Citrus Sinensis ID: 014468

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420----
Protein Sequence
MEQSSLAGKEVAAAFVSFNSRYGAAIALHIQQGVNPTEWVTEQAPAPQDVHWPFFSSSFMKRWICKLAVVVACIALTILFLIPVVIVQGLTHLDQLETWFPFLKGVLNLTFISQVITGYLPSLILQLFLSFVPPIMIMFSSIQGHISLSNIEKSACSKVWWFTVWNIFFANALSGTALYHVQVFLEPKKIPQVLAEGVPAQASFFIAYVVTSGWTSISSELFRMFPLICSFISRLCCHNASDDLEVPSIPYHSEIPRVIFSVLLGITYFFLAPLILPFLLVYYCLGYIIYRNQLLNVYAPKFETGGKFWPIVHNSTIFSLLLMHVIAIGIFGLKKLPLASSLVIPLPVLTLLFNEYCRKRFLPIFEAYPTECLVKKDREDQNDATMAEFYEKLVTAYQDPALMPVQYSGSSDGRTSPLLHAANV
Secondary Structure (PSIPRED)
ccccccccccccEEEEEEccHHHHHHHHHHHccccccccEEEEcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHcHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccEEEEEEccHHHHHHHHHHHccccccEEEEcccccccccEcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHccHHHHHHHEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHcHHHHHHccHHHHHHHcccccccccHHHHHHHHHHHcccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
MEQSSLAGKEVAAAFVSFNSRYGAAIALHIQqgvnptewvteqapapqdvhwpffssSFMKRWICKLAVVVACIALTILFLIPVVIVQGLTHLDQLETWFPFLKGVLNLTFISQVITGYLPSLILQLFlsfvppimIMFSSIQGHISLSNIEKSACSKVWWFTVWNIFFANALSGTALYHVQVflepkkipqvlaegvpaqASFFIAYVVTSGWTSISSELFRMFPLICSFISrlcchnasddlevpsipyhseipRVIFSVLLGITYFFLAPLILPFLLVYYCLGYIIYRNQLlnvyapkfetggkfwpivhNSTIFSLLLMHVIAIGIFglkklplasslviplpvltLLFNEYCRKRFLpifeaypteclvkkdredqNDATMAEFYEKLVTayqdpalmpvqysgssdgrtspllhaanv
Flexible Loop (DISEMBL)
MEQSSLAGKEVAAAFVSFNSRYGAAIALHIQQGVNPTEWVTEQAPAPQDVHWPFFSSSFMKRWICKLAVVVACIALTILFLIPVVIVQGLTHLDQLETWFPFLKGVLNLTFISQVITGYLPSLILQLFLSFVPPIMIMFSSIQGHISLSNIEKSACSKVWWFTVWNIFFANALSGTALYHVQVFLEPKKIPQVLAEGVPAQASFFIAYVVTSGWTSISSELFRMFPLICSFISRLCCHNASDDLEVPSIPYHSEIPRVIFSVLLGITYFFLAPLILPFLLVYYCLGYIIYRNQLLNVYAPKFETGGKFWPIVHNSTIFSLLLMHVIAIGIFGLKKLPLASSLVIPLPVLTLLFNEYCRKRFLPIFeaypteclvkkdrEDQNDATMAEFYEKLVTAYQDPALMPVQysgssdgrtspllhaanv
Low Complexity Region (SEG)
MEQSSLAGKEVAAAFVSFNSRYGAAIALHIQQGVNPTEWVTEQAPAPQDVHWPFFSSSFMKRWICKLAVVVACIALTILFLIPVVIVQGLTHLDQLETWFPFLKGVLNLTFISQVITGYLPSLILQLFLSFVPPIMIMFSSIQGHISLSNIEKSACSKVWWFTVWNIFFANALSGTALYHVQVFLEPKKIPQVLAEGVPAQASFFIAYVVTSGWTSISSELFRMFPLICSFISRLCCHNASDDLEVPSIPYHSEIPRVIFSVLLGITYfflaplilpfllVYYCLGYIIYRNQLLNVYAPKFETGGKFWPIVHNSTIFSLLLMHVIAIGIFGLKKLPLASSLVIPLPVLTLLFNEYCRKRFLPIFEAYPTECLVKKDREDQNDATMAEFYEKLVTAYQDPALMPVQYSGSSDGRTSPLLHAANV
Disordered region (IsUnstruct)
**********VAAAFVSFNSRYGAAIALHIQQGVNPTEWVTEQAPAPQDVHWPFFSSSFMKRWICKLAVVVACIALTILFLIPVVIVQGLTHLDQLETWFPFLKGVLNLTFISQVITGYLPSLILQLFLSFVPPIMIMFSSIQGHISLSNIEKSACSKVWWFTVWNIFFANALSGTALYHVQVFLEPKKIPQVLAEGVPAQASFFIAYVVTSGWTSISSELFRMFPLICSFISRLCCHNASDDLEVPSIPYHSEIPRVIFSVLLGITYFFLAPLILPFLLVYYCLGYIIYRNQLLNVYAPKFETGGKFWPIVHNSTIFSLLLMHVIAIGIFGLKKLPLASSLVIPLPVLTLLFNEYCRKRFLPIFEAYPTECLVKKD******ATMAEFYEKLVTAYQDPAL**********************
Disordered Region (DISOPRED)
************AAFVSFNSRYGAAIALHIQQGVNPTEWVTEQAPAPQDVHWPFFSSSFMKRWICKLAVVVACIALTILFLIPVVIVQGLTHLDQLETWFPFLKGVLNLTFISQVITGYLPSLILQLFLSFVPPIMIMFSSIQGHISLSNIEKSACSKVWWFTVWNIFFANALSGTALYHVQVFLEPKKIPQVLAEGVPAQASFFIAYVVTSGWTSISSELFRMFPLICSFISRLCCHNASDDLEVPSIPYHSEIPRVIFSVLLGITYFFLAPLILPFLLVYYCLGYIIYRNQLLNVYAPKFETGGKFWPIVHNSTIFSLLLMHVIAIGIFGLKKLPLASSLVIPLPVLTLLFNEYCRKRFLPIFEAYP***************************YQ**A***********************
Disordered Region (DISEMBL)
*********EVAAAFVSFNSRYGAAIALHIQQGVNPTEWVTEQAPAPQDVHWPFFSSSFMKRWICKLAVVVACIALTILFLIPVVIVQGLTHLDQLETWFPFLKGVLNLTFISQVITGYLPSLILQLFLSFVPPIMIMFSSIQGHISLSNIEKSACSKVWWFTVWNIFFANALSGTALYHVQVFLEPKKIPQVLAEGVPAQASFFIAYVVTSGWTSISSELFRMFPLICSFISRLCCHNASDDLEVPSIPYHSEIPRVIFSVLLGITYFFLAPLILPFLLVYYCLGYIIYRNQLLNVYAPKFETGGKFWPIVHNSTIFSLLLMHVIAIGIFGLKKLPLASSLVIPLPVLTLLFNEYCRKRFLPIFEAYPTECLVKKDREDQNDATMAEFYEKLVTAYQDPALMPVQYSGSSDGRTSPLLHAANV
Disordered Region (DISPRO)
******AGKEVAAAFVSFNSRYGAAIALHIQQGVNPTEWVTEQAPAPQDVHWPFFSSSFMKRWICKLAVVVACIALTILFLIPVVIVQGLTHLDQLETWFPFLKGVLNLTFISQVITGYLPSLILQLFLSFVPPIMIMFSSIQGHISLSNIEKSACSKVWWFTVWNIFFANALSGTALYHVQVFLEPKKIPQVLAEGVPAQASFFIAYVVTSGWTSISSELFRMFPLICSFISRLCCHNASDDLEVPSIPYHSEIPRVIFSVLLGITYFFLAPLILPFLLVYYCLGYIIYRNQLLNVYAPKFETGGKFWPIVHNSTIFSLLLMHVIAIGIFGLKKLPLASSLVIPLPVLTLLFNEYCRKRFLPIFEAYPTECLVKKDREDQNDATMAEFYEKLVTAYQDPALM*********************
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEQSSLAGKEVAAAFVSFNSRYGAAIALHIQQGVNPTEWVTEQAPAPQDVHWPFFSSSFMKRWICKLAVVVACIALTILFLIPVVIVQGLTHLDQLETWFPFLKGVLNLTFISQVITGYLPSLILQLFLSFVPPIMIMFSSIQGHISLSNIEKSACSKVWWFTVWNIFFANALSGTALYHVQVFLEPKKIPQVLAEGVPAQASFFIAYVVTSGWTSISSELFRMFPLICSFISRLCCHNASDDLEVPSIPYHSEIPRVIFSVLLGITYFFLAPLILPFLLVYYCLGYIIYRNQLLNVYAPKFETGGKFWPIVHNSTIFSLLLMHVIAIGIFGLKKLPLASSLVIPLPVLTLLFNEYCRKRFLPIFEAYPTECLVKKDREDQNDATMAEFYEKLVTAYQDPALMPVQYSGSSDGRTSPLLHAANV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	424	2.2.26 [Sep-21-2011]
Q09809	793	Uncharacterized membrane	yes	no	0.790	0.422	0.249	2e-21
Q06538	782	Uncharacterized membrane	yes	no	0.889	0.482	0.259	8e-21
Q12252	991	Phosphate metabolism prot	no	no	0.75	0.320	0.264	2e-19
Q03516	953	Uncharacterized protein R	no	no	0.740	0.329	0.255	4e-18
Q09766	871	Uncharacterized membrane	no	no	0.768	0.374	0.255	6e-17
Q5T3F8	832	Transmembrane protein 63B	yes	no	0.665	0.338	0.228	3e-10
Q3TWI9	832	Transmembrane protein 63B	yes	no	0.665	0.338	0.228	3e-10
O94886	807	Transmembrane protein 63A	no	no	0.615	0.323	0.246	6e-10
Q5R826	807	Transmembrane protein 63A	yes	no	0.615	0.323	0.242	8e-10
Q91YT8	804	Transmembrane protein 63A	no	no	0.672	0.354	0.222	1e-09

>sp|Q09809|YAB9_SCHPO Uncharacterized membrane protein C2G11.09 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC2G11.09 PE=3 SV=2

 Score =  103 bits (258), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 88/353 (24%), Positives = 169/353 (47%), Gaps = 18/353 (5%)

Query: 11  VAAAFVSFNSRYGAAIALHIQQGVNPTEWVT---EQAPAPQDVHWPFFSSSFMKRW---I 64
              AF++F S   A I    Q  ++    +    E APA  D+ W    ++++ RW    
Sbjct: 384 TGQAFITFESMATAQIV--AQTHIDSKSLMGLHIELAPAANDIQW---HNTYIGRWHKFF 438

Query: 65  CKLAVVVACIALTILFLIPVVIVQGLTHLDQLETWFPFL-KGVLNLTFISQVITGYLPSL 123
               + +    + +L+ +PV  +    +LD +   +P L + + +L F++ ++  +LP+L
Sbjct: 439 QGWFITLVTFMIILLWTVPVGAIAVFINLDTIRRLWPELGRMIEDLPFLNSLLRTFLPTL 498

Query: 124 ILQLFLSFVPPIMIMFSSIQGHISLSNIEKSACSKVWWFTVWNIFFANALSG-TALYHVQ 182
           +  LF+S  P +    SS+QG  S +  E  A  K + +   N F    ++G T+++ + 
Sbjct: 499 VYSLFISISPFLFRWLSSMQGLSSRAEEEIYAVGKNYAYLFVNFFLVYVIAGSTSIWELA 558

Query: 183 VFLEPKKIPQVLAEGVPAQASFFIAYVVTSGWTSISSELFRMFPLICSFISR--LCCHNA 240
              +       LA  +P QA FFI  +V  G      +L ++  L   F+ R  +    A
Sbjct: 559 K--DTTSFAHFLANRLPHQAQFFIDLIVLQGIGMFPLKLIQLGKLSSYFVRRSFVPYSIA 616

Query: 241 SDDLEVP-SIPYHSEIPRVIFSVLLGITYFFLAPLILPFLLVYYCLGYIIYRNQLLNVYA 299
           S   E P S      +P+ +F +L+ + Y  ++PLIL F L+Y+ +G+++Y+ +L+    
Sbjct: 617 SKKFETPDSFSVGIFLPQPMFIMLICLCYSIISPLILVFGLIYFIIGFLVYKYELIYQME 676

Query: 300 PKFETGGKFWPIVHNSTIFSLLLMHVIAIGIFGLKKLPLASSLVIPLPVLTLL 352
               + G+ W  +    IF  ++M +  +G+  L+K    S+++ PL   T++
Sbjct: 677 HPQHSTGELWSTIFLRMIFGCVIMQLTMMGLMSLRKAYWLSTVIFPLLCFTVI 729

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q06538|YL241_YEAST Uncharacterized membrane protein YLR241W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YLR241W PE=1 SV=1

 Score =  102 bits (253), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 100/386 (25%), Positives = 175/386 (45%), Gaps = 9/386 (2%)

Query: 13  AAFVSFNSRYGAAIALHIQQGVNPTEWVTEQAPAPQDVHWPFFSSSFMKRWICKLAVVVA 72
            AFV+ +S   A +A           ++T  APAP D+ W     S   R + K+     
Sbjct: 383 TAFVTMDSVANAQMAAQAVLDPRVHYFITRLAPAPHDIKWDHVCLSRKDR-LTKVYSTTV 441

Query: 73  CIALTILFL-IPVVIVQGLTHLDQLETWFPFLKGVL-NLTFISQVITGYLPSLILQLFLS 130
            I L+ LFL IPV  +  L +L  L  ++P +  +L +  + + ++TG LP+ +  L   
Sbjct: 442 FIGLSSLFLVIPVSYLATLLNLKTLSKFWPSVGQLLKDHQWAANIVTGLLPTYLFTLLNF 501

Query: 131 FVPPIMIMFSSIQGHISLSNIEKSACSKVWWFTVWNIFFANALSGTALYHVQVFLEPKKI 190
            +P      +S QG +S S  E S  SK +++   N+F    L+GTA  +     +  KI
Sbjct: 502 GIPYFYEYLTSYQGLVSYSEEEISLVSKNFFYIFVNLFLVFTLAGTASNYWAYLSDTTKI 561

Query: 191 PQVLAEGVPAQASFFIAYVVTSGWTSISSELFRMFPLICSFISRLCCHNASDDLEV---P 247
              LA  V   + F++  ++  G      +L  +  LI   + ++         E+   P
Sbjct: 562 AYQLATSVKEFSLFYVDLIILQGIGMFPFKLLLVGSLIGFPLVKIKAKTPRQRNELYNPP 621

Query: 248 SIPYHSEIPRVIFSVLLGITYFFLAPLILPFLLVYYCLGYIIYRNQLLNVYAPKFETGGK 307
              +  ++P+ I  +++ + Y  ++  IL   L Y+ +G+ +Y+ QL+        + GK
Sbjct: 622 IFNFGLQLPQPILILIITLIYSVMSTKILTSGLAYFIIGFYVYKYQLIFATDHLPHSTGK 681

Query: 308 FWPIVHNSTIFSLLLMHVIAIGIF-GLKKLPLASSLVIPLPVLTLLFNEYCRKRFLPIFE 366
            WP++    I  LLL  +   G   G +   + SS + PLPV+TL F     K +LP+ +
Sbjct: 682 VWPLIFRRIIVGLLLFQLTMTGTLAGFEGGWVLSSCLFPLPVVTLCFLYDFEKNYLPLSK 741

Query: 367 AYPTECLVKKDREDQ--NDATMAEFY 390
                 + + +R++   N A   E Y
Sbjct: 742 YIALSSIREYERDNSTVNSANEEESY 767

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q12252|PHM7_YEAST Phosphate metabolism protein 7 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PHM7 PE=1 SV=1

 Score = 97.4 bits (241), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 89/337 (26%), Positives = 158/337 (46%), Gaps = 19/337 (5%)

Query: 46  APQDVHWPFFSSSFMKRWICKLAVVVACIALTILFLIPVVIVQGLTHLDQLETWFPFLKG 105
           +P+DV+W     S  +R   +       + L I +  PV +V  +++++ L    PFL+ 
Sbjct: 364 SPEDVNWGSMRLSSKERHSRRAVANTIMVLLIIFWAFPVAVVGIISNVNFLTDKVPFLRF 423

Query: 106 VLNL-TFISQVITGYLPSLILQLFLSFVPPIMIMFSSIQGHISLSNIEKSACSKVWW--F 162
           + N+ TF+  VITG LP++ L + +S VPP ++M   + G ++    E    S+ W+  F
Sbjct: 424 INNMPTFLMGVITGLLPTIALVVLMSLVPPFIVMLGKLSGCVTRQ--ETDLYSQAWYYAF 481

Query: 163 TVWNIFFANALSGTALYHVQVFLE-PKKIPQVLAEGVPAQASFFIAYVVTSGWTSISSEL 221
            V  IF     + +A   V   ++ P+    +LA  +P  ++F+I Y +  G T  +  +
Sbjct: 482 AVIQIFLVVTATSSASSTVDSIIDRPRSAMTLLANNLPKASNFYIMYFILKGLTGPTWTI 541

Query: 222 FRMFPLICS-FISRLCCH------NASDDLEVP--SIPYHSEIPRVIFSVLLGITYFFLA 272
            +   L+ S  + R+         N  + L  P   I Y    P +   V + I Y  +A
Sbjct: 542 LQAVNLLLSKVLGRVLDSTPRQKWNRYNTLATPRMGIVY----PGIEILVCIYICYSIIA 597

Query: 273 PLILPFLLVYYCLGYIIYRNQLLNVYAPKFETGGKFWPIVHNSTIFSLLLMHVIAIGIFG 332
           P++L F  V   L Y+ Y   L  V+   F+  G+ +P         + L  V  +G+F 
Sbjct: 598 PILLFFSTVMLTLLYVAYLYNLNYVFGFSFDLKGRNYPRALFQIFVGIYLSEVCLLGLFI 657

Query: 333 LKKLPLASSLVIPLPVLTLLFNEYCRKRFLPIFEAYP 369
           + K      L +   V+T L + Y +++F+P+F+A P
Sbjct: 658 MAKTWGPLVLEVFWIVVTALAHIYMKRKFIPLFDAVP 694

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q03516|RSN1_YEAST Uncharacterized protein RSN1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RSN1 PE=1 SV=1

 Score = 93.2 bits (230), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 87/340 (25%), Positives = 150/340 (44%), Gaps = 26/340 (7%)

Query: 13  AAFVSFNSRYGAAIALHIQQGVNPTEWVTEQAP----------APQDVHWPFFSSSFMKR 62
           + FV F S+Y A +A  I          T  AP           P DV W      + +R
Sbjct: 334 SVFVEFESQYQAQVAAQI---------TTYHAPLFMTPVYIGIEPSDVVWFNLRMFWWER 384

Query: 63  WICKLAVVVACIALTILFLIPVVIVQGLTHLDQLETWFPFLKGVLNL-TFISQVITGYLP 121
              +++ V A +AL IL+  PV  V  ++++  L     +LK +  L   +  ++T   P
Sbjct: 385 LGREVSAVSAIVALVILWAFPVAFVGMISNITSLTNEVKWLKFIYKLPKQLLGLLTSLAP 444

Query: 122 SLILQLFLSFVPPIMIMFSSIQGHISLSNIEKSACSKVWWFTVWNIFFANALSGTALYHV 181
           ++ L + +SF+P  +   +  QG  S  N+E       + F V  +F    LS  A   V
Sbjct: 445 TVALAVLMSFLPKFIRGMAITQGAPSKQNVEYFTQQAYFAFQVIQVFLVTTLSSAATSTV 504

Query: 182 -QVFLEPKKIPQVLAEGVPAQASFFIAYVVTSGWTSISSELFRMFPLIC-----SFISRL 235
            ++  EP K   +LA  +P  ++FF++YV+  G +  S  L ++ PLI      +F+   
Sbjct: 505 TEIVKEPTKAMDLLASNLPKASNFFMSYVILQGLSISSGALLQIVPLILFYVLGAFLDGT 564

Query: 236 CCHNASDDLEVPSIPYHSEIPRVIFSVLLGITYFFLAPLILPFLLVYYCLGYIIYRNQLL 295
                +    + S+ + +  P      ++  +Y  ++PLIL F  V + L YI Y   L 
Sbjct: 565 VRKKWNRFCGLSSMQWGTAFPVYTNLAVITFSYSIISPLILLFAAVAFFLLYIAYLYNLT 624

Query: 296 NVYAPKFETGGKFWPIVHNSTIFSLLLMHVIAIGIFGLKK 335
            VY    +  G ++P     TI  + +  +  +G+F + K
Sbjct: 625 YVYQESPDARGIYYPRALFQTIVGIYIGQICLLGLFAVGK 664

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q09766|YA7D_SCHPO Uncharacterized membrane protein C24H6.13 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC24H6.13 PE=1 SV=1

 Score = 89.0 bits (219), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 86/337 (25%), Positives = 148/337 (43%), Gaps = 11/337 (3%)

Query: 46  APQDVHWPFFSSSFMKRWICKLAVVVACIALTILFLIPVVIVQGLTHLDQLETWFPFLKG 105
           AP+D+ W     S   R   K         + I +  PV +V  +++++ L     FLK 
Sbjct: 355 APEDIVWSNLDLSMYTRRGKKTISNTILTLMIIFWAFPVAVVGCISNVNYLIEKVHFLKF 414

Query: 106 VLNLT-FISQVITGYLPSLILQLFLSFVPPIMIMFSSIQGHISLSNIEKSACSKVWWFTV 164
           + ++   +  +ITG LPS+ L + +S VPP +       G +++  IE    +  + F V
Sbjct: 415 IDHMPPKLLGIITGILPSVALSILMSLVPPFIKFLGKFGGALTVQEIENYCQNWYYAFQV 474

Query: 165 WNIFFANALSGTALYH-VQVFLEPKKIPQVLAEGVPAQASFFIAYVVTSGWTSISSELFR 223
             +F    ++  A    VQV  EP     +LA  +P  ++F+I+Y +  G +     L +
Sbjct: 475 VQVFLVTTMTSAATSAVVQVIKEPASSMTLLASNLPKASNFYISYFLLQGLSIPGGALLQ 534

Query: 224 MFPLICS-FISRLCCH------NASDDLEVPSIPYHSEIPRVIFSVLLGITYFFLAPLIL 276
           +  L+ S  + R+  +      N  + L  PS  + +  P     V + I Y  +AP+I+
Sbjct: 535 IVTLLLSKVLGRIFDNTPRKKWNRWNQLSAPS--WGTVYPVYSLLVTIMICYSIIAPIII 592

Query: 277 PFLLVYYCLGYIIYRNQLLNVYAPKFETGGKFWPIVHNSTIFSLLLMHVIAIGIFGLKKL 336
            F  V + L Y  Y   L+ V     +  G+ +P         L L  V  IG+F L K 
Sbjct: 593 GFAAVAFVLIYFAYSYNLIYVLGHNADAKGRNYPRALFQVFVGLYLAEVCLIGLFVLAKN 652

Query: 337 PLASSLVIPLPVLTLLFNEYCRKRFLPIFEAYPTECL 373
             A+ L       T+  + Y + +FLP+ +A P   +
Sbjct: 653 WGATVLEAVFLGFTVACHLYFKYKFLPLMDAVPISAI 689

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q5T3F8|TM63B_HUMAN Transmembrane protein 63B OS=Homo sapiens GN=TMEM63B PE=1 SV=1

 Score = 67.0 bits (162), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 77/337 (22%), Positives = 140/337 (41%), Gaps = 55/337 (16%)

Query: 2   EQSSLAGKEVAAAFVSFNSRYGAAIALH--------------------IQQGVNPTEWVT 41
           E+  +  K +  AFV+F++    AI L                       + ++ + W  
Sbjct: 350 EKEKVNEKPLGMAFVTFHNETITAIILKDFNVCKCQGCTCRGEPRPSSCSESLHISNWTV 409

Query: 42  EQAPAPQDVHWPFFSSSFMKRWICKLAVVVACIALTILFLIPVVIVQGLTHLDQLETWFP 101
             AP PQ+++W   S      W+  L + V    L      P +I+   T +D+     P
Sbjct: 410 SYAPDPQNIYWEHLSIRGFIWWLRCLVINVVLFILLFFLTTPAIII---TTMDKFNVTKP 466

Query: 102 FLKGVLNLTFISQVITGYLPSLILQLFLSFVPPIMIMFSSIQGHISLSNIEKSACSKVWW 161
                LN    + +IT + P+L+L  F + +P I+   +  + H + S   ++   K + 
Sbjct: 467 V--EYLN----NPIITQFFPTLLLWCFSALLPTIVYYSAFFEAHWTRSGENRTTMHKCYT 520

Query: 162 FTVWNIFFANALSGTALYHVQVFLEPKKIPQVLAEG--------VPAQASFFIAYVVTSG 213
           F ++ +    +L  ++L     +L  KK    LAE         +P   +FF+ YV+ S 
Sbjct: 521 FLIFMVLLLPSLGLSSLDLFFRWLFDKKF---LAEAAIRFECVFLPDNGAFFVNYVIASA 577

Query: 214 WTSISSELFRMFPLICSFISRLCCHNASDDLEVPSIPYHSEIP----------RVIFSVL 263
           +   + +L R+ P +  ++ RLC   A    E  ++  H                +F+V+
Sbjct: 578 FIGNAMDLLRI-PGLLMYMIRLCL--ARSAAERRNVKRHQAYEFQFGAAYAWMMCVFTVV 634

Query: 264 LGITYFFLAPLILPFLLVYYCLGYIIYRNQLLNVYAP 300
           +  TY    P+I+PF L+Y  L +++ R  L   Y P
Sbjct: 635 M--TYSITCPIIVPFGLMYMLLKHLVDRYNLYYAYLP 669

Homo sapiens (taxid: 9606)

>sp|Q3TWI9|TM63B_MOUSE Transmembrane protein 63B OS=Mus musculus GN=Tmem63b PE=1 SV=1

 Score = 66.6 bits (161), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 77/337 (22%), Positives = 140/337 (41%), Gaps = 55/337 (16%)

Query: 2   EQSSLAGKEVAAAFVSFNSRYGAAIALH--------------------IQQGVNPTEWVT 41
           E+  +  K +  AFV+F++    AI L                       + ++ + W  
Sbjct: 350 EKEKVNEKPLGMAFVTFHNETITAIILKDFNVCKCQGCTCRGEPRASSCSEALHISNWTV 409

Query: 42  EQAPAPQDVHWPFFSSSFMKRWICKLAVVVACIALTILFLIPVVIVQGLTHLDQLETWFP 101
             AP PQ+++W   S      W+  L + V    L      P +I+   T +D+     P
Sbjct: 410 TYAPDPQNIYWEHLSIRGFIWWLRCLVINVVLFILLFFLTTPAIII---TTMDKFNVTKP 466

Query: 102 FLKGVLNLTFISQVITGYLPSLILQLFLSFVPPIMIMFSSIQGHISLSNIEKSACSKVWW 161
                LN    + +IT + P+L+L  F + +P I+   +  + H + S   ++   K + 
Sbjct: 467 V--EYLN----NPIITQFFPTLLLWCFSALLPTIVYYSAFFEAHWTRSGENRTTMHKCYT 520

Query: 162 FTVWNIFFANALSGTALYHVQVFLEPKKIPQVLAEG--------VPAQASFFIAYVVTSG 213
           F ++ +    +L  ++L     +L  KK    LAE         +P   +FF+ YV+ S 
Sbjct: 521 FLIFMVLLLPSLGLSSLDLFFRWLFDKKF---LAEAAIRFECVFLPDNGAFFVNYVIASA 577

Query: 214 WTSISSELFRMFPLICSFISRLCCHNASDDLEVPSIPYHSEIP----------RVIFSVL 263
           +   + +L R+ P +  ++ RLC   A    E  ++  H                +F+V+
Sbjct: 578 FIGNAMDLLRI-PGLLMYMIRLCL--ARSAAERRNVKRHQAYEFQFGAAYAWMMCVFTVV 634

Query: 264 LGITYFFLAPLILPFLLVYYCLGYIIYRNQLLNVYAP 300
           +  TY    P+I+PF L+Y  L +++ R  L   Y P
Sbjct: 635 M--TYSITCPIIVPFGLMYMLLKHLVDRYNLYYAYLP 669

Mus musculus (taxid: 10090)

>sp|O94886|TM63A_HUMAN Transmembrane protein 63A OS=Homo sapiens GN=TMEM63A PE=2 SV=3

 Score = 65.9 bits (159), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 70/284 (24%), Positives = 124/284 (43%), Gaps = 23/284 (8%)

Query: 37  TEWVTEQAPAPQDVHWPFFSSSFMKRWICKLAVVVACIALTILFLIPVVIVQGLTHLDQL 96
           ++W    A  P+D+ W   S   ++ W+  L +             P +I   L+ +D+ 
Sbjct: 393 SKWTVTFAADPEDICWKNLSIQGLRWWLQWLGINFTLFLGLFFLTTPSII---LSTMDKF 449

Query: 97  ETWFPFLKGVLNLTFISQVITGYLPSLILQLFLSFVPPIMIMFSSIQGHISLSNIEKSAC 156
               P     LN   ISQ    + P+L+L  F + +P I+   + ++ H + S   +   
Sbjct: 450 NVTKPI--HALNNPIISQ----FFPTLLLWSFSALLPSIVYYSTLLESHWTKSGENQIMM 503

Query: 157 SKVWWFTVWNIFFANALSGTAL--YHVQVFLEPKKIPQVLAEGV--PAQASFFIAYVVTS 212
           +KV+ F ++ +    +L  T+L  +   +F +      +  E V  P Q +FF+ YV+ S
Sbjct: 504 TKVYIFLIFMVLILPSLGLTSLDFFFRWLFDKTSSEASIRLECVFLPDQGAFFVNYVIAS 563

Query: 213 GWTSISSELFRMFPLICSFISRLCCHNASDDLEVP-SIPYHSEIPRV------IFSVLLG 265
            +     EL R+  LI      +    A+D   V  +  +  E   +      +F+V+  
Sbjct: 564 AFIGNGMELLRLPGLILYTFRMIMAKTAADRRNVKQNQAFQYEFGAMYAWMLCVFTVI-- 621

Query: 266 ITYFFLAPLILPFLLVYYCLGYIIYRNQLLNVYAP-KFETGGKF 308
           + Y    P+I PF L+Y  L +++ R+ L  VY P K E G  F
Sbjct: 622 VAYSITCPIIAPFGLIYILLKHMVDRHNLYFVYLPAKLEKGIHF 665

Homo sapiens (taxid: 9606)

>sp|Q5R826|TM63A_PONAB Transmembrane protein 63A OS=Pongo abelii GN=TMEM63A PE=2 SV=1

 Score = 65.5 bits (158), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 69/284 (24%), Positives = 124/284 (43%), Gaps = 23/284 (8%)

Query: 37  TEWVTEQAPAPQDVHWPFFSSSFMKRWICKLAVVVACIALTILFLIPVVIVQGLTHLDQL 96
           ++W    A  P+D+ W   S   ++ W+  L +             P +I   L+ +D+ 
Sbjct: 393 SKWTVTFAADPEDICWKNLSIQGLRWWLQWLGINFTLFLGLFFLTTPSII---LSTMDKF 449

Query: 97  ETWFPFLKGVLNLTFISQVITGYLPSLILQLFLSFVPPIMIMFSSIQGHISLSNIEKSAC 156
               P     LN   ISQ    + P+L+L  F + +P I+   + ++ H + S   +   
Sbjct: 450 NVTKPI--HALNNPIISQ----FFPTLLLWSFSALLPSIVYYSTLLESHWTKSGENQIMM 503

Query: 157 SKVWWFTVWNIFFANALSGTAL--YHVQVFLEPKKIPQVLAEGV--PAQASFFIAYVVTS 212
           +KV+ F ++ +    +L  T+L  +   +F +      +  E V  P Q +FF+ YV+ S
Sbjct: 504 TKVYIFLIFMVLILPSLGLTSLDFFFRWLFDKTSSEASIRLECVFLPDQGAFFVNYVIAS 563

Query: 213 GWTSISSELFRMFPLICSFISRLCCHNASDDLEVP-SIPYHSEIPRV------IFSVLLG 265
            +     EL R+  LI      +    A+D   V  +  +  E   +      +F+V++ 
Sbjct: 564 AFIGNGMELLRLPGLILYTFRMIMAKTAADRRNVKQNQAFQYEFGAMYAWMLCVFTVIMA 623

Query: 266 ITYFFLAPLILPFLLVYYCLGYIIYRNQLLNVYAP-KFETGGKF 308
             Y    P+I PF L+Y  L +++ R+ L  +Y P K E G  F
Sbjct: 624 --YSITCPIIAPFGLIYILLKHMVDRHNLYFIYLPAKLEKGIHF 665

Pongo abelii (taxid: 9601)

>sp|Q91YT8|TM63A_MOUSE Transmembrane protein 63A OS=Mus musculus GN=Tmem63a PE=2 SV=1

 Score = 64.7 bits (156), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 74/333 (22%), Positives = 141/333 (42%), Gaps = 48/333 (14%)

Query: 2   EQSSLAGKEVAAAFVSFNSRYGAAIALHIQQGVNP-----------------------TE 38
           E+S +  + +  AFV+F  +   ++A +I +  N                        ++
Sbjct: 337 EESRVQDQPLGMAFVTFREK---SMATYILKDFNACKCQGLRCKGEPQPSSYSRELCVSK 393

Query: 39  WVTEQAPAPQDVHWPFFSSSFMKRWICKLAVVVACIALTILFLIPVVIVQGLTHLDQLET 98
           W    A  P+D+ W   S   ++ W+  L +  +   +      P +I   ++ +D+   
Sbjct: 394 WTVTFASYPEDICWKNLSIQGVRWWLQWLGINFSLFVVLFFLTTPSII---MSTMDKFNV 450

Query: 99  WFPFLKGVLNLTFISQVITGYLPSLILQLFLSFVPPIMIMFSSIQGHISLSNIEKSACSK 158
             P     LN   ISQ    + P+L+L  F + +P I+   + ++ H + S   +   SK
Sbjct: 451 TKPI--HALNNPVISQ----FFPTLLLWSFSALLPSIVYYSTLLESHWTRSGENRIMVSK 504

Query: 159 VWWFTVWNIFFANALSGTAL--YHVQVFLEPKKIPQVLAEGV--PAQASFFIAYVVTSGW 214
           V+ F ++ +    +L  T+L  +   +F +      +  E V  P Q +FF+ YV+ S +
Sbjct: 505 VYIFLIFMVLILPSLGLTSLDFFFRWLFDKTSSETSIRLECVFLPDQGAFFVNYVIASAF 564

Query: 215 TSISSELFRMFPLICSFISRLCCHNASDDLEVP-SIPYHSEIPRV------IFSVLLGIT 267
                EL R+  LI      +    A+D   V  +  +  E   +      +F+V++   
Sbjct: 565 IGSGMELLRLPGLILYTFRMIMAKTAADRRNVKQNQAFEYEFGAMYAWMLCVFTVIMA-- 622

Query: 268 YFFLAPLILPFLLVYYCLGYIIYRNQLLNVYAP 300
           Y    P+I+PF L+Y  L +++ R+ L   Y P
Sbjct: 623 YSITCPIIVPFGLIYILLKHMVDRHNLYFAYLP 655

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	424
296082956	917	unnamed protein product [Vitis vinifera]	0.995	0.460	0.777	0.0
359489011	717	PREDICTED: uncharacterized membrane prot	0.995	0.588	0.771	0.0
255578298	717	conserved hypothetical protein [Ricinus	0.992	0.587	0.779	0.0
224077730	716	predicted protein [Populus trichocarpa]	0.997	0.590	0.763	0.0
255562966	710	conserved hypothetical protein [Ricinus	0.992	0.592	0.742	0.0
356572990	712	PREDICTED: uncharacterized membrane prot	0.997	0.594	0.725	1e-180
296088788	888	unnamed protein product [Vitis vinifera]	0.992	0.474	0.721	1e-179
225464071	715	PREDICTED: uncharacterized membrane prot	0.992	0.588	0.721	1e-179
357496519	721	Membrane protein, putative [Medicago tru	0.997	0.586	0.722	1e-178
357496521	433	Membrane protein, putative [Medicago tru	0.997	0.976	0.722	1e-178

>gi|296082956|emb|CBI22257.3| unnamed protein product [Vitis vinifera]

 Score =  688 bits (1776), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 328/422 (77%), Positives = 373/422 (88%)

Query: 1   MEQSSLAGKEVAAAFVSFNSRYGAAIALHIQQGVNPTEWVTEQAPAPQDVHWPFFSSSFM 60
           MEQSSLAG+EV AAFVSF SR+GAAIALHIQQG++PTEWVTE+AP PQDV+WPFFS+SF+
Sbjct: 494 MEQSSLAGEEVRAAFVSFKSRFGAAIALHIQQGIDPTEWVTERAPEPQDVYWPFFSASFL 553

Query: 61  KRWICKLAVVVACIALTILFLIPVVIVQGLTHLDQLETWFPFLKGVLNLTFISQVITGYL 120
           KRWICKL  VVA I LT+ FLIPVVIVQGLTHLDQLE WFPFL+GVL +TF+SQVITGYL
Sbjct: 554 KRWICKLVFVVAYILLTVSFLIPVVIVQGLTHLDQLEVWFPFLRGVLTITFVSQVITGYL 613

Query: 121 PSLILQLFLSFVPPIMIMFSSIQGHISLSNIEKSACSKVWWFTVWNIFFANALSGTALYH 180
           PSLILQLFLS VPPIMI+FSS+QG+IS S I+KSAC+K+ WFT+WNIFFAN LSG+ LY 
Sbjct: 614 PSLILQLFLSLVPPIMIIFSSMQGYISFSKIQKSACTKMLWFTIWNIFFANVLSGSVLYQ 673

Query: 181 VQVFLEPKKIPQVLAEGVPAQASFFIAYVVTSGWTSISSELFRMFPLICSFISRLCCHNA 240
           V + LEPK+IP++LAE VPAQASFFIAYVVTSGWTS+SSE+FRMFPLICSF+ +    N 
Sbjct: 674 VNIILEPKEIPKILAEVVPAQASFFIAYVVTSGWTSLSSEIFRMFPLICSFVKQHFTGND 733

Query: 241 SDDLEVPSIPYHSEIPRVIFSVLLGITYFFLAPLILPFLLVYYCLGYIIYRNQLLNVYAP 300
            ++ +VPSIPYH EIP ++F  LLG+TYFFLAPLILPFLLVY+CL YI+YRNQLLNV+AP
Sbjct: 734 GEEFQVPSIPYHKEIPTILFFGLLGVTYFFLAPLILPFLLVYFCLAYIVYRNQLLNVFAP 793

Query: 301 KFETGGKFWPIVHNSTIFSLLLMHVIAIGIFGLKKLPLASSLVIPLPVLTLLFNEYCRKR 360
           K+ETGGKFWPIVHNSTIFSL+LMH+IAIGIFGLKKLPLASSL IPLPVLTLLFNE+CRKR
Sbjct: 794 KYETGGKFWPIVHNSTIFSLVLMHIIAIGIFGLKKLPLASSLTIPLPVLTLLFNEFCRKR 853

Query: 361 FLPIFEAYPTECLVKKDREDQNDATMAEFYEKLVTAYQDPALMPVQYSGSSDGRTSPLLH 420
           FLPIF  Y  ECL+ KDREDQ D TM EF +KLVTAYQDPAL P+QYSGS     SPLLH
Sbjct: 854 FLPIFRDYSAECLINKDREDQRDPTMVEFRDKLVTAYQDPALKPIQYSGSIGRLKSPLLH 913

Query: 421 AA 422
           +A
Sbjct: 914 SA 915

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359489011|ref|XP_002278752.2| PREDICTED: uncharacterized membrane protein YLR241W-like [Vitis vinifera]

 Score =  687 bits (1773), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 328/425 (77%), Positives = 373/425 (87%), Gaps = 3/425 (0%)

Query: 1   MEQSSLAGK---EVAAAFVSFNSRYGAAIALHIQQGVNPTEWVTEQAPAPQDVHWPFFSS 57
           MEQSSLAG+   EV AAFVSF SR+GAAIALHIQQG++PTEWVTE+AP PQDV+WPFFS+
Sbjct: 291 MEQSSLAGEVRAEVRAAFVSFKSRFGAAIALHIQQGIDPTEWVTERAPEPQDVYWPFFSA 350

Query: 58  SFMKRWICKLAVVVACIALTILFLIPVVIVQGLTHLDQLETWFPFLKGVLNLTFISQVIT 117
           SF+KRWICKL  VVA I LT+ FLIPVVIVQGLTHLDQLE WFPFL+GVL +TF+SQVIT
Sbjct: 351 SFLKRWICKLVFVVAYILLTVSFLIPVVIVQGLTHLDQLEVWFPFLRGVLTITFVSQVIT 410

Query: 118 GYLPSLILQLFLSFVPPIMIMFSSIQGHISLSNIEKSACSKVWWFTVWNIFFANALSGTA 177
           GYLPSLILQLFLS VPPIMI+FSS+QG+IS S I+KSAC+K+ WFT+WNIFFAN LSG+ 
Sbjct: 411 GYLPSLILQLFLSLVPPIMIIFSSMQGYISFSKIQKSACTKMLWFTIWNIFFANVLSGSV 470

Query: 178 LYHVQVFLEPKKIPQVLAEGVPAQASFFIAYVVTSGWTSISSELFRMFPLICSFISRLCC 237
           LY V + LEPK+IP++LAE VPAQASFFIAYVVTSGWTS+SSE+FRMFPLICSF+ +   
Sbjct: 471 LYQVNIILEPKEIPKILAEVVPAQASFFIAYVVTSGWTSLSSEIFRMFPLICSFVKQHFT 530

Query: 238 HNASDDLEVPSIPYHSEIPRVIFSVLLGITYFFLAPLILPFLLVYYCLGYIIYRNQLLNV 297
            N  ++ +VPSIPYH EIP ++F  LLG+TYFFLAPLILPFLLVY+CL YI+YRNQLLNV
Sbjct: 531 GNDGEEFQVPSIPYHKEIPTILFFGLLGVTYFFLAPLILPFLLVYFCLAYIVYRNQLLNV 590

Query: 298 YAPKFETGGKFWPIVHNSTIFSLLLMHVIAIGIFGLKKLPLASSLVIPLPVLTLLFNEYC 357
           +APK+ETGGKFWPIVHNSTIFSL+LMH+IAIGIFGLKKLPLASSL IPLPVLTLLFNE+C
Sbjct: 591 FAPKYETGGKFWPIVHNSTIFSLVLMHIIAIGIFGLKKLPLASSLTIPLPVLTLLFNEFC 650

Query: 358 RKRFLPIFEAYPTECLVKKDREDQNDATMAEFYEKLVTAYQDPALMPVQYSGSSDGRTSP 417
           RKRFLPIF  Y  ECL+ KDREDQ D TM EF +KLVTAYQDPAL P+QYSGS     SP
Sbjct: 651 RKRFLPIFRDYSAECLINKDREDQRDPTMVEFRDKLVTAYQDPALKPIQYSGSIGRLKSP 710

Query: 418 LLHAA 422
           LLH+A
Sbjct: 711 LLHSA 715

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255578298|ref|XP_002530016.1| conserved hypothetical protein [Ricinus communis] gi|223530495|gb|EEF32378.1| conserved hypothetical protein [Ricinus communis]

 Score =  686 bits (1771), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 328/421 (77%), Positives = 375/421 (89%)

Query: 1   MEQSSLAGKEVAAAFVSFNSRYGAAIALHIQQGVNPTEWVTEQAPAPQDVHWPFFSSSFM 60
           M+Q SLAG++V AAFVSF SR+GAA+ALHIQQGVNPTEWVTEQAP PQDVHW FFS+SF+
Sbjct: 295 MKQRSLAGEKVPAAFVSFKSRFGAAVALHIQQGVNPTEWVTEQAPEPQDVHWSFFSASFL 354

Query: 61  KRWICKLAVVVACIALTILFLIPVVIVQGLTHLDQLETWFPFLKGVLNLTFISQVITGYL 120
           +RWI KL  V A + LTILFLIPV++VQGL +L QLETWFPFLKG+L+LT +SQ+ITGYL
Sbjct: 355 RRWIYKLVAVFAFLILTILFLIPVLLVQGLANLYQLETWFPFLKGILSLTVVSQLITGYL 414

Query: 121 PSLILQLFLSFVPPIMIMFSSIQGHISLSNIEKSACSKVWWFTVWNIFFANALSGTALYH 180
           PSLILQLFL FVPP+MI+FSS+QG+ISLS IEKSAC+KV  FT+WNIF AN LSG+A Y 
Sbjct: 415 PSLILQLFLFFVPPLMILFSSMQGYISLSQIEKSACTKVLCFTLWNIFLANVLSGSAFYM 474

Query: 181 VQVFLEPKKIPQVLAEGVPAQASFFIAYVVTSGWTSISSELFRMFPLICSFISRLCCHNA 240
           V VFLEPKKIP+VLAE VPAQASFFI+YVVTSGWTS+SSELFR+ PLICSFI RLC    
Sbjct: 475 VNVFLEPKKIPEVLAEAVPAQASFFISYVVTSGWTSLSSELFRLIPLICSFIKRLCARKD 534

Query: 241 SDDLEVPSIPYHSEIPRVIFSVLLGITYFFLAPLILPFLLVYYCLGYIIYRNQLLNVYAP 300
            D  EVPSIPYHSEIP  +F VLLGITYFFLAPLILPFLL+Y+CLGYII+RNQLLNVYAP
Sbjct: 535 GDKFEVPSIPYHSEIPTALFFVLLGITYFFLAPLILPFLLIYFCLGYIIFRNQLLNVYAP 594

Query: 301 KFETGGKFWPIVHNSTIFSLLLMHVIAIGIFGLKKLPLASSLVIPLPVLTLLFNEYCRKR 360
           K+ET GKFWPIVH ST+FSL+LMHVIAIG FGLKKLPLASSL IPLPVLTLLFNEYCRKR
Sbjct: 595 KYETSGKFWPIVHYSTVFSLILMHVIAIGTFGLKKLPLASSLTIPLPVLTLLFNEYCRKR 654

Query: 361 FLPIFEAYPTECLVKKDREDQNDATMAEFYEKLVTAYQDPALMPVQYSGSSDGRTSPLLH 420
           FLPIF+AYPTECLV KD+ED+N+ +MAEFY+KLV+AY DPALMP+QY+ + D ++SPLLH
Sbjct: 655 FLPIFKAYPTECLVTKDKEDENEPSMAEFYDKLVSAYHDPALMPIQYARNVDRQSSPLLH 714

Query: 421 A 421
           +
Sbjct: 715 S 715

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224077730|ref|XP_002305383.1| predicted protein [Populus trichocarpa] gi|222848347|gb|EEE85894.1| predicted protein [Populus trichocarpa]

 Score =  677 bits (1746), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 323/423 (76%), Positives = 373/423 (88%)

Query: 2   EQSSLAGKEVAAAFVSFNSRYGAAIALHIQQGVNPTEWVTEQAPAPQDVHWPFFSSSFMK 61
           EQ+ LAG+EV AAFVSF SR+GAA+ALHIQQGVNPTEWVTE+AP PQDVHW FFS+SF+K
Sbjct: 294 EQNLLAGEEVPAAFVSFKSRFGAAVALHIQQGVNPTEWVTERAPEPQDVHWAFFSASFIK 353

Query: 62  RWICKLAVVVACIALTILFLIPVVIVQGLTHLDQLETWFPFLKGVLNLTFISQVITGYLP 121
           RWI KL V+VA  AL +LFLIPVVIVQGL +LDQLE WFPFLK +L+LT +SQVITGYLP
Sbjct: 354 RWIFKLVVLVASFALIVLFLIPVVIVQGLANLDQLEKWFPFLKDILSLTVVSQVITGYLP 413

Query: 122 SLILQLFLSFVPPIMIMFSSIQGHISLSNIEKSACSKVWWFTVWNIFFANALSGTALYHV 181
           SLILQLFLSFVPPIM+ FS+IQG+IS S IE+S+CSK+ WF +WNIFFAN LSG+ALY V
Sbjct: 414 SLILQLFLSFVPPIMLTFSAIQGYISRSQIERSSCSKMLWFIIWNIFFANVLSGSALYLV 473

Query: 182 QVFLEPKKIPQVLAEGVPAQASFFIAYVVTSGWTSISSELFRMFPLICSFISRLCCHNAS 241
            VFLEPK IP+VLAE VP QASFFI+YVVTSGWT++SSELFR+ PL+CSF  RL      
Sbjct: 474 NVFLEPKNIPRVLAEAVPGQASFFISYVVTSGWTNLSSELFRLIPLVCSFWKRLFSGKYG 533

Query: 242 DDLEVPSIPYHSEIPRVIFSVLLGITYFFLAPLILPFLLVYYCLGYIIYRNQLLNVYAPK 301
           D+ EVPSIPY+++IP ++F  LLGITYFFL+PLILPFLLVY+CLGYII+RNQLLNVYAPK
Sbjct: 534 DEFEVPSIPYYNDIPTILFFGLLGITYFFLSPLILPFLLVYFCLGYIIFRNQLLNVYAPK 593

Query: 302 FETGGKFWPIVHNSTIFSLLLMHVIAIGIFGLKKLPLASSLVIPLPVLTLLFNEYCRKRF 361
           +ET G FWPIVHNSTIFSL+LMH+IAIGIFGLKKLPLASSL+IPLPVLTL+FN YC+KRF
Sbjct: 594 YETAGMFWPIVHNSTIFSLILMHIIAIGIFGLKKLPLASSLIIPLPVLTLIFNAYCQKRF 653

Query: 362 LPIFEAYPTECLVKKDREDQNDATMAEFYEKLVTAYQDPALMPVQYSGSSDGRTSPLLHA 421
           LP+F+AYPTECL+KKDR+D N+A M EFY+KLVTAYQDPAL PVQY+ SSD  TSPLLH+
Sbjct: 654 LPLFKAYPTECLIKKDRKDLNEAGMTEFYDKLVTAYQDPALRPVQYARSSDRDTSPLLHS 713

Query: 422 ANV 424
             V
Sbjct: 714 TEV 716

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255562966|ref|XP_002522488.1| conserved hypothetical protein [Ricinus communis] gi|223538373|gb|EEF39980.1| conserved hypothetical protein [Ricinus communis]

 Score =  652 bits (1683), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 314/423 (74%), Positives = 355/423 (83%), Gaps = 2/423 (0%)

Query: 1   MEQSSLA-GKEVAAAFVSFNSRYGAAIALHIQQGVNPTEWVTEQAPAPQDVHWPFFSSSF 59
           +EQS L+ G+E  AAFVSF SRYGAA+A H+QQ VNPT+WVTEQAP P DV+WPFFSSSF
Sbjct: 288 LEQSDLSFGEETRAAFVSFKSRYGAAVAFHLQQSVNPTQWVTEQAPEPDDVYWPFFSSSF 347

Query: 60  MKRWICKLAVVVACIALTILFLIPVVIVQGLTHLDQLETWFPFLKGVLNLTFISQVITGY 119
           M+RWI KL VVVACI LTILFLIPVV+VQGLT+L QLE WFPFLK +L +TF+SQVITGY
Sbjct: 348 MRRWISKLVVVVACILLTILFLIPVVVVQGLTNLSQLEIWFPFLKSILTITFVSQVITGY 407

Query: 120 LPSLILQLFLSFVPPIMIMFSSIQGHISLSNIEKSACSKVWWFTVWNIFFANALSGTALY 179
           LPSLILQLFL  VPPIM   SSIQG+IS S+IEKSAC+KV WFT+WNIFFA   SG+ LY
Sbjct: 408 LPSLILQLFLKIVPPIMEFLSSIQGYISHSDIEKSACNKVLWFTIWNIFFATVFSGSVLY 467

Query: 180 HVQVFLEPKKIPQVLAEGVPAQASFFIAYVVTSGWTSISSELFRMFPLICSFISRLCCHN 239
            V +FL+PK IP  LA  VPAQASFF+AYVVTSGWTS SSELFR+ PLICS  +R CC N
Sbjct: 468 QVNIFLDPKNIPAKLAVSVPAQASFFVAYVVTSGWTSTSSELFRIIPLICSLATR-CCKN 526

Query: 240 ASDDLEVPSIPYHSEIPRVIFSVLLGITYFFLAPLILPFLLVYYCLGYIIYRNQLLNVYA 299
             D+LEVPSI YH +IPR++F  LLGITYFFLAPLILPFLLVY CL YII+RNQ +NVYA
Sbjct: 527 PDDELEVPSIAYHKDIPRILFFGLLGITYFFLAPLILPFLLVYLCLAYIIFRNQFMNVYA 586

Query: 300 PKFETGGKFWPIVHNSTIFSLLLMHVIAIGIFGLKKLPLASSLVIPLPVLTLLFNEYCRK 359
           PK+ET GKFWPIVHNS IFSL+LMH IAIGIF LKKL  AS+L+ PLPVLTLLFNEYCRK
Sbjct: 587 PKYETAGKFWPIVHNSMIFSLVLMHAIAIGIFTLKKLSTASTLIFPLPVLTLLFNEYCRK 646

Query: 360 RFLPIFEAYPTECLVKKDREDQNDATMAEFYEKLVTAYQDPALMPVQYSGSSDGRTSPLL 419
           RFLPIF AY  E L+KKDRE++ND  M EF++KLVTAYQDPALMP+QYS + DG  SPLL
Sbjct: 647 RFLPIFIAYSAEVLIKKDREEENDPAMHEFFDKLVTAYQDPALMPIQYSATGDGLHSPLL 706

Query: 420 HAA 422
            +A
Sbjct: 707 SSA 709

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356572990|ref|XP_003554648.1| PREDICTED: uncharacterized membrane protein C2G11.09-like [Glycine max]

 Score =  635 bits (1639), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 307/423 (72%), Positives = 360/423 (85%)

Query: 1   MEQSSLAGKEVAAAFVSFNSRYGAAIALHIQQGVNPTEWVTEQAPAPQDVHWPFFSSSFM 60
           MEQSSL  KE+ AAFVSF +R+GAAIALHIQ+ VNPTEW+TE+AP P DV+WPFF+ SF+
Sbjct: 290 MEQSSLEAKELQAAFVSFKTRFGAAIALHIQESVNPTEWITEKAPEPHDVYWPFFTVSFI 349

Query: 61  KRWICKLAVVVACIALTILFLIPVVIVQGLTHLDQLETWFPFLKGVLNLTFISQVITGYL 120
           KRWI KL V VAC  +T+LFLIPV IVQGLTHLDQLE WFPFLKG+L L+ +SQVITGYL
Sbjct: 350 KRWISKLVVYVACAFITVLFLIPVAIVQGLTHLDQLEMWFPFLKGILRLSIVSQVITGYL 409

Query: 121 PSLILQLFLSFVPPIMIMFSSIQGHISLSNIEKSACSKVWWFTVWNIFFANALSGTALYH 180
           PSLILQLFLSFVPP MIM SS+QG+IS S I+KSAC+KV WFT+WNIFFAN LSG+ALY 
Sbjct: 410 PSLILQLFLSFVPPTMIMLSSLQGYISWSQIQKSACTKVLWFTIWNIFFANVLSGSALYR 469

Query: 181 VQVFLEPKKIPQVLAEGVPAQASFFIAYVVTSGWTSISSELFRMFPLICSFISRLCCHNA 240
           V VFLEPK+IP++LAE VP+QASFFIAYVVTSGWT+I+SELFR+  L+ +FISR  C N 
Sbjct: 470 VNVFLEPKEIPRILAEAVPSQASFFIAYVVTSGWTAIASELFRLTTLLSNFISRTFCRNN 529

Query: 241 SDDLEVPSIPYHSEIPRVIFSVLLGITYFFLAPLILPFLLVYYCLGYIIYRNQLLNVYAP 300
            DD E P IPYHSEIPR+    +LG+TYF LAPLILPFLL+Y+CLGYII+RNQLL VY P
Sbjct: 530 DDDFEPPLIPYHSEIPRIRLFGVLGVTYFILAPLILPFLLIYFCLGYIIFRNQLLKVYVP 589

Query: 301 KFETGGKFWPIVHNSTIFSLLLMHVIAIGIFGLKKLPLASSLVIPLPVLTLLFNEYCRKR 360
           K+ETGG+FWP VH+STIFSL+LMH+IAIG+FGLKKLPLAS L++PLP+LTLLFNEYC+KR
Sbjct: 590 KYETGGEFWPTVHSSTIFSLILMHIIAIGLFGLKKLPLASILILPLPILTLLFNEYCQKR 649

Query: 361 FLPIFEAYPTECLVKKDREDQNDATMAEFYEKLVTAYQDPALMPVQYSGSSDGRTSPLLH 420
           F PIF+ Y  ECL+KKDR DQN+  M+EFY+KL  AY DPALM V+YS  SD   SPLLH
Sbjct: 650 FFPIFKNYSAECLIKKDRADQNEHNMSEFYDKLANAYNDPALMRVKYSERSDSHRSPLLH 709

Query: 421 AAN 423
           ++ 
Sbjct: 710 SSE 712

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296088788|emb|CBI38238.3| unnamed protein product [Vitis vinifera]

 Score =  634 bits (1636), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 305/423 (72%), Positives = 356/423 (84%), Gaps = 2/423 (0%)

Query: 1   MEQS--SLAGKEVAAAFVSFNSRYGAAIALHIQQGVNPTEWVTEQAPAPQDVHWPFFSSS 58
           +EQS  SLAG++V AAFVSF SRY AAIA H+QQ +NPT+WV EQAP P DV+WPFFSSS
Sbjct: 464 LEQSEVSLAGEDVRAAFVSFKSRYDAAIAFHLQQSINPTQWVAEQAPEPHDVYWPFFSSS 523

Query: 59  FMKRWICKLAVVVACIALTILFLIPVVIVQGLTHLDQLETWFPFLKGVLNLTFISQVITG 118
           FM+RWI KL V+VA I LTILFLIPVVIVQGLT+L+QLETW PFLK +L LT +S+VITG
Sbjct: 524 FMRRWISKLLVIVAFILLTILFLIPVVIVQGLTNLNQLETWLPFLKSILTLTIVSEVITG 583

Query: 119 YLPSLILQLFLSFVPPIMIMFSSIQGHISLSNIEKSACSKVWWFTVWNIFFANALSGTAL 178
           YLPSLILQLFL  VPPIM  FSSIQG+++LS+IEKSAC+KV WFT+WN+FFAN LSG+AL
Sbjct: 584 YLPSLILQLFLKAVPPIMEFFSSIQGYMALSDIEKSACNKVLWFTIWNVFFANVLSGSAL 643

Query: 179 YHVQVFLEPKKIPQVLAEGVPAQASFFIAYVVTSGWTSISSELFRMFPLICSFISRLCCH 238
           Y + + L+PK IP  LA  VPAQASFFIAYVVTSGWT +SSELFR+ P ICS I +    
Sbjct: 644 YLINIILDPKNIPAKLAVAVPAQASFFIAYVVTSGWTGVSSELFRVIPFICSLIRKPFVK 703

Query: 239 NASDDLEVPSIPYHSEIPRVIFSVLLGITYFFLAPLILPFLLVYYCLGYIIYRNQLLNVY 298
           +  DD+EVPSIPYH EIP+++F  LLGITYFFLAPLILPFLLVY CLGYII+RNQ LNVY
Sbjct: 704 SEDDDIEVPSIPYHKEIPKILFFGLLGITYFFLAPLILPFLLVYLCLGYIIFRNQFLNVY 763

Query: 299 APKFETGGKFWPIVHNSTIFSLLLMHVIAIGIFGLKKLPLASSLVIPLPVLTLLFNEYCR 358
           APK+ET GKFWPIVHNS IFSL+LMH IAIGIF +KKL +AS+L+ PLPVLTLLFNEYCR
Sbjct: 764 APKYETAGKFWPIVHNSMIFSLVLMHAIAIGIFTVKKLSIASTLIFPLPVLTLLFNEYCR 823

Query: 359 KRFLPIFEAYPTECLVKKDREDQNDATMAEFYEKLVTAYQDPALMPVQYSGSSDGRTSPL 418
           KRFLPIF AY  E L+K+DR+DQN+ +M EF+ +LVTAYQDPAL P+QYS + D  TSPL
Sbjct: 824 KRFLPIFIAYSAESLIKRDRQDQNEPSMDEFFHELVTAYQDPALAPIQYSSNRDSLTSPL 883

Query: 419 LHA 421
           + +
Sbjct: 884 ISS 886

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225464071|ref|XP_002269926.1| PREDICTED: uncharacterized membrane protein C2G11.09 [Vitis vinifera]

 Score =  634 bits (1635), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 305/423 (72%), Positives = 356/423 (84%), Gaps = 2/423 (0%)

Query: 1   MEQS--SLAGKEVAAAFVSFNSRYGAAIALHIQQGVNPTEWVTEQAPAPQDVHWPFFSSS 58
           +EQS  SLAG++V AAFVSF SRY AAIA H+QQ +NPT+WV EQAP P DV+WPFFSSS
Sbjct: 291 LEQSEVSLAGEDVRAAFVSFKSRYDAAIAFHLQQSINPTQWVAEQAPEPHDVYWPFFSSS 350

Query: 59  FMKRWICKLAVVVACIALTILFLIPVVIVQGLTHLDQLETWFPFLKGVLNLTFISQVITG 118
           FM+RWI KL V+VA I LTILFLIPVVIVQGLT+L+QLETW PFLK +L LT +S+VITG
Sbjct: 351 FMRRWISKLLVIVAFILLTILFLIPVVIVQGLTNLNQLETWLPFLKSILTLTIVSEVITG 410

Query: 119 YLPSLILQLFLSFVPPIMIMFSSIQGHISLSNIEKSACSKVWWFTVWNIFFANALSGTAL 178
           YLPSLILQLFL  VPPIM  FSSIQG+++LS+IEKSAC+KV WFT+WN+FFAN LSG+AL
Sbjct: 411 YLPSLILQLFLKAVPPIMEFFSSIQGYMALSDIEKSACNKVLWFTIWNVFFANVLSGSAL 470

Query: 179 YHVQVFLEPKKIPQVLAEGVPAQASFFIAYVVTSGWTSISSELFRMFPLICSFISRLCCH 238
           Y + + L+PK IP  LA  VPAQASFFIAYVVTSGWT +SSELFR+ P ICS I +    
Sbjct: 471 YLINIILDPKNIPAKLAVAVPAQASFFIAYVVTSGWTGVSSELFRVIPFICSLIRKPFVK 530

Query: 239 NASDDLEVPSIPYHSEIPRVIFSVLLGITYFFLAPLILPFLLVYYCLGYIIYRNQLLNVY 298
           +  DD+EVPSIPYH EIP+++F  LLGITYFFLAPLILPFLLVY CLGYII+RNQ LNVY
Sbjct: 531 SEDDDIEVPSIPYHKEIPKILFFGLLGITYFFLAPLILPFLLVYLCLGYIIFRNQFLNVY 590

Query: 299 APKFETGGKFWPIVHNSTIFSLLLMHVIAIGIFGLKKLPLASSLVIPLPVLTLLFNEYCR 358
           APK+ET GKFWPIVHNS IFSL+LMH IAIGIF +KKL +AS+L+ PLPVLTLLFNEYCR
Sbjct: 591 APKYETAGKFWPIVHNSMIFSLVLMHAIAIGIFTVKKLSIASTLIFPLPVLTLLFNEYCR 650

Query: 359 KRFLPIFEAYPTECLVKKDREDQNDATMAEFYEKLVTAYQDPALMPVQYSGSSDGRTSPL 418
           KRFLPIF AY  E L+K+DR+DQN+ +M EF+ +LVTAYQDPAL P+QYS + D  TSPL
Sbjct: 651 KRFLPIFIAYSAESLIKRDRQDQNEPSMDEFFHELVTAYQDPALAPIQYSSNRDSLTSPL 710

Query: 419 LHA 421
           + +
Sbjct: 711 ISS 713

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357496519|ref|XP_003618548.1| Membrane protein, putative [Medicago truncatula] gi|355493563|gb|AES74766.1| Membrane protein, putative [Medicago truncatula]

 Score =  630 bits (1625), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 312/432 (72%), Positives = 362/432 (83%), Gaps = 9/432 (2%)

Query: 1   MEQSSLAGKEVAAAFVSFNSRYGAAIALHIQQGVNPTEWVTEQAPAPQDVHWPFFSSSFM 60
           MEQSSLA KEV AAFVSF +R+GAAIALHIQ+GVNPTEW+TE+AP P DV+WPFF+ SF+
Sbjct: 289 MEQSSLASKEVPAAFVSFKTRFGAAIALHIQEGVNPTEWITEEAPEPHDVYWPFFTVSFL 348

Query: 61  KRWICKLAVVVACIALTILFLIPVVIVQGLTHLDQLETWFPFLKGVLNLTFISQVITGYL 120
           KRWI KL V VA   LT+LFLIPV IVQGLTHL+QLET+FPFLKGVL L+ +SQVITGYL
Sbjct: 349 KRWISKLVVYVAYTTLTVLFLIPVAIVQGLTHLEQLETFFPFLKGVLRLSVVSQVITGYL 408

Query: 121 PSLILQLFLSFVPPIMIMFSSIQGHISLSNIEKSACSKVWWFTVWNIFFANALSGTALYH 180
           PSLILQLFLS+VPP MIM SS+QG+IS S I+KSAC+KV  FT+WNIFFAN LSG+ALY 
Sbjct: 409 PSLILQLFLSYVPPTMIMLSSLQGYISWSQIQKSACTKVLLFTIWNIFFANVLSGSALYR 468

Query: 181 VQVFLEPKKIPQVLAEGVPAQ---------ASFFIAYVVTSGWTSISSELFRMFPLICSF 231
           V +FLEPK IP+VLAE VP+Q         ASFFIAYVVTSGWT+I+SELFR+  LI +F
Sbjct: 469 VNIFLEPKNIPRVLAEAVPSQVRMKFLSHNASFFIAYVVTSGWTTIASELFRLSTLISNF 528

Query: 232 ISRLCCHNASDDLEVPSIPYHSEIPRVIFSVLLGITYFFLAPLILPFLLVYYCLGYIIYR 291
           +SR  C N  DD E PSIPYHSEIPR+    LLG+TYFFLAPLILPFLL+Y+CLGYII+R
Sbjct: 529 LSRTFCKNGDDDFEPPSIPYHSEIPRIRLFGLLGVTYFFLAPLILPFLLIYFCLGYIIFR 588

Query: 292 NQLLNVYAPKFETGGKFWPIVHNSTIFSLLLMHVIAIGIFGLKKLPLASSLVIPLPVLTL 351
           NQ L VY PKFETGG+FWP VHNSTIFSL+LMHVIAIGIFGLKKLPLAS+L +PLP+LTL
Sbjct: 589 NQFLKVYVPKFETGGEFWPTVHNSTIFSLILMHVIAIGIFGLKKLPLASALTLPLPILTL 648

Query: 352 LFNEYCRKRFLPIFEAYPTECLVKKDREDQNDATMAEFYEKLVTAYQDPALMPVQYSGSS 411
           LFNEYC+KRF PIF+ +P ECL+KKDR D+ +  M+EFY+K+  AY DPALMPVQYS   
Sbjct: 649 LFNEYCQKRFRPIFKNFPAECLIKKDRADEIEHNMSEFYDKMENAYNDPALMPVQYSERF 708

Query: 412 DGRTSPLLHAAN 423
           D + SPLLH++ 
Sbjct: 709 DSQRSPLLHSSQ 720

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357496521|ref|XP_003618549.1| Membrane protein, putative [Medicago truncatula] gi|355493564|gb|AES74767.1| Membrane protein, putative [Medicago truncatula]

 Score =  630 bits (1624), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 312/432 (72%), Positives = 362/432 (83%), Gaps = 9/432 (2%)

Query: 1   MEQSSLAGKEVAAAFVSFNSRYGAAIALHIQQGVNPTEWVTEQAPAPQDVHWPFFSSSFM 60
           MEQSSLA KEV AAFVSF +R+GAAIALHIQ+GVNPTEW+TE+AP P DV+WPFF+ SF+
Sbjct: 1   MEQSSLASKEVPAAFVSFKTRFGAAIALHIQEGVNPTEWITEEAPEPHDVYWPFFTVSFL 60

Query: 61  KRWICKLAVVVACIALTILFLIPVVIVQGLTHLDQLETWFPFLKGVLNLTFISQVITGYL 120
           KRWI KL V VA   LT+LFLIPV IVQGLTHL+QLET+FPFLKGVL L+ +SQVITGYL
Sbjct: 61  KRWISKLVVYVAYTTLTVLFLIPVAIVQGLTHLEQLETFFPFLKGVLRLSVVSQVITGYL 120

Query: 121 PSLILQLFLSFVPPIMIMFSSIQGHISLSNIEKSACSKVWWFTVWNIFFANALSGTALYH 180
           PSLILQLFLS+VPP MIM SS+QG+IS S I+KSAC+KV  FT+WNIFFAN LSG+ALY 
Sbjct: 121 PSLILQLFLSYVPPTMIMLSSLQGYISWSQIQKSACTKVLLFTIWNIFFANVLSGSALYR 180

Query: 181 VQVFLEPKKIPQVLAEGVPAQ---------ASFFIAYVVTSGWTSISSELFRMFPLICSF 231
           V +FLEPK IP+VLAE VP+Q         ASFFIAYVVTSGWT+I+SELFR+  LI +F
Sbjct: 181 VNIFLEPKNIPRVLAEAVPSQVRMKFLSHNASFFIAYVVTSGWTTIASELFRLSTLISNF 240

Query: 232 ISRLCCHNASDDLEVPSIPYHSEIPRVIFSVLLGITYFFLAPLILPFLLVYYCLGYIIYR 291
           +SR  C N  DD E PSIPYHSEIPR+    LLG+TYFFLAPLILPFLL+Y+CLGYII+R
Sbjct: 241 LSRTFCKNGDDDFEPPSIPYHSEIPRIRLFGLLGVTYFFLAPLILPFLLIYFCLGYIIFR 300

Query: 292 NQLLNVYAPKFETGGKFWPIVHNSTIFSLLLMHVIAIGIFGLKKLPLASSLVIPLPVLTL 351
           NQ L VY PKFETGG+FWP VHNSTIFSL+LMHVIAIGIFGLKKLPLAS+L +PLP+LTL
Sbjct: 301 NQFLKVYVPKFETGGEFWPTVHNSTIFSLILMHVIAIGIFGLKKLPLASALTLPLPILTL 360

Query: 352 LFNEYCRKRFLPIFEAYPTECLVKKDREDQNDATMAEFYEKLVTAYQDPALMPVQYSGSS 411
           LFNEYC+KRF PIF+ +P ECL+KKDR D+ +  M+EFY+K+  AY DPALMPVQYS   
Sbjct: 361 LFNEYCQKRFRPIFKNFPAECLIKKDRADEIEHNMSEFYDKMENAYNDPALMPVQYSERF 420

Query: 412 DGRTSPLLHAAN 423
           D + SPLLH++ 
Sbjct: 421 DSQRSPLLHSSQ 432

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	424
TAIR|locus:2102117	703	HYP1 "hypothetical protein 1"	0.971	0.586	0.645	2.8e-146
TAIR|locus:2007126	711	AT1G69450 [Arabidopsis thalian	0.990	0.590	0.598	9.5e-137
TAIR|locus:504956093	1041	RXW8 [Arabidopsis thaliana (ta	0.952	0.388	0.455	1.8e-96
TAIR|locus:2201876	762	AT1G10090 "AT1G10090" [Arabido	0.959	0.534	0.444	1e-93
TAIR|locus:2031735	806	AT1G32090 "AT1G32090" [Arabido	0.912	0.480	0.346	8.6e-73
TAIR|locus:2096991	712	AT3G54510 [Arabidopsis thalian	0.978	0.582	0.371	1.1e-71
TAIR|locus:2140210	785	AT4G02900 [Arabidopsis thalian	0.912	0.492	0.339	1.2e-67
TAIR|locus:2089850	756	AT3G21620 "AT3G21620" [Arabido	0.919	0.515	0.323	5.2e-65
TAIR|locus:2130130	761	AT4G15430 "AT4G15430" [Arabido	0.912	0.508	0.327	6e-64
TAIR|locus:2008860	771	AT1G11960 "AT1G11960" [Arabido	0.931	0.512	0.316	7.6e-64

TAIR|locus:2102117 HYP1 "hypothetical protein 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 1429 (508.1 bits), Expect = 2.8e-146, P = 2.8e-146
 Identities = 270/418 (64%), Positives = 335/418 (80%)

Query:     1 MEQSSLAGKEVAAAFVSFNSRYGAAIALHIQQGVNPTEWVTEQAPAPQDVHWPFFSSSFM 60
             ++QS LAG+EV AAFVSF +R+GAAIA +IQQG++PT+W+TE AP P+DVHWPFF++SF+
Sbjct:   291 LKQSLLAGEEVPAAFVSFRTRHGAAIATNIQQGIDPTQWLTEAAPEPEDVHWPFFTASFV 350

Query:    61 KRWICKLAVVVACIALTILFLIPVVIVQGLTHLDQLETWFPFLKGVLNLTFISQVITGYL 120
             +RWI  + V+VA +AL IL+++PVV+VQGL +L QLETWFPFLKG+LN+  +SQVITGYL
Sbjct:   351 RRWISNVVVLVAFVALLILYIVPVVLVQGLANLHQLETWFPFLKGILNMKIVSQVITGYL 410

Query:   121 PSLILQLFLSFVPPIMIMFSSIQGHISLSNIEKSACSKVWWFTVWNIFFANALSGTALYH 180
             PSLI QLFL  VPPIM++ SS+QG IS S IEKSAC K+  FTVWN FFAN LSG+ALY 
Sbjct:   411 PSLIFQLFLLIVPPIMLLLSSMQGFISHSQIEKSACIKLLIFTVWNSFFANVLSGSALYR 470

Query:   181 VQVFLEPKKIPQVLAEGVPAQASFFIAYVVTSGWTSISSELFRMFPLICSFISRLCCHNA 240
             V VFLEPK IP+VLA  VPAQASFF++YVVTSGWT +SSE+ R+ PL+ SFI++L     
Sbjct:   471 VNVFLEPKTIPRVLAAAVPAQASFFVSYVVTSGWTGLSSEILRLVPLLWSFITKLFGKED 530

Query:   241 SDDLEVPSIPYHSEIPRVIFSVLLGITYXXXXXXXXXXXXVYYCLGYIIYRNQLLNVYAP 300
               + EVPS P+  EIPR++F  LLGITY            VYYCLGYIIYRNQLLNVYA 
Sbjct:   531 DKEFEVPSTPFCQEIPRILFFGLLGITYFFLSPLILPFLLVYYCLGYIIYRNQLLNVYAA 590

Query:   301 KFETGGKFWPIVHNSTIFSLLLMHVIAIGIFGLKKLPLASSLVIPLPVLTLLFNEYCRKR 360
             K+ETGGKFWPIVH+ TIFSL+LMH+IA+G+FGLK+LP+ASSL IPLPVLT+LF+ YC++R
Sbjct:   591 KYETGGKFWPIVHSYTIFSLVLMHIIAVGLFGLKELPVASSLTIPLPVLTVLFSIYCQRR 650

Query:   361 FLPIFEAYPTECLVKKDREDQNDATMAEFYEKLVTAYQDPALMPVQYSGSSDGRT-SP 417
             FLP F++YPT+CLV KD+ D+ +  M+EFY +LV AY+DPAL     S S D R  SP
Sbjct:   651 FLPNFKSYPTQCLVNKDKADEREQNMSEFYSELVVAYRDPAL-----SASQDSRDISP 703

GO:0005886 "plasma membrane" evidence=ISM

GO:0009507 "chloroplast" evidence=ISM

GO:0016020 "membrane" evidence=IEA

TAIR|locus:2007126 AT1G69450 [Arabidopsis thaliana (taxid:3702)]

 Score = 1339 (476.4 bits), Expect = 9.5e-137, P = 9.5e-137
 Identities = 253/423 (59%), Positives = 316/423 (74%)

Query:     5 SLAGKEVAAAFVSFNSRYGAAIALHIQQGVNPTEWVTEQAPAPQDVHWPFFSSSFMKRWI 64
             S  GKEV AAFVSF SRYGAA ALH+ Q +NPT W+TE AP P DVHWPFFS+SFM++W+
Sbjct:   289 SAPGKEVRAAFVSFKSRYGAATALHMPQSINPTYWLTEPAPEPHDVHWPFFSASFMQKWL 348

Query:    65 CKLAVVVACIALTILFLIPVVIVQGLTHLDQLETWFPFLKGVLNLTFISQVITGYLPSLI 124
              K+ VV AC+ LTILFL+PVV+VQGLT+L  LE  FPFL  +L++  +SQ+ITGYLPSLI
Sbjct:   349 AKILVVFACLLLTILFLVPVVLVQGLTNLPALEFMFPFLSLILSMKVVSQIITGYLPSLI 408

Query:   125 LQLFLSFVPPIMIMFSSIQGHISLSNIEKSACSKVWWFTVWNIFFANALSGTALYHVQVF 184
             LQ  L  VPP M   SSIQGHI  S+I+KSAC+KV WFT+WN+FFA   SG+A Y + V 
Sbjct:   409 LQTSLKVVPPTMEFLSSIQGHICHSDIQKSACNKVIWFTIWNVFFATVFSGSAFYKLSVI 468

Query:   185 LEPKKIPQVLAEGVPAQASFFIAYVVTSGWTSISSELFRMFPLICSFISRLCCHNASDDL 244
             L+PK+IP  LA  VPAQASFFIAYVVT+GWT   +ELFR+ P + S+I R    +  ++ 
Sbjct:   469 LDPKQIPLKLAVAVPAQASFFIAYVVTTGWTDTLTELFRVVPFMVSYIKRSFEPSDENEF 528

Query:   245 EVPSIPYHSEIPRVIFSVLLGITYXXXXXXXXXXXXVYYCLGYIIYRNQLLNVYAPKFET 304
              VP + YH + PRV+F  LLGITY            +Y+ L YIIYRNQ +NVYAPKF+T
Sbjct:   529 VVPPMRYHRDTPRVLFFGLLGITYFFLAPLILPFILLYFILAYIIYRNQFMNVYAPKFDT 588

Query:   305 GGKFWPIVHNSTIFSLLLMHVIAIGIFGLKKLPLASSLVIPLPVLTLLFNEYCRKRFLPI 364
             GG FWP++H + IFSL+LM  IAIG+F LKK+ LA+ L++PLPV TLLFNE+CRKRF+PI
Sbjct:   589 GGMFWPMIHYTMIFSLVLMQAIAIGLFALKKMELATYLLVPLPVFTLLFNEFCRKRFMPI 648

Query:   365 FEAYPTECLVKKDREDQNDATMAEFYEKLVTAYQDPALMPVQYSGS---SDGRTSPLLHA 421
             F  YP E L K+D+ED+ND TM EFY  LV+AY+DPAL+P+++SGS   +D  TSPLL  
Sbjct:   649 FTDYPAEVLTKRDKEDRNDPTMPEFYNNLVSAYKDPALLPLRFSGSGSRNDSLTSPLLSF 708

Query:   422 ANV 424
             + V
Sbjct:   709 SEV 711

GO:0005886 "plasma membrane" evidence=ISM

GO:0016020 "membrane" evidence=IEA

TAIR|locus:504956093 RXW8 [Arabidopsis thaliana (taxid:3702)]

 Score = 959 (342.6 bits), Expect = 1.8e-96, P = 1.8e-96
 Identities = 184/404 (45%), Positives = 256/404 (63%)

Query:     9 KEVAAAFVSFNSRYGAAIALHIQQGVNPTEWVTEQAPAPQDVHWPFFSSSFMKRWICKLA 68
             +E +AAFV F +RY A +   + Q  NP  WVT+ AP P DV+W   +  + + WI K+A
Sbjct:   594 QERSAAFVFFKTRYDALVVSEVLQSSNPMLWVTDLAPEPHDVYWKNLNIPYRQLWIRKIA 653

Query:    69 VVVACIALTILFLIPVVIVQGLTHLDQLETWFPFLKGVLNLTFISQVITGYLPSLILQLF 128
              +V  +A   +FLIPV  +QGLT L QL   FPFL+G+L+  FI+QVITGYLPS+IL LF
Sbjct:   654 TLVGAVAFMFVFLIPVTFIQGLTQLVQLSHAFPFLRGILSKNFINQVITGYLPSVILILF 713

Query:   129 LSFVPPIMIMFSSIQGHISLSNIEKSACSKVWWFTVWNIFFANALSGTALYHVQVFLEPK 188
                VPP+M+ FS+++G IS S  +KSAC KV +FT+WN+FF N LSG+ +  + VF   +
Sbjct:   714 FYAVPPLMMYFSALEGCISRSIRKKSACIKVLYFTIWNVFFVNILSGSVIRQLNVFSSVR 773

Query:   189 KIPQVLAEGVPAQASFFIAYVVTSGWTSISSELFRMFPLICSFISRLCCHNASDDLEVPS 248
              IP  LA  VP QA FF+ Y  TSGW S++ E+ +   LI + ++++   N  +  E   
Sbjct:   774 DIPAQLARAVPTQAGFFMTYCFTSGWASLACEIMQPMALIWNLVAKVVTKNEDESYETLR 833

Query:   249 IPYHSEIPRVIFSVLLGITYXXXXXXXXXXXXVYYCLGYIIYRNQLLNVYAPKFETGGKF 308
              PYH+EIPR++   LLG T             +Y+ L Y+IY+NQ+LNVY  K+E+GG++
Sbjct:   834 FPYHTEIPRLLLFGLLGFTNSVIAPLILPFLLIYFFLAYLIYKNQILNVYITKYESGGQY 893

Query:   309 WPIVHNSTIFSLLLMHVIAIGIFGLKKLPLASSLVIPLPVLTLLFNEYCRKRFLPIFEAY 368
             WPI HN+TIFSL+L  +IA+G FGLK   +AS   IPL +LTLLF+EYCR+RF PIF   
Sbjct:   894 WPIFHNTTIFSLILTQIIALGFFGLKLSTVASGFTIPLILLTLLFSEYCRQRFAPIFNKN 953

Query:   369 PTECLVKKDREDQNDATMAEFYEKLVTAYQDPALMPVQYSGSSD 412
             P + L+  DR D+    M E ++KL   Y    L   + S  ++
Sbjct:   954 PAQVLIDMDRADEISGKMEELHKKLHNVYSQIPLHSQKSSSKAE 997

GO:0005576 "extracellular region" evidence=ISM

GO:0006629 "lipid metabolic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0016020 "membrane" evidence=IEA

GO:0016298 "lipase activity" evidence=IEA

GO:0016788 "hydrolase activity, acting on ester bonds" evidence=IEA

TAIR|locus:2201876 AT1G10090 "AT1G10090" [Arabidopsis thaliana (taxid:3702)]

 Score = 933 (333.5 bits), Expect = 1.0e-93, P = 1.0e-93
 Identities = 182/409 (44%), Positives = 248/409 (60%)

Query:     9 KEVAAAFVSFNSRYGAAIALHIQQGVNPTEWVTEQAPAPQDVHWPFFSSSFMKRWICKLA 68
             +E   AFV F SRY A +   + Q  NP  WV + AP P DVHW      + + W+ ++A
Sbjct:   296 EERPVAFVFFKSRYDALVVSEVLQTPNPMLWVADLAPEPHDVHWRNLRIPYRQLWMRRIA 355

Query:    69 VVVACIALTILFLIPVVIVQGLTHLDQLETWFPFLKGVLNLTFISQVITGYLPSLILQLF 128
              +V  IA   +FL PV  VQGLT L  L   FPFLK +LN  F+ QVITGYLPS+IL LF
Sbjct:   356 TLVGAIAFMFVFLFPVTFVQGLTQLPTLSKNFPFLKDLLNRRFMEQVITGYLPSVILVLF 415

Query:   129 LSFVPPIMIMFSSIQGHISLSNIEKSACSKVWWFTVWNIFFANALSGTALYHVQVFLEPK 188
                VPP+M+ FS+++G +S S  +KSAC K+ +FT+WN+FF N LSG+ +    V    +
Sbjct:   416 FYTVPPLMMYFSTLEGCVSRSQRKKSACLKILYFTIWNVFFVNILSGSVIRQFTVLNSVR 475

Query:   189 KIPQVLAEGVPAQASFFIAYVVTSGWTSISSELFRMFPLICSFISRLCCHNASDDLEVPS 248
              +P  LA+ VPAQA FF+ Y  TSGW  ++ E+ +   LI + I+++   N  +  E   
Sbjct:   476 DVPAQLAKLVPAQAGFFMTYCFTSGWAGLACEIMQPVGLIWNLIAKVIVKNKEESYETLR 535

Query:   249 IPYHSEIPRVIFSVLLGITYXXXXXXXXXXXXVYYCLGYIIYRNQLLNVYAPKFETGGKF 308
              PYH+EIPR++   LLG T             +Y+   Y+IY+NQ++NVY  K+E+GG++
Sbjct:   536 FPYHTEIPRLLLFGLLGFTNSVIAPLILPFLLIYFFFAYLIYKNQIINVYITKYESGGQY 595

Query:   309 WPIVHNSTIFSLLLMHVIAIGIFGLKKLPLASSLVIPLPVLTLLFNEYCRKRFLPIFEAY 368
             WP+ HN+TIFSL+L  VIA+G FGLK   +AS   IPL +LTLLF+EYCR+RF PIF+ Y
Sbjct:   596 WPVFHNTTIFSLILSQVIALGFFGLKLSTVASGFTIPLILLTLLFSEYCRQRFAPIFQKY 655

Query:   369 PTECLVKKDREDQNDATMAEFYEKLVTAYQDPALMPVQYSGSSDGRTSP 417
             P E L+  DR D+    M E +  L  AY    +       S  G TSP
Sbjct:   656 PAEILIAMDRADEMTGKMEEIHNNLKVAYSQ--IPTCSEESSKAGCTSP 702

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA

TAIR|locus:2031735 AT1G32090 "AT1G32090" [Arabidopsis thaliana (taxid:3702)]

 Score = 710 (255.0 bits), Expect = 8.6e-73, Sum P(2) = 8.6e-73
 Identities = 136/393 (34%), Positives = 224/393 (56%)

Query:    14 AFVSFNSRYGAAIALHIQQGVNPTEWVTEQAPAPQDVHWPFFSSSFMKRWICKLAVVVAC 73
             AFVSF+SR+GAA+    QQ  NPT W+T  AP P+D++W   +  F+   I KL + V+ 
Sbjct:   322 AFVSFDSRWGAAVCAQTQQSKNPTLWLTSSAPEPRDIYWQNLAIPFISLTIRKLVIGVSV 381

Query:    74 IALTILFLIPVVIVQGLTHLDQLETWFPFLKGVLNLTFISQVITGYLPSLILQLFLSFVP 133
              AL   ++IP+  VQ L +L+ L+   PFL+ V  L FI   + G+LP L L++FL  +P
Sbjct:   382 FALVFFYMIPIAFVQSLANLEGLDRVAPFLRPVTRLDFIKSFLQGFLPGLALKIFLWILP 441

Query:   134 PIMIMFSSIQGHISLSNIEKSACSKVWWFTVWNIFFANALSGTALYHVQVFLE--PKKIP 191
              ++++ S I+G+I+LS +E+ A +K ++F + N+F  + ++GTA   +  FL   P +IP
Sbjct:   442 TVLLIMSKIEGYIALSTLERRAAAKYYYFMLVNVFLGSIIAGTAFEQLHSFLHQSPSQIP 501

Query:   192 QVLAEGVPAQASFFIAYVVTSGWTSISSELFRMFPLICSFISRLCCHNASDD----LEVP 247
             + +   +P +A+FFI Y++  GW  I+ E+ R+ PL+   +  +      +D    ++  
Sbjct:   502 RTIGVSIPMKATFFITYIMVDGWAGIAGEILRLKPLVIFHLKNMFIVKTEEDRVRAMDPG 561

Query:   248 SIPYHSEIPRVIFSVLLGITYXXXXXXXXXXXXVYYCLGYIIYRNQLLNVYAPKFETGGK 307
              + +   IP +    LLGI Y            +++   Y++YR+Q++NVY  ++E+ G 
Sbjct:   562 FVDFKETIPSLQLYFLLGIVYTAVTPILLPFILIFFAFAYLVYRHQIINVYNQQYESCGA 621

Query:   308 FWPIVHNSTIFSLLLMHVIAIGIFGLKKLPLASSLVIPLPVLTLLFNEYCRKRFLPIFEA 367
             FWP VH   I SLL+  ++ +G+   KK   ++ L+I LP+LTL F++YC+ RF P F  
Sbjct:   622 FWPHVHGRIIASLLISQLLLMGLLASKKAADSTPLLIILPILTLSFHKYCKHRFEPAFRQ 681

Query:   368 YPTECLVKKDREDQNDATMAEFYEKLVTAYQDP 400
             YP E  + KD+ ++           L  AY  P
Sbjct:   682 YPLEEAMAKDKLEKETEPELNMKADLADAYLHP 714

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0016020 "membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

TAIR|locus:2096991 AT3G54510 [Arabidopsis thaliana (taxid:3702)]

 Score = 725 (260.3 bits), Expect = 1.1e-71, P = 1.1e-71
 Identities = 157/423 (37%), Positives = 236/423 (55%)

Query:     3 QSSLAGKEVAAAFVSFNSRYGAAIALHIQQGVNPTEWVTEQAPAPQDVHWPFFSSSFMKR 62
             ++ L  KE+  AFV+F SR  AA+A   QQ  NP E +TE AP P+DV W   +      
Sbjct:   287 ETMLREKELPVAFVTFKSRRNAALAAQTQQHSNPLELITEMAPEPRDVSWRNLAIPQKIL 346

Query:    63 WICKLAVVVACIALTILFLIPVVIVQGLTHLDQLETWFPFLKGVLNLTFISQVITGYLPS 122
              + K+ V++A   LTI F IPV  VQG+   ++L+ WFP    +  +  +S V+TGYLPS
Sbjct:   347 PLNKIGVILAAALLTIFFAIPVTAVQGIAKYEKLKKWFPPAMAIEFIPGLSSVVTGYLPS 406

Query:   123 LILQLFLSFVPPIMIMFSSIQGHISLSNIEKSACSKVWWFTVWNIFFANALSGTALYHVQ 182
              IL+ F+  +P  M+  + + G IS S  E  AC+ V++F + N+FF + +SG+ L  + 
Sbjct:   407 AILKGFMYIIPFAMLGLAYLGGSISNSKEEIKACNMVFYFLMGNVFFLSLISGSLLDEIG 466

Query:   183 VFL-EPKKIPQVLAEGVPAQASFFIAYVVTSGWTSISSELFRMFPLICSFISRLCCHNAS 241
              +L  P+ IP  LA  V AQA FF+ Y++T G +  S E+ ++  LI   I R   +   
Sbjct:   467 EYLTHPRDIPSHLAAAVSAQAEFFMTYILTDGLSGFSLEILQL-GLILFDIIRSYTYGRG 525

Query:   242 DDLEVP---SIPYHSEIPRVIFSVLLGITYXXXXXXXXXXXXVYYCLGYIIYRNQLLNVY 298
              +   P   S PY   IP V  S+++G+ Y             Y+CLGYI+Y NQ+ +VY
Sbjct:   526 KE-RTPYLFSFPYFRVIPTVSLSIMIGMIYAVVAPLMLPFLVGYFCLGYIVYFNQMEDVY 584

Query:   299 APKFETGGKFWPIVHNSTIFSLLLMHVIAIGIFGLKKLPLASSLVIPLPVLTLLFNEYCR 358
                ++T G+FWP +H+    S++LM +  +G+FGLK  P A+   +PL ++T+ +NEYC+
Sbjct:   585 ETTYDTCGRFWPFIHHYIFVSIILMQITMVGLFGLKSKPSAAIATVPLILITIAYNEYCK 644

Query:   359 KRFLPIFEAYPTECLVKKDREDQNDATMAEFYEKLVTAYQ--DPALMPVQYSGSSDGRTS 416
              RFLP F+ +P +  V+ D ED+ +  M   Y    TAY    P L  V  + S    + 
Sbjct:   645 IRFLPSFKHFPIQTAVEIDEEDEKNGEMETHYVDAATAYNRHQPCLERVSSAESPTNLSQ 704

Query:   417 PLL 419
             PLL
Sbjct:   705 PLL 707

GO:0009507 "chloroplast" evidence=ISM

GO:0016020 "membrane" evidence=IEA

GO:0009686 "gibberellin biosynthetic process" evidence=RCA

GO:0009740 "gibberellic acid mediated signaling pathway" evidence=RCA

TAIR|locus:2140210 AT4G02900 [Arabidopsis thaliana (taxid:3702)]

 Score = 687 (246.9 bits), Expect = 1.2e-67, P = 1.2e-67
 Identities = 134/395 (33%), Positives = 218/395 (55%)

Query:    13 AAFVSFNSRYGAAIALHIQQGVNPTEWVTEQAPAPQDVHWPFFSSSFMKRWICKLAVVVA 72
             AAFVSF SR+G A+    QQ  NPT W+TE AP P+DV W   +  +++  I +L   VA
Sbjct:   319 AAFVSFRSRWGTAVCAQTQQCHNPTIWLTEWAPEPRDVFWDNLAIPYVELSIRRLLTTVA 378

Query:    73 CIALTILFLIPVVIVQGLTHLDQLETWFPFLKGVLNLTFISQVITGYLPSLILQLFLSFV 132
                L   F+IP+  VQ L +L+ ++   PFLK V+ +  +  VI G+LP + L++FL  +
Sbjct:   379 LFFLIFCFMIPIAFVQSLANLEGIQKVLPFLKPVIEMKTVKSVIQGFLPGIALKIFLIIL 438

Query:   133 PPIMIMFSSIQGHISLSNIEKSACSKVWWFTVWNIFFANALSGTALYHVQVFLE--PKKI 190
             P I++  S I+G+ SLS +++ +  K +WF + N+F  + ++GTA   ++ FLE  P +I
Sbjct:   439 PTILMTMSQIEGYTSLSYLDRRSAEKYFWFIIVNVFLGSIITGTAFQQLKSFLEQPPTEI 498

Query:   191 PQVLAEGVPAQASFFIAYVVTSGWTSISSELFRMFPLICSFISRLCCHNASDDLEVPSIP 250
             P+ +   +P +A+FFI Y++  GW  I++E+ R+ PL+   +          D +    P
Sbjct:   499 PKTVGVSIPMKATFFITYIMVDGWAGIAAEILRVVPLVIFHLKNTFLVKTEQDRQQAMDP 558

Query:   251 YHSEI----PRVIFSVLLGITYXXXXXXXXXXXXVYYCLGYIIYRNQLLNVYAPKFETGG 306
              H +     PR+ F  LLG+ Y            V++   Y+++R+Q++NVY  K+E+G 
Sbjct:   559 GHLDFATSEPRIQFYFLLGLVYAAVAPILLPFIIVFFAFAYVVFRHQVINVYDQKYESGA 618

Query:   307 KFWPIVHNSTIFSLLLMHVIAIGIFGLKKLPLASSLVIPLPVLTLLFNEYCRKRFLPIFE 366
             ++WP VH   I  L++  ++ +G+   KK    ++L++P P+LT  F  YC  RF   F 
Sbjct:   619 RYWPDVHRRLIICLIISQLLMMGLLSTKKFAKVTALLLPQPILTFWFYRYCAGRFESAFS 678

Query:   367 AYPT-ECLVKKDREDQNDATMAEFYEKLVTAYQDP 400
              +P  E +VK   E   +  +    E L  AY  P
Sbjct:   679 KFPLQEAMVKDTLEKATEPNL-NLKEYLKDAYVHP 712

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA

TAIR|locus:2089850 AT3G21620 "AT3G21620" [Arabidopsis thaliana (taxid:3702)]

 Score = 662 (238.1 bits), Expect = 5.2e-65, P = 5.2e-65
 Identities = 128/396 (32%), Positives = 221/396 (55%)

Query:    11 VAAAFVSFNSRYGAAIALHIQQGVNPTEWVTEQAPAPQDVHWPFFSSSFMKRWICKLAVV 70
             V AAFVSF  R+GA +    QQ  NPTEW+TE AP P+D++W   +  +++  I +L + 
Sbjct:   317 VPAAFVSFKKRWGAVVCSQTQQSRNPTEWLTEWAPEPRDIYWDNLALPYVQLTIRRLVIA 376

Query:    71 VACIALTILFLIPVVIVQGLTHLDQLETWFPFLKGVLNLTFISQVITGYLPSLILQLFLS 130
             VA   LT  F+IP+  VQ L +++ +E   PFLK ++ +  +   I G+LP + L++FL 
Sbjct:   377 VAFFFLTFFFMIPIAFVQTLANIEGIEKAVPFLKPLIEVKTVKSFIQGFLPGIALKIFLI 436

Query:   131 FVPPIMIMFSSIQGHISLSNIEKSACSKVWWFTVWNIFFANALSGTALYHVQVFLEPK-- 188
              +P I+++ S  +G IS S++E+   S+ + F   N+F  + ++GTAL  +  FL     
Sbjct:   437 VLPSILMLMSKFEGFISKSSLERRCASRYYMFQFINVFLCSIIAGTALQQLDSFLNQSAT 496

Query:   189 KIPQVLAEGVPAQASFFIAYVVTSGWTSISSELFRMFPLICSFISRLCCHNASDDLEV-- 246
             +IP+ +   +P +A+FFI Y++  GW  ++ E+ R+ PLI   +          D E   
Sbjct:   497 EIPKTIGVSIPMKATFFITYIMVDGWAGVAGEILRLKPLIIYHLKNFFLVKTEKDREEAM 556

Query:   247 -P-SIPYHSEIPRVIFSVLLGITYXXXXXXXXXXXXVYYCLGYIIYRNQLLNVYAPKFET 304
              P +I +++  P++    +LG+ Y            V++ L Y++YR+Q++NVY  ++E+
Sbjct:   557 DPGTIGFNTGEPQIQLYFILGLVYAAVSPILLPFILVFFALAYVVYRHQIINVYNQEYES 616

Query:   305 GGKFWPIVHNSTIFSLLLMHVIAIGIFGLKKLPLASSLVIPLPVLTLLFNEYCRKRFLPI 364
                FWP VH   + +L++  ++ +G+   KK   ++ L+  LPVLT+ F+++C+ R+ PI
Sbjct:   617 AAAFWPDVHRRVVIALIVSQLLLMGLLSTKKAARSTPLLFILPVLTIGFHKFCQGRYQPI 676

Query:   365 FEAYPTECLVKKDREDQNDATMAEFYEKLVTAYQDP 400
             F  YP +  + KD  ++           L  AY  P
Sbjct:   677 FVTYPLQDAMVKDTLERMREPNLNLKTFLQNAYAHP 712

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA

TAIR|locus:2130130 AT4G15430 "AT4G15430" [Arabidopsis thaliana (taxid:3702)]

 Score = 652 (234.6 bits), Expect = 6.0e-64, P = 6.0e-64
 Identities = 131/400 (32%), Positives = 226/400 (56%)

Query:    11 VAAAFVSFNSRYGAAIALHIQQGVNPTEWVTEQAPAPQDVHWPFFSSSFMKRWICKLAVV 70
             V AAFVSF SR+GAA+    QQ  NPTEW+TE A  P+D+++   +  ++   I +L V 
Sbjct:   319 VPAAFVSFKSRWGAAVCAQTQQTRNPTEWLTEWAAEPRDIYYDNLALPYVDLKIRRLIVG 378

Query:    71 VACIALTILFLIPVVIVQGLTHLDQLETWFPFLKGVLNLTFISQVITGYLPSLILQLFLS 130
             VA   LT  F+IP+  VQ L +++ +E  FPFLK ++ +  +  +I G+LP + L++FL 
Sbjct:   379 VAYFFLTFFFMIPIAFVQSLANIEGIEKAFPFLKPLIEVKLLKSIIQGFLPGIALKIFLL 438

Query:   131 FVPPIMIMFSSIQGHISLSNIEKSACSKVWWFTVWNIFFANALSGTALYHVQVFLEPKK- 189
             F+P I++  S  +G +S S++E+ A ++ + F   N+F  + ++GTA   +  FL     
Sbjct:   439 FLPRILMQMSKFEGFVSTSSLERRAATRFYMFQFINVFLGSIVTGTAFQQLNSFLNQSAN 498

Query:   190 -IPQVLAEGVPAQASFFIAYVVTSGWTSISSELFRMFPLICSFISRLCCHNASDDLEVPS 248
              IP+ +   +P +A+FFI Y++  GW  ++ E+ R+ PLI   +          D E  +
Sbjct:   499 DIPKTIGVSIPMKATFFITYIMVDGWAGVAGEILRLKPLIIYHLKNSFLVRTEKDREEAT 558

Query:   249 IP----YHSEIPRVIFSVLLGITYXXXXXXXXXXXXVYYCLGYIIYRNQLLNVYAPKFET 304
              P    +++  P++    LLG+ Y            V++ L +++YR+Q++NVY  K+E+
Sbjct:   559 DPGTIGFNTGEPQIQLYFLLGLVYAAVSPILLPFILVFFGLAFVVYRHQVINVYNQKYES 618

Query:   305 GGKFWPIVHNSTIFSLLLMHVIAIGIFGLKKLPLASSLVIPLPVLTLLFNEYCRKRFLPI 364
              GKFWP VH   + +L++  ++ +G+   K    ++ L++ LP+LT+ F+++C+ R+ P 
Sbjct:   619 AGKFWPDVHRRVVTALVVSQLLLMGLLSTKHASKSTPLLLVLPLLTIGFHKHCKNRYQPA 678

Query:   365 FEAYPT--ECLVKK--DREDQNDATMAEFYEKLVTAYQDP 400
             F  YP   E ++K   DR  + +  +  F   L  AY  P
Sbjct:   679 FVTYPLQQEAMIKDTLDRIREPNLNLKAF---LRDAYAHP 715

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0007623 "circadian rhythm" evidence=RCA

GO:0009651 "response to salt stress" evidence=RCA

GO:0009723 "response to ethylene stimulus" evidence=RCA

GO:0009733 "response to auxin stimulus" evidence=RCA

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

GO:0009739 "response to gibberellin stimulus" evidence=RCA

GO:0009751 "response to salicylic acid stimulus" evidence=RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=RCA

GO:0048574 "long-day photoperiodism, flowering" evidence=RCA

TAIR|locus:2008860 AT1G11960 "AT1G11960" [Arabidopsis thaliana (taxid:3702)]

 Score = 651 (234.2 bits), Expect = 7.6e-64, P = 7.6e-64
 Identities = 129/407 (31%), Positives = 225/407 (55%)

Query:    13 AAFVSFNSRYGAAIALHIQQGVNPTEWVTEQAPAPQDVHWPFFSSSFMKRWICKLAVVVA 72
             AAFVSF +R+GAA++   QQ  +PTEW+TE AP  ++V W   +  ++   + +L + +A
Sbjct:   321 AAFVSFKTRWGAAVSAQTQQSSDPTEWLTEWAPEAREVFWSNLAIPYVSLTVRRLIMHIA 380

Query:    73 CIALTILFLIPVVIVQGLTHLDQLETWFPFLKGVLNLTFISQVITGYLPSLILQLFLSFV 132
                LT  F+IP+  VQ L  ++ +E   PFLK ++       VI G+LP ++L+LFL F+
Sbjct:   381 FFFLTFFFMIPIAFVQSLASIEGIEKNAPFLKSIIENDLFKSVIQGFLPGIVLKLFLIFL 440

Query:   133 PPIMIMFSSIQGHISLSNIEKSACSKVWWFTVWNIFFANALSGTALYHVQVFLEP--KKI 190
             P I+++ S  +G +SLS++E+ A  + + F + N+F  + ++G+A   +  FL+   K+I
Sbjct:   441 PSILMVMSKFEGFVSLSSLERRAAFRYYIFNLINVFLGSVITGSAFEQLDSFLKQSAKEI 500

Query:   191 PQVLAEGVPAQASFFIAYVVTSGWTSISSELFRMFPLICSFISRLCCHNASDDLEVPSIP 250
             P+ +   +P +A+FFI Y++  GW  I+ E+ R+ PLI   I          D E    P
Sbjct:   501 PKTVGVAIPIKATFFITYIMVDGWAGIAGEILRLKPLIFFHIKNSLLVKTEKDREEAMNP 560

Query:   251 ----YHSEIPRVIFSVLLGITYXXXXXXXXXXXXVYYCLGYIIYRNQLLNVYAPKFETGG 306
                 YH+  PR+    LLG+ Y            +++ L Y+++R+Q++NVY  ++E+  
Sbjct:   561 GQINYHATEPRIQLYFLLGLVYAPVTPVLLPFIIIFFALAYLVFRHQIINVYNQEYESAA 620

Query:   307 KFWPIVHNSTIFSLLLMHVIAIGIFGLKKLPLASSLVIPLPVLTLLFNEYCRKRFLPIFE 366
             +FWP VH   I +L++  ++ +G+   K    ++  ++ LP++T  F+ YC+ R+ P F 
Sbjct:   621 RFWPDVHGRIISALIIAQILLMGLLSTKGAAQSTPFLLFLPIITFFFHRYCKGRYEPAFL 680

Query:   367 AYPT-ECLVKK--DREDQNDATMAEFYEKLVTAYQDPALMPVQYSGS 410
              +P  E +VK   +R  + +  +  + +K   AY  P      Y  S
Sbjct:   681 RHPLKEAMVKDTLERAREPNFNLKPYLQK---AYIHPVFKDNDYEDS 724

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00021015001 SubName- Full=Chromosome chr14 scaffold_21, whole genome shotgun sequence; (715 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	424
pfam02714	325	pfam02714, DUF221, Domain of unknown function DUF2	1e-100
COG5594	827	COG5594, COG5594, Uncharacterized integral membran	6e-47

>gnl|CDD|190398 pfam02714, DUF221, Domain of unknown function DUF221

 Score =  300 bits (772), Expect = e-100
 Identities = 122/325 (37%), Positives = 181/325 (55%), Gaps = 7/325 (2%)

Query: 14  AFVSFNSRYGAAIALHIQQGVNPTEWVTEQAPAPQDVHWPFFSSSFMKRWICKLAVVVAC 73
           AFV+F S+  A +A    Q  NP +W T  AP P+D+ W   S S  +RW+ +L V +  
Sbjct: 1   AFVTFKSQAAAQMAAQALQHHNPLKWPTYLAPEPRDIIWENLSLSRWERWLRRLIVNLLL 60

Query: 74  IALTILFLIPVVIVQGLTHLDQLETWFPFLKGVLNL-TFISQVITGYLPSLILQLFLSFV 132
             L I + IPV  V  L++L+ L   +PFLK +L+L   +  ++TG LP+L+L L ++ +
Sbjct: 61  FLLIIFWAIPVAFVGLLSNLETLTKVWPFLKWILDLPPVLLGLVTGLLPTLLLSLLMALL 120

Query: 133 PPIMIMFSSIQGHISLSNIEKSACSKVWWFTVWNIFFANALSGTALYHVQVFL-EPKKIP 191
           P I+   S +QGH S S++E S  SK + F V N+F    L+ TA   +   +  P  IP
Sbjct: 121 PIILRFLSKLQGHPSRSDVELSVQSKYFAFLVVNVFLVVTLASTASSLITEIIDNPTSIP 180

Query: 192 QVLAEGVPAQASFFIAYVVTSGWTSISSELFRMFPLICSFISRLC-CHNASDDLE----V 246
            +LA  +P  ++FFI+Y++  G +  + EL ++ PLI  +I R        D  E     
Sbjct: 181 TLLATNLPKASNFFISYILLQGLSGAAGELLQLGPLILYYIRRKFLDKTPRDKWERYTTP 240

Query: 247 PSIPYHSEIPRVIFSVLLGITYFFLAPLILPFLLVYYCLGYIIYRNQLLNVYAPKFETGG 306
           PS  Y +  P  +    +G+ Y  +APLILPF LVY+ LGY +Y+ QLL VY  K+E+GG
Sbjct: 241 PSFDYGTVYPVFLLIFTIGLIYSVIAPLILPFGLVYFGLGYFVYKYQLLYVYVTKYESGG 300

Query: 307 KFWPIVHNSTIFSLLLMHVIAIGIF 331
            FWP   N  +  L L  +  IG+F
Sbjct: 301 LFWPRALNRLLVGLYLFQLCLIGLF 325

This family consists of hypothetical transmembrane proteins none of which have any function, the aligned region is at 538 residues at maximum length. Length = 325

>gnl|CDD|227881 COG5594, COG5594, Uncharacterized integral membrane protein [Function unknown]

 Score =  172 bits (437), Expect = 6e-47
 Identities = 111/367 (30%), Positives = 177/367 (48%), Gaps = 16/367 (4%)

Query: 13  AAFVSFNSRYGAAIALHIQQGVNPTEWV-TEQAPAPQDVHWPFFSSS----FMKRWICKL 67
           + F++F S+  A IA   Q        +  E APAP D+ W     S      KR     
Sbjct: 359 SGFITFKSQASAQIAAQSQIYSRVLGKLKVEIAPAPNDIIWDNLRLSRKERLFKRIS--- 415

Query: 68  AVVVACIALTILFLIPVVIVQGLTHLDQLETWFPFLKGVLNL-TFISQVITGYLPSLILQ 126
              +  I L IL+  PV  V  +++L+ L + +PFLK +L    F++ ++TG LP++ L 
Sbjct: 416 -ANILFILLIILWAFPVAFVGTISNLNTLSSLWPFLKFILKDPPFLAGILTGLLPTVALS 474

Query: 127 LFLSFVPPIMIMFSSIQGHISLSNIEKSACSKVWWFTVWNIFFANALSGTALYHV-QVFL 185
           L +S VP  +   S +QG +S S  E    +K + F   N+F    L+ +    V  +  
Sbjct: 475 LLMSIVPYFIRWLSYMQGLVSYSEEEIYVQNKYFAFLFVNLFLVVTLASSFSSIVWSLLK 534

Query: 186 EPKKIPQVLAEGVPAQASFFIAYVVTSGWTSISSELFRMFPLICSFI----SRLCCHNAS 241
           EP  I  +LA  +P  ++FFI+Y++  G +     L ++ PL+ S +             
Sbjct: 535 EPTSIMTLLANNLPKASNFFISYIILQGLSGFPGTLLQIVPLLLSLVLGKFKDSTPRQKW 594

Query: 242 DDLEVPSIP-YHSEIPRVIFSVLLGITYFFLAPLILPFLLVYYCLGYIIYRNQLLNVYAP 300
           + LE P    + + +P+ I    + I Y  ++PLIL F  VY+ L Y+ Y+  L+ V   
Sbjct: 595 NRLETPPSFQFGTVLPQPILLFTITICYSIISPLILLFGAVYFILNYLAYKYNLIYVSNH 654

Query: 301 KFETGGKFWPIVHNSTIFSLLLMHVIAIGIFGLKKLPLASSLVIPLPVLTLLFNEYCRKR 360
             E+GG +WP      I  L L  V  +G+F L K    S L+ PL V T++F+ Y +K 
Sbjct: 655 SPESGGGYWPRALFQIIVGLYLFQVCLLGLFSLAKGWGLSVLLFPLIVFTVIFHYYFKKM 714

Query: 361 FLPIFEA 367
           F P+ + 
Sbjct: 715 FDPLSKY 721

Length = 827

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	424
KOG1134	728	consensus Uncharacterized conserved protein [Gener	100.0
COG5594	827	Uncharacterized integral membrane protein [Functio	100.0
PF02714	325	DUF221: Domain of unknown function DUF221; InterPr	100.0
PF04547	452	Anoctamin: Calcium-activated chloride channel; Int	99.19
KOG2513	647	consensus Protein required for meiotic chromosome	98.26
KOG2514	861	consensus Uncharacterized conserved protein [Funct	91.01
PF07810	111	TMC: TMC domain; InterPro: IPR012496 These sequenc	90.76
PF13893	56	RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or	86.17
smart00361	70	RRM_1 RNA recognition motif.	84.39
PF00076	70	RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or	82.77
KOG0149	247	consensus Predicted RNA-binding protein SEB4 (RRM	82.42

>KOG1134 consensus Uncharacterized conserved protein [General function prediction only]

Probab=100.00  E-value=8.1e-80  Score=655.23  Aligned_cols=405  Identities=44%  Similarity=0.810  Sum_probs=382.7

Q ss_pred             ccc-ccccCCCceEEEEeCCHHHHHHHHHhccCCCCCcceeccCCCCCCeecCCCCCchHHHHHHHHHHHHHHHHHHHHH
Q 014468            2 EQS-SLAGKEVAAAFVSFNSRYGAAIALHIQQGVNPTEWVTEQAPAPQDVHWPFFSSSFMKRWICKLAVVVACIALTILF   80 (424)
Q Consensus         2 ~~~-~~~~~~~~~aFVtF~s~~~A~~a~q~~~~~~~~~~~v~~AP~P~DIiW~NL~~~~~~r~~R~~~~~~~~~~l~if~   80 (424)
                      ||+ ..++++.+.|||||+|+.+|+.|+|..++.++++|.++.||||+||.|+|+..+..+|+.|++.++++.+++++||
T Consensus       295 ~~~~~~~~~~~~~aFVtf~sr~~A~~~aq~~~~~~~~~w~~~~APeP~Di~W~nl~i~~~~~~~~~~~~~~~~~~li~f~  374 (728)
T KOG1134|consen  295 LRESLYEEKPLPAAFVTFKSRYGAAVAAQTQQSLNPTKWLTEFAPEPRDIYWDNLAISYVERYLRRFLVNVALFLLLFFW  374 (728)
T ss_pred             HHHHHHhcCCCceEEEEEEeeHHHHHHHHhhhcCCCCceEEEecCCcccceecccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344 4555899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhcchhhhhhhhchhhhhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhhcCcchhHHHHHHHHHHH
Q 014468           81 LIPVVIVQGLTHLDQLETWFPFLKGVLNLTFISQVITGYLPSLILQLFLSFVPPIMIMFSSIQGHISLSNIEKSACSKVW  160 (424)
Q Consensus        81 ~iPv~~v~~l~~l~~L~~~~p~l~~~~~~~~~~~li~g~lp~l~l~~~~~llP~i~~~ls~~eg~~s~S~~~~s~~~k~f  160 (424)
                      ++|+++|++++|+++|++++||++.+.+.++++++++|+||++++.++++++|.++++++++|||.|+|+.|++.+.|+|
T Consensus       375 ~iPva~V~~l~nl~~l~~~~Pflk~i~~~~~i~~vI~gfLP~l~l~~~~~~lP~~l~~ls~~eG~~s~S~~e~~a~~k~~  454 (728)
T KOG1134|consen  375 IIPVAFVQALTNLEGLSKVFPFLKPILEMKFISSVITGFLPTLALVIFLALLPPFLRYLSKLEGLISRSEEERSALNKYY  454 (728)
T ss_pred             HHHHHHHHHHHhhhhhhhccchhhhhhhcchHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhcCccchhHHHHHHHHhHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhchhhHHHHHHh-hcCCCcHHHHHHhccCchhHHHHHHHHHHHhhhhhHHHHhhHHHHHHHHHhhccCC
Q 014468          161 WFTVWNIFFANALSGTALYHVQV-FLEPKKIPQVLAEGVPAQASFFIAYVVTSGWTSISSELFRMFPLICSFISRLCCHN  239 (424)
Q Consensus       161 ~f~~~N~~lv~~l~~s~~~~l~~-~~~p~~i~~~l~~~lp~~s~ffi~yii~~~~~~~~~~Ll~~~~li~~~i~~~~~~~  239 (424)
                      +|+++|+|++.+++|+.++++.. .++|.++...++.++|++++||++|++++|+.|.+.|++|+.+++++.+++.+.++
T Consensus       455 ~F~~~nvFl~~~l~~sa~~~~~~~l~~p~~i~~~la~~lP~~a~Ff~~yii~~g~~g~~~ellrl~~Li~~~i~~~~~~~  534 (728)
T KOG1134|consen  455 IFLLVNVFLVVTLSGSALRQLLSILSTPRLIPKLLAAALPKQASFFITYIITSGWAGFAGELLRLVPLIIYLLKKLFLKS  534 (728)
T ss_pred             HHHHhhhHHHhhhhHHHHHHHHHHhcCHhHHHHHHhhhChhhHHHHHHHHHHhccchhhHHHhcchhHHHHHHHHHHccc
Confidence            99999999999999999999988 66699999999999999999999999999999999999999999999999887655


Q ss_pred             CCcc----CCC-CCCCcccchhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCccHHHHHH
Q 014468          240 ASDD----LEV-PSIPYHSEIPRVIFSVLLGITYFFLAPLILPFLLVYYCLGYIIYRNQLLNVYAPKFETGGKFWPIVHN  314 (424)
Q Consensus       240 ~~~~----~~~-~~f~~~~~y~~~l~v~~i~l~ys~i~Plilp~~~lyF~~~y~v~Ky~llyvy~~~~esgG~~w~~~~~  314 (424)
                      ++|+    .++ +.+++|..||..+++++|+++||+++|+|+|||++||+++|+|||||++|||.++|||||++||.+++
T Consensus       535 t~~~~~e~~~p~~~~~~g~~yP~~~~~f~i~i~YsviaPlILpF~lvyF~l~y~vyr~ql~yvy~~~yes~g~~wp~ih~  614 (728)
T KOG1134|consen  535 TPRDREERYEPLSSFYFGTIYPRILLIFTIGICYSVIAPLILPFGLVYFCLAYLVYRYQLIYVYNQKYESGGRFWPDIHR  614 (728)
T ss_pred             chhhhhhhcCCccccchhhhccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhhheeecccccccccchHHHHH
Confidence            4432    344 77889999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHhccccccccccchhhhhhchhhhhhhh-HHHhhHhh
Q 014468          315 STIFSLLLMHVIAIGIFGLKKLPLASSLVIPLPVLTLLFNEYCRKRFLPIFEAYPTECLVKKDREDQNDAT-MAEFYEKL  393 (424)
Q Consensus       315 ~~~~~l~l~q~~~~g~~~lk~~~~~~~~~~~l~~~t~~f~~~~~~~f~~~~~~~pl~~~~~~d~~~~~~~~-~~~~~~~~  393 (424)
                      ++++|++++|++|+|+|++|+++..+.+++|++++|+.||.+|+.+|.|.+.++|++++...|++|++.+. .+...+..
T Consensus       615 ~ii~~l~l~ql~l~gl~~~k~~~~~s~~~~~l~~lTi~~~~~c~~rf~p~f~~~~~~~~~~~d~~~~~~~~~~~~~~~~~  694 (728)
T KOG1134|consen  615 RIIFGLILFQLILFGLFSLKKGAVASVLLFPLIVLTILFHIYCKGRFLPLFIAYPIEEAEVDDTLDEEREPNMENLYNYL  694 (728)
T ss_pred             HHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHhhhccccccccchhhhhhccCCccccCCChhhccccc
Confidence            99999999999999999999999999999999999999999999999999999999999988888875443 44566788


Q ss_pred             hhccCCCCCCCCc
Q 014468          394 VTAYQDPALMPVQ  406 (424)
Q Consensus       394 ~~~Y~~Pal~~~~  406 (424)
                      .++|.||++++..
T Consensus       695 ~~~~~~p~~~~~~  707 (728)
T KOG1134|consen  695 KSAYVLPVFLSGS  707 (728)
T ss_pred             cccccCccccccc
Confidence            9999999999876

>COG5594 Uncharacterized integral membrane protein [Function unknown]

Probab=100.00  E-value=3.5e-74  Score=594.80  Aligned_cols=362  Identities=30%  Similarity=0.508  Sum_probs=341.7

Q ss_pred             cccCCCceEEEEeCCHHHHHHHHHhccCCCCCcce-eccCCCCCCeecCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014468            6 LAGKEVAAAFVSFNSRYGAAIALHIQQGVNPTEWV-TEQAPAPQDVHWPFFSSSFMKRWICKLAVVVACIALTILFLIPV   84 (424)
Q Consensus         6 ~~~~~~~~aFVtF~s~~~A~~a~q~~~~~~~~~~~-v~~AP~P~DIiW~NL~~~~~~r~~R~~~~~~~~~~l~if~~iPv   84 (424)
                      ...+++++|||||+|+..||+|+|...++++.... ++.||+|+||+|+|+..++++|..|++.+++++++++++|++||
T Consensus       352 ~~~t~~~~~FItFkSq~~Aq~~aQ~~~~sr~~~~~~v~iapaPnDi~W~Nl~ls~~~r~~k~~~~ni~~il~II~w~~pV  431 (827)
T COG5594         352 YENTPTKSGFITFKSQASAQIAAQSQIYSRVLGKLKVEIAPAPNDIIWDNLRLSRKERLFKRISANILFILLIILWAFPV  431 (827)
T ss_pred             cccCccccEEEEEehhHHHHHHHHhhhhhhhhcceeeeecCCccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455779999999999999999999999997766 99999999999999999999999999999999999999999999


Q ss_pred             HHHHhhcchhhhhhhhchhhhhhh-hhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhhcCcchhHHHHHHHHHHHHHH
Q 014468           85 VIVQGLTHLDQLETWFPFLKGVLN-LTFISQVITGYLPSLILQLFLSFVPPIMIMFSSIQGHISLSNIEKSACSKVWWFT  163 (424)
Q Consensus        85 ~~v~~l~~l~~L~~~~p~l~~~~~-~~~~~~li~g~lp~l~l~~~~~llP~i~~~ls~~eg~~s~S~~~~s~~~k~f~f~  163 (424)
                      |+++.++|++++++.|||++.+.+ .|+++++++|+||++++.++++++|+++++|+++||..|+|+.|+.++.|||.|+
T Consensus       432 a~v~~i~Nl~~l~~~~p~l~~il~~~~~l~~iltglLptv~~~~l~~ivP~fir~Ls~~qG~~S~se~E~~~~~k~~~f~  511 (827)
T COG5594         432 AFVGTISNLNTLSSLWPFLKFILKDPPFLAGILTGLLPTVALSLLMSIVPYFIRWLSYMQGLVSYSEEEIYVQNKYFAFL  511 (827)
T ss_pred             HHHHHHhcchhHhhhhHHHHHHHhccHHHHHHHHhhhhHHHHHHHHHHhHHHHHHHHHhcCccchHHHHHHHHhhhhhhe
Confidence            999999999999999999999876 5699999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhchhhHHHHHHh-hcCCCcHHHHHHhccCchhHHHHHHHHHHHhhhhhHHHHhhHHHHHHHHHhhccCC-CC
Q 014468          164 VWNIFFANALSGTALYHVQV-FLEPKKIPQVLAEGVPAQASFFIAYVVTSGWTSISSELFRMFPLICSFISRLCCHN-AS  241 (424)
Q Consensus       164 ~~N~~lv~~l~~s~~~~l~~-~~~p~~i~~~l~~~lp~~s~ffi~yii~~~~~~~~~~Ll~~~~li~~~i~~~~~~~-~~  241 (424)
                      ++|.|++.+++++..+.+.+ .++|.++..++++++|++|+||++|+++||+.+++.+|+|+++|+.+++..++.+. +|
T Consensus       512 fv~~FlV~Tl~s~fss~v~~~~ke~~s~~~llA~~lpk~SnFfi~~iilqgl~~~~~~LLqi~~Ll~~~vl~kf~~~TpR  591 (827)
T COG5594         512 FVNLFLVVTLASSFSSIVWSLLKEPTSIMTLLANNLPKASNFFISYIILQGLSGFPGTLLQIVPLLLSLVLGKFKDSTPR  591 (827)
T ss_pred             eeeehheeeehhHHHHHHHHHhcChHhHHHHHHhccHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHhhhhhcCCChH
Confidence            99999999999988777766 78999999999999999999999999999999999999999999998887765544 44


Q ss_pred             cc----CCCCCCCcccchhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCccHHHHHHHHH
Q 014468          242 DD----LEVPSIPYHSEIPRVIFSVLLGITYFFLAPLILPFLLVYYCLGYIIYRNQLLNVYAPKFETGGKFWPIVHNSTI  317 (424)
Q Consensus       242 ~~----~~~~~f~~~~~y~~~l~v~~i~l~ys~i~Plilp~~~lyF~~~y~v~Ky~llyvy~~~~esgG~~w~~~~~~~~  317 (424)
                      ++    ..++.|+||..||..+++++|+++||+++|+|+.||++||++.|++|||+++|+++.++||||+.||++++|++
T Consensus       592 ~k~nr~~~~~~f~~G~v~P~~~~l~~I~icYSiisPlILlf~~v~F~~~ylaykY~l~Yv~~~~~es~G~~w~~al~qii  671 (827)
T COG5594         592 QKWNRLETPPSFQFGTVLPQPILLFTITICYSIISPLILLFGAVYFILNYLAYKYNLIYVSNHSPESGGGYWPRALFQII  671 (827)
T ss_pred             HHHhhccCCCccccccccchhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccCCCccHHHHHHHH
Confidence            32    46899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHhcccccccc
Q 014468          318 FSLLLMHVIAIGIFGLKKLPLASSLVIPLPVLTLLFNEYCRKRFLPIFEA  367 (424)
Q Consensus       318 ~~l~l~q~~~~g~~~lk~~~~~~~~~~~l~~~t~~f~~~~~~~f~~~~~~  367 (424)
                      +|++++|+||+|+|++.++|+.+++++|++.+|++||.+|++.|+|+.++
T Consensus       672 vGl~l~qv~l~glf~~~k~~~ls~~~~p~~~~Tvi~~~~~~~~f~pl~~~  721 (827)
T COG5594         672 VGLYLFQVCLLGLFSLAKGWGLSVLLFPLIVFTVIFHYYFKKMFDPLSKY  721 (827)
T ss_pred             HHHHHHHHHHHHHHHhcCcceeEeehHHHHHHHHHHHHHHHHhhcccccc
Confidence            99999999999999999999999999999999999999999999976543

>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length

Probab=100.00  E-value=2e-70  Score=543.28  Aligned_cols=318  Identities=35%  Similarity=0.675  Sum_probs=304.7

Q ss_pred             EEEEeCCHHHHHHHHHhccCCCCCcceeccCCCCCCeecCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcch
Q 014468           14 AFVSFNSRYGAAIALHIQQGVNPTEWVTEQAPAPQDVHWPFFSSSFMKRWICKLAVVVACIALTILFLIPVVIVQGLTHL   93 (424)
Q Consensus        14 aFVtF~s~~~A~~a~q~~~~~~~~~~~v~~AP~P~DIiW~NL~~~~~~r~~R~~~~~~~~~~l~if~~iPv~~v~~l~~l   93 (424)
                      |||||+++++|+.|+|..++++|++|++++||||+||+|+|++.+..+|..|++++++++++++++|++|++++++++|+
T Consensus         1 aFVtF~~~~~a~~~~q~~~~~~~~~~~v~~APeP~DI~W~NL~~~~~~r~~R~~~~~~~~~~l~i~~~ipv~~v~~l~~l   80 (325)
T PF02714_consen    1 AFVTFNSQKSAQIALQLLLSKRPNSWRVSPAPEPDDIIWENLSISSKQRFLRRIIVNILLFLLIIFWTIPVAFVSALSNL   80 (325)
T ss_pred             CEEEECCHHHHHHHHHHHhcCCCCCceEeeCCCcccccccccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhhchhhhhhh-hhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhhcCcchhHHHHHHHHHHHHHHHHHHHHHhh
Q 014468           94 DQLETWFPFLKGVLN-LTFISQVITGYLPSLILQLFLSFVPPIMIMFSSIQGHISLSNIEKSACSKVWWFTVWNIFFANA  172 (424)
Q Consensus        94 ~~L~~~~p~l~~~~~-~~~~~~li~g~lp~l~l~~~~~llP~i~~~ls~~eg~~s~S~~~~s~~~k~f~f~~~N~~lv~~  172 (424)
                      +++++.+|++++..+ ++...++++|++|++++.++|.++|.+++.++++|||.|+|+.|+++++|+|+|+++|++++++
T Consensus        81 ~~l~~~~~~l~~~~~~~~~~~~~i~~~lp~l~l~~~~~llp~ii~~ls~~e~~~s~S~~~~sv~~k~f~f~~~n~~lv~~  160 (325)
T PF02714_consen   81 DTLKKVIPFLQWIISFSPWLLSLIQGILPSLLLSIFNALLPIIIRFLSKFEGHKSRSEVERSVLRKLFFFLFFNVFLVPS  160 (325)
T ss_pred             cchhccchhhHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999865 5678899999999999999999999999999999999999999999999999999999999999


Q ss_pred             chhhHHHHHHh-hcCCCcHHHHHHhccCchhHHHHHHHHHHHhhhhhHHHHhhHHHHHHHHHhhccCCCCcc----C-CC
Q 014468          173 LSGTALYHVQV-FLEPKKIPQVLAEGVPAQASFFIAYVVTSGWTSISSELFRMFPLICSFISRLCCHNASDD----L-EV  246 (424)
Q Consensus       173 l~~s~~~~l~~-~~~p~~i~~~l~~~lp~~s~ffi~yii~~~~~~~~~~Ll~~~~li~~~i~~~~~~~~~~~----~-~~  246 (424)
                      +++++++.+++ .++|+++.+.+|.++|++++||++|++++++.+.+++|+|+++++++.++++..++++|+    . ++
T Consensus       161 l~~~~~~~~~~~~~~~~~i~~~l~~~lp~~s~ffi~~ii~~~~~~~~~~Ll~~~~l~~~~~~~~~~~~t~r~~~~~~~~~  240 (325)
T PF02714_consen  161 LAGTILSALKNIINNPGSILQLLGNFLPNSSNFFINYIILQAFIGSPLELLRPPPLIIYYIRRKFFSKTPRELNELYTEP  240 (325)
T ss_pred             hhHHHHHHHHHHHhCcchHHHHHHHHhhhhhHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhcCCC
Confidence            99999999888 788999999999999999999999999999999999999999999999988765444432    3 88


Q ss_pred             CCCCcccchhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCccHHHHHHHHHHHHHHHHHH
Q 014468          247 PSIPYHSEIPRVIFSVLLGITYFFLAPLILPFLLVYYCLGYIIYRNQLLNVYAPKFETGGKFWPIVHNSTIFSLLLMHVI  326 (424)
Q Consensus       247 ~~f~~~~~y~~~l~v~~i~l~ys~i~Plilp~~~lyF~~~y~v~Ky~llyvy~~~~esgG~~w~~~~~~~~~~l~l~q~~  326 (424)
                      ++|+||..||..+++++|+++||+++|+++|+|++||++.|++||||++|||++++||||++|+.+++++++|++++|++
T Consensus       241 ~~f~~~~~ya~~l~v~~i~l~ys~i~Plil~~~~~yf~l~y~v~ky~llyvy~~~~es~G~~~~~~~~~~~~~l~i~q~~  320 (325)
T PF02714_consen  241 PPFDYGYQYAQMLLVFFIGLFYSPIAPLILPFGLVYFLLKYFVDKYNLLYVYRPKYESGGRLWPTAFNRLLFGLVIFQFT  320 (325)
T ss_pred             CCCcchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhheeeeccCCCCCCchHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHH
Q 014468          327 AIGIF  331 (424)
Q Consensus       327 ~~g~~  331 (424)
                      |+|+|
T Consensus       321 ~~g~f  325 (325)
T PF02714_consen  321 MIGLF  325 (325)
T ss_pred             HHHhC
Confidence            99985

; GO: 0016020 membrane

>PF04547 Anoctamin: Calcium-activated chloride channel; InterPro: IPR007632 This family contains the anoctamin/TMEM16 proteins which are thought to be calcium-dependent chloride channel []

Probab=99.19  E-value=4.7e-08  Score=101.48  Aligned_cols=264  Identities=16%  Similarity=0.162  Sum_probs=167.8

Q ss_pred             CCCee-cCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhhhchhhhhhh---hhhHHHHHHhhHHH
Q 014468           47 PQDVH-WPFFSSSFMKRWICKLAVVVACIALTILFLIPVVIVQGLTHLDQLETWFPFLKGVLN---LTFISQVITGYLPS  122 (424)
Q Consensus        47 P~DIi-W~NL~~~~~~r~~R~~~~~~~~~~l~if~~iPv~~v~~l~~l~~L~~~~p~l~~~~~---~~~~~~li~g~lp~  122 (424)
                      .++|. ..+...+.++|..|...+..++++++..   -++++.++..++.      ++....+   .....+++.+++-+
T Consensus       101 ~~~vtg~~~~~~p~~~r~~r~~~s~~ivl~~i~i---~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~vl~~  171 (452)
T PF04547_consen  101 IDPVTGEMEPYYPPWKRILRYLVSVPIVLLFILI---VIGIVIGVFYLRI------YLTEIYSGPGKQFLASLIPTVLNA  171 (452)
T ss_pred             ccccCCCCccCCcHHHHhhhhhhhHHHHHHHHHH---HHHHHHHHHHHHH------HHHHHhcccchhHHHHHHHHHHHH
Confidence            34442 4566778889999996666554443322   1222222222221      1111122   12334555555666


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhcCcchhHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHhh-cCCCcHHHHHHhccCch
Q 014468          123 LILQLFLSFVPPIMIMFSSIQGHISLSNIEKSACSKVWWFTVWNIFFANALSGTALYHVQVF-LEPKKIPQVLAEGVPAQ  201 (424)
Q Consensus       123 l~l~~~~~llP~i~~~ls~~eg~~s~S~~~~s~~~k~f~f~~~N~~lv~~l~~s~~~~l~~~-~~p~~i~~~l~~~lp~~  201 (424)
                      +++.++|.+...+...|+++|.|.|.|+.|.+...|.|.|+++|.+.-... -+.+....+- -+| ...+ +       
T Consensus       172 v~i~il~~iy~~~a~~Lt~~EnhrT~~~ye~sli~K~F~f~fvn~y~~Lfy-iaF~~~~~~~~~~~-~~~~-L-------  241 (452)
T PF04547_consen  172 VVILILNFIYRKLAKKLTDWENHRTESEYENSLIIKVFLFQFVNSYAPLFY-IAFFYGVRQEECQP-CLSR-L-------  241 (452)
T ss_pred             HHHHhhhhHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhcccccCC-CHHH-H-------
Confidence            666677778888889999999999999999999999999999999974333 3333332110 012 2211 1       


Q ss_pred             hHHHHHHHHHHHhhhhhHHHHhhHHHHHHHHHhh-cc----CCC----C-------------ccCCCCCCCcc---cchh
Q 014468          202 ASFFIAYVVTSGWTSISSELFRMFPLICSFISRL-CC----HNA----S-------------DDLEVPSIPYH---SEIP  256 (424)
Q Consensus       202 s~ffi~yii~~~~~~~~~~Ll~~~~li~~~i~~~-~~----~~~----~-------------~~~~~~~f~~~---~~y~  256 (424)
                      +.-+...++++-+.+...|..  .|.+.+..+++ ..    ++.    +             ++.+.++++-.   .+|.
T Consensus       242 ~~ql~~~~~~~qi~~~~~e~~--~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~l~~y~~~g~~~dY~  319 (452)
T PF04547_consen  242 RIQLFTIMVTKQIINNLLEVV--LPYLKKRYRRKKIRKKQRKKQQDERQENEEENQFLQQWEKEYELPPYDPDGLFDDYL  319 (452)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhhhhhcccccccccccccchHHHHHHHhcCCCCCcCCchHHHH
Confidence            333444555554555555543  45555554433 11    111    0             11234555533   7888


Q ss_pred             hHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhccCCCC---CCCCccHHHHHHHHHHHHHHHHHHHHHHH
Q 014468          257 RVIFSVLLGITYFFLAPLILPFLLVYYCLGYIIYRNQLLNVYAPKF---ETGGKFWPIVHNSTIFSLLLMHVIAIGIF  331 (424)
Q Consensus       257 ~~l~v~~i~l~ys~i~Plilp~~~lyF~~~y~v~Ky~llyvy~~~~---esgG~~w~~~~~~~~~~l~l~q~~~~g~~  331 (424)
                      .+..-+-....|+++.|+.-.++++.-++-.-.|++.+++.++|+.   +++=..|..+++-+...-++....++++.
T Consensus       320 emviQFGyv~lF~~afPlapl~allnN~~eir~D~~Kl~~~~rRP~p~~~~~IG~W~~il~~i~~lav~tN~~li~~~  397 (452)
T PF04547_consen  320 EMVIQFGYVTLFSAAFPLAPLFALLNNIVEIRLDAFKLLYLYRRPVPRRASSIGIWNNILEIISWLAVITNAALIAFT  397 (452)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhCCCCcccccchhhhHHHHHHHHHHHHHHHHHHHHhh
Confidence            8888899999999999999999999999999999999999997653   33335799999988888887777777666

>KOG2513 consensus Protein required for meiotic chromosome segregation [Cell cycle control, cell division, chromosome partitioning]

Probab=98.26  E-value=0.00033  Score=72.83  Aligned_cols=256  Identities=16%  Similarity=0.197  Sum_probs=142.2

Q ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhhhchhhhhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHH
Q 014468           57 SSFMKRWICKLAVVVACIALTILFLIPVVIVQGLTHLDQLETWFPFLKGVLNLTFISQVITGYLPSLILQLFLSFVPPIM  136 (424)
Q Consensus        57 ~~~~~r~~R~~~~~~~~~~l~if~~iPv~~v~~l~~l~~L~~~~p~l~~~~~~~~~~~li~g~lp~l~l~~~~~llP~i~  136 (424)
                      .+.|+|..|+.++.+-++++++....++.+...-  ++.      +.......| +.+++ .++|++++.++..++.-+-
T Consensus       261 yp~w~~~~~~~~vsvPv~l~c~~i~l~f~l~~f~--ie~------~~~s~~~~~-~~sil-s~lP~iv~~~li~~~t~~Y  330 (647)
T KOG2513|consen  261 YPEWKRILRRYLVSVPVILLCLCILLSFMLYCFQ--IEV------WVLSDYGGP-LISIL-SYLPTIVYAVLIPVLTRIY  330 (647)
T ss_pred             ccHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH--HHH------HHHHHcCCc-hHHHH-HHHHHHHHHHHHHHHHHHH
Confidence            4568889999888877776666555555554432  221      122222233 33333 5788888887776666555


Q ss_pred             H----HHHhhhcCcchhHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHhhcCCCcHHHHHHhccCchhHH------HH
Q 014468          137 I----MFSSIQGHISLSNIEKSACSKVWWFTVWNIFFANALSGTALYHVQVFLEPKKIPQVLAEGVPAQASF------FI  206 (424)
Q Consensus       137 ~----~ls~~eg~~s~S~~~~s~~~k~f~f~~~N~~lv~~l~~s~~~~l~~~~~p~~i~~~l~~~lp~~s~f------fi  206 (424)
                      +    +|.++|.|.++|..+++...|.+.|+++|.++--...+-+...+.      .+...+++-+-..-.+      .+
T Consensus       331 ~k~Ae~Lt~~EN~r~~s~y~~hli~K~~lf~f~nsy~sLFyi~f~l~d~~------~Lk~~l~~~li~sQ~l~~~~e~~~  404 (647)
T KOG2513|consen  331 KKLAEFLTKLENHRLESAYQKHLIAKVFLFNFVNSYLSLFYIAFLLRDME------LLKQQLATLLITSQSLLNLMEIAL  404 (647)
T ss_pred             HHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHH------HHHHHHHHHHHHHHHHHHHHhhcc
Confidence            5    456799999999999999999999999999974333322221111      1111222111100000      00


Q ss_pred             HHHHHHHhhhhhHHHHhhH--HHHHHHHH--hh-------ccCCCCcc-------------CCCCCCCcc---cchhhHH
Q 014468          207 AYVVTSGWTSISSELFRMF--PLICSFIS--RL-------CCHNASDD-------------LEVPSIPYH---SEIPRVI  259 (424)
Q Consensus       207 ~yii~~~~~~~~~~Ll~~~--~li~~~i~--~~-------~~~~~~~~-------------~~~~~f~~~---~~y~~~l  259 (424)
                      .|...+.--.=  +..|..  ...-...+  .+       +. ++.|+             .++.--.|.   ..|=.++
T Consensus       405 p~f~~~~~r~~--~~~~f~t~~~ae~~~s~~~~i~~~~~~~~-~~s~~~~a~~~~~~~qa~~E~~~~~ydgtf~Dylel~  481 (647)
T KOG2513|consen  405 PYFKIRTKRYE--NYIRFRTKSFAEELASAQAKIDGESPGFP-APSREPEAQLFPSLKQAELESGLAEYDGTFDDYLELL  481 (647)
T ss_pred             hHHHHhhhhhh--hhhhHHHHHHHHhhccchhhhcccccCCC-CcccccchhhcccchhhhhcchhhhhcchhHHHHHHH
Confidence            01111100000  000000  00000000  00       00 01111             011111132   2334567


Q ss_pred             HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhccCCCC----CCCCccHHHHHHHHHHHHHHHHHHHHHHHH
Q 014468          260 FSVLLGITYFFLAPLILPFLLVYYCLGYIIYRNQLLNVYAPKF----ETGGKFWPIVHNSTIFSLLLMHVIAIGIFG  332 (424)
Q Consensus       260 ~v~~i~l~ys~i~Plilp~~~lyF~~~y~v~Ky~llyvy~~~~----esgG~~w~~~~~~~~~~l~l~q~~~~g~~~  332 (424)
                      +-|-....||++.|+-..+|++--.+.+=+|-+.+..+.+|+.    ++-| .|..++.-+-+.-++-...++|+..
T Consensus       482 lQFGyvVlFS~~~PLA~~~aLvnNv~eirsda~Kl~~~~krPfp~r~~~IG-~Wq~~l~~lSvls~vtncaLi~~~~  557 (647)
T KOG2513|consen  482 LQFGYVVLFSCAFPLAAIFALVNNVIEIRSDALKLCLVLKRPFPRRVANIG-AWQNALELLSVLSCVTNCALIGMYP  557 (647)
T ss_pred             HHhhHHHHHHhHhhHHHHHHHHHHHhhhhHHHHHHHHhcCCCCcchhhhhH-HHHHHHHHHHHHHHHHhHHHHhccc
Confidence            7788888999999999999999999999999999999988764    6666 4888777766555555555555544

>KOG2514 consensus Uncharacterized conserved protein [Function unknown]

Probab=91.01  E-value=2.2  Score=46.64  Aligned_cols=56  Identities=11%  Similarity=0.201  Sum_probs=45.6

Q ss_pred             HHHHhhHHHHHHHHHHHHHHHHHHHHHhhhcCcchhHHHHHHHHHHHHHHHHHHHH
Q 014468          114 QVITGYLPSLILQLFLSFVPPIMIMFSSIQGHISLSNIEKSACSKVWWFTVWNIFF  169 (424)
Q Consensus       114 ~li~g~lp~l~l~~~~~llP~i~~~ls~~eg~~s~S~~~~s~~~k~f~f~~~N~~l  169 (424)
                      +..+..+-.+++.++|.+---+-.+++.+|.+.|.|+.|.++.-|.|.||++|...
T Consensus       433 t~~a~~in~~~i~~L~~iy~~~a~~lt~~e~prTe~~~ensl~~KiflfqfvN~ys  488 (861)
T KOG2514|consen  433 TATAVIINLVVIMILNAIYSNLASRLTNLENPRTESEFENSLILKIFLFQFVNYYS  488 (861)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhHHHHHhhhcCccchhhhcchhHHHHHHHHHHHhcC
Confidence            33344455566677777777788889999999999999999999999999999754

>PF07810 TMC: TMC domain; InterPro: IPR012496 These sequences are similar to a region conserved amongst various protein products of the transmembrane channel-like (TMC) gene family, such as Transmembrane channel-like protein 3 (Q7TN63 from SWISSPROT) and EVIN2 (Q8IU68 from SWISSPROT) - this region is termed the TMC domain []

Probab=90.76  E-value=1.9  Score=35.87  Aligned_cols=53  Identities=17%  Similarity=0.210  Sum_probs=40.0

Q ss_pred             CCCCCCc-----ccchhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhccCCCC
Q 014468          245 EVPSIPY-----HSEIPRVIFSVLLGITYFFLAPLILPFLLVYYCLGYIIYRNQLLNVYAPKF  302 (424)
Q Consensus       245 ~~~~f~~-----~~~y~~~l~v~~i~l~ys~i~Plilp~~~lyF~~~y~v~Ky~llyvy~~~~  302 (424)
                      ..++|+.     +-.|++.  +..+|+.|||..|++   +.+-+++.+++.|+.+++.++|+.
T Consensus        48 g~~eF~i~~nvL~liY~Qt--l~WiG~ffsPlLP~i---~~ik~~i~FYvKk~sll~~c~p~~  105 (111)
T PF07810_consen   48 GKPEFDIPKNVLDLIYNQT--LVWIGMFFSPLLPAI---NVIKLFILFYVKKFSLLYNCQPPQ  105 (111)
T ss_pred             CCCCccHhhhHHHHHHcch--hhhhhHHhchhHHHH---HHHHHHHHHHHHHHHHHHhcCCCC
Confidence            3455554     4455655  567899999988885   566788899999999999998863

Mutations in these genes are implicated in a number of human conditions, such as deafness and epidermodysplasia verruciformis []. TMC proteins are thought to have important cellular roles, and may be modifiers of ion channels or transporters []. ; GO: 0016021 integral to membrane

>PF13893 RRM_5: RNA recognition motif

Probab=86.17  E-value=1  Score=31.89  Aligned_cols=24  Identities=33%  Similarity=0.293  Sum_probs=21.6

Q ss_pred             CceEEEEeCCHHHHHHHHHhccCC
Q 014468           11 VAAAFVSFNSRYGAAIALHIQQGV   34 (424)
Q Consensus        11 ~~~aFVtF~s~~~A~~a~q~~~~~   34 (424)
                      .+.|||+|.+.++|..|.+.++..
T Consensus        21 ~~~a~V~f~~~~~A~~a~~~l~~~   44 (56)
T PF13893_consen   21 RGFAFVEFASVEDAQKAIEQLNGR   44 (56)
T ss_dssp             TTEEEEEESSHHHHHHHHHHHTTS
T ss_pred             CCEEEEEECCHHHHHHHHHHhCCC
Confidence            599999999999999999988654

(a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....

>smart00361 RRM_1 RNA recognition motif

Probab=84.39  E-value=1.4  Score=33.03  Aligned_cols=28  Identities=18%  Similarity=0.230  Sum_probs=23.8

Q ss_pred             cCCCceEEEEeCCHHHHHHHHHhccCCC
Q 014468            8 GKEVAAAFVSFNSRYGAAIALHIQQGVN   35 (424)
Q Consensus         8 ~~~~~~aFVtF~s~~~A~~a~q~~~~~~   35 (424)
                      .++.|.|||+|++..+|..|.+.+....
T Consensus        34 ~~~rG~~fV~f~~~~dA~~A~~~l~g~~   61 (70)
T smart00361       34 NHKRGNVYITFERSEDAARAIVDLNGRY   61 (70)
T ss_pred             CCCcEEEEEEECCHHHHHHHHHHhCCCE
Confidence            4567899999999999999999887653

>PF00076 RRM_1: RNA recognition motif

Probab=82.77  E-value=1.4  Score=32.21  Aligned_cols=28  Identities=39%  Similarity=0.442  Sum_probs=24.2

Q ss_pred             ccCCCceEEEEeCCHHHHHHHHHhccCC
Q 014468            7 AGKEVAAAFVSFNSRYGAAIALHIQQGV   34 (424)
Q Consensus         7 ~~~~~~~aFVtF~s~~~A~~a~q~~~~~   34 (424)
                      .++..+.|||+|++..+|..|.+.++..
T Consensus        35 ~~~~~~~a~V~F~~~~~a~~a~~~l~g~   62 (70)
T PF00076_consen   35 SGKSKGYAFVEFESEEDAEKALEELNGK   62 (70)
T ss_dssp             TSSEEEEEEEEESSHHHHHHHHHHHTTE
T ss_pred             cccccceEEEEEcCHHHHHHHHHHcCCC
Confidence            4567899999999999999999977654

(a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....

>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]

Probab=82.42  E-value=1  Score=42.00  Aligned_cols=26  Identities=23%  Similarity=0.252  Sum_probs=22.5

Q ss_pred             ccccCCCceEEEEeCCHHHHHHHHHh
Q 014468            5 SLAGKEVAAAFVSFNSRYGAAIALHI   30 (424)
Q Consensus         5 ~~~~~~~~~aFVtF~s~~~A~~a~q~   30 (424)
                      +..++..|++||||++.++|..||+.
T Consensus        48 ~~t~rskGyGfVTf~d~~aa~rAc~d   73 (247)
T KOG0149|consen   48 KNTGRSKGYGFVTFRDAEAATRACKD   73 (247)
T ss_pred             cCCccccceeeEEeecHHHHHHHhcC
Confidence            34567889999999999999999975

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	424
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-05

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.8 bits (105), Expect = 5e-05
 Identities = 68/515 (13%), Positives = 136/515 (26%), Gaps = 162/515 (31%)

Query: 8   GKEVAAAFV--SFNSRYG---AAIALHIQQGVNPTE-WVTEQAPAPQDVHWPFFSSSFMK 61
            +E+   FV       Y    + I    +Q    T  ++ ++     D         F K
Sbjct: 75  QEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQ------VFAK 128

Query: 62  RWICKLAVVVACI-ALTILFLIPVVIVQGL-----THL-------DQLETWFPFLKGVLN 108
             + +L   +    AL  L     V++ G+     T +        +++    F   +  
Sbjct: 129 YNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDF--KIFW 186

Query: 109 LTFISQVITGYLPSLILQLFLSFVPPIMIMFSSIQGHISLSNIEKSACSK---------- 158
           L   +      +  ++ +L     P                +  ++   +          
Sbjct: 187 LNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENC 246

Query: 159 ------VWWFTVWNIF--------------FANALSGTALYHVQVFLEPKKIPQVLAEGV 198
                 V     WN F                + LS     H+   L+   +     E  
Sbjct: 247 LLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHI--SLDHHSMTLTPDEVK 304

Query: 199 PAQASFFIAYVVTSGWTSISSELFRMFPLICSFISRLCCHNAS----------------- 241
               S  + Y+       +  E+    P   S I+       +                 
Sbjct: 305 ----SLLLKYLDCRP-QDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTII 359

Query: 242 ----DDLEVP----------SI-PYHSEIPRVIFSVLLGITYFFLAPLILPFLLVYYCLG 286
               + LE P          S+ P  + IP ++ S++          +++  L  Y  + 
Sbjct: 360 ESSLNVLE-PAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVE 418

Query: 287 -------YIIY----------------RNQLLNVYAP--KFETGGKFWPIVHNSTIFSLL 321
                    I                    +++ Y     F++     P +     +S +
Sbjct: 419 KQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQ-YFYSHI 477

Query: 322 LMHVIAIG----------IFGL------KKLPLA-SSLVIPLPVLTLLFNEYCRKRFLPI 364
             H+  I           +F L      +K+    ++      +L  L         L  
Sbjct: 478 GHHLKNIEHPERMTLFRMVF-LDFRFLEQKIRHDSTAWNASGSILNTLQQ-------LKF 529

Query: 365 FEAYPTECLVKKDREDQNDATMAEFYEKLVTAYQD 399
           ++ Y  +          ND      YE+LV A  D
Sbjct: 530 YKPYICD----------NDPK----YERLVNAILD 550

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	424
2diu_A	96	KIAA0430 protein; structural genomics, RRM domain,	94.87
2dnz_A	95	Probable RNA-binding protein 23; RNA recognition m	92.26
3p5t_L	90	Cleavage and polyadenylation specificity factor S;	91.89
2d9o_A	100	DNAJ (HSP40) homolog, subfamily C, member 17; RRM	91.37
4fxv_A	99	ELAV-like protein 1; RNA recognition motif, putati	91.08
1whw_A	99	Hypothetical protein riken cDNA 1200009A02; RNA re	90.24
2jrs_A	108	RNA-binding protein 39; RNA binding motif of RBM39	90.18
1x5t_A	96	Splicing factor 3B subunit 4; structure genomics,	90.17
1jmt_A	104	Splicing factor U2AF 35 kDa subunit; RRM, RNA spli	90.02
2dgp_A	106	Bruno-like 4, RNA binding protein; RRM domain, str	89.85
2cqp_A	98	RNA-binding protein 12; RNA recognition motif, RRM	89.7
2a3j_A	127	U1 small nuclear ribonucleoprotein A; computationa	89.55
2fy1_A	116	RNA-binding motif protein, Y chromosome, family 1	89.53
2x1f_A	96	MRNA 3'-END-processing protein RNA15; transcriptio	89.53
2dgv_A	92	HnRNP M, heterogeneous nuclear ribonucleoprotein M	89.46
2dit_A	112	HIV TAT specific factor 1 variant; structural geno	89.2
1x5u_A	105	Splicing factor 3B subunit 4 (spliceosome associat	89.2
4a8x_A	88	RNA-binding protein with serine-rich domain 1; tra	89.19
1x5s_A	102	Cold-inducible RNA-binding protein; structure geno	89.13
2mss_A	75	Protein (musashi1); RNA-binding domain, RNA bindin	88.92
2cph_A	107	RNA binding motif protein 19; RNA recognition moti	88.87
2fc8_A	102	NCL protein; structure genomics, RRM_1 domain, str	88.81
2dnl_A	114	Cytoplasmic polyadenylation element binding protei	88.77
3s8s_A	110	Histone-lysine N-methyltransferase SETD1A; chromat	88.66
3mdf_A	85	Peptidyl-prolyl CIS-trans isomerase E; RRM domain,	88.64
2lkz_A	95	RNA-binding protein 5; RRM; NMR {Homo sapiens}	88.51
2dgs_A	99	DAZ-associated protein 1; RRM domain, structural g	88.43
2lxi_A	91	RNA-binding protein 10; NMR {Homo sapiens}	88.37
2d9p_A	103	Polyadenylate-binding protein 3; RRM domain, struc	88.16
2e5j_A	97	Methenyltetrahydrofolate synthetase domain contain	88.11
3md1_A	83	Nuclear and cytoplasmic polyadenylated RNA-bindin	88.07
1fxl_A	167	Paraneoplastic encephalomyelitis antigen HUD; prot	87.88
2la6_A	99	RNA-binding protein FUS; structural genomics, nort	87.78
3ns6_A	100	Eukaryotic translation initiation factor 3 subuni;	87.73
2do4_A	100	Squamous cell carcinoma antigen recognized by T- c	87.73
2dnh_A	105	Bruno-like 5, RNA binding protein; RRM domain, RBD	87.61
2cpx_A	115	Hypothetical protein FLJ11016; RRM domain, structu	87.54
2ki2_A	90	SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA	87.32
2fc9_A	101	NCL protein; structure genomics, RRM_1 domain, str	87.24
2krb_A	81	Eukaryotic translation initiation factor 3 subunit	87.09
1wg1_A	88	KIAA1579 protein, homolog EXC-7; RBD, structural g	87.01
3bs9_A	87	Nucleolysin TIA-1 isoform P40; RNA recognition mot	87.01
2e44_A	96	Insulin-like growth factor 2 mRNA binding protein	86.93
1fj7_A	101	Nucleolin RBD1, protein C23; RNP, RRM, RNA binding	86.82
1p1t_A	104	Cleavage stimulation factor, 64 kDa subunit; RNA r	86.73
1nu4_A	97	U1A RNA binding domain; RNA recognition motif, U1	86.71
2cq0_A	103	Eukaryotic translation initiation factor 3 subunit	86.64
1wi8_A	104	EIF-4B, eukaryotic translation initiation factor 4	86.58
2j76_E	100	EIF-4B, EIF4B, eukaryotic translation initiation f	86.52
2pe8_A	105	Splicing factor 45; RRM, protein binding; 2.00A {H	86.47
2e5h_A	94	Zinc finger CCHC-type and RNA-binding motif- conta	86.36
2cpe_A	113	RNA-binding protein EWS; RNA recognition motif, RR	86.33
1uaw_A	77	Mouse-musashi-1; RNP-type structure, RNA binding p	86.17
2dnq_A	90	RNA-binding protein 4B; RRM domain,RBD, structural	86.12
2kt5_A	124	RNA and export factor-binding protein 2; chaperone	86.08
2dhg_A	104	TRNA selenocysteine associated protein (SECP43); R	86.0
2cqb_A	102	Peptidyl-prolyl CIS-trans isomerase E; RNA recogni	85.8
2cpi_A	111	CCR4-NOT transcription complex subunit 4; RNA reco	85.77
2div_A	99	TRNA selenocysteine associated protein; structural	85.69
1b7f_A	168	Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP	85.67
2dnm_A	103	SRP46 splicing factor; RRM domain, RBD, structural	85.56
2nlw_A	105	Eukaryotic translation initiation factor 3 subunit	85.54
1p27_B	106	RNA-binding protein 8A; nuclear protein, mRNA spli	85.46
2jvr_A	111	Nucleolar protein 3; RNA recognition motif, nucleu	85.45
1iqt_A	75	AUF1, heterogeneous nuclear ribonucleoprotein D0;	85.41
2cqg_A	103	TDP-43, TAR DNA-binding protein-43; RNA recognitio	85.24
3lqv_A	115	PRE-mRNA branch site protein P14; cysless mutant,	85.23
2cpj_A	99	Non-POU domain-containing octamer-binding protein;	85.19
2cpf_A	98	RNA binding motif protein 19; RNA recognition moti	84.98
2cpz_A	115	CUG triplet repeat RNA-binding protein 1; RRM doma	84.96
1x4a_A	109	Splicing factor, arginine/serine-rich 1 (splicing	84.95
1fjc_A	96	Nucleolin RBD2, protein C23; RNP, RRM, RNA binding	84.94
1x4h_A	111	RNA-binding protein 28; structural genomics, RRM d	84.92
2cqi_A	103	Nucleolysin TIAR; RNA recognition motif, RRM, RNA	84.83
3smz_A	284	Protein raver-1, ribonucleoprotein PTB-binding 1;	84.76
2ek1_A	95	RNA-binding protein 12; RNA recognition motif, dim	84.76
2dgo_A	115	Cytotoxic granule-associated RNA binding protein 1	84.65
2cqc_A	95	Arginine/serine-rich splicing factor 10; RNA recog	84.63
2kvi_A	96	Nuclear polyadenylated RNA-binding protein 3; RNA-	84.62
1x5p_A	97	Negative elongation factor E; structure genomics,	84.49
1oo0_B	110	CG8781-PA, drosophila Y14; RNA recognition motif,	84.24
3ex7_B	126	RNA-binding protein 8A; protein-RNA complex, mRNA	84.04
1wf1_A	110	RNA-binding protein RALY; structural genomics, RRM	84.01
2cq3_A	103	RNA-binding protein 9; RRM domain, structural geno	83.87
1why_A	97	Hypothetical protein riken cDNA 1810017N16; RNA re	83.85
2dis_A	109	Unnamed protein product; structural genomics, RRM	83.77
3v4m_A	105	Splicing factor U2AF 65 kDa subunit; canonical RNA	83.73
3ucg_A	89	Polyadenylate-binding protein 2; ferredoxin-like,	83.71
2kxn_B	129	Transformer-2 protein homolog beta; SR protein, RR	83.47
2dgw_A	91	Probable RNA-binding protein 19; RRM domain, struc	83.41
2dgx_A	96	KIAA0430 protein; RRM domain, structural genomics,	83.4
1sjr_A	164	Polypyrimidine tract-binding protein 1; extended b	83.24
3ulh_A	107	THO complex subunit 4; nuclear protein, RNA bindin	83.18
2cqd_A	116	RNA-binding region containing protein 1; RNA recog	83.18
4f25_A	115	Polyadenylate-binding protein 1; RRM fold, transla	83.18
2ywk_A	95	Putative RNA-binding protein 11; RRM-domain, struc	83.11
1whx_A	111	Hypothetical protein riken cDNA 1200009A02; RNA re	82.9
1h2v_Z	156	20 kDa nuclear CAP binding protein; CAP-binding-co	82.81
2dng_A	103	Eukaryotic translation initiation factor 4H; RRM d	82.71
2dgu_A	103	Heterogeneous nuclear ribonucleoprotein Q; RRM dom	82.44
2cqh_A	93	IGF-II mRNA-binding protein 2 isoform A; RNA recog	82.23
1wg5_A	104	Heterogeneous nuclear ribonucleoprotein H; structu	81.61
2hvz_A	101	Splicing factor, arginine/serine-rich 7; RRM, RNA	81.6
1x4g_A	109	Nucleolysin TIAR; structural genomics, RRM domain,	81.52
2la4_A	101	Nuclear and cytoplasmic polyadenylated RNA-bindin	81.31
1x5o_A	114	RNA binding motif, single-stranded interacting pro	81.22
3nmr_A	175	Cugbp ELAV-like family member 1; RRM, PRE-mRNA spl	81.15
1x4e_A	85	RNA binding motif, single-stranded interacting pro	81.13
2lmi_A	107	GRSF-1, G-rich sequence factor 1; G-rich RNA seque	81.07
2bz2_A	121	Negative elongation factor E; NELF E, RNA recognit	80.74
2lea_A	135	Serine/arginine-rich splicing factor 2; SR protein	80.58
2err_A	109	Ataxin-2-binding protein 1; protein-RNA complex, R	80.21
2khc_A	118	Testis-specific RNP-type RNA binding protein; RRM,	80.05

>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=94.87  E-value=0.035  Score=43.65  Aligned_cols=41  Identities=12%  Similarity=0.136  Sum_probs=36.0

Q ss_pred             ceEEEEeCCHHHHHHHHHhccCCCC--CcceeccCCCCCCeec
Q 014468           12 AAAFVSFNSRYGAAIALHIQQGVNP--TEWVTEQAPAPQDVHW   52 (424)
Q Consensus        12 ~~aFVtF~s~~~A~~a~q~~~~~~~--~~~~v~~AP~P~DIiW   52 (424)
                      |.|||+|+++++|+.|.+.+.....  ..++++.|+..+|++=
T Consensus        47 G~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v~~A~~~sd~~~   89 (96)
T 2diu_A           47 CSAILRFINQDSAERAQKRMENEDVFGNRIIVSFTPKNRELCE   89 (96)
T ss_dssp             TCEEEEESSHHHHHHHHHHHTTCCSSSSCCEEESSCCSCCCCC
T ss_pred             CEEEEEECCHHHHHHHHHHhcCCccCCceEEEEecCCCcceeE
Confidence            8999999999999999998887654  5789999999999863

>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=92.26  E-value=0.22  Score=38.15  Aligned_cols=41  Identities=17%  Similarity=0.209  Sum_probs=31.4

Q ss_pred             cCCCceEEEEeCCHHHHHHHHHhccCCC--CCcceeccCCCCC
Q 014468            8 GKEVAAAFVSFNSRYGAAIALHIQQGVN--PTEWVTEQAPAPQ   48 (424)
Q Consensus         8 ~~~~~~aFVtF~s~~~A~~a~q~~~~~~--~~~~~v~~AP~P~   48 (424)
                      .++.+.|||+|++.++|..|.+.+....  ...++|+.|.+..
T Consensus        44 ~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~   86 (95)
T 2dnz_A           44 GRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHVTERL   86 (95)
T ss_dssp             CCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEESSCCC
T ss_pred             CceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEccccc
Confidence            4567899999999999999999776543  3457777775544

>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C

Probab=91.89  E-value=0.11  Score=39.81  Aligned_cols=41  Identities=12%  Similarity=0.086  Sum_probs=28.1

Q ss_pred             cCCCceEEEEeCCHHHHHHHHHhccCCC--CCcceeccCCCCC
Q 014468            8 GKEVAAAFVSFNSRYGAAIALHIQQGVN--PTEWVTEQAPAPQ   48 (424)
Q Consensus         8 ~~~~~~aFVtF~s~~~A~~a~q~~~~~~--~~~~~v~~AP~P~   48 (424)
                      +++.|.|||+|++.++|..|.+.+....  ...++|+.|..|.
T Consensus        42 g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~~~~   84 (90)
T 3p5t_L           42 GQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSNKLE   84 (90)
T ss_dssp             CCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC----
T ss_pred             CccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECCCCc
Confidence            4557899999999999999998877643  3456777665443

>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=91.37  E-value=0.31  Score=38.44  Aligned_cols=38  Identities=18%  Similarity=0.187  Sum_probs=29.6

Q ss_pred             cCCCceEEEEeCCHHHHHHHHHhccCCCCCcceeccCC
Q 014468            8 GKEVAAAFVSFNSRYGAAIALHIQQGVNPTEWVTEQAP   45 (424)
Q Consensus         8 ~~~~~~aFVtF~s~~~A~~a~q~~~~~~~~~~~v~~AP   45 (424)
                      +++.+.|||+|++.++|..|.+.........++|+.|-
T Consensus        51 ~~~rGfaFVeF~~~~~A~~Ai~~~~~~~g~~l~V~~a~   88 (100)
T 2d9o_A           51 SKKPGTAVVEFATVKAAELAVQNEVGLVDNPLKISWLE   88 (100)
T ss_dssp             SSSSSEEEEEESCHHHHHHHHHTCCBCSSSBCEEECSS
T ss_pred             cCCCCEEEEEECCHHHHHHHHHhcCCCCCCeEEEEEcc
Confidence            46789999999999999999988554444556677663

>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}

Probab=91.08  E-value=0.16  Score=39.80  Aligned_cols=37  Identities=19%  Similarity=0.294  Sum_probs=28.3

Q ss_pred             cCCCceEEEEeCCHHHHHHHHHhccCCC--CCcceeccC
Q 014468            8 GKEVAAAFVSFNSRYGAAIALHIQQGVN--PTEWVTEQA   44 (424)
Q Consensus         8 ~~~~~~aFVtF~s~~~A~~a~q~~~~~~--~~~~~v~~A   44 (424)
                      +++.|.|||+|++.++|..|.+.+....  ...++|+.|
T Consensus        58 g~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~A   96 (99)
T 4fxv_A           58 GHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYA   96 (99)
T ss_dssp             CCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred             CcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence            4456799999999999999998876543  235667666

>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1

Probab=90.24  E-value=0.37  Score=37.17  Aligned_cols=42  Identities=19%  Similarity=0.029  Sum_probs=30.7

Q ss_pred             ccCCCceEEEEeCCHHHHHHHHHhccCCC--CCcceeccCCCCC
Q 014468            7 AGKEVAAAFVSFNSRYGAAIALHIQQGVN--PTEWVTEQAPAPQ   48 (424)
Q Consensus         7 ~~~~~~~aFVtF~s~~~A~~a~q~~~~~~--~~~~~v~~AP~P~   48 (424)
                      ..++.+.|||+|++.++|..|.+.+....  ...++|+.|-.++
T Consensus        46 ~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~   89 (99)
T 1whw_A           46 TKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPSTIKK   89 (99)
T ss_dssp             TCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEECCCCS
T ss_pred             CCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCCCc
Confidence            34567899999999999999998776542  3456676664443

>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}

Probab=90.18  E-value=0.27  Score=39.03  Aligned_cols=42  Identities=19%  Similarity=0.260  Sum_probs=32.3

Q ss_pred             cCCCceEEEEeCCHHHHHHHHHhccCCC--CCcceeccCCCCCC
Q 014468            8 GKEVAAAFVSFNSRYGAAIALHIQQGVN--PTEWVTEQAPAPQD   49 (424)
Q Consensus         8 ~~~~~~aFVtF~s~~~A~~a~q~~~~~~--~~~~~v~~AP~P~D   49 (424)
                      +++.+.|||+|++.++|..|.+.+....  ...++|+.|-+..|
T Consensus        65 g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~k~d  108 (108)
T 2jrs_A           65 GRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHVTERTD  108 (108)
T ss_dssp             TEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEECSCSSCC
T ss_pred             CccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEcccCCC
Confidence            3457899999999999999998876653  34677887766554

>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=90.17  E-value=0.38  Score=36.84  Aligned_cols=39  Identities=21%  Similarity=0.203  Sum_probs=29.4

Q ss_pred             ccCCCceEEEEeCCHHHHHHHHHhccCCC--CCcceeccCC
Q 014468            7 AGKEVAAAFVSFNSRYGAAIALHIQQGVN--PTEWVTEQAP   45 (424)
Q Consensus         7 ~~~~~~~aFVtF~s~~~A~~a~q~~~~~~--~~~~~v~~AP   45 (424)
                      ..++.+.|||+|++.++|..|.+.+....  ...++|+.|-
T Consensus        44 ~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~   84 (96)
T 1x5t_A           44 TGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAF   84 (96)
T ss_dssp             TCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEESC
T ss_pred             CCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEec
Confidence            34567899999999999999999776553  3356666663

>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3

Probab=90.02  E-value=0.24  Score=39.24  Aligned_cols=38  Identities=18%  Similarity=0.115  Sum_probs=29.4

Q ss_pred             cCCCceEEEEeCCHHHHHHHHHhccCCC--CCcceeccCC
Q 014468            8 GKEVAAAFVSFNSRYGAAIALHIQQGVN--PTEWVTEQAP   45 (424)
Q Consensus         8 ~~~~~~aFVtF~s~~~A~~a~q~~~~~~--~~~~~v~~AP   45 (424)
                      +++.|.|||+|++..+|..|.+.+....  ....+|+.+|
T Consensus        65 ~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i~v~~sp  104 (104)
T 1jmt_A           65 DHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIHAELSP  104 (104)
T ss_dssp             SSSEEEEEEEESCHHHHHHHHHHHTTCEETTEECCEEECC
T ss_pred             CCccEEEEEEECCHHHHHHHHHHHCCCEECCEEEEEEEcC
Confidence            3568999999999999999999887653  2345566665

>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A

Probab=89.85  E-value=0.53  Score=36.75  Aligned_cols=39  Identities=18%  Similarity=0.168  Sum_probs=30.2

Q ss_pred             cCCCceEEEEeCCHHHHHHHHHhccCCC-----CCcceeccCCC
Q 014468            8 GKEVAAAFVSFNSRYGAAIALHIQQGVN-----PTEWVTEQAPA   46 (424)
Q Consensus         8 ~~~~~~aFVtF~s~~~A~~a~q~~~~~~-----~~~~~v~~AP~   46 (424)
                      .+..+.|||+|.+.++|..|.+.+....     ...++|+.|-.
T Consensus        52 g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~a~~   95 (106)
T 2dgp_A           52 GMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQVKPADS   95 (106)
T ss_dssp             CSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEEEECCC
T ss_pred             CCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEEEEECCc
Confidence            4567899999999999999998776543     35677777643

>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1

Probab=89.70  E-value=0.29  Score=37.78  Aligned_cols=40  Identities=20%  Similarity=0.140  Sum_probs=30.8

Q ss_pred             CCCceEEEEeCCHHHHHHHHHhccCCC--CCcceeccCCCCC
Q 014468            9 KEVAAAFVSFNSRYGAAIALHIQQGVN--PTEWVTEQAPAPQ   48 (424)
Q Consensus         9 ~~~~~aFVtF~s~~~A~~a~q~~~~~~--~~~~~v~~AP~P~   48 (424)
                      ++.+.|||+|++.++|..|.+.+....  ...++|+.|-.|.
T Consensus        55 ~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~~   96 (98)
T 2cqp_A           55 MPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLGSGPS   96 (98)
T ss_dssp             CEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEESSCSS
T ss_pred             CeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEcCCCC
Confidence            456899999999999999998877543  3457777776553

>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}

Probab=89.55  E-value=0.35  Score=39.89  Aligned_cols=46  Identities=17%  Similarity=0.183  Sum_probs=36.3

Q ss_pred             cCCCceEEEEeCCHHHHHHHHHhccCCC--CCcceeccCCCCCCeecC
Q 014468            8 GKEVAAAFVSFNSRYGAAIALHIQQGVN--PTEWVTEQAPAPQDVHWP   53 (424)
Q Consensus         8 ~~~~~~aFVtF~s~~~A~~a~q~~~~~~--~~~~~v~~AP~P~DIiW~   53 (424)
                      .+..|.|||+|.+.++|..|.+.+....  ...++|+.|-.++|...+
T Consensus        69 ~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~V~~a~~~~~~~~~  116 (127)
T 2a3j_A           69 DDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLVITFSETPQSQVAE  116 (127)
T ss_dssp             CSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCEEEECCCCCHHHHC
T ss_pred             CCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEEEEEccCcchhccc
Confidence            4667999999999999999998887654  346778888777776654

>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}

Probab=89.53  E-value=0.53  Score=37.82  Aligned_cols=38  Identities=26%  Similarity=0.226  Sum_probs=28.5

Q ss_pred             cCCCceEEEEeCCHHHHHHHHHhccCCC--CCcceeccCC
Q 014468            8 GKEVAAAFVSFNSRYGAAIALHIQQGVN--PTEWVTEQAP   45 (424)
Q Consensus         8 ~~~~~~aFVtF~s~~~A~~a~q~~~~~~--~~~~~v~~AP   45 (424)
                      ++..+.|||+|++.++|..|.+.+....  ...++|+.|-
T Consensus        45 g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~   84 (116)
T 2fy1_A           45 SKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQAK   84 (116)
T ss_dssp             TTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEECC
T ss_pred             CCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECC
Confidence            4567999999999999999999876543  2345566553

>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B

Probab=89.53  E-value=0.37  Score=37.04  Aligned_cols=40  Identities=18%  Similarity=0.199  Sum_probs=30.2

Q ss_pred             cCCCceEEEEeCCHHHHHHHHHhccCCC--CCcceeccCCCC
Q 014468            8 GKEVAAAFVSFNSRYGAAIALHIQQGVN--PTEWVTEQAPAP   47 (424)
Q Consensus         8 ~~~~~~aFVtF~s~~~A~~a~q~~~~~~--~~~~~v~~AP~P   47 (424)
                      ++..+.|||+|++.++|..|.+.+....  ...++|+.|-++
T Consensus        41 g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~   82 (96)
T 2x1f_A           41 GRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSSNS   82 (96)
T ss_dssp             CCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSCS
T ss_pred             CccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcCCC
Confidence            4568999999999999999998876542  345667766433

>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A

Probab=89.46  E-value=0.34  Score=36.76  Aligned_cols=40  Identities=23%  Similarity=0.199  Sum_probs=29.3

Q ss_pred             cCCCceEEEEeCCHHHHHHHHHhccCCC--CCcceeccCCCC
Q 014468            8 GKEVAAAFVSFNSRYGAAIALHIQQGVN--PTEWVTEQAPAP   47 (424)
Q Consensus         8 ~~~~~~aFVtF~s~~~A~~a~q~~~~~~--~~~~~v~~AP~P   47 (424)
                      .++.+.|||+|++.++|..|.+.+....  ...++|+.|-.+
T Consensus        45 g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~   86 (92)
T 2dgv_A           45 GKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRIDRNA   86 (92)
T ss_dssp             SCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEECSCC
T ss_pred             CCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCCC
Confidence            3457899999999999999999876543  234566665433

>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=89.20  E-value=0.57  Score=37.31  Aligned_cols=48  Identities=15%  Similarity=0.025  Sum_probs=35.9

Q ss_pred             ccCCCceEEEEeCCHHHHHHHHHhccCCC--CCcceeccCCCCCCeecCC
Q 014468            7 AGKEVAAAFVSFNSRYGAAIALHIQQGVN--PTEWVTEQAPAPQDVHWPF   54 (424)
Q Consensus         7 ~~~~~~~aFVtF~s~~~A~~a~q~~~~~~--~~~~~v~~AP~P~DIiW~N   54 (424)
                      +.++.|.|||+|++..+|..|.+.+....  ...++|+.|.+..|.-++.
T Consensus        60 ~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~l~v~~a~~~~~~~~~~  109 (112)
T 2dit_A           60 DRHPDGVASVSFRDPEEADYCIQTLDGRWFGGRQITAQAWDGTTDYQSGP  109 (112)
T ss_dssp             TTCTTCEEEEECSCHHHHHHHHHHSTTCEETTEECEEEECCSCCCSSCCC
T ss_pred             cCCCCEEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEeCCCCCcccCC
Confidence            34568999999999999999999887653  3457788876666654443

>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=89.20  E-value=0.6  Score=36.38  Aligned_cols=40  Identities=25%  Similarity=0.287  Sum_probs=30.3

Q ss_pred             ccCCCceEEEEeCCHHHHHHHHHhccCCC--CCcceeccCCC
Q 014468            7 AGKEVAAAFVSFNSRYGAAIALHIQQGVN--PTEWVTEQAPA   46 (424)
Q Consensus         7 ~~~~~~~aFVtF~s~~~A~~a~q~~~~~~--~~~~~v~~AP~   46 (424)
                      ..++.+.|||+|++.++|..|.+.+....  ...++|+.|-.
T Consensus        53 ~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~   94 (105)
T 1x5u_A           53 TGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNKASA   94 (105)
T ss_dssp             SCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEEETTT
T ss_pred             CCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECCC
Confidence            34567899999999999999999877543  34567776643

>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}

Probab=89.19  E-value=0.3  Score=36.65  Aligned_cols=37  Identities=24%  Similarity=0.199  Sum_probs=28.2

Q ss_pred             CCceEEEEeCCHHHHHHHHHhccCCC--CCcceeccCCC
Q 014468           10 EVAAAFVSFNSRYGAAIALHIQQGVN--PTEWVTEQAPA   46 (424)
Q Consensus        10 ~~~~aFVtF~s~~~A~~a~q~~~~~~--~~~~~v~~AP~   46 (424)
                      ..+.|||+|++.++|..|.+.+....  ...++|+.|-.
T Consensus        46 ~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~   84 (88)
T 4a8x_A           46 SKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAVLA   84 (88)
T ss_dssp             ECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEECC
T ss_pred             CCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEECCC
Confidence            68899999999999999999876653  23456665533

>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=89.13  E-value=0.43  Score=37.02  Aligned_cols=38  Identities=21%  Similarity=0.206  Sum_probs=28.9

Q ss_pred             cCCCceEEEEeCCHHHHHHHHHhccCCC--CCcceeccCC
Q 014468            8 GKEVAAAFVSFNSRYGAAIALHIQQGVN--PTEWVTEQAP   45 (424)
Q Consensus         8 ~~~~~~aFVtF~s~~~A~~a~q~~~~~~--~~~~~v~~AP   45 (424)
                      .++.+.|||+|++.++|..|.+.+....  ...++|+.|-
T Consensus        51 ~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~   90 (102)
T 1x5s_A           51 QRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQAG   90 (102)
T ss_dssp             CSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEEEE
T ss_pred             CCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence            3467899999999999999998876543  3456666653

>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A

Probab=88.92  E-value=0.47  Score=34.46  Aligned_cols=23  Identities=17%  Similarity=0.189  Sum_probs=19.7

Q ss_pred             ccCCCceEEEEeCCHHHHHHHHH
Q 014468            7 AGKEVAAAFVSFNSRYGAAIALH   29 (424)
Q Consensus         7 ~~~~~~~aFVtF~s~~~A~~a~q   29 (424)
                      .+++.+.|||+|++.++|..|.+
T Consensus        37 ~~~~~g~afV~f~~~~~a~~a~~   59 (75)
T 2mss_A           37 TNRHRGFGFVTFESEDIVEKVCE   59 (75)
T ss_dssp             STTSCBEEEEECSCHHHHHHHHS
T ss_pred             CCCcCcEEEEEECCHHHHHHHHH
Confidence            34567899999999999999886

>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1

Probab=88.87  E-value=0.7  Score=36.05  Aligned_cols=41  Identities=22%  Similarity=0.251  Sum_probs=30.4

Q ss_pred             ccCCCceEEEEeCCHHHHHHHHHhc-cCCC--CCcceeccCCCC
Q 014468            7 AGKEVAAAFVSFNSRYGAAIALHIQ-QGVN--PTEWVTEQAPAP   47 (424)
Q Consensus         7 ~~~~~~~aFVtF~s~~~A~~a~q~~-~~~~--~~~~~v~~AP~P   47 (424)
                      ..+..+.|||+|.+.++|..|.+.+ ....  ...++|+.|-..
T Consensus        54 ~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~v~~a~~~   97 (107)
T 2cph_A           54 TGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVLEWADSE   97 (107)
T ss_dssp             SCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCEEEECCCC
T ss_pred             CCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEEEEeCCCC
Confidence            3456889999999999999999887 4432  345677766433

>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=88.81  E-value=0.37  Score=37.44  Aligned_cols=39  Identities=23%  Similarity=0.202  Sum_probs=29.1

Q ss_pred             cCCCceEEEEeCCHHHHHHHHHhccCCC--CCcceeccCCC
Q 014468            8 GKEVAAAFVSFNSRYGAAIALHIQQGVN--PTEWVTEQAPA   46 (424)
Q Consensus         8 ~~~~~~aFVtF~s~~~A~~a~q~~~~~~--~~~~~v~~AP~   46 (424)
                      .+..+.|||+|++.++|..|.+.+....  ...++|+.|-.
T Consensus        51 ~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~   91 (102)
T 2fc8_A           51 GSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKP   91 (102)
T ss_dssp             CSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred             CCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEecC
Confidence            3456899999999999999998776543  23566766643

>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=88.77  E-value=0.27  Score=39.32  Aligned_cols=25  Identities=12%  Similarity=0.036  Sum_probs=21.8

Q ss_pred             cCCCceEEEEeCCHHHHHHHHHhcc
Q 014468            8 GKEVAAAFVSFNSRYGAAIALHIQQ   32 (424)
Q Consensus         8 ~~~~~~aFVtF~s~~~A~~a~q~~~   32 (424)
                      +++.+.|||+|++.++|+.|.+.++
T Consensus        49 g~~~G~aFV~f~~~~~a~~Ai~~~~   73 (114)
T 2dnl_A           49 FPPKGYAFLLFQEESSVQALIDACL   73 (114)
T ss_dssp             SCTTSEEEECCSSHHHHHHHHHHSE
T ss_pred             CCcccEEEEEECCHHHHHHHHHhhh
Confidence            4668999999999999999998763

>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}

Probab=88.66  E-value=0.32  Score=38.93  Aligned_cols=39  Identities=18%  Similarity=0.036  Sum_probs=30.7

Q ss_pred             cCCCceEEEEeCCHHHHHHHHHhccCCC--CCcceeccCCC
Q 014468            8 GKEVAAAFVSFNSRYGAAIALHIQQGVN--PTEWVTEQAPA   46 (424)
Q Consensus         8 ~~~~~~aFVtF~s~~~A~~a~q~~~~~~--~~~~~v~~AP~   46 (424)
                      +++.+.|||+|++.++|+.|.+.+....  ...++|+.|+.
T Consensus        45 g~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a~~   85 (110)
T 3s8s_A           45 RKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLDIK   85 (110)
T ss_dssp             CCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECST
T ss_pred             CceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCC
Confidence            4567899999999999999999887653  34567777753

>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*

Probab=88.64  E-value=0.34  Score=36.15  Aligned_cols=28  Identities=29%  Similarity=0.242  Sum_probs=23.5

Q ss_pred             cCCCceEEEEeCCHHHHHHHHHhccCCC
Q 014468            8 GKEVAAAFVSFNSRYGAAIALHIQQGVN   35 (424)
Q Consensus         8 ~~~~~~aFVtF~s~~~A~~a~q~~~~~~   35 (424)
                      +++.+.|||+|++.++|..|.+.+....
T Consensus        46 ~~~~g~afV~f~~~~~a~~A~~~l~g~~   73 (85)
T 3mdf_A           46 EKHRGFAFVEFELAEDAAAAIDNMNESE   73 (85)
T ss_dssp             TEECSEEEEEESSHHHHHHHHHHHTTCE
T ss_pred             CccccEEEEEECCHHHHHHHHHHhCCCE
Confidence            4467899999999999999998776553

>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}

Probab=88.51  E-value=0.29  Score=38.14  Aligned_cols=37  Identities=24%  Similarity=0.226  Sum_probs=28.1

Q ss_pred             cCCCceEEEEeCCHHHHHHHHHhccCCC------CCcceeccC
Q 014468            8 GKEVAAAFVSFNSRYGAAIALHIQQGVN------PTEWVTEQA   44 (424)
Q Consensus         8 ~~~~~~aFVtF~s~~~A~~a~q~~~~~~------~~~~~v~~A   44 (424)
                      +++.|.|||+|.+.++|..|.+.+....      ...+.|+.|
T Consensus        50 g~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~i~V~~A   92 (95)
T 2lkz_A           50 QQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKTIGVDFA   92 (95)
T ss_dssp             SSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEEEEEEEC
T ss_pred             CCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEEEEEEEc
Confidence            4567899999999999999999887643      234556555

>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=88.43  E-value=0.77  Score=35.36  Aligned_cols=40  Identities=10%  Similarity=0.132  Sum_probs=29.0

Q ss_pred             cCCCceEEEEeCCHHHHHHHHHhccCCC--CCcceeccCCCCC
Q 014468            8 GKEVAAAFVSFNSRYGAAIALHIQQGVN--PTEWVTEQAPAPQ   48 (424)
Q Consensus         8 ~~~~~~aFVtF~s~~~A~~a~q~~~~~~--~~~~~v~~AP~P~   48 (424)
                      +++.+.|||+|++.++|..|.+ +....  ...++|+.|-.++
T Consensus        49 ~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~~a~~~~   90 (99)
T 2dgs_A           49 QRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVKRAEPRD   90 (99)
T ss_dssp             CSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEEECCCCC
T ss_pred             CCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEEECCCCc
Confidence            4567899999999999999998 54332  3456677664443

>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}

Probab=88.37  E-value=0.5  Score=36.17  Aligned_cols=37  Identities=19%  Similarity=0.128  Sum_probs=27.4

Q ss_pred             cCCCceEEEEeCCHHHHHHHHHhccCC---CCCcceeccC
Q 014468            8 GKEVAAAFVSFNSRYGAAIALHIQQGV---NPTEWVTEQA   44 (424)
Q Consensus         8 ~~~~~~aFVtF~s~~~A~~a~q~~~~~---~~~~~~v~~A   44 (424)
                      +++.|.|||+|.+.++|..|.+...+.   +...++|+.|
T Consensus        41 ~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a   80 (91)
T 2lxi_A           41 GQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS   80 (91)
T ss_dssp             CCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred             CCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence            456789999999999999998765432   2345667655

>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=88.16  E-value=0.56  Score=36.45  Aligned_cols=38  Identities=24%  Similarity=0.219  Sum_probs=29.0

Q ss_pred             cCCCceEEEEeCCHHHHHHHHHhccCCC--CCcceeccCC
Q 014468            8 GKEVAAAFVSFNSRYGAAIALHIQQGVN--PTEWVTEQAP   45 (424)
Q Consensus         8 ~~~~~~aFVtF~s~~~A~~a~q~~~~~~--~~~~~v~~AP   45 (424)
                      .+..+.|||+|++.++|..|.+.+....  ...++|+.|-
T Consensus        52 g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~   91 (103)
T 2d9p_A           52 GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ   91 (103)
T ss_dssp             SSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECS
T ss_pred             CCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEec
Confidence            3567899999999999999999776543  3456666653

>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=88.11  E-value=0.74  Score=35.38  Aligned_cols=40  Identities=18%  Similarity=0.150  Sum_probs=30.9

Q ss_pred             cCCCceEEEEeCCHHHHHHHHHhccCCC--CCcceeccCCCC
Q 014468            8 GKEVAAAFVSFNSRYGAAIALHIQQGVN--PTEWVTEQAPAP   47 (424)
Q Consensus         8 ~~~~~~aFVtF~s~~~A~~a~q~~~~~~--~~~~~v~~AP~P   47 (424)
                      .+..+.|||+|++..+|..|.+.+....  ...++|+.|-++
T Consensus        53 ~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~   94 (97)
T 2e5j_A           53 QGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALARQQ   94 (97)
T ss_dssp             ETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEECCCC
T ss_pred             CCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCCC
Confidence            4667999999999999999998877653  345777766443

>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0

Probab=88.07  E-value=0.46  Score=35.17  Aligned_cols=38  Identities=29%  Similarity=0.285  Sum_probs=28.9

Q ss_pred             cCCCceEEEEeCCHHHHHHHHHhccCCC--CCcceeccCC
Q 014468            8 GKEVAAAFVSFNSRYGAAIALHIQQGVN--PTEWVTEQAP   45 (424)
Q Consensus         8 ~~~~~~aFVtF~s~~~A~~a~q~~~~~~--~~~~~v~~AP   45 (424)
                      +++.+.|||+|++.++|..|.+.+....  ...++|+.|-
T Consensus        40 ~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~   79 (83)
T 3md1_A           40 GSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAA   79 (83)
T ss_dssp             CCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred             CCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecC
Confidence            4557899999999999999999876553  2346666663

>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A

Probab=87.88  E-value=0.64  Score=38.93  Aligned_cols=61  Identities=13%  Similarity=0.184  Sum_probs=41.1

Q ss_pred             cCCCceEEEEeCCHHHHHHHHHhccCCC--CCcceeccCCCC------CCeecCCCCCchHHHHHHHHH
Q 014468            8 GKEVAAAFVSFNSRYGAAIALHIQQGVN--PTEWVTEQAPAP------QDVHWPFFSSSFMKRWICKLA   68 (424)
Q Consensus         8 ~~~~~~aFVtF~s~~~A~~a~q~~~~~~--~~~~~v~~AP~P------~DIiW~NL~~~~~~r~~R~~~   68 (424)
                      +++.+.|||+|.+.++|..|.+.+....  ...++++.|...      ..+.=.||..+..+..++..+
T Consensus        41 ~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f  109 (167)
T 1fxl_A           41 GQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLF  109 (167)
T ss_dssp             CCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCCGGGTTCEEEEESCCTTCCHHHHHHHH
T ss_pred             CcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCCCcccCCCCcEEECCCCCcCCHHHHHHHH
Confidence            3456899999999999999998776543  234555555422      337777887766665555543

>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}

Probab=87.78  E-value=0.47  Score=36.68  Aligned_cols=37  Identities=27%  Similarity=0.197  Sum_probs=27.5

Q ss_pred             cCCCceEEEEeCCHHHHHHHHHhccCCC--CCcceeccC
Q 014468            8 GKEVAAAFVSFNSRYGAAIALHIQQGVN--PTEWVTEQA   44 (424)
Q Consensus         8 ~~~~~~aFVtF~s~~~A~~a~q~~~~~~--~~~~~v~~A   44 (424)
                      ++..|.|||+|++.++|..|.+.+....  ...++|+.|
T Consensus        60 g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~A   98 (99)
T 2la6_A           60 GKLKGEATVSFDDPPSAKAAIDWFDGKEFSGNPIKVSFA   98 (99)
T ss_dssp             CSEEEEEEEEBSSHHHHHHHHHHHTTCBSSSSBCEEEEC
T ss_pred             CCeeeEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEec
Confidence            3457899999999999999998776543  234555544

>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A

Probab=87.73  E-value=0.45  Score=37.08  Aligned_cols=37  Identities=19%  Similarity=0.105  Sum_probs=28.8

Q ss_pred             cCCCceEEEEeCCHHHHHHHHHhccCCCC---CcceeccC
Q 014468            8 GKEVAAAFVSFNSRYGAAIALHIQQGVNP---TEWVTEQA   44 (424)
Q Consensus         8 ~~~~~~aFVtF~s~~~A~~a~q~~~~~~~---~~~~v~~A   44 (424)
                      +++.|.|||+|.+..+|..|.+.+....-   ..++|+.|
T Consensus        51 g~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~l~V~~a   90 (100)
T 3ns6_A           51 GKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHRLFLYTM   90 (100)
T ss_dssp             TEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEES
T ss_pred             CccceEEEEEECCHHHHHHHHHHhCCcccCCCeEEEEEEC
Confidence            45679999999999999999998775532   34666665

>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=87.73  E-value=0.48  Score=36.63  Aligned_cols=39  Identities=18%  Similarity=0.229  Sum_probs=29.0

Q ss_pred             cCCCceEEEEeCCHHHHHHHHHhccCCC--CCcceeccCCC
Q 014468            8 GKEVAAAFVSFNSRYGAAIALHIQQGVN--PTEWVTEQAPA   46 (424)
Q Consensus         8 ~~~~~~aFVtF~s~~~A~~a~q~~~~~~--~~~~~v~~AP~   46 (424)
                      +++.+.|||+|++.++|..|.+.+....  ...++|+.|-.
T Consensus        55 g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~   95 (100)
T 2do4_A           55 GKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAISNS   95 (100)
T ss_dssp             SCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEECCC
T ss_pred             CCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECCC
Confidence            3456899999999999999998776532  34566776643

>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A

Probab=87.61  E-value=0.66  Score=36.13  Aligned_cols=38  Identities=34%  Similarity=0.502  Sum_probs=29.0

Q ss_pred             cCCCceEEEEeCCHHHHHHHHHhccCCC--C---CcceeccCC
Q 014468            8 GKEVAAAFVSFNSRYGAAIALHIQQGVN--P---TEWVTEQAP   45 (424)
Q Consensus         8 ~~~~~~aFVtF~s~~~A~~a~q~~~~~~--~---~~~~v~~AP   45 (424)
                      ++..+.|||+|++.++|..|.+.+....  .   ..++|+.|-
T Consensus        53 g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V~~a~   95 (105)
T 2dnh_A           53 GSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVKFAD   95 (105)
T ss_dssp             SCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEEEESC
T ss_pred             CCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEEEECc
Confidence            3446899999999999999998876543  2   457777663

>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=87.54  E-value=0.92  Score=35.91  Aligned_cols=38  Identities=29%  Similarity=0.350  Sum_probs=29.5

Q ss_pred             ccCCCceEEEEeCCHHHHHHHHHhccCCC--CCcceeccC
Q 014468            7 AGKEVAAAFVSFNSRYGAAIALHIQQGVN--PTEWVTEQA   44 (424)
Q Consensus         7 ~~~~~~~aFVtF~s~~~A~~a~q~~~~~~--~~~~~v~~A   44 (424)
                      .++..+.|||+|++..+|..|.+.+....  ...++|+.|
T Consensus        63 ~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a  102 (115)
T 2cpx_A           63 TGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEFG  102 (115)
T ss_dssp             CSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEEC
T ss_pred             CCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEc
Confidence            45677999999999999999999876543  345666665

>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}

Probab=87.32  E-value=0.49  Score=35.73  Aligned_cols=39  Identities=13%  Similarity=0.088  Sum_probs=27.8

Q ss_pred             cCCCceEEEEeCCHHHHHHHHHhccCCC--CCcceeccCCCC
Q 014468            8 GKEVAAAFVSFNSRYGAAIALHIQQGVN--PTEWVTEQAPAP   47 (424)
Q Consensus         8 ~~~~~~aFVtF~s~~~A~~a~q~~~~~~--~~~~~v~~AP~P   47 (424)
                      +++.+.|||+|++.+ |..|.+.+....  ...++|+.|..+
T Consensus        40 ~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~   80 (90)
T 2ki2_A           40 KKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK   80 (90)
T ss_dssp             CCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred             CCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence            456889999999999 999998776553  345667766443

>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=87.24  E-value=0.61  Score=36.09  Aligned_cols=38  Identities=26%  Similarity=0.162  Sum_probs=28.6

Q ss_pred             ccCCCceEEEEeCCHHHHHHHHHhccCCC--CCcceeccC
Q 014468            7 AGKEVAAAFVSFNSRYGAAIALHIQQGVN--PTEWVTEQA   44 (424)
Q Consensus         7 ~~~~~~~aFVtF~s~~~A~~a~q~~~~~~--~~~~~v~~A   44 (424)
                      ..+..+.|||+|++.++|..|.+.+....  ...++|+.|
T Consensus        49 ~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a   88 (101)
T 2fc9_A           49 NGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQ   88 (101)
T ss_dssp             SSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEEC
T ss_pred             CCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEEc
Confidence            34567899999999999999999776542  334566655

>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}

Probab=87.09  E-value=0.54  Score=34.84  Aligned_cols=28  Identities=25%  Similarity=0.296  Sum_probs=23.6

Q ss_pred             cCCCceEEEEeCCHHHHHHHHHhccCCC
Q 014468            8 GKEVAAAFVSFNSRYGAAIALHIQQGVN   35 (424)
Q Consensus         8 ~~~~~~aFVtF~s~~~A~~a~q~~~~~~   35 (424)
                      +++.|.|||+|++..+|..|.+.+....
T Consensus        44 g~~~g~afV~f~~~~~A~~Ai~~lng~~   71 (81)
T 2krb_A           44 GKTKGYIFLEYASPAHAVDAVKNADGYK   71 (81)
T ss_dssp             TBCCCEEEEEESSHHHHHHHHTTSSSCC
T ss_pred             CcEeEEEEEEECCHHHHHHHHHHhcCcc
Confidence            4567999999999999999998776543

>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A

Probab=87.01  E-value=0.25  Score=37.50  Aligned_cols=40  Identities=15%  Similarity=0.234  Sum_probs=31.4

Q ss_pred             CCCceEEEEeCCHHHHHHHHHhccCCC--CCcceeccCCCCC
Q 014468            9 KEVAAAFVSFNSRYGAAIALHIQQGVN--PTEWVTEQAPAPQ   48 (424)
Q Consensus         9 ~~~~~aFVtF~s~~~A~~a~q~~~~~~--~~~~~v~~AP~P~   48 (424)
                      ++.+.|||+|++.++|..|.+.+....  ...++|+.||...
T Consensus        38 ~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~~   79 (88)
T 1wg1_A           38 RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPTDA   79 (88)
T ss_dssp             GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCCCC
T ss_pred             CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcCCCc
Confidence            567899999999999999999876543  3457788887543

>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}

Probab=87.01  E-value=0.37  Score=36.08  Aligned_cols=37  Identities=30%  Similarity=0.310  Sum_probs=27.4

Q ss_pred             cCCCceEEEEeCCHHHHHHHHHhccCCC--CCcceeccC
Q 014468            8 GKEVAAAFVSFNSRYGAAIALHIQQGVN--PTEWVTEQA   44 (424)
Q Consensus         8 ~~~~~~aFVtF~s~~~A~~a~q~~~~~~--~~~~~v~~A   44 (424)
                      +++.+.|||+|++.++|..|.+.+....  ...++|+.|
T Consensus        45 ~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a   83 (87)
T 3bs9_A           45 GKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA   83 (87)
T ss_dssp             CCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred             CccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEec
Confidence            4457899999999999999999876543  234555544

>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=86.93  E-value=1  Score=34.30  Aligned_cols=39  Identities=23%  Similarity=0.216  Sum_probs=29.6

Q ss_pred             CCCceEEEEeCCHHHHHHHHHhccCCC--CCcceeccCCCC
Q 014468            9 KEVAAAFVSFNSRYGAAIALHIQQGVN--PTEWVTEQAPAP   47 (424)
Q Consensus         9 ~~~~~aFVtF~s~~~A~~a~q~~~~~~--~~~~~v~~AP~P   47 (424)
                      +.++.|||+|.+..+|..|.+.+....  ...++|+.|.+.
T Consensus        52 ~~~~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~   92 (96)
T 2e44_A           52 SETAVVNVTYSSKDQARQALDKLNGFQLENFTLKVAYIPDE   92 (96)
T ss_dssp             SSSEEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEECCCC
T ss_pred             CCCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCcc
Confidence            345559999999999999998776543  356778877654

>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1

Probab=86.82  E-value=0.89  Score=35.10  Aligned_cols=37  Identities=24%  Similarity=0.298  Sum_probs=28.1

Q ss_pred             cCCCceEEEEeCCHHHHHHHHHhccCCC--CCcceeccCC
Q 014468            8 GKEVAAAFVSFNSRYGAAIALHIQQGVN--PTEWVTEQAP   45 (424)
Q Consensus         8 ~~~~~~aFVtF~s~~~A~~a~q~~~~~~--~~~~~v~~AP   45 (424)
                      +++.+.|||+|++.++|..|.+ +....  ...++|+.|-
T Consensus        55 g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~a~   93 (101)
T 1fj7_A           55 GTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKPK   93 (101)
T ss_dssp             ETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEECCS
T ss_pred             CCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEEcC
Confidence            4567899999999999999998 65443  3456676663

>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=86.73  E-value=0.58  Score=36.36  Aligned_cols=40  Identities=18%  Similarity=0.225  Sum_probs=30.1

Q ss_pred             cCCCceEEEEeCCHHHHHHHHHhccCCC--CCcceeccCCCC
Q 014468            8 GKEVAAAFVSFNSRYGAAIALHIQQGVN--PTEWVTEQAPAP   47 (424)
Q Consensus         8 ~~~~~~aFVtF~s~~~A~~a~q~~~~~~--~~~~~v~~AP~P   47 (424)
                      +++.+.|||+|++..+|..|.+.+....  ...++|+.|-.+
T Consensus        47 g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~   88 (104)
T 1p1t_A           47 GKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAASE   88 (104)
T ss_dssp             TEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEETTCT
T ss_pred             CccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeCCCc
Confidence            3457899999999999999998876543  345677766543

>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...

Probab=86.71  E-value=0.42  Score=36.62  Aligned_cols=42  Identities=29%  Similarity=0.263  Sum_probs=31.7

Q ss_pred             CCCceEEEEeCCHHHHHHHHHhccCCC--CCcceeccCCCCCCe
Q 014468            9 KEVAAAFVSFNSRYGAAIALHIQQGVN--PTEWVTEQAPAPQDV   50 (424)
Q Consensus         9 ~~~~~aFVtF~s~~~A~~a~q~~~~~~--~~~~~v~~AP~P~DI   50 (424)
                      +..+.|||+|++.++|..|.+.+....  ...++|+.|-.+.+.
T Consensus        49 ~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~~   92 (97)
T 1nu4_A           49 KMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQYAKTDSDI   92 (97)
T ss_dssp             HHTTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSSCCTH
T ss_pred             CcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEEEEEccCCCcc
Confidence            446899999999999999999876643  345677777655543

>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=86.64  E-value=0.65  Score=36.08  Aligned_cols=38  Identities=32%  Similarity=0.286  Sum_probs=28.2

Q ss_pred             cCCCceEEEEeCCHHHHHHHHHhccCCC--CCcceeccCC
Q 014468            8 GKEVAAAFVSFNSRYGAAIALHIQQGVN--PTEWVTEQAP   45 (424)
Q Consensus         8 ~~~~~~aFVtF~s~~~A~~a~q~~~~~~--~~~~~v~~AP   45 (424)
                      .++.+.|||+|++.++|..|.+.+....  ...++|+.|-
T Consensus        54 ~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~   93 (103)
T 2cq0_A           54 GQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEWAK   93 (103)
T ss_dssp             CSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEESS
T ss_pred             CceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEECC
Confidence            3456799999999999999999876543  2345566553

>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=86.58  E-value=0.85  Score=35.50  Aligned_cols=39  Identities=10%  Similarity=0.018  Sum_probs=28.4

Q ss_pred             cCCCceEEEEeCCHHHHHHHHHhccCCC--CCcceeccCCCC
Q 014468            8 GKEVAAAFVSFNSRYGAAIALHIQQGVN--PTEWVTEQAPAP   47 (424)
Q Consensus         8 ~~~~~~aFVtF~s~~~A~~a~q~~~~~~--~~~~~v~~AP~P   47 (424)
                      .+..+.|||+|++.++|..|. .+....  ...++|+.|-++
T Consensus        54 g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~~   94 (104)
T 1wi8_A           54 ERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVDVADQA   94 (104)
T ss_dssp             TSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEEEECCCC
T ss_pred             CCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEEEEccCC
Confidence            456789999999999999999 655442  335667766443

>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}

Probab=86.52  E-value=0.89  Score=35.21  Aligned_cols=38  Identities=11%  Similarity=0.017  Sum_probs=27.9

Q ss_pred             ccCCCceEEEEeCCHHHHHHHHHhccCCC--CCcceeccCC
Q 014468            7 AGKEVAAAFVSFNSRYGAAIALHIQQGVN--PTEWVTEQAP   45 (424)
Q Consensus         7 ~~~~~~~aFVtF~s~~~A~~a~q~~~~~~--~~~~~v~~AP   45 (424)
                      .++..|.|||+|++.++|..|. .+....  ...++|+.|-
T Consensus        57 ~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V~~a~   96 (100)
T 2j76_E           57 PERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRVDVAD   96 (100)
T ss_dssp             TCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCCEECC
T ss_pred             CCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEEEecc
Confidence            4556899999999999999999 555443  2345666663

>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A

Probab=86.47  E-value=0.52  Score=37.39  Aligned_cols=38  Identities=16%  Similarity=-0.013  Sum_probs=30.2

Q ss_pred             CCCceEEEEeCCHHHHHHHHHhccCCC--CCcceeccCCC
Q 014468            9 KEVAAAFVSFNSRYGAAIALHIQQGVN--PTEWVTEQAPA   46 (424)
Q Consensus         9 ~~~~~aFVtF~s~~~A~~a~q~~~~~~--~~~~~v~~AP~   46 (424)
                      ++.|.|||+|++..+|..|.+.+....  ...++++.|++
T Consensus        54 ~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~i~v~~a~~   93 (105)
T 2pe8_A           54 DEAVRIFLEFERVESAIKAVVDLNGRYFGGRVVKACFYNL   93 (105)
T ss_dssp             TTSEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCH
T ss_pred             CCcEEEEEEECCHHHHHHHHHHHCCCEECCcEEEEEEcCH
Confidence            557899999999999999999987653  34566777753

>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=86.36  E-value=0.58  Score=35.61  Aligned_cols=37  Identities=16%  Similarity=0.067  Sum_probs=26.7

Q ss_pred             cCCCceEEEEeCCHHHHHHHHHhccCCC--CCcceeccC
Q 014468            8 GKEVAAAFVSFNSRYGAAIALHIQQGVN--PTEWVTEQA   44 (424)
Q Consensus         8 ~~~~~~aFVtF~s~~~A~~a~q~~~~~~--~~~~~v~~A   44 (424)
                      +++.+.|||+|++.++|..|.+.+....  ...++|+.|
T Consensus        55 ~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a   93 (94)
T 2e5h_A           55 RKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASIA   93 (94)
T ss_dssp             CCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEEC
T ss_pred             CCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEec
Confidence            4567899999999999999998776543  233444443

>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=86.33  E-value=0.86  Score=36.03  Aligned_cols=37  Identities=24%  Similarity=0.219  Sum_probs=27.9

Q ss_pred             cCCCceEEEEeCCHHHHHHHHHhccCCC--CCcceeccC
Q 014468            8 GKEVAAAFVSFNSRYGAAIALHIQQGVN--PTEWVTEQA   44 (424)
Q Consensus         8 ~~~~~~aFVtF~s~~~A~~a~q~~~~~~--~~~~~v~~A   44 (424)
                      .+..+.|||+|++.++|..|.+.+....  ...++|+.|
T Consensus        62 g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a  100 (113)
T 2cpe_A           62 GKPKGDATVSYEDPPTAKAAVEWFDGKDFQGSKLKVSLA  100 (113)
T ss_dssp             CSBCSEEEEEBSSHHHHHHHHHHHTTCEETTEECEEECS
T ss_pred             CCeeeEEEEEECCHHHHHHHHHHcCCCccCCCEEEEEEC
Confidence            4557899999999999999998776543  234556655

>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1

Probab=86.17  E-value=0.54  Score=34.19  Aligned_cols=36  Identities=17%  Similarity=0.180  Sum_probs=26.5

Q ss_pred             cCCCceEEEEeCCHHHHHHHHHhccCCC--CCcceeccC
Q 014468            8 GKEVAAAFVSFNSRYGAAIALHIQQGVN--PTEWVTEQA   44 (424)
Q Consensus         8 ~~~~~~aFVtF~s~~~A~~a~q~~~~~~--~~~~~v~~A   44 (424)
                      +++.|.|||+|++.++|..|.+... ..  ...++|+.|
T Consensus        39 ~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a   76 (77)
T 1uaw_A           39 KRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA   76 (77)
T ss_dssp             SSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred             CCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence            4567899999999999999998766 32  234555544

>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=86.12  E-value=1.1  Score=33.88  Aligned_cols=35  Identities=14%  Similarity=0.087  Sum_probs=26.8

Q ss_pred             CceEEEEeCCHHHHHHHHHhccCCC--CCcceeccCC
Q 014468           11 VAAAFVSFNSRYGAAIALHIQQGVN--PTEWVTEQAP   45 (424)
Q Consensus        11 ~~~aFVtF~s~~~A~~a~q~~~~~~--~~~~~v~~AP   45 (424)
                      .+.|||+|++.++|..|.+.+....  ...++|+.|-
T Consensus        42 ~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~   78 (90)
T 2dnq_A           42 KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASK   78 (90)
T ss_dssp             TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECSS
T ss_pred             CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEECC
Confidence            4799999999999999998776542  3456666653

>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}

Probab=86.08  E-value=0.7  Score=37.34  Aligned_cols=38  Identities=24%  Similarity=0.260  Sum_probs=28.5

Q ss_pred             cCCCceEEEEeCCHHHHHHHHHhccCCC--CCcceeccCC
Q 014468            8 GKEVAAAFVSFNSRYGAAIALHIQQGVN--PTEWVTEQAP   45 (424)
Q Consensus         8 ~~~~~~aFVtF~s~~~A~~a~q~~~~~~--~~~~~v~~AP   45 (424)
                      ++..+.|||+|++.++|..|.+.+....  ...++|+.|.
T Consensus        73 g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~  112 (124)
T 2kt5_A           73 GRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVA  112 (124)
T ss_dssp             SSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEEC
T ss_pred             CCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEeC
Confidence            4567899999999999999998766532  3456666554

>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=86.00  E-value=0.85  Score=35.39  Aligned_cols=37  Identities=24%  Similarity=0.188  Sum_probs=28.0

Q ss_pred             cCCCceEEEEeCCHHHHHHHHHhccCCC---CCcceeccC
Q 014468            8 GKEVAAAFVSFNSRYGAAIALHIQQGVN---PTEWVTEQA   44 (424)
Q Consensus         8 ~~~~~~aFVtF~s~~~A~~a~q~~~~~~---~~~~~v~~A   44 (424)
                      .+..+.|||+|++.++|..|.+.+....   ...++|+.|
T Consensus        48 g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~~a   87 (104)
T 2dhg_A           48 GVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSVA   87 (104)
T ss_dssp             CCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCCBC
T ss_pred             CCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEEEc
Confidence            3457899999999999999999776543   234566655

>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=85.80  E-value=0.65  Score=35.95  Aligned_cols=38  Identities=24%  Similarity=0.139  Sum_probs=28.2

Q ss_pred             cCCCceEEEEeCCHHHHHHHHHhccCCC--CCcceeccCC
Q 014468            8 GKEVAAAFVSFNSRYGAAIALHIQQGVN--PTEWVTEQAP   45 (424)
Q Consensus         8 ~~~~~~aFVtF~s~~~A~~a~q~~~~~~--~~~~~v~~AP   45 (424)
                      .+..+.|||+|++.++|..|.+.+....  ...++|+.|-
T Consensus        51 ~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~   90 (102)
T 2cqb_A           51 EKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLAK   90 (102)
T ss_dssp             CCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred             CCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEeCC
Confidence            4568899999999999999998765432  2345566553

>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1

Probab=85.77  E-value=0.58  Score=37.13  Aligned_cols=37  Identities=16%  Similarity=0.119  Sum_probs=27.9

Q ss_pred             CCCceEEEEeCCHHHHHHHHHhccCCC--CCcceeccCC
Q 014468            9 KEVAAAFVSFNSRYGAAIALHIQQGVN--PTEWVTEQAP   45 (424)
Q Consensus         9 ~~~~~aFVtF~s~~~A~~a~q~~~~~~--~~~~~v~~AP   45 (424)
                      ++.+.|||+|++.++|..|.+.+....  ...++|+.|-
T Consensus        61 ~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~a~   99 (111)
T 2cpi_A           61 GPSASAYVTYIRSEDALRAIQCVNNVVVDGRTLKASLGT   99 (111)
T ss_dssp             CCCEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEESCC
T ss_pred             CCCeEEEEEECcHHHHHHHHHHhCCCEECCEEEEEEecc
Confidence            345899999999999999999876543  3356666653

>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=85.69  E-value=0.82  Score=35.12  Aligned_cols=38  Identities=24%  Similarity=0.246  Sum_probs=27.5

Q ss_pred             cCCCceEEEEeCCHHHHHHHHHhccCCC--CCc----ceeccCC
Q 014468            8 GKEVAAAFVSFNSRYGAAIALHIQQGVN--PTE----WVTEQAP   45 (424)
Q Consensus         8 ~~~~~~aFVtF~s~~~A~~a~q~~~~~~--~~~----~~v~~AP   45 (424)
                      +++.+.|||+|++.++|..|.+.+....  ...    ++++.|-
T Consensus        49 g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~l~v~~a~   92 (99)
T 2div_A           49 GIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFKLNYAT   92 (99)
T ss_dssp             CCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEECCEEETT
T ss_pred             CCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcceeEEEeecC
Confidence            3456899999999999999999776532  122    6666553

>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A

Probab=85.67  E-value=0.96  Score=37.96  Aligned_cols=61  Identities=15%  Similarity=0.199  Sum_probs=41.6

Q ss_pred             cCCCceEEEEeCCHHHHHHHHHhccCCC--CCcceeccCC------CCCCeecCCCCCchHHHHHHHHH
Q 014468            8 GKEVAAAFVSFNSRYGAAIALHIQQGVN--PTEWVTEQAP------APQDVHWPFFSSSFMKRWICKLA   68 (424)
Q Consensus         8 ~~~~~~aFVtF~s~~~A~~a~q~~~~~~--~~~~~v~~AP------~P~DIiW~NL~~~~~~r~~R~~~   68 (424)
                      +++.+.|||+|++.++|..|.+.+....  ...++++.|.      ...-|.-.||.....+..++..+
T Consensus        42 ~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f  110 (168)
T 1b7f_A           42 GYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYARPGGESIKDTNLYVTNLPRTITDDQLDTIF  110 (168)
T ss_dssp             TEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCSSTTTTCEEEEESCCTTCCHHHHHHHH
T ss_pred             CccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecCCCcccCCCCCEEEeCCCCCCCHHHHHHhh
Confidence            3456899999999999999998766542  2334455443      33457788888776666666544

>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=85.56  E-value=0.74  Score=35.74  Aligned_cols=38  Identities=26%  Similarity=0.199  Sum_probs=28.7

Q ss_pred             cCCCceEEEEeCCHHHHHHHHHhccCCCC--CcceeccCC
Q 014468            8 GKEVAAAFVSFNSRYGAAIALHIQQGVNP--TEWVTEQAP   45 (424)
Q Consensus         8 ~~~~~~aFVtF~s~~~A~~a~q~~~~~~~--~~~~v~~AP   45 (424)
                      .+..+.|||+|++.++|..|.+.+....-  ..++|+.|-
T Consensus        52 ~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~   91 (103)
T 2dnm_A           52 KAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQVAR   91 (103)
T ss_dssp             CSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEECS
T ss_pred             CCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEECC
Confidence            45678999999999999999997765432  345666553

>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}

Probab=85.54  E-value=0.7  Score=36.24  Aligned_cols=40  Identities=18%  Similarity=0.157  Sum_probs=30.9

Q ss_pred             cCCCceEEEEeCCHHHHHHHHHhccCCC--CC-cceeccCCCC
Q 014468            8 GKEVAAAFVSFNSRYGAAIALHIQQGVN--PT-EWVTEQAPAP   47 (424)
Q Consensus         8 ~~~~~~aFVtF~s~~~A~~a~q~~~~~~--~~-~~~v~~AP~P   47 (424)
                      +++.|.|||+|.+..+|..|.+.+....  .. .++|+.|-+-
T Consensus        58 g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~l~V~~a~~~  100 (105)
T 2nlw_A           58 GKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRVNLFTDF  100 (105)
T ss_dssp             TBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCEEEEECSCCC
T ss_pred             CCeeeEEEEEECCHHHHHHHHHHhCCcccCCCceEEEEEcchH
Confidence            4567999999999999999999876542  33 5778777543

>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1

Probab=85.46  E-value=0.72  Score=35.96  Aligned_cols=37  Identities=14%  Similarity=0.109  Sum_probs=27.9

Q ss_pred             cCCCceEEEEeCCHHHHHHHHHhccCCC--CCcceeccC
Q 014468            8 GKEVAAAFVSFNSRYGAAIALHIQQGVN--PTEWVTEQA   44 (424)
Q Consensus         8 ~~~~~~aFVtF~s~~~A~~a~q~~~~~~--~~~~~v~~A   44 (424)
                      +++.+.|||+|++.++|..|.+.+....  ...++|+.|
T Consensus        62 ~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a  100 (106)
T 1p27_B           62 GYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWC  100 (106)
T ss_dssp             SSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEES
T ss_pred             CceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEee
Confidence            4457899999999999999998776543  344566554

>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A

Probab=85.45  E-value=0.73  Score=36.97  Aligned_cols=38  Identities=13%  Similarity=0.002  Sum_probs=29.3

Q ss_pred             cCCCceEEEEeCCHHHHHHHHHhccCCC--CCcceeccCC
Q 014468            8 GKEVAAAFVSFNSRYGAAIALHIQQGVN--PTEWVTEQAP   45 (424)
Q Consensus         8 ~~~~~~aFVtF~s~~~A~~a~q~~~~~~--~~~~~v~~AP   45 (424)
                      +++.|.|||+|++.++|..|.+.+....  ...++|+.|-
T Consensus        64 ~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a~  103 (111)
T 2jvr_A           64 RDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERDD  103 (111)
T ss_dssp             CSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEESC
T ss_pred             CCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECC
Confidence            4578999999999999999998876543  3456676663

>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A

Probab=85.41  E-value=0.64  Score=33.64  Aligned_cols=23  Identities=13%  Similarity=0.209  Sum_probs=20.5

Q ss_pred             cCCCceEEEEeCCHHHHHHHHHh
Q 014468            8 GKEVAAAFVSFNSRYGAAIALHI   30 (424)
Q Consensus         8 ~~~~~~aFVtF~s~~~A~~a~q~   30 (424)
                      +++.+.|||+|++.++|..|.+.
T Consensus        38 ~~~~g~afV~f~~~~~a~~Ai~~   60 (75)
T 1iqt_A           38 NKRRGFCFITFKEEEPVKKIMEK   60 (75)
T ss_dssp             SSSCCCEEEECSSSHHHHHHHTT
T ss_pred             CCcCCEEEEEECCHHHHHHHHHh
Confidence            55689999999999999999875

>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=85.24  E-value=0.54  Score=36.57  Aligned_cols=39  Identities=10%  Similarity=0.083  Sum_probs=27.2

Q ss_pred             cCCCceEEEEeCCHHHHHHHHHhccCCCCCcceeccCCC
Q 014468            8 GKEVAAAFVSFNSRYGAAIALHIQQGVNPTEWVTEQAPA   46 (424)
Q Consensus         8 ~~~~~~aFVtF~s~~~A~~a~q~~~~~~~~~~~v~~AP~   46 (424)
                      .++.+.|||+|++..+|..|.+..+.-+...++|+.|-.
T Consensus        54 g~~~g~afV~f~~~~~a~~A~~~~~~~~g~~l~v~~a~~   92 (103)
T 2cqg_A           54 GHSKGFGFVRFTEYETQVKVMSQRHMIDGRWCDCKLPNS   92 (103)
T ss_dssp             CSEEEEEEEEESSHHHHHHHHHSCEEETTEEEEEECCCT
T ss_pred             CCccceEEEEECCHHHHHHHHHcCCeeCCeEEEEEecCC
Confidence            445689999999999999999843222334566666643

>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B

Probab=85.23  E-value=0.83  Score=36.25  Aligned_cols=58  Identities=14%  Similarity=0.091  Sum_probs=38.1

Q ss_pred             ccCCCceEEEEeCCHHHHHHHHHhccCCC--CCcceeccCCCCCCeecCCCCCchHHHHHHH
Q 014468            7 AGKEVAAAFVSFNSRYGAAIALHIQQGVN--PTEWVTEQAPAPQDVHWPFFSSSFMKRWICK   66 (424)
Q Consensus         7 ~~~~~~~aFVtF~s~~~A~~a~q~~~~~~--~~~~~v~~AP~P~DIiW~NL~~~~~~r~~R~   66 (424)
                      +.+..+.|||+|.+..+|..|.+.+....  ...++|+.|-.+++-  +|+.....+..++.
T Consensus        43 ~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~~--~~~~~~~~~~~l~~  102 (115)
T 3lqv_A           43 TPETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYNANRAF--QKMDTKKKEEQLKL  102 (115)
T ss_dssp             STTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECCHHHHT--TTSCHHHHHHHHHH
T ss_pred             CCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecCChhh--hhhhHhHhHHHHHH
Confidence            34557899999999999999999876653  345667766433322  55554444444443

>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1

Probab=85.19  E-value=0.9  Score=34.98  Aligned_cols=39  Identities=18%  Similarity=0.106  Sum_probs=29.8

Q ss_pred             CCCceEEEEeCCHHHHHHHHHhccCCC--CCcceeccCCCC
Q 014468            9 KEVAAAFVSFNSRYGAAIALHIQQGVN--PTEWVTEQAPAP   47 (424)
Q Consensus         9 ~~~~~aFVtF~s~~~A~~a~q~~~~~~--~~~~~v~~AP~P   47 (424)
                      +..+.|||+|++.++|..|.+.+....  ...++|+.|-.+
T Consensus        49 ~~kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~   89 (99)
T 2cpj_A           49 KDKGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFACHS   89 (99)
T ss_dssp             TTTTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEESSCC
T ss_pred             cCCCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEcCCC
Confidence            346899999999999999998877653  345677777443

>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1

Probab=84.98  E-value=0.68  Score=35.53  Aligned_cols=36  Identities=19%  Similarity=0.170  Sum_probs=26.9

Q ss_pred             CCCceEEEEeCCHHHHHHHHHhccCCC--CCcceeccC
Q 014468            9 KEVAAAFVSFNSRYGAAIALHIQQGVN--PTEWVTEQA   44 (424)
Q Consensus         9 ~~~~~aFVtF~s~~~A~~a~q~~~~~~--~~~~~v~~A   44 (424)
                      +..+.|||+|++.++|..|.+.+....  ...++|+.|
T Consensus        48 ~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a   85 (98)
T 2cpf_A           48 LSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEVRIS   85 (98)
T ss_dssp             EEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEEECS
T ss_pred             CcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEc
Confidence            456899999999999999999876543  234555544

>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A

Probab=84.96  E-value=0.79  Score=36.40  Aligned_cols=38  Identities=16%  Similarity=0.197  Sum_probs=28.1

Q ss_pred             cCCCceEEEEeCCHHHHHHHHHhccCCC--CCcceeccCC
Q 014468            8 GKEVAAAFVSFNSRYGAAIALHIQQGVN--PTEWVTEQAP   45 (424)
Q Consensus         8 ~~~~~~aFVtF~s~~~A~~a~q~~~~~~--~~~~~v~~AP   45 (424)
                      .+..+.|||+|++.++|..|.+.+....  ...++|+.|-
T Consensus        64 g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~  103 (115)
T 2cpz_A           64 NLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLKR  103 (115)
T ss_dssp             CSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred             CCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEcC
Confidence            3456799999999999999998876543  2345666553

>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=84.95  E-value=1.2  Score=35.00  Aligned_cols=37  Identities=22%  Similarity=0.127  Sum_probs=27.8

Q ss_pred             cCCCceEEEEeCCHHHHHHHHHhccCCC--CCcceeccC
Q 014468            8 GKEVAAAFVSFNSRYGAAIALHIQQGVN--PTEWVTEQA   44 (424)
Q Consensus         8 ~~~~~~aFVtF~s~~~A~~a~q~~~~~~--~~~~~v~~A   44 (424)
                      .++.+.|||+|++.++|..|.+.+....  ...++|+.|
T Consensus        58 ~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a   96 (109)
T 1x4a_A           58 RGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFP   96 (109)
T ss_dssp             SSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred             CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEc
Confidence            3457899999999999999998776543  234556655

>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1

Probab=84.94  E-value=0.52  Score=36.06  Aligned_cols=38  Identities=24%  Similarity=0.253  Sum_probs=28.8

Q ss_pred             cCCCceEEEEeCCHHHHHHHHHhccCCC--CCcceeccCC
Q 014468            8 GKEVAAAFVSFNSRYGAAIALHIQQGVN--PTEWVTEQAP   45 (424)
Q Consensus         8 ~~~~~~aFVtF~s~~~A~~a~q~~~~~~--~~~~~v~~AP   45 (424)
                      +++.+.|||+|++..+|..|.+.+....  ...++|+.|-
T Consensus        50 ~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~   89 (96)
T 1fjc_A           50 GKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTG   89 (96)
T ss_dssp             TEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEECS
T ss_pred             CCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcC
Confidence            4457899999999999999999776432  3456777763

>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1

Probab=84.92  E-value=1.1  Score=35.05  Aligned_cols=38  Identities=18%  Similarity=0.242  Sum_probs=28.6

Q ss_pred             cCCCceEEEEeCCHHHHHHHHHhcc------CC--CCCcceeccCC
Q 014468            8 GKEVAAAFVSFNSRYGAAIALHIQQ------GV--NPTEWVTEQAP   45 (424)
Q Consensus         8 ~~~~~~aFVtF~s~~~A~~a~q~~~------~~--~~~~~~v~~AP   45 (424)
                      +++.+.|||+|.+.++|..|.+.+.      ..  +...++|+.|-
T Consensus        54 g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~~l~v~~a~   99 (111)
T 1x4h_A           54 EHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGRQLKVDLAV   99 (111)
T ss_dssp             CCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSCEEEEECCC
T ss_pred             CCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCEEEEEEECC
Confidence            4568899999999999999998876      32  23456666663

>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=84.83  E-value=1  Score=34.96  Aligned_cols=37  Identities=27%  Similarity=0.226  Sum_probs=27.9

Q ss_pred             CCceEEEEeCCHHHHHHHHHhccCCC--CCcceeccCCC
Q 014468           10 EVAAAFVSFNSRYGAAIALHIQQGVN--PTEWVTEQAPA   46 (424)
Q Consensus        10 ~~~~aFVtF~s~~~A~~a~q~~~~~~--~~~~~v~~AP~   46 (424)
                      ..+.|||+|++.++|..|.+.+....  ...++|+.|-.
T Consensus        54 ~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~   92 (103)
T 2cqi_A           54 NDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATT   92 (103)
T ss_dssp             SCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCC
T ss_pred             CCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEECCC
Confidence            46899999999999999998776542  34566766643

>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E

Probab=84.76  E-value=1.1  Score=41.47  Aligned_cols=61  Identities=16%  Similarity=0.128  Sum_probs=47.8

Q ss_pred             cCCCceEEEEeCCHHHHHHHHHhccCCC--CCcceeccCCCCCCeecCCCCCchHHHHHHHHH
Q 014468            8 GKEVAAAFVSFNSRYGAAIALHIQQGVN--PTEWVTEQAPAPQDVHWPFFSSSFMKRWICKLA   68 (424)
Q Consensus         8 ~~~~~~aFVtF~s~~~A~~a~q~~~~~~--~~~~~v~~AP~P~DIiW~NL~~~~~~r~~R~~~   68 (424)
                      .+..|.|||+|.+.++|..|.+.+....  ...+.++.+|...-|.=.||..+..+..++..+
T Consensus        54 ~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~~~~~l~v~nlp~~~t~~~l~~~f  116 (284)
T 3smz_A           54 DKYKGTAFVTLLNGEQAEAAINAFHQSRLRERELSVQLQPTDALLCVANLPPSLTQQQFEELV  116 (284)
T ss_dssp             ETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCSCEEEEESCCTTCCHHHHHHHH
T ss_pred             ecCCCEEEEEeCCHHHHHHHHHHcCCCeeCCeEEEEEecCCCCEEEEcCCCCcCCHHHHHHHH
Confidence            4567899999999999999998776543  345778888887778889998877676666544

>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A

Probab=84.76  E-value=0.69  Score=35.23  Aligned_cols=37  Identities=22%  Similarity=0.154  Sum_probs=26.9

Q ss_pred             cCCCceEEEEeCCHHHHHHHHHhccCCC--CCcceeccC
Q 014468            8 GKEVAAAFVSFNSRYGAAIALHIQQGVN--PTEWVTEQA   44 (424)
Q Consensus         8 ~~~~~~aFVtF~s~~~A~~a~q~~~~~~--~~~~~v~~A   44 (424)
                      .++.+.|||+|++.++|..|.+.+....  ...++|+.|
T Consensus        54 g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a   92 (95)
T 2ek1_A           54 GMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGP   92 (95)
T ss_dssp             SCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred             CCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEec
Confidence            3456899999999999999998776543  234455544

>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A

Probab=84.65  E-value=0.88  Score=36.07  Aligned_cols=37  Identities=30%  Similarity=0.310  Sum_probs=27.0

Q ss_pred             cCCCceEEEEeCCHHHHHHHHHhccCCC--CCcceeccC
Q 014468            8 GKEVAAAFVSFNSRYGAAIALHIQQGVN--PTEWVTEQA   44 (424)
Q Consensus         8 ~~~~~~aFVtF~s~~~A~~a~q~~~~~~--~~~~~v~~A   44 (424)
                      .+..+.|||+|++.++|..|.+.+....  ...++|+.|
T Consensus        54 ~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a   92 (115)
T 2dgo_A           54 GKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA   92 (115)
T ss_dssp             CCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred             CCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEc
Confidence            4457899999999999999998876542  234455544

>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=84.63  E-value=0.56  Score=35.69  Aligned_cols=37  Identities=19%  Similarity=0.127  Sum_probs=26.9

Q ss_pred             cCCCceEEEEeCCHHHHHHHHHhccCCCC--CcceeccC
Q 014468            8 GKEVAAAFVSFNSRYGAAIALHIQQGVNP--TEWVTEQA   44 (424)
Q Consensus         8 ~~~~~~aFVtF~s~~~A~~a~q~~~~~~~--~~~~v~~A   44 (424)
                      +++.+.|||+|++.++|..|.+.+....-  ..++|+.|
T Consensus        54 ~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a   92 (95)
T 2cqc_A           54 RRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVSGP   92 (95)
T ss_dssp             SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECC
T ss_pred             CCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEec
Confidence            34568999999999999999998765432  33455544

>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}

Probab=84.62  E-value=0.8  Score=35.17  Aligned_cols=35  Identities=14%  Similarity=0.173  Sum_probs=27.0

Q ss_pred             CceEEEEeCCHHHHHHHHHhccCCC--CCcceeccCC
Q 014468           11 VAAAFVSFNSRYGAAIALHIQQGVN--PTEWVTEQAP   45 (424)
Q Consensus        11 ~~~aFVtF~s~~~A~~a~q~~~~~~--~~~~~v~~AP   45 (424)
                      .+.|||+|++.++|..|.+.+....  ...++|+.|.
T Consensus        45 ~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~   81 (96)
T 2kvi_A           45 NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEVSS   81 (96)
T ss_dssp             TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEEEE
T ss_pred             CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEcC
Confidence            5899999999999999999876543  3456666653

>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=84.49  E-value=1  Score=34.52  Aligned_cols=37  Identities=19%  Similarity=0.191  Sum_probs=28.1

Q ss_pred             CCCceEEEEeCCHHHHHHHHHhccCCC--CCcceeccCC
Q 014468            9 KEVAAAFVSFNSRYGAAIALHIQQGVN--PTEWVTEQAP   45 (424)
Q Consensus         9 ~~~~~aFVtF~s~~~A~~a~q~~~~~~--~~~~~v~~AP   45 (424)
                      +..+.|||+|++..+|..|.+.+....  ...++|+.|-
T Consensus        47 ~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~   85 (97)
T 1x5p_A           47 PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIAR   85 (97)
T ss_dssp             TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECCS
T ss_pred             CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECC
Confidence            567899999999999999998776542  3346666663

>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*

Probab=84.24  E-value=0.96  Score=35.54  Aligned_cols=37  Identities=16%  Similarity=0.143  Sum_probs=27.7

Q ss_pred             cCCCceEEEEeCCHHHHHHHHHhccCCC--CCcceeccC
Q 014468            8 GKEVAAAFVSFNSRYGAAIALHIQQGVN--PTEWVTEQA   44 (424)
Q Consensus         8 ~~~~~~aFVtF~s~~~A~~a~q~~~~~~--~~~~~v~~A   44 (424)
                      +++.+.|||+|++..+|..|.+.+....  ...++|+.|
T Consensus        65 ~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a  103 (110)
T 1oo0_B           65 GFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWC  103 (110)
T ss_dssp             SSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred             CCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEc
Confidence            4557999999999999999998776543  234555544

>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*

Probab=84.04  E-value=1.1  Score=36.05  Aligned_cols=38  Identities=13%  Similarity=0.105  Sum_probs=28.7

Q ss_pred             ccCCCceEEEEeCCHHHHHHHHHhccCCCC--CcceeccC
Q 014468            7 AGKEVAAAFVSFNSRYGAAIALHIQQGVNP--TEWVTEQA   44 (424)
Q Consensus         7 ~~~~~~~aFVtF~s~~~A~~a~q~~~~~~~--~~~~v~~A   44 (424)
                      ..+..+.|||+|++..+|..|.+.+....-  ..+.|+.|
T Consensus        60 ~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a   99 (126)
T 3ex7_B           60 TGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWC   99 (126)
T ss_dssp             TSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEES
T ss_pred             CCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEe
Confidence            445588999999999999999988765432  34556655

>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A

Probab=84.01  E-value=0.74  Score=36.33  Aligned_cols=38  Identities=21%  Similarity=0.178  Sum_probs=28.5

Q ss_pred             CCceEEEEeCCHHHHHHHHHhccCCC--CCcceeccCCCC
Q 014468           10 EVAAAFVSFNSRYGAAIALHIQQGVN--PTEWVTEQAPAP   47 (424)
Q Consensus        10 ~~~~aFVtF~s~~~A~~a~q~~~~~~--~~~~~v~~AP~P   47 (424)
                      +.+.|||+|.+.++|..|.+.+....  ...++|+.|-+|
T Consensus        61 ~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~  100 (110)
T 1wf1_A           61 HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMAGEP  100 (110)
T ss_dssp             ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEESCCC
T ss_pred             eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCCC
Confidence            46899999999999999998776543  345667766433

>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=83.87  E-value=1.6  Score=33.80  Aligned_cols=37  Identities=22%  Similarity=0.182  Sum_probs=27.9

Q ss_pred             CCceEEEEeCCHHHHHHHHHhccCCC--CCcceeccCCC
Q 014468           10 EVAAAFVSFNSRYGAAIALHIQQGVN--PTEWVTEQAPA   46 (424)
Q Consensus        10 ~~~~aFVtF~s~~~A~~a~q~~~~~~--~~~~~v~~AP~   46 (424)
                      +.+.|||+|++.++|..|.+.+....  ...++|+.|-.
T Consensus        54 ~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~   92 (103)
T 2cq3_A           54 SKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATA   92 (103)
T ss_dssp             TCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCS
T ss_pred             CcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEccc
Confidence            57899999999999999998776542  33466666543

>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1

Probab=83.85  E-value=1.4  Score=33.78  Aligned_cols=34  Identities=18%  Similarity=0.153  Sum_probs=27.0

Q ss_pred             CceEEEEeCCHHHHHHHHHhccCCC----CCcceeccC
Q 014468           11 VAAAFVSFNSRYGAAIALHIQQGVN----PTEWVTEQA   44 (424)
Q Consensus        11 ~~~aFVtF~s~~~A~~a~q~~~~~~----~~~~~v~~A   44 (424)
                      .+.|||+|++.++|..|.+.+....    ...++|+.|
T Consensus        53 ~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~a   90 (97)
T 1why_A           53 DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDFA   90 (97)
T ss_dssp             SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEEC
T ss_pred             CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEEC
Confidence            5799999999999999999776542    345677766

>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=83.77  E-value=1.3  Score=34.66  Aligned_cols=37  Identities=24%  Similarity=0.179  Sum_probs=27.8

Q ss_pred             cCCCceEEEEeCCHHHHHHHHHhcc--CC--CCCcceeccC
Q 014468            8 GKEVAAAFVSFNSRYGAAIALHIQQ--GV--NPTEWVTEQA   44 (424)
Q Consensus         8 ~~~~~~aFVtF~s~~~A~~a~q~~~--~~--~~~~~~v~~A   44 (424)
                      +++.+.|||+|++.++|..|.+.+.  ..  +...++|+.|
T Consensus        49 g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~V~~a   89 (109)
T 2dis_A           49 MKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWA   89 (109)
T ss_dssp             TTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCEEEES
T ss_pred             CCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEEEEEc
Confidence            3568899999999999999999875  22  2345666655

>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A

Probab=83.73  E-value=0.73  Score=36.46  Aligned_cols=37  Identities=22%  Similarity=0.226  Sum_probs=28.3

Q ss_pred             CCCceEEEEeCCHHHHHHHHHhccCCC--CCcceeccCC
Q 014468            9 KEVAAAFVSFNSRYGAAIALHIQQGVN--PTEWVTEQAP   45 (424)
Q Consensus         9 ~~~~~aFVtF~s~~~A~~a~q~~~~~~--~~~~~v~~AP   45 (424)
                      +..|.|||+|++..+|..|.+.+....  ....+++.+|
T Consensus        57 ~~~G~~fV~f~~~~~A~~Ai~~lnG~~f~GR~i~v~~~~   95 (105)
T 3v4m_A           57 PGCGKIFVEFTSVFDCQKAMQGLTGRKFANRVVVTKYCD   95 (105)
T ss_dssp             TTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred             CCcEEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEeC
Confidence            457999999999999999999987653  2345555554

>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A

Probab=83.71  E-value=0.9  Score=34.01  Aligned_cols=37  Identities=11%  Similarity=0.135  Sum_probs=26.8

Q ss_pred             ccCCCceEEEEeCCHHHHHHHHHhccCCC--CCcceeccC
Q 014468            7 AGKEVAAAFVSFNSRYGAAIALHIQQGVN--PTEWVTEQA   44 (424)
Q Consensus         7 ~~~~~~~aFVtF~s~~~A~~a~q~~~~~~--~~~~~v~~A   44 (424)
                      .+++.+.|||+|++.++|..|. .+....  ...++|+.|
T Consensus        44 ~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a   82 (89)
T 3ucg_A           44 SGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPK   82 (89)
T ss_dssp             SSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEET
T ss_pred             CCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEc
Confidence            3456889999999999999998 555443  234556655

>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A

Probab=83.47  E-value=1.6  Score=35.74  Aligned_cols=37  Identities=19%  Similarity=0.143  Sum_probs=28.7

Q ss_pred             cCCCceEEEEeCCHHHHHHHHHhccCCCC--CcceeccC
Q 014468            8 GKEVAAAFVSFNSRYGAAIALHIQQGVNP--TEWVTEQA   44 (424)
Q Consensus         8 ~~~~~~aFVtF~s~~~A~~a~q~~~~~~~--~~~~v~~A   44 (424)
                      ++..+.|||+|++.++|..|.+.+....-  ..++|+.|
T Consensus        85 g~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~~a  123 (129)
T 2kxn_B           85 RRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDFS  123 (129)
T ss_dssp             SCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEESCC
T ss_pred             CccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence            45678999999999999999998765432  45666655

>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=83.41  E-value=0.7  Score=34.97  Aligned_cols=36  Identities=17%  Similarity=0.103  Sum_probs=26.5

Q ss_pred             cCCCceEEEEeCCHHHHHHHHHhccCCC--CCcceeccC
Q 014468            8 GKEVAAAFVSFNSRYGAAIALHIQQGVN--PTEWVTEQA   44 (424)
Q Consensus         8 ~~~~~~aFVtF~s~~~A~~a~q~~~~~~--~~~~~v~~A   44 (424)
                      +++.+.|||+|++.++|..|.+ +....  ...++|+.|
T Consensus        47 g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~a   84 (91)
T 2dgw_A           47 GNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFRE   84 (91)
T ss_dssp             SCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEEE
T ss_pred             CCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEEC
Confidence            4457899999999999999999 65432  234556554

>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=83.40  E-value=0.95  Score=34.76  Aligned_cols=34  Identities=15%  Similarity=0.045  Sum_probs=26.7

Q ss_pred             CceEEEEeCCHHHHHHHHHhccCCC--CCcceeccC
Q 014468           11 VAAAFVSFNSRYGAAIALHIQQGVN--PTEWVTEQA   44 (424)
Q Consensus        11 ~~~aFVtF~s~~~A~~a~q~~~~~~--~~~~~v~~A   44 (424)
                      .+.|||+|++.++|+.|.+.+....  ...++|+.|
T Consensus        52 rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V~~a   87 (96)
T 2dgx_A           52 QLKAVVQMENLQDAIGAVNSLHRYKIGSKKILVSLA   87 (96)
T ss_dssp             TCCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred             CeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEc
Confidence            6799999999999999998776542  345667666

>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A

Probab=83.24  E-value=1.6  Score=37.76  Aligned_cols=38  Identities=13%  Similarity=0.052  Sum_probs=29.6

Q ss_pred             cCCCceEEEEeCCHHHHHHHHHhccCCCC----CcceeccCC
Q 014468            8 GKEVAAAFVSFNSRYGAAIALHIQQGVNP----TEWVTEQAP   45 (424)
Q Consensus         8 ~~~~~~aFVtF~s~~~A~~a~q~~~~~~~----~~~~v~~AP   45 (424)
                      +++.+.|||+|++.++|..|.+.+....-    ..++|+.|=
T Consensus        81 k~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak  122 (164)
T 1sjr_A           81 KNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSK  122 (164)
T ss_dssp             SSSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEECS
T ss_pred             CCCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEec
Confidence            33456899999999999999999877654    456777663

>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A

Probab=83.18  E-value=0.77  Score=35.85  Aligned_cols=37  Identities=22%  Similarity=0.239  Sum_probs=27.6

Q ss_pred             cCCCceEEEEeCCHHHHHHHHHhccCCCC--CcceeccC
Q 014468            8 GKEVAAAFVSFNSRYGAAIALHIQQGVNP--TEWVTEQA   44 (424)
Q Consensus         8 ~~~~~~aFVtF~s~~~A~~a~q~~~~~~~--~~~~v~~A   44 (424)
                      ++..+.|||+|++.++|..|.+.+....-  ..++|+.|
T Consensus        67 g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a  105 (107)
T 3ulh_A           67 GRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLV  105 (107)
T ss_dssp             SCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred             CCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEe
Confidence            45578999999999999999998765532  34555554

>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=83.18  E-value=1  Score=35.73  Aligned_cols=37  Identities=22%  Similarity=0.188  Sum_probs=27.3

Q ss_pred             cCCCceEEEEeCCHHHHHHHHHhccCC-CCCcceeccC
Q 014468            8 GKEVAAAFVSFNSRYGAAIALHIQQGV-NPTEWVTEQA   44 (424)
Q Consensus         8 ~~~~~~aFVtF~s~~~A~~a~q~~~~~-~~~~~~v~~A   44 (424)
                      .+..+.|||+|++.++|..|.+.+... +...++|+.|
T Consensus        56 ~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~V~~a   93 (116)
T 2cqd_A           56 GKSRGYGFVTMADRAAAERACKDPNPIIDGRKANVNLA   93 (116)
T ss_dssp             CCCCSEEEEEESSHHHHHHHHTCSSCEETTEECEEEES
T ss_pred             CccceEEEEEECCHHHHHHHHHhCCCcCCCEEEEEEEc
Confidence            456789999999999999999876541 1234566665

>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A

Probab=83.18  E-value=1.1  Score=35.75  Aligned_cols=35  Identities=17%  Similarity=0.185  Sum_probs=26.5

Q ss_pred             CCceEEEEeCCHHHHHHHHHhccCCCC--CcceeccC
Q 014468           10 EVAAAFVSFNSRYGAAIALHIQQGVNP--TEWVTEQA   44 (424)
Q Consensus        10 ~~~~aFVtF~s~~~A~~a~q~~~~~~~--~~~~v~~A   44 (424)
                      +.+.|||+|++.++|+.|.+.+....-  ..++|+.|
T Consensus        44 ~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a   80 (115)
T 4f25_A           44 SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRF   80 (115)
T ss_dssp             EEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred             CCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence            357999999999999999988765532  34556555

>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}

Probab=83.11  E-value=0.71  Score=35.15  Aligned_cols=37  Identities=19%  Similarity=0.282  Sum_probs=27.1

Q ss_pred             cCCCceEEEEeCCHHHHHHHHHhccCCCC--CcceeccC
Q 014468            8 GKEVAAAFVSFNSRYGAAIALHIQQGVNP--TEWVTEQA   44 (424)
Q Consensus         8 ~~~~~~aFVtF~s~~~A~~a~q~~~~~~~--~~~~v~~A   44 (424)
                      .++.+.|||+|++.++|..|.+.+....-  ..++|+.|
T Consensus        54 g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a   92 (95)
T 2ywk_A           54 GKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSGP   92 (95)
T ss_dssp             SCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEECC
T ss_pred             CCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEEc
Confidence            44578999999999999999997765432  33455544

>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1

Probab=82.90  E-value=1  Score=35.72  Aligned_cols=38  Identities=21%  Similarity=0.075  Sum_probs=28.9

Q ss_pred             CCCceEEEEeCCHHHHHHHHHhccCCC--CCcceeccCCC
Q 014468            9 KEVAAAFVSFNSRYGAAIALHIQQGVN--PTEWVTEQAPA   46 (424)
Q Consensus         9 ~~~~~aFVtF~s~~~A~~a~q~~~~~~--~~~~~v~~AP~   46 (424)
                      +..+.|||+|.+..+|..|.+.+....  ...+.|+.|+.
T Consensus        44 ~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~   83 (111)
T 1whx_A           44 EGGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPI   83 (111)
T ss_dssp             SSSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEET
T ss_pred             CCCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECCC
Confidence            356789999999999999999887653  34566766653

>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X

Probab=82.81  E-value=0.89  Score=38.32  Aligned_cols=39  Identities=21%  Similarity=0.197  Sum_probs=29.2

Q ss_pred             cCCCceEEEEeCCHHHHHHHHHhccCCC--CCcceeccCCC
Q 014468            8 GKEVAAAFVSFNSRYGAAIALHIQQGVN--PTEWVTEQAPA   46 (424)
Q Consensus         8 ~~~~~~aFVtF~s~~~A~~a~q~~~~~~--~~~~~v~~AP~   46 (424)
                      .++.+.|||+|++.++|..|.+.+....  ...++|+.|..
T Consensus        78 ~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~  118 (156)
T 1h2v_Z           78 KTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWDAG  118 (156)
T ss_dssp             CCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEEESC
T ss_pred             CccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCC
Confidence            3456899999999999999999876543  34566776643

>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=82.71  E-value=1.1  Score=34.84  Aligned_cols=38  Identities=18%  Similarity=0.128  Sum_probs=27.0

Q ss_pred             cCCCceEEEEeCCHHHHHHHHHhccCCC--CCcceeccCCC
Q 014468            8 GKEVAAAFVSFNSRYGAAIALHIQQGVN--PTEWVTEQAPA   46 (424)
Q Consensus         8 ~~~~~~aFVtF~s~~~A~~a~q~~~~~~--~~~~~v~~AP~   46 (424)
                      +++.+.|||+|++.++|..|. .+....  ...++|+.|-.
T Consensus        53 g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~   92 (103)
T 2dng_A           53 DKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVDIAEG   92 (103)
T ss_dssp             CSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEEECCC
T ss_pred             CccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEEEecC
Confidence            445789999999999999999 554432  23466666643

>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A

Probab=82.44  E-value=1.1  Score=34.76  Aligned_cols=35  Identities=26%  Similarity=0.271  Sum_probs=26.2

Q ss_pred             CceEEEEeCCHHHHHHHHHhccCCC--CCcceeccCC
Q 014468           11 VAAAFVSFNSRYGAAIALHIQQGVN--PTEWVTEQAP   45 (424)
Q Consensus        11 ~~~aFVtF~s~~~A~~a~q~~~~~~--~~~~~v~~AP   45 (424)
                      .+.|||+|++.++|..|.+.+....  ...++|+.|-
T Consensus        45 ~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~   81 (103)
T 2dgu_A           45 KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAK   81 (103)
T ss_dssp             SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred             CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEcC
Confidence            4699999999999999998766542  2345666654

>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=82.23  E-value=0.94  Score=34.39  Aligned_cols=36  Identities=19%  Similarity=0.185  Sum_probs=27.8

Q ss_pred             CCceEEEEeCCHHHHHHHHHhccC-C--CCCcceeccCC
Q 014468           10 EVAAAFVSFNSRYGAAIALHIQQG-V--NPTEWVTEQAP   45 (424)
Q Consensus        10 ~~~~aFVtF~s~~~A~~a~q~~~~-~--~~~~~~v~~AP   45 (424)
                      +.+.|||+|++.++|..|.+.+.. .  +...++|+.|-
T Consensus        43 ~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~   81 (93)
T 2cqh_A           43 KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDYSV   81 (93)
T ss_dssp             ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEECC
T ss_pred             CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEEcc
Confidence            468999999999999999998776 3  23456666663

>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=81.61  E-value=1.5  Score=34.25  Aligned_cols=45  Identities=22%  Similarity=0.166  Sum_probs=30.7

Q ss_pred             ccCCCceEEEEeCCHHHHHHHHHhccCCCC--CcceeccCCCCCCeecC
Q 014468            7 AGKEVAAAFVSFNSRYGAAIALHIQQGVNP--TEWVTEQAPAPQDVHWP   53 (424)
Q Consensus         7 ~~~~~~~aFVtF~s~~~A~~a~q~~~~~~~--~~~~v~~AP~P~DIiW~   53 (424)
                      .+++.+.|||+|++.++|..|.+. ....-  ....|..| .++++.|.
T Consensus        53 ~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~~~-~~~~~~~~   99 (104)
T 1wg5_A           53 QGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIFKS-SRAEVRTS   99 (104)
T ss_dssp             SSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEEEE-CTTTSCCS
T ss_pred             CCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEEEC-CHHHHHHh
Confidence            345678999999999999999987 43322  34556555 34555443

>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}

Probab=81.60  E-value=1.5  Score=33.78  Aligned_cols=35  Identities=23%  Similarity=0.139  Sum_probs=25.8

Q ss_pred             CCceEEEEeCCHHHHHHHHHhccCCC--CCcceeccC
Q 014468           10 EVAAAFVSFNSRYGAAIALHIQQGVN--PTEWVTEQA   44 (424)
Q Consensus        10 ~~~~aFVtF~s~~~A~~a~q~~~~~~--~~~~~v~~A   44 (424)
                      +.+.|||+|++.++|..|.+.+....  ...++|+.|
T Consensus        36 ~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a   72 (101)
T 2hvz_A           36 PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELS   72 (101)
T ss_dssp             SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEES
T ss_pred             CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEc
Confidence            67899999999999999998765332  234555544

>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=81.52  E-value=1.6  Score=34.22  Aligned_cols=36  Identities=19%  Similarity=0.111  Sum_probs=27.4

Q ss_pred             CceEEEEeCCHHHHHHHHHhccCCC--CCcceeccCCC
Q 014468           11 VAAAFVSFNSRYGAAIALHIQQGVN--PTEWVTEQAPA   46 (424)
Q Consensus        11 ~~~aFVtF~s~~~A~~a~q~~~~~~--~~~~~v~~AP~   46 (424)
                      .+.|||+|++..+|..|.+.+....  ...++|+.|-.
T Consensus        61 ~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~   98 (109)
T 1x4g_A           61 KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKE   98 (109)
T ss_dssp             TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCCC
T ss_pred             CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEecCC
Confidence            6899999999999999998876543  23456666643

>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}

Probab=81.31  E-value=1.3  Score=34.18  Aligned_cols=36  Identities=14%  Similarity=0.174  Sum_probs=26.4

Q ss_pred             CCCceEEEEeCCHHHHHHHHHhccCCCC--CcceeccC
Q 014468            9 KEVAAAFVSFNSRYGAAIALHIQQGVNP--TEWVTEQA   44 (424)
Q Consensus         9 ~~~~~aFVtF~s~~~A~~a~q~~~~~~~--~~~~v~~A   44 (424)
                      +..+.|||+|++.++|..|...+....-  ..++|+.|
T Consensus        61 ~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a   98 (101)
T 2la4_A           61 PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWG   98 (101)
T ss_dssp             TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBC
T ss_pred             cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEec
Confidence            4578999999999999999987765432  33444444

>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=81.22  E-value=1.8  Score=34.16  Aligned_cols=27  Identities=15%  Similarity=0.195  Sum_probs=22.5

Q ss_pred             cCCCceEEEEeCCHHHHHHHHHhccCC
Q 014468            8 GKEVAAAFVSFNSRYGAAIALHIQQGV   34 (424)
Q Consensus         8 ~~~~~~aFVtF~s~~~A~~a~q~~~~~   34 (424)
                      .+..+.|||+|++..+|..|.+.+...
T Consensus        63 g~~~g~afV~f~~~~~a~~A~~~l~g~   89 (114)
T 1x5o_A           63 GTSRGVGFARMESTEKCEAVIGHFNGK   89 (114)
T ss_dssp             SCEEEEEEEEESCHHHHHHHHHHHBTC
T ss_pred             CCcceEEEEEECCHHHHHHHHHHhCCC
Confidence            345679999999999999999977654

>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A

Probab=81.15  E-value=1.7  Score=36.66  Aligned_cols=60  Identities=15%  Similarity=0.128  Sum_probs=40.1

Q ss_pred             CCCceEEEEeCCHHHHHHHHHhccCCC-----CCcceeccCC-------CCCCeecCCCCCchHHHHHHHHH
Q 014468            9 KEVAAAFVSFNSRYGAAIALHIQQGVN-----PTEWVTEQAP-------APQDVHWPFFSSSFMKRWICKLA   68 (424)
Q Consensus         9 ~~~~~aFVtF~s~~~A~~a~q~~~~~~-----~~~~~v~~AP-------~P~DIiW~NL~~~~~~r~~R~~~   68 (424)
                      +..+.|||+|.+.++|..|.+.+....     .....+..+.       +...|.=.||..+..+..++..+
T Consensus        45 ~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~F  116 (175)
T 3nmr_A           45 QSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQMKPADSEKNNAVEDRKLFIGMISKKCTENDIRVMF  116 (175)
T ss_dssp             EEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEEEECGGGCCSCGGGSEEEEESCCTTCCHHHHHHHH
T ss_pred             CcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceEEccccccccccCCCCeEEEcCCCCcCCHHHHHHHH
Confidence            457899999999999999998765432     2233333332       33447777887776666666643

>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=81.13  E-value=1.2  Score=33.04  Aligned_cols=27  Identities=26%  Similarity=0.252  Sum_probs=22.7

Q ss_pred             cCCCceEEEEeCCHHHHHHHHHhccCC
Q 014468            8 GKEVAAAFVSFNSRYGAAIALHIQQGV   34 (424)
Q Consensus         8 ~~~~~~aFVtF~s~~~A~~a~q~~~~~   34 (424)
                      +++.+.|||+|++.++|..|.+.+...
T Consensus        44 ~~~~g~afV~f~~~~~a~~A~~~l~g~   70 (85)
T 1x4e_A           44 NKCKGYGFVDFDSPSAAQKAVTALKAS   70 (85)
T ss_dssp             CSCCSEEEEEESCHHHHHHHHHHHHHH
T ss_pred             CCcCcEEEEEECCHHHHHHHHHHhcCC
Confidence            455789999999999999999876544

>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}

Probab=81.07  E-value=1.5  Score=34.33  Aligned_cols=25  Identities=24%  Similarity=0.347  Sum_probs=21.5

Q ss_pred             cCCCceEEEEeCCHHHHHHHHHhccC
Q 014468            8 GKEVAAAFVSFNSRYGAAIALHIQQG   33 (424)
Q Consensus         8 ~~~~~~aFVtF~s~~~A~~a~q~~~~   33 (424)
                      +++.|.|||+|++..+|..|.+ +..
T Consensus        52 g~~~G~afV~F~~~~~a~~Al~-~~~   76 (107)
T 2lmi_A           52 GKRRGDALIEMESEQDVQKALE-KHR   76 (107)
T ss_dssp             STTCSEEEEEBSSHHHHHHHHT-TTT
T ss_pred             CCEeeEEEEEECCHHHHHHHHH-hCc
Confidence            5678899999999999999998 543

>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A

Probab=80.58  E-value=1.9  Score=35.57  Aligned_cols=38  Identities=24%  Similarity=0.253  Sum_probs=28.6

Q ss_pred             ccCCCceEEEEeCCHHHHHHHHHhccCCCC--CcceeccC
Q 014468            7 AGKEVAAAFVSFNSRYGAAIALHIQQGVNP--TEWVTEQA   44 (424)
Q Consensus         7 ~~~~~~~aFVtF~s~~~A~~a~q~~~~~~~--~~~~v~~A   44 (424)
                      ..+..+.|||+|++.++|..|.+.+....-  ..++|+.|
T Consensus        85 ~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a  124 (135)
T 2lea_A           85 TKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMA  124 (135)
T ss_dssp             SSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEEC
T ss_pred             CCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence            345678999999999999999987765432  35566655

>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=80.21  E-value=1.2  Score=35.18  Aligned_cols=36  Identities=19%  Similarity=0.154  Sum_probs=27.5

Q ss_pred             CCCceEEEEeCCHHHHHHHHHhccCCC--CCcceeccC
Q 014468            9 KEVAAAFVSFNSRYGAAIALHIQQGVN--PTEWVTEQA   44 (424)
Q Consensus         9 ~~~~~aFVtF~s~~~A~~a~q~~~~~~--~~~~~v~~A   44 (424)
                      +..+.|||+|++.++|..|.+.+....  ...++|+.|
T Consensus        67 ~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a  104 (109)
T 2err_A           67 GSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNA  104 (109)
T ss_dssp             BCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred             CCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence            357899999999999999998776543  334556655

>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}

Probab=80.05  E-value=1.2  Score=35.47  Aligned_cols=27  Identities=26%  Similarity=0.391  Sum_probs=23.2

Q ss_pred             cCCCceEEEEeCCHHHHHHHHHhccCC
Q 014468            8 GKEVAAAFVSFNSRYGAAIALHIQQGV   34 (424)
Q Consensus         8 ~~~~~~aFVtF~s~~~A~~a~q~~~~~   34 (424)
                      ++..+.|||+|++.++|..|.+.+...
T Consensus        79 g~~~g~afV~f~~~~~A~~A~~~l~g~  105 (118)
T 2khc_A           79 SLSKCFGFVSFDNPDSAQVAIKAMNGF  105 (118)
T ss_dssp             SCCCCEEEEEEESSHHHHHHHHHCCCC
T ss_pred             CCcCcEEEEEECCHHHHHHHHHHcCCC
Confidence            456789999999999999999987654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	424
d1x5sa1	90	Cold-inducible RNA-binding protein {Human (Homo sa	93.86
d1wi6a1	75	Ribonucleoprotein PTB-binding 1, Raver-1 {Mouse (M	93.83
d1x5ua1	93	Splicing factor 3B subunit 4 {Human (Homo sapiens)	93.35
d1b7fa2	85	Sex-lethal protein {Drosophila melanogaster [TaxId	92.91
d1no8a_	78	Nuclear factor Aly {Mouse (Mus musculus) [TaxId: 1	92.43
d2disa1	96	Hypothetical protein FLJ20273 {Human (Homo sapiens	92.15
d2cpja1	86	Non-POU domain-containing octamer-binding protein,	92.11
d2bz2a1	79	Negative elongation factor E, NELF-E {Human (Homo	92.05
d1wf2a_	98	Heterogeneous nuclear ribonucleoproteins C1/C2 {Hu	91.94
d2cqpa1	86	RNA-binding protein 12 {Mouse (Mus musculus) [TaxI	91.41
d1b7fa1	82	Sex-lethal protein {Drosophila melanogaster [TaxId	91.36
d2msta_	75	Neural RNA-binding protein Musashi-1 {Mouse (Mus m	91.36
d1h2vz_	93	CBP20, 20KDa nuclear cap-binding protein {Human (H	91.34
d2ghpa1	81	U4/U6 snRNA-associated-splicing factor PRP24 {Bake	91.01
d1cvja1	80	Poly(A)-binding protein {Human (Homo sapiens) [Tax	90.92
d2ghpa3	86	U4/U6 snRNA-associated-splicing factor PRP24 {Bake	90.89
d2u2fa_	85	Splicing factor U2AF 65 KDa subunit {Human (Homo s	90.75
d1hd0a_	75	Heterogeneous nuclear ribonucleoprotein d0 {Human	90.7
d2cq0a1	90	Eukaryotic translation initiation factor 3 subunit	90.4
d1fxla2	85	Hu antigen D (Hud) {Human (Homo sapiens) [TaxId: 9	90.14
d1whwa_	99	Probable RNA-binding protein 19, Rbm19 {Mouse (Mus	90.07
d1wg1a_	88	Probable RNA-binding protein KIAA1579 {Human (Homo	90.07
d2cpza1	102	CUG triplet repeat RNA-binding protein 1 {Human (H	89.99
d2cpfa1	85	Probable RNA-binding protein 19, Rbm19 {Mouse (Mus	89.98
d1x5ta1	83	Splicing factor 3B subunit 4 {Human (Homo sapiens)	89.81
d2cpea1	101	RNA-binding protein EWS {Human (Homo sapiens) [Tax	89.62
d2cpha1	94	Probable RNA-binding protein 19, Rbm19 {Mouse (Mus	88.97
d2cqba1	89	Peptidyl-prolyl cis-trans isomerase E, N-terminal	88.94
U2AF35 (35 KDa subunit) {Human (Homo sapiens) [TaxId: 9606]}" target="_blank" href="http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?sid=d1jmta_">d1jmta_	104	U2	88.67
d1x4ha1	98	RNA-binding protein 28 {Mouse (Mus musculus) [TaxI	88.53
d1fxla1	82	Hu antigen D (Hud) {Human (Homo sapiens) [TaxId: 9	88.38
d1x4fa1	99	Matrin 3 {Mouse (Mus musculus) [TaxId: 10090]}	88.26
d2adca1	109	Polypyrimidine tract-binding protein {Human (Homo	88.09
d1rk8a_	88	RNA-binding protein 8 {Fruit fly (Drosophila melan	87.99
d1uawa_	77	Musashi-1 {Mouse (Mus musculus) [TaxId: 10090]}	87.87
d1nu4a_	91	Splicesomal U1A protein {Human (Homo sapiens) [Tax	87.43
d1weya_	104	Calcipressin-1 {Mouse (Mus musculus) [TaxId: 10090	87.34
d1whxa_	111	Probable RNA-binding protein 19, Rbm19 {Mouse (Mus	87.34
d1x4ea1	72	RNA-binding motif, single-stranded-interacting pro	87.29
d1cvja2	89	Poly(A)-binding protein {Human (Homo sapiens) [Tax	87.29
d1p1ta_	104	Cleavage stimulation factor, 64 kda subunit {Human	87.27
d1x4ga1	96	Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 960	87.27
d1x4aa1	95	Splicing factor, arginine/serine-rich 1, SFRS1 {Hu	87.26
d2cqga1	90	TAR DNA-binding protein 43, TDP-43 {Human (Homo sa	87.17
d1l3ka1	84	Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human	87.02
d2adca2	88	Polypyrimidine tract-binding protein {Human (Homo	86.85
d2cpxa1	102	RNA-binding protein 41, RBM41 {Human (Homo sapiens	86.18
d1x0fa1	75	Nuclear ribonucleoprotein D0 (AUF1) {Human (Homo s	86.05
d2cq3a1	93	RNA-binding protein 9 {Human (Homo sapiens) [TaxId	85.85
d2cpda1	86	APOBEC1 stimulating protein {Human (Homo sapiens)	85.49
d2cqia1	90	Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 960	85.46
d1wi8a_	104	Eukaryotic translation initiation factor 4B {Human	85.42
d2f9da1	114	Pre-mRNA branch site protein p14 {Human (Homo sapi	85.41
d1wf0a_	88	TAR DNA-binding protein 43, TDP-43 {Human (Homo sa	85.27
d2cqha1	80	IGF-II mRNA-binding protein 2 isoform A {Human (Ho	85.17
d2b0ga1	83	Splicesomal U1A protein {Drosophila melanogaster [	84.76
d2adba1	108	Polypyrimidine tract-binding protein {Human (Homo	83.73
d2cpia1	89	E3 ubiquitin protein ligase CNOT4 {Mouse (Mus musc	83.46
d2dita1	99	HIV Tat-specific factor 1 {Human (Homo sapiens) [T	83.4
d2cqda1	103	RNA-binding region containing protein 1 {Human (Ho	82.39
d1fjeb1	91	Nucleolin {Golden hamster (Mesocricetus auratus) [	82.23
d3begb1	87	Splicing factor, arginine/serine-rich 1, SFRS1 {Hu	81.43
d2cqca1	83	Arginine/serine-rich splicing factor 10 {Human (Ho	80.86
d1x5oa1	101	RNA-binding motif, single-stranded-interacting pro	80.62
d1u6fa1	139	RNA-binding protein UBP1 {Trypanosoma cruzi [TaxId	80.04

>d1x5sa1 d.58.7.1 (A:8-97) Cold-inducible RNA-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Cold-inducible RNA-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.86  E-value=0.03  Score=41.29  Aligned_cols=44  Identities=20%  Similarity=0.199  Sum_probs=34.0

Q ss_pred             cccCCCceEEEEeCCHHHHHHHHHhccCCC--CCcceeccCCCCCC
Q 014468            6 LAGKEVAAAFVSFNSRYGAAIALHIQQGVN--PTEWVTEQAPAPQD   49 (424)
Q Consensus         6 ~~~~~~~~aFVtF~s~~~A~~a~q~~~~~~--~~~~~v~~AP~P~D   49 (424)
                      ..+++.|.|||+|.+.++|..|.+.+....  ...++|+.|..+.|
T Consensus        42 ~~~~~~g~afV~f~~~~~a~~Ai~~l~~~~~~g~~l~V~~a~~~~~   87 (90)
T d1x5sa1          42 ETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQAGKSSD   87 (90)
T ss_dssp             SSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEEEECCCC
T ss_pred             ccccccceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEcCCCCC
Confidence            345568899999999999999998876553  35677888876654

>d1wi6a1 d.58.7.1 (A:69-143) Ribonucleoprotein PTB-binding 1, Raver-1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Ribonucleoprotein PTB-binding 1, Raver-1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.83  E-value=0.03  Score=40.00  Aligned_cols=40  Identities=20%  Similarity=0.189  Sum_probs=32.6

Q ss_pred             cCCCceEEEEeCCHHHHHHHHHhccCCC--CCcceeccCCCC
Q 014468            8 GKEVAAAFVSFNSRYGAAIALHIQQGVN--PTEWVTEQAPAP   47 (424)
Q Consensus         8 ~~~~~~aFVtF~s~~~A~~a~q~~~~~~--~~~~~v~~AP~P   47 (424)
                      .+..+.|||+|++..+|..|.+.+....  ...++|+.||..
T Consensus        30 ~~~~g~afv~f~~~~~A~~Ai~~ln~~~~~g~~l~V~~a~~d   71 (75)
T d1wi6a1          30 DKYKGTAFVTLLNGEQAEAAINTFHQSRLRERELSVQLQPTD   71 (75)
T ss_dssp             ETTTTEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEECCST
T ss_pred             cccceeEEEEECCHHHHHHHHHHhCCccCCCCEEEEEEeCCC
Confidence            4678999999999999999999887643  356788888653

>d1x5ua1 d.58.7.1 (A:7-99) Splicing factor 3B subunit 4 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor 3B subunit 4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.35  E-value=0.064  Score=39.83  Aligned_cols=42  Identities=21%  Similarity=0.265  Sum_probs=31.8

Q ss_pred             cCCCceEEEEeCCHHHHHHHHHhccCCC--CCcceeccC-CCCCC
Q 014468            8 GKEVAAAFVSFNSRYGAAIALHIQQGVN--PTEWVTEQA-PAPQD   49 (424)
Q Consensus         8 ~~~~~~aFVtF~s~~~A~~a~q~~~~~~--~~~~~v~~A-P~P~D   49 (424)
                      +++.+.|||+|.+.++|..|.+.+....  ...++|+.| |+.+|
T Consensus        48 g~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~A~~~~~n   92 (93)
T d1x5ua1          48 GQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNKASAHNKN   92 (93)
T ss_dssp             CSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEEETTTTSCC
T ss_pred             cccccceEEEECCHHHHHHHHHHcCCCEECCEEEEEEEcCCCCCC
Confidence            4567899999999999999999887653  346778766 44443

>d1b7fa2 d.58.7.1 (A:205-289) Sex-lethal protein {Drosophila melanogaster [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Sex-lethal protein
species: Drosophila melanogaster [TaxId: 7227]

Probab=92.91  E-value=0.044  Score=39.91  Aligned_cols=38  Identities=29%  Similarity=0.363  Sum_probs=28.9

Q ss_pred             ccCCCceEEEEeCCHHHHHHHHHhccCCCC----CcceeccC
Q 014468            7 AGKEVAAAFVSFNSRYGAAIALHIQQGVNP----TEWVTEQA   44 (424)
Q Consensus         7 ~~~~~~~aFVtF~s~~~A~~a~q~~~~~~~----~~~~v~~A   44 (424)
                      .+++.+.|||+|.+.++|..|.+.++....    ..++|+.|
T Consensus        44 ~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~~~l~V~~A   85 (85)
T d1b7fa2          44 TGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSVRLA   85 (85)
T ss_dssp             TCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred             cccCceeEEEEECCHHHHHHHHHHHCCCEeCCCCeEEEEEEC
Confidence            345678999999999999999998876543    23566554

>d1no8a_ d.58.7.1 (A:) Nuclear factor Aly {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nuclear factor Aly
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.43  E-value=0.053  Score=38.82  Aligned_cols=39  Identities=21%  Similarity=0.243  Sum_probs=29.2

Q ss_pred             ccCCCceEEEEeCCHHHHHHHHHhccCCC--CCcceeccCC
Q 014468            7 AGKEVAAAFVSFNSRYGAAIALHIQQGVN--PTEWVTEQAP   45 (424)
Q Consensus         7 ~~~~~~~aFVtF~s~~~A~~a~q~~~~~~--~~~~~v~~AP   45 (424)
                      .+++.+.|||+|++.++|..|.+.++...  ...++|+.|.
T Consensus        37 ~g~~~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~l~V~~a~   77 (78)
T d1no8a_          37 SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLVT   77 (78)
T ss_dssp             CCCSCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred             ccccceeEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEee
Confidence            45567899999999999999999877543  2345566553

>d2disa1 d.58.7.1 (A:8-103) Hypothetical protein FLJ20273 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Hypothetical protein FLJ20273
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.15  E-value=0.085  Score=39.26  Aligned_cols=37  Identities=24%  Similarity=0.152  Sum_probs=28.1

Q ss_pred             cCCCceEEEEeCCHHHHHHHHHhccCCC----CCcceeccC
Q 014468            8 GKEVAAAFVSFNSRYGAAIALHIQQGVN----PTEWVTEQA   44 (424)
Q Consensus         8 ~~~~~~aFVtF~s~~~A~~a~q~~~~~~----~~~~~v~~A   44 (424)
                      +++.|.|||+|.+..+|..|.+.+....    ...++|+.|
T Consensus        42 ~~~rg~aFV~F~~~~~A~~Ai~~l~~~~~~~~g~~i~V~~A   82 (96)
T d2disa1          42 MKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWA   82 (96)
T ss_dssp             TTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCEEEES
T ss_pred             ccCCCeEEEEEcCHHHHHHHHHHHcCCCeEECCEEEEEEEc
Confidence            4567899999999999999999876433    234666655

>d2cpja1 d.58.7.1 (A:65-150) Non-POU domain-containing octamer-binding protein, NonO {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Non-POU domain-containing octamer-binding protein, NonO
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.11  E-value=0.071  Score=38.94  Aligned_cols=41  Identities=17%  Similarity=0.104  Sum_probs=33.1

Q ss_pred             CCCceEEEEeCCHHHHHHHHHhccCCC--CCcceeccCCCCCC
Q 014468            9 KEVAAAFVSFNSRYGAAIALHIQQGVN--PTEWVTEQAPAPQD   49 (424)
Q Consensus         9 ~~~~~aFVtF~s~~~A~~a~q~~~~~~--~~~~~v~~AP~P~D   49 (424)
                      +..+.|||+|++..+|..|.+.++...  ...++|+.|+++..
T Consensus        42 ~~k~~afV~f~~~~~A~~A~~~l~g~~i~g~~l~V~~A~~~~~   84 (86)
T d2cpja1          42 KDKGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFACHSAS   84 (86)
T ss_dssp             TTTTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEESSCCSC
T ss_pred             cccceEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECCCcCC
Confidence            446899999999999999999887654  34678889987764

>d2bz2a1 d.58.7.1 (A:35-113) Negative elongation factor E, NELF-E {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Negative elongation factor E, NELF-E
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.05  E-value=0.096  Score=37.46  Aligned_cols=37  Identities=19%  Similarity=0.200  Sum_probs=29.2

Q ss_pred             cCCCceEEEEeCCHHHHHHHHHhccCCC--CCcceeccC
Q 014468            8 GKEVAAAFVSFNSRYGAAIALHIQQGVN--PTEWVTEQA   44 (424)
Q Consensus         8 ~~~~~~aFVtF~s~~~A~~a~q~~~~~~--~~~~~v~~A   44 (424)
                      .++.+.|||+|++.++|..|.+.+....  ...++|+.|
T Consensus        36 ~~~~~~afV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a   74 (79)
T d2bz2a1          36 DPPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIA   74 (79)
T ss_dssp             ETTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEEC
T ss_pred             ccCCCEEEEEEcccHHHHHHHHHhCCCEECCEEEEEEEe
Confidence            3567899999999999999998876543  346777766

>d1wf2a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoproteins C1/C2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Heterogeneous nuclear ribonucleoproteins C1/C2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.94  E-value=0.07  Score=40.09  Aligned_cols=39  Identities=21%  Similarity=0.181  Sum_probs=30.5

Q ss_pred             CCceEEEEeCCHHHHHHHHHhccCCC--CCcceeccCCCCC
Q 014468           10 EVAAAFVSFNSRYGAAIALHIQQGVN--PTEWVTEQAPAPQ   48 (424)
Q Consensus        10 ~~~~aFVtF~s~~~A~~a~q~~~~~~--~~~~~v~~AP~P~   48 (424)
                      +.++|||+|++.++|..|.+.+....  ...++|+.|.+|+
T Consensus        49 ~rg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~~~~   89 (98)
T d1wf2a_          49 HKGFAFVQYVNERNARAAVAGEDGRMIAGQVLDINLAAEPK   89 (98)
T ss_dssp             ETEEEEEEESSHHHHHHHHHTTTTCEETTEECEEEETTSCC
T ss_pred             eCCeEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCC
Confidence            35899999999999999999887653  3457788775543

>d2cqpa1 d.58.7.1 (A:917-1002) RNA-binding protein 12 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 12
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.41  E-value=0.066  Score=38.92  Aligned_cols=37  Identities=22%  Similarity=0.089  Sum_probs=27.7

Q ss_pred             ccCCCceEEEEeCCHHHHHHHHHhccCCCCC--cceecc
Q 014468            7 AGKEVAAAFVSFNSRYGAAIALHIQQGVNPT--EWVTEQ   43 (424)
Q Consensus         7 ~~~~~~~aFVtF~s~~~A~~a~q~~~~~~~~--~~~v~~   43 (424)
                      ..++.+.|||.|+++++|..|.+.++...-.  ..+|++
T Consensus        47 ~g~~~G~afV~f~~~e~a~~Ai~~l~~~~l~gr~i~v~l   85 (86)
T d2cqpa1          47 KGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVL   85 (86)
T ss_dssp             SSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred             CCCcceEEEEEEcCcHHHHHHHHHcCCCEECCEEEEEEE
Confidence            3456889999999999999999988765432  344444

>d1b7fa1 d.58.7.1 (A:123-204) Sex-lethal protein {Drosophila melanogaster [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Sex-lethal protein
species: Drosophila melanogaster [TaxId: 7227]

Probab=91.36  E-value=0.079  Score=38.07  Aligned_cols=38  Identities=24%  Similarity=0.336  Sum_probs=29.6

Q ss_pred             cCCCceEEEEeCCHHHHHHHHHhccCCCC--CcceeccCC
Q 014468            8 GKEVAAAFVSFNSRYGAAIALHIQQGVNP--TEWVTEQAP   45 (424)
Q Consensus         8 ~~~~~~aFVtF~s~~~A~~a~q~~~~~~~--~~~~v~~AP   45 (424)
                      +++.+.|||+|.+.++|..|.+.+....-  ..++|+.|.
T Consensus        41 g~~~g~afV~f~~~~~A~~ai~~lng~~~~g~~l~v~~a~   80 (82)
T d1b7fa1          41 GYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR   80 (82)
T ss_dssp             TEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred             CCccccceEEECCHHHHHHHHHHhCCCEECCEEEEEEEcC
Confidence            45578999999999999999998876532  356677663

>d2msta_ d.58.7.1 (A:) Neural RNA-binding protein Musashi-1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Neural RNA-binding protein Musashi-1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.36  E-value=0.12  Score=36.33  Aligned_cols=37  Identities=14%  Similarity=0.031  Sum_probs=26.5

Q ss_pred             ccCCCceEEEEeCCHHHHHHHHHhccCCC--CCcceeccC
Q 014468            7 AGKEVAAAFVSFNSRYGAAIALHIQQGVN--PTEWVTEQA   44 (424)
Q Consensus         7 ~~~~~~~aFVtF~s~~~A~~a~q~~~~~~--~~~~~v~~A   44 (424)
                      .+++.+.|||+|++.++|+.|.+ +..+.  ...++|+.|
T Consensus        37 ~~~~~~~afV~F~~~~~a~~al~-~~~~~l~gr~i~V~~A   75 (75)
T d2msta_          37 TNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA   75 (75)
T ss_dssp             CTTSCCEEEEECSCHHHHHHHHH-CSSCCBTTBCCEEEEC
T ss_pred             ccccCceeEEEECCHHHHHHHHh-cCCCEECCeEEEEEEC
Confidence            35678899999999999999986 44332  234556554

>d1h2vz_ d.58.7.1 (Z:) CBP20, 20KDa nuclear cap-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: CBP20, 20KDa nuclear cap-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.34  E-value=0.071  Score=39.54  Aligned_cols=41  Identities=20%  Similarity=0.169  Sum_probs=30.7

Q ss_pred             cCCCceEEEEeCCHHHHHHHHHhccCCC--CCcceeccCCCCC
Q 014468            8 GKEVAAAFVSFNSRYGAAIALHIQQGVN--PTEWVTEQAPAPQ   48 (424)
Q Consensus         8 ~~~~~~aFVtF~s~~~A~~a~q~~~~~~--~~~~~v~~AP~P~   48 (424)
                      +++.|.|||+|++..+|..|.+.+....  ...++|+.|+.+.
T Consensus        46 ~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~gr~i~V~~a~~~~   88 (93)
T d1h2vz_          46 KTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWDAGFK   88 (93)
T ss_dssp             CCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEEESCCC
T ss_pred             ccccceEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEcCCCC
Confidence            3445789999999999999999886553  2356777776543

>d2ghpa1 d.58.7.1 (A:116-196) U4/U6 snRNA-associated-splicing factor PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: U4/U6 snRNA-associated-splicing factor PRP24
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.01  E-value=0.087  Score=37.77  Aligned_cols=38  Identities=16%  Similarity=0.177  Sum_probs=26.9

Q ss_pred             ccCCCceEEEEeCCHHHHHHHHHhccCCC--CCcceeccC
Q 014468            7 AGKEVAAAFVSFNSRYGAAIALHIQQGVN--PTEWVTEQA   44 (424)
Q Consensus         7 ~~~~~~~aFVtF~s~~~A~~a~q~~~~~~--~~~~~v~~A   44 (424)
                      .+++.+.|||+|.+.++|+.|.+.++...  ...++|+.|
T Consensus        39 ~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g~~i~V~~a   78 (81)
T d2ghpa1          39 FNTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVS   78 (81)
T ss_dssp             ----CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred             cccccceeEEEECCHHHHHHHHHHhCCCEECCEEEEEEEc
Confidence            45678899999999999999999887653  234556555

>d1cvja1 d.58.7.1 (A:11-90) Poly(A)-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Poly(A)-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.92  E-value=0.052  Score=39.04  Aligned_cols=37  Identities=16%  Similarity=0.025  Sum_probs=28.0

Q ss_pred             cCCCceEEEEeCCHHHHHHHHHhccCCCCC--cceeccC
Q 014468            8 GKEVAAAFVSFNSRYGAAIALHIQQGVNPT--EWVTEQA   44 (424)
Q Consensus         8 ~~~~~~aFVtF~s~~~A~~a~q~~~~~~~~--~~~v~~A   44 (424)
                      +++.+.|||+|++.++|..|.+.+....-.  .++|+.|
T Consensus        39 g~~~g~aFV~f~~~~~a~~ai~~l~g~~~~gr~i~v~~a   77 (80)
T d1cvja1          39 RRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWS   77 (80)
T ss_dssp             CCEEEEEEEEESSHHHHHHHHTTSTTCEETTEECEEEEC
T ss_pred             cCCCCceEEEECCHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence            456789999999999999999887765432  3555554

>d2ghpa3 d.58.7.1 (A:206-291) U4/U6 snRNA-associated-splicing factor PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: U4/U6 snRNA-associated-splicing factor PRP24
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.89  E-value=0.076  Score=38.73  Aligned_cols=37  Identities=22%  Similarity=0.165  Sum_probs=25.6

Q ss_pred             ccCCCceEEEEeCCHHHHHHHHHhccCCC--CCcceeccC
Q 014468            7 AGKEVAAAFVSFNSRYGAAIALHIQQGVN--PTEWVTEQA   44 (424)
Q Consensus         7 ~~~~~~~aFVtF~s~~~A~~a~q~~~~~~--~~~~~v~~A   44 (424)
                      .+++.|.|||+|.+.++|..|.+ +....  ...++|+.|
T Consensus        44 ~~~~kg~afV~f~~~~~a~~Al~-~n~~~~~gr~l~V~~a   82 (86)
T d2ghpa3          44 HSFNNCCAFMVFENKDSAERALQ-MNRSLLGNREISVSLA   82 (86)
T ss_dssp             --CCCEEEEEEESSHHHHHHHGG-GTTEEETTEEEEEEEC
T ss_pred             ccccceeeeEEECCHHHHHHHHh-cCCCEECCEEEEEEEc
Confidence            34567799999999999999986 43332  235667665

>d2u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor U2AF 65 KDa subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.75  E-value=0.16  Score=36.83  Aligned_cols=38  Identities=16%  Similarity=0.188  Sum_probs=30.6

Q ss_pred             cCCCceEEEEeCCHHHHHHHHHhccCCC--CCcceeccCC
Q 014468            8 GKEVAAAFVSFNSRYGAAIALHIQQGVN--PTEWVTEQAP   45 (424)
Q Consensus         8 ~~~~~~aFVtF~s~~~A~~a~q~~~~~~--~~~~~v~~AP   45 (424)
                      +++.+.|||+|.+.++|..|.+.+....  ...+.|+.|.
T Consensus        40 g~~rg~aFV~f~~~~~A~~a~~~l~~~~l~g~~l~V~~A~   79 (85)
T d2u2fa_          40 GLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRAS   79 (85)
T ss_dssp             SCCCCEEEEEESSSHHHHHHHHTSSSCCCSSSCCEEEECC
T ss_pred             cccceeEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECC
Confidence            5668999999999999999999876653  3457777775

>d1hd0a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein d0 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Heterogeneous nuclear ribonucleoprotein d0
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.70  E-value=0.15  Score=35.96  Aligned_cols=37  Identities=16%  Similarity=0.183  Sum_probs=25.7

Q ss_pred             cCCCceEEEEeCCHHHHHHHHHhccCC-CCCcceeccC
Q 014468            8 GKEVAAAFVSFNSRYGAAIALHIQQGV-NPTEWVTEQA   44 (424)
Q Consensus         8 ~~~~~~aFVtF~s~~~A~~a~q~~~~~-~~~~~~v~~A   44 (424)
                      +++.+.|||+|.+.++|..|.+...+. +....+|+.|
T Consensus        38 ~~~kg~afV~f~~~~~a~~Al~~~~~~l~Gr~i~V~rA   75 (75)
T d1hd0a_          38 GRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRA   75 (75)
T ss_dssp             TBCCSEEEEEESSHHHHHHHHHTCCCCBTTBCCEECCC
T ss_pred             CCcCceEEEEECCHHHHHHHHhcCCCEECCCEEEeeEC
Confidence            556799999999999999998853222 2234555544

>d2cq0a1 d.58.7.1 (A:231-320) Eukaryotic translation initiation factor 3 subunit 4 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Eukaryotic translation initiation factor 3 subunit 4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.40  E-value=0.12  Score=37.80  Aligned_cols=40  Identities=30%  Similarity=0.277  Sum_probs=30.2

Q ss_pred             cCCCceEEEEeCCHHHHHHHHHhccCCC--CCcceeccCCCC
Q 014468            8 GKEVAAAFVSFNSRYGAAIALHIQQGVN--PTEWVTEQAPAP   47 (424)
Q Consensus         8 ~~~~~~aFVtF~s~~~A~~a~q~~~~~~--~~~~~v~~AP~P   47 (424)
                      +++.|.|||+|++.++|..|.+.+....  ...++|+.|-..
T Consensus        47 ~~~rg~afV~f~~~~~A~~Ai~~l~g~~~~g~~i~v~~akp~   88 (90)
T d2cq0a1          47 GQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEWAKPS   88 (90)
T ss_dssp             CSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEESSCC
T ss_pred             cccccceeEEECCHHHHHHHHHHhCCCEECCEEEEEEeeeCC
Confidence            3456789999999999999999876543  345778877533

>d1fxla2 d.58.7.1 (A:119-203) Hu antigen D (Hud) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Hu antigen D (Hud)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.14  E-value=0.13  Score=37.23  Aligned_cols=29  Identities=28%  Similarity=0.463  Sum_probs=24.4

Q ss_pred             cCCCceEEEEeCCHHHHHHHHHhccCCCC
Q 014468            8 GKEVAAAFVSFNSRYGAAIALHIQQGVNP   36 (424)
Q Consensus         8 ~~~~~~aFVtF~s~~~A~~a~q~~~~~~~   36 (424)
                      +++.+.|||+|.+.++|..|.+.+.....
T Consensus        45 g~~kg~afV~f~~~~~a~~Ai~~lng~~~   73 (85)
T d1fxla2          45 GVSRGVGFIRFDKRIEAEEAIKGLNGQKP   73 (85)
T ss_dssp             CCEEEEEEEEESSHHHHHHHHHHHTTCCC
T ss_pred             ccCCCeeEEEEcCHHHHHHHHHHhCCCEe
Confidence            45677999999999999999998876543

>d1whwa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Probable RNA-binding protein 19, Rbm19
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.07  E-value=0.18  Score=37.51  Aligned_cols=40  Identities=20%  Similarity=0.013  Sum_probs=29.9

Q ss_pred             cCCCceEEEEeCCHHHHHHHHHhccCCC--CCcceeccCCCC
Q 014468            8 GKEVAAAFVSFNSRYGAAIALHIQQGVN--PTEWVTEQAPAP   47 (424)
Q Consensus         8 ~~~~~~aFVtF~s~~~A~~a~q~~~~~~--~~~~~v~~AP~P   47 (424)
                      +++.+.|||+|++.++|..|.+.+....  ...++|+.|-..
T Consensus        47 g~~~g~afV~f~~~~~a~~A~~~l~g~~~~gr~i~V~~a~~~   88 (99)
T d1whwa_          47 KKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPSTIK   88 (99)
T ss_dssp             CCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEECCCC
T ss_pred             cccCcceEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCC
Confidence            4567899999999999999998876432  345667766543

>d1wg1a_ d.58.7.1 (A:) Probable RNA-binding protein KIAA1579 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Probable RNA-binding protein KIAA1579
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.07  E-value=0.085  Score=38.69  Aligned_cols=39  Identities=15%  Similarity=0.249  Sum_probs=31.3

Q ss_pred             cCCCceEEEEeCCHHHHHHHHHhccCCC--CCcceeccCCC
Q 014468            8 GKEVAAAFVSFNSRYGAAIALHIQQGVN--PTEWVTEQAPA   46 (424)
Q Consensus         8 ~~~~~~aFVtF~s~~~A~~a~q~~~~~~--~~~~~v~~AP~   46 (424)
                      .+..+.|||+|++.++|..|.+.+....  ...++|+.||.
T Consensus        37 ~~~kg~afV~f~~~~~A~~Ai~~ln~~~~~G~~l~V~~a~~   77 (88)
T d1wg1a_          37 DRNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPT   77 (88)
T ss_dssp             EGGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCC
T ss_pred             eccCCceEEEECCHHHHHHHHHHhCCCEECCEEEEEEEcCC
Confidence            3457899999999999999999887653  35677888864

>d2cpza1 d.58.7.1 (A:383-484) CUG triplet repeat RNA-binding protein 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: CUG triplet repeat RNA-binding protein 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.99  E-value=0.13  Score=38.79  Aligned_cols=41  Identities=17%  Similarity=0.228  Sum_probs=31.0

Q ss_pred             CCCceEEEEeCCHHHHHHHHHhccCCC--CCcceeccCCCCCC
Q 014468            9 KEVAAAFVSFNSRYGAAIALHIQQGVN--PTEWVTEQAPAPQD   49 (424)
Q Consensus         9 ~~~~~aFVtF~s~~~A~~a~q~~~~~~--~~~~~v~~AP~P~D   49 (424)
                      +..|.|||+|++.++|..|.+.+....  ...++|+.|-..+|
T Consensus        58 ~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~~i~V~~a~~k~~  100 (102)
T d2cpza1          58 LSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLKRSKND  100 (102)
T ss_dssp             SEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEECCCCSCC
T ss_pred             CCccceEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEeCCCCC
Confidence            445799999999999999998876553  34677888754443

>d2cpfa1 d.58.7.1 (A:362-446) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Probable RNA-binding protein 19, Rbm19
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=89.98  E-value=0.1  Score=37.71  Aligned_cols=35  Identities=20%  Similarity=0.194  Sum_probs=27.0

Q ss_pred             CCceEEEEeCCHHHHHHHHHhccCCC--CCcceeccC
Q 014468           10 EVAAAFVSFNSRYGAAIALHIQQGVN--PTEWVTEQA   44 (424)
Q Consensus        10 ~~~~aFVtF~s~~~A~~a~q~~~~~~--~~~~~v~~A   44 (424)
                      +.|.|||+|.+..+|..|.+.+....  ...++|+.|
T Consensus        42 ~kG~afV~f~~~~~A~~A~~~~~~~~~~g~~i~V~~a   78 (85)
T d2cpfa1          42 SMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEVRIS   78 (85)
T ss_dssp             EEEEEEEEESSHHHHHHHHHHSTTCEETTEECEEECS
T ss_pred             cceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEC
Confidence            35689999999999999998877543  345667666

>d1x5ta1 d.58.7.1 (A:8-90) Splicing factor 3B subunit 4 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor 3B subunit 4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.81  E-value=0.21  Score=35.78  Aligned_cols=37  Identities=22%  Similarity=0.242  Sum_probs=28.5

Q ss_pred             cCCCceEEEEeCCHHHHHHHHHhccCCC--CCcceeccC
Q 014468            8 GKEVAAAFVSFNSRYGAAIALHIQQGVN--PTEWVTEQA   44 (424)
Q Consensus         8 ~~~~~~aFVtF~s~~~A~~a~q~~~~~~--~~~~~v~~A   44 (424)
                      +++.+.|||+|++.++|..|.+.+....  ...++++.|
T Consensus        38 g~~~g~afV~f~~~~~a~~Ai~~~~g~~~~gr~l~v~~a   76 (83)
T d1x5ta1          38 GNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYA   76 (83)
T ss_dssp             CSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEES
T ss_pred             cccCceEEEEECCHHHHHHHHHhCCCcEECCEEEEEEEe
Confidence            4567899999999999999998876543  235667666

>d2cpea1 d.58.7.1 (A:353-453) RNA-binding protein EWS {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein EWS
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.62  E-value=0.15  Score=38.07  Aligned_cols=37  Identities=24%  Similarity=0.219  Sum_probs=29.4

Q ss_pred             cCCCceEEEEeCCHHHHHHHHHhccCCC--CCcceeccC
Q 014468            8 GKEVAAAFVSFNSRYGAAIALHIQQGVN--PTEWVTEQA   44 (424)
Q Consensus         8 ~~~~~~aFVtF~s~~~A~~a~q~~~~~~--~~~~~v~~A   44 (424)
                      ++..+.|||+|.+.++|..|.+.+.+..  ...++|+.|
T Consensus        55 ~~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~a   93 (101)
T d2cpea1          55 GKPKGDATVSYEDPPTAKAAVEWFDGKDFQGSKLKVSLA   93 (101)
T ss_dssp             CSBCSEEEEEBSSHHHHHHHHHHHTTCEETTEECEEECS
T ss_pred             ccccceeeEEecCHHHHHHHHHHhCCCEECCEEEEEEEc
Confidence            4567899999999999999999887653  345777766

>d2cpha1 d.58.7.1 (A:454-547) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Probable RNA-binding protein 19, Rbm19
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=88.97  E-value=0.29  Score=36.05  Aligned_cols=39  Identities=23%  Similarity=0.210  Sum_probs=29.6

Q ss_pred             cCCCceEEEEeCCHHHHHHHHHhcc-CC--CCCcceeccCCC
Q 014468            8 GKEVAAAFVSFNSRYGAAIALHIQQ-GV--NPTEWVTEQAPA   46 (424)
Q Consensus         8 ~~~~~~aFVtF~s~~~A~~a~q~~~-~~--~~~~~~v~~AP~   46 (424)
                      +++.|.|||+|.+.++|..|.+.+. +.  +...++|+.|-+
T Consensus        48 g~~rg~afV~f~~~~~A~~Ai~~l~~~~~~~Gr~l~V~~A~~   89 (94)
T d2cpha1          48 GAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVLEWADS   89 (94)
T ss_dssp             CSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCEEEECCC
T ss_pred             CCcccEEEEEECCHHHHHHHHHHccCCcEECCEEEEEEEcCC
Confidence            4567899999999999999998873 32  234677777743

>d2cqba1 d.58.7.1 (A:1-89) Peptidyl-prolyl cis-trans isomerase E, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Peptidyl-prolyl cis-trans isomerase E, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.94  E-value=0.15  Score=37.18  Aligned_cols=37  Identities=24%  Similarity=0.148  Sum_probs=28.7

Q ss_pred             cCCCceEEEEeCCHHHHHHHHHhccCCC--CCcceeccC
Q 014468            8 GKEVAAAFVSFNSRYGAAIALHIQQGVN--PTEWVTEQA   44 (424)
Q Consensus         8 ~~~~~~aFVtF~s~~~A~~a~q~~~~~~--~~~~~v~~A   44 (424)
                      +++.|.|||+|.+..+|..|.+.+....  ...++|+.|
T Consensus        44 ~~~kg~afV~f~~~~~A~~ai~~l~~~~i~g~~l~v~~a   82 (89)
T d2cqba1          44 EKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA   82 (89)
T ss_dssp             CCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred             ccccceeEEEECCHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence            4567899999999999999998876543  235667666

>d1jmta_ d.58.7.3 (A:) U2AF35 (35 KDa subunit) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Splicing factor U2AF subunits
domain: U2AF35 (35 KDa subunit)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.67  E-value=0.17  Score=38.41  Aligned_cols=39  Identities=18%  Similarity=0.117  Sum_probs=29.4

Q ss_pred             ccCCCceEEEEeCCHHHHHHHHHhccCCC--CCcceeccCC
Q 014468            7 AGKEVAAAFVSFNSRYGAAIALHIQQGVN--PTEWVTEQAP   45 (424)
Q Consensus         7 ~~~~~~~aFVtF~s~~~A~~a~q~~~~~~--~~~~~v~~AP   45 (424)
                      .+++.|.|||+|++..+|..|.+.+..+.  ....+++..|
T Consensus        64 ~~~~~G~~fV~f~~~~~A~~Ai~~lng~~~~gr~i~v~~sP  104 (104)
T d1jmta_          64 GDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIHAELSP  104 (104)
T ss_dssp             SSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEECCEEECC
T ss_pred             CCCEeeEEEEEEechhHHHHHHHHHCCCEECCEEEEEEECC
Confidence            35667999999999999999999987653  2345555544

>d1x4ha1 d.58.7.1 (A:8-105) RNA-binding protein 28 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 28
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=88.53  E-value=0.33  Score=35.71  Aligned_cols=38  Identities=16%  Similarity=0.092  Sum_probs=28.3

Q ss_pred             cCCCceEEEEeCCHHHHHHHHHhccCCC--------CCcceeccCC
Q 014468            8 GKEVAAAFVSFNSRYGAAIALHIQQGVN--------PTEWVTEQAP   45 (424)
Q Consensus         8 ~~~~~~aFVtF~s~~~A~~a~q~~~~~~--------~~~~~v~~AP   45 (424)
                      .++.|.|||+|.+.++|..|.+.+....        ...++|+.|-
T Consensus        47 ~~~~g~afV~F~~~~~a~~ai~~l~~~~~~~g~~~~gr~l~v~~a~   92 (98)
T d1x4ha1          47 EHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGRQLKVDLAV   92 (98)
T ss_dssp             CCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSCEEEEECCC
T ss_pred             ccccceEEEEEcCHHHHHHHHHHcccccccCCcEECCEEEEEEECC
Confidence            4467899999999999999998775321        2356677663

>d1fxla1 d.58.7.1 (A:37-118) Hu antigen D (Hud) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Hu antigen D (Hud)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.38  E-value=0.18  Score=35.97  Aligned_cols=37  Identities=19%  Similarity=0.285  Sum_probs=28.5

Q ss_pred             cCCCceEEEEeCCHHHHHHHHHhccCCC--CCcceeccC
Q 014468            8 GKEVAAAFVSFNSRYGAAIALHIQQGVN--PTEWVTEQA   44 (424)
Q Consensus         8 ~~~~~~aFVtF~s~~~A~~a~q~~~~~~--~~~~~v~~A   44 (424)
                      +++.+.|||+|.+.++|..|.+.+....  ...++|+.|
T Consensus        41 ~~~~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~A   79 (82)
T d1fxla1          41 GQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA   79 (82)
T ss_dssp             CCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred             CCceeeEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence            4567789999999999999998876553  234667666

>d1x4fa1 d.58.7.1 (A:8-106) Matrin 3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Matrin 3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=88.26  E-value=0.18  Score=37.72  Aligned_cols=42  Identities=10%  Similarity=0.011  Sum_probs=32.2

Q ss_pred             CCceEEEEeCCHHHHHHHHHhccCC----CCCcceeccCCCCCCee
Q 014468           10 EVAAAFVSFNSRYGAAIALHIQQGV----NPTEWVTEQAPAPQDVH   51 (424)
Q Consensus        10 ~~~~aFVtF~s~~~A~~a~q~~~~~----~~~~~~v~~AP~P~DIi   51 (424)
                      ..+.|||.|++..+|..|.+.+..+    +...++|+.|..+.+++
T Consensus        54 ~k~~afV~f~~~~~A~~Ai~~~~~~~~~~~gr~l~V~~s~~~~~l~   99 (99)
T d1x4fa1          54 MKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVDLSEKYKKLV   99 (99)
T ss_dssp             TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEEEECSCSSSS
T ss_pred             cCCcEEEEecchHHHHHHHHHHhcCCceECCEEEEEEEcCCcccCC
Confidence            4589999999999999998743221    34568889998888764

>d2adca1 d.58.7.1 (A:335-443) Polypyrimidine tract-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Polypyrimidine tract-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.09  E-value=0.33  Score=36.51  Aligned_cols=36  Identities=14%  Similarity=0.114  Sum_probs=26.8

Q ss_pred             CCCceEEEEeCCHHHHHHHHHhccCC--CCCcceeccC
Q 014468            9 KEVAAAFVSFNSRYGAAIALHIQQGV--NPTEWVTEQA   44 (424)
Q Consensus         9 ~~~~~aFVtF~s~~~A~~a~q~~~~~--~~~~~~v~~A   44 (424)
                      +..+.|||+|.+.++|..|.+.+...  ....++++.|
T Consensus        38 ~~kg~afV~f~~~~~A~~ai~~lng~~l~g~~l~v~~s   75 (109)
T d2adca1          38 NKKENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLS   75 (109)
T ss_dssp             TTSCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEECC
T ss_pred             cccceEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEC
Confidence            44689999999999999999987654  2234555554

>d1rk8a_ d.58.7.1 (A:) RNA-binding protein 8 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 8
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=87.99  E-value=0.17  Score=36.87  Aligned_cols=37  Identities=16%  Similarity=0.143  Sum_probs=27.4

Q ss_pred             cCCCceEEEEeCCHHHHHHHHHhccCCC--CCcceeccC
Q 014468            8 GKEVAAAFVSFNSRYGAAIALHIQQGVN--PTEWVTEQA   44 (424)
Q Consensus         8 ~~~~~~aFVtF~s~~~A~~a~q~~~~~~--~~~~~v~~A   44 (424)
                      +++.+.|||+|.+.++|..|.+.+....  ...++|+.|
T Consensus        46 g~~~g~afV~f~~~~~A~~A~~~lng~~l~g~~l~V~~a   84 (88)
T d1rk8a_          46 GFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWC   84 (88)
T ss_dssp             SSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred             cccccceeEEECCHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence            4557789999999999999998876543  234555544

>d1uawa_ d.58.7.1 (A:) Musashi-1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Musashi-1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=87.87  E-value=0.2  Score=35.59  Aligned_cols=37  Identities=16%  Similarity=0.158  Sum_probs=26.3

Q ss_pred             ccCCCceEEEEeCCHHHHHHHHHhccCCC--CCcceeccC
Q 014468            7 AGKEVAAAFVSFNSRYGAAIALHIQQGVN--PTEWVTEQA   44 (424)
Q Consensus         7 ~~~~~~~aFVtF~s~~~A~~a~q~~~~~~--~~~~~v~~A   44 (424)
                      .+++.|.|||+|++.++|+.|.+. ..+.  ....+|+.|
T Consensus        38 tg~~kG~aFV~f~~~~~a~~al~~-~~~~i~Gr~i~V~~A   76 (77)
T d1uawa_          38 TKRSRGFGFVTFMDQAGVDKVLAQ-SRHELDSKTIDPKVA   76 (77)
T ss_dssp             SSSCSSEEEECCCCTTHHHHHHHT-TTCCCSSCCCEEEEC
T ss_pred             CCCccceEEEEECCHHHHHHHHHc-CCCEECCeEEEEEEC
Confidence            356789999999999999999874 3222  234556555

>d1nu4a_ d.58.7.1 (A:) Splicesomal U1A protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicesomal U1A protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.43  E-value=0.22  Score=36.39  Aligned_cols=42  Identities=29%  Similarity=0.263  Sum_probs=31.6

Q ss_pred             CCCceEEEEeCCHHHHHHHHHhccCCC--CCcceeccCCCCCCe
Q 014468            9 KEVAAAFVSFNSRYGAAIALHIQQGVN--PTEWVTEQAPAPQDV   50 (424)
Q Consensus         9 ~~~~~aFVtF~s~~~A~~a~q~~~~~~--~~~~~v~~AP~P~DI   50 (424)
                      +..+.|||+|++.++|..|.+.++...  ...++++.|=..+|+
T Consensus        44 ~~~g~afV~F~~~~~A~~A~~~~~~~~~~g~~l~v~~ak~~~~~   87 (91)
T d1nu4a_          44 KMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQYAKTDSDI   87 (91)
T ss_dssp             HHTTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSSCCTH
T ss_pred             cCCCceEEEECCHHHHHHHHHHhCCCEECCEEEEEEEeCCCchh
Confidence            346899999999999999999887543  345677777555553

>d1weya_ d.58.7.1 (A:) Calcipressin-1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Calcipressin-1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=87.34  E-value=0.29  Score=36.90  Aligned_cols=36  Identities=19%  Similarity=0.012  Sum_probs=27.5

Q ss_pred             CCCceEEEEeCCHHHHHHHHHhccCCCC--CcceeccC
Q 014468            9 KEVAAAFVSFNSRYGAAIALHIQQGVNP--TEWVTEQA   44 (424)
Q Consensus         9 ~~~~~aFVtF~s~~~A~~a~q~~~~~~~--~~~~v~~A   44 (424)
                      +..++|||+|++.++|..|.+.++...-  ..++|+.|
T Consensus        44 k~~~~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~a   81 (104)
T d1weya_          44 KSFKRVRINFSNPLSAADARLRLHKTEFLGKEMKLYFA   81 (104)
T ss_dssp             TTTTEEEEECSSTTHHHHHHHTSTTSEETTEECEEECC
T ss_pred             cCCCEEEEEECCHHHHHHHHHHhcccccCCCEeEEeec
Confidence            5578999999999999999998876532  23455555

>d1whxa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Probable RNA-binding protein 19, Rbm19
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=87.34  E-value=0.24  Score=37.48  Aligned_cols=38  Identities=21%  Similarity=0.075  Sum_probs=29.2

Q ss_pred             CCCceEEEEeCCHHHHHHHHHhccCCC--CCcceeccCCC
Q 014468            9 KEVAAAFVSFNSRYGAAIALHIQQGVN--PTEWVTEQAPA   46 (424)
Q Consensus         9 ~~~~~aFVtF~s~~~A~~a~q~~~~~~--~~~~~v~~AP~   46 (424)
                      +..+.|||+|.+..+|+.|.+.++...  ...+.|+.||.
T Consensus        44 ~~kg~afV~f~~~~~A~~A~~~lng~~~~gr~l~v~~a~~   83 (111)
T d1whxa_          44 EGGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPI   83 (111)
T ss_dssp             SSSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEET
T ss_pred             ccCceEEEEEcCHHHHHHHHHHHcCCccCCCeEEEEECCC
Confidence            456899999999999999999887653  34566666653

>d1x4ea1 d.58.7.1 (A:8-79) RNA-binding motif, single-stranded-interacting protein 2, RBMS2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding motif, single-stranded-interacting protein 2, RBMS2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.29  E-value=0.22  Score=34.58  Aligned_cols=28  Identities=25%  Similarity=0.250  Sum_probs=23.5

Q ss_pred             ccCCCceEEEEeCCHHHHHHHHHhccCC
Q 014468            7 AGKEVAAAFVSFNSRYGAAIALHIQQGV   34 (424)
Q Consensus         7 ~~~~~~~aFVtF~s~~~A~~a~q~~~~~   34 (424)
                      .+++.+.|||+|++.++|..|.+.+...
T Consensus        36 ~~~~~g~afV~f~~~~~A~~Ai~~lng~   63 (72)
T d1x4ea1          36 TNKCKGYGFVDFDSPSAAQKAVTALKAS   63 (72)
T ss_dssp             SCSCCSEEEEEESCHHHHHHHHHHHHHH
T ss_pred             cccccceeEEEECCHHHHHHHHHHhCCC
Confidence            4567899999999999999999876543

>d1cvja2 d.58.7.1 (A:91-179) Poly(A)-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Poly(A)-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.29  E-value=0.16  Score=37.02  Aligned_cols=36  Identities=17%  Similarity=0.189  Sum_probs=27.4

Q ss_pred             CCceEEEEeCCHHHHHHHHHhccCCC--CCcceeccCC
Q 014468           10 EVAAAFVSFNSRYGAAIALHIQQGVN--PTEWVTEQAP   45 (424)
Q Consensus        10 ~~~~aFVtF~s~~~A~~a~q~~~~~~--~~~~~v~~AP   45 (424)
                      ..+.|||+|++.++|..|.+.+....  ...+.|+.|-
T Consensus        47 ~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~i~V~~a~   84 (89)
T d1cvja2          47 SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK   84 (89)
T ss_dssp             CCSCEEEEESCHHHHHHHTTSSSEEEETTEEEEEEECC
T ss_pred             CcceeEEEECCHHHHHHHHHHcCCCEECCEEEEEEECC
Confidence            46899999999999999998776442  3456676663

>d1p1ta_ d.58.7.1 (A:) Cleavage stimulation factor, 64 kda subunit {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Cleavage stimulation factor, 64 kda subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.27  E-value=0.19  Score=37.72  Aligned_cols=38  Identities=16%  Similarity=0.184  Sum_probs=28.8

Q ss_pred             CCCceEEEEeCCHHHHHHHHHhccCCC--CCcceeccCCC
Q 014468            9 KEVAAAFVSFNSRYGAAIALHIQQGVN--PTEWVTEQAPA   46 (424)
Q Consensus         9 ~~~~~aFVtF~s~~~A~~a~q~~~~~~--~~~~~v~~AP~   46 (424)
                      ++.+.|||+|.+.++|..|.+.+....  ...++|+.|..
T Consensus        48 ~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~i~V~~a~~   87 (104)
T d1p1ta_          48 KPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAAS   87 (104)
T ss_dssp             EEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEETTC
T ss_pred             ccCCceEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCC
Confidence            346789999999999999998876443  34567777644

>d1x4ga1 d.58.7.1 (A:8-103) Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nucleolysin TIAR
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.27  E-value=0.33  Score=35.93  Aligned_cols=35  Identities=23%  Similarity=0.154  Sum_probs=27.1

Q ss_pred             CCceEEEEeCCHHHHHHHHHhccCCC--CCcceeccC
Q 014468           10 EVAAAFVSFNSRYGAAIALHIQQGVN--PTEWVTEQA   44 (424)
Q Consensus        10 ~~~~aFVtF~s~~~A~~a~q~~~~~~--~~~~~v~~A   44 (424)
                      ..+.|||+|.+.++|..|.+.+....  ...++++.|
T Consensus        53 ~kg~afV~f~~~~~A~~Ai~~l~~~~i~g~~l~v~~a   89 (96)
T d1x4ga1          53 EKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWG   89 (96)
T ss_dssp             TTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred             cceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEc
Confidence            46899999999999999998876553  334566655

>d1x4aa1 d.58.7.1 (A:9-103) Splicing factor, arginine/serine-rich 1, SFRS1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor, arginine/serine-rich 1, SFRS1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.26  E-value=0.35  Score=35.57  Aligned_cols=39  Identities=21%  Similarity=0.122  Sum_probs=30.2

Q ss_pred             cCCCceEEEEeCCHHHHHHHHHhccCCC--CCcceeccCCC
Q 014468            8 GKEVAAAFVSFNSRYGAAIALHIQQGVN--PTEWVTEQAPA   46 (424)
Q Consensus         8 ~~~~~~aFVtF~s~~~A~~a~q~~~~~~--~~~~~v~~AP~   46 (424)
                      .+..+.|||+|.+.++|..|.+.++...  ...++|+.|-+
T Consensus        50 ~~~~g~afV~f~~~e~a~~Ai~~l~g~~~~g~~l~V~~a~~   90 (95)
T d1x4aa1          50 RGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRS   90 (95)
T ss_dssp             SSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECCCC
T ss_pred             ccccceEEEEECCHHHHHHHHHHhCCCEECCEEEEEEeccC
Confidence            3456899999999999999999887653  34577777644

>d2cqga1 d.58.7.1 (A:96-185) TAR DNA-binding protein 43, TDP-43 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: TAR DNA-binding protein 43, TDP-43
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.17  E-value=0.18  Score=37.04  Aligned_cols=39  Identities=10%  Similarity=0.083  Sum_probs=27.8

Q ss_pred             cCCCceEEEEeCCHHHHHHHHHhccCCCCCcceeccCCC
Q 014468            8 GKEVAAAFVSFNSRYGAAIALHIQQGVNPTEWVTEQAPA   46 (424)
Q Consensus         8 ~~~~~~aFVtF~s~~~A~~a~q~~~~~~~~~~~v~~AP~   46 (424)
                      +++.|.|||+|.+..+|..|.+..+.-+...+.|+.|-+
T Consensus        47 g~srG~aFV~f~~~~~a~~al~~~~~l~Gr~i~v~~a~~   85 (90)
T d2cqga1          47 GHSKGFGFVRFTEYETQVKVMSQRHMIDGRWCDCKLPNS   85 (90)
T ss_dssp             CSEEEEEEEEESSHHHHHHHHHSCEEETTEEEEEECCCT
T ss_pred             cccCCEEEEEECCHHHHHHHHhcCCccCCEEeEEEeCCC
Confidence            455789999999999999998753322334566766643

>d1l3ka1 d.58.7.1 (A:8-91) Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nuclear ribonucleoprotein A1 (RNP A1, UP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.02  E-value=0.18  Score=36.46  Aligned_cols=37  Identities=11%  Similarity=0.121  Sum_probs=25.9

Q ss_pred             cCCCceEEEEeCCHHHHHHHHHhccCC-CCCcceeccC
Q 014468            8 GKEVAAAFVSFNSRYGAAIALHIQQGV-NPTEWVTEQA   44 (424)
Q Consensus         8 ~~~~~~aFVtF~s~~~A~~a~q~~~~~-~~~~~~v~~A   44 (424)
                      +++.|+|||+|++..+|..|.+..... +....+|+.|
T Consensus        45 g~~kG~afV~f~~~~~a~~ai~~~~~~i~Gr~i~V~~A   82 (84)
T d1l3ka1          45 KRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRA   82 (84)
T ss_dssp             CCEEEEEEEEESSHHHHHHHHHTCSCEETTEECEEEEC
T ss_pred             CCcccEEEEEEcCHHHHHHHHHhCCCEECCEEEEEEee
Confidence            567899999999999999998752211 2234555554

>d2adca2 d.58.7.1 (A:444-531) Polypyrimidine tract-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Polypyrimidine tract-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.85  E-value=0.38  Score=34.74  Aligned_cols=38  Identities=16%  Similarity=0.023  Sum_probs=28.7

Q ss_pred             ccCCCceEEEEeCCHHHHHHHHHhccCCC---CCcceeccC
Q 014468            7 AGKEVAAAFVSFNSRYGAAIALHIQQGVN---PTEWVTEQA   44 (424)
Q Consensus         7 ~~~~~~~aFVtF~s~~~A~~a~q~~~~~~---~~~~~v~~A   44 (424)
                      ..+..+.|||+|++.++|..|...++...   ...++|+.|
T Consensus        44 ~~~~~~~afV~f~~~~~A~~A~~~l~~~~i~~g~~l~v~~s   84 (88)
T d2adca2          44 FQKDRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFS   84 (88)
T ss_dssp             CSSSTTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEEC
T ss_pred             eecccceeEEEECCHHHHHHHHHhccCCEecCCCEEEEEeC
Confidence            34567899999999999999998877543   345666654

>d2cpxa1 d.58.7.1 (A:291-392) RNA-binding protein 41, RBM41 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 41, RBM41
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.18  E-value=0.59  Score=34.54  Aligned_cols=39  Identities=28%  Similarity=0.336  Sum_probs=30.0

Q ss_pred             ccCCCceEEEEeCCHHHHHHHHHhccCCC--CCcceeccCC
Q 014468            7 AGKEVAAAFVSFNSRYGAAIALHIQQGVN--PTEWVTEQAP   45 (424)
Q Consensus         7 ~~~~~~~aFVtF~s~~~A~~a~q~~~~~~--~~~~~v~~AP   45 (424)
                      .+++.+.|||+|++.++|+.|.+.+....  ...++|+.|=
T Consensus        56 ~g~~~g~~fV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ak   96 (102)
T d2cpxa1          56 TGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEFGK   96 (102)
T ss_dssp             CSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEECC
T ss_pred             cccccccceEEeccHHHHHHHHHHhCCCEECCEEEEEEeCC
Confidence            45678999999999999999999876543  2346666663

>d1x0fa1 d.58.7.1 (A:183-257) Nuclear ribonucleoprotein D0 (AUF1) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nuclear ribonucleoprotein D0 (AUF1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.05  E-value=0.23  Score=35.10  Aligned_cols=24  Identities=13%  Similarity=0.209  Sum_probs=20.4

Q ss_pred             ccCCCceEEEEeCCHHHHHHHHHh
Q 014468            7 AGKEVAAAFVSFNSRYGAAIALHI   30 (424)
Q Consensus         7 ~~~~~~~aFVtF~s~~~A~~a~q~   30 (424)
                      .+++.|.|||+|++.++|..|.+.
T Consensus        37 t~~~rG~~FV~f~~~~~a~~al~~   60 (75)
T d1x0fa1          37 TNKRRGFCFITFKEEEPVKKIMEK   60 (75)
T ss_dssp             TCCTTCCEEEEESSSHHHHHHTTC
T ss_pred             ccccccEEEEEECCHHHHHHHHhh
Confidence            356789999999999999999765

>d2cq3a1 d.58.7.1 (A:110-202) RNA-binding protein 9 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 9
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.85  E-value=0.37  Score=35.33  Aligned_cols=36  Identities=19%  Similarity=0.154  Sum_probs=28.4

Q ss_pred             CCCceEEEEeCCHHHHHHHHHhccCCC--CCcceeccC
Q 014468            9 KEVAAAFVSFNSRYGAAIALHIQQGVN--PTEWVTEQA   44 (424)
Q Consensus         9 ~~~~~aFVtF~s~~~A~~a~q~~~~~~--~~~~~v~~A   44 (424)
                      .+.+.|||+|++.++|..|.+.+....  ...++|+.|
T Consensus        49 ~~kg~afV~f~~~~~a~~Ai~~l~~~~~~g~~l~V~~A   86 (93)
T d2cq3a1          49 GSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNA   86 (93)
T ss_dssp             TTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred             CCcceeEEEECCHHHHHHHHHHcCCCEECCEEEEEEec
Confidence            357899999999999999998876653  345677766

>d2cpda1 d.58.7.1 (A:223-308) APOBEC1 stimulating protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: APOBEC1 stimulating protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.49  E-value=0.33  Score=34.90  Aligned_cols=37  Identities=27%  Similarity=0.195  Sum_probs=28.9

Q ss_pred             cCCCceEEEEeCCHHHHHHHHHhccCCC--CCcceeccC
Q 014468            8 GKEVAAAFVSFNSRYGAAIALHIQQGVN--PTEWVTEQA   44 (424)
Q Consensus         8 ~~~~~~aFVtF~s~~~A~~a~q~~~~~~--~~~~~v~~A   44 (424)
                      .+..+.|||+|.+..+|..|.+.++...  ...++|+.|
T Consensus        41 ~~~rg~afV~f~~~~~A~~Ai~~l~~~~i~g~~i~V~~a   79 (86)
T d2cpda1          41 KKIRDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLA   79 (86)
T ss_dssp             EECSSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEECC
T ss_pred             ccccEEEEEEeCCHHHHHHHHHHcCCCEECCEEEEEEec
Confidence            4567899999999999999999886543  345667766

>d2cqia1 d.58.7.1 (A:1-90) Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nucleolysin TIAR
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.46  E-value=0.44  Score=34.61  Aligned_cols=35  Identities=29%  Similarity=0.232  Sum_probs=27.4

Q ss_pred             CCceEEEEeCCHHHHHHHHHhccCCC--CCcceeccC
Q 014468           10 EVAAAFVSFNSRYGAAIALHIQQGVN--PTEWVTEQA   44 (424)
Q Consensus        10 ~~~~aFVtF~s~~~A~~a~q~~~~~~--~~~~~v~~A   44 (424)
                      ..+.|||+|.+.++|..|.+.+....  ...++|+.|
T Consensus        47 ~~~~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~a   83 (90)
T d2cqia1          47 NDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWA   83 (90)
T ss_dssp             SCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred             cceeeEEEECCHHHHHHHHHHcCCCEECCEEEEEEEc
Confidence            46799999999999999998876543  335667766

>d1wi8a_ d.58.7.1 (A:) Eukaryotic translation initiation factor 4B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Eukaryotic translation initiation factor 4B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.42  E-value=0.47  Score=35.34  Aligned_cols=40  Identities=13%  Similarity=0.053  Sum_probs=26.8

Q ss_pred             cCCCceEEEEeCCHHHHHHHHHhccCCC--CCcceeccCCCCC
Q 014468            8 GKEVAAAFVSFNSRYGAAIALHIQQGVN--PTEWVTEQAPAPQ   48 (424)
Q Consensus         8 ~~~~~~aFVtF~s~~~A~~a~q~~~~~~--~~~~~v~~AP~P~   48 (424)
                      .++.+.|||+|.+.++|+.|.+ +....  ...++|+.|-+.+
T Consensus        54 g~~~g~afV~f~~~e~a~~~~~-~~~~~~~gr~l~V~~a~~~~   95 (104)
T d1wi8a_          54 ERLKGFGYAEFEDLDSLLSALS-LNEESLGNKRIRVDVADQAQ   95 (104)
T ss_dssp             TSBCSCEEEEESSHHHHHHHHG-GGTCEETTEECEEEECCCCC
T ss_pred             CCcceeeeEEECCHHHHHHHHH-cCCCEECCEEEEEEECCCCC
Confidence            4456899999999999986654 44332  2356777765443

>d2f9da1 d.58.7.1 (A:12-125) Pre-mRNA branch site protein p14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Pre-mRNA branch site protein p14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.41  E-value=0.4  Score=36.42  Aligned_cols=39  Identities=21%  Similarity=0.164  Sum_probs=29.9

Q ss_pred             cCCCceEEEEeCCHHHHHHHHHhccCCC--CCcceeccCCC
Q 014468            8 GKEVAAAFVSFNSRYGAAIALHIQQGVN--PTEWVTEQAPA   46 (424)
Q Consensus         8 ~~~~~~aFVtF~s~~~A~~a~q~~~~~~--~~~~~v~~AP~   46 (424)
                      .+..|+|||+|.+..+|..|.+.+....  ...++|+.|.+
T Consensus        43 ~~~kG~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V~~a~~   83 (114)
T d2f9da1          43 PETRGTAYVVYEDIFDAKNACDHLSGFNVCNRYLVVLYYNA   83 (114)
T ss_dssp             TTTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCH
T ss_pred             CCcCCeEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEcCC
Confidence            3456899999999999999999887653  34566776643

>d1wf0a_ d.58.7.1 (A:) TAR DNA-binding protein 43, TDP-43 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: TAR DNA-binding protein 43, TDP-43
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.27  E-value=0.16  Score=37.00  Aligned_cols=40  Identities=18%  Similarity=-0.031  Sum_probs=27.2

Q ss_pred             ccCCCceEEEEeCCHHHHHHHHHhccCCCCCcceeccCCC
Q 014468            7 AGKEVAAAFVSFNSRYGAAIALHIQQGVNPTEWVTEQAPA   46 (424)
Q Consensus         7 ~~~~~~~aFVtF~s~~~A~~a~q~~~~~~~~~~~v~~AP~   46 (424)
                      ..++.+.|||+|++.++|+.|.+.-+.-+...++|+.|-+
T Consensus        38 ~~~~~gfafV~f~~~~~a~~a~~~~~~i~g~~l~v~~a~~   77 (88)
T d1wf0a_          38 PKPFRAFAFVTFADDQIAQSLCGEDLIIKGISVHISNAEP   77 (88)
T ss_dssp             CSSCCSCCEEECSCHHHHHHTTTCEEEETTEEEEEECCCC
T ss_pred             eeccCceEEEEECCHHHHHHHHhCCCEECCEEeEEEeCCC
Confidence            3456789999999999998886522222334567777743

>d2cqha1 d.58.7.1 (A:2-81) IGF-II mRNA-binding protein 2 isoform A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: IGF-II mRNA-binding protein 2 isoform A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.17  E-value=0.28  Score=34.92  Aligned_cols=36  Identities=17%  Similarity=0.138  Sum_probs=28.4

Q ss_pred             CCceEEEEeCCHHHHHHHHHhccCC---CCCcceeccCC
Q 014468           10 EVAAAFVSFNSRYGAAIALHIQQGV---NPTEWVTEQAP   45 (424)
Q Consensus        10 ~~~~aFVtF~s~~~A~~a~q~~~~~---~~~~~~v~~AP   45 (424)
                      +.++|||+|.+.++|..|.+.+...   +...++|+.|-
T Consensus        36 ~rg~aFV~f~~~~~A~~Ai~~lng~~~~~G~~i~V~~a~   74 (80)
T d2cqha1          36 KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDYSV   74 (80)
T ss_dssp             ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEECC
T ss_pred             ccceEEEEECCHHHHHHHHHHhCCCeEECCEEEEEEEcC
Confidence            4689999999999999999988753   23457777764

>d2b0ga1 d.58.7.1 (A:1-83) Splicesomal U1A protein {Drosophila melanogaster [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicesomal U1A protein
species: Drosophila melanogaster [TaxId: 7227]

Probab=84.76  E-value=0.57  Score=33.36  Aligned_cols=27  Identities=26%  Similarity=0.317  Sum_probs=23.0

Q ss_pred             cCCCceEEEEeCCHHHHHHHHHhccCC
Q 014468            8 GKEVAAAFVSFNSRYGAAIALHIQQGV   34 (424)
Q Consensus         8 ~~~~~~aFVtF~s~~~A~~a~q~~~~~   34 (424)
                      .+..+.|||.|.+.++|..|.+.++..
T Consensus        42 ~~~~g~afV~f~~~~~A~~A~~~l~g~   68 (83)
T d2b0ga1          42 PNRHDIAFVEFTTELQSNAAKEALQGF   68 (83)
T ss_dssp             TTTCSCEEEEESSHHHHHHHHHHHTTC
T ss_pred             cccceeEEEecCCHHHHHHHHHHhCCc
Confidence            345689999999999999999988754

>d2adba1 d.58.7.1 (A:177-284) Polypyrimidine tract-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Polypyrimidine tract-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.73  E-value=0.31  Score=36.79  Aligned_cols=39  Identities=13%  Similarity=0.078  Sum_probs=28.6

Q ss_pred             cccCCCceEEEEeCCHHHHHHHHHhccCCCC----CcceeccC
Q 014468            6 LAGKEVAAAFVSFNSRYGAAIALHIQQGVNP----TEWVTEQA   44 (424)
Q Consensus         6 ~~~~~~~~aFVtF~s~~~A~~a~q~~~~~~~----~~~~v~~A   44 (424)
                      ...+..+.|||+|++.++|..|.+.+.....    ..+++..+
T Consensus        40 ~~~~~~g~aFV~f~~~e~A~~Ai~~ln~~~l~~~~~~l~v~~s   82 (108)
T d2adba1          40 FTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFS   82 (108)
T ss_dssp             EEETTEEEEEEEESCHHHHHHHHHHHHSCCSSTTCCCCEEEEC
T ss_pred             EeeCCCCeEEEEECCHHHHHHHHHHHCCCEeccCCcEEEEEec
Confidence            3445678999999999999999988776532    34555443

>d2cpia1 d.58.7.1 (A:101-189) E3 ubiquitin protein ligase CNOT4 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: E3 ubiquitin protein ligase CNOT4
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=83.46  E-value=0.44  Score=34.64  Aligned_cols=26  Identities=23%  Similarity=0.254  Sum_probs=21.6

Q ss_pred             CCCceEEEEeCCHHHHHHHHHhccCC
Q 014468            9 KEVAAAFVSFNSRYGAAIALHIQQGV   34 (424)
Q Consensus         9 ~~~~~aFVtF~s~~~A~~a~q~~~~~   34 (424)
                      .+.+.|||+|.+.++|..|.+.+...
T Consensus        54 ~~~g~aFV~f~~~~~A~~Ai~~lng~   79 (89)
T d2cpia1          54 GPSASAYVTYIRSEDALRAIQCVNNV   79 (89)
T ss_dssp             CCCEEEEEEESSHHHHHHHHHHHTTE
T ss_pred             CcceEEEEecccchhHHHHHHHhCCC
Confidence            34578999999999999999877543

>d2dita1 d.58.7.1 (A:8-106) HIV Tat-specific factor 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: HIV Tat-specific factor 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.40  E-value=0.7  Score=34.26  Aligned_cols=38  Identities=16%  Similarity=0.066  Sum_probs=29.6

Q ss_pred             ccCCCceEEEEeCCHHHHHHHHHhccCCC--CCcceeccC
Q 014468            7 AGKEVAAAFVSFNSRYGAAIALHIQQGVN--PTEWVTEQA   44 (424)
Q Consensus         7 ~~~~~~~aFVtF~s~~~A~~a~q~~~~~~--~~~~~v~~A   44 (424)
                      ..++.|.|||+|++.++|..|.+.+....  ...++++.+
T Consensus        53 ~~~~~G~~fV~f~~~e~A~~A~~~lng~~~~gr~i~v~~~   92 (99)
T d2dita1          53 DRHPDGVASVSFRDPEEADYCIQTLDGRWFGGRQITAQAW   92 (99)
T ss_dssp             TTCTTCEEEEECSCHHHHHHHHHHSTTCEETTEECEEEEC
T ss_pred             CCCCccEEEEEECCHHHHHHHHHHhCCcEECCEEEEEEEe
Confidence            44567899999999999999999987653  334566655

>d2cqda1 d.58.7.1 (A:1-103) RNA-binding region containing protein 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding region containing protein 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.39  E-value=0.55  Score=35.04  Aligned_cols=37  Identities=22%  Similarity=0.188  Sum_probs=26.7

Q ss_pred             cCCCceEEEEeCCHHHHHHHHHhccCC-CCCcceeccC
Q 014468            8 GKEVAAAFVSFNSRYGAAIALHIQQGV-NPTEWVTEQA   44 (424)
Q Consensus         8 ~~~~~~aFVtF~s~~~A~~a~q~~~~~-~~~~~~v~~A   44 (424)
                      +++.+.|||+|++.++|+.|.+..... +...++|+.|
T Consensus        49 g~~kg~afV~f~~~~~A~~Ai~~~~~~l~Gr~l~V~~a   86 (103)
T d2cqda1          49 GKSRGYGFVTMADRAAAERACKDPNPIIDGRKANVNLA   86 (103)
T ss_dssp             CCCCSEEEEEESSHHHHHHHHTCSSCEETTEECEEEES
T ss_pred             cccCCeEEEEECCHHHHHHHHHHCCCcCCCEEEEEEEc
Confidence            456789999999999999999865421 1234556655

>d1fjeb1 d.58.7.1 (B:1-91) Nucleolin {Golden hamster (Mesocricetus auratus) [TaxId: 10036]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nucleolin
species: Golden hamster (Mesocricetus auratus) [TaxId: 10036]

Probab=82.23  E-value=0.47  Score=34.66  Aligned_cols=37  Identities=24%  Similarity=0.309  Sum_probs=26.6

Q ss_pred             ccCCCceEEEEeCCHHHHHHHHHhccCCC--CCcceeccC
Q 014468            7 AGKEVAAAFVSFNSRYGAAIALHIQQGVN--PTEWVTEQA   44 (424)
Q Consensus         7 ~~~~~~~aFVtF~s~~~A~~a~q~~~~~~--~~~~~v~~A   44 (424)
                      .+++.+.|||+|.+..+|+.|.+ +....  ...++|+.|
T Consensus        50 ~g~~kg~afv~F~~~e~a~~Al~-~~g~~~~g~~i~V~~a   88 (91)
T d1fjeb1          50 TGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKP   88 (91)
T ss_dssp             EETTTTEEEEEESSHHHHHHHHH-GGGEEETTEEEEEECC
T ss_pred             CCCccEEeEEeeCCHHHHHHHHh-cCCcEECCEEEEEEec
Confidence            35567899999999999999986 44332  334555554

>d3begb1 d.58.7.1 (B:121-207) Splicing factor, arginine/serine-rich 1, SFRS1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor, arginine/serine-rich 1, SFRS1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.43  E-value=0.77  Score=32.99  Aligned_cols=25  Identities=12%  Similarity=0.129  Sum_probs=21.6

Q ss_pred             CceEEEEeCCHHHHHHHHHhccCCC
Q 014468           11 VAAAFVSFNSRYGAAIALHIQQGVN   35 (424)
Q Consensus        11 ~~~aFVtF~s~~~A~~a~q~~~~~~   35 (424)
                      -+.|||+|.+.++|+.|...++...
T Consensus        35 ~g~afV~f~~~~~a~~Ai~~l~g~~   59 (87)
T d3begb1          35 DGTGVVEFVRKEDMTYAVRKLDNTK   59 (87)
T ss_dssp             TSEEEEEESSHHHHHHHHHHHTTCB
T ss_pred             cceeeEEeCCHHHHHHHHHHhCCCE
Confidence            4899999999999999998876543

>d2cqca1 d.58.7.1 (A:109-191) Arginine/serine-rich splicing factor 10 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Arginine/serine-rich splicing factor 10
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.86  E-value=0.49  Score=33.68  Aligned_cols=27  Identities=26%  Similarity=0.241  Sum_probs=22.4

Q ss_pred             cCCCceEEEEeCCHHHHHHHHHhccCC
Q 014468            8 GKEVAAAFVSFNSRYGAAIALHIQQGV   34 (424)
Q Consensus         8 ~~~~~~aFVtF~s~~~A~~a~q~~~~~   34 (424)
                      +++.+.|||+|++.++|..|.+.+...
T Consensus        48 ~~~~g~afV~f~~~~~A~~Ai~~l~g~   74 (83)
T d2cqca1          48 RRSRGFAFVYFENVDDAKEAKERANGM   74 (83)
T ss_dssp             SSEEEEEEEEESSHHHHHHHHHHHTTE
T ss_pred             cccccceEEEECCHHHHHHHHHHcCCC
Confidence            455779999999999999999876543

>d1x5oa1 d.58.7.1 (A:8-108) RNA-binding motif, single-stranded-interacting protein 1, RBMS1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding motif, single-stranded-interacting protein 1, RBMS1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.62  E-value=0.68  Score=34.34  Aligned_cols=28  Identities=14%  Similarity=0.151  Sum_probs=23.5

Q ss_pred             cCCCceEEEEeCCHHHHHHHHHhccCCC
Q 014468            8 GKEVAAAFVSFNSRYGAAIALHIQQGVN   35 (424)
Q Consensus         8 ~~~~~~aFVtF~s~~~A~~a~q~~~~~~   35 (424)
                      .+..+.|||+|.+.++|..|.+.+....
T Consensus        56 ~~~~g~afV~f~~~~~A~~Ai~~lng~~   83 (101)
T d1x5oa1          56 GTSRGVGFARMESTEKCEAVIGHFNGKF   83 (101)
T ss_dssp             SCEEEEEEEEESCHHHHHHHHHHHBTCC
T ss_pred             cccccceeEEeCCHHHHHHHHHHhCCCE
Confidence            3457799999999999999998887654

>d1u6fa1 d.58.7.1 (A:1-139) RNA-binding protein UBP1 {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein UBP1
species: Trypanosoma cruzi [TaxId: 5693]

Probab=80.04  E-value=0.62  Score=36.67  Aligned_cols=36  Identities=22%  Similarity=0.163  Sum_probs=27.7

Q ss_pred             CCCceEEEEeCCHHHHHHHHHhccCC--CCCcceeccC
Q 014468            9 KEVAAAFVSFNSRYGAAIALHIQQGV--NPTEWVTEQA   44 (424)
Q Consensus         9 ~~~~~aFVtF~s~~~A~~a~q~~~~~--~~~~~~v~~A   44 (424)
                      ++.|+|||+|.+.++|..|.+.+...  +...++|+.|
T Consensus        82 ~~rg~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~a  119 (139)
T d1u6fa1          82 QSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVALA  119 (139)
T ss_dssp             EEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEEES
T ss_pred             cccceeeEEECCHHHHHHHHHHhCCCEECCEEEEEEEc
Confidence            45678999999999999999887644  2345677665