Citrus Sinensis ID: 014471

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420----
Protein Sequence
MSPDSNKRPGIPPSHPNNNNPNAISLPFSHMVLPSSHYRPLLDSLPPLSPSMSSFSDPNSGNNTTSVCIDERVVNSLGLSIPSPVNRVTNNNGSRVSENLPPRRGHRRSSSDIPLGFSAMIQSSTQLIPIGSKGAIEKPIQLVKQESEWNNVKKDASRNVEGMGERKSEEDVADDLFNEYMNLENIDTLNSSCTEDKDMDSRASGSKTNGCESSDNEVESRVYGRSSSGILSEKREGIKRSACGDIAPTVRHCRSVSMDSYMGNLPFDDESLRLPPGGQLSPGNPSDGNLAKMSLEFNGEFNDAELKKIWANEKLAEIALSDPKRAKRILANRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLPFLIRAILIVHLFVFLTLFFFREILRGLQVRTMS
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHccccccccccccccccccccHHHHHHHHHHcHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHccccccccccccccccccccccccccccccccccccccccHHHHHHHccHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEccc
Coil and Loop (DISEMBL)
mspdsnkrpgippshpnnnnpnaislpfshmvlpsshyrplldslpplspsmssfsdpnsgnnttsvcidervvnslglsipspvnrvtnnngsrvsenlpprrghrrsssdiplgfSAMIQSStqlipigskgaiekpiQLVKQESEWNNVKKDAsrnvegmgerkseeDVADDLFNEYMNlenidtlnssctedkdmdsrasgsktngcessdnevesrvygrsssgilsekregikrsacgdiaptvrhcrsvsmdsymgnlpfddeslrlppggqlspgnpsdgnlakmslefngefndAELKKIWANEKLAEIALSDPKRAKRILANRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLPFLIRAILIVHLFVFLTLFFFREILRGLQVRTMS
Flexible Loop (DISEMBL)
mspdsnkrpgippshpnnNNPNAISLPFSHMVLPSSHYRPLLDSLPPLSPSMSSFSDPNSGNNTTSVCIDERVVNSlglsipspvnrvtnnngsrvsenlpprrghrrssSDIPLGFSAMIQSSTQLIPIGSKGAIEKPIQLvkqesewnnvkkdasrnvegmgerkseedVADDLFNEYMNLEnidtlnssctedkdmdsrasgsktngcessdnevesrvygrsssgilsekregikrsacgdiaptvrHCRSVSMDSYMGNLPFDDESLRLPPGGQLSPGNPSDGNLAKMSLEFNGEFNDAELKKIWANEKLAeialsdpkrakrilanrqsaarskerkMRYISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLPFLIRAILIVHLFVFLTLFFFREILRGLQVRTMS
Low Complexity Region (SEG)
MSPDSNKRpgippshpnnnnpnAISLPFSHMVLPSSHYRplldslpplspsmssfsdpnsGNNTTSVCIDERVVNSLGLSIPSPVNRVTNNNGSRVSENLPPRRGHRRSSSDIPLGFSAMIQSSTQLIPIGSKGAIEKPIQLVKQESEWNNVKKDASRNVEGMGERKSEEDVADDLFNEYMNLENIDTLNSSCTEDKDMDSRASGSKTNGCESSDNEVESRVYGRSSSGILSEKREGIKRSACGDIAPTVRHCRSVSMDSYMGNLPFDDESLRLPPGGQLSPGNPSDGNLAKMSLEFNGEFNDAELKKIWANEKLAEIALSDPKRAKRILANRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLPFLIRAilivhlfvfltlfffREILRGLQVRTMS
Disordered region (IsUnstruct)
******************************************************************VCIDERVVNSLG*************************************************I************************************************FNEYMN************************************************************CGDIAPTVRHCR*********************************************EFNDAELKKIWANEKLAEIA************************************TLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLPFLIRAILIVHLFVFLTLFFFREILRGLQV****
Disordered Region (DISOPRED)
************************************************************************************************************SSSDIPLGFSAMI********************************************************************************************************************************************************************************************************************************YISELEQKVQTLQTEATTLSAQVTILQ******************************FVFLTLFFFREILRGLQVR***
Disordered Region (DISEMBL)
***********PPSHPNNNNPNAISLPFSHMVLPSSHYRPLLDSLPPLSP*************TTSVCIDERVVNSLGLSIPSPVNRVTNN*******************SDIPLGFSAMIQSSTQLIPIGSKGAIEKPIQLVKQESEWNNVKKDAS*************DVADDLFNEYMNLENIDTLNSSCTE**********************************ILSEKREGIKRSACGDIAPTVRHCRSVSMDSYMGNLPFDDESLRLPPGGQLSPGNPSDGNLAKMSLEFNGEFNDAELKKIWANEKLAEIALSDPKRAKRILA************MRYISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLPFLIRAILIVHLFVFLTLFFFREILRGLQVRTMS
Disordered Region (DISPRO)
******************************************************************************************************************LGFSAMIQSSTQLI******************************************DVADDLFNEYMNLENID*****************************************************************************************************************FNDAELKKIWANEKLAEIALSDPKRAKRILANRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLPFLIRAILIVHLFVFLTLFFFREILRGLQVR***
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MSPDSNKRPGIPPSHPNNNNPNAISLPFSHMVLPSSHYRPLLDSLPPLSPSMSSFSDPNSGNNTTSVCIDERVVNSLGLSIPSPVNRVTNNNGSRVSENLPPRRGHRRSSSDIPLGFSAMIQSSTQLIPIGSKGAIEKPIQLVKQESEWNNVKKDASRNVEGMGERKSEEDVADDLFNEYMNLENIDTLNSSCTEDKDMDSRASGSKTNGCESSDNEVESRVYGRSSSGILSEKREGIKRSACGDIAPTVRHCRSVSMDSYMGNLPFDDESLRLPPGGQLSPGNPSDGNLAKMSLEFNGEFNDAELKKIWANEKLAEIALSDPKRAKRILANRQSAARSxxxxxxxxxxxxxxxxxxxxxxxxxxxxVTILQVSIAELILPIAEFLIVLLPFLIRAILIVHLFVFLTLFFFREILRGLQVRTMS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	424	2.2.26 [Sep-21-2011]
Q9MA75	341	Transcription factor VIP1	no	no	0.297	0.369	0.5	1e-23
Q69IL4	380	Transcription factor RF2a	no	no	0.275	0.307	0.549	3e-23
Q04088	398	Probable transcription fa	no	no	0.233	0.248	0.512	3e-22
Q6S4P4	329	Transcription factor RF2b	no	no	0.200	0.258	0.658	2e-21
P14233	242	TGACG-sequence-specific D	N/A	no	0.155	0.272	0.368	0.0002
Q84JK2	285	Protein FD OS=Arabidopsis	no	no	0.125	0.185	0.452	0.0004

>sp|Q9MA75|VIP1_ARATH Transcription factor VIP1 OS=Arabidopsis thaliana GN=VIP1 PE=1 SV=1

 Score =  111 bits (278), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 72/144 (50%), Positives = 88/144 (61%), Gaps = 18/144 (12%)

Query: 251 RHCRSVSMDS-YMGNLPFDDESLRLPPGGQLSPGNPS-------DGNLAKMSLEFNGE-- 300
           RH RS S+DS +  +L   +E       G+   GN         DG ++  S  FN E  
Sbjct: 109 RHVRSFSVDSDFFDDLGVTEEKFIATSSGEKKKGNHHHSRSNSMDGEMSSAS--FNIESI 166

Query: 301 -----FNDAELKKI-WANEKLAEIALSDPKRAKRILANRQSAARSKERKMRYISELEQKV 354
                  D+  K +    ++LAE+AL DPKRAKRILANRQSAARSKERK+RY  ELE+KV
Sbjct: 167 LASVSGKDSGKKNMGMGGDRLAELALLDPKRAKRILANRQSAARSKERKIRYTGELERKV 226

Query: 355 QTLQTEATTLSAQVTILQVSIAEL 378
           QTLQ EATTLSAQVT+LQ   +EL
Sbjct: 227 QTLQNEATTLSAQVTMLQRGTSEL 250

Transcription activator that binds specifically to the VIP1 response elements (VREs) DNA sequence 5'-ACNGCT-3' found in some stress genes (e.g. TRX8 and MYB44), when phosphorylated/activated by MPK3. Required for Agrobacterium VirE2 nuclear import and tumorigenicity. Promotes transient expression of T-DNA in early stages by interacting with VirE2 in complex with the T-DNA and facilitating its translocation to the nucleus, and mediates stable genetic transformation by Agrobacterium by binding H2A histone. Prevents cell differentiation and shoot formation. Limits sulfate utilization efficiency (SUE) and sulfate uptake, especially in low-sulfur conditions.
Arabidopsis thaliana (taxid: 3702)

>sp|Q69IL4|RF2A_ORYSJ Transcription factor RF2a OS=Oryza sativa subsp. japonica GN=RF2a PE=1 SV=1

 Score =  109 bits (273), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 67/122 (54%), Positives = 80/122 (65%), Gaps = 5/122 (4%)

Query: 301 FNDAELKKIWANEKLAEIALSDPKRAKRILANRQSAARSKERKMRYISELEQKVQTLQTE 360
            + AE KK  +  KLAE+AL DPKRAKRI ANRQSAARSKERKMRYI+ELE+KVQTLQTE
Sbjct: 160 MSSAEAKKAVSAAKLAELALVDPKRAKRIWANRQSAARSKERKMRYIAELERKVQTLQTE 219

Query: 361 ATTLSAQVTILQVSIAELILPIAEFLIVLLPFLIRAILIVHLFVFLTLFFFREILRGLQV 420
           ATTLSAQ+ +LQ   + L    +E  + L     +    VHL   L      E+ R L+V
Sbjct: 220 ATTLSAQLALLQRDTSGLTTENSELKLRLQTMEQQ----VHLQDALNDTLKSEVQR-LKV 274

Query: 421 RT 422
            T
Sbjct: 275 AT 276

Transcription factor probably involved in vascular development and shoot tissue organization. Binds to the DNA sequence 5'-CCGAGTGTGCCCCTGG-3' present in the promoter region Box II of the phloem-specific rice tungro bacilliform virus (RTBV) promoter. May regulate tissue-specific expression of the RTBV promoter and virus replication.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q04088|POF21_ARATH Probable transcription factor PosF21 OS=Arabidopsis thaliana GN=POSF21 PE=2 SV=1

 Score =  106 bits (265), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 64/125 (51%), Positives = 76/125 (60%), Gaps = 26/125 (20%)

Query: 248 PTVRHCRSVSMDSYMGNLPFDDESLRLPPGGQLSPGNPSDGNLAKMSLEFNGEFNDAELK 307
           P +RH  S SMD  M                          N+ +M +  N + +  + K
Sbjct: 153 PRIRHQHSQSMDGSM--------------------------NINEMLMSGNEDDSAIDAK 186

Query: 308 KIWANEKLAEIALSDPKRAKRILANRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQ 367
           K  +  KLAE+AL DPKRAKRI ANRQSAARSKERK RYI ELE+KVQTLQTEATTLSAQ
Sbjct: 187 KSMSATKLAELALIDPKRAKRIWANRQSAARSKERKTRYIFELERKVQTLQTEATTLSAQ 246

Query: 368 VTILQ 372
           +T+LQ
Sbjct: 247 LTLLQ 251

Putative transcription factor with an activatory role.

Arabidopsis thaliana (taxid: 3702)

>sp|Q6S4P4|RF2B_ORYSJ Transcription factor RF2b OS=Oryza sativa subsp. japonica GN=RF2b PE=1 SV=1

 Score =  103 bits (257), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 56/85 (65%), Positives = 64/85 (75%)

Query: 305 ELKKIWANEKLAEIALSDPKRAKRILANRQSAARSKERKMRYISELEQKVQTLQTEATTL 364
           E KK    E+L+++A  DPKRAKRILANRQSAARSKERK RYI+ELE+KVQTLQTEATTL
Sbjct: 115 EAKKAMTPEQLSDLAAIDPKRAKRILANRQSAARSKERKARYITELERKVQTLQTEATTL 174

Query: 365 SAQVTILQVSIAELILPIAEFLIVL 389
           SAQ+T+ Q     L    AE  I L
Sbjct: 175 SAQLTLFQRDTTGLSAENAELKIRL 199

Transcription factor probably involved in vascular development and shoot tissue organization. Binds to the DNA sequence 5'-CCGAGTGTGCCCCTGG-3' present in the promoter region Box II of the phloem-specific rice tungro bacilliform virus (RTBV) promoter. May regulate tissue-specific expression of the RTBV promoter and virus replication.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|P14233|TGA1B_TOBAC TGACG-sequence-specific DNA-binding protein TGA-1B (Fragment) OS=Nicotiana tabacum GN=TGA1B PE=2 SV=1

 Score = 47.4 bits (111), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/76 (36%), Positives = 44/76 (57%), Gaps = 10/76 (13%)

Query: 309 IWANEKLAEIALSD-------PKRAKRILANRQSAARSKERKMRYISELEQKVQTLQTEA 361
           I  ++KL  +ALSD        K+  R++ NR+SA  S++RK  Y+ ELE KV+ + +  
Sbjct: 163 INIHQKLTNVALSDNVNNDEDEKKRARLVRNRESAQLSRQRKKHYVEELEDKVRIMHSTI 222

Query: 362 TTLSAQVTILQVSIAE 377
             L+A+V  +   IAE
Sbjct: 223 QDLNAKVAYI---IAE 235

Binds specifically to the DNA sequence 5'-TGACG-3'.

Nicotiana tabacum (taxid: 4097)

>sp|Q84JK2|FD_ARATH Protein FD OS=Arabidopsis thaliana GN=FD PE=1 SV=1

 Score = 46.6 bits (109), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 24/53 (45%), Positives = 34/53 (64%)

Query: 324 KRAKRILANRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQVSIA 376
           +R KR++ NR+SAARS+ RK  Y +ELE +V  LQ E   L  Q   L+++ A
Sbjct: 216 RRHKRMIKNRESAARSRARKQAYTNELELEVAHLQAENARLKRQQDQLKMAAA 268

Transcription factor required for the transition to flowering promoted by FT.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	424
225427794	589	PREDICTED: uncharacterized protein LOC10	0.870	0.626	0.557	1e-106
255543893	574	DNA binding protein, putative [Ricinus c	0.837	0.618	0.574	1e-105
255538856	481	DNA binding protein, putative [Ricinus c	0.808	0.713	0.580	1e-97
449461639	571	PREDICTED: uncharacterized protein LOC10	0.849	0.630	0.533	5e-96
449526371	566	PREDICTED: uncharacterized protein LOC10	0.849	0.636	0.533	6e-96
224077964	507	predicted protein [Populus trichocarpa]	0.794	0.664	0.578	5e-95
351722269	525	bZIP transcription factor bZIP28 [Glycin	0.884	0.714	0.526	6e-94
356545029	538	PREDICTED: uncharacterized protein LOC78	0.830	0.654	0.563	1e-93
449529770	554	PREDICTED: uncharacterized LOC101215703,	0.948	0.725	0.487	3e-93
449461635	563	PREDICTED: uncharacterized protein LOC10	0.844	0.635	0.527	4e-92

>gi|225427794|ref|XP_002269363.1| PREDICTED: uncharacterized protein LOC100255631 [Vitis vinifera]

 Score =  392 bits (1006), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 244/438 (55%), Positives = 285/438 (65%), Gaps = 69/438 (15%)

Query: 1   MSPDSNKRPGIPPSHPNNNNPNAISLPFSHMVLPS---------------SHYRPL---- 41
            S DS+KR G PPSHP+   P  IS P+S + +P                SH R L    
Sbjct: 59  FSGDSSKRHGFPPSHPHQIPP--IS-PYSQIPVPRPANQQLVSQNFSPGPSHSRSLSQPS 115

Query: 42  ---LDSLPPLSPSMSSFSDPNSGNNTTS--VCIDERVVNSLGLSIPSPVNRVTNNNGSRV 96
              LDSLPPLSPS    S   S ++  S  + +++R  +S  +  PSP +  +  N  RV
Sbjct: 116 FFSLDSLPPLSPSPYRDSSSTSISDAVSADISMEDRDASSHSVLPPSP-SPFSRGNSMRV 174

Query: 97  SENLPPRRGHRRSSSDIPLGFSAMIQSSTQLIPIGSKGAIE-------------KPIQLV 143
            ENLPPR+ HRRSSSDIP GFS+++QSS  LIP+   GA+E             KP+QLV
Sbjct: 175 GENLPPRKAHRRSSSDIPFGFSSIMQSSPPLIPLRGSGALERSMSGRDNNMAAAKPVQLV 234

Query: 144 KQESEWNNVKKDASRNVEGMGERKSEEDVADDLFNEYMNLENIDTLNSSCTEDK------ 197
           K+ES W   ++    N EGMGERKSE +V DDL + YMNL+NID LNS  TE+K      
Sbjct: 235 KRESSW---ERGGDSNAEGMGERKSEGEVVDDLLSAYMNLDNIDALNSPGTEEKNGTENR 291

Query: 198 -DMDSRASGSKTNGCESSDNEVESRV---------YGRSSSGILSEKREGIKRSACGDIA 247
            D+DSRASG+KTNG +SSDNE ES V          G SSS   +EKREG+KRSA GDIA
Sbjct: 292 EDLDSRASGTKTNGGDSSDNEAESSVNESGNSMQKLGTSSS---AEKREGVKRSAGGDIA 348

Query: 248 PTVRHCRSVSMDSYMGNLPFDDESLRLPPG-----GQLSPGNPSDGNLAKMSLEF-NGEF 301
           PT RH RSVSMDS+MG + F DES +L P      GQLSP N  DGN A  SLEF NGEF
Sbjct: 349 PTTRHYRSVSMDSFMGKMNFGDESPKLLPSPGTRPGQLSPSNSMDGNSATFSLEFGNGEF 408

Query: 302 NDAELKKIWANEKLAEIALSDPKRAKRILANRQSAARSKERKMRYISELEQKVQTLQTEA 361
           + AELKKI ANEKLAEIAL+DPKRAKRILANRQSAARSKERKMRYISELE KVQTLQTEA
Sbjct: 409 SGAELKKIMANEKLAEIALTDPKRAKRILANRQSAARSKERKMRYISELEHKVQTLQTEA 468

Query: 362 TTLSAQVTILQVSIAELI 379
           TTLSAQ+T+LQ   A L 
Sbjct: 469 TTLSAQLTLLQRDSAGLT 486

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255543893|ref|XP_002513009.1| DNA binding protein, putative [Ricinus communis] gi|223548020|gb|EEF49512.1| DNA binding protein, putative [Ricinus communis]

 Score =  387 bits (994), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 248/432 (57%), Positives = 281/432 (65%), Gaps = 77/432 (17%)

Query: 1   MSPDSNKRPGIPPSHPNNNNPNAISLPFSHMVLPS---------------SHYRPL---- 41
            S DS+KR GIPPSHPN   P  IS P+S + +                 +H R L    
Sbjct: 59  FSTDSSKRIGIPPSHPNQIPP--IS-PYSQIPVSRPGNQQMGSQNFSPGPTHSRSLSQPS 115

Query: 42  ----LDSLPPLSP------SMSSFSDPNSGNNTTSVCIDERVVNSLGLSIPSPVNRVTNN 91
               LDSLPPLSP      S +S +DP S    T V ++ER  NS  L  PSP NR    
Sbjct: 116 SFFSLDSLPPLSPAPFRDSSSTSVADPVS----TDVSMEERDANSHSLLPPSPFNR---G 168

Query: 92  NGSRVSENLPPRRGHRRSSSDIPLGFSAMIQSSTQLIPIGSKGAIE------------KP 139
           N SRV+E+LPPR+ HRRS+SDIP G S ++QSS  LIP+   G +E            KP
Sbjct: 169 NASRVAESLPPRKAHRRSNSDIPFGLSYVMQSSPPLIPLRPSGGLERSVSGKENSSVAKP 228

Query: 140 IQLVKQESEWNNVKKDASRNVEGMGERKSEEDVADDLFNEYMNLENIDTLNSSCTEDK-- 197
            QLVK+E E  N         EGMGERKSE +V DDLF+ YMNL+ ID LNSS T+DK  
Sbjct: 229 TQLVKKEWERGNDSI-----AEGMGERKSEGEVVDDLFSAYMNLDTIDALNSSGTDDKNG 283

Query: 198 -----DMDSRASGSKTNGCESSDNEVESRVYGRSSS----GILS--EKREGIKRSACGDI 246
                D+DSRASG+KTNG +SSDNE ES V    SS    G+ S  EKREGIKRSA GDI
Sbjct: 284 NENREDLDSRASGTKTNGGDSSDNEAESSVNESGSSLLRAGVNSSTEKREGIKRSAGGDI 343

Query: 247 APTVRHCRSVSMDSYMGNLPFDDESLRLPPG-----GQLSPGNPSDGNLAKMSLEF-NGE 300
           APT RH RSVSMDS+MG L F DES +LPP      GQLSP N  DGN    SL+F NGE
Sbjct: 344 APTTRHYRSVSMDSFMGKLNFGDESPKLPPSPGSRPGQLSPSNSIDGN--AFSLDFGNGE 401

Query: 301 FNDAELKKIWANEKLAEIALSDPKRAKRILANRQSAARSKERKMRYISELEQKVQTLQTE 360
           F+ AELKKI ANEKLAEIAL+DPKRAKRILANRQSAARSKERKMRYISELE KVQTLQTE
Sbjct: 402 FSGAELKKIMANEKLAEIALTDPKRAKRILANRQSAARSKERKMRYISELEHKVQTLQTE 461

Query: 361 ATTLSAQVTILQ 372
           ATTLSAQ+T+LQ
Sbjct: 462 ATTLSAQLTLLQ 473

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255538856|ref|XP_002510493.1| DNA binding protein, putative [Ricinus communis] gi|223551194|gb|EEF52680.1| DNA binding protein, putative [Ricinus communis]

 Score =  362 bits (930), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 221/381 (58%), Positives = 257/381 (67%), Gaps = 38/381 (9%)

Query: 4   DSNKRPGIPPSHPNNNNPNAISLPFSHMVLPS--SHYRPLLDSLP---PLSPSMSSFSDP 58
           +SNKR G+PPSHPNN      S   SH +     SH R L  S        P +S     
Sbjct: 41  NSNKRIGVPPSHPNNLQVIMASRSNSHNLNRGAFSHSRSLSQSAVFSFDCLPPLSPLPCL 100

Query: 59  NSGNNTTSVCIDERVVNSLGLSIPSPVNRVTNNNGSRVS-ENLPPRRGHRRSSSD-IPLG 116
           +SG+N +   + +  +   GLS PSPV   T  +G +V+ ++LPPRRGHRRS SD +PL 
Sbjct: 101 SSGSNQSDPVLTDISIEDKGLSAPSPV---TATSGLKVNNDSLPPRRGHRRSMSDSVPLA 157

Query: 117 FSAMIQSSTQLIPIGSKGAIEKPIQLVKQESEWNNVKKDASRNVEGMGERKSEEDVADDL 176
           FSAMIQ+S QLIPIG    IEK   LVK E        D   NV+G    KS+ +V DDL
Sbjct: 158 FSAMIQASPQLIPIGKNSGIEKQSALVKHE-------LDGDGNVQG----KSQGEVVDDL 206

Query: 177 FNEYMNLENIDTLNSSCTEDKDMDSRASGSKTNGCESSDNEVESRVYGRSSSGILSEKRE 236
           F+ YMNL++IDTLNSS TEDKD+DSRASG+KTNG ESSDNEVESRV            ++
Sbjct: 207 FSAYMNLDSIDTLNSSGTEDKDLDSRASGTKTNGTESSDNEVESRV------------KD 254

Query: 237 GIKRSACGDIAPTVRHCRSVSMDSYMGNLPFDDESLRLPP----GGQLSPGNPSDGNLAK 292
           G+KRSA GDIA   RH RS+SMDSY+GNL FDDESL+ P     GGQ SP N  DG LA 
Sbjct: 255 GLKRSAGGDIARAPRHSRSLSMDSYIGNLQFDDESLKFPALGLQGGQQSPRNSIDGKLAN 314

Query: 293 MSLEF-NGEFNDAELKKIWANEKLAEIALSDPKRAKRILANRQSAARSKERKMRYISELE 351
            +LEF N EF +AELKKI ANEKL EIA++DPKRAKRILANR SAARSKERK RYI ELE
Sbjct: 315 FNLEFGNSEFTEAELKKIMANEKLTEIAMADPKRAKRILANRLSAARSKERKTRYILELE 374

Query: 352 QKVQTLQTEATTLSAQVTILQ 372
           QKVQTLQTEATTLS QVT+LQ
Sbjct: 375 QKVQTLQTEATTLSTQVTVLQ 395

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449461639|ref|XP_004148549.1| PREDICTED: uncharacterized protein LOC101216189 [Cucumis sativus]

 Score =  357 bits (917), Expect = 5e-96,   Method: Compositional matrix adjust.
 Identities = 225/422 (53%), Positives = 273/422 (64%), Gaps = 62/422 (14%)

Query: 4   DSNKRPGIPPSHPNNNNPNAISLPFSHMVLP----SSHYRPL--------------LDSL 45
           D+++R GIPPS PN+     IS P+S + +       +Y P+              LDSL
Sbjct: 64  DNSRRIGIPPS-PNSPQIPPIS-PYSQIPISRPMNQQNYNPVPTHSRSLSQPSFFSLDSL 121

Query: 46  PPLSPS--MSSFSDPNSGNNTTSVCIDERVVNSLGLSIPSPVNRVTNNNGSRVSENLPPR 103
           PPLSPS    S +  NS   +    +++R  +S  L  PSP  RV   N S++ ++LPPR
Sbjct: 122 PPLSPSPFRESPTTSNSDQVSADTSMEDRDNSSHSLLPPSPYMRV---NSSKMGDSLPPR 178

Query: 104 RGHRRSSSDIPLGFSAMIQSSTQLIPIGSKGAIEKPI-------------QLVKQESEWN 150
           + HRRS+SDIP G S+MIQ S  L+P  S G +E+               Q VK+E   +
Sbjct: 179 KAHRRSNSDIPFGLSSMIQPSP-LLPFNSSGGLERSTSSKENAGLLKPSSQFVKRE---H 234

Query: 151 NVKKDASRNVEGMGERKSEEDVADDLFNEYMNLENIDTLNSSCTEDK-------DMDSRA 203
           +++K    N+EGMGERKS+ D  DDLF+ YMNL++ID  NSS T DK       D+DSR 
Sbjct: 235 SLEKSVDNNLEGMGERKSDGDSVDDLFSAYMNLDHIDLFNSSGTNDKNGHENREDLDSRG 294

Query: 204 SGSKTNGCESSDNEVESRVYGRSSSGIL------SEKREGIKRSACGDIAPTVRHCRSVS 257
           SG+KTNG ESSDNE ES V     S  +      +EKREGIKR+A GDIAPT RH RSVS
Sbjct: 295 SGTKTNGGESSDNEAESSVNESGDSAQMPGLNSSAEKREGIKRTAGGDIAPTTRHYRSVS 354

Query: 258 MDSYMGNLPFDDESLRLPPG------GQLSPGNPSDGNLAKMSLEF-NGEFNDAELKKIW 310
           MDS+MG L F DES ++PP       GQLS  N  DGN A  SLEF NGEF+ AELKKI 
Sbjct: 355 MDSFMGKLQFGDESPKMPPTPPGVRPGQLSSNNLVDGNSAPFSLEFGNGEFSGAELKKIM 414

Query: 311 ANEKLAEIALSDPKRAKRILANRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTI 370
           AN+KLAEIAL+DPKRAKRILANRQSAARSKERKMRYISELE KVQTLQTEATTLSAQ+T+
Sbjct: 415 ANDKLAEIALTDPKRAKRILANRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQLTL 474

Query: 371 LQ 372
           LQ
Sbjct: 475 LQ 476

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449526371|ref|XP_004170187.1| PREDICTED: uncharacterized protein LOC101227308 [Cucumis sativus]

 Score =  357 bits (916), Expect = 6e-96,   Method: Compositional matrix adjust.
 Identities = 225/422 (53%), Positives = 273/422 (64%), Gaps = 62/422 (14%)

Query: 4   DSNKRPGIPPSHPNNNNPNAISLPFSHMVLP----SSHYRPL--------------LDSL 45
           D+++R GIPPS PN+     IS P+S + +       +Y P+              LDSL
Sbjct: 59  DNSRRIGIPPS-PNSPQIPPIS-PYSQIPISRPMNQQNYNPVPTHSRSLSQPSFFSLDSL 116

Query: 46  PPLSPS--MSSFSDPNSGNNTTSVCIDERVVNSLGLSIPSPVNRVTNNNGSRVSENLPPR 103
           PPLSPS    S +  NS   +    +++R  +S  L  PSP  RV   N S++ ++LPPR
Sbjct: 117 PPLSPSPFRESPTTSNSDQVSADTSMEDRDNSSHSLLPPSPYMRV---NSSKMGDSLPPR 173

Query: 104 RGHRRSSSDIPLGFSAMIQSSTQLIPIGSKGAIEKPI-------------QLVKQESEWN 150
           + HRRS+SDIP G S+MIQ S  L+P  S G +E+               Q VK+E   +
Sbjct: 174 KAHRRSNSDIPFGLSSMIQPSP-LLPFNSSGGLERSTSSKENAGLLKPSSQFVKRE---H 229

Query: 151 NVKKDASRNVEGMGERKSEEDVADDLFNEYMNLENIDTLNSSCTEDK-------DMDSRA 203
           +++K    N+EGMGERKS+ D  DDLF+ YMNL++ID  NSS T DK       D+DSR 
Sbjct: 230 SLEKSVDNNLEGMGERKSDGDSVDDLFSAYMNLDHIDLFNSSGTNDKNGHENREDLDSRG 289

Query: 204 SGSKTNGCESSDNEVESRVYGRSSSGIL------SEKREGIKRSACGDIAPTVRHCRSVS 257
           SG+KTNG ESSDNE ES V     S  +      +EKREGIKR+A GDIAPT RH RSVS
Sbjct: 290 SGTKTNGGESSDNEAESSVNESGDSAQMPGLNSSAEKREGIKRTAGGDIAPTTRHYRSVS 349

Query: 258 MDSYMGNLPFDDESLRLPPG------GQLSPGNPSDGNLAKMSLEF-NGEFNDAELKKIW 310
           MDS+MG L F DES ++PP       GQLS  N  DGN A  SLEF NGEF+ AELKKI 
Sbjct: 350 MDSFMGKLQFGDESPKMPPTPPGVRPGQLSSNNLVDGNSAPFSLEFGNGEFSGAELKKIM 409

Query: 311 ANEKLAEIALSDPKRAKRILANRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTI 370
           AN+KLAEIAL+DPKRAKRILANRQSAARSKERKMRYISELE KVQTLQTEATTLSAQ+T+
Sbjct: 410 ANDKLAEIALTDPKRAKRILANRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQLTL 469

Query: 371 LQ 372
           LQ
Sbjct: 470 LQ 471

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224077964|ref|XP_002305468.1| predicted protein [Populus trichocarpa] gi|222848432|gb|EEE85979.1| predicted protein [Populus trichocarpa]

 Score =  354 bits (908), Expect = 5e-95,   Method: Compositional matrix adjust.
 Identities = 226/391 (57%), Positives = 262/391 (67%), Gaps = 54/391 (13%)

Query: 21  PNAISLPFSH---MVLPSSHYRPLLDSLPPLSPS--MSSFSDPNSGNNTTSVCIDERVVN 75
           P + SL  +H   +  PSS +   LDSLPPLSP+    S S   S   +T V ++E+   
Sbjct: 3   PQSFSLGPTHSRSLSQPSSFFS--LDSLPPLSPAPFRDSSSPSVSDPISTDVFMEEKDGG 60

Query: 76  SLGLSIPSPVNRVTNNNGSRVSENLPPRRGHRRSSSDIPLGFSAMIQSSTQLIPI-GSKG 134
           S  L  PSP NR    N  RV E+LPPR+ HRRS+SDIP G + ++Q S  LIP  GS G
Sbjct: 61  SHSLLPPSPFNR---GNAPRVVESLPPRKAHRRSNSDIPFGLANVLQCSPPLIPSRGSSG 117

Query: 135 -----------AIEKPIQLVKQESEWNNVKKDASRNVEGMGERKSEEDVADDLFNEYMNL 183
                       + KP Q VK+E  W   ++    N EGMGERKSE +V DDLF+ YMNL
Sbjct: 118 LERSMSGRENLGMAKPAQSVKKE--W---ERGGDSNAEGMGERKSEGEVVDDLFSAYMNL 172

Query: 184 ENIDTLNSSCTEDK-------DMDSRASGSKTNGCESSDNEVESRV---------YGRSS 227
           +NID LNSS T+DK       D+DSRASG+KTNG +SSDNE ES V          G SS
Sbjct: 173 DNIDVLNSSGTDDKNGNENREDLDSRASGTKTNGGDSSDNEAESSVNESGGNLPRAGLSS 232

Query: 228 SGILSEKREGIKRSACGDIAPTVRHCRSVSMDSYMGNLPFDDESLRLPPG-----GQLSP 282
           S   +EKREGIKRSA GDIAPT RH RSVSMDS+MG L F +ES +LPP      GQLSP
Sbjct: 233 S---TEKREGIKRSAGGDIAPTTRHYRSVSMDSFMGKLNFGNESPKLPPSPGTRPGQLSP 289

Query: 283 GNPSDGNLAKMSLEF-NGEFNDAELKKIWANEKLAEIALSDPKRAKRILANRQSAARSKE 341
            +  DGN    SL+F NGEF+ AELKKI ANEKLAEIAL+DPKRAKRILANRQSAARSKE
Sbjct: 290 TDSIDGNA--FSLDFGNGEFSGAELKKIMANEKLAEIALADPKRAKRILANRQSAARSKE 347

Query: 342 RKMRYISELEQKVQTLQTEATTLSAQVTILQ 372
           RKMRYISELE KVQTLQTEATTLSAQ+T+LQ
Sbjct: 348 RKMRYISELEHKVQTLQTEATTLSAQLTLLQ 378

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351722269|ref|NP_001237238.1| bZIP transcription factor bZIP28 [Glycine max] gi|113367236|gb|ABI34675.1| bZIP transcription factor bZIP28 [Glycine max]

 Score =  350 bits (899), Expect = 6e-94,   Method: Compositional matrix adjust.
 Identities = 229/435 (52%), Positives = 275/435 (63%), Gaps = 60/435 (13%)

Query: 10  GIPPSHPNNNNPNAISLPFSHM---------VLPS-------SHYRPL-------LDSLP 46
           GIPPSHP+   P  IS P+SHM          +PS       SH R L       LDSLP
Sbjct: 47  GIPPSHPHQIPP--IS-PYSHMNNQIPVSRPQMPSHSTSPTPSHTRSLSQPSFFSLDSLP 103

Query: 47  PLSPSMSSFSDPNSGNNTTSVCIDERVVNSLGLSIPSPVNRVTNNNGSRVSENLPPRRGH 106
           PLSP   +F + +S ++   V +++R V S      SP+      N S     LPPR+ H
Sbjct: 104 PLSPC--TFRESSSTSDHADVSMEDRDVTSH-----SPLPPFAARNPS-----LPPRKSH 151

Query: 107 RRSSSDIPLGFSAMIQSSTQLIPIGSKGAIEKPIQLVKQESEWNNVKKDASRNVEGMGER 166
           RRS+SDIP GFS ++QSS  LIP+  +  ++    +VK+E+ W +       NVEG GE+
Sbjct: 152 RRSNSDIPFGFSTVLQSSPPLIPLRGREGVKPNSSVVKRETNWEHG------NVEGSGEK 205

Query: 167 KSEE-DVADDLFNEYMNLENIDTLNSSCTEDK-------DMDSRASGSKTNGCESSDNEV 218
           KS E +V DDLF+ YMNL++ DTLNSS T+DK       D+DSRA G+KTNG +SSDNE 
Sbjct: 206 KSPEGEVVDDLFSAYMNLDSFDTLNSSGTDDKNGGENRDDLDSRACGTKTNGGDSSDNEA 265

Query: 219 ESRVYGRSSSGILSEKREGIKRSACGDIAPTVRHCRSVSMDSYMGNLPFDDESLRLPP-- 276
           ES V      G  SEKREG+KRSA G+IAPT RH RSVSMDS++G L F DES +LPP  
Sbjct: 266 ESSVNESGHGG--SEKREGMKRSAGGEIAPTTRHYRSVSMDSFIGKLNFGDESPKLPPSP 323

Query: 277 ---GGQLSPGNPSDGNLAKMSLEF-NGEFNDAELKKIWANEKLAEIALSDPKRAKRILAN 332
              G  +SP    DGN A  SLEF +GEF+  ELKKI ANEKLAEIAL+DPKRAKRILAN
Sbjct: 324 GQRGRLMSPAGGIDGNSAAFSLEFGSGEFSGPELKKIMANEKLAEIALTDPKRAKRILAN 383

Query: 333 RQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLPF 392
           RQSAARSKERKMRYISELE KVQTLQTEATTLSAQ+T+LQ   A L    +E    L   
Sbjct: 384 RQSAARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSAGLTNQNSELKFRLQSM 443

Query: 393 LIRAILIVHLFVFLT 407
             +A L   L   LT
Sbjct: 444 EQQAKLRDALNEALT 458

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356545029|ref|XP_003540948.1| PREDICTED: uncharacterized protein LOC780560 [Glycine max]

 Score =  350 bits (897), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 216/383 (56%), Positives = 257/383 (67%), Gaps = 31/383 (8%)

Query: 42  LDSLPPLSPSMSSFSDPNSGNNTTSVCIDERVVNSLGLSIPSPVNRVTNNNGSRVSENLP 101
           LDSLPPLSPS    S   S +    V +++R V+S  L  PSP +R  NN+    +  LP
Sbjct: 99  LDSLPPLSPSPFRDSSSTSVSEAADVSMEDRDVSSHSLLPPSPFSRTLNNS----NLPLP 154

Query: 102 PRRGHRRSSSDIPLGFSAMIQSSTQLIPIGSKGAIEKPIQLVKQESEWNNVKKDASRNVE 161
           PR+ HRRS+SDIP GFS ++QSS  LIP+ +  +  KP QLVK+E+ W+          E
Sbjct: 155 PRKAHRRSNSDIPFGFSTVLQSSPPLIPLRNPVSA-KPAQLVKRETPWDR---------E 204

Query: 162 GMGERKSEE-DVADDLFNEYMNLENIDTLNSSCTEDK-------DMDSRASGSKTNGCES 213
           G GE+KS E +V DDLF+ YMNL++ D LNSS T+DK       D+DSRASG+KTNG +S
Sbjct: 205 GSGEKKSPEGEVVDDLFSAYMNLDSFDALNSSGTDDKNGGENRDDLDSRASGTKTNGGDS 264

Query: 214 SDNEVESRVYGRSSSGIL---SEKREGIKRSACGDIAPTVRHCRSVSMDSYMGNLPFDDE 270
           SDNE ES V      G+    +EKREG+KRSA G+IAPT RH RSVSMDS++G L FD+E
Sbjct: 265 SDNEAESSVNESGDGGVRQGGNEKREGMKRSAGGEIAPTTRHYRSVSMDSFIGKLNFDEE 324

Query: 271 SLRLPPG-GQ----LSPGNPSDGNLAKMSLEF-NGEFNDAELKKIWANEKLAEIALSDPK 324
           S +LPP  GQ    +SP    DGN A  SLEF NGEF+  ELKKI ANEKLAEIAL DPK
Sbjct: 325 SPKLPPSPGQRSALMSPAGGIDGNSAAFSLEFGNGEFSGPELKKIMANEKLAEIALIDPK 384

Query: 325 RAKRILANRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAE 384
           RAKRILANRQSAARSKERKMRYISELE KVQTLQTEATTLSAQ+T+LQ   A L    +E
Sbjct: 385 RAKRILANRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSAGLTNQNSE 444

Query: 385 FLIVLLPFLIRAILIVHLFVFLT 407
               L     +A L   L   LT
Sbjct: 445 LKFRLQSMEQQAKLRDALNEALT 467

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449529770|ref|XP_004171871.1| PREDICTED: uncharacterized LOC101215703, partial [Cucumis sativus]

 Score =  348 bits (893), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 231/474 (48%), Positives = 282/474 (59%), Gaps = 72/474 (15%)

Query: 4   DSNKRPGIPPSHPNNNNPNAISLPFSHMVLPS-----------SHYRPL-------LDSL 45
           D+N+R GIPP  PN+     IS P+S + +             +H R L       LDSL
Sbjct: 58  DNNRRIGIPPC-PNSPQVPPIS-PYSQIPVSRPMNQHSYNSVPTHSRSLSQPSFFSLDSL 115

Query: 46  PPLSPSMSSFSDPNSGNNTTSVCID----ERVVNSLGLSIPSPVNRVTNNNGSRVSENLP 101
           PPLSPS   F D  S +N+  V  D    +R  +S  L  PSP  R    N S++S+ LP
Sbjct: 116 PPLSPS--PFRDSPSTSNSDQVSADTSMEDRDASSHSLLPPSPYTRA---NSSKMSDALP 170

Query: 102 PRRGHRRSSSDIPLGFSAMIQSSTQLIPIGSKGAIEKPIQ------LVKQESEW----NN 151
           PR+ HRRS+SDIP G S+MIQS   ++P    G +E+         + KQ S++     +
Sbjct: 171 PRKAHRRSNSDIPFGLSSMIQSPP-VLPFSGSGGLERSTSSKENAGIFKQASQFVKREPS 229

Query: 152 VKKDASRNVEGMGERKSEEDVADDLFNEYMNLENIDTLNSSCTEDK-------DMDSRAS 204
           ++K    ++EGMGE+KSE D  DDLF+ YMNL+NID  NSS T DK       D+DSR S
Sbjct: 230 LEKSIDNHMEGMGEKKSEGDTVDDLFSAYMNLDNIDLFNSSVTNDKNGHENREDLDSRGS 289

Query: 205 GSKTNGCESSDNEVESRVYGRSSSGIL------SEKREGIKRSACGDIAPTVRHCRSVSM 258
           G+KT G ESSDNE ES V     +  +      +EKREGIKR+A GDIAP  RH RS+SM
Sbjct: 290 GTKTGG-ESSDNEAESSVNESGDNSQMPGLNSSAEKREGIKRTAGGDIAPNNRHYRSISM 348

Query: 259 DSYMGNLPFDDESLRLPPG------GQLSPGNPSDGNLAKMSLEF-NGEFNDAELKKIWA 311
           DS+MG L F DES ++PP       GQLS  N  DGN    SLEF NGEF+ AELKKI A
Sbjct: 349 DSFMGKLQFGDESPKMPPTPPGIRPGQLSSNNLVDGNSTPFSLEFGNGEFSGAELKKIMA 408

Query: 312 NEKLAEIALSDPKRAKRILANRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTIL 371
           N+KLAEIAL+DPKRAKRILANRQSAARSKERKMRYISELE KVQTLQTEATTLSAQ+T+L
Sbjct: 409 NDKLAEIALTDPKRAKRILANRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQLTLL 468

Query: 372 QVSIAELILPIAEFLIVL-----------LPFLIRAILIVHLFVFLTLFFFREI 414
           Q     L     E    L             +    IL VHLF     +  R++
Sbjct: 469 QRDSVGLTNQNNELKFRLQAMEQQAQLRDAKYFWYVILYVHLFSIFQSYHSRKL 522

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449461635|ref|XP_004148547.1| PREDICTED: uncharacterized protein LOC101215703 [Cucumis sativus]

 Score =  344 bits (883), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 223/423 (52%), Positives = 269/423 (63%), Gaps = 65/423 (15%)

Query: 4   DSNKRPGIPPSHPNNNNPNAISLPFSHMVLPS-----------SHYRPL-------LDSL 45
           D+N+R GIPP  PN+     IS P+S + +             +H R L       LDSL
Sbjct: 58  DNNRRIGIPPC-PNSPQVPPIS-PYSQIPVSRPMNQHSYNSVPTHSRSLSQPSFFSLDSL 115

Query: 46  PPLSPSMSSFSDPNSGNNTTSVCID----ERVVNSLGLSIPSPVNRVTNNNGSRVSENLP 101
           PPLSPS   F D  S +N+  V  D    +R  +S  L  PSP  R    N S++S+ LP
Sbjct: 116 PPLSPS--PFRDSPSTSNSDQVSADTSMEDRDASSHSLLPPSPYTRA---NSSKMSDALP 170

Query: 102 PRRGHRRSSSDIPLGFSAMIQSSTQLIPIGSKGAIEKPIQ------LVKQESEWNNVKKD 155
           PR+ HRRS+SDIP G S+MIQS   ++P    G +E+         + KQ S++  VK++
Sbjct: 171 PRKAHRRSNSDIPFGLSSMIQSPP-VLPFSGSGGLERSTSSKENAGIFKQASQF--VKRE 227

Query: 156 AS------RNVEGMGERKSEEDVADDLFNEYMNLENIDTLNSSCTEDK-------DMDSR 202
            S       ++EGMGE+KSE D  DDLF+ YMNL+NID  NSS T DK       D+DSR
Sbjct: 228 PSLEKSIDNHMEGMGEKKSEGDTVDDLFSAYMNLDNIDLFNSSVTNDKNGHENREDLDSR 287

Query: 203 ASGSKTNGCESSDNEVESRVYGRSSSGIL------SEKREGIKRSACGDIAPTVRHCRSV 256
            SG+KT G ESSDNE ES V     +  +      +EKREGIKR+A GDIAP  RH RS+
Sbjct: 288 GSGTKTGG-ESSDNEAESSVNESGDNSQMPGLNSSAEKREGIKRTAGGDIAPNNRHYRSI 346

Query: 257 SMDSYMGNLPFDDESLRLPPG------GQLSPGNPSDGNLAKMSLEF-NGEFNDAELKKI 309
           SMDS+MG L F DES ++PP       GQLS  N  DGN    SLEF NGEF+ AELKKI
Sbjct: 347 SMDSFMGKLQFGDESPKMPPTPPGIRPGQLSSNNLVDGNSTPFSLEFGNGEFSGAELKKI 406

Query: 310 WANEKLAEIALSDPKRAKRILANRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVT 369
            AN+KLAEIAL+DPKRAKRILANRQSAARSKERKMRYISELE KVQTLQTEATTLSAQ+T
Sbjct: 407 MANDKLAEIALTDPKRAKRILANRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQLT 466

Query: 370 ILQ 372
           +LQ
Sbjct: 467 LLQ 469

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	424
TAIR|locus:2047082	525	AT2G21230 "AT2G21230" [Arabido	0.712	0.575	0.504	1.5e-65
TAIR|locus:2141826	553	AT4G38900 "AT4G38900" [Arabido	0.650	0.499	0.491	2.6e-54
TAIR|locus:2061340	398	AT2G31370 [Arabidopsis thalian	0.202	0.216	0.659	1.5e-23
TAIR|locus:2031123	341	VIP1 "VIRE2-interacting protei	0.301	0.375	0.485	2.9e-23
TAIR|locus:2198856	423	AT1G06070 "AT1G06070" [Arabido	0.191	0.191	0.666	1.6e-22
TAIR|locus:2061908	367	AT2G40620 "AT2G40620" [Arabido	0.266	0.307	0.526	2.6e-21
TAIR|locus:2033123	337	bZIP52 "AT1G06850" [Arabidopsi	0.226	0.284	0.571	7.8e-21
TAIR|locus:2057300	294	UNE4 "unfertilized embryo sac	0.294	0.425	0.408	1.7e-18
TAIR|locus:2056442	262	AT2G13150 [Arabidopsis thalian	0.349	0.564	0.374	1.8e-17
TAIR|locus:2085425	329	BZIP61 [Arabidopsis thaliana (	0.292	0.376	0.361	1.7e-10

TAIR|locus:2047082 AT2G21230 "AT2G21230" [Arabidopsis thaliana (taxid:3702)]

 Score = 667 (239.9 bits), Expect = 1.5e-65, P = 1.5e-65
 Identities = 166/329 (50%), Positives = 215/329 (65%)

Query:    64 TTSVCIDERVVNSLGLSIPSPVNRVTNNNGSRVS---ENLPPRRGHRRSSSDIPLGFSAM 120
             + SV ++E+       S+P     + +++ SR +   ENLPPR+ HRRS+SD+  GFS+M
Sbjct:    99 SVSVSVEEKTGAGFSPSLPPSPFTMCHSSSSRNAGDGENLPPRKSHRRSNSDVTFGFSSM 158

Query:   121 IQSSTQLIPIGSKGAIEKPIQLVKQESEWNNVKKDASRNVEGMGE-RKSEEDVA-DDLFN 178
             +  + +  P+ S   +E+ I   +  S+W+N+ K   R  EG  + RK E + A DD+F 
Sbjct:   159 MSQNQKSPPLSS---LERSIS-GEDTSDWSNLVKKEPR--EGFYKGRKPEVEAAMDDVFT 212

Query:   179 EYMNLENIDTLNSSCTED--------KDMDS-RASGSK-TNGCESSDNEVESRVYGRSSS 228
              YMNL+NID LNS   ED        ++M+S R SG+K TNG  SSD+E +S   G    
Sbjct:   213 AYMNLDNIDVLNSFGGEDGKNGNENVEEMESSRGSGTKKTNGGSSSDSEGDSSASGNVKV 272

Query:   229 GILSEKREGIKRSACGDIAPTVRHCRSVSMDS-YMGNLPFDDES-LRLPPGG--QLSPGN 284
               LS    G+KR A GDIAPT RH RSVSMDS +MG L F DES L+LPP    ++SP N
Sbjct:   273 A-LSSSSSGVKRRAGGDIAPTGRHYRSVSMDSCFMGKLNFGDESSLKLPPSSSAKVSPTN 331

Query:   285 PSDGNLAKMSLEF-NGEFNDAELKKIWANEKLAEIALSDPKRAKRILANRQSAARSKERK 343
               +GN +  S+EF N EF  AE+KKI A+EKLAEI ++DPKR KRILANR SAARSKERK
Sbjct:   332 SGEGNSSAYSVEFGNSEFTAAEMKKIAADEKLAEIVMADPKRVKRILANRVSAARSKERK 391

Query:   344 MRYISELEQKVQTLQTEATTLSAQVTILQ 372
              RY++ELE KVQTLQTEATTLSAQ+T LQ
Sbjct:   392 TRYMAELEHKVQTLQTEATTLSAQLTHLQ 420

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0009737 "response to abscisic acid stimulus" evidence=IDA

GO:0009410 "response to xenobiotic stimulus" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

TAIR|locus:2141826 AT4G38900 "AT4G38900" [Arabidopsis thaliana (taxid:3702)]

 Score = 561 (202.5 bits), Expect = 2.6e-54, P = 2.6e-54
 Identities = 151/307 (49%), Positives = 191/307 (62%)

Query:    89 TNNNGSRVSENLPPRRGHRRSSSDIPLGFSAMIQSSTQLIPIGSKGAI----EKPIQLVK 144
             T+++  RV E+LPPR+ HRRS+SDIP GF++M     + +     G       K    VK
Sbjct:   152 TSSSSLRVGESLPPRKSHRRSNSDIPSGFNSMPLIPPRPLERSFSGGECADWSKSNPFVK 211

Query:   145 QESEWNNVKKDASRNVEGMGERKSEEDVADDLFNEYMNLENIDTLNSSCTEDKDMDS-RA 203
             +ES   + +++     E M +  S     +++  + +N    D   +      DM+S RA
Sbjct:   212 KES---SCEREGVGEREAMDDLFSAYMNLENI--DVLNSSEADDSKNGNENRDDMESSRA 266

Query:   204 SGSKTNGCES---SDNEVESRVYGRSSSGILSEKREGIKRSACG-DIAPTVRHCRSVSMD 259
             SG+KTNG ++   S +  ES     +SSG   EKRE +KR A G DIAPT RH RSVS+D
Sbjct:   267 SGTKTNGSDTEGESSSVNESANNNMNSSG---EKRESVKRRAAGGDIAPTTRHYRSVSVD 323

Query:   260 S-YMGNLPFDDESLRLPPG-GQLS----PGNPSDGNL-AKMSLEFN-GEFNDAELKKIWA 311
             S +M  L F DESL+ PP  G +S    P N  DGN  A  S+EFN GEF  AE+KKI A
Sbjct:   324 SCFMEKLSFGDESLKPPPSPGSMSRKVSPTNSVDGNSGAAFSIEFNNGEFTAAEMKKIMA 383

Query:   312 NEKLAEIALSDPKRAKR------ILANRQSAARSKERKMRYISELEQKVQTLQTEATTLS 365
             N+KLAE+A+SDPKR KR      ILANRQSAARSKERKMRYI ELE KVQTLQTEATTLS
Sbjct:   384 NDKLAEMAMSDPKRVKRNDPLFRILANRQSAARSKERKMRYIVELEHKVQTLQTEATTLS 443

Query:   366 AQVTILQ 372
             AQ+T+LQ
Sbjct:   444 AQLTLLQ 450

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0005829 "cytosol" evidence=IDA

GO:0009410 "response to xenobiotic stimulus" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

TAIR|locus:2061340 AT2G31370 [Arabidopsis thaliana (taxid:3702)]

 Score = 257 (95.5 bits), Expect = 1.5e-23, Sum P(2) = 1.5e-23
 Identities = 58/88 (65%), Positives = 69/88 (78%)

Query:   287 DG--NLAKMSLEFNGEFNDAELKKIWANEKLAEIALSDPKRAKRILANRQSAARSKERKM 344
             DG  N+ +M +  N + +  + KK  +  KLAE+AL DPKRAKRI ANRQSAARSKERK 
Sbjct:   164 DGSMNINEMLMSGNEDDSAIDAKKSMSATKLAELALIDPKRAKRIWANRQSAARSKERKT 223

Query:   345 RYISELEQKVQTLQTEATTLSAQVTILQ 372
             RYI ELE+KVQTLQTEATTLSAQ+T+LQ
Sbjct:   224 RYIFELERKVQTLQTEATTLSAQLTLLQ 251

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;IDA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0003677 "DNA binding" evidence=ISS

GO:0009410 "response to xenobiotic stimulus" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

TAIR|locus:2031123 VIP1 "VIRE2-interacting protein 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 268 (99.4 bits), Expect = 2.9e-23, P = 2.9e-23
 Identities = 69/142 (48%), Positives = 85/142 (59%)

Query:   251 RHCRSVSMDS-YMGNLPFDDESLRLPPGGQLSPGN-------PSDGNLAKMSLEFNGEF- 301
             RH RS S+DS +  +L   +E       G+   GN         DG ++  S        
Sbjct:   109 RHVRSFSVDSDFFDDLGVTEEKFIATSSGEKKKGNHHHSRSNSMDGEMSSASFNIESILA 168

Query:   302 ----NDAELKKI-WANEKLAEIALSDPKRAKRILANRQSAARSKERKMRYISELEQKVQT 356
                  D+  K +    ++LAE+AL DPKRAKRILANRQSAARSKERK+RY  ELE+KVQT
Sbjct:   169 SVSGKDSGKKNMGMGGDRLAELALLDPKRAKRILANRQSAARSKERKIRYTGELERKVQT 228

Query:   357 LQTEATTLSAQVTILQVSIAEL 378
             LQ EATTLSAQVT+LQ   +EL
Sbjct:   229 LQNEATTLSAQVTMLQRGTSEL 250

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;IDA

GO:0005634 "nucleus" evidence=ISM;IDA;IMP

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA;IDA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0045596 "negative regulation of cell differentiation" evidence=IDA

GO:0009294 "DNA mediated transformation" evidence=IDA

GO:0051170 "nuclear import" evidence=IDA

GO:0051019 "mitogen-activated protein kinase binding" evidence=IPI

GO:0008272 "sulfate transport" evidence=IMP

GO:0009970 "cellular response to sulfate starvation" evidence=IMP

GO:0009410 "response to xenobiotic stimulus" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=RCA

TAIR|locus:2198856 AT1G06070 "AT1G06070" [Arabidopsis thaliana (taxid:3702)]

 Score = 254 (94.5 bits), Expect = 1.6e-22, Sum P(2) = 1.6e-22
 Identities = 54/81 (66%), Positives = 67/81 (82%)

Query:   292 KMSLEFNGEFNDAELKKIWANEKLAEIALSDPKRAKRILANRQSAARSKERKMRYISELE 351
             +M +  N + +  + KK  +  KL+E+AL DPKRAKRI ANRQSAARSKERKMRYI+ELE
Sbjct:   180 EMLMSGNEDVSGVDSKKAISAAKLSELALIDPKRAKRIWANRQSAARSKERKMRYIAELE 239

Query:   352 QKVQTLQTEATTLSAQVTILQ 372
             +KVQTLQTEAT+LSAQ+T+LQ
Sbjct:   240 RKVQTLQTEATSLSAQLTLLQ 260

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0009410 "response to xenobiotic stimulus" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

TAIR|locus:2061908 AT2G40620 "AT2G40620" [Arabidopsis thaliana (taxid:3702)]

 Score = 259 (96.2 bits), Expect = 2.6e-21, P = 2.6e-21
 Identities = 60/114 (52%), Positives = 74/114 (64%)

Query:   259 DSYMGNLPFDDESLRLPPGGQLSPGNPSDGNLAKMSLEFNGEFNDAELKKIWANEKLAEI 318
             DS   + P  D       GG    GN    +   +S++ +      E KK  A +KLAE+
Sbjct:    86 DSAGPSAPRSDNPFSAENGGA-EAGNSRPRHRHSLSVDGSSTLESIEAKKAMAPDKLAEL 144

Query:   319 ALSDPKRAKRILANRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQ 372
              + DPKRAKRI+ANRQSAARSKERK RYI ELE+KVQTLQTEATTLSAQ+++ Q
Sbjct:   145 WVVDPKRAKRIIANRQSAARSKERKARYILELERKVQTLQTEATTLSAQLSLFQ 198

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

TAIR|locus:2033123 bZIP52 "AT1G06850" [Arabidopsis thaliana (taxid:3702)]

 Score = 240 (89.5 bits), Expect = 7.8e-21, Sum P(2) = 7.8e-21
 Identities = 56/98 (57%), Positives = 67/98 (68%)

Query:   275 PPGGQLSPGNPSDGNLAKMSLEFNGEFNDAELKKIWANEKLAEIALSDPKRAKRILANRQ 334
             PP     P +    ++      + G+  DA  KK    EKL+E+   DPKRAKRILANRQ
Sbjct:   103 PPPPSSRPRHRHSNSVDAGCAMYAGDIMDA--KKAMPPEKLSELWNIDPKRAKRILANRQ 160

Query:   335 SAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQ 372
             SAARSKERK RYI ELE+KVQ+LQTEATTLSAQ+T+ Q
Sbjct:   161 SAARSKERKARYIQELERKVQSLQTEATTLSAQLTLYQ 198

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

TAIR|locus:2057300 UNE4 "unfertilized embryo sac 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 226 (84.6 bits), Expect = 1.7e-18, P = 1.7e-18
 Identities = 58/142 (40%), Positives = 86/142 (60%)

Query:   237 GIKRSACGDIAPTVRHCRSVSMDSYMGNLPFDDESLRLPPGGQLSPGN-PS----DGNLA 291
             G+K+ A  DI P  RH RSVSMDS + +L      L+L P    SPGN PS    DG+  
Sbjct:    68 GVKKIAPKDIGPLKRHYRSVSMDSCLSDL------LKLTP----SPGNTPSSRLVDGDQN 117

Query:   292 KMSLEFNG-EFNDAELKKIWANEKLAEIALSDPKRAKRILANRQSAARSKERKMRYISEL 350
                LEF+  ++ D EL KI  + KL E+AL DPK  +RIL NR+SAA  K++K++Y+  L
Sbjct:   118 ASRLEFDANDYTDDELNKIAKSNKLKEVAL-DPKEVRRILKNRESAAHLKQKKLQYMINL 176

Query:   351 EQKVQTLQTEATTLSAQVTILQ 372
             E ++  ++ E  ++  ++ +L+
Sbjct:   177 EHRINFVENENASIFEKIKLLE 198

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0009567 "double fertilization forming a zygote and endosperm" evidence=IMP

GO:0009410 "response to xenobiotic stimulus" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

TAIR|locus:2056442 AT2G13150 [Arabidopsis thaliana (taxid:3702)]

 Score = 217 (81.4 bits), Expect = 1.8e-17, P = 1.8e-17
 Identities = 61/163 (37%), Positives = 91/163 (55%)

Query:   212 ESSDNEVESRVYGRSSSGILSEKREGIKRSACGDIAPTVRHCRSVSMDSYMGNLPFDDES 271
             ES D+ +  RV  +S    L  KR   K     DI P  RH RS+S+DS + +L      
Sbjct:    50 ESRDSSI--RVKKKSLLPPLCVKRRAPK----DDIEPFKRHYRSLSVDSCLSDL------ 97

Query:   272 LRLPPG-GQLSPGNPSDGNLAKMSLEFNGE-FNDAELKKIWANEKLAEIALSDPKRAKRI 329
             L+LPP    +S     DG      LEF+   + D EL KI  + KL E+A SDPK  +RI
Sbjct:    98 LKLPPSPNNVSSSRSVDGEQNASELEFDTSVYTDDELNKIAKSTKLKEVA-SDPKEVRRI 156

Query:   330 LANRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQ 372
             L N++SAARSK++K++Y+  LE K+  L+ +  ++  ++ +L+
Sbjct:   157 LKNQESAARSKQKKLQYMINLELKINFLENKNASIFEKIKLLE 199

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0009410 "response to xenobiotic stimulus" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

TAIR|locus:2085425 BZIP61 [Arabidopsis thaliana (taxid:3702)]

 Score = 172 (65.6 bits), Expect = 1.7e-10, P = 1.7e-10
 Identities = 51/141 (36%), Positives = 74/141 (52%)

Query:   244 GDIAPTVRHCRSVSMDSYMGNLPFDDESLRLPPGGQLSPGNPSDGNLAKMSLEFNGEFND 303
             G++ PT R   + S  S   +L  DD +   PP       +  D N+A  +      +N+
Sbjct:   115 GNVGPT-RSSSNTSTPSDHNSLSDDDNNKEAPPSDH---DHHMDNNVANQNNAAGNNYNE 170

Query:   304 A-ELKKIW---------ANEKLAEIA---LSDPKRAKRILANRQSAARSKERKMRYISEL 350
             + E++            AN+     +   + DPKR KRILANRQSA RS+ RK++YISEL
Sbjct:   171 SDEVQSQCKTEPQDGPSANQNSGGSSGNRIHDPKRVKRILANRQSAQRSRVRKLQYISEL 230

Query:   351 EQKVQTLQTEATTLSAQVTIL 371
             E+ V +LQTE + LS +V  L
Sbjct:   231 ERSVTSLQTEVSVLSPRVAFL 251

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0003677 "DNA binding" evidence=IDA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

GO:0009410 "response to xenobiotic stimulus" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00041262 hypothetical protein (507 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	424
smart00338	65	smart00338, BRLZ, basic region leucin zipper	2e-13
pfam00170	64	pfam00170, bZIP_1, bZIP transcription factor	2e-06
pfam07716	54	pfam07716, bZIP_2, Basic region leucine zipper	3e-05
cd12193	54	cd12193, B_zip1, basic leucine zipper DNA-binding	3e-04

>gnl|CDD|197664 smart00338, BRLZ, basic region leucin zipper

 Score = 64.9 bits (159), Expect = 2e-13
 Identities = 23/57 (40%), Positives = 35/57 (61%)

Query: 322 DPKRAKRILANRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQVSIAEL 378
           D KR +R   NR++A RS+ERK   I ELE+KV+ L+ E   L  ++  L+  + +L
Sbjct: 3   DEKRRRRRERNREAARRSRERKKAEIEELERKVEQLEAENERLKKEIERLRRELEKL 59

Length = 65

>gnl|CDD|201054 pfam00170, bZIP_1, bZIP transcription factor

 Score = 44.6 bits (106), Expect = 2e-06
 Identities = 21/41 (51%), Positives = 28/41 (68%)

Query: 324 KRAKRILANRQSAARSKERKMRYISELEQKVQTLQTEATTL 364
           KR +R   NR++A RS+ RK  YI ELE+KV+ L+ E  TL
Sbjct: 5   KRERRRQKNREAARRSRLRKKAYIEELEEKVKELEAENKTL 45

The Pfam entry includes the basic region and the leucine zipper region. Length = 64

>gnl|CDD|203738 pfam07716, bZIP_2, Basic region leucine zipper

 Score = 41.1 bits (97), Expect = 3e-05
 Identities = 18/52 (34%), Positives = 30/52 (57%), Gaps = 1/52 (1%)

Query: 321 SDPKRAKRILANRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQ 372
            D  R +R   N ++A RS+E+K +   ELE++V+ L+ E   L  +V  L+
Sbjct: 2   DDEYRDRRRR-NNEAARRSREKKKQREEELEERVKELEEENAQLRQKVEQLE 52

Length = 54

>gnl|CDD|213400 cd12193, B_zip1, basic leucine zipper DNA-binding and multimerization region of GCN4 and related proteins

 Score = 38.1 bits (89), Expect = 3e-04
 Identities = 18/45 (40%), Positives = 29/45 (64%)

Query: 324 KRAKRILANRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQV 368
            RA++   NR++A RS+ RKM  + +LE KV+ L +E + L  +V
Sbjct: 2   PRARKRARNREAARRSRARKMERMKQLEDKVEELTSENSDLEDEV 46

Basic leucine zipper (bZIP) transcription factors act in networks of homo- and hetero-dimers in the regulation in a diverse set of cellular pathways. Classical leucine zippers have alpha helices with leucine residues 7 amino acids apart, which stabilize dimerization with a parallel leucine zipper domain. Dimerization creates a pair of basic regions that bind DNA and undergo conformational change. GCN4 was identified in Saccharomyces cerevisiae from mutations in a deficiency in activation with the general amino acid control pathway. GCN4 encodes a trans-activator of amino acid biosynthetic genes containing 2 acidic activation domains and a C-terminal bZIP domain, comprised of a basic alpha-helical DNA-binding region and a coiled-coil dimerization region. Length = 54

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	424
smart00338	65	BRLZ basic region leucin zipper.	99.41
PF00170	64	bZIP_1: bZIP transcription factor cAMP response el	99.28
KOG4005	292	consensus Transcription factor XBP-1 [Transcriptio	99.27
KOG4343	655	consensus bZIP transcription factor ATF6 [Transcri	99.11
PF07716	54	bZIP_2: Basic region leucine zipper; InterPro: IPR	99.05
KOG0709	472	consensus CREB/ATF family transcription factor [Tr	98.95
KOG3584	348	consensus cAMP response element binding protein an	98.75
PF03131	92	bZIP_Maf: bZIP Maf transcription factor; InterPro:	98.14
KOG0837	279	consensus Transcriptional activator of the JUN fam	97.71
KOG4571	294	consensus Activating transcription factor 4 [Trans	97.36
KOG4196	135	consensus bZIP transcription factor MafK [Transcri	97.2
PF06005	72	DUF904: Protein of unknown function (DUF904); Inte	97.02
KOG3119	269	consensus Basic region leucine zipper transcriptio	96.72
PRK13169	110	DNA replication intiation control protein YabA; Re	96.69
PF06156	107	DUF972: Protein of unknown function (DUF972); Inte	96.59
KOG3863	604	consensus bZIP transcription factor NRF1 [Transcri	96.2
KOG4005	292	consensus Transcription factor XBP-1 [Transcriptio	95.61
TIGR02894	161	DNA_bind_RsfA transcription factor, RsfA family. I	95.2
COG4467	114	Regulator of replication initiation timing [Replic	95.07
PF08614	194	ATG16: Autophagy protein 16 (ATG16); InterPro: IPR	94.88
TIGR02449	65	conserved hypothetical protein TIGR02449. Members	94.56
PF04102	69	SlyX: SlyX; InterPro: IPR007236 The SlyX protein h	94.53
PRK00295	68	hypothetical protein; Provisional	94.49
COG4942	420	Membrane-bound metallopeptidase [Cell division and	94.41
PRK00736	68	hypothetical protein; Provisional	94.35
PRK15422	79	septal ring assembly protein ZapB; Provisional	94.35
PF10473	140	CENP-F_leu_zip: Leucine-rich repeats of kinetochor	94.21
PRK02793	72	phi X174 lysis protein; Provisional	94.17
PRK04325	74	hypothetical protein; Provisional	94.13
PRK04406	75	hypothetical protein; Provisional	93.88
PRK02119	73	hypothetical protein; Provisional	93.88
PF11559	151	ADIP: Afadin- and alpha -actinin-Binding; InterPro	93.87
PF10224	80	DUF2205: Predicted coiled-coil protein (DUF2205);	93.86
COG1579	239	Zn-ribbon protein, possibly nucleic acid-binding [	93.82
PF13747	89	DUF4164: Domain of unknown function (DUF4164)	93.79
PHA03155	115	hypothetical protein; Provisional	93.7
PRK10884	206	SH3 domain-containing protein; Provisional	93.63
TIGR02449	65	conserved hypothetical protein TIGR02449. Members	93.54
PHA03162	135	hypothetical protein; Provisional	93.42
PF09726	697	Macoilin: Transmembrane protein; InterPro: IPR0191	93.33
PRK00846	77	hypothetical protein; Provisional	93.3
PF11932	251	DUF3450: Protein of unknown function (DUF3450); In	93.3
PF06005	72	DUF904: Protein of unknown function (DUF904); Inte	93.04
PRK09039	343	hypothetical protein; Validated	93.02
PRK10884	206	SH3 domain-containing protein; Provisional	92.95
COG3074	79	Uncharacterized protein conserved in bacteria [Fun	92.91
PRK11637	428	AmiB activator; Provisional	92.86
PRK11637	428	AmiB activator; Provisional	92.76
PF11559	151	ADIP: Afadin- and alpha -actinin-Binding; InterPro	92.73
PRK13729	475	conjugal transfer pilus assembly protein TraB; Pro	92.64
PF06156	107	DUF972: Protein of unknown function (DUF972); Inte	92.46
PF07989	75	Microtub_assoc: Microtubule associated; InterPro:	92.29
PF06785	401	UPF0242: Uncharacterised protein family (UPF0242);	92.07
PF05812	118	Herpes_BLRF2: Herpesvirus BLRF2 protein; InterPro:	92.0
PF14662	193	CCDC155: Coiled-coil region of CCDC155	91.83
PF08537	323	NBP1: Fungal Nap binding protein NBP1; InterPro: I	91.26
PF11932	251	DUF3450: Protein of unknown function (DUF3450); In	91.24
TIGR03752	472	conj_TIGR03752 integrating conjugative element pro	91.2
COG3074	79	Uncharacterized protein conserved in bacteria [Fun	91.09
PF15070	617	GOLGA2L5: Putative golgin subfamily A member 2-lik	90.82
PF14197	69	Cep57_CLD_2: Centrosome localisation domain of PPC	90.81
PF04880	166	NUDE_C: NUDE protein, C-terminal conserved region;	90.79
PF07888	546	CALCOCO1: Calcium binding and coiled-coil domain (	90.68
PF10805	106	DUF2730: Protein of unknown function (DUF2730); In	90.42
PRK13169	110	DNA replication intiation control protein YabA; Re	90.24
PF14662	193	CCDC155: Coiled-coil region of CCDC155	90.13
KOG0243	1041	consensus Kinesin-like protein [Cytoskeleton]	90.11
PF05266	190	DUF724: Protein of unknown function (DUF724); Inte	89.93
PF10186	302	Atg14: UV radiation resistance protein and autopha	89.41
PF12325	120	TMF_TATA_bd: TATA element modulatory factor 1 TATA	89.37
PF02183	45	HALZ: Homeobox associated leucine zipper; InterPro	89.35
PF13851	201	GAS: Growth-arrest specific micro-tubule binding	89.33
COG2433	652	Uncharacterized conserved protein [Function unknow	89.14
TIGR03752	472	conj_TIGR03752 integrating conjugative element pro	89.02
COG1579	239	Zn-ribbon protein, possibly nucleic acid-binding [	88.99
KOG1414	395	consensus Transcriptional activator FOSB/c-Fos and	88.96
PF07200	150	Mod_r: Modifier of rudimentary (Mod(r)) protein; I	88.86
KOG0288	459	consensus WD40 repeat protein TipD [General functi	88.57
COG2900	72	SlyX Uncharacterized protein conserved in bacteria	88.54
KOG4360	596	consensus Uncharacterized coiled coil protein [Fun	88.41
PF08614	194	ATG16: Autophagy protein 16 (ATG16); InterPro: IPR	88.38
PF05266	190	DUF724: Protein of unknown function (DUF724); Inte	88.33
PF02183	45	HALZ: Homeobox associated leucine zipper; InterPro	87.99
PF12718	143	Tropomyosin_1: Tropomyosin like; InterPro: IPR0005	87.89
KOG4643	1195	consensus Uncharacterized coiled-coil protein [Fun	87.84
PRK03918	880	chromosome segregation protein; Provisional	87.66
KOG0995	581	consensus Centromere-associated protein HEC1 [Cell	87.57
PF10805	106	DUF2730: Protein of unknown function (DUF2730); In	87.47
KOG0982	502	consensus Centrosomal protein Nuf [Cell cycle cont	87.42
KOG0250	1074	consensus DNA repair protein RAD18 (SMC family pro	87.22
PF04849	306	HAP1_N: HAP1 N-terminal conserved region; InterPro	86.87
PF14197	69	Cep57_CLD_2: Centrosome localisation domain of PPC	86.86
PF08172	248	CASP_C: CASP C terminal; InterPro: IPR012955 This	86.85
PF12325	120	TMF_TATA_bd: TATA element modulatory factor 1 TATA	86.48
KOG0946	970	consensus ER-Golgi vesicle-tethering protein p115	86.37
PF04111	314	APG6: Autophagy protein Apg6; InterPro: IPR007243	86.28
KOG1103	561	consensus Predicted coiled-coil protein [Function	86.25
PRK13922	276	rod shape-determining protein MreC; Provisional	86.2
TIGR00219	283	mreC rod shape-determining protein MreC. MreC (mur	85.71
PF09726	697	Macoilin: Transmembrane protein; InterPro: IPR0191	85.65
KOG1962	216	consensus B-cell receptor-associated protein and r	85.5
PF08317	325	Spc7: Spc7 kinetochore protein; InterPro: IPR01325	85.38
PF03962	188	Mnd1: Mnd1 family; InterPro: IPR005647 This family	85.11
COG3883	265	Uncharacterized protein conserved in bacteria [Fun	84.98
PF00038	312	Filament: Intermediate filament protein; InterPro:	84.85
KOG0980	980	consensus Actin-binding protein SLA2/Huntingtin-in	84.81
PF10211	189	Ax_dynein_light: Axonemal dynein light chain; Inte	84.64
PF10481	307	CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR0	84.59
PF02403	108	Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal dom	84.43
PRK05431	425	seryl-tRNA synthetase; Provisional	84.23
PF04111	314	APG6: Autophagy protein Apg6; InterPro: IPR007243	84.22
PRK10698	222	phage shock protein PspA; Provisional	84.0
PF04849	306	HAP1_N: HAP1 N-terminal conserved region; InterPro	84.0
PF05103	131	DivIVA: DivIVA protein; InterPro: IPR007793 The Ba	83.99
TIGR02977	219	phageshock_pspA phage shock protein A. Members of	83.66
PF09730	717	BicD: Microtubule-associated protein Bicaudal-D; I	83.47
PF12709	87	Kinetocho_Slk19: Central kinetochore-associated; I	83.47
PF05667	594	DUF812: Protein of unknown function (DUF812); Inte	83.43
COG4026	290	Uncharacterized protein containing TOPRIM domain,	83.33
PF07106	169	TBPIP: Tat binding protein 1(TBP-1)-interacting pr	83.29
PF15035	182	Rootletin: Ciliary rootlet component, centrosome c	83.21
smart00338	65	BRLZ basic region leucin zipper.	83.17
PF06216	389	RTBV_P46: Rice tungro bacilliform virus P46 protei	82.7
PF12718	143	Tropomyosin_1: Tropomyosin like; InterPro: IPR0005	82.64
PF04728	56	LPP: Lipoprotein leucine-zipper; InterPro: IPR0068	82.61
PF09728	309	Taxilin: Myosin-like coiled-coil protein; InterPro	82.44
PRK15422	79	septal ring assembly protein ZapB; Provisional	82.41
PRK00888	105	ftsB cell division protein FtsB; Reviewed	82.41
PF08317	325	Spc7: Spc7 kinetochore protein; InterPro: IPR01325	82.23
PF04012	221	PspA_IM30: PspA/IM30 family; InterPro: IPR007157 T	82.16
PF06632	342	XRCC4: DNA double-strand break repair and V(D)J re	82.14
TIGR02894	161	DNA_bind_RsfA transcription factor, RsfA family. I	82.09
KOG0977	546	consensus Nuclear envelope protein lamin, intermed	81.83
KOG4643	1195	consensus Uncharacterized coiled-coil protein [Fun	81.68
PF00170	64	bZIP_1: bZIP transcription factor cAMP response el	81.57
PRK10803	263	tol-pal system protein YbgF; Provisional	81.56
PF14915	305	CCDC144C: CCDC144C protein coiled-coil region	81.34
PF05837	106	CENP-H: Centromere protein H (CENP-H); InterPro: I	81.02
PF09304	107	Cortex-I_coil: Cortexillin I, coiled coil; InterPr	80.92
KOG0996	1293	consensus Structural maintenance of chromosome pro	80.73
PRK10803	263	tol-pal system protein YbgF; Provisional	80.63
KOG1899	861	consensus LAR transmembrane tyrosine phosphatase-i	80.52
cd07666	243	BAR_SNX7 The Bin/Amphiphysin/Rvs (BAR) domain of S	80.5
PF09744	158	Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; Inte	80.46
KOG1029	1118	consensus Endocytic adaptor protein intersectin [S	80.44
PF04340	225	DUF484: Protein of unknown function, DUF484; Inter	80.16
TIGR00414	418	serS seryl-tRNA synthetase. This model represents	80.02

>smart00338 BRLZ basic region leucin zipper

Probab=99.41  E-value=1.2e-12  Score=101.81  Aligned_cols=63  Identities=37%  Similarity=0.493  Sum_probs=58.7

Q ss_pred             cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471          321 SDPKRAKRILANRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIA  383 (424)
Q Consensus       321 ~DpKR~RRiLkNRESAqRSReRKK~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~  383 (424)
                      .|+|+.||+++||+||+++|+||+.|+.+||.+|+.|+.+|..|..++..|+.++..|..++.
T Consensus         2 ~~~k~~rR~~rNR~aA~~~R~rKk~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~~~   64 (65)
T smart00338        2 EDEKRRRRRERNREAARRSRERKKAEIEELERKVEQLEAENERLKKEIERLRRELEKLKSELE   64 (65)
T ss_pred             ccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            478999999999999999999999999999999999999999999999999888888877653

>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization

Probab=99.28  E-value=2.9e-11  Score=93.98  Aligned_cols=62  Identities=37%  Similarity=0.518  Sum_probs=57.1

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471          322 DPKRAKRILANRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIA  383 (424)
Q Consensus       322 DpKR~RRiLkNRESAqRSReRKK~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~  383 (424)
                      +.|+.+|+++||+||+++|+||+.|+.+||.+|..|+.+|..|..++..|..++..|..+|.
T Consensus         3 ~~k~~~rr~rNR~AAr~~R~RKk~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~e~~   64 (64)
T PF00170_consen    3 EDKRERRRERNREAARRSRQRKKQYIEELEEKVEELESENEELKKELEQLKKEIQSLKSENH   64 (64)
T ss_dssp             --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            46788999999999999999999999999999999999999999999999999999888873

; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....

>KOG4005 consensus Transcription factor XBP-1 [Transcription]

Probab=99.27  E-value=3.9e-11  Score=116.29  Aligned_cols=74  Identities=23%  Similarity=0.235  Sum_probs=69.6

Q ss_pred             cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471          321 SDPKRAKRILANRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLPFLI  394 (424)
Q Consensus       321 ~DpKR~RRiLkNRESAqRSReRKK~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqaLEQ  394 (424)
                      -++|-.||+|+||.+||.+|.|||+.++++|..|..|..||..|..+...|++.++.|+.+|+||..+|+.+.|
T Consensus        66 ~EEK~~RrKLKNRVAAQtaRDrKKaRm~eme~~i~dL~een~~L~~en~~Lr~~n~~L~~~n~el~~~le~~~~  139 (292)
T KOG4005|consen   66 WEEKVQRRKLKNRVAAQTARDRKKARMEEMEYEIKDLTEENEILQNENDSLRAINESLLAKNHELDSELELLRQ  139 (292)
T ss_pred             HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            46889999999999999999999999999999999999999999999999999999999999999999865443

>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]

Probab=99.11  E-value=1.1e-10  Score=122.80  Aligned_cols=64  Identities=30%  Similarity=0.463  Sum_probs=61.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471          323 PKRAKRILANRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFL  386 (424)
Q Consensus       323 pKR~RRiLkNRESAqRSReRKK~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK  386 (424)
                      -||..|||+||+||+.||+|||+|+.-||.+++.|..||..|+++...|.++...|..||.+||
T Consensus       280 ~krqQRmIKNResA~~SRkKKKEy~~~Le~rLq~ll~Ene~Lk~ENatLk~qL~~l~~En~~~k  343 (655)
T KOG4343|consen  280 LKRQQRMIKNRESACQSRKKKKEYMLGLEARLQALLSENEQLKKENATLKRQLDELVSENQRLK  343 (655)
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhcCcccc
Confidence            3677799999999999999999999999999999999999999999999999999999999996

>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization

Probab=99.05  E-value=8.4e-10  Score=83.67  Aligned_cols=53  Identities=38%  Similarity=0.527  Sum_probs=48.7

Q ss_pred             cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471          321 SDPKRAKRILANRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQVS  374 (424)
Q Consensus       321 ~DpKR~RRiLkNRESAqRSReRKK~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqre  374 (424)
                      .|+++.||. +||++|+++|+||+.|+.+||.+|..|+.+|..|..++..|+.+
T Consensus         2 ~~~~~~rR~-rNr~AA~r~R~rkk~~~~~le~~~~~L~~en~~L~~~i~~L~~E   54 (54)
T PF07716_consen    2 DEEKRERRE-RNREAARRSRQRKKQREEELEQEVQELEEENEQLRQEIAQLERE   54 (54)
T ss_dssp             CHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            357788888 99999999999999999999999999999999999999888754

; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....

>KOG0709 consensus CREB/ATF family transcription factor [Transcription]

Probab=98.95  E-value=8.7e-10  Score=114.48  Aligned_cols=68  Identities=28%  Similarity=0.438  Sum_probs=62.5

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471          322 DPKRAKRILANRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVL  389 (424)
Q Consensus       322 DpKR~RRiLkNRESAqRSReRKK~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RL  389 (424)
                      .-||+||+|+|.+|||.||+|||+||+.||.+|....+||.+|..++..|+.+|..|..+.+.|...+
T Consensus       249 iLKrvRRKIrNK~SAQESRrkKkeYid~LE~rv~~~taeNqeL~kkV~~Le~~N~sLl~qL~klQt~v  316 (472)
T KOG0709|consen  249 ILKRVRRKIRNKRSAQESRRKKKEYIDGLESRVSAFTAENQELQKKVEELELSNRSLLAQLKKLQTLV  316 (472)
T ss_pred             HHHHHHHHHHhhhhhHHHHHhHhhHHHHHhhhhhhcccCcHHHHHHHHHHhhccHHHHHHHHHHHHHH
Confidence            46999999999999999999999999999999999999999999999999999999998877665443

>KOG3584 consensus cAMP response element binding protein and related transcription factors [Transcription]

Probab=98.75  E-value=1.4e-08  Score=100.91  Aligned_cols=52  Identities=27%  Similarity=0.489  Sum_probs=47.7

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471          322 DPKRAKRILANRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQV  373 (424)
Q Consensus       322 DpKR~RRiLkNRESAqRSReRKK~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqr  373 (424)
                      ..||.-|++||||+|+..|+|||+|+..||.+|..|+++|..|-++|..|..
T Consensus       289 trKRevRLmKNREAARECRRKKKEYVKCLENRVAVLENQNKaLIEELKtLKe  340 (348)
T KOG3584|consen  289 TRKREVRLMKNREAARECRRKKKEYVKCLENRVAVLENQNKALIEELKTLKE  340 (348)
T ss_pred             hhHHHHHHHhhHHHHHHHHHhHhHHHHHHHhHHHHHhcccHHHHHHHHHHHH
Confidence            4678889999999999999999999999999999999999999988887754

>PF03131 bZIP_Maf: bZIP Maf transcription factor; InterPro: IPR004826 There are several different types of Maf transcription factors with different roles in the cell

Probab=98.14  E-value=3.2e-08  Score=82.43  Aligned_cols=75  Identities=28%  Similarity=0.422  Sum_probs=54.4

Q ss_pred             HHHHhhhhchhHHHHhhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471          303 DAELKKIWANEKLAEIALSDPKRAKRILANRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQVSIAELI  379 (424)
Q Consensus       303 ~~e~KKi~~~~~LaElAl~DpKR~RRiLkNRESAqRSReRKK~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~  379 (424)
                      -.|.++.+  ..|.+--..+-|.+||.++||.+|+.+|.||+.++.+||..+..|+.+...|..++..++.+...+.
T Consensus        11 v~efn~~L--~~lt~~q~~~lK~~RRr~KNR~~A~~cR~rk~~~~~~Le~e~~~l~~~~~~L~~e~~~l~~e~~~lk   85 (92)
T PF03131_consen   11 VREFNRLL--RGLTEEQIAELKQRRRRLKNRGYAQNCRKRKLDQIEELEEEIEQLRQEIEQLQQELSELRQERDELK   85 (92)
T ss_dssp             HHHHHHHC--TTS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHCCCCCC
T ss_pred             HHHHHHHH--HcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45566655  3333222345689999999999999999999999999999998888777666666666555444433

MafG and MafH are small Mafs which lack a putative transactivation domain. They behave as transcriptional repressors when they dimerize among themselves. However they also serve as transcriptional activators by dimerizing with other (usually larger) basic-zipper proteins and recruiting them to specific DNA-binding sites. Maf transcription factors contain a conserved basic region leucine zipper (bZIP) domain, which mediates their dimerization and DNA binding property. Neural retina-specific leucine zipper proteins also belong to this family. Together with the basic region, the Maf extended homology region (EHR), conserved only within the Maf family, defines the DNA binding specific to Mafs. This structure enables Mafs to make a broader area of contact with DNA and to recognise longer DNA sequences. In particular, the two residues at the beginning of helix H2 are positioned to recognise the flanking region []. Small Maf proteins heterodimerize with Fos and may act as competitive repressors of the NF2-E2 transcription factor. In mouse, Maf1 may play an early role in axial patterning. Defects in these proteins are a cause of autosomal dominant retinitis pigmentosa. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2KZ5_A 3A5T_A 1K1V_A 1SKN_P 2WT7_B 2WTY_B.

>KOG0837 consensus Transcriptional activator of the JUN family [Transcription]

Probab=97.71  E-value=0.00013  Score=72.27  Aligned_cols=47  Identities=34%  Similarity=0.529  Sum_probs=41.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471          329 ILANRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQVSI  375 (424)
Q Consensus       329 iLkNRESAqRSReRKK~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren  375 (424)
                      -++||++|.++|+||.++|..||.+|..|..+|..|...+..|.+..
T Consensus       211 rlrnreaa~Kcr~rkLdrisrLEdkv~~lk~~n~~L~~~l~~l~~~v  257 (279)
T KOG0837|consen  211 RLRNREAASKCRKRKLDRISRLEDKVKTLKIYNRDLASELSKLKEQV  257 (279)
T ss_pred             HhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHH
Confidence            58999999999999999999999999999999988887776654433

>KOG4571 consensus Activating transcription factor 4 [Transcription]

Probab=97.36  E-value=0.0012  Score=66.14  Aligned_cols=58  Identities=22%  Similarity=0.278  Sum_probs=46.0

Q ss_pred             cChHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471          321 SDPKRAKRILA-NRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQVSIAEL  378 (424)
Q Consensus       321 ~DpKR~RRiLk-NRESAqRSReRKK~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L  378 (424)
                      +++|+.||+-. |..+|.|-|+||++-.++|+.+++.|+.+|.+|+.|+..|+++++.|
T Consensus       223 ~~~~~~~rkr~qnk~AAtRYRqKkRae~E~l~ge~~~Le~rN~~LK~qa~~lerEI~yl  281 (294)
T KOG4571|consen  223 TPEKKLRRKRQQNKAAATRYRQKKRAEKEALLGELEGLEKRNEELKDQASELEREIRYL  281 (294)
T ss_pred             CchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45666665544 44569999999999999999999999999999998888776655443

>KOG4196 consensus bZIP transcription factor MafK [Transcription]

Probab=97.20  E-value=0.0037  Score=56.59  Aligned_cols=82  Identities=20%  Similarity=0.231  Sum_probs=51.7

Q ss_pred             CHHHHhhhhchhHHHHhhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471          302 NDAELKKIWANEKLAEIALSDPKRAKRILANRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQVSIAELILP  381 (424)
Q Consensus       302 s~~e~KKi~~~~~LaElAl~DpKR~RRiLkNRESAqRSReRKK~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~E  381 (424)
                      |-.|+++-+-.-.-.|+  +-.|..||-|+||=.|+-.|-|....-.+||.+-..|+.|..+|..+       +..+..|
T Consensus        33 SVReLNr~LrG~~reEV--vrlKQrRRTLKNRGYA~sCR~KRv~Qk~eLE~~k~~L~qqv~~L~~e-------~s~~~~E  103 (135)
T KOG4196|consen   33 SVRELNRHLRGLSREEV--VRLKQRRRTLKNRGYAQSCRVKRVQQKHELEKEKAELQQQVEKLKEE-------NSRLRRE  103 (135)
T ss_pred             hHHHHHHHhcCCCHHHH--HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHH
Confidence            44566553332222233  34788899999999999999999998888887666655554444444       4444444


Q ss_pred             HHHHHHHHHHH
Q 014471          382 IAEFLIVLLPF  392 (424)
Q Consensus       382 N~ELK~RLqaL  392 (424)
                      ...+|.+.+++
T Consensus       104 ~da~k~k~e~l  114 (135)
T KOG4196|consen  104 LDAYKSKYEAL  114 (135)
T ss_pred             HHHHHHHHHHH
Confidence            44455444433

>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation

Probab=97.02  E-value=0.014  Score=47.78  Aligned_cols=64  Identities=19%  Similarity=0.067  Sum_probs=51.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Q 014471          345 RYISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLPFLI-RAILIVHLFVFLTL  408 (424)
Q Consensus       345 ~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqaLEQ-qaqLrd~L~ealta  408 (424)
                      +-++.||.||+.+-..++.|..++..|+.++..|..+|.+|+...+.+.+ +..+.++|.-.+..
T Consensus         4 E~l~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~LL~k   68 (72)
T PF06005_consen    4 ELLEQLEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLRSLLGK   68 (72)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            45789999999999999999999999999988888888888888877764 55566666555544

It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.

>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]

Probab=96.72  E-value=0.0089  Score=58.93  Aligned_cols=60  Identities=25%  Similarity=0.390  Sum_probs=49.3

Q ss_pred             cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471          321 SDPKRAKRILANRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQVSIAELIL  380 (424)
Q Consensus       321 ~DpKR~RRiLkNRESAqRSReRKK~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~  380 (424)
                      .|++-.-|.-+|=++|++||.+.|.-..+..++|..|+.||..|+.+|..|++++..|..
T Consensus       191 ~~~~y~err~rNN~A~~kSR~~~k~~~~e~~~r~~~leken~~lr~~v~~l~~el~~~~~  250 (269)
T KOG3119|consen  191 KDPEYKERRRRNNEAVRKSRDKRKQKEDEMAHRVAELEKENEALRTQVEQLKKELATLRR  250 (269)
T ss_pred             CCHHHHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444555688999999999999999999999999999999999988887777666543

>PRK13169 DNA replication intiation control protein YabA; Reviewed

Probab=96.69  E-value=0.0078  Score=52.87  Aligned_cols=49  Identities=22%  Similarity=0.152  Sum_probs=45.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471          346 YISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLPFLI  394 (424)
Q Consensus       346 YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqaLEQ  394 (424)
                      .+..||.++..|..+...|+.++..|..+|+.|..||..|+.+|..+++
T Consensus         9 ~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~~~   57 (110)
T PRK13169          9 ALDDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLEELEA   57 (110)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            4789999999999999999999999999999999999999999998743

>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication

Probab=96.59  E-value=0.011  Score=51.62  Aligned_cols=50  Identities=22%  Similarity=0.141  Sum_probs=46.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471          345 RYISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLPFLI  394 (424)
Q Consensus       345 ~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqaLEQ  394 (424)
                      ..|.+||.++..|..+...|+.++..|..+|+.|..||..|+.+|..+++
T Consensus         8 ~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~   57 (107)
T PF06156_consen    8 DRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEELEQ   57 (107)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            35789999999999999999999999999999999999999999988866

SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.

>KOG3863 consensus bZIP transcription factor NRF1 [Transcription]

Probab=96.20  E-value=0.011  Score=64.41  Aligned_cols=79  Identities=27%  Similarity=0.264  Sum_probs=55.5

Q ss_pred             hhchhHHHHhhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471          309 IWANEKLAEIALSDPKRAKRILANRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIV  388 (424)
Q Consensus       309 i~~~~~LaElAl~DpKR~RRiLkNRESAqRSReRKK~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~R  388 (424)
                      .++.-+|.|.-+.=-+-+||.=+||.+||+.|+||..-|..||..|..|+.|-.+|..+       ...+..+..++|++
T Consensus       475 ~ls~~~lte~QLslIrDIRRRgKNkvAAQnCRKRKLd~I~nLE~ev~~l~~eKeqLl~E-------r~~~d~~L~~~kqq  547 (604)
T KOG3863|consen  475 MLSKYKLTEEQLSLIRDIRRRGKNKVAAQNCRKRKLDCILNLEDEVEKLQKEKEQLLRE-------RDELDSTLGVMKQQ  547 (604)
T ss_pred             HHHhcccCHHHHHHhhccccccccchhccchhhhHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH
Confidence            33444444322323455678889999999999999999999999999999887776654       33345556666666


Q ss_pred             HHHHHH
Q 014471          389 LLPFLI  394 (424)
Q Consensus       389 LqaLEQ  394 (424)
                      |..|-+
T Consensus       548 ls~L~~  553 (604)
T KOG3863|consen  548 LSELYQ  553 (604)
T ss_pred             HHHHHH
Confidence            666554

>KOG4005 consensus Transcription factor XBP-1 [Transcription]

Probab=95.61  E-value=0.15  Score=50.70  Aligned_cols=85  Identities=18%  Similarity=0.173  Sum_probs=67.6

Q ss_pred             hcChHHHHHHHHHHHH--HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471          320 LSDPKRAKRILANRQS--AARSKERKMRY-ISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLPFLIRA  396 (424)
Q Consensus       320 l~DpKR~RRiLkNRES--AqRSReRKK~Y-ieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqaLEQqa  396 (424)
                      ..+-||+|--.+-.-+  -++.|+-+++| |.+|+.+-+.|+.||..|+++...|-.+++.|..+..+|++.|-.+.|++
T Consensus        69 K~~RrKLKNRVAAQtaRDrKKaRm~eme~~i~dL~een~~L~~en~~Lr~~n~~L~~~n~el~~~le~~~~~l~~~~~~~  148 (292)
T KOG4005|consen   69 KVQRRKLKNRVAAQTARDRKKARMEEMEYEIKDLTEENEILQNENDSLRAINESLLAKNHELDSELELLRQELAELKQQQ  148 (292)
T ss_pred             HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHHHH
Confidence            4567777743333222  12345556666 67999999999999999999999999999999999999999999999998


Q ss_pred             HHHHHHHH
Q 014471          397 ILIVHLFV  404 (424)
Q Consensus       397 qLrd~L~e  404 (424)
                      |....+++
T Consensus       149 ~~~~~v~e  156 (292)
T KOG4005|consen  149 QHNTRVIE  156 (292)
T ss_pred             HHhhHHHh
Confidence            87766655

>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family

Probab=95.20  E-value=0.17  Score=47.39  Aligned_cols=70  Identities=21%  Similarity=0.117  Sum_probs=51.2

Q ss_pred             HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Q 014471          341 ERKMRYISELEQ---KVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLPFLIRA-ILIVHLFVFLTLFF  410 (424)
Q Consensus       341 eRKK~YieELE~---KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqaLEQqa-qLrd~L~ealta~f  410 (424)
                      .-=..|+..|..   ..+.++.||..|..++..|+.++..|..||..|+.+++.+++.= .|...+..|-+-++
T Consensus        83 ~~vI~fLq~l~~~~~~~~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L~~Im~RARkl~~  156 (161)
T TIGR02894        83 QDVISFLQNLKTTNPSDQALQKENERLKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQTLIDIMDRARKLAV  156 (161)
T ss_pred             HHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            333456666665   47788899999999999999999999999999999998887643 23334444444333

In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.

>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]

Probab=95.07  E-value=0.075  Score=47.12  Aligned_cols=50  Identities=18%  Similarity=0.101  Sum_probs=45.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHH
Q 014471          346 YISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLP--FLIR  395 (424)
Q Consensus       346 YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqa--LEQq  395 (424)
                      .+.+||.++.+|-.|...|++++..|-.+|..|..||..|+.||..  +|..
T Consensus         9 ~v~~le~~l~~l~~el~~lK~~l~~lvEEN~~L~lENe~LR~RL~~~~~e~~   60 (114)
T COG4467           9 QVDNLEEQLGVLLAELGGLKQHLGSLVEENTALRLENEKLRERLGEPTLEKT   60 (114)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHHHHhCCccccch
Confidence            4688999999999999999999999999999999999999999987  5543

>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=94.88  E-value=0.57  Score=43.75  Aligned_cols=70  Identities=16%  Similarity=0.150  Sum_probs=55.8

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471          322 DPKRAKRILANRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLP  391 (424)
Q Consensus       322 DpKR~RRiLkNRESAqRSReRKK~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqa  391 (424)
                      +.++++.+.+.+..-..-.......|.+++.-++.|+.|...|..++..++.....|..||.+|-.|.-.
T Consensus       114 ~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~Rwm~  183 (194)
T PF08614_consen  114 KERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENRELVERWMQ  183 (194)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455566666666666666677778888888899999999999999999999999999999999888643

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.

>TIGR02449 conserved hypothetical protein TIGR02449

Probab=94.56  E-value=0.25  Score=40.05  Aligned_cols=46  Identities=17%  Similarity=0.140  Sum_probs=29.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471          347 ISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLPF  392 (424)
Q Consensus       347 ieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqaL  392 (424)
                      |+.|=..++.|+.||..|++++..++.+...|...|..-+.||++|
T Consensus         9 le~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEam   54 (65)
T TIGR02449         9 VEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQARQKVEAM   54 (65)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4455555566666666666666666666666666666666666554

Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.

>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function

Probab=94.53  E-value=0.17  Score=40.54  Aligned_cols=51  Identities=24%  Similarity=0.090  Sum_probs=42.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471          345 RYISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLPFLIR  395 (424)
Q Consensus       345 ~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqaLEQq  395 (424)
                      ..|.+||.++..++.-..+|...|...+++...|..+.+.|..||..++..
T Consensus         4 ~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~~~   54 (69)
T PF04102_consen    4 ERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRELEDP   54 (69)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            578999999999999999999999999999999999999999999888743

It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.

>PRK00295 hypothetical protein; Provisional

Probab=94.49  E-value=0.27  Score=39.66  Aligned_cols=48  Identities=19%  Similarity=0.187  Sum_probs=44.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471          346 YISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLPFL  393 (424)
Q Consensus       346 YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqaLE  393 (424)
                      .|.+||.++..++.-..+|...|...+++...|..+.+.|..||..++
T Consensus         6 Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~~~   53 (68)
T PRK00295          6 RVTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIKRQEEMV   53 (68)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            499999999999999999999999999999999999999988887765

>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]

Probab=94.41  E-value=0.9  Score=48.21  Aligned_cols=87  Identities=20%  Similarity=0.178  Sum_probs=67.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Q 014471          324 KRAKRILANRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLPFLIRA-ILIVHL  402 (424)
Q Consensus       324 KR~RRiLkNRESAqRSReRKK~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqaLEQqa-qLrd~L  402 (424)
                      |+++.+-++=+.-.++....+.....||..++.++++..++..++...+.+...+...+.++..+|+.++.|. .-+..|
T Consensus        38 ~~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q~r~qr~~L  117 (420)
T COG4942          38 KQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQEREQRRRL  117 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            5666555554444445555666778999999999999999999999999999999999999999999988665 555566


Q ss_pred             HHHHHHHH
Q 014471          403 FVFLTLFF  410 (424)
Q Consensus       403 ~ealta~f  410 (424)
                      .+.+.+++
T Consensus       118 a~~L~A~~  125 (420)
T COG4942         118 AEQLAALQ  125 (420)
T ss_pred             HHHHHHHH
Confidence            66555544

>PRK00736 hypothetical protein; Provisional

Probab=94.35  E-value=0.26  Score=39.69  Aligned_cols=49  Identities=16%  Similarity=0.189  Sum_probs=44.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471          345 RYISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLPFL  393 (424)
Q Consensus       345 ~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqaLE  393 (424)
                      .+|.+||.++..++.-..+|...|..-+++...|..+...|..||..++
T Consensus         5 ~Ri~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~~~~   53 (68)
T PRK00736          5 ERLTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALTERFLSLE   53 (68)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            4599999999999999999999999999999999999999988887764

>PRK15422 septal ring assembly protein ZapB; Provisional

Probab=94.35  E-value=0.72  Score=38.90  Aligned_cols=40  Identities=23%  Similarity=0.217  Sum_probs=25.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471          345 RYISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAE  384 (424)
Q Consensus       345 ~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~E  384 (424)
                      +-++.||.||+..-..++-|.-+|..|..++..|..|+..
T Consensus         4 EvleqLE~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~   43 (79)
T PRK15422          4 EVFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQN   43 (79)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3467888888876666555655666665555555555544

>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]

Probab=94.21  E-value=2.9  Score=38.39  Aligned_cols=74  Identities=14%  Similarity=0.089  Sum_probs=65.8

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471          322 DPKRAKRILANRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLPFLIR  395 (424)
Q Consensus       322 DpKR~RRiLkNRESAqRSReRKK~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqaLEQq  395 (424)
                      =++-+.....|++.|-.--+-+++.+..|+.++..+..+...|...+..+..+...|..+..+.+.++..|+..
T Consensus        29 LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~eLE~~  102 (140)
T PF10473_consen   29 LERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKENLDKELQKKQEKVSELESL  102 (140)
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34555667889999999999999999999999999999999999999999999999999999999999888863

There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding

>PRK02793 phi X174 lysis protein; Provisional

Probab=94.17  E-value=0.29  Score=39.88  Aligned_cols=50  Identities=18%  Similarity=0.126  Sum_probs=45.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471          345 RYISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLPFLI  394 (424)
Q Consensus       345 ~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqaLEQ  394 (424)
                      +.|.+||.++..++.-..+|...|...+++...|..+.+.|..||..++.
T Consensus         8 ~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~~   57 (72)
T PRK02793          8 ARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKLKASQP   57 (72)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            57899999999999999999999999999999999999999888877653

>PRK04325 hypothetical protein; Provisional

Probab=94.13  E-value=0.29  Score=40.03  Aligned_cols=48  Identities=19%  Similarity=0.088  Sum_probs=43.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471          346 YISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLPFL  393 (424)
Q Consensus       346 YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqaLE  393 (424)
                      .|.+||.++..++.-..+|...|..-+++...|..+.+.|..||..++
T Consensus        10 Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl~~~~   57 (74)
T PRK04325         10 RITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQQMRDAN   57 (74)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            499999999999999999999999999999999999988888887764

>PRK04406 hypothetical protein; Provisional

Probab=93.88  E-value=0.34  Score=39.92  Aligned_cols=49  Identities=12%  Similarity=0.083  Sum_probs=43.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471          345 RYISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLPFL  393 (424)
Q Consensus       345 ~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqaLE  393 (424)
                      ..|.+||.++..++.-..+|...|...+++...|..+.+.|+.||..++
T Consensus        11 ~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~~~~   59 (75)
T PRK04406         11 ERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKVKNMD   59 (75)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            4789999999999999999999999999999999999888888887664

>PRK02119 hypothetical protein; Provisional

Probab=93.88  E-value=0.35  Score=39.54  Aligned_cols=50  Identities=18%  Similarity=0.131  Sum_probs=44.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471          344 MRYISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLPFL  393 (424)
Q Consensus       344 K~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqaLE  393 (424)
                      -..|.+||.++..++.-..+|...|..-+++...|..+.+.|..||..++
T Consensus         8 e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~~~~   57 (73)
T PRK02119          8 ENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKLKDMQ   57 (73)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            35789999999999999999999999999999999999998888887664

>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch

Probab=93.87  E-value=3.1  Score=37.09  Aligned_cols=67  Identities=15%  Similarity=0.174  Sum_probs=41.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471          325 RAKRILANRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLP  391 (424)
Q Consensus       325 R~RRiLkNRESAqRSReRKK~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqa  391 (424)
                      ...|=+..|+.......++..-++.|+..++.|+.++..+..++..++.+...|..+++.+...+..
T Consensus        46 ~~~r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~  112 (151)
T PF11559_consen   46 QRDRDMEQREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQ  112 (151)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344555566666666666666666666666666666666666666666666666665555554433

pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.

>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure

Probab=93.86  E-value=0.55  Score=39.44  Aligned_cols=48  Identities=19%  Similarity=0.110  Sum_probs=43.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471          348 SELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLPFLIR  395 (424)
Q Consensus       348 eELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqaLEQq  395 (424)
                      ++|..++..||.....|..++..++.++..|..||.-|...|..|-..
T Consensus        19 ~~Li~ei~~LQ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~YI~nLm~~   66 (80)
T PF10224_consen   19 EELIQEILELQDSLEALSDRVEEVKEENEKLESENEYLQQYIGNLMSS   66 (80)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            578889999999999999999999999999999999999999887443

The exact function is unknown.

>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]

Probab=93.82  E-value=3.1  Score=41.28  Aligned_cols=50  Identities=18%  Similarity=0.173  Sum_probs=32.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471          345 RYISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLPFLI  394 (424)
Q Consensus       345 ~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqaLEQ  394 (424)
                      ..+..|+..+++++.+..+|..++..|..+...|..+...|+.++..++.
T Consensus        89 ~e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~  138 (239)
T COG1579          89 RELRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEK  138 (239)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34556666666666666666666666666666666666666666665554

>PF13747 DUF4164: Domain of unknown function (DUF4164)

Probab=93.79  E-value=1.3  Score=37.38  Aligned_cols=68  Identities=18%  Similarity=0.180  Sum_probs=59.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471          324 KRAKRILANRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLP  391 (424)
Q Consensus       324 KR~RRiLkNRESAqRSReRKK~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqa  391 (424)
                      +|+.+.|.+=+++-..|--+..-..+||.+|+.|...-..|-.++.....+...|+.-|.|+..+|..
T Consensus        11 ~rL~~aid~LE~~v~~r~~~~~~~~~~e~ei~~l~~dr~rLa~eLD~~~ar~~~Le~~~~Evs~rL~~   78 (89)
T PF13747_consen   11 TRLEAAIDRLEKAVDRRLERDRKRDELEEEIQRLDADRSRLAQELDQAEARANRLEEANREVSRRLDS   78 (89)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence            46677777777777777777777799999999999999999999999999999999999999999964

>PHA03155 hypothetical protein; Provisional

Probab=93.70  E-value=0.55  Score=41.99  Aligned_cols=73  Identities=18%  Similarity=0.181  Sum_probs=44.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Q 014471          346 YISELEQKVQTLQTEATTLSAQVTIL-----------QVSIAELILPIAEFLIVLLPFL-IRAILIVHLFVFLTLFFFRE  413 (424)
Q Consensus       346 YieELE~KVq~Lq~EN~~Ls~Ql~~L-----------qren~~L~~EN~ELK~RLqaLE-QqaqLrd~L~ealta~f~rE  413 (424)
                      -++||+.+++.|+.||..|+.++..-           |++. .+..--..|-  -++++ -.++++..+..+.|.--..|
T Consensus         9 tvEeLaaeL~kL~~ENK~LKkkl~~~~~p~d~~LT~~qKea-~I~s~v~~Lt--~~A~~KIe~kVrk~~~~~vTk~q~~~   85 (115)
T PHA03155          9 DVEELEKELQKLKIENKALKKKLLQHGNPEDELLTPAQKDA-IINSLVNKLT--KKAEEKIRERVLKDLLPLVSKNQCME   85 (115)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHccCCCCccccCHHHHHH-HHHHHHHHHH--HHHHHHHHHHHHHHHhhhccHHHHHH
Confidence            37899999999999999999988431           1111 1111111121  12222 23455555666777777778


Q ss_pred             HHhhhhcc
Q 014471          414 ILRGLQVR  421 (424)
Q Consensus       414 I~~~lq~R  421 (424)
                      ++..+.||
T Consensus        86 al~~lt~R   93 (115)
T PHA03155         86 AIADIKYR   93 (115)
T ss_pred             HHhcCeee
Confidence            88888887

>PRK10884 SH3 domain-containing protein; Provisional

Probab=93.63  E-value=0.88  Score=43.78  Aligned_cols=45  Identities=13%  Similarity=0.195  Sum_probs=25.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471          344 MRYISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIV  388 (424)
Q Consensus       344 K~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~R  388 (424)
                      ++-+.+++..+..|+.+|.+|.++++.++.++..|..+|..++..
T Consensus       124 ~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~~  168 (206)
T PRK10884        124 QQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQRT  168 (206)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333445555566666666666666666666666655555555543

>TIGR02449 conserved hypothetical protein TIGR02449

Probab=93.54  E-value=0.98  Score=36.71  Aligned_cols=47  Identities=15%  Similarity=0.056  Sum_probs=36.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471          347 ISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLPFL  393 (424)
Q Consensus       347 ieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqaLE  393 (424)
                      +..||.||..|-.....|..++..|..+...+..|+..|..+++.-.
T Consensus         2 L~~Le~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar   48 (65)
T TIGR02449         2 LQALAAQVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQAR   48 (65)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56788888888888888888888888888888888888877665443

Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.

>PHA03162 hypothetical protein; Provisional

Probab=93.42  E-value=0.26  Score=44.95  Aligned_cols=80  Identities=16%  Similarity=0.109  Sum_probs=46.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH----HHHHHHHHHHHH-----HHH--HHHH-HHHHHHHHHHHHHHH
Q 014471          342 RKMRYISELEQKVQTLQTEATTLSAQVTILQ-VS----IAELILPIAEFL-----IVL--LPFL-IRAILIVHLFVFLTL  408 (424)
Q Consensus       342 RKK~YieELE~KVq~Lq~EN~~Ls~Ql~~Lq-re----n~~L~~EN~ELK-----~RL--qaLE-QqaqLrd~L~ealta  408 (424)
                      +|+.-++||+.+++.|+.||..|+.+|..-- -.    -..|....+|..     .+|  ++++ -.++++..+..+.|.
T Consensus        10 k~~~tmEeLaaeL~kLqmENK~LKkkl~~~~~~~~~p~d~~LTp~qKea~I~s~v~~Lts~A~kKIe~KVr~~t~~~vTk   89 (135)
T PHA03162         10 KAQPTMEDLAAEIAKLQLENKALKKKIKEGTDDDPLPGDPILTPAAKEAMIGAATAALTRQAAKKIEAKIRHETLKATTK   89 (135)
T ss_pred             ccCCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccH
Confidence            4556689999999999999999999983310 00    001222222211     111  1222 244555555566666


Q ss_pred             HHHHHHHhhhhcc
Q 014471          409 FFFREILRGLQVR  421 (424)
Q Consensus       409 ~f~rEI~~~lq~R  421 (424)
                      --+.|++..+-||
T Consensus        90 ~e~e~aL~~lt~R  102 (135)
T PHA03162         90 EEFEAAIANIRFR  102 (135)
T ss_pred             HHHHHHHhcCeee
Confidence            6677777777777

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes

Probab=93.33  E-value=1.1  Score=49.96  Aligned_cols=43  Identities=19%  Similarity=0.188  Sum_probs=29.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471          346 YISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIV  388 (424)
Q Consensus       346 YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~R  388 (424)
                      .-+-+..+.++|+.|..+|+.++...+.++..|+.|..+|+..
T Consensus       539 ~~e~~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~~  581 (697)
T PF09726_consen  539 CAESCRQRRRQLESELKKLRRELKQKEEQIRELESELQELRKY  581 (697)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344666777777777777777777777777777777666543

; GO: 0016021 integral to membrane

>PRK00846 hypothetical protein; Provisional

Probab=93.30  E-value=0.52  Score=39.37  Aligned_cols=50  Identities=20%  Similarity=0.076  Sum_probs=45.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471          344 MRYISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLPFL  393 (424)
Q Consensus       344 K~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqaLE  393 (424)
                      ..+|.+||.++...+.-..+|...+...++....|..+.+.|+.||..++
T Consensus        12 e~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~~~   61 (77)
T PRK00846         12 EARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVR   61 (77)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            36789999999999999999999999999999999999999999988876

>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=93.30  E-value=3.9  Score=39.48  Aligned_cols=43  Identities=16%  Similarity=0.118  Sum_probs=17.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471          350 LEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLPF  392 (424)
Q Consensus       350 LE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqaL  392 (424)
                      |+.++..|+.|...|..++..+++....+..+..+|+.++..+
T Consensus        54 L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~   96 (251)
T PF11932_consen   54 LLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQI   96 (251)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333333333333333344444444444444444433

However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.

>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation

Probab=93.04  E-value=0.65  Score=38.10  Aligned_cols=42  Identities=17%  Similarity=0.045  Sum_probs=21.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471          349 ELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLL  390 (424)
Q Consensus       349 ELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLq  390 (424)
                      .+=..+..|+.|+..|+.+...|..++..|..||..|+....
T Consensus        15 ~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~   56 (72)
T PF06005_consen   15 QAVETIALLQMENEELKEKNNELKEENEELKEENEQLKQERN   56 (72)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence            334445555555555555555555555555555555554433

It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.

>PRK09039 hypothetical protein; Validated

Probab=93.02  E-value=3.3  Score=42.37  Aligned_cols=44  Identities=25%  Similarity=0.197  Sum_probs=23.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471          350 LEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLPFL  393 (424)
Q Consensus       350 LE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqaLE  393 (424)
                      |+.++..++.+.++...++..|+++...|..+...|...|.+.|
T Consensus       121 l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae  164 (343)
T PRK09039        121 LAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASE  164 (343)
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444444444455555555555555555555555555544

>PRK10884 SH3 domain-containing protein; Provisional

Probab=92.95  E-value=3.1  Score=40.05  Aligned_cols=55  Identities=15%  Similarity=0.053  Sum_probs=36.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471          345 RYISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLPFLIRAILI  399 (424)
Q Consensus       345 ~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqaLEQqaqLr  399 (424)
                      +...+|..+++.+..+..+|..++..|++++..+..|+..|+.+++.+....+++
T Consensus       118 ~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~~~~~~  172 (206)
T PRK10884        118 QRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQRTIIMQ  172 (206)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5556677777777777777777777777777777777776666666665544433

>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=92.91  E-value=0.89  Score=37.96  Aligned_cols=33  Identities=18%  Similarity=0.164  Sum_probs=15.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471          354 VQTLQTEATTLSAQVTILQVSIAELILPIAEFL  386 (424)
Q Consensus       354 Vq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK  386 (424)
                      |..|..+|.+|..++..++.....|..||..||
T Consensus        27 ieELKEknn~l~~e~q~~q~~reaL~~eneqlk   59 (79)
T COG3074          27 IEELKEKNNSLSQEVQNAQHQREALERENEQLK   59 (79)
T ss_pred             HHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHH
Confidence            333444444444444444444445555555554

>PRK11637 AmiB activator; Provisional

Probab=92.86  E-value=3.2  Score=42.97  Aligned_cols=49  Identities=14%  Similarity=0.127  Sum_probs=26.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471          343 KMRYISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLP  391 (424)
Q Consensus       343 KK~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqa  391 (424)
                      -...+..|+.++..++.+...+..++..++.+...|..+..+++.+|..
T Consensus        73 ~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~  121 (428)
T PRK11637         73 LLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAA  121 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344555555555555555555555555555555555555555555443

>PRK11637 AmiB activator; Provisional

Probab=92.76  E-value=3.7  Score=42.53  Aligned_cols=47  Identities=11%  Similarity=-0.003  Sum_probs=19.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471          347 ISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLPFL  393 (424)
Q Consensus       347 ieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqaLE  393 (424)
                      ..+|+...+.++.+..+|..+....+.....|..+..++...|..++
T Consensus       193 ~~~l~~~~~e~~~~k~~L~~~k~e~~~~l~~L~~~~~~~~~~l~~l~  239 (428)
T PRK11637        193 QSQQKTLLYEQQAQQQKLEQARNERKKTLTGLESSLQKDQQQLSELR  239 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444444444444444444433334444444444444444443

>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch

Probab=92.73  E-value=6.9  Score=34.89  Aligned_cols=45  Identities=24%  Similarity=0.401  Sum_probs=18.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471          339 SKERKMRYISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIA  383 (424)
Q Consensus       339 SReRKK~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~  383 (424)
                      .|+|=+.+.++|+.++..+..++..|...+..|+.++..+..+..
T Consensus        46 ~~~r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~   90 (151)
T PF11559_consen   46 QRDRDMEQREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELA   90 (151)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444444444444444444444444444444333333333333

pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.

>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional

Probab=92.64  E-value=0.48  Score=50.84  Aligned_cols=47  Identities=15%  Similarity=0.087  Sum_probs=41.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471          346 YISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLPF  392 (424)
Q Consensus       346 YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqaL  392 (424)
                      -..+||+++..|+.|...|.++...++++...|+.||+.|+.++.++
T Consensus        77 kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql~a~  123 (475)
T PRK13729         77 TAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQVKAL  123 (475)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhh
Confidence            34699999999999999999999999999999999999999888543

>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication

Probab=92.46  E-value=0.87  Score=39.84  Aligned_cols=52  Identities=21%  Similarity=0.167  Sum_probs=42.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471          349 ELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLPFLIRAILIVHLFVFL  406 (424)
Q Consensus       349 ELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqaLEQqaqLrd~L~eal  406 (424)
                      +|=.++..|+.....|..++..|+.+...|..||.+|+.+.      .+||+.|.+..
T Consensus         5 ~l~~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN------~~Lr~~l~~~~   56 (107)
T PF06156_consen    5 ELFDRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIEN------EHLRERLEELE   56 (107)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHh
Confidence            56677888999999999999999999999999999999888      45555555543

SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.

>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division []

Probab=92.29  E-value=2.1  Score=35.31  Aligned_cols=53  Identities=17%  Similarity=0.214  Sum_probs=42.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHH
Q 014471          347 ISELEQKVQTLQTEATTLSAQVTILQVSIA--------ELILPIAEFLIVLLPFLIRAILI  399 (424)
Q Consensus       347 ieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~--------~L~~EN~ELK~RLqaLEQqaqLr  399 (424)
                      +-+.|..+..|+.||-.|+-+|-.|+....        .+..||-+||..+..|...-+-.
T Consensus         2 lrEqe~~i~~L~KENF~LKLrI~fLee~l~~~~~~~~~~~~keNieLKve~~~L~~el~~~   62 (75)
T PF07989_consen    2 LREQEEQIDKLKKENFNLKLRIYFLEERLQKLGPESIEELLKENIELKVEVESLKRELQEK   62 (75)
T ss_pred             HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            457899999999999999999988887655        56788889998888877654433

>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function

Probab=92.07  E-value=3.1  Score=43.48  Aligned_cols=52  Identities=21%  Similarity=0.103  Sum_probs=44.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471          340 KERKMRYISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLP  391 (424)
Q Consensus       340 ReRKK~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqa  391 (424)
                      =.|-+..+..||.-+..+..||..|..|+..+++++...+.|+.+|..+|..
T Consensus       122 f~k~k~~~q~LE~li~~~~EEn~~lqlqL~~l~~e~~Ekeeesq~LnrELaE  173 (401)
T PF06785_consen  122 FMKTKGDIQHLEGLIRHLREENQCLQLQLDALQQECGEKEEESQTLNRELAE  173 (401)
T ss_pred             HHHhcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHhHHHHHHHHHHHHH
Confidence            4566778889999999999999999999999999998888888888666543

>PF05812 Herpes_BLRF2: Herpesvirus BLRF2 protein; InterPro: IPR008642 This family consists of several herpes virus BLRF2 tegument proteins

Probab=92.00  E-value=1.3  Score=39.76  Aligned_cols=79  Identities=23%  Similarity=0.119  Sum_probs=42.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHH-----HHH--HHHH-HHHHHHHHHHHHHHHH
Q 014471          343 KMRYISELEQKVQTLQTEATTLSAQVTILQV-----SIAELILPIAEFL-----IVL--LPFL-IRAILIVHLFVFLTLF  409 (424)
Q Consensus       343 KK~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqr-----en~~L~~EN~ELK-----~RL--qaLE-QqaqLrd~L~ealta~  409 (424)
                      |..-++||+.+++.|+.||..|+.+|..---     .-..|.-..+|..     -+|  ++++ -.++++..+..+.|.-
T Consensus         1 k~~t~EeLaaeL~kLqmENk~LKkkl~~~~~p~~~p~~~~LTp~qKe~~I~s~~~~Lss~A~~KIe~kVr~~t~~~vTk~   80 (118)
T PF05812_consen    1 KDMTMEELAAELQKLQMENKALKKKLRQSVGPGPSPDDEVLTPAQKEAMITSAVSKLSSQASKKIEAKVRKLTAKLVTKE   80 (118)
T ss_dssp             --HHHHHHHHHHHHHHHHHHHHHHHHHHTT---S-TT--B--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--BHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCCccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHH
Confidence            3445799999999999999999998764321     0111222222221     111  2222 1344555555566666


Q ss_pred             HHHHHHhhhhcc
Q 014471          410 FFREILRGLQVR  421 (424)
Q Consensus       410 f~rEI~~~lq~R  421 (424)
                      -..|++..+.||
T Consensus        81 e~~e~l~~l~~R   92 (118)
T PF05812_consen   81 EIEEALKNLTIR   92 (118)
T ss_dssp             HHHHHHHT-EEE
T ss_pred             HHHHHHhcceee
Confidence            677888888887

; PDB: 2OA5_B 2H3R_D.

>PF14662 CCDC155: Coiled-coil region of CCDC155

Probab=91.83  E-value=1.6  Score=42.20  Aligned_cols=49  Identities=20%  Similarity=0.205  Sum_probs=36.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471          346 YISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLPFLI  394 (424)
Q Consensus       346 YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqaLEQ  394 (424)
                      -|++|+.--+.|..||..|...+..+...+..|..|+..|+.++.++.|
T Consensus         9 ~v~dL~~~n~~L~~en~kL~~~ve~~ee~na~L~~e~~~L~~q~~s~Qq   57 (193)
T PF14662_consen    9 CVEDLQLNNQKLADENAKLQRSVETAEEGNAQLAEEITDLRKQLKSLQQ   57 (193)
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4677777777777777777777777777777777777777777766644

>PF08537 NBP1: Fungal Nap binding protein NBP1; InterPro: IPR013743 NBP1 is a nuclear protein which has been shown in Saccharomyces cerevisiae (Bakers yeast) to be essential for the G2/M transition of the cell cycle

Probab=91.26  E-value=2.6  Score=43.49  Aligned_cols=89  Identities=17%  Similarity=0.138  Sum_probs=59.6

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471          322 DPKRAKRILANRQSAARSKERKMRYISELEQKVQTLQTE-----------ATTLSAQVTILQVSIAELILPIAEFLIVLL  390 (424)
Q Consensus       322 DpKR~RRiLkNRESAqRSReRKK~YieELE~KVq~Lq~E-----------N~~Ls~Ql~~Lqren~~L~~EN~ELK~RLq  390 (424)
                      --++.|++|++|...-..=+||...+.-=+..+++|..-           ......++.+||++++.|..+..++..+|+
T Consensus       120 ~~~e~r~~lk~RI~rSEAFKRKllE~kYD~~mL~qLr~g~~~~~~~~~~~~~~~~D~v~LLqkk~~~l~~~l~~~~~eL~  199 (323)
T PF08537_consen  120 SGREERRLLKDRILRSEAFKRKLLEKKYDKRMLEQLRRGRSKNRHNRPRNPSSNSDRVILLQKKIDELEERLNDLEKELE  199 (323)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCCCCcccccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345666899999998888888866555445566666531           111236788888888888888888888887


Q ss_pred             HHHHHHHHHHHHHHHHHHHH
Q 014471          391 PFLIRAILIVHLFVFLTLFF  410 (424)
Q Consensus       391 aLEQqaqLrd~L~ealta~f  410 (424)
                      .+.........-+..|+.++
T Consensus       200 ~~~k~L~faqekn~LlqslL  219 (323)
T PF08537_consen  200 ITKKDLKFAQEKNALLQSLL  219 (323)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            76555444444445666655

>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=91.24  E-value=10  Score=36.68  Aligned_cols=40  Identities=23%  Similarity=0.295  Sum_probs=16.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471          346 YISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEF  385 (424)
Q Consensus       346 YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~EL  385 (424)
                      -+..|+.++..|+..|.+|..++..++++...|..+..++
T Consensus        57 e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~   96 (251)
T PF11932_consen   57 EYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQI   96 (251)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444444444444444444444444444444443333

However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.

>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family

Probab=91.20  E-value=0.99  Score=48.52  Aligned_cols=46  Identities=13%  Similarity=0.136  Sum_probs=23.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Q 014471          348 SELEQKVQTLQTEATTLSAQVTILQVSI-AELILPIAEFLIVLLPFL  393 (424)
Q Consensus       348 eELE~KVq~Lq~EN~~Ls~Ql~~Lqren-~~L~~EN~ELK~RLqaLE  393 (424)
                      ..|+.+-+.|..||.+|+++...+..+. ..|..+..+|..+.+.+.
T Consensus        76 ~~l~~~N~~l~~eN~~L~~r~~~id~~i~~av~~~~~~~~~~~~ql~  122 (472)
T TIGR03752        76 AKLISENEALKAENERLQKREQSIDQQIQQAVQSETQELTKEIEQLK  122 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHH
Confidence            4555555555555555555444433333 344555666665555544

Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.

>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=91.09  E-value=3.8  Score=34.30  Aligned_cols=48  Identities=19%  Similarity=0.110  Sum_probs=23.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471          345 RYISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLPF  392 (424)
Q Consensus       345 ~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqaL  392 (424)
                      +-++.||.||++.-.-.+-|.-++..|...+..|..|..++.....+|
T Consensus         4 Ev~ekLE~KiqqAvdTI~LLQmEieELKEknn~l~~e~q~~q~~reaL   51 (79)
T COG3074           4 EVFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREAL   51 (79)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHH
Confidence            456778888876544444444444444444444444444333333333

>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5

Probab=90.82  E-value=4.6  Score=44.77  Aligned_cols=68  Identities=21%  Similarity=0.233  Sum_probs=47.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------------HHHHHHHHHHHHHHHHHHHHHHH
Q 014471          327 KRILANRQSAARSKERKMRYISELEQKVQTLQT------------------------EATTLSAQVTILQVSIAELILPI  382 (424)
Q Consensus       327 RRiLkNRESAqRSReRKK~YieELE~KVq~Lq~------------------------EN~~Ls~Ql~~Lqren~~L~~EN  382 (424)
                      .-.++|.+.-.+-...+...|.+||.++..++.                        .|.+|+.|+..|+..+-.|.++|
T Consensus       104 qaqv~~ne~Ls~L~~EqEerL~ELE~~le~~~e~~~D~~kLLe~lqsdk~t~SRAlsQN~eLK~QL~Elq~~Fv~ltne~  183 (617)
T PF15070_consen  104 QAQVENNEQLSRLNQEQEERLAELEEELERLQEQQEDRQKLLEQLQSDKATASRALSQNRELKEQLAELQDAFVKLTNEN  183 (617)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHhHHHHHHHHHHHHHHHHHHHHhh
Confidence            334455555444445667777777777666654                        46778888889999888999998


Q ss_pred             HHHHHHHHHHHH
Q 014471          383 AEFLIVLLPFLI  394 (424)
Q Consensus       383 ~ELK~RLqaLEQ  394 (424)
                      .+|+..|++-.+
T Consensus       184 ~elt~~lq~Eq~  195 (617)
T PF15070_consen  184 MELTSALQSEQH  195 (617)
T ss_pred             hHhhHHHHHHHH
Confidence            888777766443

>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89

Probab=90.81  E-value=2.1  Score=34.82  Aligned_cols=49  Identities=8%  Similarity=-0.004  Sum_probs=22.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471          347 ISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLPFLIR  395 (424)
Q Consensus       347 ieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqaLEQq  395 (424)
                      ++-|++++...+.+|..|..+-....++....-.+|.+||.++.++.++
T Consensus        14 Ld~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~e   62 (69)
T PF14197_consen   14 LDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKE   62 (69)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444444444444444444444444444444444555444444433

>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins

Probab=90.79  E-value=0.38  Score=45.22  Aligned_cols=53  Identities=13%  Similarity=0.102  Sum_probs=24.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471          347 ISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLPFLIRAILIVHLF  403 (424)
Q Consensus       347 ieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqaLEQqaqLrd~L~  403 (424)
                      |+|+|.|+++--.+|.-|..+|    .+...|..+++.||.++-.|.|+..+++.+.
T Consensus         2 LeD~EsklN~AIERnalLE~EL----dEKE~L~~~~QRLkDE~RDLKqEl~V~ek~~   54 (166)
T PF04880_consen    2 LEDFESKLNQAIERNALLESEL----DEKENLREEVQRLKDELRDLKQELIVQEKLR   54 (166)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHCH---------------------
T ss_pred             HHHHHHHHHHHHHHhHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            6899999999888888888887    3355566666666666666666555555554

Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)

Probab=90.68  E-value=7.4  Score=42.76  Aligned_cols=56  Identities=20%  Similarity=0.173  Sum_probs=25.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471          328 RILANRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIA  383 (424)
Q Consensus       328 RiLkNRESAqRSReRKK~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~  383 (424)
                      .+++-..........-+..++.|+..+...+.++..|..+...+......|..|+.
T Consensus       154 eL~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~kel~~~~e~l~~E~~  209 (546)
T PF07888_consen  154 ELLKENEQLEEEVEQLREEVERLEAELEQEEEEMEQLKQQQKELTESSEELKEERE  209 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444444444444455555555555555554444444444433333333333

This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].

>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins

Probab=90.42  E-value=2.6  Score=36.38  Aligned_cols=48  Identities=27%  Similarity=0.287  Sum_probs=29.0

Q ss_pred             HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471          348 SELEQKVQTLQTEATTL--SAQVTILQVSIAELILPIAEFLIVLLPFLIR  395 (424)
Q Consensus       348 eELE~KVq~Lq~EN~~L--s~Ql~~Lqren~~L~~EN~ELK~RLqaLEQq  395 (424)
                      .+++.+++.++++...|  +..+..|+-+...+.-+.++|..+|+.++.+
T Consensus        45 ~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v~~~   94 (106)
T PF10805_consen   45 DEHDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGVSHQ   94 (106)
T ss_pred             HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence            34455555555555555  5566666666666666666666666666544

The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.

>PRK13169 DNA replication intiation control protein YabA; Reviewed

Probab=90.24  E-value=1.9  Score=38.06  Aligned_cols=50  Identities=18%  Similarity=0.142  Sum_probs=38.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471          349 ELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLPFLIRAILIVHLFV  404 (424)
Q Consensus       349 ELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqaLEQqaqLrd~L~e  404 (424)
                      +|=.+|..|+.....|..++..|+.+...|..||.+|+...      .+||+.|.+
T Consensus         5 elfd~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN------~~Lr~~l~~   54 (110)
T PRK13169          5 EIFDALDDLEQNLGVLLKELGALKKQLAELLEENTALRLEN------DKLRERLEE   54 (110)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHH
Confidence            56667888888888888888888888888888888888776      445555554

>PF14662 CCDC155: Coiled-coil region of CCDC155

Probab=90.13  E-value=5.6  Score=38.49  Aligned_cols=46  Identities=28%  Similarity=0.208  Sum_probs=38.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471          348 SELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLPFL  393 (424)
Q Consensus       348 eELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqaLE  393 (424)
                      .-|+.+|..|+.||.+|..+...|+.+...|..++..|+.+|=.++
T Consensus        98 q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~~~~~~Lq~Ql~~~e  143 (193)
T PF14662_consen   98 QSLVAEIETLQEENGKLLAERDGLKKRSKELATEKATLQRQLCEFE  143 (193)
T ss_pred             HHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhhHHHHHHHHHHH
Confidence            5688889999999999999999999999999889999988874333

>KOG0243 consensus Kinesin-like protein [Cytoskeleton]

Probab=90.11  E-value=8.6  Score=45.11  Aligned_cols=64  Identities=20%  Similarity=0.107  Sum_probs=37.3

Q ss_pred             HHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471          329 ILANRQSAARSKE-----------------RKMRYISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLP  391 (424)
Q Consensus       329 iLkNRESAqRSRe-----------------RKK~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqa  391 (424)
                      +|+++..|+|.+.                 -+...|++||.+++.++.+...|.+.+...+..+..|..+...|+.+|+.
T Consensus       415 rLK~dl~AaReKnGvyisee~y~~~e~e~~~~~~~ieele~el~~~~~~l~~~~e~~~~~~~~~~~l~~~~~~~k~~L~~  494 (1041)
T KOG0243|consen  415 RLKRDLAAAREKNGVYISEERYTQEEKEKKEMAEQIEELEEELENLEKQLKDLTELYMNQLEIKELLKEEKEKLKSKLQN  494 (1041)
T ss_pred             HHHHHHHHhHhhCceEechHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence            4566677776542                 23445566666666666666666665555555555666666666666554


Q ss_pred             H
Q 014471          392 F  392 (424)
Q Consensus       392 L  392 (424)
                      .
T Consensus       495 ~  495 (1041)
T KOG0243|consen  495 K  495 (1041)
T ss_pred             H
Confidence            3

>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana

Probab=89.93  E-value=13  Score=35.40  Aligned_cols=56  Identities=21%  Similarity=0.280  Sum_probs=31.0

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471          322 DPKRAKRILANRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQVSIAE  377 (424)
Q Consensus       322 DpKR~RRiLkNRESAqRSReRKK~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~  377 (424)
                      |.+-++..|....+-+..+...+.+...||.++..-..++..+..++..|++....
T Consensus        87 nV~~l~~RL~kLL~lk~~~~~~~e~~k~le~~~~~~~~~~~~~e~~i~~Le~ki~e  142 (190)
T PF05266_consen   87 NVKFLRSRLNKLLSLKDDQEKLLEERKKLEKKIEEKEAELKELESEIKELEMKILE  142 (190)
T ss_pred             ccHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence            34455555666666666666777777777777665544444444444333333333

>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking

Probab=89.41  E-value=19  Score=34.37  Aligned_cols=48  Identities=17%  Similarity=0.214  Sum_probs=23.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471          341 ERKMRYISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIV  388 (424)
Q Consensus       341 eRKK~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~R  388 (424)
                      ...+..+.+++.++..|+.+...+..++...+++...+..++...+..
T Consensus        59 ~~~~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~~  106 (302)
T PF10186_consen   59 QQLKREIEELRERLERLRERIERLRKRIEQKRERLEELRESLEQRRSR  106 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444445555555555555555555555555444444444444433

In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy

>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []

Probab=89.37  E-value=6  Score=35.39  Aligned_cols=12  Identities=8%  Similarity=-0.094  Sum_probs=4.5

Q ss_pred             HHHHHHHHHHHH
Q 014471          379 ILPIAEFLIVLL  390 (424)
Q Consensus       379 ~~EN~ELK~RLq  390 (424)
                      ..+..+|..|.+
T Consensus        74 ~~el~~l~~ry~   85 (120)
T PF12325_consen   74 EQELEELQQRYQ   85 (120)
T ss_pred             HHHHHHHHHHHH
Confidence            333333333333

The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].

>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []

Probab=89.35  E-value=1.2  Score=33.56  Aligned_cols=37  Identities=14%  Similarity=0.090  Sum_probs=20.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471          357 LQTEATTLSAQVTILQVSIAELILPIAEFLIVLLPFL  393 (424)
Q Consensus       357 Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqaLE  393 (424)
                      |+.+...|+.....|..++..|..||..|+.+++.+.
T Consensus         3 lE~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~   39 (45)
T PF02183_consen    3 LERDYDALKASYDSLKAEYDSLKKENEKLRAEVQELK   39 (45)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444445555555555566666666666666554443

; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF13851 GAS: Growth-arrest specific micro-tubule binding

Probab=89.33  E-value=13  Score=35.50  Aligned_cols=60  Identities=20%  Similarity=0.242  Sum_probs=43.9

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471          322 DPKRAKRILANRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQVSIAELILP  381 (424)
Q Consensus       322 DpKR~RRiLkNRESAqRSReRKK~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~E  381 (424)
                      +-..+++.|++-+.-+.+=..-+..+..++.++..|+.|+..|..++..|+++...|...
T Consensus        70 e~~eL~k~L~~y~kdK~~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~k  129 (201)
T PF13851_consen   70 EVEELRKQLKNYEKDKQSLQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELYRK  129 (201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445566777777777777777677777888888888888888887777777777666543

>COG2433 Uncharacterized conserved protein [Function unknown]

Probab=89.14  E-value=4.4  Score=45.08  Aligned_cols=46  Identities=24%  Similarity=0.334  Sum_probs=39.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471          345 RYISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLL  390 (424)
Q Consensus       345 ~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLq  390 (424)
                      +.+..|+.+|+.|+.||..|...+..+++++..|..+..+++.++.
T Consensus       422 ~~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~  467 (652)
T COG2433         422 KRIKKLEETVERLEEENSELKRELEELKREIEKLESELERFRREVR  467 (652)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4567888999999999999999999999999999888888876654

>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family

Probab=89.02  E-value=3.1  Score=44.83  Aligned_cols=29  Identities=28%  Similarity=0.310  Sum_probs=15.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471          348 SELEQKVQTLQTEATTLSAQVTILQVSIA  376 (424)
Q Consensus       348 eELE~KVq~Lq~EN~~Ls~Ql~~Lqren~  376 (424)
                      .+|+.+++.|..+|..|.++++.|+++..
T Consensus        69 k~~r~~~~~l~~~N~~l~~eN~~L~~r~~   97 (472)
T TIGR03752        69 KELRKRLAKLISENEALKAENERLQKREQ   97 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            35556666666666555555555544433

Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.

>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]

Probab=88.99  E-value=21  Score=35.53  Aligned_cols=71  Identities=15%  Similarity=0.149  Sum_probs=45.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHH
Q 014471          323 PKRAKRILANRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQV---------SIAELILPIAEFLIVLLPFL  393 (424)
Q Consensus       323 pKR~RRiLkNRESAqRSReRKK~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqr---------en~~L~~EN~ELK~RLqaLE  393 (424)
                      +|-++.+..-.+.+.+.-.-++.-+++|+.+|..++.+...+++++..++.         +...|..|...++.|+.+++
T Consensus        30 ~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~~v~~~~e~~aL~~E~~~ak~r~~~le  109 (239)
T COG1579          30 RKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKLSAVKDERELRALNIEIQIAKERINSLE  109 (239)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHH
Confidence            555666666667777777777777888888888888888888777766543         33344444444444444433

>KOG1414 consensus Transcriptional activator FOSB/c-Fos and related bZIP transcription factors [Transcription]

Probab=88.96  E-value=0.018  Score=59.39  Aligned_cols=61  Identities=30%  Similarity=0.287  Sum_probs=53.6

Q ss_pred             cChHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Q 014471          321 SDPKRAKRILANRQSAAR---SKERKMRYISELEQKVQTLQ-TEATTLSAQVTILQVSIAELILP  381 (424)
Q Consensus       321 ~DpKR~RRiLkNRESAqR---SReRKK~YieELE~KVq~Lq-~EN~~Ls~Ql~~Lqren~~L~~E  381 (424)
                      .+.|+..|..+|+.+|++   +|.||+.+..+|..+|+.|+ .++..|..++..|+.+.+.|..+
T Consensus       151 ~~~~~~~rr~rn~~aA~~~~~~r~~~~~~t~~l~~qv~~l~~~~~~~l~~~is~Lqne~~~l~~~  215 (395)
T KOG1414|consen  151 PEEKRLLRRERNPVAAAKPIPCRNRKKPSTSPLQRQVELLPPGINSPLSPQISPLQNEADHLEKE  215 (395)
T ss_pred             chHHHHhhccccccccCCCCCCccccccccccccchHhhcCCCCCcccCccccccccHHHHHHHH
Confidence            467899999999999999   99999999999999999999 88888888888888777666544

>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins

Probab=88.86  E-value=16  Score=32.37  Aligned_cols=84  Identities=15%  Similarity=0.223  Sum_probs=40.5

Q ss_pred             CCHHHHhhhhchhH-HHHhhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471          301 FNDAELKKIWANEK-LAEIALSDPKRAKRILANRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQVSIAELI  379 (424)
Q Consensus       301 ~s~~e~KKi~~~~~-LaElAl~DpKR~RRiLkNRESAqRSReRKK~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~  379 (424)
                      .|-.|++.++.++. +.+++. .--.++.+...++....+-+.=.+....++.++..+..+...+..++..|+.++..+.
T Consensus         4 lS~~eL~~Ll~d~~~l~~~v~-~l~~~~~~~~~~~~l~~~n~~lAe~nL~~~~~l~~~r~~l~~~~~~~~~L~~~~~~k~   82 (150)
T PF07200_consen    4 LSTEELQELLSDEEKLDAFVK-SLPQVQELQQEREELLAENEELAEQNLSLEPELEELRSQLQELYEELKELESEYQEKE   82 (150)
T ss_dssp             -TTHHHHHHHHH-HHHHHHGG-GGS--HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHcCHHHHHHHHH-cCHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34567777776664 344332 2222455555555555555555555555555555555555555555555555555555


Q ss_pred             HHHHHH
Q 014471          380 LPIAEF  385 (424)
Q Consensus       380 ~EN~EL  385 (424)
                      .+-.++
T Consensus        83 ~~~~~l   88 (150)
T PF07200_consen   83 QQQDEL   88 (150)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            544444

The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=88.57  E-value=13  Score=39.88  Aligned_cols=29  Identities=24%  Similarity=0.225  Sum_probs=23.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471          344 MRYISELEQKVQTLQTEATTLSAQVTILQ  372 (424)
Q Consensus       344 K~YieELE~KVq~Lq~EN~~Ls~Ql~~Lq  372 (424)
                      ++++.++|..++.||.||++|..+.....
T Consensus        47 ~a~~~~~E~~l~~Lq~e~~~l~e~~v~~~   75 (459)
T KOG0288|consen   47 KAKLQEKELELNRLQEENTQLNEERVREE   75 (459)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45567999999999999999987765533

>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]

Probab=88.54  E-value=2.4  Score=35.33  Aligned_cols=51  Identities=18%  Similarity=0.109  Sum_probs=43.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471          345 RYISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLPFLIR  395 (424)
Q Consensus       345 ~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqaLEQq  395 (424)
                      +.|.+||.++..-+.-..+|...++..+.....+..+.+.|-.|+..++.+
T Consensus         8 ~Ri~eLE~r~AfQE~tieeLn~~laEq~~~i~k~q~qlr~L~~kl~~~~~~   58 (72)
T COG2900           8 ARIIELEIRLAFQEQTIEELNDALAEQQLVIDKLQAQLRLLTEKLKDLQPS   58 (72)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence            468899999999888888999999998888888888888888888777654

>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]

Probab=88.41  E-value=3.9  Score=44.76  Aligned_cols=59  Identities=20%  Similarity=0.089  Sum_probs=48.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Q 014471          346 YISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLPFLI-RAILIVHLFV  404 (424)
Q Consensus       346 YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqaLEQ-qaqLrd~L~e  404 (424)
                      -|+.+-.....++.||..|..+|..+++....+..|+.+|+.-|+++.+ +.++.+.+.+
T Consensus       220 el~~kt~el~~q~Ee~skLlsql~d~qkk~k~~~~Ekeel~~~Lq~~~da~~ql~aE~~E  279 (596)
T KOG4360|consen  220 ELQSKTKELSRQQEENSKLLSQLVDLQKKIKYLRHEKEELDEHLQAYKDAQRQLTAELEE  279 (596)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence            3445555567788999999999999999999999999999999999875 5666666554

>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=88.38  E-value=7.8  Score=36.24  Aligned_cols=46  Identities=24%  Similarity=0.235  Sum_probs=20.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471          349 ELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLPFLI  394 (424)
Q Consensus       349 ELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqaLEQ  394 (424)
                      .|+.++..|..+...+..-+..|+-++..|..+++.+..++..+++
T Consensus       127 ~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~  172 (194)
T PF08614_consen  127 QLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEE  172 (194)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444444444444444444444444444444444445544443

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.

>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana

Probab=88.33  E-value=7.3  Score=37.15  Aligned_cols=48  Identities=23%  Similarity=0.160  Sum_probs=20.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471          343 KMRYISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLL  390 (424)
Q Consensus       343 KK~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLq  390 (424)
                      +-..|.+||.++-.|+.+...+..+......++..|..+...|++.+.
T Consensus       129 ~e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks~~~~l~~~~~  176 (190)
T PF05266_consen  129 LESEIKELEMKILELQRQAAKLKEKKEAKDKEISRLKSEAEALKEEIE  176 (190)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444444444444444444444444444344444444444433333

>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []

Probab=87.99  E-value=2  Score=32.38  Aligned_cols=42  Identities=21%  Similarity=0.234  Sum_probs=37.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471          349 ELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLL  390 (424)
Q Consensus       349 ELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLq  390 (424)
                      .||+....|......|..+...|++++..|..|...|+..++
T Consensus         2 QlE~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~kl~   43 (45)
T PF02183_consen    2 QLERDYDALKASYDSLKAEYDSLKKENEKLRAEVQELKEKLQ   43 (45)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            488889999999999999999999999999999999988775

; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=87.89  E-value=7.9  Score=35.19  Aligned_cols=50  Identities=16%  Similarity=0.100  Sum_probs=22.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Q 014471          346 YISELEQKVQTLQTEATTLSAQVTILQVSIA---ELILPIAEFLIVLLPFLIR  395 (424)
Q Consensus       346 YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~---~L~~EN~ELK~RLqaLEQq  395 (424)
                      -|..|..+++.|+.+...+..++..+.....   .....+..|..||+.||++
T Consensus        36 EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E~l~rriq~LEee   88 (143)
T PF12718_consen   36 EITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNAEQLNRRIQLLEEE   88 (143)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHhhHHHHHHH
Confidence            3444444444444444444444444333222   2222344566666666653

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].

>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]

Probab=87.84  E-value=10  Score=44.51  Aligned_cols=29  Identities=28%  Similarity=0.386  Sum_probs=14.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471          345 RYISELEQKVQTLQTEATTLSAQVTILQV  373 (424)
Q Consensus       345 ~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqr  373 (424)
                      .++++||..+-.|+.||..|..||+.|..
T Consensus       530 ~k~eeLe~~l~~lE~ENa~LlkqI~~Lk~  558 (1195)
T KOG4643|consen  530 NKLEELEELLGNLEEENAHLLKQIQSLKT  558 (1195)
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence            34445555555555555555555544443

>PRK03918 chromosome segregation protein; Provisional

Probab=87.66  E-value=15  Score=40.95  Aligned_cols=7  Identities=14%  Similarity=0.140  Sum_probs=3.1

Q ss_pred             HHHhhhh
Q 014471          304 AELKKIW  310 (424)
Q Consensus       304 ~e~KKi~  310 (424)
                      .++++++
T Consensus       145 ~~r~~~~  151 (880)
T PRK03918        145 ESREKVV  151 (880)
T ss_pred             HHHHHHH
Confidence            4444443

>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]

Probab=87.57  E-value=17  Score=40.21  Aligned_cols=48  Identities=17%  Similarity=0.238  Sum_probs=38.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471          342 RKMRYISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVL  389 (424)
Q Consensus       342 RKK~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RL  389 (424)
                      +=+.|+..++.+.+.+......|..++...+.++..|..+|.+||..|
T Consensus       277 K~~~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~I  324 (581)
T KOG0995|consen  277 KFQAYVSQMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQI  324 (581)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            346788888888888888888888888888888888888888887665

>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins

Probab=87.47  E-value=7.4  Score=33.64  Aligned_cols=54  Identities=22%  Similarity=0.270  Sum_probs=39.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471          343 KMRYISELEQKVQTLQTEATTLSAQVTIL--QVSIAELILPIAEFLIVLLPFLIRA  396 (424)
Q Consensus       343 KK~YieELE~KVq~Lq~EN~~Ls~Ql~~L--qren~~L~~EN~ELK~RLqaLEQqa  396 (424)
                      |+..++.|+.++.......+.|..++..|  +.+.+.|..+..+++-++..|+.+-
T Consensus        33 ~~~~~~~l~~~~~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l   88 (106)
T PF10805_consen   33 KREDIEKLEERLDEHDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARL   88 (106)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence            34556677777777777777777777777  7777777777777777777776654

The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.

>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]

Probab=87.42  E-value=11  Score=40.72  Aligned_cols=49  Identities=18%  Similarity=0.107  Sum_probs=39.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471          346 YISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLPFLI  394 (424)
Q Consensus       346 YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqaLEQ  394 (424)
                      .++.|+-+++.|..||+.|+..++.|...+..|..+.+.+-.+|.++..
T Consensus       298 e~Enlqmr~qqleeentelRs~~arlksl~dklaee~qr~sd~LE~lrl  346 (502)
T KOG0982|consen  298 EKENLQMRDQQLEEENTELRSLIARLKSLADKLAEEDQRSSDLLEALRL  346 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence            3566778899999999999999999998888888888777777766554

>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]

Probab=87.22  E-value=15  Score=43.32  Aligned_cols=14  Identities=21%  Similarity=0.596  Sum_probs=5.9

Q ss_pred             HHHHHHHHHHHHHH
Q 014471          347 ISELEQKVQTLQTE  360 (424)
Q Consensus       347 ieELE~KVq~Lq~E  360 (424)
                      +..||++|..++.+
T Consensus       374 ~d~l~k~I~~~~~~  387 (1074)
T KOG0250|consen  374 VDRLEKQIADLEKQ  387 (1074)
T ss_pred             HHHHHHHHHHHHHH
Confidence            34444444444433

>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues

Probab=86.87  E-value=8.5  Score=39.57  Aligned_cols=61  Identities=25%  Similarity=0.140  Sum_probs=47.1

Q ss_pred             HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Q 014471          348 SELEQKV---QTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLPF-LIRAILIVHLFVFLTL  408 (424)
Q Consensus       348 eELE~KV---q~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqaL-EQqaqLrd~L~ealta  408 (424)
                      ++|.+|.   ...+.|.+.|..|+..||+....+..||.+|...|.+. +.|.+|...|.+....
T Consensus       220 eELa~k~Ee~~rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aEL~elqdk  284 (306)
T PF04849_consen  220 EELARKTEENRRQQEEITSLLSQIVDLQQRCKQLAAENEELQQHLQASKESQRQLQAELQELQDK  284 (306)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4555553   44577888999999999999999999999999999874 4577777777664433

HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].

>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89

Probab=86.86  E-value=12  Score=30.46  Aligned_cols=56  Identities=14%  Similarity=0.052  Sum_probs=40.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Q 014471          349 ELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLP-FLIRAILIVHLFV  404 (424)
Q Consensus       349 ELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqa-LEQqaqLrd~L~e  404 (424)
                      .||..|..|+..+..+..++...+..+..|..|+...-.+|+. .+.-..|++.+..
T Consensus         2 ~Lea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~   58 (69)
T PF14197_consen    2 KLEAEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEA   58 (69)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4788888888888888888888888888888888777666654 3344445544433

>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins

Probab=86.85  E-value=2.6  Score=41.71  Aligned_cols=49  Identities=20%  Similarity=0.232  Sum_probs=37.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471          336 AARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFL  386 (424)
Q Consensus       336 AqRSReRKK~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK  386 (424)
                      +||-|=  ++...|||.++..++.++..|+.++..|+.+|..|-...+-|.
T Consensus        86 sQRDRF--R~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLYEKiRylq  134 (248)
T PF08172_consen   86 SQRDRF--RQRNAELEEELRKQQQTISSLRREVESLRADNVKLYEKIRYLQ  134 (248)
T ss_pred             HHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            444444  4455899999999999999999888888888888877666553

These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane

>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []

Probab=86.48  E-value=16  Score=32.77  Aligned_cols=32  Identities=28%  Similarity=0.308  Sum_probs=11.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471          351 EQKVQTLQTEATTLSAQVTILQVSIAELILPI  382 (424)
Q Consensus       351 E~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN  382 (424)
                      |.++..|+.++..|..+-..+..+.-.|+.+|
T Consensus        29 E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~   60 (120)
T PF12325_consen   29 EGELASLQEELARLEAERDELREEIVKLMEEN   60 (120)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333333333333333333333333333

The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]

Probab=86.37  E-value=5.3  Score=45.82  Aligned_cols=52  Identities=19%  Similarity=0.047  Sum_probs=31.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471          339 SKERKMRYISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLL  390 (424)
Q Consensus       339 SReRKK~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLq  390 (424)
                      -+.+-.-.++.|-.++..|+.||.+|.++++....+...|..++.-||.+|.
T Consensus       665 lI~~lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~qLg  716 (970)
T KOG0946|consen  665 LIRELDYQIENLKQMEKELQVENEELEEEVQDFISEHSQLKDQLDLLKNQLG  716 (970)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            3334444455566666666666666666666666666666666666666655

>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=86.28  E-value=8.4  Score=39.08  Aligned_cols=47  Identities=26%  Similarity=0.261  Sum_probs=24.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471          347 ISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLPFL  393 (424)
Q Consensus       347 ieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqaLE  393 (424)
                      +.+++.+++.|+.|...|.+++..|+++...|..|..+|+.++..++
T Consensus        45 ~~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~   91 (314)
T PF04111_consen   45 IEELEEELEKLEQEEEELLQELEELEKEREELDQELEELEEELEELD   91 (314)
T ss_dssp             -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455555555555555555555555555555555555555554443

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.

>KOG1103 consensus Predicted coiled-coil protein [Function unknown]

Probab=86.25  E-value=2.7  Score=44.35  Aligned_cols=63  Identities=14%  Similarity=0.162  Sum_probs=55.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471          333 RQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLPFLIR  395 (424)
Q Consensus       333 RESAqRSReRKK~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqaLEQq  395 (424)
                      -+.|+--|+|-.+--...|..+..+..|.+.|++++..+.+...+|..|+..||+-+..+|..
T Consensus       226 eee~aaERerglqteaqvek~i~EfdiEre~LRAel~ree~r~K~lKeEmeSLkeiVkdlEA~  288 (561)
T KOG1103|consen  226 EEEAAAERERGLQTEAQVEKLIEEFDIEREFLRAELEREEKRQKMLKEEMESLKEIVKDLEAD  288 (561)
T ss_pred             hHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence            367777888888888888999999999999999999999999999999999999888777754

>PRK13922 rod shape-determining protein MreC; Provisional

Probab=86.20  E-value=5.1  Score=38.97  Aligned_cols=34  Identities=21%  Similarity=0.227  Sum_probs=16.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Q 014471          356 TLQTEATTLSAQVTILQVSIA---ELILPIAEFLIVL  389 (424)
Q Consensus       356 ~Lq~EN~~Ls~Ql~~Lqren~---~L~~EN~ELK~RL  389 (424)
                      .|..||.+|++|+..|+.+..   .|..||.+|+.-|
T Consensus        73 ~l~~en~~L~~e~~~l~~~~~~~~~l~~en~~L~~lL  109 (276)
T PRK13922         73 DLREENEELKKELLELESRLQELEQLEAENARLRELL  109 (276)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            344444444444444443333   5566676666544

>TIGR00219 mreC rod shape-determining protein MreC

Probab=85.71  E-value=1.9  Score=42.93  Aligned_cols=38  Identities=16%  Similarity=0.110  Sum_probs=24.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
Q 014471          353 KVQTLQTEATTLSAQVTILQVSI----AELILPIAEFLIVLL  390 (424)
Q Consensus       353 KVq~Lq~EN~~Ls~Ql~~Lqren----~~L~~EN~ELK~RLq  390 (424)
                      .+..|+.||.+|++|+..|+.+.    ..|+.||.+||.-|.
T Consensus        67 ~~~~l~~EN~~Lr~e~~~l~~~~~~~~~~l~~EN~rLr~LL~  108 (283)
T TIGR00219        67 DVNNLEYENYKLRQELLKKNQQLEILTQNLKQENVRLRELLN  108 (283)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            34456778888887776653333    347788888876553

MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes

Probab=85.65  E-value=23  Score=39.99  Aligned_cols=37  Identities=22%  Similarity=0.262  Sum_probs=24.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471          344 MRYISELEQKVQTLQTEATTLSAQVTILQVSIAELIL  380 (424)
Q Consensus       344 K~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~  380 (424)
                      ++...+||.+++.|+.|.....+++..|+.+...|..
T Consensus       544 r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~  580 (697)
T PF09726_consen  544 RQRRRQLESELKKLRRELKQKEEQIRELESELQELRK  580 (697)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444678888888888777777777666666654443

; GO: 0016021 integral to membrane

>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]

Probab=85.50  E-value=5  Score=39.40  Aligned_cols=37  Identities=19%  Similarity=0.170  Sum_probs=18.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471          353 KVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVL  389 (424)
Q Consensus       353 KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RL  389 (424)
                      +.+.++.++..|..|.+.++++++.|..|++.|+.++
T Consensus       173 ~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i  209 (216)
T KOG1962|consen  173 KLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQI  209 (216)
T ss_pred             HHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHH
Confidence            3334444444455555555555555555555554444

>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association []

Probab=85.38  E-value=13  Score=37.65  Aligned_cols=48  Identities=19%  Similarity=0.157  Sum_probs=25.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471          345 RYISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLPF  392 (424)
Q Consensus       345 ~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqaL  392 (424)
                      .++..|..++..+..+...++.++..++.+...+..+..+++.+++.+
T Consensus       209 ~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l  256 (325)
T PF08317_consen  209 EELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQEL  256 (325)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445555555555555555555555555555555555555554444443

>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast)

Probab=85.11  E-value=17  Score=34.35  Aligned_cols=21  Identities=29%  Similarity=0.423  Sum_probs=10.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHH
Q 014471          338 RSKERKMRYISELEQKVQTLQ  358 (424)
Q Consensus       338 RSReRKK~YieELE~KVq~Lq  358 (424)
                      ...++...-+.+|+.++..+.
T Consensus        76 ~~~~~~~~~i~~l~~~i~~~~   96 (188)
T PF03962_consen   76 KEIEELEKKIEELEEKIEEAK   96 (188)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            333444444455555555543

The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].

>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=84.98  E-value=13  Score=37.51  Aligned_cols=46  Identities=26%  Similarity=0.335  Sum_probs=20.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471          347 ISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLPF  392 (424)
Q Consensus       347 ieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqaL  392 (424)
                      +.+|+..++.++.+...|-.++..++.....+..++.+++..|..+
T Consensus        40 l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l   85 (265)
T COG3883          40 LSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKL   85 (265)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444444444444444444444444444444444444444333

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope

Probab=84.85  E-value=41  Score=32.92  Aligned_cols=20  Identities=20%  Similarity=0.486  Sum_probs=7.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHH
Q 014471          349 ELEQKVQTLQTEATTLSAQV  368 (424)
Q Consensus       349 ELE~KVq~Lq~EN~~Ls~Ql  368 (424)
                      .|+.++..|+..|..|..+|
T Consensus       227 ~l~~el~~l~~~~~~Le~~l  246 (312)
T PF00038_consen  227 SLQAELESLRAKNASLERQL  246 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH
T ss_pred             HhhhhhhccccchhhhhhhH
Confidence            33333333333333333333

They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....

>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]

Probab=84.81  E-value=22  Score=41.37  Aligned_cols=78  Identities=17%  Similarity=0.130  Sum_probs=57.6

Q ss_pred             HHhhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471          316 AEIALSDPKRAKRILANRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLPFL  393 (424)
Q Consensus       316 aElAl~DpKR~RRiLkNRESAqRSReRKK~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqaLE  393 (424)
                      ++-+..|..++|--+.-+...+.--++-+.-++++|.+....+.....|+..++.|......|...+.+..+++..-+
T Consensus       381 ~qe~~~e~eqLr~elaql~a~r~q~eka~~~~ee~e~~~l~~e~ry~klkek~t~l~~~h~~lL~K~~di~kQle~~~  458 (980)
T KOG0980|consen  381 AQENREEQEQLRNELAQLLASRTQLEKAQVLVEEAENKALAAENRYEKLKEKYTELRQEHADLLRKYDDIQKQLESAE  458 (980)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344445555666667777777766677676788999999888888888888888888888888887777766665433

>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility

Probab=84.64  E-value=20  Score=33.97  Aligned_cols=38  Identities=29%  Similarity=0.352  Sum_probs=21.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471          348 SELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEF  385 (424)
Q Consensus       348 eELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~EL  385 (424)
                      .+|+.++..|+.++..|..++..|+.....+...+.++
T Consensus       123 ~~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~e~  160 (189)
T PF10211_consen  123 QELEEEIEELEEEKEELEKQVQELKNKCEQLEKREEEL  160 (189)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45555666666666666666666555555555444443

Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].

>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []

Probab=84.59  E-value=21  Score=36.66  Aligned_cols=16  Identities=25%  Similarity=0.246  Sum_probs=9.4

Q ss_pred             HHHhhhhchhHHHHhh
Q 014471          304 AELKKIWANEKLAEIA  319 (424)
Q Consensus       304 ~e~KKi~~~~~LaElA  319 (424)
                      +|-|..++..-|+.|.
T Consensus         6 eEWKeGL~~~aLqKIq   21 (307)
T PF10481_consen    6 EEWKEGLPTRALQKIQ   21 (307)
T ss_pred             hHHhccCCHHHHHHHH
Confidence            4556666666666544

Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].

>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6

Probab=84.43  E-value=23  Score=29.74  Aligned_cols=45  Identities=20%  Similarity=0.246  Sum_probs=26.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Q 014471          351 EQKVQTLQTEATTLSAQVTILQV---SIAELILPIAEFLIVLLPFLIR  395 (424)
Q Consensus       351 E~KVq~Lq~EN~~Ls~Ql~~Lqr---en~~L~~EN~ELK~RLqaLEQq  395 (424)
                      ..++..|+.+-..++.++..+..   +...|..+-++|+.++..++.+
T Consensus        42 ~~~~e~lr~~rN~~sk~I~~~~~~~~~~~~l~~e~~~lk~~i~~le~~   89 (108)
T PF02403_consen   42 QQELEELRAERNELSKEIGKLKKAGEDAEELKAEVKELKEEIKELEEQ   89 (108)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCHTTCCTHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444444455555555544   3556667777777777777654

1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....

>PRK05431 seryl-tRNA synthetase; Provisional

Probab=84.23  E-value=16  Score=38.48  Aligned_cols=68  Identities=26%  Similarity=0.312  Sum_probs=34.5

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHH
Q 014471          322 DPKRAKRILANRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQVSI----------AELILPIAEFLIVLLP  391 (424)
Q Consensus       322 DpKR~RRiLkNRESAqRSReRKK~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren----------~~L~~EN~ELK~RLqa  391 (424)
                      ++..+++.+++|.. ..    =...+.+|..+...|+.+...|+++...+.++.          ..|..|.++|+.+|..
T Consensus        10 n~~~v~~~l~~R~~-~~----~vd~i~~ld~~~r~l~~~~~~lr~~rn~~sk~i~~~~~~~~~~~~l~~~~~~l~~~~~~   84 (425)
T PRK05431         10 NPEAVKEALAKRGF-PL----DVDELLELDEERRELQTELEELQAERNALSKEIGQAKRKGEDAEALIAEVKELKEEIKA   84 (425)
T ss_pred             CHHHHHHHHHhcCC-cc----cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHH
Confidence            56666777777721 00    023344444444444444444444444444333          3455566666666666


Q ss_pred             HHH
Q 014471          392 FLI  394 (424)
Q Consensus       392 LEQ  394 (424)
                      +|+
T Consensus        85 ~~~   87 (425)
T PRK05431         85 LEA   87 (425)
T ss_pred             HHH
Confidence            554

>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=84.22  E-value=32  Score=35.01  Aligned_cols=57  Identities=21%  Similarity=0.279  Sum_probs=33.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471          338 RSKERKMRYISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLPFLI  394 (424)
Q Consensus       338 RSReRKK~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqaLEQ  394 (424)
                      ....+..+.+.+||.....|..|...|..+...++++-...-.+.+.++.++..+++
T Consensus        57 ~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~  113 (314)
T PF04111_consen   57 QEEEELLQELEELEKEREELDQELEELEEELEELDEEEEEYWREYNELQLELIEFQE  113 (314)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344455555666666666666666666666666665555555555666555544443

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.

>PRK10698 phage shock protein PspA; Provisional

Probab=84.00  E-value=15  Score=35.62  Aligned_cols=59  Identities=12%  Similarity=0.086  Sum_probs=43.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471          345 RYISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLPFLIRAILIVHLF  403 (424)
Q Consensus       345 ~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqaLEQqaqLrd~L~  403 (424)
                      ..+..|+..+...+.....|..++..|+..+..+......|..|.++.+-+.++.+.+.
T Consensus        99 ~~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~~L~aR~~~A~a~~~~~~~~~  157 (222)
T PRK10698         99 DLIATLEHEVTLVDETLARMKKEIGELENKLSETRARQQALMLRHQAASSSRDVRRQLD  157 (222)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            33556677777777777778888888888888888888888888877777766666554

>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues

Probab=84.00  E-value=7.5  Score=39.94  Aligned_cols=47  Identities=19%  Similarity=0.229  Sum_probs=39.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471          344 MRYISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLL  390 (424)
Q Consensus       344 K~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLq  390 (424)
                      +..|.+|+.+++.+..||..|...+...+.....|..|..+|+.+..
T Consensus       240 lsqivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aEL~elqdkY~  286 (306)
T PF04849_consen  240 LSQIVDLQQRCKQLAAENEELQQHLQASKESQRQLQAELQELQDKYA  286 (306)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45677888888888888888888888888888888888888887763

HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].

>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []

Probab=83.99  E-value=0.58  Score=40.05  Aligned_cols=47  Identities=23%  Similarity=0.372  Sum_probs=26.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471          345 RYISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLP  391 (424)
Q Consensus       345 ~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqa  391 (424)
                      .||+.|...+..|..+|..|..++..|+.+...+..+...|+..|..
T Consensus        25 ~fl~~l~~~~~~l~~e~~~L~~~~~~l~~~l~~~~~~~~~l~~~l~~   71 (131)
T PF05103_consen   25 DFLDELAEELERLQRENAELKEEIEELQAQLEELREEEESLQRALIQ   71 (131)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHCCCCT-----------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHhhhh
Confidence            58888999999999999999998888888888887777777766533

Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.

>TIGR02977 phageshock_pspA phage shock protein A

Probab=83.66  E-value=16  Score=34.83  Aligned_cols=59  Identities=17%  Similarity=0.139  Sum_probs=39.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471          344 MRYISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLPFLIRAILIVHL  402 (424)
Q Consensus       344 K~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqaLEQqaqLrd~L  402 (424)
                      ...+..|+..+..++....+|..++..|++....+......|+.|.+....+.++...+
T Consensus        98 ~~~~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k~~~l~ar~~~A~a~~~~~~~~  156 (219)
T TIGR02977        98 QELAEALERELAAVEETLAKLQEDIAKLQAKLAEARARQKALAIRHQAASSRLDVRRQL  156 (219)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455666677777777777777777777777777777777777776665555554443

Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.

>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []

Probab=83.47  E-value=8  Score=43.76  Aligned_cols=56  Identities=18%  Similarity=0.109  Sum_probs=38.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Q 014471          349 ELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLPFLI-RAILIVHLFV  404 (424)
Q Consensus       349 ELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqaLEQ-qaqLrd~L~e  404 (424)
                      .|..+|..|+.|...++..+...+.++..|...+.+|+...+.+|. ..+||+.|.+
T Consensus        31 ~~~~~i~~l~~elk~~~~~~~~~~~e~~rl~~~~~~~~~~~~~~e~~~~~lr~e~ke   87 (717)
T PF09730_consen   31 YLQQRILELENELKQLRQELSNVQAENERLSQLNQELRKECEDLELERKRLREEIKE   87 (717)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4555666777777777777777777778888888888777777774 3444544443

Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus

>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore

Probab=83.47  E-value=5.3  Score=34.32  Aligned_cols=50  Identities=20%  Similarity=0.062  Sum_probs=28.4

Q ss_pred             HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471          345 RYISELEQKVQTLQTEA-TTLSAQVTILQVSIAELILPIAEFLIVLLPFLI  394 (424)
Q Consensus       345 ~YieELE~KVq~Lq~EN-~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqaLEQ  394 (424)
                      .|-..=|.||..|..-. .....++..|+.++..|..||..|+.+|.....
T Consensus        27 ~YssKHE~KV~~LKksYe~rwek~v~~L~~e~~~l~~E~e~L~~~l~~e~~   77 (87)
T PF12709_consen   27 LYSSKHETKVKALKKSYEARWEKKVDELENENKALKRENEQLKKKLDTERE   77 (87)
T ss_pred             HHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444566666665222 224556666666666666677777666655443

Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].

>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function

Probab=83.43  E-value=9.7  Score=42.12  Aligned_cols=63  Identities=16%  Similarity=0.161  Sum_probs=42.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471          342 RKMRYISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLPFLIRAILIVHLFV  404 (424)
Q Consensus       342 RKK~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqaLEQqaqLrd~L~e  404 (424)
                      +..+-+++|..+|+.|..+...+..++..++.....+..+..+.+...+.+|++..++..+.+
T Consensus       325 ~~~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~l~~k~~~  387 (594)
T PF05667_consen  325 EQEQELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELKLKKKTVE  387 (594)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334455677777777777777777777777777777777777777777777766666655544

>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]

Probab=83.33  E-value=12  Score=37.51  Aligned_cols=31  Identities=29%  Similarity=0.431  Sum_probs=14.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471          348 SELEQKVQTLQTEATTLSAQVTILQVSIAEL  378 (424)
Q Consensus       348 eELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L  378 (424)
                      ++|..|++.++.|+..|..+++.|+.++..+
T Consensus       138 ee~kekl~E~~~EkeeL~~eleele~e~ee~  168 (290)
T COG4026         138 EELKEKLEELQKEKEELLKELEELEAEYEEV  168 (290)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444445555555555444444444333333

>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences

Probab=83.29  E-value=5  Score=36.51  Aligned_cols=51  Identities=27%  Similarity=0.285  Sum_probs=38.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471          344 MRYISELEQKVQTLQTEATTLSAQV--TILQVSIAELILPIAEFLIVLLPFLI  394 (424)
Q Consensus       344 K~YieELE~KVq~Lq~EN~~Ls~Ql--~~Lqren~~L~~EN~ELK~RLqaLEQ  394 (424)
                      ++.+.+|+..+..|+.|...|..++  ..|......|..|+.+|..+|+.|..
T Consensus        85 ~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~  137 (169)
T PF07106_consen   85 REELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLRS  137 (169)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4455677777777777777776665  45777888888888888888888775

TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].

>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion

Probab=83.21  E-value=17  Score=34.41  Aligned_cols=57  Identities=11%  Similarity=-0.027  Sum_probs=40.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471          344 MRYISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLPFLIRAILIV  400 (424)
Q Consensus       344 K~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqaLEQqaqLrd  400 (424)
                      ...++|=..++..|...|+-|+.|+......|..|..++..|+..+..+.++...++
T Consensus        66 l~rLeEEqqR~~~L~qvN~lLReQLEq~~~~N~~L~~dl~klt~~~~~l~~eL~~ke  122 (182)
T PF15035_consen   66 LIRLEEEQQRSEELAQVNALLREQLEQARKANEALQEDLQKLTQDWERLRDELEQKE  122 (182)
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344555566677777778888888888888888888888888777766544444443

>smart00338 BRLZ basic region leucin zipper

Probab=83.17  E-value=8.5  Score=29.94  Aligned_cols=23  Identities=9%  Similarity=0.004  Sum_probs=9.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Q 014471          370 ILQVSIAELILPIAEFLIVLLPF  392 (424)
Q Consensus       370 ~Lqren~~L~~EN~ELK~RLqaL  392 (424)
                      .|+.+...|..+|.+|+.++..|
T Consensus        30 ~Le~~~~~L~~en~~L~~~~~~l   52 (65)
T smart00338       30 ELERKVEQLEAENERLKKEIERL   52 (65)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            33334444444444444444333

>PF06216 RTBV_P46: Rice tungro bacilliform virus P46 protein; InterPro: IPR009347 This family consists of several Rice tungro bacilliform virus P46 proteins

Probab=82.70  E-value=8  Score=39.46  Aligned_cols=50  Identities=26%  Similarity=0.187  Sum_probs=39.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471          345 RYISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLPFLI  394 (424)
Q Consensus       345 ~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqaLEQ  394 (424)
                      .|+=.||-.++....|...|..|+..|+.++..+..+..+.|..|+.|.+
T Consensus        64 ~~~y~~e~e~~sy~~e~~~l~~qvs~l~~~~~~~r~~~~~~~~~~eglre  113 (389)
T PF06216_consen   64 DYIYNKEFERQSYSNEWISLNDQVSHLQHQNSEQRQQIREMREIIEGLRE  113 (389)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            46667888888888888888888888888888888777777777766543

The function of this family is unknown.

>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=82.64  E-value=17  Score=33.12  Aligned_cols=49  Identities=24%  Similarity=0.180  Sum_probs=32.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471          345 RYISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLPFL  393 (424)
Q Consensus       345 ~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqaLE  393 (424)
                      ...++||.+++.|+.++..+..+|..|+..+..|..+...+..+|..+.
T Consensus        14 ~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k   62 (143)
T PF12718_consen   14 DRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAK   62 (143)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4456777777777777777777777777666666666666666655443

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].

>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP

Probab=82.61  E-value=12  Score=29.75  Aligned_cols=44  Identities=27%  Similarity=0.257  Sum_probs=26.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471          347 ISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLL  390 (424)
Q Consensus       347 ieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLq  390 (424)
                      |++|...|+.|..+..+|+..+..|+.+......|-..-..||.
T Consensus         5 id~Ls~dVq~L~~kvdqLs~dv~~lr~~v~~ak~EAaRAN~RlD   48 (56)
T PF04728_consen    5 IDQLSSDVQTLNSKVDQLSSDVNALRADVQAAKEEAARANQRLD   48 (56)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56666666666666666666666666655555555555555553

The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.

>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed

Probab=82.44  E-value=43  Score=34.10  Aligned_cols=80  Identities=15%  Similarity=0.103  Sum_probs=54.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------------HH
Q 014471          324 KRAKRILANRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQ-----------------------------VS  374 (424)
Q Consensus       324 KR~RRiLkNRESAqRSReRKK~YieELE~KVq~Lq~EN~~Ls~Ql~~Lq-----------------------------re  374 (424)
                      |+..-+.+.++.++.-..|-..-.+.||.-+..||.+|..|..+...+.                             ..
T Consensus        50 Kk~~~l~kek~~l~~E~~k~~~~k~KLE~LCRELQk~Nk~lkeE~~~~~~eee~kR~el~~kFq~~L~dIq~~~ee~~~~  129 (309)
T PF09728_consen   50 KKQEQLQKEKDQLQSELSKAILAKSKLESLCRELQKQNKKLKEESKRRAREEEEKRKELSEKFQATLKDIQAQMEEQSER  129 (309)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch
Confidence            4444456666777666666667777888888888888888875433211                             24


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471          375 IAELILPIAEFLIVLLPFLIRAILIVHLF  403 (424)
Q Consensus       375 n~~L~~EN~ELK~RLqaLEQqaqLrd~L~  403 (424)
                      +..+..||..|+.+|..+-.|-.+|+.-.
T Consensus       130 ~~k~~~eN~~L~eKlK~l~eQye~rE~~~  158 (309)
T PF09728_consen  130 NIKLREENEELREKLKSLIEQYELREEHF  158 (309)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45677888888888888777766665433

It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].

>PRK15422 septal ring assembly protein ZapB; Provisional

Probab=82.41  E-value=8.3  Score=32.67  Aligned_cols=52  Identities=19%  Similarity=0.103  Sum_probs=25.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471          350 LEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLPFLIRAILIVHLFVFLT  407 (424)
Q Consensus       350 LE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqaLEQqaqLrd~L~ealt  407 (424)
                      |--+|..|..+|..|..++..+......|..||..||...      ..|.+.|.-.+.
T Consensus        23 LqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~------~~WqerLr~LLG   74 (79)
T PRK15422         23 LQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQ------NGWQERLQALLG   74 (79)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH------HHHHHHHHHHHH
Confidence            3334444444444444444444444445666666665443      445555554443

>PRK00888 ftsB cell division protein FtsB; Reviewed

Probab=82.41  E-value=5.6  Score=34.50  Aligned_cols=24  Identities=21%  Similarity=0.231  Sum_probs=9.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Q 014471          348 SELEQKVQTLQTEATTLSAQVTIL  371 (424)
Q Consensus       348 eELE~KVq~Lq~EN~~Ls~Ql~~L  371 (424)
                      .+++.+++.|+.+|..|..++..|
T Consensus        37 ~~~~~e~~~l~~~n~~L~~eI~~L   60 (105)
T PRK00888         37 AAQQQTNAKLKARNDQLFAEIDDL   60 (105)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHh
Confidence            334444444444444444433333

>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association []

Probab=82.23  E-value=12  Score=37.74  Aligned_cols=6  Identities=67%  Similarity=1.248  Sum_probs=2.7

Q ss_pred             HHHHhh
Q 014471          176 LFNEYM  181 (424)
Q Consensus       176 l~~~ym  181 (424)
                      ||.+||
T Consensus       105 Lf~EY~  110 (325)
T PF08317_consen  105 LFREYY  110 (325)
T ss_pred             HHHHHH
Confidence            444444

>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription

Probab=82.16  E-value=20  Score=33.71  Aligned_cols=53  Identities=17%  Similarity=0.122  Sum_probs=25.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471          348 SELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLPFLIRAILIV  400 (424)
Q Consensus       348 eELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqaLEQqaqLrd  400 (424)
                      ..|+..+..+......|..++..|+.....+..+...|+.+......+.++.+
T Consensus       101 ~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~ar~~~a~a~~~~~~  153 (221)
T PF04012_consen  101 ERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREELKARENAAKAQKKVNE  153 (221)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444444444455555555555555555555555555444444443333

The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].

>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants

Probab=82.14  E-value=25  Score=36.54  Aligned_cols=36  Identities=19%  Similarity=0.283  Sum_probs=15.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471          349 ELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAE  384 (424)
Q Consensus       349 ELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~E  384 (424)
                      .|+.++..|+.+|..|..++..++.++..+..+..+
T Consensus       141 ~l~~~~~~L~~enerL~~e~~~~~~qlE~~v~~K~~  176 (342)
T PF06632_consen  141 RLQAENEHLQKENERLESEANKLLKQLEKFVNAKEE  176 (342)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444444444444444444444444444443333

XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.

>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family

Probab=82.09  E-value=14  Score=34.89  Aligned_cols=46  Identities=22%  Similarity=0.097  Sum_probs=21.2

Q ss_pred             HHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471          350 LEQKVQTLQTEAT------TLSAQVTILQVSIAELILPIAEFLIVLLPFLIR  395 (424)
Q Consensus       350 LE~KVq~Lq~EN~------~Ls~Ql~~Lqren~~L~~EN~ELK~RLqaLEQq  395 (424)
                      |+.=+..||.-..      .|..+...|+.++..|..+|.+|..+++.++++
T Consensus        82 l~~vI~fLq~l~~~~~~~~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~  133 (161)
T TIGR02894        82 LQDVISFLQNLKTTNPSDQALQKENERLKNQNESLQKRNEELEKELEKLRQR  133 (161)
T ss_pred             HHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4555555554332      233344444444444444445554444444443

In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.

>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]

Probab=81.83  E-value=22  Score=39.19  Aligned_cols=60  Identities=13%  Similarity=0.170  Sum_probs=35.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471          334 QSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLPFL  393 (424)
Q Consensus       334 ESAqRSReRKK~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqaLE  393 (424)
                      +.|.+.+..=.+-+.+++..+..|+.|...+.+.+..|+.+...|..||..|...|+.+.
T Consensus       130 ~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r  189 (546)
T KOG0977|consen  130 EKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARAR  189 (546)
T ss_pred             HHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence            344444444444445566666666666666666666666666666666666665555433

>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]

Probab=81.68  E-value=8.4  Score=45.18  Aligned_cols=68  Identities=21%  Similarity=0.189  Sum_probs=50.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471          324 KRAKRILANRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLPFLI  394 (424)
Q Consensus       324 KR~RRiLkNRESAqRSReRKK~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqaLEQ  394 (424)
                      |..+.+|-||.   .--.|+...+.+|+.+.+++....+.+..++..|.+....|+.||..|-.+|+.|-+
T Consensus       491 knlnk~L~~r~---~elsrl~a~~~elkeQ~kt~~~qye~~~~k~eeLe~~l~~lE~ENa~LlkqI~~Lk~  558 (1195)
T KOG4643|consen  491 KNLNKSLNNRD---LELSRLHALKNELKEQYKTCDIQYELLSNKLEELEELLGNLEEENAHLLKQIQSLKT  558 (1195)
T ss_pred             HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence            44444555543   344577788888888888888888888888888888888888888888777776654

>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization

Probab=81.57  E-value=12  Score=29.06  Aligned_cols=16  Identities=13%  Similarity=0.075  Sum_probs=5.8

Q ss_pred             HHHHHHHHHHHHHHHH
Q 014471          374 SIAELILPIAEFLIVL  389 (424)
Q Consensus       374 en~~L~~EN~ELK~RL  389 (424)
                      ++..|..++..|+..+
T Consensus        41 en~~L~~~~~~L~~~~   56 (64)
T PF00170_consen   41 ENEELKKELEQLKKEI   56 (64)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            3333333333333333

; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=81.56  E-value=9.5  Score=37.61  Aligned_cols=47  Identities=13%  Similarity=0.264  Sum_probs=39.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471          346 YISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLPF  392 (424)
Q Consensus       346 YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqaL  392 (424)
                      -+.+|..++..|+.|+.+|+-+++.++.+...|....++|-..|..+
T Consensus        55 ~~~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~dld~r  101 (263)
T PRK10803         55 LLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIYLQIDSL  101 (263)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34688999999999999999999999999999998888887776654

>PF14915 CCDC144C: CCDC144C protein coiled-coil region

Probab=81.34  E-value=33  Score=35.42  Aligned_cols=68  Identities=16%  Similarity=0.024  Sum_probs=56.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471          334 QSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLPFLIRAILIVH  401 (424)
Q Consensus       334 ESAqRSReRKK~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqaLEQqaqLrd~  401 (424)
                      ++++|-....+..+.++|...+.-+........+-..++.+...|..||--|+++|...-..+-.++.
T Consensus       182 E~~QrdL~Qtq~q~KE~e~m~qne~~kv~k~~~Kqes~eERL~QlqsEN~LLrQQLddA~~K~~~kek  249 (305)
T PF14915_consen  182 ESVQRDLSQTQCQIKEIEHMYQNEQDKVNKYIGKQESLEERLSQLQSENMLLRQQLDDAHNKADNKEK  249 (305)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            78888888889999999998888887777777788888899999999999999888877776666653

>PF05837 CENP-H: Centromere protein H (CENP-H); InterPro: IPR008426 Chromosome segregation in eukaryotes requires the kinetochore, a multi-protein structure that assembles on centromeric DNA, and which acts to link chromosomes to spindle microtubules

Probab=81.02  E-value=17  Score=31.47  Aligned_cols=39  Identities=21%  Similarity=0.175  Sum_probs=17.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471          355 QTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLPFL  393 (424)
Q Consensus       355 q~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqaLE  393 (424)
                      ..++.+...+..++..++.++..+...|.+|-.+++.+.
T Consensus         6 ~~~~~~~~~l~~~L~~v~~~~l~l~~~n~el~~el~~l~   44 (106)
T PF05837_consen    6 LNLQQESRSLQEKLSDVEKKRLRLKRRNQELAQELLELA   44 (106)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444444444444444444444444444444444333

Kinetochore structure and composition is highly conserved among vertebrates. The inner kinetochore is essential for kinetochore assembly, and is involved in chromosome segregation via regulation of the spindle. Inner kinetochore components include the multi-subunit CENP-H/I complex, which may function, in part, in directing centromere protein A (CENP-A) deposition to centromeres, where CENP-A is a centromere-specific histone H3 variant required for the organisation of centromeric chromatin during interphase. The CENP-H/I complex contains three functional classes of proteins [, ]: CENP-H class (includes CENP-H, -I, -K, -L) CENP-M class (includes CENP-M) CENP-O class (includes CENP-O, -P, -Q, -R, -50) CENP-H is required for the localisation of CENP-C, but not CENP-A, to the centromere. However, it may be involved in the incorporation of newly synthesised CENP-A into centromeres via its interaction with the CENP-A/CENP-HI complex. CENP-H contains a coiled-coil structure and a nuclear localisation signal. CENP-H is specifically and constitutively localised in kinetochores throughout the cell cycle, and may play a role in kinetochore organisation and function throughout the cell cycle []. Studies show that CENP-H may be associated with certain human cancers [, ]. This entry also includes Kinetochore protein Fta3 which is a subunit of the Sim4 complex. This complex is required for loading the DASH complex onto the kinetochore via interaction with dad1. Fta2, Fta3 and Fta4 associate with the central core and inner repeat region of the centromere [].; GO: 0043515 kinetochore binding, 0007059 chromosome segregation, 0051301 cell division, 0000777 condensed chromosome kinetochore, 0005634 nucleus

>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold)

Probab=80.92  E-value=36  Score=30.39  Aligned_cols=44  Identities=30%  Similarity=0.215  Sum_probs=17.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471          348 SELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLP  391 (424)
Q Consensus       348 eELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqa  391 (424)
                      ++|-.+-..|.+-+..|.+|...+.+++..|..+..++...|..
T Consensus        33 ~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~le~   76 (107)
T PF09304_consen   33 GELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEARRNLED   76 (107)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333333333333333333344444444444444444433

The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.

>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=80.73  E-value=55  Score=39.35  Aligned_cols=12  Identities=33%  Similarity=0.603  Sum_probs=8.7

Q ss_pred             CccccccccccC
Q 014471          251 RHCRSVSMDSYM  262 (424)
Q Consensus       251 rH~rS~S~Ds~~  262 (424)
                      |..|-+.+|+.+
T Consensus       736 rr~RVvTL~G~l  747 (1293)
T KOG0996|consen  736 RRWRVVTLDGSL  747 (1293)
T ss_pred             CceEEEEeccee
Confidence            334589999985

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=80.63  E-value=8.6  Score=37.92  Aligned_cols=41  Identities=12%  Similarity=0.182  Sum_probs=22.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471          344 MRYISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAE  384 (424)
Q Consensus       344 K~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~E  384 (424)
                      +..|++|...|..|.-++.++.-++..++++...|-.+...
T Consensus        60 ~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~dld~  100 (263)
T PRK10803         60 QQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIYLQIDS  100 (263)
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44555555555555555555555555555555555554443

>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]

Probab=80.52  E-value=21  Score=40.45  Aligned_cols=66  Identities=20%  Similarity=0.253  Sum_probs=46.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471          328 RILANRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQ---VTILQVSIAELILPIAEFLIVLLPFLIR  395 (424)
Q Consensus       328 RiLkNRESAqRSReRKK~YieELE~KVq~Lq~EN~~Ls~Q---l~~Lqren~~L~~EN~ELK~RLqaLEQq  395 (424)
                      -+|.-+..||--|-|-.+.+.  |.+-+.|.+.-.-|..+   .+.|+.+...|++|..+||.++.+||.+
T Consensus       128 svLteqVeaQgEKIrDLE~ci--e~kr~kLnatEEmLQqellsrtsLETqKlDLmaevSeLKLkltalEke  196 (861)
T KOG1899|consen  128 SVLTEQVEAQGEKIRDLETCI--EEKRNKLNATEEMLQQELLSRTSLETQKLDLMAEVSELKLKLTALEKE  196 (861)
T ss_pred             HHHHHHHHHhhhhHHHHHHHH--HHHHhhhchHHHHHHHHHHhhhhHHHHHhHHHHHHHHhHHHHHHHHHH
Confidence            478889999988888777543  33333443333333333   3678888899999999999999999843

>cd07666 BAR_SNX7 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 7

Probab=80.50  E-value=35  Score=33.87  Aligned_cols=70  Identities=7%  Similarity=0.007  Sum_probs=43.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHH
Q 014471          325 RAKRILANRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLPFLIRA--ILIVHL  402 (424)
Q Consensus       325 R~RRiLkNRESAqRSReRKK~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqaLEQqa--qLrd~L  402 (424)
                      -+|-.++-|+-+|..-++|.+|+.-+...-.       .|..++..++.+....   ++.||..++.++++.  -++..+
T Consensus       150 slK~vlk~R~~~Q~~le~k~e~l~k~~~dr~-------~~~~ev~~~e~kve~a---~~~~k~e~~Rf~~~k~~D~k~~~  219 (243)
T cd07666         150 TLMGVIKRRDQIQAELDSKVEALANKKADRD-------LLKEEIEKLEDKVECA---NNALKADWERWKQNMQTDLRSAF  219 (243)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhhhHH-------HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence            3566788888888888888887776543223       4444555555444443   666888888877543  344444


Q ss_pred             HH
Q 014471          403 FV  404 (424)
Q Consensus       403 ~e  404 (424)
                      ++
T Consensus       220 ~~  221 (243)
T cd07666         220 TD  221 (243)
T ss_pred             HH
Confidence            44

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX7 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.

>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans

Probab=80.46  E-value=35  Score=31.92  Aligned_cols=45  Identities=20%  Similarity=0.097  Sum_probs=29.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Q 014471          355 QTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLPFL-IRAILI  399 (424)
Q Consensus       355 q~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqaLE-QqaqLr  399 (424)
                      ..+..|+..|..++..|+.++..|....+.+..++..++ +..+|+
T Consensus        85 d~~~~e~k~L~~~v~~Le~e~r~L~~~~~~~~~q~~rlee~e~~l~  130 (158)
T PF09744_consen   85 DQWRQERKDLQSQVEQLEEENRQLELKLKNLSDQSSRLEEREAELK  130 (158)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccchhHHHHH
Confidence            366677777777888887777777766666666555444 344443

Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.

>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=80.44  E-value=24  Score=40.86  Aligned_cols=13  Identities=31%  Similarity=0.526  Sum_probs=7.6

Q ss_pred             cCCCCCCCCCCCC
Q 014471           42 LDSLPPLSPSMSS   54 (424)
Q Consensus        42 ~dslpplsp~~~~   54 (424)
                      ++.++||+|-.+.
T Consensus       115 ls~~qpL~~a~p~  127 (1118)
T KOG1029|consen  115 LSYSQPLPPAAPR  127 (1118)
T ss_pred             cCcCCCCCccccc
Confidence            5666777654433

>PF04340 DUF484: Protein of unknown function, DUF484; InterPro: IPR007435 This family consists of several proteins of uncharacterised function

Probab=80.16  E-value=8.5  Score=36.55  Aligned_cols=45  Identities=16%  Similarity=0.158  Sum_probs=30.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471          346 YISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLPFLI  394 (424)
Q Consensus       346 YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqaLEQ  394 (424)
                      =|+=.|++++.|+.+|.+|+.++..|..    ...+|..+-.++..++.
T Consensus        41 avSL~erQ~~~LR~~~~~L~~~l~~Li~----~Ar~Ne~~~~~~~~l~l   85 (225)
T PF04340_consen   41 AVSLVERQLERLRERNRQLEEQLEELIE----NARENEAIFQRLHRLVL   85 (225)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
Confidence            4567788888888888888888877653    23455555555554443

; PDB: 3E98_B.

>TIGR00414 serS seryl-tRNA synthetase

Probab=80.02  E-value=27  Score=36.73  Aligned_cols=46  Identities=22%  Similarity=0.211  Sum_probs=26.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Q 014471          350 LEQKVQTLQTEATTLSAQVTILQVS----IAELILPIAEFLIVLLPFLIR  395 (424)
Q Consensus       350 LE~KVq~Lq~EN~~Ls~Ql~~Lqre----n~~L~~EN~ELK~RLqaLEQq  395 (424)
                      |..+++.|+.|-..++.++..+...    ...|..+.++|+.+|..++++
T Consensus        42 ~~~~~~~l~~erN~~sk~i~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~   91 (418)
T TIGR00414        42 LLSEIEELQAKRNELSKQIGKAKGQKKDKIEEIKKELKELKEELTELSAA   91 (418)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHH
Confidence            3444555555555555555543221    446666777777777777654

This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	424
1dh3_A	55	Transcription factor CREB; protein-DNA complex, tr	4e-12
1t2k_D	61	Cyclic-AMP-dependent transcription factor ATF-2; p	1e-10
1jnm_A	62	Proto-oncogene C-JUN; BZIP, protein-DNA complex, t	2e-09
3a5t_A	107	Transcription factor MAFG; protein-DNA complex, BZ	1e-08
2wt7_A	63	Proto-oncogene protein C-FOS; transcription, trans	2e-08
2wt7_B	90	Transcription factor MAFB; transcription, transcri	3e-07
2dgc_A	63	Protein (GCN4); basic domain, leucine zipper, DNA	2e-06
1ci6_A	63	Transcription factor ATF-4; BZIP; 2.60A {Homo sapi	5e-06
1hjb_A	87	Ccaat/enhancer binding protein beta; transcription	5e-05
1gd2_E	70	Transcription factor PAP1; basic leucine zipper, p	9e-05
1gu4_A	78	CAAT/enhancer binding protein beta; transcription/	1e-04

>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1 Length = 55

 Score = 59.7 bits (145), Expect = 4e-12
 Identities = 16/49 (32%), Positives = 29/49 (59%)

Query: 324 KRAKRILANRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQ 372
           KR  R++ NR++A  S+ +K  Y+  LE +V  L+ +  TL  ++  L+
Sbjct: 1   KREVRLMKNREAARESRRKKKEYVKSLENRVAVLENQNKTLIEELKALK 49

>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1 Length = 61

 Score = 55.8 bits (135), Expect = 1e-10
 Identities = 18/55 (32%), Positives = 36/55 (65%)

Query: 324 KRAKRILANRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQVSIAEL 378
           KR K +  NR +A+RS++++  ++  LE+K + L +    L ++VT+L+  +A+L
Sbjct: 1   KRRKFLERNRAAASRSRQKRKVWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQL 55

>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A Length = 62

 Score = 52.4 bits (126), Expect = 2e-09
 Identities = 18/55 (32%), Positives = 39/55 (70%)

Query: 324 KRAKRILANRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQVSIAEL 378
           K  ++ + NR +A++S++RK+  I+ LE+KV+TL+ + + L++   +L+  +A+L
Sbjct: 1   KAERKRMRNRIAASKSRKRKLERIARLEEKVKTLKAQNSELASTANMLREQVAQL 55

>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor, acetylation, DNA-binding, isopeptide bond, nucleus; 2.80A {Mus musculus} Length = 107

 Score = 51.6 bits (123), Expect = 1e-08
 Identities = 20/89 (22%), Positives = 39/89 (43%), Gaps = 6/89 (6%)

Query: 296 EFNGEFNDAELKKIWANE------KLAEIALSDPKRAKRILANRQSAARSKERKMRYISE 349
                  D EL  +   E       L++  +   K+ +R L NR  AA  + +++    E
Sbjct: 3   HMGTSLTDEELVTMSVRELNQHLRGLSKEEIIQLKQRRRTLKNRGYAASCRVKRVTQKEE 62

Query: 350 LEQKVQTLQTEATTLSAQVTILQVSIAEL 378
           LE++   LQ E   L+++   +++ +  L
Sbjct: 63  LEKQKAELQQEVEKLASENASMKLELDAL 91

>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D Length = 63

 Score = 49.8 bits (119), Expect = 2e-08
 Identities = 13/55 (23%), Positives = 25/55 (45%)

Query: 324 KRAKRILANRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQVSIAEL 378
           KR  R   N+ +AA+ + R+      L+ +   L+ E + L  ++  L     +L
Sbjct: 2   KRRIRRERNKMAAAKCRNRRRELTDTLQAETDQLEDEKSALQTEIANLLKEKEKL 56

>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A Length = 90

 Score = 47.3 bits (112), Expect = 3e-07
 Identities = 12/66 (18%), Positives = 25/66 (37%)

Query: 313 EKLAEIALSDPKRAKRILANRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQ 372
               +  +   K+ +R L NR  A   + ++++    LE +   L  +   L  +V+ L 
Sbjct: 16  RGFTKDEVIRLKQKRRTLKNRGYAQSCRYKRVQQKHHLENEKTQLIQQVEQLKQEVSRLA 75

Query: 373 VSIAEL 378
                 
Sbjct: 76  RERDAY 81

>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D Length = 63

 Score = 43.7 bits (103), Expect = 2e-06
 Identities = 19/52 (36%), Positives = 31/52 (59%), Gaps = 1/52 (1%)

Query: 321 SDPKRAKRILANRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQ 372
           SDP   KR   N ++A RS+ RK++ + +LE KV+ L ++   L  +V  L+
Sbjct: 7   SDPAALKR-ARNTEAARRSRARKLQRMKQLEDKVEELLSKNYHLENEVARLK 57

>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1 Length = 63

 Score = 43.1 bits (102), Expect = 5e-06
 Identities = 12/55 (21%), Positives = 25/55 (45%)

Query: 324 KRAKRILANRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQVSIAEL 378
           K+ K++  N+ +A R +++K      L  + + L+ +   L  +   L   I  L
Sbjct: 2   KKLKKMEQNKTAATRYRQKKRAEQEALTGECKELEKKNEALKERADSLAKEIQYL 56

>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1 Length = 87

 Score = 40.7 bits (95), Expect = 5e-05
 Identities = 12/57 (21%), Positives = 22/57 (38%)

Query: 322 DPKRAKRILANRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQVSIAEL 378
             +   R   N  +  +S+++      E + KV  L  E   L  +V  L   ++ L
Sbjct: 13  SDEYKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTL 69

>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1 Length = 70

 Score = 39.6 bits (92), Expect = 9e-05
 Identities = 13/59 (22%), Positives = 28/59 (47%)

Query: 320 LSDPKRAKRILANRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQVSIAEL 378
                 +KR   NR +    ++RK  ++  LE +V TL+   ++ + +   L+  + +L
Sbjct: 4   SDQEPSSKRKAQNRAAQRAFRKRKEDHLKALETQVVTLKELHSSTTLENDQLRQKVRQL 62

>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A Length = 78

 Score = 39.5 bits (92), Expect = 1e-04
 Identities = 14/58 (24%), Positives = 25/58 (43%), Gaps = 1/58 (1%)

Query: 321 SDPKRAKRILANRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQVSIAEL 378
           SD  + +R   N  +  +S+++      E + KV  L  E   L  +V  L   ++ L
Sbjct: 13  SDEYKIRRE-RNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTL 69

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	424
1dh3_A	55	Transcription factor CREB; protein-DNA complex, tr	99.48
2wt7_A	63	Proto-oncogene protein C-FOS; transcription, trans	99.27
1t2k_D	61	Cyclic-AMP-dependent transcription factor ATF-2; p	99.26
1jnm_A	62	Proto-oncogene C-JUN; BZIP, protein-DNA complex, t	99.12
2dgc_A	63	Protein (GCN4); basic domain, leucine zipper, DNA	98.97
1gd2_E	70	Transcription factor PAP1; basic leucine zipper, p	98.92
1ci6_A	63	Transcription factor ATF-4; BZIP; 2.60A {Homo sapi	98.89
1gu4_A	78	CAAT/enhancer binding protein beta; transcription/	98.37
1hjb_A	87	Ccaat/enhancer binding protein beta; transcription	98.36
3a5t_A	107	Transcription factor MAFG; protein-DNA complex, BZ	98.26
2wt7_B	90	Transcription factor MAFB; transcription, transcri	98.2
2oqq_A	42	Transcription factor HY5; homodimer leucine zipper	97.69
1skn_P	92	DNA-binding domain of SKN-1; complex (transcriptio	96.35
2jee_A	81	YIIU; FTSZ, septum, coiled-coil, cell division, ce	96.29
2w6a_A	63	ARF GTPase-activating protein GIT1; PIX, zinc, sig	94.94
3hnw_A	138	Uncharacterized protein; coiled-coil, structural g	93.89
3efg_A	78	Protein SLYX homolog; xanthomonas campestris PV. c	93.67
3a7p_A	152	Autophagy protein 16; coiled-coil, coiled coil, cy	92.37
2oa5_A	110	Hypothetical protein BQLF2; MHR28B, NESG, structur	92.27
3o0z_A	168	RHO-associated protein kinase 1; coiled-coil, tran	92.25
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	92.24
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	91.77
3he5_A	49	Synzip1; heterodimeric coiled-coil, de novo protei	91.72
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	91.4
1deb_A	54	APC protein, adenomatous polyposis coli protein; c	90.97
3hnw_A	138	Uncharacterized protein; coiled-coil, structural g	90.03
2jee_A	81	YIIU; FTSZ, septum, coiled-coil, cell division, ce	89.91
3swy_A	46	Cyclic nucleotide-gated cation channel alpha-3; co	89.84
4ath_A	83	MITF, microphthalmia-associated transcription fact	89.65
4emc_A	190	Monopolin complex subunit CSM1; RWD domain, kineto	89.13
2oxj_A	34	Hybrid alpha/beta peptide based on the GCN4-P1 Se	88.96
3cve_A	72	Homer protein homolog 1; coiled coil, alternative	88.94
3s9g_A	104	Protein hexim1; cyclin T-binding domain (TBD), cyc	88.82
2oqq_A	42	Transcription factor HY5; homodimer leucine zipper	88.8
3u1c_A	101	Tropomyosin alpha-1 chain; anti-parallel coiled co	88.73
3m48_A	33	General control protein GCN4; leucine zipper, synt	88.65
1go4_E	100	MAD1 (mitotic arrest deficient)-like 1; mitotic sp	88.3
3cvf_A	79	Homer-3, homer protein homolog 3; coiled coil, alt	87.86
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	87.66
4ati_A	118	MITF, microphthalmia-associated transcription fact	87.18
1kd8_B	36	GABH BLL, GCN4 acid base heterodimer base-D12LA16L	87.06
3c3f_A	34	Alpha/beta peptide with the GCN4-PLI SIDE chain S	86.94
3swf_A	74	CGMP-gated cation channel alpha-1; coiled-coil, as	86.51
3na7_A	256	HP0958; flagellar biogenesis, flagellum export, C4	86.49
3s4r_A	93	Vimentin; alpha-helix, cytoskeleton, intermediate	86.46
2v66_B	111	Nuclear distribution protein NUDE-like 1; structur	86.31
1kd8_A	36	GABH AIV, GCN4 acid base heterodimer acid-D12IA16V	86.02
1nkp_B	83	MAX protein, MYC proto-oncogene protein; transcrip	85.83
3mq7_A	121	Bone marrow stromal antigen 2; HIV, antiviral prot	85.64
3c3g_A	33	Alpha/beta peptide with the GCN4-PLI SIDE chain S	85.6
1wle_A	501	Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bo	85.06
1wlq_A	83	Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2z	84.51
2bni_A	34	General control protein GCN4; four helix bundle, a	84.49
3cvf_A	79	Homer-3, homer protein homolog 3; coiled coil, alt	84.32
2wt7_B	90	Transcription factor MAFB; transcription, transcri	84.31
3m91_A	51	Proteasome-associated ATPase; coil COIL alpha heli	84.08
1t2k_D	61	Cyclic-AMP-dependent transcription factor ATF-2; p	84.06
2v71_A	189	Nuclear distribution protein NUDE-like 1; developm	83.94
3ghg_A	562	Fibrinogen alpha chain; triple-stranded coiled coi	83.81
2wq1_A	33	General control protein GCN4; TAA, nucleus, coiled	83.77
2hy6_A	34	General control protein GCN4; protein design, para	83.65
1nlw_A	80	MAD protein, MAX dimerizer; transcription factor,	83.53
2yy0_A	53	C-MYC-binding protein; conserved hypothetical prot	83.5
1uo4_A	34	General control protein GCN4; four helix bundle, c	83.05
2kz5_A	91	Transcription factor NF-E2 45 kDa subunit; structu	82.91
1ik9_A	213	DNA repair protein XRCC4; DNA END joining, double-	82.79
1t6f_A	37	Geminin; coiled-coil, cell cycle; 1.47A {Synthetic	82.55
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	82.55
3u59_A	101	Tropomyosin beta chain; muscle contraction, actin,	82.46
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	82.17
3vmx_A	48	Voltage-gated hydrogen channel 1; coiled-coil, ION	82.06
2ve7_C	250	Kinetochore protein NUF2, kinetochore protein SPC;	82.02
2v4h_A	110	NF-kappa-B essential modulator; transcription, met	80.17
2fic_A	251	Bridging integrator 1; BAR domain, homodimer, coil	80.07
3m9b_A	251	Proteasome-associated ATPase; coil COIL with 5 bet	80.06

>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1

Probab=99.48  E-value=4.1e-14  Score=107.70  Aligned_cols=52  Identities=31%  Similarity=0.515  Sum_probs=48.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471          324 KRAKRILANRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQVSI  375 (424)
Q Consensus       324 KR~RRiLkNRESAqRSReRKK~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren  375 (424)
                      ||++|+++||+||++||+||++|+++||.+|..|+.||..|..++..|+..+
T Consensus         1 kr~rR~~~NResA~rSR~RKk~~~~~LE~~v~~L~~eN~~L~~~~~~L~~~~   52 (55)
T 1dh3_A            1 KREVRLMKNREAARESRRKKKEYVKSLENRVAVLENQNKTLIEELKALKDLY   52 (55)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred             ChHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            6899999999999999999999999999999999999999999999887543

>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D

Probab=99.27  E-value=2.4e-11  Score=94.16  Aligned_cols=58  Identities=22%  Similarity=0.327  Sum_probs=52.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471          323 PKRAKRILANRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQVSIAELIL  380 (424)
Q Consensus       323 pKR~RRiLkNRESAqRSReRKK~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~  380 (424)
                      +||.+|+.+||++|++||+||+.|+.+||.+|..|+.+|..|..++..|+.+...|..
T Consensus         1 Ekr~rrrerNR~AA~rcR~rKk~~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~   58 (63)
T 2wt7_A            1 EKRRIRRERNKMAAAKCRNRRRELTDTLQAETDQLEDEKSALQTEIANLLKEKEKLEF   58 (63)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5899999999999999999999999999999999999999999998877766655543

>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1

Probab=99.26  E-value=2.1e-11  Score=93.56  Aligned_cols=57  Identities=32%  Similarity=0.485  Sum_probs=51.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471          324 KRAKRILANRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQVSIAELIL  380 (424)
Q Consensus       324 KR~RRiLkNRESAqRSReRKK~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~  380 (424)
                      ||.+|+.+||++|++||+||++|+.+||.+|..|+.+|..|..++..|+.++..|..
T Consensus         1 kR~~r~erNr~AA~k~R~rKk~~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~   57 (61)
T 1t2k_D            1 KRRKFLERNRAAASRSRQKRKVWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQ   57 (61)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            688999999999999999999999999999999999999999999887776666543

>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A

Probab=99.12  E-value=1.5e-10  Score=89.17  Aligned_cols=56  Identities=32%  Similarity=0.558  Sum_probs=49.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471          324 KRAKRILANRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQVSIAELI  379 (424)
Q Consensus       324 KR~RRiLkNRESAqRSReRKK~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~  379 (424)
                      |+.+|..+||++|++||+||+.|+.+||.+|..|+.+|..|..++..|+.++..|.
T Consensus         1 K~errr~rNr~AA~k~R~rKk~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk   56 (62)
T 1jnm_A            1 KAERKRMRNRIAASKSRKRKLERIARLEEKVKTLKAQNSELASTANMLREQVAQLK   56 (62)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             ChHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45678899999999999999999999999999999999999999888776665543

>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D

Probab=98.97  E-value=9.2e-10  Score=85.80  Aligned_cols=53  Identities=34%  Similarity=0.504  Sum_probs=42.9

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471          322 DPKRAKRILANRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQVSI  375 (424)
Q Consensus       322 DpKR~RRiLkNRESAqRSReRKK~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren  375 (424)
                      |+...|| .+||+||++||+||++|+.+||.+|..|+.+|..|..++..|..+.
T Consensus         8 d~~~~KR-~rNreAArrsR~RK~~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l   60 (63)
T 2dgc_A            8 DPAALKR-ARNTEAARRSRARKLQRMKQLEDKVEELLSKNYHLENEVARLKKLV   60 (63)
T ss_dssp             ---CHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred             cHHHHHH-HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333344 5699999999999999999999999999999999998888776543

>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1

Probab=98.92  E-value=2.8e-09  Score=85.03  Aligned_cols=66  Identities=20%  Similarity=0.212  Sum_probs=58.1

Q ss_pred             cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471          321 SDPKRAKRILANRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFL  386 (424)
Q Consensus       321 ~DpKR~RRiLkNRESAqRSReRKK~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK  386 (424)
                      +++...||...||.+++..|+||.+||.+||.+|..|+.++..|..++..|..++..|..||.+||
T Consensus         5 ~~~~~~kR~~qNR~AQRafReRK~~~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~El~~lr   70 (70)
T 1gd2_E            5 DQEPSSKRKAQNRAAQRAFRKRKEDHLKALETQVVTLKELHSSTTLENDQLRQKVRQLEEELRILK   70 (70)
T ss_dssp             CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHC-
T ss_pred             ccchHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            355567899999999999999999999999999999999999988888888888888888887764

>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1

Probab=98.89  E-value=3.5e-09  Score=82.26  Aligned_cols=57  Identities=21%  Similarity=0.265  Sum_probs=46.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471          324 KRAKRILANRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQVSIAELIL  380 (424)
Q Consensus       324 KR~RRiLkNRESAqRSReRKK~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~  380 (424)
                      |+.++..+||.+|+|+|+||+.++.+||.+++.|+.+|..|..++..|+.++..|..
T Consensus         2 k~~rKr~rNr~AA~R~R~KKk~~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~   58 (63)
T 1ci6_A            2 KKLKKMEQNKTAATRYRQKKRAEQEALTGECKELEKKNEALKERADSLAKEIQYLKD   58 (63)
T ss_dssp             ------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            577888999999999999999999999999999999999999999888777666543

>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A

Probab=98.37  E-value=2.2e-06  Score=69.60  Aligned_cols=59  Identities=20%  Similarity=0.189  Sum_probs=51.1

Q ss_pred             cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471          321 SDPKRAKRILANRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQVSIAELI  379 (424)
Q Consensus       321 ~DpKR~RRiLkNRESAqRSReRKK~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~  379 (424)
                      .|++-..|-.+|.++|++||++++....+++.+|..|+.||..|..+|..|+.++..|.
T Consensus        12 ~d~~Y~~rR~rNN~AakrSR~krk~r~~e~~~r~~~L~~eN~~L~~~v~~L~~E~~~Lr   70 (78)
T 1gu4_A           12 HSDEYKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTLR   70 (78)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45555666789999999999999999999999999999999999999988777666554

>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1

Probab=98.36  E-value=2.2e-06  Score=70.85  Aligned_cols=61  Identities=20%  Similarity=0.154  Sum_probs=52.3

Q ss_pred             cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471          321 SDPKRAKRILANRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQVSIAELILP  381 (424)
Q Consensus       321 ~DpKR~RRiLkNRESAqRSReRKK~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~E  381 (424)
                      .|++-..|..+|.++|++||++++....+++.+|..|+.||..|..+|..|+.++..|..-
T Consensus        12 ~d~~Y~~rR~rNN~AarrSR~krk~r~~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~l   72 (87)
T 1hjb_A           12 HSDEYKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTLRNL   72 (87)
T ss_dssp             TSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4566666678999999999999999999999999999999999999998877666655443

>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor, acetylation, DNA-binding, isopeptide bond, nucleus; 2.80A {Mus musculus}

Probab=98.26  E-value=2.3e-08  Score=85.62  Aligned_cols=83  Identities=22%  Similarity=0.261  Sum_probs=54.4

Q ss_pred             CHHHHhhhhchhHHHHhhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471          302 NDAELKKIWANEKLAEIALSDPKRAKRILANRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQVSIAELILP  381 (424)
Q Consensus       302 s~~e~KKi~~~~~LaElAl~DpKR~RRiLkNRESAqRSReRKK~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~E  381 (424)
                      +-.|++..+.  .|..--...-|.+||.++||.+|+.+|.||+..+++||.++..|+.+...|..++.       .|..|
T Consensus        17 ~v~elN~~L~--~Ls~~e~~~lK~~RR~lKNR~yAq~CR~rk~~~~~~LE~e~~~L~~e~e~L~~En~-------~l~~E   87 (107)
T 3a5t_A           17 SVRELNQHLR--GLSKEEIIQLKQRRRTLKNRGYAASCRVKRVTQKEELEKQKAELQQEVEKLASENA-------SMKLE   87 (107)
T ss_dssp             CHHHHHHTTT--TCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSTTTTTTSTTS-------HHHHT
T ss_pred             CHHHHHHHHh--CCCHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHH
Confidence            3456666553  23322233568999999999999999999999999999988877766555555444       44444


Q ss_pred             HHHHHHHHHHHH
Q 014471          382 IAEFLIVLLPFL  393 (424)
Q Consensus       382 N~ELK~RLqaLE  393 (424)
                      ...||.++++|.
T Consensus        88 ~~~lk~k~e~L~   99 (107)
T 3a5t_A           88 LDALRSKYEALQ   99 (107)
T ss_dssp             TTSSSSCC----
T ss_pred             HHHHHHHHHHHH
Confidence            444555554443

>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A

Probab=98.20  E-value=7e-06  Score=68.45  Aligned_cols=81  Identities=16%  Similarity=0.200  Sum_probs=55.3

Q ss_pred             HHHHhhhhchhHHHHhhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471          303 DAELKKIWANEKLAEIALSDPKRAKRILANRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQVSIAELILPI  382 (424)
Q Consensus       303 ~~e~KKi~~~~~LaElAl~DpKR~RRiLkNRESAqRSReRKK~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN  382 (424)
                      -.|++..+.  .|..--...-|..||-++||-+|+.+|.||...+.+||..+..|+.+...|..+       +..+..|.
T Consensus         8 VreLN~~L~--gls~eev~~lKq~RRtlKNRgyAq~CR~Kr~~q~~~LE~e~~~L~~e~~~L~~e-------~~~~~~e~   78 (90)
T 2wt7_B            8 VRELNRHLR--GFTKDEVIRLKQKRRTLKNRGYAQSCRYKRVQQKHHLENEKTQLIQQVEQLKQE-------VSRLARER   78 (90)
T ss_dssp             HHHHHTTCT--TCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHH
T ss_pred             HHHHHHHHc--CCCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHH
Confidence            455555553  222212235788899999999999999999999999998888776665555554       44455555


Q ss_pred             HHHHHHHHHH
Q 014471          383 AEFLIVLLPF  392 (424)
Q Consensus       383 ~ELK~RLqaL  392 (424)
                      ..+|.++++|
T Consensus        79 d~~k~k~~~L   88 (90)
T 2wt7_B           79 DAYKVKSEKL   88 (90)
T ss_dssp             HHHHHHHHTT
T ss_pred             HHHHHHHHHh
Confidence            5666665543

>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}

Probab=97.69  E-value=6.4e-05  Score=54.88  Aligned_cols=37  Identities=30%  Similarity=0.421  Sum_probs=33.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471          344 MRYISELEQKVQTLQTEATTLSAQVTILQVSIAELIL  380 (424)
Q Consensus       344 K~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~  380 (424)
                      |+|+.+||.+++.|+..|.+|..++..||++|.+|..
T Consensus         2 KaYl~eLE~r~k~le~~naeLEervstLq~EN~mLRq   38 (42)
T 2oqq_A            2 SAYLSELENRVKDLENKNSELEERLSTLQNENQMLRH   38 (42)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence            6899999999999999999999999999988887754

>1skn_P DNA-binding domain of SKN-1; complex (transcription factor/DNA), transcription/DNA complex; HET: DNA LDA; 2.50A {Caenorhabditis elegans} SCOP: a.37.1.1

Probab=96.35  E-value=0.0012  Score=55.24  Aligned_cols=54  Identities=20%  Similarity=0.284  Sum_probs=43.1

Q ss_pred             CCCHHHHhhhhchhHHHHhhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471          300 EFNDAELKKIWANEKLAEIALSDPKRAKRILANRQSAARSKERKMRYISELEQK  353 (424)
Q Consensus       300 e~s~~e~KKi~~~~~LaElAl~DpKR~RRiLkNRESAqRSReRKK~YieELE~K  353 (424)
                      .++-.|.+..+....|.+--+...|.+||-.+||.+|++.|+||...+++|+..
T Consensus        38 ~lpv~efn~lLk~~~Ls~~Ql~~ir~~RRR~KNr~AA~~CRkrK~~~~d~l~~~   91 (92)
T 1skn_P           38 EMSLSELQQVLKNESLSEYQRQLIRKIRRRGKNKVAARTCRQRRTDRHDKMSHY   91 (92)
T ss_dssp             HSCHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC---
T ss_pred             HCcHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhcc
Confidence            345567777777777776666778999999999999999999999999988764

>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}

Probab=96.29  E-value=0.046  Score=44.86  Aligned_cols=43  Identities=21%  Similarity=0.155  Sum_probs=33.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471          345 RYISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLI  387 (424)
Q Consensus       345 ~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~  387 (424)
                      .-++.||.||+.+-...+-|.-++..|+.+|..|..++.+++.
T Consensus         6 ElleqLE~KIq~avdtI~lLqmEieELKekN~~L~~e~~e~~~   48 (81)
T 2jee_A            6 EVFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQH   48 (81)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3577888888888887777777777787778777777777444

>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}

Probab=94.94  E-value=0.093  Score=41.07  Aligned_cols=39  Identities=28%  Similarity=0.256  Sum_probs=36.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471          348 SELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFL  386 (424)
Q Consensus       348 eELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK  386 (424)
                      ..=|.||++|..-|..|+.++..+|+..+.|..||..|+
T Consensus        23 aaSeAkiQQLmkVN~~ls~Elr~mQ~~lq~LQsen~~Lr   61 (63)
T 2w6a_A           23 ATSEAKVQQLMKVNSSLSDELRKLQREIHKLQAENLQLR   61 (63)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhhHHHHHHHHHHhHhhhHHHHHHHHHHHHHHhhhhhhc
Confidence            345889999999999999999999999999999999887

>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}

Probab=93.89  E-value=0.3  Score=42.97  Aligned_cols=55  Identities=11%  Similarity=0.099  Sum_probs=45.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471          341 ERKMRYISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLPFLIR  395 (424)
Q Consensus       341 eRKK~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqaLEQq  395 (424)
                      .+.++.++.|+.+++.+..|...|+.++..++.++..+..++.+|+.++..++.+
T Consensus        71 ~k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~  125 (138)
T 3hnw_A           71 FKAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKN  125 (138)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444557889999999999999999999999999999999999998888877654

>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}

Probab=93.67  E-value=0.15  Score=41.04  Aligned_cols=51  Identities=20%  Similarity=0.075  Sum_probs=42.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471          345 RYISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLPFLIR  395 (424)
Q Consensus       345 ~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqaLEQq  395 (424)
                      ..|.+||.|+..++.-..+|...|..-+++...|..+...|..|+..++..
T Consensus        14 ~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~~~~~   64 (78)
T 3efg_A           14 ARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVRST   64 (78)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence            468999999999999999999999999999999999999999999887753

>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}

Probab=92.37  E-value=2  Score=38.85  Aligned_cols=56  Identities=7%  Similarity=0.022  Sum_probs=38.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471          349 ELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLPFLIRAILIVHLFVFL  406 (424)
Q Consensus       349 ELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqaLEQqaqLrd~L~eal  406 (424)
                      +-..-++.|+.|...|..++..++.....|..||++|-.|.  |.+..+=.++++++.
T Consensus        93 eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV~RW--M~rk~qEAe~MN~an  148 (152)
T 3a7p_A           93 LKNKNTERLNAALISGTIENNVLQQKLSDLKKEHSQLVARW--LKKTEKETEAMNSEI  148 (152)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHC----
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhc
Confidence            33455788888999999999999999999999999998776  222233335555543

>2oa5_A Hypothetical protein BQLF2; MHR28B, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: PE5; 2.10A {Murid herpesvirus 4} SCOP: d.362.1.1 PDB: 2h3r_A*

Probab=92.27  E-value=0.2  Score=43.14  Aligned_cols=24  Identities=29%  Similarity=0.400  Sum_probs=21.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Q 014471          346 YISELEQKVQTLQTEATTLSAQVT  369 (424)
Q Consensus       346 YieELE~KVq~Lq~EN~~Ls~Ql~  369 (424)
                      -++||+.+++.|+.||..|+.++.
T Consensus         9 t~EeLaaeL~kLqmENK~LKkkl~   32 (110)
T 2oa5_A            9 TYEEMVKEVERLKLENKTLKQKVK   32 (110)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHTC-
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHh
Confidence            368999999999999999999985

>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}

Probab=92.25  E-value=4  Score=37.37  Aligned_cols=78  Identities=15%  Similarity=0.054  Sum_probs=45.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHH
Q 014471          331 ANRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLPFLIRAILIV----HLFVFL  406 (424)
Q Consensus       331 kNRESAqRSReRKK~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqaLEQqaqLrd----~L~eal  406 (424)
                      +-=+.=++.|.+-.+.+.||+.+|..|+.|...++..+..+       ..+|+.|..+|..+|...--.+    .=-+++
T Consensus        76 a~L~qEr~~r~q~se~~~elq~ri~~L~~El~~~k~~~~k~-------~~e~r~L~Ekl~~lEKe~a~~eid~~~eLKal  148 (168)
T 3o0z_A           76 AILEAERRDRGHDSEMIGDLQARITSLQEEVKHLKHNLEKV-------EGERKEAQDMLNHSEKEKNNLEIDLNYKLKSL  148 (168)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence            33344455666677777778888877777777766665554       4455555555555555433322    112466


Q ss_pred             HHHHHHHHH
Q 014471          407 TLFFFREIL  415 (424)
Q Consensus       407 ta~f~rEI~  415 (424)
                      +.-.++|+.
T Consensus       149 Q~~~eqE~~  157 (168)
T 3o0z_A          149 QQRLEQEVN  157 (168)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            666666654

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=92.24  E-value=2.7  Score=47.42  Aligned_cols=53  Identities=15%  Similarity=0.037  Sum_probs=26.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Q 014471          341 ERKMRYISELEQKVQTLQTEATTLSAQVTI----LQVSIAELILPIAEFLIVLLPFL  393 (424)
Q Consensus       341 eRKK~YieELE~KVq~Lq~EN~~Ls~Ql~~----Lqren~~L~~EN~ELK~RLqaLE  393 (424)
                      ....+-+++|+.+++.+..|...|.+++..    |+.....|..||..|++++..|+
T Consensus       987 ~~L~~e~~~l~~~~~~~~ke~~~lee~~~~~~~~L~~kv~~L~~e~~~L~qq~~~l~ 1043 (1080)
T 2dfs_A          987 LSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELN 1043 (1080)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333444444444444444444444444332    33444456666666666666665

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=91.77  E-value=2.3  Score=42.93  Aligned_cols=37  Identities=11%  Similarity=-0.094  Sum_probs=15.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471          355 QTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLP  391 (424)
Q Consensus       355 q~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqa  391 (424)
                      +.++.++..+.+++...+++...+..|..+|+.+++.
T Consensus       519 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~  555 (597)
T 3oja_B          519 AFKLRETQARRTEADAKQKETEDLEQENIALEKQLDN  555 (597)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHhhhhhhcchhhHHhhhHHHHHHHhh
Confidence            3333333333333433334444444444444444433

>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}

Probab=91.72  E-value=0.63  Score=34.26  Aligned_cols=44  Identities=27%  Similarity=0.262  Sum_probs=28.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471          346 YISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVL  389 (424)
Q Consensus       346 YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RL  389 (424)
                      .+..||..|..|+.||.+|+.+.-.-..-..-|+.|...|+.++
T Consensus         4 lvaqlenevaslenenetlkkknlhkkdliaylekeianlrkki   47 (49)
T 3he5_A            4 LVAQLENEVASLENENETLKKKNLHKKDLIAYLEKEIANLRKKI   47 (49)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhcccHHHHHhcccHHHHHHHHHHHHHHHHHHh
Confidence            35678888888888888887765444444455555555555544

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=91.40  E-value=4.2  Score=41.04  Aligned_cols=47  Identities=4%  Similarity=-0.050  Sum_probs=27.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471          348 SELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLPFLI  394 (424)
Q Consensus       348 eELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqaLEQ  394 (424)
                      +.|++.++.++.+...+..++..++++...++.+.++|+.++..||+
T Consensus       505 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~  551 (597)
T 3oja_B          505 DNLNKVFTHLKERQAFKLRETQARRTEADAKQKETEDLEQENIALEK  551 (597)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhhhHHHHHHHHHhhhhhhcchhhHHhhhHHHHH
Confidence            45555555555555556556666666655555565656666666654

>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1

Probab=90.97  E-value=1.2  Score=33.84  Aligned_cols=43  Identities=19%  Similarity=0.227  Sum_probs=36.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471          347 ISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVL  389 (424)
Q Consensus       347 ieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RL  389 (424)
                      .+.|-++|..|..||+.|++++..-..+...|+.|-..+|.-+
T Consensus         5 YdQL~~QVe~Lk~ENshLrrEL~dNS~~lskLE~ets~mKevl   47 (54)
T 1deb_A            5 YDQLLKQVEALKMENSNLRQELEDNSNHLTKLETEASNMKEVL   47 (54)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHhhhhhHHHHH
Confidence            3678899999999999999999888888888888877777554

>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}

Probab=90.03  E-value=2.4  Score=37.21  Aligned_cols=54  Identities=13%  Similarity=0.118  Sum_probs=36.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471          341 ERKMRYISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLPFLI  394 (424)
Q Consensus       341 eRKK~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqaLEQ  394 (424)
                      +.=.+.+++++.++..|..+...+..++..+.+++..|..++++|..++..+|.
T Consensus        78 ~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~  131 (138)
T 3hnw_A           78 DSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLET  131 (138)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333455566677777777777777777777777777777777777777766653

>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}

Probab=89.91  E-value=1.6  Score=35.75  Aligned_cols=56  Identities=20%  Similarity=0.099  Sum_probs=32.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471          347 ISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLPFLIRAILIVHLFVFLTL  408 (424)
Q Consensus       347 ieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqaLEQqaqLrd~L~ealta  408 (424)
                      |.-|.-+|..|+.+|.+|..++..++.....|..||..|+...      ..|.+.|...+..
T Consensus        22 I~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~------~~wq~Rl~~LLgk   77 (81)
T 2jee_A           22 ITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQ------NGWQERLQALLGR   77 (81)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH------HHHHHHHHHHHHh
Confidence            3445555555666666666666665555566777777776555      4455555544443

>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}

Probab=89.84  E-value=1.6  Score=32.35  Aligned_cols=44  Identities=20%  Similarity=0.190  Sum_probs=30.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471          349 ELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLPFLIR  395 (424)
Q Consensus       349 ELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqaLEQq  395 (424)
                      +||.+|..|+.-...|..+++.|..++..   -...||+||..||.+
T Consensus         2 dlEekv~~Le~~ld~LqTr~ArLlae~~s---sq~KlKqRit~lE~~   45 (46)
T 3swy_A            2 ALEEKVEQLGSSLDTLQTRFARLLAEYNA---TQMKMKQRLSQLESQ   45 (46)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhc
Confidence            57777777777666666666666555443   345688999888865

>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}

Probab=89.65  E-value=1.2  Score=36.58  Aligned_cols=44  Identities=16%  Similarity=0.187  Sum_probs=32.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471          344 MRYISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLPFLIRAIL  398 (424)
Q Consensus       344 K~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqaLEQqaqL  398 (424)
                      ..||..|...++.+..+           +.+...|...|..|..|+|.||.||++
T Consensus        38 vdYI~~Lq~e~~r~~e~-----------e~r~k~le~~n~~l~~riqELE~qa~~   81 (83)
T 4ath_A           38 VDYIRKLQREQQRAKDL-----------ENRQKKLEHANRHLLLRVQELEMQARA   81 (83)
T ss_dssp             HHHHHHHHHTHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHH-----------HHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence            67887776665544433           344556888999999999999999865

>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A

Probab=89.13  E-value=2.2  Score=39.81  Aligned_cols=45  Identities=20%  Similarity=0.183  Sum_probs=27.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471          345 RYISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVL  389 (424)
Q Consensus       345 ~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RL  389 (424)
                      +.++.=+.-|+.|+.||..|..|+...+.++..|..+...|+.++
T Consensus        13 ~ql~~ad~LV~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~   57 (190)
T 4emc_A           13 QQIDSADLLVANLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQV   57 (190)
T ss_dssp             -------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            344455566888888888888888876666666666655555554

>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*

Probab=88.96  E-value=0.5  Score=33.14  Aligned_cols=27  Identities=30%  Similarity=0.262  Sum_probs=22.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471          346 YISELEQKVQTLQTEATTLSAQVTILQ  372 (424)
Q Consensus       346 YieELE~KVq~Lq~EN~~Ls~Ql~~Lq  372 (424)
                      .+..||.||..|-.+|..|..++..|+
T Consensus         2 RMnQLE~kVEeLl~~n~~Le~eV~rLk   28 (34)
T 2oxj_A            2 RMXQLEXKVXELLXKNXHLEXEVXRLK   28 (34)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence            467899999999888888888777665

>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}

Probab=88.94  E-value=5.4  Score=31.96  Aligned_cols=45  Identities=13%  Similarity=0.146  Sum_probs=34.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471          348 SELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLPF  392 (424)
Q Consensus       348 eELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqaL  392 (424)
                      .++..|++.++.+|..|..+|..|+.+...-..+-..++..|+.+
T Consensus         3 ~~~~~kLq~~E~~N~~Le~~v~~le~~Le~s~~~q~~~~~Elk~~   47 (72)
T 3cve_A            3 HNSHMKLQEVEIRNKDLEGQLSEMEQRLEKSQSEQDAFRSNLKTL   47 (72)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            367788888888999999888888888877766666666666544

>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A

Probab=88.82  E-value=3.7  Score=34.98  Aligned_cols=42  Identities=21%  Similarity=0.271  Sum_probs=28.2

Q ss_pred             HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH
Q 014471          348 SELEQKVQTLQTEATTLSA-------QVTILQVSIAELILPIAEFLIVL  389 (424)
Q Consensus       348 eELE~KVq~Lq~EN~~Ls~-------Ql~~Lqren~~L~~EN~ELK~RL  389 (424)
                      -+||.++..|+.||..|..       ++..|+.+...|..||..|+..-
T Consensus        40 l~LE~~~s~le~e~~rlr~~~~~~~~~v~eLe~everL~~ENq~L~~e~   88 (104)
T 3s9g_A           40 LELEKSLSRMEDENNRLRLESKRLDARVRELELELDRLRAENLQLLTEN   88 (104)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            4688888888888887776       55555555666666666555444

>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}

Probab=88.80  E-value=1.3  Score=32.32  Aligned_cols=35  Identities=11%  Similarity=0.120  Sum_probs=18.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471          354 VQTLQTEATTLSAQVTILQVSIAELILPIAEFLIV  388 (424)
Q Consensus       354 Vq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~R  388 (424)
                      |..|+.....|..++..|++....|..||.-|++-
T Consensus         5 l~eLE~r~k~le~~naeLEervstLq~EN~mLRqv   39 (42)
T 2oqq_A            5 LSELENRVKDLENKNSELEERLSTLQNENQMLRHI   39 (42)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence            44555555555555555555555555555555443

>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A

Probab=88.73  E-value=9.2  Score=31.63  Aligned_cols=52  Identities=13%  Similarity=0.115  Sum_probs=33.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471          339 SKERKMRYISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLL  390 (424)
Q Consensus       339 SReRKK~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLq  390 (424)
                      -++.-....+.+|.+++.++.++..+..+|..|++.+..|..+...+..+|.
T Consensus        17 e~e~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~   68 (101)
T 3u1c_A           17 DKENALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELH   68 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444555566677777777777777777777777777666666666655554

>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A

Probab=88.65  E-value=0.46  Score=33.14  Aligned_cols=26  Identities=31%  Similarity=0.455  Sum_probs=21.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471          347 ISELEQKVQTLQTEATTLSAQVTILQ  372 (424)
Q Consensus       347 ieELE~KVq~Lq~EN~~Ls~Ql~~Lq  372 (424)
                      +..||.||..|-.+|+.|..++.-|+
T Consensus         2 M~QLE~kVEeLl~~n~~Le~EV~RLk   27 (33)
T 3m48_A            2 MAQLEAKVEELLSKNWNLENEVARLK   27 (33)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHhHHHHHHHHHHH
Confidence            56899999999999999988887765

>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1

Probab=88.30  E-value=0.83  Score=38.69  Aligned_cols=27  Identities=26%  Similarity=0.359  Sum_probs=15.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471          346 YISELEQKVQTLQTEATTLSAQVTILQ  372 (424)
Q Consensus       346 YieELE~KVq~Lq~EN~~Ls~Ql~~Lq  372 (424)
                      -+..|..+|..|+.||..|..++..|+
T Consensus        13 ~~~~lr~ei~~Le~E~~rLr~~~~~LE   39 (100)
T 1go4_E           13 EADTLRLKVEELEGERSRLEEEKRMLE   39 (100)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345566666666666666666655554

>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}

Probab=87.86  E-value=3.2  Score=33.76  Aligned_cols=45  Identities=24%  Similarity=0.170  Sum_probs=31.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471          348 SELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLPF  392 (424)
Q Consensus       348 eELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqaL  392 (424)
                      +++..|++.++.+|..|..+|..|+.+...-..+-..++..|+.+
T Consensus         9 e~~~~klq~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l   53 (79)
T 3cvf_A            9 EETQQKVQDLETRNAELEHQLRAMERSLEEARAERERARAEVGRA   53 (79)
T ss_dssp             -CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456677788888888888888887777766666666666555543

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=87.66  E-value=4.3  Score=45.76  Aligned_cols=37  Identities=16%  Similarity=0.134  Sum_probs=17.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471          350 LEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFL  386 (424)
Q Consensus       350 LE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK  386 (424)
                      ++.+|..|+.|..+|..++..+.++...|+.++.+++
T Consensus       982 ~~~~v~~L~~e~~~l~~~~~~~~ke~~~lee~~~~~~ 1018 (1080)
T 2dfs_A          982 ATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYK 1018 (1080)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444444444454444444444444444444444

>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A

Probab=87.18  E-value=0.27  Score=42.08  Aligned_cols=25  Identities=12%  Similarity=0.054  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471          374 SIAELILPIAEFLIVLLPFLIRAIL  398 (424)
Q Consensus       374 en~~L~~EN~ELK~RLqaLEQqaqL  398 (424)
                      +...|..+|..|..||+.||.|+++
T Consensus        92 ~~~~l~~~n~~L~~riqeLE~~a~~  116 (118)
T 4ati_A           92 RQKKLEHANRHLLLRVQELEMQARA  116 (118)
T ss_dssp             -------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4556888999999999999998865

>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B

Probab=87.06  E-value=1  Score=31.91  Aligned_cols=28  Identities=25%  Similarity=0.357  Sum_probs=23.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471          346 YISELEQKVQTLQTEATTLSAQVTILQV  373 (424)
Q Consensus       346 YieELE~KVq~Lq~EN~~Ls~Ql~~Lqr  373 (424)
                      .+..||.||..|-.+++.|..++..|+.
T Consensus         2 RMnQLE~KVEeLl~~~~~Le~eV~RLk~   29 (36)
T 1kd8_B            2 KVKQLKAKVEELKSKLWHLKNKVARLKK   29 (36)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            4678999999999999888888877654

>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1

Probab=86.94  E-value=0.79  Score=32.12  Aligned_cols=28  Identities=7%  Similarity=0.157  Sum_probs=22.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471          346 YISELEQKVQTLQTEATTLSAQVTILQV  373 (424)
Q Consensus       346 YieELE~KVq~Lq~EN~~Ls~Ql~~Lqr  373 (424)
                      .+..||.||..|-.+|..|..++..|+.
T Consensus         2 RMnQLEdKVEeLl~~~~~Le~EV~RLk~   29 (34)
T 3c3f_A            2 RMXQIEXKLEXILSXLYHXENEXARIXK   29 (34)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence            4678999999999999888888876653

>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}

Probab=86.51  E-value=2.3  Score=34.40  Aligned_cols=46  Identities=13%  Similarity=0.073  Sum_probs=31.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471          348 SELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLPFLIRA  396 (424)
Q Consensus       348 eELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqaLEQqa  396 (424)
                      ++||.||..|+.-...|..+++.|..++..   -...||+||..||.+.
T Consensus         3 ~dlEEKv~~LE~sld~LQTrfARLLaEy~s---sQ~KLKqRit~LE~~~   48 (74)
T 3swf_A            3 MGLEEKVTRMESSVDLLQTRFARILAEYES---MQQKLKQRLTKVEKFL   48 (74)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHh
Confidence            467788887777766666666666555543   3456899998888763

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}

Probab=86.49  E-value=18  Score=33.71  Aligned_cols=26  Identities=12%  Similarity=-0.060  Sum_probs=10.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471          341 ERKMRYISELEQKVQTLQTEATTLSA  366 (424)
Q Consensus       341 eRKK~YieELE~KVq~Lq~EN~~Ls~  366 (424)
                      ...+..+.+++.++..++.+...+..
T Consensus        49 ~~~~~~l~d~~~~~~~~e~~i~~~~~   74 (256)
T 3na7_A           49 LNLEEEKLALKLQVSKNEQTLQDTNA   74 (256)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33334444444444444444433333

>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A

Probab=86.46  E-value=7.5  Score=31.94  Aligned_cols=41  Identities=17%  Similarity=0.057  Sum_probs=21.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHH
Q 014471          353 KVQTLQTEATTLSAQVTILQVSIA-----ELILPIAEFLIVLLPFL  393 (424)
Q Consensus       353 KVq~Lq~EN~~Ls~Ql~~Lqren~-----~L~~EN~ELK~RLqaLE  393 (424)
                      ||..|+.+|..|..++..++....     ....+..+|+.+|..+.
T Consensus        24 KVR~LEqqN~~Le~~i~~l~~~~~~~~~~~ye~~i~~Lr~~i~~~~   69 (93)
T 3s4r_A           24 KVRFLEQQNKILLAELEQLKGQGKSRLGDLYEEEMRELRRQVDQLT   69 (93)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHHHHHHH
Confidence            466666666666666655554321     23445555555554443

>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}

Probab=86.31  E-value=11  Score=32.42  Aligned_cols=33  Identities=18%  Similarity=0.133  Sum_probs=13.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471          350 LEQKVQTLQTEATTLSAQVTILQVSIAELILPI  382 (424)
Q Consensus       350 LE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN  382 (424)
                      |+..+..|..++..|...|-.|+..|+.|....
T Consensus        40 Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~   72 (111)
T 2v66_B           40 LEDDLSQTRAIKEQLHKYVRELEQANDDLERAK   72 (111)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHH
Confidence            333444444444444444444444444333333

>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A

Probab=86.02  E-value=0.89  Score=32.24  Aligned_cols=29  Identities=24%  Similarity=0.382  Sum_probs=23.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471          346 YISELEQKVQTLQTEATTLSAQVTILQVS  374 (424)
Q Consensus       346 YieELE~KVq~Lq~EN~~Ls~Ql~~Lqre  374 (424)
                      .+..||.||..|..+++.|..++..|+.-
T Consensus         2 RMnQLE~kVEeLl~~~~~Le~EV~RL~~l   30 (36)
T 1kd8_A            2 EVKQLEAEVEEIESEVWHLENEVARLEKE   30 (36)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            35689999999999998888888776643

>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B

Probab=85.83  E-value=0.92  Score=35.95  Aligned_cols=25  Identities=28%  Similarity=0.337  Sum_probs=13.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471          344 MRYISELEQKVQTLQTEATTLSAQV  368 (424)
Q Consensus       344 K~YieELE~KVq~Lq~EN~~Ls~Ql  368 (424)
                      ..||..|+.+++.|+.|...|..++
T Consensus        46 i~YI~~L~~~~~~l~~e~~~L~~~~   70 (83)
T 1nkp_B           46 TEYIQYMRRKNHTHQQDIDDLKRQN   70 (83)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4566666666665554444444433

>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A

Probab=85.64  E-value=3.8  Score=35.77  Aligned_cols=38  Identities=21%  Similarity=0.209  Sum_probs=21.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471          353 KVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLL  390 (424)
Q Consensus       353 KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLq  390 (424)
                      +|+.|+.|+.+|..+|.....+...|..+|..|..||.
T Consensus        72 ~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~~~~r~~  109 (121)
T 3mq7_A           72 KVEELEGEITTLNHKLQDASAEVERLRRENQVLSVRIA  109 (121)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhHhh
Confidence            35555555555555555555556666666666665553

>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*

Probab=85.60  E-value=1.4  Score=30.79  Aligned_cols=26  Identities=8%  Similarity=0.270  Sum_probs=21.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471          347 ISELEQKVQTLQTEATTLSAQVTILQ  372 (424)
Q Consensus       347 ieELE~KVq~Lq~EN~~Ls~Ql~~Lq  372 (424)
                      +..||.||..|-.+|..|..++..|+
T Consensus         2 MnQLEdKvEeLl~~~~~Le~EV~RLk   27 (33)
T 3c3g_A            2 MKXIEXKLXEIXSKXYHXENXLARIK   27 (33)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHhhHHHHHHHHHH
Confidence            56899999999999888888877665

>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}

Probab=85.06  E-value=8.8  Score=39.92  Aligned_cols=19  Identities=16%  Similarity=-0.120  Sum_probs=10.7

Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q 014471          376 AELILPIAEFLIVLLPFLI  394 (424)
Q Consensus       376 ~~L~~EN~ELK~RLqaLEQ  394 (424)
                      ..|..|-++|+.+|..+++
T Consensus       119 ~~l~~~~~~l~~~i~~l~~  137 (501)
T 1wle_A          119 QSLRARGREIRKQLTLLYP  137 (501)
T ss_dssp             HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            3555555666666655553

>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*

Probab=84.51  E-value=5.1  Score=33.01  Aligned_cols=30  Identities=17%  Similarity=0.107  Sum_probs=26.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471          358 QTEATTLSAQVTILQVSIAELILPIAEFLI  387 (424)
Q Consensus       358 q~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~  387 (424)
                      -.||.+|..++..++.+...|..||.+|+.
T Consensus        37 L~EN~~Lh~~ie~~~eEi~~Lk~en~~L~e   66 (83)
T 1wlq_A           37 LKENEKLHKEIEQKDSEIARLRKENKDLAE   66 (83)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            348899999999999999999999998864

>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...

Probab=84.49  E-value=1.1  Score=31.38  Aligned_cols=27  Identities=7%  Similarity=0.357  Sum_probs=21.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471          346 YISELEQKVQTLQTEATTLSAQVTILQ  372 (424)
Q Consensus       346 YieELE~KVq~Lq~EN~~Ls~Ql~~Lq  372 (424)
                      .+..||.||..|-.+|..|..++..|+
T Consensus         2 RMnQLEdKvEeLl~~~~~L~~EV~RLk   28 (34)
T 2bni_A            2 RMKQIEDKLEEILSKGHHICNELARIK   28 (34)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHccHHHHHHHHHHH
Confidence            467899999999999988888877665

>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}

Probab=84.32  E-value=2.3  Score=34.65  Aligned_cols=51  Identities=16%  Similarity=-0.031  Sum_probs=23.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Q 014471          356 TLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLP-FLIRAILIVHLFVFL  406 (424)
Q Consensus       356 ~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqa-LEQqaqLrd~L~eal  406 (424)
                      .|+.++.++..++..++.+|..|......|+.+|+. -.++.+++..|..++
T Consensus         3 ~l~~e~e~~~~klq~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~   54 (79)
T 3cvf_A            3 HMAAEREETQQKVQDLETRNAELEHQLRAMERSLEEARAERERARAEVGRAA   54 (79)
T ss_dssp             -------CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345556666666666666666655555555555543 233444444444433

>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A

Probab=84.31  E-value=2  Score=35.75  Aligned_cols=33  Identities=12%  Similarity=0.109  Sum_probs=18.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471          362 TTLSAQVTILQVSIAELILPIAEFLIVLLPFLI  394 (424)
Q Consensus       362 ~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqaLEQ  394 (424)
                      ..|..++..|+.+...|..||.+++..+..+.+
T Consensus        51 ~~LE~e~~~L~~e~~~L~~e~~~~~~e~d~~k~   83 (90)
T 2wt7_B           51 HHLENEKTQLIQQVEQLKQEVSRLARERDAYKV   83 (90)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445555555556666666666666655544433

>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A

Probab=84.08  E-value=2.9  Score=31.45  Aligned_cols=37  Identities=14%  Similarity=0.184  Sum_probs=14.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471          353 KVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVL  389 (424)
Q Consensus       353 KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RL  389 (424)
                      ++..|+.++..|.+++..|.........|...|+.+|
T Consensus        10 r~~~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeel   46 (51)
T 3m91_A           10 DIHQLEARIDSLAARNSKLMETLKEARQQLLALREEV   46 (51)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333444444444433333333333333444444444

>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1

Probab=84.06  E-value=3  Score=31.40  Aligned_cols=26  Identities=12%  Similarity=-0.004  Sum_probs=12.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471          368 VTILQVSIAELILPIAEFLIVLLPFL  393 (424)
Q Consensus       368 l~~Lqren~~L~~EN~ELK~RLqaLE  393 (424)
                      +..|+.+...|..+|.+|+.+++.|.
T Consensus        24 ~~~Le~~~~~L~~~n~~L~~~i~~L~   49 (61)
T 1t2k_D           24 VQSLEKKAEDLSSLNGQLQSEVTLLR   49 (61)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444445555555555554443

>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}

Probab=83.94  E-value=16  Score=33.97  Aligned_cols=29  Identities=10%  Similarity=0.053  Sum_probs=19.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471          367 QVTILQVSIAELILPIAEFLIVLLPFLIR  395 (424)
Q Consensus       367 Ql~~Lqren~~L~~EN~ELK~RLqaLEQq  395 (424)
                      ++..|+.++..|...+..|+.+|-.|||.
T Consensus        89 ~~~~Lq~el~~l~~~~~~l~~~ireLEq~  117 (189)
T 2v71_A           89 QVSVLEDDLSQTRAIKEQLHKYVRELEQA  117 (189)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            36666666677777777777777666653

>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*

Probab=83.81  E-value=3.7  Score=43.57  Aligned_cols=53  Identities=9%  Similarity=0.244  Sum_probs=40.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471          337 ARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVL  389 (424)
Q Consensus       337 qRSReRKK~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RL  389 (424)
                      ......+.+|-+|||++++.|+.+...-..+|..||..+..+..+.+.|..-|
T Consensus       102 ~dNdNtynE~S~ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQRLEvDI  154 (562)
T 3ghg_A          102 NNRDNTYNRVSEDLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDI  154 (562)
T ss_dssp             HHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35566788888899999999998887766888888887777777666665444

>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...

Probab=83.77  E-value=1.8  Score=30.14  Aligned_cols=27  Identities=11%  Similarity=0.174  Sum_probs=22.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471          347 ISELEQKVQTLQTEATTLSAQVTILQV  373 (424)
Q Consensus       347 ieELE~KVq~Lq~EN~~Ls~Ql~~Lqr  373 (424)
                      +..||.||..|-.++..|..++..|+.
T Consensus         2 MnQLEdKVEell~~~~~le~EV~Rl~~   28 (33)
T 2wq1_A            2 MKQLEDKIEENTSKIYHNTNEIARNTK   28 (33)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            568999999999999888888876653

>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A

Probab=83.65  E-value=1.3  Score=31.07  Aligned_cols=28  Identities=21%  Similarity=0.280  Sum_probs=22.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471          346 YISELEQKVQTLQTEATTLSAQVTILQV  373 (424)
Q Consensus       346 YieELE~KVq~Lq~EN~~Ls~Ql~~Lqr  373 (424)
                      .+..||.||..|-.+|..|..++..|+.
T Consensus         2 RMnQLEdkVEeLl~~~~~Le~eV~RL~~   29 (34)
T 2hy6_A            2 KVKQLADAVEELASANYHLANAVARLAK   29 (34)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            3568999999999999888888877653

>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1

Probab=83.53  E-value=2  Score=34.42  Aligned_cols=32  Identities=16%  Similarity=0.100  Sum_probs=20.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471          343 KMRYISELEQKVQTLQTEATTLSAQVTILQVS  374 (424)
Q Consensus       343 KK~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqre  374 (424)
                      -..||..|+.+.+.|+.|...|..++..|+.+
T Consensus        45 A~~yI~~L~~~~~~l~~e~~~L~~e~~~L~~~   76 (80)
T 1nlw_A           45 AKLHIKKLEDSDRKAVHQIDQLQREQRHLKRQ   76 (80)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35788888887777777666665555444433

>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}

Probab=83.50  E-value=2.1  Score=32.19  Aligned_cols=28  Identities=7%  Similarity=0.078  Sum_probs=14.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471          362 TTLSAQVTILQVSIAELILPIAEFLIVL  389 (424)
Q Consensus       362 ~~Ls~Ql~~Lqren~~L~~EN~ELK~RL  389 (424)
                      ..|+.++..|+.++..|..++.+|+.+|
T Consensus        22 eaLk~E~~eLk~k~~~L~~~~~el~~~l   49 (53)
T 2yy0_A           22 ELLRLELAEMKEKYEAIVEENKKLKAKL   49 (53)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444444445555556666666555

>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*

Probab=83.05  E-value=1.4  Score=30.90  Aligned_cols=27  Identities=7%  Similarity=0.255  Sum_probs=21.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471          346 YISELEQKVQTLQTEATTLSAQVTILQ  372 (424)
Q Consensus       346 YieELE~KVq~Lq~EN~~Ls~Ql~~Lq  372 (424)
                      .+..||.||..|-.+|..|..++..|+
T Consensus         2 RM~QLEdKVEeLl~~n~~Le~EV~RLk   28 (34)
T 1uo4_A            2 RMKQIEDKGEEILSKLYHIENELARIK   28 (34)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            356899999999988888888877664

>2kz5_A Transcription factor NF-E2 45 kDa subunit; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens}

Probab=82.91  E-value=0.089  Score=44.01  Aligned_cols=47  Identities=19%  Similarity=0.244  Sum_probs=37.0

Q ss_pred             CCCHHHHhhhhchhHHHHhhhcChHHHHHHHHHHHHHHHHHHHHHHH
Q 014471          300 EFNDAELKKIWANEKLAEIALSDPKRAKRILANRQSAARSKERKMRY  346 (424)
Q Consensus       300 e~s~~e~KKi~~~~~LaElAl~DpKR~RRiLkNRESAqRSReRKK~Y  346 (424)
                      .++-+|.+..+....|.+--+..-+.+||-.+||.+||+.|+||...
T Consensus        42 ~lpv~efn~ll~~~~Ls~~Ql~lIrdiRRRgKNKvAAqnCRKRKld~   88 (91)
T 2kz5_A           42 NLPVDDFNELLARYPLTESQLALVRDIRRRGKNKVAAQNYRKRKLET   88 (91)
T ss_dssp             HSCHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHTTSCCCCCCCC
T ss_pred             HCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence            34556777777777776666667889999999999999999999753

>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*

Probab=82.79  E-value=18  Score=33.66  Aligned_cols=36  Identities=19%  Similarity=0.112  Sum_probs=16.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471          349 ELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAE  384 (424)
Q Consensus       349 ELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~E  384 (424)
                      +|+.++..|+.+|..|...+..|..++..+..+..+
T Consensus       136 ~~~~~~~~L~~e~~~l~~~~~~l~~qlE~~v~~K~~  171 (213)
T 1ik9_A          136 ENQAKNEHLQKENERLLRDWNDVQGRFEKAVSAKEA  171 (213)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444444444444444444444444444444443333

>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1

Probab=82.55  E-value=1.9  Score=30.61  Aligned_cols=28  Identities=21%  Similarity=0.165  Sum_probs=25.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471          359 TEATTLSAQVTILQVSIAELILPIAEFL  386 (424)
Q Consensus       359 ~EN~~Ls~Ql~~Lqren~~L~~EN~ELK  386 (424)
                      .||.+|...++.-+.+...|..||.+|+
T Consensus         7 ~ENekLhk~ie~KdeeIa~Lk~eN~eL~   34 (37)
T 1t6f_A            7 KENEKLHKEIEQKDNEIARLKKENKELA   34 (37)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence            5899999999999999999999999986

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*

Probab=82.55  E-value=21  Score=45.03  Aligned_cols=36  Identities=14%  Similarity=0.063  Sum_probs=16.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471          360 EATTLSAQVTILQVSIAELILPIAEFLIVLLPFLIR  395 (424)
Q Consensus       360 EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqaLEQq  395 (424)
                      +..+|.++++.|+.++..+..|..+|+.+++..++.
T Consensus      2036 ~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~k 2071 (3245)
T 3vkg_A         2036 TITALEKSIATYKEEYATLIRETEQIKTESSKVKNK 2071 (3245)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333344444444444455555555555554444433

>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}

Probab=82.46  E-value=19  Score=29.51  Aligned_cols=53  Identities=11%  Similarity=0.088  Sum_probs=34.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471          339 SKERKMRYISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLP  391 (424)
Q Consensus       339 SReRKK~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqa  391 (424)
                      -++.-....+.||.+++.+..++..+..++..|++.+..|..+...+..+|..
T Consensus        17 e~e~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~   69 (101)
T 3u59_A           17 DKENAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKE   69 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44445555666777777777777777777777777776666666666555543

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=82.17  E-value=22  Score=35.22  Aligned_cols=40  Identities=10%  Similarity=-0.149  Sum_probs=21.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471          354 VQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLPFL  393 (424)
Q Consensus       354 Vq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqaLE  393 (424)
                      .+.+|.|-..+.+.....+++...|..||..|+..++.+.
T Consensus       423 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  462 (487)
T 3oja_A          423 YVEQQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGEAD  462 (487)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhcchhhhhhhhhHHHHHHHHhhhhhhhhhhhh
Confidence            3334444444455555556666666666666666665544

>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}

Probab=82.06  E-value=5.6  Score=29.79  Aligned_cols=38  Identities=18%  Similarity=0.227  Sum_probs=31.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471          351 EQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIV  388 (424)
Q Consensus       351 E~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~R  388 (424)
                      |.++..|..-|..|..+++.|+..+..++.|+..|+.=
T Consensus         3 eq~l~kLKe~n~~L~~kv~~Le~~c~~~eQEieRL~~L   40 (48)
T 3vmx_A            3 ERQILRLKQINIQLATKIQHLEFSCSEKEQEIERLNKL   40 (48)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHH
Confidence            67788888888889999999999998888888777643

>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*

Probab=82.02  E-value=2.6  Score=40.10  Aligned_cols=67  Identities=15%  Similarity=0.146  Sum_probs=32.6

Q ss_pred             HHhhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471          316 AEIALSDPKRAKRILANRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVL  389 (424)
Q Consensus       316 aElAl~DpKR~RRiLkNRESAqRSReRKK~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RL  389 (424)
                      ..|-.-++||.+|+|+-=.-=.+-|+-|..-++++       ..+...+..++..++.++..++.+..+|+.++
T Consensus       112 ~DL~kP~~~Rt~~iLSalINF~~FRE~~~~~~~e~-------~~~~e~~~~~i~ql~~En~~le~~Ie~Lk~e~  178 (250)
T 2ve7_C          112 ADILCPKAKRTSRFLSGIINFIHFREACRETYMEF-------LWQYKSSADKMQQLNAAHQEALMKLERLEKEV  178 (250)
T ss_dssp             HHHHSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHTTHHHHHHHHHHHHHHHHHHSCC------
T ss_pred             hHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35556789999999776555555555444433332       33333444444444444444444444444443

>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}

Probab=80.17  E-value=24  Score=30.43  Aligned_cols=60  Identities=18%  Similarity=0.177  Sum_probs=35.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH
Q 014471          333 RQSAARSKERKMRYISELEQKVQTLQT---EATTLSAQVTILQVSIAE-------LILPIAEFLIVLLPF  392 (424)
Q Consensus       333 RESAqRSReRKK~YieELE~KVq~Lq~---EN~~Ls~Ql~~Lqren~~-------L~~EN~ELK~RLqaL  392 (424)
                      =.+|...=..|+.-|++|..++..+..   +..-|.+|+.....++..       +..|+.+|..+|..|
T Consensus        33 L~~AEeaL~~Kq~~idelk~ei~q~~~~lE~I~vLkaQv~IY~~DF~aERadREkl~~eKe~L~~ql~~L  102 (110)
T 2v4h_A           33 LQQAEEALVAKQELIDKLKEEAEQHKIVMETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQL  102 (110)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHhHHHHHHHHHHHH
Confidence            345555555677777777777777666   455566676666655543       444444444444433

>2fic_A Bridging integrator 1; BAR domain, homodimer, coiled-coils, endocytosis/exocytosis, protein complex, endocytosis-exocytosis; 1.99A {Homo sapiens} PDB: 2rmy_A 2rnd_A

Probab=80.07  E-value=34  Score=31.06  Aligned_cols=70  Identities=10%  Similarity=0.005  Sum_probs=30.5

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471          322 DPKRAKRILANRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLPFLI  394 (424)
Q Consensus       322 DpKR~RRiLkNRESAqRSReRKK~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqaLEQ  394 (424)
                      +-+-++..++.|+..+.-=++.+..+..|..+-..-.....+...++...++++..   -|..|+..|..+.+
T Consensus       142 ~~~~i~~~ikKR~~k~lDyD~~~~~l~kl~~k~~kd~~kl~kae~el~~ak~~ye~---ln~~L~~eLp~l~~  211 (251)
T 2fic_A          142 QFPDIKSRIAKRGRKLVDYDSARHHYESLQTAKKKDEAKIAKAEEELIKAQKVFEE---MNVDLQEELPSLWN  211 (251)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
T ss_pred             HhHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Confidence            34445555555555544444444444444322111111222233444444444443   36777777766643

>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A

Probab=80.06  E-value=2.3  Score=41.06  Aligned_cols=40  Identities=15%  Similarity=0.241  Sum_probs=26.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471          347 ISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFL  386 (424)
Q Consensus       347 ieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK  386 (424)
                      +.+|+.++..|+..|..|.+.+..++++...|..|++.|+
T Consensus        56 l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL~   95 (251)
T 3m9b_A           56 IHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRLG   95 (251)
T ss_dssp             HHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            4567777777777777777777666666666666665554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	424
d2oa5a1	96	Uncharacterized protein BQLF2 {Murid herpesvirus 4	90.58
d1sknp_	74	Skn-1 {Caenorhabditis elegans [TaxId: 6239]}	89.22
d1nkpa_	88	Myc proto-oncogene protein {Human (Homo sapiens) [	83.25
d1seta1	110	Seryl-tRNA synthetase (SerRS) {Thermus thermophilu	82.23

>d2oa5a1 d.362.1.1 (A:7-102) Uncharacterized protein BQLF2 {Murid herpesvirus 4 [TaxId: 33708]}

class: Alpha and beta proteins (a+b)
fold: BLRF2-like
superfamily: BLRF2-like
family: BLRF2-like
domain: Uncharacterized protein BQLF2
species: Murid herpesvirus 4 [TaxId: 33708]

Probab=90.58  E-value=0.24  Score=39.84  Aligned_cols=72  Identities=17%  Similarity=0.131  Sum_probs=40.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Q 014471          347 ISELEQKVQTLQTEATTLSAQVTIL-------------QVSIAELILPIAEFLIVLLPFLI-RAILIVHLFVFLTLFFFR  412 (424)
Q Consensus       347 ieELE~KVq~Lq~EN~~Ls~Ql~~L-------------qren~~L~~EN~ELK~RLqaLEQ-qaqLrd~L~ealta~f~r  412 (424)
                      +++|+.+++.|+.||..|+.++..-             |++. .+..--..|-  -+++++ .++++..+..+.|.--..
T Consensus         4 ~EeLaaeL~rL~~ENk~LKkkl~~~~~~~~~d~~LT~~qke~-~I~s~~~~lt--s~A~kKIe~kV~~~~~~~vTk~e~e   80 (96)
T d2oa5a1           4 YEEMVKEVERLKLENKTLKQKVKSSGAVSSDDSILTAAKRES-IIVSSSRALG--AVAMRKIEAKVRSRAAKAVTEQELT   80 (96)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTC---------CCBCCHHHHHH-HHHHHHHHHH--HHHHHHHHHHHHHHHTTCCBHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccCCHHHHHH-HHHHHHHHHH--HHHHHHHHHHHHHHhcccccHHHHH
Confidence            6899999999999999999987651             1111 1111111111  112221 333444444455666677


Q ss_pred             HHHhhhhcc
Q 014471          413 EILRGLQVR  421 (424)
Q Consensus       413 EI~~~lq~R  421 (424)
                      |++..+.||
T Consensus        81 ~~l~~lt~R   89 (96)
T d2oa5a1          81 SLLQSLTLR   89 (96)
T ss_dssp             HHHHTCEEE
T ss_pred             HHHhcCeee
Confidence            788878777

>d1sknp_ a.37.1.1 (P:) Skn-1 {Caenorhabditis elegans [TaxId: 6239]}

class: All alpha proteins
fold: A DNA-binding domain in eukaryotic transcription factors
superfamily: A DNA-binding domain in eukaryotic transcription factors
family: A DNA-binding domain in eukaryotic transcription factors
domain: Skn-1
species: Caenorhabditis elegans [TaxId: 6239]

Probab=89.22  E-value=0.072  Score=41.18  Aligned_cols=50  Identities=22%  Similarity=0.293  Sum_probs=37.7

Q ss_pred             CCCHHHHhhhhchhHHHHhhhcChHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471          300 EFNDAELKKIWANEKLAEIALSDPKRAKRILANRQSAARSKERKMRYISE  349 (424)
Q Consensus       300 e~s~~e~KKi~~~~~LaElAl~DpKR~RRiLkNRESAqRSReRKK~YieE  349 (424)
                      .++-+|.+..++...|.|.-+.=-+-+||-=+|+.+||+.|+||....++
T Consensus        24 ~lpv~eFne~l~~~~Lte~Ql~lirDIRRRGKNKvAAqnCRKRKld~~d~   73 (74)
T d1sknp_          24 EMSLSELQQVLKNESLSEYQRQLIRKIRRRGKNKVAARTCRQRRTDRHDK   73 (74)
T ss_dssp             HSCHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred             HCCHHHHHHHHHhCCCCHHHHHHHHHHHHhcccHHHHHHHHHhhhhhhcc
Confidence            34456667777666666555555678899999999999999999987654

>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Myc proto-oncogene protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.25  E-value=1.1  Score=33.75  Aligned_cols=13  Identities=31%  Similarity=0.480  Sum_probs=5.1

Q ss_pred             HHHHHHHHHHHHH
Q 014471          345 RYISELEQKVQTL  357 (424)
Q Consensus       345 ~YieELE~KVq~L  357 (424)
                      .||..|+.+++.|
T Consensus        52 ~yI~~L~~~~~~l   64 (88)
T d1nkpa_          52 AYILSVQAEEQKL   64 (88)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            3444444433333

>d1seta1 a.2.7.1 (A:1-110) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: tRNA-binding arm
family: Seryl-tRNA synthetase (SerRS)
domain: Seryl-tRNA synthetase (SerRS)
species: Thermus thermophilus, strain hb27 [TaxId: 274]

Probab=82.23  E-value=4.8  Score=31.09  Aligned_cols=43  Identities=16%  Similarity=0.030  Sum_probs=22.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Q 014471          353 KVQTLQTEATTLSAQVTILQ-VSIAELILPIAEFLIVLLPFLIR  395 (424)
Q Consensus       353 KVq~Lq~EN~~Ls~Ql~~Lq-ren~~L~~EN~ELK~RLqaLEQq  395 (424)
                      ++..|+.+-..++.++..+. .....|..+-++|+.++..++++
T Consensus        43 ~~e~l~~~rN~~sk~i~k~~~~~~~~l~~~~k~lk~~i~~le~~   86 (110)
T d1seta1          43 RLQEVQTERNQVAKRVPKAPPEEKEALIARGKALGEEAKRLEEA   86 (110)
T ss_dssp             HHHHHHHHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHH
Confidence            33344444444444443221 23455667777777777777654