Citrus Sinensis ID: 014475

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420----
Protein Sequence
MELLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTGDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGSQLPPPLDKYVTSADEDVDKKGVIRLPSLYNAPRDASYISHRTIENHIKELQVFNCFMLNILDHLYYVRYDYVFHIVNSMYCS
Secondary Structure (PSIPRED)
ccEEEEEEccccccEEEEEccccEEEEEEEccccccEEEEEccccEEEccccEEEcccccccEEEEEcccccEEEEccccccEEEEEEcccccEEEEEEccccEEEEEccccEEEEEcccccccEEEEEEcccccEEEEEEccccEEEEEccccccccccccccccEEEEcccccccEEEEEEcccccccEEEEEcccccEEEEEcccccEEEEEcccccEEEEEEcccccEEEEEEccccEEEEEcccccccccccccccccccccccccEEEEEEccccEEEEccccccEEEEEcccccEEEccccccccEEEEEEEccccEEEEccccccEEEEEccccccccccccccccccccccccccEEEccccccccEEEEccHHHHHHHHHEEEEEEEEEEccccEEEEEEEEEEEEEEEEEEcc
Secondary Structure Prediction (SSPRO)
cccEEEEEEccccEEEEEEcccccEEEEEEcccccEEEEEEEccEEccccccEEEEEccccEEEEEEcccccEEEEEcccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEccccccEEEEEEcccccEEEEEccccEEEEEEccccccccccccccccEEEEEEcccccEEEEEEccccccEEEEEEccccEEEEEEcccccEEEEEcccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEcccccEEEEEccccccEEEEEEccccEEEEEccccEEEEEEcccccEEEEEEcccccEEEEEEEEcccccEEEEcccccEEEEcccccEEEEccccEEEEEEccccEEEEEEccccccccccEEEEEcccccEEEEEEccccEEEEEcccccEEEEEEcccccccHccc
Coil and Loop (DISEMBL)
MELLIasssvadtgigcwdlesgaeqlrykscaspphglacvgqrflassqlreqpsassgsilywswskpqvevkslpaepikpiaanshgtyiagggqsgdIYMWEVASGRLLKKWHAHYRAVTCLVfsedgsflisgseDGCVRIWSLLTVFEECESQRASHLYLhsftghtlrITDIVIGYGGVSATIVSASEDRTCKVWSLLKgrllrnivfpsvidaialdpaehvfyagsrdgSIYIAALnaespstssygmHIIGSLSDHSKAVTCLAystgdllisgsedgmvrvwdpiTHNIVRMFRLakgpvnnilvvrrplylnlgsfsnphtssrrhgsqlpppldkyvtsadedvdkkgvirlpslynaprdasyiSHRTIENHIKELQVFNCFMLNILDHLYYVRYDYVFHIVNSMYCS
Flexible Loop (DISEMBL)
MELLIASssvadtgiGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATivsasedrTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTGDllisgsedgMVRVWDPITHNIVRMFrlakgpvnnILVVRRPLYLNLGSfsnphtssrrhgsqlpppLDKYVTSadedvdkkgvirlpslynaprdasyISHRTIENHIKELQVFNCFMLNILDHLYYVRYDYVFHIVNSMYCS
Low Complexity Region (SEG)
MELLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTGDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGSQLPPPLDKYVTSADEDVDKKGVIRLPSLYNAPRDASYISHRTIENHIKELQVFNCFMLNILDHLYYVRYDYVFHIVNSMYCS
Disordered region (IsUnstruct)
*********VADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFL**************SILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAE*****SYGMHIIGSLSDHSKAVTCLAYSTGDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGS********************************KGVIRLPSLYNAPRDASYISHRTIENHIKELQVFNCFMLNILDHLYYVRYDYVFHIVNSMYC*
Disordered Region (DISOPRED)
MELLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTGDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGSQLPPPLDKYVTSADEDVDKKGVIRLPSLYNAPRDASYISHRTIENHIKELQVFNCFMLNILDHLYYVRYDYVFHIVNSMYCS
Disordered Region (DISEMBL)
MELLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASS**********GSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTGDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSN************PPPLDKYVTSADEDVDKKGVIRLPSLYNAPRDASYISHRTIENHIKELQVFNCFMLNILDHLYYVRYDYVFHIVNSMYCS
Disordered Region (DISPRO)
*ELLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTGDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGSQLPPPLDKYVTSADEDVDKKGVIRLPSLYNAPRDASYISHRTIENHIKELQVFNCFMLNILDHLYYVRYDYVFHIVNS*Y**
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MELLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTGDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGSQLPPPLDKYVTSADEDVDKKGVIRLPSLYNAPRDASYISHRTIENHIKELQVFNCFMLNILDHLYYVRYDYVFHIVNSMYCS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	424	2.2.26 [Sep-21-2011]
Q3SZD4	432	WD repeat-containing prot	yes	no	0.841	0.826	0.318	2e-40
Q499N3	431	WD repeat-containing prot	yes	no	0.735	0.723	0.338	7e-40
Q9BV38	432	WD repeat-containing prot	yes	no	0.783	0.768	0.321	2e-38
Q4VBE8	431	WD repeat-containing prot	yes	no	0.733	0.721	0.325	7e-38
Q68EI0	431	WD repeat-containing prot	yes	no	0.742	0.730	0.296	3e-31
Q10272	446	Pre-rRNA-processing prote	yes	no	0.721	0.686	0.270	1e-26
Q6BMP5	515	Pre-rRNA-processing prote	yes	no	0.410	0.337	0.353	4e-24
A3LNM0	525	Pre-rRNA-processing prote	yes	no	0.603	0.487	0.301	1e-23
A5DNK9	451	Pre-rRNA-processing prote	N/A	no	0.655	0.616	0.275	1e-23
Q6C953	426	Pre-rRNA-processing prote	yes	no	0.705	0.701	0.293	1e-22

>sp|Q3SZD4|WDR18_BOVIN WD repeat-containing protein 18 OS=Bos taurus GN=WDR18 PE=2 SV=1

 Score =  167 bits (423), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 125/392 (31%), Positives = 194/392 (49%), Gaps = 35/392 (8%)

Query: 1   MELLIASSSVADT-GIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSAS 59
           ME+ + + S A       W+L SGA  L Y+   + P GLA +   +L ++QL       
Sbjct: 5   MEVAVCTDSAAQLWSCVVWELHSGANLLTYRGGQAGPRGLALLNGEYLLAAQL------G 58

Query: 60  SGSILYWSWS-KPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKW 118
              I  W    K Q++ K +   P+  +  + +G Y+  G  S +IY+WEV++G LL   
Sbjct: 59  KNYICAWELQRKDQLQQKIMCPGPVTCLTTSPNGLYVLAG-ISENIYLWEVSTGNLLVIL 117

Query: 119 HAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRI 178
             HY+ V+CL F+ D S  ISG +D  V  WSL +V +   S+  +    H ++ HTL I
Sbjct: 118 SRHYQDVSCLQFTGDSSHFISGGKDCLVLAWSLCSVLQADPSRTPAPR--HVWSRHTLPI 175

Query: 179 TDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSR 238
           TD+  G+GG  A + +AS D+T K+W +  G LL +++F   I A+ +D AEH  + G  
Sbjct: 176 TDLHCGFGGPLARVATASLDQTVKLWEVSSGELLLSVLFDVGILAVTMDLAEHYMFCGGS 235

Query: 239 DGSIYIAAL-------NAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDG 290
           DGSI+   L                +G    G    H   VTCL+ ST G +L+SGS D 
Sbjct: 236 DGSIFQVDLCTWPGQREKSFQPEQEHGKVFRG----HRNQVTCLSVSTDGSVLLSGSHDE 291

Query: 291 MVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGSQLPPPLDK 350
            VR+WD  +   +R   L KGPV N  ++  P+ +    F        R G  L P  +K
Sbjct: 292 TVRLWDVQSQQCLRTVTL-KGPVTNACIMLAPVSMLSSDF--------RPGLPL-PHFNK 341

Query: 351 YVTSAD--EDVDKKGVIRLPSLYNAPRDASYI 380
           ++  A+  ++  + G++    L+    + SY+
Sbjct: 342 HLLGAEHGDEPHRGGLMLRLGLHQQGSEPSYL 373

May play a role during development.
Bos taurus (taxid: 9913)

>sp|Q499N3|WDR18_RAT WD repeat-containing protein 18 OS=Rattus norvegicus GN=Wdr18 PE=2 SV=1

 Score =  165 bits (417), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 111/328 (33%), Positives = 169/328 (51%), Gaps = 16/328 (4%)

Query: 1   MELLIASSSVADT-GIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSAS 59
           ME+++ + S A       W+L SGA  L Y+   + P GLA +   +L ++Q        
Sbjct: 5   MEVVVCTDSAAPLWSCMVWELHSGANLLTYRGGQAGPRGLALLNGEYLLAAQ------QG 58

Query: 60  SGSILYWSWS-KPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKW 118
              I  W    K Q++ K +   P+  +    +G Y+  G  +  IY+WEV++G LL   
Sbjct: 59  KNYICAWELQRKDQLQQKIMCPGPVTCLTTAPNGLYVLAG-IAESIYLWEVSTGNLLVIL 117

Query: 119 HAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRI 178
             HY+ V+CL F+ DGS  +S  +D  V  WSL +V +   S+  +    H ++ HTL I
Sbjct: 118 SRHYQDVSCLKFTGDGSHFVSAGKDCLVLAWSLCSVLQADPSRILAPR--HVWSQHTLPI 175

Query: 179 TDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSR 238
           TD+  G+GG  A + +AS D+T K+W++  G LL +++F   I ++ +D AEH  + G  
Sbjct: 176 TDLHCGFGGPMARVATASLDQTMKLWAISSGDLLLSVLFDMGITSVTMDLAEHYIFCGGS 235

Query: 239 DGSIYIAALNAE-SPSTSSYG--MHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRV 294
           DGSI+   L +   P   S+    +       H   VTCL+ ST G +L+SGS D  VR+
Sbjct: 236 DGSIFQVDLCSRPGPREQSFQPEQNTGKVFKGHRNQVTCLSVSTDGSILLSGSHDESVRL 295

Query: 295 WDPITHNIVRMFRLAKGPVNNILVVRRP 322
           WD  +   VR   L KGPV N  +   P
Sbjct: 296 WDVKSKQCVRTVPL-KGPVTNAAITLAP 322

May play a role during development.

Rattus norvegicus (taxid: 10116)

>sp|Q9BV38|WDR18_HUMAN WD repeat-containing protein 18 OS=Homo sapiens GN=WDR18 PE=1 SV=2

 Score =  160 bits (405), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 115/358 (32%), Positives = 176/358 (49%), Gaps = 26/358 (7%)

Query: 1   MELLIASSSVADT-GIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSAS 59
           ME+ + + S A       W+L SGA  L Y+   + P GLA +   +L ++QL       
Sbjct: 5   MEVAVCTDSAAPMWSCIVWELHSGANLLTYRGGQAGPRGLALLNGEYLLAAQL------G 58

Query: 60  SGSILYWSWS-KPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKW 118
              I  W    K Q++ K +   P+  + A+ +G Y+  G  +  I++WEV++G LL   
Sbjct: 59  KNYISAWELQRKDQLQQKIMCPGPVTCLTASPNGLYVLAG-VAESIHLWEVSTGNLLVIL 117

Query: 119 HAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRI 178
             HY+ V+CL F+ D S  ISG +D  V +WSL +V +   S+  +    H ++ H L I
Sbjct: 118 SRHYQDVSCLQFTGDSSHFISGGKDCLVLVWSLCSVLQADPSRIPA--PRHVWSHHALPI 175

Query: 179 TDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSR 238
           TD+  G+GG  A + ++S D+T K+W +  G LL +++F   I A+ +D AEH  + G  
Sbjct: 176 TDLHCGFGGPLARVATSSLDQTVKLWEVSSGELLLSVLFDVSIMAVTMDLAEHHMFCGGS 235

Query: 239 DGSIYIAALNAESPSTSSYGMHIIGS----LSDHSKAVTCLAYST-GDLLISGSEDGMVR 293
           +GSI+   L    P       H           H   VTCL+ ST G +L+SGS D  VR
Sbjct: 236 EGSIFQVDLFTW-PGQRERSFHPEQDAGKVFKGHRNQVTCLSVSTDGSVLLSGSHDETVR 294

Query: 294 VWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSFS--------NPHTSSRRHGSQ 343
           +WD  +   +R   L KGPV N  ++  P+ +    F         N H     HG +
Sbjct: 295 LWDVQSKQCIRTVAL-KGPVTNAAILLAPVSMLSSDFRPSLPLPHFNKHLLGAEHGDE 351

May play a role during development.

Homo sapiens (taxid: 9606)

>sp|Q4VBE8|WDR18_MOUSE WD repeat-containing protein 18 OS=Mus musculus GN=Wdr18 PE=1 SV=1

 Score =  158 bits (400), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 107/329 (32%), Positives = 166/329 (50%), Gaps = 18/329 (5%)

Query: 1   MELLIASSSVADT-GIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSAS 59
           ME+++ + + A       W+L SGA  L Y+   + P GLA +   +L ++Q        
Sbjct: 5   MEVVVCTDAAAQLWSCVVWELHSGANLLTYRGGQAGPRGLALLNGEYLLAAQ------QG 58

Query: 60  SGSILYWSWS-KPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKW 118
              I  W    K Q++ K +   P+  +    +G Y+  G  +  IY+WEV +G LL   
Sbjct: 59  KNYICAWELQRKDQLQQKIMCPGPVTCLTTAPNGLYVLAG-IAESIYLWEVCTGNLLVIL 117

Query: 119 HAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRI 178
             HY+ V+CL F+ DGS  +S  +D     WSL +V +   S+  +    H ++ HTL I
Sbjct: 118 SRHYQDVSCLKFTGDGSHFVSAGKDCLALAWSLCSVLQADPSRILAPR--HVWSQHTLPI 175

Query: 179 TDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSR 238
           TD+  G+GG  A + +AS D+T K+W++  G LL +++F   I ++ +D AEH  + G  
Sbjct: 176 TDLHCGFGGPMARVATASLDQTVKLWAISSGDLLLSVLFDMGITSVTMDLAEHHIFCGGS 235

Query: 239 DGSIYIAALNAESPSTSSYGMHIIGS----LSDHSKAVTCLAYST-GDLLISGSEDGMVR 293
           DGSI+   L    P    +      +       H   VTCL+ ST G +L+SGS D  VR
Sbjct: 236 DGSIFQVDL-CSWPGLREHSFQPEQNTGKVFKGHRNQVTCLSVSTDGSVLLSGSHDESVR 294

Query: 294 VWDPITHNIVRMFRLAKGPVNNILVVRRP 322
           +WD  +   +R   L KGPV N  ++  P
Sbjct: 295 LWDVKSKQCLRTVTL-KGPVTNAAIILAP 322

May play a role during development.

Mus musculus (taxid: 10090)

>sp|Q68EI0|WDR18_DANRE WD repeat-containing protein 18 OS=Danio rerio GN=wdr18 PE=2 SV=1

 Score =  136 bits (343), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 100/337 (29%), Positives = 164/337 (48%), Gaps = 22/337 (6%)

Query: 18  WDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWS-WSKPQVEVK 76
           +D  +G+E L Y+   +    L  +   ++  +QL +        I  W    K Q++ K
Sbjct: 23  YDPHTGSEFLSYRGGNTSSRSLTILNGEYILGAQLGKN------YINVWEIQRKDQLQQK 76

Query: 77  SLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSF 136
            +    +  + A+  G Y+  G     IY+WEV++G LL     H++ ++C+ F++D S 
Sbjct: 77  IVCPGIVTCLCASPDGLYVLAGIAEA-IYLWEVSTGNLLAILSRHFQDLSCIKFTDDSSH 135

Query: 137 LISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSAS 196
            +SG +D    IW+L +V +  +S R      H  + H+L ITDI  G  G  A + +AS
Sbjct: 136 FVSGGKDNLAFIWNLSSVVQ-LDSSRTPEPR-HILSRHSLPITDIHCGLMGPQARVATAS 193

Query: 197 EDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPS--- 253
            D+T KVW +  G +L +++F   I ++  DP E+  + G  DG+I+  +L + S S   
Sbjct: 194 LDQTVKVWEISSGEMLLSVLFDVGIMSVTFDPCEYFLFCGGSDGNIFQVSLCSTSLSRDK 253

Query: 254 ---TSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLA 309
              + S G  +      H   VTCL+ S  G +L+SGS D  VR+WD  +   +      
Sbjct: 254 TFQSDSEGNQV---FKGHRNLVTCLSVSMDGTVLLSGSNDETVRMWDVQSKQCIWTIN-H 309

Query: 310 KGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGSQLPP 346
           +GPV N  ++  P  + L S S+P     R    L P
Sbjct: 310 RGPVTNAAIIPAPANMFL-SDSHPAVPLPRFSRHLNP 345

Involved in left-right determination through controlling the correct clustering and migration of dorsal forerunner cells (DFCs) and Kupffer's vesicle formation.

Danio rerio (taxid: 7955)

>sp|Q10272|IPI3_SCHPO Pre-rRNA-processing protein crb3/ipi3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=crb3 PE=1 SV=1

 Score =  121 bits (304), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 94/348 (27%), Positives = 161/348 (46%), Gaps = 42/348 (12%)

Query: 1   MELLIASSSVAD---TGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPS 57
           MELL++     +   + + C +L +G     ++  +SP     C     L S+Q   +P 
Sbjct: 1   MELLLSGCEAIEGEPSNVLCHNLHTGTLVSTFRQ-SSPAKNATCTTLNHLLSAQ-HTRPQ 58

Query: 58  ASSGSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKK 117
            +       ++ K  ++   +  E +  + ++  G+++A G + G++Y+W + SG L+  
Sbjct: 59  LN-----IHNFGKEILDQSIILPEILICVQSSPCGSWLAAGTEKGNLYIWSLKSGALIYF 113

Query: 118 WHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEE---CESQRASHLYLHSFTGH 174
           + AHY+ +T L FS DG  L + S DG V  W + T+ ++    E+  +S   +  F+GH
Sbjct: 114 FRAHYQPLTILKFSNDGMVLFTASNDGDVFAWLISTLVDQNSTFETSNSSVKAISHFSGH 173

Query: 175 TLRITDIVIGYGG-VSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVF 233
              I  + IG G  VS  + +ASED T ++W +  G LL  I  PS    + +DP+E V 
Sbjct: 174 KRSIVSMEIGPGPIVSGRLYTASEDNTIRIWDVSTGNLLTTIALPSTPSCMTVDPSERVV 233

Query: 234 YAGSRDGSIYIAALNAESPSTSSY-------------------GMHIIGSLSD--HSKAV 272
           Y G+  G I+I      S  +++                    GM  +   +D   S  +
Sbjct: 234 YVGNEKGIIWIPLYTGSSTFSNNVKEKKRVTSVDNTTIPNAIGGMGRVVDYNDSRESSII 293

Query: 273 TCLAYST-------GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPV 313
           +C +  T         LLISG +DG V VWD ++  ++R       PV
Sbjct: 294 SCQSPITTLTVSFDASLLISGDKDGNVLVWDSVSRQVLRRLVQYYSPV 341

Involved in the processing of ITS2 sequences from 35S pre-rRNA.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q6BMP5|IPI3_DEBHA Pre-rRNA-processing protein IPI3 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=IPI3 PE=3 SV=2

 Score =  112 bits (281), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 65/184 (35%), Positives = 101/184 (54%), Gaps = 10/184 (5%)

Query: 95  IAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIW---SL 151
           +AGG ++G IY+WE+ASG LL    AHY+A+T + FS+ G+FL+SGS D    +W    L
Sbjct: 121 LAGGSKTGKIYVWELASGNLLCVKEAHYQAITAIKFSQCGTFLVSGSSDARCMVWRTSDL 180

Query: 152 LTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSAT--IVSASEDRTCKVWSLLKG 209
           ++V+ + E    +     SFT H+L ITD+ I   G+ +   + + S D T +++ ++  
Sbjct: 181 ISVYNKDEESSINIKPFASFTDHSLPITDLAISEAGIISDLRLYTVSRDSTLRIYDIMTK 240

Query: 210 RLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHS 269
            LL   V PS I+ +  DPA    Y G  +G I    L   +P+TS     ++ S+    
Sbjct: 241 SLLTTFVLPSGIECVTKDPANRACYVGLSNGLIRTVPLYQINPNTS-----VLESIGGRG 295

Query: 270 KAVT 273
           K VT
Sbjct: 296 KIVT 299

Component of the RIX1 complex required for processing of ITS2 sequences from 35S pre-rRNA.

Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) (taxid: 284592)

>sp|A3LNM0|IPI3_PICST Pre-rRNA-processing protein IPI3 OS=Scheffersomyces stipitis (strain ATCC 58785 / CBS 6054 / NBRC 10063 / NRRL Y-11545) GN=IPI3 PE=3 SV=2

 Score =  111 bits (277), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 95/315 (30%), Positives = 144/315 (45%), Gaps = 59/315 (18%)

Query: 95  IAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWS---L 151
           +AGG +SG IY+WE++SG LL    AHY+ VT + FS+ G+FL++GS+D    +W    L
Sbjct: 122 LAGGSKSGKIYVWELSSGSLLCVKEAHYQNVTVVKFSKCGTFLVAGSDDARCTVWKTLDL 181

Query: 152 LTVF--EECESQRASHLYLHSFTGHTLRITDIVIGYGGV--SATIVSASEDRTCKVWSLL 207
           + VF  +  ES R    YL + T +TL +TD+V+   GV     + + S D T +++ ++
Sbjct: 182 IAVFDGDNDESSRNFKPYL-AITDNTLAVTDLVLNEPGVINDLKLYTVSRDNTLRIYDII 240

Query: 208 KGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTS---SYG--MHII 262
             +LL   +    I+++  DPA    Y G  +G I    L   +P+TS   S G    II
Sbjct: 241 TKQLLTTFILSEAIESVVADPAGRAVYVGLSNGLIRTIPLYNINPNTSVLESIGGNQKII 300

Query: 263 GSLSD---------HSKAVTCLAYST-------------------------------GDL 282
              SD         H + ++  A  T                               G  
Sbjct: 301 TVESDPNLKFTFLHHQQRISADANKTSILHKNLNNKKNDTENANKPIHVTKLAISLDGTN 360

Query: 283 LISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLY-LNLGSFSNPHTSSRRHG 341
           LISG   G V V D +T  +V+ F     P++ I V   P   LN+ S S      ++H 
Sbjct: 361 LISGDSLGRVYVSDIVTRQVVKTFTPCNSPISQIQVSSAPFEALNVSSNS---KVDKKH- 416

Query: 342 SQLPPPLDKYVTSAD 356
            +L P L + +T  D
Sbjct: 417 -RLIPQLKRVLTGRD 430

Component of the RIX1 complex required for processing of ITS2 sequences from 35S pre-rRNA.

Scheffersomyces stipitis (strain ATCC 58785 / CBS 6054 / NBRC 10063 / NRRL Y-11545) (taxid: 322104)

>sp|A5DNK9|IPI3_PICGU Pre-rRNA-processing protein IPI3 OS=Meyerozyma guilliermondii (strain ATCC 6260 / CBS 566 / DSM 6381 / JCM 1539 / NBRC 10279 / NRRL Y-324) GN=IPI3 PE=3 SV=2

 Score =  110 bits (276), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 93/338 (27%), Positives = 145/338 (42%), Gaps = 60/338 (17%)

Query: 41  CVGQR-----FLASSQLREQPSASSGSILYWSWSKPQVEVKSLPAEPIKPIAANSHGT-- 93
           C GQ+     FLA S+           I  +SW K   + +    EP+  +A   H +  
Sbjct: 42  CSGQKAGDRLFLAGSK---------PLITVYSWGKESPDQRIPVPEPLTCMALCKHPSNE 92

Query: 94  -------------YIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISG 140
                         +AGG  SG +Y+WE++SG L+    AHY+A+  L FSE G++L+SG
Sbjct: 93  KINHKVPTFQLPWLLAGGSASGKLYIWELSSGNLVCVKEAHYQAINVLKFSECGTYLVSG 152

Query: 141 SEDGCVRIWSL--LTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSAT-IVSASE 197
             D    +W    L   ++ E+Q+ +     +F  HTL +TDI +  G  S   + S+S+
Sbjct: 153 GADARCSVWKTLDLVTIDDPETQKTASAL--TFMDHTLAVTDIWLTTGIRSDIRLYSSSK 210

Query: 198 DRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSY 257
           D T + + +  G+L+   V P  ++ +A+DPA    YAG  DG+I        +P TS  
Sbjct: 211 DGTVRNYDITSGKLITTFVLPLSVECLAVDPAGRACYAGLSDGTIRTVLQYKVNPHTS-- 268

Query: 258 GMHIIGSLSDHSKAVTCLAYST---------------------GDLLISGSEDGMVRVWD 296
              ++ ++  + K VT                           G  +IS  E G V V D
Sbjct: 269 ---VLEAVGGNGKVVTLATDPELRESFVHHQPHRVTSVKVSLDGTTIISSDESGRVMVAD 325

Query: 297 PITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPH 334
            +T  +V+    A  PV  + V         G F   H
Sbjct: 326 AVTTQVVKALSPATSPVIYLAVDTVVAGSQFGRFEKKH 363

Component of the RIX1 complex required for processing of ITS2 sequences from 35S pre-rRNA.

Meyerozyma guilliermondii (strain ATCC 6260 / CBS 566 / DSM 6381 / JCM 1539 / NBRC 10279 / NRRL Y-324) (taxid: 294746)

>sp|Q6C953|IPI3_YARLI Pre-rRNA-processing protein IPI3 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=IPI3 PE=3 SV=1

 Score =  107 bits (268), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 101/344 (29%), Positives = 172/344 (50%), Gaps = 45/344 (13%)

Query: 1   MELLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACV-----GQRFLASSQLREQ 55
           ME LI  ++  + G    DL SG     +K+  + P+    +     G   L S+Q +  
Sbjct: 1   MEELIIYTT--NKGACAVDLHSGNNITHFKNDETAPNLSVFLTNTPSGNPLLFSAQTK-- 56

Query: 56  PSASSGSILY-WSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRL 114
                G++++ ++W++  V+ + +  E +  +AA++ GT++AGG  SG +++WE+ASG+L
Sbjct: 57  -----GAMMHVYNWNRESVDQQIVLPEKLSCLAASTCGTWLAGGSASGRLFVWELASGKL 111

Query: 115 LKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVF---EECESQRASHLYLHSF 171
           +     HY+AVT L F+ DG  L S S+D  V  WSL+T+    ++C+          ++
Sbjct: 112 VFSREVHYQAVTKLAFT-DG-LLFSTSKDARVLGWSLVTMASDPKDCQP-------CITW 162

Query: 172 TGHTLRITDIVIGYGGVSAT-IVSASEDRTCKVWSLLKGRLLRNIVFPS--VIDAIALDP 228
           T H L + D+V+G G    T + + S D+T ++W +    LL  I  P+      +A+D 
Sbjct: 163 TEHNLGVVDLVVGGGPTRDTRVFTVSTDKTVRIWDVSSTALLTTITLPAAETPTTLAVDQ 222

Query: 229 AEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIG-----------SLSDHSKAVTCLAY 277
            E   + G   G+I   +L   SPST   G+  +G           +LS H  AVT LA 
Sbjct: 223 LERTLFVGCASGNILSVSLYDVSPST---GLVSVGGASGVVESGNVALSHHKSAVTSLAL 279

Query: 278 S-TGDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVR 320
           S    LL+S  + G + VWD  +  + R  +  +  +N +  V+
Sbjct: 280 SFDATLLVSADDKGFICVWDLPSRQVSRSIKQPRAEMNPVTYVQ 323

Involved inthe processing of ITS2 sequences from 35S pre-rRNA.

Yarrowia lipolytica (strain CLIB 122 / E 150) (taxid: 284591)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	424
224137550	446	predicted protein [Populus trichocarpa]	0.917	0.872	0.689	1e-153
255538272	452	WD-repeat protein, putative [Ricinus com	0.919	0.862	0.699	1e-151
225458641	448	PREDICTED: WD repeat-containing protein	0.915	0.866	0.705	1e-151
356526563	449	PREDICTED: WD repeat-containing protein	0.919	0.868	0.675	1e-148
356567138	449	PREDICTED: WD repeat-containing protein	0.919	0.868	0.667	1e-146
449447253	451	PREDICTED: WD repeat-containing protein	0.908	0.853	0.646	1e-143
357502523	441	WD repeat-containing protein [Medicago t	0.919	0.884	0.588	1e-129
297816142	438	hypothetical protein ARALYDRAFT_485276 [	0.905	0.876	0.575	1e-128
15229101	438	root initiation defective 3 protein [Ara	0.905	0.876	0.545	1e-122
21592898	438	unknown [Arabidopsis thaliana]	0.905	0.876	0.545	1e-122

>gi|224137550|ref|XP_002327154.1| predicted protein [Populus trichocarpa] gi|222835469|gb|EEE73904.1| predicted protein [Populus trichocarpa]

 Score =  547 bits (1409), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 271/393 (68%), Positives = 314/393 (79%), Gaps = 4/393 (1%)

Query: 2   ELLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSG 61
           E++IASSS+ D GIGCWDL++G E LRYKSCASPPHGL  VG+RFLASSQL++ P ASSG
Sbjct: 3   EIVIASSSI-DGGIGCWDLQTGTEHLRYKSCASPPHGLISVGRRFLASSQLQD-PKASSG 60

Query: 62  SILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAH 121
           +ILYWSWS+PQVEVK  P EPIKP+ ANS GTY+ GGG SG+IY WEVA+GRLLKKW AH
Sbjct: 61  AILYWSWSRPQVEVKCFPEEPIKPLVANSEGTYLVGGGLSGNIYFWEVATGRLLKKWRAH 120

Query: 122 YRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDI 181
           YRAVTCLVF+ED S L+SGSEDG VR+W LL +F++ + ++AS LY HSF  HTLR+TDI
Sbjct: 121 YRAVTCLVFTEDDSLLVSGSEDGSVRVWPLLMIFDDYQMEQASQLYEHSFQEHTLRVTDI 180

Query: 182 VIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGS 241
           V GYGG +A I+SASEDRTCKVWSL KG LLRNIVFPS+ID+I LDP EHVFYAG RDG 
Sbjct: 181 VTGYGGGNAIIISASEDRTCKVWSLSKGILLRNIVFPSIIDSITLDPGEHVFYAGGRDGK 240

Query: 242 IYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITH 300
           I+IAAL A+S S  S+ +HIIGSLS HSK VTCLAYST G++L+SGSEDGM+RVWDP TH
Sbjct: 241 IHIAALGADSSSIKSHWLHIIGSLSSHSKNVTCLAYSTNGNVLLSGSEDGMIRVWDPKTH 300

Query: 301 NIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGSQLPPPLDKYVTSADEDVD 360
           NIVR+F+ AKGPVNNI V+ RP YLN  S SN   SSRRHG  LPPPL KY+ + DE V 
Sbjct: 301 NIVRVFKHAKGPVNNIHVLNRPAYLNPRSLSNVQASSRRHGLSLPPPLSKYINTMDEKVI 360

Query: 361 KKGVIRLPSLYNAPRDASYISHRTIENHIKELQ 393
              V  L +  N P DAS IS + I   IKELQ
Sbjct: 361 SAAV-NLQATCNNPLDASCISSQVINCQIKELQ 392

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255538272|ref|XP_002510201.1| WD-repeat protein, putative [Ricinus communis] gi|223550902|gb|EEF52388.1| WD-repeat protein, putative [Ricinus communis]

 Score =  541 bits (1395), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 275/393 (69%), Positives = 323/393 (82%), Gaps = 3/393 (0%)

Query: 2   ELLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSG 61
           ELL+ASSS+ D GIGCWDL++GAE LRYKSCASPPHGL CVG RFLA+SQLR+   ASSG
Sbjct: 4   ELLLASSSI-DGGIGCWDLQTGAEHLRYKSCASPPHGLTCVGSRFLAASQLRDS-HASSG 61

Query: 62  SILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAH 121
           SI+YWSWSKPQVEVK  P EPIKP+ AN  GTYI GGG SG IY+WEVA+GRLLKKW AH
Sbjct: 62  SIVYWSWSKPQVEVKCFPEEPIKPLVANKEGTYIIGGGISGHIYIWEVATGRLLKKWRAH 121

Query: 122 YRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDI 181
           YRAVTCLVF+ED SFL+SGSEDG VR+WSLL +F+E ++++AS LY HSF+ HTLR+TD+
Sbjct: 122 YRAVTCLVFTEDDSFLVSGSEDGSVRVWSLLMMFDEYQTEQASQLYEHSFSEHTLRVTDV 181

Query: 182 VIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGS 241
           V GYGG +  IVSAS+DRTCKVWSL KG LLRNIVFPS+ID++ALDP E+VFYAG RDG+
Sbjct: 182 VTGYGGGNTIIVSASDDRTCKVWSLSKGNLLRNIVFPSIIDSLALDPGENVFYAGCRDGN 241

Query: 242 IYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYS-TGDLLISGSEDGMVRVWDPITH 300
           IYIAALNA+S ST S+ +HIIGSLS HSK VTCLAYS  G+LL++GSEDG++RVWDP +H
Sbjct: 242 IYIAALNADSSSTKSHWLHIIGSLSSHSKPVTCLAYSANGNLLLAGSEDGIIRVWDPRSH 301

Query: 301 NIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGSQLPPPLDKYVTSADEDVD 360
           NIVR F+ AKGPVNNI +V+RP YLN  + S    SSRRHGS LPPPLDKYV S D+ + 
Sbjct: 302 NIVRTFKHAKGPVNNIQIVKRPHYLNPRASSIVQASSRRHGSSLPPPLDKYVNSTDKSIG 361

Query: 361 KKGVIRLPSLYNAPRDASYISHRTIENHIKELQ 393
              V+RL    N P D SY+S++ I N IKELQ
Sbjct: 362 STAVVRLQDTCNNPLDVSYVSYQVIANQIKELQ 394

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225458641|ref|XP_002284832.1| PREDICTED: WD repeat-containing protein 18 [Vitis vinifera] gi|302142303|emb|CBI19506.3| unnamed protein product [Vitis vinifera]

 Score =  540 bits (1392), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 278/394 (70%), Positives = 317/394 (80%), Gaps = 6/394 (1%)

Query: 2   ELLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSG 61
           E+++ASS V D GI CWDL+SGAE LR++SCASPPHGL CV  RF ASSQLR+  S+SS 
Sbjct: 5   EVVVASSPV-DAGISCWDLQSGAEHLRHRSCASPPHGLVCVADRFFASSQLRDSSSSSSS 63

Query: 62  S-ILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHA 120
             I YWSWSKPQVEVKS PAEPIKP+AAN  GTYIAGGG SGDIY WEVASGRLLKKWHA
Sbjct: 64  GSIFYWSWSKPQVEVKSFPAEPIKPLAANREGTYIAGGGLSGDIYFWEVASGRLLKKWHA 123

Query: 121 HYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITD 180
           HYRAVTCLVFS+D S LISG+EDGCVR+WSL  +F++   + A HLY HSF+ HTLR+TD
Sbjct: 124 HYRAVTCLVFSDDESLLISGAEDGCVRVWSLFMIFDDLRREEAGHLYEHSFSEHTLRVTD 183

Query: 181 IVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDG 240
           IV GYGG +A IVSASEDRTCKVWSL  GRLLRN+VFPS+IDAIALDP EHVFYAGSRDG
Sbjct: 184 IVTGYGGGNAIIVSASEDRTCKVWSLSTGRLLRNVVFPSIIDAIALDPGEHVFYAGSRDG 243

Query: 241 SIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPIT 299
            IYIAALNA   S++SYGMHIIGSLSDHSKAVTCLA++T G LL+SGSEDGMVRVWD  T
Sbjct: 244 KIYIAALNAVGSSSNSYGMHIIGSLSDHSKAVTCLAFATDGILLVSGSEDGMVRVWDTKT 303

Query: 300 HNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGSQLPPPLDKYVTSADEDV 359
            NI R+F+ AKGPV+NILVVRRP   N  +  N  TSS++HGS L PPLDKY+ S+DE+ 
Sbjct: 304 RNIFRIFKHAKGPVSNILVVRRP---NDSNPRNSQTSSKKHGSFLSPPLDKYLNSSDENE 360

Query: 360 DKKGVIRLPSLYNAPRDASYISHRTIENHIKELQ 393
           D K  I   + ++   DASY S   I + IKELQ
Sbjct: 361 DAKVFIGCQTTFSKSVDASYRSCHIIIDQIKELQ 394

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356526563|ref|XP_003531886.1| PREDICTED: WD repeat-containing protein 18-like [Glycine max]

 Score =  532 bits (1371), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 266/394 (67%), Positives = 312/394 (79%), Gaps = 4/394 (1%)

Query: 1   MELLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASS 60
           ME+++ASSSV D GIGCWDL +GAEQLRYKSC SP HGL  VG RF+ASSQLR+ P+A+ 
Sbjct: 1   MEVVLASSSV-DGGIGCWDLHTGAEQLRYKSCTSPSHGLISVGARFIASSQLRDDPAAT- 58

Query: 61  GSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHA 120
           G +LYWSWSKPQVEVKS PAE IKPIAAN  GTYIAGG  SGDIY+WEV +GRLLKKW A
Sbjct: 59  GYVLYWSWSKPQVEVKSFPAEQIKPIAANHPGTYIAGGAPSGDIYLWEVETGRLLKKWRA 118

Query: 121 HYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITD 180
           H+RAV+CLVFSED S L+SGSEDG VR+WSL  +F++   Q+AS+LY +SF+ HTL +TD
Sbjct: 119 HFRAVSCLVFSEDDSLLVSGSEDGSVRVWSLFMIFDDLRCQQASNLYEYSFSEHTLTVTD 178

Query: 181 IVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDG 240
           +VIG GG +A IVSAS DRTCKVWSL +G LLRNIVFPS+I+ IALDPAEHVFYAGS DG
Sbjct: 179 VVIGNGGCNAIIVSASNDRTCKVWSLSRGMLLRNIVFPSIINCIALDPAEHVFYAGSEDG 238

Query: 241 SIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTGD-LLISGSEDGMVRVWDPIT 299
            I+IAALN ES +T++YGMHIIGS S+HS  VTCLAY T + LLI+GSEDGMVRVW+  T
Sbjct: 239 KIFIAALNTESITTNNYGMHIIGSFSNHSNQVTCLAYGTSENLLITGSEDGMVRVWNART 298

Query: 300 HNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGSQLPPPLDKYVTSADEDV 359
            NIVRMF+ AKGPVNNILVVRR    +    SN   SSR+ GS LPPPL+KY  S D+D+
Sbjct: 299 RNIVRMFKHAKGPVNNILVVRRENDSSNHISSNVQASSRKQGSNLPPPLEKYANSIDDDL 358

Query: 360 DKKGVIRLPSLYNAPRDASYISHRTIENHIKELQ 393
           D K +I L     +  D SY+S   I N+IKELQ
Sbjct: 359 DMKTMISLGGGRRSV-DPSYLSSHVISNYIKELQ 391

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356567138|ref|XP_003551778.1| PREDICTED: WD repeat-containing protein 18-like [Glycine max]

 Score =  525 bits (1353), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 263/394 (66%), Positives = 309/394 (78%), Gaps = 4/394 (1%)

Query: 1   MELLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASS 60
           ME+++ASSSV D GIGCWDL +GAEQLRYKSC SP HGL  V  RF+ASSQLRE  SA  
Sbjct: 1   MEVVLASSSV-DGGIGCWDLHTGAEQLRYKSCTSPSHGLVSVAARFIASSQLREDQSAP- 58

Query: 61  GSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHA 120
           GS+L+WSWSKPQVEVKS PAE IKP+A N  GT+IA G  SGDIY+WEV +GRLLKKWHA
Sbjct: 59  GSVLFWSWSKPQVEVKSFPAEQIKPLATNHPGTFIAAGAPSGDIYLWEVETGRLLKKWHA 118

Query: 121 HYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITD 180
           H+RAV+CLVFSED S L+SGSEDG VR+WSL  +F++  +Q+AS LY +SF+ HTL +TD
Sbjct: 119 HFRAVSCLVFSEDDSLLVSGSEDGSVRVWSLFMIFDDLRNQQASSLYEYSFSEHTLTVTD 178

Query: 181 IVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDG 240
           +VIG GG +A IVSAS+DRTCKVWSL +G LLRNIVFPS+I+ IALDPAEHVFYAGS DG
Sbjct: 179 VVIGNGGCNAIIVSASKDRTCKVWSLSRGMLLRNIVFPSIINCIALDPAEHVFYAGSEDG 238

Query: 241 SIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAY-STGDLLISGSEDGMVRVWDPIT 299
            I+IAALN ES +T++YGMHII S S+HS  VTCLAY S+ +LLISGSEDGMVRVW+  T
Sbjct: 239 KIFIAALNTESIATNNYGMHIISSFSNHSNQVTCLAYGSSENLLISGSEDGMVRVWNART 298

Query: 300 HNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGSQLPPPLDKYVTSADEDV 359
            NIVRMF+ +KGPVNNILVVRR    +    SN   SSR+ GS LPPPL+KY  S D+D 
Sbjct: 299 RNIVRMFKHSKGPVNNILVVRRENDSSNHISSNVQASSRKQGSNLPPPLEKYANSIDDDS 358

Query: 360 DKKGVIRLPSLYNAPRDASYISHRTIENHIKELQ 393
           D K +I L     +  D SYIS   I N+IKELQ
Sbjct: 359 DMKTMISLGGGRKSV-DPSYISSHVISNYIKELQ 391

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449447253|ref|XP_004141383.1| PREDICTED: WD repeat-containing protein 18-like [Cucumis sativus] gi|449531442|ref|XP_004172695.1| PREDICTED: WD repeat-containing protein 18-like [Cucumis sativus]

 Score =  513 bits (1322), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 260/402 (64%), Positives = 319/402 (79%), Gaps = 17/402 (4%)

Query: 1   MELLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASS 60
           M LL+ASSS+ D+GIGCWDL +G+EQLRYKSCASPPHGL CVG++FLA SQLR+ P+A++
Sbjct: 1   MVLLVASSSI-DSGIGCWDLHTGSEQLRYKSCASPPHGLVCVGRKFLACSQLRD-PAATA 58

Query: 61  GSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHA 120
           GS+LYWSWSKPQVEVKS PAEPI  +A+N  GTYI GGG SGDIY+WEV SGRLLKKWHA
Sbjct: 59  GSVLYWSWSKPQVEVKSFPAEPIMALASNHEGTYIVGGGFSGDIYLWEVLSGRLLKKWHA 118

Query: 121 HYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITD 180
           HYRAVTCLVFSED S L+SGSEDGC+R+WSL+TVF++   + A HLY HSFTGH L +TD
Sbjct: 119 HYRAVTCLVFSEDDSLLVSGSEDGCIRVWSLITVFDDGWQREAKHLYEHSFTGHNLPVTD 178

Query: 181 IVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDG 240
           IV+GYGG +A I+S+S DRTCKVWSL KG+LLRNI+FPS+IDAIALDP EHVFY G RDG
Sbjct: 179 IVVGYGGFNAIIISSSVDRTCKVWSLSKGKLLRNIIFPSIIDAIALDPGEHVFYGGGRDG 238

Query: 241 SIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAY-STGDLLISGSEDGMVRVWDPIT 299
            IY AALNA+ PS+S YG+HI+GS+S+ SK+VT LAY S+G+LLISGSEDG +RVWD  T
Sbjct: 239 KIYTAALNAKCPSSSDYGLHILGSISNQSKSVTSLAYCSSGNLLISGSEDGAIRVWDTRT 298

Query: 300 HNIVRMFRLAK----GPVNNILVV-RRPLYLNLGSFSNPHTSSRRHGSQLPPPLDKYVTS 354
           +N++R+FR +K    GPVNNIL+V ++PL     S S    S R+H   LPP L K+  S
Sbjct: 299 NNVIRVFRHSKGNKAGPVNNILLVQQQPL---PKSQSTSQGSLRKHRPLLPPALAKFENS 355

Query: 355 ADEDVDKKGVIRLPSLYNAPRDA---SYISHRTIENHIKELQ 393
            DED +  GVI  PS    P+++   S++S   +++ I ELQ
Sbjct: 356 KDED-EYTGVIIDPS--GPPKESTGFSFLSSHVMDDQITELQ 394

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357502523|ref|XP_003621550.1| WD repeat-containing protein [Medicago truncatula] gi|87241484|gb|ABD33342.1| WD40-like [Medicago truncatula] gi|355496565|gb|AES77768.1| WD repeat-containing protein [Medicago truncatula]

 Score =  469 bits (1208), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 232/394 (58%), Positives = 293/394 (74%), Gaps = 4/394 (1%)

Query: 1   MELLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASS 60
           M +++ASS+ A  GIGCWDL +G+EQ+RYKS +SP HGL  VG RFLASSQLR+  S SS
Sbjct: 1   MVVVLASSTDASGGIGCWDLNTGSEQIRYKSFSSPSHGLVSVGDRFLASSQLRD-ASTSS 59

Query: 61  GSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHA 120
            S+ +WSWSKPQVEVKS P+EPI P+A+N  GTY+ GGG SG+IY+WEV +GRLLKKWH 
Sbjct: 60  ASVFFWSWSKPQVEVKSFPSEPITPLASNHSGTYLVGGGLSGEIYLWEVETGRLLKKWHG 119

Query: 121 HYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITD 180
           H  AVTCLVFSED S LISG ++G VR+WSLL +F++   + AS +Y +SF+ HTL + D
Sbjct: 120 HNTAVTCLVFSEDDSLLISGFKNGSVRVWSLLMIFDDVRRREASKIYEYSFSDHTLCVND 179

Query: 181 IVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDG 240
           +VIGYGG +A I SAS+DRTCKVW+L  G L RNIVFPS I AIALDPAEHV YAGS DG
Sbjct: 180 VVIGYGGCNAIIASASDDRTCKVWTLSNGMLQRNIVFPSKIKAIALDPAEHVLYAGSEDG 239

Query: 241 SIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTGD-LLISGSEDGMVRVWDPIT 299
            I++AALN    +T+    +I GS S+HSKAVTCLAYS  +  LISGS+DG+VRVW+  T
Sbjct: 240 KIFVAALNTTRITTNDQVSYITGSFSNHSKAVTCLAYSAAENFLISGSDDGIVRVWNAST 299

Query: 300 HNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGSQLPPPLDKYVTSADEDV 359
           HNI+R+F+ AKGP+ NILV+R+   L+    SN   +S++ G+Q  PPL+KY  S DED 
Sbjct: 300 HNIIRVFKHAKGPITNILVLRQENDLSNPMSSNLQGTSKKKGAQF-PPLEKYANSMDEDS 358

Query: 360 DKKGVIRLPSLYNAPRDASYISHRTIENHIKELQ 393
           DK  ++ L    N   D SY+S + I ++ KELQ
Sbjct: 359 DKTTIVSLGG-GNICMDVSYLSSQVISSYSKELQ 391

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297816142|ref|XP_002875954.1| hypothetical protein ARALYDRAFT_485276 [Arabidopsis lyrata subsp. lyrata] gi|297321792|gb|EFH52213.1| hypothetical protein ARALYDRAFT_485276 [Arabidopsis lyrata subsp. lyrata]

 Score =  465 bits (1196), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 229/398 (57%), Positives = 293/398 (73%), Gaps = 14/398 (3%)

Query: 1   MELLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASS 60
           ME+ + +SS  D GIG WDL++G EQLR+K CASP HGL  VG++FLASSQLR++ S SS
Sbjct: 1   MEISVIASSSIDEGIGSWDLKTGKEQLRFKQCASPAHGLTAVGEKFLASSQLRKE-STSS 59

Query: 61  GSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHA 120
           GSI YWSW+KPQVEV+S P EPIK + AN+ GTY+ GGG SGDIY+WEVA+G+LLKKWH 
Sbjct: 60  GSIFYWSWTKPQVEVRSFPVEPIKALVANNEGTYLVGGGSSGDIYLWEVATGKLLKKWHG 119

Query: 121 HYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITD 180
           HYR+VTCLVFS D S LISGS+DG VR+WSL+ +F++   Q+   LY H+F  HT+ +TD
Sbjct: 120 HYRSVTCLVFSGDDSLLISGSQDGSVRVWSLIRLFDDFPRQQGKTLYEHNFNEHTMSVTD 179

Query: 181 IVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDG 240
           IVI YGG +A I+SASEDRTCKVWSL +G+LL+NI+FPS I+A+ALDP  +VFYAG RDG
Sbjct: 180 IVIDYGGCNAMIISASEDRTCKVWSLSRGKLLKNIIFPSAINALALDPGGYVFYAGGRDG 239

Query: 241 SIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPIT 299
            IYI A+NA    TS YG  ++GS+S+ SKAVTCLAY T G+LLISGSE+G+V VWDP +
Sbjct: 240 KIYIGAINA----TSEYGTQVLGSVSEQSKAVTCLAYCTEGNLLISGSEEGVVCVWDPKS 295

Query: 300 HNIVRMFRLAKG---PVNNILVVRRPLYLNLGSFSNPHTSS-RRHGSQLPPPLDKYVTSA 355
              VR     KG   PVNNI +VR+ +  N    SN   SS +R GS +PPPL+KY  S 
Sbjct: 296 RRPVRTLGRGKGKGPPVNNIQIVRKTIVDN----SNKTQSSWKRRGSLMPPPLEKYERSG 351

Query: 356 DEDVDKKGVIRLPSLYNAPRDASYISHRTIENHIKELQ 393
           ++ +D    +  P   + P  +S++S   I+  ++ELQ
Sbjct: 352 EDTMDGIVTVDPPPFSDVPVYSSFLSADLIDEQVRELQ 389

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15229101|ref|NP_190487.1| root initiation defective 3 protein [Arabidopsis thaliana] gi|6723388|emb|CAB66397.1| putative protein [Arabidopsis thaliana] gi|28416679|gb|AAO42870.1| At3g49180 [Arabidopsis thaliana] gi|110735955|dbj|BAE99952.1| hypothetical protein [Arabidopsis thaliana] gi|332644987|gb|AEE78508.1| root initiation defective 3 protein [Arabidopsis thaliana]

 Score =  444 bits (1143), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 217/398 (54%), Positives = 288/398 (72%), Gaps = 14/398 (3%)

Query: 1   MELLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASS 60
           ME+ + +SS  D GIG WDL++G EQL++K CASP HGL  VG++FLASSQL  +   +S
Sbjct: 1   MEITVIASSSIDEGIGSWDLKTGTEQLQFKPCASPAHGLTAVGEKFLASSQLSAR--NTS 58

Query: 61  GSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHA 120
           GSI YWSW+KPQ EVKS P EPIK +AAN+ GTY+ GGG SGDIY+WEVA+G+LLKKWH 
Sbjct: 59  GSIFYWSWTKPQAEVKSYPVEPIKALAANNEGTYLVGGGISGDIYLWEVATGKLLKKWHG 118

Query: 121 HYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITD 180
           HYR+VTCLVFS D S L+SGS+DG +R+WSL+ +F++ + Q+ + LY H+F  HT+ +TD
Sbjct: 119 HYRSVTCLVFSGDDSLLVSGSQDGSIRVWSLIRLFDDFQRQQGNTLYEHNFNEHTMSVTD 178

Query: 181 IVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDG 240
           IVI YGG +A I+S+SEDRTCKVWSL +G+LL+NI+FPSVI+A+ALDP   VFYAG+RD 
Sbjct: 179 IVIDYGGCNAVIISSSEDRTCKVWSLSRGKLLKNIIFPSVINALALDPGGCVFYAGARDS 238

Query: 241 SIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAY-STGDLLISGSEDGMVRVWDPIT 299
            IYI A+NA    TS YG  ++GS+S+  KA+TCLAY + G+LLISGSEDG+V VWDP +
Sbjct: 239 KIYIGAINA----TSEYGTQVLGSVSEKGKAITCLAYCADGNLLISGSEDGVVCVWDPKS 294

Query: 300 HNIVRMFRLA----KGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGSQLPPPLDKYVTSA 355
              VR    A    KGPVNNI +VR+ +  N    +    S +  G+ +PPPL+KY    
Sbjct: 295 LRHVRTLIHAKGSRKGPVNNIQIVRKTIVAN---SNKTQVSWKSRGALIPPPLEKYERPV 351

Query: 356 DEDVDKKGVIRLPSLYNAPRDASYISHRTIENHIKELQ 393
           ++ +D    +  P   + P  +S++S   I+  +KELQ
Sbjct: 352 EDTMDGIVTVDPPPFSDVPVYSSFLSADLIDEQVKELQ 389

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21592898|gb|AAM64848.1| unknown [Arabidopsis thaliana]

 Score =  444 bits (1143), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 217/398 (54%), Positives = 288/398 (72%), Gaps = 14/398 (3%)

Query: 1   MELLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASS 60
           ME+ + +SS  D GIG WDL++G EQL++K CASP HGL  VG++FLASSQL  +   +S
Sbjct: 1   MEITVIASSSIDEGIGSWDLKTGTEQLQFKPCASPAHGLTAVGEKFLASSQLSAR--NTS 58

Query: 61  GSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHA 120
           GSI YWSW+KPQ EVKS P EPIK +AAN+ GTY+ GGG SGDIY+WEVA+G+LLKKWH 
Sbjct: 59  GSIFYWSWTKPQAEVKSYPVEPIKALAANNEGTYLVGGGISGDIYLWEVATGKLLKKWHG 118

Query: 121 HYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITD 180
           HYR+VTCLVFS D S L+SGS+DG +R+WSL+ +F++ + Q+ + LY H+F  HT+ +TD
Sbjct: 119 HYRSVTCLVFSGDDSLLVSGSQDGSIRVWSLIRLFDDFQRQQGNTLYEHNFNEHTMSVTD 178

Query: 181 IVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDG 240
           IVI YGG +A I+S+SEDRTCKVWSL +G+LL+NI+FPSVI+A+ALDP   VFYAG+RD 
Sbjct: 179 IVIDYGGCNAVIISSSEDRTCKVWSLSRGKLLKNIIFPSVINALALDPGGCVFYAGARDS 238

Query: 241 SIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAY-STGDLLISGSEDGMVRVWDPIT 299
            IYI A+NA    TS YG  ++GS+S+  KA+TCLAY + G+LLISGSEDG+V VWDP +
Sbjct: 239 KIYIGAINA----TSEYGTQVLGSVSEKGKAITCLAYCADGNLLISGSEDGVVCVWDPKS 294

Query: 300 HNIVRMFRLAKG----PVNNILVVRRPLYLNLGSFSNPHTSSRRHGSQLPPPLDKYVTSA 355
              VR    AKG    PVNNI +VR+ +  N    +    S +  G+ +PPPL+KY    
Sbjct: 295 LRHVRTLIHAKGSRKCPVNNIQIVRKTIVAN---SNKTQVSWKSRGALIPPPLEKYERPV 351

Query: 356 DEDVDKKGVIRLPSLYNAPRDASYISHRTIENHIKELQ 393
           ++ +D    +  P   + P  +S++S   I+  +KELQ
Sbjct: 352 EDTMDGIVTVDPPPFSDVPVYSSFLSADLIDEQVKELQ 389

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	424
TAIR|locus:2082891	438	RID3 "AT3G49180" [Arabidopsis	0.905	0.876	0.545	3.5e-114
DICTYBASE|DDB_G0288659	560	wdr18 "WD40 repeat-containing	0.561	0.425	0.345	1.1e-50
UNIPROTKB|Q3SZD4	432	WDR18 "WD repeat-containing pr	0.841	0.826	0.331	3.5e-43
RGD|1310646	431	Wdr18 "WD repeat domain 18" [R	0.846	0.832	0.328	3.5e-43
UNIPROTKB|Q9BV38	432	WDR18 "WD repeat-containing pr	0.851	0.835	0.324	5.2e-42
MGI|MGI:2158400	431	Wdr18 "WD repeat domain 18" [M	0.844	0.830	0.317	1.7e-41
ZFIN|ZDB-GENE-040905-4	431	wdr18 "WD repeat domain 18" [D	0.787	0.774	0.288	2.2e-34
POMBASE|SPAC13G7.08c	446	crb3 "WD repeat protein Crb3"	0.575	0.547	0.286	5.5e-29
ASPGD|ASPL0000074691	573	AN4771 [Emericella nidulans (t	0.540	0.399	0.303	3.1e-22
UNIPROTKB|G5EGX7	462	MGCH7_ch7g852 "WD repeat-conta	0.469	0.430	0.295	2.6e-16

TAIR|locus:2082891 RID3 "AT3G49180" [Arabidopsis thaliana (taxid:3702)]

 Score = 1126 (401.4 bits), Expect = 3.5e-114, P = 3.5e-114
 Identities = 217/398 (54%), Positives = 288/398 (72%)

Query:     1 MELLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASS 60
             ME+ + +SS  D GIG WDL++G EQL++K CASP HGL  VG++FLASSQL  + +  S
Sbjct:     1 MEITVIASSSIDEGIGSWDLKTGTEQLQFKPCASPAHGLTAVGEKFLASSQLSARNT--S 58

Query:    61 GSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHA 120
             GSI YWSW+KPQ EVKS P EPIK +AAN+ GTY+ GGG SGDIY+WEVA+G+LLKKWH 
Sbjct:    59 GSIFYWSWTKPQAEVKSYPVEPIKALAANNEGTYLVGGGISGDIYLWEVATGKLLKKWHG 118

Query:   121 HYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITD 180
             HYR+VTCLVFS D S L+SGS+DG +R+WSL+ +F++ + Q+ + LY H+F  HT+ +TD
Sbjct:   119 HYRSVTCLVFSGDDSLLVSGSQDGSIRVWSLIRLFDDFQRQQGNTLYEHNFNEHTMSVTD 178

Query:   181 IVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDG 240
             IVI YGG +A I+S+SEDRTCKVWSL +G+LL+NI+FPSVI+A+ALDP   VFYAG+RD 
Sbjct:   179 IVIDYGGCNAVIISSSEDRTCKVWSLSRGKLLKNIIFPSVINALALDPGGCVFYAGARDS 238

Query:   241 SIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAY-STGDLLISGSEDGMVRVWDPIT 299
              IYI A+NA    TS YG  ++GS+S+  KA+TCLAY + G+LLISGSEDG+V VWDP +
Sbjct:   239 KIYIGAINA----TSEYGTQVLGSVSEKGKAITCLAYCADGNLLISGSEDGVVCVWDPKS 294

Query:   300 HNIVRMFRLAKG----PVNNILVVRRPLYLNLGSFSNPHTSSRRHGSQLPPPLDKYVTSA 355
                VR    AKG    PVNNI +VR+ +  N    +    S +  G+ +PPPL+KY    
Sbjct:   295 LRHVRTLIHAKGSRKGPVNNIQIVRKTIVANS---NKTQVSWKSRGALIPPPLEKYERPV 351

Query:   356 DEDVDKKGVIRLPSLYNAPRDASYISHRTIENHIKELQ 393
             ++ +D    +  P   + P  +S++S   I+  +KELQ
Sbjct:   352 EDTMDGIVTVDPPPFSDVPVYSSFLSADLIDEQVKELQ 389

GO:0000166 "nucleotide binding" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0005834 "heterotrimeric G-protein complex" evidence=ISS

GO:0008150 "biological_process" evidence=ND

GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=ISS

DICTYBASE|DDB_G0288659 wdr18 "WD40 repeat-containing protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 423 (154.0 bits), Expect = 1.1e-50, Sum P(2) = 1.1e-50
 Identities = 87/252 (34%), Positives = 141/252 (55%)

Query:     4 LIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSI 63
             +IA +S  D+ +  +DL +G     + +  +  +G   +G  + A+SQ      A+   I
Sbjct:    42 VIAITSKEDSSLFIYDLRNGNLIATFNNTNNDTNGFCTIGSEYFATSQ------ANKAMI 95

Query:    64 LYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYR 123
               ++W K Q   K+   E   PI  +S G Y+  G  SG +Y+WEV++G LL+ W AHY 
Sbjct:    96 NIYNWKKDQPIYKTPIQEKSGPICCSSDGNYLVMGSASGMVYLWEVSTGTLLRMWEAHYN 155

Query:   124 AVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYL-HSFTGHTLRITDIV 182
              ++C+ F++D  ++I+  +DG +  WS    FE+C  +  S L   +SF+ H+L IT IV
Sbjct:   156 KISCITFTKDDFYIITAGDDGIINCWS----FEQCLDRDVSLLRARNSFSDHSLGITSIV 211

Query:   183 IGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSI 242
               +GG ++ + S S DRTCK+W L+ GR + +I+FP+ + ++ LD  E   Y G  DG I
Sbjct:   212 CSFGGCNSRLFSVSLDRTCKIWDLVTGRCINSIIFPTYLTSVCLDSTETTCYVGGGDGII 271

Query:   243 Y---IAALNAES 251
             Y   +  LN +S
Sbjct:   272 YQTDLIQLNPQS 283

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

UNIPROTKB|Q3SZD4 WDR18 "WD repeat-containing protein 18" [Bos taurus (taxid:9913)]

 Score = 456 (165.6 bits), Expect = 3.5e-43, P = 3.5e-43
 Identities = 130/392 (33%), Positives = 197/392 (50%)

Query:     1 MELLIASSSVADTGIGC--WDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSA 58
             ME+ + + S A     C  W+L SGA  L Y+   + P GLA +   +L ++QL      
Sbjct:     5 MEVAVCTDSAAQLW-SCVVWELHSGANLLTYRGGQAGPRGLALLNGEYLLAAQL------ 57

Query:    59 SSGSILYWSWS-KPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKK 117
                 I  W    K Q++ K +   P+  +  + +G Y+  G  S +IY+WEV++G LL  
Sbjct:    58 GKNYICAWELQRKDQLQQKIMCPGPVTCLTTSPNGLYVLAG-ISENIYLWEVSTGNLLVI 116

Query:   118 WHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLR 177
                HY+ V+CL F+ D S  ISG +D  V  WSL +V +   S+  +    H ++ HTL 
Sbjct:   117 LSRHYQDVSCLQFTGDSSHFISGGKDCLVLAWSLCSVLQADPSRTPAPR--HVWSRHTLP 174

Query:   178 ITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGS 237
             ITD+  G+GG  A + +AS D+T K+W +  G LL +++F   I A+ +D AEH  + G 
Sbjct:   175 ITDLHCGFGGPLARVATASLDQTVKLWEVSSGELLLSVLFDVGILAVTMDLAEHYMFCGG 234

Query:   238 RDGSIYIAAL----NAESPSTSSYGMHIIGSL-SDHSKAVTCLAYST-GDLLISGSEDGM 291
              DGSI+   L         S      H  G +   H   VTCL+ ST G +L+SGS D  
Sbjct:   235 SDGSIFQVDLCTWPGQREKSFQPEQEH--GKVFRGHRNQVTCLSVSTDGSVLLSGSHDET 292

Query:   292 VRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGSQLPPPLDKY 351
             VR+WD  +   +R   L KGPV N  ++  P+ +    F        R G  LP   +K+
Sbjct:   293 VRLWDVQSQQCLRTVTL-KGPVTNACIMLAPVSMLSSDF--------RPGLPLPH-FNKH 342

Query:   352 VTSADE-DVDKKG--VIRLPSLYNAPRDASYI 380
             +  A+  D   +G  ++RL  L+    + SY+
Sbjct:   343 LLGAEHGDEPHRGGLMLRL-GLHQQGSEPSYL 373

GO:0005737 "cytoplasm" evidence=IEA

GO:0005654 "nucleoplasm" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=IEA

RGD|1310646 Wdr18 "WD repeat domain 18" [Rattus norvegicus (taxid:10116)]

 Score = 456 (165.6 bits), Expect = 3.5e-43, P = 3.5e-43
 Identities = 128/390 (32%), Positives = 196/390 (50%)

Query:     1 MELLIASSSVADTGIGC--WDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSA 58
             ME+++ + S A     C  W+L SGA  L Y+   + P GLA +   +L ++Q       
Sbjct:     5 MEVVVCTDSAAPLW-SCMVWELHSGANLLTYRGGQAGPRGLALLNGEYLLAAQ------Q 57

Query:    59 SSGSILYWSWS-KPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKK 117
                 I  W    K Q++ K +   P+  +    +G Y+  G  +  IY+WEV++G LL  
Sbjct:    58 GKNYICAWELQRKDQLQQKIMCPGPVTCLTTAPNGLYVLAG-IAESIYLWEVSTGNLLVI 116

Query:   118 WHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLR 177
                HY+ V+CL F+ DGS  +S  +D  V  WSL +V +   S+  +    H ++ HTL 
Sbjct:   117 LSRHYQDVSCLKFTGDGSHFVSAGKDCLVLAWSLCSVLQADPSRILAPR--HVWSQHTLP 174

Query:   178 ITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGS 237
             ITD+  G+GG  A + +AS D+T K+W++  G LL +++F   I ++ +D AEH  + G 
Sbjct:   175 ITDLHCGFGGPMARVATASLDQTMKLWAISSGDLLLSVLFDMGITSVTMDLAEHYIFCGG 234

Query:   238 RDGSIYIAAL-NAESPSTSSYGMHI-IGSL-SDHSKAVTCLAYST-GDLLISGSEDGMVR 293
              DGSI+   L +   P   S+      G +   H   VTCL+ ST G +L+SGS D  VR
Sbjct:   235 SDGSIFQVDLCSRPGPREQSFQPEQNTGKVFKGHRNQVTCLSVSTDGSILLSGSHDESVR 294

Query:   294 VWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGSQLP-PPLDKYV 352
             +WD  +   VR   L KGPV N  +   P      S  NP          LP P  +K++
Sbjct:   295 LWDVKSKQCVRTVPL-KGPVTNAAITLAP-----PSMLNPEFRP-----SLPLPHFNKHL 343

Query:   353 TSADE-DVDKKGVIRLP-SLYNAPRDASYI 380
               A+  D  + G +RL   L+   ++ SY+
Sbjct:   344 LGAEHGDEAQGGGLRLQLGLHLQGKEPSYL 373

GO:0005654 "nucleoplasm" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=IEA

UNIPROTKB|Q9BV38 WDR18 "WD repeat-containing protein 18" [Homo sapiens (taxid:9606)]

 Score = 445 (161.7 bits), Expect = 5.2e-42, P = 5.2e-42
 Identities = 128/395 (32%), Positives = 198/395 (50%)

Query:     1 MELLIASSSVADTGIGC--WDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSA 58
             ME+ + + S A     C  W+L SGA  L Y+   + P GLA +   +L ++QL      
Sbjct:     5 MEVAVCTDSAAPMW-SCIVWELHSGANLLTYRGGQAGPRGLALLNGEYLLAAQL------ 57

Query:    59 SSGSILYWSWS-KPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKK 117
                 I  W    K Q++ K +   P+  + A+ +G Y+  G  +  I++WEV++G LL  
Sbjct:    58 GKNYISAWELQRKDQLQQKIMCPGPVTCLTASPNGLYVLAG-VAESIHLWEVSTGNLLVI 116

Query:   118 WHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLR 177
                HY+ V+CL F+ D S  ISG +D  V +WSL +V +   S+  +    H ++ H L 
Sbjct:   117 LSRHYQDVSCLQFTGDSSHFISGGKDCLVLVWSLCSVLQADPSRIPAPR--HVWSHHALP 174

Query:   178 ITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGS 237
             ITD+  G+GG  A + ++S D+T K+W +  G LL +++F   I A+ +D AEH  + G 
Sbjct:   175 ITDLHCGFGGPLARVATSSLDQTVKLWEVSSGELLLSVLFDVSIMAVTMDLAEHHMFCGG 234

Query:   238 RDGSIYIAALNAESPSTSSYGMHI---IGSL-SDHSKAVTCLAYST-GDLLISGSEDGMV 292
              +GSI+   L    P       H     G +   H   VTCL+ ST G +L+SGS D  V
Sbjct:   235 SEGSIFQVDLFTW-PGQRERSFHPEQDAGKVFKGHRNQVTCLSVSTDGSVLLSGSHDETV 293

Query:   293 RVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGSQLP-PPLDKY 351
             R+WD  +   +R   L KGPV N  ++  P+ + L S   P          LP P  +K+
Sbjct:   294 RLWDVQSKQCIRTVAL-KGPVTNAAILLAPVSM-LSSDFRP---------SLPLPHFNKH 342

Query:   352 VTSADE-DVDKKGVIRLP-SLYNAPRDASYISHRT 384
             +  A+  D  + G + L   L+    + SY+  RT
Sbjct:   343 LLGAEHGDEPRHGGLTLRLGLHQQGSEPSYLD-RT 376

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0005654 "nucleoplasm" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

MGI|MGI:2158400 Wdr18 "WD repeat domain 18" [Mus musculus (taxid:10090)]

 Score = 440 (159.9 bits), Expect = 1.7e-41, P = 1.7e-41
 Identities = 124/391 (31%), Positives = 193/391 (49%)

Query:     1 MELLIASSSVADTGIGC--WDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSA 58
             ME+++ + + A     C  W+L SGA  L Y+   + P GLA +   +L ++Q       
Sbjct:     5 MEVVVCTDAAAQLW-SCVVWELHSGANLLTYRGGQAGPRGLALLNGEYLLAAQ------Q 57

Query:    59 SSGSILYWSWS-KPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKK 117
                 I  W    K Q++ K +   P+  +    +G Y+  G  +  IY+WEV +G LL  
Sbjct:    58 GKNYICAWELQRKDQLQQKIMCPGPVTCLTTAPNGLYVLAG-IAESIYLWEVCTGNLLVI 116

Query:   118 WHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLR 177
                HY+ V+CL F+ DGS  +S  +D     WSL +V +   S+  +    H ++ HTL 
Sbjct:   117 LSRHYQDVSCLKFTGDGSHFVSAGKDCLALAWSLCSVLQADPSRILAPR--HVWSQHTLP 174

Query:   178 ITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGS 237
             ITD+  G+GG  A + +AS D+T K+W++  G LL +++F   I ++ +D AEH  + G 
Sbjct:   175 ITDLHCGFGGPMARVATASLDQTVKLWAISSGDLLLSVLFDMGITSVTMDLAEHHIFCGG 234

Query:   238 RDGSIYIAALNAESPSTSSYGMHI---IGSL-SDHSKAVTCLAYST-GDLLISGSEDGMV 292
              DGSI+   L    P    +        G +   H   VTCL+ ST G +L+SGS D  V
Sbjct:   235 SDGSIFQVDL-CSWPGLREHSFQPEQNTGKVFKGHRNQVTCLSVSTDGSVLLSGSHDESV 293

Query:   293 RVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGSQLP-PPLDKY 351
             R+WD  +   +R   L KGPV N  ++  P      S  NP          LP P  +K+
Sbjct:   294 RLWDVKSKQCLRTVTL-KGPVTNAAIILAP-----PSMLNPEFRP-----SLPLPHFNKH 342

Query:   352 VTSADE-DVDKKGVIRLP-SLYNAPRDASYI 380
             +  A+  D  + G +RL   L+   ++ SY+
Sbjct:   343 LLGAEHGDEAQGGGLRLQLGLHLQGKEPSYL 373

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0008150 "biological_process" evidence=ND

ZFIN|ZDB-GENE-040905-4 wdr18 "WD repeat domain 18" [Danio rerio (taxid:7955)]

 Score = 373 (136.4 bits), Expect = 2.2e-34, P = 2.2e-34
 Identities = 102/353 (28%), Positives = 172/353 (48%)

Query:     1 MELLIASSSVADTGIGC--WDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSA 58
             +E+++++ S       C  +D  +G+E L Y+   +    L  +   ++  +QL      
Sbjct:     5 VEVVLSADSAGQL-FNCAVYDPHTGSEFLSYRGGNTSSRSLTILNGEYILGAQL------ 57

Query:    59 SSGSILYWSWS-KPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKK 117
                 I  W    K Q++ K +    +  + A+  G Y+  G     IY+WEV++G LL  
Sbjct:    58 GKNYINVWEIQRKDQLQQKIVCPGIVTCLCASPDGLYVLAGIAEA-IYLWEVSTGNLLAI 116

Query:   118 WHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLR 177
                H++ ++C+ F++D S  +SG +D    IW+L +V +  +S R      H  + H+L 
Sbjct:   117 LSRHFQDLSCIKFTDDSSHFVSGGKDNLAFIWNLSSVVQ-LDSSRTPEPR-HILSRHSLP 174

Query:   178 ITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGS 237
             ITDI  G  G  A + +AS D+T KVW +  G +L +++F   I ++  DP E+  + G 
Sbjct:   175 ITDIHCGLMGPQARVATASLDQTVKVWEISSGEMLLSVLFDVGIMSVTFDPCEYFLFCGG 234

Query:   238 RDGSIYIAALNAESPSTS-SYGMHIIGS--LSDHSKAVTCLAYST-GDLLISGSEDGMVR 293
              DG+I+  +L + S S   ++     G+     H   VTCL+ S  G +L+SGS D  VR
Sbjct:   235 SDGNIFQVSLCSTSLSRDKTFQSDSEGNQVFKGHRNLVTCLSVSMDGTVLLSGSNDETVR 294

Query:   294 VWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGSQLPP 346
             +WD  +   +      +GPV N  ++  P  + L S S+P     R    L P
Sbjct:   295 MWDVQSKQCIWTIN-HRGPVTNAAIIPAPANMFL-SDSHPAVPLPRFSRHLNP 345

GO:0070121 "Kupffer's vesicle development" evidence=IMP

GO:0007368 "determination of left/right symmetry" evidence=IGI;IMP

GO:0007275 "multicellular organismal development" evidence=IEA

POMBASE|SPAC13G7.08c crb3 "WD repeat protein Crb3" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 293 (108.2 bits), Expect = 5.5e-29, Sum P(2) = 5.5e-29
 Identities = 74/258 (28%), Positives = 128/258 (49%)

Query:     1 MELLIASSSVAD---TGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPS 57
             MELL++     +   + + C +L +G     ++  +SP     C     L S+Q   +P 
Sbjct:     1 MELLLSGCEAIEGEPSNVLCHNLHTGTLVSTFRQ-SSPAKNATCTTLNHLLSAQ-HTRPQ 58

Query:    58 ASSGSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKK 117
              +       ++ K  ++   +  E +  + ++  G+++A G + G++Y+W + SG L+  
Sbjct:    59 LN-----IHNFGKEILDQSIILPEILICVQSSPCGSWLAAGTEKGNLYIWSLKSGALIYF 113

Query:   118 WHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEE---CESQRASHLYLHSFTGH 174
             + AHY+ +T L FS DG  L + S DG V  W + T+ ++    E+  +S   +  F+GH
Sbjct:   114 FRAHYQPLTILKFSNDGMVLFTASNDGDVFAWLISTLVDQNSTFETSNSSVKAISHFSGH 173

Query:   175 TLRITDIVIGYGG-VSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVF 233
                I  + IG G  VS  + +ASED T ++W +  G LL  I  PS    + +DP+E V 
Sbjct:   174 KRSIVSMEIGPGPIVSGRLYTASEDNTIRIWDVSTGNLLTTIALPSTPSCMTVDPSERVV 233

Query:   234 YAGSRDGSIYIAALNAES 251
             Y G+  G I+I      S
Sbjct:   234 YVGNEKGIIWIPLYTGSS 251

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISO;IDA

GO:0005720 "nuclear heterochromatin" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0006364 "rRNA processing" evidence=ISO

GO:0030702 "chromatin silencing at centromere" evidence=IMP

GO:0032153 "cell division site" evidence=IDA

GO:0044732 "mitotic spindle pole body" evidence=IDA

GO:0097344 "Rix1 complex" evidence=IDA

ASPGD|ASPL0000074691 AN4771 [Emericella nidulans (taxid:162425)]

 Score = 281 (104.0 bits), Expect = 3.1e-22, P = 3.1e-22
 Identities = 75/247 (30%), Positives = 127/247 (51%)

Query:     6 ASSSVADTGIGCWDLE-SGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSIL 64
             AS+S+ D GI   +L+ S   +  +K  ++ P+ LA       A+        A   ++ 
Sbjct:    18 ASASLRDVGICLHELQPSPTLRSTFKKSSTSPNCLAVSASHVFAAQ-------AEKATVH 70

Query:    65 YWSWSKPQVEVKSLP-AEPIKPIAA--NSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAH 121
              +S  K   E  ++P  E I+ IA   + +G  +  G + G + +WEV +GR +    +H
Sbjct:    71 VYSREKGNQEA-TVPFPERIRSIAVAGSKNGDIVVLGTEGGRLILWEVCTGRQVATTASH 129

Query:   122 YRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTV--FEECES---QRASHLYLHSFTGHTL 176
              R VT +V     +F++SGS D  V +WSL+ +  F +  S   Q+  +  + +F+ H  
Sbjct:   130 LRPVTSVVVDPSSNFILSGSSDASVHVWSLVDLLSFTKPPSGRNQQPPNSPIRTFSNHRA 189

Query:   177 RITDIVIGYG-GVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYA 235
              ++ IV+G+  G     +SA++D T  VW    G +LRN + P+   ++ALDP +  FYA
Sbjct:   190 AVSAIVVGHSTGRYNIAISAAQDNTAIVWDYRTGHVLRNFLLPASAISLALDPVDRAFYA 249

Query:   236 GSRDGSI 242
             G  DGS+
Sbjct:   250 GYEDGSV 256

GO:0000027 "ribosomal large subunit assembly" evidence=IEA

GO:0006364 "rRNA processing" evidence=IEA

GO:0030702 "chromatin silencing at centromere" evidence=IEA

GO:0005654 "nucleoplasm" evidence=IEA

GO:0044732 "mitotic spindle pole body" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0097344 "Rix1 complex" evidence=IEA

GO:0032153 "cell division site" evidence=IEA

GO:0005720 "nuclear heterochromatin" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

UNIPROTKB|G5EGX7 MGCH7_ch7g852 "WD repeat-containing protein" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 228 (85.3 bits), Expect = 2.6e-16, P = 2.6e-16
 Identities = 66/223 (29%), Positives = 104/223 (46%)

Query:    92 GTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSL 151
             G  +  G   G I +WE  +GRL+     H + VTCL  +     ++SGS+D  V +WSL
Sbjct:    96 GDVLILGTAEGRIMLWEFCTGRLVSTPACHVQPVTCLAVTPHS--VLSGSDDSNVHVWSL 153

Query:   152 LTVFE-ECESQRASHLYLHSFTGHTLRITDIVI------GYGGVSATI-VSASEDRTCKV 203
               + E +  +++A      + + H   IT +        G G   +T+ VSAS+D+TC V
Sbjct:   154 AQLLELDIVAEQAPE---RTLSNHRAAITALAASSGADGGSGATDSTLCVSASKDKTCVV 210

Query:   204 WSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAE----SPSTSSYGM 259
             W+   G  LR ++FP+    ++LDP        + DGS+Y+  L  E     P  +    
Sbjct:   211 WNYRTGLPLRTLLFPASPLCLSLDPCTRALTLAADDGSVYLVELFGEPALLGPHAAEAAS 270

Query:   260 HIIGSLSDHSKA------VTCLAYS-TGDLLISGSEDGMVRVW 295
              ++   S    A       +CLA S  G +L+SG   G +  W
Sbjct:   271 TVVQVTSPFGMAPPEAGPASCLATSYDGTVLLSGHAKGKILQW 313

GO:0003674 "molecular_function" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q3SZD4	WDR18_BOVIN	No assigned EC number	0.3188	0.8419	0.8263	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	estExt_fgenesh4_pg.C_400304	hypothetical protein (446 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	fgenesh4_pg.C_LG_XVII000484	hypothetical protein (433 aa)			•	•					0.552
	estExt_Genewise1_v1.C_LG_XIV0120	hypothetical protein (258 aa)			•						0.504
	gw1.XVII.684.1	hypothetical protein (328 aa)			•						0.503
	gw1.57.252.1	hypothetical protein (307 aa)			•						0.503
	gw1.VIII.402.1	hypothetical protein (356 aa)			•						0.501
	eugene3.00140830	hypothetical protein (166 aa)			•						0.501
	estExt_fgenesh4_pm.C_LG_II0262	hypothetical protein (580 aa)			•						0.501
	estExt_Genewise1_v1.C_LG_I2543	hypothetical protein (329 aa)			•						0.500
	estExt_Genewise1_v1.C_LG_X6506	hypothetical protein (370 aa)			•						0.499
	gw1.XII.1531.1	hypothetical protein (314 aa)			•	•					0.495

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	424
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	7e-36
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	2e-30
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	2e-27
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	7e-27
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	1e-22
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	5e-16
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	7e-09
smart00320	40	smart00320, WD40, WD40 repeats	1e-08
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	4e-08
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	4e-07
smart00320	40	smart00320, WD40, WD40 repeats	9e-07
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	1e-06
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	9e-06

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  133 bits (336), Expect = 7e-36
 Identities = 81/298 (27%), Positives = 136/298 (45%), Gaps = 36/298 (12%)

Query: 4   LIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQ-RFLASSQLREQPSASSGS 62
           L+A+ S  D  I  WDLE+G      K    P   +A      +LAS        +S  +
Sbjct: 23  LLATGS-GDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASG-------SSDKT 74

Query: 63  ILYWSWSKPQVEVKSLP--AEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHA 120
           I  W     +  V++L      +  +A +  G  ++   +   I +W+V +G+ L     
Sbjct: 75  IRLWDLETGEC-VRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRG 133

Query: 121 HYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITD 180
           H   V  + FS DG+F+ S S+DG +++W L            +   + + TGHT  +  
Sbjct: 134 HTDWVNSVAFSPDGTFVASSSQDGTIKLWDL-----------RTGKCVATLTGHTGEVNS 182

Query: 181 IVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYAGSRD 239
           +     G    ++S+S D T K+W L  G+ L  +    + ++++A  P  ++  +GS D
Sbjct: 183 VAFSPDG--EKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSED 240

Query: 240 GSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYS-TGDLLISGSEDGMVRVWD 296
           G+I +  L              + +LS H+ +VT LA+S  G  L SGS DG +R+WD
Sbjct: 241 GTIRVWDLRTGEC---------VQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  118 bits (298), Expect = 2e-30
 Identities = 68/263 (25%), Positives = 118/263 (44%), Gaps = 25/263 (9%)

Query: 57  SASSGSILYWSWSKPQVE-VKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLL 115
            +  G+I  W     ++         P++ +AA++ GTY+A G     I +W++ +G  +
Sbjct: 27  GSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECV 86

Query: 116 KKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHT 175
           +    H   V+ + FS DG  L S S D  +++W + T   +C         L +  GHT
Sbjct: 87  RTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVET--GKC---------LTTLRGHT 135

Query: 176 LRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFP-SVIDAIALDPAEHVFY 234
             +  +   +      + S+S+D T K+W L  G+ +  +      ++++A  P      
Sbjct: 136 DWVNSVA--FSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLL 193

Query: 235 AGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYS-TGDLLISGSEDGMVR 293
           + S DG+I +  L+             +G+L  H   V  +A+S  G LL SGSEDG +R
Sbjct: 194 SSSSDGTIKLWDLSTGKC---------LGTLRGHENGVNSVAFSPDGYLLASGSEDGTIR 244

Query: 294 VWDPITHNIVRMFRLAKGPVNNI 316
           VWD  T   V+        V ++
Sbjct: 245 VWDLRTGECVQTLSGHTNSVTSL 267

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  110 bits (276), Expect = 2e-27
 Identities = 53/194 (27%), Positives = 86/194 (44%), Gaps = 24/194 (12%)

Query: 125 VTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIG 184
           VTC+ FS DG  L +GS DG +++W L T              L +  GHT  + D+   
Sbjct: 12  VTCVAFSPDGKLLATGSGDGTIKVWDLETG-----------ELLRTLKGHTGPVRDVA-- 58

Query: 185 YGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYAGSRDGSIY 243
                  + S S D+T ++W L  G  +R +    S + ++A  P   +  + SRD +I 
Sbjct: 59  ASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIK 118

Query: 244 IAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYS-TGDLLISGSEDGMVRVWDPITHNI 302
           +  +      T         +L  H+  V  +A+S  G  + S S+DG +++WD  T   
Sbjct: 119 VWDVETGKCLT---------TLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKC 169

Query: 303 VRMFRLAKGPVNNI 316
           V       G VN++
Sbjct: 170 VATLTGHTGEVNSV 183

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  108 bits (272), Expect = 7e-27
 Identities = 64/238 (26%), Positives = 111/238 (46%), Gaps = 30/238 (12%)

Query: 86  IAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGC 145
           +A +  G  +A G   G I +W++ +G LL+    H   V  +  S DG++L SGS D  
Sbjct: 15  VAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKT 74

Query: 146 VRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSAT---IVSASEDRTCK 202
           +R+W L T   EC         + + TGHT  ++ +       S     + S+S D+T K
Sbjct: 75  IRLWDLET--GEC---------VRTLTGHTSYVSSVAF-----SPDGRILSSSSRDKTIK 118

Query: 203 VWSLLKGRLLRNIVF-PSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHI 261
           VW +  G+ L  +      ++++A  P      + S+DG+I +  L              
Sbjct: 119 VWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKC--------- 169

Query: 262 IGSLSDHSKAVTCLAYS-TGDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILV 318
           + +L+ H+  V  +A+S  G+ L+S S DG +++WD  T   +   R  +  VN++  
Sbjct: 170 VATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAF 227

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 99.4 bits (246), Expect = 1e-22
 Identities = 86/303 (28%), Positives = 133/303 (43%), Gaps = 31/303 (10%)

Query: 2   ELLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLA--CVGQRFLASSQLREQPSAS 59
             L+AS S  D  I  WDL +G           P   LA    G   +AS        +S
Sbjct: 167 GKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASG-------SS 219

Query: 60  SGSILYWSWSKPQVEVKSLPAEPIKPIAANSH-GTYIAGGGQSGDIYMWEVASGR-LLKK 117
            G+I  W  S  ++   +L       +++ S  G+ +A G   G I +W++ S   LL+ 
Sbjct: 220 DGTIRLWDLSTGKLLRSTLSGHSDSVVSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRT 279

Query: 118 WHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLR 177
              H  +V  + FS DG  L SGS DG VR+W L T            L   +  GH   
Sbjct: 280 LSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETG---------KLLSSLTLKGHEGP 330

Query: 178 ITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGS 237
           ++ +     G S  +   S+D T ++W L  G+ L+ +   S + +++  P   V  +GS
Sbjct: 331 VSSLSFSPDG-SLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSNVLSVSFSPDGRVVSSGS 389

Query: 238 RDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYS-TGDLLISGSEDGMVRVWD 296
            DG++ +  L+  S         ++ +L  H+  VT L +S  G  L SGS D  +R+WD
Sbjct: 390 TDGTVRLWDLSTGS---------LLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWD 440

Query: 297 PIT 299
             T
Sbjct: 441 LKT 443

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 79.4 bits (194), Expect = 5e-16
 Identities = 82/337 (24%), Positives = 142/337 (42%), Gaps = 31/337 (9%)

Query: 2   ELLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSG 61
             ++ +SS  D  +  WDL +  + +R        H  +     F    +L    S+  G
Sbjct: 123 NSILLASSSLDGTVKLWDLSTPGKLIRT----LEGHSESVTSLAFSPDGKLLASGSSLDG 178

Query: 62  SILYWSWSKPQ-VEVKSLPAEPIKPIAANSHGT-YIAGGGQSGDIYMWEVASGRLLKKWH 119
           +I  W     + +   +   +P+  +A +  G   IA G   G I +W++++G+LL+   
Sbjct: 179 TIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTL 238

Query: 120 AHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRIT 179
           + +       FS DGS L SGS DG +R+W L          R+S   L + +GH+  + 
Sbjct: 239 SGHSDSVVSSFSPDGSLLASGSSDGTIRLWDL----------RSSSSLLRTLSGHSSSVL 288

Query: 180 DIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFP---SVIDAIALDP-AEHVFYA 235
            +   +      + S S D T ++W L  G+LL ++        + +++  P    +   
Sbjct: 289 SVA--FSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSG 346

Query: 236 GSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTGDLLISGSEDGMVRVW 295
           GS DG+I +  L    P  +  G   + S+S             G ++ SGS DG VR+W
Sbjct: 347 GSDDGTIRLWDLRTGKPLKTLEGHSNVLSVSFSPD---------GRVVSSGSTDGTVRLW 397

Query: 296 DPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSN 332
           D  T +++R        V ++        L  GS  N
Sbjct: 398 DLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDN 434

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 57.4 bits (137), Expect = 7e-09
 Identities = 50/191 (26%), Positives = 87/191 (45%), Gaps = 26/191 (13%)

Query: 121 HYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTG-HTLRIT 179
           H  ++T + FS DG  L+SGS DG +++W L                + S  G H   ++
Sbjct: 64  HEDSITSIAFSPDGELLLSGSSDGTIKLWDLDN----------GEKLIKSLEGLHDSSVS 113

Query: 180 DIVIGYGGVSATIVSASE-DRTCKVWSLLKGRLLRNIVF--PSVIDAIALDPAE-HVFYA 235
            + +     ++ ++++S  D T K+W L     L   +      + ++A  P    +   
Sbjct: 114 KLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASG 173

Query: 236 GSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST--GDLLISGSEDGMVR 293
            S DG+I +  L    P         + +L+ H+  V+ LA+S   G L+ SGS DG +R
Sbjct: 174 SSLDGTIKLWDLRTGKP---------LSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIR 224

Query: 294 VWDPITHNIVR 304
           +WD  T  ++R
Sbjct: 225 LWDLSTGKLLR 235

Length = 466

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 50.4 bits (121), Expect = 1e-08
 Identities = 19/40 (47%), Positives = 25/40 (62%)

Query: 111 SGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWS 150
           SG LLK    H   VT + FS DG +L SGS+DG +++W 
Sbjct: 1   SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 48.5 bits (116), Expect = 4e-08
 Identities = 19/39 (48%), Positives = 25/39 (64%)

Query: 112 GRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWS 150
           G+LL+    H   VT + FS DG+ L SGS+DG VR+W 
Sbjct: 1   GKLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 50.8 bits (122), Expect = 4e-07
 Identities = 25/98 (25%), Positives = 36/98 (36%), Gaps = 10/98 (10%)

Query: 218 PSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVT-CLA 276
              +  +A  P   +   GS DG+I +  L       +  G         H+  V    A
Sbjct: 9   TGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKG---------HTGPVRDVAA 59

Query: 277 YSTGDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVN 314
            + G  L SGS D  +R+WD  T   VR        V+
Sbjct: 60  SADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVS 97

Length = 289

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 45.0 bits (107), Expect = 9e-07
 Identities = 15/36 (41%), Positives = 24/36 (66%), Gaps = 1/36 (2%)

Query: 262 IGSLSDHSKAVTCLAYS-TGDLLISGSEDGMVRVWD 296
           + +L  H+  VT +A+S  G  L SGS+DG +++WD
Sbjct: 5   LKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 44.7 bits (106), Expect = 1e-06
 Identities = 19/37 (51%), Positives = 27/37 (72%), Gaps = 1/37 (2%)

Query: 261 IIGSLSDHSKAVTCLAYS-TGDLLISGSEDGMVRVWD 296
           ++ +L  H+  VT +A+S  G+LL SGS+DG VRVWD
Sbjct: 3   LLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 46.9 bits (112), Expect = 9e-06
 Identities = 22/59 (37%), Positives = 34/59 (57%), Gaps = 1/59 (1%)

Query: 262 IGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVV 319
             +L  H+  VTC+A+S  G LL +GS DG ++VWD  T  ++R  +   GPV ++   
Sbjct: 2   RRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAAS 60

Length = 289

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	424
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0284	464	consensus Polyadenylation factor I complex, subuni	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0318	603	consensus WD40 repeat stress protein/actin interac	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0296	399	consensus Angio-associated migratory cell protein	100.0
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	100.0
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0295	406	consensus WD40 repeat-containing protein [Function	100.0
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0318	603	consensus WD40 repeat stress protein/actin interac	100.0
KOG0645	312	consensus WD40 repeat protein [General function pr	100.0
KOG0646	476	consensus WD40 repeat protein [General function pr	100.0
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0293	519	consensus WD40 repeat-containing protein [Function	100.0
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	100.0
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	100.0
KOG0295	406	consensus WD40 repeat-containing protein [Function	100.0
KOG0266	456	consensus WD40 repeat-containing protein [General	100.0
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	100.0
PLN00181	793	protein SPA1-RELATED; Provisional	100.0
KOG0316	307	consensus Conserved WD40 repeat-containing protein	100.0
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	100.0
KOG0645	312	consensus WD40 repeat protein [General function pr	100.0
KOG0284	464	consensus Polyadenylation factor I complex, subuni	100.0
KOG0282	503	consensus mRNA splicing factor [Function unknown]	100.0
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	100.0
KOG0296	399	consensus Angio-associated migratory cell protein	100.0
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	100.0
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0275	508	consensus Conserved WD40 repeat-containing protein	100.0
KOG0282	503	consensus mRNA splicing factor [Function unknown]	100.0
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	100.0
KOG0278	334	consensus Serine/threonine kinase receptor-associa	100.0
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	100.0
KOG0266	456	consensus WD40 repeat-containing protein [General	100.0
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	100.0
KOG0310	487	consensus Conserved WD40 repeat-containing protein	100.0
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	100.0
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	100.0
KOG0316	307	consensus Conserved WD40 repeat-containing protein	100.0
KOG0293	519	consensus WD40 repeat-containing protein [Function	100.0
KOG0643	327	consensus Translation initiation factor 3, subunit	100.0
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	100.0
KOG1539	910	consensus WD repeat protein [General function pred	100.0
PLN00181	793	protein SPA1-RELATED; Provisional	100.0
KOG0283	712	consensus WD40 repeat-containing protein [Function	100.0
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	100.0
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	100.0
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	100.0
KOG0275	508	consensus Conserved WD40 repeat-containing protein	100.0
KOG0288	459	consensus WD40 repeat protein TipD [General functi	100.0
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	100.0
KOG1407	313	consensus WD40 repeat protein [Function unknown]	100.0
KOG0973	942	consensus Histone transcription regulator HIRA, WD	100.0
KOG0294	362	consensus WD40 repeat-containing protein [Function	100.0
KOG0643	327	consensus Translation initiation factor 3, subunit	100.0
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	100.0
KOG0641	350	consensus WD40 repeat protein [General function pr	100.0
KOG0278	334	consensus Serine/threonine kinase receptor-associa	100.0
KOG0772	641	consensus Uncharacterized conserved protein, conta	100.0
KOG0647	347	consensus mRNA export protein (contains WD40 repea	100.0
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	100.0
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	100.0
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	100.0
KOG1407	313	consensus WD40 repeat protein [Function unknown]	100.0
KOG0289	506	consensus mRNA splicing factor [General function p	100.0
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	100.0
PTZ00421	493	coronin; Provisional	100.0
KOG0640	430	consensus mRNA cleavage stimulating factor complex	100.0
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	100.0
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	100.0
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	100.0
KOG1539	910	consensus WD repeat protein [General function pred	99.98
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.98
KOG0289	506	consensus mRNA splicing factor [General function p	99.98
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.98
KOG0639	705	consensus Transducin-like enhancer of split protei	99.97
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.97
PTZ00421	493	coronin; Provisional	99.97
PTZ00420	568	coronin; Provisional	99.97
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.97
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.97
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.97
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.97
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.97
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.97
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.97
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.97
PTZ00420	568	coronin; Provisional	99.97
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.97
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.97
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.97
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.97
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.97
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.97
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.97
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.96
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.96
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.96
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.96
KOG2055	514	consensus WD40 repeat protein [General function pr	99.96
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.96
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.96
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.96
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.96
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.96
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.96
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.96
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.95
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.95
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.95
KOG0267	825	consensus Microtubule severing protein katanin p80	99.95
KOG0641	350	consensus WD40 repeat protein [General function pr	99.95
KOG1274	933	consensus WD40 repeat protein [General function pr	99.95
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.95
KOG1273	405	consensus WD40 repeat protein [General function pr	99.95
KOG0639	705	consensus Transducin-like enhancer of split protei	99.95
KOG2048	691	consensus WD40 repeat protein [General function pr	99.95
KOG2048	691	consensus WD40 repeat protein [General function pr	99.94
KOG0646	476	consensus WD40 repeat protein [General function pr	99.94
KOG0267	825	consensus Microtubule severing protein katanin p80	99.94
KOG2096	420	consensus WD40 repeat protein [General function pr	99.94
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.94
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.94
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.94
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.94
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.94
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.94
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.94
KOG4328	498	consensus WD40 protein [Function unknown]	99.94
KOG1274	933	consensus WD40 repeat protein [General function pr	99.94
KOG2096	420	consensus WD40 repeat protein [General function pr	99.94
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.94
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.93
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.93
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.93
KOG1188	376	consensus WD40 repeat protein [General function pr	99.93
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.93
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.92
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.92
KOG2055	514	consensus WD40 repeat protein [General function pr	99.92
KOG1273	405	consensus WD40 repeat protein [General function pr	99.92
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.91
KOG4328	498	consensus WD40 protein [Function unknown]	99.91
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.91
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.91
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.9
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.9
COG2319	466	FOG: WD40 repeat [General function prediction only	99.9
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.9
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.9
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.89
KOG1188	376	consensus WD40 repeat protein [General function pr	99.89
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.89
COG2319	466	FOG: WD40 repeat [General function prediction only	99.88
KOG4227	609	consensus WD40 repeat protein [General function pr	99.88
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.87
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.87
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.87
KOG1963	792	consensus WD40 repeat protein [General function pr	99.87
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.87
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.87
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.87
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.87
PRK11028	330	6-phosphogluconolactonase; Provisional	99.86
KOG0649	325	consensus WD40 repeat protein [General function pr	99.85
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.85
PRK11028	330	6-phosphogluconolactonase; Provisional	99.85
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.84
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.84
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.84
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.84
KOG1963	792	consensus WD40 repeat protein [General function pr	99.84
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.83
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.83
KOG1310	758	consensus WD40 repeat protein [General function pr	99.83
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.83
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.83
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.83
KOG0649	325	consensus WD40 repeat protein [General function pr	99.83
KOG1334	559	consensus WD40 repeat protein [General function pr	99.83
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.83
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.82
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.81
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.81
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.81
KOG4227	609	consensus WD40 repeat protein [General function pr	99.8
PRK01742	429	tolB translocation protein TolB; Provisional	99.8
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.8
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.8
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.8
PRK01742	429	tolB translocation protein TolB; Provisional	99.79
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.79
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.79
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.78
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.78
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.78
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.76
KOG2321	703	consensus WD40 repeat protein [General function pr	99.76
KOG2315	566	consensus Predicted translation initiation factor	99.75
KOG1310	758	consensus WD40 repeat protein [General function pr	99.75
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.75
KOG2139	445	consensus WD40 repeat protein [General function pr	99.74
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.74
KOG1334	559	consensus WD40 repeat protein [General function pr	99.74
PRK03629	429	tolB translocation protein TolB; Provisional	99.73
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.73
PRK02889	427	tolB translocation protein TolB; Provisional	99.72
KOG2139	445	consensus WD40 repeat protein [General function pr	99.72
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.71
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.71
PRK03629	429	tolB translocation protein TolB; Provisional	99.71
PRK04922	433	tolB translocation protein TolB; Provisional	99.7
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.69
PRK05137	435	tolB translocation protein TolB; Provisional	99.68
PRK02889	427	tolB translocation protein TolB; Provisional	99.68
PRK04922	433	tolB translocation protein TolB; Provisional	99.67
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.62
PRK05137	435	tolB translocation protein TolB; Provisional	99.62
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	99.61
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.6
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.6
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	99.59
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.59
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.58
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.57
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.57
KOG2321	703	consensus WD40 repeat protein [General function pr	99.57
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.57
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.56
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.56
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.56
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.56
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.55
PRK00178	430	tolB translocation protein TolB; Provisional	99.55
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.54
PRK04792	448	tolB translocation protein TolB; Provisional	99.54
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.53
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	99.52
PRK01029	428	tolB translocation protein TolB; Provisional	99.52
PRK00178	430	tolB translocation protein TolB; Provisional	99.51
KOG4547	541	consensus WD40 repeat-containing protein [General	99.5
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.5
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.5
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	99.5
KOG1912	1062	consensus WD40 repeat protein [General function pr	99.49
PRK04792	448	tolB translocation protein TolB; Provisional	99.48
PRK01029	428	tolB translocation protein TolB; Provisional	99.47
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.47
KOG2314	698	consensus Translation initiation factor 3, subunit	99.47
KOG4547	541	consensus WD40 repeat-containing protein [General	99.47
KOG2041	1189	consensus WD40 repeat protein [General function pr	99.46
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	99.46
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	99.46
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.41
KOG4532	344	consensus WD40-like repeat containing protein [Gen	99.39
KOG2315	566	consensus Predicted translation initiation factor	99.38
KOG2314	698	consensus Translation initiation factor 3, subunit	99.37
COG4946	668	Uncharacterized protein related to the periplasmic	99.37
KOG2041	1189	consensus WD40 repeat protein [General function pr	99.37
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	99.35
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	99.34
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	99.34
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	99.32
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	99.3
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.28
COG4946	668	Uncharacterized protein related to the periplasmic	99.26
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	99.26
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.25
KOG4532	344	consensus WD40-like repeat containing protein [Gen	99.23
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	99.22
KOG1912	1062	consensus WD40 repeat protein [General function pr	99.22
KOG4714	319	consensus Nucleoporin [Nuclear structure]	99.21
KOG4714	319	consensus Nucleoporin [Nuclear structure]	99.21
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	99.2
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	99.19
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	99.19
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	99.13
PRK04043	419	tolB translocation protein TolB; Provisional	99.13
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	99.11
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	99.09
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	99.08
KOG2695	425	consensus WD40 repeat protein [General function pr	99.07
PRK04043	419	tolB translocation protein TolB; Provisional	99.06
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	99.06
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	99.06
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	99.03
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	99.03
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	99.02
KOG2695	425	consensus WD40 repeat protein [General function pr	98.99
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	98.98
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.97
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	98.96
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	98.89
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.88
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.87
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	98.86
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.85
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.84
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	98.84
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	98.83
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	98.82
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.81
PRK02888	635	nitrous-oxide reductase; Validated	98.8
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.8
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	98.79
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.72
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	98.66
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.66
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	98.65
KOG1008	783	consensus Uncharacterized conserved protein, conta	98.65
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	98.63
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	98.59
PRK02888	635	nitrous-oxide reductase; Validated	98.58
KOG3621	726	consensus WD40 repeat-containing protein [General	98.58
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.54
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	98.54
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	98.53
KOG1008	783	consensus Uncharacterized conserved protein, conta	98.51
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	98.5
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	98.49
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	98.46
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.43
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.42
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	98.42
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	98.41
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	98.41
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	98.39
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	98.36
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	98.34
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	98.31
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	98.25
KOG3621	726	consensus WD40 repeat-containing protein [General	98.25
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	98.24
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	98.22
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	98.19
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	98.18
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	98.18
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	98.17
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	98.16
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	98.14
COG3391	381	Uncharacterized conserved protein [Function unknow	98.12
COG3391	381	Uncharacterized conserved protein [Function unknow	98.11
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	98.07
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	98.03
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	97.99
KOG2395	644	consensus Protein involved in vacuole import and d	97.98
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	97.97
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	97.96
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	97.92
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	97.89
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	97.88
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	97.88
PHA02713	557	hypothetical protein; Provisional	97.86
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	97.85
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	97.83
KOG2444	238	consensus WD40 repeat protein [General function pr	97.82
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	97.79
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.77
PHA02713	557	hypothetical protein; Provisional	97.74
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	97.71
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.71
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	97.71
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	97.69
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	97.63
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	97.59
PRK13616	591	lipoprotein LpqB; Provisional	97.58
KOG2444	238	consensus WD40 repeat protein [General function pr	97.53
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	97.48
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	97.39
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	97.33
KOG2395	644	consensus Protein involved in vacuole import and d	97.31
PRK13616	591	lipoprotein LpqB; Provisional	97.28
PF14727	418	PHTB1_N: PTHB1 N-terminus	97.21
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	97.17
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	97.15
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	97.11
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	97.09
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	97.06
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	97.06
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	97.04
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	97.01
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	96.98
PHA02790	480	Kelch-like protein; Provisional	96.85
PHA03098	534	kelch-like protein; Provisional	96.82
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	96.8
PRK10115	686	protease 2; Provisional	96.8
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	96.76
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	96.74
KOG2377	657	consensus Uncharacterized conserved protein [Funct	96.74
COG5276	370	Uncharacterized conserved protein [Function unknow	96.73
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	96.66
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	96.64
PHA03098	534	kelch-like protein; Provisional	96.59
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	96.46
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	96.39
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	96.31
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	96.21
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	96.21
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	96.19
PHA02790	480	Kelch-like protein; Provisional	96.06
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	96.04
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	95.69
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	95.68
PF02333	381	Phytase: Phytase; InterPro: IPR003431 Phytase (3.1	95.6
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	95.59
PRK10115	686	protease 2; Provisional	95.45
COG5167	776	VID27 Protein involved in vacuole import and degra	95.44
PF14727	418	PHTB1_N: PTHB1 N-terminus	95.36
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	95.28
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	95.27
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	95.15
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	95.14
PRK14131	376	N-acetylneuraminic acid mutarotase; Provisional	95.13
PRK13684	334	Ycf48-like protein; Provisional	94.94
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	94.83
KOG2377	657	consensus Uncharacterized conserved protein [Funct	94.82
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	94.81
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	94.8
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	94.76
TIGR03547	346	muta_rot_YjhT mutatrotase, YjhT family. Members of	94.62
COG5276	370	Uncharacterized conserved protein [Function unknow	94.61
COG5167	776	VID27 Protein involved in vacuole import and degra	94.61
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	94.56
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	94.51
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	94.42
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	94.39
KOG1983	993	consensus Tomosyn and related SNARE-interacting pr	94.32
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	94.11
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	94.1
KOG2247	615	consensus WD40 repeat-containing protein [General	94.04
TIGR01063	800	gyrA DNA gyrase, A subunit. This model describes t	93.73
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	93.71
TIGR03548	323	mutarot_permut cyclically-permuted mutatrotase fam	93.71
COG4590	733	ABC-type uncharacterized transport system, permeas	93.53
TIGR03547	346	muta_rot_YjhT mutatrotase, YjhT family. Members of	93.46
KOG1900	1311	consensus Nuclear pore complex, Nup155 component (	93.44
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	93.41
KOG2247	615	consensus WD40 repeat-containing protein [General	93.27
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	93.1
PRK05560	805	DNA gyrase subunit A; Validated	93.1
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	93.02
COG4590	733	ABC-type uncharacterized transport system, permeas	92.96
PLN02193	470	nitrile-specifier protein	92.94
PLN02153	341	epithiospecifier protein	92.66
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	92.63
PRK14131	376	N-acetylneuraminic acid mutarotase; Provisional	92.63
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	92.21
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	92.03
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	91.8
KOG1900	1311	consensus Nuclear pore complex, Nup155 component (	91.45
PLN02153	341	epithiospecifier protein	91.38
PF08801	422	Nucleoporin_N: Nup133 N terminal like; InterPro: I	91.31
smart00036	302	CNH Domain found in NIK1-like kinases, mouse citro	91.18
COG1520	370	FOG: WD40-like repeat [Function unknown]	90.98
TIGR03548	323	mutarot_permut cyclically-permuted mutatrotase fam	90.82
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	90.74
KOG3616	1636	consensus Selective LIM binding factor [Transcript	90.41
PF12768	281	Rax2: Cortical protein marker for cell polarity	90.21
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	90.18
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	89.84
smart00036	302	CNH Domain found in NIK1-like kinases, mouse citro	89.48
PRK13684	334	Ycf48-like protein; Provisional	89.32
PLN00033	398	photosystem II stability/assembly factor; Provisio	89.17
KOG1983	993	consensus Tomosyn and related SNARE-interacting pr	89.15
PF02333	381	Phytase: Phytase; InterPro: IPR003431 Phytase (3.1	89.05
KOG4460	741	consensus Nuclear pore complex, Nup88/rNup84 compo	88.96
PF11635	753	Med16: Mediator complex subunit 16; InterPro: IPR0	88.81
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	88.78
PF12768	281	Rax2: Cortical protein marker for cell polarity	88.35
PF10433	504	MMS1_N: Mono-functional DNA-alkylating methyl meth	88.18
PF10395	670	Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an	88.05
TIGR01063	800	gyrA DNA gyrase, A subunit. This model describes t	87.08
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	86.88
PRK13613	599	lipoprotein LpqB; Provisional	86.86
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	86.56
PF11635	753	Med16: Mediator complex subunit 16; InterPro: IPR0	86.49
COG5290	1243	IkappaB kinase complex, IKAP component [Transcript	86.37
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	86.05
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	86.05
PF13449	326	Phytase-like: Esterase-like activity of phytase	85.99
COG5308	1263	NUP170 Nuclear pore complex subunit [Intracellular	85.95
KOG3522	925	consensus Predicted guanine nucleotide exchange fa	85.91
PLN02193	470	nitrile-specifier protein	85.64
KOG3616	1636	consensus Selective LIM binding factor [Transcript	85.39

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=2e-53  Score=349.99  Aligned_cols=307  Identities=21%  Similarity=0.356  Sum_probs=277.6

Q ss_pred             EEeecCCCCCceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCceee--eecCCC
Q 014475            4 LIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEV--KSLPAE   81 (424)
Q Consensus         4 ~lat~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~--~~~~~~   81 (424)
                      .||||+ .|.++|+||+.+..+..+.++|   .+.|.|++  |+|||+.+|+++.+ |+|++||..+++...  ...|..
T Consensus       129 ~l~tGs-GD~TvR~WD~~TeTp~~t~KgH---~~WVlcva--wsPDgk~iASG~~d-g~I~lwdpktg~~~g~~l~gH~K  201 (480)
T KOG0271|consen  129 RLVTGS-GDTTVRLWDLDTETPLFTCKGH---KNWVLCVA--WSPDGKKIASGSKD-GSIRLWDPKTGQQIGRALRGHKK  201 (480)
T ss_pred             eEEecC-CCceEEeeccCCCCcceeecCC---ccEEEEEE--ECCCcchhhccccC-CeEEEecCCCCCcccccccCccc
Confidence            689999 9999999999999999888765   47899999  99999999999998 999999998887664  456899


Q ss_pred             CeeEEEECC-----CCCEEEEecCCCcEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccc
Q 014475           82 PIKPIAANS-----HGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFE  156 (424)
Q Consensus        82 ~v~~~~~s~-----~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~  156 (424)
                      .|++++|.|     ..++||+++.||.|+|||+..+.++..+.+|..+|+|+.|-.+| ++.+|+.|++|++|+..    
T Consensus       202 ~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~g-liySgS~DrtIkvw~a~----  276 (480)
T KOG0271|consen  202 WITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEG-LIYSGSQDRTIKVWRAL----  276 (480)
T ss_pred             ceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCCc-eEEecCCCceEEEEEcc----
Confidence            999999976     57799999999999999999999999999999999999998544 89999999999999984    


Q ss_pred             hhcccccccceEEeecCCcCceeEEEEEEc-----------C-----------------------ceeEEEEEeCCCcEE
Q 014475          157 ECESQRASHLYLHSFTGHTLRITDIVIGYG-----------G-----------------------VSATIVSASEDRTCK  202 (424)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-----------~-----------------------~~~~l~~~~~d~~v~  202 (424)
                             ...+...+++|...|+.++.+.+           +                       .+..|++|+.|.++.
T Consensus       277 -------dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlf  349 (480)
T KOG0271|consen  277 -------DGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLF  349 (480)
T ss_pred             -------chhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEE
Confidence                   35567788999999999988621           1                       124699999999999


Q ss_pred             EEecCCC-ceeeeee-cCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-
Q 014475          203 VWSLLKG-RLLRNIV-FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-  279 (424)
Q Consensus       203 iwd~~~~-~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-  279 (424)
                      +|+.... +++..+. |..-|+.+.|+||++++++++.|..|++||-+++         +.+..+++|-.+|..++|+. 
T Consensus       350 lW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tG---------k~lasfRGHv~~VYqvawsaD  420 (480)
T KOG0271|consen  350 LWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTG---------KFLASFRGHVAAVYQVAWSAD  420 (480)
T ss_pred             EecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCc---------chhhhhhhccceeEEEEeccC
Confidence            9997644 3555555 8899999999999999999999999999999998         67889999999999999999 


Q ss_pred             CCEEEEeCCCCcEEEEeCCCCcEEEEEeccCCCeeEEEEEecCceeeeccCCCceeecc
Q 014475          280 GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSR  338 (424)
Q Consensus       280 ~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~d~~i~iw~  338 (424)
                      .++|++|+.|.++++||+++.+....+.+|..+|.++.|+|||+.+++|+.|..+++|.
T Consensus       421 sRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDwspDG~rV~sggkdkv~~lw~  479 (480)
T KOG0271|consen  421 SRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFAVDWSPDGQRVASGGKDKVLRLWR  479 (480)
T ss_pred             ccEEEEcCCCceEEEEEeeeeeecccCCCCCceEEEEEecCCCceeecCCCceEEEeec
Confidence            89999999999999999999999999999999999999999999999999999999996

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=8e-52  Score=340.51  Aligned_cols=292  Identities=24%  Similarity=0.337  Sum_probs=264.9

Q ss_pred             CCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCceee-eecCCCCeeEEEECCCCCEEEEecCCCcEEEEEcc
Q 014475           32 CASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEV-KSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVA  110 (424)
Q Consensus        32 ~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~  110 (424)
                      ..+|...|.|+.  |+|+|+.|++++.| .++++||..+..+.. ...|...|.|++|+|||+.||+|+.||+|++||.+
T Consensus       111 ~~GH~e~Vl~~~--fsp~g~~l~tGsGD-~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpk  187 (480)
T KOG0271|consen  111 IAGHGEAVLSVQ--FSPTGSRLVTGSGD-TTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPK  187 (480)
T ss_pred             cCCCCCcEEEEE--ecCCCceEEecCCC-ceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCC
Confidence            346778899999  99999999999998 999999999887664 46799999999999999999999999999999999


Q ss_pred             Cccee-eeeccccCCeEEEEEcc-----CCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEE
Q 014475          111 SGRLL-KKWHAHYRAVTCLVFSE-----DGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIG  184 (424)
Q Consensus       111 ~~~~~-~~~~~~~~~i~~~~~~~-----~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  184 (424)
                      +|+++ ..+.+|...|++++|.|     ..++|++++.||.++|||+           ....++..+.+|..+|+|+.|.
T Consensus       188 tg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~-----------~~~~~~~~lsgHT~~VTCvrwG  256 (480)
T KOG0271|consen  188 TGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDT-----------KLGTCVRTLSGHTASVTCVRWG  256 (480)
T ss_pred             CCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEc-----------cCceEEEEeccCccceEEEEEc
Confidence            99765 67899999999999976     5678999999999999999           4466788899999999999997


Q ss_pred             EcCceeEEEEEeCCCcEEEEecCCCceeeeee-cCcceeEEEEC-----------CCCC---------------------
Q 014475          185 YGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALD-----------PAEH---------------------  231 (424)
Q Consensus       185 ~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~-~~~~i~~~~~~-----------~~~~---------------------  231 (424)
                      -.   .++++|+.|++|++|+...|.+.+.+. |...|+.++.+           |.++                     
T Consensus       257 G~---gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~  333 (480)
T KOG0271|consen  257 GE---GLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLK  333 (480)
T ss_pred             CC---ceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhc
Confidence            55   599999999999999999999999888 88888888776           3233                     


Q ss_pred             ----EEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCCCcEEEEE
Q 014475          232 ----VFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMF  306 (424)
Q Consensus       232 ----~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~~~~~  306 (424)
                          .+++|++|.++.+|+-....        +++..+.+|...|+.+.|+| ++++|+++.|.+|++||.++|+.+.+|
T Consensus       334 ~~~erlVSgsDd~tlflW~p~~~k--------kpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasf  405 (480)
T KOG0271|consen  334 DSGERLVSGSDDFTLFLWNPFKSK--------KPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASF  405 (480)
T ss_pred             cCcceeEEecCCceEEEecccccc--------cchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhh
Confidence                49999999999999987765        67888999999999999999 999999999999999999999999999


Q ss_pred             eccCCCeeEEEEEecCceeeeccCCCceeeccCCCCCCCCCc
Q 014475          307 RLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGSQLPPPL  348 (424)
Q Consensus       307 ~~~~~~v~~l~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~  348 (424)
                      ++|-++|..++|+.|.++|++||.|.++++|++++.++...+
T Consensus       406 RGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DL  447 (480)
T KOG0271|consen  406 RGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDL  447 (480)
T ss_pred             hhccceeEEEEeccCccEEEEcCCCceEEEEEeeeeeecccC
Confidence            999999999999999999999999999999999988775544

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=1.9e-49  Score=330.42  Aligned_cols=279  Identities=21%  Similarity=0.296  Sum_probs=260.6

Q ss_pred             CCCceEEecceeecCCCccccCCCCceeEEEEECCCCcee-eeecCCCCeeEEEECCC--CCEEEEecCCCcEEEEEccC
Q 014475           35 PPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVE-VKSLPAEPIKPIAANSH--GTYIAGGGQSGDIYMWEVAS  111 (424)
Q Consensus        35 ~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~-~~~~~~~~v~~~~~s~~--~~~l~~~~~dg~v~iwd~~~  111 (424)
                      ..+++..+.  |+++++.+++++.+ |.++||+..+.... ....|.+.|.++.|+|.  +..+|+|+.||++++|++.+
T Consensus       174 d~rPis~~~--fS~ds~~laT~sws-G~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~  250 (459)
T KOG0272|consen  174 DTRPISGCS--FSRDSKHLATGSWS-GLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQ  250 (459)
T ss_pred             CCCcceeeE--eecCCCeEEEeecC-CceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCC
Confidence            445677777  99999999999998 99999999877554 44679999999999996  67899999999999999999


Q ss_pred             cceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeE
Q 014475          112 GRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSAT  191 (424)
Q Consensus       112 ~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~  191 (424)
                      ..++..+.+|...|..++|+|+|++|+|++.|.+-++||+++.           ..+....+|...|.+++|.++|  ..
T Consensus       251 e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk-----------~ElL~QEGHs~~v~~iaf~~DG--SL  317 (459)
T KOG0272|consen  251 ETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETK-----------SELLLQEGHSKGVFSIAFQPDG--SL  317 (459)
T ss_pred             CcchhhhhcchhhheeeeecCCCceeeecccccchhhcccccc-----------hhhHhhcccccccceeEecCCC--ce
Confidence            9999999999999999999999999999999999999999763           3345568999999999999999  89


Q ss_pred             EEEEeCCCcEEEEecCCCceeeeee-cCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCc
Q 014475          192 IVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSK  270 (424)
Q Consensus       192 l~~~~~d~~v~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~  270 (424)
                      +++|+.|..-+|||+++++++..+. |..+|..+.|+|+|..+++|+.|++++|||++..         ..+..+.+|..
T Consensus       318 ~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r---------~~ly~ipAH~n  388 (459)
T KOG0272|consen  318 AATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMR---------SELYTIPAHSN  388 (459)
T ss_pred             eeccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeeccc---------ccceecccccc
Confidence            9999999999999999999999988 8999999999999999999999999999999997         45888999999


Q ss_pred             CeEEEEecC--CCEEEEeCCCCcEEEEeCCCCcEEEEEeccCCCeeEEEEEecCceeeeccCCCceeecc
Q 014475          271 AVTCLAYST--GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSR  338 (424)
Q Consensus       271 ~i~~~~~~~--~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~d~~i~iw~  338 (424)
                      -|+.+.|+|  |.+|+|++.|++++||...++.+++++.+|.+.|.++..++|++++++++.|.++++|.
T Consensus       389 lVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~  458 (459)
T KOG0272|consen  389 LVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWR  458 (459)
T ss_pred             hhhheEecccCCeEEEEcccCcceeeecCCCcccchhhcCCccceEEEEeccCCceEEEeccCceeeecc
Confidence            999999998  99999999999999999999999999999999999999999999999999999999996

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=4.3e-44  Score=285.09  Aligned_cols=280  Identities=21%  Similarity=0.371  Sum_probs=252.4

Q ss_pred             CCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCc-eeeeecCCCCeeEEEECCCCCEEEEecCCCcEEEEEccC
Q 014475           33 ASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQ-VEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVAS  111 (424)
Q Consensus        33 ~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~-~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~  111 (424)
                      .+|...|.++.  |++|++++++++.| |.+.|||.-+.. ......+...|..++|+|.|+++|+|+-|+...||++.+
T Consensus        52 kGH~~Ki~~~~--ws~Dsr~ivSaSqD-GklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~  128 (343)
T KOG0286|consen   52 KGHLNKIYAMD--WSTDSRRIVSASQD-GKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLST  128 (343)
T ss_pred             cccccceeeeE--ecCCcCeEEeeccC-CeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEeccc
Confidence            35668899999  99999999999998 999999986554 445566788999999999999999999999999999985


Q ss_pred             c------ceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEE
Q 014475          112 G------RLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGY  185 (424)
Q Consensus       112 ~------~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  185 (424)
                      .      ...+.+.+|.+.+.|+.|.+ ..+|+|++.|.+..+||+++           .+.+..+.+|.+.|.++.++|
T Consensus       129 ~d~~g~~~v~r~l~gHtgylScC~f~d-D~~ilT~SGD~TCalWDie~-----------g~~~~~f~GH~gDV~slsl~p  196 (343)
T KOG0286|consen  129 RDAEGNVRVSRELAGHTGYLSCCRFLD-DNHILTGSGDMTCALWDIET-----------GQQTQVFHGHTGDVMSLSLSP  196 (343)
T ss_pred             ccccccceeeeeecCccceeEEEEEcC-CCceEecCCCceEEEEEccc-----------ceEEEEecCCcccEEEEecCC
Confidence            5      34567899999999999987 55799999999999999965           556788999999999999999


Q ss_pred             -cCceeEEEEEeCCCcEEEEecCCCceeeeee-cCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeee
Q 014475          186 -GGVSATIVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIG  263 (424)
Q Consensus       186 -~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~  263 (424)
                       ++  +.+++|+.|+..++||++.+.+.+.|. |...|++++|.|+|.-+++|+.|++.++||++...         .+.
T Consensus       197 ~~~--ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~---------~~a  265 (343)
T KOG0286|consen  197 SDG--NTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQ---------ELA  265 (343)
T ss_pred             CCC--CeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCc---------EEe
Confidence             55  999999999999999999999999998 99999999999999999999999999999999963         333


Q ss_pred             eec--ccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCCCcEEEEEeccCCCeeEEEEEecCceeeeccCCCceeecc
Q 014475          264 SLS--DHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSR  338 (424)
Q Consensus       264 ~~~--~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~d~~i~iw~  338 (424)
                      .+.  ....+|++++|+. |++|.+|..|.++.+||.-.++.+..+.+|.+.|+++..+|||.-+++||.|..++||.
T Consensus       266 ~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~lriW~  343 (343)
T KOG0286|consen  266 VYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAVATGSWDSTLRIWA  343 (343)
T ss_pred             eeccCcccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence            332  3456899999999 99999999999999999999999999999999999999999999999999999999995

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=2.5e-45  Score=305.95  Aligned_cols=265  Identities=20%  Similarity=0.319  Sum_probs=244.4

Q ss_pred             EEEeecCCCCCceEEEeCCCCceEEEeeCCCCCCCceEEecceeecC--CCccccCCCCceeEEEEECCCCcee-eeecC
Q 014475            3 LLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLAS--SQLREQPSASSGSILYWSWSKPQVE-VKSLP   79 (424)
Q Consensus         3 ~~lat~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~l~~~~~~~g~i~vwd~~~~~~~-~~~~~   79 (424)
                      ..||||+ -+|.++||+..+...+.++.+|...   +.++.  |+|.  +..+|+++.| |++++|++++.... ....|
T Consensus       188 ~~laT~s-wsG~~kvW~~~~~~~~~~l~gH~~~---v~~~~--fhP~~~~~~lat~s~D-gtvklw~~~~e~~l~~l~gH  260 (459)
T KOG0272|consen  188 KHLATGS-WSGLVKVWSVPQCNLLQTLRGHTSR---VGAAV--FHPVDSDLNLATASAD-GTVKLWKLSQETPLQDLEGH  260 (459)
T ss_pred             CeEEEee-cCCceeEeecCCcceeEEEeccccc---eeeEE--EccCCCccceeeeccC-CceeeeccCCCcchhhhhcc
Confidence            4689999 9999999999999999999887654   55555  9997  5689999998 99999999986554 44678


Q ss_pred             CCCeeEEEECCCCCEEEEecCCCcEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhc
Q 014475           80 AEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECE  159 (424)
Q Consensus        80 ~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~  159 (424)
                      ...|..++|+|+|++|++++.|.+-++||++++..+....+|...|.+++|.|||.++++|+.|..-+|||+++      
T Consensus       261 ~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRt------  334 (459)
T KOG0272|consen  261 LARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRT------  334 (459)
T ss_pred             hhhheeeeecCCCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCccchhheeeccc------
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999976      


Q ss_pred             ccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeee-cCcceeEEEECC-CCCEEEEEe
Q 014475          160 SQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDP-AEHVFYAGS  237 (424)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~-~~~~i~~~~~~~-~~~~l~~~~  237 (424)
                           ...+-.+.+|..+|.++.|+|+|  ..++||+.|++++|||++..+.+..+. |..-|+.+.|+| .|.+|++++
T Consensus       335 -----gr~im~L~gH~k~I~~V~fsPNG--y~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~Tas  407 (459)
T KOG0272|consen  335 -----GRCIMFLAGHIKEILSVAFSPNG--YHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTAS  407 (459)
T ss_pred             -----CcEEEEecccccceeeEeECCCc--eEEeecCCCCcEEEeeecccccceecccccchhhheEecccCCeEEEEcc
Confidence                 44577789999999999999999  999999999999999999999988887 899999999999 789999999


Q ss_pred             CCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEe
Q 014475          238 RDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWD  296 (424)
Q Consensus       238 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd  296 (424)
                      .|+++++|..++.         .+++.+.+|.+.|.++..++ +.+++|++.|.++++|.
T Consensus       408 yD~t~kiWs~~~~---------~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~  458 (459)
T KOG0272|consen  408 YDNTVKIWSTRTW---------SPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWR  458 (459)
T ss_pred             cCcceeeecCCCc---------ccchhhcCCccceEEEEeccCCceEEEeccCceeeecc
Confidence            9999999999985         78899999999999999999 99999999999999996

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=1.1e-42  Score=270.89  Aligned_cols=279  Identities=15%  Similarity=0.255  Sum_probs=244.9

Q ss_pred             CccccCCCCceeEEEEECCCCceeeeecC-CCCeeEEEECCCCCEEEEecCCCcEEEEEccCcc--eeeeeccccCCeEE
Q 014475           51 QLREQPSASSGSILYWSWSKPQVEVKSLP-AEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGR--LLKKWHAHYRAVTC  127 (424)
Q Consensus        51 ~~l~~~~~~~g~i~vwd~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~--~~~~~~~~~~~i~~  127 (424)
                      -+|++++.| .+|++|...++.+.....| ...|+.+...|+++.||+++. ..|++||++++.  ++.++.+|.+.|..
T Consensus        11 viLvsA~YD-hTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np~Pv~t~e~h~kNVta   88 (311)
T KOG0315|consen   11 VILVSAGYD-HTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNPNPVATFEGHTKNVTA   88 (311)
T ss_pred             eEEEeccCc-ceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccC-CeeEEEEccCCCCCceeEEeccCCceEE
Confidence            467888887 9999999999998877666 678999999999999999876 579999999875  58899999999999


Q ss_pred             EEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecC
Q 014475          128 LVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLL  207 (424)
Q Consensus       128 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~  207 (424)
                      +.|..+|+++.+|++||+++|||++..            .......|..+|+++..+|+.  ..|++|..+|.|++||+.
T Consensus        89 VgF~~dgrWMyTgseDgt~kIWdlR~~------------~~qR~~~~~spVn~vvlhpnQ--teLis~dqsg~irvWDl~  154 (311)
T KOG0315|consen   89 VGFQCDGRWMYTGSEDGTVKIWDLRSL------------SCQRNYQHNSPVNTVVLHPNQ--TELISGDQSGNIRVWDLG  154 (311)
T ss_pred             EEEeecCeEEEecCCCceEEEEeccCc------------ccchhccCCCCcceEEecCCc--ceEEeecCCCcEEEEEcc
Confidence            999999999999999999999999652            223344578999999999998  899999999999999999


Q ss_pred             CCceeeeee--cCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEE
Q 014475          208 KGRLLRNIV--FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLI  284 (424)
Q Consensus       208 ~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~  284 (424)
                      +..+...+.  ....|.++.+.|+|.+++.+...|..++|++-....   .....++..++.|.+.+..+.++| +++|+
T Consensus       155 ~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~---~s~l~P~~k~~ah~~~il~C~lSPd~k~la  231 (311)
T KOG0315|consen  155 ENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQT---ASELEPVHKFQAHNGHILRCLLSPDVKYLA  231 (311)
T ss_pred             CCccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCc---cccceEhhheecccceEEEEEECCCCcEEE
Confidence            876666554  457899999999999999999999999999977432   223467788999999999999999 99999


Q ss_pred             EeCCCCcEEEEeCCCC-cEEEEEeccCCCeeEEEEEecCceeeeccCCCceeeccCCCCCCCCCc
Q 014475          285 SGSEDGMVRVWDPITH-NIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGSQLPPPL  348 (424)
Q Consensus       285 t~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~  348 (424)
                      +++.|.+++||+.++. +.-..+.+|+..++.++||.||+||++|+.|+.+++|++..++.....
T Consensus       232 t~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy  296 (311)
T KOG0315|consen  232 TCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQY  296 (311)
T ss_pred             eecCCceEEEEecCCceeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccCceeeec
Confidence            9999999999999987 666788899999999999999999999999999999999988654433

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=5.8e-42  Score=266.93  Aligned_cols=288  Identities=17%  Similarity=0.285  Sum_probs=248.6

Q ss_pred             EEEeecCCCCCceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCcee---eeecC
Q 014475            3 LLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVE---VKSLP   79 (424)
Q Consensus         3 ~~lat~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~---~~~~~   79 (424)
                      .+||+++ -|-+||+|...+|.+.++++-..++   |..+.  ..|+++.||+++.  ..|++||+.+....   ....|
T Consensus        11 viLvsA~-YDhTIRfWqa~tG~C~rTiqh~dsq---VNrLe--iTpdk~~LAaa~~--qhvRlyD~~S~np~Pv~t~e~h   82 (311)
T KOG0315|consen   11 VILVSAG-YDHTIRFWQALTGICSRTIQHPDSQ---VNRLE--ITPDKKDLAAAGN--QHVRLYDLNSNNPNPVATFEGH   82 (311)
T ss_pred             eEEEecc-CcceeeeeehhcCeEEEEEecCccc---eeeEE--EcCCcchhhhccC--CeeEEEEccCCCCCceeEEecc
Confidence            7899999 9999999999999999999865555   55555  9999999999998  69999999876642   33458


Q ss_pred             CCCeeEEEECCCCCEEEEecCCCcEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhc
Q 014475           80 AEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECE  159 (424)
Q Consensus        80 ~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~  159 (424)
                      ...|+++.|..+|+++++|++||+++|||++...+.+.++ |..+|+++..+|+...|++|..+|.|++||+.+....  
T Consensus        83 ~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~-~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~--  159 (311)
T KOG0315|consen   83 TKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQ-HNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCT--  159 (311)
T ss_pred             CCceEEEEEeecCeEEEecCCCceEEEEeccCcccchhcc-CCCCcceEEecCCcceEEeecCCCcEEEEEccCCccc--
Confidence            8999999999999999999999999999999977777666 7799999999999999999999999999999652211  


Q ss_pred             ccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCc------eeeeee-cCcceeEEEECCCCCE
Q 014475          160 SQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGR------LLRNIV-FPSVIDAIALDPAEHV  232 (424)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~------~~~~~~-~~~~i~~~~~~~~~~~  232 (424)
                              .........+|.++.+.|++  ..++.+...|.+.+|++-+..      ++.+++ |.+.+..+.++|++++
T Consensus       160 --------~~liPe~~~~i~sl~v~~dg--sml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~  229 (311)
T KOG0315|consen  160 --------HELIPEDDTSIQSLTVMPDG--SMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKY  229 (311)
T ss_pred             --------cccCCCCCcceeeEEEcCCC--cEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcE
Confidence                    11123344689999999999  899999999999999987643      344444 7889999999999999


Q ss_pred             EEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCCCcEEEEEeccCC
Q 014475          233 FYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKG  311 (424)
Q Consensus       233 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~  311 (424)
                      |++++.|.+++||+.++..        +....+.+|...+..++|+. +.||+||+.|+.+++||+..++.++...+|..
T Consensus       230 lat~ssdktv~iwn~~~~~--------kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~gh~K  301 (311)
T KOG0315|consen  230 LATCSSDKTVKIWNTDDFF--------KLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQYQGHHK  301 (311)
T ss_pred             EEeecCCceEEEEecCCce--------eeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccCceeeecCCccc
Confidence            9999999999999999852        55677889999999999999 99999999999999999999999999999988


Q ss_pred             CeeEEEEE
Q 014475          312 PVNNILVV  319 (424)
Q Consensus       312 ~v~~l~~s  319 (424)
                      +..+++..
T Consensus       302 ~~vc~~ln  309 (311)
T KOG0315|consen  302 AAVCVALN  309 (311)
T ss_pred             ccEEEEee
Confidence            87777654

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=7.1e-42  Score=270.77  Aligned_cols=282  Identities=18%  Similarity=0.325  Sum_probs=238.9

Q ss_pred             CCCCceEEecceeecCC-CccccCCCCceeEEEEECCCCce------eeeecCCCCeeEEEECCCCCEEEEecCCCcEEE
Q 014475           34 SPPHGLACVGQRFLASS-QLREQPSASSGSILYWSWSKPQV------EVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYM  106 (424)
Q Consensus        34 ~~~~~v~~~~~~~~~~~-~~l~~~~~~~g~i~vwd~~~~~~------~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~i  106 (424)
                      +|.+.|..++  ..+.+ +.+++++.| .++.+|++.....      .....|...|..+..++||++.++++.|+++++
T Consensus        13 gh~d~Vt~la--~~~~~~~~l~sasrD-k~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrl   89 (315)
T KOG0279|consen   13 GHTDWVTALA--IKIKNSDILVSASRD-KTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRL   89 (315)
T ss_pred             CCCceEEEEE--eecCCCceEEEcccc-eEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccceEEE
Confidence            4556777777  66664 455556665 9999999875432      233568999999999999999999999999999


Q ss_pred             EEccCcceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeec--CCcCceeEEEEE
Q 014475          107 WEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFT--GHTLRITDIVIG  184 (424)
Q Consensus       107 wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~~  184 (424)
                      ||+.+++..+.|.+|...|.+++|++|.+.+++|+.|.+|++|+...            .+..+..  .+...|.|+.|+
T Consensus        90 WDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g------------~ck~t~~~~~~~~WVscvrfs  157 (315)
T KOG0279|consen   90 WDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLG------------VCKYTIHEDSHREWVSCVRFS  157 (315)
T ss_pred             EEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecc------------cEEEEEecCCCcCcEEEEEEc
Confidence            99999999999999999999999999999999999999999999843            1222222  237899999999


Q ss_pred             EcCceeEEEEEeCCCcEEEEecCCCceeeeee-cCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeee
Q 014475          185 YGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIG  263 (424)
Q Consensus       185 ~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~  263 (424)
                      |+....++++++.|++|++||+++.+....+. |.+.++.++++|||...++|+.||.+.+||++.++         .+.
T Consensus       158 P~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k---------~ly  228 (315)
T KOG0279|consen  158 PNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGK---------NLY  228 (315)
T ss_pred             CCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCc---------eeE
Confidence            99756899999999999999999998887777 88999999999999999999999999999999974         333


Q ss_pred             eecccCcCeEEEEecCCCEEEEeCCCCcEEEEeCCCCcEEEEEecc---------CCCeeEEEEEecCceeeeccCCCce
Q 014475          264 SLSDHSKAVTCLAYSTGDLLISGSEDGMVRVWDPITHNIVRMFRLA---------KGPVNNILVVRRPLYLNLGSFSNPH  334 (424)
Q Consensus       264 ~~~~~~~~i~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~---------~~~v~~l~~s~~~~~l~~~~~d~~i  334 (424)
                      . .+|...|.+++|+|.++.+++..+..|+|||+.++.++..++..         .-...+++|++||+.|.+|-.|+.|
T Consensus       229 s-l~a~~~v~sl~fspnrywL~~at~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~i  307 (315)
T KOG0279|consen  229 S-LEAFDIVNSLCFSPNRYWLCAATATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVI  307 (315)
T ss_pred             e-ccCCCeEeeEEecCCceeEeeccCCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcE
Confidence            3 36889999999999777777777888999999999988876532         1235678999999999999999999


Q ss_pred             eeccCC
Q 014475          335 TSSRRH  340 (424)
Q Consensus       335 ~iw~~~  340 (424)
                      ++|.+.
T Consensus       308 rv~qv~  313 (315)
T KOG0279|consen  308 RVWQVA  313 (315)
T ss_pred             EEEEee
Confidence            999864

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=100.00  E-value=9.4e-44  Score=295.25  Aligned_cols=278  Identities=21%  Similarity=0.316  Sum_probs=247.1

Q ss_pred             CceEEecceeecCCCccccCCCCceeEEEEECCCCcee-eeecCCCCeeEEEECCCCCEEEEecCCCcEEEEEccCccee
Q 014475           37 HGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVE-VKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLL  115 (424)
Q Consensus        37 ~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~  115 (424)
                      ..|..+.  |.|+|+.|++++.. |.+.+|+...-... +...|..+|+++.|++++.++++|+.+|.|++|+..-.. +
T Consensus        97 c~V~~v~--WtPeGRRLltgs~S-GEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnn-V  172 (464)
T KOG0284|consen   97 CPVNVVR--WTPEGRRLLTGSQS-GEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNN-V  172 (464)
T ss_pred             cceeeEE--EcCCCceeEeeccc-ccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhh-h
Confidence            3456666  99999999999998 99999998654433 456799999999999999999999999999999976544 4


Q ss_pred             eeecc-ccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEE
Q 014475          116 KKWHA-HYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVS  194 (424)
Q Consensus       116 ~~~~~-~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~  194 (424)
                      +.++. |...|++++|+|++..|++++.||+|+|||...           ......+.+|.-.|.++.|+|..  ..+++
T Consensus       173 k~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~-----------~kee~vL~GHgwdVksvdWHP~k--gLias  239 (464)
T KOG0284|consen  173 KIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRM-----------PKEERVLRGHGWDVKSVDWHPTK--GLIAS  239 (464)
T ss_pred             HHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccC-----------CchhheeccCCCCcceeccCCcc--ceeEE
Confidence            44444 459999999999999999999999999999955           33345568999999999999998  89999


Q ss_pred             EeCCCcEEEEecCCCceeeeee-cCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeE
Q 014475          195 ASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVT  273 (424)
Q Consensus       195 ~~~d~~v~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~  273 (424)
                      ++.|..|++||.++++++.++. |...|..+.|+|++++|++++.|..++++|+++.         +.+..+++|...++
T Consensus       240 gskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~m---------kEl~~~r~Hkkdv~  310 (464)
T KOG0284|consen  240 GSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTM---------KELFTYRGHKKDVT  310 (464)
T ss_pred             ccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHh---------HHHHHhhcchhhhe
Confidence            9999999999999999999887 8999999999999999999999999999999964         66888999999999


Q ss_pred             EEEecC--CCEEEEeCCCCcEEEEeCCCCcEEEEEe-ccCCCeeEEEEEecCceeeeccCCCceeeccCC
Q 014475          274 CLAYST--GDLLISGSEDGMVRVWDPITHNIVRMFR-LAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRH  340 (424)
Q Consensus       274 ~~~~~~--~~~l~t~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~l~~s~~~~~l~~~~~d~~i~iw~~~  340 (424)
                      ++.|+|  ..+|.+|+.||.|..|.+...+++..+. +|.+.|++++|+|-|..|++|+.|.++++|...
T Consensus       311 ~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r~  380 (464)
T KOG0284|consen  311 SLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWTRN  380 (464)
T ss_pred             eeccccccccceeeccCCCceEEEeccccccccCCCcccccceeeeeccccceeEeecCCCcceeeeccC
Confidence            999999  8899999999999999998666666554 689999999999999999999999999999765

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=2.2e-41  Score=286.17  Aligned_cols=309  Identities=21%  Similarity=0.372  Sum_probs=274.2

Q ss_pred             EEeecCCCCCceEEEeCCC--C--ceEEEeeCC-------CCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCc
Q 014475            4 LIASSSVADTGIGCWDLES--G--AEQLRYKSC-------ASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQ   72 (424)
Q Consensus         4 ~lat~~~~dg~i~vwd~~~--~--~~~~~~~~~-------~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~   72 (424)
                      +||+++ .|.+.++|++..  .  .....++.+       ......|++++  |+.+|..||++..+ |.+++|+.....
T Consensus       193 llasg~-~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~--Wn~~G~~LatG~~~-G~~riw~~~G~l  268 (524)
T KOG0273|consen  193 LLASGS-GDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLD--WNNDGTLLATGSED-GEARIWNKDGNL  268 (524)
T ss_pred             hhhccC-CccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEE--ecCCCCeEEEeecC-cEEEEEecCchh
Confidence            688899 999999999874  1  111112111       11236799999  99999999999998 999999999888


Q ss_pred             eeeeecCCCCeeEEEECCCCCEEEEecCCCcEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCC
Q 014475           73 VEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLL  152 (424)
Q Consensus        73 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~  152 (424)
                      ......|.+||.++.|+..|+||++++.|+++.+||..+++..+.+.-|..+-..+.|-.+ ..|++++.||.|+++.+ 
T Consensus       269 ~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~-~~F~ts~td~~i~V~kv-  346 (524)
T KOG0273|consen  269 ISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSN-DEFATSSTDGCIHVCKV-  346 (524)
T ss_pred             hhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEecC-ceEeecCCCceEEEEEe-
Confidence            8888889999999999999999999999999999999999999999989888888999854 46899999999999999 


Q ss_pred             cccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeee-cCcceeEEEECCCC-
Q 014475          153 TVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAE-  230 (424)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~-  230 (424)
                                ....++.++.+|.++|.++.|+|.+  .+|++++.|++++||..........+. |...|..+.|+|.| 
T Consensus       347 ----------~~~~P~~t~~GH~g~V~alk~n~tg--~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~  414 (524)
T KOG0273|consen  347 ----------GEDRPVKTFIGHHGEVNALKWNPTG--SLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGP  414 (524)
T ss_pred             ----------cCCCcceeeecccCceEEEEECCCC--ceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCC
Confidence                      4566788999999999999999999  999999999999999998888888777 88899999999864 


Q ss_pred             --------CEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCCCc
Q 014475          231 --------HVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHN  301 (424)
Q Consensus       231 --------~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~  301 (424)
                              ..+++++.|+++++||+..+         .++..+..|..+|.+++|+| ++++|+|+.||.|.+|+.++++
T Consensus       415 v~~n~~~~~~l~sas~dstV~lwdv~~g---------v~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~  485 (524)
T KOG0273|consen  415 VTSNPNMNLMLASASFDSTVKLWDVESG---------VPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGK  485 (524)
T ss_pred             ccCCCcCCceEEEeecCCeEEEEEccCC---------ceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccchh
Confidence                    46899999999999999997         67888999999999999999 9999999999999999999999


Q ss_pred             EEEEEeccCCCeeEEEEEecCceeeeccCCCceeeccCC
Q 014475          302 IVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRH  340 (424)
Q Consensus       302 ~~~~~~~~~~~v~~l~~s~~~~~l~~~~~d~~i~iw~~~  340 (424)
                      .++...+ .+.|..++|+.+|.+|..+-.|+.+++-|++
T Consensus       486 l~~s~~~-~~~Ifel~Wn~~G~kl~~~~sd~~vcvldlr  523 (524)
T KOG0273|consen  486 LVKSYQG-TGGIFELCWNAAGDKLGACASDGSVCVLDLR  523 (524)
T ss_pred             eeEeecC-CCeEEEEEEcCCCCEEEEEecCCCceEEEec
Confidence            9999985 5679999999999999999999999987764

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=1.7e-41  Score=301.55  Aligned_cols=325  Identities=22%  Similarity=0.332  Sum_probs=262.8

Q ss_pred             EEEeecCCCCCceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCc--cccCCCCceeEEEEECCCCce--eeeec
Q 014475            3 LLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQL--REQPSASSGSILYWSWSKPQV--EVKSL   78 (424)
Q Consensus         3 ~~lat~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~--l~~~~~~~g~i~vwd~~~~~~--~~~~~   78 (424)
                      .+||+|+ .||.++|||+..+.+...|++|.   +.|.++.  |+|+-.+  |++++.| +.+++||+.....  .....
T Consensus       118 ~LlAtgg-aD~~v~VWdi~~~~~th~fkG~g---GvVssl~--F~~~~~~~lL~sg~~D-~~v~vwnl~~~~tcl~~~~~  190 (775)
T KOG0319|consen  118 TLLATGG-ADGRVKVWDIKNGYCTHSFKGHG---GVVSSLL--FHPHWNRWLLASGATD-GTVRVWNLNDKRTCLHTMIL  190 (775)
T ss_pred             ceEEecc-ccceEEEEEeeCCEEEEEecCCC---ceEEEEE--eCCccchhheeecCCC-ceEEEEEcccCchHHHHHHh
Confidence            4799999 99999999999999999998765   5577777  8887654  4555555 9999999986544  23456


Q ss_pred             CCCCeeEEEECCCCCEEEEecCCCcEEEEEccCcceeee-----------------------------------------
Q 014475           79 PAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKK-----------------------------------------  117 (424)
Q Consensus        79 ~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~-----------------------------------------  117 (424)
                      |...|++++|++|+..+++++.|..+.+||+.+.+....                                         
T Consensus       191 H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~  270 (775)
T KOG0319|consen  191 HKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESVVRLREELGGKGEYIITAGGSGVVQYWDSESG  270 (775)
T ss_pred             hhhheeeeeeccCCceEEEeccCcEEEEeehhhhhhhheechhhheeeEEEechhcCCcceEEEEecCCceEEEEecccc
Confidence            888999999999888788778877777777632110000                                         


Q ss_pred             --------------------------------------------------------------------------------
Q 014475          118 --------------------------------------------------------------------------------  117 (424)
Q Consensus       118 --------------------------------------------------------------------------------  117 (424)
                                                                                                      
T Consensus       271 ~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~  350 (775)
T KOG0319|consen  271 KCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRL  350 (775)
T ss_pred             hhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEE
Confidence                                                                                            


Q ss_pred             ----------eccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcC
Q 014475          118 ----------WHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGG  187 (424)
Q Consensus       118 ----------~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  187 (424)
                                +.+|...|.++....+|-+|++|+.|.++++|.+++..       .+..++....+|...|.+++++..+
T Consensus       351 y~~~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~-------~~~~~~a~~~gH~~svgava~~~~~  423 (775)
T KOG0319|consen  351 YTLPTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNC-------SKSLCVAQANGHTNSVGAVAGSKLG  423 (775)
T ss_pred             EecCCCceEEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCc-------chhhhhhhhcccccccceeeecccC
Confidence                      01455556666644455677788888888888773311       2334556678999999999997766


Q ss_pred             ceeEEEEEeCCCcEEEEecCCCce---eeee-------ecCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCc
Q 014475          188 VSATIVSASEDRTCKVWSLLKGRL---LRNI-------VFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSY  257 (424)
Q Consensus       188 ~~~~l~~~~~d~~v~iwd~~~~~~---~~~~-------~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  257 (424)
                      . .+|+++|.|.++++|++...+.   ...+       .|+..|++++++|+.+++++|+.|.+.++|+++..       
T Consensus       424 a-sffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~-------  495 (775)
T KOG0319|consen  424 A-SFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQL-------  495 (775)
T ss_pred             c-cEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCc-------
Confidence            5 8999999999999999976221   1111       27889999999999999999999999999999954       


Q ss_pred             CceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCCCcEEEEEeccCCCeeEEEEEecCceeeeccCCCceee
Q 014475          258 GMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTS  336 (424)
Q Consensus       258 ~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~d~~i~i  336 (424)
                        .....+.+|...|.++.|+| ++.++|+|.|++|+||.+.+..++++|.+|...|..+.|-.++..|++++.||.+++
T Consensus       496 --~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKl  573 (775)
T KOG0319|consen  496 --RLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKL  573 (775)
T ss_pred             --eEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEE
Confidence              78899999999999999999 999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCCCCCCCcccc
Q 014475          337 SRRHGSQLPPPLDKY  351 (424)
Q Consensus       337 w~~~~~~~~~~~~~~  351 (424)
                      |+++++++...+..+
T Consensus       574 Wnikt~eC~~tlD~H  588 (775)
T KOG0319|consen  574 WNIKTNECEMTLDAH  588 (775)
T ss_pred             Eeccchhhhhhhhhc
Confidence            999999987666543

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=100.00  E-value=7.8e-40  Score=280.38  Aligned_cols=324  Identities=19%  Similarity=0.291  Sum_probs=256.0

Q ss_pred             EEEeecCCCCCceEEEeCCCCceE--EEeeCCCCCCCceEEecceeecCCCccccCCCCc---eeEEEEECCCC--c---
Q 014475            3 LLIASSSVADTGIGCWDLESGAEQ--LRYKSCASPPHGLACVGQRFLASSQLREQPSASS---GSILYWSWSKP--Q---   72 (424)
Q Consensus         3 ~~lat~~~~dg~i~vwd~~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~---g~i~vwd~~~~--~---   72 (424)
                      .|+|+|+ ..|+|||||....+.+  .+++...   .+|..++  |+++++++++.|..-   |.+.+||..+.  +   
T Consensus        72 ~yiASGD-~sG~vRIWdtt~~~hiLKnef~v~a---G~I~Di~--Wd~ds~RI~avGEGrerfg~~F~~DSG~SvGei~G  145 (603)
T KOG0318|consen   72 FYIASGD-VSGKVRIWDTTQKEHILKNEFQVLA---GPIKDIS--WDFDSKRIAAVGEGRERFGHVFLWDSGNSVGEITG  145 (603)
T ss_pred             eEEeecC-CcCcEEEEeccCcceeeeeeeeecc---cccccce--eCCCCcEEEEEecCccceeEEEEecCCCccceeec
Confidence            3899999 9999999998763333  2344443   3455555  888888887776421   45667765421  0   


Q ss_pred             ----------------------------------eee---eecCCCCeeEEEECCCCCEEEEecCCCcEEEEEccCccee
Q 014475           73 ----------------------------------VEV---KSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLL  115 (424)
Q Consensus        73 ----------------------------------~~~---~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~  115 (424)
                                                        ..+   ...|..-|+|++|+|||..+|+++.||++.+||=.+++.+
T Consensus       146 hSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~v  225 (603)
T KOG0318|consen  146 HSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKV  225 (603)
T ss_pred             cceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEE
Confidence                                              000   1125668999999999999999999999999999999999


Q ss_pred             eeec---cccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcc--------------------------------
Q 014475          116 KKWH---AHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECES--------------------------------  160 (424)
Q Consensus       116 ~~~~---~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~--------------------------------  160 (424)
                      ..+.   +|.+.|.+++|+||++.+++++.|.+++|||+.+.....+.                                
T Consensus       226 g~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~l  305 (603)
T KOG0318|consen  226 GELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYL  305 (603)
T ss_pred             EEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEe
Confidence            9997   89999999999999999999999999999999774322110                                


Q ss_pred             cccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeee-----------ee-cC----------
Q 014475          161 QRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRN-----------IV-FP----------  218 (424)
Q Consensus       161 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~-----------~~-~~----------  218 (424)
                      ........+.+.+|...|+++..++++  .+|++|+.||.|.-||..++..-+.           +. ..          
T Consensus       306 n~~d~~~~~~i~GHnK~ITaLtv~~d~--~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~D  383 (603)
T KOG0318|consen  306 NPSDPSVLKVISGHNKSITALTVSPDG--KTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWD  383 (603)
T ss_pred             cccCCChhheecccccceeEEEEcCCC--CEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecC
Confidence            011222456778999999999999999  9999999999999999865432211           10 00          


Q ss_pred             ------------------------------------------------------------cceeEEEECCCCCEEEEEeC
Q 014475          219 ------------------------------------------------------------SVIDAIALDPAEHVFYAGSR  238 (424)
Q Consensus       219 ------------------------------------------------------------~~i~~~~~~~~~~~l~~~~~  238 (424)
                                                                                  -...+++++|++..+++|+.
T Consensus       384 d~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~  463 (603)
T KOG0318|consen  384 DTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQ  463 (603)
T ss_pred             CeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecc
Confidence                                                                        03467899999999999999


Q ss_pred             CCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCCCcEEE-EEeccCCCeeEE
Q 014475          239 DGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVR-MFRLAKGPVNNI  316 (424)
Q Consensus       239 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~~~-~~~~~~~~v~~l  316 (424)
                      |+++++|.+.....       ........|.++|++++++| +.+||+|...+.+.+||+.+.+... .+.-|...|.++
T Consensus       464 Dgkvhvysl~g~~l-------~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~  536 (603)
T KOG0318|consen  464 DGKVHVYSLSGDEL-------KEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTNRWAFHTAKINCV  536 (603)
T ss_pred             cceEEEEEecCCcc-------cceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCceecceeeeeeeeEEEE
Confidence            99999999988642       23345667999999999999 9999999999999999999887743 344599999999


Q ss_pred             EEEecCceeeeccCCCceeeccCCC
Q 014475          317 LVVRRPLYLNLGSFSNPHTSSRRHG  341 (424)
Q Consensus       317 ~~s~~~~~l~~~~~d~~i~iw~~~~  341 (424)
                      +|+|+..++|+|+.|-.|.+|++..
T Consensus       537 aWsP~n~~vATGSlDt~Viiysv~k  561 (603)
T KOG0318|consen  537 AWSPNNKLVATGSLDTNVIIYSVKK  561 (603)
T ss_pred             EeCCCceEEEeccccceEEEEEccC
Confidence            9999999999999999999999873

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=9e-41  Score=282.42  Aligned_cols=288  Identities=19%  Similarity=0.332  Sum_probs=252.8

Q ss_pred             CCCceEEecceeecCCC-ccccCCCCceeEEEEECCC------Cceeee---------ecCCCCeeEEEECCCCCEEEEe
Q 014475           35 PPHGLACVGQRFLASSQ-LREQPSASSGSILYWSWSK------PQVEVK---------SLPAEPIKPIAANSHGTYIAGG   98 (424)
Q Consensus        35 ~~~~v~~~~~~~~~~~~-~l~~~~~~~g~i~vwd~~~------~~~~~~---------~~~~~~v~~~~~s~~~~~l~~~   98 (424)
                      |...|.+.+  |.|-.. .+++++.+ -+.++|++..      .+..++         ......|++++|+.+|..||+|
T Consensus       177 ~~~~V~~~~--WnP~~~~llasg~~~-s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~LatG  253 (524)
T KOG0273|consen  177 HESEVFICA--WNPLRDGLLASGSGD-STARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLLATG  253 (524)
T ss_pred             CCCceEEEe--cCchhhhhhhccCCc-cceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeEEEe
Confidence            567788888  999988 67777776 9999999874      111111         1124689999999999999999


Q ss_pred             cCCCcEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCce
Q 014475           99 GQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRI  178 (424)
Q Consensus        99 ~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i  178 (424)
                      ..||.++||+ ..|.++.++..|.++|.++.|+..|.+|++++.||++.+||..+           ....+.+.-|..+-
T Consensus       254 ~~~G~~riw~-~~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~-----------g~~~q~f~~~s~~~  321 (524)
T KOG0273|consen  254 SEDGEARIWN-KDGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHT-----------GTVKQQFEFHSAPA  321 (524)
T ss_pred             ecCcEEEEEe-cCchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccC-----------ceEEEeeeeccCCc
Confidence            9999999999 47888999999999999999999999999999999999999954           44556677788887


Q ss_pred             eEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeee-cCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCc
Q 014475          179 TDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSY  257 (424)
Q Consensus       179 ~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  257 (424)
                      .++.|-.+   ..+++++.|+.|+++.+....++.++. |.+.|.++.|+|.+.+|++++.|++++||+....       
T Consensus       322 lDVdW~~~---~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~-------  391 (524)
T KOG0273|consen  322 LDVDWQSN---DEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQS-------  391 (524)
T ss_pred             cceEEecC---ceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCC-------
Confidence            77888766   689999999999999999988988888 8999999999999999999999999999998776       


Q ss_pred             CceeeeeecccCcCeEEEEecC-C---------CEEEEeCCCCcEEEEeCCCCcEEEEEeccCCCeeEEEEEecCceeee
Q 014475          258 GMHIIGSLSDHSKAVTCLAYST-G---------DLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNL  327 (424)
Q Consensus       258 ~~~~~~~~~~~~~~i~~~~~~~-~---------~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~  327 (424)
                        .....+.+|...|..+.|+| +         ..+++++.|++|++||+..+.+++.|..|..||.+++|+|+|++||+
T Consensus       392 --~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAs  469 (524)
T KOG0273|consen  392 --NSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLAS  469 (524)
T ss_pred             --cchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEe
Confidence              56778899999999999987 3         38999999999999999999999999999999999999999999999


Q ss_pred             ccCCCceeeccCCCCCCCCCcc
Q 014475          328 GSFSNPHTSSRRHGSQLPPPLD  349 (424)
Q Consensus       328 ~~~d~~i~iw~~~~~~~~~~~~  349 (424)
                      |+.||.|.+|+.+++++...+.
T Consensus       470 Gs~dg~V~iws~~~~~l~~s~~  491 (524)
T KOG0273|consen  470 GSLDGCVHIWSTKTGKLVKSYQ  491 (524)
T ss_pred             cCCCCeeEeccccchheeEeec
Confidence            9999999999999887765543

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=1e-39  Score=260.21  Aligned_cols=264  Identities=20%  Similarity=0.326  Sum_probs=238.5

Q ss_pred             EEEeecCCCCCceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCC--c-----eee
Q 014475            3 LLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKP--Q-----VEV   75 (424)
Q Consensus         3 ~~lat~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~--~-----~~~   75 (424)
                      ..|++++ .||.+.|||.-+...+..+..   +...|..++  |+|.|+++|.+|-| +...||++...  +     ...
T Consensus        68 r~ivSaS-qDGklIvWDs~TtnK~haipl---~s~WVMtCA--~sPSg~~VAcGGLd-N~Csiy~ls~~d~~g~~~v~r~  140 (343)
T KOG0286|consen   68 RRIVSAS-QDGKLIVWDSFTTNKVHAIPL---PSSWVMTCA--YSPSGNFVACGGLD-NKCSIYPLSTRDAEGNVRVSRE  140 (343)
T ss_pred             CeEEeec-cCCeEEEEEcccccceeEEec---CceeEEEEE--ECCCCCeEEecCcC-ceeEEEecccccccccceeeee
Confidence            4689999 999999999998888877754   335677777  99999999999998 99999999854  2     123


Q ss_pred             eecCCCCeeEEEECCCCCEEEEecCCCcEEEEEccCcceeeeeccccCCeEEEEEcc-CCcEEEEeeCCCcEEEEeCCcc
Q 014475           76 KSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSE-DGSFLISGSEDGCVRIWSLLTV  154 (424)
Q Consensus        76 ~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~s~~~dg~i~iwd~~~~  154 (424)
                      ...|.+-+.|+.|-+| ..|++++.|.+..+||+++++.+..+.+|.+.|.++.++| +++.+++|+-|+..++||++. 
T Consensus       141 l~gHtgylScC~f~dD-~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~-  218 (343)
T KOG0286|consen  141 LAGHTGYLSCCRFLDD-NHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRS-  218 (343)
T ss_pred             ecCccceeEEEEEcCC-CceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccC-
Confidence            4568999999999885 4688999999999999999999999999999999999999 999999999999999999965 


Q ss_pred             cchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeeecC---cceeEEEECCCCC
Q 014475          155 FEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFP---SVIDAIALDPAEH  231 (424)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~---~~i~~~~~~~~~~  231 (424)
                                ....+.+.+|+..|++++|.|+|  .-+++|+.|++.++||++..+.+..+.++   .+|++++|+..|+
T Consensus       219 ----------~~c~qtF~ghesDINsv~ffP~G--~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGR  286 (343)
T KOG0286|consen  219 ----------GQCVQTFEGHESDINSVRFFPSG--DAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGR  286 (343)
T ss_pred             ----------cceeEeecccccccceEEEccCC--CeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEccccc
Confidence                      56789999999999999999999  89999999999999999999998888754   6899999999999


Q ss_pred             EEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEe
Q 014475          232 VFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWD  296 (424)
Q Consensus       232 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd  296 (424)
                      +|++|..|.++.+||.-.+         +.+..+.+|++.|+++..+| |-.++||+.|..++||.
T Consensus       287 lLfagy~d~~c~vWDtlk~---------e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~lriW~  343 (343)
T KOG0286|consen  287 LLFAGYDDFTCNVWDTLKG---------ERVGVLAGHENRVSCLGVSPDGMAVATGSWDSTLRIWA  343 (343)
T ss_pred             EEEeeecCCceeEeecccc---------ceEEEeeccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence            9999999999999999876         56788999999999999999 99999999999999994

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=100.00  E-value=1.9e-39  Score=266.20  Aligned_cols=308  Identities=21%  Similarity=0.294  Sum_probs=265.7

Q ss_pred             EEEeecCCCCCceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCceeeeec-CCC
Q 014475            3 LLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSL-PAE   81 (424)
Q Consensus         3 ~~lat~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~~~-~~~   81 (424)
                      .++|||+ .|..-.||++.+|.....+.+   |...|+++.  |+.+|.+||+++.+ |.|+||+..++....... ..+
T Consensus        77 ~l~aTGG-gDD~AflW~~~~ge~~~eltg---HKDSVt~~~--FshdgtlLATGdms-G~v~v~~~stg~~~~~~~~e~~  149 (399)
T KOG0296|consen   77 NLVATGG-GDDLAFLWDISTGEFAGELTG---HKDSVTCCS--FSHDGTLLATGDMS-GKVLVFKVSTGGEQWKLDQEVE  149 (399)
T ss_pred             ceEEecC-CCceEEEEEccCCcceeEecC---CCCceEEEE--EccCceEEEecCCC-ccEEEEEcccCceEEEeecccC
Confidence            4789999 999999999999998777765   557899999  99999999999998 999999999988776665 677


Q ss_pred             CeeEEEECCCCCEEEEecCCCcEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhccc
Q 014475           82 PIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQ  161 (424)
Q Consensus        82 ~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~  161 (424)
                      .+.-+.|+|.+..|++|+.||.+.+|.+.++...+.+.+|..++++-.|.|+|+.++++..||+|++||+.++.      
T Consensus       150 dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~------  223 (399)
T KOG0296|consen  150 DIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQ------  223 (399)
T ss_pred             ceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCc------
Confidence            89999999999999999999999999999988889999999999999999999999999999999999997743      


Q ss_pred             ccccceEEeec-CCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeee---------cCcceeEEEEC---C
Q 014475          162 RASHLYLHSFT-GHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV---------FPSVIDAIALD---P  228 (424)
Q Consensus       162 ~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~---------~~~~i~~~~~~---~  228 (424)
                           ++.... .......++.++..+  ..++.|+.++.+++-+..+++.+....         +...+.++.+.   .
T Consensus       224 -----p~~~~~~~e~~~~~~~~~~~~~--~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss  296 (399)
T KOG0296|consen  224 -----PLHKITQAEGLELPCISLNLAG--STLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSS  296 (399)
T ss_pred             -----eeEEecccccCcCCcccccccc--ceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhccccc
Confidence                 233332 223456677777777  788899999999999888888766554         23344455444   4


Q ss_pred             CCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecCCCEEEEeCCCCcEEEEeCCCCcEEEEEec
Q 014475          229 AEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTGDLLISGSEDGMVRVWDPITHNIVRMFRL  308 (424)
Q Consensus       229 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~  308 (424)
                      .=.+.|+|+-||+|.|||+....          ++..-.|..+|+.+.|-+..+|++++.+|.|+.||.++|+++.++.+
T Consensus       297 ~lpL~A~G~vdG~i~iyD~a~~~----------~R~~c~he~~V~~l~w~~t~~l~t~c~~g~v~~wDaRtG~l~~~y~G  366 (399)
T KOG0296|consen  297 KLPLAACGSVDGTIAIYDLAAST----------LRHICEHEDGVTKLKWLNTDYLLTACANGKVRQWDARTGQLKFTYTG  366 (399)
T ss_pred             ccchhhcccccceEEEEecccch----------hheeccCCCceEEEEEcCcchheeeccCceEEeeeccccceEEEEec
Confidence            55778999999999999998853          44555689999999999888999999999999999999999999999


Q ss_pred             cCCCeeEEEEEecCceeeeccCCCceeeccCC
Q 014475          309 AKGPVNNILVVRRPLYLNLGSFSNPHTSSRRH  340 (424)
Q Consensus       309 ~~~~v~~l~~s~~~~~l~~~~~d~~i~iw~~~  340 (424)
                      |..+|.+++.+|+.++++++|.|++.++++.+
T Consensus       367 H~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v~  398 (399)
T KOG0296|consen  367 HQMGILDFALSPQKRLVVTVSDDNTALVFEVP  398 (399)
T ss_pred             CchheeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence            99999999999999999999999999999864

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=100.00  E-value=3.7e-40  Score=269.60  Aligned_cols=284  Identities=19%  Similarity=0.370  Sum_probs=256.8

Q ss_pred             CCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCceeee-ecCCCCeeEEEECCCCCEEEEecCCCcEEEEEccC
Q 014475           33 ASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVK-SLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVAS  111 (424)
Q Consensus        33 ~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~  111 (424)
                      .+|.+.|.|++  +.|.++++++++.| ++|+|||+.++++... ..|-..|..+++|+-..|+++++.|+.|+.||++.
T Consensus       148 ~gHlgWVr~va--vdP~n~wf~tgs~D-rtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~  224 (460)
T KOG0285|consen  148 SGHLGWVRSVA--VDPGNEWFATGSAD-RTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEY  224 (460)
T ss_pred             hhccceEEEEe--eCCCceeEEecCCC-ceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEechh
Confidence            45667899999  99999999999998 9999999999998765 45999999999999999999999999999999999


Q ss_pred             cceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeE
Q 014475          112 GRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSAT  191 (424)
Q Consensus       112 ~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~  191 (424)
                      .+.++.+.+|-..|.|+..+|.-..|++|+.|..+++||+++           ...+..+.+|..+|..+.+.+..  ..
T Consensus       225 nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRt-----------r~~V~~l~GH~~~V~~V~~~~~d--pq  291 (460)
T KOG0285|consen  225 NKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRT-----------RASVHVLSGHTNPVASVMCQPTD--PQ  291 (460)
T ss_pred             hhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecc-----------cceEEEecCCCCcceeEEeecCC--Cc
Confidence            999999999999999999999999999999999999999966           55688899999999999999877  78


Q ss_pred             EEEEeCCCcEEEEecCCCceeeeee-cCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCc
Q 014475          192 IVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSK  270 (424)
Q Consensus       192 l~~~~~d~~v~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~  270 (424)
                      +++|+.|++|++||++.++....+. |...+.+++.+|....|++++.| .|+.|++..+         ..+..+.+|..
T Consensus       292 vit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~d-nik~w~~p~g---------~f~~nlsgh~~  361 (460)
T KOG0285|consen  292 VITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPD-NIKQWKLPEG---------EFLQNLSGHNA  361 (460)
T ss_pred             eEEecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCc-cceeccCCcc---------chhhccccccc
Confidence            9999999999999999999888777 78899999999999999999877 4999999987         45666889999


Q ss_pred             CeEEEEecCCCEEEEeCCCCcEEEEeCCCCcEEEEEe--------ccCCCeeEEEEEecCceeeeccCCCceeeccCCCC
Q 014475          271 AVTCLAYSTGDLLISGSEDGMVRVWDPITHNIVRMFR--------LAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGS  342 (424)
Q Consensus       271 ~i~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~--------~~~~~v~~l~~s~~~~~l~~~~~d~~i~iw~~~~~  342 (424)
                      -|++++.+.+.++++|+++|.+.+||.++|...+...        .....|.+.+|...|..|++|..|.+|++|.-...
T Consensus       362 iintl~~nsD~v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~eadKtIk~~keDe~  441 (460)
T KOG0285|consen  362 IINTLSVNSDGVLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGEADKTIKMYKEDEH  441 (460)
T ss_pred             eeeeeeeccCceEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeecccCceEEeccCCcceEEEecccc
Confidence            9999999889999999999999999999987665542        12346899999999999999999999999987633

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=4.4e-39  Score=286.80  Aligned_cols=318  Identities=20%  Similarity=0.323  Sum_probs=272.8

Q ss_pred             EEEeecCCCCCceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCceeee-ecCCC
Q 014475            3 LLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVK-SLPAE   81 (424)
Q Consensus         3 ~~lat~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~-~~~~~   81 (424)
                      ++||+|- ..|...|+++..-.+++.+.-..   ..|..+.  |+..|.++|.++..=|.+.||++.......+ ..|..
T Consensus       278 ~~lvvgF-ssG~f~LyelP~f~lih~LSis~---~~I~t~~--~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~  351 (893)
T KOG0291|consen  278 NLLVVGF-SSGEFGLYELPDFNLIHSLSISD---QKILTVS--FNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSD  351 (893)
T ss_pred             eEEEEEe-cCCeeEEEecCCceEEEEeeccc---ceeeEEE--ecccCCEEEEcCCccceEEEEEeeccceeeecccccc
Confidence            6799999 99999999999999998876433   5577777  9999999999987668999999999887765 45899


Q ss_pred             CeeEEEECCCCCEEEEecCCCcEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhccc
Q 014475           82 PIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQ  161 (424)
Q Consensus        82 ~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~  161 (424)
                      .+++++++|||+++|+|+.||.|+|||..++-+..++..|...|+.++|+..++.+++++-||+|+.||+..        
T Consensus       352 ~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkR--------  423 (893)
T KOG0291|consen  352 RITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKR--------  423 (893)
T ss_pred             ceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecc--------
Confidence            999999999999999999999999999999999999999999999999999999999999999999999954        


Q ss_pred             ccccceEEeecC-CcCceeEEEEEEcCceeEEEEEeCCC-cEEEEecCCCceeeeee-cCcceeEEEECCCCCEEEEEeC
Q 014475          162 RASHLYLHSFTG-HTLRITDIVIGYGGVSATIVSASEDR-TCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYAGSR  238 (424)
Q Consensus       162 ~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~l~~~~~d~-~v~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~  238 (424)
                         ....+++.. ......|++..|.|  ..+++|+.|. .|.+|++++|+.+..+. |.++|.+++|+|.+..|++++.
T Consensus       424 ---YrNfRTft~P~p~QfscvavD~sG--elV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SW  498 (893)
T KOG0291|consen  424 ---YRNFRTFTSPEPIQFSCVAVDPSG--ELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSW  498 (893)
T ss_pred             ---cceeeeecCCCceeeeEEEEcCCC--CEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccc
Confidence               333444443 23445677777777  7888888876 49999999999999998 9999999999999999999999


Q ss_pred             CCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCCCcEEEEEe----------
Q 014475          239 DGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFR----------  307 (424)
Q Consensus       239 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~~~~~~----------  307 (424)
                      |.+|++||+-...        ..+.++ .+...+..++|.| |+.|+++..||.|.+||.+.+..+..+.          
T Consensus       499 DkTVRiW~if~s~--------~~vEtl-~i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~  569 (893)
T KOG0291|consen  499 DKTVRIWDIFSSS--------GTVETL-EIRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRK  569 (893)
T ss_pred             cceEEEEEeeccC--------ceeeeE-eeccceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccccchhhcccccc
Confidence            9999999997753        223333 4667899999999 9999999999999999998776654433          


Q ss_pred             ----------ccCCCeeEEEEEecCceeeeccCCCceeeccCCCCCCCCCc
Q 014475          308 ----------LAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGSQLPPPL  348 (424)
Q Consensus       308 ----------~~~~~v~~l~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~  348 (424)
                                ......+.+++++||..|++|+....|+++++.++.+.+.+
T Consensus       570 ~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~v~~~vllkkf  620 (893)
T KOG0291|consen  570 ETDRITAENSAKGKTFTTICYSADGKCILAGGESNSICIYDVPEGVLLKKF  620 (893)
T ss_pred             ccceeehhhcccCCceEEEEEcCCCCEEEecCCcccEEEEECchhheeeeE
Confidence                      12247899999999999999999999999999988776544

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=4.4e-40  Score=269.74  Aligned_cols=280  Identities=21%  Similarity=0.328  Sum_probs=256.8

Q ss_pred             CCCceEEecceeecCCCccccCCCCceeEEEEECCCCcee-eeecCCCCeeEEEECCCCCEEEEecCCCcEEEEEccC-c
Q 014475           35 PPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVE-VKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVAS-G  112 (424)
Q Consensus        35 ~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~-~  112 (424)
                      +...|+.+-  |+|+-..+++++.+ ++|++||..+++.. ....|.+.|..++|+..|+++++++.|=.+.+||.++ .
T Consensus       107 ~r~~vt~v~--~hp~~~~v~~as~d-~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~  183 (406)
T KOG0295|consen  107 HRSSVTRVI--FHPSEALVVSASED-ATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFF  183 (406)
T ss_pred             cccceeeee--eccCceEEEEecCC-ceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccchhheeHHHHH
Confidence            445567766  99999999999887 99999999999875 3467888999999999999999999998899999987 5


Q ss_pred             ceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEE
Q 014475          113 RLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATI  192 (424)
Q Consensus       113 ~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l  192 (424)
                      ++++.+.+|...|.+++|-|.|.++++++.|.+|+.|++.+           ..+++++.+|...+..+..+.+|  ..+
T Consensus       184 ~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~t-----------g~cv~t~~~h~ewvr~v~v~~DG--ti~  250 (406)
T KOG0295|consen  184 RCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDT-----------GYCVKTFPGHSEWVRMVRVNQDG--TII  250 (406)
T ss_pred             HHHHHhcCcccceeeEEEEecCCeeeecccccceeEEeccc-----------ceeEEeccCchHhEEEEEecCCe--eEE
Confidence            77888899999999999999999999999999999999966           44688999999999999998888  999


Q ss_pred             EEEeCCCcEEEEecCCCceeeeee-cCcceeEEEECCC---------------CCEEEEEeCCCcEEEEEcCCCCCCCCC
Q 014475          193 VSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPA---------------EHVFYAGSRDGSIYIAALNAESPSTSS  256 (424)
Q Consensus       193 ~~~~~d~~v~iwd~~~~~~~~~~~-~~~~i~~~~~~~~---------------~~~l~~~~~dg~i~i~d~~~~~~~~~~  256 (424)
                      ++++.|.++++|-+.++++...+. |..++.+++|.|.               +.++.+++.|++|++||+.++      
T Consensus       251 As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg------  324 (406)
T KOG0295|consen  251 ASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTG------  324 (406)
T ss_pred             EecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCC------
Confidence            999999999999999998877776 8889999999763               258999999999999999997      


Q ss_pred             cCceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCCCcEEEEEeccCCCeeEEEEEecCceeeeccCCCcee
Q 014475          257 YGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHT  335 (424)
Q Consensus       257 ~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~d~~i~  335 (424)
                         .++.++.+|...|..++|+| |+||+++.+|+++++||++++++.+++..|..-|+++.|+.+..++++|+-|.+++
T Consensus       325 ---~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~K  401 (406)
T KOG0295|consen  325 ---MCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVK  401 (406)
T ss_pred             ---eEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecCCCCceEEeccccceee
Confidence               78999999999999999999 99999999999999999999999999999999999999999999999999999999


Q ss_pred             eccC
Q 014475          336 SSRR  339 (424)
Q Consensus       336 iw~~  339 (424)
                      +|.-
T Consensus       402 vwEc  405 (406)
T KOG0295|consen  402 VWEC  405 (406)
T ss_pred             eeec
Confidence            9974

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=1.2e-38  Score=284.02  Aligned_cols=314  Identities=25%  Similarity=0.403  Sum_probs=270.7

Q ss_pred             EEeecCCCCCceEEEeCCC-----------------------Cce-----E-EEe--eCCCCCCCceEEecceeecCCCc
Q 014475            4 LIASSSVADTGIGCWDLES-----------------------GAE-----Q-LRY--KSCASPPHGLACVGQRFLASSQL   52 (424)
Q Consensus         4 ~lat~~~~dg~i~vwd~~~-----------------------~~~-----~-~~~--~~~~~~~~~v~~~~~~~~~~~~~   52 (424)
                      -|.|-+ .||.+.+|....                       ++.     . ...  .........|++.+  |++..+.
T Consensus       203 ~l~tvs-kdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~--fH~~t~~  279 (893)
T KOG0291|consen  203 DLYTVS-KDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAA--FHKGTNL  279 (893)
T ss_pred             eEEEEe-cCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeee--ccCCceE
Confidence            467788 999999998761                       111     0 000  11122336678888  9999999


Q ss_pred             cccCCCCceeEEEEECCCCceeee-ecCCCCeeEEEECCCCCEEEEecCC-CcEEEEEccCcceeeeeccccCCeEEEEE
Q 014475           53 REQPSASSGSILYWSWSKPQVEVK-SLPAEPIKPIAANSHGTYIAGGGQS-GDIYMWEVASGRLLKKWHAHYRAVTCLVF  130 (424)
Q Consensus        53 l~~~~~~~g~i~vwd~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~d-g~v~iwd~~~~~~~~~~~~~~~~i~~~~~  130 (424)
                      |+++-.. |...++.+........ .....+|..++|+..|.+||.|+.. |++.||+.++...+...++|...++++++
T Consensus       280 lvvgFss-G~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~Y  358 (893)
T KOG0291|consen  280 LVVGFSS-GEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAY  358 (893)
T ss_pred             EEEEecC-CeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEE
Confidence            9999887 9999999988776543 4456899999999999999998765 89999999999999999999999999999


Q ss_pred             ccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCc
Q 014475          131 SEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGR  210 (424)
Q Consensus       131 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~  210 (424)
                      +|||+++++|+.||.|+|||..           ...+..++..|.+.|+.+.|+..+  +.+++++-||+|+.||+...+
T Consensus       359 SpDgq~iaTG~eDgKVKvWn~~-----------SgfC~vTFteHts~Vt~v~f~~~g--~~llssSLDGtVRAwDlkRYr  425 (893)
T KOG0291|consen  359 SPDGQLIATGAEDGKVKVWNTQ-----------SGFCFVTFTEHTSGVTAVQFTARG--NVLLSSSLDGTVRAWDLKRYR  425 (893)
T ss_pred             CCCCcEEEeccCCCcEEEEecc-----------CceEEEEeccCCCceEEEEEEecC--CEEEEeecCCeEEeeeecccc
Confidence            9999999999999999999994           466889999999999999999999  899999999999999999999


Q ss_pred             eeeeeecCc--ceeEEEECCCCCEEEEEeCCC-cEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEe
Q 014475          211 LLRNIVFPS--VIDAIALDPAEHVFYAGSRDG-SIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISG  286 (424)
Q Consensus       211 ~~~~~~~~~--~i~~~~~~~~~~~l~~~~~dg-~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~  286 (424)
                      ..+++..+.  ...|++..|.|..+.+|+.|. .|++|+++++         +.+..+.+|++||.+++|+| +..|+++
T Consensus       426 NfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTG---------qllDiLsGHEgPVs~l~f~~~~~~LaS~  496 (893)
T KOG0291|consen  426 NFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTG---------QLLDILSGHEGPVSGLSFSPDGSLLASG  496 (893)
T ss_pred             eeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecC---------eeeehhcCCCCcceeeEEccccCeEEec
Confidence            999998655  456888899999999999887 7999999998         77889999999999999999 9999999


Q ss_pred             CCCCcEEEEeCCCC-cEEEEEeccCCCeeEEEEEecCceeeeccCCCceeeccCCCCCC
Q 014475          287 SEDGMVRVWDPITH-NIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGSQL  344 (424)
Q Consensus       287 ~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~d~~i~iw~~~~~~~  344 (424)
                      +.|.+|++||+-.. ..+.++. +...+..++|+|+|+.|++++.||.|.+||......
T Consensus       497 SWDkTVRiW~if~s~~~vEtl~-i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q  554 (893)
T KOG0291|consen  497 SWDKTVRIWDIFSSSGTVETLE-IRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQ  554 (893)
T ss_pred             cccceEEEEEeeccCceeeeEe-eccceeEEEEcCCCCeEEEEEecceEEEEEhhhcee
Confidence            99999999998765 3455555 678899999999999999999999999999975543

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=7.6e-39  Score=253.63  Aligned_cols=273  Identities=22%  Similarity=0.353  Sum_probs=225.6

Q ss_pred             EEEeecCCCCCceEEEeCCC-----CceEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCcee-ee
Q 014475            3 LLIASSSVADTGIGCWDLES-----GAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVE-VK   76 (424)
Q Consensus         3 ~~lat~~~~dg~i~vwd~~~-----~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~-~~   76 (424)
                      .+|.+++ .|.++.+|++.+     |..++.+++|.   ..|.-+.  .+++|++.++++.| +++++||+.+++.. ..
T Consensus        29 ~~l~sas-rDk~ii~W~L~~dd~~~G~~~r~~~GHs---H~v~dv~--~s~dg~~alS~swD-~~lrlWDl~~g~~t~~f  101 (315)
T KOG0279|consen   29 DILVSAS-RDKTIIVWKLTSDDIKYGVPVRRLTGHS---HFVSDVV--LSSDGNFALSASWD-GTLRLWDLATGESTRRF  101 (315)
T ss_pred             ceEEEcc-cceEEEEEEeccCccccCceeeeeeccc---eEecceE--EccCCceEEecccc-ceEEEEEecCCcEEEEE
Confidence            3578889 999999999754     66677777654   5566666  89999999999998 99999999997655 44


Q ss_pred             ecCCCCeeEEEECCCCCEEEEecCCCcEEEEEccCcceeeeeccc--cCCeEEEEEccC--CcEEEEeeCCCcEEEEeCC
Q 014475           77 SLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAH--YRAVTCLVFSED--GSFLISGSEDGCVRIWSLL  152 (424)
Q Consensus        77 ~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~--~~~i~~~~~~~~--~~~l~s~~~dg~i~iwd~~  152 (424)
                      ..|...|.+++|+||.+.+++|+.|.+|++|++.. .+..++..+  .+.|+|+.|+|+  ...|++++.|++|++||++
T Consensus       102 ~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g-~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~  180 (315)
T KOG0279|consen  102 VGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLG-VCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLR  180 (315)
T ss_pred             EecCCceEEEEecCCCceeecCCCcceeeeeeecc-cEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccC
Confidence            67999999999999999999999999999999754 444444333  789999999997  6789999999999999995


Q ss_pred             cccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeeecCcceeEEEECCCCCE
Q 014475          153 TVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHV  232 (424)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~  232 (424)
                      +           .+....+.+|.+.++.++++|+|  ..+++|+.||.+.+||++.++.+..+.+...|.+++|+|+...
T Consensus       181 ~-----------~~l~~~~~gh~~~v~t~~vSpDG--slcasGgkdg~~~LwdL~~~k~lysl~a~~~v~sl~fspnryw  247 (315)
T KOG0279|consen  181 N-----------CQLRTTFIGHSGYVNTVTVSPDG--SLCASGGKDGEAMLWDLNEGKNLYSLEAFDIVNSLCFSPNRYW  247 (315)
T ss_pred             C-----------cchhhccccccccEEEEEECCCC--CEEecCCCCceEEEEEccCCceeEeccCCCeEeeEEecCCcee
Confidence            4           55667788999999999999999  8999999999999999999999999999999999999999888


Q ss_pred             EEEEeCCCcEEEEEcCCCCCCCCCcCceeee-eecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCC
Q 014475          233 FYAGSRDGSIYIAALNAESPSTSSYGMHIIG-SLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPI  298 (424)
Q Consensus       233 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~  298 (424)
                      |+.+... .|+|||+........... .... ..+.......+++|++ |..|++|-.|+.|++|.+.
T Consensus       248 L~~at~~-sIkIwdl~~~~~v~~l~~-d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~qv~  313 (315)
T KOG0279|consen  248 LCAATAT-SIKIWDLESKAVVEELKL-DGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQVA  313 (315)
T ss_pred             EeeccCC-ceEEEeccchhhhhhccc-cccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEee
Confidence            8777655 499999998753321110 1111 1222234456789999 9999999999999999875

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=2e-40  Score=297.48  Aligned_cols=271  Identities=25%  Similarity=0.380  Sum_probs=235.5

Q ss_pred             CceEEecceeecCCCccccCCCCceeEEEEECCCCceeeeecCCCCeeEEEECCCCCEEEEecCCCcEEEEEccCcceee
Q 014475           37 HGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLK  116 (424)
Q Consensus        37 ~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~  116 (424)
                      ..+.|..  |++++.++|.+-.| ..|++|.+...+..... +...         ...+=+.+.|-.+.+.|..+.....
T Consensus       379 ~~v~ca~--fSddssmlA~Gf~d-S~i~~~Sl~p~kl~~lk-~~~~---------l~~~d~~sad~~~~~~D~~~~~~~~  445 (707)
T KOG0263|consen  379 QGVTCAE--FSDDSSMLACGFVD-SSVRVWSLTPKKLKKLK-DASD---------LSNIDTESADVDVDMLDDDSSGTSR  445 (707)
T ss_pred             CcceeEe--ecCCcchhhccccc-cEEEEEecchhhhcccc-chhh---------hccccccccchhhhhccccCCceeE
Confidence            5677888  99999877777776 89999988754322111 1111         1122233444456777777777777


Q ss_pred             eeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEe
Q 014475          117 KWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSAS  196 (424)
Q Consensus       117 ~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~  196 (424)
                      ++.+|.++|..+.|+|+.++|++++.|+++|+|.+.+           ...+..+.+|..+|+++.|+|.|  .+++|++
T Consensus       446 ~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t-----------~s~~V~y~GH~~PVwdV~F~P~G--yYFatas  512 (707)
T KOG0263|consen  446 TLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDT-----------WSCLVIYKGHLAPVWDVQFAPRG--YYFATAS  512 (707)
T ss_pred             EeecCCCceeeeeecccccceeeccCCcceeeeeccc-----------ceeEEEecCCCcceeeEEecCCc--eEEEecC
Confidence            8999999999999999999999999999999999955           55677888999999999999998  9999999


Q ss_pred             CCCcEEEEecCCCceeeeee-cCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEE
Q 014475          197 EDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCL  275 (424)
Q Consensus       197 ~d~~v~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  275 (424)
                      .|++.++|......+++.+. |-+.+.|+.|+|+..++++|+.|.++++||..++         ..+..+.+|.++|+++
T Consensus       513 ~D~tArLWs~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G---------~~VRiF~GH~~~V~al  583 (707)
T KOG0263|consen  513 HDQTARLWSTDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTG---------NSVRIFTGHKGPVTAL  583 (707)
T ss_pred             CCceeeeeecccCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCC---------cEEEEecCCCCceEEE
Confidence            99999999999999988887 8899999999999999999999999999999998         5688899999999999


Q ss_pred             EecC-CCEEEEeCCCCcEEEEeCCCCcEEEEEeccCCCeeEEEEEecCceeeeccCCCceeeccCCCC
Q 014475          276 AYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGS  342 (424)
Q Consensus       276 ~~~~-~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~d~~i~iw~~~~~  342 (424)
                      +|+| |++|++|+.||.|++||+.+++++..+.+|.+.|.++.|+.+|..||+|+.|..|++||+...
T Consensus       584 ~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~  651 (707)
T KOG0263|consen  584 AFSPCGRYLASGDEDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKV  651 (707)
T ss_pred             EEcCCCceEeecccCCcEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchhh
Confidence            9999 999999999999999999999999999999999999999999999999999999999998744

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=100.00  E-value=5.5e-38  Score=269.07  Aligned_cols=320  Identities=16%  Similarity=0.203  Sum_probs=255.3

Q ss_pred             EEEeecCCCCCceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCceeeee----c
Q 014475            3 LLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKS----L   78 (424)
Q Consensus         3 ~~lat~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~~----~   78 (424)
                      .+++|++ .|++|.+|+=.   +.+--..+..|..-|.|+.  |+|||.++++++.| |+|.+||=.+++.....    .
T Consensus       161 fRi~T~s-dDn~v~ffeGP---PFKFk~s~r~HskFV~~VR--ysPDG~~Fat~gsD-gki~iyDGktge~vg~l~~~~a  233 (603)
T KOG0318|consen  161 FRIATGS-DDNTVAFFEGP---PFKFKSSFREHSKFVNCVR--YSPDGSRFATAGSD-GKIYIYDGKTGEKVGELEDSDA  233 (603)
T ss_pred             eEEEecc-CCCeEEEeeCC---CeeeeecccccccceeeEE--ECCCCCeEEEecCC-ccEEEEcCCCccEEEEecCCCC
Confidence            5789999 99999999944   4433334445667788888  99999999999998 99999998888766433    5


Q ss_pred             CCCCeeEEEECCCCCEEEEecCCCcEEEEEccCcceeee-----------------------------------------
Q 014475           79 PAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKK-----------------------------------------  117 (424)
Q Consensus        79 ~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~-----------------------------------------  117 (424)
                      |.+.|.+++|+||++.+++++.|.+++|||+.+.+++++                                         
T Consensus       234 HkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~  313 (603)
T KOG0318|consen  234 HKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVL  313 (603)
T ss_pred             ccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChh
Confidence            899999999999999999999999999999977644333                                         


Q ss_pred             --eccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhccccc--------------------------------
Q 014475          118 --WHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRA--------------------------------  163 (424)
Q Consensus       118 --~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--------------------------------  163 (424)
                        +.+|...|+++..+|++++|++|+.||.|.-|+..++.........                                
T Consensus       314 ~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~  393 (603)
T KOG0318|consen  314 KVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKD  393 (603)
T ss_pred             heecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEeccc
Confidence              3479999999999999999999999999999999775433110000                                


Q ss_pred             -------------ccce-----------------EEeecC--------CcCceeEEEEEEcCceeEEEEEeCCCcEEEEe
Q 014475          164 -------------SHLY-----------------LHSFTG--------HTLRITDIVIGYGGVSATIVSASEDRTCKVWS  205 (424)
Q Consensus       164 -------------~~~~-----------------~~~~~~--------~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd  205 (424)
                                   ++..                 +..++.        -.-...+++++|++  ..++.|+.|+.|++|.
T Consensus       394 ~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~--~~vaVGG~Dgkvhvys  471 (603)
T KOG0318|consen  394 NGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDG--SEVAVGGQDGKVHVYS  471 (603)
T ss_pred             CcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCC--CEEEEecccceEEEEE
Confidence                         0000                 000010        11123566778888  8999999999999999


Q ss_pred             cCCCcee---eeeecCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CC
Q 014475          206 LLKGRLL---RNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GD  281 (424)
Q Consensus       206 ~~~~~~~---~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~  281 (424)
                      +......   ..+.|.++|++++++|++.+|+++...+.+.+||..+..        .......-|...|.+++|+| ..
T Consensus       472 l~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~--------~~~~~w~FHtakI~~~aWsP~n~  543 (603)
T KOG0318|consen  472 LSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASRE--------VKTNRWAFHTAKINCVAWSPNNK  543 (603)
T ss_pred             ecCCcccceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCc--------eecceeeeeeeeEEEEEeCCCce
Confidence            9875533   344599999999999999999999999999999999875        22334445999999999999 99


Q ss_pred             EEEEeCCCCcEEEEeCCCCcE-EEEEeccCCCeeEEEEEecCceeeeccCCCceeeccCC
Q 014475          282 LLISGSEDGMVRVWDPITHNI-VRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRH  340 (424)
Q Consensus       282 ~l~t~~~dg~i~iwd~~~~~~-~~~~~~~~~~v~~l~~s~~~~~l~~~~~d~~i~iw~~~  340 (424)
                      ++|||+.|-.|.||+++.... +....+|...|+.+.|-. ...|++.+.|-.|++|++.
T Consensus       544 ~vATGSlDt~Viiysv~kP~~~i~iknAH~~gVn~v~wld-e~tvvSsG~Da~iK~W~v~  602 (603)
T KOG0318|consen  544 LVATGSLDTNVIIYSVKKPAKHIIIKNAHLGGVNSVAWLD-ESTVVSSGQDANIKVWNVT  602 (603)
T ss_pred             EEEeccccceEEEEEccChhhheEeccccccCceeEEEec-CceEEeccCcceeEEeccc
Confidence            999999999999999987543 444557888899999984 4688999999999999874

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=2.9e-38  Score=249.29  Aligned_cols=284  Identities=18%  Similarity=0.260  Sum_probs=240.4

Q ss_pred             eCCCCCCCceEEecceeecC-CCccccCCCCceeEEEEECCCC-ceeee----ecCCCCeeEEEECCCCCEEEEecCCCc
Q 014475           30 KSCASPPHGLACVGQRFLAS-SQLREQPSASSGSILYWSWSKP-QVEVK----SLPAEPIKPIAANSHGTYIAGGGQSGD  103 (424)
Q Consensus        30 ~~~~~~~~~v~~~~~~~~~~-~~~l~~~~~~~g~i~vwd~~~~-~~~~~----~~~~~~v~~~~~s~~~~~l~~~~~dg~  103 (424)
                      +.+.+|..++..++  |+|. |..||+++.| ..|++|+...+ ....+    ..|...|++++|+|.|++||+|+.|.+
T Consensus         8 ~~~~gh~~r~W~~a--whp~~g~ilAscg~D-k~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t   84 (312)
T KOG0645|consen    8 QKLSGHKDRVWSVA--WHPGKGVILASCGTD-KAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDAT   84 (312)
T ss_pred             EeecCCCCcEEEEE--eccCCceEEEeecCC-ceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccce
Confidence            34445667899999  9999 8899999998 99999999842 22222    358899999999999999999999999


Q ss_pred             EEEEEccCc--ceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEE
Q 014475          104 IYMWEVASG--RLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDI  181 (424)
Q Consensus       104 v~iwd~~~~--~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  181 (424)
                      +.||.-..+  +++..+.+|..+|.|++|+++|++||+++.|+.|-||.+..        .....+...++.|...|..+
T Consensus        85 ~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~de--------ddEfec~aVL~~HtqDVK~V  156 (312)
T KOG0645|consen   85 VVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDE--------DDEFECIAVLQEHTQDVKHV  156 (312)
T ss_pred             EEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecC--------CCcEEEEeeeccccccccEE
Confidence            999986644  67889999999999999999999999999999999999864        24566788899999999999


Q ss_pred             EEEEcCceeEEEEEeCCCcEEEEecC---CCceeeeee-cCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCc
Q 014475          182 VIGYGGVSATIVSASEDRTCKVWSLL---KGRLLRNIV-FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSY  257 (424)
Q Consensus       182 ~~~~~~~~~~l~~~~~d~~v~iwd~~---~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  257 (424)
                      .|+|..  .+|++++.|++|++|+-.   .-++...+. +...+.+++|+|.|..|++++.|++++||.....-      
T Consensus       157 ~WHPt~--dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~~------  228 (312)
T KOG0645|consen  157 IWHPTE--DLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTDL------  228 (312)
T ss_pred             EEcCCc--ceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccCc------
Confidence            999988  899999999999999866   335677776 77799999999999999999999999999876431      


Q ss_pred             CceeeeeecccCcCeEEEEecCCCEEEEeCCCCcEEEEeCCCC------cEE-EEEeccCCCeeEEEEEec-Cceeeecc
Q 014475          258 GMHIIGSLSDHSKAVTCLAYSTGDLLISGSEDGMVRVWDPITH------NIV-RMFRLAKGPVNNILVVRR-PLYLNLGS  329 (424)
Q Consensus       258 ~~~~~~~~~~~~~~i~~~~~~~~~~l~t~~~dg~i~iwd~~~~------~~~-~~~~~~~~~v~~l~~s~~-~~~l~~~~  329 (424)
                             ...|..++..+.|. ...|++++.|+.|++|.-...      +.+ ..-..|...|+++.|.|. ..+|++++
T Consensus       229 -------~~~~sr~~Y~v~W~-~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~  300 (312)
T KOG0645|consen  229 -------SGMHSRALYDVPWD-NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGG  300 (312)
T ss_pred             -------chhcccceEeeeec-ccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecC
Confidence                   12377889999998 789999999999999986542      111 123468889999999995 67999999


Q ss_pred             CCCceeeccCC
Q 014475          330 FSNPHTSSRRH  340 (424)
Q Consensus       330 ~d~~i~iw~~~  340 (424)
                      +||.+++|.+.
T Consensus       301 DDG~v~~W~l~  311 (312)
T KOG0645|consen  301 DDGIVNFWELE  311 (312)
T ss_pred             CCceEEEEEec
Confidence            99999999864

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=2.8e-38  Score=267.31  Aligned_cols=332  Identities=37%  Similarity=0.588  Sum_probs=272.6

Q ss_pred             CeEEEeecCCCCCc-eEEEeCCCCceEEEeeCC-CCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCceee-ee
Q 014475            1 MELLIASSSVADTG-IGCWDLESGAEQLRYKSC-ASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEV-KS   77 (424)
Q Consensus         1 ~e~~lat~~~~dg~-i~vwd~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~-~~   77 (424)
                      ||..+++.++.|-. +.+||+++|....++++. .....+...+.      +.+++++...-..|.+|.+....... ..
T Consensus         5 le~~~~sssS~d~~~~~~~dl~TGt~~~~ykg~~~a~~~sl~~l~------~~yllsaq~~rp~l~vw~i~k~~~~~q~~   78 (476)
T KOG0646|consen    5 LEGTVCSSSSFDPINCIVWDLRTGTSLLQYKGSYLAQAASLTALN------NEYLLSAQLKRPLLHVWEILKKDQVVQYI   78 (476)
T ss_pred             eeEEEEeccCCCCcceeEEecCCCceeEEecCcccccchhhhhhc------hhheeeecccCccccccccCchhhhhhhc
Confidence            57777776646655 999999999999999877 33333333332      36666665544799999998766554 55


Q ss_pred             cCCCCeeEEEECCCCCEEEEecCCCcEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccch
Q 014475           78 LPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEE  157 (424)
Q Consensus        78 ~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~  157 (424)
                      ..+++|.+++-+|+|.+|+.|+..|.|++|.+.+|.++..+.+|-..|+|+.|+.|+.+|++|+.||.|.+|++-+....
T Consensus        79 v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a  158 (476)
T KOG0646|consen   79 VLPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSA  158 (476)
T ss_pred             ccccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeeccc
Confidence            67899999999999999999999999999999999999999999999999999999999999999999999998654332


Q ss_pred             hcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeeecCcceeEEEECCCCCEEEEEe
Q 014475          158 CESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGS  237 (424)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  237 (424)
                      ..  .....+.+.+..|.-+|+++...+.+...++++++.|.++++||+..+.++..+..+..+.+++++|.++.+++|+
T Consensus       159 ~~--~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp~si~av~lDpae~~~yiGt  236 (476)
T KOG0646|consen  159 DN--DHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFPSSIKAVALDPAERVVYIGT  236 (476)
T ss_pred             cc--CCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEecCCcceeEEEcccccEEEecC
Confidence            22  2256678899999999999999998777899999999999999999999999999999999999999999999999


Q ss_pred             CCCcEEEEEcCCCCCCCC-------CcCceeeeeecccCc--CeEEEEecC-CCEEEEeCCCCcEEEEeCCCCcEEEEEe
Q 014475          238 RDGSIYIAALNAESPSTS-------SYGMHIIGSLSDHSK--AVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFR  307 (424)
Q Consensus       238 ~dg~i~i~d~~~~~~~~~-------~~~~~~~~~~~~~~~--~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~~~~~~  307 (424)
                      .+|.|.+.++........       ......+..+.+|.+  +|+|++.+- +..|++|+.||.|+|||+.+.++++++.
T Consensus       237 ~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~  316 (476)
T KOG0646|consen  237 EEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQ  316 (476)
T ss_pred             CcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHHHh
Confidence            999999998866542211       122344667788988  999999999 9999999999999999999999999998


Q ss_pred             ccCCCeeEEEEEecCceeeec-cCCCceeeccCC
Q 014475          308 LAKGPVNNILVVRRPLYLNLG-SFSNPHTSSRRH  340 (424)
Q Consensus       308 ~~~~~v~~l~~s~~~~~l~~~-~~d~~i~iw~~~  340 (424)
                      ...++|+.+.+.|-.+-...+ .....+..|++.
T Consensus       317 ~~kgpVtnL~i~~~~~~~~l~~~~~ps~~~~~lk  350 (476)
T KOG0646|consen  317 TSKGPVTNLQINPLERGIILFEHKQPSLPNPHLK  350 (476)
T ss_pred             hhccccceeEeeccccceecccccCccCCchHhh
Confidence            778999999997754444443 233334455443

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=7e-39  Score=284.97  Aligned_cols=313  Identities=17%  Similarity=0.224  Sum_probs=271.7

Q ss_pred             CCCceEEEeCCCCceEEEeeCCCCCCCceEEecceee-cCCCccccCCCCceeEEEEECCCCceeeeecCCCCeeEEEEC
Q 014475           11 ADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFL-ASSQLREQPSASSGSILYWSWSKPQVEVKSLPAEPIKPIAAN   89 (424)
Q Consensus        11 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~l~~~~~~~g~i~vwd~~~~~~~~~~~~~~~v~~~~~s   89 (424)
                      .|..+.++|.++.+..+.+-+..   +.|..+.  |. |..+.+++++.. +.+++++..+....+...|.+.|.++...
T Consensus       301 aeQnl~l~d~~~l~i~k~ivG~n---dEI~Dm~--~lG~e~~~laVATNs-~~lr~y~~~~~~c~ii~GH~e~vlSL~~~  374 (775)
T KOG0319|consen  301 AEQNLFLYDEDELTIVKQIVGYN---DEILDMK--FLGPEESHLAVATNS-PELRLYTLPTSYCQIIPGHTEAVLSLDVW  374 (775)
T ss_pred             ccceEEEEEccccEEehhhcCCc---hhheeee--ecCCccceEEEEeCC-CceEEEecCCCceEEEeCchhheeeeeec
Confidence            46899999999999988887655   4455554  44 788999999988 99999999999998889999999999977


Q ss_pred             CCCCEEEEecCCCcEEEEEccCc----ceeeeeccccCCeEEEEEccC-CcEEEEeeCCCcEEEEeCCcccchhcccccc
Q 014475           90 SHGTYIAGGGQSGDIYMWEVASG----RLLKKWHAHYRAVTCLVFSED-GSFLISGSEDGCVRIWSLLTVFEECESQRAS  164 (424)
Q Consensus        90 ~~~~~l~~~~~dg~v~iwd~~~~----~~~~~~~~~~~~i~~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~  164 (424)
                      .+|-+|++|+.|.++++|.++++    .++....+|...|.+++++.. ..+|+++|.|+++++|++....+...  ...
T Consensus       375 ~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~--~~~  452 (775)
T KOG0319|consen  375 SSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAF--PIV  452 (775)
T ss_pred             ccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccc--cce
Confidence            78899999999999999988544    345566889999999999763 46899999999999999976211110  111


Q ss_pred             cceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeee-cCcceeEEEECCCCCEEEEEeCCCcEE
Q 014475          165 HLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYAGSRDGSIY  243 (424)
Q Consensus       165 ~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~  243 (424)
                      .........|...|++++++|+.  ..++|||.|++.+||++........+. |...+.++.|+|..+.+++++.|++|+
T Consensus       453 ~~~~~t~~aHdKdIN~Vaia~nd--kLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvK  530 (775)
T KOG0319|consen  453 LTCRYTERAHDKDINCVAIAPND--KLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVK  530 (775)
T ss_pred             ehhhHHHHhhcccccceEecCCC--ceEEecccccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCceEE
Confidence            11112446799999999999998  999999999999999999888888888 999999999999999999999999999


Q ss_pred             EEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCCCcEEEEEeccCCCeeEEEEEecC
Q 014475          244 IAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRP  322 (424)
Q Consensus       244 i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~  322 (424)
                      ||.+.+.         .+++++.+|...|..+.|-. +..|++++.||.|++|+++++++++++..|...|++++.+|..
T Consensus       531 IW~is~f---------SClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD~H~DrvWaL~~~~~~  601 (775)
T KOG0319|consen  531 IWSISTF---------SCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLDAHNDRVWALSVSPLL  601 (775)
T ss_pred             EEEeccc---------eeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhhhccceeEEEeecCcc
Confidence            9999996         88999999999999999988 9999999999999999999999999999999999999999999


Q ss_pred             ceeeeccCCCceeeccCCCC
Q 014475          323 LYLNLGSFSNPHTSSRRHGS  342 (424)
Q Consensus       323 ~~l~~~~~d~~i~iw~~~~~  342 (424)
                      .++++|+.||.|.+|.=.+.
T Consensus       602 ~~~~tgg~Dg~i~~wkD~Te  621 (775)
T KOG0319|consen  602 DMFVTGGGDGRIIFWKDVTE  621 (775)
T ss_pred             ceeEecCCCeEEEEeecCcH
Confidence            99999999999999975443

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=3.8e-39  Score=268.33  Aligned_cols=287  Identities=15%  Similarity=0.246  Sum_probs=245.0

Q ss_pred             eeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCce----eeeecCCCCeeEEEECCCCCEEEEecCCCcE
Q 014475           29 YKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQV----EVKSLPAEPIKPIAANSHGTYIAGGGQSGDI  104 (424)
Q Consensus        29 ~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~----~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v  104 (424)
                      .+....|.+.|..+.  |+++|++||++++| .+..+|++.....    .....|..+|..+.||||.++|++++.+..+
T Consensus       217 ~qil~~htdEVWfl~--FS~nGkyLAsaSkD-~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~  293 (519)
T KOG0293|consen  217 WQILQDHTDEVWFLQ--FSHNGKYLASASKD-STAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVL  293 (519)
T ss_pred             hhhHhhCCCcEEEEE--EcCCCeeEeeccCC-ceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHhe
Confidence            334456778899999  99999999999998 9999999764332    2335689999999999999999999999999


Q ss_pred             EEEEccCcceeeeec-cccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecC-CcCceeEEE
Q 014475          105 YMWEVASGRLLKKWH-AHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTG-HTLRITDIV  182 (424)
Q Consensus       105 ~iwd~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~  182 (424)
                      .+||+.+|.....+. ++...+.+++|.|||..+++|+.|+.+..||+....            ...+++ ....|.+++
T Consensus       294 ~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~------------~~~W~gvr~~~v~dla  361 (519)
T KOG0293|consen  294 SLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNI------------LGNWEGVRDPKVHDLA  361 (519)
T ss_pred             eeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcch------------hhcccccccceeEEEE
Confidence            999999999887774 356889999999999999999999999999995421            222332 235689999


Q ss_pred             EEEcCceeEEEEEeCCCcEEEEecCCCceeeeeecCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceee
Q 014475          183 IGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHII  262 (424)
Q Consensus       183 ~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~  262 (424)
                      +.++|  +++++.+.|..+++++..+......+....+|++++.+.+++++++.-.+..+++||+...         ..+
T Consensus       362 it~Dg--k~vl~v~~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~---------~lv  430 (519)
T KOG0293|consen  362 ITYDG--KYVLLVTVDKKIRLYNREARVDRGLISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEEN---------KLV  430 (519)
T ss_pred             EcCCC--cEEEEEecccceeeechhhhhhhccccccCceeEEEEcCCCcEEEEEcccCeeEEeecchh---------hHH
Confidence            99999  8999999999999999988877777778899999999999999999999999999999964         566


Q ss_pred             eeecccCcC--eEEEEecC--CCEEEEeCCCCcEEEEeCCCCcEEEEEeccCCCeeEEEEEec-CceeeeccCCCceeec
Q 014475          263 GSLSDHSKA--VTCLAYST--GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRR-PLYLNLGSFSNPHTSS  337 (424)
Q Consensus       263 ~~~~~~~~~--i~~~~~~~--~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~-~~~l~~~~~d~~i~iw  337 (424)
                      ..+.+|...  +..-+|.-  ..++++|++|+.|+||+..+++++..+.+|...|++++|+|. ..++|+||+||+|+||
T Consensus       431 ~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIW  510 (519)
T KOG0293|consen  431 RKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIW  510 (519)
T ss_pred             HHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEe
Confidence            777777653  33445554  579999999999999999999999999999999999999995 5688999999999999


Q ss_pred             cCCC
Q 014475          338 RRHG  341 (424)
Q Consensus       338 ~~~~  341 (424)
                      ....
T Consensus       511 g~~~  514 (519)
T KOG0293|consen  511 GPSD  514 (519)
T ss_pred             cCCc
Confidence            8763

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=100.00  E-value=3.5e-38  Score=252.35  Aligned_cols=286  Identities=18%  Similarity=0.278  Sum_probs=247.1

Q ss_pred             CCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCc--eeeeecCCCCeeEEEECCCCCEEEEecCCCcEEEEE
Q 014475           31 SCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQ--VEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWE  108 (424)
Q Consensus        31 ~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~--~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd  108 (424)
                      ...+|...|..+.  |+|+|.++|++|.| ..|.+|++....  .-....|.+.|..+.|.+|++.+++++.|.+|+.||
T Consensus        42 ~l~gh~geI~~~~--F~P~gs~~aSgG~D-r~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD  118 (338)
T KOG0265|consen   42 LLPGHKGEIYTIK--FHPDGSCFASGGSD-RAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWD  118 (338)
T ss_pred             hcCCCcceEEEEE--ECCCCCeEeecCCc-ceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEe
Confidence            3445777888888  99999999999998 999999976543  234468999999999999999999999999999999


Q ss_pred             ccCcceeeeeccccCCeEEEEEcc-CCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcC
Q 014475          109 VASGRLLKKWHAHYRAVTCLVFSE-DGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGG  187 (424)
Q Consensus       109 ~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  187 (424)
                      .++|+.++.+++|...|+.+.-+. ...++.+++.||++++||+++           ...++++ ..+-+++++.|...+
T Consensus       119 ~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~-----------k~~~~t~-~~kyqltAv~f~d~s  186 (338)
T KOG0265|consen  119 AETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRK-----------KEAIKTF-ENKYQLTAVGFKDTS  186 (338)
T ss_pred             cccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecc-----------cchhhcc-ccceeEEEEEecccc
Confidence            999999999999999999998544 345677899999999999965           2223322 235678899998888


Q ss_pred             ceeEEEEEeCCCcEEEEecCCCceeeeee-cCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeec
Q 014475          188 VSATIVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLS  266 (424)
Q Consensus       188 ~~~~l~~~~~d~~v~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~  266 (424)
                        ..+.+|+-|+.|++||++.+.....+. |.++|+.+..+|+|.++.+-+.|.++++||++.-.+..     +++..+.
T Consensus       187 --~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~-----R~v~if~  259 (338)
T KOG0265|consen  187 --DQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQ-----RCVKIFQ  259 (338)
T ss_pred             --cceeeccccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCC-----ceEEEee
Confidence              899999999999999999999999888 89999999999999999999999999999998865432     4566666


Q ss_pred             ccC----cCeEEEEecC-CCEEEEeCCCCcEEEEeCCCCcEEEEEeccCCCeeEEEEEecCceeeeccCCCceeecc
Q 014475          267 DHS----KAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSR  338 (424)
Q Consensus       267 ~~~----~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~d~~i~iw~  338 (424)
                      +|.    .....++|+| +..+.+|+.|..+++||......+..+.+|.+.|.++.|+|...+|.+++.|.+|++=.
T Consensus       260 g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e~iils~~sdk~i~lge  336 (338)
T KOG0265|consen  260 GHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHPTEPIILSCSSDKTIYLGE  336 (338)
T ss_pred             cchhhhhhhcceeeccCCCCccccccccceEEEeecccccEEEEcCCcceeEEEeeecCCCcEEEEeccCceeEeec
Confidence            653    3456688999 89999999999999999999999999999999999999999999999999999998643

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=100.00  E-value=4.1e-37  Score=270.08  Aligned_cols=280  Identities=28%  Similarity=0.493  Sum_probs=248.9

Q ss_pred             CCCCceEEecceeecCCCccccCCCCceeEEEEECCCCcee-eeecCCCCeeEEEECCCCCEEEEecCCCcEEEEEccCc
Q 014475           34 SPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVE-VKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASG  112 (424)
Q Consensus        34 ~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~  112 (424)
                      +|...|.+++  |+|+++++++++.+ |.|.+|++.+.+.. ....|...+..+.|+|+++++++++.+|.|++||+.++
T Consensus         7 ~h~~~i~~~~--~~~~~~~l~~~~~~-g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~   83 (289)
T cd00200           7 GHTGGVTCVA--FSPDGKLLATGSGD-GTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETG   83 (289)
T ss_pred             ccCCCEEEEE--EcCCCCEEEEeecC-cEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcc
Confidence            3557799999  99999999999987 99999999877543 33557788999999999999999999999999999998


Q ss_pred             ceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEE
Q 014475          113 RLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATI  192 (424)
Q Consensus       113 ~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l  192 (424)
                      +....+..|...+.++.|+++++++++++.+|.+.+||+++           ......+..|...+.++.|++++  .++
T Consensus        84 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~-----------~~~~~~~~~~~~~i~~~~~~~~~--~~l  150 (289)
T cd00200          84 ECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVET-----------GKCLTTLRGHTDWVNSVAFSPDG--TFV  150 (289)
T ss_pred             cceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCC-----------cEEEEEeccCCCcEEEEEEcCcC--CEE
Confidence            88888889999999999999988888888899999999954           33455666888999999999986  788


Q ss_pred             EEEeCCCcEEEEecCCCceeeeee-cCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcC
Q 014475          193 VSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKA  271 (424)
Q Consensus       193 ~~~~~d~~v~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~  271 (424)
                      ++++.++.+++||+++++....+. +...+.+++|+|+++.+++++.++.+++||++..         ..+..+..|...
T Consensus       151 ~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~---------~~~~~~~~~~~~  221 (289)
T cd00200         151 ASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTG---------KCLGTLRGHENG  221 (289)
T ss_pred             EEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCC---------ceecchhhcCCc
Confidence            888889999999999888887777 6668999999999999999999999999999875         445566678889


Q ss_pred             eEEEEecC-CCEEEEeCCCCcEEEEeCCCCcEEEEEeccCCCeeEEEEEecCceeeeccCCCceeecc
Q 014475          272 VTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSR  338 (424)
Q Consensus       272 i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~d~~i~iw~  338 (424)
                      +.++.|+| +.++++++.||.|++||+.+++.+..+..|...|.+++|+|++++|++++.|+.+++|+
T Consensus       222 i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~  289 (289)
T cd00200         222 VNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD  289 (289)
T ss_pred             eEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEccccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence            99999999 88888888899999999999999999999999999999999999999999999999996

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.8e-38  Score=260.32  Aligned_cols=269  Identities=22%  Similarity=0.336  Sum_probs=242.1

Q ss_pred             eEEEeecCCCCCceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCc--eeeeecC
Q 014475            2 ELLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQ--VEVKSLP   79 (424)
Q Consensus         2 e~~lat~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~--~~~~~~~   79 (424)
                      +.++|+++ .|++|++||.++|+....+++|.   +++..++  |+..|+++++++.| =.+++||.++..  ......|
T Consensus       120 ~~~v~~as-~d~tikv~D~~tg~~e~~LrGHt---~sv~di~--~~a~Gk~l~tcSsD-l~~~LWd~~~~~~c~ks~~gh  192 (406)
T KOG0295|consen  120 EALVVSAS-EDATIKVFDTETGELERSLRGHT---DSVFDIS--FDASGKYLATCSSD-LSAKLWDFDTFFRCIKSLIGH  192 (406)
T ss_pred             ceEEEEec-CCceEEEEEccchhhhhhhhccc---cceeEEE--EecCccEEEecCCc-cchhheeHHHHHHHHHHhcCc
Confidence            45788999 99999999999999988888766   4577777  99999999999998 779999998743  2344678


Q ss_pred             CCCeeEEEECCCCCEEEEecCCCcEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhc
Q 014475           80 AEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECE  159 (424)
Q Consensus        80 ~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~  159 (424)
                      ...|.++.|-|.|.++++++.|.+|+.|++.++.++.++.+|...|..+..+.||..+++++.|.+|++|-+.+      
T Consensus       193 ~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t------  266 (406)
T KOG0295|consen  193 EHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVAT------  266 (406)
T ss_pred             ccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEecc------
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999955      


Q ss_pred             ccccccceEEeecCCcCceeEEEEEEcC-------------ceeEEEEEeCCCcEEEEecCCCceeeeee-cCcceeEEE
Q 014475          160 SQRASHLYLHSFTGHTLRITDIVIGYGG-------------VSATIVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIA  225 (424)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~-------------~~~~l~~~~~d~~v~iwd~~~~~~~~~~~-~~~~i~~~~  225 (424)
                           ..+...+..|+.+|.+++|.|..             .+.++.+++.|++|++||+.++.++.++. |...|..++
T Consensus       267 -----~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~a  341 (406)
T KOG0295|consen  267 -----KQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVA  341 (406)
T ss_pred             -----chhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccceeeeeE
Confidence                 33455678899999999997632             12589999999999999999999999988 999999999


Q ss_pred             ECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeC
Q 014475          226 LDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDP  297 (424)
Q Consensus       226 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~  297 (424)
                      |+|.|++|+++.+|+++++||+++.         ++...+..|+.-++++.|+. ..+++||+-|.++++|.-
T Consensus       342 f~p~Gkyi~ScaDDktlrvwdl~~~---------~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwEc  405 (406)
T KOG0295|consen  342 FSPGGKYILSCADDKTLRVWDLKNL---------QCMKTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC  405 (406)
T ss_pred             EcCCCeEEEEEecCCcEEEEEeccc---------eeeeccCCCcceeEEEecCCCCceEEeccccceeeeeec
Confidence            9999999999999999999999997         77888889999999999998 889999999999999974

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=7.7e-38  Score=288.02  Aligned_cols=280  Identities=27%  Similarity=0.440  Sum_probs=247.4

Q ss_pred             CCceEEecceeecCCCccccCCCCceeEEEEECCCCc--ee-eeecCCCCeeEEEECCCCCEEEEecCCCcEEEEEc-cC
Q 014475           36 PHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQ--VE-VKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEV-AS  111 (424)
Q Consensus        36 ~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~--~~-~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~-~~  111 (424)
                      ...+.++.  |+++|+.+++++.+ +.+++|+....+  .. ....|...|..++|+|+++++++++.|++|+|||+ ..
T Consensus       159 ~~sv~~~~--fs~~g~~l~~~~~~-~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~  235 (456)
T KOG0266|consen  159 CPSVTCVD--FSPDGRALAAASSD-GLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDD  235 (456)
T ss_pred             cCceEEEE--EcCCCCeEEEccCC-CcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCC
Confidence            57788888  99999999999888 999999996655  22 22568899999999999999999999999999999 55


Q ss_pred             cceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeE
Q 014475          112 GRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSAT  191 (424)
Q Consensus       112 ~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~  191 (424)
                      +..++++++|...|++++|+|+++++++|+.|++|++||+++           ..+...+.+|...|++++|++++  ..
T Consensus       236 ~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~-----------~~~~~~l~~hs~~is~~~f~~d~--~~  302 (456)
T KOG0266|consen  236 GRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRT-----------GECVRKLKGHSDGISGLAFSPDG--NL  302 (456)
T ss_pred             CeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccC-----------CeEEEeeeccCCceEEEEECCCC--CE
Confidence            588999999999999999999999999999999999999954           55788899999999999999999  89


Q ss_pred             EEEEeCCCcEEEEecCCCc--eeeeee-cCc--ceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeec
Q 014475          192 IVSASEDRTCKVWSLLKGR--LLRNIV-FPS--VIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLS  266 (424)
Q Consensus       192 l~~~~~d~~v~iwd~~~~~--~~~~~~-~~~--~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~  266 (424)
                      |++++.|+.|++||+.++.  +...+. +..  ++++++|+|++.++++++.|+.+++||++..         .......
T Consensus       303 l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~---------~~~~~~~  373 (456)
T KOG0266|consen  303 LVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSG---------KSVGTYT  373 (456)
T ss_pred             EEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCC---------cceeeec
Confidence            9999999999999999998  445554 222  6899999999999999999999999999986         4566677


Q ss_pred             ccCcCe---EEEEecC-CCEEEEeCCCCcEEEEeCCCCcEEEEEecc-CCCeeEEEEEecCceeeecc--CCCceeeccC
Q 014475          267 DHSKAV---TCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLA-KGPVNNILVVRRPLYLNLGS--FSNPHTSSRR  339 (424)
Q Consensus       267 ~~~~~i---~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~-~~~v~~l~~s~~~~~l~~~~--~d~~i~iw~~  339 (424)
                      +|...+   .+...++ +.++++|+.|+.|++||+.++..+..+.+| ...+..+.++|...++++++  .|+.+++|..
T Consensus       374 ~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~  453 (456)
T KOG0266|consen  374 GHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHSKAAVSDLSSHPTENLIASSSFEGDGLIRLWKY  453 (456)
T ss_pred             ccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCCCCceeccccCCCcCeeeecCcCCCceEEEecC
Confidence            776643   3334455 899999999999999999999999999999 89999999999999999998  7889999986


Q ss_pred             C
Q 014475          340 H  340 (424)
Q Consensus       340 ~  340 (424)
                      .
T Consensus       454 ~  454 (456)
T KOG0266|consen  454 D  454 (456)
T ss_pred             C
Confidence            5

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=100.00  E-value=9.2e-39  Score=260.67  Aligned_cols=284  Identities=19%  Similarity=0.317  Sum_probs=244.8

Q ss_pred             EEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCcee-eeecCCCCeeEEEECCCCCEEEEecCCCcE
Q 014475           26 QLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVE-VKSLPAEPIKPIAANSHGTYIAGGGQSGDI  104 (424)
Q Consensus        26 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v  104 (424)
                      +.++........+|.|+.    .|...+++|..| ++|++||.++.++. ...+|.+.|.|+.|.  .+.+++|+.|.+|
T Consensus       187 ~~rinc~Se~skgVYClQ----YDD~kiVSGlrD-nTikiWD~n~~~c~~~L~GHtGSVLCLqyd--~rviisGSSDsTv  259 (499)
T KOG0281|consen  187 LQRINCRSENSKGVYCLQ----YDDEKIVSGLRD-NTIKIWDKNSLECLKILTGHTGSVLCLQYD--ERVIVSGSSDSTV  259 (499)
T ss_pred             eeeecCCcccCCceEEEE----ecchhhhccccc-CceEEeccccHHHHHhhhcCCCcEEeeecc--ceEEEecCCCceE
Confidence            344555555667899877    466778888887 99999999887765 457899999999995  5699999999999


Q ss_pred             EEEEccCcceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEE
Q 014475          105 YMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIG  184 (424)
Q Consensus       105 ~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  184 (424)
                      ++||.++++++.++-.|...|..+.|+  ..++++++.|..+.+||+....        .......+.+|...|+.+.|+
T Consensus       260 rvWDv~tge~l~tlihHceaVLhlrf~--ng~mvtcSkDrsiaVWdm~sps--------~it~rrVLvGHrAaVNvVdfd  329 (499)
T KOG0281|consen  260 RVWDVNTGEPLNTLIHHCEAVLHLRFS--NGYMVTCSKDRSIAVWDMASPT--------DITLRRVLVGHRAAVNVVDFD  329 (499)
T ss_pred             EEEeccCCchhhHHhhhcceeEEEEEe--CCEEEEecCCceeEEEeccCch--------HHHHHHHHhhhhhheeeeccc
Confidence            999999999999999999999999998  5589999999999999997632        223445678999999999885


Q ss_pred             EcCceeEEEEEeCCCcEEEEecCCCceeeeee-cCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeee
Q 014475          185 YGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIG  263 (424)
Q Consensus       185 ~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~  263 (424)
                      .    +++++++.|.+|++|++.+++.++.+. |...|.|+.+  .++++++|+.|.+|++||+..+         .++.
T Consensus       330 ~----kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G---------~cLR  394 (499)
T KOG0281|consen  330 D----KYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECG---------ACLR  394 (499)
T ss_pred             c----ceEEEecCCceEEEEeccceeeehhhhcccccceehhc--cCeEEEecCCCceEEEEecccc---------HHHH
Confidence            4    699999999999999999999999998 8888988877  6899999999999999999997         6788


Q ss_pred             eecccCcCeEEEEecCCCEEEEeCCCCcEEEEeCCCCc---------EEEEEeccCCCeeEEEEEecCceeeeccCCCce
Q 014475          264 SLSDHSKAVTCLAYSTGDLLISGSEDGMVRVWDPITHN---------IVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPH  334 (424)
Q Consensus       264 ~~~~~~~~i~~~~~~~~~~l~t~~~dg~i~iwd~~~~~---------~~~~~~~~~~~v~~l~~s~~~~~l~~~~~d~~i  334 (424)
                      .+++|+.-|.++.|. .+.+++|+.||+|++||+..+.         ++.++..|.+.|..+.|.  ...+++++.|.+|
T Consensus       395 vLeGHEeLvRciRFd-~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD--~fqIvsssHddtI  471 (499)
T KOG0281|consen  395 VLEGHEELVRCIRFD-NKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFD--EFQIISSSHDDTI  471 (499)
T ss_pred             HHhchHHhhhheeec-CceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEeec--ceEEEeccCCCeE
Confidence            999999999999997 6889999999999999998764         345566789999999995  5689999999999


Q ss_pred             eeccCCCCCC
Q 014475          335 TSSRRHGSQL  344 (424)
Q Consensus       335 ~iw~~~~~~~  344 (424)
                      .+||...+.+
T Consensus       472 LiWdFl~~~~  481 (499)
T KOG0281|consen  472 LIWDFLNGPP  481 (499)
T ss_pred             EEEEcCCCCc
Confidence            9999986644

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=1e-37  Score=280.18  Aligned_cols=285  Identities=21%  Similarity=0.382  Sum_probs=237.1

Q ss_pred             EEeecCCCCCceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCC-ceeeeecCCCC
Q 014475            4 LIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKP-QVEVKSLPAEP   82 (424)
Q Consensus         4 ~lat~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~-~~~~~~~~~~~   82 (424)
                      +||.|- .|..|++|.+...+ ++.++....    +           ..+=+.+.| -.+.+-|-++. .......|.+|
T Consensus       392 mlA~Gf-~dS~i~~~Sl~p~k-l~~lk~~~~----l-----------~~~d~~sad-~~~~~~D~~~~~~~~~L~GH~GP  453 (707)
T KOG0263|consen  392 MLACGF-VDSSVRVWSLTPKK-LKKLKDASD----L-----------SNIDTESAD-VDVDMLDDDSSGTSRTLYGHSGP  453 (707)
T ss_pred             hhhccc-cccEEEEEecchhh-hccccchhh----h-----------ccccccccc-hhhhhccccCCceeEEeecCCCc
Confidence            578888 99999999988543 333332110    1           011111222 22444444433 33346789999


Q ss_pred             eeEEEECCCCCEEEEecCCCcEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccc
Q 014475           83 IKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQR  162 (424)
Q Consensus        83 v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~  162 (424)
                      |..+.|+|+.++|+++++|+++++|.+.+..++..+++|..+|+++.|+|.|-+|||++.|++.++|...          
T Consensus       454 Vyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d----------  523 (707)
T KOG0263|consen  454 VYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTD----------  523 (707)
T ss_pred             eeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecc----------
Confidence            9999999999999999999999999999999999999999999999999999999999999999999984          


Q ss_pred             cccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeee-cCcceeEEEECCCCCEEEEEeCCCc
Q 014475          163 ASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYAGSRDGS  241 (424)
Q Consensus       163 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~  241 (424)
                       ...+++.+.+|.+.|.|+.|+|+.  .++++||.|.+|++||+.+|..++.+. |.++|.+++|+|+|++|++|+.||.
T Consensus       524 -~~~PlRifaghlsDV~cv~FHPNs--~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~  600 (707)
T KOG0263|consen  524 -HNKPLRIFAGHLSDVDCVSFHPNS--NYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGL  600 (707)
T ss_pred             -cCCchhhhcccccccceEEECCcc--cccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCc
Confidence             355678899999999999999999  999999999999999999999999998 9999999999999999999999999


Q ss_pred             EEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCCCc-------------------
Q 014475          242 IYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHN-------------------  301 (424)
Q Consensus       242 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~-------------------  301 (424)
                      |.+||+.++         ..+..+.+|.+.|.++.|+. |..||+|+.|.+|++||+....                   
T Consensus       601 I~iWDl~~~---------~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~~~~~~~~~~~~~~~~~~~~~  671 (707)
T KOG0263|consen  601 IKIWDLANG---------SLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKVIELLNLGHISTSNSAITQEN  671 (707)
T ss_pred             EEEEEcCCC---------cchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchhhcccccccccccccccccccC
Confidence            999999997         67888999999999999999 9999999999999999986422                   


Q ss_pred             -----EEEEEeccCCCeeEEEEEecCceeeec
Q 014475          302 -----IVRMFRLAKGPVNNILVVRRPLYLNLG  328 (424)
Q Consensus       302 -----~~~~~~~~~~~v~~l~~s~~~~~l~~~  328 (424)
                           ++..+..-..+|..+.|......|+.|
T Consensus       672 ~~~~~llgs~~tK~tpv~~l~FtrrNl~L~~g  703 (707)
T KOG0263|consen  672 NASSLLLGSFYTKNTPVVGLHFTRRNLLLAVG  703 (707)
T ss_pred             CCCcceeeeeeecCceEEEEEEeccceeEEec
Confidence                 344444445588888888776555554

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.1e-37  Score=272.41  Aligned_cols=280  Identities=18%  Similarity=0.310  Sum_probs=257.8

Q ss_pred             CCCceEEecceeecCCCccccCCCCceeEEEEECCCCceeee-ecCCCCeeEEEECCCCCEEEEecCCCcEEEEEccCcc
Q 014475           35 PPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVK-SLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGR  113 (424)
Q Consensus        35 ~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~  113 (424)
                      +...|.++.  ++|....++++-.+ |.|.+||.++...... .....||++..|-+..+++++|+.|..|+||+..+++
T Consensus        12 rSdRVKsVd--~HPtePw~la~Lyn-G~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~e   88 (794)
T KOG0276|consen   12 RSDRVKSVD--FHPTEPWILAALYN-GDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGE   88 (794)
T ss_pred             cCCceeeee--cCCCCceEEEeeec-CeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEecccce
Confidence            557788999  99999999999988 9999999998776543 3467899999999999999999999999999999999


Q ss_pred             eeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEE
Q 014475          114 LLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIV  193 (424)
Q Consensus       114 ~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~  193 (424)
                      .+..+..|.+.|.+++.+|...+++++|.|-.|++||.+.          ...+.+++.+|..-|.+++|+|... +.++
T Consensus        89 kV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~----------~wa~~qtfeGH~HyVMqv~fnPkD~-ntFa  157 (794)
T KOG0276|consen   89 KVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWEN----------EWACEQTFEGHEHYVMQVAFNPKDP-NTFA  157 (794)
T ss_pred             eeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccC----------ceeeeeEEcCcceEEEEEEecCCCc-ccee
Confidence            9999999999999999999999999999999999999964          5678889999999999999999876 8999


Q ss_pred             EEeCCCcEEEEecCCCceeeeee-cCcceeEEEECC--CCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCc
Q 014475          194 SASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDP--AEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSK  270 (424)
Q Consensus       194 ~~~~d~~v~iwd~~~~~~~~~~~-~~~~i~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~  270 (424)
                      +++-|++|++|.+.+..+..++. |...|+|+++-+  +..+|++|++|..+++||.++.         .+++++.+|..
T Consensus       158 S~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk---------~CV~TLeGHt~  228 (794)
T KOG0276|consen  158 SASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTK---------SCVQTLEGHTN  228 (794)
T ss_pred             eeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchH---------HHHHHhhcccc
Confidence            99999999999999888888888 899999999988  4579999999999999999996         78999999999


Q ss_pred             CeEEEEecC-CCEEEEeCCCCcEEEEeCCCCcEEEEEeccCCCeeEEEEEecCceeeeccCCCceeec
Q 014475          271 AVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSS  337 (424)
Q Consensus       271 ~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~d~~i~iw  337 (424)
                      .|..+.|+| -.++++|++||+++||+..+.+...++.-.-+.+++++-.+.+..++.|.++|.+.+=
T Consensus       229 Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~gleRvW~I~~~k~~~~i~vG~Deg~i~v~  296 (794)
T KOG0276|consen  229 NVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNYGLERVWCIAAHKGDGKIAVGFDEGSVTVK  296 (794)
T ss_pred             cceEEEecCCCcEEEEecCCccEEEecCcceehhhhhhcCCceEEEEeecCCCCeEEEeccCCcEEEE
Confidence            999999999 8999999999999999999999999988888899999999999999999888877653

>PLN00181 protein SPA1-RELATED; Provisional

Probab=100.00  E-value=2.1e-36  Score=298.91  Aligned_cols=307  Identities=15%  Similarity=0.195  Sum_probs=248.6

Q ss_pred             CCceEEEeCCCCceEEEeeC--CCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCc--------eeeeecCCC
Q 014475           12 DTGIGCWDLESGAEQLRYKS--CASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQ--------VEVKSLPAE   81 (424)
Q Consensus        12 dg~i~vwd~~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~--------~~~~~~~~~   81 (424)
                      +|-+++|+..+.+....++.  ...|...|.+++  |+|+++++++++.| +.|++|+.....        ......+..
T Consensus       457 ~gl~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~--fs~dg~~latgg~D-~~I~iwd~~~~~~~~~~~~~~~~~~~~~~  533 (793)
T PLN00181        457 EGLCKYLSFSKLRVKADLKQGDLLNSSNLVCAIG--FDRDGEFFATAGVN-KKIKIFECESIIKDGRDIHYPVVELASRS  533 (793)
T ss_pred             hhhhhhhcccceEEEEeeccccccCCCCcEEEEE--ECCCCCEEEEEeCC-CEEEEEECCcccccccccccceEEecccC
Confidence            56788999887666554432  234677899999  99999999999998 999999975421        112223456


Q ss_pred             CeeEEEECC-CCCEEEEecCCCcEEEEEccCcceeeeeccccCCeEEEEEcc-CCcEEEEeeCCCcEEEEeCCcccchhc
Q 014475           82 PIKPIAANS-HGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSE-DGSFLISGSEDGCVRIWSLLTVFEECE  159 (424)
Q Consensus        82 ~v~~~~~s~-~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~  159 (424)
                      .+.+++|+| ++.+|++++.||.|++||+.+++.+..+.+|.+.|++++|+| ++.+|++|+.||.|++||++++     
T Consensus       534 ~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~-----  608 (793)
T PLN00181        534 KLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQG-----  608 (793)
T ss_pred             ceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCC-----
Confidence            899999987 578999999999999999999999999999999999999997 7889999999999999999652     


Q ss_pred             ccccccceEEeecCCcCceeEEEEEE-cCceeEEEEEeCCCcEEEEecCCCc-eeeeee-cCcceeEEEECCCCCEEEEE
Q 014475          160 SQRASHLYLHSFTGHTLRITDIVIGY-GGVSATIVSASEDRTCKVWSLLKGR-LLRNIV-FPSVIDAIALDPAEHVFYAG  236 (424)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~l~~~~~d~~v~iwd~~~~~-~~~~~~-~~~~i~~~~~~~~~~~l~~~  236 (424)
                            ..+..+..+ ..+.++.|.+ ++  ..+++|+.||.|++||+++.+ .+..+. |...|.++.|. ++.+++++
T Consensus       609 ------~~~~~~~~~-~~v~~v~~~~~~g--~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~  678 (793)
T PLN00181        609 ------VSIGTIKTK-ANICCVQFPSESG--RSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSS  678 (793)
T ss_pred             ------cEEEEEecC-CCeEEEEEeCCCC--CEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEE
Confidence                  233444433 5788999865 44  899999999999999998765 344444 78899999997 67899999


Q ss_pred             eCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCCCcEEEEE---------
Q 014475          237 SRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMF---------  306 (424)
Q Consensus       237 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~~~~~---------  306 (424)
                      +.|+.|++||++.....   ....++..+.+|...+.+++|+| +.+|++|+.|+.|++|+.....++..+         
T Consensus       679 s~D~~ikiWd~~~~~~~---~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~  755 (793)
T PLN00181        679 STDNTLKLWDLSMSISG---INETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVS  755 (793)
T ss_pred             ECCCEEEEEeCCCCccc---cCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCccc
Confidence            99999999999754211   11245678889999999999999 999999999999999998766544332         


Q ss_pred             ----eccCCCeeEEEEEecCceeeeccCCCceeeccC
Q 014475          307 ----RLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRR  339 (424)
Q Consensus       307 ----~~~~~~v~~l~~s~~~~~l~~~~~d~~i~iw~~  339 (424)
                          ..+...|.+++|+|++..|++|+.||.|++|++
T Consensus       756 ~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~~  792 (793)
T PLN00181        756 GLEVDDASQFISSVCWRGQSSTLVAANSTGNIKILEM  792 (793)
T ss_pred             ccccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence                224457999999999999999999999999985

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=5.2e-37  Score=237.46  Aligned_cols=279  Identities=18%  Similarity=0.264  Sum_probs=243.5

Q ss_pred             CCCCceEEecceeecCCCccccCCCCceeEEEEECCCCcee-eeecCCCCeeEEEECCCCCEEEEecCCCcEEEEEccCc
Q 014475           34 SPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVE-VKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASG  112 (424)
Q Consensus        34 ~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~  112 (424)
                      .+..+|.++.  |.-+|++.+++|+| .+|++|+...+... .-..|...|..++.+.|+..+++|+.|..+.+||+++|
T Consensus        15 ~~qgaV~avr--yN~dGnY~ltcGsd-rtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TG   91 (307)
T KOG0316|consen   15 CAQGAVRAVR--YNVDGNYCLTCGSD-RTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTG   91 (307)
T ss_pred             ccccceEEEE--EccCCCEEEEcCCC-ceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEcccC
Confidence            3446677777  99999999999998 99999998877665 34568999999999999999999999999999999999


Q ss_pred             ceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEE
Q 014475          113 RLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATI  192 (424)
Q Consensus       113 ~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l  192 (424)
                      +.++.+++|.+.|+.+.|+.+...+++|+.|..+++||.++         ....+++.+......|.++.+..    ..+
T Consensus        92 kv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS---------~s~ePiQildea~D~V~Si~v~~----heI  158 (307)
T KOG0316|consen   92 KVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRS---------RSFEPIQILDEAKDGVSSIDVAE----HEI  158 (307)
T ss_pred             eeeeecccccceeeEEEecCcceEEEeccccceeEEEEccc---------CCCCccchhhhhcCceeEEEecc----cEE
Confidence            99999999999999999999999999999999999999987         66778888888889999988864    578


Q ss_pred             EEEeCCCcEEEEecCCCceeeeeecCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCe
Q 014475          193 VSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAV  272 (424)
Q Consensus       193 ~~~~~d~~v~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i  272 (424)
                      ++|+.||+++.||++.|+..... ...+|++++|+++++..++++.|+++++.|-.++         +.+...++|...-
T Consensus       159 vaGS~DGtvRtydiR~G~l~sDy-~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tG---------klL~sYkGhkn~e  228 (307)
T KOG0316|consen  159 VAGSVDGTVRTYDIRKGTLSSDY-FGHPITSVSFSKDGNCSLASSLDSTLRLLDKETG---------KLLKSYKGHKNME  228 (307)
T ss_pred             EeeccCCcEEEEEeecceeehhh-cCCcceeEEecCCCCEEEEeeccceeeecccchh---------HHHHHhcccccce
Confidence            99999999999999998765433 6789999999999999999999999999999997         6778888887654


Q ss_pred             EE--EEecC-CCEEEEeCCCCcEEEEeCCCCcEEEEEeccCCC-eeEEEEEecCceeeeccCCCceeeccC
Q 014475          273 TC--LAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGP-VNNILVVRRPLYLNLGSFSNPHTSSRR  339 (424)
Q Consensus       273 ~~--~~~~~-~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~-v~~l~~s~~~~~l~~~~~d~~i~iw~~  339 (424)
                      ..  .+++. ...+++|++||.|.+||+.....+..+..+... |+++.++|....++++. ++.+.+|.-
T Consensus       229 ykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~~~~f~~A~-~~~~~~~~~  298 (307)
T KOG0316|consen  229 YKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQISKLSVVSTVIVTDLSCHPTMDDFITAT-GHGDLFWYQ  298 (307)
T ss_pred             eeeeeeecccceeEEeccCCceEEEEEeccceeeeeeccCCceeEEeeecccCccceeEec-CCceeceee
Confidence            43  45556 889999999999999999999999999988887 89999999877776664 344555643

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=100.00  E-value=2.5e-37  Score=254.94  Aligned_cols=292  Identities=23%  Similarity=0.263  Sum_probs=250.6

Q ss_pred             CCCCceEEecceeecCCCccccCCCCceeEEEEECCCCceeeeecCCCCeeEEEECC---CCCEEEEecCCCcEEEEEcc
Q 014475           34 SPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSLPAEPIKPIAANS---HGTYIAGGGQSGDIYMWEVA  110 (424)
Q Consensus        34 ~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~~~~~~~v~~~~~s~---~~~~l~~~~~dg~v~iwd~~  110 (424)
                      .|.+.|.++.  ..  ++.+++++.| |.+++||...........|.++|.+++|.-   ....|++++.|.++++|..+
T Consensus       103 ~hdDWVSsv~--~~--~~~IltgsYD-g~~riWd~~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~  177 (423)
T KOG0313|consen  103 LHDDWVSSVK--GA--SKWILTGSYD-GTSRIWDLKGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWN  177 (423)
T ss_pred             cchhhhhhhc--cc--CceEEEeecC-CeeEEEecCCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEec
Confidence            3556666655  32  7899999998 999999999888888899999999888753   23469999999999999998


Q ss_pred             Ccce----eeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccc--------------hhcccccccceEEeec
Q 014475          111 SGRL----LKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFE--------------ECESQRASHLYLHSFT  172 (424)
Q Consensus       111 ~~~~----~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~--------------~~~~~~~~~~~~~~~~  172 (424)
                      .++.    +...++|...|.++...+++..+++|+.|.+|.+|+..+...              ..........++..+.
T Consensus       178 ~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~  257 (423)
T KOG0313|consen  178 VGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLE  257 (423)
T ss_pred             CchhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEec
Confidence            7743    333459999999999999999999999999999999432111              0112233455778899


Q ss_pred             CCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeeecCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCC
Q 014475          173 GHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESP  252 (424)
Q Consensus       173 ~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~  252 (424)
                      +|..+|.++.|++.   ..+++++.|.+|+.||+.++.....+..+..++++..+|..++|++|+.|..+++||.+++..
T Consensus       258 GHt~~Vs~V~w~d~---~v~yS~SwDHTIk~WDletg~~~~~~~~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~g  334 (423)
T KOG0313|consen  258 GHTEPVSSVVWSDA---TVIYSVSWDHTIKVWDLETGGLKSTLTTNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDG  334 (423)
T ss_pred             ccccceeeEEEcCC---CceEeecccceEEEEEeecccceeeeecCcceeEeecccccceeeecCCCCceeecCCCCCCC
Confidence            99999999999984   789999999999999999999999999999999999999999999999999999999998753


Q ss_pred             CCCCcCceeeeeecccCcCeEEEEecC--CCEEEEeCCCCcEEEEeCCCCc-EEEEEeccCCCeeEEEEEecCceeeecc
Q 014475          253 STSSYGMHIIGSLSDHSKAVTCLAYST--GDLLISGSEDGMVRVWDPITHN-IVRMFRLAKGPVNNILVVRRPLYLNLGS  329 (424)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~l~t~~~dg~i~iwd~~~~~-~~~~~~~~~~~v~~l~~s~~~~~l~~~~  329 (424)
                      .      -....+.+|.+.|.++.|+|  ..+|++|+.|+++++||+++.+ ++..+.+|...|.++.|. ++..|++|+
T Consensus       335 s------~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~-~~~~IvSGG  407 (423)
T KOG0313|consen  335 S------VVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWN-EGGLIVSGG  407 (423)
T ss_pred             c------eeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEecc-CCceEEecc
Confidence            2      45678889999999999999  6789999999999999999887 999999999999999998 456999999


Q ss_pred             CCCceeeccCC
Q 014475          330 FSNPHTSSRRH  340 (424)
Q Consensus       330 ~d~~i~iw~~~  340 (424)
                      .|.+++++...
T Consensus       408 aD~~l~i~~~~  418 (423)
T KOG0313|consen  408 ADNKLRIFKGS  418 (423)
T ss_pred             CcceEEEeccc
Confidence            99999998754

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=2.2e-36  Score=238.67  Aligned_cols=272  Identities=17%  Similarity=0.352  Sum_probs=227.8

Q ss_pred             EEEeecCCCCCceEEEeCCCCc---eEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCcee---ee
Q 014475            3 LLIASSSVADTGIGCWDLESGA---EQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVE---VK   76 (424)
Q Consensus         3 ~~lat~~~~dg~i~vwd~~~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~---~~   76 (424)
                      .+|||++ .|+.|++|+..++.   +...+.  .+|.+.|..++  |+|.|++|++++-| .++.||.-..++..   ..
T Consensus        28 ~ilAscg-~Dk~vriw~~~~~~s~~ck~vld--~~hkrsVRsvA--wsp~g~~La~aSFD-~t~~Iw~k~~~efecv~~l  101 (312)
T KOG0645|consen   28 VILASCG-TDKAVRIWSTSSGDSWTCKTVLD--DGHKRSVRSVA--WSPHGRYLASASFD-ATVVIWKKEDGEFECVATL  101 (312)
T ss_pred             eEEEeec-CCceEEEEecCCCCcEEEEEecc--ccchheeeeee--ecCCCcEEEEeecc-ceEEEeecCCCceeEEeee
Confidence            4799999 99999999988532   333333  36788999999  99999999999998 99999998766654   34


Q ss_pred             ecCCCCeeEEEECCCCCEEEEecCCCcEEEEEccCc---ceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCc
Q 014475           77 SLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASG---RLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLT  153 (424)
Q Consensus        77 ~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~---~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~  153 (424)
                      ..|...|.|++|+++|++||+++.|..|-||.+..+   ++...+++|...|..+.|+|...+|++++.|.+|++|+-..
T Consensus       102 EGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~  181 (312)
T KOG0645|consen  102 EGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDED  181 (312)
T ss_pred             eccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcceeEEeccCCeEEEEeecC
Confidence            579999999999999999999999999999999754   56788899999999999999999999999999999998752


Q ss_pred             ccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeeecCcceeEEEECCCCCEE
Q 014475          154 VFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVF  233 (424)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l  233 (424)
                              .....+..++.+|...|.+++|.+.|  ..|++++.|++++||-..+.   ....|...+..+.|.  ...+
T Consensus       182 --------dddW~c~~tl~g~~~TVW~~~F~~~G--~rl~s~sdD~tv~Iw~~~~~---~~~~~sr~~Y~v~W~--~~~I  246 (312)
T KOG0645|consen  182 --------DDDWECVQTLDGHENTVWSLAFDNIG--SRLVSCSDDGTVSIWRLYTD---LSGMHSRALYDVPWD--NGVI  246 (312)
T ss_pred             --------CCCeeEEEEecCccceEEEEEecCCC--ceEEEecCCcceEeeeeccC---cchhcccceEeeeec--ccce
Confidence                    25677889999999999999999998  89999999999999986522   122367889999998  6679


Q ss_pred             EEEeCCCcEEEEEcCCCCCCCCCcCceee-eeecccCcCeEEEEecC--CCEEEEeCCCCcEEEEeCC
Q 014475          234 YAGSRDGSIYIAALNAESPSTSSYGMHII-GSLSDHSKAVTCLAYST--GDLLISGSEDGMVRVWDPI  298 (424)
Q Consensus       234 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~--~~~l~t~~~dg~i~iwd~~  298 (424)
                      ++++.|+.|++|.-..... ..  .++.+ .....|...|++++|+|  .+.|++|+.||.|++|.+.
T Consensus       247 aS~ggD~~i~lf~~s~~~d-~p--~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~  311 (312)
T KOG0645|consen  247 ASGGGDDAIRLFKESDSPD-EP--SWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWELE  311 (312)
T ss_pred             EeccCCCEEEEEEecCCCC-Cc--hHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEEec
Confidence            9999999999998764211 11  11222 24457999999999999  8899999999999999864

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=100.00  E-value=1.8e-38  Score=263.94  Aligned_cols=268  Identities=20%  Similarity=0.325  Sum_probs=234.0

Q ss_pred             EEEeecCCCCCceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCceeeeec-CCC
Q 014475            3 LLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSL-PAE   81 (424)
Q Consensus         3 ~~lat~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~~~-~~~   81 (424)
                      -.|++|+ ..|.+.||+..+-.-. +  ....|...|.++.  |++++.+++++..+ |.|++|+..-..+..... |.+
T Consensus       109 RRLltgs-~SGEFtLWNg~~fnFE-t--ilQaHDs~Vr~m~--ws~~g~wmiSgD~g-G~iKyWqpnmnnVk~~~ahh~e  181 (464)
T KOG0284|consen  109 RRLLTGS-QSGEFTLWNGTSFNFE-T--ILQAHDSPVRTMK--WSHNGTWMISGDKG-GMIKYWQPNMNNVKIIQAHHAE  181 (464)
T ss_pred             ceeEeec-ccccEEEecCceeeHH-H--HhhhhcccceeEE--EccCCCEEEEcCCC-ceEEecccchhhhHHhhHhhhh
Confidence            3688999 9999999996322111 1  2235667888888  99999999999998 999999988766665554 459


Q ss_pred             CeeEEEECCCCCEEEEecCCCcEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhccc
Q 014475           82 PIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQ  161 (424)
Q Consensus        82 ~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~  161 (424)
                      .|++++|+|+...+++++.||+|+|||....+....+.+|.-.|.++.|+|...++++++.|..|++||.++        
T Consensus       182 aIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprS--------  253 (464)
T KOG0284|consen  182 AIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRS--------  253 (464)
T ss_pred             hhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeecCCC--------
Confidence            999999999999999999999999999999998889999999999999999999999999999999999966        


Q ss_pred             ccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeee-cCcceeEEEECC-CCCEEEEEeCC
Q 014475          162 RASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDP-AEHVFYAGSRD  239 (424)
Q Consensus       162 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~-~~~~i~~~~~~~-~~~~l~~~~~d  239 (424)
                         ..++.++..|+..|..+.|++++  ++|++++.|..++++|+++.+.+..+. |...++++.|+| ...+|.+|+.|
T Consensus       254 ---g~cl~tlh~HKntVl~~~f~~n~--N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~D  328 (464)
T KOG0284|consen  254 ---GSCLATLHGHKNTVLAVKFNPNG--NWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSD  328 (464)
T ss_pred             ---cchhhhhhhccceEEEEEEcCCC--CeeEEccCCceEEEEehhHhHHHHHhhcchhhheeeccccccccceeeccCC
Confidence               44677888999999999999999  999999999999999999888888877 999999999999 67888999999


Q ss_pred             CcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCC
Q 014475          240 GSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPI  298 (424)
Q Consensus       240 g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~  298 (424)
                      |.|..|.+....        .....-.+|...|.+++|+| |.+|++|+.|.++++|.-.
T Consensus       329 gsvvh~~v~~~~--------p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r~  380 (464)
T KOG0284|consen  329 GSVVHWVVGLEE--------PLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWTRN  380 (464)
T ss_pred             CceEEEeccccc--------cccCCCcccccceeeeeccccceeEeecCCCcceeeeccC
Confidence            999999998543        23334457999999999999 9999999999999999743

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=100.00  E-value=3.9e-38  Score=267.47  Aligned_cols=283  Identities=19%  Similarity=0.314  Sum_probs=246.7

Q ss_pred             CCCCCceEEecceeec-CCCccccCCCCceeEEEEECCCCc-ee-eeecCCCCeeEEEECCCCCEEEEecCCCcEEEEEc
Q 014475           33 ASPPHGLACVGQRFLA-SSQLREQPSASSGSILYWSWSKPQ-VE-VKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEV  109 (424)
Q Consensus        33 ~~~~~~v~~~~~~~~~-~~~~l~~~~~~~g~i~vwd~~~~~-~~-~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~  109 (424)
                      .+|..+|.++.  |.| .+.++++++.| +.|+||++.... +. ....|..+|..++|+++|..+++++.|+.|++||+
T Consensus       211 ~gH~kgvsai~--~fp~~~hLlLS~gmD-~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDt  287 (503)
T KOG0282|consen  211 SGHTKGVSAIQ--WFPKKGHLLLSGGMD-GLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDT  287 (503)
T ss_pred             cCCccccchhh--hccceeeEEEecCCC-ceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeeeecc
Confidence            45667888888  999 88999999998 999999998743 32 34568999999999999999999999999999999


Q ss_pred             cCcceeeeeccccCCeEEEEEccCC-cEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCc
Q 014475          110 ASGRLLKKWHAHYRAVTCLVFSEDG-SFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGV  188 (424)
Q Consensus       110 ~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  188 (424)
                      ++|+++..+. -...++|+.|+|++ +.+++|+.|+.|+.||+++           ...++.+..|-+.|..+.|-+.+ 
T Consensus       288 ETG~~~~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs-----------~kvvqeYd~hLg~i~~i~F~~~g-  354 (503)
T KOG0282|consen  288 ETGQVLSRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRS-----------GKVVQEYDRHLGAILDITFVDEG-  354 (503)
T ss_pred             ccceEEEEEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEeccc-----------hHHHHHHHhhhhheeeeEEccCC-
Confidence            9999999886 45678999999988 8899999999999999976           33567778899999999999999 


Q ss_pred             eeEEEEEeCCCcEEEEecCCCceeeeee--cCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeec
Q 014475          189 SATIVSASEDRTCKVWSLLKGRLLRNIV--FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLS  266 (424)
Q Consensus       189 ~~~l~~~~~d~~v~iwd~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~  266 (424)
                       ..+++++.|+++++|+.+.+.+++.+.  ......++..+|+++++++-+.|+.|.++.+...-.      ...-..+.
T Consensus       355 -~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r------~nkkK~fe  427 (503)
T KOG0282|consen  355 -RRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFR------LNKKKRFE  427 (503)
T ss_pred             -ceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccc------cCHhhhhc
Confidence             899999999999999999888777766  445678899999999999999999999999766432      13345667


Q ss_pred             ccCc--CeEEEEecC-CCEEEEeCCCCcEEEEeCCCCcEEEEEeccCCCeeEEEEEecC-ceeeeccCCCceeecc
Q 014475          267 DHSK--AVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRP-LYLNLGSFSNPHTSSR  338 (424)
Q Consensus       267 ~~~~--~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~-~~l~~~~~d~~i~iw~  338 (424)
                      +|..  .-..+.||| |++|++|+.||.+.+||.++-+++..++.|.+++..+.|+|.. ..+|+++.||.|++|+
T Consensus       428 Gh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd  503 (503)
T KOG0282|consen  428 GHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD  503 (503)
T ss_pred             ceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence            7754  456688999 9999999999999999999999999999999999999999964 6789999999999996

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=100.00  E-value=3.1e-37  Score=252.57  Aligned_cols=256  Identities=18%  Similarity=0.287  Sum_probs=235.6

Q ss_pred             ecCCCCeeEEEECCCCCEEEEecCCCcEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccc
Q 014475           77 SLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFE  156 (424)
Q Consensus        77 ~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~  156 (424)
                      ..|.+.|.|+++.|.+.+|++|+.|++++|||+.+|++..++.+|-..|..+++++-..++++++.|+.|+.||++    
T Consensus       148 ~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe----  223 (460)
T KOG0285|consen  148 SGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLE----  223 (460)
T ss_pred             hhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEech----
Confidence            4588999999999999999999999999999999999999999999999999999999999999999999999994    


Q ss_pred             hhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeee-cCcceeEEEECCCCCEEEE
Q 014475          157 ECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYA  235 (424)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~  235 (424)
                             ..+.++.+.+|-+.|.+++..|.-  ..|++|+.|.++++||+++...+..+. |..+|..+.+.|.+..+++
T Consensus       224 -------~nkvIR~YhGHlS~V~~L~lhPTl--dvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit  294 (460)
T KOG0285|consen  224 -------YNKVIRHYHGHLSGVYCLDLHPTL--DVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVIT  294 (460)
T ss_pred             -------hhhhHHHhccccceeEEEeccccc--eeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEE
Confidence                   456678889999999999999988  899999999999999999999999998 9999999999998999999


Q ss_pred             EeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCCCcEEEEEeccCCCee
Q 014475          236 GSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVN  314 (424)
Q Consensus       236 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~v~  314 (424)
                      |+.|++|++||++.+         +....+..|...+.+++.+| ...+++++.|. |+-|++..|..++.+.+|.+-|+
T Consensus       295 ~S~D~tvrlWDl~ag---------kt~~tlt~hkksvral~lhP~e~~fASas~dn-ik~w~~p~g~f~~nlsgh~~iin  364 (460)
T KOG0285|consen  295 GSHDSTVRLWDLRAG---------KTMITLTHHKKSVRALCLHPKENLFASASPDN-IKQWKLPEGEFLQNLSGHNAIIN  364 (460)
T ss_pred             ecCCceEEEeeeccC---------ceeEeeecccceeeEEecCCchhhhhccCCcc-ceeccCCccchhhccccccceee
Confidence            999999999999998         55677888999999999999 78888888775 99999999999999999999999


Q ss_pred             EEEEEecCceeeeccCCCceeeccCCCCCCCCCccccccccc
Q 014475          315 NILVVRRPLYLNLGSFSNPHTSSRRHGSQLPPPLDKYVTSAD  356 (424)
Q Consensus       315 ~l~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~  356 (424)
                      +++...|+ ++++|++.|.+.+||.+++..++..+..+...+
T Consensus       365 tl~~nsD~-v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGS  405 (460)
T KOG0285|consen  365 TLSVNSDG-VLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGS  405 (460)
T ss_pred             eeeeccCc-eEEEcCCceEEEEEecCcCcccccccccccCCc
Confidence            99999887 889999999999999999887777655554444

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=100.00  E-value=1.6e-35  Score=243.14  Aligned_cols=296  Identities=17%  Similarity=0.228  Sum_probs=248.5

Q ss_pred             CCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCcee-eeecCCCCeeEEEECCCCCEEEEecCCCcEEEEEccC
Q 014475           33 ASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVE-VKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVAS  111 (424)
Q Consensus        33 ~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~  111 (424)
                      ..|...|.+++  .+|+.++++++|.| ..-.+|+..+++.. ....|++.|+++.|+.+|.+||+|+.+|.|+||+..+
T Consensus        61 ~~H~~svFavs--l~P~~~l~aTGGgD-D~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~st  137 (399)
T KOG0296|consen   61 DKHTDSVFAVS--LHPNNNLVATGGGD-DLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVST  137 (399)
T ss_pred             hhcCCceEEEE--eCCCCceEEecCCC-ceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEccc
Confidence            34567899999  99999999999988 99999999988765 4467999999999999999999999999999999999


Q ss_pred             cceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeE
Q 014475          112 GRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSAT  191 (424)
Q Consensus       112 ~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~  191 (424)
                      +.....+...-..+.=+.|+|.+..|+.|+.||.+-+|.+.           +....+.+.+|..++++-.|.|+|  +.
T Consensus       138 g~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip-----------~~~~~kv~~Gh~~~ct~G~f~pdG--Kr  204 (399)
T KOG0296|consen  138 GGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIP-----------SQALCKVMSGHNSPCTCGEFIPDG--KR  204 (399)
T ss_pred             CceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECC-----------CcceeeEecCCCCCcccccccCCC--ce
Confidence            99888887667788889999999999999999999999994           345678899999999999999998  99


Q ss_pred             EEEEeCCCcEEEEecCCCceeeeee--cCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccC
Q 014475          192 IVSASEDRTCKVWSLLKGRLLRNIV--FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHS  269 (424)
Q Consensus       192 l~~~~~d~~v~iwd~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~  269 (424)
                      ++++..||+|++||+.+++++..+.  ......++.++..+..++.|+.++.+++-+..+++....... ........+.
T Consensus       205 ~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~-~~~~l~~~~e  283 (399)
T KOG0296|consen  205 ILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNG-TVPELKPSQE  283 (399)
T ss_pred             EEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCC-CCccccccch
Confidence            9999999999999999999998887  345678888888999999999999998888777643211110 0011112355


Q ss_pred             cCeEEEEecC----CCEEEEeCCCCcEEEEeCCCCcEEEEEeccCCCeeEEEEEecCceeeeccCCCceeeccCCCCCCC
Q 014475          270 KAVTCLAYST----GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGSQLP  345 (424)
Q Consensus       270 ~~i~~~~~~~----~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~d~~i~iw~~~~~~~~  345 (424)
                      ..+.++.+.|    -.+.|+|+-||+|.|||+...++.+.+. |..+|+.+.|-+ ..+|++++.+|.|+.||.+++++.
T Consensus       284 ~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~-he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~  361 (399)
T KOG0296|consen  284 ELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICE-HEDGVTKLKWLN-TDYLLTACANGKVRQWDARTGQLK  361 (399)
T ss_pred             hhhhhhhhcccccccchhhcccccceEEEEecccchhheecc-CCCceEEEEEcC-cchheeeccCceEEeeeccccceE
Confidence            5556665555    5688999999999999999877666555 889999999999 789999999999999999999874


Q ss_pred             CC
Q 014475          346 PP  347 (424)
Q Consensus       346 ~~  347 (424)
                      ..
T Consensus       362 ~~  363 (399)
T KOG0296|consen  362 FT  363 (399)
T ss_pred             EE
Confidence            33

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=1.3e-35  Score=264.64  Aligned_cols=329  Identities=17%  Similarity=0.261  Sum_probs=277.2

Q ss_pred             EEEeecCCCCCceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCceeee-ecCCC
Q 014475            3 LLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVK-SLPAE   81 (424)
Q Consensus         3 ~~lat~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~-~~~~~   81 (424)
                      ..||.|- .||.|+||+.+++....++.+|   ..+|+++.  |...|.++++++.| +.|.+||+-...-..+ ..|.+
T Consensus        78 l~lAVGY-aDGsVqif~~~s~~~~~tfngH---K~AVt~l~--fd~~G~rlaSGskD-t~IIvwDlV~E~Gl~rL~GHkd  150 (888)
T KOG0306|consen   78 LLLAVGY-ADGSVQIFSLESEEILITFNGH---KAAVTTLK--FDKIGTRLASGSKD-TDIIVWDLVGEEGLFRLRGHKD  150 (888)
T ss_pred             ceEEEEe-cCceEEeeccCCCceeeeeccc---ccceEEEE--EcccCceEeecCCC-ccEEEEEeccceeeEEeecchH
Confidence            3578888 9999999999999888777665   47799999  99999999999998 9999999977665544 56899


Q ss_pred             CeeEEEECCCCCEEEEecCCCcEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccch----
Q 014475           82 PIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEE----  157 (424)
Q Consensus        82 ~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~----  157 (424)
                      .|+..-|..+.+++++.+.|+.|++||+++..+..+.-.|.+.++.+++.+  +.+++++.|+.+++|++......    
T Consensus       151 ~iT~~~F~~~~~~lvS~sKDs~iK~WdL~tqhCf~Thvd~r~Eiw~l~~~~--~~lvt~~~dse~~v~~L~~~~D~~~~~  228 (888)
T KOG0306|consen  151 SITQALFLNGDSFLVSVSKDSMIKFWDLETQHCFETHVDHRGEIWALVLDE--KLLVTAGTDSELKVWELAFEDDEKETN  228 (888)
T ss_pred             HHhHHhccCCCeEEEEeccCceEEEEecccceeeeEEecccceEEEEEEec--ceEEEEecCCceEEEEeeccccccccc
Confidence            999999999899999999999999999999999999999999999999986  78999999999999998110000    


Q ss_pred             --------------------------------hc-------------------------------cc------c------
Q 014475          158 --------------------------------CE-------------------------------SQ------R------  162 (424)
Q Consensus       158 --------------------------------~~-------------------------------~~------~------  162 (424)
                                                      +.                               ..      .      
T Consensus       229 ~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~  308 (888)
T KOG0306|consen  229 RYISTKLRGTFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLS  308 (888)
T ss_pred             ccceeeccceeeeccCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHH
Confidence                                            00                               00      0      


Q ss_pred             --------------------------------------------------------------------------------
Q 014475          163 --------------------------------------------------------------------------------  162 (424)
Q Consensus       163 --------------------------------------------------------------------------------  162 (424)
                                                                                                      
T Consensus       309 ~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~  388 (888)
T KOG0306|consen  309 DEIKRLETIRTSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSDSILL  388 (888)
T ss_pred             HHHHHHHheechhheeEEEEEecCCcceeEEEeecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeecCceee
Confidence                                                                                            


Q ss_pred             -----------------------------------------------------cccceEEeecCCcCceeEEEEEEcCce
Q 014475          163 -----------------------------------------------------ASHLYLHSFTGHTLRITDIVIGYGGVS  189 (424)
Q Consensus       163 -----------------------------------------------------~~~~~~~~~~~~~~~i~~~~~~~~~~~  189 (424)
                                                                           .....+.+...|.+.|++++.+|++  
T Consensus       389 ~Sga~~SikiWn~~t~kciRTi~~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~--  466 (888)
T KOG0306|consen  389 ASGAGESIKIWNRDTLKCIRTITCGYILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSPDN--  466 (888)
T ss_pred             eecCCCcEEEEEccCcceeEEeccccEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhccccceeeeeecCCC--
Confidence                                                                 0000011125677777778878888  


Q ss_pred             eEEEEEeCCCcEEEEecCC-----Cce--------eeeeecCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCC
Q 014475          190 ATIVSASEDRTCKVWSLLK-----GRL--------LRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSS  256 (424)
Q Consensus       190 ~~l~~~~~d~~v~iwd~~~-----~~~--------~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~  256 (424)
                      ..+++|+.|.+|++||..-     +..        .+.+..+..|.|+.+|||+++|+++--|.++++|-+++-      
T Consensus       467 ~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtl------  540 (888)
T KOG0306|consen  467 KGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTL------  540 (888)
T ss_pred             CceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecce------
Confidence            8899999999999999741     111        134446788999999999999999999999999999995      


Q ss_pred             cCceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCCCcEEEEEeccCCCeeEEEEEecCceeeeccCCCcee
Q 014475          257 YGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHT  335 (424)
Q Consensus       257 ~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~d~~i~  335 (424)
                         +....+.+|.-||.||..+| +..++|||.|.+|+||-+.-|.+-+.+-+|...|.++.|-|+..++.++|.|+.++
T Consensus       541 ---KFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvK  617 (888)
T KOG0306|consen  541 ---KFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVK  617 (888)
T ss_pred             ---eeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhcccCceeEEEEcccceeEEEecCcceEE
Confidence               67778899999999999999 99999999999999999999999999999999999999999999999999999999


Q ss_pred             eccCCCCCCCCCcccc
Q 014475          336 SSRRHGSQLPPPLDKY  351 (424)
Q Consensus       336 iw~~~~~~~~~~~~~~  351 (424)
                      -||-...+..+.+..+
T Consensus       618 qWDg~kFe~iq~L~~H  633 (888)
T KOG0306|consen  618 QWDGEKFEEIQKLDGH  633 (888)
T ss_pred             eechhhhhhheeeccc
Confidence            9998877776665544

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=100.00  E-value=6.4e-36  Score=239.42  Aligned_cols=259  Identities=23%  Similarity=0.273  Sum_probs=227.9

Q ss_pred             eeecCCCCeeEEEECCCCCEEEEecCCCcEEEEEcc-CcceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCc
Q 014475           75 VKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVA-SGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLT  153 (424)
Q Consensus        75 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~-~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~  153 (424)
                      ....|++.|+.+.|+|+|.+||+|+.|..|.+|+.. .-+-...+++|.+.|..+.|.+|++.+++++.|.+++.||.++
T Consensus        42 ~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~t  121 (338)
T KOG0265|consen   42 LLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAET  121 (338)
T ss_pred             hcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEeccc
Confidence            445689999999999999999999999999999954 3355677889999999999999999999999999999999966


Q ss_pred             ccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeeecCcceeEEEECCCCCEE
Q 014475          154 VFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVF  233 (424)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l  233 (424)
                                 .+..+.+++|..-++.+.-+.-+. ..+.+++.|+++++||+++...++.+..+.+++++.|..++..+
T Consensus       122 -----------G~~~rk~k~h~~~vNs~~p~rrg~-~lv~SgsdD~t~kl~D~R~k~~~~t~~~kyqltAv~f~d~s~qv  189 (338)
T KOG0265|consen  122 -----------GKRIRKHKGHTSFVNSLDPSRRGP-QLVCSGSDDGTLKLWDIRKKEAIKTFENKYQLTAVGFKDTSDQV  189 (338)
T ss_pred             -----------ceeeehhccccceeeecCccccCC-eEEEecCCCceEEEEeecccchhhccccceeEEEEEecccccce
Confidence                       445777889999999998665554 77889999999999999999999999889999999999999999


Q ss_pred             EEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCC----CcEEEEEec
Q 014475          234 YAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPIT----HNIVRMFRL  308 (424)
Q Consensus       234 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~----~~~~~~~~~  308 (424)
                      .+|+-|+.|++||++.+         .....+.+|..+|+.+..+| |.++.+-+.|.++++||++.    .+++..+.+
T Consensus       190 ~sggIdn~ikvWd~r~~---------d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g  260 (338)
T KOG0265|consen  190 ISGGIDNDIKVWDLRKN---------DGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQG  260 (338)
T ss_pred             eeccccCceeeeccccC---------cceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeec
Confidence            99999999999999987         56889999999999999999 99999999999999999984    355777877


Q ss_pred             cCC----CeeEEEEEecCceeeeccCCCceeeccCCCCCCCCCccccccc
Q 014475          309 AKG----PVNNILVVRRPLYLNLGSFSNPHTSSRRHGSQLPPPLDKYVTS  354 (424)
Q Consensus       309 ~~~----~v~~l~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~  354 (424)
                      |..    ....++|+|++.++.+|+.|..+++||.........+..+..+
T Consensus       261 ~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gs  310 (338)
T KOG0265|consen  261 HIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLPGHYGS  310 (338)
T ss_pred             chhhhhhhcceeeccCCCCccccccccceEEEeecccccEEEEcCCccee
Confidence            653    4567899999999999999999999999987766655555433

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=2.6e-35  Score=262.78  Aligned_cols=317  Identities=18%  Similarity=0.227  Sum_probs=268.0

Q ss_pred             CCCceEEEeCCC-Cce------EEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCceeeeecCCCCe
Q 014475           11 ADTGIGCWDLES-GAE------QLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSLPAEPI   83 (424)
Q Consensus        11 ~dg~i~vwd~~~-~~~------~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~~~~~~~v   83 (424)
                      ++.++..+.++. +..      ...+ ...+|...|..++  ++.+...+++++.  +.|++|+..+.+....... +-+
T Consensus       342 ~nNtv~~ysl~~s~~~~p~~~~~~~i-~~~GHR~dVRsl~--vS~d~~~~~Sga~--~SikiWn~~t~kciRTi~~-~y~  415 (888)
T KOG0306|consen  342 ANNTVEWYSLENSGKTSPEADRTSNI-EIGGHRSDVRSLC--VSSDSILLASGAG--ESIKIWNRDTLKCIRTITC-GYI  415 (888)
T ss_pred             ecCceEEEEeccCCCCCcccccccee-eeccchhheeEEE--eecCceeeeecCC--CcEEEEEccCcceeEEecc-ccE
Confidence            467888888775 222      1112 2235667788888  9999998888887  7999999998887655444 488


Q ss_pred             eEEEECCCCCEEEEecCCCcEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhccccc
Q 014475           84 KPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRA  163 (424)
Q Consensus        84 ~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~  163 (424)
                      .+..|-|.++++++|...|.+.+||+.+...+.+.+.|.+.|++++.+||++.+++||.|.+|++||..-... ......
T Consensus       416 l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~-~~gt~~  494 (888)
T KOG0306|consen  416 LASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVS-VPGTQK  494 (888)
T ss_pred             EEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEec-cCcccc
Confidence            9999999999999999999999999999999999999999999999999999999999999999999854322 000000


Q ss_pred             ccceE--EeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeee-cCcceeEEEECCCCCEEEEEeCCC
Q 014475          164 SHLYL--HSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYAGSRDG  240 (424)
Q Consensus       164 ~~~~~--~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg  240 (424)
                      +...+  ...-.-...|.|+.++|++  ++|+.+--|.+|++|-+++-+....+. |.-||.|+..+||++.+++|+.|.
T Consensus       495 k~lsl~~~rtLel~ddvL~v~~Spdg--k~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADK  572 (888)
T KOG0306|consen  495 KVLSLKHTRTLELEDDVLCVSVSPDG--KLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADK  572 (888)
T ss_pred             eeeeeccceEEeccccEEEEEEcCCC--cEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCC
Confidence            00000  0112245789999999999  999999999999999999988777766 899999999999999999999999


Q ss_pred             cEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCCCcEEEEEeccCCCeeEEEEE
Q 014475          241 SIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVV  319 (424)
Q Consensus       241 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s  319 (424)
                      .|++|-++-+         .+...+.+|...|.++.|.| ...+.++|.|+.|+-||-...+.++.+.+|...|++++.+
T Consensus       573 nVKiWGLdFG---------DCHKS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~  643 (888)
T KOG0306|consen  573 NVKIWGLDFG---------DCHKSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVS  643 (888)
T ss_pred             ceEEeccccc---------hhhhhhhcccCceeEEEEcccceeEEEecCcceEEeechhhhhhheeeccchheeeeeEEc
Confidence            9999999997         56778889999999999999 8899999999999999999999999999999999999999


Q ss_pred             ecCceeeeccCCCceeeccCCCCCCC
Q 014475          320 RRPLYLNLGSFSNPHTSSRRHGSQLP  345 (424)
Q Consensus       320 ~~~~~l~~~~~d~~i~iw~~~~~~~~  345 (424)
                      |+|.+++++|.|.+|++|......++
T Consensus       644 ~~G~~vvs~shD~sIRlwE~tde~~~  669 (888)
T KOG0306|consen  644 PNGSFVVSSSHDKSIRLWERTDEILI  669 (888)
T ss_pred             CCCCeEEeccCCceeEeeeccCccee
Confidence            99999999999999999998765443

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=1.1e-36  Score=246.52  Aligned_cols=274  Identities=24%  Similarity=0.379  Sum_probs=243.6

Q ss_pred             eEEecceeecCCCccccCCCCceeEEEEECCCCceee---------eecCCCCeeEEEECCCCCEEEEecCCCcEEEEEc
Q 014475           39 LACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEV---------KSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEV  109 (424)
Q Consensus        39 v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~---------~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~  109 (424)
                      +.|..  |+|||++|++++.| |.|.+||..+++...         ...+.++|.|+.||.|..++|+|+.||.|++|.+
T Consensus       216 ~EcA~--FSPDgqyLvsgSvD-GFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri  292 (508)
T KOG0275|consen  216 VECAR--FSPDGQYLVSGSVD-GFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRI  292 (508)
T ss_pred             hhhee--eCCCCceEeecccc-ceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEE
Confidence            44444  99999999999998 999999998876431         1236789999999999999999999999999999


Q ss_pred             cCcceeeeec-cccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCc
Q 014475          110 ASGRLLKKWH-AHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGV  188 (424)
Q Consensus       110 ~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  188 (424)
                      ++|.+++.+. .|...|+|+.|+.|+..+++++.|.++++.-+.+           .+.++.+.+|.+.|+...|.++| 
T Consensus       293 ~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKS-----------GK~LKEfrGHsSyvn~a~ft~dG-  360 (508)
T KOG0275|consen  293 ETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKS-----------GKCLKEFRGHSSYVNEATFTDDG-  360 (508)
T ss_pred             ecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEecccc-----------chhHHHhcCccccccceEEcCCC-
Confidence            9999999996 8999999999999999999999999999999944           56788899999999999999999 


Q ss_pred             eeEEEEEeCCCcEEEEecCCCceeeeee---cCcceeEEEECC-CCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeee
Q 014475          189 SATIVSASEDRTCKVWSLLKGRLLRNIV---FPSVIDAIALDP-AEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGS  264 (424)
Q Consensus       189 ~~~l~~~~~d~~v~iwd~~~~~~~~~~~---~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~  264 (424)
                       ..+++++.||+|++|+..+.+++.++.   .+.+|+.+-.-| +...++++...+++++.++...          .+..
T Consensus       361 -~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQ----------vVrs  429 (508)
T KOG0275|consen  361 -HHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQ----------VVRS  429 (508)
T ss_pred             -CeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccce----------EEee
Confidence             899999999999999999999998887   446788888877 5678999999999999999873          4444


Q ss_pred             ecc---cCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCCCcEEEEEeccCCCeeEEEEEecCceeeeccCCCceeecc
Q 014475          265 LSD---HSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSR  338 (424)
Q Consensus       265 ~~~---~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~d~~i~iw~  338 (424)
                      +..   ..+...+...+| |.++.+.++|+.++.|.+.+|++-+++..|...|-.++-+|..+.||+-+.||.+++|.
T Consensus       430 fsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHPHqNllAsYsEDgllKLWk  507 (508)
T KOG0275|consen  430 FSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIGLTHHPHQNLLASYSEDGLLKLWK  507 (508)
T ss_pred             eccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeecccccccccccCcccchhhhhcccchhhhcC
Confidence            432   345566677889 99999999999999999999999999999999999999999999999999999999996

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=100.00  E-value=2e-36  Score=257.03  Aligned_cols=266  Identities=16%  Similarity=0.263  Sum_probs=229.7

Q ss_pred             EEEeecCCCCCceEEEeCCC-CceEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCceeeeecCCC
Q 014475            3 LLIASSSVADTGIGCWDLES-GAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSLPAE   81 (424)
Q Consensus         3 ~~lat~~~~dg~i~vwd~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~~~~~~   81 (424)
                      .+|++++ .|+.|+|||+-. +++++++.+|..   +|..+.  |+.+|..+++++-| +.|++||++++++........
T Consensus       228 hLlLS~g-mD~~vklW~vy~~~~~lrtf~gH~k---~Vrd~~--~s~~g~~fLS~sfD-~~lKlwDtETG~~~~~f~~~~  300 (503)
T KOG0282|consen  228 HLLLSGG-MDGLVKLWNVYDDRRCLRTFKGHRK---PVRDAS--FNNCGTSFLSASFD-RFLKLWDTETGQVLSRFHLDK  300 (503)
T ss_pred             eEEEecC-CCceEEEEEEecCcceehhhhcchh---hhhhhh--ccccCCeeeeeecc-eeeeeeccccceEEEEEecCC
Confidence            4789999 999999999876 889988887664   556666  99999999999998 999999999999999988899


Q ss_pred             CeeEEEECCCC-CEEEEecCCCcEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcc
Q 014475           82 PIKPIAANSHG-TYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECES  160 (424)
Q Consensus        82 ~v~~~~~s~~~-~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~  160 (424)
                      .++|+.|+|++ +.+++|+.|+.|+.||+++++.++.+..|-+.|..+.|-++++++++.+.|+.++||+.+....    
T Consensus       301 ~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~----  376 (503)
T KOG0282|consen  301 VPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVP----  376 (503)
T ss_pred             CceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCcc----
Confidence            99999999988 8899999999999999999999999999999999999999999999999999999999965211    


Q ss_pred             cccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCce---eeeee---cCcceeEEEECCCCCEEE
Q 014475          161 QRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRL---LRNIV---FPSVIDAIALDPAEHVFY  234 (424)
Q Consensus       161 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~---~~~~~---~~~~i~~~~~~~~~~~l~  234 (424)
                          ..  .....+.....++..+|.+  ++++.-+.|+.+.++.+...-.   .+.+.   ..+....+.|||||.+|+
T Consensus       377 ----ik--~i~~~~~hsmP~~~~~P~~--~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~  448 (503)
T KOG0282|consen  377 ----IK--NIADPEMHTMPCLTLHPNG--KWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLC  448 (503)
T ss_pred             ----ch--hhcchhhccCcceecCCCC--CeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEE
Confidence                11  1122334456678888988  8999999999999998653211   11222   346677889999999999


Q ss_pred             EEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC--CCEEEEeCCCCcEEEEe
Q 014475          235 AGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST--GDLLISGSEDGMVRVWD  296 (424)
Q Consensus       235 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~l~t~~~dg~i~iwd  296 (424)
                      +|..||.+.+||.++.         +.+..+++|..++..+.|+|  ...+||++.||.|++||
T Consensus       449 SGdsdG~v~~wdwkt~---------kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd  503 (503)
T KOG0282|consen  449 SGDSDGKVNFWDWKTT---------KLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD  503 (503)
T ss_pred             eecCCccEEEeechhh---------hhhhccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence            9999999999999996         67888999999999999999  78999999999999997

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.8e-35  Score=268.15  Aligned_cols=282  Identities=20%  Similarity=0.316  Sum_probs=248.0

Q ss_pred             CceEEecceeecCCCccccCCCCceeEEEEECCCCceeee-ecCCCCeeEEEECCCCCEEEEecCCCcEEEEEccCccee
Q 014475           37 HGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVK-SLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLL  115 (424)
Q Consensus        37 ~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~  115 (424)
                      ..+..++  |+|...+++++-.+ |.|++||.+-+...-+ ..|.++|..++|+|++.++++|+.|-.|++|+..+.+++
T Consensus        10 sRvKgls--FHP~rPwILtslHs-G~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrcl   86 (1202)
T KOG0292|consen   10 SRVKGLS--FHPKRPWILTSLHS-GVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCL   86 (1202)
T ss_pred             cccccee--cCCCCCEEEEeecC-ceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccceeh
Confidence            4455666  99999999999888 9999999987776544 458999999999999999999999999999999999999


Q ss_pred             eeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEE
Q 014475          116 KKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSA  195 (424)
Q Consensus       116 ~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~  195 (424)
                      .++.+|.+.|..+.|++.-.+++++|.|.+|+||+.           ....++..+.+|...|.|..|+|..  ..++++
T Consensus        87 ftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNw-----------qsr~~iavltGHnHYVMcAqFhptE--DlIVSa  153 (1202)
T KOG0292|consen   87 FTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNW-----------QSRKCIAVLTGHNHYVMCAQFHPTE--DLIVSA  153 (1202)
T ss_pred             hhhccccceeEEeeccCCCceEEEccCCCeEEEEec-----------cCCceEEEEecCceEEEeeccCCcc--ceEEEe
Confidence            999999999999999999999999999999999999           4567889999999999999999987  899999


Q ss_pred             eCCCcEEEEecCCCc----------------------------eee-eee-cCcceeEEEECCCCCEEEEEeCCCcEEEE
Q 014475          196 SEDRTCKVWSLLKGR----------------------------LLR-NIV-FPSVIDAIALDPAEHVFYAGSRDGSIYIA  245 (424)
Q Consensus       196 ~~d~~v~iwd~~~~~----------------------------~~~-~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~  245 (424)
                      |-|.+|++||+..-+                            .++ .+. |...|+-++|+|.-..+++|++|..|++|
T Consensus       154 SLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlW  233 (1202)
T KOG0292|consen  154 SLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLW  233 (1202)
T ss_pred             cccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEE
Confidence            999999999985210                            011 112 67789999999999999999999999999


Q ss_pred             EcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCCCcEEEEEeccCCCeeEEEEEecCce
Q 014475          246 ALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLY  324 (424)
Q Consensus       246 d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~  324 (424)
                      .+...+       .-.+.+.++|.+.|.++-|+| .+++++.|+|++|++||+...+.+++|+...+.-+.++.+|..++
T Consensus       234 rmnetK-------aWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrrendRFW~laahP~lNL  306 (1202)
T KOG0292|consen  234 RMNETK-------AWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRRENDRFWILAAHPELNL  306 (1202)
T ss_pred             Eecccc-------ceeehhhhcccCCcceEEecCccceeEecCCCccEEEEecccccceeeeeccCCeEEEEEecCCcce
Confidence            998754       245677889999999999999 999999999999999999999999999988889999999999988


Q ss_pred             eeeccCCCceeeccCCCC
Q 014475          325 LNLGSFSNPHTSSRRHGS  342 (424)
Q Consensus       325 l~~~~~d~~i~iw~~~~~  342 (424)
                      +++|- |+-+.++.++..
T Consensus       307 fAAgH-DsGm~VFkleRE  323 (1202)
T KOG0292|consen  307 FAAGH-DSGMIVFKLERE  323 (1202)
T ss_pred             eeeec-CCceEEEEEccc
Confidence            87764 555666666533

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=100.00  E-value=3.5e-36  Score=234.89  Aligned_cols=288  Identities=16%  Similarity=0.229  Sum_probs=251.0

Q ss_pred             CCCCCCCceEEecceee---cCCCccccCCCCceeEEEEECCCCcee-eeecCCCCeeEEEECCCCCEEEEecCCCcEEE
Q 014475           31 SCASPPHGLACVGQRFL---ASSQLREQPSASSGSILYWSWSKPQVE-VKSLPAEPIKPIAANSHGTYIAGGGQSGDIYM  106 (424)
Q Consensus        31 ~~~~~~~~v~~~~~~~~---~~~~~l~~~~~~~g~i~vwd~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~i  106 (424)
                      .+.+|.++|..++  |+   |+|-+|++++.| |.-.+-+=+++... ....|.+.|.....+.+....|+++.|-+-++
T Consensus         9 ~c~ghtrpvvdl~--~s~itp~g~flisa~kd-~~pmlr~g~tgdwigtfeghkgavw~~~l~~na~~aasaaadftakv   85 (334)
T KOG0278|consen    9 TCHGHTRPVVDLA--FSPITPDGYFLISASKD-GKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKV   85 (334)
T ss_pred             EEcCCCcceeEEe--ccCCCCCceEEEEeccC-CCchhccCCCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhh
Confidence            3456777888887  66   688899999997 88777776666644 45679999999999999999999999999999


Q ss_pred             EEccCcceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEc
Q 014475          107 WEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYG  186 (424)
Q Consensus       107 wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  186 (424)
                      ||.-+|..+.++. |..-|..++|+.|.++|++|+.+..+++||++.          ...+...+.+|.+.|..+.|+..
T Consensus        86 w~a~tgdelhsf~-hkhivk~~af~~ds~~lltgg~ekllrvfdln~----------p~App~E~~ghtg~Ir~v~wc~e  154 (334)
T KOG0278|consen   86 WDAVTGDELHSFE-HKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNR----------PKAPPKEISGHTGGIRTVLWCHE  154 (334)
T ss_pred             hhhhhhhhhhhhh-hhheeeeEEecccchhhhccchHHHhhhhhccC----------CCCCchhhcCCCCcceeEEEecc
Confidence            9999999999987 888999999999999999999999999999965          23345678899999999999988


Q ss_pred             CceeEEEEEeCCCcEEEEecCCCceeeeeecCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeec
Q 014475          187 GVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLS  266 (424)
Q Consensus       187 ~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~  266 (424)
                      .  +.+++++.|++||+||.+++..++.+..+.+++++.++++|+++.++ ..+.|.+||..+-         .++....
T Consensus       155 D--~~iLSSadd~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~dG~ilTia-~gssV~Fwdaksf---------~~lKs~k  222 (334)
T KOG0278|consen  155 D--KCILSSADDKTVRLWDHRTGTEVQSLEFNSPVTSLEVSQDGRILTIA-YGSSVKFWDAKSF---------GLLKSYK  222 (334)
T ss_pred             C--ceEEeeccCCceEEEEeccCcEEEEEecCCCCcceeeccCCCEEEEe-cCceeEEeccccc---------cceeecc
Confidence            7  88899999999999999999999999999999999999999977665 4567999999885         3333332


Q ss_pred             ccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCCCcEEEEE-eccCCCeeEEEEEecCceeeeccCCCceeeccCCCCCC
Q 014475          267 DHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMF-RLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGSQL  344 (424)
Q Consensus       267 ~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~~~~~-~~~~~~v~~l~~s~~~~~l~~~~~d~~i~iw~~~~~~~  344 (424)
                       -...|.+...+| ...+++|++|..++.||..+++.+..+ ++|.++|.++.|+|+|..-++||.||+|++|.....+.
T Consensus       223 -~P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~~  301 (334)
T KOG0278|consen  223 -MPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGKT  301 (334)
T ss_pred             -CccccccccccCCCceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEecCCCc
Confidence             456789999999 889999999999999999999999986 89999999999999999999999999999999886655


Q ss_pred             C
Q 014475          345 P  345 (424)
Q Consensus       345 ~  345 (424)
                      .
T Consensus       302 ~  302 (334)
T KOG0278|consen  302 Y  302 (334)
T ss_pred             h
Confidence            4

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=3.1e-35  Score=230.12  Aligned_cols=259  Identities=17%  Similarity=0.241  Sum_probs=221.9

Q ss_pred             eeEEEEECCCCc-ee--eeecCCCCeeEEEECCC-CCEEEEecCCCcEEEEEccC-cceeeeeccccCCeEEEEEcc-CC
Q 014475           61 GSILYWSWSKPQ-VE--VKSLPAEPIKPIAANSH-GTYIAGGGQSGDIYMWEVAS-GRLLKKWHAHYRAVTCLVFSE-DG  134 (424)
Q Consensus        61 g~i~vwd~~~~~-~~--~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~v~iwd~~~-~~~~~~~~~~~~~i~~~~~~~-~~  134 (424)
                      |.+.|-+...+. +.  ....-.+.+..++|+++ .+.+++++.||++++||+.. ..++..++.|..+|.++.|++ +.
T Consensus        38 G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r  117 (311)
T KOG0277|consen   38 GRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRR  117 (311)
T ss_pred             ceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccc
Confidence            899999996333 22  22345789999999995 56788889999999999743 367888999999999999998 56


Q ss_pred             cEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeee
Q 014475          135 SFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRN  214 (424)
Q Consensus       135 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~  214 (424)
                      +.+++++.|++|++|+.           ..+..+.++.+|...|...+|+|... +.+++++.|+++++||++..-....
T Consensus       118 ~~~ltsSWD~TiKLW~~-----------~r~~Sv~Tf~gh~~~Iy~a~~sp~~~-nlfas~Sgd~~l~lwdvr~~gk~~~  185 (311)
T KOG0277|consen  118 RIFLTSSWDGTIKLWDP-----------NRPNSVQTFNGHNSCIYQAAFSPHIP-NLFASASGDGTLRLWDVRSPGKFMS  185 (311)
T ss_pred             eeEEeeccCCceEeecC-----------CCCcceEeecCCccEEEEEecCCCCC-CeEEEccCCceEEEEEecCCCceeE
Confidence            67888899999999999           44556788999999999999999865 8999999999999999986433333


Q ss_pred             ee-cCcceeEEEECC-CCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC--CCEEEEeCCCC
Q 014475          215 IV-FPSVIDAIALDP-AEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST--GDLLISGSEDG  290 (424)
Q Consensus       215 ~~-~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~l~t~~~dg  290 (424)
                      +. |...+.++.|+. +.+.+++|+.|+.|+.||+++-.        .++..+.+|.-.|..++|+|  ...|++++.|-
T Consensus       186 i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r--------~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDm  257 (311)
T KOG0277|consen  186 IEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLR--------TPLFELNGHGLAVRKVKFSPHHASLLASASYDM  257 (311)
T ss_pred             EEeccceeEeecccccCCcEEEecCCCceEEEEehhhcc--------ccceeecCCceEEEEEecCcchhhHhhhccccc
Confidence            55 788999999998 67889999999999999999976        66888999999999999999  88999999999


Q ss_pred             cEEEEeCCCC-cEEEEEeccCCCeeEEEEEe-cCceeeeccCCCceeeccC
Q 014475          291 MVRVWDPITH-NIVRMFRLAKGPVNNILVVR-RPLYLNLGSFSNPHTSSRR  339 (424)
Q Consensus       291 ~i~iwd~~~~-~~~~~~~~~~~~v~~l~~s~-~~~~l~~~~~d~~i~iw~~  339 (424)
                      +++|||...+ ..+.+...|..-|..+.|++ ++.++|+.+.|+.+++|+.
T Consensus       258 T~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p  308 (311)
T KOG0277|consen  258 TVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP  308 (311)
T ss_pred             eEEecccccchhhhhhhhccceEEeccccccccCceeeecccccceeeecc
Confidence            9999999854 56677778999999999997 5679999999999999985

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=1.3e-34  Score=266.63  Aligned_cols=254  Identities=24%  Similarity=0.412  Sum_probs=227.1

Q ss_pred             CCCCeeEEEECCCCCEEEEecCCCcEEEEEccCcc--eeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccc
Q 014475           79 PAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGR--LLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFE  156 (424)
Q Consensus        79 ~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~--~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~  156 (424)
                      +...|.++.|+++|+++++++.++.+++|+..+.+  ....+.+|...|.+++|+|+++++++++.|++|++||+..   
T Consensus       158 ~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~---  234 (456)
T KOG0266|consen  158 ECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKD---  234 (456)
T ss_pred             ccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEeeccC---
Confidence            46789999999999999999999999999998777  7777889999999999999999999999999999999933   


Q ss_pred             hhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeee-cCcceeEEEECCCCCEEEE
Q 014475          157 ECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYA  235 (424)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~  235 (424)
                             ....++++.+|...|++++|+|.+  +.+++|+.|++|++||++++++...+. |...|++++|+++++++++
T Consensus       235 -------~~~~~~~l~gH~~~v~~~~f~p~g--~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s  305 (456)
T KOG0266|consen  235 -------DGRNLKTLKGHSTYVTSVAFSPDG--NLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVS  305 (456)
T ss_pred             -------CCeEEEEecCCCCceEEEEecCCC--CEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEE
Confidence                   345678899999999999999999  899999999999999999999999998 8899999999999999999


Q ss_pred             EeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcC--eEEEEecC-CCEEEEeCCCCcEEEEeCCCCcEEEEEeccCCC
Q 014475          236 GSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKA--VTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGP  312 (424)
Q Consensus       236 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~--i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~  312 (424)
                      ++.|+.|++||+.++...       +...+.++...  ++++.|+| +.+++++..|+.+++||+..+..+..+.+|...
T Consensus       306 ~s~d~~i~vwd~~~~~~~-------~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~  378 (456)
T KOG0266|consen  306 ASYDGTIRVWDLETGSKL-------CLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNL  378 (456)
T ss_pred             cCCCccEEEEECCCCcee-------eeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCc
Confidence            999999999999997411       34556665555  99999999 999999999999999999999999999999874


Q ss_pred             ---eeEEEEEecCceeeeccCCCceeeccCCCCCCCCCcccc
Q 014475          313 ---VNNILVVRRPLYLNLGSFSNPHTSSRRHGSQLPPPLDKY  351 (424)
Q Consensus       313 ---v~~l~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~  351 (424)
                         +.+...++.+.++++|+.|+.|.+|+..+....+.+..+
T Consensus       379 ~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h  420 (456)
T KOG0266|consen  379 VRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGH  420 (456)
T ss_pred             ceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhhcCC
Confidence               444455789999999999999999999987666555555

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=100.00  E-value=8.8e-36  Score=243.30  Aligned_cols=269  Identities=21%  Similarity=0.343  Sum_probs=230.7

Q ss_pred             EEeecCCCCCceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCcee-eeecCCCC
Q 014475            4 LIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVE-VKSLPAEP   82 (424)
Q Consensus         4 ~lat~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~-~~~~~~~~   82 (424)
                      .+++|. .|.+|+|||..+-.+++.+.+|.   +.|.|+.  |  +.+.+++|++| .+|++||++++++. ....|.+.
T Consensus       209 kiVSGl-rDnTikiWD~n~~~c~~~L~GHt---GSVLCLq--y--d~rviisGSSD-sTvrvWDv~tge~l~tlihHcea  279 (499)
T KOG0281|consen  209 KIVSGL-RDNTIKIWDKNSLECLKILTGHT---GSVLCLQ--Y--DERVIVSGSSD-STVRVWDVNTGEPLNTLIHHCEA  279 (499)
T ss_pred             hhhccc-ccCceEEeccccHHHHHhhhcCC---CcEEeee--c--cceEEEecCCC-ceEEEEeccCCchhhHHhhhcce
Confidence            478899 99999999999988888777655   6688877  4  56688888887 99999999999876 44668899


Q ss_pred             eeEEEECCCCCEEEEecCCCcEEEEEccCcc---eeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhc
Q 014475           83 IKPIAANSHGTYIAGGGQSGDIYMWEVASGR---LLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECE  159 (424)
Q Consensus        83 v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~---~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~  159 (424)
                      |..+.|+  ..++++++.|.++.+||+....   +.+.+.+|...|+.+.|+  .+++++++.|.+|++|++.+      
T Consensus       280 VLhlrf~--ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd--~kyIVsASgDRTikvW~~st------  349 (499)
T KOG0281|consen  280 VLHLRFS--NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWSTST------  349 (499)
T ss_pred             eEEEEEe--CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc--cceEEEecCCceEEEEeccc------
Confidence            9999997  5699999999999999998764   345678999999999997  66999999999999999955      


Q ss_pred             ccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeee-cCcceeEEEECCCCCEEEEEeC
Q 014475          160 SQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYAGSR  238 (424)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~  238 (424)
                           ..++.++.+|+..|.|+.+.  +  +++++|+.|.+|++||+..|.+++.++ |..-|.++.|  +.+.+++|..
T Consensus       350 -----~efvRtl~gHkRGIAClQYr--~--rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRF--d~krIVSGaY  418 (499)
T KOG0281|consen  350 -----CEFVRTLNGHKRGIACLQYR--D--RLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSGAY  418 (499)
T ss_pred             -----eeeehhhhcccccceehhcc--C--eEEEecCCCceEEEEeccccHHHHHHhchHHhhhheee--cCceeeeccc
Confidence                 55788899999999888763  3  899999999999999999999999998 8899999999  5778999999


Q ss_pred             CCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecCCCEEEEeCCCCcEEEEeCCCCcEE
Q 014475          239 DGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTGDLLISGSEDGMVRVWDPITHNIV  303 (424)
Q Consensus       239 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~  303 (424)
                      ||+|++||+........+...-++..+..|.+.|..+.|. ...+++++.|.+|.|||..++.+-
T Consensus       419 DGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD-~fqIvsssHddtILiWdFl~~~~~  482 (499)
T KOG0281|consen  419 DGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFD-EFQIISSSHDDTILIWDFLNGPPS  482 (499)
T ss_pred             cceEEEEecccccCCcccccchHHHhhhhccceeEEEeec-ceEEEeccCCCeEEEEEcCCCCcc
Confidence            9999999999887655444445677788899999999997 567888899999999998876543

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=4.5e-34  Score=243.21  Aligned_cols=287  Identities=22%  Similarity=0.326  Sum_probs=246.5

Q ss_pred             CCCceEEecceeecCCCc-cccCCCCceeEEEEECCCCceee-eecCCCCeeEEEECCCCCEEEEecCCCcEEEEEccCc
Q 014475           35 PPHGLACVGQRFLASSQL-REQPSASSGSILYWSWSKPQVEV-KSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASG  112 (424)
Q Consensus        35 ~~~~v~~~~~~~~~~~~~-l~~~~~~~g~i~vwd~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~  112 (424)
                      ..+.|.+++  |+|...+ +|++++  -.+.+|+..+..... .......|.++.|..||++||+|+..|.|+|||..+.
T Consensus        25 e~~~vssl~--fsp~~P~d~aVt~S--~rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r  100 (487)
T KOG0310|consen   25 EHNSVSSLC--FSPKHPYDFAVTSS--VRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSR  100 (487)
T ss_pred             ccCcceeEe--cCCCCCCceEEecc--cEEEEEecchhhhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEeccccH
Confidence            346788888  9997665 444444  789999987766543 3446789999999999999999999999999998877


Q ss_pred             ceeeeeccccCCeEEEEEcc-CCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeE
Q 014475          113 RLLKKWHAHYRAVTCLVFSE-DGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSAT  191 (424)
Q Consensus       113 ~~~~~~~~~~~~i~~~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~  191 (424)
                      ..++.+.+|..++..+.|+| ++..+++|+.|+.+++||+.+.           .....+.+|+..|.+.+|+|..+ ..
T Consensus       101 ~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a-----------~v~~~l~~htDYVR~g~~~~~~~-hi  168 (487)
T KOG0310|consen  101 VILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTA-----------YVQAELSGHTDYVRCGDISPAND-HI  168 (487)
T ss_pred             HHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCc-----------EEEEEecCCcceeEeeccccCCC-eE
Confidence            78889999999999999999 5567888999999999999662           23557889999999999999864 68


Q ss_pred             EEEEeCCCcEEEEecCCC-ceeeeeecCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCc
Q 014475          192 IVSASEDRTCKVWSLLKG-RLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSK  270 (424)
Q Consensus       192 l~~~~~d~~v~iwd~~~~-~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~  270 (424)
                      +++|+.||.|++||++.. ..+..+.|..+|..+.+-|.|..+++++. ..+++||+-++.        +.+.....|..
T Consensus       169 vvtGsYDg~vrl~DtR~~~~~v~elnhg~pVe~vl~lpsgs~iasAgG-n~vkVWDl~~G~--------qll~~~~~H~K  239 (487)
T KOG0310|consen  169 VVTGSYDGKVRLWDTRSLTSRVVELNHGCPVESVLALPSGSLIASAGG-NSVKVWDLTTGG--------QLLTSMFNHNK  239 (487)
T ss_pred             EEecCCCceEEEEEeccCCceeEEecCCCceeeEEEcCCCCEEEEcCC-CeEEEEEecCCc--------eehhhhhcccc
Confidence            999999999999999987 78888999999999999999999988764 479999999775        56666667999


Q ss_pred             CeEEEEecC-CCEEEEeCCCCcEEEEeCCCCcEEEEEeccCCCeeEEEEEecCceeeeccCCCceeeccCCCCCCCCC
Q 014475          271 AVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGSQLPPP  347 (424)
Q Consensus       271 ~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~  347 (424)
                      .|+|+.+.. +..|++|+-|+.|++||+.+.+.+..+. ..+||-+++.+|+++.++.|..||.+.+-+....+...+
T Consensus       240 tVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~-~~~pvLsiavs~dd~t~viGmsnGlv~~rr~~~k~k~s~  316 (487)
T KOG0310|consen  240 TVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWK-YPGPVLSIAVSPDDQTVVIGMSNGLVSIRRREVKKKPSK  316 (487)
T ss_pred             eEEEEEeecCCceEeecccccceEEEEccceEEEEeee-cccceeeEEecCCCceEEEecccceeeeehhhcccCCCc
Confidence            999999988 8999999999999999999999999987 679999999999999999999999988876655544433

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=100.00  E-value=2.5e-33  Score=246.02  Aligned_cols=265  Identities=29%  Similarity=0.514  Sum_probs=230.4

Q ss_pred             EEEeecCCCCCceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCcee-eeecCCC
Q 014475            3 LLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVE-VKSLPAE   81 (424)
Q Consensus         3 ~~lat~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~-~~~~~~~   81 (424)
                      .+|++++ .||.|++||+.+++....+..+.   ..+..+.  |.|+++.+++++.+ |.|++|++.+.+.. ....|..
T Consensus        22 ~~l~~~~-~~g~i~i~~~~~~~~~~~~~~~~---~~i~~~~--~~~~~~~l~~~~~~-~~i~i~~~~~~~~~~~~~~~~~   94 (289)
T cd00200          22 KLLATGS-GDGTIKVWDLETGELLRTLKGHT---GPVRDVA--ASADGTYLASGSSD-KTIRLWDLETGECVRTLTGHTS   94 (289)
T ss_pred             CEEEEee-cCcEEEEEEeeCCCcEEEEecCC---cceeEEE--ECCCCCEEEEEcCC-CeEEEEEcCcccceEEEeccCC
Confidence            4688888 89999999999988777776554   4556677  99999999999987 99999999975443 3345677


Q ss_pred             CeeEEEECCCCCEEEEecCCCcEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhccc
Q 014475           82 PIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQ  161 (424)
Q Consensus        82 ~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~  161 (424)
                      .+.++.|+|+++++++++.+|.|.+||+.+++....+..|...+.++.|+|++.++++++.||.|++||+++        
T Consensus        95 ~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~--------  166 (289)
T cd00200          95 YVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRT--------  166 (289)
T ss_pred             cEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccc--------
Confidence            999999999999999988899999999998988888888999999999999988888888899999999954        


Q ss_pred             ccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeee-ecCcceeEEEECCCCCEEEEEeCCC
Q 014475          162 RASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNI-VFPSVIDAIALDPAEHVFYAGSRDG  240 (424)
Q Consensus       162 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~dg  240 (424)
                         ......+..|...+.++.|++++  +.+++++.++.+++||+++++.+..+ .+...+.+++|+|++.++++++.+|
T Consensus       167 ---~~~~~~~~~~~~~i~~~~~~~~~--~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~  241 (289)
T cd00200         167 ---GKCVATLTGHTGEVNSVAFSPDG--EKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDG  241 (289)
T ss_pred             ---cccceeEecCccccceEEECCCc--CEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEEcCCC
Confidence               23445566888899999999998  78899999999999999998888888 5788999999999988888888899


Q ss_pred             cEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEe
Q 014475          241 SIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWD  296 (424)
Q Consensus       241 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd  296 (424)
                      .+++|++...         .....+..|...|.+++|+| +.++++++.||.|++|+
T Consensus       242 ~i~i~~~~~~---------~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~  289 (289)
T cd00200         242 TIRVWDLRTG---------ECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD  289 (289)
T ss_pred             cEEEEEcCCc---------eeEEEccccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence            9999999875         45666778999999999999 89999999999999996

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.4e-33  Score=246.86  Aligned_cols=276  Identities=18%  Similarity=0.268  Sum_probs=238.1

Q ss_pred             EEeecCCCCCceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCcee-eeecCCCC
Q 014475            4 LIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVE-VKSLPAEP   82 (424)
Q Consensus         4 ~lat~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~-~~~~~~~~   82 (424)
                      .+.++- -+|.|.|||.++...++.+.-...+++   +..  |.+--+++++|+.| ..|+|++..+.+.. ....|.+-
T Consensus        27 w~la~L-ynG~V~IWnyetqtmVksfeV~~~PvR---a~k--fiaRknWiv~GsDD-~~IrVfnynt~ekV~~FeAH~Dy   99 (794)
T KOG0276|consen   27 WILAAL-YNGDVQIWNYETQTMVKSFEVSEVPVR---AAK--FIARKNWIVTGSDD-MQIRVFNYNTGEKVKTFEAHSDY   99 (794)
T ss_pred             eEEEee-ecCeeEEEecccceeeeeeeecccchh---hhe--eeeccceEEEecCC-ceEEEEecccceeeEEeeccccc
Confidence            345555 689999999999999999987665544   444  77888899998887 99999999988765 44669999


Q ss_pred             eeEEEECCCCCEEEEecCCCcEEEEEccCc-ceeeeeccccCCeEEEEEcc-CCcEEEEeeCCCcEEEEeCCcccchhcc
Q 014475           83 IKPIAANSHGTYIAGGGQSGDIYMWEVASG-RLLKKWHAHYRAVTCLVFSE-DGSFLISGSEDGCVRIWSLLTVFEECES  160 (424)
Q Consensus        83 v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~-~~~~~~~~~~~~i~~~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~  160 (424)
                      |++++.+|...++++++.|-.|++||.+.+ .+.+++.+|...|.+++|.| |.+.+++++-|++|++|.+         
T Consensus       100 IR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWsl---------  170 (794)
T KOG0276|consen  100 IRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSL---------  170 (794)
T ss_pred             eeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEc---------
Confidence            999999999999999999999999999866 77889999999999999999 7789999999999999999         


Q ss_pred             cccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeee-cCcceeEEEECCCCCEEEEEeCC
Q 014475          161 QRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYAGSRD  239 (424)
Q Consensus       161 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~d  239 (424)
                        ....+..++++|...|+++.+-+.++..+|++|+.|.++++||..+..+++++. |...|..++|+|.=.++++|+.|
T Consensus       171 --gs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiiisgsED  248 (794)
T KOG0276|consen  171 --GSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIIISGSED  248 (794)
T ss_pred             --CCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecCCCcEEEEecCC
Confidence              456677889999999999999998887899999999999999999999999998 99999999999999999999999


Q ss_pred             CcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCCCcEEEEEe
Q 014475          240 GSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFR  307 (424)
Q Consensus       240 g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~~~~~~  307 (424)
                      |+++||+..+-         +....+.-.-..+.|++-.+ ++.++.|.++|.| +..+-..++..++.
T Consensus       249 GTvriWhs~Ty---------~lE~tLn~gleRvW~I~~~k~~~~i~vG~Deg~i-~v~lgreeP~vsMd  307 (794)
T KOG0276|consen  249 GTVRIWNSKTY---------KLEKTLNYGLERVWCIAAHKGDGKIAVGFDEGSV-TVKLGREEPAVSMD  307 (794)
T ss_pred             ccEEEecCcce---------ehhhhhhcCCceEEEEeecCCCCeEEEeccCCcE-EEEccCCCCceeec
Confidence            99999998885         44455555668899999888 7778888877765 44555555555554

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=9e-34  Score=219.57  Aligned_cols=249  Identities=18%  Similarity=0.277  Sum_probs=216.6

Q ss_pred             eeeeecCCCCeeEEEECCCCCEEEEecCCCcEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCC
Q 014475           73 VEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLL  152 (424)
Q Consensus        73 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~  152 (424)
                      ......++++|.++.|+-||+|.++++.|.+|++|++..+.+++++.+|..+|..++.+.|...|++|+.|..+.+||++
T Consensus        10 ~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~   89 (307)
T KOG0316|consen   10 LSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVN   89 (307)
T ss_pred             ceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEcc
Confidence            33445678999999999999999999999999999999999999999999999999999999999999999999999996


Q ss_pred             cccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCC--ceeeeee-cCcceeEEEECCC
Q 014475          153 TVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKG--RLLRNIV-FPSVIDAIALDPA  229 (424)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~--~~~~~~~-~~~~i~~~~~~~~  229 (424)
                      +           .+..+.+.+|...|+.+.|+.+.  ..+++|+.|.++++||.++.  ++++.+. ....|.++..  .
T Consensus        90 T-----------Gkv~Rr~rgH~aqVNtV~fNees--SVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v--~  154 (307)
T KOG0316|consen   90 T-----------GKVDRRFRGHLAQVNTVRFNEES--SVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDV--A  154 (307)
T ss_pred             c-----------CeeeeecccccceeeEEEecCcc--eEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEe--c
Confidence            6           45678899999999999999888  89999999999999999864  4566555 5677888877  4


Q ss_pred             CCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCCCcEEEEEec
Q 014475          230 EHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRL  308 (424)
Q Consensus       230 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~~~~~~~  308 (424)
                      +..+++|+.||+++.||++.+.         .....  ...+|++++|++ ++..+.++.|+++++.|-.+|++++.+++
T Consensus       155 ~heIvaGS~DGtvRtydiR~G~---------l~sDy--~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkG  223 (307)
T KOG0316|consen  155 EHEIVAGSVDGTVRTYDIRKGT---------LSSDY--FGHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKG  223 (307)
T ss_pred             ccEEEeeccCCcEEEEEeecce---------eehhh--cCCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcc
Confidence            6679999999999999999984         22222  457899999999 99999999999999999999999999999


Q ss_pred             cCCCeeE--EEEEecCceeeeccCCCceeeccCCCCCCCCC
Q 014475          309 AKGPVNN--ILVVRRPLYLNLGSFSNPHTSSRRHGSQLPPP  347 (424)
Q Consensus       309 ~~~~v~~--l~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~  347 (424)
                      |.+.-..  .+++.....+++|++||.+.+||+........
T Consensus       224 hkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk  264 (307)
T KOG0316|consen  224 HKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQISK  264 (307)
T ss_pred             cccceeeeeeeecccceeEEeccCCceEEEEEeccceeeee
Confidence            9875444  45666677899999999999999987655433

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=5.9e-34  Score=237.47  Aligned_cols=269  Identities=19%  Similarity=0.337  Sum_probs=225.0

Q ss_pred             EEEeecCCCCCceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCceeeeec--CC
Q 014475            3 LLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSL--PA   80 (424)
Q Consensus         3 ~~lat~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~~~--~~   80 (424)
                      .+|||++ +|.+..+|++.....++-.+...+|..+|..+.  |+||.+++++++.+ ..+.+||+.++.......  +.
T Consensus       237 kyLAsaS-kD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~--wSPDdryLlaCg~~-e~~~lwDv~tgd~~~~y~~~~~  312 (519)
T KOG0293|consen  237 KYLASAS-KDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIM--WSPDDRYLLACGFD-EVLSLWDVDTGDLRHLYPSGLG  312 (519)
T ss_pred             eeEeecc-CCceEEEEEEecCcceeeeeeeecccCceEEEE--ECCCCCeEEecCch-HheeeccCCcchhhhhcccCcC
Confidence            4899999 999999999887766555556667778899988  99999999999998 889999999998765544  45


Q ss_pred             CCeeEEEECCCCCEEEEecCCCcEEEEEccCcceeeeeccc-cCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhc
Q 014475           81 EPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAH-YRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECE  159 (424)
Q Consensus        81 ~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~-~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~  159 (424)
                      ..+.+++|.|||..+++|+.|+++..||++ |......++- ...|.+++..+||+++++.+.|..|++++.++...   
T Consensus       313 ~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlD-gn~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~d---  388 (519)
T KOG0293|consen  313 FSVSSCAWCPDGFRFVTGSPDRTIIMWDLD-GNILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVD---  388 (519)
T ss_pred             CCcceeEEccCCceeEecCCCCcEEEecCC-cchhhcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhh---
Confidence            889999999999999999999999999985 4445555443 35699999999999999999999999999865211   


Q ss_pred             ccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeee-cC--cceeEEEECC-CCCEEEE
Q 014475          160 SQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-FP--SVIDAIALDP-AEHVFYA  235 (424)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~-~~--~~i~~~~~~~-~~~~l~~  235 (424)
                               ..+.....+|++++.+.++  +++++.-.+..+++||+...+.++.+. |.  .-+-.-||-- +..++++
T Consensus       389 ---------r~lise~~~its~~iS~d~--k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaS  457 (519)
T KOG0293|consen  389 ---------RGLISEEQPITSFSISKDG--KLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIAS  457 (519)
T ss_pred             ---------hccccccCceeEEEEcCCC--cEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEe
Confidence                     1133356789999999988  899999999999999999887777765 32  2344445554 5689999


Q ss_pred             EeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC--CCEEEEeCCCCcEEEEeCCC
Q 014475          236 GSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST--GDLLISGSEDGMVRVWDPIT  299 (424)
Q Consensus       236 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~l~t~~~dg~i~iwd~~~  299 (424)
                      |+.|+.|+||+..++         +++..+.+|...|++++|+|  ..++|+|++||+||||....
T Consensus       458 GSED~kvyIWhr~sg---------kll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~  514 (519)
T KOG0293|consen  458 GSEDSKVYIWHRISG---------KLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPSD  514 (519)
T ss_pred             cCCCceEEEEEccCC---------ceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEecCCc
Confidence            999999999999997         78999999999999999999  78999999999999998764

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=100.00  E-value=9.7e-34  Score=223.35  Aligned_cols=288  Identities=16%  Similarity=0.217  Sum_probs=238.1

Q ss_pred             CCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCcee-eeecCCCCeeEEEECCCCCEEEEecCCCcEEEEEccC
Q 014475           33 ASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVE-VKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVAS  111 (424)
Q Consensus        33 ~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~  111 (424)
                      .+|.++++.+.  |..+|.+|.+++.| .+..||-..+++.. ....|.+.|+|++.+.+.+++++|+.|.++++||+++
T Consensus         7 ~GHERplTqiK--yN~eGDLlFscaKD-~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~t   83 (327)
T KOG0643|consen    7 QGHERPLTQIK--YNREGDLLFSCAKD-STPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVET   83 (327)
T ss_pred             ccCccccceEE--ecCCCcEEEEecCC-CCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCC
Confidence            34667888888  99999999999998 99999988666554 5678999999999999999999999999999999999


Q ss_pred             cceeeeeccccCCeEEEEEccCCcEEEEeeC-----CCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEc
Q 014475          112 GRLLKKWHAHYRAVTCLVFSEDGSFLISGSE-----DGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYG  186 (424)
Q Consensus       112 ~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~-----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  186 (424)
                      |+++..++ ...+|..+.|+++|++++....     .+.|.++|++.....    .....+...+..+.+.++.+.|.|.
T Consensus        84 Gk~la~~k-~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~----~~s~ep~~kI~t~~skit~a~Wg~l  158 (327)
T KOG0643|consen   84 GKQLATWK-TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSD----IDSEEPYLKIPTPDSKITSALWGPL  158 (327)
T ss_pred             CcEEEEee-cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhh----hcccCceEEecCCccceeeeeeccc
Confidence            99999987 5678999999999998776654     467999999764321    1233456667788899999999999


Q ss_pred             CceeEEEEEeCCCcEEEEecCCCceeeeee--cCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeee
Q 014475          187 GVSATIVSASEDRTCKVWSLLKGRLLRNIV--FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGS  264 (424)
Q Consensus       187 ~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~  264 (424)
                      +  +.|++|.+||.|.+||+++++....-.  |...|+.++++|+..++++++.|.+-++||.++-         ..+.+
T Consensus       159 ~--~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl---------~v~Kt  227 (327)
T KOG0643|consen  159 G--ETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTL---------EVLKT  227 (327)
T ss_pred             C--CEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccce---------eeEEE
Confidence            8  899999999999999999986554443  8889999999999999999999999999999985         44445


Q ss_pred             ecccCcCeEEEEecC-CCEEEEeC-CCCc-E------------EEEeCCCCcEEEEEeccCCCeeEEEEEecCceeeecc
Q 014475          265 LSDHSKAVTCLAYST-GDLLISGS-EDGM-V------------RVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGS  329 (424)
Q Consensus       265 ~~~~~~~i~~~~~~~-~~~l~t~~-~dg~-i------------~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~  329 (424)
                      +. ...||++.+++| .+.++.|+ .+.. |            ++|++-..+.+..+++|-+||++++|+|+|+..++|+
T Consensus       228 y~-te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGG  306 (327)
T KOG0643|consen  228 YT-TERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGG  306 (327)
T ss_pred             ee-ecccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCC
Confidence            43 568999999999 66555554 3321 2            2333333456778889999999999999999999999


Q ss_pred             CCCceeeccCC
Q 014475          330 FSNPHTSSRRH  340 (424)
Q Consensus       330 ~d~~i~iw~~~  340 (424)
                      .||.|++....
T Consensus       307 EDG~VR~h~Fd  317 (327)
T KOG0643|consen  307 EDGYVRLHHFD  317 (327)
T ss_pred             CCceEEEEEec
Confidence            99999988655

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=6.6e-34  Score=258.07  Aligned_cols=256  Identities=17%  Similarity=0.288  Sum_probs=229.1

Q ss_pred             CCCeeEEEECCCCCEEEEecCCCcEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhc
Q 014475           80 AEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECE  159 (424)
Q Consensus        80 ~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~  159 (424)
                      ...|..++|+|...+++++-..|.|++||.+-+.++..+..|.++|..+.|+|.+.++++|+.|..|++|+.        
T Consensus         9 SsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnY--------   80 (1202)
T KOG0292|consen    9 SSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNY--------   80 (1202)
T ss_pred             cccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEec--------
Confidence            568899999999999999999999999999999999999999999999999999999999999999999999        


Q ss_pred             ccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeee-cCcceeEEEECCCCCEEEEEeC
Q 014475          160 SQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYAGSR  238 (424)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~  238 (424)
                         ....++.++.+|-..|..+.|++.-  .+++++|.|.+|+||+..+++++..+. |...|.|.+|+|....+++++-
T Consensus        81 ---k~rrclftL~GHlDYVRt~~FHhey--PWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSL  155 (1202)
T KOG0292|consen   81 ---KTRRCLFTLLGHLDYVRTVFFHHEY--PWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASL  155 (1202)
T ss_pred             ---ccceehhhhccccceeEEeeccCCC--ceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecc
Confidence               4467888999999999999999988  899999999999999999999999998 8999999999999999999999


Q ss_pred             CCcEEEEEcCCCCCCCCCc--------------------CceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeC
Q 014475          239 DGSIYIAALNAESPSTSSY--------------------GMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDP  297 (424)
Q Consensus       239 dg~i~i~d~~~~~~~~~~~--------------------~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~  297 (424)
                      |-+|++||+..-.......                    ..-....+.+|...|+-++|+| -.+|++|++|..|++|.+
T Consensus       156 DQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrm  235 (1202)
T KOG0292|consen  156 DQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRM  235 (1202)
T ss_pred             cceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEe
Confidence            9999999986532211111                    1122345789999999999999 999999999999999998


Q ss_pred             CCCc--EEEEEeccCCCeeEEEEEecCceeeeccCCCceeeccCCCCCCCCCc
Q 014475          298 ITHN--IVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGSQLPPPL  348 (424)
Q Consensus       298 ~~~~--~~~~~~~~~~~v~~l~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~  348 (424)
                      ..-+  .+.+..+|.++|.++.|+|....+++.|.|++|++||+...+..+.+
T Consensus       236 netKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tf  288 (1202)
T KOG0292|consen  236 NETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTF  288 (1202)
T ss_pred             ccccceeehhhhcccCCcceEEecCccceeEecCCCccEEEEecccccceeee
Confidence            7654  45678899999999999999999999999999999999877665444

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=100.00  E-value=1.9e-32  Score=247.30  Aligned_cols=347  Identities=17%  Similarity=0.252  Sum_probs=283.3

Q ss_pred             EEEeecCCCCCceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCceeeeecCC-C
Q 014475            3 LLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSLPA-E   81 (424)
Q Consensus         3 ~~lat~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~~~~~-~   81 (424)
                      +-++.|+ ++|.+.|||+++++.+.+++.+.   .+|+++.  -+|.-..+|+|..+ |+|.++++..++......+. +
T Consensus       173 NKIvvGs-~~G~lql~Nvrt~K~v~~f~~~~---s~IT~ie--qsPaLDVVaiG~~~-G~ViifNlK~dkil~sFk~d~g  245 (910)
T KOG1539|consen  173 NKIVVGS-SQGRLQLWNVRTGKVVYTFQEFF---SRITAIE--QSPALDVVAIGLEN-GTVIIFNLKFDKILMSFKQDWG  245 (910)
T ss_pred             eeEEEee-cCCcEEEEEeccCcEEEEecccc---cceeEec--cCCcceEEEEeccC-ceEEEEEcccCcEEEEEEcccc
Confidence            3467788 89999999999999999998765   7788888  88988999999998 99999999999998888775 9


Q ss_pred             CeeEEEECCCCCE-EEEecCCCcEEEEEccCcceeeeec-cccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhc
Q 014475           82 PIKPIAANSHGTY-IAGGGQSGDIYMWEVASGRLLKKWH-AHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECE  159 (424)
Q Consensus        82 ~v~~~~~s~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~  159 (424)
                      +|+.++|..||+. +|+|+..|.+.+||++..+.+..++ .|.+.|....|.|....+++++.|..+++|=.+++.    
T Consensus       246 ~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~d----  321 (910)
T KOG1539|consen  246 RVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGD----  321 (910)
T ss_pred             ceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCC----
Confidence            9999999999875 5566667999999999988877765 788999999999999999999999999998665432    


Q ss_pred             ccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCC-------------------------------
Q 014475          160 SQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLK-------------------------------  208 (424)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~-------------------------------  208 (424)
                         .....++.-.+|..+..++.|.... +..+.+++.|++++.+++..                               
T Consensus       322 ---g~pR~LR~R~GHs~Pp~~irfy~~~-g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~  397 (910)
T KOG1539|consen  322 ---GVPRLLRSRGGHSAPPSCIRFYGSQ-GHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPP  397 (910)
T ss_pred             ---CcchheeeccCCCCCchheeeeccC-cEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCc
Confidence               3345566678899999999987432 17788888888777776521                               


Q ss_pred             ----------------------------------Cce-eeeeec------CcceeEEEECCCCCEEEEEeCCCcEEEEEc
Q 014475          209 ----------------------------------GRL-LRNIVF------PSVIDAIALDPAEHVFYAGSRDGSIYIAAL  247 (424)
Q Consensus       209 ----------------------------------~~~-~~~~~~------~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~  247 (424)
                                                        ... ...+.+      ...+++++.++.|++.+.|+..|.|-+|++
T Consensus       398 i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNm  477 (910)
T KOG1539|consen  398 IVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNM  477 (910)
T ss_pred             ceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEc
Confidence                                              100 000011      136788999999999999999999999999


Q ss_pred             CCCCCCCCCcCceeeeee---cccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCCCcEEEE------------------
Q 014475          248 NAESPSTSSYGMHIIGSL---SDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRM------------------  305 (424)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~---~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~~~~------------------  305 (424)
                      +.+.         ....+   ..|..+|+.++... ++.+++++.+|.+++||.....++..                  
T Consensus       478 QSGi---------~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l  548 (910)
T KOG1539|consen  478 QSGI---------HRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDL  548 (910)
T ss_pred             ccCe---------eecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhh
Confidence            9974         22333   57999999999998 99999999999999999876553332                  


Q ss_pred             -----------------------EeccCCCeeEEEEEecCceeeeccCCCceeeccCCCCCC--------------CCCc
Q 014475          306 -----------------------FRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGSQL--------------PPPL  348 (424)
Q Consensus       306 -----------------------~~~~~~~v~~l~~s~~~~~l~~~~~d~~i~iw~~~~~~~--------------~~~~  348 (424)
                                             |.+|.+.|++++|||||++|++++.|++|++||+.++.+              +.|.
T Consensus       549 ~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~vd~~~~sls~SPn  628 (910)
T KOG1539|consen  549 LAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLLVDSPCTSLSFSPN  628 (910)
T ss_pred             hhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEecCCcceeeEECCC
Confidence                                   338999999999999999999999999999999998876              4667


Q ss_pred             ccccccccccccceeEeecCcccCC
Q 014475          349 DKYVTSADEDVDKKGVIRLPSLYNA  373 (424)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~~  373 (424)
                      ..+++....+.....++.+.+++..
T Consensus       629 gD~LAT~Hvd~~gIylWsNkslF~~  653 (910)
T KOG1539|consen  629 GDFLATVHVDQNGIYLWSNKSLFKS  653 (910)
T ss_pred             CCEEEEEEecCceEEEEEchhHhee
Confidence            7888888888777777777776643

>PLN00181 protein SPA1-RELATED; Provisional

Probab=100.00  E-value=1.6e-32  Score=271.44  Aligned_cols=260  Identities=20%  Similarity=0.281  Sum_probs=220.3

Q ss_pred             eeEEEEECCCCceeee------ecCCCCeeEEEECCCCCEEEEecCCCcEEEEEccCc----c----eeeeeccccCCeE
Q 014475           61 GSILYWSWSKPQVEVK------SLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASG----R----LLKKWHAHYRAVT  126 (424)
Q Consensus        61 g~i~vwd~~~~~~~~~------~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~----~----~~~~~~~~~~~i~  126 (424)
                      |.+++|+.........      ..|.+.|.+++|+|+++++|+|+.|+.|+||++.+.    .    ....+. +...+.
T Consensus       458 gl~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~  536 (793)
T PLN00181        458 GLCKYLSFSKLRVKADLKQGDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKLS  536 (793)
T ss_pred             hhhhhhcccceEEEEeeccccccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCcee
Confidence            7788888876543321      237889999999999999999999999999997542    1    122233 356799


Q ss_pred             EEEEcc-CCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEE-cCceeEEEEEeCCCcEEEE
Q 014475          127 CLVFSE-DGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGY-GGVSATIVSASEDRTCKVW  204 (424)
Q Consensus       127 ~~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~l~~~~~d~~v~iw  204 (424)
                      +++|++ ++.+|++++.||.|++||+.+           ...+..+.+|...|++++|++ ++  .+|++|+.|++|++|
T Consensus       537 ~l~~~~~~~~~las~~~Dg~v~lWd~~~-----------~~~~~~~~~H~~~V~~l~~~p~~~--~~L~Sgs~Dg~v~iW  603 (793)
T PLN00181        537 GICWNSYIKSQVASSNFEGVVQVWDVAR-----------SQLVTEMKEHEKRVWSIDYSSADP--TLLASGSDDGSVKLW  603 (793)
T ss_pred             eEEeccCCCCEEEEEeCCCeEEEEECCC-----------CeEEEEecCCCCCEEEEEEcCCCC--CEEEEEcCCCEEEEE
Confidence            999987 578999999999999999954           345677889999999999997 45  799999999999999


Q ss_pred             ecCCCceeeeeecCcceeEEEEC-CCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecCCCEE
Q 014475          205 SLLKGRLLRNIVFPSVIDAIALD-PAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTGDLL  283 (424)
Q Consensus       205 d~~~~~~~~~~~~~~~i~~~~~~-~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l  283 (424)
                      |++++..+..+.....+.++.|+ +++.++++|+.||.|++||++...        ..+..+.+|...|.++.|.++.+|
T Consensus       604 d~~~~~~~~~~~~~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~--------~~~~~~~~h~~~V~~v~f~~~~~l  675 (793)
T PLN00181        604 SINQGVSIGTIKTKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPK--------LPLCTMIGHSKTVSYVRFVDSSTL  675 (793)
T ss_pred             ECCCCcEEEEEecCCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCC--------ccceEecCCCCCEEEEEEeCCCEE
Confidence            99999988888877789999995 579999999999999999998753        345567789999999999888899


Q ss_pred             EEeCCCCcEEEEeCCC------CcEEEEEeccCCCeeEEEEEecCceeeeccCCCceeeccCCCC
Q 014475          284 ISGSEDGMVRVWDPIT------HNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGS  342 (424)
Q Consensus       284 ~t~~~dg~i~iwd~~~------~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~d~~i~iw~~~~~  342 (424)
                      ++++.|++|++||++.      ..++..+.+|...+..++|+|++.+|++|+.|+.|++|+....
T Consensus       676 vs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~  740 (793)
T PLN00181        676 VSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFP  740 (793)
T ss_pred             EEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCC
Confidence            9999999999999974      3678899999999999999999999999999999999997644

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1e-33  Score=256.64  Aligned_cols=250  Identities=18%  Similarity=0.210  Sum_probs=205.5

Q ss_pred             cCCCCeeEEEECCCCCEEEEecCCCcEEEEEccC--------------------------------c-------------
Q 014475           78 LPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVAS--------------------------------G-------------  112 (424)
Q Consensus        78 ~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~--------------------------------~-------------  112 (424)
                      .|.+.|.++.||+||+|||+||.||.|+||.+..                                .             
T Consensus       265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~  344 (712)
T KOG0283|consen  265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQ  344 (712)
T ss_pred             ccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccC
Confidence            5889999999999999999999999999998865                                0             


Q ss_pred             ---------------ceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCc
Q 014475          113 ---------------RLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLR  177 (424)
Q Consensus       113 ---------------~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (424)
                                     +++..+.+|.+.|..+.|+. .++|++++.|.+|++|++.           ...++..| .|..-
T Consensus       345 s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSK-n~fLLSSSMDKTVRLWh~~-----------~~~CL~~F-~Hndf  411 (712)
T KOG0283|consen  345 SPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSK-NNFLLSSSMDKTVRLWHPG-----------RKECLKVF-SHNDF  411 (712)
T ss_pred             CccccCCCccccccccchhhhhccchhheeccccc-CCeeEeccccccEEeecCC-----------CcceeeEE-ecCCe
Confidence                           12233568999999999996 4589999999999999994           34556655 49999


Q ss_pred             eeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeeecCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCc
Q 014475          178 ITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSY  257 (424)
Q Consensus       178 i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  257 (424)
                      |+|++|+|..+ ++|++|+-||.|+||++...+...-.....-|+++++.|+|+..++|+.+|.+++|+...........
T Consensus       412 VTcVaFnPvDD-ryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~  490 (712)
T KOG0283|consen  412 VTCVAFNPVDD-RYFISGSLDGKVRLWSISDKKVVDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFH  490 (712)
T ss_pred             eEEEEecccCC-CcEeecccccceEEeecCcCeeEeehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeee
Confidence            99999999876 89999999999999999988887777788999999999999999999999999999998864321110


Q ss_pred             CceeeeeecccCcCeEEEEecC--CCEEEEeCCCCcEEEEeCCCCcEEEEEeccCC--CeeEEEEEecCceeeeccCCCc
Q 014475          258 GMHIIGSLSDHSKAVTCLAYST--GDLLISGSEDGMVRVWDPITHNIVRMFRLAKG--PVNNILVVRRPLYLNLGSFSNP  333 (424)
Q Consensus       258 ~~~~~~~~~~~~~~i~~~~~~~--~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~--~v~~l~~s~~~~~l~~~~~d~~  333 (424)
                      ....-..-..|. .|+.+.|.|  ...+++.+.|..|||+|.++..++..|+++..  .-....|+.||++|+++++|..
T Consensus       491 I~~~~~Kk~~~~-rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~  569 (712)
T KOG0283|consen  491 IRLHNKKKKQGK-RITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSW  569 (712)
T ss_pred             EeeccCccccCc-eeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCce
Confidence            000000011133 899999999  44577778899999999999999999997653  4467789999999999999999


Q ss_pred             eeeccCCCC
Q 014475          334 HTSSRRHGS  342 (424)
Q Consensus       334 i~iw~~~~~  342 (424)
                      |++|+....
T Consensus       570 VYiW~~~~~  578 (712)
T KOG0283|consen  570 VYIWKNDSF  578 (712)
T ss_pred             EEEEeCCCC
Confidence            999998543

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=8.7e-33  Score=244.23  Aligned_cols=270  Identities=19%  Similarity=0.257  Sum_probs=230.3

Q ss_pred             eecCCCccccCCCCceeEEEEECCCCceeee-ecCCCCeeEEEECCCCCEEEEecCCCcEEEEEccCcceeeeecc-ccC
Q 014475           46 FLASSQLREQPSASSGSILYWSWSKPQVEVK-SLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHA-HYR  123 (424)
Q Consensus        46 ~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~-~~~  123 (424)
                      |+ ..+.++++..  ..|++|+..++..... ..+.+.|+++.|+++|.+|++|..+|.|.|||..+.+.+..+.+ |..
T Consensus       185 Ws-s~n~laValg--~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~  261 (484)
T KOG0305|consen  185 WS-SANVLAVALG--QSVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHAS  261 (484)
T ss_pred             cc-cCCeEEEEec--ceEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcCc
Confidence            66 3445666654  5899999998885544 33489999999999999999999999999999999999999988 999


Q ss_pred             CeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEE
Q 014475          124 AVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKV  203 (424)
Q Consensus       124 ~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~i  203 (424)
                      .|-+++|.  +..+.+|+.|+.|..+|++....          ....+.+|...|..+.|++++  .++++|+.|+.+.|
T Consensus       262 rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~----------~~~~~~~H~qeVCgLkws~d~--~~lASGgnDN~~~I  327 (484)
T KOG0305|consen  262 RVGSLAWN--SSVLSSGSRDGKILNHDVRISQH----------VVSTLQGHRQEVCGLKWSPDG--NQLASGGNDNVVFI  327 (484)
T ss_pred             eeEEEecc--CceEEEecCCCcEEEEEEecchh----------hhhhhhcccceeeeeEECCCC--CeeccCCCccceEe
Confidence            99999998  66899999999999999976321          122478899999999999999  99999999999999


Q ss_pred             EecCCCceeeeee-cCcceeEEEECC-CCCEEEEE--eCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC
Q 014475          204 WSLLKGRLLRNIV-FPSVIDAIALDP-AEHVFYAG--SRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST  279 (424)
Q Consensus       204 wd~~~~~~~~~~~-~~~~i~~~~~~~-~~~~l~~~--~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  279 (424)
                      ||....+++..+. |...|.+++|+| ...+||+|  +.|+.|++||..++.         .+... .-...|+.+.|++
T Consensus       328 wd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~---------~i~~v-dtgsQVcsL~Wsk  397 (484)
T KOG0305|consen  328 WDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGA---------RIDSV-DTGSQVCSLIWSK  397 (484)
T ss_pred             ccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCc---------Eeccc-ccCCceeeEEEcC
Confidence            9997777777666 999999999999 66788885  479999999999874         33333 3457899999999


Q ss_pred             -CCEEEE-eC-CCCcEEEEeCCCCcEEEEEeccCCCeeEEEEEecCceeeeccCCCceeeccCCCC
Q 014475          280 -GDLLIS-GS-EDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGS  342 (424)
Q Consensus       280 -~~~l~t-~~-~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~d~~i~iw~~~~~  342 (424)
                       .+-|++ -+ .++.|.||+..+.+++..+.+|...|..++++|||..+++|+.|.++++|++-+.
T Consensus       398 ~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~~  463 (484)
T KOG0305|consen  398 KYKELLSTHGYSENQITLWKYPSMKLVAELLGHTSRVLYLALSPDGETIVTGAADETLRFWNLFDE  463 (484)
T ss_pred             CCCEEEEecCCCCCcEEEEeccccceeeeecCCcceeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence             544444 33 5778999999999999999999999999999999999999999999999998865

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=4.9e-34  Score=234.24  Aligned_cols=286  Identities=16%  Similarity=0.218  Sum_probs=240.9

Q ss_pred             CCCCCCceEEecceeecCC-CccccCCCCceeEEEEECCCCceeee-ecCCCCeeEEEECCCCCEEEEecCCCcEEEEEc
Q 014475           32 CASPPHGLACVGQRFLASS-QLREQPSASSGSILYWSWSKPQVEVK-SLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEV  109 (424)
Q Consensus        32 ~~~~~~~v~~~~~~~~~~~-~~l~~~~~~~g~i~vwd~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~  109 (424)
                      ..+|.++|.|++  =+|.. ..+++|+.| |.|++||+...+.... ..|.+.|..|++..  ..+++++.|.+|+.|.+
T Consensus        62 L~gHrdGV~~la--khp~~ls~~aSGs~D-G~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~  136 (433)
T KOG0268|consen   62 LDGHRDGVSCLA--KHPNKLSTVASGSCD-GEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKI  136 (433)
T ss_pred             ccccccccchhh--cCcchhhhhhccccC-ceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcceeeeec
Confidence            357889999999  88877 678888887 9999999998776544 56889999999986  66888899999999997


Q ss_pred             cCcceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCce
Q 014475          110 ASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVS  189 (424)
Q Consensus       110 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  189 (424)
                      +- ..+.++.+ ...+..+.-+..+..++|++.  .|.|||.+           ...++..+......|.++.|+|... 
T Consensus       137 ~~-~p~~tilg-~s~~~gIdh~~~~~~FaTcGe--~i~IWD~~-----------R~~Pv~smswG~Dti~svkfNpvET-  200 (433)
T KOG0268|consen  137 DG-PPLHTILG-KSVYLGIDHHRKNSVFATCGE--QIDIWDEQ-----------RDNPVSSMSWGADSISSVKFNPVET-  200 (433)
T ss_pred             cC-Ccceeeec-cccccccccccccccccccCc--eeeecccc-----------cCCccceeecCCCceeEEecCCCcc-
Confidence            54 45555543 355677777767778999987  49999994           3556777788888999999999875 


Q ss_pred             eEEEEEeCCCcEEEEecCCCceeeeeecCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccC
Q 014475          190 ATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHS  269 (424)
Q Consensus       190 ~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~  269 (424)
                      ..|+++..|+.|.+||++++.+++.+......+.++|+|.+-.|.+++.|..++.||++.-.        .++....+|.
T Consensus       201 sILas~~sDrsIvLyD~R~~~Pl~KVi~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~--------~p~~v~~dhv  272 (433)
T KOG0268|consen  201 SILASCASDRSIVLYDLRQASPLKKVILTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLS--------RPLNVHKDHV  272 (433)
T ss_pred             hheeeeccCCceEEEecccCCccceeeeeccccceecCccccceeeccccccceehhhhhhc--------ccchhhcccc
Confidence            78888889999999999999999999999999999999988889999999999999999976        7788899999


Q ss_pred             cCeEEEEecC-CCEEEEeCCCCcEEEEeCCCCcEEEEEe-ccCCCeeEEEEEecCceeeeccCCCceeeccCCCCCCCC
Q 014475          270 KAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFR-LAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGSQLPP  346 (424)
Q Consensus       270 ~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~l~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~  346 (424)
                      ..|.++.|+| |.-+++||.|.+|+||.++.+.--.... .....|.++.||.|.+|+++||+|+.|++|.....+...
T Consensus       273 sAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~Aseklg  351 (433)
T KOG0268|consen  273 SAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKASEKLG  351 (433)
T ss_pred             eeEEEeccCCCcchhccccccceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCcceeeeecchhhhcC
Confidence            9999999999 9999999999999999998765433321 122479999999999999999999999999988554433

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=100.00  E-value=2.2e-32  Score=225.89  Aligned_cols=268  Identities=21%  Similarity=0.323  Sum_probs=221.3

Q ss_pred             EEEeecCCCCCceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCcee-----eee
Q 014475            3 LLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVE-----VKS   77 (424)
Q Consensus         3 ~~lat~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~-----~~~   77 (424)
                      -.+.||+ .||.+++||.. |+..+.+.+|.++...+..+.  -.+....+++++.| .++++|.++.++..     ...
T Consensus       116 ~~Iltgs-YDg~~riWd~~-Gk~~~~~~Ght~~ik~v~~v~--~n~~~~~fvsas~D-qtl~Lw~~~~~~~~~~~~~~~~  190 (423)
T KOG0313|consen  116 KWILTGS-YDGTSRIWDLK-GKSIKTIVGHTGPIKSVAWVI--KNSSSCLFVSASMD-QTLRLWKWNVGENKVKALKVCR  190 (423)
T ss_pred             ceEEEee-cCCeeEEEecC-CceEEEEecCCcceeeeEEEe--cCCccceEEEecCC-ceEEEEEecCchhhhhHHhHhc
Confidence            3578999 99999999965 999999999887766666544  34444568899998 99999999877643     224


Q ss_pred             cCCCCeeEEEECCCCCEEEEecCCCcEEEEEccC-------------------------cceeeeeccccCCeEEEEEcc
Q 014475           78 LPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVAS-------------------------GRLLKKWHAHYRAVTCLVFSE  132 (424)
Q Consensus        78 ~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~-------------------------~~~~~~~~~~~~~i~~~~~~~  132 (424)
                      +|...|.+++..++|..+++|+.|.+|.||+.++                         +.++..+.+|..+|.++.|++
T Consensus       191 GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d  270 (423)
T KOG0313|consen  191 GHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD  270 (423)
T ss_pred             ccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC
Confidence            7999999999999999999999999999999321                         134556789999999999997


Q ss_pred             CCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCce-
Q 014475          133 DGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRL-  211 (424)
Q Consensus       133 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~-  211 (424)
                       ...+.+++.|.+|+.||++++..           ...+. ....++++..++..  .+|++|+.|..+++||.+++.- 
T Consensus       271 -~~v~yS~SwDHTIk~WDletg~~-----------~~~~~-~~ksl~~i~~~~~~--~Ll~~gssdr~irl~DPR~~~gs  335 (423)
T KOG0313|consen  271 -ATVIYSVSWDHTIKVWDLETGGL-----------KSTLT-TNKSLNCISYSPLS--KLLASGSSDRHIRLWDPRTGDGS  335 (423)
T ss_pred             -CCceEeecccceEEEEEeecccc-----------eeeee-cCcceeEeeccccc--ceeeecCCCCceeecCCCCCCCc
Confidence             66899999999999999977432           22222 34578899999977  8999999999999999997642 


Q ss_pred             --eeee-ecCcceeEEEECCC-CCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecCCCEEEEeC
Q 014475          212 --LRNI-VFPSVIDAIALDPA-EHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTGDLLISGS  287 (424)
Q Consensus       212 --~~~~-~~~~~i~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~t~~  287 (424)
                        ...+ .|..-|.++.|+|. ...|++|+.|+++++||++...        .++..+.+|...|.++.|+.+..+++|+
T Consensus       336 ~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k--------~plydI~~h~DKvl~vdW~~~~~IvSGG  407 (423)
T KOG0313|consen  336 VVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTK--------APLYDIAGHNDKVLSVDWNEGGLIVSGG  407 (423)
T ss_pred             eeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCC--------CcceeeccCCceEEEEeccCCceEEecc
Confidence              2223 38899999999995 5668889999999999999974        5788999999999999999899999999


Q ss_pred             CCCcEEEEeCC
Q 014475          288 EDGMVRVWDPI  298 (424)
Q Consensus       288 ~dg~i~iwd~~  298 (424)
                      .|.+|+|+.-.
T Consensus       408 aD~~l~i~~~~  418 (423)
T KOG0313|consen  408 ADNKLRIFKGS  418 (423)
T ss_pred             CcceEEEeccc
Confidence            99999998743

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=8.9e-34  Score=229.71  Aligned_cols=268  Identities=22%  Similarity=0.362  Sum_probs=235.3

Q ss_pred             EEEeecCCCCCceEEEeCCCCceEEEeeCC-----CCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCceeee-
Q 014475            3 LLIASSSVADTGIGCWDLESGAEQLRYKSC-----ASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVK-   76 (424)
Q Consensus         3 ~~lat~~~~dg~i~vwd~~~~~~~~~~~~~-----~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~-   76 (424)
                      .+|++|+ .||-|.|||..+|+..+.++-.     -.+..+|.|+.  |+.|...+|+++.| |.|++|.+.++.+..+ 
T Consensus       226 qyLvsgS-vDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~--FSRDsEMlAsGsqD-GkIKvWri~tG~ClRrF  301 (508)
T KOG0275|consen  226 QYLVSGS-VDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCIS--FSRDSEMLASGSQD-GKIKVWRIETGQCLRRF  301 (508)
T ss_pred             ceEeecc-ccceeeeehhccchhhhhhhhhhhcceeecccceEEEe--ecccHHHhhccCcC-CcEEEEEEecchHHHHh
Confidence            5899999 9999999999999988766432     23567899999  99999999999998 9999999999988755 


Q ss_pred             -ecCCCCeeEEEECCCCCEEEEecCCCcEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCccc
Q 014475           77 -SLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVF  155 (424)
Q Consensus        77 -~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~  155 (424)
                       ..|...|+|+.||.|+..+++++.|.++++.-+.+|++++.+++|.+.|+...|.++|.++++++.||+|++|+..+..
T Consensus       302 drAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~Ktte  381 (508)
T KOG0275|consen  302 DRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTE  381 (508)
T ss_pred             hhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEecCCccEEEecCcchh
Confidence             3589999999999999999999999999999999999999999999999999999999999999999999999997633


Q ss_pred             chhcccccccceEEeec--CCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeee----cCcceeEEEECCC
Q 014475          156 EECESQRASHLYLHSFT--GHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV----FPSVIDAIALDPA  229 (424)
Q Consensus       156 ~~~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~----~~~~i~~~~~~~~  229 (424)
                                 ++.+++  +...+|+++..-|.+. ..++++...+++.+-++ .|+.++.+.    ..+..-+.+.+|.
T Consensus       382 -----------C~~Tfk~~~~d~~vnsv~~~PKnp-eh~iVCNrsntv~imn~-qGQvVrsfsSGkREgGdFi~~~lSpk  448 (508)
T KOG0275|consen  382 -----------CLSTFKPLGTDYPVNSVILLPKNP-EHFIVCNRSNTVYIMNM-QGQVVRSFSSGKREGGDFINAILSPK  448 (508)
T ss_pred             -----------hhhhccCCCCcccceeEEEcCCCC-ceEEEEcCCCeEEEEec-cceEEeeeccCCccCCceEEEEecCC
Confidence                       223332  3566788888888765 78899999999999998 477788876    3456778889999


Q ss_pred             CCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEe
Q 014475          230 EHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWD  296 (424)
Q Consensus       230 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd  296 (424)
                      |.++++.+.|+.++.|...++         ..-..+..|+..+..++-+| .+.+++-++||.+++|.
T Consensus       449 GewiYcigED~vlYCF~~~sG---------~LE~tl~VhEkdvIGl~HHPHqNllAsYsEDgllKLWk  507 (508)
T KOG0275|consen  449 GEWIYCIGEDGVLYCFSVLSG---------KLERTLPVHEKDVIGLTHHPHQNLLASYSEDGLLKLWK  507 (508)
T ss_pred             CcEEEEEccCcEEEEEEeecC---------ceeeeeecccccccccccCcccchhhhhcccchhhhcC
Confidence            999999999999999999987         55667888999999999999 99999999999999995

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=100.00  E-value=1.7e-33  Score=234.75  Aligned_cols=276  Identities=19%  Similarity=0.281  Sum_probs=233.7

Q ss_pred             CCCceEEecceeecCCCccccCCCCceeEEEEECCCCceeee---ecCCCCeeEEEECCCCCEEEEecCCCcEEEEEccC
Q 014475           35 PPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVK---SLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVAS  111 (424)
Q Consensus        35 ~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~---~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~  111 (424)
                      |...+..+.  |.++...|+++|.| ..|++|+....+....   .+..++|+.+.|.++++++++++.|+.+++|++.+
T Consensus       174 h~gev~~v~--~l~~sdtlatgg~D-r~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~  250 (459)
T KOG0288|consen  174 HEGEVHDVE--FLRNSDTLATGGSD-RIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDS  250 (459)
T ss_pred             cccccceeE--EccCcchhhhcchh-hhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccc
Confidence            445556666  99999999999998 9999999987764332   34567899999999999999999999999999999


Q ss_pred             cceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeE
Q 014475          112 GRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSAT  191 (424)
Q Consensus       112 ~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~  191 (424)
                      .+...++.+|.+.|+++.|......+++|+.|.+|++||+..           ..+.++.. ....+.+|+.+  .  ..
T Consensus       251 ~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k-----------~~C~kt~l-~~S~cnDI~~~--~--~~  314 (459)
T KOG0288|consen  251 LRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQK-----------AYCSKTVL-PGSQCNDIVCS--I--SD  314 (459)
T ss_pred             hhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhh-----------hheecccc-ccccccceEec--c--ee
Confidence            999999999999999999987666699999999999999954           22333222 23345556655  2  57


Q ss_pred             EEEEeCCCcEEEEecCCCceeeeeecCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecc----
Q 014475          192 IVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSD----  267 (424)
Q Consensus       192 l~~~~~d~~v~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~----  267 (424)
                      +++|..|++|++||+++..+.......+.|+++..++++..+++.+.|..+.+.|+++..         ....+.+    
T Consensus       315 ~~SgH~DkkvRfwD~Rs~~~~~sv~~gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt~e---------I~~~~sA~g~k  385 (459)
T KOG0288|consen  315 VISGHFDKKVRFWDIRSADKTRSVPLGGRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKE---------IRQTFSAEGFK  385 (459)
T ss_pred             eeecccccceEEEeccCCceeeEeecCcceeeEeeccCCeEEeeecCCCceeeeeccccc---------EEEEeeccccc
Confidence            899999999999999999999999988899999999999999999999999999999964         2233322    


Q ss_pred             cCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCCCcEEEEEeccCCC--eeEEEEEecCceeeeccCCCceeecc
Q 014475          268 HSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGP--VNNILVVRRPLYLNLGSFSNPHTSSR  338 (424)
Q Consensus       268 ~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~--v~~l~~s~~~~~l~~~~~d~~i~iw~  338 (424)
                      .....+.+.|+| +.|+++|+.||.|+||++.++++...+.....+  |++++|+|.|..|++++.++.+.+|.
T Consensus       386 ~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW~  459 (459)
T KOG0288|consen  386 CASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLWT  459 (459)
T ss_pred             cccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEecC
Confidence            123488899999 999999999999999999999999988866554  99999999999999999999999994

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=100.00  E-value=9.8e-33  Score=245.16  Aligned_cols=313  Identities=16%  Similarity=0.180  Sum_probs=248.9

Q ss_pred             CCCceEEEeCCCCceEEEeeCCCCCCCceEEecceeec------C-----CCccccCCCCceeEEEEECCCCc---eee-
Q 014475           11 ADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLA------S-----SQLREQPSASSGSILYWSWSKPQ---VEV-   75 (424)
Q Consensus        11 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~------~-----~~~l~~~~~~~g~i~vwd~~~~~---~~~-   75 (424)
                      .|..+.|||++.-..+......-.|...|..+.  -.|      .     ...+++++.| ++|++|+++...   ... 
T Consensus       344 ndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve--~~p~nv~~~~~aclp~~cF~TCSsD-~TIRlW~l~~ctnn~vyrR  420 (1080)
T KOG1408|consen  344 NDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVE--NLPCNVHSPTAACLPRGCFTTCSSD-GTIRLWDLAFCTNNQVYRR  420 (1080)
T ss_pred             cCceEEEEeccccccccceeeeeeccceeeeec--cccccccCcccccCCccceeEecCC-CcEEEeecccccccceeec
Confidence            689999999987554433322233445555444  222      1     1236677776 999999997521   100 


Q ss_pred             --------e--------------------------ecCCCCeeEEEECCCCCEEEEecCCCcEEEEEccCcceeeeeccc
Q 014475           76 --------K--------------------------SLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAH  121 (424)
Q Consensus        76 --------~--------------------------~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~  121 (424)
                              +                          ......+.+++.+|+|++||+|..-|.++||++.+.+....+..|
T Consensus       421 Nils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAH  500 (1080)
T KOG1408|consen  421 NILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAH  500 (1080)
T ss_pred             ccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEEEehhhhhhhheecc
Confidence                    0                          001346899999999999999999999999999999999999999


Q ss_pred             cCCeEEEEEcc---CCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCC
Q 014475          122 YRAVTCLVFSE---DGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASED  198 (424)
Q Consensus       122 ~~~i~~~~~~~---~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d  198 (424)
                      ..+|.|+.|+.   ..++|++++.|..|.+||+..          ...++.++.+|...|+++.|...+-+..+++++.|
T Consensus       501 esEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~r----------ny~l~qtld~HSssITsvKFa~~gln~~MiscGAD  570 (1080)
T KOG1408|consen  501 ESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKR----------NYDLVQTLDGHSSSITSVKFACNGLNRKMISCGAD  570 (1080)
T ss_pred             cceeEEEeecCchhhhHhhhhccCCceEEEEeccc----------ccchhhhhcccccceeEEEEeecCCceEEEeccCc
Confidence            99999999985   457899999999999999954          45567889999999999999988877889999999


Q ss_pred             CcEEEEecCCCceeeeee------cCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCe
Q 014475          199 RTCKVWSLLKGRLLRNIV------FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAV  272 (424)
Q Consensus       199 ~~v~iwd~~~~~~~~~~~------~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i  272 (424)
                      +.|.+--.+.......+.      ....+..++..|..+++++++.|..|+||++..++..      +..+.-.+|++..
T Consensus       571 ksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~------k~FKgs~~~eG~l  644 (1080)
T KOG1408|consen  571 KSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQV------KSFKGSRDHEGDL  644 (1080)
T ss_pred             hhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEecccccee------eeecccccCCCce
Confidence            887654333211111121      3467899999999999999999999999999998532      2222334577888


Q ss_pred             EEEEecC-CCEEEEeCCCCcEEEEeCCCCcEEEEEeccCCCeeEEEEEecCceeeeccCCCceeeccCCCC
Q 014475          273 TCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGS  342 (424)
Q Consensus       273 ~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~d~~i~iw~~~~~  342 (424)
                      ..+...| +.|+++...|.++.++|..+|+++.++.+|...|+.+.|.+|-+.|++.+.||.|.+|.+...
T Consensus       645 IKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~lp~~  715 (1080)
T KOG1408|consen  645 IKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDCKHLISVSGDGCIFVWKLPLT  715 (1080)
T ss_pred             EEEEECCCccEEEEeecCCceEEEEeccchhhhhhcCcchheeeeeecccchhheeecCCceEEEEECchh
Confidence            8999999 999999999999999999999999999999999999999999999999999999999998753

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=100.00  E-value=7.5e-32  Score=212.07  Aligned_cols=271  Identities=15%  Similarity=0.218  Sum_probs=231.9

Q ss_pred             CCCCceEEecceeecCCCccccCCCCceeEEEEECCCCceee---eecCCCCeeEEEECC-CCCEEEEecCCCcEEEEEc
Q 014475           34 SPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEV---KSLPAEPIKPIAANS-HGTYIAGGGQSGDIYMWEV  109 (424)
Q Consensus        34 ~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~---~~~~~~~v~~~~~s~-~~~~l~~~~~dg~v~iwd~  109 (424)
                      +|...+.+++  |..+|..|++++.+ +++.+|+++......   ...|.+.|-.++|+| +...+++++.|.+|++||.
T Consensus        18 ~~~~~v~Sv~--wn~~g~~lasgs~d-ktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~   94 (313)
T KOG1407|consen   18 GHVQKVHSVA--WNCDGTKLASGSFD-KTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDI   94 (313)
T ss_pred             hhhhcceEEE--EcccCceeeecccC-CceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEe
Confidence            4556677888  99999999999998 999999998775432   345788999999988 6788999999999999999


Q ss_pred             cCcceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCce
Q 014475          110 ASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVS  189 (424)
Q Consensus       110 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  189 (424)
                      +++++........+. .-+.|+|+|++++.+..|..|...|.++..           ... -......+..++|+.++  
T Consensus        95 r~~k~~~~i~~~~en-i~i~wsp~g~~~~~~~kdD~it~id~r~~~-----------~~~-~~~~~~e~ne~~w~~~n--  159 (313)
T KOG1407|consen   95 RSGKCTARIETKGEN-INITWSPDGEYIAVGNKDDRITFIDARTYK-----------IVN-EEQFKFEVNEISWNNSN--  159 (313)
T ss_pred             ccCcEEEEeeccCcc-eEEEEcCCCCEEEEecCcccEEEEEecccc-----------eee-hhcccceeeeeeecCCC--
Confidence            999999888754444 457899999999999999999999996621           121 12234566778888665  


Q ss_pred             eEEEEEeCCCcEEEEecCCCceeeeee-cCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeeccc
Q 014475          190 ATIVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDH  268 (424)
Q Consensus       190 ~~l~~~~~d~~v~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~  268 (424)
                      ++++....-|+|.|.....-+++..++ |+....|+.|+|+|++|++|+.|..+.+||++.-         -+...+..+
T Consensus       160 d~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~EL---------iC~R~isRl  230 (313)
T KOG1407|consen  160 DLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDEL---------ICERCISRL  230 (313)
T ss_pred             CEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHh---------hhheeeccc
Confidence            666666667999999999999999998 9999999999999999999999999999999885         567788889


Q ss_pred             CcCeEEEEecC-CCEEEEeCCCCcEEEEeCCCCcEEEEEeccCCCeeEEEEEecCceeeeccCCC
Q 014475          269 SKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSN  332 (424)
Q Consensus       269 ~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~d~  332 (424)
                      .-+|..+.|+. |++||+|++|..|-|=++++|..+..++ +.++...++|+|...+||-+..|.
T Consensus       231 dwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~-~~~~t~tVAWHPk~~LLAyA~ddk  294 (313)
T KOG1407|consen  231 DWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIP-CEGPTFTVAWHPKRPLLAYACDDK  294 (313)
T ss_pred             cCceEEEEeccCcceeeccCccceEEeEecccCCeEEEee-ccCCceeEEecCCCceeeEEecCC
Confidence            99999999999 9999999999999999999999999998 789999999999999998877654

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=100.00  E-value=1.3e-32  Score=255.71  Aligned_cols=283  Identities=19%  Similarity=0.274  Sum_probs=239.4

Q ss_pred             CceEEecceeecCCCccccCC--CCceeEEEEECCCC-------------ceeeeecCCCCeeEEEECCCCCEEEEecCC
Q 014475           37 HGLACVGQRFLASSQLREQPS--ASSGSILYWSWSKP-------------QVEVKSLPAEPIKPIAANSHGTYIAGGGQS  101 (424)
Q Consensus        37 ~~v~~~~~~~~~~~~~l~~~~--~~~g~i~vwd~~~~-------------~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d  101 (424)
                      ..|.+++  .+|+|..++++|  .| |.+++|+.+.-             .......|.+.|+|+.|+|||++||+|++|
T Consensus        14 ~~IfSId--v~pdg~~~aTgGq~~d-~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD   90 (942)
T KOG0973|consen   14 KSIFSID--VHPDGVKFATGGQVLD-GGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDD   90 (942)
T ss_pred             eeEEEEE--ecCCceeEecCCcccc-ccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCc
Confidence            4478888  999999999999  77 88889987521             112334588999999999999999999999


Q ss_pred             CcEEEEEccC------------------cceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhccccc
Q 014475          102 GDIYMWEVAS------------------GRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRA  163 (424)
Q Consensus       102 g~v~iwd~~~------------------~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~  163 (424)
                      +.|.||+...                  .+....+.+|...|..++|+|++.+|++++.|++|.+||..+          
T Consensus        91 ~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~t----------  160 (942)
T KOG0973|consen   91 RLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKT----------  160 (942)
T ss_pred             ceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEcccc----------
Confidence            9999999872                  135667889999999999999999999999999999999965          


Q ss_pred             ccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeee-------cCcceeEEEECCCCCEEEEE
Q 014475          164 SHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-------FPSVIDAIALDPAEHVFYAG  236 (424)
Q Consensus       164 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~-------~~~~i~~~~~~~~~~~l~~~  236 (424)
                       ...+..+.+|.+.|..+.|.|-|  ++|++-+.|++|++|++.+....+.+.       .......+.|+|||.+|++.
T Consensus       161 -F~~~~vl~~H~s~VKGvs~DP~G--ky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~  237 (942)
T KOG0973|consen  161 -FELLKVLRGHQSLVKGVSWDPIG--KYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASP  237 (942)
T ss_pred             -ceeeeeeecccccccceEECCcc--CeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecch
Confidence             46788899999999999999999  999999999999999987766666665       23457889999999999986


Q ss_pred             eC----CCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC------CC------------EEEEeCCCCcEEE
Q 014475          237 SR----DGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST------GD------------LLISGSEDGMVRV  294 (424)
Q Consensus       237 ~~----dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~------~~------------~l~t~~~dg~i~i  294 (424)
                      ..    -..+.|.+-.+         ++.-..+.+|.+++.++.|+|      ..            .+|+|+.|++|.|
T Consensus       238 nA~n~~~~~~~IieR~t---------Wk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSV  308 (942)
T KOG0973|consen  238 NAVNGGKSTIAIIERGT---------WKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSV  308 (942)
T ss_pred             hhccCCcceeEEEecCC---------ceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEE
Confidence            42    23677777755         466778899999999999987      12            6889999999999


Q ss_pred             EeCCCCcEEEEEe-ccCCCeeEEEEEecCceeeeccCCCceeeccCCCCCC
Q 014475          295 WDPITHNIVRMFR-LAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGSQL  344 (424)
Q Consensus       295 wd~~~~~~~~~~~-~~~~~v~~l~~s~~~~~l~~~~~d~~i~iw~~~~~~~  344 (424)
                      |.....+++..+. ....+|..++|+|||..|.++|.||+|.+......++
T Consensus       309 W~T~~~RPl~vi~~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~El  359 (942)
T KOG0973|consen  309 WNTALPRPLFVIHNLFNKSIVDMSWSPDGFSLFACSLDGTVALIHFEEKEL  359 (942)
T ss_pred             EecCCCCchhhhhhhhcCceeeeeEcCCCCeEEEEecCCeEEEEEcchHHh
Confidence            9998888877654 3457999999999999999999999999999886554

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.1e-31  Score=216.75  Aligned_cols=239  Identities=23%  Similarity=0.365  Sum_probs=211.6

Q ss_pred             cCCCCeeEEEECCCCCEEEEecCCCcEEEEEccCcceeeeeccccCCeEEEEEccCCc--EEEEeeCCCcEEEEeCCccc
Q 014475           78 LPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGS--FLISGSEDGCVRIWSLLTVF  155 (424)
Q Consensus        78 ~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~--~l~s~~~dg~i~iwd~~~~~  155 (424)
                      .|.+++++++.+  +.++|+|+.|-+|+|||+++...+..+-.|.+.|+++.|.++-.  +|++|+.||.|.+|+.    
T Consensus        41 aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~----  114 (362)
T KOG0294|consen   41 AHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRV----  114 (362)
T ss_pred             ccccceeEEEec--ceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEc----
Confidence            478899999995  89999999999999999999999999999999999999998654  8999999999999999    


Q ss_pred             chhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeeecCcceeEEEECCCCCEEEE
Q 014475          156 EECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYA  235 (424)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~  235 (424)
                             .....+..+++|.+.|+.++++|.+  ++.++.+.|+.+++||+-+|+.-.........+.+.|+|.|.++++
T Consensus       115 -------~~W~~~~slK~H~~~Vt~lsiHPS~--KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd~F~v  185 (362)
T KOG0294|consen  115 -------GSWELLKSLKAHKGQVTDLSIHPSG--KLALSVGGDQVLRTWNLVRGRVAFVLNLKNKATLVSWSPQGDHFVV  185 (362)
T ss_pred             -------CCeEEeeeecccccccceeEecCCC--ceEEEEcCCceeeeehhhcCccceeeccCCcceeeEEcCCCCEEEE
Confidence                   5678899999999999999999999  8999999999999999999998887777777777999999999998


Q ss_pred             EeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecCCCEEEEeCCCCcEEEEeCCCCcEEEEEeccCCCeeE
Q 014475          236 GSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTGDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNN  315 (424)
Q Consensus       236 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~  315 (424)
                      +..+ .|-+|.+.+...         ...+ .....+.++.|..+..|++|++|+.|++||..+..+...+.+|...|.+
T Consensus       186 ~~~~-~i~i~q~d~A~v---------~~~i-~~~~r~l~~~~l~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~  254 (362)
T KOG0294|consen  186 SGRN-KIDIYQLDNASV---------FREI-ENPKRILCATFLDGSELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKD  254 (362)
T ss_pred             Eecc-EEEEEecccHhH---------hhhh-hccccceeeeecCCceEEEecCCceEEEeccCCCccceeeecchhheee
Confidence            8876 488999988531         2222 2235577888777899999999999999999999999999999999999


Q ss_pred             EEEE--ecCceeeeccCCCceeeccCCCC
Q 014475          316 ILVV--RRPLYLNLGSFSNPHTSSRRHGS  342 (424)
Q Consensus       316 l~~s--~~~~~l~~~~~d~~i~iw~~~~~  342 (424)
                      +.+-  |++.+|+++|.||.|++||++..
T Consensus       255 i~~~~~~~~~~lvTaSSDG~I~vWd~~~~  283 (362)
T KOG0294|consen  255 IASYTNPEHEYLVTASSDGFIKVWDIDME  283 (362)
T ss_pred             eEEEecCCceEEEEeccCceEEEEEcccc
Confidence            9854  57889999999999999999866

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=100.00  E-value=1.7e-31  Score=210.71  Aligned_cols=278  Identities=18%  Similarity=0.243  Sum_probs=233.1

Q ss_pred             EEEeecCCCCCceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCceeeeecCCCC
Q 014475            3 LLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSLPAEP   82 (424)
Q Consensus         3 ~~lat~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~~~~~~~   82 (424)
                      .+|.+++ +|.+..||-..+|+.+-++.+|.   ..|.|++  ..-+.+.+++++.| .++++||+++++.........+
T Consensus        23 DLlFsca-KD~~~~vw~s~nGerlGty~GHt---GavW~~D--id~~s~~liTGSAD-~t~kLWDv~tGk~la~~k~~~~   95 (327)
T KOG0643|consen   23 DLLFSCA-KDSTPTVWYSLNGERLGTYDGHT---GAVWCCD--IDWDSKHLITGSAD-QTAKLWDVETGKQLATWKTNSP   95 (327)
T ss_pred             cEEEEec-CCCCceEEEecCCceeeeecCCC---ceEEEEE--ecCCcceeeecccc-ceeEEEEcCCCcEEEEeecCCe
Confidence            4788999 99999999999999999998765   6799999  88899999999998 9999999999999999889999


Q ss_pred             eeEEEECCCCCEEEEecC-----CCcEEEEEcc-------CcceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEe
Q 014475           83 IKPIAANSHGTYIAGGGQ-----SGDIYMWEVA-------SGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWS  150 (424)
Q Consensus        83 v~~~~~s~~~~~l~~~~~-----dg~v~iwd~~-------~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd  150 (424)
                      |..+.|+++|++++....     .+.|.++|++       +.++...+..+.+.++.+-|.|-+++|++|..||.|..||
T Consensus        96 Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~d  175 (327)
T KOG0643|consen   96 VKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYD  175 (327)
T ss_pred             eEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEEecCCCcEEEEE
Confidence            999999999998887643     4669999998       3456777888889999999999999999999999999999


Q ss_pred             CCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeeecCcceeEEEECCCC
Q 014475          151 LLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAE  230 (424)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~i~~~~~~~~~  230 (424)
                      .+++          ...+.....|...|+++.++++.  .++++++.|.+-++||.++-+.++++....++++.+++|..
T Consensus       176 a~~g----------~~~v~s~~~h~~~Ind~q~s~d~--T~FiT~s~Dttakl~D~~tl~v~Kty~te~PvN~aaisP~~  243 (327)
T KOG0643|consen  176 ARTG----------KELVDSDEEHSSKINDLQFSRDR--TYFITGSKDTTAKLVDVRTLEVLKTYTTERPVNTAAISPLL  243 (327)
T ss_pred             cccC----------ceeeechhhhccccccccccCCc--ceEEecccCccceeeeccceeeEEEeeecccccceeccccc
Confidence            9764          23455667799999999999998  89999999999999999999999999999999999999987


Q ss_pred             CEEEEEeCCCcEEEEEcCCCCC--CCCCc---CceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCC
Q 014475          231 HVFYAGSRDGSIYIAALNAESP--STSSY---GMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPIT  299 (424)
Q Consensus       231 ~~l~~~~~dg~i~i~d~~~~~~--~~~~~---~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~  299 (424)
                      ..++.|+.....-+-.......  ....+   -.+.+...++|-++|++++|+| |...++|++||.|++.....
T Consensus       244 d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR~h~Fd~  318 (327)
T KOG0643|consen  244 DHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRLHHFDS  318 (327)
T ss_pred             ceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCceEEEEEecc
Confidence            7777765433222222222111  00000   0134567889999999999999 99999999999999986543

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=5.7e-32  Score=228.77  Aligned_cols=290  Identities=24%  Similarity=0.317  Sum_probs=232.2

Q ss_pred             eCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCcee---ee----------------ecCCCCeeEEEECC
Q 014475           30 KSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVE---VK----------------SLPAEPIKPIAANS   90 (424)
Q Consensus        30 ~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~---~~----------------~~~~~~v~~~~~s~   90 (424)
                      ..+..|...+.+++  ++|++++.++++.+ |+|.-|++.++...   ..                ..|...+.+++.|+
T Consensus       136 ~~~~~H~~s~~~va--ls~d~~~~fsask~-g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~  212 (479)
T KOG0299|consen  136 RVIGKHQLSVTSVA--LSPDDKRVFSASKD-GTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSS  212 (479)
T ss_pred             eeeccccCcceEEE--eeccccceeecCCC-cceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcC
Confidence            34445668889999  99999999999998 99999998765521   10                14667899999999


Q ss_pred             CCCEEEEecCCCcEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEe
Q 014475           91 HGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHS  170 (424)
Q Consensus        91 ~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  170 (424)
                      ||+|||+|+.|..|.||+.++.+.++.+.+|.+.|.+++|-.....+++++.|+.+++|+++.           ...+.+
T Consensus       213 Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~-----------~s~vet  281 (479)
T KOG0299|consen  213 DGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQ-----------LSYVET  281 (479)
T ss_pred             CCcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhH-----------hHHHHH
Confidence            999999999999999999999999999999999999999998888899999999999999943           456778


Q ss_pred             ecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeeecCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCC
Q 014475          171 FTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAE  250 (424)
Q Consensus       171 ~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  250 (424)
                      +.+|++.|.++......  ..+-+|+.|.++++|++.....+....+.+.+.|++|-. ...|++|+.+|.|.+|++...
T Consensus       282 lyGHqd~v~~IdaL~re--R~vtVGgrDrT~rlwKi~eesqlifrg~~~sidcv~~In-~~HfvsGSdnG~IaLWs~~KK  358 (479)
T KOG0299|consen  282 LYGHQDGVLGIDALSRE--RCVTVGGRDRTVRLWKIPEESQLIFRGGEGSIDCVAFIN-DEHFVSGSDNGSIALWSLLKK  358 (479)
T ss_pred             HhCCccceeeechhccc--ceEEeccccceeEEEeccccceeeeeCCCCCeeeEEEec-ccceeeccCCceEEEeeeccc
Confidence            89999999999887775  566666799999999996555444445778899999975 456899999999999999887


Q ss_pred             CCCCCCcCceeeeee---cccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCCC----cEEEEEeccCCCeeEEEEEecC
Q 014475          251 SPSTSSYGMHIIGSL---SDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITH----NIVRMFRLAKGPVNNILVVRRP  322 (424)
Q Consensus       251 ~~~~~~~~~~~~~~~---~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~----~~~~~~~~~~~~v~~l~~s~~~  322 (424)
                      ++.......+.+...   ..+..+|++++..| .+++++|+.+|.|++|-+..+    .++..+. -.+.|++++|+++|
T Consensus       359 kplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls-~~GfVNsl~f~~sg  437 (479)
T KOG0299|consen  359 KPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLS-LVGFVNSLAFSNSG  437 (479)
T ss_pred             CceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecc-cccEEEEEEEccCC
Confidence            654332211211111   12334899999999 999999999999999999887    4555555 56899999999999


Q ss_pred             ceeeec-cCCCceeec
Q 014475          323 LYLNLG-SFSNPHTSS  337 (424)
Q Consensus       323 ~~l~~~-~~d~~i~iw  337 (424)
                      ++|++| +....+--|
T Consensus       438 k~ivagiGkEhRlGRW  453 (479)
T KOG0299|consen  438 KRIVAGIGKEHRLGRW  453 (479)
T ss_pred             CEEEEeccccccccee
Confidence            976554 444444444

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=2.3e-30  Score=199.70  Aligned_cols=278  Identities=19%  Similarity=0.246  Sum_probs=229.3

Q ss_pred             CceEEecceeecCCCccccCCCCceeEEEEECCCC--------------cee--eeecCCCCeeEEEECCCCCEEEEecC
Q 014475           37 HGLACVGQRFLASSQLREQPSASSGSILYWSWSKP--------------QVE--VKSLPAEPIKPIAANSHGTYIAGGGQ  100 (424)
Q Consensus        37 ~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~--------------~~~--~~~~~~~~v~~~~~s~~~~~l~~~~~  100 (424)
                      ..|.+++  |+|.|.+.++++.. +++++-....-              .+.  ....|.+.|.|.+|+|+|.++++|+.
T Consensus        33 qairav~--fhp~g~lyavgsns-kt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgsn  109 (350)
T KOG0641|consen   33 QAIRAVA--FHPAGGLYAVGSNS-KTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGSN  109 (350)
T ss_pred             hheeeEE--ecCCCceEEeccCC-ceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEecCC
Confidence            5678888  99999999999987 99988754310              111  22457899999999999999999999


Q ss_pred             CCcEEEEEccCcce-----eeeeccccCCeEEEEEcc----CCcEEEEeeC-CCcEEEEeCCcccchhcccccccceEEe
Q 014475          101 SGDIYMWEVASGRL-----LKKWHAHYRAVTCLVFSE----DGSFLISGSE-DGCVRIWSLLTVFEECESQRASHLYLHS  170 (424)
Q Consensus       101 dg~v~iwd~~~~~~-----~~~~~~~~~~i~~~~~~~----~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~  170 (424)
                      |.+|++.-++...+     -..+..|.+.|..++|..    .+..|++++. |..|++-|.           ...+..+.
T Consensus       110 dk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc-----------~~g~~~~a  178 (350)
T KOG0641|consen  110 DKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDC-----------GRGQGFHA  178 (350)
T ss_pred             CceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeec-----------CCCCccee
Confidence            99999987754432     245678999999999964    3456666553 666777777           34556778


Q ss_pred             ecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeee---c-----CcceeEEEECCCCCEEEEEeCCCcE
Q 014475          171 FTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV---F-----PSVIDAIALDPAEHVFYAGSRDGSI  242 (424)
Q Consensus       171 ~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~---~-----~~~i~~~~~~~~~~~l~~~~~dg~i  242 (424)
                      +.+|.+.|.++ +++++  ..+++|+.|.+|++||++-..++..+.   +     ...|.+++..|.|++|++|-.|...
T Consensus       179 ~sghtghilal-yswn~--~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc  255 (350)
T KOG0641|consen  179 LSGHTGHILAL-YSWNG--AMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSC  255 (350)
T ss_pred             ecCCcccEEEE-EEecC--cEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCce
Confidence            89999999876 45666  799999999999999999888887765   2     2578999999999999999999999


Q ss_pred             EEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCC----CcEEEEEeccCCCeeEEE
Q 014475          243 YIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPIT----HNIVRMFRLAKGPVNNIL  317 (424)
Q Consensus       243 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~----~~~~~~~~~~~~~v~~l~  317 (424)
                      .+||++.+         ++++.+..|...|.++.|+| ..++++++.|..|++-|+.-    .-++.....|...+..+.
T Consensus       256 ~lydirg~---------r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~r  326 (350)
T KOG0641|consen  256 MLYDIRGG---------RMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCR  326 (350)
T ss_pred             EEEEeeCC---------ceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEeccCceEEEE
Confidence            99999997         77889999999999999999 88999999999999999863    223455567999999999


Q ss_pred             EEecCceeeeccCCCceeeccCC
Q 014475          318 VVRRPLYLNLGSFSNPHTSSRRH  340 (424)
Q Consensus       318 ~s~~~~~l~~~~~d~~i~iw~~~  340 (424)
                      |+|+.-.+++.+.|.++.+|.++
T Consensus       327 wh~~d~sfisssadkt~tlwa~~  349 (350)
T KOG0641|consen  327 WHPQDFSFISSSADKTATLWALN  349 (350)
T ss_pred             ecCccceeeeccCcceEEEeccC
Confidence            99999999999999999999875

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=100.00  E-value=1e-32  Score=215.63  Aligned_cols=269  Identities=20%  Similarity=0.329  Sum_probs=234.7

Q ss_pred             EEEeecCCCCCceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCceeeeecCCCC
Q 014475            3 LLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSLPAEP   82 (424)
Q Consensus         3 ~~lat~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~~~~~~~   82 (424)
                      .+|++++ +||.-.+-+-++|.-+-++.+|.   ..|....  ...+...-|+++.| =+-++||.-++.......|..-
T Consensus        30 ~flisa~-kd~~pmlr~g~tgdwigtfeghk---gavw~~~--l~~na~~aasaaad-ftakvw~a~tgdelhsf~hkhi  102 (334)
T KOG0278|consen   30 YFLISAS-KDGKPMLRNGDTGDWIGTFEGHK---GAVWSAT--LNKNATRAASAAAD-FTAKVWDAVTGDELHSFEHKHI  102 (334)
T ss_pred             eEEEEec-cCCCchhccCCCCCcEEeeeccC---cceeeee--cCchhhhhhhhccc-chhhhhhhhhhhhhhhhhhhhe
Confidence            5789999 99999999999999999998876   4566555  66666677777776 9999999999888888889999


Q ss_pred             eeEEEECCCCCEEEEecCCCcEEEEEccCc-ceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhccc
Q 014475           83 IKPIAANSHGTYIAGGGQSGDIYMWEVASG-RLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQ  161 (424)
Q Consensus        83 v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~  161 (424)
                      |.+++|+.|.++|++|+.+..++|||++.. .+...+.+|.+.|..+.|....+.+++++.|++|++||.+++.      
T Consensus       103 vk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt------  176 (334)
T KOG0278|consen  103 VKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGT------  176 (334)
T ss_pred             eeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCc------
Confidence            999999999999999999999999999765 4567889999999999999999999999999999999997743      


Q ss_pred             ccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeeecCcceeEEEECCCCCEEEEEeCCCc
Q 014475          162 RASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGS  241 (424)
Q Consensus       162 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~  241 (424)
                           .++.+. .+.+|+++.+++++   .+++....+.|.+||..+..+++.+..+..|.+..++|+...+++|+.|..
T Consensus       177 -----~v~sL~-~~s~VtSlEvs~dG---~ilTia~gssV~Fwdaksf~~lKs~k~P~nV~SASL~P~k~~fVaGged~~  247 (334)
T KOG0278|consen  177 -----EVQSLE-FNSPVTSLEVSQDG---RILTIAYGSSVKFWDAKSFGLLKSYKMPCNVESASLHPKKEFFVAGGEDFK  247 (334)
T ss_pred             -----EEEEEe-cCCCCcceeeccCC---CEEEEecCceeEEeccccccceeeccCccccccccccCCCceEEecCcceE
Confidence                 233333 45689999999997   455666678899999999999999999999999999999999999999999


Q ss_pred             EEEEEcCCCCCCCCCcCceeeee-ecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCCCcE
Q 014475          242 IYIAALNAESPSTSSYGMHIIGS-LSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNI  302 (424)
Q Consensus       242 i~i~d~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~  302 (424)
                      ++.||..++.         .+.. .++|.++|.|+.|+| |...++|++||+|++|.+..++.
T Consensus       248 ~~kfDy~Tge---------Ei~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~~  301 (334)
T KOG0278|consen  248 VYKFDYNTGE---------EIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGKT  301 (334)
T ss_pred             EEEEeccCCc---------eeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEecCCCc
Confidence            9999999984         3333 589999999999999 99999999999999999876653

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=100.00  E-value=5.1e-32  Score=232.06  Aligned_cols=285  Identities=14%  Similarity=0.174  Sum_probs=226.0

Q ss_pred             CCCceEEecceeecCCCccccCCCCceeEEEEECCCCceeee------ecCCCCeeEEEECCCCCEEEEecCCCcEEEEE
Q 014475           35 PPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVK------SLPAEPIKPIAANSHGTYIAGGGQSGDIYMWE  108 (424)
Q Consensus        35 ~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~------~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd  108 (424)
                      +...|.+++  +.|.|..+++|+.| .+|++||+.......+      ......|++++|++.|..|++.+.....+|+|
T Consensus       166 gtk~Vsal~--~Dp~GaR~~sGs~D-y~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl~D  242 (641)
T KOG0772|consen  166 GTKIVSALA--VDPSGARFVSGSLD-YTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAKLLD  242 (641)
T ss_pred             CceEEEEee--ecCCCceeeecccc-ceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcceeEEc
Confidence            446788888  99999999999998 9999999986553322      22367899999999999999888888999999


Q ss_pred             ccCcceee-------------eeccccCCeEEEEEccC-CcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCC
Q 014475          109 VASGRLLK-------------KWHAHYRAVTCLVFSED-GSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGH  174 (424)
Q Consensus       109 ~~~~~~~~-------------~~~~~~~~i~~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  174 (424)
                      -. |..+.             ..++|...++|.+|+|. .+.+++++.||++++||+++.....+..     ..+...+.
T Consensus       243 Rd-G~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVi-----k~k~~~g~  316 (641)
T KOG0772|consen  243 RD-GFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVI-----KTKPAGGK  316 (641)
T ss_pred             cC-CceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEE-----eeccCCCc
Confidence            54 43222             22689999999999994 4579999999999999997643211110     01112345


Q ss_pred             cCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCcee--eeee--cCc--ceeEEEECCCCCEEEEEeCCCcEEEEEcC
Q 014475          175 TLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLL--RNIV--FPS--VIDAIALDPAEHVFYAGSRDGSIYIAALN  248 (424)
Q Consensus       175 ~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~--~~~~--~~~--~i~~~~~~~~~~~l~~~~~dg~i~i~d~~  248 (424)
                      .-+++.++|++++  +.+++|+.||.|.+|+......-  ..+.  |..  .|+++.|+++|++|++-+.|+.+++||++
T Consensus       317 Rv~~tsC~~nrdg--~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLr  394 (641)
T KOG0772|consen  317 RVPVTSCAWNRDG--KLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLR  394 (641)
T ss_pred             ccCceeeecCCCc--chhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeecc
Confidence            5678899999999  89999999999999997644322  2222  544  89999999999999999999999999999


Q ss_pred             CCCCCCCCcCceeeeeeccc--CcCeEEEEecC-CCEEEEeC------CCCcEEEEeCCCCcEEEEEeccCCCeeEEEEE
Q 014475          249 AESPSTSSYGMHIIGSLSDH--SKAVTCLAYST-GDLLISGS------EDGMVRVWDPITHNIVRMFRLAKGPVNNILVV  319 (424)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~--~~~i~~~~~~~-~~~l~t~~------~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s  319 (424)
                      ..+        +++....+-  ..+-+.++|+| .++|++|.      ..|.+.+||..+.+.+..+.-....|..+.|+
T Consensus       395 q~k--------kpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~Wh  466 (641)
T KOG0772|consen  395 QFK--------KPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWH  466 (641)
T ss_pred             ccc--------cchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeec
Confidence            976        444444432  34567789999 88888886      35789999999999999998888899999999


Q ss_pred             ecCceeeeccCCCceeecc
Q 014475          320 RRPLYLNLGSFSNPHTSSR  338 (424)
Q Consensus       320 ~~~~~l~~~~~d~~i~iw~  338 (424)
                      |.-+.|.+|+.||.++++-
T Consensus       467 pkLNQi~~gsgdG~~~vyY  485 (641)
T KOG0772|consen  467 PKLNQIFAGSGDGTAHVYY  485 (641)
T ss_pred             chhhheeeecCCCceEEEE
Confidence            9999999999999998763

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=2.3e-31  Score=213.60  Aligned_cols=280  Identities=18%  Similarity=0.273  Sum_probs=220.0

Q ss_pred             EeeCCCCCCCceEEecceeecCCCccc-cCCCCceeEEEEECCCC-cee--eeecCCCCeeEEEECCCCCEEEEecCCCc
Q 014475           28 RYKSCASPPHGLACVGQRFLASSQLRE-QPSASSGSILYWSWSKP-QVE--VKSLPAEPIKPIAANSHGTYIAGGGQSGD  103 (424)
Q Consensus        28 ~~~~~~~~~~~v~~~~~~~~~~~~~l~-~~~~~~g~i~vwd~~~~-~~~--~~~~~~~~v~~~~~s~~~~~l~~~~~dg~  103 (424)
                      .+.-...+.+.|.+++  |+|....++ +++.| |+|++|+++.. ...  ....|.++|.+++|+.||..+++|+.|+.
T Consensus        19 d~ev~~pP~DsIS~l~--FSP~~~~~~~A~SWD-~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~   95 (347)
T KOG0647|consen   19 DYEVPNPPEDSISALA--FSPQADNLLAAGSWD-GTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQ   95 (347)
T ss_pred             ceecCCCcccchheeE--eccccCceEEecccC-CceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCc
Confidence            3444556778899999  999666666 55555 99999999863 332  33457999999999999999999999999


Q ss_pred             EEEEEccCcceeeeeccccCCeEEEEEccCCc--EEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEE
Q 014475          104 IYMWEVASGRLLKKWHAHYRAVTCLVFSEDGS--FLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDI  181 (424)
Q Consensus       104 v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  181 (424)
                      +++||+.+++ ...+..|.++|.++.|-+...  .|+|||.|.+|+.||.+.           ..++.++. -..++.++
T Consensus        96 ~k~wDL~S~Q-~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~-----------~~pv~t~~-LPeRvYa~  162 (347)
T KOG0647|consen   96 AKLWDLASGQ-VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRS-----------SNPVATLQ-LPERVYAA  162 (347)
T ss_pred             eEEEEccCCC-eeeeeecccceeEEEEecCCCcceeEecccccceeecccCC-----------CCeeeeee-ccceeeeh
Confidence            9999999994 566778999999999987554  899999999999999965           22333333 23344444


Q ss_pred             EEEEcCceeEEEEEeCCCcEEEEecCCCceeee-ee--cCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcC
Q 014475          182 VIGYGGVSATIVSASEDRTCKVWSLLKGRLLRN-IV--FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYG  258 (424)
Q Consensus       182 ~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~-~~--~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  258 (424)
                      ..-  .  ..++.+..+..|.+|+++++..... +.  ..-.++|++..++....+.|+-+|++.+..++.+.+ ...+.
T Consensus       163 Dv~--~--pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~-~~nFt  237 (347)
T KOG0647|consen  163 DVL--Y--PMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNP-KDNFT  237 (347)
T ss_pred             hcc--C--ceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCc-cCcee
Confidence            432  2  6788899999999999976643322 22  456789999999988889999999999999998755 44444


Q ss_pred             ceeeeeec---ccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCCCcEEEEEeccCCCeeEEEEEecCceeeec
Q 014475          259 MHIIGSLS---DHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLG  328 (424)
Q Consensus       259 ~~~~~~~~---~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~  328 (424)
                      +++.+...   +.-..|++++|+| ...|+|++.||++.+||-.....+++.+.|..+|++..|+.+|.++|-+
T Consensus       238 FkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~G~ifaYA  311 (347)
T KOG0647|consen  238 FKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQPITCCSFNRNGSIFAYA  311 (347)
T ss_pred             EEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhhhhhccCcCCCccceeEecCCCCEEEEE
Confidence            44443311   1234688899999 8899999999999999999999999999999999999999999998754

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=2.3e-31  Score=235.31  Aligned_cols=267  Identities=19%  Similarity=0.299  Sum_probs=232.2

Q ss_pred             EEEeecCCCCCceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCcee-eeec-CC
Q 014475            3 LLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVE-VKSL-PA   80 (424)
Q Consensus         3 ~~lat~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~-~~~~-~~   80 (424)
                      +.||.|.  ...|.+|+..+++...-....   ...|+++.  |+++|.+|+++..+ |.|.|||....+.. .... |.
T Consensus       189 n~laVal--g~~vylW~~~s~~v~~l~~~~---~~~vtSv~--ws~~G~~LavG~~~-g~v~iwD~~~~k~~~~~~~~h~  260 (484)
T KOG0305|consen  189 NVLAVAL--GQSVYLWSASSGSVTELCSFG---EELVTSVK--WSPDGSHLAVGTSD-GTVQIWDVKEQKKTRTLRGSHA  260 (484)
T ss_pred             CeEEEEe--cceEEEEecCCCceEEeEecC---CCceEEEE--ECCCCCEEEEeecC-CeEEEEehhhccccccccCCcC
Confidence            4566666  458999999999865544332   57899999  99999999999998 99999998766544 2333 89


Q ss_pred             CCeeEEEECCCCCEEEEecCCCcEEEEEccCcceeee-eccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhc
Q 014475           81 EPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKK-WHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECE  159 (424)
Q Consensus        81 ~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~-~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~  159 (424)
                      ..|-+++|+  +..+.+|+.++.|..+|++..+.... +.+|...|..++|++|++++++|+.|+.+.|||..       
T Consensus       261 ~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~-------  331 (484)
T KOG0305|consen  261 SRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGL-------  331 (484)
T ss_pred             ceeEEEecc--CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCC-------
Confidence            999999998  77899999999999999998876655 88999999999999999999999999999999993       


Q ss_pred             ccccccceEEeecCCcCceeEEEEEEcCceeEEEEEe--CCCcEEEEecCCCceeeeeecCcceeEEEECCCCCEEEE--
Q 014475          160 SQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSAS--EDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYA--  235 (424)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~--~d~~v~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~--  235 (424)
                          ...+...+..|...|.+++|+|-.. ..||+|+  .|+.|++||..+++.+..+.....|..+.|++..+-+++  
T Consensus       332 ----~~~p~~~~~~H~aAVKA~awcP~q~-~lLAsGGGs~D~~i~fwn~~~g~~i~~vdtgsQVcsL~Wsk~~kEi~sth  406 (484)
T KOG0305|consen  332 ----SPEPKFTFTEHTAAVKALAWCPWQS-GLLATGGGSADRCIKFWNTNTGARIDSVDTGSQVCSLIWSKKYKELLSTH  406 (484)
T ss_pred             ----CccccEEEeccceeeeEeeeCCCcc-CceEEcCCCcccEEEEEEcCCCcEecccccCCceeeEEEcCCCCEEEEec
Confidence                3456778899999999999999865 7888875  589999999999999999999999999999998877766  


Q ss_pred             EeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCCC
Q 014475          236 GSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITH  300 (424)
Q Consensus       236 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~  300 (424)
                      |..++.|.||+..+.         ..+..+.+|...|..++++| +..+++|+.|.++++|++-..
T Consensus       407 G~s~n~i~lw~~ps~---------~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~~  463 (484)
T KOG0305|consen  407 GYSENQITLWKYPSM---------KLVAELLGHTSRVLYLALSPDGETIVTGAADETLRFWNLFDE  463 (484)
T ss_pred             CCCCCcEEEEecccc---------ceeeeecCCcceeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence            456779999999984         67889999999999999999 999999999999999998765

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=100.00  E-value=2.6e-31  Score=243.86  Aligned_cols=279  Identities=21%  Similarity=0.347  Sum_probs=242.9

Q ss_pred             CCceEEecceeecCCCccccCCCCceeEEEEECCCCceee--eecCCCCeeEEEECCCCCEEEEecCCCcEEEEEccCcc
Q 014475           36 PHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEV--KSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGR  113 (424)
Q Consensus        36 ~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~--~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~  113 (424)
                      ...+.+..  |.  ...+++++.+ ++|++|+...+....  ...|.+.|.++++..-+..+++|+.|.++++||..+|+
T Consensus       208 ~~~~~~~q--~~--~~~~~~~s~~-~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~  282 (537)
T KOG0274|consen  208 DHVVLCLQ--LH--DGFFKSGSDD-STLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGE  282 (537)
T ss_pred             cchhhhhe--ee--cCeEEecCCC-ceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCc
Confidence            44556655  55  5566677776 999999998877654  46799999999998888999999999999999999999


Q ss_pred             eeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEE
Q 014475          114 LLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIV  193 (424)
Q Consensus       114 ~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~  193 (424)
                      +...+.+|.+.|.++...  ...+++|+.|.+|++|++.           ....+..+.+|..+|.++...  +  ..++
T Consensus       283 C~~~l~gh~stv~~~~~~--~~~~~sgs~D~tVkVW~v~-----------n~~~l~l~~~h~~~V~~v~~~--~--~~lv  345 (537)
T KOG0274|consen  283 CTHSLQGHTSSVRCLTID--PFLLVSGSRDNTVKVWDVT-----------NGACLNLLRGHTGPVNCVQLD--E--PLLV  345 (537)
T ss_pred             EEEEecCCCceEEEEEcc--CceEeeccCCceEEEEecc-----------CcceEEEeccccccEEEEEec--C--CEEE
Confidence            999999999999999886  4578889999999999995           456677888899999999987  3  7999


Q ss_pred             EEeCCCcEEEEecCCCceeeeee-cCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCe
Q 014475          194 SASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAV  272 (424)
Q Consensus       194 ~~~~d~~v~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i  272 (424)
                      +|+.|++|++||+.++++++.+. |...|.++.+.+. ..++.|+.|+.|++||+++..        +++..+.+|...+
T Consensus       346 sgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~--------~c~~tl~~h~~~v  416 (537)
T KOG0274|consen  346 SGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKR--------KCIHTLQGHTSLV  416 (537)
T ss_pred             EEecCceEEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchh--------hhhhhhcCCcccc
Confidence            99999999999999999999998 9999999988766 899999999999999999963        5788899999988


Q ss_pred             EEEEecCCCEEEEeCCCCcEEEEeCCCCcEEEEEec-cCCCeeEEEEEecCceeeeccCCCceeeccCCCCCCCCCc
Q 014475          273 TCLAYSTGDLLISGSEDGMVRVWDPITHNIVRMFRL-AKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGSQLPPPL  348 (424)
Q Consensus       273 ~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~-~~~~v~~l~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~  348 (424)
                      ..+.+. +++|++++.|++|++||..++++++.+.+ |.+.|..+++.  ...+++++.|+.+++||++++++...+
T Consensus       417 ~~l~~~-~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~--~~~il~s~~~~~~~l~dl~~~~~~~~l  490 (537)
T KOG0274|consen  417 SSLLLR-DNFLVSSSADGTIKLWDAEEGECLRTLEGRHVGGVSALALG--KEEILCSSDDGSVKLWDLRSGTLIRTL  490 (537)
T ss_pred             cccccc-cceeEeccccccEEEeecccCceeeeeccCCcccEEEeecC--cceEEEEecCCeeEEEecccCchhhhh
Confidence            776654 79999999999999999999999999998 66888888887  467899999999999999988765543

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=3.2e-31  Score=213.53  Aligned_cols=277  Identities=17%  Similarity=0.294  Sum_probs=224.5

Q ss_pred             CCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCceeeeecCCCCeeEEEECCCCCEEEEecCCCcEEEEEccCc
Q 014475           33 ASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASG  112 (424)
Q Consensus        33 ~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~  112 (424)
                      ..+...|..+.  |+|.++.|++++.| |++++|++...+......|..++.+++|.+ ...+++|+.||.|+.+|+.++
T Consensus        10 npP~d~IS~v~--f~~~~~~LLvssWD-gslrlYdv~~~~l~~~~~~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~   85 (323)
T KOG1036|consen   10 NPPEDGISSVK--FSPSSSDLLVSSWD-GSLRLYDVPANSLKLKFKHGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTG   85 (323)
T ss_pred             CCChhceeeEE--EcCcCCcEEEEecc-CcEEEEeccchhhhhheecCCceeeeeccC-CceEEEeccCceEEEEEecCC
Confidence            34567899998  99999999999998 999999999998888889999999999997 456889999999999999888


Q ss_pred             ceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEE
Q 014475          113 RLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATI  192 (424)
Q Consensus       113 ~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l  192 (424)
                      ... .+..|..+|.|+.+++....+++|+.|++|++||.+..           .....+. ....|.++...  +  +.|
T Consensus        86 ~~~-~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~-----------~~~~~~d-~~kkVy~~~v~--g--~~L  148 (323)
T KOG1036|consen   86 NED-QIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNK-----------VVVGTFD-QGKKVYCMDVS--G--NRL  148 (323)
T ss_pred             cce-eeccCCCceEEEEeeccCCeEEEcccCccEEEEecccc-----------ccccccc-cCceEEEEecc--C--CEE
Confidence            754 44569999999999998889999999999999999641           1112222 22366665553  3  689


Q ss_pred             EEEeCCCcEEEEecCCCceeeee---ecCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCC-CCCCCCcCceeeeeecc-
Q 014475          193 VSASEDRTCKVWSLLKGRLLRNI---VFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAE-SPSTSSYGMHIIGSLSD-  267 (424)
Q Consensus       193 ~~~~~d~~v~iwd~~~~~~~~~~---~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~~~~~~-  267 (424)
                      +.|+.+..+.+||+++.......   ...-.++++++-|++.-+++++-||++.+=.++.. ......+.+++...... 
T Consensus       149 vVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~  228 (323)
T KOG1036|consen  149 VVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKD  228 (323)
T ss_pred             EEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCC
Confidence            99999999999999987654422   25678999999998888999999999998777665 22222233333322221 


Q ss_pred             --cCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCCCcEEEEEeccCCCeeEEEEEecCceeeeccC
Q 014475          268 --HSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSF  330 (424)
Q Consensus       268 --~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~  330 (424)
                        --.+|++++|+| ...|+||+.||.|.+||+.+.+.+..+......|.+++|+.+|..||+++.
T Consensus       229 ~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia~s  294 (323)
T KOG1036|consen  229 TEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSMDGSLLAIASS  294 (323)
T ss_pred             ceEEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhccCCCCceEEEEeccCCCeEEEEec
Confidence              135799999999 999999999999999999999999999888889999999999999999863

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=100.00  E-value=2.4e-31  Score=209.25  Aligned_cols=245  Identities=17%  Similarity=0.286  Sum_probs=217.1

Q ss_pred             ecCCCCeeEEEECCCCCEEEEecCCCcEEEEEccCcceeee--eccccCCeEEEEEcc-CCcEEEEeeCCCcEEEEeCCc
Q 014475           77 SLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKK--WHAHYRAVTCLVFSE-DGSFLISGSEDGCVRIWSLLT  153 (424)
Q Consensus        77 ~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~--~~~~~~~i~~~~~~~-~~~~l~s~~~dg~i~iwd~~~  153 (424)
                      ..|..+|.+++|+.+|..|++|+.|+++.+|+++..+....  .++|.+.|..++|+| +...|++++.|.+|++||++.
T Consensus        17 ~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~   96 (313)
T KOG1407|consen   17 QGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRS   96 (313)
T ss_pred             hhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEecc
Confidence            45778999999999999999999999999999988765544  478999999999988 677899999999999999965


Q ss_pred             ccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeeecCcceeEEEECCCCCEE
Q 014475          154 VFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVF  233 (424)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l  233 (424)
                                 .++..........+ -+.|+|++  ++++.++.|..|.+.|.++.+.....+....++.++|+-++.++
T Consensus        97 -----------~k~~~~i~~~~eni-~i~wsp~g--~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~F  162 (313)
T KOG1407|consen   97 -----------GKCTARIETKGENI-NITWSPDG--EYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLF  162 (313)
T ss_pred             -----------CcEEEEeeccCcce-EEEEcCCC--CEEEEecCcccEEEEEecccceeehhcccceeeeeeecCCCCEE
Confidence                       33444444444444 46899998  89999999999999999999999998889999999999888988


Q ss_pred             EEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCCCcEEEEEeccCCC
Q 014475          234 YAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGP  312 (424)
Q Consensus       234 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~  312 (424)
                      +.....|+|.|.....-         +++..+++|.....|+.|+| |++||+|+.|..+.+||+...-+++.+..+.-|
T Consensus       163 flt~GlG~v~ILsypsL---------kpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwp  233 (313)
T KOG1407|consen  163 FLTNGLGCVEILSYPSL---------KPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWP  233 (313)
T ss_pred             EEecCCceEEEEecccc---------ccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCc
Confidence            88888899999998864         77889999999999999999 999999999999999999999999999999999


Q ss_pred             eeEEEEEecCceeeeccCCCceeeccCCCCCC
Q 014475          313 VNNILVVRRPLYLNLGSFSNPHTSSRRHGSQL  344 (424)
Q Consensus       313 v~~l~~s~~~~~l~~~~~d~~i~iw~~~~~~~  344 (424)
                      |..+.|+.||++||+||+|-.|-|=+++++..
T Consensus       234 VRTlSFS~dg~~lASaSEDh~IDIA~vetGd~  265 (313)
T KOG1407|consen  234 VRTLSFSHDGRMLASASEDHFIDIAEVETGDR  265 (313)
T ss_pred             eEEEEeccCcceeeccCccceEEeEecccCCe
Confidence            99999999999999999999998887776653

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=100.00  E-value=9e-31  Score=219.90  Aligned_cols=268  Identities=22%  Similarity=0.333  Sum_probs=234.7

Q ss_pred             EEEeecCCCCCceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCce-eeeecCCC
Q 014475            3 LLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQV-EVKSLPAE   81 (424)
Q Consensus         3 ~~lat~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~-~~~~~~~~   81 (424)
                      ..+.||+ .|..+.++|..+++.+..+++|.   ..|+.+.  |+++...+++++.+ -.|+||....... .....|.+
T Consensus       232 ~~ilTGG-~d~~av~~d~~s~q~l~~~~Gh~---kki~~v~--~~~~~~~v~~aSad-~~i~vws~~~~s~~~~~~~h~~  304 (506)
T KOG0289|consen  232 SKILTGG-EDKTAVLFDKPSNQILATLKGHT---KKITSVK--FHKDLDTVITASAD-EIIRVWSVPLSSEPTSSRPHEE  304 (506)
T ss_pred             CcceecC-CCCceEEEecchhhhhhhccCcc---eEEEEEE--eccchhheeecCCc-ceEEeeccccccCccccccccc
Confidence            3578999 99999999999999998888755   5677777  99999999999998 9999999876543 35567899


Q ss_pred             CeeEEEECCCCCEEEEecCCCcEEEEEccCcceeeeecc--ccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhc
Q 014475           82 PIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHA--HYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECE  159 (424)
Q Consensus        82 ~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~  159 (424)
                      +|+.+..+|.|.||++++.||+..+.|++++..+.....  ..-.+++.+|+|||..|.+|..||.|++||+.+      
T Consensus       305 ~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks------  378 (506)
T KOG0289|consen  305 PVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKS------  378 (506)
T ss_pred             cceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCC------
Confidence            999999999999999999999999999999988776653  234589999999999999999999999999954      


Q ss_pred             ccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeeecCc--ceeEEEECCCCCEEEEEe
Q 014475          160 SQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPS--VIDAIALDPAEHVFYAGS  237 (424)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~--~i~~~~~~~~~~~l~~~~  237 (424)
                           ...+..|.+|.++|..++|+.+|  .+|++++.|+.|++||+|.-+..+.+..+.  .+.+++|.+.|.+|+.++
T Consensus       379 -----~~~~a~Fpght~~vk~i~FsENG--Y~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g  451 (506)
T KOG0289|consen  379 -----QTNVAKFPGHTGPVKAISFSENG--YWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAG  451 (506)
T ss_pred             -----ccccccCCCCCCceeEEEeccCc--eEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEeec
Confidence                 33577889999999999999999  999999999999999999999888887544  599999999999999998


Q ss_pred             CCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeC
Q 014475          238 RDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDP  297 (424)
Q Consensus       238 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~  297 (424)
                      .+=.|++++-.+..       |..+..+..|.+..+.+.|.. ..++++++.|..++++.+
T Consensus       452 ~~l~Vy~~~k~~k~-------W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~  505 (506)
T KOG0289|consen  452 SDLQVYICKKKTKS-------WTEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLYAL  505 (506)
T ss_pred             ceeEEEEEeccccc-------ceeeehhhhcccccceeeecccceEEeeccchhheEEeec
Confidence            88777777765554       678888889999999999998 899999999999988764

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.6e-31  Score=209.45  Aligned_cols=263  Identities=16%  Similarity=0.253  Sum_probs=217.7

Q ss_pred             CCceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCceee--eecCCCCeeEEEEC
Q 014475           12 DTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEV--KSLPAEPIKPIAAN   89 (424)
Q Consensus        12 dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~--~~~~~~~v~~~~~s   89 (424)
                      .|++.|-++..++-+...... .-.+++..++  |+++....+.+...||++++||...+...+  ...|...|.++.|+
T Consensus        37 ~G~L~ile~~~~~gi~e~~s~-d~~D~LfdV~--Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn  113 (311)
T KOG0277|consen   37 NGRLFILEVTDPKGIQECQSY-DTEDGLFDVA--WSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWN  113 (311)
T ss_pred             CceEEEEecCCCCCeEEEEee-ecccceeEee--ecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccc
Confidence            588999998766666555433 2457788888  998766555444444999999976555443  35689999999999


Q ss_pred             C-CCCEEEEecCCCcEEEEEccCcceeeeeccccCCeEEEEEcc-CCcEEEEeeCCCcEEEEeCCcccchhcccccccce
Q 014475           90 S-HGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSE-DGSFLISGSEDGCVRIWSLLTVFEECESQRASHLY  167 (424)
Q Consensus        90 ~-~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~  167 (424)
                      + ++..+++++.|++|++|+...++.++++.+|...|....|+| .++.+++++.|+.+++||++.         . .+.
T Consensus       114 ~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~---------~-gk~  183 (311)
T KOG0277|consen  114 TVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRS---------P-GKF  183 (311)
T ss_pred             cccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecC---------C-Cce
Confidence            8 567788889999999999999999999999999999999999 678999999999999999965         2 222


Q ss_pred             EEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCc-eeeeee-cCcceeEEEECCC-CCEEEEEeCCCcEEE
Q 014475          168 LHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGR-LLRNIV-FPSVIDAIALDPA-EHVFYAGSRDGSIYI  244 (424)
Q Consensus       168 ~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~-~~~~~~-~~~~i~~~~~~~~-~~~l~~~~~dg~i~i  244 (424)
                      + .+..|...|.++.|+.-.. +.++||+.|+.|+.||+++-+ ++..+. |.-.|+.+.|+|. ...|++++.|=++++
T Consensus       184 ~-~i~ah~~Eil~cdw~ky~~-~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~ri  261 (311)
T KOG0277|consen  184 M-SIEAHNSEILCCDWSKYNH-NVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRI  261 (311)
T ss_pred             e-EEEeccceeEeecccccCC-cEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhccccceEEe
Confidence            3 3788999999999998665 899999999999999998754 444444 8889999999995 577889999999999


Q ss_pred             EEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC--CCEEEEeCCCCcEEEEeC
Q 014475          245 AALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST--GDLLISGSEDGMVRVWDP  297 (424)
Q Consensus       245 ~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~l~t~~~dg~i~iwd~  297 (424)
                      ||...+.        ..+.+...|..-+..+.|++  ..++|+++.|+.++||+.
T Consensus       262 w~~~~~d--------s~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p  308 (311)
T KOG0277|consen  262 WDPERQD--------SAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP  308 (311)
T ss_pred             cccccch--------hhhhhhhccceEEeccccccccCceeeecccccceeeecc
Confidence            9998764        55666777999999999999  889999999999999984

>PTZ00421 coronin; Provisional

Probab=100.00  E-value=6.9e-30  Score=234.29  Aligned_cols=254  Identities=14%  Similarity=0.196  Sum_probs=197.6

Q ss_pred             eecCCCccccCCCCceeEEEEECCCCce--------------eeeecCCCCeeEEEECC-CCCEEEEecCCCcEEEEEcc
Q 014475           46 FLASSQLREQPSASSGSILYWSWSKPQV--------------EVKSLPAEPIKPIAANS-HGTYIAGGGQSGDIYMWEVA  110 (424)
Q Consensus        46 ~~~~~~~l~~~~~~~g~i~vwd~~~~~~--------------~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~v~iwd~~  110 (424)
                      .++++..+++++.+ .....|+...+..              .....|.++|.+++|+| ++++|++|+.|++|++||+.
T Consensus        28 ~~~d~~~~~~~n~~-~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~  106 (493)
T PTZ00421         28 ALWDCSNTIACNDR-FIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIP  106 (493)
T ss_pred             ccCCCCCcEeECCc-eEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecC
Confidence            55665656655554 5666666443221              12346889999999999 88999999999999999997


Q ss_pred             Cc-------ceeeeeccccCCeEEEEEccCC-cEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEE
Q 014475          111 SG-------RLLKKWHAHYRAVTCLVFSEDG-SFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIV  182 (424)
Q Consensus       111 ~~-------~~~~~~~~~~~~i~~~~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  182 (424)
                      ++       +.+..+.+|...|.+++|+|++ ++|++++.|+.|++||+++           ......+.+|...|.+++
T Consensus       107 ~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~t-----------g~~~~~l~~h~~~V~sla  175 (493)
T PTZ00421        107 EEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVER-----------GKAVEVIKCHSDQITSLE  175 (493)
T ss_pred             CCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCC-----------CeEEEEEcCCCCceEEEE
Confidence            65       3466788999999999999975 6899999999999999965           234567788999999999


Q ss_pred             EEEcCceeEEEEEeCCCcEEEEecCCCceeeeee-cCc-ceeEEEECCCCCEEEEEe----CCCcEEEEEcCCCCCCCCC
Q 014475          183 IGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-FPS-VIDAIALDPAEHVFYAGS----RDGSIYIAALNAESPSTSS  256 (424)
Q Consensus       183 ~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~-~~~-~i~~~~~~~~~~~l~~~~----~dg~i~i~d~~~~~~~~~~  256 (424)
                      |++++  ..|++++.|+.|++||+++++.+..+. |.. ....+.|.+++..+++++    .|+.|++||++...     
T Consensus       176 ~spdG--~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~-----  248 (493)
T PTZ00421        176 WNLDG--SLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMA-----  248 (493)
T ss_pred             EECCC--CEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCC-----
Confidence            99998  899999999999999999999887776 443 345678899877777654    47899999998754     


Q ss_pred             cCceeeeeecc-cCcCeEEEEecC-CCEEEEeC-CCCcEEEEeCCCCcEEEEEec-cCCCeeEEEEEec
Q 014475          257 YGMHIIGSLSD-HSKAVTCLAYST-GDLLISGS-EDGMVRVWDPITHNIVRMFRL-AKGPVNNILVVRR  321 (424)
Q Consensus       257 ~~~~~~~~~~~-~~~~i~~~~~~~-~~~l~t~~-~dg~i~iwd~~~~~~~~~~~~-~~~~v~~l~~s~~  321 (424)
                         .+...... +...+....|++ +++|++++ .|+.|++||+.+++++..... +..++..++|.|.
T Consensus       249 ---~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s~~~~~g~~~~pk  314 (493)
T PTZ00421        249 ---SPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYSSVEPHKGLCMMPK  314 (493)
T ss_pred             ---CceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeeccCCCCCcceEeccc
Confidence               22333322 234555667888 88888877 599999999999988776553 4457889999885

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=100.00  E-value=2e-31  Score=214.69  Aligned_cols=284  Identities=16%  Similarity=0.205  Sum_probs=229.5

Q ss_pred             CCCceEEecceeecCCCccccCCCCceeEEEEECCC------Cc-----------e--eeeecCCCCeeEEEECCCCCEE
Q 014475           35 PPHGLACVGQRFLASSQLREQPSASSGSILYWSWSK------PQ-----------V--EVKSLPAEPIKPIAANSHGTYI   95 (424)
Q Consensus        35 ~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~------~~-----------~--~~~~~~~~~v~~~~~s~~~~~l   95 (424)
                      |...+.+-+  |++||.++++|+.| -.|++.|++.      .+           +  .....|.++|+++.|+|....|
T Consensus       111 HK~~cR~aa--fs~DG~lvATGsaD-~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~IL  187 (430)
T KOG0640|consen  111 HKSPCRAAA--FSPDGSLVATGSAD-ASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETIL  187 (430)
T ss_pred             cccceeeee--eCCCCcEEEccCCc-ceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhheE
Confidence            445566666  99999999999998 9999999871      11           1  1223478999999999999999


Q ss_pred             EEecCCCcEEEEEccCcceeeeec--cccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecC
Q 014475           96 AGGGQSGDIYMWEVASGRLLKKWH--AHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTG  173 (424)
Q Consensus        96 ~~~~~dg~v~iwd~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  173 (424)
                      ++|+.|++|+++|+......+-++  ....+|.++.|+|.|.+|++|.....+++||+++...-        .....-.+
T Consensus       188 iS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~Qcf--------vsanPd~q  259 (430)
T KOG0640|consen  188 ISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCF--------VSANPDDQ  259 (430)
T ss_pred             EeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEe--------eecCcccc
Confidence            999999999999997654333332  24568999999999999999999999999999773221        11112356


Q ss_pred             CcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeee---cCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCC
Q 014475          174 HTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV---FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAE  250 (424)
Q Consensus       174 ~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~---~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  250 (424)
                      |.+.|+++.+++.+  +..++++.||.|++||--+++++..+.   ....|.+..|..+++++++.+.|..+++|.+.++
T Consensus       260 ht~ai~~V~Ys~t~--~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~  337 (430)
T KOG0640|consen  260 HTGAITQVRYSSTG--SLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTG  337 (430)
T ss_pred             cccceeEEEecCCc--cEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCC
Confidence            99999999999998  899999999999999999999998887   3567999999999999999999999999999997


Q ss_pred             CCCCCCcCceeeeeeccc-----CcCeEEEEecC-CCEEEEeC-CCCcEEEEeCCCCcEEEEEe-ccCCCeeEEEEEecC
Q 014475          251 SPSTSSYGMHIIGSLSDH-----SKAVTCLAYST-GDLLISGS-EDGMVRVWDPITHNIVRMFR-LAKGPVNNILVVRRP  322 (424)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~-----~~~i~~~~~~~-~~~l~t~~-~dg~i~iwd~~~~~~~~~~~-~~~~~v~~l~~s~~~  322 (424)
                               +++....+-     ...-+...|+. .++++.-. ..+.+.-||.+++..+..+. +|++++..+.-+|.+
T Consensus       338 ---------R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~  408 (430)
T KOG0640|consen  338 ---------RMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVE  408 (430)
T ss_pred             ---------ceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCCCC
Confidence                     444444432     12223455666 77777765 35779999999987776554 799999999999999


Q ss_pred             ceeeeccCCCceeeccCC
Q 014475          323 LYLNLGSFSNPHTSSRRH  340 (424)
Q Consensus       323 ~~l~~~~~d~~i~iw~~~  340 (424)
                      .-+++++.|-.+++|..+
T Consensus       409 p~FmTcsdD~raRFWyrr  426 (430)
T KOG0640|consen  409 PAFMTCSDDFRARFWYRR  426 (430)
T ss_pred             Cceeeecccceeeeeeec
Confidence            999999999999999765

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=2.7e-29  Score=203.39  Aligned_cols=279  Identities=15%  Similarity=0.165  Sum_probs=225.1

Q ss_pred             CCceEEecceeecCCCccccCCCCceeEEEEECCCCceeeeec-CCCCeeEEEECCCCCEEEEecC--CCcEEEEEccCc
Q 014475           36 PHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSL-PAEPIKPIAANSHGTYIAGGGQ--SGDIYMWEVASG  112 (424)
Q Consensus        36 ~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~--dg~v~iwd~~~~  112 (424)
                      ...+.+++  |+++|..+++++.| ..+++||..++....... +.-.+..++|....+.++.++.  |.+|+..++.+.
T Consensus        14 ~~~i~sl~--fs~~G~~litss~d-Dsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dN   90 (311)
T KOG1446|consen   14 NGKINSLD--FSDDGLLLITSSED-DSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDN   90 (311)
T ss_pred             CCceeEEE--ecCCCCEEEEecCC-CeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEeecC
Confidence            45688888  99999999998876 899999999887765443 4567888888777666776665  889999999999


Q ss_pred             ceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEE
Q 014475          113 RLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATI  192 (424)
Q Consensus       113 ~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l  192 (424)
                      +.++.+.+|...|++++.+|-+..+++++.|++|++||++..         +  +...+..  ..-..+++.|.|  -++
T Consensus        91 kylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~---------~--cqg~l~~--~~~pi~AfDp~G--Lif  155 (311)
T KOG1446|consen   91 KYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVK---------K--CQGLLNL--SGRPIAAFDPEG--LIF  155 (311)
T ss_pred             ceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCC---------C--CceEEec--CCCcceeECCCC--cEE
Confidence            999999999999999999998899999999999999999751         1  1111221  222346788888  788


Q ss_pred             EEEeCCCcEEEEecCCC--ceeeeee----cCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeec
Q 014475          193 VSASEDRTCKVWSLLKG--RLLRNIV----FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLS  266 (424)
Q Consensus       193 ~~~~~d~~v~iwd~~~~--~~~~~~~----~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~  266 (424)
                      |++...+.|++||++.-  .+...+.    .....+.+.|+|+|++++.++..+.+++.|.-.+.         ....+.
T Consensus       156 A~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~---------~~~tfs  226 (311)
T KOG1446|consen  156 ALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGT---------VKSTFS  226 (311)
T ss_pred             EEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCc---------EeeeEe
Confidence            88888889999999863  3444444    24678999999999999999999999999998874         344444


Q ss_pred             ccCcC---eEEEEecC-CCEEEEeCCCCcEEEEeCCCCcEEEEEec-cCCCeeEEEEEecCceeeeccCCCceeeccCCC
Q 014475          267 DHSKA---VTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRL-AKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHG  341 (424)
Q Consensus       267 ~~~~~---i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~~~~~~~-~~~~v~~l~~s~~~~~l~~~~~d~~i~iw~~~~  341 (424)
                      .+...   -....|.| ++++++|+.||+|.+|+++++..+..+.+ +.+++.++.|+|.-.+++++  +..+.+|-...
T Consensus       227 ~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa--~s~l~fw~p~~  304 (311)
T KOG1446|consen  227 GYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSA--SSNLVFWLPDE  304 (311)
T ss_pred             eccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCceeeeeec--CceEEEEeccc
Confidence            44332   25678899 99999999999999999999999999998 68899999999987777765  56788887654


Q ss_pred             CC
Q 014475          342 SQ  343 (424)
Q Consensus       342 ~~  343 (424)
                      .+
T Consensus       305 ~~  306 (311)
T KOG1446|consen  305 DA  306 (311)
T ss_pred             cc
Confidence            43

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=8.5e-30  Score=206.32  Aligned_cols=254  Identities=16%  Similarity=0.231  Sum_probs=215.4

Q ss_pred             CCCCeeEEEECCCCCEEEEecCCCcEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEeeC--CCcEEEEeCCcccc
Q 014475           79 PAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSE--DGCVRIWSLLTVFE  156 (424)
Q Consensus        79 ~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~--dg~i~iwd~~~~~~  156 (424)
                      ....|+++.|+++|.++++++.|.++++||..+++.++++..+.-.+..++|....+.++.++.  |.+|+..++     
T Consensus        13 ~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl-----   87 (311)
T KOG1446|consen   13 TNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSL-----   87 (311)
T ss_pred             CCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEe-----
Confidence            4678999999999999999999999999999999999999888888999999877777777776  889999999     


Q ss_pred             hhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeeecCcceeEEEECCCCCEEEEE
Q 014475          157 ECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAG  236 (424)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~  236 (424)
                            ...+.++.+.+|...|++++.+|.+  ..+++++.|++|++||++..++...+... .-..++++|+|-++|++
T Consensus        88 ------~dNkylRYF~GH~~~V~sL~~sP~~--d~FlS~S~D~tvrLWDlR~~~cqg~l~~~-~~pi~AfDp~GLifA~~  158 (311)
T KOG1446|consen   88 ------HDNKYLRYFPGHKKRVNSLSVSPKD--DTFLSSSLDKTVRLWDLRVKKCQGLLNLS-GRPIAAFDPEGLIFALA  158 (311)
T ss_pred             ------ecCceEEEcCCCCceEEEEEecCCC--CeEEecccCCeEEeeEecCCCCceEEecC-CCcceeECCCCcEEEEe
Confidence                  4577899999999999999999998  89999999999999999988877666533 34457899999999999


Q ss_pred             eCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCCCcEEEEEeccCCCe--
Q 014475          237 SRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPV--  313 (424)
Q Consensus       237 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~v--  313 (424)
                      .....|++||++.-....    +.......+.....+.+.|+| |++++.+...+.+++.|.-+|..+.++..+...-  
T Consensus       159 ~~~~~IkLyD~Rs~dkgP----F~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~  234 (311)
T KOG1446|consen  159 NGSELIKLYDLRSFDKGP----FTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNL  234 (311)
T ss_pred             cCCCeEEEEEecccCCCC----ceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCc
Confidence            988899999999853211    111111114467789999999 9999999999999999999999999998876533  


Q ss_pred             -eEEEEEecCceeeeccCCCceeeccCCCCCCCCCccc
Q 014475          314 -NNILVVRRPLYLNLGSFSNPHTSSRRHGSQLPPPLDK  350 (424)
Q Consensus       314 -~~l~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~  350 (424)
                       -...|+||++++++|+.||+|.+|+++++.....++.
T Consensus       235 ~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~  272 (311)
T KOG1446|consen  235 PLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRG  272 (311)
T ss_pred             ceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecC
Confidence             5778999999999999999999999988765544433

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=100.00  E-value=5.5e-31  Score=222.73  Aligned_cols=254  Identities=16%  Similarity=0.206  Sum_probs=210.6

Q ss_pred             eeecCCCCeeEEEECCC-CCEEEEecCCCcEEEEEccCcc----------eeeeeccccCCeEEEEEcc-CCcEEEEeeC
Q 014475           75 VKSLPAEPIKPIAANSH-GTYIAGGGQSGDIYMWEVASGR----------LLKKWHAHYRAVTCLVFSE-DGSFLISGSE  142 (424)
Q Consensus        75 ~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~v~iwd~~~~~----------~~~~~~~~~~~i~~~~~~~-~~~~l~s~~~  142 (424)
                      .+..|.+.|+.+++.|. ..++|+++..+.|.|||..+..          +...+.+|.+.-.+++|++ ..-.|++++.
T Consensus       119 ~~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~  198 (422)
T KOG0264|consen  119 QKINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSD  198 (422)
T ss_pred             EeccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccC
Confidence            34568999999999995 5567777888999999986532          1226788999888999998 4457999999


Q ss_pred             CCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCC--Cceeeeee-cCc
Q 014475          143 DGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLK--GRLLRNIV-FPS  219 (424)
Q Consensus       143 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~--~~~~~~~~-~~~  219 (424)
                      |+.|++||+......    .....+...+.+|...|..++|++... ..|++++.|+.+.|||+|+  .++..... |.+
T Consensus       199 d~~i~lwdi~~~~~~----~~~~~p~~~~~~h~~~VeDV~~h~~h~-~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~  273 (422)
T KOG0264|consen  199 DHTICLWDINAESKE----DKVVDPKTIFSGHEDVVEDVAWHPLHE-DLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSA  273 (422)
T ss_pred             CCcEEEEeccccccC----CccccceEEeecCCcceehhhccccch-hhheeecCCCeEEEEEcCCCCCCCcccccccCC
Confidence            999999999764332    122345667899999999999999876 7899999999999999995  44444444 899


Q ss_pred             ceeEEEECC-CCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC--CCEEEEeCCCCcEEEEe
Q 014475          220 VIDAIALDP-AEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST--GDLLISGSEDGMVRVWD  296 (424)
Q Consensus       220 ~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~l~t~~~dg~i~iwd  296 (424)
                      .++|++|+| ++..||+|+.|++|.+||+|+..        .++..+.+|...|.++.|+|  ...|++++.|+.+.+||
T Consensus       274 ~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~--------~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWD  345 (422)
T KOG0264|consen  274 EVNCVAFNPFNEFILATGSADKTVALWDLRNLN--------KPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWD  345 (422)
T ss_pred             ceeEEEeCCCCCceEEeccCCCcEEEeechhcc--------cCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEe
Confidence            999999999 66788899999999999999986        67889999999999999999  78999999999999999


Q ss_pred             CCCC--------------cEEEEEeccCCCeeEEEEEecCce-eeeccCCCceeeccCCC
Q 014475          297 PITH--------------NIVRMFRLAKGPVNNILVVRRPLY-LNLGSFSNPHTSSRRHG  341 (424)
Q Consensus       297 ~~~~--------------~~~~~~~~~~~~v~~l~~s~~~~~-l~~~~~d~~i~iw~~~~  341 (424)
                      +..-              +++..-.+|...|..+.|+|+..+ |+++++|+.+.||....
T Consensus       346 ls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~  405 (422)
T KOG0264|consen  346 LSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAE  405 (422)
T ss_pred             ccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence            8642              234566689999999999998765 57899999999999873

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.98  E-value=1.6e-30  Score=234.85  Aligned_cols=320  Identities=19%  Similarity=0.294  Sum_probs=266.5

Q ss_pred             EEEeecCCCCCceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCceee--eecCC
Q 014475            3 LLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEV--KSLPA   80 (424)
Q Consensus         3 ~~lat~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~--~~~~~   80 (424)
                      ..+|.|. .+|+|.|+|++.++.+.+++..   ...|+.++  |..||..+.+++...|.+-+||++..+...  ...|.
T Consensus       215 DVVaiG~-~~G~ViifNlK~dkil~sFk~d---~g~VtslS--FrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~  288 (910)
T KOG1539|consen  215 DVVAIGL-ENGTVIIFNLKFDKILMSFKQD---WGRVTSLS--FRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHY  288 (910)
T ss_pred             eEEEEec-cCceEEEEEcccCcEEEEEEcc---ccceeEEE--eccCCCeeEEeccCCceEEEEEcCCCeeeeeeecccc
Confidence            4688999 9999999999999999999743   36788888  999998777666655999999999887653  34588


Q ss_pred             CCeeEEEECCCCCEEEEecCCCcEEEEEccCc----ceeeeeccccCCeEEEEEc-cCCcEEEEeeCCCcEEEEeCCccc
Q 014475           81 EPIKPIAANSHGTYIAGGGQSGDIYMWEVASG----RLLKKWHAHYRAVTCLVFS-EDGSFLISGSEDGCVRIWSLLTVF  155 (424)
Q Consensus        81 ~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~----~~~~~~~~~~~~i~~~~~~-~~~~~l~s~~~dg~i~iwd~~~~~  155 (424)
                      +.|....|-|....+++++.|..+++|=.+++    +.++.-.+|..+..|+.|. .++.++.+++.|++++.+++....
T Consensus       289 ~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~  368 (910)
T KOG1539|consen  289 GSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISES  368 (910)
T ss_pred             CCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHH
Confidence            99999999999999999999999888866654    4456667899999999998 588899999999988888763211


Q ss_pred             chhcc--------------------------------------------------------------------c------
Q 014475          156 EECES--------------------------------------------------------------------Q------  161 (424)
Q Consensus       156 ~~~~~--------------------------------------------------------------------~------  161 (424)
                      ...+.                                                                    .      
T Consensus       369 ~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~  448 (910)
T KOG1539|consen  369 QSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDD  448 (910)
T ss_pred             HhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccC
Confidence            00000                                                                    0      


Q ss_pred             ----------------------------ccccceEEee---cCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCc
Q 014475          162 ----------------------------RASHLYLHSF---TGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGR  210 (424)
Q Consensus       162 ----------------------------~~~~~~~~~~---~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~  210 (424)
                                                  -........+   ..|..+|++++...-+  +.+++++.+|.+++||..+..
T Consensus       449 ~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n--~~~vsa~~~Gilkfw~f~~k~  526 (910)
T KOG1539|consen  449 INATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTN--RLLVSAGADGILKFWDFKKKV  526 (910)
T ss_pred             cceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCC--ceEEEccCcceEEEEecCCcc
Confidence                                        0001111122   3577788888776665  889999999999999999999


Q ss_pred             eeeeeecCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCC
Q 014475          211 LLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSED  289 (424)
Q Consensus       211 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~d  289 (424)
                      ++..+.....+.++..+.....++++..|-.|+++|..+.         +.+..+.+|.+.|++++||| |++|++++.|
T Consensus       527 l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~---------kvvR~f~gh~nritd~~FS~DgrWlisasmD  597 (910)
T KOG1539|consen  527 LKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTR---------KVVREFWGHGNRITDMTFSPDGRWLISASMD  597 (910)
T ss_pred             eeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhh---------hhhHHhhccccceeeeEeCCCCcEEEEeecC
Confidence            9999999999999999999999999999999999999986         67888999999999999999 9999999999


Q ss_pred             CcEEEEeCCCCcEEEEEeccCCCeeEEEEEecCceeeeccCC-CceeeccCC
Q 014475          290 GMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSFS-NPHTSSRRH  340 (424)
Q Consensus       290 g~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~d-~~i~iw~~~  340 (424)
                      ++|++||+.++.++-.+. -..+.+++.|+|+|.+||++..| .-|++|.-.
T Consensus       598 ~tIr~wDlpt~~lID~~~-vd~~~~sls~SPngD~LAT~Hvd~~gIylWsNk  648 (910)
T KOG1539|consen  598 STIRTWDLPTGTLIDGLL-VDSPCTSLSFSPNGDFLATVHVDQNGIYLWSNK  648 (910)
T ss_pred             CcEEEEeccCcceeeeEe-cCCcceeeEECCCCCEEEEEEecCceEEEEEch
Confidence            999999999999999886 46899999999999999999998 569999644

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.98  E-value=3e-30  Score=236.83  Aligned_cols=271  Identities=23%  Similarity=0.410  Sum_probs=231.7

Q ss_pred             EEEeecCCCCCceEEEeCCCCceEEE-eeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCceeee-ecCC
Q 014475            3 LLIASSSVADTGIGCWDLESGAEQLR-YKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVK-SLPA   80 (424)
Q Consensus         3 ~~lat~~~~dg~i~vwd~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~-~~~~   80 (424)
                      .++++++ .|++|++||..++..+.. +.+|.   .+|.+++  +..-+..+++++.| .++++||..++++... ..|.
T Consensus       219 ~~~~~~s-~~~tl~~~~~~~~~~i~~~l~GH~---g~V~~l~--~~~~~~~lvsgS~D-~t~rvWd~~sg~C~~~l~gh~  291 (537)
T KOG0274|consen  219 GFFKSGS-DDSTLHLWDLNNGYLILTRLVGHF---GGVWGLA--FPSGGDKLVSGSTD-KTERVWDCSTGECTHSLQGHT  291 (537)
T ss_pred             CeEEecC-CCceeEEeecccceEEEeeccCCC---CCceeEE--EecCCCEEEEEecC-CcEEeEecCCCcEEEEecCCC
Confidence            4678899 999999999999998877 66554   6677777  77767888888887 9999999999987754 4589


Q ss_pred             CCeeEEEECCCCCEEEEecCCCcEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcc
Q 014475           81 EPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECES  160 (424)
Q Consensus        81 ~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~  160 (424)
                      +.|.++...  +..+++|+.|.+|++|+++++..+..+.+|.++|.++..+  +.++++|+.||+|++||+.        
T Consensus       292 stv~~~~~~--~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~--------  359 (537)
T KOG0274|consen  292 SSVRCLTID--PFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPR--------  359 (537)
T ss_pred             ceEEEEEcc--CceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec--CCEEEEEecCceEEEEEhh--------
Confidence            999998875  4578889999999999999999999999999999999998  7899999999999999995        


Q ss_pred             cccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCC-ceeeeee-cCcceeEEEECCCCCEEEEEeC
Q 014475          161 QRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKG-RLLRNIV-FPSVIDAIALDPAEHVFYAGSR  238 (424)
Q Consensus       161 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~-~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~  238 (424)
                         ...+++.+.+|...|.++.+...   ..+++|+.|++|++||+++. +++..+. |...+..  +...+++|++++.
T Consensus       360 ---~~~cl~sl~gH~~~V~sl~~~~~---~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~--l~~~~~~Lvs~~a  431 (537)
T KOG0274|consen  360 ---TGKCLKSLSGHTGRVYSLIVDSE---NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSS--LLLRDNFLVSSSA  431 (537)
T ss_pred             ---hceeeeeecCCcceEEEEEecCc---ceEEeeeeccceEeecCCchhhhhhhhcCCcccccc--cccccceeEeccc
Confidence               46688999999999999987664   68999999999999999999 8888888 4444533  3447889999999


Q ss_pred             CCcEEEEEcCCCCCCCCCcCceeeeeecc-cCcCeEEEEecCCCEEEEeCCCCcEEEEeCCCCcEEEEEeccC
Q 014475          239 DGSIYIAALNAESPSTSSYGMHIIGSLSD-HSKAVTCLAYSTGDLLISGSEDGMVRVWDPITHNIVRMFRLAK  310 (424)
Q Consensus       239 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~  310 (424)
                      |+.|++||..++         .++..+.+ |...|.++++. ...+++++.||.+++||++++++.+.+-.+.
T Consensus       432 D~~Ik~WD~~~~---------~~~~~~~~~~~~~v~~l~~~-~~~il~s~~~~~~~l~dl~~~~~~~~l~~~~  494 (537)
T KOG0274|consen  432 DGTIKLWDAEEG---------ECLRTLEGRHVGGVSALALG-KEEILCSSDDGSVKLWDLRSGTLIRTLLSTD  494 (537)
T ss_pred             cccEEEeecccC---------ceeeeeccCCcccEEEeecC-cceEEEEecCCeeEEEecccCchhhhhhhcc
Confidence            999999999997         56667777 67888888875 5789999999999999999999988774333

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.98  E-value=6.3e-30  Score=214.83  Aligned_cols=282  Identities=16%  Similarity=0.172  Sum_probs=240.5

Q ss_pred             CCCceEEecceeecCCCccccCCCCceeEEEEECCCCcee-eeecCCCCeeEEEECCCCCEEEEecCCCcEEEEEccCcc
Q 014475           35 PPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVE-VKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGR  113 (424)
Q Consensus        35 ~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~  113 (424)
                      ...++.++.  ..|....++++|.| ..+.++|...++.. ...+|...|+.+.|+|+...+++++.|..|+||......
T Consensus       218 ~~pgi~ald--~~~s~~~ilTGG~d-~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s  294 (506)
T KOG0289|consen  218 STPGITALD--IIPSSSKILTGGED-KTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSS  294 (506)
T ss_pred             CCCCeeEEe--ecCCCCcceecCCC-CceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeecccccc
Confidence            445677777  77777888999997 99999999887765 556789999999999999999999999999999998888


Q ss_pred             eeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEE
Q 014475          114 LLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIV  193 (424)
Q Consensus       114 ~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~  193 (424)
                      .......|..+|+.+..+|.|.||++++.||+..+.|++++..         .....-....-.+++.+|+|+|  ..|.
T Consensus       295 ~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~---------lt~vs~~~s~v~~ts~~fHpDg--Lifg  363 (506)
T KOG0289|consen  295 EPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQ---------LTVVSDETSDVEYTSAAFHPDG--LIFG  363 (506)
T ss_pred             CccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcE---------EEEEeeccccceeEEeeEcCCc--eEEe
Confidence            8888899999999999999999999999999999999977432         2222222344568999999999  8999


Q ss_pred             EEeCCCcEEEEecCCCceeeeee-cCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeec-ccCcC
Q 014475          194 SASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLS-DHSKA  271 (424)
Q Consensus       194 ~~~~d~~v~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~-~~~~~  271 (424)
                      +|..|+.|++||+.++.....|. |.++|..++|+.+|-+|++++.|+.|++||+|...         ...++. ....+
T Consensus       364 tgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~---------n~kt~~l~~~~~  434 (506)
T KOG0289|consen  364 TGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLK---------NFKTIQLDEKKE  434 (506)
T ss_pred             ccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhc---------ccceeecccccc
Confidence            99999999999999999888888 89999999999999999999999999999999864         222222 22347


Q ss_pred             eEEEEecC-CCEEEEeCCCCcEEEEeCC--CCcEEEEEeccCCCeeEEEEEecCceeeeccCCCceeeccC
Q 014475          272 VTCLAYST-GDLLISGSEDGMVRVWDPI--THNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRR  339 (424)
Q Consensus       272 i~~~~~~~-~~~l~t~~~dg~i~iwd~~--~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~d~~i~iw~~  339 (424)
                      +.++.|.+ |.+|+.++.|=.|++++-.  +..++..+..|.+..+.+.|..+.++++++|.|..++++.+
T Consensus       435 v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~  505 (506)
T KOG0289|consen  435 VNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLYAL  505 (506)
T ss_pred             ceeEEEcCCCCeEEeecceeEEEEEecccccceeeehhhhcccccceeeecccceEEeeccchhheEEeec
Confidence            99999999 9999999888777776633  56788889999999999999999999999999999887754

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.98  E-value=9.1e-31  Score=230.37  Aligned_cols=289  Identities=14%  Similarity=0.204  Sum_probs=243.8

Q ss_pred             cCCCccccCCCCceeEEEEECCCCce-------eeeecCCCCeeEEEECCCCCEEEEecCCCcEEEEEccCc--ceeeee
Q 014475           48 ASSQLREQPSASSGSILYWSWSKPQV-------EVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASG--RLLKKW  118 (424)
Q Consensus        48 ~~~~~l~~~~~~~g~i~vwd~~~~~~-------~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~--~~~~~~  118 (424)
                      |.+++|.++|.| |.|++|+.....-       .....|.+.|+.+....+++.|++++.|-+|++|+...+  -+..++
T Consensus        35 ~~~ryLfTgGRD-g~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~sti  113 (735)
T KOG0308|consen   35 PNGRYLFTGGRD-GIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTI  113 (735)
T ss_pred             CCCceEEecCCC-ceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhhh
Confidence            567789999998 9999999874322       122457889999999999999999999999999999887  577888


Q ss_pred             ccccCCeEEEEE-ccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeec-CCcCceeEEEEEEcCceeEEEEEe
Q 014475          119 HAHYRAVTCLVF-SEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFT-GHTLRITDIVIGYGGVSATIVSAS  196 (424)
Q Consensus       119 ~~~~~~i~~~~~-~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~l~~~~  196 (424)
                      ..|...|.|++. -++...+++|+-|+.|.+||++++....... ........+. ++..+|.+++.++.+  ..+++|+
T Consensus       114 r~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s-~n~~t~~sl~sG~k~siYSLA~N~t~--t~ivsGg  190 (735)
T KOG0308|consen  114 RTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVAS-FNNVTVNSLGSGPKDSIYSLAMNQTG--TIIVSGG  190 (735)
T ss_pred             hcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhh-ccccccccCCCCCccceeeeecCCcc--eEEEecC
Confidence            999999999999 7788899999999999999999864421111 1222233334 899999999999988  8999999


Q ss_pred             CCCcEEEEecCCCceeeeee-cCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEE
Q 014475          197 EDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCL  275 (424)
Q Consensus       197 ~d~~v~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  275 (424)
                      ..+.+++||.++++.+..+. |...|.++..+++|..+++++.||+|++||+...         +++.++..|...|.++
T Consensus       191 tek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQ---------rCl~T~~vH~e~VWaL  261 (735)
T KOG0308|consen  191 TEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQ---------RCLATYIVHKEGVWAL  261 (735)
T ss_pred             cccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeecccc---------ceeeeEEeccCceEEE
Confidence            99999999999998888887 9999999999999999999999999999999987         7888999999999999


Q ss_pred             EecC-CCEEEEeCCCCcEEEEeCCCCcEEEEEeccCCCeeEEEEEecCceeeeccCCCceeeccCCCCCCCCCcc
Q 014475          276 AYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGSQLPPPLD  349 (424)
Q Consensus       276 ~~~~-~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~  349 (424)
                      ..+| -..+++|+.||.|..=|+++......+.....||..+..+.+.+-+-+++.|+.|+-|.....-...+.+
T Consensus       262 ~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tlick~daPv~~l~~~~~~~~~WvtTtds~I~rW~~~~~~~l~~s~  336 (735)
T KOG0308|consen  262 QSSPSFTHVYSGGRDGNIYRTDLRNPAKSTLICKEDAPVLKLHLHEHDNSVWVTTTDSSIKRWKLEPDIALSVSG  336 (735)
T ss_pred             eeCCCcceEEecCCCCcEEecccCCchhheEeecCCCchhhhhhccccCCceeeeccccceecCCccccccccCC
Confidence            9999 8899999999999999999965555555577899999998766666788899999999987554433333

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.97  E-value=6.5e-31  Score=224.69  Aligned_cols=277  Identities=19%  Similarity=0.277  Sum_probs=238.8

Q ss_pred             CCCceEEecceeecCCCccccCCCCceeEEEEECCCCceeeee------cCCCCeeEEEECCCCCEEEEecCCCcEEEEE
Q 014475           35 PPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKS------LPAEPIKPIAANSHGTYIAGGGQSGDIYMWE  108 (424)
Q Consensus        35 ~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~~------~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd  108 (424)
                      |..-|.++.  .+...+.+.++|.  |.|+|||+....-....      ....-|+++...|||+.|++|++-.++.|||
T Consensus       418 HGEvVcAvt--IS~~trhVyTgGk--gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWD  493 (705)
T KOG0639|consen  418 HGEVVCAVT--ISNPTRHVYTGGK--GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWD  493 (705)
T ss_pred             cCcEEEEEE--ecCCcceeEecCC--CeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeee
Confidence            434466666  8889999999998  89999999765322111      1356799999999999999999999999999


Q ss_pred             ccCccee--eeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEc
Q 014475          109 VASGRLL--KKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYG  186 (424)
Q Consensus       109 ~~~~~~~--~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  186 (424)
                      +......  ..+....-....++.+||.+..+++..||.|.|||+.           ....+..+++|...+.||.++++
T Consensus       494 LAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLh-----------nq~~VrqfqGhtDGascIdis~d  562 (705)
T KOG0639|consen  494 LAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLH-----------NQTLVRQFQGHTDGASCIDISKD  562 (705)
T ss_pred             ccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcc-----------cceeeecccCCCCCceeEEecCC
Confidence            9766443  3444444567789999999999999999999999994           46678999999999999999999


Q ss_pred             CceeEEEEEeCCCcEEEEecCCCceeeeeecCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeec
Q 014475          187 GVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLS  266 (424)
Q Consensus       187 ~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~  266 (424)
                      |  ..|.+|+-|++|+.||+++++.+....+...|.++..+|.+.++++|-.++.+.+.......          ...+.
T Consensus       563 G--tklWTGGlDntvRcWDlregrqlqqhdF~SQIfSLg~cP~~dWlavGMens~vevlh~skp~----------kyqlh  630 (705)
T KOG0639|consen  563 G--TKLWTGGLDNTVRCWDLREGRQLQQHDFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPE----------KYQLH  630 (705)
T ss_pred             C--ceeecCCCccceeehhhhhhhhhhhhhhhhhheecccCCCccceeeecccCcEEEEecCCcc----------ceeec
Confidence            9  89999999999999999999999988899999999999999999999999999998887643          34566


Q ss_pred             ccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCCCcEEEEEeccCCCeeEEEEEecCceeeeccCCCceeeccC
Q 014475          267 DHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRR  339 (424)
Q Consensus       267 ~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~d~~i~iw~~  339 (424)
                      -|+.-|.++.|.+ |+++++.+.|+.+..|...-|..+...+ ...+|.++.++.|.++|++|+.|+...+|.+
T Consensus       631 lheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqsk-E~SsVlsCDIS~ddkyIVTGSGdkkATVYeV  703 (705)
T KOG0639|consen  631 LHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK-ESSSVLSCDISFDDKYIVTGSGDKKATVYEV  703 (705)
T ss_pred             ccccEEEEEEecccCceeeecCchhhhhhccCccccceeecc-ccCcceeeeeccCceEEEecCCCcceEEEEE
Confidence            7899999999999 9999999999999999999998888776 5679999999999999999999988877754

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=1.5e-30  Score=210.51  Aligned_cols=273  Identities=22%  Similarity=0.296  Sum_probs=233.8

Q ss_pred             EEEeecCCCCCceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEEC------CCCc----
Q 014475            3 LLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSW------SKPQ----   72 (424)
Q Consensus         3 ~~lat~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~------~~~~----   72 (424)
                      .++.+++ .|.+-+||.+++|+++.++.+|.   +.|.+++  |++.+.++++++.| ++-+||..      ..+.    
T Consensus       161 pi~gtAS-ADhTA~iWs~Esg~CL~~Y~GH~---GSVNsik--fh~s~~L~lTaSGD-~taHIW~~av~~~vP~~~a~~~  233 (481)
T KOG0300|consen  161 PICGTAS-ADHTARIWSLESGACLATYTGHT---GSVNSIK--FHNSGLLLLTASGD-ETAHIWKAAVNWEVPSNNAPSD  233 (481)
T ss_pred             cceeecc-cccceeEEeeccccceeeecccc---cceeeEE--eccccceEEEccCC-cchHHHHHhhcCcCCCCCCCCC
Confidence            3678999 99999999999999999998765   5577777  99999999999998 99999972      1100    


Q ss_pred             -------------------------------eeeeecCCCCeeEEEECCCCCEEEEecCCCcEEEEEccCcceeeeeccc
Q 014475           73 -------------------------------VEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAH  121 (424)
Q Consensus        73 -------------------------------~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~  121 (424)
                                                     ......|...|.+..|-..|+.+++++.|.+-.+||+++++.+..+.+|
T Consensus       234 hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGH  313 (481)
T KOG0300|consen  234 HSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGH  313 (481)
T ss_pred             CCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccCceeccccCc
Confidence                                           0112346778999999999999999999999999999999999999999


Q ss_pred             cCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcE
Q 014475          122 YRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTC  201 (424)
Q Consensus       122 ~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v  201 (424)
                      ....+.++-+|..+++++++.|.+.++||++.          ....+..+++|...|++..|..+   ..+++|+.|.+|
T Consensus       314 d~ELtHcstHptQrLVvTsSrDtTFRLWDFRe----------aI~sV~VFQGHtdtVTS~vF~~d---d~vVSgSDDrTv  380 (481)
T KOG0300|consen  314 DSELTHCSTHPTQRLVVTSSRDTTFRLWDFRE----------AIQSVAVFQGHTDTVTSVVFNTD---DRVVSGSDDRTV  380 (481)
T ss_pred             chhccccccCCcceEEEEeccCceeEeccchh----------hcceeeeecccccceeEEEEecC---CceeecCCCceE
Confidence            99999999999999999999999999999963          34567789999999999999987   589999999999


Q ss_pred             EEEecCCC-ceeeeeecCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-
Q 014475          202 KVWSLLKG-RLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-  279 (424)
Q Consensus       202 ~iwd~~~~-~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-  279 (424)
                      ++||+++. .++..+....+++.++.+..+..++.-..+..|++||++......     -+...-++|..-|+|++|.. 
T Consensus       381 KvWdLrNMRsplATIRtdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaR-----lPrtsRqgHrRMV~c~AW~ee  455 (481)
T KOG0300|consen  381 KVWDLRNMRSPLATIRTDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLAR-----LPRTSRQGHRRMVTCCAWLEE  455 (481)
T ss_pred             EEeeeccccCcceeeecCCccceeEeecCCceEEeccCCceEEEEecCCCcccc-----CCcccccccceeeeeeecccc
Confidence            99999975 467788899999999999999999999999999999998865322     12234568999999999975 


Q ss_pred             --CCEEEEeCCCCcEEEEeCCCC
Q 014475          280 --GDLLISGSEDGMVRVWDPITH  300 (424)
Q Consensus       280 --~~~l~t~~~dg~i~iwd~~~~  300 (424)
                        -.-|++++.|..+.=|.+...
T Consensus       456 hp~cnLftcGFDR~v~gW~in~p  478 (481)
T KOG0300|consen  456 HPACNLFTCGFDRMVAGWKINTP  478 (481)
T ss_pred             CcccccccccccceeeeeEeccc
Confidence              456889999999999998754

>PTZ00421 coronin; Provisional

Probab=99.97  E-value=1.7e-29  Score=231.79  Aligned_cols=250  Identities=16%  Similarity=0.201  Sum_probs=192.7

Q ss_pred             CCeeEEEECCCCCEEEEecCCCcEEEEEccCc----------cee---eeeccccCCeEEEEEcc-CCcEEEEeeCCCcE
Q 014475           81 EPIKPIAANSHGTYIAGGGQSGDIYMWEVASG----------RLL---KKWHAHYRAVTCLVFSE-DGSFLISGSEDGCV  146 (424)
Q Consensus        81 ~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~----------~~~---~~~~~~~~~i~~~~~~~-~~~~l~s~~~dg~i  146 (424)
                      ..|.....++++..+++++.+.....|+...+          +..   ..+.+|.+.|.+++|+| ++++|++|+.|+.|
T Consensus        21 ~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtI  100 (493)
T PTZ00421         21 LNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDGTI  100 (493)
T ss_pred             eccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEE
Confidence            44555566667655666666665666654333          211   23678999999999999 88999999999999


Q ss_pred             EEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeee-cCcceeEEE
Q 014475          147 RIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIA  225 (424)
Q Consensus       147 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~-~~~~i~~~~  225 (424)
                      ++||+.+....    ......+..+.+|...|.+++|+|.+. ++|++++.|++|++||+++++....+. |...|.+++
T Consensus       101 kIWdi~~~~~~----~~~~~~l~~L~gH~~~V~~l~f~P~~~-~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla  175 (493)
T PTZ00421        101 MGWGIPEEGLT----QNISDPIVHLQGHTKKVGIVSFHPSAM-NVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLE  175 (493)
T ss_pred             EEEecCCCccc----cccCcceEEecCCCCcEEEEEeCcCCC-CEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEE
Confidence            99999653210    011234667889999999999999753 689999999999999999998888877 788999999


Q ss_pred             ECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcC-eEEEEecC-CCEEEEeC----CCCcEEEEeCCC
Q 014475          226 LDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKA-VTCLAYST-GDLLISGS----EDGMVRVWDPIT  299 (424)
Q Consensus       226 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~-i~~~~~~~-~~~l~t~~----~dg~i~iwd~~~  299 (424)
                      |+|++.+|++++.|+.|++||++++         ..+..+.+|... +..+.|.+ +..+++++    .|+.|++||+++
T Consensus       176 ~spdG~lLatgs~Dg~IrIwD~rsg---------~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~  246 (493)
T PTZ00421        176 WNLDGSLLCTTSKDKKLNIIDPRDG---------TIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRK  246 (493)
T ss_pred             EECCCCEEEEecCCCEEEEEECCCC---------cEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCC
Confidence            9999999999999999999999986         456667778764 44677888 66676654    479999999987


Q ss_pred             Cc-EEEEEeccC-CCeeEEEEEecCceeeecc-CCCceeeccCCCCCC
Q 014475          300 HN-IVRMFRLAK-GPVNNILVVRRPLYLNLGS-FSNPHTSSRRHGSQL  344 (424)
Q Consensus       300 ~~-~~~~~~~~~-~~v~~l~~s~~~~~l~~~~-~d~~i~iw~~~~~~~  344 (424)
                      .. ++.....+. ..+....|++++.+|++++ .|+.|++|++..+++
T Consensus       247 ~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~  294 (493)
T PTZ00421        247 MASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERL  294 (493)
T ss_pred             CCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCce
Confidence            54 444444333 3556677899999998887 599999999987664

>PTZ00420 coronin; Provisional

Probab=99.97  E-value=3e-29  Score=231.01  Aligned_cols=233  Identities=15%  Similarity=0.181  Sum_probs=186.0

Q ss_pred             ecCCCcEEEEEccCcceeeeeccccCCeEEEEEccC-CcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcC
Q 014475           98 GGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSED-GSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTL  176 (424)
Q Consensus        98 ~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (424)
                      |+.++.|++|+......+..+.+|.+.|.+++|+|+ +++|++|+.||.|++||+.+......   ....++..+.+|..
T Consensus        50 GG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~---~i~~p~~~L~gH~~  126 (568)
T PTZ00420         50 GGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVK---EIKDPQCILKGHKK  126 (568)
T ss_pred             CCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCcccc---ccccceEEeecCCC
Confidence            667889999998887888889999999999999996 78999999999999999975321100   00123456788999


Q ss_pred             ceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeeecCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCC
Q 014475          177 RITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSS  256 (424)
Q Consensus       177 ~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~  256 (424)
                      .|.+++|+|++. ..+++++.|++|++||+++++....+.+...|.+++|+|+|.+|++++.|+.|++||++++      
T Consensus       127 ~V~sVaf~P~g~-~iLaSgS~DgtIrIWDl~tg~~~~~i~~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg------  199 (568)
T PTZ00420        127 KISIIDWNPMNY-YIMCSSGFDSFVNIWDIENEKRAFQINMPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQ------  199 (568)
T ss_pred             cEEEEEECCCCC-eEEEEEeCCCeEEEEECCCCcEEEEEecCCcEEEEEECCCCCEEEEEecCCEEEEEECCCC------
Confidence            999999999873 4567999999999999999988877778889999999999999999999999999999986      


Q ss_pred             cCceeeeeecccCcCeEEE-----EecC-CCEEEEeCCCC----cEEEEeCCC-CcEEEEEeccC--CCeeEEEEEecCc
Q 014475          257 YGMHIIGSLSDHSKAVTCL-----AYST-GDLLISGSEDG----MVRVWDPIT-HNIVRMFRLAK--GPVNNILVVRRPL  323 (424)
Q Consensus       257 ~~~~~~~~~~~~~~~i~~~-----~~~~-~~~l~t~~~dg----~i~iwd~~~-~~~~~~~~~~~--~~v~~l~~s~~~~  323 (424)
                         ..+..+.+|.+.+.+.     .|++ +.+|++++.|+    .|+|||+++ ++++..+..+.  +.+......+++.
T Consensus       200 ---~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~  276 (568)
T PTZ00420        200 ---EIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGL  276 (568)
T ss_pred             ---cEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCC
Confidence               4566788888765433     3446 78888877664    799999995 56666654332  3333344445688


Q ss_pred             eeeeccCCCceeeccCCCCC
Q 014475          324 YLNLGSFSNPHTSSRRHGSQ  343 (424)
Q Consensus       324 ~l~~~~~d~~i~iw~~~~~~  343 (424)
                      ++++|+.|+.|++|++..+.
T Consensus       277 l~lsGkGD~tIr~~e~~~~~  296 (568)
T PTZ00420        277 IYLIGKGDGNCRYYQHSLGS  296 (568)
T ss_pred             EEEEEECCCeEEEEEccCCc
Confidence            99999999999999997653

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=1e-30  Score=203.74  Aligned_cols=252  Identities=18%  Similarity=0.208  Sum_probs=209.5

Q ss_pred             eeecCCCCeeEEEECCCCCEEEEecCCCcEEEEEccCc---ceeeeeccccCCeEEEEEcc--CCcEEEEeeCCCcEEEE
Q 014475           75 VKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASG---RLLKKWHAHYRAVTCLVFSE--DGSFLISGSEDGCVRIW  149 (424)
Q Consensus        75 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~---~~~~~~~~~~~~i~~~~~~~--~~~~l~s~~~dg~i~iw  149 (424)
                      +...|.+.|..+...--|+.||+++.|++|+|+..++.   +.+.++.+|.++|..++|..  -|.+|++++.||.|.||
T Consensus         6 idt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiW   85 (299)
T KOG1332|consen    6 IDTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIW   85 (299)
T ss_pred             hhhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEE
Confidence            34567788888887778999999999999999999765   46788999999999999965  79999999999999999


Q ss_pred             eCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCC--ceeeee--ecCcceeEEE
Q 014475          150 SLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKG--RLLRNI--VFPSVIDAIA  225 (424)
Q Consensus       150 d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~--~~~~~~--~~~~~i~~~~  225 (424)
                      .-++         ...........|...|++++|.|.+.+-.|++++.||.|.+.+.+..  -....+  .|+-.+++++
T Consensus        86 ke~~---------g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVs  156 (299)
T KOG1332|consen   86 KEEN---------GRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVS  156 (299)
T ss_pred             ecCC---------CchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceee
Confidence            9866         33445566788999999999999988899999999999999998754  122222  3888999999


Q ss_pred             ECCC---C-----------CEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-----CCEEEEe
Q 014475          226 LDPA---E-----------HVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-----GDLLISG  286 (424)
Q Consensus       226 ~~~~---~-----------~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-----~~~l~t~  286 (424)
                      |.|.   |           +.|++|+.|..|+||+.....       +..-..+.+|...|+.++|.|     ...|+++
T Consensus       157 wapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~-------w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~  229 (299)
T KOG1332|consen  157 WAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDS-------WKLERTLEGHKDWVRDVAWAPSVGLPKSTIASC  229 (299)
T ss_pred             ecCcCCCccccccCcccccceeeccCCccceeeeecCCcc-------hhhhhhhhhcchhhhhhhhccccCCCceeeEEe
Confidence            9985   4           569999999999999999864       455556999999999999999     3589999


Q ss_pred             CCCCcEEEEeCCCC-c--EEEEEeccCCCeeEEEEEecCceeeeccCCCceeeccCCCC
Q 014475          287 SEDGMVRVWDPITH-N--IVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGS  342 (424)
Q Consensus       287 ~~dg~i~iwd~~~~-~--~~~~~~~~~~~v~~l~~s~~~~~l~~~~~d~~i~iw~~~~~  342 (424)
                      +.||++.||..+.. +  ....+.....++..+.||..|..|++++.|+.+.+|.-+..
T Consensus       230 SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~~~  288 (299)
T KOG1332|consen  230 SQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKENVD  288 (299)
T ss_pred             cCCCcEEEEEecCccCcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEEeCCC
Confidence            99999999987622 1  12223345678999999999999999999999999986643

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=1.5e-29  Score=229.66  Aligned_cols=239  Identities=18%  Similarity=0.310  Sum_probs=195.4

Q ss_pred             CCCCceEEecceeecCCCccccCCCCceeEEEEECCC--------------------------------Cc---------
Q 014475           34 SPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSK--------------------------------PQ---------   72 (424)
Q Consensus        34 ~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~--------------------------------~~---------   72 (424)
                      .|.++|.++.  |++||++||+||.| +.|+||.+..                                ..         
T Consensus       265 ah~gaIw~mK--FS~DGKyLAsaGeD-~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~  341 (712)
T KOG0283|consen  265 AHKGAIWAMK--FSHDGKYLASAGED-GVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRK  341 (712)
T ss_pred             ccCCcEEEEE--eCCCCceeeecCCC-ceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccccccc
Confidence            6778999999  99999999999998 9999998755                                00         


Q ss_pred             --------------------eeeeecCCCCeeEEEECCCCCEEEEecCCCcEEEEEccCcceeeeeccccCCeEEEEEcc
Q 014475           73 --------------------VEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSE  132 (424)
Q Consensus        73 --------------------~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~  132 (424)
                                          +....+|.+.|..+.||.++ +|++++.|.+|++|++...+++..|. |...|+|++|+|
T Consensus       342 ~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~-fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaFnP  419 (712)
T KOG0283|consen  342 GSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN-FLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAFNP  419 (712)
T ss_pred             ccCCccccCCCccccccccchhhhhccchhheecccccCC-eeEeccccccEEeecCCCcceeeEEe-cCCeeEEEEecc
Confidence                                00011367789999999764 78999999999999999999999997 999999999999


Q ss_pred             -CCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCce
Q 014475          133 -DGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRL  211 (424)
Q Consensus       133 -~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~  211 (424)
                       |.++|++|+-||.++||++..           . .+..+..-..-|+++++.|+|  +..+.|+.+|.+++|+....+.
T Consensus       420 vDDryFiSGSLD~KvRiWsI~d-----------~-~Vv~W~Dl~~lITAvcy~PdG--k~avIGt~~G~C~fY~t~~lk~  485 (712)
T KOG0283|consen  420 VDDRYFISGSLDGKVRLWSISD-----------K-KVVDWNDLRDLITAVCYSPDG--KGAVIGTFNGYCRFYDTEGLKL  485 (712)
T ss_pred             cCCCcEeecccccceEEeecCc-----------C-eeEeehhhhhhheeEEeccCC--ceEEEEEeccEEEEEEccCCeE
Confidence             889999999999999999943           2 234455556899999999998  8999999999999999987776


Q ss_pred             eeeee---c------CcceeEEEECCC-CCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCc--CeEEEEecC
Q 014475          212 LRNIV---F------PSVIDAIALDPA-EHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSK--AVTCLAYST  279 (424)
Q Consensus       212 ~~~~~---~------~~~i~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~--~i~~~~~~~  279 (424)
                      .....   +      ...|+.+++.|. ...+++.+.|..|+|||.+..         .++..++++..  .-....|+.
T Consensus       486 ~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~---------~lv~KfKG~~n~~SQ~~Asfs~  556 (712)
T KOG0283|consen  486 VSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDK---------DLVHKFKGFRNTSSQISASFSS  556 (712)
T ss_pred             EEeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccch---------hhhhhhcccccCCcceeeeEcc
Confidence            65543   1      237999999984 446888999999999999876         44555655432  223456777


Q ss_pred             -CCEEEEeCCCCcEEEEeCCCC
Q 014475          280 -GDLLISGSEDGMVRVWDPITH  300 (424)
Q Consensus       280 -~~~l~t~~~dg~i~iwd~~~~  300 (424)
                       |++|+++++|..|++|+....
T Consensus       557 Dgk~IVs~seDs~VYiW~~~~~  578 (712)
T KOG0283|consen  557 DGKHIVSASEDSWVYIWKNDSF  578 (712)
T ss_pred             CCCEEEEeecCceEEEEeCCCC
Confidence             999999999999999998543

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=1.7e-28  Score=198.24  Aligned_cols=267  Identities=18%  Similarity=0.265  Sum_probs=213.3

Q ss_pred             EEEeecCCCCCceEEEeCCCCc------e---EEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCce
Q 014475            3 LLIASSSVADTGIGCWDLESGA------E---QLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQV   73 (424)
Q Consensus         3 ~~lat~~~~dg~i~vwd~~~~~------~---~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~   73 (424)
                      ..+++|+ ....|.=+++.-..      +   +..+-.+..|...+++++    -++.++|+++.| -+|+|||+.+...
T Consensus         2 m~iIvGt-YE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavA----Vs~~~~aSGssD-etI~IYDm~k~~q   75 (362)
T KOG0294|consen    2 MEIIVGT-YEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALA----VSGPYVASGSSD-ETIHIYDMRKRKQ   75 (362)
T ss_pred             eeEEEee-eeeEEEEEEeccCccccccccceeeeccccccccccceeEEE----ecceeEeccCCC-CcEEEEeccchhh
Confidence            4466777 56666656554222      1   112234566778899877    689999999998 9999999987654


Q ss_pred             e-eeecCCCCeeEEEECCCCC--EEEEecCCCcEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEe
Q 014475           74 E-VKSLPAEPIKPIAANSHGT--YIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWS  150 (424)
Q Consensus        74 ~-~~~~~~~~v~~~~~s~~~~--~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd  150 (424)
                      . ....|.+.|+++.|.+.-.  .|++|+.||.|.+|+....+++..+++|.+.|+.++.+|.+++-++.+.|+.+++||
T Consensus        76 lg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WN  155 (362)
T KOG0294|consen   76 LGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWN  155 (362)
T ss_pred             hcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeeh
Confidence            4 5566899999999998764  899999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeeecCcceeEEEECCCC
Q 014475          151 LLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAE  230 (424)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~i~~~~~~~~~  230 (424)
                      +-++.         ...+..+. +  ..+.+.|+|.|  .+++.+..+ .|-+|.+.+......+..+..+.++.|. ++
T Consensus       156 LV~Gr---------~a~v~~L~-~--~at~v~w~~~G--d~F~v~~~~-~i~i~q~d~A~v~~~i~~~~r~l~~~~l-~~  219 (362)
T KOG0294|consen  156 LVRGR---------VAFVLNLK-N--KATLVSWSPQG--DHFVVSGRN-KIDIYQLDNASVFREIENPKRILCATFL-DG  219 (362)
T ss_pred             hhcCc---------cceeeccC-C--cceeeEEcCCC--CEEEEEecc-EEEEEecccHhHhhhhhccccceeeeec-CC
Confidence            96632         22222222 1  22338899888  777777765 5999999988888888777777777765 56


Q ss_pred             CEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEe--cC-CCEEEEeCCCCcEEEEeCCCC
Q 014475          231 HVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAY--ST-GDLLISGSEDGMVRVWDPITH  300 (424)
Q Consensus       231 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~-~~~l~t~~~dg~i~iwd~~~~  300 (424)
                      ..+++|..|+.|.+||.+..         .+...+.+|...|..+.+  .| +.+|+|++.||.|++||++..
T Consensus       220 ~~L~vG~d~~~i~~~D~ds~---------~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~  283 (362)
T KOG0294|consen  220 SELLVGGDNEWISLKDTDSD---------TPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDME  283 (362)
T ss_pred             ceEEEecCCceEEEeccCCC---------ccceeeecchhheeeeEEEecCCceEEEEeccCceEEEEEcccc
Confidence            78999999999999999985         567788999999999985  33 789999999999999999865

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.97  E-value=1.1e-27  Score=205.21  Aligned_cols=309  Identities=15%  Similarity=0.288  Sum_probs=243.7

Q ss_pred             CCCceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCceeeee-----cCCCCeeE
Q 014475           11 ADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKS-----LPAEPIKP   85 (424)
Q Consensus        11 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~~-----~~~~~v~~   85 (424)
                      .+-.+.|||...+......+..   ...|....  |+|....+++.... |.+.+|+.+++....+.     .....|.|
T Consensus       178 ~~h~lSVWdWqk~~~~~~vk~s---ne~v~~a~--FHPtd~nliit~Gk-~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~  251 (626)
T KOG2106|consen  178 NPHMLSVWDWQKKAKLGPVKTS---NEVVFLAT--FHPTDPNLIITCGK-GHLYFWTLRGGSLVKRQGIFEKREKKFVLC  251 (626)
T ss_pred             CccccchhhchhhhccCcceec---cceEEEEE--eccCCCcEEEEeCC-ceEEEEEccCCceEEEeeccccccceEEEE
Confidence            5566889999888777655543   34566666  99988777766665 99999999887654332     23578999


Q ss_pred             EEECCCCCEEEEecCCCcEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhccc--c-
Q 014475           86 IAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQ--R-  162 (424)
Q Consensus        86 ~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~--~-  162 (424)
                      ++|.++|. +++|..+|.|.||+..+.+..+....|.+.|.+++...+|. |++|+.|..|..||- ......+.+  . 
T Consensus       252 v~F~engd-viTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~Gt-llSGgKDRki~~Wd~-~y~k~r~~elPe~  328 (626)
T KOG2106|consen  252 VTFLENGD-VITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGT-LLSGGKDRKIILWDD-NYRKLRETELPEQ  328 (626)
T ss_pred             EEEcCCCC-EEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCcc-EeecCccceEEeccc-cccccccccCchh
Confidence            99999997 78899999999999988777777779999999999998886 556999999999992 211111100  0 


Q ss_pred             ---------------------------cccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeee
Q 014475          163 ---------------------------ASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNI  215 (424)
Q Consensus       163 ---------------------------~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~  215 (424)
                                                 ..........+|......++.+|+.  +.+++++.|+.+++|+  ..++....
T Consensus       329 ~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~--~q~~T~gqdk~v~lW~--~~k~~wt~  404 (626)
T KOG2106|consen  329 FGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSK--NQLLTCGQDKHVRLWN--DHKLEWTK  404 (626)
T ss_pred             cCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCCh--hheeeccCcceEEEcc--CCceeEEE
Confidence                                       0111123346788888999999988  8999999999999999  67777777


Q ss_pred             ecCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEE
Q 014475          216 VFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRV  294 (424)
Q Consensus       216 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~i  294 (424)
                      ....+..++.|+|.| .+++|+..|...+.|..+.         ..+..... ..++++++|+| |.+||.|+.|+.|+|
T Consensus       405 ~~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~---------~lv~~~~d-~~~ls~v~ysp~G~~lAvgs~d~~iyi  473 (626)
T KOG2106|consen  405 IIEDPAECADFHPSG-VVAVGTATGRWFVLDTETQ---------DLVTIHTD-NEQLSVVRYSPDGAFLAVGSHDNHIYI  473 (626)
T ss_pred             EecCceeEeeccCcc-eEEEeeccceEEEEecccc---------eeEEEEec-CCceEEEEEcCCCCEEEEecCCCeEEE
Confidence            788999999999999 9999999999999999985         33444434 88999999999 999999999999999


Q ss_pred             EeCCCC-cEEEEEe-ccCCCeeEEEEEecCceeeeccCCCceeeccCCCCC
Q 014475          295 WDPITH-NIVRMFR-LAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGSQ  343 (424)
Q Consensus       295 wd~~~~-~~~~~~~-~~~~~v~~l~~s~~~~~l~~~~~d~~i~iw~~~~~~  343 (424)
                      |.+... ....... .+..+|+.+.|++|+++|.+-+-|-.|..|.....+
T Consensus       474 y~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~~~  524 (626)
T KOG2106|consen  474 YRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWKPSECK  524 (626)
T ss_pred             EEECCCCcEEEEeeeecCceeEEeeecCCCceEEeccCceEEEEEccccCc
Confidence            998754 3333332 344799999999999999999999999999554433

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=2.1e-29  Score=203.89  Aligned_cols=259  Identities=22%  Similarity=0.363  Sum_probs=226.8

Q ss_pred             ecCCCCeeEEEECCCCCEEEEecCCCcEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeC-----
Q 014475           77 SLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSL-----  151 (424)
Q Consensus        77 ~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~-----  151 (424)
                      ..|.+.|..++.......+.+++.|.+-+||.++++.++..+.+|.+.|++++|++.+.++++++.|++..||..     
T Consensus       145 ~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~  224 (481)
T KOG0300|consen  145 EGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWE  224 (481)
T ss_pred             cccccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHHHHHhhcCc
Confidence            568999999999888889999999999999999999999999999999999999999999999999999999972     


Q ss_pred             -Ccc--------cchhc-------------ccc--cccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecC
Q 014475          152 -LTV--------FEECE-------------SQR--ASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLL  207 (424)
Q Consensus       152 -~~~--------~~~~~-------------~~~--~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~  207 (424)
                       ...        .++.+             ...  .-..++..+.+|...|.+..|...+  +.+++++.|.+..+||++
T Consensus       225 vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg--~Q~vTaSWDRTAnlwDVE  302 (481)
T KOG0300|consen  225 VPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGG--QQMVTASWDRTANLWDVE  302 (481)
T ss_pred             CCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCc--ceeeeeeccccceeeeec
Confidence             110        00000             000  1123566788999999999999888  899999999999999999


Q ss_pred             CCceeeeee-cCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecCCCEEEEe
Q 014475          208 KGRLLRNIV-FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTGDLLISG  286 (424)
Q Consensus       208 ~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~t~  286 (424)
                      +++++..+. |....+.++-+|..+++++.+.|.+.++||++...        +.+..+++|...|+++.|..+..+++|
T Consensus       303 tge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI--------~sV~VFQGHtdtVTS~vF~~dd~vVSg  374 (481)
T KOG0300|consen  303 TGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAI--------QSVAVFQGHTDTVTSVVFNTDDRVVSG  374 (481)
T ss_pred             cCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhc--------ceeeeecccccceeEEEEecCCceeec
Confidence            999999988 88999999999999999999999999999999764        678899999999999999889999999


Q ss_pred             CCCCcEEEEeCCCC-cEEEEEeccCCCeeEEEEEecCceeeeccCCCceeeccCCCCCCCC
Q 014475          287 SEDGMVRVWDPITH-NIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGSQLPP  346 (424)
Q Consensus       287 ~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~  346 (424)
                      +.|.+|++||+++. .++.+++ -..+++.++.+..+..|+.--++..|++||+++..+..
T Consensus       375 SDDrTvKvWdLrNMRsplATIR-tdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaR  434 (481)
T KOG0300|consen  375 SDDRTVKVWDLRNMRSPLATIR-TDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLAR  434 (481)
T ss_pred             CCCceEEEeeeccccCcceeee-cCCccceeEeecCCceEEeccCCceEEEEecCCCcccc
Confidence            99999999999875 5677777 56899999999988899999999999999999887643

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.97  E-value=1.9e-28  Score=197.64  Aligned_cols=253  Identities=19%  Similarity=0.203  Sum_probs=209.4

Q ss_pred             eeeecCCCCeeEEEECCCCCEEEEecCCCcEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCc
Q 014475           74 EVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLT  153 (424)
Q Consensus        74 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~  153 (424)
                      .+...+.+.|..+.|+|.++.|++++.||++++||....+....++ |..++.+++|.+ ...+++|+.||.|+.+|+++
T Consensus         7 ~l~npP~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~-~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~   84 (323)
T KOG1036|consen    7 ELENPPEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFK-HGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNT   84 (323)
T ss_pred             ccCCCChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhee-cCCceeeeeccC-CceEEEeccCceEEEEEecC
Confidence            3445567899999999999999999999999999998887666665 899999999986 56799999999999999976


Q ss_pred             ccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeeecCcceeEEEECCCCCEE
Q 014475          154 VFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVF  233 (424)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l  233 (424)
                      +.            ...+..|..+|.++...+..  ..+++|+.|++|++||.+.......+..+..|.++..  .++.|
T Consensus        85 ~~------------~~~igth~~~i~ci~~~~~~--~~vIsgsWD~~ik~wD~R~~~~~~~~d~~kkVy~~~v--~g~~L  148 (323)
T KOG1036|consen   85 GN------------EDQIGTHDEGIRCIEYSYEV--GCVISGSWDKTIKFWDPRNKVVVGTFDQGKKVYCMDV--SGNRL  148 (323)
T ss_pred             Cc------------ceeeccCCCceEEEEeeccC--CeEEEcccCccEEEEeccccccccccccCceEEEEec--cCCEE
Confidence            32            23467799999999999876  7999999999999999998766677766777777766  67889


Q ss_pred             EEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCCC----cEEEEEec
Q 014475          234 YAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITH----NIVRMFRL  308 (424)
Q Consensus       234 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~----~~~~~~~~  308 (424)
                      ++|+.+..+.+||+++.....       ...-..-...+.++++-| +.-++.++-||.|.+=.++..    +....|+.
T Consensus       149 vVg~~~r~v~iyDLRn~~~~~-------q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkC  221 (323)
T KOG1036|consen  149 VVGTSDRKVLIYDLRNLDEPF-------QRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKC  221 (323)
T ss_pred             EEeecCceEEEEEcccccchh-------hhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEe
Confidence            999999999999999875211       112223456789999999 778888999999988776665    44556777


Q ss_pred             cCC---------CeeEEEEEecCceeeeccCCCceeeccCCCCCCCCCcccc
Q 014475          309 AKG---------PVNNILVVRRPLYLNLGSFSNPHTSSRRHGSQLPPPLDKY  351 (424)
Q Consensus       309 ~~~---------~v~~l~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~  351 (424)
                      |..         ||++++|+|-...|+||+.||.|.+||....+....+.++
T Consensus       222 Hr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~  273 (323)
T KOG1036|consen  222 HRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKY  273 (323)
T ss_pred             eecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhccCC
Confidence            753         8999999999999999999999999999988877766666

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.97  E-value=2.8e-29  Score=202.44  Aligned_cols=271  Identities=20%  Similarity=0.315  Sum_probs=217.6

Q ss_pred             EEEeecCCCCCceEEEeCCC------------CceE---EEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEE
Q 014475            3 LLIASSSVADTGIGCWDLES------------GAEQ---LRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWS   67 (424)
Q Consensus         3 ~~lat~~~~dg~i~vwd~~~------------~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd   67 (424)
                      .++|||+ .|-.|+|.|++.            |...   ..++....|.+.|.++.  |+|....|++++.| ++|+++|
T Consensus       125 ~lvATGs-aD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~--FHPre~ILiS~srD-~tvKlFD  200 (430)
T KOG0640|consen  125 SLVATGS-ADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLD--FHPRETILISGSRD-NTVKLFD  200 (430)
T ss_pred             cEEEccC-CcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCccccee--ecchhheEEeccCC-CeEEEEe
Confidence            4789999 999999999872            1111   12344456788899999  99999999999998 9999999


Q ss_pred             CCCCcee--ee-ecCCCCeeEEEECCCCCEEEEecCCCcEEEEEccCcceeeee---ccccCCeEEEEEccCCcEEEEee
Q 014475           68 WSKPQVE--VK-SLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKW---HAHYRAVTCLVFSEDGSFLISGS  141 (424)
Q Consensus        68 ~~~~~~~--~~-~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~---~~~~~~i~~~~~~~~~~~l~s~~  141 (424)
                      +.+....  .+ .....+|.++.|+|.|.+|++|.....+++||+++.++...-   ..|.+.|+++.+++.+++.++++
T Consensus       201 fsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaS  280 (430)
T KOG0640|consen  201 FSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSSTGSLYVTAS  280 (430)
T ss_pred             cccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccccceeEEEecCCccEEEEec
Confidence            9876433  22 335679999999999999999999999999999998876554   46899999999999999999999


Q ss_pred             CCCcEEEEeCCcccchhcccccccceEEeec-CC-cCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeeecCc
Q 014475          142 EDGCVRIWSLLTVFEECESQRASHLYLHSFT-GH-TLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPS  219 (424)
Q Consensus       142 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~-~~-~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~  219 (424)
                      .||.|++||--+           ..++.++. .| ...|.+..|..++  +++++.+.|..+++|.+.+++++..+...+
T Consensus       281 kDG~IklwDGVS-----------~rCv~t~~~AH~gsevcSa~Ftkn~--kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg  347 (430)
T KOG0640|consen  281 KDGAIKLWDGVS-----------NRCVRTIGNAHGGSEVCSAVFTKNG--KYILSSGKDSTVKLWEISTGRMLKEYTGAG  347 (430)
T ss_pred             cCCcEEeecccc-----------HHHHHHHHhhcCCceeeeEEEccCC--eEEeecCCcceeeeeeecCCceEEEEecCC
Confidence            999999999733           34444443 34 4568888899988  999999999999999999999998886321


Q ss_pred             ------ceeEEEECCCCCEEEEEe-CCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCCCc
Q 014475          220 ------VIDAIALDPAEHVFYAGS-RDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGM  291 (424)
Q Consensus       220 ------~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~  291 (424)
                            .-+...|+....+++.-. ..+.+.-||.++..        +......+|.+.+..+.-+| +..+++++.|-.
T Consensus       348 ~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtad--------r~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~r  419 (430)
T KOG0640|consen  348 TTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTAD--------RVALLSLGHNGAVRWIVHSPVEPAFMTCSDDFR  419 (430)
T ss_pred             cccchhhhhhhhhcCccceEEccccccCceeeccccchh--------hhhhcccCCCCCceEEEeCCCCCceeeecccce
Confidence                  223445666666666543 35679999999975        33334458999999999999 999999999999


Q ss_pred             EEEEeCC
Q 014475          292 VRVWDPI  298 (424)
Q Consensus       292 i~iwd~~  298 (424)
                      +++|--+
T Consensus       420 aRFWyrr  426 (430)
T KOG0640|consen  420 ARFWYRR  426 (430)
T ss_pred             eeeeeec
Confidence            9999744

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.97  E-value=1.2e-28  Score=197.95  Aligned_cols=249  Identities=20%  Similarity=0.244  Sum_probs=203.6

Q ss_pred             eeeecCCCCeeEEEECC-CCCEEEEecCCCcEEEEEccC-ccee-eeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEe
Q 014475           74 EVKSLPAEPIKPIAANS-HGTYIAGGGQSGDIYMWEVAS-GRLL-KKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWS  150 (424)
Q Consensus        74 ~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~v~iwd~~~-~~~~-~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd  150 (424)
                      .+...+.+.|.+++||| ...++++++.||+|++|+++. |..+ +....|.++|.+++|+.+|..+++|+.|+.+++||
T Consensus        21 ev~~pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wD  100 (347)
T KOG0647|consen   21 EVPNPPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWD  100 (347)
T ss_pred             ecCCCcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEE
Confidence            34445678999999999 566777999999999999986 3333 34467999999999999999999999999999999


Q ss_pred             CCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeeecCcceeEEEECCCC
Q 014475          151 LLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAE  230 (424)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~i~~~~~~~~~  230 (424)
                      +.++            ....+..|..+|..+.|-+......|+||+.|++|+.||.+...++..+..+..+.++..  ..
T Consensus       101 L~S~------------Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv--~~  166 (347)
T KOG0647|consen  101 LASG------------QVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADV--LY  166 (347)
T ss_pred             ccCC------------CeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccceeeehhc--cC
Confidence            9662            345678899999999999887556899999999999999999999999999999888766  46


Q ss_pred             CEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCCC--cEEEEEe
Q 014475          231 HVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITH--NIVRMFR  307 (424)
Q Consensus       231 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~--~~~~~~~  307 (424)
                      .+++++..++.|.+|+++++.....       .....-.-.++|++..+ .+..+.|+-+|.+.|..+..+  +.-.+|+
T Consensus       167 pm~vVata~r~i~vynL~n~~te~k-------~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFk  239 (347)
T KOG0647|consen  167 PMAVVATAERHIAVYNLENPPTEFK-------RIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFK  239 (347)
T ss_pred             ceeEEEecCCcEEEEEcCCCcchhh-------hhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEE
Confidence            6788999999999999987642111       01111234578888877 666799999999999999887  4455677


Q ss_pred             ccCC---------CeeEEEEEecCceeeeccCCCceeeccCCCCC
Q 014475          308 LAKG---------PVNNILVVRRPLYLNLGSFSNPHTSSRRHGSQ  343 (424)
Q Consensus       308 ~~~~---------~v~~l~~s~~~~~l~~~~~d~~i~iw~~~~~~  343 (424)
                      .|..         +|++++|+|....|++++.||+..+||.....
T Consensus       240 CHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~  284 (347)
T KOG0647|consen  240 CHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDART  284 (347)
T ss_pred             EeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhh
Confidence            7762         58899999999999999999999999987543

>PTZ00420 coronin; Provisional

Probab=99.97  E-value=4.8e-28  Score=223.11  Aligned_cols=245  Identities=13%  Similarity=0.151  Sum_probs=187.9

Q ss_pred             ecCCCCCceEEEeCCCCceEEEeeCCCCCCCceEEecceeecC-CCccccCCCCceeEEEEECCCCce---------eee
Q 014475            7 SSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLAS-SQLREQPSASSGSILYWSWSKPQV---------EVK   76 (424)
Q Consensus         7 t~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~l~~~~~~~g~i~vwd~~~~~~---------~~~   76 (424)
                      .|+ .++.|++|+......+..+.+   |...|.+++  |+|+ +.+|++++.| |+|++||+.+...         ...
T Consensus        49 gGG-~~gvI~L~~~~r~~~v~~L~g---H~~~V~~la--fsP~~~~lLASgS~D-gtIrIWDi~t~~~~~~~i~~p~~~L  121 (568)
T PTZ00420         49 GGG-LIGAIRLENQMRKPPVIKLKG---HTSSILDLQ--FNPCFSEILASGSED-LTIRVWEIPHNDESVKEIKDPQCIL  121 (568)
T ss_pred             CCC-ceeEEEeeecCCCceEEEEcC---CCCCEEEEE--EcCCCCCEEEEEeCC-CeEEEEECCCCCccccccccceEEe
Confidence            456 789999999887777766765   456789998  9997 7888888887 9999999975421         123


Q ss_pred             ecCCCCeeEEEECCCCCE-EEEecCCCcEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCccc
Q 014475           77 SLPAEPIKPIAANSHGTY-IAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVF  155 (424)
Q Consensus        77 ~~~~~~v~~~~~s~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~  155 (424)
                      ..|...|.+++|+|++.. |++++.|+.|+|||+++++....+. |...|.+++|+|+|++|++++.|+.|++||+++  
T Consensus       122 ~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rs--  198 (568)
T PTZ00420        122 KGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRK--  198 (568)
T ss_pred             ecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCC--
Confidence            458889999999998875 5788999999999999998777775 667899999999999999999999999999965  


Q ss_pred             chhcccccccceEEeecCCcCceeEEEE-----EEcCceeEEEEEeCCC----cEEEEecCC-CceeeeeecCccee---
Q 014475          156 EECESQRASHLYLHSFTGHTLRITDIVI-----GYGGVSATIVSASEDR----TCKVWSLLK-GRLLRNIVFPSVID---  222 (424)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~-----~~~~~~~~l~~~~~d~----~v~iwd~~~-~~~~~~~~~~~~i~---  222 (424)
                               ...+..+.+|.+.+....+     ++++  .++++++.|+    .|++||+++ .+++..+.+.....   
T Consensus       199 ---------g~~i~tl~gH~g~~~s~~v~~~~fs~d~--~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~  267 (568)
T PTZ00420        199 ---------QEIASSFHIHDGGKNTKNIWIDGLGGDD--NYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLI  267 (568)
T ss_pred             ---------CcEEEEEecccCCceeEEEEeeeEcCCC--CEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceE
Confidence                     3345667888876654443     2454  7888877764    799999995 56666655443333   


Q ss_pred             EEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecCC
Q 014475          223 AIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTG  280 (424)
Q Consensus       223 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  280 (424)
                      .....+++.++++|+.|+.|++|++..+.       ...+..+. +..++.+++|.|.
T Consensus       268 p~~D~~tg~l~lsGkGD~tIr~~e~~~~~-------~~~l~~~~-s~~p~~g~~f~Pk  317 (568)
T PTZ00420        268 PHYDESTGLIYLIGKGDGNCRYYQHSLGS-------IRKVNEYK-SCSPFRSFGFLPK  317 (568)
T ss_pred             EeeeCCCCCEEEEEECCCeEEEEEccCCc-------EEeecccc-cCCCccceEEccc
Confidence            23334568899999999999999997753       13333333 6678889999993

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.97  E-value=1.6e-28  Score=217.85  Aligned_cols=279  Identities=22%  Similarity=0.307  Sum_probs=229.9

Q ss_pred             ceEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCceee---eecCCCCeeE-EEECC-CCCEEEEe
Q 014475           24 AEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEV---KSLPAEPIKP-IAANS-HGTYIAGG   98 (424)
Q Consensus        24 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~---~~~~~~~v~~-~~~s~-~~~~l~~~   98 (424)
                      +....+.+|..-+..+   +  . -++..+++++.| |++++|+-..++...   ...|.+-|.+ +++-+ ++-.+++|
T Consensus         5 ~ls~~l~gH~~DVr~v---~--~-~~~~~i~s~sRd-~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g   77 (745)
T KOG0301|consen    5 KLSHELEGHKSDVRAV---A--V-TDGVCIISGSRD-GTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVG   77 (745)
T ss_pred             eeEEEeccCccchhee---E--e-cCCeEEeecCCC-CceeeeeccCcccccceecccCcceeeccceeccccCcceEee
Confidence            3445666665544333   3  2 234467777777 999999986665443   2335555555 77765 55569999


Q ss_pred             cCCCcEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCce
Q 014475           99 GQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRI  178 (424)
Q Consensus        99 ~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i  178 (424)
                      +.|..+.+|.+.+..+...+++|...|.|+....++. +++||.|.++++|....             +...+.+|+..|
T Consensus        78 ~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~~~-------------l~~~l~gH~asV  143 (745)
T KOG0301|consen   78 GMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRIGE-------------LVYSLQGHTASV  143 (745)
T ss_pred             cccceEEEEecCCCCchhhhhccccceeeeecCCcCc-eEecccccceEEecchh-------------hhcccCCcchhe
Confidence            9999999999999999999999999999999887776 99999999999998743             344589999999


Q ss_pred             eEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeee-cCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCc
Q 014475          179 TDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSY  257 (424)
Q Consensus       179 ~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  257 (424)
                      ++++.-|.   +.++||+.|++|++|.-  ++.++.+. |.+.|+.+++-|++. |++++.||.|++|++..        
T Consensus       144 WAv~~l~e---~~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~~-flScsNDg~Ir~w~~~g--------  209 (745)
T KOG0301|consen  144 WAVASLPE---NTYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDSH-FLSCSNDGSIRLWDLDG--------  209 (745)
T ss_pred             eeeeecCC---CcEEeccCcceeeeccC--CchhhhhccchhheeeeEEecCCC-eEeecCCceEEEEeccC--------
Confidence            99999888   48999999999999985  77788887 999999999988765 77889999999999965        


Q ss_pred             CceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCCCcEEEEEeccCCCeeEEEEEecCceeeeccCCCceee
Q 014475          258 GMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTS  336 (424)
Q Consensus       258 ~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~d~~i~i  336 (424)
                        ..+.++.+|..-|.+++... +..++++++|++++||+..  ++.+.+......|+++.+-++| -|++|+.||.||+
T Consensus       210 --e~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lPttsiWsa~~L~Ng-DIvvg~SDG~VrV  284 (745)
T KOG0301|consen  210 --EVLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVITLPTTSIWSAKVLLNG-DIVVGGSDGRVRV  284 (745)
T ss_pred             --ceeeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEecCccceEEEEEeeCC-CEEEeccCceEEE
Confidence              56888999999999999656 9999999999999999976  8888888767799999999888 4678889999999


Q ss_pred             ccCCCC
Q 014475          337 SRRHGS  342 (424)
Q Consensus       337 w~~~~~  342 (424)
                      |.....
T Consensus       285 fT~~k~  290 (745)
T KOG0301|consen  285 FTVDKD  290 (745)
T ss_pred             EEeccc
Confidence            988744

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.97  E-value=4.5e-27  Score=208.23  Aligned_cols=286  Identities=13%  Similarity=0.101  Sum_probs=211.3

Q ss_pred             eEEEeecCCCCCceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCceeeeecCCC
Q 014475            2 ELLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSLPAE   81 (424)
Q Consensus         2 e~~lat~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~~~~~~   81 (424)
                      |.++++++ .|+.|++||+.+++.+..+..+..    +..++  |+|+++.+++++.+++.|++||..+++.........
T Consensus         1 ~~~~~s~~-~d~~v~~~d~~t~~~~~~~~~~~~----~~~l~--~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~   73 (300)
T TIGR03866         1 EKAYVSNE-KDNTISVIDTATLEVTRTFPVGQR----PRGIT--LSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGP   73 (300)
T ss_pred             CcEEEEec-CCCEEEEEECCCCceEEEEECCCC----CCceE--ECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCC
Confidence            45788999 999999999999999888875432    34566  999999875544344999999998877654333334


Q ss_pred             CeeEEEECCCCCEEEEe-cCCCcEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEeeCCC-cEEEEeCCcccchhc
Q 014475           82 PIKPIAANSHGTYIAGG-GQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDG-CVRIWSLLTVFEECE  159 (424)
Q Consensus        82 ~v~~~~~s~~~~~l~~~-~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg-~i~iwd~~~~~~~~~  159 (424)
                      .+..++|+|+++.++++ ..++.|++||+.+++.+..+.. ...+.+++|+|+++++++++.++ .+.+||.+++.    
T Consensus        74 ~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~-~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~----  148 (300)
T TIGR03866        74 DPELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPV-GVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYE----  148 (300)
T ss_pred             CccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeC-CCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCe----
Confidence            46788999999977655 5689999999998877776653 34468899999999999988775 46677885421    


Q ss_pred             ccccccceEEeecCCcCceeEEEEEEcCceeEEE-EEeCCCcEEEEecCCCceeeeeecC--------cceeEEEECCCC
Q 014475          160 SQRASHLYLHSFTGHTLRITDIVIGYGGVSATIV-SASEDRTCKVWSLLKGRLLRNIVFP--------SVIDAIALDPAE  230 (424)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~-~~~~d~~v~iwd~~~~~~~~~~~~~--------~~i~~~~~~~~~  230 (424)
                             ...... .......+.|++++  ..++ ++..++.|++||+++++.+..+...        .....++++|++
T Consensus       149 -------~~~~~~-~~~~~~~~~~s~dg--~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg  218 (300)
T TIGR03866       149 -------IVDNVL-VDQRPRFAEFTADG--KELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDG  218 (300)
T ss_pred             -------EEEEEE-cCCCccEEEECCCC--CEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCC
Confidence                   111111 22345678899988  5664 5556999999999998877766421        123468899999


Q ss_pred             CEEEEE-eCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEe-CCCCcEEEEeCCCCcEEEEEe
Q 014475          231 HVFYAG-SRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISG-SEDGMVRVWDPITHNIVRMFR  307 (424)
Q Consensus       231 ~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~-~~dg~i~iwd~~~~~~~~~~~  307 (424)
                      ++++++ ..++.+.+||.++..         ..... .+...+.+++|+| +++|+++ +.+|.|++||+++++++..++
T Consensus       219 ~~~~~~~~~~~~i~v~d~~~~~---------~~~~~-~~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~  288 (300)
T TIGR03866       219 KTAFVALGPANRVAVVDAKTYE---------VLDYL-LVGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIK  288 (300)
T ss_pred             CEEEEEcCCCCeEEEEECCCCc---------EEEEE-EeCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEE
Confidence            986554 456789999998753         23222 2445789999999 8888876 568999999999999999998


Q ss_pred             ccCCCeeEEEEEe
Q 014475          308 LAKGPVNNILVVR  320 (424)
Q Consensus       308 ~~~~~v~~l~~s~  320 (424)
                      .. ...+.++++|
T Consensus       289 ~~-~~~~~~~~~~  300 (300)
T TIGR03866       289 VG-RLPWGVVVRP  300 (300)
T ss_pred             cc-cccceeEeCC
Confidence            65 4448888765

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=3.2e-29  Score=213.75  Aligned_cols=243  Identities=18%  Similarity=0.299  Sum_probs=204.9

Q ss_pred             CCCCeeEEEECCCCCE-EEEecCCCcEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccch
Q 014475           79 PAEPIKPIAANSHGTY-IAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEE  157 (424)
Q Consensus        79 ~~~~v~~~~~s~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~  157 (424)
                      ....|.+++|+|...+ +|+++ .-.+.||+..+....+.+......+.++.|..||++|++|...|.|++||+.+    
T Consensus        25 e~~~vssl~fsp~~P~d~aVt~-S~rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~----   99 (487)
T KOG0310|consen   25 EHNSVSSLCFSPKHPYDFAVTS-SVRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKS----   99 (487)
T ss_pred             ccCcceeEecCCCCCCceEEec-ccEEEEEecchhhhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEecccc----
Confidence            3578999999995443 55544 45799999988888888888889999999999999999999999999999633    


Q ss_pred             hcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeee-cCcceeEEEECCC-CCEEEE
Q 014475          158 CESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPA-EHVFYA  235 (424)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~-~~~~i~~~~~~~~-~~~l~~  235 (424)
                             ...+..+.+|+.++..+.|+|.+. ..+++|+.|+.+++||+.+......+. |.+.|.+.+|+|. +..+++
T Consensus       100 -------r~iLR~~~ah~apv~~~~f~~~d~-t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvt  171 (487)
T KOG0310|consen  100 -------RVILRQLYAHQAPVHVTKFSPQDN-TMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVT  171 (487)
T ss_pred             -------HHHHHHHhhccCceeEEEecccCC-eEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEe
Confidence                   445667889999999999999875 788999999999999999888654555 8999999999995 568999


Q ss_pred             EeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCCCc-EEEEEeccCCCe
Q 014475          236 GSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHN-IVRMFRLAKGPV  313 (424)
Q Consensus       236 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~-~~~~~~~~~~~v  313 (424)
                      |+.||.|++||++...        ..+.++ .|..+|..+.+-| |..+++++ ...|++||+.+|. .+..+..|...|
T Consensus       172 GsYDg~vrl~DtR~~~--------~~v~el-nhg~pVe~vl~lpsgs~iasAg-Gn~vkVWDl~~G~qll~~~~~H~KtV  241 (487)
T KOG0310|consen  172 GSYDGKVRLWDTRSLT--------SRVVEL-NHGCPVESVLALPSGSLIASAG-GNSVKVWDLTTGGQLLTSMFNHNKTV  241 (487)
T ss_pred             cCCCceEEEEEeccCC--------ceeEEe-cCCCceeeEEEcCCCCEEEEcC-CCeEEEEEecCCceehhhhhcccceE
Confidence            9999999999999863        233333 5999999999999 78999887 5579999999664 455555599999


Q ss_pred             eEEEEEecCceeeeccCCCceeeccCCCCCC
Q 014475          314 NNILVVRRPLYLNLGSFSNPHTSSRRHGSQL  344 (424)
Q Consensus       314 ~~l~~s~~~~~l~~~~~d~~i~iw~~~~~~~  344 (424)
                      +|+.+..++..|++|+-|+.+++|++.+-+.
T Consensus       242 TcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kv  272 (487)
T KOG0310|consen  242 TCLRLASDSTRLLSGSLDRHVKVFDTTNYKV  272 (487)
T ss_pred             EEEEeecCCceEeecccccceEEEEccceEE
Confidence            9999999999999999999999999765443

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.97  E-value=3.2e-30  Score=215.33  Aligned_cols=247  Identities=22%  Similarity=0.295  Sum_probs=217.2

Q ss_pred             ecCCCCeeEEEECCCCCEEEEecCCCcEEEEEccCcc--eeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcc
Q 014475           77 SLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGR--LLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTV  154 (424)
Q Consensus        77 ~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~--~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~  154 (424)
                      ..|.+.+..+.|-++...|++|+.|..|++|+...++  .+.++.+..++|+.+.|.++++++++++.|+.+++|++.  
T Consensus       172 d~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd--  249 (459)
T KOG0288|consen  172 DAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVD--  249 (459)
T ss_pred             hccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeecc--
Confidence            4578899999999998999999999999999987665  677888889999999999999999999999999999994  


Q ss_pred             cchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeeecCcceeEEEECCCCCEEE
Q 014475          155 FEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFY  234 (424)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~  234 (424)
                               ......++.+|...|+++.|....  ..+++|+.|.++++||+....+.+.+.....+..++.+  ...++
T Consensus       250 ---------~~r~~~TLsGHtdkVt~ak~~~~~--~~vVsgs~DRtiK~WDl~k~~C~kt~l~~S~cnDI~~~--~~~~~  316 (459)
T KOG0288|consen  250 ---------SLRLRHTLSGHTDKVTAAKFKLSH--SRVVSGSADRTIKLWDLQKAYCSKTVLPGSQCNDIVCS--ISDVI  316 (459)
T ss_pred             ---------chhhhhhhcccccceeeehhhccc--cceeeccccchhhhhhhhhhheeccccccccccceEec--ceeee
Confidence                     455677899999999999998876  55999999999999999999998888877888888876  66788


Q ss_pred             EEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCCCcEEEEEeccC---
Q 014475          235 AGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAK---  310 (424)
Q Consensus       235 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~---  310 (424)
                      +|..|++|++||.+..         .+......+. .|+++..++ +..+.+++.|.++.+.|+++.+....+.+..   
T Consensus       317 SgH~DkkvRfwD~Rs~---------~~~~sv~~gg-~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~  386 (459)
T KOG0288|consen  317 SGHFDKKVRFWDIRSA---------DKTRSVPLGG-RVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKC  386 (459)
T ss_pred             ecccccceEEEeccCC---------ceeeEeecCc-ceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeecccccc
Confidence            9999999999999997         4455555554 899999999 8899999999999999999999888877432   


Q ss_pred             -CCeeEEEEEecCceeeeccCCCceeeccCCCCCCCCCc
Q 014475          311 -GPVNNILVVRRPLYLNLGSFSNPHTSSRRHGSQLPPPL  348 (424)
Q Consensus       311 -~~v~~l~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~  348 (424)
                       ..++.+.|||++.|+++||.||.|+||++.++++...+
T Consensus       387 asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l  425 (459)
T KOG0288|consen  387 ASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVL  425 (459)
T ss_pred             ccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEe
Confidence             35899999999999999999999999999998875443

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.97  E-value=1.2e-28  Score=208.85  Aligned_cols=247  Identities=21%  Similarity=0.355  Sum_probs=215.5

Q ss_pred             eeeeecCCCCeeEEEECCCCCEEEEecCCCcEEEEEccCcceee----e-------------e-ccccCCeEEEEEccCC
Q 014475           73 VEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLK----K-------------W-HAHYRAVTCLVFSEDG  134 (424)
Q Consensus        73 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~----~-------------~-~~~~~~i~~~~~~~~~  134 (424)
                      ......|.-+|.+++++|++++.++++.+|+|.-|++.+++...    .             - +.|...+.+++.++|+
T Consensus       135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dg  214 (479)
T KOG0299|consen  135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDG  214 (479)
T ss_pred             ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCC
Confidence            34445688999999999999999999999999999998875331    1             1 2688899999999999


Q ss_pred             cEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeee
Q 014475          135 SFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRN  214 (424)
Q Consensus       135 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~  214 (424)
                      ++|++|+.|..|.||+.++           ...++.+.+|.+.|.+++|-...  ..+++++.|+.+++|++.....+.+
T Consensus       215 kylatgg~d~~v~Iw~~~t-----------~ehv~~~~ghr~~V~~L~fr~gt--~~lys~s~Drsvkvw~~~~~s~vet  281 (479)
T KOG0299|consen  215 KYLATGGRDRHVQIWDCDT-----------LEHVKVFKGHRGAVSSLAFRKGT--SELYSASADRSVKVWSIDQLSYVET  281 (479)
T ss_pred             cEEEecCCCceEEEecCcc-----------cchhhcccccccceeeeeeecCc--cceeeeecCCceEEEehhHhHHHHH
Confidence            9999999999999999966           44567789999999999998877  8899999999999999998877777


Q ss_pred             ee-cCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecCCCEEEEeCCCCcEE
Q 014475          215 IV-FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTGDLLISGSEDGMVR  293 (424)
Q Consensus       215 ~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~t~~~dg~i~  293 (424)
                      +. |+..|..+....-++.+-+|+.|+++++|++...          ....+.+|.+.+-|++|-....+++|+.+|.|.
T Consensus       282 lyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~ee----------sqlifrg~~~sidcv~~In~~HfvsGSdnG~Ia  351 (479)
T KOG0299|consen  282 LYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEE----------SQLIFRGGEGSIDCVAFINDEHFVSGSDNGSIA  351 (479)
T ss_pred             HhCCccceeeechhcccceEEeccccceeEEEecccc----------ceeeeeCCCCCeeeEEEecccceeeccCCceEE
Confidence            66 9999999999999999999999999999999654          244677889999999998889999999999999


Q ss_pred             EEeCCCCcEEEEEec-c-----------CCCeeEEEEEecCceeeeccCCCceeeccCCCC
Q 014475          294 VWDPITHNIVRMFRL-A-----------KGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGS  342 (424)
Q Consensus       294 iwd~~~~~~~~~~~~-~-----------~~~v~~l~~s~~~~~l~~~~~d~~i~iw~~~~~  342 (424)
                      +|++...+++.+.+. |           +..|++++..|...++++|+.+|.|++|.+..+
T Consensus       352 LWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g  412 (479)
T KOG0299|consen  352 LWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDG  412 (479)
T ss_pred             EeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCC
Confidence            999999999887652 2           127899999999999999999999999999876

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=2.8e-29  Score=221.07  Aligned_cols=237  Identities=19%  Similarity=0.326  Sum_probs=207.6

Q ss_pred             EEEEC-CCCCEEEEecCCCcEEEEEccCcc------eeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccch
Q 014475           85 PIAAN-SHGTYIAGGGQSGDIYMWEVASGR------LLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEE  157 (424)
Q Consensus        85 ~~~~s-~~~~~l~~~~~dg~v~iwd~~~~~------~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~  157 (424)
                      .+..+ |.+++|++||.||.|++|+.....      .+.+++.|...|+.+....+++.|+++|.|-+|++|+...    
T Consensus        29 ~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~----  104 (735)
T KOG0308|consen   29 ALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHK----  104 (735)
T ss_pred             hccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeeccc----
Confidence            44444 467889999999999999986442      3667889999999999999999999999999999999965    


Q ss_pred             hcccccccceEEeecCCcCceeEEEE-EEcCceeEEEEEeCCCcEEEEecCCCc--eeeeee----------cCcceeEE
Q 014475          158 CESQRASHLYLHSFTGHTLRITDIVI-GYGGVSATIVSASEDRTCKVWSLLKGR--LLRNIV----------FPSVIDAI  224 (424)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~~l~~~~~d~~v~iwd~~~~~--~~~~~~----------~~~~i~~~  224 (424)
                           ....+..++..|...|.|+++ .++.  ..+++|+-|+.|.+||++++.  .+..+.          +..+|.++
T Consensus       105 -----~~~~c~stir~H~DYVkcla~~ak~~--~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSL  177 (735)
T KOG0308|consen  105 -----DNTFCMSTIRTHKDYVKCLAYIAKNN--ELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSL  177 (735)
T ss_pred             -----CcchhHhhhhcccchheeeeecccCc--eeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeee
Confidence                 223566778899999999999 5555  899999999999999999772  222221          44679999


Q ss_pred             EECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCCCcEE
Q 014475          225 ALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIV  303 (424)
Q Consensus       225 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~~  303 (424)
                      +.++.+..++.|+.++.+++||.++.         +.+..+++|...|..+..++ |..+++++.||+|++||+...+++
T Consensus       178 A~N~t~t~ivsGgtek~lr~wDprt~---------~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl  248 (735)
T KOG0308|consen  178 AMNQTGTIIVSGGTEKDLRLWDPRTC---------KKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCL  248 (735)
T ss_pred             ecCCcceEEEecCcccceEEeccccc---------cceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeecccccee
Confidence            99999999999999999999999997         45667889999999999999 999999999999999999999999


Q ss_pred             EEEeccCCCeeEEEEEecCceeeeccCCCceeeccCCC
Q 014475          304 RMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHG  341 (424)
Q Consensus       304 ~~~~~~~~~v~~l~~s~~~~~l~~~~~d~~i~iw~~~~  341 (424)
                      .++..|...|+++..+|+=..+.+|+.||.|..=++++
T Consensus       249 ~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n  286 (735)
T KOG0308|consen  249 ATYIVHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRN  286 (735)
T ss_pred             eeEEeccCceEEEeeCCCcceEEecCCCCcEEecccCC
Confidence            99999999999999999999999999999999988886

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=9.3e-28  Score=193.44  Aligned_cols=263  Identities=17%  Similarity=0.232  Sum_probs=208.9

Q ss_pred             eeecCCCCeeEEEECCCCCEEEEecCCCcEEEEEccCc----ceeeeeccccCCeEEEEEcc--CCcEEEEeeCCCcEEE
Q 014475           75 VKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASG----RLLKKWHAHYRAVTCLVFSE--DGSFLISGSEDGCVRI  148 (424)
Q Consensus        75 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~----~~~~~~~~~~~~i~~~~~~~--~~~~l~s~~~dg~i~i  148 (424)
                      +...|.+-|.++.|.+.|+.+|+++.|++|+|||.++.    .+....+.|.+.|..+.|.+  -|+.+++++.|+++.|
T Consensus         8 i~s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~i   87 (361)
T KOG2445|consen    8 IDSGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSI   87 (361)
T ss_pred             cccCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceee
Confidence            44567888999999999999999999999999997544    45567789999999999965  5889999999999999


Q ss_pred             EeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCC------ceeeeee------
Q 014475          149 WSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKG------RLLRNIV------  216 (424)
Q Consensus       149 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~------~~~~~~~------  216 (424)
                      |.-.....  +..........++......|+++.|.|..-+-.|++++.||.+|||+.-..      .+...+.      
T Consensus        88 WEE~~~~~--~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp  165 (361)
T KOG2445|consen   88 WEEQEKSE--EAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPP  165 (361)
T ss_pred             eeeccccc--ccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCc
Confidence            97532111  111123445566777889999999999877789999999999999986543      2223332      


Q ss_pred             --cCcceeEEEECC---CCCEEEEEeCC-----CcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC--C---C
Q 014475          217 --FPSVIDAIALDP---AEHVFYAGSRD-----GSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST--G---D  281 (424)
Q Consensus       217 --~~~~i~~~~~~~---~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~---~  281 (424)
                        +..+..|+.|+|   ...+|++|+.+     +.+.||........     +..+.++.+|..+|+.++|.|  |   .
T Consensus       166 ~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rK-----w~kva~L~d~~dpI~di~wAPn~Gr~y~  240 (361)
T KOG2445|consen  166 GKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRK-----WLKVAELPDHTDPIRDISWAPNIGRSYH  240 (361)
T ss_pred             ccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcce-----eeeehhcCCCCCcceeeeeccccCCcee
Confidence              445678999998   45788888876     57888888765321     356778889999999999999  4   4


Q ss_pred             EEEEeCCCCcEEEEeCCCC--------------------cEEEEEeccCCCeeEEEEEecCceeeeccCCCceeeccCCC
Q 014475          282 LLISGSEDGMVRVWDPITH--------------------NIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHG  341 (424)
Q Consensus       282 ~l~t~~~dg~i~iwd~~~~--------------------~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~d~~i~iw~~~~  341 (424)
                      +||+++.|| |+||.++..                    +.+..+..|+++|+.+.|+-.|..|++.+.||+||+|...-
T Consensus       241 ~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkany  319 (361)
T KOG2445|consen  241 LLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKANY  319 (361)
T ss_pred             eEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhhh
Confidence            899999999 999998731                    24556778999999999999999999999999999999875


Q ss_pred             CCCC
Q 014475          342 SQLP  345 (424)
Q Consensus       342 ~~~~  345 (424)
                      ....
T Consensus       320 ~n~~  323 (361)
T KOG2445|consen  320 NNLW  323 (361)
T ss_pred             hhhh
Confidence            4443

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.96  E-value=2e-29  Score=207.21  Aligned_cols=269  Identities=20%  Similarity=0.281  Sum_probs=211.7

Q ss_pred             EEeecCCCCCceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCceeeeecCCCCe
Q 014475            4 LIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSLPAEPI   83 (424)
Q Consensus         4 ~lat~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~~~~~~~v   83 (424)
                      .+|+|+ .||.|+|||+.+.+++.++++|.+.+.++.     +..  ..++++|.| .+|+.|.++.+ ..........+
T Consensus        81 ~~aSGs-~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~-----v~~--~~~~tvgdD-KtvK~wk~~~~-p~~tilg~s~~  150 (433)
T KOG0268|consen   81 TVASGS-CDGEVKIWNLSQRECIRTFKAHEGLVRGIC-----VTQ--TSFFTVGDD-KTVKQWKIDGP-PLHTILGKSVY  150 (433)
T ss_pred             hhhccc-cCceEEEEehhhhhhhheeecccCceeeEE-----ecc--cceEEecCC-cceeeeeccCC-cceeeeccccc
Confidence            578999 999999999999999999999887766654     333  667788887 99999998875 33334456677


Q ss_pred             eEEEECCCCCEEEEecCCCcEEEEEccCcceeeeeccccCCeEEEEEccC-CcEEEEeeCCCcEEEEeCCcccchhcccc
Q 014475           84 KPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSED-GSFLISGSEDGCVRIWSLLTVFEECESQR  162 (424)
Q Consensus        84 ~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~  162 (424)
                      ..+.-+..+..++++|.  .|.|||.+...++..+.-....|.++.|+|. ...|++|+.|+.|.+||+++..       
T Consensus       151 ~gIdh~~~~~~FaTcGe--~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~-------  221 (433)
T KOG0268|consen  151 LGIDHHRKNSVFATCGE--QIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQAS-------  221 (433)
T ss_pred             cccccccccccccccCc--eeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCC-------
Confidence            88888888888999886  5999999999999999888889999999994 4567788899999999997632       


Q ss_pred             cccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCce-eeeee-cCcceeEEEECCCCCEEEEEeCCC
Q 014475          163 ASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRL-LRNIV-FPSVIDAIALDPAEHVFYAGSRDG  240 (424)
Q Consensus       163 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~-~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg  240 (424)
                          +++... -...-+.++|+|.+  ..++++++|..+..+|++..+. +.... |...+.++.|+|.|+-+++|+.|.
T Consensus       222 ----Pl~KVi-~~mRTN~IswnPea--fnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDk  294 (433)
T KOG0268|consen  222 ----PLKKVI-LTMRTNTICWNPEA--FNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDK  294 (433)
T ss_pred             ----ccceee-eeccccceecCccc--cceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhccccccc
Confidence                122111 12344678999965  7899999999999999986543 33333 788999999999999999999999


Q ss_pred             cEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCCCcEEEEE
Q 014475          241 SIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMF  306 (424)
Q Consensus       241 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~~~~~  306 (424)
                      +|+||..+.+...       .+ -...--..|.++.|+- ..++++||.|+.|++|.....+.+..+
T Consensus       295 sIRIf~~~~~~SR-------di-YhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~Aseklgv~  353 (433)
T KOG0268|consen  295 SIRIFPVNHGHSR-------DI-YHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKASEKLGVI  353 (433)
T ss_pred             eEEEeecCCCcch-------hh-hhHhhhheeeEEEEeccccEEEecCCCcceeeeecchhhhcCCC
Confidence            9999999886411       00 0111225689999999 999999999999999998765544433

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.96  E-value=1.8e-28  Score=210.46  Aligned_cols=269  Identities=17%  Similarity=0.259  Sum_probs=209.3

Q ss_pred             EEEeecCCCCCceEEEeCCCC----ceEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCceee---
Q 014475            3 LLIASSSVADTGIGCWDLESG----AEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEV---   75 (424)
Q Consensus         3 ~~lat~~~~dg~i~vwd~~~~----~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~---   75 (424)
                      ..|++|+ -|-+|++||+...    +..+.+..+..  +.+.++.  |++.|..+++.+.. -..+|+|-+..+...   
T Consensus       180 aR~~sGs-~Dy~v~~wDf~gMdas~~~fr~l~P~E~--h~i~sl~--ys~Tg~~iLvvsg~-aqakl~DRdG~~~~e~~K  253 (641)
T KOG0772|consen  180 ARFVSGS-LDYTVKFWDFQGMDASMRSFRQLQPCET--HQINSLQ--YSVTGDQILVVSGS-AQAKLLDRDGFEIVEFSK  253 (641)
T ss_pred             ceeeecc-ccceEEEEecccccccchhhhccCcccc--cccceee--ecCCCCeEEEEecC-cceeEEccCCceeeeeec
Confidence            4689999 9999999998743    33455555554  4577777  99999988888776 899999987655332   


Q ss_pred             ----------eecCCCCeeEEEECCC-CCEEEEecCCCcEEEEEccCcce-eeee-----ccccCCeEEEEEccCCcEEE
Q 014475           76 ----------KSLPAEPIKPIAANSH-GTYIAGGGQSGDIYMWEVASGRL-LKKW-----HAHYRAVTCLVFSEDGSFLI  138 (424)
Q Consensus        76 ----------~~~~~~~v~~~~~s~~-~~~l~~~~~dg~v~iwd~~~~~~-~~~~-----~~~~~~i~~~~~~~~~~~l~  138 (424)
                                ...|...++|.+|+|+ ...+++++.||+++|||+...+. ...+     .+..-+++.++|++++++||
T Consensus       254 GDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iA  333 (641)
T KOG0772|consen  254 GDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIA  333 (641)
T ss_pred             cchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcchhh
Confidence                      2357789999999995 56788999999999999976543 2333     23445789999999999999


Q ss_pred             EeeCCCcEEEEeCCcccchhcccccccceEEeecCCcC--ceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCc-eeeee
Q 014475          139 SGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTL--RITDIVIGYGGVSATIVSASEDRTCKVWSLLKGR-LLRNI  215 (424)
Q Consensus       139 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~-~~~~~  215 (424)
                      +|..||.|.+|+....        ........-..|..  .|+++.|++++  ++|++-+.|+++++||++..+ ++...
T Consensus       334 agc~DGSIQ~W~~~~~--------~v~p~~~vk~AH~~g~~Itsi~FS~dg--~~LlSRg~D~tLKvWDLrq~kkpL~~~  403 (641)
T KOG0772|consen  334 AGCLDGSIQIWDKGSR--------TVRPVMKVKDAHLPGQDITSISFSYDG--NYLLSRGFDDTLKVWDLRQFKKPLNVR  403 (641)
T ss_pred             hcccCCceeeeecCCc--------ccccceEeeeccCCCCceeEEEecccc--chhhhccCCCceeeeeccccccchhhh
Confidence            9999999999998542        12223344466776  99999999999  999999999999999999754 33333


Q ss_pred             e---cCcceeEEEECCCCCEEEEEeC------CCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEE
Q 014475          216 V---FPSVIDAIALDPAEHVFYAGSR------DGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLIS  285 (424)
Q Consensus       216 ~---~~~~i~~~~~~~~~~~l~~~~~------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t  285 (424)
                      .   ...+-+.++|+|+.+++++|+.      .|.+.+||..+-         ..+..+.-....|..+.|+| -+.|..
T Consensus       404 tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~---------d~v~ki~i~~aSvv~~~WhpkLNQi~~  474 (641)
T KOG0772|consen  404 TGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTL---------DTVYKIDISTASVVRCLWHPKLNQIFA  474 (641)
T ss_pred             cCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccce---------eeEEEecCCCceEEEEeecchhhheee
Confidence            2   4456788999999999999863      468999998885         55666665678899999999 777778


Q ss_pred             eCCCCcEEEEe
Q 014475          286 GSEDGMVRVWD  296 (424)
Q Consensus       286 ~~~dg~i~iwd  296 (424)
                      |+.||.+++|-
T Consensus       475 gsgdG~~~vyY  485 (641)
T KOG0772|consen  475 GSGDGTAHVYY  485 (641)
T ss_pred             ecCCCceEEEE
Confidence            88899998864

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.96  E-value=7.2e-28  Score=205.88  Aligned_cols=295  Identities=17%  Similarity=0.208  Sum_probs=230.0

Q ss_pred             CeEEEeecCCCCCceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCc--ee-eee
Q 014475            1 MELLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQ--VE-VKS   77 (424)
Q Consensus         1 ~e~~lat~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~--~~-~~~   77 (424)
                      ||++.+..+  ...++|||+...+....+..+.. ..++..+.  |.....+++.....|..+++|.-..+.  +. ...
T Consensus         2 qeNl~~aS~--gd~~kl~D~s~~~~~~~~~~~t~-~pg~~s~~--w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k   76 (673)
T KOG4378|consen    2 QENLHVAST--GDKTKLSDFSDLETKSEYVHQTA-EPGDFSFN--WQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRK   76 (673)
T ss_pred             Ccceeeecc--CCceEEeecccccCccccccCCC-CCcceeee--ccccceEEEeecCCceeEEEecccCCCCccceeec
Confidence            566555555  35799999988777777755554 44588888  888776444444444899999876552  22 223


Q ss_pred             cCCCCeeEEEECCCCCEEEEecCCCcEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccch
Q 014475           78 LPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEE  157 (424)
Q Consensus        78 ~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~  157 (424)
                      ...+.-.|++......++++|+..+.|+|||++...+.+.+++|...|+++.+...+.+|++++..|.|.|..+.++.. 
T Consensus        77 ~~gd~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~-  155 (673)
T KOG4378|consen   77 LTGDNAFCVACASQSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQK-  155 (673)
T ss_pred             cccchHHHHhhhhcceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCcc-
Confidence            3344555565555568999999999999999998888888999999999999999999999999999999999966321 


Q ss_pred             hcccccccceEEeecCC-cCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeee--cCcceeEEEECC-CCCEE
Q 014475          158 CESQRASHLYLHSFTGH-TLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV--FPSVIDAIALDP-AEHVF  233 (424)
Q Consensus       158 ~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~--~~~~i~~~~~~~-~~~~l  233 (424)
                                ...+... ...+.-+.+++... .+|.+++.+|.|.+||+....++..+.  |..+...+||+| +..+|
T Consensus       156 ----------tt~f~~~sgqsvRll~ys~skr-~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~  224 (673)
T KOG4378|consen  156 ----------TTTFTIDSGQSVRLLRYSPSKR-FLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALL  224 (673)
T ss_pred             ----------ccceecCCCCeEEEeecccccc-eeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceE
Confidence                      2223322 34456788888764 677889999999999998888777665  889999999999 55677


Q ss_pred             EEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCC-CcEEEEEeccCC
Q 014475          234 YAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPIT-HNIVRMFRLAKG  311 (424)
Q Consensus       234 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~-~~~~~~~~~~~~  311 (424)
                      ++.+.|.+|.+||++...         ....+ ....+.+.++|.+ |.+|+.|...|.|..||++. ..++..+..|..
T Consensus       225 vsVG~Dkki~~yD~~s~~---------s~~~l-~y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~  294 (673)
T KOG4378|consen  225 VSVGYDKKINIYDIRSQA---------STDRL-TYSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDA  294 (673)
T ss_pred             EEecccceEEEeeccccc---------cccee-eecCCcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeeccc
Confidence            888999999999999753         22222 3457889999999 99999999999999999995 568899999999


Q ss_pred             CeeEEEEEecC
Q 014475          312 PVNNILVVRRP  322 (424)
Q Consensus       312 ~v~~l~~s~~~  322 (424)
                      .|++++|-|..
T Consensus       295 sVt~vafq~s~  305 (673)
T KOG4378|consen  295 SVTRVAFQPSP  305 (673)
T ss_pred             ceeEEEeeecc
Confidence            99999999875

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.96  E-value=6.2e-28  Score=204.34  Aligned_cols=252  Identities=14%  Similarity=0.213  Sum_probs=201.3

Q ss_pred             CCCceEEecceeecCCCccccCCCCceeEEEEECCCCcee-----------eeecCCCCeeEEEECCC-CCEEEEecCCC
Q 014475           35 PPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVE-----------VKSLPAEPIKPIAANSH-GTYIAGGGQSG  102 (424)
Q Consensus        35 ~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~-----------~~~~~~~~v~~~~~s~~-~~~l~~~~~dg  102 (424)
                      |.+.|.-+.  +.|....++++...++.|.|||..+..-.           ....|...-..++|++. .-.|++++.|+
T Consensus       123 h~gEVnRaR--ymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~  200 (422)
T KOG0264|consen  123 HDGEVNRAR--YMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDH  200 (422)
T ss_pred             CCccchhhh--hCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCC
Confidence            444455444  88888888877666699999998743211           33456666788999984 55789999999


Q ss_pred             cEEEEEccCcc-------eeeeeccccCCeEEEEEcc-CCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCC
Q 014475          103 DIYMWEVASGR-------LLKKWHAHYRAVTCLVFSE-DGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGH  174 (424)
Q Consensus       103 ~v~iwd~~~~~-------~~~~~~~~~~~i~~~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  174 (424)
                      .|++||+....       ....+.+|...|..++|++ +..+|++++.|+.+.|||.++         ....+.+...+|
T Consensus       201 ~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~---------~~~~~~~~~~ah  271 (422)
T KOG0264|consen  201 TICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRS---------NTSKPSHSVKAH  271 (422)
T ss_pred             cEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCC---------CCCCCccccccc
Confidence            99999996542       3456789999999999999 667899999999999999975         134445667889


Q ss_pred             cCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCc-eeeeee-cCcceeEEEECCC-CCEEEEEeCCCcEEEEEcCCCC
Q 014475          175 TLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGR-LLRNIV-FPSVIDAIALDPA-EHVFYAGSRDGSIYIAALNAES  251 (424)
Q Consensus       175 ~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~-~~~~~~-~~~~i~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~  251 (424)
                      ...++|++|+|-+. ..||+|+.|++|.+||+|+.. ++..+. |...|.++.|+|. ...|++++.|+.+.+||+..-.
T Consensus       272 ~~~vn~~~fnp~~~-~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig  350 (422)
T KOG0264|consen  272 SAEVNCVAFNPFNE-FILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIG  350 (422)
T ss_pred             CCceeEEEeCCCCC-ceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccc
Confidence            99999999999875 899999999999999999754 444554 8999999999995 5778889999999999997643


Q ss_pred             CCC-----CCcCceeeeeecccCcCeEEEEecC--CCEEEEeCCCCcEEEEeCC
Q 014475          252 PST-----SSYGMHIIGSLSDHSKAVTCLAYST--GDLLISGSEDGMVRVWDPI  298 (424)
Q Consensus       252 ~~~-----~~~~~~~~~~~~~~~~~i~~~~~~~--~~~l~t~~~dg~i~iwd~~  298 (424)
                      ...     ......++....||...|..+.|+|  .-.+++.++|+.+.||.+.
T Consensus       351 ~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s  404 (422)
T KOG0264|consen  351 EEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMA  404 (422)
T ss_pred             cccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence            322     1223466778889999999999999  6688889999999999976

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.96  E-value=2.5e-27  Score=200.85  Aligned_cols=287  Identities=16%  Similarity=0.243  Sum_probs=234.5

Q ss_pred             CCCCceEEecceeecCCCccccCCCCceeEEEEECCCCcee---eeecCCCCeeEEEECCCCC-EEEEecCCCcEEEEEc
Q 014475           34 SPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVE---VKSLPAEPIKPIAANSHGT-YIAGGGQSGDIYMWEV  109 (424)
Q Consensus        34 ~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~---~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~v~iwd~  109 (424)
                      ....+|+++.  |+|..+.++++|.| |++++|.++...-.   -......||.+..|.|+|. .+++++....++.||+
T Consensus       211 ps~~~I~sv~--FHp~~plllvaG~d-~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDl  287 (514)
T KOG2055|consen  211 PSHGGITSVQ--FHPTAPLLLVAGLD-GTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDL  287 (514)
T ss_pred             cCcCCceEEE--ecCCCceEEEecCC-CcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeec
Confidence            3457899999  99999999999998 99999999865433   2233477999999999999 8999999999999999


Q ss_pred             cCcceee--eecccc-CCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEc
Q 014475          110 ASGRLLK--KWHAHY-RAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYG  186 (424)
Q Consensus       110 ~~~~~~~--~~~~~~-~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  186 (424)
                      .+.+..+  ...++. ..+.....+|++++|+..+..|.|.+....+           ...+..++ -.+.|.+++|+.+
T Consensus       288 e~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT-----------~eli~s~K-ieG~v~~~~fsSd  355 (514)
T KOG2055|consen  288 ETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKT-----------KELITSFK-IEGVVSDFTFSSD  355 (514)
T ss_pred             cccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhh-----------hhhhheee-eccEEeeEEEecC
Confidence            8886543  233333 4577888999999999999999999988754           22333333 4678999999988


Q ss_pred             CceeEEEEEeCCCcEEEEecCCCceeeeeecCcce--eEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeee
Q 014475          187 GVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVI--DAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGS  264 (424)
Q Consensus       187 ~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~i--~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~  264 (424)
                      +  +.|++++.+|.|.+||++...+++.+...+.+  +++|.++++.+||+|+..|.|-|||.++......   ++++..
T Consensus       356 s--k~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~---PkPik~  430 (514)
T KOG2055|consen  356 S--KELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTN---PKPIKT  430 (514)
T ss_pred             C--cEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCC---CCchhh
Confidence            8  88888999999999999999999999866655  5677779999999999999999999776433222   356667


Q ss_pred             ecccCcCeEEEEecC-CCEEEEeC--CCCcEEEEeCCCCcEEEEEeccC---CCeeEEEEEecCceeeeccCCCceeecc
Q 014475          265 LSDHSKAVTCLAYST-GDLLISGS--EDGMVRVWDPITHNIVRMFRLAK---GPVNNILVVRRPLYLNLGSFSNPHTSSR  338 (424)
Q Consensus       265 ~~~~~~~i~~~~~~~-~~~l~t~~--~dg~i~iwd~~~~~~~~~~~~~~---~~v~~l~~s~~~~~l~~~~~d~~i~iw~  338 (424)
                      +..-...|++++|++ ..+|+.++  .+..+++-.+.+......+....   +.|+|++|+|.+-+||.|..+|.+.+|.
T Consensus       431 ~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~k  510 (514)
T KOG2055|consen  431 VDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFK  510 (514)
T ss_pred             hhhhheeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEe
Confidence            777778999999999 88888777  46789999999887777766443   4789999999999999999999999998


Q ss_pred             CC
Q 014475          339 RH  340 (424)
Q Consensus       339 ~~  340 (424)
                      +.
T Consensus       511 L~  512 (514)
T KOG2055|consen  511 LH  512 (514)
T ss_pred             ec
Confidence            75

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.96  E-value=4.3e-27  Score=208.83  Aligned_cols=260  Identities=16%  Similarity=0.274  Sum_probs=212.0

Q ss_pred             EEEeecCCCCCceEEEeCCCCceEEEeeCCCCCCCceEE-ecceeec-CCCccccCCCCceeEEEEECCCCcee-eeecC
Q 014475            3 LLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLAC-VGQRFLA-SSQLREQPSASSGSILYWSWSKPQVE-VKSLP   79 (424)
Q Consensus         3 ~~lat~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~-~~~~~~~-~~~~l~~~~~~~g~i~vwd~~~~~~~-~~~~~   79 (424)
                      ..+++++ .||++++|+-..++.+.+ ....+|.+-+.+ ++  |.+ ++-.+++++.| ++|.+|...+.++. ....|
T Consensus        26 ~~i~s~s-Rd~t~~vw~~~~~~~l~~-~~~~~~~g~i~~~i~--y~e~~~~~l~~g~~D-~~i~v~~~~~~~P~~~LkgH  100 (745)
T KOG0301|consen   26 VCIISGS-RDGTVKVWAKKGKQYLET-HAFEGPKGFIANSIC--YAESDKGRLVVGGMD-TTIIVFKLSQAEPLYTLKGH  100 (745)
T ss_pred             eEEeecC-CCCceeeeeccCcccccc-eecccCcceeeccce--eccccCcceEeeccc-ceEEEEecCCCCchhhhhcc
Confidence            4688899 999999999765554432 122334344444 44  654 44558888887 99999999887765 55789


Q ss_pred             CCCeeEEEECCCCCEEEEecCCCcEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhc
Q 014475           80 AEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECE  159 (424)
Q Consensus        80 ~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~  159 (424)
                      ...|.+++...++. +++|+.|.++++|-  .+++...+++|...|+++...|++ .++||+.|.+|++|.-.       
T Consensus       101 ~snVC~ls~~~~~~-~iSgSWD~TakvW~--~~~l~~~l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~~-------  169 (745)
T KOG0301|consen  101 KSNVCSLSIGEDGT-LISGSWDSTAKVWR--IGELVYSLQGHTASVWAVASLPEN-TYVTGSADKTIKLWKGG-------  169 (745)
T ss_pred             ccceeeeecCCcCc-eEecccccceEEec--chhhhcccCCcchheeeeeecCCC-cEEeccCcceeeeccCC-------
Confidence            99999999888887 99999999999996  467777899999999999999977 79999999999999763       


Q ss_pred             ccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeee-cCcceeEEEECCCCCEEEEEeC
Q 014475          160 SQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYAGSR  238 (424)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~  238 (424)
                            ..++++.+|.+-|+.+++-++   ..|++++.||.|++|++ +++.+..+. |..-+.++...+++..+++++.
T Consensus       170 ------~~l~tf~gHtD~VRgL~vl~~---~~flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gE  239 (745)
T KOG0301|consen  170 ------TLLKTFSGHTDCVRGLAVLDD---SHFLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSISMALSDGLIVSTGE  239 (745)
T ss_pred             ------chhhhhccchhheeeeEEecC---CCeEeecCCceEEEEec-cCceeeeeeccceEEEEEEecCCCCeEEEecC
Confidence                  367889999999999999988   47999999999999999 566666655 9999999998899999999999


Q ss_pred             CCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecCCCEEEEeCCCCcEEEEeCCC
Q 014475          239 DGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTGDLLISGSEDGMVRVWDPIT  299 (424)
Q Consensus       239 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~t~~~dg~i~iwd~~~  299 (424)
                      |+++++|+...           +.+.+.-....|.++.+-++.-+++|+.||.||||....
T Consensus       240 DrtlriW~~~e-----------~~q~I~lPttsiWsa~~L~NgDIvvg~SDG~VrVfT~~k  289 (745)
T KOG0301|consen  240 DRTLRIWKKDE-----------CVQVITLPTTSIWSAKVLLNGDIVVGGSDGRVRVFTVDK  289 (745)
T ss_pred             CceEEEeecCc-----------eEEEEecCccceEEEEEeeCCCEEEeccCceEEEEEecc
Confidence            99999999873           344444344578888887766678888999999998763

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.96  E-value=8.5e-27  Score=206.93  Aligned_cols=319  Identities=18%  Similarity=0.178  Sum_probs=250.0

Q ss_pred             eEEEeecCCCCCceEEEeCCCCceE---------------------EEee-------CCCCCCCceEEecceeecCCCcc
Q 014475            2 ELLIASSSVADTGIGCWDLESGAEQ---------------------LRYK-------SCASPPHGLACVGQRFLASSQLR   53 (424)
Q Consensus         2 e~~lat~~~~dg~i~vwd~~~~~~~---------------------~~~~-------~~~~~~~~v~~~~~~~~~~~~~l   53 (424)
                      +.+||+++ +|..||||.+.-+...                     .++.       -..+|.+-|.++.  |+|.+..|
T Consensus       206 ~~~laS~S-QD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~--W~p~~~~L  282 (764)
T KOG1063|consen  206 DLLLASSS-QDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVW--WHPEGLDL  282 (764)
T ss_pred             cEEEEecC-CceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEE--Eccchhhh
Confidence            57999999 9999999997644311                     1111       1236788899999  99999999


Q ss_pred             ccCCCCceeEEEEECCCCcee----eee----cCCCCeeEEEECCCCCEEEEecCCCcEEEEEccCc---ceeeeecccc
Q 014475           54 EQPSASSGSILYWSWSKPQVE----VKS----LPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASG---RLLKKWHAHY  122 (424)
Q Consensus        54 ~~~~~~~g~i~vwd~~~~~~~----~~~----~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~---~~~~~~~~~~  122 (424)
                      ++++.| .++.+|.-++..-.    .+.    .........-|+|+++.+++-+..|..++|..+..   .....+.+|.
T Consensus       283 LSASaD-ksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~  361 (764)
T KOG1063|consen  283 LSASAD-KSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDKTFWTQEPVISGHV  361 (764)
T ss_pred             eecccC-cceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEEEEeccCccceeecccccccc
Confidence            999998 99999998765322    111    23456889999999999999999999999983332   2344567899


Q ss_pred             CCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEE
Q 014475          123 RAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCK  202 (424)
Q Consensus       123 ~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~  202 (424)
                      +.|..+.|+|.|.+|++.+.|-+-|+|-.-. .      ......+..-+-|.-.++|+++-+..  ..+++|...+.+|
T Consensus       362 ~~V~dv~W~psGeflLsvs~DQTTRlFa~wg-~------q~~wHEiaRPQiHGyDl~c~~~vn~~--~~FVSgAdEKVlR  432 (764)
T KOG1063|consen  362 DGVKDVDWDPSGEFLLSVSLDQTTRLFARWG-R------QQEWHEIARPQIHGYDLTCLSFVNED--LQFVSGADEKVLR  432 (764)
T ss_pred             ccceeeeecCCCCEEEEeccccceeeecccc-c------ccceeeecccccccccceeeehccCC--ceeeecccceeee
Confidence            9999999999999999999999999987641 1      11233444556788899999998854  7899999999999


Q ss_pred             EEecCC----------C----------------------cee--------------------------------------
Q 014475          203 VWSLLK----------G----------------------RLL--------------------------------------  212 (424)
Q Consensus       203 iwd~~~----------~----------------------~~~--------------------------------------  212 (424)
                      +|+...          +                      +..                                      
T Consensus       433 vF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~  512 (764)
T KOG1063|consen  433 VFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQN  512 (764)
T ss_pred             eecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHh
Confidence            998621          0                      000                                      


Q ss_pred             -------eeeecCcceeEEEECCCCCEEEEEeCCC-----cEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-
Q 014475          213 -------RNIVFPSVIDAIALDPAEHVFYAGSRDG-----SIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-  279 (424)
Q Consensus       213 -------~~~~~~~~i~~~~~~~~~~~l~~~~~dg-----~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-  279 (424)
                             +.+.|...|.+++.+|+++++++++...     .|++|+..+.         ..++.+.+|.-.|+.++|+| 
T Consensus       513 tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W---------~~~~~L~~HsLTVT~l~FSpd  583 (764)
T KOG1063|consen  513 TLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANW---------LQVQELEGHSLTVTRLAFSPD  583 (764)
T ss_pred             ccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccch---------hhhheecccceEEEEEEECCC
Confidence                   0001333789999999999999988653     5899999885         55668999999999999999 


Q ss_pred             CCEEEEeCCCCcEEEEeCCCCcE----EEEEeccCCCeeEEEEEecCceeeeccCCCceeeccCCCC
Q 014475          280 GDLLISGSEDGMVRVWDPITHNI----VRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGS  342 (424)
Q Consensus       280 ~~~l~t~~~dg~i~iwd~~~~~~----~~~~~~~~~~v~~l~~s~~~~~l~~~~~d~~i~iw~~~~~  342 (424)
                      +++|++.+.|.++.+|.......    ....+.|..-|+++.|+|++.+++|+|.|++|++|.....
T Consensus       584 g~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~  650 (764)
T KOG1063|consen  584 GRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDL  650 (764)
T ss_pred             CcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCc
Confidence            99999999999999998754321    2336789999999999999999999999999999998866

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.96  E-value=2.8e-27  Score=210.75  Aligned_cols=276  Identities=17%  Similarity=0.265  Sum_probs=222.9

Q ss_pred             EEEeecCCCCCceEEEeCCCCceEEEeeC----------------------------------CCCCCCceEEecceeec
Q 014475            3 LLIASSSVADTGIGCWDLESGAEQLRYKS----------------------------------CASPPHGLACVGQRFLA   48 (424)
Q Consensus         3 ~~lat~~~~dg~i~vwd~~~~~~~~~~~~----------------------------------~~~~~~~v~~~~~~~~~   48 (424)
                      -.+.|++ .|++|||||++.+..-..++.                                  .-.+..++.+++  .+|
T Consensus       393 ~cF~TCS-sD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~--vSp  469 (1080)
T KOG1408|consen  393 GCFTTCS-SDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALA--VSP  469 (1080)
T ss_pred             cceeEec-CCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEE--ECC
Confidence            3578999 999999999986432222110                                  012445688898  999


Q ss_pred             CCCccccCCCCceeEEEEECCCCcee-eeecCCCCeeEEEECC---CCCEEEEecCCCcEEEEEccCc-ceeeeeccccC
Q 014475           49 SSQLREQPSASSGSILYWSWSKPQVE-VKSLPAEPIKPIAANS---HGTYIAGGGQSGDIYMWEVASG-RLLKKWHAHYR  123 (424)
Q Consensus        49 ~~~~l~~~~~~~g~i~vwd~~~~~~~-~~~~~~~~v~~~~~s~---~~~~l~~~~~dg~v~iwd~~~~-~~~~~~~~~~~  123 (424)
                      +|++||++..- |+++||++...+.. ....|...|.|+.|+.   ..++||+++.|..|.|||+... .+++++.+|..
T Consensus       470 ~gqhLAsGDr~-GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSs  548 (1080)
T KOG1408|consen  470 DGQHLASGDRG-GNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSS  548 (1080)
T ss_pred             CcceecccCcc-CceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhccccc
Confidence            99999999887 99999999877655 4456999999999985   4678999999999999999644 67788999999


Q ss_pred             CeEEEEEccCC--cEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcE
Q 014475          124 AVTCLVFSEDG--SFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTC  201 (424)
Q Consensus       124 ~i~~~~~~~~~--~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v  201 (424)
                      .|+++.|..+|  ..+++++.|..|. |+......     ........+-...+..+.++++.|..  +++++++.|..|
T Consensus       549 sITsvKFa~~gln~~MiscGADksim-Fr~~qk~~-----~g~~f~r~t~t~~ktTlYDm~Vdp~~--k~v~t~cQDrni  620 (1080)
T KOG1408|consen  549 SITSVKFACNGLNRKMISCGADKSIM-FRVNQKAS-----SGRLFPRHTQTLSKTTLYDMAVDPTS--KLVVTVCQDRNI  620 (1080)
T ss_pred             ceeEEEEeecCCceEEEeccCchhhh-eehhcccc-----CceeccccccccccceEEEeeeCCCc--ceEEEEecccce
Confidence            99999998876  6789999997664 44322000     00011111122234578889998888  899999999999


Q ss_pred             EEEecCCCceeeeee----cCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEe
Q 014475          202 KVWSLLKGRLLRNIV----FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAY  277 (424)
Q Consensus       202 ~iwd~~~~~~~~~~~----~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  277 (424)
                      +|||+.+++..+.|+    +.+..-.+...|.|.++++.+.|.++.++|.-++         +++..+.+|...|+.+.|
T Consensus       621 rif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sg---------EcvA~m~GHsE~VTG~kF  691 (1080)
T KOG1408|consen  621 RIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSG---------ECVAQMTGHSEAVTGVKF  691 (1080)
T ss_pred             EEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccc---------hhhhhhcCcchheeeeee
Confidence            999999999999997    5577888999999999999999999999999997         778899999999999999


Q ss_pred             cC-CCEEEEeCCCCcEEEEeCCC
Q 014475          278 ST-GDLLISGSEDGMVRVWDPIT  299 (424)
Q Consensus       278 ~~-~~~l~t~~~dg~i~iwd~~~  299 (424)
                      .+ -+.|++.+.||.|.||.+..
T Consensus       692 ~nDCkHlISvsgDgCIFvW~lp~  714 (1080)
T KOG1408|consen  692 LNDCKHLISVSGDGCIFVWKLPL  714 (1080)
T ss_pred             cccchhheeecCCceEEEEECch
Confidence            99 88999999999999999754

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.96  E-value=1.4e-25  Score=198.68  Aligned_cols=271  Identities=12%  Similarity=0.124  Sum_probs=200.6

Q ss_pred             CccccCCCCceeEEEEECCCCceeeeecCCCCeeEEEECCCCCEE-EEecCCCcEEEEEccCcceeeeeccccCCeEEEE
Q 014475           51 QLREQPSASSGSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYI-AGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLV  129 (424)
Q Consensus        51 ~~l~~~~~~~g~i~vwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~  129 (424)
                      ..+++++.+ +.|++||..+++..........+.+++|+|+++.+ ++++.++.|++||..+++....+..+.. +..+.
T Consensus         2 ~~~~s~~~d-~~v~~~d~~t~~~~~~~~~~~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~~   79 (300)
T TIGR03866         2 KAYVSNEKD-NTISVIDTATLEVTRTFPVGQRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPD-PELFA   79 (300)
T ss_pred             cEEEEecCC-CEEEEEECCCCceEEEEECCCCCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCC-ccEEE
Confidence            345566666 99999999887765554444557889999999876 5667889999999999888777765443 57789


Q ss_pred             EccCCcEEEEe-eCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCC-cEEEEecC
Q 014475          130 FSEDGSFLISG-SEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDR-TCKVWSLL  207 (424)
Q Consensus       130 ~~~~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~-~v~iwd~~  207 (424)
                      |+|+++.++++ +.++.+++||+++.           ..+..+. +...+.+++|+|++  ..+++++.++ .+.+||.+
T Consensus        80 ~~~~g~~l~~~~~~~~~l~~~d~~~~-----------~~~~~~~-~~~~~~~~~~~~dg--~~l~~~~~~~~~~~~~d~~  145 (300)
T TIGR03866        80 LHPNGKILYIANEDDNLVTVIDIETR-----------KVLAEIP-VGVEPEGMAVSPDG--KIVVNTSETTNMAHFIDTK  145 (300)
T ss_pred             ECCCCCEEEEEcCCCCeEEEEECCCC-----------eEEeEee-CCCCcceEEECCCC--CEEEEEecCCCeEEEEeCC
Confidence            99999877554 56899999999652           2233333 22346789999988  7888877765 46778998


Q ss_pred             CCceeeeeecCcceeEEEECCCCCEEEEEe-CCCcEEEEEcCCCCCCCCCcCceeeeeecc-----c--CcCeEEEEecC
Q 014475          208 KGRLLRNIVFPSVIDAIALDPAEHVFYAGS-RDGSIYIAALNAESPSTSSYGMHIIGSLSD-----H--SKAVTCLAYST  279 (424)
Q Consensus       208 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~-----~--~~~i~~~~~~~  279 (424)
                      +++..........+..++|+|+++++++++ .++.+++||+++...         +..+..     +  ......++|+|
T Consensus       146 ~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~---------~~~~~~~~~~~~~~~~~~~~i~~s~  216 (300)
T TIGR03866       146 TYEIVDNVLVDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKV---------IKKITFEIPGVHPEAVQPVGIKLTK  216 (300)
T ss_pred             CCeEEEEEEcCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCccee---------eeeeeecccccccccCCccceEECC
Confidence            887776665556678899999999886554 689999999988632         222211     1  11234688999


Q ss_pred             -CCEEEE-eCCCCcEEEEeCCCCcEEEEEeccCCCeeEEEEEecCceeeec-cCCCceeeccCCCCCCCCC
Q 014475          280 -GDLLIS-GSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLG-SFSNPHTSSRRHGSQLPPP  347 (424)
Q Consensus       280 -~~~l~t-~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~-~~d~~i~iw~~~~~~~~~~  347 (424)
                       +++++. .+.++.+.+||+++++.+..+. +...+.+++|+|+|++|+++ +.++.|++||+.+.+....
T Consensus       217 dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~  286 (300)
T TIGR03866       217 DGKTAFVALGPANRVAVVDAKTYEVLDYLL-VGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKS  286 (300)
T ss_pred             CCCEEEEEcCCCCeEEEEECCCCcEEEEEE-eCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEE
Confidence             776444 4557789999999988877664 45678999999999999876 5799999999998765433

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=7.6e-28  Score=216.11  Aligned_cols=275  Identities=17%  Similarity=0.202  Sum_probs=219.0

Q ss_pred             eecCCCccccCCCCceeEEEEECCCCceeeeecC--------CCCeeEEEECC-CCCEEEEecCCCcEEEEEccC---cc
Q 014475           46 FLASSQLREQPSASSGSILYWSWSKPQVEVKSLP--------AEPIKPIAANS-HGTYIAGGGQSGDIYMWEVAS---GR  113 (424)
Q Consensus        46 ~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~~~~--------~~~v~~~~~s~-~~~~l~~~~~dg~v~iwd~~~---~~  113 (424)
                      ..++-..++.+|.  ..++|+.+..........+        .-.+..+.|+. +.++||+++..|.|.+||+..   .+
T Consensus        47 ~nr~~~qiv~AGr--s~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk  124 (839)
T KOG0269|consen   47 VNRDINQIVVAGR--SLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNK  124 (839)
T ss_pred             ecCCcceeEEecc--cceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEEecCccccch
Confidence            5677778888887  5888888765432221111        12455677775 578999999999999999987   56


Q ss_pred             eeeeeccccCCeEEEEEcc-CCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEE
Q 014475          114 LLKKWHAHYRAVTCLVFSE-DGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATI  192 (424)
Q Consensus       114 ~~~~~~~~~~~i~~~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l  192 (424)
                      .+..+..|...++++.|++ ...+|++|++||.|++||++.           .....++.+....|.++.|+|... +.|
T Consensus       125 ~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~-----------~~S~~t~~~nSESiRDV~fsp~~~-~~F  192 (839)
T KOG0269|consen  125 LLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRS-----------KKSKSTFRSNSESIRDVKFSPGYG-NKF  192 (839)
T ss_pred             hhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeec-----------ccccccccccchhhhceeeccCCC-ceE
Confidence            6778899999999999998 667899999999999999965           333455667888999999999864 899


Q ss_pred             EEEeCCCcEEEEecCCCc-eeeeee-cCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCc
Q 014475          193 VSASEDRTCKVWSLLKGR-LLRNIV-FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSK  270 (424)
Q Consensus       193 ~~~~~d~~v~iwd~~~~~-~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~  270 (424)
                      +++...|.+++||++... +...+. |.+++.++.|+|++.+||+|+.|+.|+|||+.....       ....++ ....
T Consensus       193 ~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~-------~~~~tI-nTia  264 (839)
T KOG0269|consen  193 ASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRA-------KPKHTI-NTIA  264 (839)
T ss_pred             EEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCc-------cceeEE-eecc
Confidence            999999999999998754 333343 999999999999999999999999999999987542       222222 2357


Q ss_pred             CeEEEEecC--CCEEEEeC--CCCcEEEEeCCCC-cEEEEEeccCCCeeEEEEEe-cCceeeeccCCCceeeccCCCC
Q 014475          271 AVTCLAYST--GDLLISGS--EDGMVRVWDPITH-NIVRMFRLAKGPVNNILVVR-RPLYLNLGSFSNPHTSSRRHGS  342 (424)
Q Consensus       271 ~i~~~~~~~--~~~l~t~~--~dg~i~iwd~~~~-~~~~~~~~~~~~v~~l~~s~-~~~~l~~~~~d~~i~iw~~~~~  342 (424)
                      +|.+++|-|  ...|++++  .|-.|+|||++.. -+..++..|...++.++|.. |...|.+++.||++..-..+..
T Consensus       265 pv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~qh~~kna  342 (839)
T KOG0269|consen  265 PVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVLQHLFKNA  342 (839)
T ss_pred             eeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccCccccceeccCCCceeeEeecCccHHHHhhhhcc
Confidence            899999999  66788876  5788999999865 45678889999999999976 5568899999999887666544

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.96  E-value=3.4e-26  Score=183.48  Aligned_cols=289  Identities=15%  Similarity=0.189  Sum_probs=217.3

Q ss_pred             EEEeecCCCCCceEEEeCCCCceE-------E-----EeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCC
Q 014475            3 LLIASSSVADTGIGCWDLESGAEQ-------L-----RYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSK   70 (424)
Q Consensus         3 ~~lat~~~~dg~i~vwd~~~~~~~-------~-----~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~   70 (424)
                      -|+++|+ .||.|.|||++.....       +     .-+...+|.-+|..+-  |-|-..-+++.++-|.+++|||..+
T Consensus        57 rymlSGg-adgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~--WyP~DtGmFtssSFDhtlKVWDtnT  133 (397)
T KOG4283|consen   57 RYMLSGG-ADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAI--WYPIDTGMFTSSSFDHTLKVWDTNT  133 (397)
T ss_pred             eEEeecC-CCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeE--EeeecCceeecccccceEEEeeccc
Confidence            4789999 9999999999864311       1     1122234556677776  8876665666655569999999999


Q ss_pred             CceeeeecCCCCeeEEEECCC---CCEEEEecCCCcEEEEEccCcceeeeeccccCCeEEEEEccCCcE-EEEeeCCCcE
Q 014475           71 PQVEVKSLPAEPIKPIAANSH---GTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSF-LISGSEDGCV  146 (424)
Q Consensus        71 ~~~~~~~~~~~~v~~~~~s~~---~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~-l~s~~~dg~i  146 (424)
                      .+.......++.|.+-++||-   ..++|+|..+-.|++-|+.+|..-.++.+|.+.|.++.|+|...+ |++|+.||.|
T Consensus       134 lQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~i  213 (397)
T KOG4283|consen  134 LQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAI  213 (397)
T ss_pred             ceeeEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEeccCceeEEEecCCCceE
Confidence            988888888999999999983   557888899999999999999999999999999999999997665 7799999999


Q ss_pred             EEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCc---ee-eeeecCccee
Q 014475          147 RIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGR---LL-RNIVFPSVID  222 (424)
Q Consensus       147 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~---~~-~~~~~~~~i~  222 (424)
                      ++||++..          .                                 |..++.|..+++   .+ ....|.+.++
T Consensus       214 rlWDiRra----------s---------------------------------gcf~~lD~hn~k~~p~~~~n~ah~gkvn  250 (397)
T KOG4283|consen  214 RLWDIRRA----------S---------------------------------GCFRVLDQHNTKRPPILKTNTAHYGKVN  250 (397)
T ss_pred             EEEEeecc----------c---------------------------------ceeEEeecccCccCccccccccccceee
Confidence            99999541          0                                 112222222211   11 2334788999


Q ss_pred             EEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecCCCEEEEeCCCCcEEEEeCCCCcE
Q 014475          223 AIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTGDLLISGSEDGMVRVWDPITHNI  302 (424)
Q Consensus       223 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~  302 (424)
                      .++|..++.++++.+.|.++++|+...+.....++....-..-. |. .+. +.-.....++---.++.+.++++-++..
T Consensus       251 gla~tSd~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~~~-~~-~~~-~~~~~s~vfv~~p~~~~lall~~~sgs~  327 (397)
T KOG4283|consen  251 GLAWTSDARYLASCGTDDRIRVWNMESGRNTLREFGPIIHNQTT-SF-AVH-IQSMDSDVFVLFPNDGSLALLNLLEGSF  327 (397)
T ss_pred             eeeecccchhhhhccCccceEEeecccCcccccccccccccccc-cc-eEE-EeecccceEEEEecCCeEEEEEccCceE
Confidence            99999999999999999999999999887544443322211111 11 111 2211133444444568999999999999


Q ss_pred             EEEEeccCCCeeEEEEEecCceeeeccCCCceeeccCC
Q 014475          303 VRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRH  340 (424)
Q Consensus       303 ~~~~~~~~~~v~~l~~s~~~~~l~~~~~d~~i~iw~~~  340 (424)
                      ++.+..|-..|.+.++.|+=+...+|+.|+.+..|...
T Consensus       328 ir~l~~h~k~i~c~~~~~~fq~~~tg~~d~ni~~w~p~  365 (397)
T KOG4283|consen  328 VRRLSTHLKRINCAAYRPDFEQCFTGDMNGNIYMWSPA  365 (397)
T ss_pred             EEeeecccceeeEEeecCchhhhhccccCCcccccccc
Confidence            99999998899999999999999999999999999873

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.96  E-value=6.5e-27  Score=205.82  Aligned_cols=321  Identities=17%  Similarity=0.270  Sum_probs=225.9

Q ss_pred             CeEEEeecCCCCCceEEEeCCCCceE---EEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCcee---
Q 014475            1 MELLIASSSVADTGIGCWDLESGAEQ---LRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVE---   74 (424)
Q Consensus         1 ~e~~lat~~~~dg~i~vwd~~~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~---   74 (424)
                      +|.+||.+. .||.|.++|.++..-.   +.|+....|.+.|..+.  |.|....|++++.| .++++||+...+..   
T Consensus        63 ~eHiLavad-E~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~--wapge~~lVsasGD-sT~r~Wdvk~s~l~G~~  138 (720)
T KOG0321|consen   63 KEHILAVAD-EDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLK--WAPGESLLVSASGD-STIRPWDVKTSRLVGGR  138 (720)
T ss_pred             ccceEEEec-CCCceeeecchhhhcchhhhhhcccccccceeEeec--cCCCceeEEEccCC-ceeeeeeeccceeecce
Confidence            578999999 9999999998754322   23555667788899998  99966677777777 99999999987765   


Q ss_pred             eeecCCCCeeEEEECC-CCCEEEEecCCCcEEEEEccCcc--------------------e-------eeeeccccCCeE
Q 014475           75 VKSLPAEPIKPIAANS-HGTYIAGGGQSGDIYMWEVASGR--------------------L-------LKKWHAHYRAVT  126 (424)
Q Consensus        75 ~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~v~iwd~~~~~--------------------~-------~~~~~~~~~~i~  126 (424)
                      ....|...|.+++|.| |...|++|+.||.|.|||++-..                    .       +.....+...|.
T Consensus       139 ~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~  218 (720)
T KOG0321|consen  139 LNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIF  218 (720)
T ss_pred             eecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCcee
Confidence            3467999999999999 56788999999999999996331                    0       111123444455


Q ss_pred             E---EEEccCCcEEEEeeC-CCcEEEEeCCcccchhcccccccceEEeecCC---cCceeEEEEEEcCceeEEEEEeCCC
Q 014475          127 C---LVFSEDGSFLISGSE-DGCVRIWSLLTVFEECESQRASHLYLHSFTGH---TLRITDIVIGYGGVSATIVSASEDR  199 (424)
Q Consensus       127 ~---~~~~~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~---~~~i~~~~~~~~~~~~~l~~~~~d~  199 (424)
                      +   +.+..|...|++++. |+.|++||+++.+.........   ...+..|   ...+.++.....|  .+|++.+.|+
T Consensus       219 ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~---~~~~~t~skrs~G~~nL~lDssG--t~L~AsCtD~  293 (720)
T KOG0321|consen  219 SSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRG---SDKYPTHSKRSVGQVNLILDSSG--TYLFASCTDN  293 (720)
T ss_pred             eeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCc---ccCccCcccceeeeEEEEecCCC--CeEEEEecCC
Confidence            5   555568889999888 9999999998865443322221   2222223   4456666666655  7888888899


Q ss_pred             cEEEEecCCCce--eeeeec---CcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEE
Q 014475          200 TCKVWSLLKGRL--LRNIVF---PSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTC  274 (424)
Q Consensus       200 ~v~iwd~~~~~~--~~~~~~---~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~  274 (424)
                      .|.+||+.+-..  +..+.+   ...-..-..+|++.++++|+.|...++|.+....        .....+.+|.-.|++
T Consensus       294 sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e--------~~~~~l~Ght~eVt~  365 (720)
T KOG0321|consen  294 SIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPE--------APPALLLGHTREVTT  365 (720)
T ss_pred             cEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCcc--------CChhhhhCcceEEEE
Confidence            999999986432  222221   1112233568999999999999999999999875        556678899999999


Q ss_pred             EEecC--CCEEEEeCCCCcEEEEeCCCCc--------------EEEEEeccCCCeeEEEEEecCceeeeccCCCceeecc
Q 014475          275 LAYST--GDLLISGSEDGMVRVWDPITHN--------------IVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSR  338 (424)
Q Consensus       275 ~~~~~--~~~l~t~~~dg~i~iwd~~~~~--------------~~~~~~~~~~~v~~l~~s~~~~~l~~~~~d~~i~iw~  338 (424)
                      ++|.|  -.-++++++|..+++|++..+-              ....+++|.-.+..+.++-.+.+..--  .+..++|.
T Consensus       366 V~w~pS~~t~v~TcSdD~~~kiW~l~~~l~e~~~adk~s~v~~~~~rfk~~~p~~~nv~ss~~~t~~~pR--~~~~r~~s  443 (720)
T KOG0321|consen  366 VRWLPSATTPVATCSDDFRVKIWRLSNGLEEIYAADKDSIVYEYSRRFKGHLPQVLNVNSSLRKTYKDPR--EGMNRISS  443 (720)
T ss_pred             EeeccccCCCceeeccCcceEEEeccCchhhccccccchhhhhhhhhhhccccccccccccccccccchh--hhcccccc
Confidence            99998  5567788999999999986542              223445555555555555433222221  34455554


Q ss_pred             CC
Q 014475          339 RH  340 (424)
Q Consensus       339 ~~  340 (424)
                      ..
T Consensus       444 sP  445 (720)
T KOG0321|consen  444 SP  445 (720)
T ss_pred             Cc
Confidence            43

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.95  E-value=1.1e-26  Score=216.55  Aligned_cols=259  Identities=21%  Similarity=0.277  Sum_probs=213.5

Q ss_pred             ecCCCCeeEEEECCCCCEEEEec--CCCcEEEEEccC------------cceeeeeccccCCeEEEEEccCCcEEEEeeC
Q 014475           77 SLPAEPIKPIAANSHGTYIAGGG--QSGDIYMWEVAS------------GRLLKKWHAHYRAVTCLVFSEDGSFLISGSE  142 (424)
Q Consensus        77 ~~~~~~v~~~~~s~~~~~l~~~~--~dg~v~iwd~~~------------~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~  142 (424)
                      ..++..|.+++.+|++..+|+|+  .||.++||+.+.            .+.+.....|.+.|+|+.|+|||++||+|+.
T Consensus        10 ~H~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSD   89 (942)
T KOG0973|consen   10 NHNEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSD   89 (942)
T ss_pred             ccCCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccC
Confidence            34566799999999999999999  899999998742            1334556789999999999999999999999


Q ss_pred             CCcEEEEeCCcc--cc-----hhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeee
Q 014475          143 DGCVRIWSLLTV--FE-----ECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNI  215 (424)
Q Consensus       143 dg~i~iwd~~~~--~~-----~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~  215 (424)
                      |+.|.+|.....  ..     .........+....+.+|...|.+++|+|++  .++++++.|++|.+||.++.+.+..+
T Consensus        90 D~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~--~~lvS~s~DnsViiwn~~tF~~~~vl  167 (942)
T KOG0973|consen   90 DRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDD--SLLVSVSLDNSVIIWNAKTFELLKVL  167 (942)
T ss_pred             cceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCc--cEEEEecccceEEEEccccceeeeee
Confidence            999999998731  00     1122234556778889999999999999988  99999999999999999999988888


Q ss_pred             e-cCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecc------cCcCeEEEEecC-CCEEEEeC
Q 014475          216 V-FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSD------HSKAVTCLAYST-GDLLISGS  287 (424)
Q Consensus       216 ~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~------~~~~i~~~~~~~-~~~l~t~~  287 (424)
                      . |...|..+.|+|-|++|++-+.|++|++|++.+-         .....+..      -......+.|+| |.+|++..
T Consensus       168 ~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw---------~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~n  238 (942)
T KOG0973|consen  168 RGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDW---------GIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPN  238 (942)
T ss_pred             ecccccccceEECCccCeeeeecCCceEEEEEcccc---------eeeEeeccchhhCCCcceeeecccCCCcCeecchh
Confidence            8 9999999999999999999999999999997663         22222222      234578899999 99999874


Q ss_pred             C----CCcEEEEeCCCCcEEEEEeccCCCeeEEEEEe-----cCc------------eeeeccCCCceeeccCCCCCCCC
Q 014475          288 E----DGMVRVWDPITHNIVRMFRLAKGPVNNILVVR-----RPL------------YLNLGSFSNPHTSSRRHGSQLPP  346 (424)
Q Consensus       288 ~----dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~-----~~~------------~l~~~~~d~~i~iw~~~~~~~~~  346 (424)
                      .    -.++.|.+-.+.+.-..+-+|.+++.++.|+|     ..+            .+|+||.|++|-+|.....++.-
T Consensus       239 A~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~  318 (942)
T KOG0973|consen  239 AVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLF  318 (942)
T ss_pred             hccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchh
Confidence            2    34689999888888899999999999999997     111            57899999999999997665543

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.95  E-value=4.8e-25  Score=189.07  Aligned_cols=324  Identities=17%  Similarity=0.201  Sum_probs=248.9

Q ss_pred             EEEeecCCCCCceEEEeCCCCceEEEeeCCCCCC-CceEEecceeecCCCccccCCCCceeEEEEECCCCceee-eecCC
Q 014475            3 LLIASSSVADTGIGCWDLESGAEQLRYKSCASPP-HGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEV-KSLPA   80 (424)
Q Consensus         3 ~~lat~~~~dg~i~vwd~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~-~~~~~   80 (424)
                      +++++.+  .|.+..|+.+.+...++......+. .-|.|+.  |.++|+. +++.++ |.|.||+..+.+... ...|.
T Consensus       214 nliit~G--k~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~--F~engdv-iTgDS~-G~i~Iw~~~~~~~~k~~~aH~  287 (626)
T KOG2106|consen  214 NLIITCG--KGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVT--FLENGDV-ITGDSG-GNILIWSKGTNRISKQVHAHD  287 (626)
T ss_pred             cEEEEeC--CceEEEEEccCCceEEEeeccccccceEEEEEE--EcCCCCE-EeecCC-ceEEEEeCCCceEEeEeeecC
Confidence            5677777  6899999999988877643333222 5688888  9999984 566665 999999997766542 23799


Q ss_pred             CCeeEEEECCCCCEEEEecCCCcEEEEEccCccee-----------------------------------------eeec
Q 014475           81 EPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLL-----------------------------------------KKWH  119 (424)
Q Consensus        81 ~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~-----------------------------------------~~~~  119 (424)
                      +.|.+++.-.+|.+|- |+.|..|..||-. -+.+                                         ....
T Consensus       288 ggv~~L~~lr~GtllS-GgKDRki~~Wd~~-y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~  365 (626)
T KOG2106|consen  288 GGVFSLCMLRDGTLLS-GGKDRKIILWDDN-YRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQ  365 (626)
T ss_pred             CceEEEEEecCccEee-cCccceEEecccc-ccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEE
Confidence            9999999999998665 9999999999832 1100                                         0123


Q ss_pred             cccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCC
Q 014475          120 AHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDR  199 (424)
Q Consensus       120 ~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~  199 (424)
                      +|......++.+|+.+++++++.|+.+++|+-.           +....+   .-..+..++.|+|.+   .++.|+..|
T Consensus       366 gh~delwgla~hps~~q~~T~gqdk~v~lW~~~-----------k~~wt~---~~~d~~~~~~fhpsg---~va~Gt~~G  428 (626)
T KOG2106|consen  366 GHGDELWGLATHPSKNQLLTCGQDKHVRLWNDH-----------KLEWTK---IIEDPAECADFHPSG---VVAVGTATG  428 (626)
T ss_pred             ecccceeeEEcCCChhheeeccCcceEEEccCC-----------ceeEEE---EecCceeEeeccCcc---eEEEeeccc
Confidence            677888899999999999999999999999931           122221   234678899999985   899999999


Q ss_pred             cEEEEecCCCceeeeeecCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC
Q 014475          200 TCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST  279 (424)
Q Consensus       200 ~v~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  279 (424)
                      ...+.|.++...+.......+++++.++|+|.+||+|+.|+.|++|.+.....       +....-+-+..+|+.+.|++
T Consensus       429 ~w~V~d~e~~~lv~~~~d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~-------~y~r~~k~~gs~ithLDwS~  501 (626)
T KOG2106|consen  429 RWFVLDTETQDLVTIHTDNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGR-------KYSRVGKCSGSPITHLDWSS  501 (626)
T ss_pred             eEEEEecccceeEEEEecCCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCc-------EEEEeeeecCceeEEeeecC
Confidence            99999999977776666789999999999999999999999999999987642       22222233448999999999


Q ss_pred             -CCEEEEeCCCCcEEEEeCCCCcEEEEEe------------------ccCCCeeEEEEEecCceeeeccCCCceeeccCC
Q 014475          280 -GDLLISGSEDGMVRVWDPITHNIVRMFR------------------LAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRH  340 (424)
Q Consensus       280 -~~~l~t~~~dg~i~iwd~~~~~~~~~~~------------------~~~~~v~~l~~s~~~~~l~~~~~d~~i~iw~~~  340 (424)
                       ++++.+-+.|-.|..|....-+.+...+                  .+...|..++-+.+.+++|+|.+.|.|+++..+
T Consensus       502 Ds~~~~~~S~d~eiLyW~~~~~~~~ts~kDvkW~t~~c~lGF~v~g~s~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~yP  581 (626)
T KOG2106|consen  502 DSQFLVSNSGDYEILYWKPSECKQITSVKDVKWATYTCTLGFEVFGGSDGTDINAVARSHCEKLLASGDDFGKVHLFSYP  581 (626)
T ss_pred             CCceEEeccCceEEEEEccccCcccceecceeeeeeEEEEEEEEecccCCchHHHhhhhhhhhhhhccccCceEEEEccc
Confidence             9999999999999999544322221111                  344467778888899999999999999999999


Q ss_pred             CCCCCCCccccccccccc
Q 014475          341 GSQLPPPLDKYVTSADED  358 (424)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~  358 (424)
                      -.++..+..++.....-.
T Consensus       582 c~s~rA~~he~~ghs~~v  599 (626)
T KOG2106|consen  582 CSSPRAPSHEYGGHSSHV  599 (626)
T ss_pred             cCCCcccceeecccccee
Confidence            777777766665555433

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.95  E-value=5e-27  Score=206.54  Aligned_cols=123  Identities=15%  Similarity=0.200  Sum_probs=109.9

Q ss_pred             ceeEEEECC-CCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC--CCEEEEeCCCCcEEEEe
Q 014475          220 VIDAIALDP-AEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST--GDLLISGSEDGMVRVWD  296 (424)
Q Consensus       220 ~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~l~t~~~dg~i~iwd  296 (424)
                      .|+.+.|+| |...|++++.||.|++|.+..+......  ..+-..+..|...|+++.|+|  .+.|++++.|.+|++||
T Consensus       629 ~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~--~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWD  706 (1012)
T KOG1445|consen  629 LVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENE--MTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWD  706 (1012)
T ss_pred             eeeecccCCCChHHeeecccCceEEEEEeccCCCCccc--CCcceeeecccceEEEEEecchhhhHhhhhhccceeeeee
Confidence            577889999 7788999999999999999887543332  245567888999999999999  89999999999999999


Q ss_pred             CCCCcEEEEEeccCCCeeEEEEEecCceeeeccCCCceeeccCCCCCC
Q 014475          297 PITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGSQL  344 (424)
Q Consensus       297 ~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~d~~i~iw~~~~~~~  344 (424)
                      +.+++....+.+|.+.|..++|||||+.+|+.+.||++++++.+..+.
T Consensus       707 l~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~  754 (1012)
T KOG1445|consen  707 LANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQ  754 (1012)
T ss_pred             hhhhhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCC
Confidence            999999999999999999999999999999999999999999886643

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.95  E-value=2.5e-28  Score=217.58  Aligned_cols=246  Identities=20%  Similarity=0.350  Sum_probs=220.2

Q ss_pred             eeEEEEECCCCceeeeecCCCCeeEEEECCCCCEEEEecCCCcEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEe
Q 014475           61 GSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISG  140 (424)
Q Consensus        61 g~i~vwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~  140 (424)
                      -.+++|+.+..     ..|...|.++..-..++.+++|+.|-.+.+|.+..-..+..+.+|..+|.++.|+++..+|++|
T Consensus        14 t~Lr~~~~~~~-----~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~Llaag   88 (825)
T KOG0267|consen   14 TKLRVWDTREF-----VAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLAAG   88 (825)
T ss_pred             eccccccchhh-----hhhhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceeeecCcchhhhccc
Confidence            56667775432     3467788888887788999999999999999998888888899999999999999999999999


Q ss_pred             eCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeee-cCc
Q 014475          141 SEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-FPS  219 (424)
Q Consensus       141 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~-~~~  219 (424)
                      +.+|+|++||++.           ...++++.+|...+.++.|+|-+  .+++.|+.|+.+++||++...+...+. |..
T Consensus        89 sasgtiK~wDlee-----------Ak~vrtLtgh~~~~~sv~f~P~~--~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~  155 (825)
T KOG0267|consen   89 SASGTIKVWDLEE-----------AKIVRTLTGHLLNITSVDFHPYG--EFFASGSTDTDLKIWDIRKKGCSHTYKSHTR  155 (825)
T ss_pred             ccCCceeeeehhh-----------hhhhhhhhccccCcceeeeccce--EEeccccccccceehhhhccCceeeecCCcc
Confidence            9999999999954           44567899999999999999998  889999999999999999887888777 888


Q ss_pred             ceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCC
Q 014475          220 VIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPI  298 (424)
Q Consensus       220 ~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~  298 (424)
                      .+..+.|+|+|++++.|+.|..+++||...+         +....+..|.+.+..+.|+| .-++++|+.|+++++||++
T Consensus       156 vv~~l~lsP~Gr~v~~g~ed~tvki~d~~ag---------k~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dle  226 (825)
T KOG0267|consen  156 VVDVLRLSPDGRWVASGGEDNTVKIWDLTAG---------KLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLE  226 (825)
T ss_pred             eeEEEeecCCCceeeccCCcceeeeeccccc---------ccccccccccccccccccCchhhhhccCCCCceeeeeccc
Confidence            8999999999999999999999999999987         66788999999999999999 8889999999999999999


Q ss_pred             CCcEEEEEeccCCCeeEEEEEecCceeeeccCCCc
Q 014475          299 THNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNP  333 (424)
Q Consensus       299 ~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~d~~  333 (424)
                      +.+.+.........|.++.|+|++..+++|-.+..
T Consensus       227 tfe~I~s~~~~~~~v~~~~fn~~~~~~~~G~q~sl  261 (825)
T KOG0267|consen  227 TFEVISSGKPETDGVRSLAFNPDGKIVLSGEQISL  261 (825)
T ss_pred             eeEEeeccCCccCCceeeeecCCceeeecCchhhh
Confidence            99999998888899999999999999888865543

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.95  E-value=1.4e-24  Score=167.91  Aligned_cols=272  Identities=17%  Similarity=0.291  Sum_probs=214.7

Q ss_pred             EEeecCCCCCceEEEeCCC------Cc------eEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCC
Q 014475            4 LIASSSVADTGIGCWDLES------GA------EQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKP   71 (424)
Q Consensus         4 ~lat~~~~dg~i~vwd~~~------~~------~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~   71 (424)
                      +.|.|+ ..++.+|.....      +.      +...++...-|...|.|.+  |+|.|+++++++.| ++|++..++..
T Consensus        46 lyavgs-nskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~--ws~~geliatgsnd-k~ik~l~fn~d  121 (350)
T KOG0641|consen   46 LYAVGS-NSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTA--WSPCGELIATGSND-KTIKVLPFNAD  121 (350)
T ss_pred             eEEecc-CCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEE--ecCccCeEEecCCC-ceEEEEecccc
Confidence            467788 888888876432      11      1112233344667899999  99999999999998 99999887654


Q ss_pred             ce------eeeecCCCCeeEEEECCC----CCEEEEec-CCCcEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEe
Q 014475           72 QV------EVKSLPAEPIKPIAANSH----GTYIAGGG-QSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISG  140 (424)
Q Consensus        72 ~~------~~~~~~~~~v~~~~~s~~----~~~l~~~~-~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~  140 (424)
                      ..      .....|.+.|..++|-.+    +.+|++++ .|..|++-|..+|+....+.+|.+.|.++- +-++-++++|
T Consensus       122 t~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sghtghilaly-swn~~m~~sg  200 (350)
T KOG0641|consen  122 TCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGHTGHILALY-SWNGAMFASG  200 (350)
T ss_pred             cccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCCcccEEEEE-EecCcEEEcc
Confidence            32      233458899999999643    56777765 466788889999999999999999998864 2358899999


Q ss_pred             eCCCcEEEEeCCcccchhcccccccceEEeec----C---CcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceee
Q 014475          141 SEDGCVRIWSLLTVFEECESQRASHLYLHSFT----G---HTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLR  213 (424)
Q Consensus       141 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~----~---~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~  213 (424)
                      +.|.+|++||++-.           ..+.++.    .   ..+.|.++++.|.+  ++|++|-.|....+||++.+++++
T Consensus       201 sqdktirfwdlrv~-----------~~v~~l~~~~~~~glessavaav~vdpsg--rll~sg~~dssc~lydirg~r~iq  267 (350)
T KOG0641|consen  201 SQDKTIRFWDLRVN-----------SCVNTLDNDFHDGGLESSAVAAVAVDPSG--RLLASGHADSSCMLYDIRGGRMIQ  267 (350)
T ss_pred             CCCceEEEEeeecc-----------ceeeeccCcccCCCcccceeEEEEECCCc--ceeeeccCCCceEEEEeeCCceee
Confidence            99999999999642           2222221    1   23678999999998  999999999999999999999999


Q ss_pred             eee-cCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCCCc
Q 014475          214 NIV-FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGM  291 (424)
Q Consensus       214 ~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~  291 (424)
                      .+. |...|.++.|+|...++++++.|..|++-|++......     -++.....|...+..+.|+| .-.+++.+.|.+
T Consensus       268 ~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~e-----l~~~vv~ehkdk~i~~rwh~~d~sfisssadkt  342 (350)
T KOG0641|consen  268 RFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHE-----LPIMVVAEHKDKAIQCRWHPQDFSFISSSADKT  342 (350)
T ss_pred             eeCCCccceeEEEeCCCceEEEEecccceEEEeecccchhhc-----CceEEEEeccCceEEEEecCccceeeeccCcce
Confidence            887 88999999999999999999999999999998743111     23445567999999999999 778899999999


Q ss_pred             EEEEeCC
Q 014475          292 VRVWDPI  298 (424)
Q Consensus       292 i~iwd~~  298 (424)
                      +.+|-+.
T Consensus       343 ~tlwa~~  349 (350)
T KOG0641|consen  343 ATLWALN  349 (350)
T ss_pred             EEEeccC
Confidence            9999764

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.95  E-value=7e-26  Score=207.36  Aligned_cols=273  Identities=17%  Similarity=0.215  Sum_probs=223.3

Q ss_pred             CCCCceEEecceeecCCCccccCCCCceeEEEEECCCC-ceeeeec-CCCCeeEEEECCCCCEEEEecCCCcEEEEEccC
Q 014475           34 SPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKP-QVEVKSL-PAEPIKPIAANSHGTYIAGGGQSGDIYMWEVAS  111 (424)
Q Consensus        34 ~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~-~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~  111 (424)
                      .|..+.+.++  |.|+|..+.+++.+ |.|++|+.... +...... +...|.+++..  +.+|++|+.+++|.+|.+.+
T Consensus        11 aht~G~t~i~--~d~~gefi~tcgsd-g~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~--s~~f~~~s~~~tv~~y~fps   85 (933)
T KOG1274|consen   11 AHTGGLTLIC--YDPDGEFICTCGSD-GDIRKWKTNSDEEEPETIDISGELVSSIACY--SNHFLTGSEQNTVLRYKFPS   85 (933)
T ss_pred             hccCceEEEE--EcCCCCEEEEecCC-CceEEeecCCcccCCchhhccCceeEEEeec--ccceEEeeccceEEEeeCCC
Confidence            3556677888  99999999999998 99999998765 3322222 77788888765  55899999999999999999


Q ss_pred             cceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeE
Q 014475          112 GRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSAT  191 (424)
Q Consensus       112 ~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~  191 (424)
                      ++.-..+....-++++++|+.+|++++.||.|-.|++-++.+           ......+.+|..+|.++.++|.+  ++
T Consensus        86 ~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D-----------~s~~~~lrgh~apVl~l~~~p~~--~f  152 (933)
T KOG1274|consen   86 GEEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDD-----------SSQEKVLRGHDAPVLQLSYDPKG--NF  152 (933)
T ss_pred             CCccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccc-----------cchheeecccCCceeeeeEcCCC--CE
Confidence            887777777778999999999999999999999999999955           33456789999999999999999  99


Q ss_pred             EEEEeCCCcEEEEecCCCceeeeee---------cCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceee
Q 014475          192 IVSASEDRTCKVWSLLKGRLLRNIV---------FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHII  262 (424)
Q Consensus       192 l~~~~~d~~v~iwd~~~~~~~~~~~---------~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~  262 (424)
                      |++.+.||.|++||+.++.+...+.         ....+..++|+|++..+++...|+.|.+|+.....         ..
T Consensus       153 LAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we---------~~  223 (933)
T KOG1274|consen  153 LAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWE---------LQ  223 (933)
T ss_pred             EEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCce---------eh
Confidence            9999999999999999988776664         13456788999999999999999999999998864         33


Q ss_pred             eeec--ccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCCCcEEEEEeccCCCeeEEEEEecCceeeeccCCCceeec
Q 014475          263 GSLS--DHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSS  337 (424)
Q Consensus       263 ~~~~--~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~d~~i~iw  337 (424)
                      ..+.  .+...+..++|+| |.|||+++.||.|.|||..+-..    ......|.+++|.|+..-|-.-...|...+|
T Consensus       224 f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~~----~~~~~~Vc~~aw~p~~n~it~~~~~g~~~~~  297 (933)
T KOG1274|consen  224 FKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDTHER----HEFKRAVCCEAWKPNANAITLITALGTLGVS  297 (933)
T ss_pred             eeecccccccceEEEEEcCCCcEEeeeccCCcEEEEecccchh----ccccceeEEEecCCCCCeeEEEeeccccccC
Confidence            3332  3445599999999 99999999999999999998222    2234689999999998877655555554444

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.95  E-value=1.6e-26  Score=180.45  Aligned_cols=232  Identities=18%  Similarity=0.268  Sum_probs=185.9

Q ss_pred             EEEeecCCCCCceEEEeCCCCce---EEEeeCCCCCCCceEEecceeec--CCCccccCCCCceeEEEEECCCCcee---
Q 014475            3 LLIASSSVADTGIGCWDLESGAE---QLRYKSCASPPHGLACVGQRFLA--SSQLREQPSASSGSILYWSWSKPQVE---   74 (424)
Q Consensus         3 ~~lat~~~~dg~i~vwd~~~~~~---~~~~~~~~~~~~~v~~~~~~~~~--~~~~l~~~~~~~g~i~vwd~~~~~~~---   74 (424)
                      .+|||++ .|++|+|+.++....   +.++.+|.   .+|.-++  |..  .|..||+++.| |.|.||.-++++..   
T Consensus        24 krlATcs-SD~tVkIf~v~~n~~s~ll~~L~Gh~---GPVwqv~--wahPk~G~iLAScsYD-gkVIiWke~~g~w~k~~   96 (299)
T KOG1332|consen   24 KRLATCS-SDGTVKIFEVRNNGQSKLLAELTGHS---GPVWKVA--WAHPKFGTILASCSYD-GKVIIWKEENGRWTKAY   96 (299)
T ss_pred             ceeeeec-CCccEEEEEEcCCCCceeeeEecCCC---CCeeEEe--ecccccCcEeeEeecC-ceEEEEecCCCchhhhh
Confidence            5799999 999999999987654   55566555   5566666  665  79999999998 99999998887543   


Q ss_pred             eeecCCCCeeEEEECCC--CCEEEEecCCCcEEEEEccCc---ceeeeeccccCCeEEEEEccC---C-----------c
Q 014475           75 VKSLPAEPIKPIAANSH--GTYIAGGGQSGDIYMWEVASG---RLLKKWHAHYRAVTCLVFSED---G-----------S  135 (424)
Q Consensus        75 ~~~~~~~~v~~~~~s~~--~~~l~~~~~dg~v~iwd~~~~---~~~~~~~~~~~~i~~~~~~~~---~-----------~  135 (424)
                      ....|...|++++|.|.  |-.|++++.||.|.|.+.++.   ...+....|.-.|++++|.|-   |           +
T Consensus        97 e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~k  176 (299)
T KOG1332|consen   97 EHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVK  176 (299)
T ss_pred             hhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCcccccc
Confidence            33457899999999995  778999999999999998755   223445789999999999984   4           5


Q ss_pred             EEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcC--ceeEEEEEeCCCcEEEEecCCCce--
Q 014475          136 FLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGG--VSATIVSASEDRTCKVWSLLKGRL--  211 (424)
Q Consensus       136 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~~~l~~~~~d~~v~iwd~~~~~~--  211 (424)
                      .|++|+.|..|+||+..+         ........+.+|.+.|++++|.|.-  ....|++++.||++.||..+....  
T Consensus       177 rlvSgGcDn~VkiW~~~~---------~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~w  247 (299)
T KOG1332|consen  177 RLVSGGCDNLVKIWKFDS---------DSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPW  247 (299)
T ss_pred             eeeccCCccceeeeecCC---------cchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCcc
Confidence            699999999999999976         3344455689999999999999863  226799999999999998763211  


Q ss_pred             eeee--ecCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCC
Q 014475          212 LRNI--VFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAE  250 (424)
Q Consensus       212 ~~~~--~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  250 (424)
                      ..++  ..+..+..+.|++.|+.|++++.|+.+.+|.-+..
T Consensus       248 k~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~~~  288 (299)
T KOG1332|consen  248 KKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKENVD  288 (299)
T ss_pred             cccccccCCcceEEEEEeccccEEEEecCCcEEEEEEeCCC
Confidence            1111  16788999999999999999999999999976554

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.95  E-value=1.2e-25  Score=181.96  Aligned_cols=290  Identities=12%  Similarity=0.113  Sum_probs=217.2

Q ss_pred             eEEecceeecCCCccccCCCCceeEEEEECCCCcee-eeecCCCCeeEEEECCCCCEEEEecCCCcEEEEEccCcceeee
Q 014475           39 LACVGQRFLASSQLREQPSASSGSILYWSWSKPQVE-VKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKK  117 (424)
Q Consensus        39 v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~  117 (424)
                      ..|+.  |++.|.+||+|+.+ |.|.+||+.+..+. ....|..+|.+++||+||+.|++++.|..|.+||+..|.+++.
T Consensus        26 a~~~~--Fs~~G~~lAvGc~n-G~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~r  102 (405)
T KOG1273|consen   26 AECCQ--FSRWGDYLAVGCAN-GRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKR  102 (405)
T ss_pred             cceEE--eccCcceeeeeccC-CcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeE
Confidence            56666  99999999999998 99999999987754 4467899999999999999999999999999999999999888


Q ss_pred             eccccCCeEEEEEccC-CcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecC--CcCceeEEEEEEcCceeEEEE
Q 014475          118 WHAHYRAVTCLVFSED-GSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTG--HTLRITDIVIGYGGVSATIVS  194 (424)
Q Consensus       118 ~~~~~~~i~~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~~~l~~  194 (424)
                      ++ ..++|+...|+|. .+.+++.-.+..-.+-++....         ...+..-..  -.....+..|.+.|  +++++
T Consensus       103 ir-f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~---------h~~Lp~d~d~dln~sas~~~fdr~g--~yIit  170 (405)
T KOG1273|consen  103 IR-FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPK---------HSVLPKDDDGDLNSSASHGVFDRRG--KYIIT  170 (405)
T ss_pred             EE-ccCccceeeeccccCCeEEEEEecCCcEEEEecCCc---------eeeccCCCccccccccccccccCCC--CEEEE
Confidence            87 6789999999993 3334433334445555553311         111110000  11111222466666  99999


Q ss_pred             EeCCCcEEEEecCCCceeeeeec--CcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecc--cCc
Q 014475          195 ASEDRTCKVWSLLKGRLLRNIVF--PSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSD--HSK  270 (424)
Q Consensus       195 ~~~d~~v~iwd~~~~~~~~~~~~--~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~--~~~  270 (424)
                      |...|.+.++|..+.+++..+..  ...|..+.++..|+.|++-+.|..|+.|+++.-..........+...++.  ...
T Consensus       171 GtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~  250 (405)
T KOG1273|consen  171 GTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKL  250 (405)
T ss_pred             ecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhh
Confidence            99999999999999999988873  36899999999999999999999999999875322211111122222221  123


Q ss_pred             CeEEEEecC-CCEEEEeCC-CCcEEEEeCCCCcEEEEEeccC-CCeeEEEEEecCceeeeccCCCceeeccCCCCCC
Q 014475          271 AVTCLAYST-GDLLISGSE-DGMVRVWDPITHNIVRMFRLAK-GPVNNILVVRRPLYLNLGSFSNPHTSSRRHGSQL  344 (424)
Q Consensus       271 ~i~~~~~~~-~~~l~t~~~-dg~i~iwd~~~~~~~~~~~~~~-~~v~~l~~s~~~~~l~~~~~d~~i~iw~~~~~~~  344 (424)
                      .=.+++|+. |.+++.++. -..++||....|.+++.+.+.. .....+.|+|-...+++- ..|.+++|.....+.
T Consensus       251 ~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~i~si-~sg~v~iw~~~~~en  326 (405)
T KOG1273|consen  251 QWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPIIASI-ASGVVYIWAVVQVEN  326 (405)
T ss_pred             hhhheeecCCccEEEeccccceeEEEEecCCcceeeeecCCchhheeecccccceeeeeec-cCCceEEEEeecccc
Confidence            345677888 888888874 4569999999999999999888 467889999998888887 789999999875443

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.95  E-value=3.1e-26  Score=196.30  Aligned_cols=264  Identities=16%  Similarity=0.242  Sum_probs=217.1

Q ss_pred             EEeecCCCCCceEEEeCCCC---ceEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCceeeeecC-
Q 014475            4 LIASSSVADTGIGCWDLESG---AEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSLP-   79 (424)
Q Consensus         4 ~lat~~~~dg~i~vwd~~~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~~~~-   79 (424)
                      .+.||+  .|-|+|||+...   ..+..+. +....+.+..+.  .+|||+.|+++|.- .++.|||+..+...++... 
T Consensus       433 hVyTgG--kgcVKVWdis~pg~k~PvsqLd-cl~rdnyiRSck--L~pdgrtLivGGea-stlsiWDLAapTprikaelt  506 (705)
T KOG0639|consen  433 HVYTGG--KGCVKVWDISQPGNKSPVSQLD-CLNRDNYIRSCK--LLPDGRTLIVGGEA-STLSIWDLAAPTPRIKAELT  506 (705)
T ss_pred             eeEecC--CCeEEEeeccCCCCCCcccccc-ccCcccceeeeE--ecCCCceEEecccc-ceeeeeeccCCCcchhhhcC
Confidence            456777  688999998643   2233332 333556677777  99999999999996 9999999998876655432 


Q ss_pred             --CCCeeEEEECCCCCEEEEecCCCcEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccch
Q 014475           80 --AEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEE  157 (424)
Q Consensus        80 --~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~  157 (424)
                        .-.+.+++.+||.+..+++..||.|.|||+.+...++.+++|.+.+.||..+++|..|-+|+-|.+|+.||++++.+.
T Consensus       507 ssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrql  586 (705)
T KOG0639|consen  507 SSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQL  586 (705)
T ss_pred             CcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhh
Confidence              346889999999999999999999999999999999999999999999999999999999999999999999774321


Q ss_pred             hcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeeecCcceeEEEECCCCCEEEEEe
Q 014475          158 CESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGS  237 (424)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  237 (424)
                      .+            ....+.|.++-.+|.+  .+++.|-+++.+.+......+......|...|.++.|.+.|+++++.+
T Consensus       587 qq------------hdF~SQIfSLg~cP~~--dWlavGMens~vevlh~skp~kyqlhlheScVLSlKFa~cGkwfvStG  652 (705)
T KOG0639|consen  587 QQ------------HDFSSQIFSLGYCPTG--DWLAVGMENSNVEVLHTSKPEKYQLHLHESCVLSLKFAYCGKWFVSTG  652 (705)
T ss_pred             hh------------hhhhhhheecccCCCc--cceeeecccCcEEEEecCCccceeecccccEEEEEEecccCceeeecC
Confidence            11            1235688899999998  899999999999999877666555555899999999999999999999


Q ss_pred             CCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeC
Q 014475          238 RDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDP  297 (424)
Q Consensus       238 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~  297 (424)
                      .|+.+-.|....+.         .+...+ ....|.++.++. +++++||+.|....+|.+
T Consensus       653 kDnlLnawrtPyGa---------siFqsk-E~SsVlsCDIS~ddkyIVTGSGdkkATVYeV  703 (705)
T KOG0639|consen  653 KDNLLNAWRTPYGA---------SIFQSK-ESSSVLSCDISFDDKYIVTGSGDKKATVYEV  703 (705)
T ss_pred             chhhhhhccCcccc---------ceeecc-ccCcceeeeeccCceEEEecCCCcceEEEEE
Confidence            99999999998874         222222 456789999888 999999999988888864

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.95  E-value=1.5e-24  Score=192.39  Aligned_cols=278  Identities=19%  Similarity=0.243  Sum_probs=218.4

Q ss_pred             EEEeecCCCCCceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCceeeeec-CCC
Q 014475            3 LLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSL-PAE   81 (424)
Q Consensus         3 ~~lat~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~~~-~~~   81 (424)
                      ..||.+. .||.|.+||+..+-..... -+....+.+..++  |.+ +..|.+.+.+ |.|.-||+.+.+...... ..+
T Consensus        38 ~~lAvsR-t~g~IEiwN~~~~w~~~~v-i~g~~drsIE~L~--W~e-~~RLFS~g~s-g~i~EwDl~~lk~~~~~d~~gg  111 (691)
T KOG2048|consen   38 NQLAVSR-TDGNIEIWNLSNNWFLEPV-IHGPEDRSIESLA--WAE-GGRLFSSGLS-GSITEWDLHTLKQKYNIDSNGG  111 (691)
T ss_pred             Cceeeec-cCCcEEEEccCCCceeeEE-EecCCCCceeeEE--Ecc-CCeEEeecCC-ceEEEEecccCceeEEecCCCc
Confidence            4588899 9999999999976544332 2335668899999  985 4556666666 999999999988776654 578


Q ss_pred             CeeEEEECCCCCEEEEecCCCcEEEEEccCcceee--eeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhc
Q 014475           82 PIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLK--KWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECE  159 (424)
Q Consensus        82 ~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~--~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~  159 (424)
                      .|++++.+|.+..++.|+.||.+..++...++...  .+....+.|.++.|+|++..+++|+.||.|++||..++.....
T Consensus       112 ~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~  191 (691)
T KOG2048|consen  112 AIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHI  191 (691)
T ss_pred             ceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEE
Confidence            99999999999999999999988888877765543  3445568999999999999999999999999999976432110


Q ss_pred             ccccccceEEeec-CCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeee-cCcceeEEEECCCCCEEEEEe
Q 014475          160 SQRASHLYLHSFT-GHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYAGS  237 (424)
Q Consensus       160 ~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~  237 (424)
                      .    ...+-.+. ....-|+++.+-.+   ..+++|..-|+|.+||...+.+++.+. |...|.+++..+++..+++++
T Consensus       192 ~----~~~~d~l~k~~~~iVWSv~~Lrd---~tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~d~vfsaG  264 (691)
T KOG2048|consen  192 I----TMQLDRLSKREPTIVWSVLFLRD---STIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVADNEDRVFSAG  264 (691)
T ss_pred             e----eecccccccCCceEEEEEEEeec---CcEEEecCCceEEEEcccCcchhhhhhhhhcceeEEEEcCCCCeEEEcc
Confidence            0    00011111 13445777777766   589999999999999999999998888 899999999999999999999


Q ss_pred             CCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecCCCEEEEeCCCCcEEEEeCCC
Q 014475          238 RDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTGDLLISGSEDGMVRVWDPIT  299 (424)
Q Consensus       238 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~t~~~dg~i~iwd~~~  299 (424)
                      .|+.|..|...+....     +........|...|.+++..+ ..+++|+.|..+.+-..+.
T Consensus       265 vd~~ii~~~~~~~~~~-----wv~~~~r~~h~hdvrs~av~~-~~l~sgG~d~~l~i~~s~~  320 (691)
T KOG2048|consen  265 VDPKIIQYSLTTNKSE-----WVINSRRDLHAHDVRSMAVIE-NALISGGRDFTLAICSSRE  320 (691)
T ss_pred             CCCceEEEEecCCccc-----eeeeccccCCcccceeeeeec-ceEEecceeeEEEEccccc
Confidence            9999999998876531     334445567888999999875 5999999999998876554

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.94  E-value=7e-25  Score=194.47  Aligned_cols=280  Identities=18%  Similarity=0.225  Sum_probs=230.6

Q ss_pred             CCCceEEecceeecCCCccccCCCCceeEEEEECCCCceeeee---cCCCCeeEEEECCCCCEEEEecCCCcEEEEEccC
Q 014475           35 PPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKS---LPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVAS  111 (424)
Q Consensus        35 ~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~~---~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~  111 (424)
                      -+..|.+++  |+...+.||++-.+ |.|.+|++...-.....   .....|.+++|++. ..|++.+.+|.|.-||+.+
T Consensus        24 ~Ps~I~slA--~s~kS~~lAvsRt~-g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e~-~RLFS~g~sg~i~EwDl~~   99 (691)
T KOG2048|consen   24 KPSEIVSLA--YSHKSNQLAVSRTD-GNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAEG-GRLFSSGLSGSITEWDLHT   99 (691)
T ss_pred             eccceEEEE--EeccCCceeeeccC-CcEEEEccCCCceeeEEEecCCCCceeeEEEccC-CeEEeecCCceEEEEeccc
Confidence            357799999  99999999998887 99999999876544333   34678999999955 4577778899999999999


Q ss_pred             cceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeE
Q 014475          112 GRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSAT  191 (424)
Q Consensus       112 ~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~  191 (424)
                      ++....+....+.|++++.+|.+..++.|+.||.+..++...         ........+...++++.++.|++++  ..
T Consensus       100 lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p---------~~I~~~r~l~rq~sRvLslsw~~~~--~~  168 (691)
T KOG2048|consen  100 LKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGP---------DKITYKRSLMRQKSRVLSLSWNPTG--TK  168 (691)
T ss_pred             CceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCC---------ceEEEEeecccccceEEEEEecCCc--cE
Confidence            999999999999999999999999999999999877777754         2333344455567999999999998  78


Q ss_pred             EEEEeCCCcEEEEecCCCceeeeee---------cCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceee
Q 014475          192 IVSASEDRTCKVWSLLKGRLLRNIV---------FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHII  262 (424)
Q Consensus       192 l~~~~~d~~v~iwd~~~~~~~~~~~---------~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~  262 (424)
                      +++|+.||.|++||..++..+....         .+.-|.++.+- ....+++|...|.|.+||...+         ..+
T Consensus       169 i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~L-rd~tI~sgDS~G~V~FWd~~~g---------TLi  238 (691)
T KOG2048|consen  169 IAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFL-RDSTIASGDSAGTVTFWDSIFG---------TLI  238 (691)
T ss_pred             EEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEe-ecCcEEEecCCceEEEEcccCc---------chh
Confidence            9999999999999999988776332         12235566666 4456899999999999999997         667


Q ss_pred             eeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCCCcE----EEEEeccCCCeeEEEEEecCceeeeccCCCceeec
Q 014475          263 GSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNI----VRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSS  337 (424)
Q Consensus       263 ~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~----~~~~~~~~~~v~~l~~s~~~~~l~~~~~d~~i~iw  337 (424)
                      +.+..|.+.|.+++..+ ++.+++++.|+.|.-+...+.+.    ......|...|.+++..++  .|++|+.|..+.+=
T Consensus       239 qS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~--~l~sgG~d~~l~i~  316 (691)
T KOG2048|consen  239 QSHSCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN--ALISGGRDFTLAIC  316 (691)
T ss_pred             hhhhhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeecc--eEEecceeeEEEEc
Confidence            78889999999999999 89999999999999988776543    2334578889999999987  89999999998877


Q ss_pred             cCCC
Q 014475          338 RRHG  341 (424)
Q Consensus       338 ~~~~  341 (424)
                      ....
T Consensus       317 ~s~~  320 (691)
T KOG2048|consen  317 SSRE  320 (691)
T ss_pred             cccc
Confidence            6654

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.94  E-value=1.7e-25  Score=190.12  Aligned_cols=268  Identities=15%  Similarity=0.223  Sum_probs=210.5

Q ss_pred             CCceeEEEEECCCCceeeeecCCCCe--eEEEECCCCCEEEEecC-CCcEEEEEccCcceeeeeccccCCeEEEEEccCC
Q 014475           58 ASSGSILYWSWSKPQVEVKSLPAEPI--KPIAANSHGTYIAGGGQ-SGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDG  134 (424)
Q Consensus        58 ~~~g~i~vwd~~~~~~~~~~~~~~~v--~~~~~s~~~~~l~~~~~-dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~  134 (424)
                      .+...+.+||+.++............  .++..- .+.+++++.. ...|.+|.+...........-.++|.++.-+|+|
T Consensus        15 ~d~~~~~~~dl~TGt~~~~ykg~~~a~~~sl~~l-~~~yllsaq~~rp~l~vw~i~k~~~~~q~~v~Pg~v~al~s~n~G   93 (476)
T KOG0646|consen   15 FDPINCIVWDLRTGTSLLQYKGSYLAQAASLTAL-NNEYLLSAQLKRPLLHVWEILKKDQVVQYIVLPGPVHALASSNLG   93 (476)
T ss_pred             CCCcceeEEecCCCceeEEecCcccccchhhhhh-chhheeeecccCccccccccCchhhhhhhcccccceeeeecCCCc
Confidence            34377999999998876554433111  111111 2356666643 4569999987665555444456889999999999


Q ss_pred             cEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecC-------
Q 014475          135 SFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLL-------  207 (424)
Q Consensus       135 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~-------  207 (424)
                      .+++.|+..|.|++|.+.+           ...+..+.+|-..|+++.|+.++  .+|++|+.||.|.+|++.       
T Consensus        94 ~~l~ag~i~g~lYlWelss-----------G~LL~v~~aHYQ~ITcL~fs~dg--s~iiTgskDg~V~vW~l~~lv~a~~  160 (476)
T KOG0646|consen   94 YFLLAGTISGNLYLWELSS-----------GILLNVLSAHYQSITCLKFSDDG--SHIITGSKDGAVLVWLLTDLVSADN  160 (476)
T ss_pred             eEEEeecccCcEEEEEecc-----------ccHHHHHHhhccceeEEEEeCCC--cEEEecCCCccEEEEEEEeeccccc
Confidence            9999998999999999965           44566778999999999999998  999999999999999863       


Q ss_pred             --CCceeeeee-cCcceeEEEECCC--CCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CC
Q 014475          208 --KGRLLRNIV-FPSVIDAIALDPA--EHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GD  281 (424)
Q Consensus       208 --~~~~~~~~~-~~~~i~~~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~  281 (424)
                        +.+++..+. |.-+|+.+...+.  ..++++++.|.++++||+..+.         .+..+ .....+.+++.+| +.
T Consensus       161 ~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~---------LLlti-~fp~si~av~lDpae~  230 (476)
T KOG0646|consen  161 DHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGV---------LLLTI-TFPSSIKAVALDPAER  230 (476)
T ss_pred             CCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccce---------eeEEE-ecCCcceeEEEccccc
Confidence              335566665 7889999988775  5689999999999999999973         33333 3567899999999 99


Q ss_pred             EEEEeCCCCcEEEEeCCC----------------CcEEEEEeccCC--CeeEEEEEecCceeeeccCCCceeeccCCCCC
Q 014475          282 LLISGSEDGMVRVWDPIT----------------HNIVRMFRLAKG--PVNNILVVRRPLYLNLGSFSNPHTSSRRHGSQ  343 (424)
Q Consensus       282 ~l~t~~~dg~i~iwd~~~----------------~~~~~~~~~~~~--~v~~l~~s~~~~~l~~~~~d~~i~iw~~~~~~  343 (424)
                      .+..|+++|.|.+.++..                +..+..+.+|.+  +|++++.+-||..|++|+.||.+++||+...+
T Consensus       231 ~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q  310 (476)
T KOG0646|consen  231 VVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQ  310 (476)
T ss_pred             EEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHH
Confidence            999999999999987653                234566779988  99999999999999999999999999999877


Q ss_pred             CCCCcc
Q 014475          344 LPPPLD  349 (424)
Q Consensus       344 ~~~~~~  349 (424)
                      +...+.
T Consensus       311 ~iRtl~  316 (476)
T KOG0646|consen  311 CIRTLQ  316 (476)
T ss_pred             HHHHHh
Confidence            755443

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.94  E-value=7.3e-27  Score=208.31  Aligned_cols=246  Identities=22%  Similarity=0.442  Sum_probs=213.7

Q ss_pred             CCCceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCceeee-ecCCCCeeEEEEC
Q 014475           11 ADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVK-SLPAEPIKPIAAN   89 (424)
Q Consensus        11 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~-~~~~~~v~~~~~s   89 (424)
                      .+-.+++||.+...         .|...+.++.  .-..++.+++||.+ ..+-+|.......... ..|..+|.++.|+
T Consensus        12 ~~t~Lr~~~~~~~~---------~hsaav~~lk--~~~s~r~~~~Gg~~-~k~~L~~i~kp~~i~S~~~hespIeSl~f~   79 (825)
T KOG0267|consen   12 RATKLRVWDTREFV---------AHSAAVGCLK--IRKSSRSLVTGGED-EKVNLWAIGKPNAITSLTGHESPIESLTFD   79 (825)
T ss_pred             eeeccccccchhhh---------hhhhhhceee--eeccceeeccCCCc-eeeccccccCCchhheeeccCCcceeeecC
Confidence            35567788865321         2334455555  55677888888887 8899999987766554 7899999999999


Q ss_pred             CCCCEEEEecCCCcEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEE
Q 014475           90 SHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLH  169 (424)
Q Consensus        90 ~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~  169 (424)
                      ++..+|++|+.+|+|++||++.++.++++.+|...+.++.|+|-+.++++|+.|+.+++||++           +..+.+
T Consensus        80 ~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~R-----------k~Gc~~  148 (825)
T KOG0267|consen   80 TSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIR-----------KKGCSH  148 (825)
T ss_pred             cchhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhh-----------ccCcee
Confidence            999999999999999999999999999999999999999999999999999999999999995           345678


Q ss_pred             eecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeee-cCcceeEEEECCCCCEEEEEeCCCcEEEEEcC
Q 014475          170 SFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYAGSRDGSIYIAALN  248 (424)
Q Consensus       170 ~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~  248 (424)
                      .+.+|...+..+.|+|+|  .+++.+++|.++++||...|+....|. |...+..+.++|..-+++.|+.|+++++||++
T Consensus       149 ~~~s~~~vv~~l~lsP~G--r~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dle  226 (825)
T KOG0267|consen  149 TYKSHTRVVDVLRLSPDG--RWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLE  226 (825)
T ss_pred             eecCCcceeEEEeecCCC--ceeeccCCcceeeeecccccccccccccccccccccccCchhhhhccCCCCceeeeeccc
Confidence            889999999999999999  999999999999999999999999998 99999999999999999999999999999999


Q ss_pred             CCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCCC
Q 014475          249 AESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDG  290 (424)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg  290 (424)
                      +.         ..+.........|.+.+|+| +..+++|..+.
T Consensus       227 tf---------e~I~s~~~~~~~v~~~~fn~~~~~~~~G~q~s  260 (825)
T KOG0267|consen  227 TF---------EVISSGKPETDGVRSLAFNPDGKIVLSGEQIS  260 (825)
T ss_pred             ee---------EEeeccCCccCCceeeeecCCceeeecCchhh
Confidence            84         56666666788999999999 88877776554

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.94  E-value=9.2e-25  Score=177.12  Aligned_cols=285  Identities=14%  Similarity=0.153  Sum_probs=210.0

Q ss_pred             CCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCcee-----eeecCCCCeeEEEECCCCCEEEEec-CCCcEEE
Q 014475           33 ASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVE-----VKSLPAEPIKPIAANSHGTYIAGGG-QSGDIYM  106 (424)
Q Consensus        33 ~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~-----~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~v~i  106 (424)
                      .+|...|++++  |+.||++|++++.| +.|++|+++.-+..     .....-+..+.+.|+||-+-++... ...++++
T Consensus        83 KgH~~~vt~~~--FsSdGK~lat~~~D-r~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~v  159 (420)
T KOG2096|consen   83 KGHKKEVTDVA--FSSDGKKLATISGD-RSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLCV  159 (420)
T ss_pred             hccCCceeeeE--EcCCCceeEEEeCC-ceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEEE
Confidence            45678899999  99999999999998 99999999864321     1122345678999999977665544 4457999


Q ss_pred             EEccCcc---eee---------eeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCC
Q 014475          107 WEVASGR---LLK---------KWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGH  174 (424)
Q Consensus       107 wd~~~~~---~~~---------~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  174 (424)
                      |.+...+   ...         .-+.|.-.+..+-...+++++++++.|..|.+|++.            .+.+..+...
T Consensus       160 yk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk------------Gq~L~~idtn  227 (420)
T KOG2096|consen  160 YKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK------------GQLLQSIDTN  227 (420)
T ss_pred             EEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC------------Cceeeeeccc
Confidence            9874321   111         113466677777788889999999999999999994            3455666666


Q ss_pred             cCceeEEEEEEcCceeEEEEEeCCCcEEEEecC---CCc---eee--eee-cCcceeEEEECCCCCEEEEEeCCCcEEEE
Q 014475          175 TLRITDIVIGYGGVSATIVSASEDRTCKVWSLL---KGR---LLR--NIV-FPSVIDAIALDPAEHVFYAGSRDGSIYIA  245 (424)
Q Consensus       175 ~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~---~~~---~~~--~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~  245 (424)
                      ...-...+.+|+|  +++++++-.--|++|.+-   .|.   ..+  .+. |...|..++|+++...+++.+.||++++|
T Consensus       228 q~~n~~aavSP~G--RFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriw  305 (420)
T KOG2096|consen  228 QSSNYDAAVSPDG--RFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIW  305 (420)
T ss_pred             cccccceeeCCCC--cEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEe
Confidence            6677788899999  899999999999999863   221   222  233 88899999999999999999999999999


Q ss_pred             EcCCCCCCCCCcCceeee----eecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCCCcEEEEEe-ccCCCeeEEEEE
Q 014475          246 ALNAESPSTSSYGMHIIG----SLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFR-LAKGPVNNILVV  319 (424)
Q Consensus       246 d~~~~~~~~~~~~~~~~~----~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~l~~s  319 (424)
                      |++-.-.....  ...+.    .+..-.+....+..+| ++.|+.+. ...++++..++|+....+. .|.+.|.+++|+
T Consensus       306 dtdVrY~~~qD--pk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~-gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~  382 (420)
T KOG2096|consen  306 DTDVRYEAGQD--PKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSF-GSDLKVFASEDGKDYPELEDIHSTTISSISYS  382 (420)
T ss_pred             eccceEecCCC--chHhhcCCcchhhcCCCceEEEeCCCCcEEEeec-CCceEEEEcccCccchhHHHhhcCceeeEEec
Confidence            98653211100  01111    1222234445899999 77766654 5679999999998877765 588999999999


Q ss_pred             ecCceeeeccCCCceeecc
Q 014475          320 RRPLYLNLGSFSNPHTSSR  338 (424)
Q Consensus       320 ~~~~~l~~~~~d~~i~iw~  338 (424)
                      ++|+++++++ |..+++..
T Consensus       383 ~~g~~~atcG-dr~vrv~~  400 (420)
T KOG2096|consen  383 SDGKYIATCG-DRYVRVIR  400 (420)
T ss_pred             CCCcEEeeec-ceeeeeec
Confidence            9999999986 45555554

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.94  E-value=1.8e-25  Score=195.39  Aligned_cols=279  Identities=17%  Similarity=0.188  Sum_probs=223.0

Q ss_pred             CCCCceEEecceeecCCCccccCCCCceeEEEEECCCCceeeeecCCCCeeEEEECCCCC--EEEEecCCCcEEEEEccC
Q 014475           34 SPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSLPAEPIKPIAANSHGT--YIAGGGQSGDIYMWEVAS  111 (424)
Q Consensus        34 ~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~~~~~~~v~~~~~s~~~~--~l~~~~~dg~v~iwd~~~  111 (424)
                      +|.+.|.++.  ..|.|.+|++|+.| |+|++|.+.++.+.......+.|.|++|+|.+.  .||++-.. .+.|-+..-
T Consensus       398 GHtg~Vr~iS--vdp~G~wlasGsdD-GtvriWEi~TgRcvr~~~~d~~I~~vaw~P~~~~~vLAvA~~~-~~~ivnp~~  473 (733)
T KOG0650|consen  398 GHTGLVRSIS--VDPSGEWLASGSDD-GTVRIWEIATGRCVRTVQFDSEIRSVAWNPLSDLCVLAVAVGE-CVLIVNPIF  473 (733)
T ss_pred             ccCCeEEEEE--ecCCcceeeecCCC-CcEEEEEeecceEEEEEeecceeEEEEecCCCCceeEEEEecC-ceEEeCccc
Confidence            4556788888  89999999999998 999999999999998888899999999999654  44544333 344443321


Q ss_pred             c---------------------------------c----eeeeeccccCCeEEEEEccCCcEEEEeeCC---CcEEEEeC
Q 014475          112 G---------------------------------R----LLKKWHAHYRAVTCLVFSEDGSFLISGSED---GCVRIWSL  151 (424)
Q Consensus       112 ~---------------------------------~----~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d---g~i~iwd~  151 (424)
                      |                                 .    -+...-.|...|..+.|+..|.+|++...+   ..|.|+++
T Consensus       474 G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQL  553 (733)
T KOG0650|consen  474 GDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQL  553 (733)
T ss_pred             cchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEEec
Confidence            1                                 0    011223478899999999999999987654   46899998


Q ss_pred             CcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeee-cCcceeEEEECCCC
Q 014475          152 LTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAE  230 (424)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~  230 (424)
                      ..           ......+....+.+.++.|+|..  .+|++++. ..|++||+..++.++.+. ....|..++.+|.|
T Consensus       554 SK-----------~~sQ~PF~kskG~vq~v~FHPs~--p~lfVaTq-~~vRiYdL~kqelvKkL~tg~kwiS~msihp~G  619 (733)
T KOG0650|consen  554 SK-----------RKSQSPFRKSKGLVQRVKFHPSK--PYLFVATQ-RSVRIYDLSKQELVKKLLTGSKWISSMSIHPNG  619 (733)
T ss_pred             cc-----------ccccCchhhcCCceeEEEecCCC--ceEEEEec-cceEEEehhHHHHHHHHhcCCeeeeeeeecCCC
Confidence            54           22223445567788999999987  66666664 679999999888777766 55679999999999


Q ss_pred             CEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCC------CC---
Q 014475          231 HVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPI------TH---  300 (424)
Q Consensus       231 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~------~~---  300 (424)
                      ..|++|+.|+.+..+|++...        ++.+.+..|...+++++|++ -.++++|+.||++.|+.-.      ..   
T Consensus       620 Dnli~gs~d~k~~WfDldlss--------kPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpli  691 (733)
T KOG0650|consen  620 DNLILGSYDKKMCWFDLDLSS--------KPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLI  691 (733)
T ss_pred             CeEEEecCCCeeEEEEcccCc--------chhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCce
Confidence            999999999999999999875        77888999999999999999 8999999999999998632      11   


Q ss_pred             cEEEEEeccCCC----eeEEEEEecCceeeeccCCCceeecc
Q 014475          301 NIVRMFRLAKGP----VNNILVVRRPLYLNLGSFSNPHTSSR  338 (424)
Q Consensus       301 ~~~~~~~~~~~~----v~~l~~s~~~~~l~~~~~d~~i~iw~  338 (424)
                      -+++.+++|...    |..+.|+|...+|.+++.||+|++|.
T Consensus       692 VPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlfT  733 (733)
T KOG0650|consen  692 VPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLFT  733 (733)
T ss_pred             EeeeeccCceeecccceEeecccCCCceEEecCCCceEEeeC
Confidence            245677888764    88999999999999999999999983

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.94  E-value=2e-26  Score=207.05  Aligned_cols=235  Identities=18%  Similarity=0.250  Sum_probs=197.4

Q ss_pred             ee-cCCCccccCCCCceeEEEEECCCC--c--eeeeecCCCCeeEEEECC-CCCEEEEecCCCcEEEEEccCcceeeeec
Q 014475           46 FL-ASSQLREQPSASSGSILYWSWSKP--Q--VEVKSLPAEPIKPIAANS-HGTYIAGGGQSGDIYMWEVASGRLLKKWH  119 (424)
Q Consensus        46 ~~-~~~~~l~~~~~~~g~i~vwd~~~~--~--~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~v~iwd~~~~~~~~~~~  119 (424)
                      |. -+.++||+++.. |.|.+||+...  +  ......|...++++.|++ ...+|++|+.||.|++||++..+...++.
T Consensus        95 W~~~~~NlIAT~s~n-G~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~  173 (839)
T KOG0269|consen   95 WGQLYSNLIATCSTN-GVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFR  173 (839)
T ss_pred             cccchhhhheeecCC-CcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeeccccccccc
Confidence            55 356788888888 99999999862  2  223456899999999998 57889999999999999999999999999


Q ss_pred             cccCCeEEEEEcc-CCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCC
Q 014475          120 AHYRAVTCLVFSE-DGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASED  198 (424)
Q Consensus       120 ~~~~~i~~~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d  198 (424)
                      +....|..+.|+| .+..|+++...|.+++||++.          ..++...+..|.++|.++.|+|+.  .+|+||+.|
T Consensus       174 ~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRq----------p~r~~~k~~AH~GpV~c~nwhPnr--~~lATGGRD  241 (839)
T KOG0269|consen  174 SNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQ----------PDRCEKKLTAHNGPVLCLNWHPNR--EWLATGGRD  241 (839)
T ss_pred             ccchhhhceeeccCCCceEEEecCCceEEEeeccC----------chhHHHHhhcccCceEEEeecCCC--ceeeecCCC
Confidence            9999999999999 678899999999999999975          345667788999999999999977  999999999


Q ss_pred             CcEEEEecCCCc--eeeeeecCcceeEEEECCCCCE-EEEEe--CCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeE
Q 014475          199 RTCKVWSLLKGR--LLRNIVFPSVIDAIALDPAEHV-FYAGS--RDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVT  273 (424)
Q Consensus       199 ~~v~iwd~~~~~--~~~~~~~~~~i~~~~~~~~~~~-l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~  273 (424)
                      +.|+|||..+.+  ....+....++.++.|-|...+ |++++  .|-.|++||++..-        -+...+..|...++
T Consensus       242 K~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPY--------IP~~t~~eH~~~vt  313 (839)
T KOG0269|consen  242 KMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPY--------IPYATFLEHTDSVT  313 (839)
T ss_pred             ccEEEEeccCCCccceeEEeecceeeeeeeccCccchhhhhhccccceEEEEeecccc--------ccceeeeccCcccc
Confidence            999999998654  4555667889999999997655 55544  46789999999863        56678889999999


Q ss_pred             EEEecC--CCEEEEeCCCCcEEEEeCCCCc
Q 014475          274 CLAYST--GDLLISGSEDGMVRVWDPITHN  301 (424)
Q Consensus       274 ~~~~~~--~~~l~t~~~dg~i~iwd~~~~~  301 (424)
                      .++|..  ...+.+++.||+|..-..+++.
T Consensus       314 ~i~W~~~d~~~l~s~sKD~tv~qh~~knat  343 (839)
T KOG0269|consen  314 GIAWDSGDRINLWSCSKDGTVLQHLFKNAT  343 (839)
T ss_pred             ceeccCCCceeeEeecCccHHHHhhhhccc
Confidence            999977  6688999999998776655543

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.94  E-value=2.1e-26  Score=215.73  Aligned_cols=265  Identities=20%  Similarity=0.265  Sum_probs=213.0

Q ss_pred             eeEEEEECC--CCce----eeeecCCCCeeEEEECCCCCE----EEEecCCCcEEEEEccCc------ceeeeeccccCC
Q 014475           61 GSILYWSWS--KPQV----EVKSLPAEPIKPIAANSHGTY----IAGGGQSGDIYMWEVASG------RLLKKWHAHYRA  124 (424)
Q Consensus        61 g~i~vwd~~--~~~~----~~~~~~~~~v~~~~~s~~~~~----l~~~~~dg~v~iwd~~~~------~~~~~~~~~~~~  124 (424)
                      .++.+|.++  ..+.    ..........+.++|.+.+..    ||.|.+||.|.+||...-      ..+.+...|.+.
T Consensus        39 ~slEifeld~~~~~~dlk~~~s~~s~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~  118 (1049)
T KOG0307|consen   39 ASLEIFELDFSDESSDLKPVGSLQSSNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGP  118 (1049)
T ss_pred             cccceeeecccCccccccccccccccccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCc
Confidence            556666554  2221    122234668899999987665    899999999999998652      345667889999


Q ss_pred             eEEEEEcc-CCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEE
Q 014475          125 VTCLVFSE-DGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKV  203 (424)
Q Consensus       125 i~~~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~i  203 (424)
                      |..+.|++ .+++|++|+.||.|.|||+.+......         ..-......|.+++|+..-. ..|++++.+|.+.|
T Consensus       119 V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~---------~~~~~~~~eI~~lsWNrkvq-hILAS~s~sg~~~i  188 (1049)
T KOG0307|consen  119 VLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFT---------PGSQAPPSEIKCLSWNRKVS-HILASGSPSGRAVI  188 (1049)
T ss_pred             eeeeeccccCCceeeccCCCCcEEEeccCCcCCCCC---------CCCCCCcccceEeccchhhh-HHhhccCCCCCcee
Confidence            99999999 455999999999999999976322111         11223567899999987654 67889999999999


Q ss_pred             EecCCCceeeeeecC---cceeEEEECCCC-CEEEEEeCCC---cEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEE
Q 014475          204 WSLLKGRLLRNIVFP---SVIDAIALDPAE-HVFYAGSRDG---SIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLA  276 (424)
Q Consensus       204 wd~~~~~~~~~~~~~---~~i~~~~~~~~~-~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  276 (424)
                      ||++..+++..+...   ..+..++|+|+. ..+++++.|.   .|.+||+|...        .+++.+++|...|.++.
T Consensus       189 WDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~as--------sP~k~~~~H~~Gilsls  260 (1049)
T KOG0307|consen  189 WDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFAS--------SPLKILEGHQRGILSLS  260 (1049)
T ss_pred             ccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccC--------Cchhhhcccccceeeec
Confidence            999999888877733   347899999965 4566666544   69999999875        67888899999999999


Q ss_pred             ecC--CCEEEEeCCCCcEEEEeCCCCcEEEEEeccCCCeeEEEEEecCc-eeeeccCCCceeeccCCCCC
Q 014475          277 YST--GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPL-YLNLGSFSNPHTSSRRHGSQ  343 (424)
Q Consensus       277 ~~~--~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~-~l~~~~~d~~i~iw~~~~~~  343 (424)
                      |++  .+++++++.|+.|.+|+.++++.+..+......+..+.|.|... .+++++.||.|-|+.+.+..
T Consensus       261 Wc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~  330 (1049)
T KOG0307|consen  261 WCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD  330 (1049)
T ss_pred             cCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCcceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence            999  48999999999999999999999999998888999999999765 88899999999999998765

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.94  E-value=2.3e-25  Score=178.72  Aligned_cols=215  Identities=22%  Similarity=0.311  Sum_probs=178.0

Q ss_pred             ccccCCeEEEEEcc-CCcEEEEeeCCCcEEEEeCCcccchhccc-ccccce---EEeecCCcCceeEEEEEEcCceeEEE
Q 014475          119 HAHYRAVTCLVFSE-DGSFLISGSEDGCVRIWSLLTVFEECESQ-RASHLY---LHSFTGHTLRITDIVIGYGGVSATIV  193 (424)
Q Consensus       119 ~~~~~~i~~~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~~---~~~~~~~~~~i~~~~~~~~~~~~~l~  193 (424)
                      +.|.+.|+++...+ .|+++++|+.||.|.+||+++........ ..+..+   ...-.+|+-.|.++.|-|-.. ..+.
T Consensus        40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~Dt-GmFt  118 (397)
T KOG4283|consen   40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDT-GMFT  118 (397)
T ss_pred             ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecC-ceee
Confidence            46889999999988 78999999999999999997744211110 011111   122356888999999999765 6888


Q ss_pred             EEeCCCcEEEEecCCCceeeeeecCcceeEEEECC---CCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCc
Q 014475          194 SASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDP---AEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSK  270 (424)
Q Consensus       194 ~~~~d~~v~iwd~~~~~~~~~~~~~~~i~~~~~~~---~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~  270 (424)
                      +++-|.++++||.++.+....+..++.|.+-+++|   ..-++++|..+-.|++-|+..+         .....+.+|..
T Consensus       119 ssSFDhtlKVWDtnTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SG---------s~sH~LsGHr~  189 (397)
T KOG4283|consen  119 SSSFDHTLKVWDTNTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASG---------SFSHTLSGHRD  189 (397)
T ss_pred             cccccceEEEeecccceeeEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCC---------cceeeeccccC
Confidence            99999999999999999999999999999999999   3557888999999999999998         56788999999


Q ss_pred             CeEEEEecC--CCEEEEeCCCCcEEEEeCCCC-cEEEEEe--------------ccCCCeeEEEEEecCceeeeccCCCc
Q 014475          271 AVTCLAYST--GDLLISGSEDGMVRVWDPITH-NIVRMFR--------------LAKGPVNNILVVRRPLYLNLGSFSNP  333 (424)
Q Consensus       271 ~i~~~~~~~--~~~l~t~~~dg~i~iwd~~~~-~~~~~~~--------------~~~~~v~~l~~s~~~~~l~~~~~d~~  333 (424)
                      .|.++.|+|  .-.|++|+.||.|++||++.. .+...+.              .|.+.|..++|+.++.++++.+.|..
T Consensus       190 ~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r  269 (397)
T KOG4283|consen  190 GVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDR  269 (397)
T ss_pred             ceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccc
Confidence            999999999  567889999999999999864 3333332              56678999999999999999999999


Q ss_pred             eeeccCCCCC
Q 014475          334 HTSSRRHGSQ  343 (424)
Q Consensus       334 i~iw~~~~~~  343 (424)
                      +++|+...+.
T Consensus       270 ~r~wn~~~G~  279 (397)
T KOG4283|consen  270 IRVWNMESGR  279 (397)
T ss_pred             eEEeecccCc
Confidence            9999987654

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.94  E-value=3.5e-24  Score=172.92  Aligned_cols=265  Identities=16%  Similarity=0.209  Sum_probs=195.8

Q ss_pred             CCCCceEEecceeecCCCccccCCCCceeEEEEECCCCceeee-----ecCCCCeeEEEECC--CCCEEEEecCCCcEEE
Q 014475           34 SPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVK-----SLPAEPIKPIAANS--HGTYIAGGGQSGDIYM  106 (424)
Q Consensus        34 ~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~-----~~~~~~v~~~~~s~--~~~~l~~~~~dg~v~i  106 (424)
                      +|.+-|.++.  |.+.|+++|+++.| ++|+|||.++..-...     ..|.+.|..+.|.+  -|+.+|+++.|+++.|
T Consensus        11 ~h~DlihdVs--~D~~GRRmAtCSsD-q~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~i   87 (361)
T KOG2445|consen   11 GHKDLIHDVS--FDFYGRRMATCSSD-QTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSI   87 (361)
T ss_pred             CCcceeeeee--ecccCceeeeccCC-CcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceee
Confidence            4557788988  99999999999998 9999999765543322     35899999999965  4999999999999999


Q ss_pred             EEccCc---------ceeeeeccccCCeEEEEEcc--CCcEEEEeeCCCcEEEEeCCcccchhcccccccceEE------
Q 014475          107 WEVASG---------RLLKKWHAHYRAVTCLVFSE--DGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLH------  169 (424)
Q Consensus       107 wd~~~~---------~~~~~~~~~~~~i~~~~~~~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~------  169 (424)
                      |.-...         ....++......|+.++|.|  -|-.+++++.||.++||+.-+....     .......      
T Consensus        88 WEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nL-----s~W~Lq~Ei~~~~  162 (361)
T KOG2445|consen   88 WEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNL-----SQWTLQHEIQNVI  162 (361)
T ss_pred             eeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCcccc-----ccchhhhhhhhcc
Confidence            985211         23445666788999999998  5778999999999999987542211     1111111      


Q ss_pred             -eecCCcCceeEEEEEEcCce-eEEEEEeCC-----CcEEEEecCCCc----eeeeee-cCcceeEEEECCC----CCEE
Q 014475          170 -SFTGHTLRITDIVIGYGGVS-ATIVSASED-----RTCKVWSLLKGR----LLRNIV-FPSVIDAIALDPA----EHVF  233 (424)
Q Consensus       170 -~~~~~~~~i~~~~~~~~~~~-~~l~~~~~d-----~~v~iwd~~~~~----~~~~~~-~~~~i~~~~~~~~----~~~l  233 (424)
                       ....+..+..|+.|++..-. ..|+.|+.+     +.++||......    .+..+. +..+|+.++|.|+    -..+
T Consensus       163 ~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~l  242 (361)
T KOG2445|consen  163 DPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLL  242 (361)
T ss_pred             CCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeE
Confidence             22346778889999875422 456666655     478899765432    222333 8899999999994    3578


Q ss_pred             EEEeCCCcEEEEEcCCCC-----------CCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCC--
Q 014475          234 YAGSRDGSIYIAALNAES-----------PSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPIT--  299 (424)
Q Consensus       234 ~~~~~dg~i~i~d~~~~~-----------~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~--  299 (424)
                      ++++.|| |+||.+....           ........+.+..+.+|.+.|..+.|+- |..|++.|.||.||+|...-  
T Consensus       243 AvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkany~n  321 (361)
T KOG2445|consen  243 AVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKANYNN  321 (361)
T ss_pred             EEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhhhhh
Confidence            9999999 9999998421           1222334566778899999999999998 99999999999999998542  


Q ss_pred             -CcEEEEEe
Q 014475          300 -HNIVRMFR  307 (424)
Q Consensus       300 -~~~~~~~~  307 (424)
                       .++...++
T Consensus       322 ~~kC~sv~~  330 (361)
T KOG2445|consen  322 LWKCTSVLK  330 (361)
T ss_pred             hheeeeEEe
Confidence             34444444

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.94  E-value=1.6e-24  Score=192.69  Aligned_cols=326  Identities=15%  Similarity=0.212  Sum_probs=246.8

Q ss_pred             EEeecCCCCCceEEEeCCCC--ceEEEeeC--CCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCc----eee
Q 014475            4 LIASSSVADTGIGCWDLESG--AEQLRYKS--CASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQ----VEV   75 (424)
Q Consensus         4 ~lat~~~~dg~i~vwd~~~~--~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~----~~~   75 (424)
                      .|.+++ .|+++.+|...+.  --+...+-  ..+...+....-  |+|++..+++-+.. |..++|......    ...
T Consensus       281 ~LLSAS-aDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~l--w~~n~~~ii~~g~~-Gg~hlWkt~d~~~w~~~~~  356 (764)
T KOG1063|consen  281 DLLSAS-ADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGL--WSPNSNVIIAHGRT-GGFHLWKTKDKTFWTQEPV  356 (764)
T ss_pred             hheecc-cCcceEEEecCCccceEEEEEEeecccccccceeeEE--EcCCCCEEEEeccc-CcEEEEeccCccceeeccc
Confidence            477888 9999999997654  33333322  222233444444  99999999988888 999999943322    234


Q ss_pred             eecCCCCeeEEEECCCCCEEEEecCCCcEEEEEccCc----ceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeC
Q 014475           76 KSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASG----RLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSL  151 (424)
Q Consensus        76 ~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~----~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~  151 (424)
                      ...|.+.|..++|+|.|.+|++.+.|.+-+++-.-..    -.+..-+-|.-..+|++|-+....+++|.....+|+|+.
T Consensus       357 iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~a  436 (764)
T KOG1063|consen  357 ISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEA  436 (764)
T ss_pred             cccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccCCceeeecccceeeeeecC
Confidence            4568999999999999999999999999999865411    233444668889999999986677999999999999986


Q ss_pred             Ccccch--------------------------------hcccc---------------------------------cccc
Q 014475          152 LTVFEE--------------------------------CESQR---------------------------------ASHL  166 (424)
Q Consensus       152 ~~~~~~--------------------------------~~~~~---------------------------------~~~~  166 (424)
                      ......                                .....                                 .-..
T Consensus       437 Pk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwP  516 (764)
T KOG1063|consen  437 PKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWP  516 (764)
T ss_pred             cHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccch
Confidence            321000                                00000                                 0011


Q ss_pred             eEEeecCCcCceeEEEEEEcCceeEEEEEeCCC-----cEEEEecCCCceeeeee-cCcceeEEEECCCCCEEEEEeCCC
Q 014475          167 YLHSFTGHTLRITDIVIGYGGVSATIVSASEDR-----TCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYAGSRDG  240 (424)
Q Consensus       167 ~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~-----~v~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg  240 (424)
                      .++.+.+|...|.+++.+|++  +++++++...     .|++|+..+......+. |.-.|+.++|+|++++|++.+.|.
T Consensus       517 Ev~KLYGHGyEv~~l~~s~~g--nliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDR  594 (764)
T KOG1063|consen  517 EVHKLYGHGYEVYALAISPTG--NLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDR  594 (764)
T ss_pred             hhHHhccCceeEEEEEecCCC--CEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEeecCc
Confidence            234457899999999999999  8999998654     59999999888877676 889999999999999999999999


Q ss_pred             cEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCCC--cEEEE--EeccCCCeeE
Q 014475          241 SIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITH--NIVRM--FRLAKGPVNN  315 (424)
Q Consensus       241 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~--~~~~~--~~~~~~~v~~  315 (424)
                      ++.+|...........     ....+.|..-|.++.|+| +.+++|+|.|.+|++|.....  +.+..  ...+..+|+.
T Consensus       595 t~sl~~~~~~~~~e~~-----fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~~~aVTA  669 (764)
T KOG1063|consen  595 TVSLYEVQEDIKDEFR-----FACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRFACLKFSLAVTA  669 (764)
T ss_pred             eEEeeeeecccchhhh-----hccccccceEEEEcccCcccceeEEecCCceEEEEeccCchhhhhhhhchhccCCceee
Confidence            9999999665422211     233778999999999999 888999999999999998877  44443  2347789999


Q ss_pred             EEEEec-----CceeeeccCCCceeeccCC
Q 014475          316 ILVVRR-----PLYLNLGSFSNPHTSSRRH  340 (424)
Q Consensus       316 l~~s~~-----~~~l~~~~~d~~i~iw~~~  340 (424)
                      +++.|-     +..+++|-..|.|.+|+..
T Consensus       670 v~~~~~~~~e~~~~vavGle~GeI~l~~~~  699 (764)
T KOG1063|consen  670 VAYLPVDHNEKGDVVAVGLEKGEIVLWRRK  699 (764)
T ss_pred             EEeeccccccccceEEEEecccEEEEEecc
Confidence            999862     2367889999999999966

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.94  E-value=5.1e-25  Score=186.12  Aligned_cols=278  Identities=18%  Similarity=0.223  Sum_probs=207.7

Q ss_pred             eecCCCccccCCCCc--eeEEEEECCCCceeeeecC----CCCeeEEEECC-------CCCEEEEecCCCcEEEEEccCc
Q 014475           46 FLASSQLREQPSASS--GSILYWSWSKPQVEVKSLP----AEPIKPIAANS-------HGTYIAGGGQSGDIYMWEVASG  112 (424)
Q Consensus        46 ~~~~~~~l~~~~~~~--g~i~vwd~~~~~~~~~~~~----~~~v~~~~~s~-------~~~~l~~~~~dg~v~iwd~~~~  112 (424)
                      .-|+..+++++-.++  ..+.+|=.+.....+-..|    .....|+.|..       -|+++|.|+.|..|.|||+.-.
T Consensus       133 V~psDnlIl~ar~eddvs~LEvYVyn~~e~nlYvHHD~ilpafPLC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~  212 (463)
T KOG0270|consen  133 VKPSDNLILCARNEDDVSYLEVYVYNEEEENLYVHHDFILPAFPLCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIV  212 (463)
T ss_pred             eccCCcEEEEeeccCCceEEEEEEEcCCCcceeEecceeccCcchhhhhhhcCCCCCCCcceEEEeccCceeEEeccccc
Confidence            346556666554332  3444554443332222222    44556777742       3789999999999999998522


Q ss_pred             c---eee------------------eeccccCCeEEEEEccC-CcEEEEeeCCCcEEEEeCCcccchhcccccccceEEe
Q 014475          113 R---LLK------------------KWHAHYRAVTCLVFSED-GSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHS  170 (424)
Q Consensus       113 ~---~~~------------------~~~~~~~~i~~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  170 (424)
                      .   +..                  ...+|...|..+.|+.+ .+.|++||.|.+|++||+.+           ..+...
T Consensus       213 d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~-----------g~p~~s  281 (463)
T KOG0270|consen  213 DAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDT-----------GKPKSS  281 (463)
T ss_pred             cccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEEEcCC-----------CCccee
Confidence            1   001                  12368888889999863 45789999999999999965           445667


Q ss_pred             ecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCC-CceeeeeecCcceeEEEECCC-CCEEEEEeCCCcEEEEEcC
Q 014475          171 FTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLK-GRLLRNIVFPSVIDAIALDPA-EHVFYAGSRDGSIYIAALN  248 (424)
Q Consensus       171 ~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~-~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~i~d~~  248 (424)
                      +..|...|.++.|+|... ..|++|+.|++|.+.|.|. ...-..+...+.|..++|.|. ...+++++.||+++-+|+|
T Consensus       282 ~~~~~k~Vq~l~wh~~~p-~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R  360 (463)
T KOG0270|consen  282 ITHHGKKVQTLEWHPYEP-SVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIR  360 (463)
T ss_pred             hhhcCCceeEEEecCCCc-eEEEeccccceEEeeeccCccccCceEEeccceEEEEecCCCceeEEEecCCceEEeeecC
Confidence            778999999999999876 8999999999999999994 344556668899999999994 5678888999999999999


Q ss_pred             CCCCCCCCcCceeeeeecccCcCeEEEEecC--CCEEEEeCCCCcEEEEeCCCCcE--EEEEeccCCCeeEEEEEecCc-
Q 014475          249 AESPSTSSYGMHIIGSLSDHSKAVTCLAYST--GDLLISGSEDGMVRVWDPITHNI--VRMFRLAKGPVNNILVVRRPL-  323 (424)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~l~t~~~dg~i~iwd~~~~~~--~~~~~~~~~~v~~l~~s~~~~-  323 (424)
                      ...        +++.++++|..+|.++++++  ..+++|++.|+.|++|++..-.+  +..-..--+...|.++.|+-. 
T Consensus       361 ~~~--------~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~  432 (463)
T KOG0270|consen  361 NPG--------KPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHSFKLGRLHCFALDPDVAF  432 (463)
T ss_pred             CCC--------CceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCcccccccccccceeecccCCCcce
Confidence            975        77889999999999999998  78999999999999999874433  222111223466677777654 


Q ss_pred             eeeeccCCCceeeccCCCCC
Q 014475          324 YLNLGSFSNPHTSSRRHGSQ  343 (424)
Q Consensus       324 ~l~~~~~d~~i~iw~~~~~~  343 (424)
                      .|+.|+..+.+++||+.+..
T Consensus       433 ~la~GG~k~~~~vwd~~~~~  452 (463)
T KOG0270|consen  433 TLAFGGEKAVLRVWDIFTNS  452 (463)
T ss_pred             EEEecCccceEEEeecccCh
Confidence            56778888889999998664

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.94  E-value=6.6e-25  Score=186.10  Aligned_cols=290  Identities=14%  Similarity=0.164  Sum_probs=215.2

Q ss_pred             CCCceEEecceeecCCC--ccccCCCCceeEEEEECCCCc-----eeeeecCCCCeeEEEECC-CCCEEEEecCCCcEEE
Q 014475           35 PPHGLACVGQRFLASSQ--LREQPSASSGSILYWSWSKPQ-----VEVKSLPAEPIKPIAANS-HGTYIAGGGQSGDIYM  106 (424)
Q Consensus        35 ~~~~v~~~~~~~~~~~~--~l~~~~~~~g~i~vwd~~~~~-----~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~v~i  106 (424)
                      +.+.|++++  |+|...  ++|+|... |.|-+||+.+.+     ......|..+|.++.|+| +...+++.+.||+|++
T Consensus       185 ~~~Rit~l~--fHPt~~~~lva~GdK~-G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~  261 (498)
T KOG4328|consen  185 TDRRITSLA--FHPTENRKLVAVGDKG-GQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRL  261 (498)
T ss_pred             cccceEEEE--ecccCcceEEEEccCC-CcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCceeee
Confidence            446789999  999876  44555554 999999995322     334456889999999999 5677888899999999


Q ss_pred             EEccCccee--eeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEE
Q 014475          107 WEVASGRLL--KKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIG  184 (424)
Q Consensus       107 wd~~~~~~~--~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  184 (424)
                      -|++.+...  ..+......+..+.|+.+...++.+..=|...+||+++..          .....+.-|...|++++++
T Consensus       262 ~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~----------s~~~~~~lh~kKI~sv~~N  331 (498)
T KOG4328|consen  262 QDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDG----------SEYENLRLHKKKITSVALN  331 (498)
T ss_pred             eeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCC----------ccchhhhhhhcccceeecC
Confidence            999887443  3333355667888898888888888888899999998732          2233456688899999999


Q ss_pred             EcCceeEEEEEeCCCcEEEEecCCCc-----eeeeeecCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCc
Q 014475          185 YGGVSATIVSASEDRTCKVWSLLKGR-----LLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGM  259 (424)
Q Consensus       185 ~~~~~~~l~~~~~d~~v~iwd~~~~~-----~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~  259 (424)
                      |-.+ .+|+|++.|++++|||++.-.     .+..+.|...|.+..|+|.+..|++.+.|..|+|||..--.....+  .
T Consensus       332 P~~p-~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p--~  408 (498)
T KOG4328|consen  332 PVCP-WFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEP--L  408 (498)
T ss_pred             CCCc-hheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCc--c
Confidence            9876 889999999999999998532     2455669999999999998888999999999999998411000000  0


Q ss_pred             eeeeeecccCc--CeEEEEecC-CCEEEEeCCCCcEEEEeCCCCcEEEEEeccCC-CeeEE-EEEecCc-eeeeccCCCc
Q 014475          260 HIIGSLSDHSK--AVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKG-PVNNI-LVVRRPL-YLNLGSFSNP  333 (424)
Q Consensus       260 ~~~~~~~~~~~--~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~-~v~~l-~~s~~~~-~l~~~~~d~~  333 (424)
                      ..+..-..+..  ......|.| ..++++|-.-..|-|+|-..++.+..+..... .|.++ .|+|-+. .++.++..|.
T Consensus       409 ~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gk  488 (498)
T KOG4328|consen  409 GTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSSGK  488 (498)
T ss_pred             ceeeccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCccccccccceeecccccceeccCCccce
Confidence            11111111212  234568999 89999999999999999998888888765443 55554 7999887 4555667788


Q ss_pred             eeeccCC
Q 014475          334 HTSSRRH  340 (424)
Q Consensus       334 i~iw~~~  340 (424)
                      |.+|.-+
T Consensus       489 i~vft~k  495 (498)
T KOG4328|consen  489 IYVFTNK  495 (498)
T ss_pred             EEEEecC
Confidence            9888654

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.94  E-value=2.1e-24  Score=197.77  Aligned_cols=254  Identities=17%  Similarity=0.214  Sum_probs=205.2

Q ss_pred             eeecCCCCeeEEEECCCCCEEEEecCCCcEEEEEccCc-ceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCc
Q 014475           75 VKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASG-RLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLT  153 (424)
Q Consensus        75 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~  153 (424)
                      .+..|....+.++|.|+|.+|.+++.||.|++|+..+. +....+..+...|.+++..  +.+|++|+.+++|.+|.+..
T Consensus         8 lRyaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~--s~~f~~~s~~~tv~~y~fps   85 (933)
T KOG1274|consen    8 LRYAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACY--SNHFLTGSEQNTVLRYKFPS   85 (933)
T ss_pred             chhhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeec--ccceEEeeccceEEEeeCCC
Confidence            44578888999999999999999999999999998766 4444444477788888775  55899999999999999965


Q ss_pred             ccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeee-cCcceeEEEECCCCCE
Q 014475          154 VFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHV  232 (424)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~  232 (424)
                      +.           .-..+....-++++++++.+|  ++++.|+.|-.|++-+..+......+. |.++|.++.++|.+++
T Consensus        86 ~~-----------~~~iL~Rftlp~r~~~v~g~g--~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~f  152 (933)
T KOG1274|consen   86 GE-----------EDTILARFTLPIRDLAVSGSG--KMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNF  152 (933)
T ss_pred             CC-----------ccceeeeeeccceEEEEecCC--cEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCE
Confidence            32           112234456789999999988  899999999999999999887777776 9999999999999999


Q ss_pred             EEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCCCcEEEEEec--c
Q 014475          233 FYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRL--A  309 (424)
Q Consensus       233 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~~~~~~~--~  309 (424)
                      ||+.+.||.+++||++++..............+. ....++.++|+| +..++..+.|+.|++|+...++....+..  +
T Consensus       153 LAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~-~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~  231 (933)
T KOG1274|consen  153 LAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFI-LSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLS  231 (933)
T ss_pred             EEEEecCceEEEEEcccchhhhhcccCCcccccc-ccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeeccccc
Confidence            9999999999999999875432211111111111 145677899999 78888888999999999999998887764  3


Q ss_pred             CCCeeEEEEEecCceeeeccCCCceeeccCCCCCC
Q 014475          310 KGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGSQL  344 (424)
Q Consensus       310 ~~~v~~l~~s~~~~~l~~~~~d~~i~iw~~~~~~~  344 (424)
                      ...+..+.|+|+|+|||+++.||.|.+||..+.+.
T Consensus       232 ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~~  266 (933)
T KOG1274|consen  232 SSKFSDLQWSPNGKYIAASTLDGQILVWNVDTHER  266 (933)
T ss_pred             ccceEEEEEcCCCcEEeeeccCCcEEEEecccchh
Confidence            34599999999999999999999999999996443

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.94  E-value=1.6e-24  Score=175.68  Aligned_cols=272  Identities=17%  Similarity=0.236  Sum_probs=203.0

Q ss_pred             EEEeecCCCCCceEEEeCCCCceEE--Eee--CCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCce---e-
Q 014475            3 LLIASSSVADTGIGCWDLESGAEQL--RYK--SCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQV---E-   74 (424)
Q Consensus         3 ~~lat~~~~dg~i~vwd~~~~~~~~--~~~--~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~---~-   74 (424)
                      ..|||++ .|++|+||+++.-....  .++  -...|+   +.+.  |.||.+.++++.....++++|.+.+.+-   . 
T Consensus        99 K~lat~~-~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhp---T~V~--FapDc~s~vv~~~~g~~l~vyk~~K~~dG~~~~  172 (420)
T KOG2096|consen   99 KKLATIS-GDRSIRLWDVRDFENKEHRCIRQNVEYDHP---TRVV--FAPDCKSVVVSVKRGNKLCVYKLVKKTDGSGSH  172 (420)
T ss_pred             ceeEEEe-CCceEEEEecchhhhhhhhHhhccccCCCc---eEEE--ECCCcceEEEEEccCCEEEEEEeeecccCCCCc
Confidence            4689999 99999999988633221  111  111233   3444  9999999888877768999998764331   1 


Q ss_pred             ---------eeecCCCCeeEEEECCCCCEEEEecCCCcEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEeeCCCc
Q 014475           75 ---------VKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGC  145 (424)
Q Consensus        75 ---------~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~  145 (424)
                               +...|.-++..+-...++.+|++++.|..|.+|+++ |+.+..+......-+..+.+|+|+++++++..--
T Consensus       173 ~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP~GRFia~~gFTpD  251 (420)
T KOG2096|consen  173 HFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVSPDGRFIAVSGFTPD  251 (420)
T ss_pred             ccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-CceeeeeccccccccceeeCCCCcEEEEecCCCC
Confidence                     122345577778888889999999999999999998 9888888777777788999999999999999889


Q ss_pred             EEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCC-------Cceeeeee--
Q 014475          146 VRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLK-------GRLLRNIV--  216 (424)
Q Consensus       146 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~-------~~~~~~~~--  216 (424)
                      |++|.+--...   .....-..+..+++|+..|..++|+++.  ..+++.+.||++++||.+-       .+.++...  
T Consensus       252 VkVwE~~f~kd---G~fqev~rvf~LkGH~saV~~~aFsn~S--~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~p  326 (420)
T KOG2096|consen  252 VKVWEPIFTKD---GTFQEVKRVFSLKGHQSAVLAAAFSNSS--TRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAP  326 (420)
T ss_pred             ceEEEEEeccC---cchhhhhhhheeccchhheeeeeeCCCc--ceeEEEecCCcEEEeeccceEecCCCchHhhcCCcc
Confidence            99998732111   0112233456789999999999999998  8999999999999999752       22222221  


Q ss_pred             ---cCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcE
Q 014475          217 ---FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMV  292 (424)
Q Consensus       217 ---~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i  292 (424)
                         ..+....+.++|+|+.|+++. ...+.++..++++        ..-..-..|...|.+++|++ |+++++++ |..+
T Consensus       327 l~aag~~p~RL~lsP~g~~lA~s~-gs~l~~~~se~g~--------~~~~~e~~h~~~Is~is~~~~g~~~atcG-dr~v  396 (420)
T KOG2096|consen  327 LHAAGSEPVRLELSPSGDSLAVSF-GSDLKVFASEDGK--------DYPELEDIHSTTISSISYSSDGKYIATCG-DRYV  396 (420)
T ss_pred             hhhcCCCceEEEeCCCCcEEEeec-CCceEEEEcccCc--------cchhHHHhhcCceeeEEecCCCcEEeeec-ceee
Confidence               123345889999999888765 4579999998875        22223346999999999999 99999997 6778


Q ss_pred             EEEe
Q 014475          293 RVWD  296 (424)
Q Consensus       293 ~iwd  296 (424)
                      +++.
T Consensus       397 rv~~  400 (420)
T KOG2096|consen  397 RVIR  400 (420)
T ss_pred             eeec
Confidence            8876

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.94  E-value=1.2e-24  Score=176.74  Aligned_cols=272  Identities=18%  Similarity=0.239  Sum_probs=214.6

Q ss_pred             eeecCCCccccCCCCceeEEEEECCCCc--------------eeeeecCCCCeeEEEEC-------CCCCEEEEecCCCc
Q 014475           45 RFLASSQLREQPSASSGSILYWSWSKPQ--------------VEVKSLPAEPIKPIAAN-------SHGTYIAGGGQSGD  103 (424)
Q Consensus        45 ~~~~~~~~l~~~~~~~g~i~vwd~~~~~--------------~~~~~~~~~~v~~~~~s-------~~~~~l~~~~~dg~  103 (424)
                      +|+|||..+++.+.| ..+.+|++...-              ...+......|...+|-       |+..++|+.+.+.-
T Consensus        56 kWSPDGSciL~~sed-n~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr~~P  134 (406)
T KOG2919|consen   56 KWSPDGSCILSLSED-NCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSRDQP  134 (406)
T ss_pred             eeCCCCceEEeeccc-CeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeeccccCc
Confidence            399999999999998 999999985311              22333446677777774       67889999999999


Q ss_pred             EEEEEccCcceeeeecc--ccC---CeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCce
Q 014475          104 IYMWEVASGRLLKKWHA--HYR---AVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRI  178 (424)
Q Consensus       104 v~iwd~~~~~~~~~~~~--~~~---~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i  178 (424)
                      |++||.-+|+...++++  |..   ...+++|+|||.+|++|.. ..|++||+......+...   ....+...+..+-|
T Consensus       135 Ih~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGyk-rcirvFdt~RpGr~c~vy---~t~~~~k~gq~gii  210 (406)
T KOG2919|consen  135 IHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGYK-RCIRVFDTSRPGRDCPVY---TTVTKGKFGQKGII  210 (406)
T ss_pred             eeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeeccc-ceEEEeeccCCCCCCcch---hhhhccccccccee
Confidence            99999999998888754  333   4568999999999998764 589999994422211111   11111123457788


Q ss_pred             eEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeee-cCcceeEEEECCCCCEEEEEeC-CCcEEEEEcCCCCCCCCC
Q 014475          179 TDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYAGSR-DGSIYIAALNAESPSTSS  256 (424)
Q Consensus       179 ~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~  256 (424)
                      .+++|+|... ..++.++...++-|+.-..+.++..+. |.+.|+.++|.++|+.|++|.. +..|..||++...     
T Consensus       211 sc~a~sP~~~-~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~-----  284 (406)
T KOG2919|consen  211 SCFAFSPMDS-KTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSR-----  284 (406)
T ss_pred             eeeeccCCCC-cceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhcc-----
Confidence            9999999864 689999999999999988888888776 8999999999999999999875 6789999999875     


Q ss_pred             cCceeeeeecccCc-CeEEEEe--cC-CCEEEEeCCCCcEEEEeCCC-CcEEEEEeccCCCeeEEEEEecCceeeeccC
Q 014475          257 YGMHIIGSLSDHSK-AVTCLAY--ST-GDLLISGSEDGMVRVWDPIT-HNIVRMFRLAKGPVNNILVVRRPLYLNLGSF  330 (424)
Q Consensus       257 ~~~~~~~~~~~~~~-~i~~~~~--~~-~~~l~t~~~dg~i~iwd~~~-~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~  330 (424)
                         .++..+..|.. .-..|.|  .| +++|++|+.||.|++||++. +..+..+..|...++.++++|--.++++++.
T Consensus       285 ---~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~mpilatssG  360 (406)
T KOG2919|consen  285 ---DPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIMPILATSSG  360 (406)
T ss_pred             ---chhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCcccccccccccccceecCcccceeeeccC
Confidence               56667777765 3344555  45 99999999999999999998 7778888889999999999999888887754

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.93  E-value=9.4e-25  Score=180.82  Aligned_cols=241  Identities=18%  Similarity=0.276  Sum_probs=189.1

Q ss_pred             cCCCCeeEEEECCCC--CEEEEecCCCcEEEEEccC----------------cceeeeeccccCCeEEEEEcc-CCcEEE
Q 014475           78 LPAEPIKPIAANSHG--TYIAGGGQSGDIYMWEVAS----------------GRLLKKWHAHYRAVTCLVFSE-DGSFLI  138 (424)
Q Consensus        78 ~~~~~v~~~~~s~~~--~~l~~~~~dg~v~iwd~~~----------------~~~~~~~~~~~~~i~~~~~~~-~~~~l~  138 (424)
                      .|.+.++.+.-++-+  .+.++=+..|.|.||++..                .+++.++.+|...=..++|+| ....|+
T Consensus       149 ~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~Ll  228 (440)
T KOG0302|consen  149 PHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLL  228 (440)
T ss_pred             ccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccccc
Confidence            356677777777644  4556667889999999853                255677889999999999999 333488


Q ss_pred             EeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCC---ceeeee
Q 014475          139 SGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKG---RLLRNI  215 (424)
Q Consensus       139 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~---~~~~~~  215 (424)
                      +|.--+.|++|...++.=.        .-...+.+|+..|-.++|+|... ..|++|+.||+|+|||++.+   .++..-
T Consensus       229 sGDc~~~I~lw~~~~g~W~--------vd~~Pf~gH~~SVEDLqWSptE~-~vfaScS~DgsIrIWDiRs~~~~~~~~~k  299 (440)
T KOG0302|consen  229 SGDCVKGIHLWEPSTGSWK--------VDQRPFTGHTKSVEDLQWSPTED-GVFASCSCDGSIRIWDIRSGPKKAAVSTK  299 (440)
T ss_pred             cCccccceEeeeeccCcee--------ecCccccccccchhhhccCCccC-ceEEeeecCceEEEEEecCCCccceeEee
Confidence            8888889999998663211        11234567999999999999876 89999999999999999988   344444


Q ss_pred             ecCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC--CCEEEEeCCCCcEE
Q 014475          216 VFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST--GDLLISGSEDGMVR  293 (424)
Q Consensus       216 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~l~t~~~dg~i~  293 (424)
                      .|++.|+.+.|+....+|++|+.||.++|||++.-+..      +++..++-|..+|+++.|+|  ...|++++.|..|.
T Consensus       300 Ah~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~------~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~Qit  373 (440)
T KOG0302|consen  300 AHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSG------QPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQIT  373 (440)
T ss_pred             ccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCC------CcceeEEeccCCeeEEEeccccCceEEeccCCCcEE
Confidence            48999999999998889999999999999999986543      67889999999999999999  78899999999999


Q ss_pred             EEeCCCCc----------------EEEEEeccC--CCeeEEEEEecC-ceeeeccCCCc
Q 014475          294 VWDPITHN----------------IVRMFRLAK--GPVNNILVVRRP-LYLNLGSFSNP  333 (424)
Q Consensus       294 iwd~~~~~----------------~~~~~~~~~--~~v~~l~~s~~~-~~l~~~~~d~~  333 (424)
                      +||+..-.                +.+-+-.|.  ..+..+.|+++- -+|++.+.||.
T Consensus       374 iWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dGf  432 (440)
T KOG0302|consen  374 IWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDGF  432 (440)
T ss_pred             EEEeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccce
Confidence            99985311                111222354  478999999864 46777777774

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.93  E-value=1.1e-24  Score=192.01  Aligned_cols=285  Identities=16%  Similarity=0.166  Sum_probs=208.6

Q ss_pred             CCCccccCCCCceeEEEEECCCCcee-------eeecCCCCeeEEEECCCCCEEEEecCCCcEEEEEccCcceeee--ec
Q 014475           49 SSQLREQPSASSGSILYWSWSKPQVE-------VKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKK--WH  119 (424)
Q Consensus        49 ~~~~l~~~~~~~g~i~vwd~~~~~~~-------~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~--~~  119 (424)
                      ..+.++..+.++|.|.++|.......       ....|...|..+.|-|....|++++.|.++++||+++.+++..  +.
T Consensus        62 n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~  141 (720)
T KOG0321|consen   62 NKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNL  141 (720)
T ss_pred             CccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeec
Confidence            33444444444599999998754433       2245889999999999778899999999999999999988776  88


Q ss_pred             cccCCeEEEEEcc-CCcEEEEeeCCCcEEEEeCCcccchhc----------------ccccccceEEeecCCcCceeE--
Q 014475          120 AHYRAVTCLVFSE-DGSFLISGSEDGCVRIWSLLTVFEECE----------------SQRASHLYLHSFTGHTLRITD--  180 (424)
Q Consensus       120 ~~~~~i~~~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~i~~--  180 (424)
                      +|...|.+++|.| |...|++|+.||.|.|||++-......                ........+.....+...|.+  
T Consensus       142 GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssv  221 (720)
T KOG0321|consen  142 GHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSV  221 (720)
T ss_pred             ccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeee
Confidence            9999999999999 566789999999999999975331100                000111122333445555555  


Q ss_pred             -EEEEEcCceeEEEEEeC-CCcEEEEecCCCceeeeee---------c---CcceeEEEECCCCCEEEEEeCCCcEEEEE
Q 014475          181 -IVIGYGGVSATIVSASE-DRTCKVWSLLKGRLLRNIV---------F---PSVIDAIALDPAEHVFYAGSRDGSIYIAA  246 (424)
Q Consensus       181 -~~~~~~~~~~~l~~~~~-d~~v~iwd~~~~~~~~~~~---------~---~~~i~~~~~~~~~~~l~~~~~dg~i~i~d  246 (424)
                       +.+..|.  ..|++++. |+.|++||+++........         +   ...+.++..+..|.+|++.+.|+.|++|+
T Consensus       222 Tvv~fkDe--~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~yn  299 (720)
T KOG0321|consen  222 TVVLFKDE--STLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYN  299 (720)
T ss_pred             EEEEEecc--ceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEe
Confidence             4455555  78888887 9999999998754433221         1   24578888888999999999999999999


Q ss_pred             cCCCCCCCCCcCceeeeeecccCcCeEE--EEecC-CCEEEEeCCCCcEEEEeCCCCc-EEEEEeccCCCeeEEEEEecC
Q 014475          247 LNAESPSTSSYGMHIIGSLSDHSKAVTC--LAYST-GDLLISGSEDGMVRVWDPITHN-IVRMFRLAKGPVNNILVVRRP  322 (424)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~--~~~~~-~~~l~t~~~dg~i~iwd~~~~~-~~~~~~~~~~~v~~l~~s~~~  322 (424)
                      +.....       .++..+.++...-..  -..+| +.++++|+.|....+|.+.+.+ ....+.+|.-.|++++|.|..
T Consensus       300 m~s~s~-------sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~  372 (720)
T KOG0321|consen  300 MRSLSI-------SPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSA  372 (720)
T ss_pred             ccccCc-------CchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeecccc
Confidence            988652       334444444322111  23456 9999999999999999998765 455677899999999999743


Q ss_pred             -ceeeeccCCCceeeccCCCC
Q 014475          323 -LYLNLGSFSNPHTSSRRHGS  342 (424)
Q Consensus       323 -~~l~~~~~d~~i~iw~~~~~  342 (424)
                       .-++++++|..+++|++..+
T Consensus       373 ~t~v~TcSdD~~~kiW~l~~~  393 (720)
T KOG0321|consen  373 TTPVATCSDDFRVKIWRLSNG  393 (720)
T ss_pred             CCCceeeccCcceEEEeccCc
Confidence             34666799999999999644

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.93  E-value=1.9e-24  Score=185.10  Aligned_cols=256  Identities=17%  Similarity=0.278  Sum_probs=206.8

Q ss_pred             EEEeecCCCCCceEEEeCCCCc---eEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCcee-eeec
Q 014475            3 LLIASSSVADTGIGCWDLESGA---EQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVE-VKSL   78 (424)
Q Consensus         3 ~~lat~~~~dg~i~vwd~~~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~-~~~~   78 (424)
                      +.+|+.+ .|+.|++|.-. |+   ... ....  ..+.-.|++  ......+++++|.. +.|+|||++...+. ....
T Consensus        48 lvvas~~-gdk~~~~~~K~-g~~~~Vp~-~~k~--~gd~~~Cv~--~~s~S~y~~sgG~~-~~Vkiwdl~~kl~hr~lkd  119 (673)
T KOG4378|consen   48 LVVASMA-GDKVMRIKEKD-GKTPEVPR-VRKL--TGDNAFCVA--CASQSLYEISGGQS-GCVKIWDLRAKLIHRFLKD  119 (673)
T ss_pred             EEEeecC-CceeEEEeccc-CCCCccce-eecc--ccchHHHHh--hhhcceeeeccCcC-ceeeehhhHHHHHhhhccC
Confidence            4566667 89999999843 43   111 1111  112445555  55566889999988 99999999855443 3456


Q ss_pred             CCCCeeEEEECCCCCEEEEecCCCcEEEEEccCcceeeeeccc-cCCeEEEEEccCCcE-EEEeeCCCcEEEEeCCcccc
Q 014475           79 PAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAH-YRAVTCLVFSEDGSF-LISGSEDGCVRIWSLLTVFE  156 (424)
Q Consensus        79 ~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~-~~~i~~~~~~~~~~~-l~s~~~dg~i~iwd~~~~~~  156 (424)
                      |...|+++.++....|||+++..|.|.|..+.++.....+... ...|.-+.|+|..++ |.+++.+|.|.+||+..   
T Consensus       120 h~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g---  196 (673)
T KOG4378|consen  120 HQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQG---  196 (673)
T ss_pred             CcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccC---
Confidence            8899999999999999999999999999999999887777644 455678999996654 66889999999999954   


Q ss_pred             hhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeeecCcceeEEEECCCCCEEEEE
Q 014475          157 ECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAG  236 (424)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~  236 (424)
                             ......-...|..+...++|+|..+ .+|++.+.|..|.+||.+..+....+....+...++|.++|.+|++|
T Consensus       197 -------~sp~~~~~~~HsAP~~gicfspsne-~l~vsVG~Dkki~~yD~~s~~s~~~l~y~~Plstvaf~~~G~~L~aG  268 (673)
T KOG4378|consen  197 -------MSPIFHASEAHSAPCRGICFSPSNE-ALLVSVGYDKKINIYDIRSQASTDRLTYSHPLSTVAFSECGTYLCAG  268 (673)
T ss_pred             -------CCcccchhhhccCCcCcceecCCcc-ceEEEecccceEEEeecccccccceeeecCCcceeeecCCceEEEee
Confidence                   2223444567999999999999876 88999999999999999999999999999999999999999999999


Q ss_pred             eCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecCCCEEEE
Q 014475          237 SRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTGDLLIS  285 (424)
Q Consensus       237 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~t  285 (424)
                      +..|.|..||++...        .++.....|...|++++|-|...+++
T Consensus       269 ~s~G~~i~YD~R~~k--------~Pv~v~sah~~sVt~vafq~s~tvlt  309 (673)
T KOG4378|consen  269 NSKGELIAYDMRSTK--------APVAVRSAHDASVTRVAFQPSPTVLT  309 (673)
T ss_pred             cCCceEEEEecccCC--------CCceEeeecccceeEEEeeecceeee
Confidence            999999999999975        77889999999999999988434443

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.93  E-value=2.7e-24  Score=175.98  Aligned_cols=280  Identities=21%  Similarity=0.273  Sum_probs=203.9

Q ss_pred             CeEEEeecCCCCCceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCceeee----
Q 014475            1 MELLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVK----   76 (424)
Q Consensus         1 ~e~~lat~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~----   76 (424)
                      +|..+|++- ..|.|++||..+|+.+..++++..+.+.+..+.  -+ ....+.+++.| |+|++||++......+    
T Consensus        39 ~e~~vav~l-Sngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~--~d-s~h~v~s~ssD-G~Vr~wD~Rs~~e~a~~~~~  113 (376)
T KOG1188|consen   39 FETAVAVSL-SNGSVRLYDKGTGQLLEEFKGPPATTNGVRFIS--CD-SPHGVISCSSD-GTVRLWDIRSQAESARISWT  113 (376)
T ss_pred             cceeEEEEe-cCCeEEEEeccchhhhheecCCCCcccceEEec--CC-CCCeeEEeccC-CeEEEEEeecchhhhheecc
Confidence            367889998 999999999999999999999988888777544  11 45566777776 9999999986543322    


Q ss_pred             ecCCCCeeEEEECCCCCEEEEecC----CCcEEEEEccCcce-eeee-ccccCCeEEEEEcc-CCcEEEEeeCCCcEEEE
Q 014475           77 SLPAEPIKPIAANSHGTYIAGGGQ----SGDIYMWEVASGRL-LKKW-HAHYRAVTCLVFSE-DGSFLISGSEDGCVRIW  149 (424)
Q Consensus        77 ~~~~~~v~~~~~s~~~~~l~~~~~----dg~v~iwd~~~~~~-~~~~-~~~~~~i~~~~~~~-~~~~l~s~~~dg~i~iw  149 (424)
                      .....+..|++.+..++.+++|+.    +-.|.+||++..+. +..+ ..|...|++++|+| +.++|++||.||.|.+|
T Consensus       114 ~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlf  193 (376)
T KOG1188|consen  114 QQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLF  193 (376)
T ss_pred             CCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEee
Confidence            223468888888888889998854    56799999998766 5554 57999999999999 67899999999999999


Q ss_pred             eCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeeecCcc---------
Q 014475          150 SLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSV---------  220 (424)
Q Consensus       150 d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~---------  220 (424)
                      |+....        ....+...-.|...|..+.|..++. +.+.+-+...+..+|+++.+.....+..+..         
T Consensus       194 D~~~d~--------EeDaL~~viN~~sSI~~igw~~~~y-krI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~  264 (376)
T KOG1188|consen  194 DTKKDN--------EEDALLHVINHGSSIHLIGWLSKKY-KRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKED  264 (376)
T ss_pred             ecCCCc--------chhhHHHhhcccceeeeeeeecCCc-ceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhh
Confidence            996531        1222333445778899999998865 5789999999999999998876655543210         


Q ss_pred             --eeEE-EECC-CCCEEEEEeC-CCcEEEEEcCCCCCCCCCcCceeeeeecc-cCcCeEEEEecC-CCEEEEeCCCCcEE
Q 014475          221 --IDAI-ALDP-AEHVFYAGSR-DGSIYIAALNAESPSTSSYGMHIIGSLSD-HSKAVTCLAYST-GDLLISGSEDGMVR  293 (424)
Q Consensus       221 --i~~~-~~~~-~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~-~~~l~t~~~dg~i~  293 (424)
                        -.-+ +.+| +...+++++. -+...++-+.......   ..+.+..+.+ |..-|+++.|.. +.++.||++||.+.
T Consensus       265 ~~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~---~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~  341 (376)
T KOG1188|consen  265 NCDYVINEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGS---LLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQ  341 (376)
T ss_pred             hhhheeecccCCCcceEEEeccccCceeEEEeeeccccc---ccCccccccCCcHHHHHHHhhhcccceeeccCCCceEE
Confidence              0011 1224 3444444443 5666666554321111   0133445555 777888888877 99999999999999


Q ss_pred             EEeC
Q 014475          294 VWDP  297 (424)
Q Consensus       294 iwd~  297 (424)
                      +|..
T Consensus       342 ~Wk~  345 (376)
T KOG1188|consen  342 AWKV  345 (376)
T ss_pred             EEec
Confidence            9985

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.93  E-value=5.2e-24  Score=186.38  Aligned_cols=272  Identities=16%  Similarity=0.243  Sum_probs=210.6

Q ss_pred             EEEeecCCCCCceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccc--cCCCC---------------------
Q 014475            3 LLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLRE--QPSAS---------------------   59 (424)
Q Consensus         3 ~~lat~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~--~~~~~---------------------   59 (424)
                      ..||+|+ .||+|+||.+.+|.+++++.-.    ..|.|++  |.|.+..-+  ++-..                     
T Consensus       413 ~wlasGs-dDGtvriWEi~TgRcvr~~~~d----~~I~~va--w~P~~~~~vLAvA~~~~~~ivnp~~G~~~e~~~t~el  485 (733)
T KOG0650|consen  413 EWLASGS-DDGTVRIWEIATGRCVRTVQFD----SEIRSVA--WNPLSDLCVLAVAVGECVLIVNPIFGDRLEVGPTKEL  485 (733)
T ss_pred             ceeeecC-CCCcEEEEEeecceEEEEEeec----ceeEEEE--ecCCCCceeEEEEecCceEEeCccccchhhhcchhhh
Confidence            3699999 9999999999999999988643    4578888  888765422  22221                     


Q ss_pred             ----------ceeEEEEECCCC-----ceeeeecCCCCeeEEEECCCCCEEEEecCC---CcEEEEEccCcceeeeeccc
Q 014475           60 ----------SGSILYWSWSKP-----QVEVKSLPAEPIKPIAANSHGTYIAGGGQS---GDIYMWEVASGRLLKKWHAH  121 (424)
Q Consensus        60 ----------~g~i~vwd~~~~-----~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---g~v~iwd~~~~~~~~~~~~~  121 (424)
                                ++.+..|.-...     .+.....|..+|..+.|+..|.||++...+   ..|.|+++.......-|+..
T Consensus       486 l~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~sQ~PF~ks  565 (733)
T KOG0650|consen  486 LASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRKSQSPFRKS  565 (733)
T ss_pred             hhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEEecccccccCchhhc
Confidence                      122233432211     022445578899999999999999997553   46999999888777777777


Q ss_pred             cCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcE
Q 014475          122 YRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTC  201 (424)
Q Consensus       122 ~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v  201 (424)
                      .+.|.++.|+|...+|++++.. .|++||+.           +...++.+......|..++++|.|  ..|+.++.|+.+
T Consensus       566 kG~vq~v~FHPs~p~lfVaTq~-~vRiYdL~-----------kqelvKkL~tg~kwiS~msihp~G--Dnli~gs~d~k~  631 (733)
T KOG0650|consen  566 KGLVQRVKFHPSKPYLFVATQR-SVRIYDLS-----------KQELVKKLLTGSKWISSMSIHPNG--DNLILGSYDKKM  631 (733)
T ss_pred             CCceeEEEecCCCceEEEEecc-ceEEEehh-----------HHHHHHHHhcCCeeeeeeeecCCC--CeEEEecCCCee
Confidence            8889999999998899988864 89999994           344556666677889999999998  789999999999


Q ss_pred             EEEecCCC-ceeeeee-cCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcC----eEEE
Q 014475          202 KVWSLLKG-RLLRNIV-FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKA----VTCL  275 (424)
Q Consensus       202 ~iwd~~~~-~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~----i~~~  275 (424)
                      ..+|+.-. ++.+.+. |...++++++++.-.+|++|+.||.+.++.-.--.-.......-++..+++|...    |..+
T Consensus       632 ~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~  711 (733)
T KOG0650|consen  632 CWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDT  711 (733)
T ss_pred             EEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEee
Confidence            99999754 4555555 8899999999999999999999999998864332222222223567788888766    8999


Q ss_pred             EecC-CCEEEEeCCCCcEEEE
Q 014475          276 AYST-GDLLISGSEDGMVRVW  295 (424)
Q Consensus       276 ~~~~-~~~l~t~~~dg~i~iw  295 (424)
                      .|+| ..+|++++.||+|++|
T Consensus       712 ~wHP~qpWLfsAGAd~tirlf  732 (733)
T KOG0650|consen  712 IWHPRQPWLFSAGADGTIRLF  732 (733)
T ss_pred             cccCCCceEEecCCCceEEee
Confidence            9999 9999999999999998

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.92  E-value=4.7e-24  Score=180.35  Aligned_cols=236  Identities=17%  Similarity=0.253  Sum_probs=185.7

Q ss_pred             CCCccccCCCCceeEEEEECCCCce-----ee-----------------eecCCCCeeEEEECCC-CCEEEEecCCCcEE
Q 014475           49 SSQLREQPSASSGSILYWSWSKPQV-----EV-----------------KSLPAEPIKPIAANSH-GTYIAGGGQSGDIY  105 (424)
Q Consensus        49 ~~~~l~~~~~~~g~i~vwd~~~~~~-----~~-----------------~~~~~~~v~~~~~s~~-~~~l~~~~~dg~v~  105 (424)
                      .|+++|+|..+ ..|.|||++-...     .+                 ...|.+.|.+++|+.. .+.||+|+.|.+|+
T Consensus       191 ~gNyvAiGtmd-p~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~  269 (463)
T KOG0270|consen  191 AGNYVAIGTMD-PEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVK  269 (463)
T ss_pred             CcceEEEeccC-ceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEE
Confidence            47899999998 8999999863210     00                 1246778889999874 56899999999999


Q ss_pred             EEEccCcceeeeeccccCCeEEEEEcc-CCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEE
Q 014475          106 MWEVASGRLLKKWHAHYRAVTCLVFSE-DGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIG  184 (424)
Q Consensus       106 iwd~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  184 (424)
                      +||+.++++..++..|.+.|.++.|+| ....|++|+.|++|.+.|.+....        ....   -...+.|-.++|.
T Consensus       270 lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~--------s~~~---wk~~g~VEkv~w~  338 (463)
T KOG0270|consen  270 LWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSN--------SGKE---WKFDGEVEKVAWD  338 (463)
T ss_pred             EEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccc--------cCce---EEeccceEEEEec
Confidence            999999999999999999999999999 678899999999999999975111        1111   1235678889999


Q ss_pred             EcCceeEEEEEeCCCcEEEEecCCC-ceeeeee-cCcceeEEEECCC-CCEEEEEeCCCcEEEEEcCCCCCCCCCcCcee
Q 014475          185 YGGVSATIVSASEDRTCKVWSLLKG-RLLRNIV-FPSVIDAIALDPA-EHVFYAGSRDGSIYIAALNAESPSTSSYGMHI  261 (424)
Q Consensus       185 ~~~~~~~l~~~~~d~~v~iwd~~~~-~~~~~~~-~~~~i~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~  261 (424)
                      +... ..+++++.||+|+-+|+|+. +++..+. |.++|.++++++. ..++++++.|+.+.+|++....+..       
T Consensus       339 ~~se-~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~-------  410 (463)
T KOG0270|consen  339 PHSE-NSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKS-------  410 (463)
T ss_pred             CCCc-eeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCcc-------
Confidence            8876 78888999999999999975 7888887 9999999999984 5678899999999999998765321       


Q ss_pred             eeeecccCcCeEEEEecC--CCEEEEeCCCCcEEEEeCCCCcEEE
Q 014475          262 IGSLSDHSKAVTCLAYST--GDLLISGSEDGMVRVWDPITHNIVR  304 (424)
Q Consensus       262 ~~~~~~~~~~i~~~~~~~--~~~l~t~~~dg~i~iwd~~~~~~~~  304 (424)
                      +....-.-+...|.++.|  ...++.|+..+.++|||+.+...+.
T Consensus       411 v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V~  455 (463)
T KOG0270|consen  411 VKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPVR  455 (463)
T ss_pred             cccccccccceeecccCCCcceEEEecCccceEEEeecccChhHH
Confidence            111111113366777777  6788999999999999998876543

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.92  E-value=7e-24  Score=175.68  Aligned_cols=216  Identities=21%  Similarity=0.278  Sum_probs=174.5

Q ss_pred             ccccCCeEEEEEcc--CCcEEEEeeCCCcEEEEeCCcccchh-----cccccccceEEeecCCcCceeEEEEEEcCceeE
Q 014475          119 HAHYRAVTCLVFSE--DGSFLISGSEDGCVRIWSLLTVFEEC-----ESQRASHLYLHSFTGHTLRITDIVIGYGGVSAT  191 (424)
Q Consensus       119 ~~~~~~i~~~~~~~--~~~~l~s~~~dg~i~iwd~~~~~~~~-----~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~  191 (424)
                      .+|.+.++.+...+  +..+.++-+..|.|.||++.......     ........++.++.+|...=..++|+|... ..
T Consensus       148 i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~-g~  226 (440)
T KOG0302|consen  148 IPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKT-GR  226 (440)
T ss_pred             cccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccc-cc
Confidence            35778888888776  44566777889999999996533211     122355667889999999999999999654 56


Q ss_pred             EEEEeCCCcEEEEecCCCceee----eeecCcceeEEEECCC-CCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeec
Q 014475          192 IVSASEDRTCKVWSLLKGRLLR----NIVFPSVIDAIALDPA-EHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLS  266 (424)
Q Consensus       192 l~~~~~d~~v~iwd~~~~~~~~----~~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~  266 (424)
                      |++|..-+.|++|...++.-..    ...|...|..++|+|. ...|++++.||.|+|||++.+..       +.....+
T Consensus       227 LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~-------~~~~~~k  299 (440)
T KOG0302|consen  227 LLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPK-------KAAVSTK  299 (440)
T ss_pred             cccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCc-------cceeEee
Confidence            8899889999999988765322    2228889999999994 56788999999999999999742       2233348


Q ss_pred             ccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCC---CcEEEEEeccCCCeeEEEEEec-CceeeeccCCCceeeccCCC
Q 014475          267 DHSKAVTCLAYST-GDLLISGSEDGMVRVWDPIT---HNIVRMFRLAKGPVNNILVVRR-PLYLNLGSFSNPHTSSRRHG  341 (424)
Q Consensus       267 ~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~---~~~~~~~~~~~~~v~~l~~s~~-~~~l~~~~~d~~i~iw~~~~  341 (424)
                      .|...|+.+.|+. ..+||+|+.||+++|||+++   ++++.+|+-|..+|+++.|+|. ...|++++.|..|.+||+..
T Consensus       300 Ah~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsv  379 (440)
T KOG0302|consen  300 AHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSV  379 (440)
T ss_pred             ccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeec
Confidence            8999999999998 66999999999999999985   6788999999999999999985 46788899999999999974


Q ss_pred             C
Q 014475          342 S  342 (424)
Q Consensus       342 ~  342 (424)
                      .
T Consensus       380 E  380 (440)
T KOG0302|consen  380 E  380 (440)
T ss_pred             c
Confidence            4

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.92  E-value=2.6e-23  Score=176.61  Aligned_cols=248  Identities=14%  Similarity=0.209  Sum_probs=203.8

Q ss_pred             CCCeeEEEECCCCCEEEEecCCCcEEEEEccC--cceeeeeccccCCeEEEEEccCCc-EEEEeeCCCcEEEEeCCcccc
Q 014475           80 AEPIKPIAANSHGTYIAGGGQSGDIYMWEVAS--GRLLKKWHAHYRAVTCLVFSEDGS-FLISGSEDGCVRIWSLLTVFE  156 (424)
Q Consensus        80 ~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~--~~~~~~~~~~~~~i~~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~  156 (424)
                      .++|+++.|+|....+++++.||.++||.+..  ...++.+.-...+|.+.+|.|+|. .+++++....++.||+.+   
T Consensus       213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~---  289 (514)
T KOG2055|consen  213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLET---  289 (514)
T ss_pred             cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeeccc---
Confidence            57899999999999999999999999998853  345667766778999999999998 899999999999999977   


Q ss_pred             hhcccccccceEEeecCCc-CceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeeecCcceeEEEECCCCCEEEE
Q 014475          157 ECESQRASHLYLHSFTGHT-LRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYA  235 (424)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~  235 (424)
                            .+...+....++. ..+....+++++  ++|+..+..|.|.+....+++.+..+..++.+..++|+.+++.|++
T Consensus       290 ------ak~~k~~~~~g~e~~~~e~FeVShd~--~fia~~G~~G~I~lLhakT~eli~s~KieG~v~~~~fsSdsk~l~~  361 (514)
T KOG2055|consen  290 ------AKVTKLKPPYGVEEKSMERFEVSHDS--NFIAIAGNNGHIHLLHAKTKELITSFKIEGVVSDFTFSSDSKELLA  361 (514)
T ss_pred             ------cccccccCCCCcccchhheeEecCCC--CeEEEcccCceEEeehhhhhhhhheeeeccEEeeEEEecCCcEEEE
Confidence                  3333344444443 456667788888  8999999999999999999999999999999999999999999999


Q ss_pred             EeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCc-CeEEEEecC-CCEEEEeCCCCcEEEEeCCC------CcEEEEEe
Q 014475          236 GSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSK-AVTCLAYST-GDLLISGSEDGMVRVWDPIT------HNIVRMFR  307 (424)
Q Consensus       236 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~------~~~~~~~~  307 (424)
                      .+.+|.|++||++..         .++..+....+ .-++++.++ +.+||+|+..|.|.|||.++      .+++..+.
T Consensus       362 ~~~~GeV~v~nl~~~---------~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~d  432 (514)
T KOG2055|consen  362 SGGTGEVYVWNLRQN---------SCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVD  432 (514)
T ss_pred             EcCCceEEEEecCCc---------ceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhh
Confidence            999999999999997         44555443221 235567677 99999999999999999653      46777777


Q ss_pred             ccCCCeeEEEEEecCceeeecc--CCCceeeccCCCCCCCCC
Q 014475          308 LAKGPVNNILVVRRPLYLNLGS--FSNPHTSSRRHGSQLPPP  347 (424)
Q Consensus       308 ~~~~~v~~l~~s~~~~~l~~~~--~d~~i~iw~~~~~~~~~~  347 (424)
                      .-...|+++.|+||.+.||.+|  .+..+++-.+.+...+..
T Consensus       433 NLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsN  474 (514)
T KOG2055|consen  433 NLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSN  474 (514)
T ss_pred             hhheeeeeeeeCcchhhhhhhhhccccceEEEeccceeeecc
Confidence            7778999999999999998877  455688877776554433

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.92  E-value=1.4e-23  Score=170.02  Aligned_cols=243  Identities=17%  Similarity=0.214  Sum_probs=184.3

Q ss_pred             eeEEEECCCCCEEEEecCCCcEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccc
Q 014475           83 IKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQR  162 (424)
Q Consensus        83 v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~  162 (424)
                      ..|+.|++.|.+||+|+.||.|.|||+.+...-+.+.+|..+|.+++|+++|+.|++++.|..|.+||+..+        
T Consensus        26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~g--------   97 (405)
T KOG1273|consen   26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKG--------   97 (405)
T ss_pred             cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCC--------
Confidence            789999999999999999999999999999988899999999999999999999999999999999999663        


Q ss_pred             cccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeee------cCcceeEEEECCCCCEEEEE
Q 014475          163 ASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV------FPSVIDAIALDPAEHVFYAG  236 (424)
Q Consensus       163 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~------~~~~i~~~~~~~~~~~l~~~  236 (424)
                         .+++.+. ..++|+...|+|...+..+++ -.+..-.+-++..++ ...+.      ......+..|.+.|+++++|
T Consensus        98 ---s~l~rir-f~spv~~~q~hp~k~n~~va~-~~~~sp~vi~~s~~~-h~~Lp~d~d~dln~sas~~~fdr~g~yIitG  171 (405)
T KOG1273|consen   98 ---SPLKRIR-FDSPVWGAQWHPRKRNKCVAT-IMEESPVVIDFSDPK-HSVLPKDDDGDLNSSASHGVFDRRGKYIITG  171 (405)
T ss_pred             ---CceeEEE-ccCccceeeeccccCCeEEEE-EecCCcEEEEecCCc-eeeccCCCccccccccccccccCCCCEEEEe
Confidence               2333333 567899999999876444444 334445555554422 11121      11223344688999999999


Q ss_pred             eCCCcEEEEEcCCCCCCCCCcCceeeeeecccC-cCeEEEEecC-CCEEEEeCCCCcEEEEeCCCC-------c--EEEE
Q 014475          237 SRDGSIYIAALNAESPSTSSYGMHIIGSLSDHS-KAVTCLAYST-GDLLISGSEDGMVRVWDPITH-------N--IVRM  305 (424)
Q Consensus       237 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~-------~--~~~~  305 (424)
                      ...|.+.+++..+.         +++..++-.. ..|..+.++. +++|+.-+.|..||.|+++.-       +  +.+.
T Consensus       172 tsKGkllv~~a~t~---------e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K  242 (405)
T KOG1273|consen  172 TSKGKLLVYDAETL---------ECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHK  242 (405)
T ss_pred             cCcceEEEEecchh---------eeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHH
Confidence            99999999999986         5566655544 6788899988 999999999999999998631       1  1111


Q ss_pred             Ee--ccCCCeeEEEEEecCceeeeccC-CCceeeccCCCCCCCCCc
Q 014475          306 FR--LAKGPVNNILVVRRPLYLNLGSF-SNPHTSSRRHGSQLPPPL  348 (424)
Q Consensus       306 ~~--~~~~~v~~l~~s~~~~~l~~~~~-d~~i~iw~~~~~~~~~~~  348 (424)
                      ++  .....-.+++|+.+|.|+++++. -..++||....+.+...+
T Consensus       243 ~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKIL  288 (405)
T KOG1273|consen  243 LQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKIL  288 (405)
T ss_pred             HHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCcceeeee
Confidence            11  11235578899999999987763 345999999877765443

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.91  E-value=7.4e-23  Score=171.27  Aligned_cols=284  Identities=17%  Similarity=0.253  Sum_probs=213.1

Q ss_pred             CceEEecceeecCCC-ccccCCCCceeEEEEECCCCce-------e---eeecCCCCeeEEEECCCCCEEEEecCCCcEE
Q 014475           37 HGLACVGQRFLASSQ-LREQPSASSGSILYWSWSKPQV-------E---VKSLPAEPIKPIAANSHGTYIAGGGQSGDIY  105 (424)
Q Consensus        37 ~~v~~~~~~~~~~~~-~l~~~~~~~g~i~vwd~~~~~~-------~---~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~  105 (424)
                      ..+..+.  |.+++. .++++|.| ..|++|.+...+.       .   ....|...|+++.|+|+|..||+|+.+|.|.
T Consensus        14 ~pv~s~d--fq~n~~~~laT~G~D-~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~   90 (434)
T KOG1009|consen   14 EPVYSVD--FQKNSLNKLATAGGD-KDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVF   90 (434)
T ss_pred             CceEEEE--eccCcccceecccCc-cceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEE
Confidence            4577777  888777 89999998 9999999864321       1   2245899999999999999999999999999


Q ss_pred             EEEcc--------C--------cceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEE
Q 014475          106 MWEVA--------S--------GRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLH  169 (424)
Q Consensus       106 iwd~~--------~--------~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~  169 (424)
                      +|...        +        ....+.+.+|...|..++|+|++.++++++-|..+++||+..           .....
T Consensus        91 lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~-----------G~l~~  159 (434)
T KOG1009|consen   91 LWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHA-----------GQLLA  159 (434)
T ss_pred             EEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEecc-----------ceeEe
Confidence            99865        2        123455678999999999999999999999999999999944           56678


Q ss_pred             eecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeee--------------------c----CcceeEEE
Q 014475          170 SFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV--------------------F----PSVIDAIA  225 (424)
Q Consensus       170 ~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~--------------------~----~~~i~~~~  225 (424)
                      .+..|...+..++|.|-+  +++++-+.|...+.+.+...+.+....                    |    +.-...++
T Consensus       160 ~~~dh~~yvqgvawDpl~--qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRls  237 (434)
T KOG1009|consen  160 ILDDHEHYVQGVAWDPLN--QYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLS  237 (434)
T ss_pred             eccccccccceeecchhh--hhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcc
Confidence            889999999999999988  899999988877777765443332221                    1    12245678


Q ss_pred             ECCCCCEEEEEeC----CC-----cEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-----------------
Q 014475          226 LDPAEHVFYAGSR----DG-----SIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-----------------  279 (424)
Q Consensus       226 ~~~~~~~l~~~~~----dg-----~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-----------------  279 (424)
                      |+|+|.++++...    .+     ..++|+-....        ++...+.....+...+.++|                 
T Consensus       238 fTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~--------rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~l  309 (434)
T KOG1009|consen  238 FTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLK--------RPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVL  309 (434)
T ss_pred             cCCCCcEEEcccceeeeCCceeeceeEeecccccc--------CceeecCCCCcceEEEEeeeeEEEecccccccccccc
Confidence            9999999987542    22     33455544322        33444444444444444443                 


Q ss_pred             --CCEEEEeCCCCcEEEEeCCCCcEEEEEe-ccCCCeeEEEEEecCceeeeccCCCceeeccCCCCCCC
Q 014475          280 --GDLLISGSEDGMVRVWDPITHNIVRMFR-LAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGSQLP  345 (424)
Q Consensus       280 --~~~l~t~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~l~~s~~~~~l~~~~~d~~i~iw~~~~~~~~  345 (424)
                        +-.++.++ ...|.+||.++..++.... -|-.+++.++|++||.+|+..|.||-.-+-..++.++.
T Consensus       310 pyrlvfaiAt-~~svyvydtq~~~P~~~v~nihy~~iTDiaws~dg~~l~vSS~DGyCS~vtfe~~elg  377 (434)
T KOG1009|consen  310 PYRLVFAIAT-KNSVYVYDTQTLEPLAVVDNIHYSAITDIAWSDDGSVLLVSSTDGFCSLVTFEPWELG  377 (434)
T ss_pred             ccceEEEEee-cceEEEeccccccceEEEeeeeeeeecceeecCCCcEEEEeccCCceEEEEEcchhcc
Confidence              23455554 5579999999988887654 47889999999999999999999998887777766654

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.91  E-value=6.5e-23  Score=174.10  Aligned_cols=274  Identities=15%  Similarity=0.203  Sum_probs=202.4

Q ss_pred             EEEeecCCCCCceEEEeCCCCc-eEEEeeCCCCCCCceEEecceeecCCC-ccccCCCCceeEEEEECCCCceeeeec--
Q 014475            3 LLIASSSVADTGIGCWDLESGA-EQLRYKSCASPPHGLACVGQRFLASSQ-LREQPSASSGSILYWSWSKPQVEVKSL--   78 (424)
Q Consensus         3 ~~lat~~~~dg~i~vwd~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~~~~~~~g~i~vwd~~~~~~~~~~~--   78 (424)
                      .++|+|+ +-|+|-+||+.+.+ ....+.....|...|.++.  |+|... .+.+++.| |+|++-|+++........  
T Consensus       201 ~lva~Gd-K~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~--F~P~n~s~i~ssSyD-GtiR~~D~~~~i~e~v~s~~  276 (498)
T KOG4328|consen  201 KLVAVGD-KGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLK--FSPANTSQIYSSSYD-GTIRLQDFEGNISEEVLSLD  276 (498)
T ss_pred             eEEEEcc-CCCcEEEEecCCCCCccCceEEeccCCccccceE--ecCCChhheeeeccC-ceeeeeeecchhhHHHhhcC
Confidence            6899999 99999999994221 1111222233445566666  888765 45555665 999999998775442222  


Q ss_pred             -CCCCeeEEEECCCCCEEEEecCCCcEEEEEccCcce-eeeeccccCCeEEEEEcc-CCcEEEEeeCCCcEEEEeCCccc
Q 014475           79 -PAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRL-LKKWHAHYRAVTCLVFSE-DGSFLISGSEDGCVRIWSLLTVF  155 (424)
Q Consensus        79 -~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~-~~~~~~~~~~i~~~~~~~-~~~~l~s~~~dg~i~iwd~~~~~  155 (424)
                       ....+..+.|+.+...++.+..=|...+||++++.. ...+..|...|..++++| ...+|+|++.|++.+|||++...
T Consensus       277 ~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~  356 (498)
T KOG4328|consen  277 TDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLR  356 (498)
T ss_pred             ccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhc
Confidence             345677888998888888887778999999988754 666777989999999999 56789999999999999998743


Q ss_pred             chhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEec----CCCceeeeeecCc------ceeEEE
Q 014475          156 EECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSL----LKGRLLRNIVFPS------VIDAIA  225 (424)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~----~~~~~~~~~~~~~------~i~~~~  225 (424)
                      ..       ..+......|...|.+..|+|.+  ..|++.+.|..|+|||.    ..-.+...+.|+.      ......
T Consensus       357 ~K-------~sp~lst~~HrrsV~sAyFSPs~--gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~  427 (498)
T KOG4328|consen  357 GK-------ASPFLSTLPHRRSVNSAYFSPSG--GTLLTTCQDNEIRVFDSSCISAKDEPLGTIPHNNRTGRWLTPFKAA  427 (498)
T ss_pred             CC-------CCcceecccccceeeeeEEcCCC--CceEeeccCCceEEeecccccccCCccceeeccCcccccccchhhe
Confidence            21       11244456799999999999998  56999999999999998    4455666666553      234668


Q ss_pred             ECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccC-cCeEE-EEecC-CCEEEEe-CCCCcEEEEeCC
Q 014475          226 LDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHS-KAVTC-LAYST-GDLLISG-SEDGMVRVWDPI  298 (424)
Q Consensus       226 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~-~~i~~-~~~~~-~~~l~t~-~~dg~i~iwd~~  298 (424)
                      |.|+..++++|..-..|-++|-..+         +.+..+.... ..|.+ ..|+| +..+++| +..|.|.||--+
T Consensus       428 W~P~~~li~vg~~~r~IDv~~~~~~---------q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~vft~k  495 (498)
T KOG4328|consen  428 WDPDYNLIVVGRYPRPIDVFDGNGG---------QMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSSGKIYVFTNK  495 (498)
T ss_pred             eCCCccEEEEeccCcceeEEcCCCC---------EEeeeccCccccccccceeecccccceeccCCccceEEEEecC
Confidence            9999999999999999999998886         4444543333 25555 47899 6645554 567889888644

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.91  E-value=8.8e-23  Score=163.51  Aligned_cols=266  Identities=14%  Similarity=0.159  Sum_probs=202.9

Q ss_pred             ceeEEEEECCCCcee----eeecCCCCeeEEEECC-CCCEEEEecCC-------CcEEEEEccCc---------ceeeee
Q 014475           60 SGSILYWSWSKPQVE----VKSLPAEPIKPIAANS-HGTYIAGGGQS-------GDIYMWEVASG---------RLLKKW  118 (424)
Q Consensus        60 ~g~i~vwd~~~~~~~----~~~~~~~~v~~~~~s~-~~~~l~~~~~d-------g~v~iwd~~~~---------~~~~~~  118 (424)
                      ++.|.+.+++.+.-.    ....+.+.|..++-+| +.+.|+++..+       -...||.+...         +++..+
T Consensus        39 dNqVhll~~d~e~s~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~L  118 (370)
T KOG1007|consen   39 DNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASL  118 (370)
T ss_pred             cceeEEEEecCccchhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcC
Confidence            478888887755432    2345688999999999 55566665331       23789988543         333444


Q ss_pred             c-cccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeC
Q 014475          119 H-AHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASE  197 (424)
Q Consensus       119 ~-~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~  197 (424)
                      . .+-+.|.|+.|.|++..+++-. |..|.+|++.........     .....-..+....++-+|+|..+++.+++.+ 
T Consensus       119 dteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vae-----v~ss~s~e~~~~ftsg~WspHHdgnqv~tt~-  191 (370)
T KOG1007|consen  119 DTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAE-----VLSSESAEMRHSFTSGAWSPHHDGNQVATTS-  191 (370)
T ss_pred             CHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchhee-----ecccccccccceecccccCCCCccceEEEeC-
Confidence            3 4567899999999999888876 779999999774432110     1111122366778888999976657766654 


Q ss_pred             CCcEEEEecCCCceeeeee--cCcceeEEEECCCCC-EEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEE
Q 014475          198 DRTCKVWSLLKGRLLRNIV--FPSVIDAIALDPAEH-VFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTC  274 (424)
Q Consensus       198 d~~v~iwd~~~~~~~~~~~--~~~~i~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~  274 (424)
                      |+++..||+++.+....+.  |...+..+.|+|+.+ +|++++.||.|++||.+..+        .++..+.+|...|.+
T Consensus       192 d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk--------~pv~el~~HsHWvW~  263 (370)
T KOG1007|consen  192 DSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTK--------FPVQELPGHSHWVWA  263 (370)
T ss_pred             CCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCC--------ccccccCCCceEEEE
Confidence            8899999999988888877  788899999999765 57788999999999999986        788999999999999


Q ss_pred             EEecC--CCEEEEeCCCCcEEEEeCCCC-----------------------------cEEEEEeccCCCeeEEEEEecCc
Q 014475          275 LAYST--GDLLISGSEDGMVRVWDPITH-----------------------------NIVRMFRLAKGPVNNILVVRRPL  323 (424)
Q Consensus       275 ~~~~~--~~~l~t~~~dg~i~iwd~~~~-----------------------------~~~~~~~~~~~~v~~l~~s~~~~  323 (424)
                      +.|+|  ..++++|+.|..|.+|...+-                             ..+.++..|...|.+++|+.-..
T Consensus       264 VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadP  343 (370)
T KOG1007|consen  264 VRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADP  343 (370)
T ss_pred             EEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCC
Confidence            99999  889999999999999965321                             12446778999999999997555


Q ss_pred             -eeeeccCCCceeeccCC
Q 014475          324 -YLNLGSFSNPHTSSRRH  340 (424)
Q Consensus       324 -~l~~~~~d~~i~iw~~~  340 (424)
                       .+|+-++||.+.|=+++
T Consensus       344 WiFASLSYDGRviIs~V~  361 (370)
T KOG1007|consen  344 WIFASLSYDGRVIISSVP  361 (370)
T ss_pred             eeEEEeccCceEEeecCC
Confidence             55888999999987765

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.91  E-value=8.2e-23  Score=166.51  Aligned_cols=288  Identities=17%  Similarity=0.242  Sum_probs=210.2

Q ss_pred             CCCCceEEecceeec-----CCCccccCCCCceeEEEEECCCCc--eeee----ecCCCCeeEEEECCC----CCEEEEe
Q 014475           34 SPPHGLACVGQRFLA-----SSQLREQPSASSGSILYWSWSKPQ--VEVK----SLPAEPIKPIAANSH----GTYIAGG   98 (424)
Q Consensus        34 ~~~~~v~~~~~~~~~-----~~~~l~~~~~~~g~i~vwd~~~~~--~~~~----~~~~~~v~~~~~s~~----~~~l~~~   98 (424)
                      .|...+..++  |.+     .-+.++++|.  ..+.+|......  ..+.    ..+.+....++|+-+    ..++|+|
T Consensus        36 d~~~~I~gv~--fN~~~~~~e~~vfatvG~--~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~  111 (385)
T KOG1034|consen   36 DHNKPIFGVA--FNSFLGCDEPQVFATVGG--NRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAG  111 (385)
T ss_pred             cCCCccceee--eehhcCCCCCceEEEeCC--cEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEee
Confidence            3445566665  542     3345666666  689999876543  2221    125677888888653    4588999


Q ss_pred             cCCCcEEEEEccCcceeeeeccccCCeEEEEEcc-CCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEe---ecCC
Q 014475           99 GQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSE-DGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHS---FTGH  174 (424)
Q Consensus        99 ~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~---~~~~  174 (424)
                      +.-|.|+|.|+.++++...+.+|...|+.+.++| +.++++++|.|..|++|++++           ..++..   ..+|
T Consensus       112 G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~-----------~~Cv~VfGG~egH  180 (385)
T KOG1034|consen  112 GYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQT-----------DVCVAVFGGVEGH  180 (385)
T ss_pred             cceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccC-----------CeEEEEecccccc
Confidence            9999999999999999999999999999999999 557899999999999999965           334443   4679


Q ss_pred             cCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeee-----------------------------cCcceeEEE
Q 014475          175 TLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-----------------------------FPSVIDAIA  225 (424)
Q Consensus       175 ~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~-----------------------------~~~~i~~~~  225 (424)
                      ...|.++.|+.++  .++++++.|.++++|++...+....+.                             |...|.|+.
T Consensus       181 rdeVLSvD~~~~g--d~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvr  258 (385)
T KOG1034|consen  181 RDEVLSVDFSLDG--DRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVR  258 (385)
T ss_pred             cCcEEEEEEcCCC--CeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHH
Confidence            9999999999999  799999999999999997433221111                             222233333


Q ss_pred             ECCCCCEEEEEeCCCcEEEEEcCC-CCC----CCCCcCceeeeeecccCcCeEEEEe--cC-CCEEEEeCCCCcEEEEeC
Q 014475          226 LDPAEHVFYAGSRDGSIYIAALNA-ESP----STSSYGMHIIGSLSDHSKAVTCLAY--ST-GDLLISGSEDGMVRVWDP  297 (424)
Q Consensus       226 ~~~~~~~l~~~~~dg~i~i~d~~~-~~~----~~~~~~~~~~~~~~~~~~~i~~~~~--~~-~~~l~t~~~dg~i~iwd~  297 (424)
                      |  -|+++++-+-++.|..|.... ++.    .........+..+.-....|.-+.|  .| ++.||.|...|.|.+||+
T Consensus       259 w--~gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL  336 (385)
T KOG1034|consen  259 W--FGDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDL  336 (385)
T ss_pred             H--HhhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEEC
Confidence            3  257888888899999998832 211    0111122334455555566666654  56 899999999999999999


Q ss_pred             CCCcEEE--EEec--cCCCeeEEEEEecCceeeeccCCCceeeccCC
Q 014475          298 ITHNIVR--MFRL--AKGPVNNILVVRRPLYLNLGSFSNPHTSSRRH  340 (424)
Q Consensus       298 ~~~~~~~--~~~~--~~~~v~~l~~s~~~~~l~~~~~d~~i~iw~~~  340 (424)
                      +..++..  ++..  ....|...+|+.|+..|+...+|++|.-||.-
T Consensus       337 ~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv  383 (385)
T KOG1034|consen  337 DNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV  383 (385)
T ss_pred             CCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence            9876632  2222  23489999999999999999999999999864

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.90  E-value=6.6e-22  Score=180.61  Aligned_cols=273  Identities=16%  Similarity=0.184  Sum_probs=206.0

Q ss_pred             eeEEEEECCCC-ceeeeecCCCCeeEEEECC-CCCEEEEecCCCcEEEEEccCcce--eeee----ccccCCeEEEEEcc
Q 014475           61 GSILYWSWSKP-QVEVKSLPAEPIKPIAANS-HGTYIAGGGQSGDIYMWEVASGRL--LKKW----HAHYRAVTCLVFSE  132 (424)
Q Consensus        61 g~i~vwd~~~~-~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~v~iwd~~~~~~--~~~~----~~~~~~i~~~~~~~  132 (424)
                      +.+.+|++..+ ..........+|.|+.|+| +..+++.|..+|+|.+||++.+..  ...+    ..|..+++.+.|..
T Consensus       222 ~~~~vW~~~~p~~Pe~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~  301 (555)
T KOG1587|consen  222 GVLLVWSLKNPNTPELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQ  301 (555)
T ss_pred             ceEEEEecCCCCCceEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEec
Confidence            58999999887 4445566788999999999 678889999999999999987755  2222    45889999999976


Q ss_pred             CC--cEEEEeeCCCcEEEEeCCcccchhcccccccce-EEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEec---
Q 014475          133 DG--SFLISGSEDGCVRIWSLLTVFEECESQRASHLY-LHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSL---  206 (424)
Q Consensus       133 ~~--~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~---  206 (424)
                      +.  .-+++++.||.|+.|+++....+.+........ ...-......++++.|.+... ..++.|+++|.|.--+-   
T Consensus       302 ~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p-~~FiVGTe~G~v~~~~r~g~  380 (555)
T KOG1587|consen  302 NEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDP-NHFIVGTEEGKVYKGCRKGY  380 (555)
T ss_pred             cCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCC-ceEEEEcCCcEEEEEeccCC
Confidence            44  349999999999999987654432222111111 011112345788899988765 78999999999887332   


Q ss_pred             CCCc-----ee-eeeecCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-
Q 014475          207 LKGR-----LL-RNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-  279 (424)
Q Consensus       207 ~~~~-----~~-~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-  279 (424)
                      +...     .+ ....|.++|.++.++|-+..++..+.|.+++||......        .++..+..+...+++++||| 
T Consensus       381 ~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~--------~Pl~~~~~~~~~v~~vaWSpt  452 (555)
T KOG1587|consen  381 TPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIA--------SPLLSLDSSPDYVTDVAWSPT  452 (555)
T ss_pred             cccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCC--------CcchhhhhccceeeeeEEcCc
Confidence            2222     11 222378999999999976655555559999999988432        55667777888899999999 


Q ss_pred             -CCEEEEeCCCCcEEEEeCCCC--cEEEEEeccCCCeeEEEEEecCceeeeccCCCceeeccCCCC
Q 014475          280 -GDLLISGSEDGMVRVWDPITH--NIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGS  342 (424)
Q Consensus       280 -~~~l~t~~~dg~i~iwd~~~~--~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~d~~i~iw~~~~~  342 (424)
                       ...|+++..||.|.+||+...  .++.+.+.+....+.+.|+++|+.|++|...|.+.++++...
T Consensus       453 rpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~~  518 (555)
T KOG1587|consen  453 RPAVFATVDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLSES  518 (555)
T ss_pred             CceEEEEEcCCCceehhhhhccccCCcccccccccccceeecCCCCcEEEEecCCCcEEEEEcCch
Confidence             679999999999999998753  556666666667788899999999999999999999998633

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.90  E-value=3.5e-22  Score=162.88  Aligned_cols=281  Identities=15%  Similarity=0.181  Sum_probs=201.8

Q ss_pred             EEEeecCCCCCceEEEeCCCCc---eEEEeeCCCCCCCceEEecceeecC----CCccccCCCCceeEEEEECCCCceee
Q 014475            3 LLIASSSVADTGIGCWDLESGA---EQLRYKSCASPPHGLACVGQRFLAS----SQLREQPSASSGSILYWSWSKPQVEV   75 (424)
Q Consensus         3 ~~lat~~~~dg~i~vwd~~~~~---~~~~~~~~~~~~~~v~~~~~~~~~~----~~~l~~~~~~~g~i~vwd~~~~~~~~   75 (424)
                      ..+||.+  ...+.+++.....   .++.+... .+......++  |.-+    ..++|++|.- |.|+|.|+.+++..-
T Consensus        56 ~vfatvG--~~rvtiy~c~~d~~ir~lq~y~D~-d~~Esfytcs--w~yd~~~~~p~la~~G~~-GvIrVid~~~~~~~~  129 (385)
T KOG1034|consen   56 QVFATVG--GNRVTIYECPGDGGIRLLQSYADE-DHDESFYTCS--WSYDSNTGNPFLAAGGYL-GVIRVIDVVSGQCSK  129 (385)
T ss_pred             ceEEEeC--CcEEEEEEECCccceeeeeeccCC-CCCcceEEEE--EEecCCCCCeeEEeecce-eEEEEEecchhhhcc
Confidence            4567777  4678899876543   33333222 3455566666  5543    4578888877 999999999888764


Q ss_pred             -eecCCCCeeEEEECCC-CCEEEEecCCCcEEEEEccCcceeeee---ccccCCeEEEEEccCCcEEEEeeCCCcEEEEe
Q 014475           76 -KSLPAEPIKPIAANSH-GTYIAGGGQSGDIYMWEVASGRLLKKW---HAHYRAVTCLVFSEDGSFLISGSEDGCVRIWS  150 (424)
Q Consensus        76 -~~~~~~~v~~~~~s~~-~~~l~~~~~dg~v~iwd~~~~~~~~~~---~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd  150 (424)
                       ...|+..|+.+.|.|+ .+++++++.|..|++|++++..++..+   .+|.+.|.++.|++++.++++++.|..+++|+
T Consensus       130 ~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~  209 (385)
T KOG1034|consen  130 NYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWR  209 (385)
T ss_pred             ceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEe
Confidence             4579999999999995 578999999999999999999998887   67999999999999999999999999999999


Q ss_pred             CCcccchhcccc--------------cccc--eE-EeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecC-CCcee
Q 014475          151 LLTVFEECESQR--------------ASHL--YL-HSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLL-KGRLL  212 (424)
Q Consensus       151 ~~~~~~~~~~~~--------------~~~~--~~-~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~-~~~~~  212 (424)
                      +....-....+.              ....  +. .+-.-|...|.|+.|--    +++++=+.++.|..|... -.+.+
T Consensus       210 l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~g----d~ilSkscenaI~~w~pgkl~e~~  285 (385)
T KOG1034|consen  210 LNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWFG----DFILSKSCENAIVCWKPGKLEESI  285 (385)
T ss_pred             cChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHHh----hheeecccCceEEEEecchhhhhh
Confidence            974221111000              0000  11 12345777888887753    688888889999999872 11211


Q ss_pred             -------------eeee-cCccee--EEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEE
Q 014475          213 -------------RNIV-FPSVID--AIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLA  276 (424)
Q Consensus       213 -------------~~~~-~~~~i~--~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  276 (424)
                                   ..+. ....|.  ..+|+|-++.|+.|...|.+++||++...+..     ............|...+
T Consensus       286 ~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~-----~ttl~~s~~~~tVRQ~s  360 (385)
T KOG1034|consen  286 HNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPK-----CTTLTHSKSGSTVRQTS  360 (385)
T ss_pred             hccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCcc-----CceEEeccccceeeeee
Confidence                         1111 112233  34567788999999999999999999876431     11111122346789999


Q ss_pred             ecC-CCEEEEeCCCCcEEEEeCC
Q 014475          277 YST-GDLLISGSEDGMVRVWDPI  298 (424)
Q Consensus       277 ~~~-~~~l~t~~~dg~i~iwd~~  298 (424)
                      |+. +.+|+...+|++|.-||..
T Consensus       361 fS~dgs~lv~vcdd~~Vwrwdrv  383 (385)
T KOG1034|consen  361 FSRDGSILVLVCDDGTVWRWDRV  383 (385)
T ss_pred             ecccCcEEEEEeCCCcEEEEEee
Confidence            999 9999999999999999854

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.90  E-value=1.2e-19  Score=168.79  Aligned_cols=315  Identities=26%  Similarity=0.446  Sum_probs=239.3

Q ss_pred             EEeecCCCCCceEEEeCCCCc-eEEEeeCCCCCCCceEEeccee-ecCCC-ccccCCCCceeEEEEECCC--Cceeeeec
Q 014475            4 LIASSSVADTGIGCWDLESGA-EQLRYKSCASPPHGLACVGQRF-LASSQ-LREQPSASSGSILYWSWSK--PQVEVKSL   78 (424)
Q Consensus         4 ~lat~~~~dg~i~vwd~~~~~-~~~~~~~~~~~~~~v~~~~~~~-~~~~~-~l~~~~~~~g~i~vwd~~~--~~~~~~~~   78 (424)
                      .++.++ .|+.+.+|+...+. ....+.....  ..+..+.  + .+++. .++..+..++.+.+|+...  ........
T Consensus        79 ~~~~~~-~d~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~--~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~  153 (466)
T COG2319          79 LLLSGS-SDGTIKLWDLDNGEKLIKSLEGLHD--SSVSKLA--LSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEG  153 (466)
T ss_pred             EEEEec-CCCcEEEEEcCCCceeEEEEeccCC--CceeeEE--EECCCcceEEeccCCCCccEEEEEecCCCeEEEEEec
Confidence            456666 79999999999887 6666655332  3455555  4 67777 5555455349999999987  44455677


Q ss_pred             CCCCeeEEEECCCCCEEEEecC-CCcEEEEEccCcceeeeeccccCCeEEEEEccCCc-EEEEeeCCCcEEEEeCCcccc
Q 014475           79 PAEPIKPIAANSHGTYIAGGGQ-SGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGS-FLISGSEDGCVRIWSLLTVFE  156 (424)
Q Consensus        79 ~~~~v~~~~~s~~~~~l~~~~~-dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~  156 (424)
                      |...|..++|+|++..+++++. ++.+++|+...+..+..+.+|...|.++.|+|++. .+++++.|+.+++||...   
T Consensus       154 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~---  230 (466)
T COG2319         154 HSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLST---  230 (466)
T ss_pred             CcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCC---
Confidence            8999999999999999998885 99999999999888899999999999999999987 555559999999998742   


Q ss_pred             hhcccccccceEE-eecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCce-eeee-ecCcceeEEEECCCCCEE
Q 014475          157 ECESQRASHLYLH-SFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRL-LRNI-VFPSVIDAIALDPAEHVF  233 (424)
Q Consensus       157 ~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~-~~~~-~~~~~i~~~~~~~~~~~l  233 (424)
                              ..... .+..|.... ...|++++  ..+++++.|+.+++||.+.... ...+ .+...+.++.+.|++..+
T Consensus       231 --------~~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  299 (466)
T COG2319         231 --------GKLLRSTLSGHSDSV-VSSFSPDG--SLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLL  299 (466)
T ss_pred             --------CcEEeeecCCCCcce-eEeECCCC--CEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCCEE
Confidence                    22333 567777765 33788887  7888999999999999986664 3333 367899999999988888


Q ss_pred             EEEeCCCcEEEEEcCCCCCCCCCcCceeeeee--cccCcCeEEEEecCC-CEEEEe-CCCCcEEEEeCCCCcEEEEEecc
Q 014475          234 YAGSRDGSIYIAALNAESPSTSSYGMHIIGSL--SDHSKAVTCLAYSTG-DLLISG-SEDGMVRVWDPITHNIVRMFRLA  309 (424)
Q Consensus       234 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~--~~~~~~i~~~~~~~~-~~l~t~-~~dg~i~iwd~~~~~~~~~~~~~  309 (424)
                      ++++.|+.+.+|+.....         .....  ..|...+..+.+.+. ..++.+ ..|+.+.+|+.............
T Consensus       300 ~~~~~d~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~  370 (466)
T COG2319         300 ASGSSDGTVRLWDLETGK---------LLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGH  370 (466)
T ss_pred             EEeeCCCcEEEEEcCCCc---------eEEEeeecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCceeEEecCC
Confidence            889888889999887763         22222  467778999999323 566666 68899999999988733333322


Q ss_pred             CCCeeEEEEEecCceeee-ccCCCceeeccCCCCCCCCCc
Q 014475          310 KGPVNNILVVRRPLYLNL-GSFSNPHTSSRRHGSQLPPPL  348 (424)
Q Consensus       310 ~~~v~~l~~s~~~~~l~~-~~~d~~i~iw~~~~~~~~~~~  348 (424)
                       ..+..+.+.+ ...... +..++.+.+|+..........
T Consensus       371 -~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  408 (466)
T COG2319         371 -SNVLSVSFSP-DGRVVSSGSTDGTVRLWDLSTGSLLRNL  408 (466)
T ss_pred             -ceEEEEEECC-CCCEEEEecCCCceEEEecccCeeeeec
Confidence             2388999988 544444 689999999999877654443

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.90  E-value=9.1e-23  Score=177.67  Aligned_cols=261  Identities=16%  Similarity=0.204  Sum_probs=191.8

Q ss_pred             cCCCCeeEEEECCCCCEEEEecCCCcEEEEEccC--------cceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEE
Q 014475           78 LPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVAS--------GRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIW  149 (424)
Q Consensus        78 ~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~--------~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iw  149 (424)
                      .|.+.|+.+.|.|....|++++.||.+.+|+++.        -+.+.++++|.++|.|++..++++++.+|+-||+|+.|
T Consensus       292 s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w  371 (577)
T KOG0642|consen  292 SHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCW  371 (577)
T ss_pred             cchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCceeeee
Confidence            4678899999999999999999999999999932        15678899999999999999999999999999999999


Q ss_pred             eCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeee---cCcceeEEEE
Q 014475          150 SLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV---FPSVIDAIAL  226 (424)
Q Consensus       150 d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~---~~~~i~~~~~  226 (424)
                      ++........ ..........+.+|...++.++++...  ..|++++.||++++|+.....+ ..+.   ..+....+.+
T Consensus       372 ~~p~n~dp~d-s~dp~vl~~~l~Ghtdavw~l~~s~~~--~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Plsvd~  447 (577)
T KOG0642|consen  372 NLPPNQDPDD-SYDPSVLSGTLLGHTDAVWLLALSSTK--DRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPLSVDR  447 (577)
T ss_pred             ccCCCCCccc-ccCcchhccceeccccceeeeeecccc--cceeeecCCceEEeeccCCcCc-cccCCccccCCcceEee
Confidence            8752111111 112223456788999999999999988  7899999999999999876665 3332   2233445555


Q ss_pred             CCCC-CEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCCCcEEE
Q 014475          227 DPAE-HVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVR  304 (424)
Q Consensus       227 ~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~~~  304 (424)
                      -... ...++...-+.-.++++..........  ........-...+..+.++| ..+.+++..|+.|+++|..+++++.
T Consensus       448 ~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~--s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~  525 (577)
T KOG0642|consen  448 TSSRPAHSLASFRFGYTSIDDMEVVSDLLIFE--SSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILH  525 (577)
T ss_pred             ccchhHhhhhhcccccccchhhhhhhheeecc--ccCCCcccccCccceEEecCCCCeeEecccCCceecccccccccch
Confidence            4332 222222222222333333321100000  00000011124577788889 8999999999999999999999999


Q ss_pred             EEeccCCCeeEEEEEecCceeeeccCCCceeeccCCCCCC
Q 014475          305 MFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGSQL  344 (424)
Q Consensus       305 ~~~~~~~~v~~l~~s~~~~~l~~~~~d~~i~iw~~~~~~~  344 (424)
                      ....|...++++++.|+|.+|++++.|+.+++|++....+
T Consensus       526 s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~  565 (577)
T KOG0642|consen  526 SMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTC  565 (577)
T ss_pred             heeeccceecceeecCCCceEEeecCCceeehhhccchhe
Confidence            9999999999999999999999999999999999875543

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.90  E-value=8.8e-22  Score=174.81  Aligned_cols=270  Identities=16%  Similarity=0.182  Sum_probs=215.3

Q ss_pred             ceEEecceeecCCCccccCCCCceeEEEEECCCCcee-eeecCCCCeeEEEECCCCCEEEEecCCCcEEEEEccCcceee
Q 014475           38 GLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVE-VKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLK  116 (424)
Q Consensus        38 ~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~  116 (424)
                      .|.-++  |-|||..|+.+..  ..+.+||...+... ....|.+.|+|++|+.||+.+|+|+.|..|.+|..+-.. +.
T Consensus        14 ci~d~a--fkPDGsqL~lAAg--~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG-~L   88 (1081)
T KOG1538|consen   14 CINDIA--FKPDGTQLILAAG--SRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEG-IL   88 (1081)
T ss_pred             chheeE--ECCCCceEEEecC--CEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEecccccc-ee
Confidence            567777  9999999888876  58999999877654 557899999999999999999999999999999854322 22


Q ss_pred             eeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCC--cCceeEEEEEEcCceeEEEE
Q 014475          117 KWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGH--TLRITDIVIGYGGVSATIVS  194 (424)
Q Consensus       117 ~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~~~~~~~~~~~~~l~~  194 (424)
                      .+ .|.+.|.|+.|+|-...|++++-. ..-+|.....               ....|  ...+.+.+|..+|  .+++.
T Consensus        89 kY-SH~D~IQCMsFNP~~h~LasCsLs-dFglWS~~qK---------------~V~K~kss~R~~~CsWtnDG--qylal  149 (1081)
T KOG1538|consen   89 KY-SHNDAIQCMSFNPITHQLASCSLS-DFGLWSPEQK---------------SVSKHKSSSRIICCSWTNDG--QYLAL  149 (1081)
T ss_pred             ee-ccCCeeeEeecCchHHHhhhcchh-hccccChhhh---------------hHHhhhhheeEEEeeecCCC--cEEEE
Confidence            22 499999999999998999999875 5778987431               11223  3456667777777  99999


Q ss_pred             EeCCCcEEEEecCCCceeeeee----cCcceeEEEECCCC-----CEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeee
Q 014475          195 ASEDRTCKVWSLLKGRLLRNIV----FPSVIDAIALDPAE-----HVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSL  265 (424)
Q Consensus       195 ~~~d~~v~iwd~~~~~~~~~~~----~~~~i~~~~~~~~~-----~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~  265 (424)
                      |-.+|+|.+-+- +++....+.    ...+|.+++|+|..     ..+++.....++.+|.+...          .+..-
T Consensus       150 G~~nGTIsiRNk-~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~----------~Igk~  218 (1081)
T KOG1538|consen  150 GMFNGTISIRNK-NGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGK----------QIGKD  218 (1081)
T ss_pred             eccCceEEeecC-CCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecce----------eeccc
Confidence            999999999874 455555554    45789999999953     56888888888888888763          33333


Q ss_pred             cccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCCCcEEEEEeccCCCeeEEEEEecCceeeeccCCCceeeccCCCCC
Q 014475          266 SDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGSQ  343 (424)
Q Consensus       266 ~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~d~~i~iw~~~~~~  343 (424)
                      +.-.-...|+.+.+ |.+++.|+.|+.+.+|. +.|-.+.++-.....|+.++..|++++.+.|..||+|-.+++-...
T Consensus       219 r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fT-R~GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~fST  296 (1081)
T KOG1538|consen  219 RALNFDPCCISYFTNGEYILLGGSDKQLSLFT-RDGVRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYNLIFST  296 (1081)
T ss_pred             ccCCCCchhheeccCCcEEEEccCCCceEEEe-ecCeEEeeccccceeEEEEEEccCCceEEEEEccCeeehhhhHHhH
Confidence            33444567888888 99999999999999997 6788888888788899999999999999999999999999876443

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.89  E-value=1.2e-21  Score=173.98  Aligned_cols=263  Identities=16%  Similarity=0.244  Sum_probs=211.2

Q ss_pred             eEEEeecCCCCCceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCceeeeecCCC
Q 014475            2 ELLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSLPAE   81 (424)
Q Consensus         2 e~~lat~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~~~~~~   81 (424)
                      |++||+++    .+.|||...|..+.++++|.   +.|.|++  |+.+|+++|+|+.| +.|.+|+-.- +-..+..|.+
T Consensus        26 qL~lAAg~----rlliyD~ndG~llqtLKgHK---DtVycVA--ys~dGkrFASG~aD-K~VI~W~~kl-EG~LkYSH~D   94 (1081)
T KOG1538|consen   26 QLILAAGS----RLLVYDTSDGTLLQPLKGHK---DTVYCVA--YAKDGKRFASGSAD-KSVIIWTSKL-EGILKYSHND   94 (1081)
T ss_pred             eEEEecCC----EEEEEeCCCccccccccccc---ceEEEEE--EccCCceeccCCCc-eeEEEecccc-cceeeeccCC
Confidence            35555555    89999999999999988754   7899999  99999999999998 9999998543 3456788999


Q ss_pred             CeeEEEECCCCCEEEEecCCCcEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhccc
Q 014475           82 PIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQ  161 (424)
Q Consensus        82 ~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~  161 (424)
                      .|.|+.|+|-...|++++-+ ..-+|..+.....+ . .....+.+++|..||++++.|-.+|+|.+-+-..        
T Consensus        95 ~IQCMsFNP~~h~LasCsLs-dFglWS~~qK~V~K-~-kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~g--------  163 (1081)
T KOG1538|consen   95 AIQCMSFNPITHQLASCSLS-DFGLWSPEQKSVSK-H-KSSSRIICCSWTNDGQYLALGMFNGTISIRNKNG--------  163 (1081)
T ss_pred             eeeEeecCchHHHhhhcchh-hccccChhhhhHHh-h-hhheeEEEeeecCCCcEEEEeccCceEEeecCCC--------
Confidence            99999999999999998764 57788865443322 1 1345688999999999999999999999986532        


Q ss_pred             ccccceEEeecCCcCceeEEEEEEcC---ceeEEEEEeCCCcEEEEecCCCceee-eeecCcceeEEEECCCCCEEEEEe
Q 014475          162 RASHLYLHSFTGHTLRITDIVIGYGG---VSATIVSASEDRTCKVWSLLKGRLLR-NIVFPSVIDAIALDPAEHVFYAGS  237 (424)
Q Consensus       162 ~~~~~~~~~~~~~~~~i~~~~~~~~~---~~~~l~~~~~d~~v~iwd~~~~~~~~-~~~~~~~i~~~~~~~~~~~l~~~~  237 (424)
                       .....+..-.+.+.+|.+++|+|..   ....+++.....++.++.+. |+.+. .-...-...|+.+.|+|.+++.|+
T Consensus       164 -Eek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~Ls-G~~Igk~r~L~FdP~CisYf~NGEy~LiGG  241 (1081)
T KOG1538|consen  164 -EEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLS-GKQIGKDRALNFDPCCISYFTNGEYILLGG  241 (1081)
T ss_pred             -CcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEec-ceeecccccCCCCchhheeccCCcEEEEcc
Confidence             2233344456688999999999863   23678888889999999885 44443 334566678999999999999999


Q ss_pred             CCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCC
Q 014475          238 RDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPI  298 (424)
Q Consensus       238 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~  298 (424)
                      .|+.+.+|..+.          -.+.++.....+|..++..| +++++.|+.||+|..|++.
T Consensus       242 sdk~L~~fTR~G----------vrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~  293 (1081)
T KOG1538|consen  242 SDKQLSLFTRDG----------VRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYNLI  293 (1081)
T ss_pred             CCCceEEEeecC----------eEEeeccccceeEEEEEEccCCceEEEEEccCeeehhhhH
Confidence            999999998766          44666666788999999999 9999999999999999864

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.89  E-value=2.7e-22  Score=164.38  Aligned_cols=231  Identities=15%  Similarity=0.235  Sum_probs=175.7

Q ss_pred             CEEEEecCCCcEEEEEccCcceeeeeccccCCeEEEEEcc--CCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEe
Q 014475           93 TYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSE--DGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHS  170 (424)
Q Consensus        93 ~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  170 (424)
                      ..+|++...|.|++||..+++.+..++++...++.+.|..  ....+.+|+.||+|++||++..         .......
T Consensus        41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~---------~e~a~~~  111 (376)
T KOG1188|consen   41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQ---------AESARIS  111 (376)
T ss_pred             eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecc---------hhhhhee
Confidence            5688888999999999999999999999999999999976  4667999999999999999872         3333444


Q ss_pred             ecCCc-CceeEEEEEEcCceeEEEEEeC----CCcEEEEecCCCce-eeeee--cCcceeEEEECC-CCCEEEEEeCCCc
Q 014475          171 FTGHT-LRITDIVIGYGGVSATIVSASE----DRTCKVWSLLKGRL-LRNIV--FPSVIDAIALDP-AEHVFYAGSRDGS  241 (424)
Q Consensus       171 ~~~~~-~~i~~~~~~~~~~~~~l~~~~~----d~~v~iwd~~~~~~-~~~~~--~~~~i~~~~~~~-~~~~l~~~~~dg~  241 (424)
                      +..+. .+..+++....+  +.+++|++    +-.|.+||+|..+. +..+.  |...|++++|+| +.++|++|+.||.
T Consensus       112 ~~~~~~~~f~~ld~nck~--~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGL  189 (376)
T KOG1188|consen  112 WTQQSGTPFICLDLNCKK--NIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGL  189 (376)
T ss_pred             ccCCCCCcceEeeccCcC--CeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccce
Confidence            55555 344555554344  67777764    66799999998776 55554  889999999999 6789999999999


Q ss_pred             EEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC--CCEEEEeCCCCcEEEEeCCCCcEEEEE-------------
Q 014475          242 IYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST--GDLLISGSEDGMVRVWDPITHNIVRMF-------------  306 (424)
Q Consensus       242 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~l~t~~~dg~i~iwd~~~~~~~~~~-------------  306 (424)
                      +.+||+......      ..+.....|...|.++.|..  -+.|.+-+...+..+|+++.+.+...+             
T Consensus       190 vnlfD~~~d~Ee------DaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~  263 (376)
T KOG1188|consen  190 VNLFDTKKDNEE------DALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKE  263 (376)
T ss_pred             EEeeecCCCcch------hhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhh
Confidence            999999775321      22334445777788888876  346777777888888887654322111             


Q ss_pred             ------------------------------------------------e-ccCCCeeEEEEEecCceeeeccCCCceeec
Q 014475          307 ------------------------------------------------R-LAKGPVNNILVVRRPLYLNLGSFSNPHTSS  337 (424)
Q Consensus       307 ------------------------------------------------~-~~~~~v~~l~~s~~~~~l~~~~~d~~i~iw  337 (424)
                                                                      . +|..-|+++.|...+.++.+|+.||.+.+|
T Consensus       264 ~~~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~W  343 (376)
T KOG1188|consen  264 DNCDYVINEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAW  343 (376)
T ss_pred             hhhhheeecccCCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccCCCceEEEE
Confidence                                                            1 244467778888888899999999999999


Q ss_pred             cCC
Q 014475          338 RRH  340 (424)
Q Consensus       338 ~~~  340 (424)
                      ..+
T Consensus       344 k~~  346 (376)
T KOG1188|consen  344 KVE  346 (376)
T ss_pred             ecC
Confidence            963

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.89  E-value=1.7e-22  Score=189.82  Aligned_cols=268  Identities=15%  Similarity=0.273  Sum_probs=200.1

Q ss_pred             CCCceEEEeCCCCceEE--EeeCCCCCCCceEEecceeecCCCc---cccCCCCceeEEEEECCCC---c----eeeeec
Q 014475           11 ADTGIGCWDLESGAEQL--RYKSCASPPHGLACVGQRFLASSQL---REQPSASSGSILYWSWSKP---Q----VEVKSL   78 (424)
Q Consensus        11 ~dg~i~vwd~~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~---l~~~~~~~g~i~vwd~~~~---~----~~~~~~   78 (424)
                      .+.++.||.+.-.....  ...+......+...++  |.+.|..   +++||.+||.|.+||...-   .    +.....
T Consensus        37 t~~slEifeld~~~~~~dlk~~~s~~s~~rF~kL~--W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~  114 (1049)
T KOG0307|consen   37 TSASLEIFELDFSDESSDLKPVGSLQSSNRFNKLA--WGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSK  114 (1049)
T ss_pred             cccccceeeecccCccccccccccccccccceeee--ecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcc
Confidence            45666666654322221  1112222345566777  8888887   4666666699999998752   1    123456


Q ss_pred             CCCCeeEEEECCC-CCEEEEecCCCcEEEEEccCcceeeee--ccccCCeEEEEEccC-CcEEEEeeCCCcEEEEeCCcc
Q 014475           79 PAEPIKPIAANSH-GTYIAGGGQSGDIYMWEVASGRLLKKW--HAHYRAVTCLVFSED-GSFLISGSEDGCVRIWSLLTV  154 (424)
Q Consensus        79 ~~~~v~~~~~s~~-~~~l~~~~~dg~v~iwd~~~~~~~~~~--~~~~~~i~~~~~~~~-~~~l~s~~~dg~i~iwd~~~~  154 (424)
                      |.++|..+.|++. +++||+|+.||.|.|||+.+-+.-..+  ....+.|.+++|+.. ...|++++.+|++.|||++. 
T Consensus       115 h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~-  193 (1049)
T KOG0307|consen  115 HTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRK-  193 (1049)
T ss_pred             cCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccC-
Confidence            8999999999996 559999999999999999876555444  224678999999874 45688899999999999965 


Q ss_pred             cchhcccccccceEEeecCCc--CceeEEEEEEcCceeEEEEEeCCC---cEEEEecCCC-ceeeeee-cCcceeEEEEC
Q 014475          155 FEECESQRASHLYLHSFTGHT--LRITDIVIGYGGVSATIVSASEDR---TCKVWSLLKG-RLLRNIV-FPSVIDAIALD  227 (424)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~~~l~~~~~d~---~v~iwd~~~~-~~~~~~~-~~~~i~~~~~~  227 (424)
                                ...+..+..+.  ..+..+.|+|+.. ..+++++.|.   .|.+||+|.. .+++.+. |...|.++.|+
T Consensus       194 ----------~~pii~ls~~~~~~~~S~l~WhP~~a-Tql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc  262 (1049)
T KOG0307|consen  194 ----------KKPIIKLSDTPGRMHCSVLAWHPDHA-TQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWC  262 (1049)
T ss_pred             ----------CCcccccccCCCccceeeeeeCCCCc-eeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccC
Confidence                      22333333333  4577899999987 5566666554   5999999854 4555554 89999999999


Q ss_pred             CCC-CEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC--CCEEEEeCCCCcEEEEeCCCCc
Q 014475          228 PAE-HVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST--GDLLISGSEDGMVRVWDPITHN  301 (424)
Q Consensus       228 ~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~l~t~~~dg~i~iwd~~~~~  301 (424)
                      +.+ .++++++.|++|.+|+.+++         +.+..+.....++..+.|+|  ...+++++.||.|.|+.+....
T Consensus       263 ~~D~~lllSsgkD~~ii~wN~~tg---------Evl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~  330 (1049)
T KOG0307|consen  263 PQDPRLLLSSGKDNRIICWNPNTG---------EVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD  330 (1049)
T ss_pred             CCCchhhhcccCCCCeeEecCCCc---------eEeeecCCCCcceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence            955 88999999999999999997         67778888889999999999  5589999999999999987653

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.88  E-value=3.3e-19  Score=165.95  Aligned_cols=286  Identities=28%  Similarity=0.499  Sum_probs=226.3

Q ss_pred             CCCCceEEecceeecCCCccccCCCCceeEEEEECCCCc--eeeeecCC-CCeeEEEE-CCCCC-EEEEecC-CCcEEEE
Q 014475           34 SPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQ--VEVKSLPA-EPIKPIAA-NSHGT-YIAGGGQ-SGDIYMW  107 (424)
Q Consensus        34 ~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~--~~~~~~~~-~~v~~~~~-s~~~~-~l~~~~~-dg~v~iw  107 (424)
                      .+...+..+.  +.+.+..++.++.+ +.+.+|+.....  ........ ..+..+.+ ++++. .++..+. |+.+.+|
T Consensus        63 ~~~~~i~~~~--~~~~~~~~~~~~~d-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~  139 (466)
T COG2319          63 GHEDSITSIA--FSPDGELLLSGSSD-GTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLW  139 (466)
T ss_pred             eccceEEEEE--ECCCCcEEEEecCC-CcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEE
Confidence            4556677777  99999999998876 999999998875  22222222 37777777 88887 5555444 8999999


Q ss_pred             EccC-cceeeeeccccCCeEEEEEccCCcEEEEeeC-CCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEE
Q 014475          108 EVAS-GRLLKKWHAHYRAVTCLVFSEDGSFLISGSE-DGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGY  185 (424)
Q Consensus       108 d~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  185 (424)
                      +... ......+..|...|..++|+|+++.+++++. |+.+++|++..           ...+..+.+|...+.+++++|
T Consensus       140 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~v~~~~~~~  208 (466)
T COG2319         140 DLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRT-----------GKPLSTLAGHTDPVSSLAFSP  208 (466)
T ss_pred             EecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCC-----------CceEEeeccCCCceEEEEEcC
Confidence            9988 7788888999999999999999998888886 99999999954           345666777999999999997


Q ss_pred             cCceeEEEEEeCCCcEEEEecCCCceee-eee-cCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeee
Q 014475          186 GGVSATIVSASEDRTCKVWSLLKGRLLR-NIV-FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIG  263 (424)
Q Consensus       186 ~~~~~~l~~~~~d~~v~iwd~~~~~~~~-~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~  263 (424)
                      ++. ..+++++.|+.+++||...+.... .+. +.... ...|+|++..+++++.|+.+++|+.+....        ...
T Consensus       209 ~~~-~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~--------~~~  278 (466)
T COG2319         209 DGG-LLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSS--------LLR  278 (466)
T ss_pred             Ccc-eEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCc--------EEE
Confidence            762 255555999999999988777776 344 44443 338999998899999999999999998652        223


Q ss_pred             eecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCCCcEEEEEe--ccCCCeeEEEEEecCceeeec-cCCCceeeccC
Q 014475          264 SLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFR--LAKGPVNNILVVRRPLYLNLG-SFSNPHTSSRR  339 (424)
Q Consensus       264 ~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~~~~~~--~~~~~v~~l~~s~~~~~l~~~-~~d~~i~iw~~  339 (424)
                      ....|...+.++.|.| +..+++++.|+.+.+||..+........  .|...+..+.|.+++..++.+ ..|+.+.+|+.
T Consensus       279 ~~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~  358 (466)
T COG2319         279 TLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDL  358 (466)
T ss_pred             EEecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEeecCCCcEEeeec
Confidence            3367889999999999 8888888888999999999888777776  788889999994332455555 68899999999


Q ss_pred             CCCC
Q 014475          340 HGSQ  343 (424)
Q Consensus       340 ~~~~  343 (424)
                      ....
T Consensus       359 ~~~~  362 (466)
T COG2319         359 RTGK  362 (466)
T ss_pred             CCCc
Confidence            8765

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.88  E-value=1.6e-20  Score=156.86  Aligned_cols=287  Identities=10%  Similarity=0.065  Sum_probs=217.6

Q ss_pred             CCCCceEEecceeecCCCccccCCCCceeEEEEECCC------Cceee--eecCCCCeeEEEECCCCCEEEEecCCCcEE
Q 014475           34 SPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSK------PQVEV--KSLPAEPIKPIAANSHGTYIAGGGQSGDIY  105 (424)
Q Consensus        34 ~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~------~~~~~--~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~  105 (424)
                      +|...|.++.  |+.++++|+++|.| -.+++|+++.      ++...  ...|...|.|++|...++.+.+|+.+++|.
T Consensus        54 ~H~GCiNAlq--FS~N~~~L~SGGDD-~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI  130 (609)
T KOG4227|consen   54 EHTGCINALQ--FSHNDRFLASGGDD-MHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVI  130 (609)
T ss_pred             hhccccceee--eccCCeEEeecCCc-ceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeE
Confidence            4556777888  99999999999988 9999999863      22222  233568999999999999999999999999


Q ss_pred             EEEccCcceeeeecc--ccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEE
Q 014475          106 MWEVASGRLLKKWHA--HYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVI  183 (424)
Q Consensus       106 iwd~~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  183 (424)
                      ..|+++.+.+..+..  ..+.|..+..+|..+.|++.+.+|.|.+||.+....        ................+.|
T Consensus       131 ~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~--------~~~~~~~AN~~~~F~t~~F  202 (609)
T KOG4227|consen  131 KHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQN--------PISLVLPANSGKNFYTAEF  202 (609)
T ss_pred             eeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCC--------CCceeeecCCCccceeeee
Confidence            999999988877642  346899999999999999999999999999976221        1112222334456677888


Q ss_pred             EEcCceeEEEEEeCCCcEEEEecCCCce-eeeee----cCc---ceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCC
Q 014475          184 GYGGVSATIVSASEDRTCKVWSLLKGRL-LRNIV----FPS---VIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTS  255 (424)
Q Consensus       184 ~~~~~~~~l~~~~~d~~v~iwd~~~~~~-~~~~~----~~~---~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~  255 (424)
                      +|..+ .+|++.+..+-+-+||.+..+. +....    .+.   .-..+.|+|+|..|++--....-.+||+-...    
T Consensus       203 ~P~~P-~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R----  277 (609)
T KOG4227|consen  203 HPETP-ALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQR----  277 (609)
T ss_pred             cCCCc-eeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeeccc----
Confidence            88765 7889999999999999986532 11111    122   22567899999999887777777788887753    


Q ss_pred             CcCceeeeeec-c-----cCcCeEEEEecCCCEEEEeCCCCcEEEEeCCC----------C-------------cEEEEE
Q 014475          256 SYGMHIIGSLS-D-----HSKAVTCLAYSTGDLLISGSEDGMVRVWDPIT----------H-------------NIVRMF  306 (424)
Q Consensus       256 ~~~~~~~~~~~-~-----~~~~i~~~~~~~~~~l~t~~~dg~i~iwd~~~----------~-------------~~~~~~  306 (424)
                          .++..+. .     ....+.+++|....-+++|+.+-.|++|.+..          |             +.+..+
T Consensus       278 ----~~V~k~D~N~~GY~N~~T~KS~~F~~D~~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VL  353 (609)
T KOG4227|consen  278 ----CFVLKSDHNPNGYCNIKTIKSMTFIDDYTVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVL  353 (609)
T ss_pred             ----ceeEeccCCCCcceeeeeeeeeeeecceeeeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEE
Confidence                1122221 0     12356677787666799999999999998742          1             234577


Q ss_pred             eccCCCeeEEEEEecCceeeeccCCCceeeccCC
Q 014475          307 RLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRH  340 (424)
Q Consensus       307 ~~~~~~v~~l~~s~~~~~l~~~~~d~~i~iw~~~  340 (424)
                      ++|..-++.+.|+|...+|++.+-.+.+++|.-.
T Consensus       354 rGHRSv~NQVRF~~H~~~l~SSGVE~~~KlWS~~  387 (609)
T KOG4227|consen  354 RGHRSVPNQVRFSQHNNLLVSSGVENSFKLWSDH  387 (609)
T ss_pred             ecccccccceeecCCcceEeccchhhheeccccc
Confidence            8999999999999999999999999999999765

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.87  E-value=7.1e-21  Score=168.17  Aligned_cols=156  Identities=18%  Similarity=0.222  Sum_probs=122.1

Q ss_pred             eeEEEEEEcCceeEEEEEeCCCcEEEEecCCCc-------eeeeee-cCcceeEEEECC-CCCEEEEEeCCCcEEEEEcC
Q 014475          178 ITDIVIGYGGVSATIVSASEDRTCKVWSLLKGR-------LLRNIV-FPSVIDAIALDP-AEHVFYAGSRDGSIYIAALN  248 (424)
Q Consensus       178 i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~-------~~~~~~-~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~  248 (424)
                      |+++.|.|-.. ..|++++.||.|++|.+..+.       +...+. |...|+.+.|+| ....|++++.|-+|++||++
T Consensus       630 vtDl~WdPFD~-~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~  708 (1012)
T KOG1445|consen  630 VTDLHWDPFDD-ERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLA  708 (1012)
T ss_pred             eeecccCCCCh-HHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehh
Confidence            34444554333 689999999999999987543       233333 788999999999 56789999999999999999


Q ss_pred             CCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCCCc-EEEEEeccC-CCeeEEEEEecCcee
Q 014475          249 AESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHN-IVRMFRLAK-GPVNNILVVRRPLYL  325 (424)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~-~~~~~~~~~-~~v~~l~~s~~~~~l  325 (424)
                      +.         .....+.+|.+.|..++|+| |+.+++.+.||+|++|+.++++ +++.-++.. ..--.+.|..||+++
T Consensus       709 ~~---------~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~v  779 (1012)
T KOG1445|consen  709 NA---------KLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIV  779 (1012)
T ss_pred             hh---------hhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEE
Confidence            97         45667889999999999999 9999999999999999998764 344333222 234578899999999


Q ss_pred             eeccCCCc----eeeccCCCCC
Q 014475          326 NLGSFSNP----HTSSRRHGSQ  343 (424)
Q Consensus       326 ~~~~~d~~----i~iw~~~~~~  343 (424)
                      ++.+.|..    |.+|+..+-.
T Consensus       780 iv~Gfdk~SeRQv~~Y~Aq~l~  801 (1012)
T KOG1445|consen  780 IVVGFDKSSERQVQMYDAQTLD  801 (1012)
T ss_pred             EEecccccchhhhhhhhhhhcc
Confidence            98887764    7788776543

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.87  E-value=9.5e-21  Score=150.05  Aligned_cols=297  Identities=12%  Similarity=0.139  Sum_probs=202.0

Q ss_pred             eEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCcee--eeecCCCCeeEEEECCCCCEEEEecCCC
Q 014475           25 EQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVE--VKSLPAEPIKPIAANSHGTYIAGGGQSG  102 (424)
Q Consensus        25 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~--~~~~~~~~v~~~~~s~~~~~l~~~~~dg  102 (424)
                      +...+++|   ...++++.  |-.+++ |.++... |.|++|++++....  +...+...|+.+.--|++ .+.+-+.|+
T Consensus         6 P~fvLRp~---~~~v~s~~--fqa~~r-L~sg~~~-G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~d-~l~tqgRd~   77 (323)
T KOG0322|consen    6 PFFVLRPH---SSSVTSVL--FQANER-LMSGLSV-GIVKMWVLQTERDLPLIRLFGRLFITNLQSIPND-SLDTQGRDP   77 (323)
T ss_pred             CeeEeccc---cchheehh--hccchh-hhccccc-ceEEEEEeecCccchhhhhhccceeeceeecCCc-chhhcCCCc
Confidence            44455544   45677777  877776 6666666 99999999987654  334578899999999984 577778999


Q ss_pred             cEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEeeCCC-cEEEEeCCcccchhcccccccceEEee----cCCcCc
Q 014475          103 DIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDG-CVRIWSLLTVFEECESQRASHLYLHSF----TGHTLR  177 (424)
Q Consensus       103 ~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg-~i~iwd~~~~~~~~~~~~~~~~~~~~~----~~~~~~  177 (424)
                      .+.+|++..+..+..   |.-.++++.|.+-.  +...+... .+..++-+........+......+...    .+..+.
T Consensus        78 ~L~lw~ia~s~~i~i---~Si~~nslgFCrfS--l~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgs  152 (323)
T KOG0322|consen   78 LLILWTIAYSAFISI---HSIVVNSLGFCRFS--LVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGS  152 (323)
T ss_pred             eEEEEEccCcceEEE---eeeeccccccccce--eccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCc
Confidence            999999977554432   44556666665421  22222221 222222222111000001111111111    223455


Q ss_pred             eeEEEEEEc-CceeEEEEEeCCCcEEEEecCCCceeeee-----------ecCcceeEEEECCCCCEEEEEeCCCcEEEE
Q 014475          178 ITDIVIGYG-GVSATIVSASEDRTCKVWSLLKGRLLRNI-----------VFPSVIDAIALDPAEHVFYAGSRDGSIYIA  245 (424)
Q Consensus       178 i~~~~~~~~-~~~~~l~~~~~d~~v~iwd~~~~~~~~~~-----------~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~  245 (424)
                      +.+..+... +..-++++|.++|.+.+||+.++..+..+           .|..++.++.+.+.-..=+.|+.+..+..|
T Consensus       153 vmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~  232 (323)
T KOG0322|consen  153 VMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMY  232 (323)
T ss_pred             eeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceee
Confidence            666654332 22256778889999999999987333222           267889999998866666778888899999


Q ss_pred             EcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCCCcEEEEEeccCCCeeEEEEEecCce
Q 014475          246 ALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLY  324 (424)
Q Consensus       246 d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~  324 (424)
                      +++......     +.-.+..-....|..+..-| ++.+||++.|+.||+|+.++..++..++-|.+.|++++|+|+...
T Consensus       233 Sl~~s~gsl-----q~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~l  307 (323)
T KOG0322|consen  233 SLNHSTGSL-----QIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCEL  307 (323)
T ss_pred             eeccccCcc-----cccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCch
Confidence            987653221     11122222345677888888 999999999999999999999999999999999999999999999


Q ss_pred             eeeccCCCceeeccC
Q 014475          325 LNLGSFSNPHTSSRR  339 (424)
Q Consensus       325 l~~~~~d~~i~iw~~  339 (424)
                      +|+++.|+.|-+|++
T Consensus       308 mAaaskD~rISLWkL  322 (323)
T KOG0322|consen  308 MAAASKDARISLWKL  322 (323)
T ss_pred             hhhccCCceEEeeec
Confidence            999999999999986

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.87  E-value=2.6e-20  Score=173.48  Aligned_cols=284  Identities=19%  Similarity=0.262  Sum_probs=209.9

Q ss_pred             CeEEEeecCCCCCceEEEeCCCCceEEEeeCCCCCCCceEEecceeec--CCCccccCCCCceeEEEEECCCC-----ce
Q 014475            1 MELLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLA--SSQLREQPSASSGSILYWSWSKP-----QV   73 (424)
Q Consensus         1 ~e~~lat~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~~l~~~~~~~g~i~vwd~~~~-----~~   73 (424)
                      +|-.+++++ ..-.|+|||.+.++.+..|..+..+...|+.+.  +..  |..++++++.| |.|+||+-...     +.
T Consensus      1075 f~p~i~~ad-~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~--liNe~D~aLlLtas~d-GvIRIwk~y~~~~~~~eL 1150 (1387)
T KOG1517|consen 1075 FEPQIAAAD-DRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLE--LINEQDDALLLTASSD-GVIRIWKDYADKWKKPEL 1150 (1387)
T ss_pred             CCceeEEcC-CcceEEEEecccCceeccccCCCCCCCccceee--eecccchhheeeeccC-ceEEEecccccccCCcee
Confidence            356788888 788999999999999999998888888898888  653  45677788887 99999985322     11


Q ss_pred             eeeec--------CCCCeeEEEECCCCCEEEEecCCCcEEEEEccCcceeeeecc-ccCCeEEEEEcc-CCcEEEEeeCC
Q 014475           74 EVKSL--------PAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHA-HYRAVTCLVFSE-DGSFLISGSED  143 (424)
Q Consensus        74 ~~~~~--------~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~-~~~~i~~~~~~~-~~~~l~s~~~d  143 (424)
                      .....        ..+.=.-++|.....+|+++|.-..|+|||.........+.. ....|+++.-+. .|+.+++|..|
T Consensus      1151 VTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaD 1230 (1387)
T KOG1517|consen 1151 VTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFAD 1230 (1387)
T ss_pred             EEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecC
Confidence            11110        111114556777666677767678999999988877776643 445677766543 57999999999


Q ss_pred             CcEEEEeCCcccchhcccccccceEEeecCCcCc--eeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeee---c-
Q 014475          144 GCVRIWSLLTVFEECESQRASHLYLHSFTGHTLR--ITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV---F-  217 (424)
Q Consensus       144 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~--i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~---~-  217 (424)
                      |.|++||.+...        ....+.....|+..  |..+.+.+.|. ..|++|+.+|.|++||++.......+.   + 
T Consensus      1231 GsvRvyD~R~a~--------~ds~v~~~R~h~~~~~Iv~~slq~~G~-~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~ 1301 (1387)
T KOG1517|consen 1231 GSVRVYDRRMAP--------PDSLVCVYREHNDVEPIVHLSLQRQGL-GELVSGSQDGDIQLLDLRMSSKETFLTIVAHW 1301 (1387)
T ss_pred             CceEEeecccCC--------ccccceeecccCCcccceeEEeecCCC-cceeeeccCCeEEEEecccCcccccceeeecc
Confidence            999999997632        22456677788877  99999999886 379999999999999999743222222   1 


Q ss_pred             --CcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEE
Q 014475          218 --PSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRV  294 (424)
Q Consensus       218 --~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~i  294 (424)
                        .+..+++..+++...+++|+. +.|.||++.........+....   +....+.+.|++|+| .-++|+|+.|..|.|
T Consensus      1302 ~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~~l~~~k~n~~F---~~q~~gs~scL~FHP~~~llAaG~~Ds~V~i 1377 (1387)
T KOG1517|consen 1302 EYGSALTALTVHEHAPIIASGSA-QLIKIYSLSGEQLNIIKYNPGF---MGQRIGSVSCLAFHPHRLLLAAGSADSTVSI 1377 (1387)
T ss_pred             ccCccceeeeeccCCCeeeecCc-ceEEEEecChhhhcccccCccc---ccCcCCCcceeeecchhHhhhhccCCceEEE
Confidence              335999999999999999998 9999999987654322211111   112335679999999 888999999999999


Q ss_pred             EeCCCCc
Q 014475          295 WDPITHN  301 (424)
Q Consensus       295 wd~~~~~  301 (424)
                      |.....+
T Consensus      1378 Ys~~k~~ 1384 (1387)
T KOG1517|consen 1378 YSCEKPR 1384 (1387)
T ss_pred             eecCCcC
Confidence            9876543

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.87  E-value=1.7e-19  Score=165.43  Aligned_cols=318  Identities=14%  Similarity=0.156  Sum_probs=225.8

Q ss_pred             CCceEEEeCCCCceEE-EeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCC-----CceeeeecCCCCeeE
Q 014475           12 DTGIGCWDLESGAEQL-RYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSK-----PQVEVKSLPAEPIKP   85 (424)
Q Consensus        12 dg~i~vwd~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~-----~~~~~~~~~~~~v~~   85 (424)
                      +..+.+|+.+++.... ....+..|...++|.+  ++|.++++|++..+ |.|.+|.--.     .......=|..+|++
T Consensus       180 ~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~--~spn~~~~Aa~d~d-GrI~vw~d~~~~~~~~t~t~lHWH~~~V~~  256 (792)
T KOG1963|consen  180 MCKIHIYFVPKHTKHTSSRDITVHHTFNITCVA--LSPNERYLAAGDSD-GRILVWRDFGSSDDSETCTLLHWHHDEVNS  256 (792)
T ss_pred             eeeEEEEEecccceeeccchhhhhhcccceeEE--eccccceEEEeccC-CcEEEEeccccccccccceEEEecccccce
Confidence            3568899988765211 1112223434478888  99999999999998 9999997433     122333447889999


Q ss_pred             EEECCCCCEEEEecCCCcEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhccccccc
Q 014475           86 IAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASH  165 (424)
Q Consensus        86 ~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~  165 (424)
                      ++|+++|.+|.+|+..|.+.+|.+++++ .+-++.-.++|..+.++||+.+.+....|..|.+....+............
T Consensus       257 L~fS~~G~~LlSGG~E~VLv~Wq~~T~~-kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~  335 (792)
T KOG1963|consen  257 LSFSSDGAYLLSGGREGVLVLWQLETGK-KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKP  335 (792)
T ss_pred             eEEecCCceEeecccceEEEEEeecCCC-cccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccC
Confidence            9999999999999999999999999998 555666789999999999999999999999999998865433222211111


Q ss_pred             ceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeee------c------CcceeEEEECCCCCEE
Q 014475          166 LYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV------F------PSVIDAIALDPAEHVF  233 (424)
Q Consensus       166 ~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~------~------~~~i~~~~~~~~~~~l  233 (424)
                      ..-..-....+-.+.++++|..  +.++-.+..|.|.+||+.+.+.+..+.      +      ...++.++.+..|.++
T Consensus       336 ~~~~~k~~~~~l~t~~~idpr~--~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~m  413 (792)
T KOG1963|consen  336 PTPSTKTRPQSLTTGVSIDPRT--NSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWM  413 (792)
T ss_pred             CCccccccccccceeEEEcCCC--CceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEE
Confidence            1001112234556677888855  778888999999999999887776664      1      1246777777789988


Q ss_pred             EEEe--------CCC--cEEEEEcCCCCCCCCCcCcee-eeeecccCcCeEEEEecC---CCEEEEeCCCCcEEEEeCCC
Q 014475          234 YAGS--------RDG--SIYIAALNAESPSTSSYGMHI-IGSLSDHSKAVTCLAYST---GDLLISGSEDGMVRVWDPIT  299 (424)
Q Consensus       234 ~~~~--------~dg--~i~i~d~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~---~~~l~t~~~dg~i~iwd~~~  299 (424)
                      ++.-        .||  .+++|-........     .+ ......|...+...++.+   ....++++.||.++||-+..
T Consensus       414 aT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~-----~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~  488 (792)
T KOG1963|consen  414 ATLEARIDKFNFFDGEVSLKFWQYNPNSKTF-----ILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTD  488 (792)
T ss_pred             EEeeeeehhhhccCceEEEEEEEEcCCccee-----EEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEec
Confidence            8853        233  57788876654221     22 223345777666665544   34899999999999998833


Q ss_pred             Cc----------EEEEEeccCCCeeEEEEEecCceeeeccCCCceeeccCCC
Q 014475          300 HN----------IVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHG  341 (424)
Q Consensus       300 ~~----------~~~~~~~~~~~v~~l~~s~~~~~l~~~~~d~~i~iw~~~~  341 (424)
                      .+          +...-.-|..++++++|+.||. +++.+.|+.|.+||..+
T Consensus       489 ~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~dGs-lla~s~~~~Itiwd~~~  539 (792)
T KOG1963|consen  489 DSNIYKKSSNWTCKAIGSYHKTPITALCFSQDGS-LLAVSFDDTITIWDYDT  539 (792)
T ss_pred             ccccCcCccceEEeeeeccccCcccchhhcCCCc-EEEEecCCEEEEecCCC
Confidence            21          2222223788999999999995 55566899999999987

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.87  E-value=3.1e-20  Score=149.17  Aligned_cols=272  Identities=13%  Similarity=0.165  Sum_probs=199.1

Q ss_pred             CceEEecceee--cC-CCccccCCCC---ceeEEEEECC--CCceeee--ecCCCCeeEEEECCCC-----CEEEEecCC
Q 014475           37 HGLACVGQRFL--AS-SQLREQPSAS---SGSILYWSWS--KPQVEVK--SLPAEPIKPIAANSHG-----TYIAGGGQS  101 (424)
Q Consensus        37 ~~v~~~~~~~~--~~-~~~l~~~~~~---~g~i~vwd~~--~~~~~~~--~~~~~~v~~~~~s~~~-----~~l~~~~~d  101 (424)
                      -.+.+++  |+  ++ ..++|.++-.   .+.|.+-.++  +++....  ..|.-+++.+.|.|+.     .+||+.+  
T Consensus        45 ~~lya~~--Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlLATs~--  120 (364)
T KOG0290|consen   45 WPLYAMN--WSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPDLLATSS--  120 (364)
T ss_pred             Cceeeec--cccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCcchhhccc--
Confidence            3466666  66  33 3345555422   2566666554  3343333  4678899999999976     3566543  


Q ss_pred             CcEEEEEccCcce----eeee-----ccccCCeEEEEEcc-CCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEee
Q 014475          102 GDIYMWEVASGRL----LKKW-----HAHYRAVTCLVFSE-DGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSF  171 (424)
Q Consensus       102 g~v~iwd~~~~~~----~~~~-----~~~~~~i~~~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  171 (424)
                      ..+++|.+...+.    ...+     ..+..++++..|+. +.+++.+++-|-+..|||++++        ........+
T Consensus       121 D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~--------~~~~vkTQL  192 (364)
T KOG0290|consen  121 DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETG--------VSGTVKTQL  192 (364)
T ss_pred             CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeec--------cccceeeEE
Confidence            3799999874221    1111     24667999999987 7889999999999999999773        122234556


Q ss_pred             cCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeee----cCcceeEEEECC-CCCEEEEEeC-CCcEEEE
Q 014475          172 TGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV----FPSVIDAIALDP-AEHVFYAGSR-DGSIYIA  245 (424)
Q Consensus       172 ~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~----~~~~i~~~~~~~-~~~~l~~~~~-dg~i~i~  245 (424)
                      -.|...|.+++|...+. +.|++.+.||.+|+||++..+-...+.    ...+...++|++ +.+++++-.. ...|.+.
T Consensus       193 IAHDKEV~DIaf~~~s~-~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iL  271 (364)
T KOG0290|consen  193 IAHDKEVYDIAFLKGSR-DVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVIL  271 (364)
T ss_pred             EecCcceeEEEeccCcc-ceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEE
Confidence            78999999999998654 899999999999999999766444333    245678899998 4566776544 4579999


Q ss_pred             EcCCCCCCCCCcCceeeeeecccCcCeEEEEecC--CCEEEEeCCCCcEEEEeCCCCc------EEEEEeccCCCeeEEE
Q 014475          246 ALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST--GDLLISGSEDGMVRVWDPITHN------IVRMFRLAKGPVNNIL  317 (424)
Q Consensus       246 d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~l~t~~~dg~i~iwd~~~~~------~~~~~~~~~~~v~~l~  317 (424)
                      |++...        .++..+++|.+.|+.++|.|  ...|++++.|..+.+||+.+.-      ++..+. ..++|+.+.
T Consensus       272 DiR~P~--------tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~-a~~EVNqi~  342 (364)
T KOG0290|consen  272 DIRVPC--------TPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYT-AGGEVNQIQ  342 (364)
T ss_pred             EecCCC--------cceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhhh-ccceeeeee
Confidence            999985        78899999999999999999  8899999999999999997532      222233 457999999


Q ss_pred             EEe-cCceeeeccC
Q 014475          318 VVR-RPLYLNLGSF  330 (424)
Q Consensus       318 ~s~-~~~~l~~~~~  330 (424)
                      |++ .+.+++.+..
T Consensus       343 Ws~~~~Dwiai~~~  356 (364)
T KOG0290|consen  343 WSSSQPDWIAICFG  356 (364)
T ss_pred             ecccCCCEEEEEec
Confidence            995 5667776643

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.87  E-value=6.9e-21  Score=155.11  Aligned_cols=222  Identities=20%  Similarity=0.243  Sum_probs=175.4

Q ss_pred             EEEeecCCCCCceEEEeCCCCceEEEeeCC--CCCCCceEEecceeecCCCccccCCCCceeEEEEECCC-Ccee---e-
Q 014475            3 LLIASSSVADTGIGCWDLESGAEQLRYKSC--ASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSK-PQVE---V-   75 (424)
Q Consensus         3 ~~lat~~~~dg~i~vwd~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~-~~~~---~-   75 (424)
                      .++|+.+ .|.-|++||.-+|+....++.-  .....+..+++  |+|||..|.++-.  ..|+++|+.. +...   . 
T Consensus       124 ~l~a~ss-r~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~--Fs~DGeqlfaGyk--rcirvFdt~RpGr~c~vy~t  198 (406)
T KOG2919|consen  124 NLFAVSS-RDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQ--FSPDGEQLFAGYK--RCIRVFDTSRPGRDCPVYTT  198 (406)
T ss_pred             ceeeecc-ccCceeeeeccccccccchhhhhhHHhhhhheeEE--ecCCCCeEeeccc--ceEEEeeccCCCCCCcchhh
Confidence            5678888 9999999999999998887643  33445567888  9999999988876  7999999943 2211   1 


Q ss_pred             ----eecCCCCeeEEEECC-CCCEEEEecCCCcEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEeeC-CCcEEEE
Q 014475           76 ----KSLPAEPIKPIAANS-HGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSE-DGCVRIW  149 (424)
Q Consensus        76 ----~~~~~~~v~~~~~s~-~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~-dg~i~iw  149 (424)
                          +....+-+.|++|+| +.+.++.|+....+-||.-..+.++..+.+|.+.|+.++|.++|+.|++|+. |-.|..|
T Consensus       199 ~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~W  278 (406)
T KOG2919|consen  199 VTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCW  278 (406)
T ss_pred             hhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEE
Confidence                122366789999999 5669999999999999998889999999999999999999999999999986 6689999


Q ss_pred             eCCcccchhcccccccceEEeecCCcC-ceeEEEEEEcCceeEEEEEeCCCcEEEEecCC-Cceeeeee-cCcceeEEEE
Q 014475          150 SLLTVFEECESQRASHLYLHSFTGHTL-RITDIVIGYGGVSATIVSASEDRTCKVWSLLK-GRLLRNIV-FPSVIDAIAL  226 (424)
Q Consensus       150 d~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~-~~~~~~~~-~~~~i~~~~~  226 (424)
                      |++.          ...++..+..|.. .-..|.|.-+..+++|++|+.||.|++||+++ +..+..+. +...++.+++
T Consensus       279 DiR~----------~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvsl  348 (406)
T KOG2919|consen  279 DIRY----------SRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSL  348 (406)
T ss_pred             eehh----------ccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCcccccccccccccceec
Confidence            9975          2334445555654 33455666555559999999999999999987 66454444 7889999999


Q ss_pred             CCCCCEEEEEeCC
Q 014475          227 DPAEHVFYAGSRD  239 (424)
Q Consensus       227 ~~~~~~l~~~~~d  239 (424)
                      +|.=.++++++..
T Consensus       349 nP~mpilatssGq  361 (406)
T KOG2919|consen  349 NPIMPILATSSGQ  361 (406)
T ss_pred             CcccceeeeccCc
Confidence            9997777776643

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.87  E-value=4.2e-20  Score=154.36  Aligned_cols=213  Identities=14%  Similarity=0.196  Sum_probs=169.0

Q ss_pred             eeccccCCeEEEEEcc-CCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEE
Q 014475          117 KWHAHYRAVTCLVFSE-DGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSA  195 (424)
Q Consensus       117 ~~~~~~~~i~~~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~  195 (424)
                      .+.+|.++|..+.|+| +.+.+++||.|.+|.||++.......    ....++..+.+|...|.-++|+|... +.|+++
T Consensus        76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~----~ltepvv~L~gH~rrVg~V~wHPtA~-NVLlsa  150 (472)
T KOG0303|consen   76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTR----DLTEPVVELYGHQRRVGLVQWHPTAP-NVLLSA  150 (472)
T ss_pred             CccCccccccccccCccCCceeecCCCCceEEEEECCCccccc----CcccceEEEeecceeEEEEeecccch-hhHhhc
Confidence            3478999999999999 77889999999999999996543221    22356788999999999999999876 899999


Q ss_pred             eCCCcEEEEecCCCceeeeeecCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCc--CeE
Q 014475          196 SEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSK--AVT  273 (424)
Q Consensus       196 ~~d~~v~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~--~i~  273 (424)
                      +.|.+|.+||+.+++.+..+.|+..|.+++|+.+|.++++.+.|.+|++||.+.+         +.+..-.+|.+  +..
T Consensus       151 g~Dn~v~iWnv~tgeali~l~hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~---------~~v~e~~~heG~k~~R  221 (472)
T KOG0303|consen  151 GSDNTVSIWNVGTGEALITLDHPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRG---------TVVSEGVAHEGAKPAR  221 (472)
T ss_pred             cCCceEEEEeccCCceeeecCCCCeEEEEEeccCCceeeeecccceeEEEcCCCC---------cEeeecccccCCCcce
Confidence            9999999999999999999999999999999999999999999999999999998         45555566764  333


Q ss_pred             EEEecCCCEEEEeC---CCCcEEEEeCCCCcE---EEEEeccCCCeeEEEEEecCcee-eeccCCCceeeccCCCCCC
Q 014475          274 CLAYSTGDLLISGS---EDGMVRVWDPITHNI---VRMFRLAKGPVNNILVVRRPLYL-NLGSFSNPHTSSRRHGSQL  344 (424)
Q Consensus       274 ~~~~~~~~~l~t~~---~dg~i~iwd~~~~~~---~~~~~~~~~~v~~l~~s~~~~~l-~~~~~d~~i~iw~~~~~~~  344 (424)
                      .+-...+.++-||-   .+..+.+||..+-+.   ..++. ..+.|.---|.+|...+ ++|-.|+.||.+.+....+
T Consensus       222 aifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elD-tSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~P  298 (472)
T KOG0303|consen  222 AIFLASGKIFTTGFSRMSERQIALWDPNNLEEPIALQELD-TSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEPP  298 (472)
T ss_pred             eEEeccCceeeeccccccccceeccCcccccCcceeEEec-cCCceEEeeecCCCCEEEEEecCCcceEEEEecCCCc
Confidence            44333366444442   477899999876432   33343 23445555677887777 6677999999999987654

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.87  E-value=4.9e-20  Score=147.89  Aligned_cols=274  Identities=16%  Similarity=0.214  Sum_probs=196.5

Q ss_pred             CCCceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCCC----c---eeEEEEECCCCcee-----e---
Q 014475           11 ADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSAS----S---GSILYWSWSKPQVE-----V---   75 (424)
Q Consensus        11 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~----~---g~i~vwd~~~~~~~-----~---   75 (424)
                      .|..|.+-+++.+.....-+....+.+.|..++  -+|..+.+++....    .   ..+.||.+..+...     .   
T Consensus        38 ~dNqVhll~~d~e~s~l~skvf~h~agEvw~la--s~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v  115 (370)
T KOG1007|consen   38 EDNQVHLLRLDSEGSELLSKVFFHHAGEVWDLA--SSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECV  115 (370)
T ss_pred             CcceeEEEEecCccchhhhhhhhcCCcceehhh--cCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHh
Confidence            356777777765543322233444567788877  77776665544321    1   35789998754322     1   


Q ss_pred             ---eecCCCCeeEEEECCCCCEEEEecCCCcEEEEEccCcce-eeee-----ccccCCeEEEEEcc--CCcEEEEeeCCC
Q 014475           76 ---KSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRL-LKKW-----HAHYRAVTCLVFSE--DGSFLISGSEDG  144 (424)
Q Consensus        76 ---~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~-~~~~-----~~~~~~i~~~~~~~--~~~~l~s~~~dg  144 (424)
                         ...+-+.|.|+.|.|++..+++-. |..|.+|+++++.. ...+     ..|....++-+|+|  +++.+++. .|+
T Consensus       116 ~~Ldteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt-~d~  193 (370)
T KOG1007|consen  116 ASLDTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATT-SDS  193 (370)
T ss_pred             hcCCHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEe-CCC
Confidence               112345899999999999998865 78899999988765 3333     23566788889998  77777776 478


Q ss_pred             cEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCC-ceeeeee-cCccee
Q 014475          145 CVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKG-RLLRNIV-FPSVID  222 (424)
Q Consensus       145 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~-~~~~~~~-~~~~i~  222 (424)
                      ++..||+++..+          ....-..|...+.++.|+|+.. .+|++++.||.|++||.+.. .++..+. |...+.
T Consensus       194 tl~~~D~RT~~~----------~~sI~dAHgq~vrdlDfNpnkq-~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW  262 (370)
T KOG1007|consen  194 TLQFWDLRTMKK----------NNSIEDAHGQRVRDLDFNPNKQ-HILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVW  262 (370)
T ss_pred             cEEEEEccchhh----------hcchhhhhcceeeeccCCCCce-EEEEEcCCCccEEEEeccCCCccccccCCCceEEE
Confidence            999999987432          2223356888999999999875 78999999999999999864 4555555 888999


Q ss_pred             EEEECC-CCCEEEEEeCCCcEEEEEcCCCCC--------------------CCCCcCceeeeeecccCcCeEEEEecC--
Q 014475          223 AIALDP-AEHVFYAGSRDGSIYIAALNAESP--------------------STSSYGMHIIGSLSDHSKAVTCLAYST--  279 (424)
Q Consensus       223 ~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~--------------------~~~~~~~~~~~~~~~~~~~i~~~~~~~--  279 (424)
                      ++.|+| ..+++++|+.|..+.+|....-..                    ...+..-..+.++..|+..|.+++|+.  
T Consensus       263 ~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsad  342 (370)
T KOG1007|consen  263 AVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSAD  342 (370)
T ss_pred             EEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCC
Confidence            999999 567888999999999997654321                    001112234557788999999999998  


Q ss_pred             CCEEEEeCCCCcEEEEeCCC
Q 014475          280 GDLLISGSEDGMVRVWDPIT  299 (424)
Q Consensus       280 ~~~l~t~~~dg~i~iwd~~~  299 (424)
                      .-.+|+-+.||.+.|=.+..
T Consensus       343 PWiFASLSYDGRviIs~V~r  362 (370)
T KOG1007|consen  343 PWIFASLSYDGRVIISSVPR  362 (370)
T ss_pred             CeeEEEeccCceEEeecCCh
Confidence            55778889999998876553

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.86  E-value=1e-18  Score=156.23  Aligned_cols=264  Identities=13%  Similarity=0.117  Sum_probs=175.5

Q ss_pred             ceeEEEEECCC-Ccee--eeecCCCCeeEEEECCCCCEEEEec-CCCcEEEEEccC-cce--eeeeccccCCeEEEEEcc
Q 014475           60 SGSILYWSWSK-PQVE--VKSLPAEPIKPIAANSHGTYIAGGG-QSGDIYMWEVAS-GRL--LKKWHAHYRAVTCLVFSE  132 (424)
Q Consensus        60 ~g~i~vwd~~~-~~~~--~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~v~iwd~~~-~~~--~~~~~~~~~~i~~~~~~~  132 (424)
                      ++.|.+|++.+ ++..  ......+....++++|++++|++++ .++.|.+|++.. ++.  +.... ..+....+.|+|
T Consensus        11 ~~~I~~~~~~~~g~l~~~~~~~~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~~p~~i~~~~   89 (330)
T PRK11028         11 SQQIHVWNLNHEGALTLLQVVDVPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPGSPTHISTDH   89 (330)
T ss_pred             CCCEEEEEECCCCceeeeeEEecCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec-CCCCceEEEECC
Confidence            49999999963 3322  2223456778899999999987764 478899999963 332  22222 234567899999


Q ss_pred             CCcEEEEeeC-CCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEE-EEEeCCCcEEEEecCCCc
Q 014475          133 DGSFLISGSE-DGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATI-VSASEDRTCKVWSLLKGR  210 (424)
Q Consensus       133 ~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l-~~~~~d~~v~iwd~~~~~  210 (424)
                      +++++++++. ++.|.+|++++....       ........ +......++++|++  +++ ++...++.|.+||+.+..
T Consensus        90 ~g~~l~v~~~~~~~v~v~~~~~~g~~-------~~~~~~~~-~~~~~~~~~~~p~g--~~l~v~~~~~~~v~v~d~~~~g  159 (330)
T PRK11028         90 QGRFLFSASYNANCVSVSPLDKDGIP-------VAPIQIIE-GLEGCHSANIDPDN--RTLWVPCLKEDRIRLFTLSDDG  159 (330)
T ss_pred             CCCEEEEEEcCCCeEEEEEECCCCCC-------CCceeecc-CCCcccEeEeCCCC--CEEEEeeCCCCEEEEEEECCCC
Confidence            9998887764 789999999531100       01112222 22345667889887  555 455567999999997633


Q ss_pred             eee-------eeecCcceeEEEECCCCCEEEEEeC-CCcEEEEEcCCCCCCCCCcCceeeeeecc------cCcCeEEEE
Q 014475          211 LLR-------NIVFPSVIDAIALDPAEHVFYAGSR-DGSIYIAALNAESPSTSSYGMHIIGSLSD------HSKAVTCLA  276 (424)
Q Consensus       211 ~~~-------~~~~~~~i~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~~------~~~~i~~~~  276 (424)
                      .+.       ..........+.|+|+++++++... ++.|.+|+++.....     .+.+..+..      +......+.
T Consensus       160 ~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~-----~~~~~~~~~~p~~~~~~~~~~~i~  234 (330)
T PRK11028        160 HLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGE-----IECVQTLDMMPADFSDTRWAADIH  234 (330)
T ss_pred             cccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCC-----EEEEEEEecCCCcCCCCccceeEE
Confidence            221       1223455678999999999988876 899999999743110     122222211      122334688


Q ss_pred             ecC-CCEEEEeC-CCCcEEEEeCCCCc----EEEEEeccCCCeeEEEEEecCceeeeccC-CCceeeccCC
Q 014475          277 YST-GDLLISGS-EDGMVRVWDPITHN----IVRMFRLAKGPVNNILVVRRPLYLNLGSF-SNPHTSSRRH  340 (424)
Q Consensus       277 ~~~-~~~l~t~~-~dg~i~iwd~~~~~----~~~~~~~~~~~v~~l~~s~~~~~l~~~~~-d~~i~iw~~~  340 (424)
                      ++| +++++++. .++.|.+|++....    .+..+... .....+.++|+|++|+++.. ++.|.+|+++
T Consensus       235 ~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~-~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~  304 (330)
T PRK11028        235 ITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTE-TQPRGFNIDHSGKYLIAAGQKSHHISVYEID  304 (330)
T ss_pred             ECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEecc-ccCCceEECCCCCEEEEEEccCCcEEEEEEc
Confidence            999 88888885 47899999986543    22332221 24568999999999987764 8899999875

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.85  E-value=4.9e-19  Score=138.83  Aligned_cols=251  Identities=19%  Similarity=0.211  Sum_probs=182.7

Q ss_pred             CeeEEEECCCCCEEEEecCCCcEEEEEccCc----------ceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeC
Q 014475           82 PIKPIAANSHGTYIAGGGQSGDIYMWEVASG----------RLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSL  151 (424)
Q Consensus        82 ~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~----------~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~  151 (424)
                      .|.+-+++|.+++|++|..+|.|.+..+.+.          ..+...++|.++|..++|.  ..+|++|+ ||.|+-|..
T Consensus        12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g-dG~V~gw~W   88 (325)
T KOG0649|consen   12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG-DGLVYGWEW   88 (325)
T ss_pred             HHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeecc-CceEEEeee
Confidence            4556689999999999999999999988542          2344558999999999998  45777776 599999988


Q ss_pred             Ccccchhcc--cccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeee-cCcceeEEEECC
Q 014475          152 LTVFEECES--QRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDP  228 (424)
Q Consensus       152 ~~~~~~~~~--~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~-~~~~i~~~~~~~  228 (424)
                      +...+....  ......+.+.-...--.|+++-..|..  +-+++++.|+.++-||+++|+..+.+. |.+.+.++.-..
T Consensus        89 ~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~e--nSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~  166 (325)
T KOG0649|consen   89 NEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSE--NSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRN  166 (325)
T ss_pred             hhhhhhccchhhhhhcCccccCcccCCccceeEeccCC--CcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecc
Confidence            654331110  000011111111123467888888877  666777789999999999999999998 899999999877


Q ss_pred             CCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeeccc-CcCeEEEEecCCCEEEEeCCCCcEEEEeCCCCcEEEEEe
Q 014475          229 AEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDH-SKAVTCLAYSTGDLLISGSEDGMVRVWDPITHNIVRMFR  307 (424)
Q Consensus       229 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~  307 (424)
                      ....+++|+.||++++||.++.+........+....++.| ...|.+++.+ .+++++|+ ...+.+|++++.++...|.
T Consensus       167 ~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~-edWlvCGg-Gp~lslwhLrsse~t~vfp  244 (325)
T KOG0649|consen  167 ANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVN-EDWLVCGG-GPKLSLWHLRSSESTCVFP  244 (325)
T ss_pred             cCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEecc-CceEEecC-CCceeEEeccCCCceEEEe
Confidence            7778999999999999999998543222211222223333 3457777765 67888776 4569999999999988887


Q ss_pred             ccCCCeeEEEEEecCceeeeccCCCceeeccCCCC
Q 014475          308 LAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGS  342 (424)
Q Consensus       308 ~~~~~v~~l~~s~~~~~l~~~~~d~~i~iw~~~~~  342 (424)
                       -.+++..+.|..|  .+++++....+.-|.+.+.
T Consensus       245 -ipa~v~~v~F~~d--~vl~~G~g~~v~~~~l~Gv  276 (325)
T KOG0649|consen  245 -IPARVHLVDFVDD--CVLIGGEGNHVQSYTLNGV  276 (325)
T ss_pred             -cccceeEeeeecc--eEEEeccccceeeeeeccE
Confidence             4578888899765  6777888888888887743

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.85  E-value=4.3e-19  Score=162.32  Aligned_cols=270  Identities=20%  Similarity=0.243  Sum_probs=197.7

Q ss_pred             CCceEEEeCCCC-ceEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCcee-------eeecCCCCe
Q 014475           12 DTGIGCWDLESG-AEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVE-------VKSLPAEPI   83 (424)
Q Consensus        12 dg~i~vwd~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~-------~~~~~~~~v   83 (424)
                      ++.+.|||+... .+...+.    ....|.|+.  |+|....++++|..+|.|.+||+......       ....|..++
T Consensus       221 ~~~~~vW~~~~p~~Pe~~~~----~~s~v~~~~--f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v  294 (555)
T KOG1587|consen  221 DGVLLVWSLKNPNTPELVLE----SPSEVTCLK--FCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPV  294 (555)
T ss_pred             CceEEEEecCCCCCceEEEe----cCCceeEEE--eccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCe
Confidence            457999999876 3444443    346688888  99988888888777799999999876542       223478899


Q ss_pred             eEEEECCCC--CEEEEecCCCcEEEEEccCcceee------eec------cccCCeEEEEEcc-CCcEEEEeeCCCcEEE
Q 014475           84 KPIAANSHG--TYIAGGGQSGDIYMWEVASGRLLK------KWH------AHYRAVTCLVFSE-DGSFLISGSEDGCVRI  148 (424)
Q Consensus        84 ~~~~~s~~~--~~l~~~~~dg~v~iwd~~~~~~~~------~~~------~~~~~i~~~~~~~-~~~~l~s~~~dg~i~i  148 (424)
                      +.+.|-.+.  .-+++++.||.|..|+++.-....      ...      .....+++++|.+ +...+++|+.+|.|.-
T Consensus       295 ~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~  374 (555)
T KOG1587|consen  295 TAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYK  374 (555)
T ss_pred             EEEEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEE
Confidence            999997654  449999999999999886442211      111      1234688999988 6678999999999877


Q ss_pred             EeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecC-CCceeeeee-cCcceeEEEE
Q 014475          149 WSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLL-KGRLLRNIV-FPSVIDAIAL  226 (424)
Q Consensus       149 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~-~~~~~~~~~-~~~~i~~~~~  226 (424)
                      -+.........   ........+..|.++|.++.++|-.. ..+++++ |.+++||... ...++..+. ....+++++|
T Consensus       375 ~~r~g~~~~~~---~~~~~~~~~~~h~g~v~~v~~nPF~~-k~fls~g-DW~vriWs~~~~~~Pl~~~~~~~~~v~~vaW  449 (555)
T KOG1587|consen  375 GCRKGYTPAPE---VSYKGHSTFITHIGPVYAVSRNPFYP-KNFLSVG-DWTVRIWSEDVIASPLLSLDSSPDYVTDVAW  449 (555)
T ss_pred             EeccCCccccc---ccccccccccccCcceEeeecCCCcc-ceeeeec-cceeEeccccCCCCcchhhhhccceeeeeEE
Confidence            44332111110   11123445677999999999999874 4445555 9999999987 555555555 5667999999


Q ss_pred             CCC-CCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCC
Q 014475          227 DPA-EHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPIT  299 (424)
Q Consensus       227 ~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~  299 (424)
                      ||. ...|+++..+|.|.+||+.....       .++....-+....+.+.|++ +..|++|...|.+.+|++..
T Consensus       450 SptrpavF~~~d~~G~l~iWDLl~~~~-------~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~  517 (555)
T KOG1587|consen  450 SPTRPAVFATVDGDGNLDIWDLLQDDE-------EPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLSE  517 (555)
T ss_pred             cCcCceEEEEEcCCCceehhhhhcccc-------CCcccccccccccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence            995 56788888999999999987652       34445544567778889999 99999999999999999864

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.85  E-value=3.9e-18  Score=152.56  Aligned_cols=268  Identities=12%  Similarity=0.141  Sum_probs=174.0

Q ss_pred             CCCceEEEeCCC-Cc--eEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCC-Cceeee--ecCCCCee
Q 014475           11 ADTGIGCWDLES-GA--EQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSK-PQVEVK--SLPAEPIK   84 (424)
Q Consensus        11 ~dg~i~vwd~~~-~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~-~~~~~~--~~~~~~v~   84 (424)
                      .++.|.+||+.+ |+  .++++...    .....+.  ++|++++|++++..++.|.+|+++. +.....  ........
T Consensus        10 ~~~~I~~~~~~~~g~l~~~~~~~~~----~~~~~l~--~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~p~   83 (330)
T PRK11028         10 ESQQIHVWNLNHEGALTLLQVVDVP----GQVQPMV--ISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLPGSPT   83 (330)
T ss_pred             CCCCEEEEEECCCCceeeeeEEecC----CCCccEE--ECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecCCCCce
Confidence            589999999974 33  33444321    2344556  9999999887766559999999973 333222  22344667


Q ss_pred             EEEECCCCCEEEEecC-CCcEEEEEccCc-c---eeeeeccccCCeEEEEEccCCcEEEEee-CCCcEEEEeCCcccchh
Q 014475           85 PIAANSHGTYIAGGGQ-SGDIYMWEVASG-R---LLKKWHAHYRAVTCLVFSEDGSFLISGS-EDGCVRIWSLLTVFEEC  158 (424)
Q Consensus        85 ~~~~s~~~~~l~~~~~-dg~v~iwd~~~~-~---~~~~~~~~~~~i~~~~~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~  158 (424)
                      .++|+|+++++++++. ++.|.+|++++. .   .+..+. +.....+++++|+++++++++ .++.|.+||+.+.....
T Consensus        84 ~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~  162 (330)
T PRK11028         84 HISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLV  162 (330)
T ss_pred             EEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCccc
Confidence            8999999998888764 788999999643 2   222222 334567889999998886554 56899999996521100


Q ss_pred             cccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeC-CCcEEEEecCC--Cc--eeeeee-cC------cceeEEEE
Q 014475          159 ESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASE-DRTCKVWSLLK--GR--LLRNIV-FP------SVIDAIAL  226 (424)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~-d~~v~iwd~~~--~~--~~~~~~-~~------~~i~~~~~  226 (424)
                      .    ......... .......+.|+|++  ++++++.. ++.|.+||++.  ++  .+..+. .+      .....+.+
T Consensus       163 ~----~~~~~~~~~-~g~~p~~~~~~pdg--~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~  235 (330)
T PRK11028        163 A----QEPAEVTTV-EGAGPRHMVFHPNQ--QYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHI  235 (330)
T ss_pred             c----cCCCceecC-CCCCCceEEECCCC--CEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEE
Confidence            0    000001111 12345678999998  77777765 89999999973  32  222222 11      12336889


Q ss_pred             CCCCCEEEEEeC-CCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCC-CCcEEEEeCC
Q 014475          227 DPAEHVFYAGSR-DGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSE-DGMVRVWDPI  298 (424)
Q Consensus       227 ~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~-dg~i~iwd~~  298 (424)
                      +|++++++++.. ++.|.+|+++.....     ...+..... ......+.++| +++|+++.. +++|.+|++.
T Consensus       236 ~pdg~~lyv~~~~~~~I~v~~i~~~~~~-----~~~~~~~~~-~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~  304 (330)
T PRK11028        236 TPDGRHLYACDRTASLISVFSVSEDGSV-----LSFEGHQPT-ETQPRGFNIDHSGKYLIAAGQKSHHISVYEID  304 (330)
T ss_pred             CCCCCEEEEecCCCCeEEEEEEeCCCCe-----EEEeEEEec-cccCCceEECCCCCEEEEEEccCCcEEEEEEc
Confidence            999999999864 689999999654211     122222221 13455789999 888887764 8999999874

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.84  E-value=2.8e-20  Score=162.33  Aligned_cols=255  Identities=21%  Similarity=0.240  Sum_probs=190.6

Q ss_pred             CCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCc---------eeeeecCCCCeeEEEECCCCCEEEEecCCCc
Q 014475           33 ASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQ---------VEVKSLPAEPIKPIAANSHGTYIAGGGQSGD  103 (424)
Q Consensus        33 ~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~---------~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~  103 (424)
                      ..|..++..++  |.|....+++++.+ |++.+|++++..         ......|.++|.|+++.+++..+.+|+.||+
T Consensus       291 ~s~~d~ir~l~--~~~sep~lit~sed-~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~  367 (577)
T KOG0642|consen  291 RSHDDCIRALA--FHPSEPVLITASED-GTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGT  367 (577)
T ss_pred             ecchhhhhhhh--cCCCCCeEEEeccc-cchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCce
Confidence            34667888888  99999999999998 999999994311         1133468999999999999999999999999


Q ss_pred             EEEEEccCc----------ceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecC
Q 014475          104 IYMWEVASG----------RLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTG  173 (424)
Q Consensus       104 v~iwd~~~~----------~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  173 (424)
                      |+.|++...          .....+.+|.+.|+.+++++....|++++.||+++.|+......          +......
T Consensus       368 I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~----------~~f~~~~  437 (577)
T KOG0642|consen  368 IRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP----------CTFGEPK  437 (577)
T ss_pred             eeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc----------cccCCcc
Confidence            999965421          23456789999999999999888999999999999999854211          1111111


Q ss_pred             CcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeee--------cCcceeEEEECCCCCEEEEEeCCCcEEEE
Q 014475          174 HTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV--------FPSVIDAIALDPAEHVFYAGSRDGSIYIA  245 (424)
Q Consensus       174 ~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~--------~~~~i~~~~~~~~~~~l~~~~~dg~i~i~  245 (424)
                      ..+.-.++.+..... ...++...-+.-.+.++.....+..+.        ....+..+.++|...+.+++..|+.|+++
T Consensus       438 e~g~Plsvd~~ss~~-a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~  516 (577)
T KOG0642|consen  438 EHGYPLSVDRTSSRP-AHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFF  516 (577)
T ss_pred             ccCCcceEeeccchh-HhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecc
Confidence            112223333332211 233333333444445554444444433        12457888999999999999999999999


Q ss_pred             EcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCCCcEEEEEeccC
Q 014475          246 ALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAK  310 (424)
Q Consensus       246 d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~  310 (424)
                      |..++         .++.....|...++++++.| +.+|++++.|+.+++|.+....++.....|.
T Consensus       517 dn~~~---------~~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~es~~~r  573 (577)
T KOG0642|consen  517 DNKTG---------KILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVLESTAHR  573 (577)
T ss_pred             ccccc---------ccchheeeccceecceeecCCCceEEeecCCceeehhhccchheeecccccc
Confidence            99997         66778888999999999999 9999999999999999998888877766664

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.84  E-value=1.2e-19  Score=157.53  Aligned_cols=262  Identities=15%  Similarity=0.172  Sum_probs=192.0

Q ss_pred             CCCceEEecceeecCCCccccCCCCceeEEEEECCCCceeeeecCCCCeeEEEE-C-------CCCCEEEEecCCCcEEE
Q 014475           35 PPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSLPAEPIKPIAA-N-------SHGTYIAGGGQSGDIYM  106 (424)
Q Consensus        35 ~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~~~~~~~v~~~~~-s-------~~~~~l~~~~~dg~v~i  106 (424)
                      +...+.|+.  |+.+...+.++..+ ..+.-|++..........+...+....+ -       .....++.++.||.+.|
T Consensus        13 ~~e~vc~v~--w~~~eei~~~~dDh-~~~~~~~~~~~s~~~~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~i   89 (737)
T KOG1524|consen   13 NSEKVCCVD--WSSNEEIYFVSDDH-QIFKWSDVSRDSVEVAKLPDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRFVI   89 (737)
T ss_pred             cceeEEeec--ccccceEEEeccCc-eEEEeecccchhhhhhhCCcccCCccccccccccCCCCCcceEEEEcCCceEEE
Confidence            345566777  88887776666554 6666666665544433333222222111 1       12346888899999999


Q ss_pred             EEccCcceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEc
Q 014475          107 WEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYG  186 (424)
Q Consensus       107 wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  186 (424)
                      .+ +.++.......|.+.+.+-.|+|+|.-|++++.||.|++|.-..            ....++.....+|.|++|.|+
T Consensus        90 l~-k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsG------------MLRStl~Q~~~~v~c~~W~p~  156 (737)
T KOG1524|consen   90 LN-KSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSG------------MLRSTVVQNEESIRCARWAPN  156 (737)
T ss_pred             ec-ccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccc------------hHHHHHhhcCceeEEEEECCC
Confidence            87 67888888899999999999999999999999999999998633            222334456779999999999


Q ss_pred             CceeEEEEEeCCCcEEEEecCCC-ceeeeeecCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeee
Q 014475          187 GVSATIVSASEDRTCKVWSLLKG-RLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSL  265 (424)
Q Consensus       187 ~~~~~l~~~~~d~~v~iwd~~~~-~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~  265 (424)
                      .+ +.+++.+  +.+.|=.+... ++++--.|++-|.++.|+|..+.+++|+.|-+.++||-...          .+...
T Consensus       157 S~-~vl~c~g--~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G~----------~Lf~S  223 (737)
T KOG1524|consen  157 SN-SIVFCQG--GHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQGA----------NLFTS  223 (737)
T ss_pred             CC-ceEEecC--CeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeecccCc----------ccccC
Confidence            84 4444433  45666665544 34444449999999999999999999999999999998873          46667


Q ss_pred             cccCcCeEEEEecCCCEEEEeCCCCcEEEEeCCCCcEEEEEeccCCCeeEEEEEecCceeeeccCCCceeec
Q 014475          266 SDHSKAVTCLAYSTGDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSS  337 (424)
Q Consensus       266 ~~~~~~i~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~d~~i~iw  337 (424)
                      ..|+.+|++++|+|...++.++.+ ++|+           -+...+.|..++||+||..+++|...|.+.+=
T Consensus       224 ~~~ey~ITSva~npd~~~~v~S~n-t~R~-----------~~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~A  283 (737)
T KOG1524|consen  224 AAEEYAITSVAFNPEKDYLLWSYN-TARF-----------SSPRVGSIFNLSWSADGTQATCGTSTGQLIVA  283 (737)
T ss_pred             Chhccceeeeeeccccceeeeeee-eeee-----------cCCCccceEEEEEcCCCceeeccccCceEEEe
Confidence            789999999999997666666542 3441           12345789999999999999999999987643

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.84  E-value=6.4e-19  Score=164.37  Aligned_cols=276  Identities=16%  Similarity=0.253  Sum_probs=196.7

Q ss_pred             eecCCCccccCCCCceeEEEEECCCCceeeeec----CCCCeeEEEECC--CCCEEEEecCCCcEEEEEccCc-----ce
Q 014475           46 FLASSQLREQPSASSGSILYWSWSKPQVEVKSL----PAEPIKPIAANS--HGTYIAGGGQSGDIYMWEVASG-----RL  114 (424)
Q Consensus        46 ~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~~~----~~~~v~~~~~s~--~~~~l~~~~~dg~v~iwd~~~~-----~~  114 (424)
                      |+|-...++++... -.|+|||++.++......    ....|+.+.+-.  |..++++|+.||.|+||+--..     +.
T Consensus      1072 ~hpf~p~i~~ad~r-~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eL 1150 (1387)
T KOG1517|consen 1072 FHPFEPQIAAADDR-ERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPEL 1150 (1387)
T ss_pred             ecCCCceeEEcCCc-ceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEecccccccCCcee
Confidence            88888888888866 799999999887653332    356788888854  5678999999999999975322     22


Q ss_pred             eeeec-------cccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEee-cCCcCceeEEEEEEc
Q 014475          115 LKKWH-------AHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSF-TGHTLRITDIVIGYG  186 (424)
Q Consensus       115 ~~~~~-------~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~  186 (424)
                      +..+.       +..+.=.-+.|..+..+|++++.-..|+|||...           ......+ .+....++++.-+..
T Consensus      1151 VTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~-----------E~~~~diP~~s~t~vTaLS~~~~ 1219 (1387)
T KOG1517|consen 1151 VTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHK-----------EQVVADIPYGSSTLVTALSADLV 1219 (1387)
T ss_pred             EEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEeccc-----------ceeEeecccCCCccceeeccccc
Confidence            22221       1112224466777666677776678999999955           2222222 234556666665544


Q ss_pred             CceeEEEEEeCCCcEEEEecCCCce---eeeee-cCcc--eeEEEECCCCCE-EEEEeCCCcEEEEEcCCCCCCCCCcCc
Q 014475          187 GVSATIVSASEDRTCKVWSLLKGRL---LRNIV-FPSV--IDAIALDPAEHV-FYAGSRDGSIYIAALNAESPSTSSYGM  259 (424)
Q Consensus       187 ~~~~~l~~~~~d~~v~iwd~~~~~~---~~~~~-~~~~--i~~~~~~~~~~~-l~~~~~dg~i~i~d~~~~~~~~~~~~~  259 (424)
                      . ++.+++|..||.|++||.+....   +.... |...  |..+.+.+.|-- +++|+.+|.|++||++.....      
T Consensus      1220 ~-gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e------ 1292 (1387)
T KOG1517|consen 1220 H-GNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKE------ 1292 (1387)
T ss_pred             C-CceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCccc------
Confidence            3 38999999999999999886543   22222 5544  999999886654 999999999999999985211      


Q ss_pred             eeeeeeccc---CcCeEEEEecC-CCEEEEeCCCCcEEEEeCCCCcEEEEEecc-------CCCeeEEEEEecCceeeec
Q 014475          260 HIIGSLSDH---SKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLA-------KGPVNNILVVRRPLYLNLG  328 (424)
Q Consensus       260 ~~~~~~~~~---~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~-------~~~v~~l~~s~~~~~l~~~  328 (424)
                       .......|   .+..+++..++ ...+|+|+. +.|+||++. |+.+..++.+       .+.+.+++|+|....||+|
T Consensus      1293 -~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~-G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG 1369 (1387)
T KOG1517|consen 1293 -TFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLS-GEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAG 1369 (1387)
T ss_pred             -ccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecC-hhhhcccccCcccccCcCCCcceeeecchhHhhhhc
Confidence             11122222   23599999999 889999998 999999976 6666555432       3478999999999999999


Q ss_pred             cCCCceeeccCCCCC
Q 014475          329 SFSNPHTSSRRHGSQ  343 (424)
Q Consensus       329 ~~d~~i~iw~~~~~~  343 (424)
                      +.|..|.+|......
T Consensus      1370 ~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1370 SADSTVSIYSCEKPR 1384 (1387)
T ss_pred             cCCceEEEeecCCcC
Confidence            999999999876543

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.84  E-value=6.3e-19  Score=144.18  Aligned_cols=289  Identities=12%  Similarity=0.134  Sum_probs=206.6

Q ss_pred             EEEeecCCCCCceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCceeeeecCCCC
Q 014475            3 LLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSLPAEP   82 (424)
Q Consensus         3 ~~lat~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~~~~~~~   82 (424)
                      .+|.... .|+.|.+|++...+-...+...   ..++.+..  |+|+|+.++..+.-+-.|.||.+.+............
T Consensus        62 ~ilC~~y-k~~~vqvwsl~Qpew~ckIdeg---~agls~~~--WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~pK~~  135 (447)
T KOG4497|consen   62 HILCVAY-KDPKVQVWSLVQPEWYCKIDEG---QAGLSSIS--WSPDGRHILLTSEFDLRITVWSLNTQKGYLLPHPKTN  135 (447)
T ss_pred             eeeeeee-ccceEEEEEeecceeEEEeccC---CCcceeee--ECCCcceEeeeecceeEEEEEEeccceeEEecccccC
Confidence            5677777 9999999999988877777643   35677777  9999988887777669999999999888777777888


Q ss_pred             eeEEEECCCCCEEEEecCCCc---EEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEeeC--CCcEEEEeCCcccch
Q 014475           83 IKPIAANSHGTYIAGGGQSGD---IYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSE--DGCVRIWSLLTVFEE  157 (424)
Q Consensus        83 v~~~~~s~~~~~l~~~~~dg~---v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~--dg~i~iwd~~~~~~~  157 (424)
                      +..++|+|||++.+..+.-..   +.|.....-..++.+....-..+.+.|+|||+.|++-..  +-.|..|.       
T Consensus       136 ~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe-------  208 (447)
T KOG4497|consen  136 VKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYE-------  208 (447)
T ss_pred             ceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheeeeee-------
Confidence            899999999999988765322   333222333455556656667788999999887765322  11111111       


Q ss_pred             hcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeee---------------------
Q 014475          158 CESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV---------------------  216 (424)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~---------------------  216 (424)
                                      ..-.+..+.|+|.+  ++++.|+.|+.+++.+--+.++..++-                     
T Consensus       209 ----------------~~lG~k~v~wsP~~--qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~  270 (447)
T KOG4497|consen  209 ----------------RGLGLKFVEWSPCN--QFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIV  270 (447)
T ss_pred             ----------------eccceeEEEecccc--ceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchh
Confidence                            22467778899987  899999999998886542222111110                     


Q ss_pred             ----------------------------------------------cCcceeEEEECCCCCEEEEEeCC--CcEEEEEcC
Q 014475          217 ----------------------------------------------FPSVIDAIALDPAEHVFYAGSRD--GSIYIAALN  248 (424)
Q Consensus       217 ----------------------------------------------~~~~i~~~~~~~~~~~l~~~~~d--g~i~i~d~~  248 (424)
                                                                    ....+..++|++|..++++-.+.  +.+.+||++
T Consensus       271 ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq  350 (447)
T KOG4497|consen  271 QLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQ  350 (447)
T ss_pred             hhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEech
Confidence                                                          01146678999999988886543  578999999


Q ss_pred             CCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCCCcEEEEEeccCCCeeEEEEEecCceeee
Q 014475          249 AESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNL  327 (424)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~  327 (424)
                      ..+          +...-....+|.+..|+| ...|+.+.....+++|...-...+.. ....-.|..+.|.-+|..++.
T Consensus       351 ~l~----------l~avLiQk~piraf~WdP~~prL~vctg~srLY~W~psg~~~V~v-P~~GF~i~~l~W~~~g~~i~l  419 (447)
T KOG4497|consen  351 NLK----------LHAVLIQKHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSGPRVVGV-PKKGFNIQKLQWLQPGEFIVL  419 (447)
T ss_pred             hhh----------hhhhhhhccceeEEEeCCCCceEEEEcCCceEEEEcCCCceEEec-CCCCceeeeEEecCCCcEEEE
Confidence            853          333334567899999999 56666666677799999775444443 333468999999999999998


Q ss_pred             ccCCCc
Q 014475          328 GSFSNP  333 (424)
Q Consensus       328 ~~~d~~  333 (424)
                      .+.|--
T Consensus       420 ~~kDaf  425 (447)
T KOG4497|consen  420 CGKDAF  425 (447)
T ss_pred             EcCCce
Confidence            887764

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.84  E-value=1.3e-18  Score=159.67  Aligned_cols=339  Identities=14%  Similarity=0.106  Sum_probs=228.9

Q ss_pred             eEEEeecCCCCCceEEEeCCC-CceEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCceeeeecCC
Q 014475            2 ELLIASSSVADTGIGCWDLES-GAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSLPA   80 (424)
Q Consensus         2 e~~lat~~~~dg~i~vwd~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~~~~~   80 (424)
                      |.++|+|. .||.|.+|.--. ...-.+.....=|.+.|.+++  |+++|.+|++||.. |.+.+|.+.+++..+.....
T Consensus       217 ~~~~Aa~d-~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~--fS~~G~~LlSGG~E-~VLv~Wq~~T~~kqfLPRLg  292 (792)
T KOG1963|consen  217 ERYLAAGD-SDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLS--FSSDGAYLLSGGRE-GVLVLWQLETGKKQFLPRLG  292 (792)
T ss_pred             cceEEEec-cCCcEEEEeccccccccccceEEEecccccceeE--EecCCceEeecccc-eEEEEEeecCCCcccccccC
Confidence            57899999 999999998432 111112222233667899999  99999999999998 99999999999987888889


Q ss_pred             CCeeEEEECCCCCEEEEecCCCcEEEEEccCcceeeeecc-----------ccCCeEEEEEccCCcEEEEeeCCCcEEEE
Q 014475           81 EPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHA-----------HYRAVTCLVFSEDGSFLISGSEDGCVRIW  149 (424)
Q Consensus        81 ~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~-----------~~~~i~~~~~~~~~~~l~s~~~dg~i~iw  149 (424)
                      ++|..+.+|||+.+.+....|..|.+....+.+...++.+           ..+-.+.++++|..+.++-.+..|.|.+|
T Consensus       293 s~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~y  372 (792)
T KOG1963|consen  293 SPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFY  372 (792)
T ss_pred             CeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCceeecCCCceEEEE
Confidence            9999999999999999999999999998766554444332           24456788999977778888899999999


Q ss_pred             eCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeC--------C--CcEEEEecCCCce----eeee
Q 014475          150 SLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASE--------D--RTCKVWSLLKGRL----LRNI  215 (424)
Q Consensus       150 d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~--------d--~~v~iwd~~~~~~----~~~~  215 (424)
                      |+.+.....+..............+...++.++.+..+  .+++|.-.        |  -.+++|-......    ...+
T Consensus       373 dl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~g--s~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I  450 (792)
T KOG1963|consen  373 DLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFG--SWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKI  450 (792)
T ss_pred             eccccceeeeEEEEeecccCCcceeEEeeeeehhhccc--eEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEE
Confidence            99764332211110000000001233456666666665  78877642        3  3577887654332    2223


Q ss_pred             e--cCcceeEEEECC--CCCEEEEEeCCCcEEEEEcCCCCCC-CCCcCceeeeeecccCcCeEEEEecCCCEEEEeCCCC
Q 014475          216 V--FPSVIDAIALDP--AEHVFYAGSRDGSIYIAALNAESPS-TSSYGMHIIGSLSDHSKAVTCLAYSTGDLLISGSEDG  290 (424)
Q Consensus       216 ~--~~~~i~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~t~~~dg  290 (424)
                      .  |...+...++.+  ....+++++.||.+++|-+...... .....+.+...-.-|..++++++|+.+.-+++.+.|+
T Consensus       451 ~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~dGslla~s~~~  530 (792)
T KOG1963|consen  451 NNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFSQDGSLLAVSFDD  530 (792)
T ss_pred             ecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCcccchhhcCCCcEEEEecCC
Confidence            2  555555555443  3337899999999999999554332 2222344444444589999999999944566667899


Q ss_pred             cEEEEeCCC-CcEEEEEeccCCCeeEEEEEecC--ceeeeccCCCceeeccCCCCCCCC
Q 014475          291 MVRVWDPIT-HNIVRMFRLAKGPVNNILVVRRP--LYLNLGSFSNPHTSSRRHGSQLPP  346 (424)
Q Consensus       291 ~i~iwd~~~-~~~~~~~~~~~~~v~~l~~s~~~--~~l~~~~~d~~i~iw~~~~~~~~~  346 (424)
                      +|.+||..+ ............++..+.+..+.  ...+.....+.+.+|++....+.-
T Consensus       531 ~Itiwd~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~WNll~~~l~w  589 (792)
T KOG1963|consen  531 TITIWDYDTKNELLCTEGSRNWPIAELLFTAQTQNDGALVHATQQRLSVWNLLSMSLIW  589 (792)
T ss_pred             EEEEecCCChhhhhccccccccchHhHhhhcccccccceeeccCceEehHhhhhhheec
Confidence            999999998 44444444444566666555432  123444566788899987665543

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.83  E-value=1.2e-18  Score=146.34  Aligned_cols=286  Identities=16%  Similarity=0.207  Sum_probs=193.9

Q ss_pred             EEEeecCCCCCceEEEeCCCCc------eEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECC-------
Q 014475            3 LLIASSSVADTGIGCWDLESGA------EQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWS-------   69 (424)
Q Consensus         3 ~~lat~~~~dg~i~vwd~~~~~------~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~-------   69 (424)
                      +.||||+ .|..|+||-+..+.      .+.-+.....|...|.++.  |+|+|..||+++.+ |.|.+|...       
T Consensus        27 ~~laT~G-~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vR--f~p~gelLASg~D~-g~v~lWk~~~~~~~~~  102 (434)
T KOG1009|consen   27 NKLATAG-GDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVR--FSPDGELLASGGDG-GEVFLWKQGDVRIFDA  102 (434)
T ss_pred             cceeccc-CccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEE--EcCCcCeeeecCCC-ceEEEEEecCcCCccc
Confidence            4799999 99999999987543      2333344556778888888  99999999999998 999999876       


Q ss_pred             -C-----C-cee---eeecCCCCeeEEEECCCCCEEEEecCCCcEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEE
Q 014475           70 -K-----P-QVE---VKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLIS  139 (424)
Q Consensus        70 -~-----~-~~~---~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s  139 (424)
                       +     + ...   ....|...|..++|+|+++++++++.|..+++||+..|.....+..|...+..++|.|-++++++
T Consensus       103 d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qyv~s  182 (434)
T KOG1009|consen  103 DTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQYVAS  182 (434)
T ss_pred             cchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeeccccccccceeecchhhhhhhh
Confidence             2     1 111   22347899999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeCCCcEEEEeCCcccchhccc----------ccccceEEee--cCCcCceeEEEEEEcCceeEEEEEeC----CCc---
Q 014475          140 GSEDGCVRIWSLLTVFEECESQ----------RASHLYLHSF--TGHTLRITDIVIGYGGVSATIVSASE----DRT---  200 (424)
Q Consensus       140 ~~~dg~i~iwd~~~~~~~~~~~----------~~~~~~~~~~--~~~~~~i~~~~~~~~~~~~~l~~~~~----d~~---  200 (424)
                      -+.|...+.+++..........          .......+.+  ..-..-...++|+|+|  ..+++...    ++.   
T Consensus       183 ~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG--~llvtPag~~~~g~~~~~  260 (434)
T KOG1009|consen  183 KSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDG--SLLVTPAGLFKVGGGVFR  260 (434)
T ss_pred             hccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCC--cEEEcccceeeeCCceee
Confidence            9999877777664321110000          0000000100  0111223446778887  67765432    222   


Q ss_pred             --EEEEecCC-Cceeeeee-cCcceeEEEEC------------------CCCCEEEEEeCCCcEEEEEcCCCCCCCCCcC
Q 014475          201 --CKVWSLLK-GRLLRNIV-FPSVIDAIALD------------------PAEHVFYAGSRDGSIYIAALNAESPSTSSYG  258 (424)
Q Consensus       201 --v~iwd~~~-~~~~~~~~-~~~~i~~~~~~------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  258 (424)
                        .++++-.. .++...+. ...+...+.++                  |.+-.+++++. ..+++||.+...       
T Consensus       261 n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~-~svyvydtq~~~-------  332 (434)
T KOG1009|consen  261 NTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIATK-NSVYVYDTQTLE-------  332 (434)
T ss_pred             ceeEeeccccccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEeec-ceEEEecccccc-------
Confidence              23333221 12222222 12223333333                  23344555654 579999999864       


Q ss_pred             ceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCCCcEE
Q 014475          259 MHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIV  303 (424)
Q Consensus       259 ~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~~  303 (424)
                       .....-.-|-..|+.++|++ |..++..+.||...+-.++..++-
T Consensus       333 -P~~~v~nihy~~iTDiaws~dg~~l~vSS~DGyCS~vtfe~~elg  377 (434)
T KOG1009|consen  333 -PLAVVDNIHYSAITDIAWSDDGSVLLVSSTDGFCSLVTFEPWELG  377 (434)
T ss_pred             -ceEEEeeeeeeeecceeecCCCcEEEEeccCCceEEEEEcchhcc
Confidence             22223334889999999999 999999999999888776655443

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.83  E-value=6.1e-18  Score=140.54  Aligned_cols=234  Identities=15%  Similarity=0.190  Sum_probs=176.4

Q ss_pred             CCeeEEEECCCCCEEEEecCCCcEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEeeCC--CcEEEEeCCcccchh
Q 014475           81 EPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSED--GCVRIWSLLTVFEEC  158 (424)
Q Consensus        81 ~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d--g~i~iwd~~~~~~~~  158 (424)
                      ..+..+.|+.+...|..|+.|| .++|..+.-............|..+-|+.  .+++..+.+  +.+++.+...     
T Consensus         6 ~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~~~~~~~~~IvEmLFSS--SLvaiV~~~qpr~Lkv~~~Kk-----   77 (391)
T KOG2110|consen    6 PTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCFSKDTEGVSIVEMLFSS--SLVAIVSIKQPRKLKVVHFKK-----   77 (391)
T ss_pred             cceeeeeeccceeEEEccCCCc-eeEEecCchHHhhcccCCCeEEEEeeccc--ceeEEEecCCCceEEEEEccc-----
Confidence            4567777999999999999998 78888765544333333344566677763  455555443  3488888854     


Q ss_pred             cccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeee----cCcceeEEEECCCCCEEE
Q 014475          159 ESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV----FPSVIDAIALDPAEHVFY  234 (424)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~----~~~~i~~~~~~~~~~~l~  234 (424)
                            ...+..+. ...+|.++.++..    +|+++-++. |.|||+++.+++.++.    ++..+.++..++.+.+++
T Consensus        78 ------~~~ICe~~-fpt~IL~VrmNr~----RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylA  145 (391)
T KOG2110|consen   78 ------KTTICEIF-FPTSILAVRMNRK----RLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLA  145 (391)
T ss_pred             ------CceEEEEe-cCCceEEEEEccc----eEEEEEccc-EEEEecccceeehhhhccCCCccceEeeccCCCCceEE
Confidence                  22222222 4567888888664    455555444 9999999999999887    233455555555666887


Q ss_pred             EE--eCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCCCc-EEEEeCCCCcEEEEEeccC
Q 014475          235 AG--SRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGM-VRVWDPITHNIVRMFRLAK  310 (424)
Q Consensus       235 ~~--~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~-i~iwd~~~~~~~~~~~~~~  310 (424)
                      .-  ...|.|.+||..+-         +++..+..|.+++.+++|++ |.+|||+++.|+ ||++.+.+|+.+.+|+...
T Consensus       146 yp~s~t~GdV~l~d~~nl---------~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~  216 (391)
T KOG2110|consen  146 YPGSTTSGDVVLFDTINL---------QPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGT  216 (391)
T ss_pred             ecCCCCCceEEEEEcccc---------eeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCc
Confidence            63  35789999999985         67888889999999999999 999999999997 7999999999999998543


Q ss_pred             --CCeeEEEEEecCceeeeccCCCceeeccCCCCC
Q 014475          311 --GPVNNILVVRRPLYLNLGSFSNPHTSSRRHGSQ  343 (424)
Q Consensus       311 --~~v~~l~~s~~~~~l~~~~~d~~i~iw~~~~~~  343 (424)
                        ..|.+++|+|++++|++.|+.++|.++++....
T Consensus       217 ~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~~  251 (391)
T KOG2110|consen  217 YPVSIYSLSFSPDSQFLAASSNTETVHIFKLEKVS  251 (391)
T ss_pred             eeeEEEEEEECCCCCeEEEecCCCeEEEEEecccc
Confidence              378899999999999999999999999998665

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.83  E-value=4.8e-19  Score=154.18  Aligned_cols=214  Identities=12%  Similarity=0.211  Sum_probs=158.3

Q ss_pred             CCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCcee--eeecCCCCeeEEEECC--CCCEEEEecCCCcEEEEE
Q 014475           33 ASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVE--VKSLPAEPIKPIAANS--HGTYIAGGGQSGDIYMWE  108 (424)
Q Consensus        33 ~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~--~~~~~~~~v~~~~~s~--~~~~l~~~~~dg~v~iwd  108 (424)
                      .+|.+.|.|++  |..+|.+|++|+.| -.+.|||.-..+..  +...|...|.++.|-|  +.+++++|..|..|+++|
T Consensus        47 ~GH~GCVN~Le--Wn~dG~lL~SGSDD-~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfd  123 (758)
T KOG1310|consen   47 TGHTGCVNCLE--WNADGELLASGSDD-TRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFD  123 (758)
T ss_pred             ccccceeccee--ecCCCCEEeecCCc-ceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEEe
Confidence            45667899999  99999999999987 99999998755544  5567899999999998  577899999999999999


Q ss_pred             ccCc----------ceeeeeccccCCeEEEEEccCC-cEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCc
Q 014475          109 VASG----------RLLKKWHAHYRAVTCLVFSEDG-SFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLR  177 (424)
Q Consensus       109 ~~~~----------~~~~~~~~~~~~i~~~~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (424)
                      +...          +....+..|...|..++-.|++ +.+.+++.||+++-+|++........... ...+..+...--.
T Consensus       124 l~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~-~~~l~ny~~~lie  202 (758)
T KOG1310|consen  124 LDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDC-PSILVNYNPQLIE  202 (758)
T ss_pred             cccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccc-cHHHHHhchhhhe
Confidence            9742          3445567899999999999987 78999999999999999763321111100 1111122222345


Q ss_pred             eeEEEEEEcCceeEEEEEeCCCcEEEEecCCC--------c----------eeeeee--c-----------CcceeEEEE
Q 014475          178 ITDIVIGYGGVSATIVSASEDRTCKVWSLLKG--------R----------LLRNIV--F-----------PSVIDAIAL  226 (424)
Q Consensus       178 i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~--------~----------~~~~~~--~-----------~~~i~~~~~  226 (424)
                      ..++.++|..+ .+|++|+.|-..++||.+..        .          ++..+.  |           ...++-++|
T Consensus       203 lk~ltisp~rp-~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtf  281 (758)
T KOG1310|consen  203 LKCLTISPSRP-YYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVTF  281 (758)
T ss_pred             eeeeeecCCCC-ceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEEEEE
Confidence            67888888765 89999999999999995321        1          112121  0           012567789


Q ss_pred             CCCCCEEEEEeCCCcEEEEEcCCCC
Q 014475          227 DPAEHVFYAGSRDGSIYIAALNAES  251 (424)
Q Consensus       227 ~~~~~~l~~~~~dg~i~i~d~~~~~  251 (424)
                      +|+|.-|++.-..-.|+++|+...+
T Consensus       282 npNGtElLvs~~gEhVYlfdvn~~~  306 (758)
T KOG1310|consen  282 NPNGTELLVSWGGEHVYLFDVNEDK  306 (758)
T ss_pred             CCCCcEEEEeeCCeEEEEEeecCCC
Confidence            9999988888777789999886543

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.83  E-value=1.5e-18  Score=164.27  Aligned_cols=304  Identities=16%  Similarity=0.189  Sum_probs=206.0

Q ss_pred             EeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCcee-------eee-cCCCCeeEEEEC
Q 014475           18 WDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVE-------VKS-LPAEPIKPIAAN   89 (424)
Q Consensus        18 wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~-------~~~-~~~~~v~~~~~s   89 (424)
                      |+.+ |..+..+..|...+..+..    -++.+.++++++.| |+|++|+..+-...       ... ....++.++.+.
T Consensus      1034 W~p~-G~lVAhL~Ehs~~v~k~a~----s~~~~s~FvsgS~D-GtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~ 1107 (1431)
T KOG1240|consen 1034 WNPR-GILVAHLHEHSSAVIKLAV----SSEHTSLFVSGSDD-GTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMC 1107 (1431)
T ss_pred             CCcc-ceEeehhhhccccccceee----cCCCCceEEEecCC-ceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEec
Confidence            7754 8888888887766654443    33566888888887 99999998743221       111 257799999999


Q ss_pred             CCCCEEEEecCCCcEEEEEccCcc-------eeeeeccc-cC-CeEEEEEcc-CCc-EEEEeeCCCcEEEEeCCcccchh
Q 014475           90 SHGTYIAGGGQSGDIYMWEVASGR-------LLKKWHAH-YR-AVTCLVFSE-DGS-FLISGSEDGCVRIWSLLTVFEEC  158 (424)
Q Consensus        90 ~~~~~l~~~~~dg~v~iwd~~~~~-------~~~~~~~~-~~-~i~~~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~  158 (424)
                      +.++.+|+++.||.|.+.+++...       ..+....+ .+ .+..-+|.. ... .++.+...+.|..||+++..   
T Consensus      1108 ~~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~--- 1184 (1431)
T KOG1240|consen 1108 GNGDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRH--- 1184 (1431)
T ss_pred             cCCCeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhh---
Confidence            999999999999999999987521       11111212 22 233344433 233 68888889999999997732   


Q ss_pred             cccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeeecC--cceeEEEECCCC---CEE
Q 014475          159 ESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFP--SVIDAIALDPAE---HVF  233 (424)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~--~~i~~~~~~~~~---~~l  233 (424)
                            ...........+.|++++.+|.+  ++++.|+..|.+.+||++-+.++....++  .+++.++.+|-.   ...
T Consensus      1185 ------~~w~lk~~~~hG~vTSi~idp~~--~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~ 1256 (1431)
T KOG1240|consen 1185 ------DAWRLKNQLRHGLVTSIVIDPWC--NWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVS 1256 (1431)
T ss_pred             ------hHHhhhcCccccceeEEEecCCc--eEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceE
Confidence                  22233345567899999999998  89999999999999999999988888744  677888877732   344


Q ss_pred             EE-Ee-CCCcEEEEEcCCCCCCCCCcCc---eeee-eec------ccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCCC
Q 014475          234 YA-GS-RDGSIYIAALNAESPSTSSYGM---HIIG-SLS------DHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITH  300 (424)
Q Consensus       234 ~~-~~-~dg~i~i~d~~~~~~~~~~~~~---~~~~-~~~------~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~  300 (424)
                      ++ ++ ..+.+.+|++.++.........   ..+. ...      .+.-......+.. +.++++|+.|..|+.||....
T Consensus      1257 vs~~~~~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p 1336 (1431)
T KOG1240|consen 1257 VSAGSSSNNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRP 1336 (1431)
T ss_pred             EEecccCCCceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCc
Confidence            44 44 5778999999887532111100   0000 000      1111222233333 889999999999999997543


Q ss_pred             cEE-----------------------------EE-------------------E--------eccCCCeeEEEEEecC-c
Q 014475          301 NIV-----------------------------RM-------------------F--------RLAKGPVNNILVVRRP-L  323 (424)
Q Consensus       301 ~~~-----------------------------~~-------------------~--------~~~~~~v~~l~~s~~~-~  323 (424)
                      +..                             ..                   .        ..|..+|+++++.... .
T Consensus      1337 ~~ss~~~~~~s~~~~~~~~s~~~~~i~~~~~i~e~i~~~~tv~~t~~~~~~~~~~~~~~~ps~~H~d~Itdma~~~~~q~ 1416 (1431)
T KOG1240|consen 1337 EISSYAVPGPSTSYSTNSESYDLSTIPGSQFIDEFIIYQQTVGLTEALRENQKLRPGPSDPSTYHHDPITDMATLKSEQP 1416 (1431)
T ss_pred             ccccccccCccccccccchhccccccCCCccchhhhhhhhhcCchhhcccccccccCCCCCcccccchhhhhhhhccCcc
Confidence            221                             00                   0        0466788888887544 5


Q ss_pred             eeeeccCCCceeecc
Q 014475          324 YLNLGSFSNPHTSSR  338 (424)
Q Consensus       324 ~l~~~~~d~~i~iw~  338 (424)
                      +|++++.||.|++|.
T Consensus      1417 llvs~s~dG~IkiWk 1431 (1431)
T KOG1240|consen 1417 LLVSSSRDGVIKIWK 1431 (1431)
T ss_pred             EEEEecCCCeeeecC
Confidence            789999999999995

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.83  E-value=2.8e-17  Score=146.51  Aligned_cols=323  Identities=12%  Similarity=0.104  Sum_probs=204.0

Q ss_pred             eEEEeecCCCCCceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCceeeeecCCC
Q 014475            2 ELLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSLPAE   81 (424)
Q Consensus         2 e~~lat~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~~~~~~   81 (424)
                      ++++++-. .+|.|.|.|.++.+.+.++......   -..+.  |+|||+++.+++.+ |.|.++|+.+.+.........
T Consensus         6 ~l~~V~~~-~~~~v~viD~~t~~~~~~i~~~~~~---h~~~~--~s~Dgr~~yv~~rd-g~vsviD~~~~~~v~~i~~G~   78 (369)
T PF02239_consen    6 NLFYVVER-GSGSVAVIDGATNKVVARIPTGGAP---HAGLK--FSPDGRYLYVANRD-GTVSVIDLATGKVVATIKVGG   78 (369)
T ss_dssp             GEEEEEEG-GGTEEEEEETTT-SEEEEEE-STTE---EEEEE---TT-SSEEEEEETT-SEEEEEETTSSSEEEEEE-SS
T ss_pred             cEEEEEec-CCCEEEEEECCCCeEEEEEcCCCCc---eeEEE--ecCCCCEEEEEcCC-CeEEEEECCcccEEEEEecCC
Confidence            35566666 7999999999999999999764321   12234  89999999999876 999999999999877777777


Q ss_pred             CeeEEEECCCCCEEEEec-CCCcEEEEEccCcceeeeeccc-------cCCeEEEEEccCCcEEEEeeC-CCcEEEEeCC
Q 014475           82 PIKPIAANSHGTYIAGGG-QSGDIYMWEVASGRLLKKWHAH-------YRAVTCLVFSEDGSFLISGSE-DGCVRIWSLL  152 (424)
Q Consensus        82 ~v~~~~~s~~~~~l~~~~-~dg~v~iwd~~~~~~~~~~~~~-------~~~i~~~~~~~~~~~l~s~~~-dg~i~iwd~~  152 (424)
                      ....+++|+||++++++. ..+.+.++|.++.+.++.+...       ...+..+..+|....++..-. .+.|.+-|..
T Consensus        79 ~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~  158 (369)
T PF02239_consen   79 NPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYS  158 (369)
T ss_dssp             EEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETT
T ss_pred             CcceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEec
Confidence            889999999999999875 5789999999999988877532       345778888887776665555 4788888875


Q ss_pred             cccchhcccccccceEEeecCCcCceeEEEEEEcCceeEE-EEEeCCCcEEEEecCCCceeeeee-----cCcceeEEEE
Q 014475          153 TVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATI-VSASEDRTCKVWSLLKGRLLRNIV-----FPSVIDAIAL  226 (424)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l-~~~~~d~~v~iwd~~~~~~~~~~~-----~~~~i~~~~~  226 (424)
                      +.         .......+ .......+..|+|++  +++ ++...++.|-++|..+++....+.     ++.+...+ .
T Consensus       159 d~---------~~~~~~~i-~~g~~~~D~~~dpdg--ry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~-p  225 (369)
T PF02239_consen  159 DP---------KNLKVTTI-KVGRFPHDGGFDPDG--RYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANF-P  225 (369)
T ss_dssp             TS---------SCEEEEEE-E--TTEEEEEE-TTS--SEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEE-E
T ss_pred             cc---------cccceeee-cccccccccccCccc--ceeeecccccceeEEEeeccceEEEEeeccccccccccccc-c
Confidence            52         22222222 234455678899887  555 445667889999999988877664     33333333 2


Q ss_pred             CCCCCEEEEEeCCCcE--EEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEe----CCCCcEEEEeCCC
Q 014475          227 DPAEHVFYAGSRDGSI--YIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISG----SEDGMVRVWDPIT  299 (424)
Q Consensus       227 ~~~~~~l~~~~~dg~i--~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~----~~dg~i~iwd~~~  299 (424)
                      +|....+...+..+..  -........ ......++.+..+.....+ ..+..+| ++++.+.    ...+.|.++|.++
T Consensus       226 hp~~g~vw~~~~~~~~~~~~ig~~~v~-v~d~~~wkvv~~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~t  303 (369)
T PF02239_consen  226 HPGFGPVWATSGLGYFAIPLIGTDPVS-VHDDYAWKVVKTIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKT  303 (369)
T ss_dssp             ETTTEEEEEEEBSSSSEEEEEE--TTT--STTTBTSEEEEEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCG
T ss_pred             CCCcceEEeeccccceecccccCCccc-cchhhcCeEEEEEECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcC
Confidence            4433223222222222  222222111 1222335778888776666 7788899 8888887    4568999999999


Q ss_pred             CcEEEEEeccC-CCeeEEEEEecCceeeeccCCC--ceeeccCCCCCCCC
Q 014475          300 HNIVRMFRLAK-GPVNNILVVRRPLYLNLGSFSN--PHTSSRRHGSQLPP  346 (424)
Q Consensus       300 ~~~~~~~~~~~-~~v~~l~~s~~~~~l~~~~~d~--~i~iw~~~~~~~~~  346 (424)
                      .+.+.++.... ..+..+.|+++|+++..+..++  .|.++|..+.+...
T Consensus       304 l~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~~~~  353 (369)
T PF02239_consen  304 LKVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTLKEKK  353 (369)
T ss_dssp             TEEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TTEEEEEETTTTEEEE
T ss_pred             cceeEEEeccCCCcEeccEECCCCCEEEEEEecCCCEEEEEECCCcEEEE
Confidence            98888876433 3699999999999775544333  69999998776543

...

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.83  E-value=3.7e-19  Score=148.76  Aligned_cols=245  Identities=16%  Similarity=0.219  Sum_probs=179.7

Q ss_pred             eeecCCCCeeEEEECC-CCCEEEEecCCCcEEEEEccCc-------ceeeeeccccCCeEEEEEcc-CCcEEEEeeCCCc
Q 014475           75 VKSLPAEPIKPIAANS-HGTYIAGGGQSGDIYMWEVASG-------RLLKKWHAHYRAVTCLVFSE-DGSFLISGSEDGC  145 (424)
Q Consensus        75 ~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~v~iwd~~~~-------~~~~~~~~~~~~i~~~~~~~-~~~~l~s~~~dg~  145 (424)
                      ....|.++|..++|+| +.+.||+|++|.+|.||.+..+       +.+..+.+|...|--++|+| -.+.|++++.|..
T Consensus        76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~  155 (472)
T KOG0303|consen   76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNT  155 (472)
T ss_pred             CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCce
Confidence            4457899999999999 6788999999999999999654       45677889999999999999 4567899999999


Q ss_pred             EEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeee-cC-cceeE
Q 014475          146 VRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-FP-SVIDA  223 (424)
Q Consensus       146 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~-~~-~~i~~  223 (424)
                      |.+||+.++.           .+.++. |...|.++.|+.+|  .+|++++.|+.|++||.++++.+..-. |. .....
T Consensus       156 v~iWnv~tge-----------ali~l~-hpd~i~S~sfn~dG--s~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~R  221 (472)
T KOG0303|consen  156 VSIWNVGTGE-----------ALITLD-HPDMVYSMSFNRDG--SLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPAR  221 (472)
T ss_pred             EEEEeccCCc-----------eeeecC-CCCeEEEEEeccCC--ceeeeecccceeEEEcCCCCcEeeecccccCCCcce
Confidence            9999997632           334445 99999999999999  899999999999999999999888774 33 34556


Q ss_pred             EEECCCCCEEEEEe---CCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CC-EEEEeCCCCcEEEEeCC
Q 014475          224 IALDPAEHVFYAGS---RDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GD-LLISGSEDGMVRVWDPI  298 (424)
Q Consensus       224 ~~~~~~~~~l~~~~---~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~-~l~t~~~dg~i~iwd~~  298 (424)
                      +.|-.++..+-+|.   .+..+-+||..+-...      -...++ .....|.-=.|.+ .+ ..++|-.|+.||-|.+.
T Consensus       222 aifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP------~~~~el-DtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit  294 (472)
T KOG0303|consen  222 AIFLASGKIFTTGFSRMSERQIALWDPNNLEEP------IALQEL-DTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEIT  294 (472)
T ss_pred             eEEeccCceeeeccccccccceeccCcccccCc------ceeEEe-ccCCceEEeeecCCCCEEEEEecCCcceEEEEec
Confidence            67777888555553   4678999998775421      112222 2334555555667 44 44556689999999988


Q ss_pred             CCcE-EEEEec--cCCCeeEEEEEecCceeeeccCCCceeeccCCCC
Q 014475          299 THNI-VRMFRL--AKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGS  342 (424)
Q Consensus       299 ~~~~-~~~~~~--~~~~v~~l~~s~~~~~l~~~~~d~~i~iw~~~~~  342 (424)
                      ...+ ++.+..  ...+-..+.|.|..  -+-.+..-..+++++...
T Consensus       295 ~d~P~~hyln~f~S~epQRG~g~mPKR--Gl~Vs~cEI~rfyKl~~~  339 (472)
T KOG0303|consen  295 NEPPFVHYLNTFSSKEPQRGMGFMPKR--GLDVSKCEIARFYKLHER  339 (472)
T ss_pred             CCCceeEEecccccCCccccccccccc--cccchHHHHHHHHHhhcc
Confidence            7653 333322  34567778887753  223333445566666655

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.83  E-value=1e-17  Score=131.46  Aligned_cols=267  Identities=15%  Similarity=0.224  Sum_probs=183.9

Q ss_pred             EEEeecCCCCCceEEEeCCCCceE-------EEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCcee-
Q 014475            3 LLIASSSVADTGIGCWDLESGAEQ-------LRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVE-   74 (424)
Q Consensus         3 ~~lat~~~~dg~i~vwd~~~~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~-   74 (424)
                      .+|++|+ .+|+|.+..+.+-..-       ..+-..++|...+..++  |.  ...|++++.  |.|+=|.+...... 
T Consensus        23 ~~l~agn-~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~--f~--d~~Lls~gd--G~V~gw~W~E~~es~   95 (325)
T KOG0649|consen   23 QYLFAGN-LFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLA--FH--DDFLLSGGD--GLVYGWEWNEEEESL   95 (325)
T ss_pred             eEEEEec-CCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeee--ee--hhheeeccC--ceEEEeeehhhhhhc
Confidence            4688999 9999999997642100       11112245666777777  76  445666654  99999998743320 


Q ss_pred             -----ee---e-----cCCCCeeEEEECCCCCEEEEecCCCcEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEee
Q 014475           75 -----VK---S-----LPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGS  141 (424)
Q Consensus        75 -----~~---~-----~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~  141 (424)
                           +.   .     ..--.|+++-..|..+-++.++.|+.++.||+++|+..+++++|.+.|.++.--.....+++|+
T Consensus        96 ~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qilsG~  175 (325)
T KOG0649|consen   96 ATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQILSGA  175 (325)
T ss_pred             cchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCcceeecC
Confidence                 10   0     1234689999999777777777899999999999999999999999999999865556799999


Q ss_pred             CCCcEEEEeCCcccchhcccccccceEEeecCC-cCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeeecCcc
Q 014475          142 EDGCVRIWSLLTVFEECESQRASHLYLHSFTGH-TLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSV  220 (424)
Q Consensus       142 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~  220 (424)
                      .||++++||.++.......+..+..  ..+..| ...|.+++.+.    .++++|+ ...+.+|.++..++...+..+.+
T Consensus       176 EDGtvRvWd~kt~k~v~~ie~yk~~--~~lRp~~g~wigala~~e----dWlvCGg-Gp~lslwhLrsse~t~vfpipa~  248 (325)
T KOG0649|consen  176 EDGTVRVWDTKTQKHVSMIEPYKNP--NLLRPDWGKWIGALAVNE----DWLVCGG-GPKLSLWHLRSSESTCVFPIPAR  248 (325)
T ss_pred             CCccEEEEeccccceeEEeccccCh--hhcCcccCceeEEEeccC----ceEEecC-CCceeEEeccCCCceEEEecccc
Confidence            9999999999875432222111111  112222 23455555433    5777766 45799999999999999999999


Q ss_pred             eeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC--CCEEEEeCCCCcEEEE
Q 014475          221 IDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST--GDLLISGSEDGMVRVW  295 (424)
Q Consensus       221 i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~l~t~~~dg~i~iw  295 (424)
                      +..+.|.  ...+++++..+.+.-|.+...          ............++..|+.  -++|-.++....+.|+
T Consensus       249 v~~v~F~--~d~vl~~G~g~~v~~~~l~Gv----------l~a~ip~~s~~c~s~s~~~~p~k~~s~ag~s~~~~i~  313 (325)
T KOG0649|consen  249 VHLVDFV--DDCVLIGGEGNHVQSYTLNGV----------LQANIPVESTACYSASWQTSPIKFISIAGFSNKLHIL  313 (325)
T ss_pred             eeEeeee--cceEEEeccccceeeeeeccE----------EEEeccCCccceeeecccCCceEEEEecccceeeeee
Confidence            9999994  556888888888999988763          2223333334445555543  4556566666666665

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.83  E-value=1.4e-19  Score=155.36  Aligned_cols=299  Identities=15%  Similarity=0.164  Sum_probs=223.9

Q ss_pred             CCCCceEEecceeecCCCccccCCCCceeEEEEECCCCceee--eecCCCCeeEEEECC--CCCEEEEecCCCcEEEEEc
Q 014475           34 SPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEV--KSLPAEPIKPIAANS--HGTYIAGGGQSGDIYMWEV  109 (424)
Q Consensus        34 ~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~--~~~~~~~v~~~~~s~--~~~~l~~~~~dg~v~iwd~  109 (424)
                      .|.+.|..+.  |...|..+++++.| ..|.+||+.......  ...|...|..-.|-|  +.+-+++.+.||+|++=.+
T Consensus       140 ~H~GcVntV~--FN~~Gd~l~SgSDD-~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i  216 (559)
T KOG1334|consen  140 KHKGCVNTVH--FNQRGDVLASGSDD-LQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEI  216 (559)
T ss_pred             CCCCccceee--ecccCceeeccCcc-ceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeeeee
Confidence            4555666666  99999999999987 999999998776654  456778888888888  4567899999999998776


Q ss_pred             cCc-ce--eeeeccccCCeEEEEEccC-CcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcC---ceeEEE
Q 014475          110 ASG-RL--LKKWHAHYRAVTCLVFSED-GSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTL---RITDIV  182 (424)
Q Consensus       110 ~~~-~~--~~~~~~~~~~i~~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~---~i~~~~  182 (424)
                      ... .+  ...+..|.++|..++.-|+ ..-|.+++.|+.+.-+|++.......        ...-..+..   ....++
T Consensus       217 ~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~--------~~cr~~~~~~~v~L~~Ia  288 (559)
T KOG1334|consen  217 LETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEK--------FVCREADEKERVGLYTIA  288 (559)
T ss_pred             ccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccce--------eeeeccCCccceeeeeEe
Confidence            433 22  3455679999999999884 45689999999999999977432111        111222233   567788


Q ss_pred             EEEcCceeEEEEEeCCCcEEEEecCCCce------eeeee-------cCcceeEEEECCCCCEEEEEeCCCcEEEEEcCC
Q 014475          183 IGYGGVSATIVSASEDRTCKVWSLLKGRL------LRNIV-------FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNA  249 (424)
Q Consensus       183 ~~~~~~~~~l~~~~~d~~v~iwd~~~~~~------~~~~~-------~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~  249 (424)
                      ..|... ..+++++.|..+++||.+.-..      +..+.       .+..|++++++.++.-+++...|-.|+++.-..
T Consensus       289 ~~P~nt-~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~  367 (559)
T KOG1334|consen  289 VDPRNT-NEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSM  367 (559)
T ss_pred             cCCCCc-cccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEecccc
Confidence            888764 6899999999999999874221      12221       345799999998888888888899999995544


Q ss_pred             CCCCCCCc---Cceeee-eecccCc--CeEEEEe-cC-CCEEEEeCCCCcEEEEeCCCCcEEEEEeccCCCeeEEEEEec
Q 014475          250 ESPSTSSY---GMHIIG-SLSDHSK--AVTCLAY-ST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRR  321 (424)
Q Consensus       250 ~~~~~~~~---~~~~~~-~~~~~~~--~i~~~~~-~~-~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~  321 (424)
                      +.......   ....+. .+++|..  .|..+-| .| ..++++|+.=|.|.||+-.+++.++-+.+...-|+||.-+|.
T Consensus       368 ~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~  447 (559)
T KOG1334|consen  368 GDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPH  447 (559)
T ss_pred             ccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccceEeccCCCCC
Confidence            33211000   011222 2677754  4666655 56 899999999999999999999999999988889999999999


Q ss_pred             CceeeeccCCCceeeccCCCCCC
Q 014475          322 PLYLNLGSFSNPHTSSRRHGSQL  344 (424)
Q Consensus       322 ~~~l~~~~~d~~i~iw~~~~~~~  344 (424)
                      -..||+.+-|..|+||...+.+.
T Consensus       448 ~PvLAsSGid~DVKIWTP~~~er  470 (559)
T KOG1334|consen  448 LPVLASSGIDHDVKIWTPLTAER  470 (559)
T ss_pred             CchhhccCCccceeeecCCcccc
Confidence            99999999999999999865544

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.83  E-value=2.2e-18  Score=140.53  Aligned_cols=244  Identities=16%  Similarity=0.143  Sum_probs=191.4

Q ss_pred             CCCCeeEEEECCCCCEEEEecCCCcEEEEEccCc---ceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCccc
Q 014475           79 PAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASG---RLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVF  155 (424)
Q Consensus        79 ~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~---~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~  155 (424)
                      ..++|+|.+|++|+..+|++.....|.||.....   +...+++.|...|+++.|.|..+.|++|+.|..-++|....+ 
T Consensus         9 ~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~-   87 (361)
T KOG1523|consen    9 LLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSG-   87 (361)
T ss_pred             ccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCC-
Confidence            4679999999999999999999999999998665   467788999999999999999999999999999999998432 


Q ss_pred             chhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCcee-----eeeecCcceeEEEECCCC
Q 014475          156 EECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLL-----RNIVFPSVIDAIALDPAE  230 (424)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~-----~~~~~~~~i~~~~~~~~~  230 (424)
                             ....+...+..++...+++.|+|.+  +.|++|+....|.+|-++...--     ....+...|.++.|+|++
T Consensus        88 -------~~WkptlvLlRiNrAAt~V~WsP~e--nkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnn  158 (361)
T KOG1523|consen   88 -------GTWKPTLVLLRINRAATCVKWSPKE--NKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNN  158 (361)
T ss_pred             -------CeeccceeEEEeccceeeEeecCcC--ceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCc
Confidence                   4556666777899999999999998  89999999999999988654422     122356789999999999


Q ss_pred             CEEEEEeCCCcEEEEEcCCCCC----CCCCcC-----ceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCCC
Q 014475          231 HVFYAGSRDGSIYIAALNAESP----STSSYG-----MHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITH  300 (424)
Q Consensus       231 ~~l~~~~~dg~i~i~d~~~~~~----~~~~~~-----~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~  300 (424)
                      -++++|+.|+..+++..--...    ...+.+     ..++.++....+.+..+.|+| |+.|+-.+.|+.+.+=|....
T Consensus       159 VLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p  238 (361)
T KOG1523|consen  159 VLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGP  238 (361)
T ss_pred             ceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCC
Confidence            9999999999999987532211    111111     122334445678899999999 999999999999999997766


Q ss_pred             c-EEEEEeccCCCeeEEEEEecCceeeeccCCCc
Q 014475          301 N-IVRMFRLAKGPVNNILVVRRPLYLNLGSFSNP  333 (424)
Q Consensus       301 ~-~~~~~~~~~~~v~~l~~s~~~~~l~~~~~d~~  333 (424)
                      . .+.......-|..++.|-.+. .++.++.|..
T Consensus       239 ~~~v~~~~~~~lP~ls~~~ise~-~vv~ag~~c~  271 (361)
T KOG1523|consen  239 SERVQSVATAQLPLLSVSWISEN-SVVAAGYDCG  271 (361)
T ss_pred             chhccchhhccCCceeeEeecCC-ceeecCCCCC
Confidence            4 445554444788888887654 4445555533

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.82  E-value=1.4e-16  Score=132.49  Aligned_cols=281  Identities=15%  Similarity=0.199  Sum_probs=197.4

Q ss_pred             EEeecCCCCCceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCCCc-eeEEEEECCCCceeeeecCCCC
Q 014475            4 LIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASS-GSILYWSWSKPQVEVKSLPAEP   82 (424)
Q Consensus         4 ~lat~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~-g~i~vwd~~~~~~~~~~~~~~~   82 (424)
                      .|..|+ .|| -++++.+.-....    + ....++..+.  -.-...++|..+.++ ..+++.++.+...........+
T Consensus        19 ~lsvGs-~~G-yk~~~~~~~~k~~----~-~~~~~~~IvE--mLFSSSLvaiV~~~qpr~Lkv~~~Kk~~~ICe~~fpt~   89 (391)
T KOG2110|consen   19 LLSVGS-KDG-YKIFSCSPFEKCF----S-KDTEGVSIVE--MLFSSSLVAIVSIKQPRKLKVVHFKKKTTICEIFFPTS   89 (391)
T ss_pred             EEEccC-CCc-eeEEecCchHHhh----c-ccCCCeEEEE--eecccceeEEEecCCCceEEEEEcccCceEEEEecCCc
Confidence            466677 666 5788876544411    1 1223455555  444455665555432 5699999998888888888899


Q ss_pred             eeEEEECCCCCEEEEecCCCcEEEEEccCcceeeeecc---ccCCeEEEEEccCCcEEEEe--eCCCcEEEEeCCcccch
Q 014475           83 IKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHA---HYRAVTCLVFSEDGSFLISG--SEDGCVRIWSLLTVFEE  157 (424)
Q Consensus        83 v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~---~~~~i~~~~~~~~~~~l~s~--~~dg~i~iwd~~~~~~~  157 (424)
                      |.++.++.  +.|++.-.+ .|+|||+++.+.+.++..   +...+.++.+++.+.+++.=  ...|.|.+||..+    
T Consensus        90 IL~VrmNr--~RLvV~Lee-~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~n----  162 (391)
T KOG2110|consen   90 ILAVRMNR--KRLVVCLEE-SIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTIN----  162 (391)
T ss_pred             eEEEEEcc--ceEEEEEcc-cEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEccc----
Confidence            99999975  456665554 599999999999887743   44556666666666788743  3468999999954    


Q ss_pred             hcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCc-EEEEecCCCceeeeee---cCcceeEEEECCCCCEE
Q 014475          158 CESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRT-CKVWSLLKGRLLRNIV---FPSVIDAIALDPAEHVF  233 (424)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~-v~iwd~~~~~~~~~~~---~~~~i~~~~~~~~~~~l  233 (424)
                             .+.+..+..|++++.+++|+++|  .+|+|+++.|+ ||++.+.+|+.+..+.   ....|.+++|+|++.+|
T Consensus       163 -------l~~v~~I~aH~~~lAalafs~~G--~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L  233 (391)
T KOG2110|consen  163 -------LQPVNTINAHKGPLAALAFSPDG--TLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFL  233 (391)
T ss_pred             -------ceeeeEEEecCCceeEEEECCCC--CEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeE
Confidence                   55677888999999999999999  99999999997 7899999999999987   45679999999999999


Q ss_pred             EEEeCCCcEEEEEcCCCCCCCCCcC------------------cee----------eeeecccCc---CeEEEEecC-CC
Q 014475          234 YAGSRDGSIYIAALNAESPSTSSYG------------------MHI----------IGSLSDHSK---AVTCLAYST-GD  281 (424)
Q Consensus       234 ~~~~~dg~i~i~d~~~~~~~~~~~~------------------~~~----------~~~~~~~~~---~i~~~~~~~-~~  281 (424)
                      ++.+..++|++|.+...........                  ...          ....+....   .+..+.-.+ ..
T Consensus       234 ~~sS~TeTVHiFKL~~~~~~~~~~p~~~~~~~~~~sk~~~sylps~V~~~~~~~R~FAt~~l~~s~~~~~~~l~~~~~~~  313 (391)
T KOG2110|consen  234 AASSNTETVHIFKLEKVSNNPPESPTAGTSWFGKVSKAATSYLPSQVSSVLDQSRKFATAKLPESGRKNICSLSSIQKIP  313 (391)
T ss_pred             EEecCCCeEEEEEecccccCCCCCCCCCCcccchhhhhhhhhcchhhhhhhhhccceeEEEccCCCccceEEeeccCCCC
Confidence            9999999999999876432111100                  000          001111111   223332223 67


Q ss_pred             EEEEeCCCCcEEEEeCCC--CcEEEEEecc
Q 014475          282 LLISGSEDGMVRVWDPIT--HNIVRMFRLA  309 (424)
Q Consensus       282 ~l~t~~~dg~i~iwd~~~--~~~~~~~~~~  309 (424)
                      .+..++.||.++.|.+..  |.....++.|
T Consensus       314 ~v~vas~dG~~y~y~l~~~~gGec~lik~h  343 (391)
T KOG2110|consen  314 RVLVASYDGHLYSYRLPPKEGGECALIKRH  343 (391)
T ss_pred             EEEEEEcCCeEEEEEcCCCCCceeEEEEee
Confidence            888899999999998753  5555555544

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.81  E-value=6.8e-18  Score=135.84  Aligned_cols=237  Identities=14%  Similarity=0.195  Sum_probs=172.4

Q ss_pred             CCCCceEEecceeecCCC-----ccccCCCCceeEEEEECCCCc--eee--------eecCCCCeeEEEECC-CCCEEEE
Q 014475           34 SPPHGLACVGQRFLASSQ-----LREQPSASSGSILYWSWSKPQ--VEV--------KSLPAEPIKPIAANS-HGTYIAG   97 (424)
Q Consensus        34 ~~~~~v~~~~~~~~~~~~-----~l~~~~~~~g~i~vwd~~~~~--~~~--------~~~~~~~v~~~~~s~-~~~~l~~   97 (424)
                      .|+-.++-+-  |.|+..     +||+++   ..+++|.+...+  ...        ...+..++++..|+. +.+++.+
T Consensus        94 d~~YP~tK~~--wiPd~~g~~pdlLATs~---D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igt  168 (364)
T KOG0290|consen   94 DHPYPVTKLM--WIPDSKGVYPDLLATSS---DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGT  168 (364)
T ss_pred             CCCCCccceE--ecCCccccCcchhhccc---CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEe
Confidence            4555566666  888763     455544   589999987432  211        123467999999997 7889999


Q ss_pred             ecCCCcEEEEEccCcc---eeeeeccccCCeEEEEEccCC-cEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecC
Q 014475           98 GGQSGDIYMWEVASGR---LLKKWHAHYRAVTCLVFSEDG-SFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTG  173 (424)
Q Consensus        98 ~~~dg~v~iwd~~~~~---~~~~~~~~~~~i~~~~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  173 (424)
                      .+-|-+..|||++++.   ....+-.|.++|..++|...+ +.|++.+.||.+++||++...        ....+..-..
T Consensus       169 SSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~le--------HSTIIYE~p~  240 (364)
T KOG0290|consen  169 SSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLE--------HSTIIYEDPS  240 (364)
T ss_pred             ecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccc--------cceEEecCCC
Confidence            9999999999999873   356678899999999999743 578999999999999997632        2222222223


Q ss_pred             CcCceeEEEEEEcCceeEEEEEeCC-CcEEEEecCCC-ceeeeee-cCcceeEEEECC-CCCEEEEEeCCCcEEEEEcCC
Q 014475          174 HTLRITDIVIGYGGVSATIVSASED-RTCKVWSLLKG-RLLRNIV-FPSVIDAIALDP-AEHVFYAGSRDGSIYIAALNA  249 (424)
Q Consensus       174 ~~~~i~~~~~~~~~~~~~l~~~~~d-~~v~iwd~~~~-~~~~~~~-~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~  249 (424)
                      ...+...++|++... +++++-..| ..|.+.|++.. .++..+. |.+.|+.++|.| ....+++++.|..+.+||+..
T Consensus       241 ~~~pLlRLswnkqDp-nymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q  319 (364)
T KOG0290|consen  241 PSTPLLRLSWNKQDP-NYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQ  319 (364)
T ss_pred             CCCcceeeccCcCCc-hHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEeccc
Confidence            356777888887654 777776654 56999999864 3455555 999999999999 567899999999999999987


Q ss_pred             CCCCCCCcCceeeeeecccCcCeEEEEecC--CCEEEEeCC
Q 014475          250 ESPSTSSYGMHIIGSLSDHSKAVTCLAYST--GDLLISGSE  288 (424)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~l~t~~~  288 (424)
                      ......   ..++.... -.+.|+.+.|++  ++.++.+..
T Consensus       320 ~~~~~~---~dPilay~-a~~EVNqi~Ws~~~~Dwiai~~~  356 (364)
T KOG0290|consen  320 MPRENG---EDPILAYT-AGGEVNQIQWSSSQPDWIAICFG  356 (364)
T ss_pred             ccccCC---CCchhhhh-ccceeeeeeecccCCCEEEEEec
Confidence            532110   12222232 467899999998  888888764

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.81  E-value=1.5e-19  Score=164.48  Aligned_cols=280  Identities=17%  Similarity=0.204  Sum_probs=216.2

Q ss_pred             CCCCceEEecceeecCCCccccCCCCceeEEEEECCCCceee-eecCCCCeeEEEECCCCCEEEEecCCCcEEEEEccCc
Q 014475           34 SPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEV-KSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASG  112 (424)
Q Consensus        34 ~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~  112 (424)
                      +|-++|.|..  |...|.++++++.| ..++||..++..+.. ..+|.+.|+.++.+.+..++++++.|..|++|.+..+
T Consensus       188 gH~naVyca~--fDrtg~~Iitgsdd-~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~  264 (1113)
T KOG0644|consen  188 GHRNAVYCAI--FDRTGRYIITGSDD-RLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDG  264 (1113)
T ss_pred             hhhhheeeee--eccccceEeecCcc-ceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecCCC
Confidence            5667899999  99999999999987 999999998887653 4679999999999999999999999999999999999


Q ss_pred             ceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEE
Q 014475          113 RLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATI  192 (424)
Q Consensus       113 ~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l  192 (424)
                      .++..+.+|.+.|++++|+|-.    +.+.||++++||.+-....     ....+. . ......+.++.+...+  ..+
T Consensus       265 ~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~-----y~prp~-~-~~~~~~~~s~~~~~~~--~~f  331 (1113)
T KOG0644|consen  265 APVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRI-----YVPRPL-K-FTEKDLVDSILFENNG--DRF  331 (1113)
T ss_pred             chHHHHhccccceeeeccCccc----cCCCCCceEeccccccccc-----cCCCCC-C-cccccceeeeeccccc--ccc
Confidence            9999999999999999999843    7788999999998611000     000000 0 1122455666676666  788


Q ss_pred             EEEeCCCcEEEEecCCCceeeeeecCcceeEEEECC-CCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcC
Q 014475          193 VSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDP-AEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKA  271 (424)
Q Consensus       193 ~~~~~d~~v~iwd~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~  271 (424)
                      +|++.|+.-..|.+..-..     +...+.-+..+. ...+.+++-.+-.+.+|++-++         .....+.+|...
T Consensus       332 ~Tgs~d~ea~n~e~~~l~~-----~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g---------~l~H~l~ghsd~  397 (1113)
T KOG0644|consen  332 LTGSRDGEARNHEFEQLAW-----RSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTG---------QLLHNLMGHSDE  397 (1113)
T ss_pred             ccccCCcccccchhhHhhh-----hccceEEEeccccccccceeeeeeeEeeeeecccc---------hhhhhhcccccc
Confidence            9999999988887642211     111111111111 1245566667778899999887         556778899999


Q ss_pred             eEEEEecC--CCEEEEeCCCCcEEEEeCCCCcEEEEEeccCCCeeEEEEEecCceeeeccCCCceeeccCCCCC
Q 014475          272 VTCLAYST--GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGSQ  343 (424)
Q Consensus       272 i~~~~~~~--~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~d~~i~iw~~~~~~  343 (424)
                      +..+.++|  .....+++.||...|||+-.|.+++......+.+....||+||..++....-|.++|....-++
T Consensus       398 ~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~gh~kl~d~kFSqdgts~~lsd~hgql~i~g~gqs~  471 (1113)
T KOG0644|consen  398 VYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIGHGKLVDGKFSQDGTSIALSDDHGQLYILGTGQSK  471 (1113)
T ss_pred             eeeeeecCCCcHhhhhccCCCceEeeecccCCcceeeecccceeeccccCCCCceEecCCCCCceEEeccCCCc
Confidence            99999999  5566788999999999999998888765445778888999999999999889999988775443

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.81  E-value=1.3e-18  Score=138.02  Aligned_cols=273  Identities=14%  Similarity=0.190  Sum_probs=186.8

Q ss_pred             EEeecCCCCCceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCceeeeecCCCCe
Q 014475            4 LIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSLPAEPI   83 (424)
Q Consensus         4 ~lat~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~~~~~~~v   83 (424)
                      +|.+|. .-|.|++|++.+.+....++.+.  ...|+.+.  ..|+ ..+.+-+.| +.+.+|++......  ..|.-.+
T Consensus        27 rL~sg~-~~G~V~~w~lqt~r~~~~~r~~g--~~~it~lq--~~p~-d~l~tqgRd-~~L~lw~ia~s~~i--~i~Si~~   97 (323)
T KOG0322|consen   27 RLMSGL-SVGIVKMWVLQTERDLPLIRLFG--RLFITNLQ--SIPN-DSLDTQGRD-PLLILWTIAYSAFI--SIHSIVV   97 (323)
T ss_pred             hhhccc-ccceEEEEEeecCccchhhhhhc--cceeecee--ecCC-cchhhcCCC-ceEEEEEccCcceE--EEeeeec
Confidence            578888 99999999999988887777442  24566555  5566 567788887 99999999764432  2222344


Q ss_pred             eEEEECCC-----C----CEEEEecCCC-cEEEEEccCcceeeee----ccccCCeEEEEEcc-CCc--EEEEeeCCCcE
Q 014475           84 KPIAANSH-----G----TYIAGGGQSG-DIYMWEVASGRLLKKW----HAHYRAVTCLVFSE-DGS--FLISGSEDGCV  146 (424)
Q Consensus        84 ~~~~~s~~-----~----~~l~~~~~dg-~v~iwd~~~~~~~~~~----~~~~~~i~~~~~~~-~~~--~l~s~~~dg~i  146 (424)
                      +++.|.+.     +    ..++.-++.. .+.+-|......+...    .+..+.+.|..+.. ++.  ++++|.++|.+
T Consensus        98 nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghv  177 (323)
T KOG0322|consen   98 NSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHV  177 (323)
T ss_pred             cccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeeccccccceEEEEEeccCCeE
Confidence            44444331     1    1122211111 0222222111111111    12345677777543 333  46788889999


Q ss_pred             EEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCC--cee--eeee-cCcce
Q 014475          147 RIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKG--RLL--RNIV-FPSVI  221 (424)
Q Consensus       147 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~--~~~--~~~~-~~~~i  221 (424)
                      .+||+.++....+.. ...+.......|..++.++.+.+..  ..=++|+.+..+..|++...  .+.  ..+. ....+
T Consensus       178 v~wd~S~~~~~~~~~-~~~kv~~~~ash~qpvlsldyas~~--~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv  254 (323)
T KOG0322|consen  178 VIWDLSTGDKIIQLP-QSSKVESPNASHKQPVLSLDYASSC--DRGISGGADDKLVMYSLNHSTGSLQIRKEITLKNPGV  254 (323)
T ss_pred             EEEEccCCceeeccc-cccccccchhhccCcceeeeechhh--cCCcCCCccccceeeeeccccCcccccceEEecCCCc
Confidence            999998753333222 2223345567799999999998765  55678888889999988643  221  1222 34568


Q ss_pred             eEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeC
Q 014475          222 DAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDP  297 (424)
Q Consensus       222 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~  297 (424)
                      ..+.+.||++.+++++.|++|++|+.++.         .++..++-|.+.|++++|+| .+.+|+++.|+.|.+|++
T Consensus       255 ~gvrIRpD~KIlATAGWD~RiRVyswrtl---------~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  255 SGVRIRPDGKILATAGWDHRIRVYSWRTL---------NPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL  322 (323)
T ss_pred             cceEEccCCcEEeecccCCcEEEEEeccC---------CchhhhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence            89999999999999999999999999997         67888999999999999999 699999999999999986

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.80  E-value=9.7e-18  Score=140.35  Aligned_cols=255  Identities=12%  Similarity=0.104  Sum_probs=188.1

Q ss_pred             cCCCCeeEEEECCCCCEEEEecCCCcEEEEEccCc------ceeeeec-cccCCeEEEEEccCCcEEEEeeCCCcEEEEe
Q 014475           78 LPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASG------RLLKKWH-AHYRAVTCLVFSEDGSFLISGSEDGCVRIWS  150 (424)
Q Consensus        78 ~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~------~~~~~~~-~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd  150 (424)
                      .|.+.|+++.|+.++++|++|+.|..+++|+++..      +++.... .|...|.|++|.....++.+|+.+++|...|
T Consensus        54 ~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HD  133 (609)
T KOG4227|consen   54 EHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKHD  133 (609)
T ss_pred             hhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeEeee
Confidence            47899999999999999999999999999998643      4444443 3668999999999889999999999999999


Q ss_pred             CCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCc-ee---eeeecCcceeEEEE
Q 014475          151 LLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGR-LL---RNIVFPSVIDAIAL  226 (424)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~-~~---~~~~~~~~i~~~~~  226 (424)
                      +++         .....+..-....+.|..+..+|..  +.|++.+.++.|.+||.+..+ ..   ..-..+.....+.|
T Consensus       134 iEt---------~qsi~V~~~~~~~~~VY~m~~~P~D--N~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F  202 (609)
T KOG4227|consen  134 IET---------KQSIYVANENNNRGDVYHMDQHPTD--NTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEF  202 (609)
T ss_pred             ccc---------ceeeeeecccCcccceeecccCCCC--ceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeee
Confidence            976         3333333334445689999999986  899999999999999998765 22   22235677889999


Q ss_pred             CC-CCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCCCcE-E
Q 014475          227 DP-AEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNI-V  303 (424)
Q Consensus       227 ~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~-~  303 (424)
                      +| ...+|++.+..+-+-+||.+........+..  ...+......-..+.|+| |+.|.+--....=.+||+-+.++ +
T Consensus       203 ~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~--~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V  280 (609)
T KOG4227|consen  203 HPETPALILVNSETGGPNVFDRRMQARPVYQRSM--FKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFV  280 (609)
T ss_pred             cCCCceeEEeccccCCCCceeeccccchHHhhhc--cccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeeccccee
Confidence            99 4567888888899999999987532211111  111222222335678999 88888877766677889887543 3


Q ss_pred             EEEeccC-------CCeeEEEEEecCceeeeccCCCceeeccCCCCCCCCC
Q 014475          304 RMFRLAK-------GPVNNILVVRRPLYLNLGSFSNPHTSSRRHGSQLPPP  347 (424)
Q Consensus       304 ~~~~~~~-------~~v~~l~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~  347 (424)
                      ..+. |.       ..+.+++|..|- .+++|+.+-.|.+|.+....-...
T Consensus       281 ~k~D-~N~~GY~N~~T~KS~~F~~D~-~v~tGSD~~~i~~WklP~~~ds~G  329 (609)
T KOG4227|consen  281 LKSD-HNPNGYCNIKTIKSMTFIDDY-TVATGSDHWGIHIWKLPRANDSYG  329 (609)
T ss_pred             Eecc-CCCCcceeeeeeeeeeeecce-eeeccCcccceEEEecCCCccccC
Confidence            3443 22       257778887664 499999999999999975544333

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.80  E-value=9.1e-18  Score=154.70  Aligned_cols=230  Identities=15%  Similarity=0.121  Sum_probs=164.6

Q ss_pred             eeEEEEECCCCceeeeecCCCCeeEEEECCCCCEEEEecCC---CcEEEEEccCcce--eeeeccccCCeEEEEEccCCc
Q 014475           61 GSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQS---GDIYMWEVASGRL--LKKWHAHYRAVTCLVFSEDGS  135 (424)
Q Consensus        61 g~i~vwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---g~v~iwd~~~~~~--~~~~~~~~~~i~~~~~~~~~~  135 (424)
                      ..|.+||.+.........+...+...+|||||+.|+.++.+   ..|++||+.+++.  +..+.+|   ...++|+|||+
T Consensus       184 ~~i~i~d~dg~~~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~---~~~~~wSPDG~  260 (429)
T PRK01742        184 YEVRVADYDGFNQFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGH---NGAPAFSPDGS  260 (429)
T ss_pred             EEEEEECCCCCCceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCc---cCceeECCCCC
Confidence            79999999877665555677889999999999999887643   3699999988754  3333333   34689999999


Q ss_pred             EEEEee-CCCcEEEE--eCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEE-EEeCCCcEEEEecCCC-c
Q 014475          136 FLISGS-EDGCVRIW--SLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIV-SASEDRTCKVWSLLKG-R  210 (424)
Q Consensus       136 ~l~s~~-~dg~i~iw--d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~-~~~~d~~v~iwd~~~~-~  210 (424)
                      .|+.++ .+|.+.||  |+.++            ....+..+...+....|+|++  +.|+ ++..++...+|++... .
T Consensus       261 ~La~~~~~~g~~~Iy~~d~~~~------------~~~~lt~~~~~~~~~~wSpDG--~~i~f~s~~~g~~~I~~~~~~~~  326 (429)
T PRK01742        261 RLAFASSKDGVLNIYVMGANGG------------TPSQLTSGAGNNTEPSWSPDG--QSILFTSDRSGSPQVYRMSASGG  326 (429)
T ss_pred             EEEEEEecCCcEEEEEEECCCC------------CeEeeccCCCCcCCEEECCCC--CEEEEEECCCCCceEEEEECCCC
Confidence            888764 68876666  54331            123445566678889999998  5555 4456788888887532 2


Q ss_pred             eeeeeecCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCC
Q 014475          211 LLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSED  289 (424)
Q Consensus       211 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~d  289 (424)
                      ....+.+..  ....|+|+|+.++..+.++ +.+||+.++..       ..+  ...+  ......|+| +++|+.++.+
T Consensus       327 ~~~~l~~~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~-------~~l--t~~~--~~~~~~~sPdG~~i~~~s~~  392 (429)
T PRK01742        327 GASLVGGRG--YSAQISADGKTLVMINGDN-VVKQDLTSGST-------EVL--SSTF--LDESPSISPNGIMIIYSSTQ  392 (429)
T ss_pred             CeEEecCCC--CCccCCCCCCEEEEEcCCC-EEEEECCCCCe-------EEe--cCCC--CCCCceECCCCCEEEEEEcC
Confidence            222233332  4578999999998887754 66699987641       111  1111  234577999 9999999999


Q ss_pred             CcEEEEeC--CCCcEEEEEeccCCCeeEEEEEec
Q 014475          290 GMVRVWDP--ITHNIVRMFRLAKGPVNNILVVRR  321 (424)
Q Consensus       290 g~i~iwd~--~~~~~~~~~~~~~~~v~~l~~s~~  321 (424)
                      +.+.+|++  .+|+.++.+..|.+.+...+|+|-
T Consensus       393 g~~~~l~~~~~~G~~~~~l~~~~g~~~~p~wsp~  426 (429)
T PRK01742        393 GLGKVLQLVSADGRFKARLPGSDGQVKFPAWSPY  426 (429)
T ss_pred             CCceEEEEEECCCCceEEccCCCCCCCCcccCCC
Confidence            98888875  368888999888888999999984

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.80  E-value=1.6e-17  Score=135.47  Aligned_cols=233  Identities=12%  Similarity=0.177  Sum_probs=176.3

Q ss_pred             CceEEecceeecCCCccccCCCCceeEEEEECCCCce----eeeecCCCCeeEEEECCCCCEEEEecCCCcEEEEEccCc
Q 014475           37 HGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQV----EVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASG  112 (424)
Q Consensus        37 ~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~----~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~  112 (424)
                      ..|+|.+  |++|+..+|++-.. ..|.||...+.+.    .....|...|++++|+|..+.|++++.|..-++|...++
T Consensus        11 ~pitchA--wn~drt~iAv~~~~-~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~   87 (361)
T KOG1523|consen   11 EPITCHA--WNSDRTQIAVSPNN-HEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSG   87 (361)
T ss_pred             Cceeeee--ecCCCceEEeccCC-ceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCC
Confidence            5689999  99999999999887 9999999887662    233568899999999999999999999999999998443


Q ss_pred             ---ceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCce
Q 014475          113 ---RLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVS  189 (424)
Q Consensus       113 ---~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  189 (424)
                         +....+..++...+++.|+|+++.|++|+.-..|.||-++...       .=....+.-+.+.+.|+++.|+|++  
T Consensus        88 ~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~EN-------dWWVsKhikkPirStv~sldWhpnn--  158 (361)
T KOG1523|consen   88 GTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQEN-------DWWVSKHIKKPIRSTVTSLDWHPNN--  158 (361)
T ss_pred             CeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEeccc-------ceehhhhhCCccccceeeeeccCCc--
Confidence               3445566788999999999999999999999999999875411       1111112234577889999999998  


Q ss_pred             eEEEEEeCCCcEEEEecC-----C-------------Cceeeee-ecCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCC
Q 014475          190 ATIVSASEDRTCKVWSLL-----K-------------GRLLRNI-VFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAE  250 (424)
Q Consensus       190 ~~l~~~~~d~~v~iwd~~-----~-------------~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  250 (424)
                      -++++|+.|+.++++..-     .             |++..++ ...+.+..+.|+|+|..|+-.+.|..+.+-|....
T Consensus       159 VLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p  238 (361)
T KOG1523|consen  159 VLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGP  238 (361)
T ss_pred             ceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCC
Confidence            899999999999999642     1             2233333 35678999999999999999999999999998776


Q ss_pred             CCCCCCcCceeeeeecccCcCeEEEEecCCCEEEEeCCC
Q 014475          251 SPSTSSYGMHIIGSLSDHSKAVTCLAYSTGDLLISGSED  289 (424)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~t~~~d  289 (424)
                      .+        .+.......-+..++.|-..+.++.++.|
T Consensus       239 ~~--------~v~~~~~~~lP~ls~~~ise~~vv~ag~~  269 (361)
T KOG1523|consen  239 SE--------RVQSVATAQLPLLSVSWISENSVVAAGYD  269 (361)
T ss_pred             ch--------hccchhhccCCceeeEeecCCceeecCCC
Confidence            41        22222222355556665444444444444

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.80  E-value=2.2e-17  Score=156.54  Aligned_cols=267  Identities=12%  Similarity=0.122  Sum_probs=186.3

Q ss_pred             EECCCCceeeeecCCCCeeEEEECCC-CCEEEEecCCCcEEEEEccCc-------ceeeeeccccCCeEEEEEccCCcEE
Q 014475           66 WSWSKPQVEVKSLPAEPIKPIAANSH-GTYIAGGGQSGDIYMWEVASG-------RLLKKWHAHYRAVTCLVFSEDGSFL  137 (424)
Q Consensus        66 wd~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~v~iwd~~~~-------~~~~~~~~~~~~i~~~~~~~~~~~l  137 (424)
                      |+.++..+.....|...+..++.++. +.++++|+.||+|++|+.+.-       +...++......+.++...++++.+
T Consensus      1034 W~p~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~ 1113 (1431)
T KOG1240|consen 1034 WNPRGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQF 1113 (1431)
T ss_pred             CCccceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeE
Confidence            44444434444557778888888875 499999999999999998643       2223344456789999999999999


Q ss_pred             EEeeCCCcEEEEeCCcccchhcccccccceEEeecC-CcCceeEE-EEEEcCceeEEEEEeCCCcEEEEecCCCceeeee
Q 014475          138 ISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTG-HTLRITDI-VIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNI  215 (424)
Q Consensus       138 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~-~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~  215 (424)
                      |+++.||.|++.+++......    ........... ..+.+.++ ++........++.+..-+.+..||++.......+
T Consensus      1114 Av~t~DG~v~~~~id~~~~~~----~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~l 1189 (1431)
T KOG1240|consen 1114 AVSTKDGSVRVLRIDHYNVSK----RVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRL 1189 (1431)
T ss_pred             EEEcCCCeEEEEEcccccccc----ceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhh
Confidence            999999999999996521100    00111111111 22333333 3333322237888888999999999988776666


Q ss_pred             e---cCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC--C--CEEEEeC-
Q 014475          216 V---FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST--G--DLLISGS-  287 (424)
Q Consensus       216 ~---~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~--~~l~t~~-  287 (424)
                      +   ..+.|++++.+|.+.++++|+..|.+.+||++-+.+        ....-..+..+|+.+..+|  +  ...++++ 
T Consensus      1190 k~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~--------i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~ 1261 (1431)
T KOG1240|consen 1190 KNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVP--------ILSWEHPARAPIRHVWLCPTYPQESVSVSAGS 1261 (1431)
T ss_pred             hcCccccceeEEEecCCceEEEEecCCceEEEEEeecCce--------eecccCcccCCcceEEeeccCCCCceEEEecc
Confidence            5   457899999999999999999999999999998742        2222234567888888887  3  5566555 


Q ss_pred             -CCCcEEEEeCCCCcEEEEEeccC-----------------C--CeeEEEEEecCceeeeccCCCceeeccCCCCCC
Q 014475          288 -EDGMVRVWDPITHNIVRMFRLAK-----------------G--PVNNILVVRRPLYLNLGSFSNPHTSSRRHGSQL  344 (424)
Q Consensus       288 -~dg~i~iwd~~~~~~~~~~~~~~-----------------~--~v~~l~~s~~~~~l~~~~~d~~i~iw~~~~~~~  344 (424)
                       ..+.|.+|++.+|.+...+....                 .  +.....+...+.++.+|+.|+.|+.||......
T Consensus      1262 ~~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~ 1338 (1431)
T KOG1240|consen 1262 SSNNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPEI 1338 (1431)
T ss_pred             cCCCceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCccc
Confidence             46789999999998777665331                 1  122333444557899999999999999875543

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.80  E-value=2.5e-19  Score=152.80  Aligned_cols=231  Identities=17%  Similarity=0.242  Sum_probs=195.5

Q ss_pred             CCCeeEEEECCCCCEEEEecCCCcEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhc
Q 014475           80 AEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECE  159 (424)
Q Consensus        80 ~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~  159 (424)
                      .-....+.++.+|++++.|+..|.|.-+|..++.+...+.. ...|.++.|..+.+++|++- ...++|||-.       
T Consensus       129 eFGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v-~Etv~Dv~~LHneq~~AVAQ-K~y~yvYD~~-------  199 (545)
T KOG1272|consen  129 EFGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINV-METVRDVTFLHNEQFFAVAQ-KKYVYVYDNN-------  199 (545)
T ss_pred             ccCCeeeeecCCccEEEecCCccceeeeecccceeeeeeeh-hhhhhhhhhhcchHHHHhhh-hceEEEecCC-------
Confidence            34567899999999999999999999999999999888864 45689999998888888775 4589999963       


Q ss_pred             ccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeee-cCcceeEEEECCCCCEEEEEeC
Q 014475          160 SQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYAGSR  238 (424)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~  238 (424)
                           ...++.+..| ..+..+.|-|..  .+|++++..|.++.-|+.+|+.+..+. ..+.+..++-+|-+..+-+|..
T Consensus       200 -----GtElHClk~~-~~v~rLeFLPyH--fLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~Ghs  271 (545)
T KOG1272|consen  200 -----GTELHCLKRH-IRVARLEFLPYH--FLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHS  271 (545)
T ss_pred             -----CcEEeehhhc-Cchhhhcccchh--heeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCC
Confidence                 3344555543 578889999987  789999999999999999999999887 5678889999999999999999


Q ss_pred             CCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCCCcEEEEEeccCCCeeEEE
Q 014475          239 DGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNIL  317 (424)
Q Consensus       239 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~  317 (424)
                      +|+|.+|.....         .++..+..|.++|.++++.+ |.+++|.+.|..++|||++....+.++.. ..+...++
T Consensus       272 nGtVSlWSP~sk---------ePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t-p~~a~~ls  341 (545)
T KOG1272|consen  272 NGTVSLWSPNSK---------EPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT-PHPASNLS  341 (545)
T ss_pred             CceEEecCCCCc---------chHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeec-CCCccccc
Confidence            999999999886         55667778999999999999 99999999999999999999887777765 56788999


Q ss_pred             EEecCceeeeccCCCceeeccC
Q 014475          318 VVRRPLYLNLGSFSNPHTSSRR  339 (424)
Q Consensus       318 ~s~~~~~l~~~~~d~~i~iw~~  339 (424)
                      +|..|  +++.+....+.+|.=
T Consensus       342 ~Sqkg--lLA~~~G~~v~iw~d  361 (545)
T KOG1272|consen  342 LSQKG--LLALSYGDHVQIWKD  361 (545)
T ss_pred             ccccc--ceeeecCCeeeeehh
Confidence            99776  444455667889953

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.79  E-value=9.3e-18  Score=154.64  Aligned_cols=237  Identities=14%  Similarity=0.073  Sum_probs=163.4

Q ss_pred             CCceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCCCc--eeEEEEECCCCceeeeecCCCCeeEEEEC
Q 014475           12 DTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASS--GSILYWSWSKPQVEVKSLPAEPIKPIAAN   89 (424)
Q Consensus        12 dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~--g~i~vwd~~~~~~~~~~~~~~~v~~~~~s   89 (424)
                      +..|.+||..... .+.+..+   ...+....  |+|+|+.++.++.++  ..|.+||+.+++........+....++|+
T Consensus       183 ~~~i~i~d~dg~~-~~~lt~~---~~~v~~p~--wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~~~~~~wS  256 (429)
T PRK01742        183 PYEVRVADYDGFN-QFIVNRS---SQPLMSPA--WSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGHNGAPAFS  256 (429)
T ss_pred             eEEEEEECCCCCC-ceEeccC---CCccccce--EcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCccCceeEC
Confidence            5789999986444 4445443   34566666  999999999876432  47999999887654333334455678999


Q ss_pred             CCCCEEEEec-CCCcEEEE--EccCcceeeeeccccCCeEEEEEccCCcEEEEee-CCCcEEEEeCCcccchhccccccc
Q 014475           90 SHGTYIAGGG-QSGDIYMW--EVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGS-EDGCVRIWSLLTVFEECESQRASH  165 (424)
Q Consensus        90 ~~~~~l~~~~-~dg~v~iw--d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~  165 (424)
                      |||+.|+.+. .+|.+.||  |+.+++ ...+..+...+....|+|||+.|+.++ .+|...+|++....         .
T Consensus       257 PDG~~La~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~---------~  326 (429)
T PRK01742        257 PDGSRLAFASSKDGVLNIYVMGANGGT-PSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASG---------G  326 (429)
T ss_pred             CCCCEEEEEEecCCcEEEEEEECCCCC-eEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCC---------C
Confidence            9999888764 57765555  655554 445556777788999999999877555 57888888874311         1


Q ss_pred             ceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeeecCcceeEEEECCCCCEEEEEeCCCcEEEE
Q 014475          166 LYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIA  245 (424)
Q Consensus       166 ~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~  245 (424)
                      . ...+ .+..  ....|+|++  +.++..+.++ +.+||+.+++...... ......+.|+|++++++.++.++...+|
T Consensus       327 ~-~~~l-~~~~--~~~~~SpDG--~~ia~~~~~~-i~~~Dl~~g~~~~lt~-~~~~~~~~~sPdG~~i~~~s~~g~~~~l  398 (429)
T PRK01742        327 G-ASLV-GGRG--YSAQISADG--KTLVMINGDN-VVKQDLTSGSTEVLSS-TFLDESPSISPNGIMIIYSSTQGLGKVL  398 (429)
T ss_pred             C-eEEe-cCCC--CCccCCCCC--CEEEEEcCCC-EEEEECCCCCeEEecC-CCCCCCceECCCCCEEEEEEcCCCceEE
Confidence            1 1111 2322  356789998  7787777665 5669998887543222 2234567899999999999999988888


Q ss_pred             EcCCCCCCCCCcCceeeeeecccCcCeEEEEecC
Q 014475          246 ALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST  279 (424)
Q Consensus       246 d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  279 (424)
                      ++....       ......+..|.+.+...+|+|
T Consensus       399 ~~~~~~-------G~~~~~l~~~~g~~~~p~wsp  425 (429)
T PRK01742        399 QLVSAD-------GRFKARLPGSDGQVKFPAWSP  425 (429)
T ss_pred             EEEECC-------CCceEEccCCCCCCCCcccCC
Confidence            764321       144566777888888899988

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.79  E-value=1.6e-19  Score=164.37  Aligned_cols=237  Identities=18%  Similarity=0.264  Sum_probs=194.8

Q ss_pred             cCCCCeeEEEECCCCCEEEEecCCCcEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccch
Q 014475           78 LPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEE  157 (424)
Q Consensus        78 ~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~  157 (424)
                      .|...|.|+.|...|.++++|+.|..++||..+++.++...++|.+.|+.++.+.+..++++++.|..|++|.+.+    
T Consensus       188 gH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~----  263 (1113)
T KOG0644|consen  188 GHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPD----  263 (1113)
T ss_pred             hhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecCC----
Confidence            4788899999999999999999999999999999999999999999999999999989999999999999999954    


Q ss_pred             hcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeee------eecCcceeEEEECCCCC
Q 014475          158 CESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRN------IVFPSVIDAIALDPAEH  231 (424)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~------~~~~~~i~~~~~~~~~~  231 (424)
                             ..++..+.+|++.|++++|+|-.      +.+.||++++||.+ ..+...      +.....+.++.+...+.
T Consensus       264 -------~~pvsvLrghtgavtaiafsP~~------sss~dgt~~~wd~r-~~~~~y~prp~~~~~~~~~~s~~~~~~~~  329 (1113)
T KOG0644|consen  264 -------GAPVSVLRGHTGAVTAIAFSPRA------SSSDDGTCRIWDAR-LEPRIYVPRPLKFTEKDLVDSILFENNGD  329 (1113)
T ss_pred             -------CchHHHHhccccceeeeccCccc------cCCCCCceEecccc-ccccccCCCCCCcccccceeeeecccccc
Confidence                   55677889999999999999863      67889999999987 111111      12345567778888888


Q ss_pred             EEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC--CCEEEEeCCCCcEEEEeCCCCcEEEEEecc
Q 014475          232 VFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST--GDLLISGSEDGMVRVWDPITHNIVRMFRLA  309 (424)
Q Consensus       232 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~  309 (424)
                      .+++++.|+.-..|.+....               .+...+.-+..+.  ..+.+++-.+-.+++|++.+|.+++.+.+|
T Consensus       330 ~f~Tgs~d~ea~n~e~~~l~---------------~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~gh  394 (1113)
T KOG0644|consen  330 RFLTGSRDGEARNHEFEQLA---------------WRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGH  394 (1113)
T ss_pred             ccccccCCcccccchhhHhh---------------hhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhccc
Confidence            89999999988887765432               2223333333332  467777888889999999999999999999


Q ss_pred             CCCeeEEEEEecCcee-eeccCCCceeeccCCCCCCCCC
Q 014475          310 KGPVNNILVVRRPLYL-NLGSFSNPHTSSRRHGSQLPPP  347 (424)
Q Consensus       310 ~~~v~~l~~s~~~~~l-~~~~~d~~i~iw~~~~~~~~~~  347 (424)
                      ..++..+.++|-...+ .+++.||...|||+-.+.+...
T Consensus       395 sd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~  433 (1113)
T KOG0644|consen  395 SDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKH  433 (1113)
T ss_pred             ccceeeeeecCCCcHhhhhccCCCceEeeecccCCccee
Confidence            9999999999966555 6899999999999986655443

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.79  E-value=8.5e-18  Score=146.11  Aligned_cols=208  Identities=18%  Similarity=0.228  Sum_probs=162.2

Q ss_pred             CCccccCCCCceeEEEEECCCCceeeeecCCCCeeEEEECCCCCEEEEecCCCcEEEEEccCcceeeeeccccCCeEEEE
Q 014475           50 SQLREQPSASSGSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLV  129 (424)
Q Consensus        50 ~~~l~~~~~~~g~i~vwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~  129 (424)
                      ...++.++.| |.+.+-+-...-......|.+.+.+-.|+|||.-|+++++||.|++|. ++|-+..++-....+|.|++
T Consensus        75 ~d~~~i~s~D-Gkf~il~k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~c~~  152 (737)
T KOG1524|consen   75 SDTLLICSND-GRFVILNKSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWS-RSGMLRSTVVQNEESIRCAR  152 (737)
T ss_pred             cceEEEEcCC-ceEEEecccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEe-ccchHHHHHhhcCceeEEEE
Confidence            3456677776 888888755544445567899999999999999999999999999998 67777777767788999999


Q ss_pred             EccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCC
Q 014475          130 FSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKG  209 (424)
Q Consensus       130 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~  209 (424)
                      |.|+.+-++-+.. +.+.|=.+.           ....+..++.|.+-|.++.|++..  +.+++|++|-..++||-...
T Consensus       153 W~p~S~~vl~c~g-~h~~IKpL~-----------~n~k~i~WkAHDGiiL~~~W~~~s--~lI~sgGED~kfKvWD~~G~  218 (737)
T KOG1524|consen  153 WAPNSNSIVFCQG-GHISIKPLA-----------ANSKIIRWRAHDGLVLSLSWSTQS--NIIASGGEDFRFKIWDAQGA  218 (737)
T ss_pred             ECCCCCceEEecC-CeEEEeecc-----------cccceeEEeccCcEEEEeecCccc--cceeecCCceeEEeecccCc
Confidence            9998776665543 456665552           233456788999999999999988  89999999999999997655


Q ss_pred             ceeeeeecCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCC
Q 014475          210 RLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSE  288 (424)
Q Consensus       210 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~  288 (424)
                      .+...-.|..+|++++|.|+ ..+++++.+ ++++                    -....+.|..++|++ |..++.|..
T Consensus       219 ~Lf~S~~~ey~ITSva~npd-~~~~v~S~n-t~R~--------------------~~p~~GSifnlsWS~DGTQ~a~gt~  276 (737)
T KOG1524|consen  219 NLFTSAAEEYAITSVAFNPE-KDYLLWSYN-TARF--------------------SSPRVGSIFNLSWSADGTQATCGTS  276 (737)
T ss_pred             ccccCChhccceeeeeeccc-cceeeeeee-eeee--------------------cCCCccceEEEEEcCCCceeecccc
Confidence            54455558999999999999 666666532 3331                    112347799999999 999999998


Q ss_pred             CCcEEEE
Q 014475          289 DGMVRVW  295 (424)
Q Consensus       289 dg~i~iw  295 (424)
                      .|.+.+=
T Consensus       277 ~G~v~~A  283 (737)
T KOG1524|consen  277 TGQLIVA  283 (737)
T ss_pred             CceEEEe
Confidence            8887653

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.78  E-value=3.3e-18  Score=144.63  Aligned_cols=198  Identities=21%  Similarity=0.308  Sum_probs=156.3

Q ss_pred             EEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEe
Q 014475          126 TCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWS  205 (424)
Q Consensus       126 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd  205 (424)
                      .+++|+++|..+++++.||++|+|+..+           ...+.....|...|.++.|+|++  +.|++.+.| ..++|+
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~~Ps-----------~~t~l~e~~~~~eV~DL~FS~dg--k~lasig~d-~~~VW~  213 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWEWPS-----------MLTILEEIAHHAEVKDLDFSPDG--KFLASIGAD-SARVWS  213 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEecCc-----------chhhhhhHhhcCccccceeCCCC--cEEEEecCC-ceEEEE
Confidence            7899999999999999999999999733           33455667899999999999999  899999999 899999


Q ss_pred             cCCCceeeeee---cCcceeEEEECCCC---CE--EEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEe
Q 014475          206 LLKGRLLRNIV---FPSVIDAIALDPAE---HV--FYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAY  277 (424)
Q Consensus       206 ~~~~~~~~~~~---~~~~i~~~~~~~~~---~~--l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  277 (424)
                      .+++..+....   .+.....+.|+.++   .+  ++.....+.|+.|++.......    .-...........|++++.
T Consensus       214 ~~~g~~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~----~l~~~~~~~~~~siSsl~V  289 (398)
T KOG0771|consen  214 VNTGAALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSN----FLRLRKKIKRFKSISSLAV  289 (398)
T ss_pred             eccCchhhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeecccc----ccchhhhhhccCcceeEEE
Confidence            99996666554   34456677787766   22  3333455677777776543210    0112222233467999999


Q ss_pred             cC-CCEEEEeCCCCcEEEEeCCCCcEEEEEe-ccCCCeeEEEEEecCceeeeccCCCceeeccCCC
Q 014475          278 ST-GDLLISGSEDGMVRVWDPITHNIVRMFR-LAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHG  341 (424)
Q Consensus       278 ~~-~~~l~t~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~l~~s~~~~~l~~~~~d~~i~iw~~~~  341 (424)
                      ++ |++++.|+.||.|.|++..+-+.++.++ .|...|+.+.|+||.+++++.+.|....+-.+..
T Consensus       290 S~dGkf~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v  355 (398)
T KOG0771|consen  290 SDDGKFLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV  355 (398)
T ss_pred             cCCCcEEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence            99 9999999999999999999988877654 6889999999999999999999999988888764

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.78  E-value=1.1e-17  Score=141.43  Aligned_cols=198  Identities=23%  Similarity=0.242  Sum_probs=149.3

Q ss_pred             eEEEECCCCCEEEEecCCCcEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhccccc
Q 014475           84 KPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRA  163 (424)
Q Consensus        84 ~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~  163 (424)
                      .+++|+++|..+++|+.||++|||+..+...+.....|.+.|.++.|+||+++|++-+.| ..+||+.+++........ 
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~-  225 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTP-  225 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCC-
Confidence            789999999999999999999999988888888888899999999999999999999999 899999988632211110 


Q ss_pred             ccceEEeecCCcCceeEEEEEEcCce--eEEEE-EeCCCcEEEEecCCCc------eeeeeecCcceeEEEECCCCCEEE
Q 014475          164 SHLYLHSFTGHTLRITDIVIGYGGVS--ATIVS-ASEDRTCKVWSLLKGR------LLRNIVFPSVIDAIALDPAEHVFY  234 (424)
Q Consensus       164 ~~~~~~~~~~~~~~i~~~~~~~~~~~--~~l~~-~~~d~~v~iwd~~~~~------~~~~~~~~~~i~~~~~~~~~~~l~  234 (424)
                              ....-....+.|+.++.+  -++++ ....+.|+.||+....      ..+.+.....|.+++++++|++++
T Consensus       226 --------~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~A  297 (398)
T KOG0771|consen  226 --------FSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLA  297 (398)
T ss_pred             --------cccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEE
Confidence                    112223444556554311  12332 2334567776664322      122222456899999999999999


Q ss_pred             EEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCC
Q 014475          235 AGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPIT  299 (424)
Q Consensus       235 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~  299 (424)
                      .|+.||.|.+++...-+        .....-+.|...|+.+.|+| .+++++.+.|....+..+.-
T Consensus       298 lGT~dGsVai~~~~~lq--------~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v  355 (398)
T KOG0771|consen  298 LGTMDGSVAIYDAKSLQ--------RLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV  355 (398)
T ss_pred             EeccCCcEEEEEeceee--------eeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence            99999999999998853        33344457999999999999 88999999898888877653

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.78  E-value=2.1e-16  Score=129.08  Aligned_cols=236  Identities=15%  Similarity=0.253  Sum_probs=168.4

Q ss_pred             CeeEEEECCCCCEEEEecCCCcEEEEEccCcceeeeeccccC--CeEEEEEccCCcEEE-EeeCC------CcEEEEeCC
Q 014475           82 PIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYR--AVTCLVFSEDGSFLI-SGSED------GCVRIWSLL  152 (424)
Q Consensus        82 ~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~--~i~~~~~~~~~~~l~-s~~~d------g~i~iwd~~  152 (424)
                      ...+++|+.|...+++|..+| .+||+.+.-+.....+.+.+  .+..+-|-  .++|+ +|+.+      ..|.|||= 
T Consensus         7 ~~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r~~~~~G~~~veMLfR--~N~laLVGGg~~pky~pNkviIWDD-   82 (346)
T KOG2111|consen    7 KTLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASRQFIDGGFKIVEMLFR--SNYLALVGGGSRPKYPPNKVIIWDD-   82 (346)
T ss_pred             ceeEEEEccCCceEEEEecCc-eEEEecCchhhhhhhccccCchhhhhHhhh--hceEEEecCCCCCCCCCceEEEEec-
Confidence            445699999999999998877 89999876443332222222  23333333  33443 34332      46999994 


Q ss_pred             cccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecC-CCceeeeee---cCcceeEEEECC
Q 014475          153 TVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLL-KGRLLRNIV---FPSVIDAIALDP  228 (424)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~-~~~~~~~~~---~~~~i~~~~~~~  228 (424)
                                .+..++.++. ...+|.++.+.++    .+++.- .+.|.+|... +.+.++.+.   .+....+++-..
T Consensus        83 ----------~k~~~i~el~-f~~~I~~V~l~r~----riVvvl-~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~  146 (346)
T KOG2111|consen   83 ----------LKERCIIELS-FNSEIKAVKLRRD----RIVVVL-ENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTS  146 (346)
T ss_pred             ----------ccCcEEEEEE-eccceeeEEEcCC----eEEEEe-cCeEEEEEcCCChhheeeeecccCCCceEeecCCC
Confidence                      3344444443 5678999999875    344443 5789999987 556666665   233433333333


Q ss_pred             CCCEEEE-EeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCCCc-EEEEeCCCCcEEEE
Q 014475          229 AEHVFYA-GSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGM-VRVWDPITHNIVRM  305 (424)
Q Consensus       229 ~~~~l~~-~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~-i~iwd~~~~~~~~~  305 (424)
                      +..+|+. |..-|.|.+-|+.....       .......+|...|.|++.+. |..+||+|..|+ |||||..+|+++..
T Consensus       147 ~k~~LafPg~k~GqvQi~dL~~~~~-------~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E  219 (346)
T KOG2111|consen  147 NKSLLAFPGFKTGQVQIVDLASTKP-------NAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQE  219 (346)
T ss_pred             CceEEEcCCCccceEEEEEhhhcCc-------CCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeee
Confidence            4444544 45678999999988642       13467789999999999998 999999999998 89999999999999


Q ss_pred             Eecc--CCCeeEEEEEecCceeeeccCCCceeeccCCCCCC
Q 014475          306 FRLA--KGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGSQL  344 (424)
Q Consensus       306 ~~~~--~~~v~~l~~s~~~~~l~~~~~d~~i~iw~~~~~~~  344 (424)
                      ++.-  ...|.+++|||+..+|+++|+-|++.|+.++....
T Consensus       220 ~RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~~~  260 (346)
T KOG2111|consen  220 LRRGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRDTEN  260 (346)
T ss_pred             eecCCchheEEEEEeCCCccEEEEEcCCCeEEEEEeecCCC
Confidence            8843  35899999999999999999999999999986543

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.76  E-value=6.7e-17  Score=132.45  Aligned_cols=282  Identities=13%  Similarity=0.111  Sum_probs=193.3

Q ss_pred             eecCCCccccCCCCceeEEEEECCCCceeeeecCCCCeeEEEECCCCCEEEEe-cCCCcEEEEEccCcceeeeeccccCC
Q 014475           46 FLASSQLREQPSASSGSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGG-GQSGDIYMWEVASGRLLKKWHAHYRA  124 (424)
Q Consensus        46 ~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg~v~iwd~~~~~~~~~~~~~~~~  124 (424)
                      |+|+|+++|++..  -.+.+=|..+-+.......-+.|.-+.|..|..+++++ ..++.|.+|++...+-...+.....+
T Consensus        16 fSp~g~yiAs~~~--yrlviRd~~tlq~~qlf~cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~ag   93 (447)
T KOG4497|consen   16 FSPCGNYIASLSR--YRLVIRDSETLQLHQLFLCLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQAG   93 (447)
T ss_pred             ECCCCCeeeeeee--eEEEEeccchhhHHHHHHHHHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccCCCc
Confidence            9999999999887  58888888877766555556788889999887776655 66889999999998888888888899


Q ss_pred             eEEEEEccCCcEEE-EeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeC------
Q 014475          125 VTCLVFSEDGSFLI-SGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASE------  197 (424)
Q Consensus       125 i~~~~~~~~~~~l~-s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~------  197 (424)
                      +..++|+|+|+.++ +...+-+|.+|.+.+..         .   ..++-.+..+..++|++++  ++.+..+.      
T Consensus        94 ls~~~WSPdgrhiL~tseF~lriTVWSL~t~~---------~---~~~~~pK~~~kg~~f~~dg--~f~ai~sRrDCkdy  159 (447)
T KOG4497|consen   94 LSSISWSPDGRHILLTSEFDLRITVWSLNTQK---------G---YLLPHPKTNVKGYAFHPDG--QFCAILSRRDCKDY  159 (447)
T ss_pred             ceeeeECCCcceEeeeecceeEEEEEEeccce---------e---EEecccccCceeEEECCCC--ceeeeeecccHHHH
Confidence            99999999996655 55668899999997621         1   1112222334556666666  44444332      


Q ss_pred             ------------------------------CCcEEEEecCCCceeeeeecCcceeEEEECCCCCEEEEEeCCCcEEEEEc
Q 014475          198 ------------------------------DRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAAL  247 (424)
Q Consensus       198 ------------------------------d~~v~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~  247 (424)
                                                    +..+.+||---.-.+......-.+..++|+|.++++++|+.|+.+++.+-
T Consensus       160 v~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe~~lG~k~v~wsP~~qflavGsyD~~lrvlnh  239 (447)
T KOG4497|consen  160 VQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNH  239 (447)
T ss_pred             HHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheeeeeeeccceeEEEeccccceEEeeccchhhhhhce
Confidence                                          22344555322222223334467889999999999999999999887653


Q ss_pred             CCCCC-----------------------------------------------CCCCc----------CceeeeeecccCc
Q 014475          248 NAESP-----------------------------------------------STSSY----------GMHIIGSLSDHSK  270 (424)
Q Consensus       248 ~~~~~-----------------------------------------------~~~~~----------~~~~~~~~~~~~~  270 (424)
                      -+-++                                               ....+          ..++.........
T Consensus       240 ~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~  319 (447)
T KOG4497|consen  240 FTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKC  319 (447)
T ss_pred             eeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCccc
Confidence            22111                                               00000          0001111222334


Q ss_pred             CeEEEEecC-CCEEEEeCC--CCcEEEEeCCCCcEEEEEeccCCCeeEEEEEecCceeeeccCCCceeeccCCCCCC
Q 014475          271 AVTCLAYST-GDLLISGSE--DGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGSQL  344 (424)
Q Consensus       271 ~i~~~~~~~-~~~l~t~~~--dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~d~~i~iw~~~~~~~  344 (424)
                      .+..++|++ ..+++|-.+  -+.+-+||++..+.-..+. ...+|....|+|....|+.+.....+++|...+...
T Consensus       320 g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLi-Qk~piraf~WdP~~prL~vctg~srLY~W~psg~~~  395 (447)
T KOG4497|consen  320 GAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLI-QKHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSGPRV  395 (447)
T ss_pred             ccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhhh-hccceeEEEeCCCCceEEEEcCCceEEEEcCCCceE
Confidence            567799999 555555432  3569999999766555443 568999999999998898888888899999887544

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.76  E-value=1e-16  Score=140.65  Aligned_cols=299  Identities=11%  Similarity=0.109  Sum_probs=212.9

Q ss_pred             CceEEEeCCCCceEEEeeC---------------------CCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCC
Q 014475           13 TGIGCWDLESGAEQLRYKS---------------------CASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKP   71 (424)
Q Consensus        13 g~i~vwd~~~~~~~~~~~~---------------------~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~   71 (424)
                      ..|+||++..|+.+..+-.                     --.++..-+.+.  .+|||+++.+.|.---.|++||+...
T Consensus         7 NdVkiYnvS~~kslP~Wls~r~kR~lkkd~~~~~rieLiQdfe~p~ast~ik--~s~DGqY~lAtG~YKP~ikvydlanL   84 (703)
T KOG2321|consen    7 NDVKIYNVSAGKSLPDWLSDRRKRQLKKDVDYRQRIELIQDFEMPTASTRIK--VSPDGQYLLATGTYKPQIKVYDLANL   84 (703)
T ss_pred             CceEEEEeecCCCchhhhhhHHHHHHhhchHHHHHHHHHHhcCCccccceeE--ecCCCcEEEEecccCCceEEEEcccc
Confidence            4689999887766543321                     012333344555  99999998888766589999999887


Q ss_pred             ceeeeecCC-CCeeEEEECCCCCEEEEecCCCcEEEEEccCcceeeeeccccCCeEEEEEcc-CCcEEEEeeCCCcEEEE
Q 014475           72 QVEVKSLPA-EPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSE-DGSFLISGSEDGCVRIW  149 (424)
Q Consensus        72 ~~~~~~~~~-~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~s~~~dg~i~iw  149 (424)
                      .+.+..... +.|.-.-.+.|-..++.-..|.+|.+..- -|.. ..++ -...-..++++. +..+++.| ....|+-+
T Consensus        85 SLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak-~G~h-y~~R-IP~~GRDm~y~~~scDly~~g-sg~evYRl  160 (703)
T KOG2321|consen   85 SLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAK-YGRH-YRTR-IPKFGRDMKYHKPSCDLYLVG-SGSEVYRL  160 (703)
T ss_pred             eeeeeecccccceeEEEeccchhhheEeecCceeeehhh-cCee-eeee-cCcCCccccccCCCccEEEee-cCcceEEE
Confidence            776655544 45555555555555555556777766432 2221 1111 112234566653 33444444 44578888


Q ss_pred             eCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeeecCc----------
Q 014475          150 SLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPS----------  219 (424)
Q Consensus       150 d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~----------  219 (424)
                      +++.           ...+..+....+.++++.+++..  .+|++|+.+|.|..||.+....+..+....          
T Consensus       161 NLEq-----------GrfL~P~~~~~~~lN~v~in~~h--gLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~  227 (703)
T KOG2321|consen  161 NLEQ-----------GRFLNPFETDSGELNVVSINEEH--GLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDA  227 (703)
T ss_pred             Eccc-----------cccccccccccccceeeeecCcc--ceEEecccCceEEEecchhhhhheeeecccccCCCccccc
Confidence            8854           55666677777899999999887  899999999999999999887777665322          


Q ss_pred             --ceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC---CCEEEEeCCCCcEEE
Q 014475          220 --VIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST---GDLLISGSEDGMVRV  294 (424)
Q Consensus       220 --~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~~l~t~~~dg~i~i  294 (424)
                        .|+++.|+.+|-.+++|+.+|.+.|||++...        ..+..-.+..-+|..+.|.+   .+.+++. ....++|
T Consensus       228 ~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~--------pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~-Dk~~~ki  298 (703)
T KOG2321|consen  228 APSVTALKFRDDGLHVAVGTSTGSVLIYDLRASK--------PLLVKDHGYELPIKKLDWQDTDQQNKVVSM-DKRILKI  298 (703)
T ss_pred             cCcceEEEecCCceeEEeeccCCcEEEEEcccCC--------ceeecccCCccceeeecccccCCCceEEec-chHHhhh
Confidence              39999999999999999999999999999975        33333444566889999977   3455555 4678999


Q ss_pred             EeCCCCcEEEEEeccCCCeeEEEEEecCceeeeccCCCceeeccCC
Q 014475          295 WDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRH  340 (424)
Q Consensus       295 wd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~d~~i~iw~~~  340 (424)
                      ||-.+|+....+.. ...++.+++-|++-+++++-.++.+..+-++
T Consensus       299 Wd~~~Gk~~asiEp-t~~lND~C~~p~sGm~f~Ane~~~m~~yyiP  343 (703)
T KOG2321|consen  299 WDECTGKPMASIEP-TSDLNDFCFVPGSGMFFTANESSKMHTYYIP  343 (703)
T ss_pred             cccccCCceeeccc-cCCcCceeeecCCceEEEecCCCcceeEEcc
Confidence            99999999998874 4569999999999999999888887776665

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.75  E-value=1.2e-15  Score=133.69  Aligned_cols=319  Identities=11%  Similarity=0.124  Sum_probs=204.7

Q ss_pred             EEeecCCCCCceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCceeeeecCCCCe
Q 014475            4 LIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSLPAEPI   83 (424)
Q Consensus         4 ~lat~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~~~~~~~v   83 (424)
                      .++.-+  .-.+.+|+...-....+...+..........+  ++++|++++.+..  +.+.|++.......+..... .+
T Consensus         4 ~~aVRs--Se~~~l~~~~~~~~~~~~f~~~~~~~~~~v~~--~S~~G~lfA~~~~--~~v~i~~~~~~~~~lt~~~~-~~   76 (566)
T KOG2315|consen    4 VYAVRS--SEGFYLFNGPGSKDAVTVFEQNKTSRPCNVFA--YSNNGRLFAYSDN--QVVKVFEIATLKVVLCVELK-KT   76 (566)
T ss_pred             eEEEEc--cceeEEeccCCccccccccccCCCCCcceeEE--EcCCCcEEEEEcC--CeEEEEEccCCcEEEEeccc-ee
Confidence            344444  34588999765333333323321222333444  8999999988876  69999999888755555555 89


Q ss_pred             eEEEECCCCCEEEEe-----cC-----CCcEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCc
Q 014475           84 KPIAANSHGTYIAGG-----GQ-----SGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLT  153 (424)
Q Consensus        84 ~~~~~s~~~~~l~~~-----~~-----dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~  153 (424)
                      .++.|+|-+.+|.+=     ..     .-.+.+|+++++.....+......-++..|++|..+.+-- ..+.+.+|++.+
T Consensus        77 ~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~vet~~~~s~~q~k~Q~~W~~qfs~dEsl~arl-v~nev~f~~~~~  155 (566)
T KOG2315|consen   77 YDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVYNVETGVQRSQIQKKMQNGWVPQFSIDESLAARL-VSNEVQFYDLGS  155 (566)
T ss_pred             eeeeecccccccccccccccccCCCCCCCceeeeeeccceehhheehhhhcCcccccccchhhhhhh-hcceEEEEecCC
Confidence            999999999998762     11     2348899999966655554433333689999887654322 245788888755


Q ss_pred             ccchhccc------------ccccceE--------------Eeec----C-C---------cCceeEEEEEEcCceeEEE
Q 014475          154 VFEECESQ------------RASHLYL--------------HSFT----G-H---------TLRITDIVIGYGGVSATIV  193 (424)
Q Consensus       154 ~~~~~~~~------------~~~~~~~--------------~~~~----~-~---------~~~i~~~~~~~~~~~~~l~  193 (424)
                      ........            ......+              +.+.    + |         ...-..+.|++.+.+-+++
T Consensus       156 f~~~~~kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvL  235 (566)
T KOG2315|consen  156 FKTIQHKLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVL  235 (566)
T ss_pred             ccceeeeeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEE
Confidence            21110000            0000000              0000    0 0         0001123444444322222


Q ss_pred             EEe-C---------CCcEEEEecCCCceeeeeecCcceeEEEECCCCCEEEE--EeCCCcEEEEEcCCCCCCCCCcCcee
Q 014475          194 SAS-E---------DRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYA--GSRDGSIYIAALNAESPSTSSYGMHI  261 (424)
Q Consensus       194 ~~~-~---------d~~v~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~--~~~dg~i~i~d~~~~~~~~~~~~~~~  261 (424)
                      +.+ -         ..++++.++........+...++|.+++|+|+++-+++  |-+-.++.+||++..          +
T Consensus       236 astdVDktn~SYYGEq~Lyll~t~g~s~~V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~----------~  305 (566)
T KOG2315|consen  236 ASTDVDKTNASYYGEQTLYLLATQGESVSVPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGK----------P  305 (566)
T ss_pred             EEEeecCCCccccccceEEEEEecCceEEEecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCCCC----------E
Confidence            221 1         23566677664455555556789999999999987765  557789999999873          3


Q ss_pred             eeeecccCcCeEEEEecC-CCEEEEeCC---CCcEEEEeCCCCcEEEEEeccCCCeeEEEEEecCceeeecc------CC
Q 014475          262 IGSLSDHSKAVTCLAYST-GDLLISGSE---DGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGS------FS  331 (424)
Q Consensus       262 ~~~~~~~~~~i~~~~~~~-~~~l~t~~~---dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~------~d  331 (424)
                      +..+  ..++=+++-|+| |++++.+|.   -|.|-|||+.+.+++..+.....  +-+.|+|||+++++++      -|
T Consensus       306 v~df--~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~t--t~~eW~PdGe~flTATTaPRlrvd  381 (566)
T KOG2315|consen  306 VFDF--PEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAANT--TVFEWSPDGEYFLTATTAPRLRVD  381 (566)
T ss_pred             eEeC--CCCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhccccccCCc--eEEEEcCCCcEEEEEeccccEEec
Confidence            4444  457778899999 999998875   47899999999999998876443  6679999999998876      46


Q ss_pred             CceeeccCCCCCC
Q 014475          332 NPHTSSRRHGSQL  344 (424)
Q Consensus       332 ~~i~iw~~~~~~~  344 (424)
                      +.++||+..+..+
T Consensus       382 Ng~KiwhytG~~l  394 (566)
T KOG2315|consen  382 NGIKIWHYTGSLL  394 (566)
T ss_pred             CCeEEEEecCcee
Confidence            7899999987765

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.75  E-value=1.9e-17  Score=144.35  Aligned_cols=223  Identities=22%  Similarity=0.273  Sum_probs=165.0

Q ss_pred             eeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceE-EeecCCcCceeEEEEEEcCceeEE
Q 014475          114 LLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYL-HSFTGHTLRITDIVIGYGGVSATI  192 (424)
Q Consensus       114 ~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~~l  192 (424)
                      ..+.+.+|.+.|+|+.|+.+|.+|++|+.|-.+.|||.-.           .+++ ..-.+|...|.++.|-|......+
T Consensus        42 lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~-----------~KllhsI~TgHtaNIFsvKFvP~tnnriv  110 (758)
T KOG1310|consen   42 LEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFE-----------YKLLHSISTGHTANIFSVKFVPYTNNRIV  110 (758)
T ss_pred             hhhhhccccceecceeecCCCCEEeecCCcceEEeecchh-----------cceeeeeecccccceeEEeeeccCCCeEE
Confidence            4467889999999999999999999999999999999842           3333 344689999999999998877999


Q ss_pred             EEEeCCCcEEEEecCCC----------ceeeeee-cCcceeEEEECCCC-CEEEEEeCCCcEEEEEcCCCCCCCCCc-Cc
Q 014475          193 VSASEDRTCKVWSLLKG----------RLLRNIV-FPSVIDAIALDPAE-HVFYAGSRDGSIYIAALNAESPSTSSY-GM  259 (424)
Q Consensus       193 ~~~~~d~~v~iwd~~~~----------~~~~~~~-~~~~i~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~  259 (424)
                      ++|..|..|+++|+...          +....+. |...|..++..|++ ..+.+++.||+|+.+|++......... ..
T Consensus       111 ~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~  190 (758)
T KOG1310|consen  111 LSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCP  190 (758)
T ss_pred             EeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCcccccc
Confidence            99999999999999742          1222222 67788899999987 889999999999999999854322211 01


Q ss_pred             eeeeeecccCcCeEEEEecC--CCEEEEeCCCCcEEEEeCCC--------Cc----------EEEEEe-ccC----C---
Q 014475          260 HIIGSLSDHSKAVTCLAYST--GDLLISGSEDGMVRVWDPIT--------HN----------IVRMFR-LAK----G---  311 (424)
Q Consensus       260 ~~~~~~~~~~~~i~~~~~~~--~~~l~t~~~dg~i~iwd~~~--------~~----------~~~~~~-~~~----~---  311 (424)
                      ..+..+...--...++.++|  ..+|+.|+.|-..++||.+.        +.          ++..+. +|.    +   
T Consensus       191 ~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~  270 (758)
T KOG1310|consen  191 SILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLD  270 (758)
T ss_pred             HHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccc
Confidence            11111112224467888999  78999999999999999431        11          222222 222    1   


Q ss_pred             ----CeeEEEEEecCceeeeccCCCceeeccCCCCCCCCC
Q 014475          312 ----PVNNILVVRRPLYLNLGSFSNPHTSSRRHGSQLPPP  347 (424)
Q Consensus       312 ----~v~~l~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~  347 (424)
                          .++-+.|+|+|.-|++.-....|+++++...+.+.+
T Consensus       271 ~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~~~  310 (758)
T KOG1310|consen  271 RYITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSPTP  310 (758)
T ss_pred             cceeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCCcee
Confidence                256788999998888777777899999987765433

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.75  E-value=2e-17  Score=141.38  Aligned_cols=267  Identities=14%  Similarity=0.166  Sum_probs=207.9

Q ss_pred             EeecCCCCCceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCceeeeecCCCCee
Q 014475            5 IASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSLPAEPIK   84 (424)
Q Consensus         5 lat~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~~~~~~~v~   84 (424)
                      |+.|+ ..|.|-.+|..++++..++..-    ..|..+.  |..+.+++|++-.  ..+.|||-..-+...... ..+|.
T Consensus       144 lllgG-rKGHlAa~Dw~t~~L~~Ei~v~----Etv~Dv~--~LHneq~~AVAQK--~y~yvYD~~GtElHClk~-~~~v~  213 (545)
T KOG1272|consen  144 LLLGG-RKGHLAAFDWVTKKLHFEINVM----ETVRDVT--FLHNEQFFAVAQK--KYVYVYDNNGTELHCLKR-HIRVA  213 (545)
T ss_pred             EEecC-Cccceeeeecccceeeeeeehh----hhhhhhh--hhcchHHHHhhhh--ceEEEecCCCcEEeehhh-cCchh
Confidence            55566 6899999999999999888643    3455666  9999999999987  699999977666544433 46889


Q ss_pred             EEEECCCCCEEEEecCCCcEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccc
Q 014475           85 PIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRAS  164 (424)
Q Consensus        85 ~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~  164 (424)
                      .+.|-|..-+|++++..|.++.-|+.+|+.+..+....+.+..++-+|-+..+-+|...|+|.+|....           
T Consensus       214 rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~s-----------  282 (545)
T KOG1272|consen  214 RLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNS-----------  282 (545)
T ss_pred             hhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCC-----------
Confidence            999999999999999999999999999999999998889999999999888899999999999999844           


Q ss_pred             cceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeeecCcceeEEEECCCCCEEEEEeCCCcEEE
Q 014475          165 HLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYI  244 (424)
Q Consensus       165 ~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i  244 (424)
                      ..++..+..|.++|.++++.+.|  .+++|++.|..++|||++....+..+..+.+...+++|..|  +++.+....+.+
T Consensus       283 kePLvKiLcH~g~V~siAv~~~G--~YMaTtG~Dr~~kIWDlR~~~ql~t~~tp~~a~~ls~Sqkg--lLA~~~G~~v~i  358 (545)
T KOG1272|consen  283 KEPLVKILCHRGPVSSIAVDRGG--RYMATTGLDRKVKIWDLRNFYQLHTYRTPHPASNLSLSQKG--LLALSYGDHVQI  358 (545)
T ss_pred             cchHHHHHhcCCCcceEEECCCC--cEEeecccccceeEeeeccccccceeecCCCcccccccccc--ceeeecCCeeee
Confidence            44566678899999999999999  99999999999999999998877777777888888888666  344445557888


Q ss_pred             EEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCCC
Q 014475          245 AALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITH  300 (424)
Q Consensus       245 ~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~  300 (424)
                      |.=........    ..........++|..+.|.| .+.|-.|...|.-.|.=.-.|
T Consensus       359 w~d~~~~s~~~----~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G~tsilVPGsG  411 (545)
T KOG1272|consen  359 WKDALKGSGHG----ETPYMNHRCGGPVEDLRFCPYEDVLGIGHAGGITSILVPGSG  411 (545)
T ss_pred             ehhhhcCCCCC----CcchhhhccCcccccceeccHHHeeeccccCCceeEeccCCC
Confidence            85332211000    00001111235899999999 887777776665444433333

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.74  E-value=3.3e-15  Score=124.12  Aligned_cols=283  Identities=16%  Similarity=0.157  Sum_probs=187.4

Q ss_pred             eEEecceeecCCCccccCCCCceeEEEEECCCCcee-eeecCCCCeeEEEECCC-CCEEEEecCCCcEEEEEccCc----
Q 014475           39 LACVGQRFLASSQLREQPSASSGSILYWSWSKPQVE-VKSLPAEPIKPIAANSH-GTYIAGGGQSGDIYMWEVASG----  112 (424)
Q Consensus        39 v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~-~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~v~iwd~~~~----  112 (424)
                      +..++  |++--..+++++.| ..|++|+-...... .+......|+|++|-|. ++-|++|+..| |.+|.....    
T Consensus       101 lr~~a--WhqH~~~fava~nd-dvVriy~ksst~pt~Lks~sQrnvtclawRPlsaselavgCr~g-IciW~~s~tln~~  176 (445)
T KOG2139|consen  101 LRGVA--WHQHIIAFAVATND-DVVRIYDKSSTCPTKLKSVSQRNVTCLAWRPLSASELAVGCRAG-ICIWSDSRTLNAN  176 (445)
T ss_pred             eeeEe--echhhhhhhhhccC-cEEEEeccCCCCCceecchhhcceeEEEeccCCcceeeeeecce-eEEEEcCcccccc
Confidence            44556  88877778888887 99999998764433 33445779999999994 56788888765 999987432    


Q ss_pred             ce----------eeeeccccCCeEEEEEccCCcEEEEeeC-CCcEEEEeCCcccchhcccccccceEEeecCCcCceeEE
Q 014475          113 RL----------LKKWHAHYRAVTCLVFSEDGSFLISGSE-DGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDI  181 (424)
Q Consensus       113 ~~----------~~~~~~~~~~i~~~~~~~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  181 (424)
                      ..          +...++| .+|++++|.+||..+++++. |..|.|||..++.         ..++.  ....+.++-+
T Consensus       177 r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~---------~~pL~--~~glgg~slL  244 (445)
T KOG2139|consen  177 RNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQ---------KIPLI--PKGLGGFSLL  244 (445)
T ss_pred             cccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCC---------ccccc--ccCCCceeeE
Confidence            11          1122344 78999999999999999876 5679999997732         22222  2345678889


Q ss_pred             EEEEcCceeEEEEEeCCCcEEEEecCC-CceeeeeecCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCC--CCCCC-Cc
Q 014475          182 VIGYGGVSATIVSASEDRTCKVWSLLK-GRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAE--SPSTS-SY  257 (424)
Q Consensus       182 ~~~~~~~~~~l~~~~~d~~v~iwd~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~--~~~~~-~~  257 (424)
                      .|+|++  .+|++++-|+..++|+... ....+-....+.|...+|+|.|++|+..+. |.-++|.+.-.  ..... ..
T Consensus       245 kwSPdg--d~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~s-gsp~lysl~f~~~~~~~~~~~  321 (445)
T KOG2139|consen  245 KWSPDG--DVLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACS-GSPRLYSLTFDGEDSVFLRPQ  321 (445)
T ss_pred             EEcCCC--CEEEEecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEc-CCceEEEEeecCCCccccCcc
Confidence            999999  8999999999999996543 333344446679999999999998766543 23344444322  21111 00


Q ss_pred             ---Cceeeeeec------c---cCcCeEEEEecC-CCEEEEeCCCC--------cEEEEeCCCCcEEEEEe-cc--CCCe
Q 014475          258 ---GMHIIGSLS------D---HSKAVTCLAYST-GDLLISGSEDG--------MVRVWDPITHNIVRMFR-LA--KGPV  313 (424)
Q Consensus       258 ---~~~~~~~~~------~---~~~~i~~~~~~~-~~~l~t~~~dg--------~i~iwd~~~~~~~~~~~-~~--~~~v  313 (424)
                         ...++..+.      +   -.+++.+++|.| |.+|++.-..+        .|.+||.+..-.+.-.. +.  ...-
T Consensus       322 ~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~vels~cg~i~ge~P  401 (445)
T KOG2139|consen  322 SIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVELSYCGMIGGEYP  401 (445)
T ss_pred             cceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCceEEEecccccCCCC
Confidence               111111111      1   246789999999 99999875433        47778877544333221 11  1123


Q ss_pred             eEEEEEe---cCceeeeccCCCceeeccCC
Q 014475          314 NNILVVR---RPLYLNLGSFSNPHTSSRRH  340 (424)
Q Consensus       314 ~~l~~s~---~~~~l~~~~~d~~i~iw~~~  340 (424)
                      .-++|+|   ++.+|..+-..|.+.-+.+.
T Consensus       402 ~~IsF~pl~n~g~lLsiaWsTGriq~ypl~  431 (445)
T KOG2139|consen  402 AYISFGPLKNEGRLLSIAWSTGRIQRYPLT  431 (445)
T ss_pred             ceEEeeecccCCcEEEEEeccCceEeeeeE
Confidence            5566765   56777777777877766543

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.74  E-value=1.3e-15  Score=132.73  Aligned_cols=246  Identities=17%  Similarity=0.201  Sum_probs=175.6

Q ss_pred             eeEEEECCCCCEEEEecCCCcEEEEEccCcceee----eeccccCCeEEEEE-----ccCCcEEEEeeCCCcEEEEeCCc
Q 014475           83 IKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLK----KWHAHYRAVTCLVF-----SEDGSFLISGSEDGCVRIWSLLT  153 (424)
Q Consensus        83 v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~----~~~~~~~~i~~~~~-----~~~~~~l~s~~~dg~i~iwd~~~  153 (424)
                      +....++-.|.+|+-.-. ..+++|+.+.+....    ...-......|-.|     .|.+--++.|-.-|.+++.|...
T Consensus       126 ~~~~~~~~~gd~lcFnvg-~~lyv~~~~g~~~~~~pi~k~~y~gt~P~cHdfn~~~a~~~g~dllIGf~tGqvq~idp~~  204 (636)
T KOG2394|consen  126 VTNTNQSGKGDRLCFNVG-RELYVYSYRGAADLSKPIDKREYKGTSPTCHDFNSFTATPKGLDLLIGFTTGQVQLIDPIN  204 (636)
T ss_pred             eeeccccCCCCEEEEecC-CeEEEEEccCcchhccchhhhcccCCCCceecccccccCCCCcceEEeeccCceEEecchh
Confidence            444455556777766433 368999887542211    11011122334444     34566688888899999999855


Q ss_pred             ccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCC--------------C----------
Q 014475          154 VFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLK--------------G----------  209 (424)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~--------------~----------  209 (424)
                      . +...      ..-......+..++++.|-+.++ ..++.+-.+|.+.+||...              +          
T Consensus       205 ~-~~sk------lfne~r~i~ktsvT~ikWvpg~~-~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ks  276 (636)
T KOG2394|consen  205 F-EVSK------LFNEERLINKSSVTCIKWVPGSD-SLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKS  276 (636)
T ss_pred             h-HHHH------hhhhcccccccceEEEEEEeCCC-ceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeec
Confidence            1 1000      00111112347899999999876 6778888899999997531              1          


Q ss_pred             ----ceeeeee-cCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEE
Q 014475          210 ----RLLRNIV-FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLL  283 (424)
Q Consensus       210 ----~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l  283 (424)
                          .++.... ..+.|+..+|+|||++||+.+.||.++|||..+.         +++..++.--+...|++|+| +++|
T Consensus       277 k~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~---------eLlg~mkSYFGGLLCvcWSPDGKyI  347 (636)
T KOG2394|consen  277 KKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQ---------ELLGVMKSYFGGLLCVCWSPDGKYI  347 (636)
T ss_pred             cccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHH---------HHHHHHHhhccceEEEEEcCCccEE
Confidence                1111111 2357899999999999999999999999999986         55566666778899999999 9999


Q ss_pred             EEeCCCCcEEEEeCCCCcEEEEEeccCCCeeEEEEEe-------------------------------------------
Q 014475          284 ISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVR-------------------------------------------  320 (424)
Q Consensus       284 ~t~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~-------------------------------------------  320 (424)
                      ++|++|-.|.||.+..++.+..-++|...|..++|.|                                           
T Consensus       348 vtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFDpytt~~ee~~~~~~~~~~~~~~~~~~~~r~~~~~S~~~~~~s~~  427 (636)
T KOG2394|consen  348 VTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFDPYTTSTEEWNNFSGMDSTFSDVAHDFEIRANGTGSAEGCPLSSF  427 (636)
T ss_pred             EecCCcceEEEEEeccceEEEeccccccceeeEeecccccccccccccccccccccchhcccccccCCCCCcCCCccccc
Confidence            9999999999999999999999999999999999982                                           


Q ss_pred             -----cCceeeeccCCCceeeccCCCCCCCC
Q 014475          321 -----RPLYLNLGSFSNPHTSSRRHGSQLPP  346 (424)
Q Consensus       321 -----~~~~l~~~~~d~~i~iw~~~~~~~~~  346 (424)
                           ..-.+.+.+.|-.+.+||+....+.+
T Consensus       428 ~~~~~v~YRfGSVGqDTqlcLWDlteD~L~~  458 (636)
T KOG2394|consen  428 NRINSVTYRFGSVGQDTQLCLWDLTEDVLVP  458 (636)
T ss_pred             ccccceEEEeecccccceEEEEecchhhccc
Confidence                 01246778889999999998665544

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.74  E-value=1.1e-16  Score=137.72  Aligned_cols=258  Identities=17%  Similarity=0.204  Sum_probs=195.0

Q ss_pred             cCCCCeeEEEECCCCCEEEEecCCCcEEEEEccCcceeeee-ccccCCeEEEEEcc--CCcEEEEeeCCCcEEEEeCCcc
Q 014475           78 LPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKW-HAHYRAVTCLVFSE--DGSFLISGSEDGCVRIWSLLTV  154 (424)
Q Consensus        78 ~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~-~~~~~~i~~~~~~~--~~~~l~s~~~dg~i~iwd~~~~  154 (424)
                      .|.+.|+.+.|+..|..|++|+.|..|.+||..+++....+ .+|...|....|.|  +.+.+++++.||.+++=.+...
T Consensus       140 ~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t  219 (559)
T KOG1334|consen  140 KHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILET  219 (559)
T ss_pred             CCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeeeeeccc
Confidence            47899999999999999999999999999999998877666 57988999989988  4567999999999998877431


Q ss_pred             cchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeee----cCc---ceeEEEEC
Q 014475          155 FEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV----FPS---VIDAIALD  227 (424)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~----~~~---~i~~~~~~  227 (424)
                              ......+.+..|.++|.-++.-|... ..|.+++.|+.+.-+|++...+...+.    ...   ....++..
T Consensus       220 --------~~~e~t~rl~~h~g~vhklav~p~sp-~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~  290 (559)
T KOG1334|consen  220 --------GYVENTKRLAPHEGPVHKLAVEPDSP-KPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVD  290 (559)
T ss_pred             --------cceecceecccccCccceeeecCCCC-CcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecC
Confidence                    11222455678999999999999876 789999999999999999876554443    222   57788999


Q ss_pred             CCC-CEEEEEeCCCcEEEEEcCCCCCCCCCc---CceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCC--C
Q 014475          228 PAE-HVFYAGSRDGSIYIAALNAESPSTSSY---GMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPIT--H  300 (424)
Q Consensus       228 ~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~---~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~--~  300 (424)
                      |.. ..+++|+.|-.+++||.+.-.......   .+.+-.........|++++++. +.-|+++-.|-.|+++.-..  |
T Consensus       291 P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G  370 (559)
T KOG1334|consen  291 PRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDG  370 (559)
T ss_pred             CCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccC
Confidence            955 489999999999999998754321110   0111111223456799999996 44445555677799995432  2


Q ss_pred             ----------cEEEE-EeccCC--CeeEEEEE-ecCceeeeccCCCceeeccCCCCCC
Q 014475          301 ----------NIVRM-FRLAKG--PVNNILVV-RRPLYLNLGSFSNPHTSSRRHGSQL  344 (424)
Q Consensus       301 ----------~~~~~-~~~~~~--~v~~l~~s-~~~~~l~~~~~d~~i~iw~~~~~~~  344 (424)
                                ..++. +++|..  .|..+-|- |...|+++||+=|.|.||+.+++++
T Consensus       371 ~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~ei  428 (559)
T KOG1334|consen  371 SEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEI  428 (559)
T ss_pred             CCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHH
Confidence                      22333 778865  57777654 8889999999999999999998876

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.73  E-value=2.7e-15  Score=138.05  Aligned_cols=233  Identities=15%  Similarity=0.083  Sum_probs=159.4

Q ss_pred             eeEEEEECCCCceeeeecCCCCeeEEEECCCCCEEEEec---CCCcEEEEEccCcceeeeeccccCCeEEEEEccCCcEE
Q 014475           61 GSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGG---QSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFL  137 (424)
Q Consensus        61 g~i~vwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~---~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l  137 (424)
                      ..|.+||.+.........+...+...+|||||+.|+..+   .+..|.+|++.+++.... ....+.+....|+|||+.|
T Consensus       179 ~~l~~~d~dg~~~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l-~~~~~~~~~~~~SPDG~~L  257 (429)
T PRK03629        179 YELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQV-ASFPRHNGAPAFSPDGSKL  257 (429)
T ss_pred             eeEEEEcCCCCCCEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEc-cCCCCCcCCeEECCCCCEE
Confidence            589999998776655556677899999999999998754   245799999988754322 2223334568999999988


Q ss_pred             EEe-eCCC--cEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeC-CCcEEE--EecCCCce
Q 014475          138 ISG-SEDG--CVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASE-DRTCKV--WSLLKGRL  211 (424)
Q Consensus       138 ~s~-~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~-d~~v~i--wd~~~~~~  211 (424)
                      +.. +.+|  .|.+||+.++.            ...+..+...+....|+|++  +.|+..+. ++...+  +|+.+++.
T Consensus       258 a~~~~~~g~~~I~~~d~~tg~------------~~~lt~~~~~~~~~~wSPDG--~~I~f~s~~~g~~~Iy~~d~~~g~~  323 (429)
T PRK03629        258 AFALSKTGSLNLYVMDLASGQ------------IRQVTDGRSNNTEPTWFPDS--QNLAYTSDQAGRPQVYKVNINGGAP  323 (429)
T ss_pred             EEEEcCCCCcEEEEEECCCCC------------EEEccCCCCCcCceEECCCC--CEEEEEeCCCCCceEEEEECCCCCe
Confidence            754 4455  48889986521            22333344567788999998  66666554 444444  46666654


Q ss_pred             eeeeecCcceeEEEECCCCCEEEEEeCC---CcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeC
Q 014475          212 LRNIVFPSVIDAIALDPAEHVFYAGSRD---GSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGS  287 (424)
Q Consensus       212 ~~~~~~~~~i~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~  287 (424)
                      ..............|+|+|++++..+.+   ..|++||+.++..       .   .+... .......|+| ++.|+.++
T Consensus       324 ~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~-------~---~Lt~~-~~~~~p~~SpDG~~i~~~s  392 (429)
T PRK03629        324 QRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV-------Q---VLTDT-FLDETPSIAPNGTMVIYSS  392 (429)
T ss_pred             EEeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCe-------E---EeCCC-CCCCCceECCCCCEEEEEE
Confidence            3332244456678999999998876543   3588889877631       1   12111 1234567999 88888888


Q ss_pred             CCCc---EEEEeCCCCcEEEEEeccCCCeeEEEEEe
Q 014475          288 EDGM---VRVWDPITHNIVRMFRLAKGPVNNILVVR  320 (424)
Q Consensus       288 ~dg~---i~iwd~~~~~~~~~~~~~~~~v~~l~~s~  320 (424)
                      .++.   +.++++ +|+....+..|.+.+...+|+|
T Consensus       393 ~~~~~~~l~~~~~-~G~~~~~l~~~~~~~~~p~Wsp  427 (429)
T PRK03629        393 SQGMGSVLNLVST-DGRFKARLPATDGQVKFPAWSP  427 (429)
T ss_pred             cCCCceEEEEEEC-CCCCeEECccCCCCcCCcccCC
Confidence            7664   677776 5777777888888899999987

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.73  E-value=5.8e-16  Score=129.83  Aligned_cols=247  Identities=10%  Similarity=0.127  Sum_probs=187.9

Q ss_pred             CCCeeEEEECCCC--CEEEEecCCCcEEEEEccCcceeeee------ccccCCeEEEEEccCCcEEEEeeCCCcEEEEeC
Q 014475           80 AEPIKPIAANSHG--TYIAGGGQSGDIYMWEVASGRLLKKW------HAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSL  151 (424)
Q Consensus        80 ~~~v~~~~~s~~~--~~l~~~~~dg~v~iwd~~~~~~~~~~------~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~  151 (424)
                      ...+..++|..++  ..+...+.+-.+..+.+........+      ....++|..++..  ...|++|-.+|.+.+|..
T Consensus        55 ~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~--dg~Litc~~sG~l~~~~~  132 (412)
T KOG3881|consen   55 LDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLA--DGTLITCVSSGNLQVRHD  132 (412)
T ss_pred             hhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhc--CCEEEEEecCCcEEEEec
Confidence            4567888887654  34444446667777777666554443      3445677777765  346888899999999998


Q ss_pred             CcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCC--CcEEEEecCCCceeeeee----------cCc
Q 014475          152 LTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASED--RTCKVWSLLKGRLLRNIV----------FPS  219 (424)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d--~~v~iwd~~~~~~~~~~~----------~~~  219 (424)
                      ..+...       ...+..+..+ .++..+.-++... ..+++|+..  ..+.+||+...+.+..-.          .+-
T Consensus       133 k~~d~h-------ss~l~~la~g-~g~~~~r~~~~~p-~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPv  203 (412)
T KOG3881|consen  133 KSGDLH-------SSKLIKLATG-PGLYDVRQTDTDP-YIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPV  203 (412)
T ss_pred             cCCccc-------cccceeeecC-CceeeeccCCCCC-ceEecCchhcccceeeeecccceeeeeccCCCCccccceeee
Confidence            643211       1112222222 3444444444432 677789988  889999999876554433          233


Q ss_pred             ceeEEEECCC--CCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEe
Q 014475          220 VIDAIALDPA--EHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWD  296 (424)
Q Consensus       220 ~i~~~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd  296 (424)
                      .++.+.|-+.  ...|++++.-+.+++||.+.+.        +++..+.--+.+++++...| ++++++|..-|.+..||
T Consensus       204 W~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qR--------RPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD  275 (412)
T KOG3881|consen  204 WITDIRFLEGSPNYKFATITRYHQVRLYDTRHQR--------RPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFD  275 (412)
T ss_pred             eeccceecCCCCCceEEEEecceeEEEecCcccC--------cceeEeccccCcceeeeecCCCcEEEEecccchhheec
Confidence            5678889887  8899999999999999999876        77888887889999999999 99999999999999999


Q ss_pred             CCCCcEEEE-EeccCCCeeEEEEEecCceeeeccCCCceeeccCCCCCCC
Q 014475          297 PITHNIVRM-FRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGSQLP  345 (424)
Q Consensus       297 ~~~~~~~~~-~~~~~~~v~~l~~s~~~~~l~~~~~d~~i~iw~~~~~~~~  345 (424)
                      ++.++.+.. +.+..+.|+++..+|.+++|++++-|..+||+|+.+.++.
T Consensus       276 ~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll  325 (412)
T KOG3881|consen  276 LRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLL  325 (412)
T ss_pred             ccCceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccchhh
Confidence            999998887 8899999999999999999999999999999999987653

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.72  E-value=4.8e-15  Score=136.52  Aligned_cols=236  Identities=17%  Similarity=0.173  Sum_probs=155.9

Q ss_pred             eeEEEEECCCCceeeeecCCCCeeEEEECCCCCEEEEecCC---CcEEEEEccCcceeeeeccccCCeEEEEEccCCcEE
Q 014475           61 GSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQS---GDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFL  137 (424)
Q Consensus        61 g~i~vwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---g~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l  137 (424)
                      ..|.++|.+.........+...+.+.+|+|||+.|+..+.+   ..|.+||+.+++... +....+.+....|+|||+.|
T Consensus       176 ~~L~~~D~dG~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SPDG~~l  254 (427)
T PRK02889        176 YQLQISDADGQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSPDGRTL  254 (427)
T ss_pred             cEEEEECCCCCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEE
Confidence            56888887665554445667889999999999999877543   359999998886543 33334556789999999887


Q ss_pred             E-EeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEe-CCCcEEEEec--CCCceee
Q 014475          138 I-SGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSAS-EDRTCKVWSL--LKGRLLR  213 (424)
Q Consensus       138 ~-s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~-~d~~v~iwd~--~~~~~~~  213 (424)
                      + +.+.+|...+|.++..         .. ....+..+........|+|++  +.++..+ .++...+|.+  .+++...
T Consensus       255 a~~~~~~g~~~Iy~~d~~---------~~-~~~~lt~~~~~~~~~~wSpDG--~~l~f~s~~~g~~~Iy~~~~~~g~~~~  322 (427)
T PRK02889        255 AVALSRDGNSQIYTVNAD---------GS-GLRRLTQSSGIDTEPFFSPDG--RSIYFTSDRGGAPQIYRMPASGGAAQR  322 (427)
T ss_pred             EEEEccCCCceEEEEECC---------CC-CcEECCCCCCCCcCeEEcCCC--CEEEEEecCCCCcEEEEEECCCCceEE
Confidence            6 5677887777765321         11 123344455555677899998  6665544 4566667655  4444322


Q ss_pred             eeecCcceeEEEECCCCCEEEEEeCCC---cEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCC
Q 014475          214 NIVFPSVIDAIALDPAEHVFYAGSRDG---SIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSED  289 (424)
Q Consensus       214 ~~~~~~~i~~~~~~~~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~d  289 (424)
                      ............|+|+|++++..+.++   .|++||+.++..       .   .+..+ .......|+| ++.|+.++.+
T Consensus       323 lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~-------~---~lt~~-~~~~~p~~spdg~~l~~~~~~  391 (427)
T PRK02889        323 VTFTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQV-------T---ALTDT-TRDESPSFAPNGRYILYATQQ  391 (427)
T ss_pred             EecCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCe-------E---EccCC-CCccCceECCCCCEEEEEEec
Confidence            222333345678999999998777654   599999987641       1   12111 2335678999 8877776644


Q ss_pred             C---cEEEEeCCCCcEEEEEeccCCCeeEEEEEec
Q 014475          290 G---MVRVWDPITHNIVRMFRLAKGPVNNILVVRR  321 (424)
Q Consensus       290 g---~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~  321 (424)
                      +   .+.+.++ +++....+..+.+.+...+|+|-
T Consensus       392 ~g~~~l~~~~~-~g~~~~~l~~~~g~~~~p~wsp~  425 (427)
T PRK02889        392 GGRSVLAAVSS-DGRIKQRLSVQGGDVREPSWGPF  425 (427)
T ss_pred             CCCEEEEEEEC-CCCceEEeecCCCCCCCCccCCC
Confidence            3   3556666 46667777767788888888874

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.72  E-value=8.1e-15  Score=121.87  Aligned_cols=269  Identities=16%  Similarity=0.227  Sum_probs=173.6

Q ss_pred             EEeecCCCCCceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCcee---------
Q 014475            4 LIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVE---------   74 (424)
Q Consensus         4 ~lat~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~---------   74 (424)
                      .+|++. .|-+|++||-.+ +....++..  ..+.|+|++  |-|.+...++.+.. +.|.+|..+..-..         
T Consensus       112 ~fava~-nddvVriy~kss-t~pt~Lks~--sQrnvtcla--wRPlsaselavgCr-~gIciW~~s~tln~~r~~~~~s~  184 (445)
T KOG2139|consen  112 AFAVAT-NDDVVRIYDKSS-TCPTKLKSV--SQRNVTCLA--WRPLSASELAVGCR-AGICIWSDSRTLNANRNIRMMST  184 (445)
T ss_pred             hhhhhc-cCcEEEEeccCC-CCCceecch--hhcceeEEE--eccCCcceeeeeec-ceeEEEEcCcccccccccccccc
Confidence            467788 899999999665 555555432  346799999  99987665555555 89999987632211         


Q ss_pred             -----eeecCCCCeeEEEECCCCCEEEEecC-CCcEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEE
Q 014475           75 -----VKSLPAEPIKPIAANSHGTYIAGGGQ-SGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRI  148 (424)
Q Consensus        75 -----~~~~~~~~v~~~~~s~~~~~l~~~~~-dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~i  148 (424)
                           .+.....+|++++|++||..+++++. |..|.|||..++..+.......+.++-+.|+||+.+|+.+.-|+..++
T Consensus       185 ~~~qvl~~pgh~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~davfrl  264 (445)
T KOG2139|consen  185 HHLQVLQDPGHNPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATCDAVFRL  264 (445)
T ss_pred             cchhheeCCCCceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEecccceeee
Confidence                 11112368999999999999999875 567999999999877666556678999999999999999999999999


Q ss_pred             EeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCC--c-----------eeeee
Q 014475          149 WSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKG--R-----------LLRNI  215 (424)
Q Consensus       149 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~--~-----------~~~~~  215 (424)
                      |+....          .. ........+.|...+|+|.|. ..|++.+..-.+.-......  .           ++..+
T Consensus       265 w~e~q~----------wt-~erw~lgsgrvqtacWspcGs-fLLf~~sgsp~lysl~f~~~~~~~~~~~~~k~~lliaDL  332 (445)
T KOG2139|consen  265 WQENQS----------WT-KERWILGSGRVQTACWSPCGS-FLLFACSGSPRLYSLTFDGEDSVFLRPQSIKRVLLIADL  332 (445)
T ss_pred             ehhccc----------ce-ecceeccCCceeeeeecCCCC-EEEEEEcCCceEEEEeecCCCccccCcccceeeeeeccc
Confidence            976331          11 112233445899999999994 45555554443332222111  0           00111


Q ss_pred             e----------cCcceeEEEECCCCCEEEEEeCCC--------cEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEe
Q 014475          216 V----------FPSVIDAIALDPAEHVFYAGSRDG--------SIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAY  277 (424)
Q Consensus       216 ~----------~~~~i~~~~~~~~~~~l~~~~~dg--------~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  277 (424)
                      .          ..+.+.+++|+|.|.++++....+        .|.+||.+......    ........+  .....+.|
T Consensus       333 ~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~ve----ls~cg~i~g--e~P~~IsF  406 (445)
T KOG2139|consen  333 QEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVE----LSYCGMIGG--EYPAYISF  406 (445)
T ss_pred             hhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCceE----EEecccccC--CCCceEEe
Confidence            0          135789999999999999976554        36677776642110    011111111  12445666


Q ss_pred             cC----CCEEEEeCCCCcEEEEeC
Q 014475          278 ST----GDLLISGSEDGMVRVWDP  297 (424)
Q Consensus       278 ~~----~~~l~t~~~dg~i~iwd~  297 (424)
                      +|    +.+|..+=.-|.+.-|++
T Consensus       407 ~pl~n~g~lLsiaWsTGriq~ypl  430 (445)
T KOG2139|consen  407 GPLKNEGRLLSIAWSTGRIQRYPL  430 (445)
T ss_pred             eecccCCcEEEEEeccCceEeeee
Confidence            65    445555545555555543

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.71  E-value=2.5e-14  Score=117.06  Aligned_cols=227  Identities=19%  Similarity=0.238  Sum_probs=156.8

Q ss_pred             EEeecCCCCCceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCCC------ceeEEEEECCCCceeeee
Q 014475            4 LIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSAS------SGSILYWSWSKPQVEVKS   77 (424)
Q Consensus         4 ~lat~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~------~g~i~vwd~~~~~~~~~~   77 (424)
                      .++.|.  |.-.+||+.+.-+...+.+.   ...++..+.  ..--.++++..|..      -..|.|||-.........
T Consensus        19 cFava~--~~Gfriyn~~P~ke~~~r~~---~~~G~~~ve--MLfR~N~laLVGGg~~pky~pNkviIWDD~k~~~i~el   91 (346)
T KOG2111|consen   19 CFAVAT--DTGFRIYNCDPFKESASRQF---IDGGFKIVE--MLFRSNYLALVGGGSRPKYPPNKVIIWDDLKERCIIEL   91 (346)
T ss_pred             eEEEEe--cCceEEEecCchhhhhhhcc---ccCchhhhh--HhhhhceEEEecCCCCCCCCCceEEEEecccCcEEEEE
Confidence            456666  45589999875333222222   222232222  22333444433322      157999996666666666


Q ss_pred             cCCCCeeEEEECCCCCEEEEecCCCcEEEEEcc-Ccceeeeeccc--cCCeEEEEEccCCcEEEE-eeCCCcEEEEeCCc
Q 014475           78 LPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVA-SGRLLKKWHAH--YRAVTCLVFSEDGSFLIS-GSEDGCVRIWSLLT  153 (424)
Q Consensus        78 ~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~-~~~~~~~~~~~--~~~i~~~~~~~~~~~l~s-~~~dg~i~iwd~~~  153 (424)
                      ....+|.++.+.++  .|++.- .+.|+||... +.+.+..+...  ....-+++-..+...|+. |-.-|.|+|-|+..
T Consensus        92 ~f~~~I~~V~l~r~--riVvvl-~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~  168 (346)
T KOG2111|consen   92 SFNSEIKAVKLRRD--RIVVVL-ENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQVQIVDLAS  168 (346)
T ss_pred             EeccceeeEEEcCC--eEEEEe-cCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccceEEEEEhhh
Confidence            77899999999865  455544 4689999987 44555555322  222323332223334443 44568999999965


Q ss_pred             ccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCc-EEEEecCCCceeeeee---cCcceeEEEECCC
Q 014475          154 VFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRT-CKVWSLLKGRLLRNIV---FPSVIDAIALDPA  229 (424)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~-v~iwd~~~~~~~~~~~---~~~~i~~~~~~~~  229 (424)
                      .         .......+..|.+.|.|++.+.+|  ..++|+|..|+ |||||..+|+.+.++.   ....|.+++|+|+
T Consensus       169 ~---------~~~~p~~I~AH~s~Iacv~Ln~~G--t~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~  237 (346)
T KOG2111|consen  169 T---------KPNAPSIINAHDSDIACVALNLQG--TLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPN  237 (346)
T ss_pred             c---------CcCCceEEEcccCceeEEEEcCCc--cEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCC
Confidence            2         221345678999999999999999  89999999997 7899999999999987   5678999999999


Q ss_pred             CCEEEEEeCCCcEEEEEcCCCC
Q 014475          230 EHVFYAGSRDGSIYIAALNAES  251 (424)
Q Consensus       230 ~~~l~~~~~dg~i~i~d~~~~~  251 (424)
                      ..+|+++++.|+++++.++...
T Consensus       238 ~s~LavsSdKgTlHiF~l~~~~  259 (346)
T KOG2111|consen  238 SSWLAVSSDKGTLHIFSLRDTE  259 (346)
T ss_pred             ccEEEEEcCCCeEEEEEeecCC
Confidence            9999999999999999998754

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.71  E-value=8e-16  Score=134.05  Aligned_cols=220  Identities=10%  Similarity=0.156  Sum_probs=157.6

Q ss_pred             eecCCCccccCCCCceeEEEEECCCCceee-----eecCCCCeeEEEE-----CCCCCEEEEecCCCcEEEEEccCccee
Q 014475           46 FLASSQLREQPSASSGSILYWSWSKPQVEV-----KSLPAEPIKPIAA-----NSHGTYIAGGGQSGDIYMWEVASGRLL  115 (424)
Q Consensus        46 ~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~-----~~~~~~~v~~~~~-----s~~~~~l~~~~~dg~v~iwd~~~~~~~  115 (424)
                      ++..|.+|+..-.  ..+.+|+........     +........|-+|     .|.+--++.|-..|.|.+.|....+..
T Consensus       131 ~~~~gd~lcFnvg--~~lyv~~~~g~~~~~~pi~k~~y~gt~P~cHdfn~~~a~~~g~dllIGf~tGqvq~idp~~~~~s  208 (636)
T KOG2394|consen  131 QSGKGDRLCFNVG--RELYVYSYRGAADLSKPIDKREYKGTSPTCHDFNSFTATPKGLDLLIGFTTGQVQLIDPINFEVS  208 (636)
T ss_pred             ccCCCCEEEEecC--CeEEEEEccCcchhccchhhhcccCCCCceecccccccCCCCcceEEeeccCceEEecchhhHHH
Confidence            4455666665544  478888887432211     1122333444455     346667888888899999998763322


Q ss_pred             eeec----cccCCeEEEEEcc-CCcEEEEeeCCCcEEEEeCCcccchhc-----cc------------ccccceEEeecC
Q 014475          116 KKWH----AHYRAVTCLVFSE-DGSFLISGSEDGCVRIWSLLTVFEECE-----SQ------------RASHLYLHSFTG  173 (424)
Q Consensus       116 ~~~~----~~~~~i~~~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~-----~~------------~~~~~~~~~~~~  173 (424)
                      +.+.    -....++|+.|-| +...++++-.+|.+.+||.+-......     ..            .....++..+.-
T Consensus       209 klfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~  288 (636)
T KOG2394|consen  209 KLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHI  288 (636)
T ss_pred             HhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEe
Confidence            2221    1347899999998 455677778899999998743111100     00            011123334444


Q ss_pred             CcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeee-cCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCC
Q 014475          174 HTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESP  252 (424)
Q Consensus       174 ~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~  252 (424)
                      .++.|...+|++++  ++|++.+.||.++|+|..+.+++..++ .-+...|++|+|||+++++|+.|..|.+|.+...  
T Consensus       289 ~~g~in~f~FS~DG--~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~er--  364 (636)
T KOG2394|consen  289 GEGSINEFAFSPDG--KYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEER--  364 (636)
T ss_pred             ccccccceeEcCCC--ceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEeccc--
Confidence            55688999999988  999999999999999999988877766 5678999999999999999999999999999986  


Q ss_pred             CCCCcCceeeeeecccCcCeEEEEec
Q 014475          253 STSSYGMHIIGSLSDHSKAVTCLAYS  278 (424)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~~i~~~~~~  278 (424)
                             +.+..-++|..+|+.++|.
T Consensus       365 -------RVVARGqGHkSWVs~VaFD  383 (636)
T KOG2394|consen  365 -------RVVARGQGHKSWVSVVAFD  383 (636)
T ss_pred             -------eEEEeccccccceeeEeec
Confidence                   7788889999999999998

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.71  E-value=8.2e-15  Score=134.81  Aligned_cols=235  Identities=13%  Similarity=0.138  Sum_probs=157.8

Q ss_pred             CceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCC--CceeEEEEECCCCceeeeecCCCCeeEEEECC
Q 014475           13 TGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSA--SSGSILYWSWSKPQVEVKSLPAEPIKPIAANS   90 (424)
Q Consensus        13 g~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~--~~g~i~vwd~~~~~~~~~~~~~~~v~~~~~s~   90 (424)
                      ..|.+||...+.. +.+..+   ...+....  |+|||+.++..+.  .+..|.+|++.+++........+.+...+|+|
T Consensus       179 ~~l~~~d~dg~~~-~~lt~~---~~~~~~p~--wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~~~~~~~SP  252 (429)
T PRK03629        179 YELRVSDYDGYNQ-FVVHRS---PQPLMSPA--WSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSP  252 (429)
T ss_pred             eeEEEEcCCCCCC-EEeecC---CCceeeeE--EcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCCCcCCeEECC
Confidence            3699999875443 334322   24566667  9999999986532  12579999998877554444455567889999


Q ss_pred             CCCEEEEe-cCCC--cEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEeeCC-CcEEEE--eCCcccchhcccccc
Q 014475           91 HGTYIAGG-GQSG--DIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSED-GCVRIW--SLLTVFEECESQRAS  164 (424)
Q Consensus        91 ~~~~l~~~-~~dg--~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d-g~i~iw--d~~~~~~~~~~~~~~  164 (424)
                      ||+.|+.. +.+|  .|++||+++++... +..+...+....|+|||+.|+..+.+ +...+|  |+.++         .
T Consensus       253 DG~~La~~~~~~g~~~I~~~d~~tg~~~~-lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g---------~  322 (429)
T PRK03629        253 DGSKLAFALSKTGSLNLYVMDLASGQIRQ-VTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGG---------A  322 (429)
T ss_pred             CCCEEEEEEcCCCCcEEEEEECCCCCEEE-ccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCC---------C
Confidence            99988865 3344  59999998876544 33344567889999999988776654 444555  55431         1


Q ss_pred             cceEEeecCCcCceeEEEEEEcCceeEEEEEeCC---CcEEEEecCCCceeeeeecCcceeEEEECCCCCEEEEEeCCCc
Q 014475          165 HLYLHSFTGHTLRITDIVIGYGGVSATIVSASED---RTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGS  241 (424)
Q Consensus       165 ~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d---~~v~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~  241 (424)
                         ...+..+........|+|++  +.++..+.+   ..|.+||+.+++.. .+..........|+|+|+.++.++.++.
T Consensus       323 ---~~~lt~~~~~~~~~~~SpDG--~~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt~~~~~~~p~~SpDG~~i~~~s~~~~  396 (429)
T PRK03629        323 ---PQRITWEGSQNQDADVSSDG--KFMVMVSSNGGQQHIAKQDLATGGVQ-VLTDTFLDETPSIAPNGTMVIYSSSQGM  396 (429)
T ss_pred             ---eEEeecCCCCccCEEECCCC--CEEEEEEccCCCceEEEEECCCCCeE-EeCCCCCCCCceECCCCCEEEEEEcCCC
Confidence               12222233345568899998  676665543   35888999887643 3333333456789999999999887764


Q ss_pred             ---EEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC
Q 014475          242 ---IYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST  279 (424)
Q Consensus       242 ---i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  279 (424)
                         +.+++++..          ....+.+|.+.+...+|+|
T Consensus       397 ~~~l~~~~~~G~----------~~~~l~~~~~~~~~p~Wsp  427 (429)
T PRK03629        397 GSVLNLVSTDGR----------FKARLPATDGQVKFPAWSP  427 (429)
T ss_pred             ceEEEEEECCCC----------CeEECccCCCCcCCcccCC
Confidence               677777553          2445666778888888886

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.70  E-value=1e-14  Score=134.83  Aligned_cols=233  Identities=17%  Similarity=0.107  Sum_probs=158.0

Q ss_pred             eeEEEEECCCCceeeeecCCCCeeEEEECCCCCEEEEecCC---CcEEEEEccCcceeeeeccccCCeEEEEEccCCcEE
Q 014475           61 GSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQS---GDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFL  137 (424)
Q Consensus        61 g~i~vwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---g~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l  137 (424)
                      ..|.+||.+.........+...+.+.+|+|||+.|+..+.+   ..|++||+.+++... +....+...+..|+|+|+.+
T Consensus       184 ~~l~i~D~~g~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~~g~~~~~~~SpDG~~l  262 (433)
T PRK04922        184 YALQVADSDGYNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-VASFRGINGAPSFSPDGRRL  262 (433)
T ss_pred             EEEEEECCCCCCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-eccCCCCccCceECCCCCEE
Confidence            57999998876665555667789999999999999987643   469999998876533 33334455678999999877


Q ss_pred             E-EeeCCC--cEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEe-CCCc--EEEEecCCCce
Q 014475          138 I-SGSEDG--CVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSAS-EDRT--CKVWSLLKGRL  211 (424)
Q Consensus       138 ~-s~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~-~d~~--v~iwd~~~~~~  211 (424)
                      + +.+.+|  .|++||+.++.            ...+..+.......+|+|++  +.++.++ .+|.  |.++|+.+++.
T Consensus       263 ~~~~s~~g~~~Iy~~d~~~g~------------~~~lt~~~~~~~~~~~spDG--~~l~f~sd~~g~~~iy~~dl~~g~~  328 (433)
T PRK04922        263 ALTLSRDGNPEIYVMDLGSRQ------------LTRLTNHFGIDTEPTWAPDG--KSIYFTSDRGGRPQIYRVAASGGSA  328 (433)
T ss_pred             EEEEeCCCCceEEEEECCCCC------------eEECccCCCCccceEECCCC--CEEEEEECCCCCceEEEEECCCCCe
Confidence            5 445555  58999986521            22334444455678999998  6666555 4454  66667766654


Q ss_pred             eeeeecCcceeEEEECCCCCEEEEEeCCC---cEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeC
Q 014475          212 LRNIVFPSVIDAIALDPAEHVFYAGSRDG---SIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGS  287 (424)
Q Consensus       212 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~  287 (424)
                      .............+|+|+|++++..+.++   .|.+||+.++..       .   .+. +........|+| +++++..+
T Consensus       329 ~~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~-------~---~Lt-~~~~~~~p~~spdG~~i~~~s  397 (433)
T PRK04922        329 ERLTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSV-------R---TLT-PGSLDESPSFAPNGSMVLYAT  397 (433)
T ss_pred             EEeecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCe-------E---ECC-CCCCCCCceECCCCCEEEEEE
Confidence            33322334455789999999998765443   589999877531       1   222 222344568999 88777665


Q ss_pred             C---CCcEEEEeCCCCcEEEEEeccCCCeeEEEEEe
Q 014475          288 E---DGMVRVWDPITHNIVRMFRLAKGPVNNILVVR  320 (424)
Q Consensus       288 ~---dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~  320 (424)
                      .   .+.|.++++. +.....+..+.+.+...+|+|
T Consensus       398 ~~~g~~~L~~~~~~-g~~~~~l~~~~g~~~~p~wsp  432 (433)
T PRK04922        398 REGGRGVLAAVSTD-GRVRQRLVSADGEVREPAWSP  432 (433)
T ss_pred             ecCCceEEEEEECC-CCceEEcccCCCCCCCCccCC
Confidence            4   3458888874 555666666667788888876

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.69  E-value=1.4e-14  Score=129.30  Aligned_cols=281  Identities=11%  Similarity=0.098  Sum_probs=175.6

Q ss_pred             EEeecCCCCCceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCceeeeec-----
Q 014475            4 LIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSL-----   78 (424)
Q Consensus         4 ~lat~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~~~-----   78 (424)
                      ++++++ .||.|.++|+.+++.+++++...    ....++  +++||++++++....+.+.++|.++.+......     
T Consensus        50 ~~yv~~-rdg~vsviD~~~~~~v~~i~~G~----~~~~i~--~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~  122 (369)
T PF02239_consen   50 YLYVAN-RDGTVSVIDLATGKVVATIKVGG----NPRGIA--VSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMP  122 (369)
T ss_dssp             EEEEEE-TTSEEEEEETTSSSEEEEEE-SS----EEEEEE--E--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-
T ss_pred             EEEEEc-CCCeEEEEECCcccEEEEEecCC----CcceEE--EcCCCCEEEEEecCCCceeEeccccccceeeccccccc
Confidence            355566 78999999999999999997653    345566  999999999998767999999998877654322     


Q ss_pred             ---CCCCeeEEEECCCCCEEEEe-cCCCcEEEEEccCcceee-eeccccCCeEEEEEccCCcEEEEe-eCCCcEEEEeCC
Q 014475           79 ---PAEPIKPIAANSHGTYIAGG-GQSGDIYMWEVASGRLLK-KWHAHYRAVTCLVFSEDGSFLISG-SEDGCVRIWSLL  152 (424)
Q Consensus        79 ---~~~~v~~~~~s~~~~~l~~~-~~dg~v~iwd~~~~~~~~-~~~~~~~~i~~~~~~~~~~~l~s~-~~dg~i~iwd~~  152 (424)
                         ....+.++..+|....++.. -+.+.|.+.|....+.+. .............|+|++++++++ ..+..|-++|..
T Consensus       123 ~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~  202 (369)
T PF02239_consen  123 VDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTK  202 (369)
T ss_dssp             TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETT
T ss_pred             ccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeecccccccccccCcccceeeecccccceeEEEeec
Confidence               23467888889988855544 445888888887654332 222244567789999999987765 446689999987


Q ss_pred             cccchhcccccccceEEeecCCcCceeE-------EEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeeecCcceeEEE
Q 014475          153 TVFEECESQRASHLYLHSFTGHTLRITD-------IVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIA  225 (424)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~-------~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~i~~~~  225 (424)
                      +...........       ..|..+...       ..|...+.+...++.-....+.+||..+.+.++.+...+.-.-+.
T Consensus       203 ~~k~v~~i~~g~-------~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~glFi~  275 (369)
T PF02239_consen  203 TGKLVALIDTGK-------KPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGGLFIK  275 (369)
T ss_dssp             TTEEEEEEE-SS-------SBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS--EE
T ss_pred             cceEEEEeeccc-------cccccccccccCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEECCCCcceee
Confidence            643221111100       112222221       223333222333333334467789999999999999665558888


Q ss_pred             ECCCCCEEEEE----eCCCcEEEEEcCCCCCCCCCcCceeeeeecc-cCcCeEEEEecC-CCEEEEeC--CCCcEEEEeC
Q 014475          226 LDPAEHVFYAG----SRDGSIYIAALNAESPSTSSYGMHIIGSLSD-HSKAVTCLAYST-GDLLISGS--EDGMVRVWDP  297 (424)
Q Consensus       226 ~~~~~~~l~~~----~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~-~~~l~t~~--~dg~i~iwd~  297 (424)
                      .+|+++++++.    ...+.|.++|.++.         +.+..+.. ....+..+.|++ |+.+..+.  .++.|.+||.
T Consensus       276 thP~s~~vwvd~~~~~~~~~v~viD~~tl---------~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~  346 (369)
T PF02239_consen  276 THPDSRYVWVDTFLNPDADTVQVIDKKTL---------KVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDA  346 (369)
T ss_dssp             --TT-SEEEEE-TT-SSHT-EEEEECCGT---------EEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TTEEEEEET
T ss_pred             cCCCCccEEeeccCCCCCceEEEEECcCc---------ceeEEEeccCCCcEeccEECCCCCEEEEEEecCCCEEEEEEC
Confidence            99999999998    45579999999996         44444432 223588999999 77665554  3347999999


Q ss_pred             CCCcEEEEEe
Q 014475          298 ITHNIVRMFR  307 (424)
Q Consensus       298 ~~~~~~~~~~  307 (424)
                      .+.+.+..+.
T Consensus       347 ~Tl~~~~~i~  356 (369)
T PF02239_consen  347 KTLKEKKRIP  356 (369)
T ss_dssp             TTTEEEEEEE
T ss_pred             CCcEEEEEEE
Confidence            9999999987

...

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.68  E-value=3e-14  Score=131.94  Aligned_cols=232  Identities=13%  Similarity=0.015  Sum_probs=158.4

Q ss_pred             eeEEEEECCCCceeeeecCCCCeeEEEECCCCCEEEEecC---CCcEEEEEccCcceeeeeccccCCeEEEEEccCCcEE
Q 014475           61 GSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQ---SGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFL  137 (424)
Q Consensus        61 g~i~vwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~---dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l  137 (424)
                      ..|.+||.+.........+...+.+.+|+|||+.|+..+.   +..|++||+.+++.. .+..+.+.+....|+|||+.|
T Consensus       182 ~~l~~~d~dg~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG~~l  260 (435)
T PRK05137        182 KRLAIMDQDGANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSPDGRKV  260 (435)
T ss_pred             eEEEEECCCCCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEECCCCCEE
Confidence            5899999887776666677889999999999999888753   467999999887653 344456677889999999887


Q ss_pred             E-EeeCCCc--EEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEe-CCC--cEEEEecCCCce
Q 014475          138 I-SGSEDGC--VRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSAS-EDR--TCKVWSLLKGRL  211 (424)
Q Consensus       138 ~-s~~~dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~-~d~--~v~iwd~~~~~~  211 (424)
                      + +.+.++.  |.+||+.++            ....+..+........|+|++  +.++..+ .+|  .|.++|+..++.
T Consensus       261 a~~~~~~g~~~Iy~~d~~~~------------~~~~Lt~~~~~~~~~~~spDG--~~i~f~s~~~g~~~Iy~~d~~g~~~  326 (435)
T PRK05137        261 VMSLSQGGNTDIYTMDLRSG------------TTTRLTDSPAIDTSPSYSPDG--SQIVFESDRSGSPQLYVMNADGSNP  326 (435)
T ss_pred             EEEEecCCCceEEEEECCCC------------ceEEccCCCCccCceeEcCCC--CEEEEEECCCCCCeEEEEECCCCCe
Confidence            5 5555655  677787542            123344455556778999998  6666555 333  588888876655


Q ss_pred             eeeeecCcceeEEEECCCCCEEEEEeCC---CcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeC
Q 014475          212 LRNIVFPSVIDAIALDPAEHVFYAGSRD---GSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGS  287 (424)
Q Consensus       212 ~~~~~~~~~i~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~  287 (424)
                      .........+....|+|+|+.++....+   ..|.+||+..+.          ...+. ....+....|+| ++.|+..+
T Consensus       327 ~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~----------~~~lt-~~~~~~~p~~spDG~~i~~~~  395 (435)
T PRK05137        327 RRISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSG----------ERILT-SGFLVEGPTWAPNGRVIMFFR  395 (435)
T ss_pred             EEeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCc----------eEecc-CCCCCCCCeECCCCCEEEEEE
Confidence            4433345566778999999999877643   357888875542          11121 122466788999 88776654


Q ss_pred             CC------CcEEEEeCCCCcEEEEEeccCCCeeEEEEEe
Q 014475          288 ED------GMVRVWDPITHNIVRMFRLAKGPVNNILVVR  320 (424)
Q Consensus       288 ~d------g~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~  320 (424)
                      .+      ..+.++|+..+.. ..+. ..+.+...+|+|
T Consensus       396 ~~~~~~~~~~L~~~dl~g~~~-~~l~-~~~~~~~p~Wsp  432 (435)
T PRK05137        396 QTPGSGGAPKLYTVDLTGRNE-REVP-TPGDASDPAWSP  432 (435)
T ss_pred             ccCCCCCcceEEEEECCCCce-EEcc-CCCCccCcccCC
Confidence            32      3578888765543 4444 344566677776

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.68  E-value=1.7e-14  Score=132.94  Aligned_cols=238  Identities=15%  Similarity=0.100  Sum_probs=152.3

Q ss_pred             CCceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCCCc--eeEEEEECCCCceeeeecCCCCeeEEEEC
Q 014475           12 DTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASS--GSILYWSWSKPQVEVKSLPAEPIKPIAAN   89 (424)
Q Consensus        12 dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~--g~i~vwd~~~~~~~~~~~~~~~v~~~~~s   89 (424)
                      ...|.++|.. |...+.+..+   ...+...+  |+|+|+.++.++..+  ..|.+||+.+++........+.+.+.+|+
T Consensus       175 ~~~L~~~D~d-G~~~~~l~~~---~~~v~~p~--wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~g~~~~~~~S  248 (427)
T PRK02889        175 RYQLQISDAD-GQNAQSALSS---PEPIISPA--WSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANFKGSNSAPAWS  248 (427)
T ss_pred             ccEEEEECCC-CCCceEeccC---CCCcccce--EcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecCCCCccceEEC
Confidence            4568888864 5544444333   24466666  999999998776432  46999999988765444445667789999


Q ss_pred             CCCCEEEE-ecCCCcEEEEEc--cCcceeeeeccccCCeEEEEEccCCcEEEEeeC-CCcEEEEeCCcccchhccccccc
Q 014475           90 SHGTYIAG-GGQSGDIYMWEV--ASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSE-DGCVRIWSLLTVFEECESQRASH  165 (424)
Q Consensus        90 ~~~~~l~~-~~~dg~v~iwd~--~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~  165 (424)
                      |||+.|+. .+.+|...||.+  ..+. ...+..+........|+|||+.|+..+. +|...+|.+....       .. 
T Consensus       249 PDG~~la~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~-------g~-  319 (427)
T PRK02889        249 PDGRTLAVALSRDGNSQIYTVNADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASG-------GA-  319 (427)
T ss_pred             CCCCEEEEEEccCCCceEEEEECCCCC-cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCC-------Cc-
Confidence            99998874 567777666654  4443 4455555556677899999998876654 4666777653210       11 


Q ss_pred             ceEEeecCCcCceeEEEEEEcCceeEEEEEeCCC---cEEEEecCCCceeeeeecCcceeEEEECCCCCEEEEEeCCC--
Q 014475          166 LYLHSFTGHTLRITDIVIGYGGVSATIVSASEDR---TCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDG--  240 (424)
Q Consensus       166 ~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~---~v~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg--  240 (424)
                        ...+..+........|+|++  +.++..+.++   .|.+||+.+++... +..........|+|+++.|+..+.++  
T Consensus       320 --~~~lt~~g~~~~~~~~SpDG--~~Ia~~s~~~g~~~I~v~d~~~g~~~~-lt~~~~~~~p~~spdg~~l~~~~~~~g~  394 (427)
T PRK02889        320 --AQRVTFTGSYNTSPRISPDG--KLLAYISRVGGAFKLYVQDLATGQVTA-LTDTTRDESPSFAPNGRYILYATQQGGR  394 (427)
T ss_pred             --eEEEecCCCCcCceEECCCC--CEEEEEEccCCcEEEEEEECCCCCeEE-ccCCCCccCceECCCCCEEEEEEecCCC
Confidence              11111122233456899998  7777666554   59999998876543 33333456789999999988877544  


Q ss_pred             -cEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC
Q 014475          241 -SIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST  279 (424)
Q Consensus       241 -~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  279 (424)
                       .+++.+...          .....+..+.+.+...+|+|
T Consensus       395 ~~l~~~~~~g----------~~~~~l~~~~g~~~~p~wsp  424 (427)
T PRK02889        395 SVLAAVSSDG----------RIKQRLSVQGGDVREPSWGP  424 (427)
T ss_pred             EEEEEEECCC----------CceEEeecCCCCCCCCccCC
Confidence             355555533          22333444556667777776

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.67  E-value=1.3e-14  Score=134.06  Aligned_cols=235  Identities=14%  Similarity=0.115  Sum_probs=154.5

Q ss_pred             CceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCCCc--eeEEEEECCCCceeeeecCCCCeeEEEECC
Q 014475           13 TGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASS--GSILYWSWSKPQVEVKSLPAEPIKPIAANS   90 (424)
Q Consensus        13 g~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~--g~i~vwd~~~~~~~~~~~~~~~v~~~~~s~   90 (424)
                      ..|.+||.. +...+.+..+.   ..+....  |+|+|+.++..+..+  ..|.+||+.+++........+...+.+|+|
T Consensus       184 ~~l~i~D~~-g~~~~~lt~~~---~~v~~p~--wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~g~~~~~~~Sp  257 (433)
T PRK04922        184 YALQVADSD-GYNPQTILRSA---EPILSPA--WSPDGKKLAYVSFERGRSAIYVQDLATGQRELVASFRGINGAPSFSP  257 (433)
T ss_pred             EEEEEECCC-CCCceEeecCC---Ccccccc--CCCCCCEEEEEecCCCCcEEEEEECCCCCEEEeccCCCCccCceECC
Confidence            469999986 44444454332   3466666  999999999876432  479999998877654444455566889999


Q ss_pred             CCCEEEE-ecCCC--cEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEeeC-CCc--EEEEeCCcccchhcccccc
Q 014475           91 HGTYIAG-GGQSG--DIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSE-DGC--VRIWSLLTVFEECESQRAS  164 (424)
Q Consensus        91 ~~~~l~~-~~~dg--~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~-dg~--i~iwd~~~~~~~~~~~~~~  164 (424)
                      ||+.++. .+.+|  .|++||+.+++.. .+..+.......+|+||++.|+..+. +|.  |.++|+.++.         
T Consensus       258 DG~~l~~~~s~~g~~~Iy~~d~~~g~~~-~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~---------  327 (433)
T PRK04922        258 DGRRLALTLSRDGNPEIYVMDLGSRQLT-RLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGS---------  327 (433)
T ss_pred             CCCEEEEEEeCCCCceEEEEECCCCCeE-ECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCC---------
Confidence            9997764 34444  5999999887643 45455555678899999998887664 444  6666664421         


Q ss_pred             cceEEeecCCcCceeEEEEEEcCceeEEEEEeCCC---cEEEEecCCCceeeeeecCcceeEEEECCCCCEEEEEeCC--
Q 014475          165 HLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDR---TCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRD--  239 (424)
Q Consensus       165 ~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~---~v~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d--  239 (424)
                         ...+..+.......+|+|++  +.++..+.++   .|.+||+.+++.. .+..........|+|+|+.++..+.+  
T Consensus       328 ---~~~lt~~g~~~~~~~~SpDG--~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt~~~~~~~p~~spdG~~i~~~s~~~g  401 (433)
T PRK04922        328 ---AERLTFQGNYNARASVSPDG--KKIAMVHGSGGQYRIAVMDLSTGSVR-TLTPGSLDESPSFAPNGSMVLYATREGG  401 (433)
T ss_pred             ---eEEeecCCCCccCEEECCCC--CEEEEEECCCCceeEEEEECCCCCeE-ECCCCCCCCCceECCCCCEEEEEEecCC
Confidence               11112222334467899998  6776654433   5999999887654 44443345667999999988876653  


Q ss_pred             -CcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC
Q 014475          240 -GSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST  279 (424)
Q Consensus       240 -g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  279 (424)
                       +.|++++....          ....+..+.+.+...+|+|
T Consensus       402 ~~~L~~~~~~g~----------~~~~l~~~~g~~~~p~wsp  432 (433)
T PRK04922        402 RGVLAAVSTDGR----------VRQRLVSADGEVREPAWSP  432 (433)
T ss_pred             ceEEEEEECCCC----------ceEEcccCCCCCCCCccCC
Confidence             35777777553          2333444455566667765

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.62  E-value=2.1e-14  Score=120.62  Aligned_cols=208  Identities=14%  Similarity=0.163  Sum_probs=164.1

Q ss_pred             EEeecCCCCCceEEEeCCCCc----eEEEeeCCCCCCCceEEecceeecCCCccccCCCCc--eeEEEEECCCCceeeee
Q 014475            4 LIASSSVADTGIGCWDLESGA----EQLRYKSCASPPHGLACVGQRFLASSQLREQPSASS--GSILYWSWSKPQVEVKS   77 (424)
Q Consensus         4 ~lat~~~~dg~i~vwd~~~~~----~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~--g~i~vwd~~~~~~~~~~   77 (424)
                      .|.++- .+|.+.+|..+.+.    .+..+..+    .++..+.  -.+....+++.|...  ..+.+||++..+..+..
T Consensus       117 ~Litc~-~sG~l~~~~~k~~d~hss~l~~la~g----~g~~~~r--~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~a  189 (412)
T KOG3881|consen  117 TLITCV-SSGNLQVRHDKSGDLHSSKLIKLATG----PGLYDVR--QTDTDPYIVATGGKENINELKIWDLEQSKQIWSA  189 (412)
T ss_pred             EEEEEe-cCCcEEEEeccCCccccccceeeecC----Cceeeec--cCCCCCceEecCchhcccceeeeecccceeeeec
Confidence            467777 88999999998543    22333332    4456666  777777777755544  67999999887555443


Q ss_pred             c--C--------CCCeeEEEECCC--CCEEEEecCCCcEEEEEccCc-ceeeeeccccCCeEEEEEccCCcEEEEeeCCC
Q 014475           78 L--P--------AEPIKPIAANSH--GTYIAGGGQSGDIYMWEVASG-RLLKKWHAHYRAVTCLVFSEDGSFLISGSEDG  144 (424)
Q Consensus        78 ~--~--------~~~v~~~~~s~~--~~~l~~~~~dg~v~iwd~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg  144 (424)
                      .  .        +-.++.+.|-+.  ...||+++.-+.|++||.+.+ +++..+.-...+++++...|+++++++|..-|
T Consensus       190 KNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g  269 (412)
T KOG3881|consen  190 KNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKG  269 (412)
T ss_pred             cCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccc
Confidence            2  1        224678889887  889999999999999999866 56777777788999999999999999999999


Q ss_pred             cEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeeecCcceeEE
Q 014475          145 CVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAI  224 (424)
Q Consensus       145 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~i~~~  224 (424)
                      .+..||++.+          ......+.+-.+.|+++..+|..  .++++++-|..|||+|+.+.+++........++++
T Consensus       270 ~l~~FD~r~~----------kl~g~~~kg~tGsirsih~hp~~--~~las~GLDRyvRIhD~ktrkll~kvYvKs~lt~i  337 (412)
T KOG3881|consen  270 QLAKFDLRGG----------KLLGCGLKGITGSIRSIHCHPTH--PVLASCGLDRYVRIHDIKTRKLLHKVYVKSRLTFI  337 (412)
T ss_pred             hhheecccCc----------eeeccccCCccCCcceEEEcCCC--ceEEeeccceeEEEeecccchhhhhhhhhccccEE
Confidence            9999999652          22334478889999999999998  89999999999999999998888888788888888


Q ss_pred             EECCCC
Q 014475          225 ALDPAE  230 (424)
Q Consensus       225 ~~~~~~  230 (424)
                      .+.++-
T Consensus       338 l~~~~~  343 (412)
T KOG3881|consen  338 LLRDDV  343 (412)
T ss_pred             EecCCc
Confidence            886643

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.62  E-value=2.8e-13  Score=125.50  Aligned_cols=214  Identities=14%  Similarity=0.046  Sum_probs=145.6

Q ss_pred             CcEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEeeC---CCcEEEEeCCcccchhcccccccceEEeecCCcCce
Q 014475          102 GDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSE---DGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRI  178 (424)
Q Consensus       102 g~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i  178 (424)
                      ..|.++|.. +...+.+..|...+.+..|+|||+.|+..+.   +..|.+||+.++.            ...+..+.+.+
T Consensus       182 ~~l~~~d~d-g~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~------------~~~l~~~~g~~  248 (435)
T PRK05137        182 KRLAIMDQD-GANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQ------------RELVGNFPGMT  248 (435)
T ss_pred             eEEEEECCC-CCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCc------------EEEeecCCCcc
Confidence            368899974 4445566678889999999999999887764   4679999996632            12234455567


Q ss_pred             eEEEEEEcCceeEE-EEEeCCCc--EEEEecCCCceeeeeecCcceeEEEECCCCCEEEEEeC-CC--cEEEEEcCCCCC
Q 014475          179 TDIVIGYGGVSATI-VSASEDRT--CKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSR-DG--SIYIAALNAESP  252 (424)
Q Consensus       179 ~~~~~~~~~~~~~l-~~~~~d~~--v~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg--~i~i~d~~~~~~  252 (424)
                      ....|+|++  +.| ++.+.++.  |.+||+.+++......+........|+|+|+.++..+. +|  .|+++|+..+. 
T Consensus       249 ~~~~~SPDG--~~la~~~~~~g~~~Iy~~d~~~~~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~-  325 (435)
T PRK05137        249 FAPRFSPDG--RKVVMSLSQGGNTDIYTMDLRSGTTTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSN-  325 (435)
T ss_pred             cCcEECCCC--CEEEEEEecCCCceEEEEECCCCceEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCC-
Confidence            788999998  554 56666665  77779888776544335556678899999998887764 33  57888876643 


Q ss_pred             CCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCC---CcEEEEeCCCCcEEEEEeccCCCeeEEEEEecCceeeec
Q 014475          253 STSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSED---GMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLG  328 (424)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~d---g~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~  328 (424)
                               ...+..+...+....|+| ++.|+..+.+   ..|.+||+..+. ...+. ....+....|+|||++|+..
T Consensus       326 ---------~~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~-~~~lt-~~~~~~~p~~spDG~~i~~~  394 (435)
T PRK05137        326 ---------PRRISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSG-ERILT-SGFLVEGPTWAPNGRVIMFF  394 (435)
T ss_pred             ---------eEEeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCc-eEecc-CCCCCCCCeECCCCCEEEEE
Confidence                     222222344566788999 8888776543   368889976554 33343 23357788999999998765


Q ss_pred             cCCC------ceeeccCCCC
Q 014475          329 SFSN------PHTSSRRHGS  342 (424)
Q Consensus       329 ~~d~------~i~iw~~~~~  342 (424)
                      +.++      .+.+.++.+.
T Consensus       395 ~~~~~~~~~~~L~~~dl~g~  414 (435)
T PRK05137        395 RQTPGSGGAPKLYTVDLTGR  414 (435)
T ss_pred             EccCCCCCcceEEEEECCCC
Confidence            5432      4566666544

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=99.61  E-value=1.2e-12  Score=119.37  Aligned_cols=303  Identities=15%  Similarity=0.103  Sum_probs=187.8

Q ss_pred             EEeecCCCCCceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCceeeeecCCCCe
Q 014475            4 LIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSLPAEPI   83 (424)
Q Consensus         4 ~lat~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~~~~~~~v   83 (424)
                      .+++++ .+|.|.-+|..+|+.+-+.+........       ...++..+++++.+ |.+..+|.++++..+.....+.+
T Consensus        67 ~v~v~~-~~g~v~a~d~~tG~~~W~~~~~~~~~~~-------p~v~~~~v~v~~~~-g~l~ald~~tG~~~W~~~~~~~~  137 (377)
T TIGR03300        67 KVYAAD-ADGTVVALDAETGKRLWRVDLDERLSGG-------VGADGGLVFVGTEK-GEVIALDAEDGKELWRAKLSSEV  137 (377)
T ss_pred             EEEEEC-CCCeEEEEEccCCcEeeeecCCCCcccc-------eEEcCCEEEEEcCC-CEEEEEECCCCcEeeeeccCcee
Confidence            466777 7899999999999988766543321111       22345666676666 99999999999888766554443


Q ss_pred             eEEEECCCCCEEEEecCCCcEEEEEccCcceeeeeccccCCeE-----EEEEccCCcEEEEeeCCCcEEEEeCCcccchh
Q 014475           84 KPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVT-----CLVFSEDGSFLISGSEDGCVRIWSLLTVFEEC  158 (424)
Q Consensus        84 ~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~-----~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~  158 (424)
                      .+.-.. .+..++.++.+|.|+.+|.++|+.+..++.......     +....  +..++.+..+|.+..+|.+++....
T Consensus       138 ~~~p~v-~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~--~~~v~~~~~~g~v~ald~~tG~~~W  214 (377)
T TIGR03300       138 LSPPLV-ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA--DGGVLVGFAGGKLVALDLQTGQPLW  214 (377)
T ss_pred             ecCCEE-ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE--CCEEEEECCCCEEEEEEccCCCEee
Confidence            321111 345677778899999999999998777654322111     11121  2467778888999999997754321


Q ss_pred             cccccccceEEeecCCcCcee-EEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeeecCcceeEEEECCCCCEEEEEe
Q 014475          159 ESQRASHLYLHSFTGHTLRIT-DIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGS  237 (424)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  237 (424)
                      ........-..... +...+. ...+  .+  ..++.++.+|.+..+|..+++.+........ ...  ...+..+++++
T Consensus       215 ~~~~~~~~g~~~~~-~~~~~~~~p~~--~~--~~vy~~~~~g~l~a~d~~tG~~~W~~~~~~~-~~p--~~~~~~vyv~~  286 (377)
T TIGR03300       215 EQRVALPKGRTELE-RLVDVDGDPVV--DG--GQVYAVSYQGRVAALDLRSGRVLWKRDASSY-QGP--AVDDNRLYVTD  286 (377)
T ss_pred             eeccccCCCCCchh-hhhccCCccEE--EC--CEEEEEEcCCEEEEEECCCCcEEEeeccCCc-cCc--eEeCCEEEEEC
Confidence            11000000000000 000000 0111  12  5777888899999999999988776653221 111  12567888889


Q ss_pred             CCCcEEEEEcCCCCCCCCCcCceeeeeecccCc-CeEEEEecCCCEEEEeCCCCcEEEEeCCCCcEEEEEeccCCCeeEE
Q 014475          238 RDGSIYIAALNAESPSTSSYGMHIIGSLSDHSK-AVTCLAYSTGDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNI  316 (424)
Q Consensus       238 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l  316 (424)
                      .+|.++.+|..+++..         -....... ........ ++.+++++.+|.|.++|..+++.+.+++.+..++..-
T Consensus       287 ~~G~l~~~d~~tG~~~---------W~~~~~~~~~~ssp~i~-g~~l~~~~~~G~l~~~d~~tG~~~~~~~~~~~~~~~s  356 (377)
T TIGR03300       287 ADGVVVALDRRSGSEL---------WKNDELKYRQLTAPAVV-GGYLVVGDFEGYLHWLSREDGSFVARLKTDGSGIASP  356 (377)
T ss_pred             CCCeEEEEECCCCcEE---------EccccccCCccccCEEE-CCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCccccC
Confidence            9999999999887421         11111111 11111111 7789999999999999999999999988766544333


Q ss_pred             EEEecCceeeeccCCCceeec
Q 014475          317 LVVRRPLYLNLGSFSNPHTSS  337 (424)
Q Consensus       317 ~~s~~~~~l~~~~~d~~i~iw  337 (424)
                      -...++ .|..++.||.|..+
T Consensus       357 p~~~~~-~l~v~~~dG~l~~~  376 (377)
T TIGR03300       357 PVVVGD-GLLVQTRDGDLYAF  376 (377)
T ss_pred             CEEECC-EEEEEeCCceEEEe
Confidence            333344 47788889988765

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.60  E-value=8e-14  Score=113.13  Aligned_cols=131  Identities=16%  Similarity=0.215  Sum_probs=99.5

Q ss_pred             cEEEEecCC-Cceeeeee--cCcceeEEEECCCCCEEEEE--eCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEE
Q 014475          200 TCKVWSLLK-GRLLRNIV--FPSVIDAIALDPAEHVFYAG--SRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTC  274 (424)
Q Consensus       200 ~v~iwd~~~-~~~~~~~~--~~~~i~~~~~~~~~~~l~~~--~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~  274 (424)
                      ...+|.++. ......+.  ..++|.+++|+|+++.|++.  ..++.+.+||++.          ..+..+  +...++.
T Consensus        38 ~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~~----------~~i~~~--~~~~~n~  105 (194)
T PF08662_consen   38 EFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVKG----------KKIFSF--GTQPRNT  105 (194)
T ss_pred             eEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEEcCcc----------cEeEee--cCCCceE
Confidence            355555532 23344444  44579999999999987654  4667999999973          344454  3467789


Q ss_pred             EEecC-CCEEEEeCC---CCcEEEEeCCCCcEEEEEeccCCCeeEEEEEecCceeeeccC------CCceeeccCCCCCC
Q 014475          275 LAYST-GDLLISGSE---DGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSF------SNPHTSSRRHGSQL  344 (424)
Q Consensus       275 ~~~~~-~~~l~t~~~---dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~------d~~i~iw~~~~~~~  344 (424)
                      +.|+| |++|++++.   .|.|.+||+++.+.+.... | ..++.++|+|||++|++++.      |..++||+..+..+
T Consensus       106 i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~-~-~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~G~~l  183 (194)
T PF08662_consen  106 ISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE-H-SDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQGRLL  183 (194)
T ss_pred             EEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc-c-CcEEEEEEcCCCCEEEEEEeccceeccccEEEEEecCeEe
Confidence            99999 999999874   4679999999999888876 3 34789999999999998764      78899999987654

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.60  E-value=1.5e-13  Score=111.59  Aligned_cols=150  Identities=13%  Similarity=0.172  Sum_probs=110.3

Q ss_pred             eEEEECCCCCEEEEecC----------CCcEEEEEccC-cceeeeecc-ccCCeEEEEEccCCcEEEEe--eCCCcEEEE
Q 014475           84 KPIAANSHGTYIAGGGQ----------SGDIYMWEVAS-GRLLKKWHA-HYRAVTCLVFSEDGSFLISG--SEDGCVRIW  149 (424)
Q Consensus        84 ~~~~~s~~~~~l~~~~~----------dg~v~iwd~~~-~~~~~~~~~-~~~~i~~~~~~~~~~~l~s~--~~dg~i~iw  149 (424)
                      ..+.|+|+|++|++-..          -|...+|.++. +.....+.. ..++|.+++|+|+++.|++.  ..++.|.+|
T Consensus         9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly   88 (194)
T PF08662_consen    9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY   88 (194)
T ss_pred             EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence            46789999988776433          13355665532 233444433 34579999999999987654  456799999


Q ss_pred             eCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCC---CcEEEEecCCCceeeeeecCcceeEEEE
Q 014475          150 SLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASED---RTCKVWSLLKGRLLRNIVFPSVIDAIAL  226 (424)
Q Consensus       150 d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d---~~v~iwd~~~~~~~~~~~~~~~i~~~~~  226 (424)
                      |++            ...+..+  +...++.+.|+|+|  +++++++.+   |.|.+||.++.+.+....+.. +..++|
T Consensus        89 d~~------------~~~i~~~--~~~~~n~i~wsP~G--~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~~~-~t~~~W  151 (194)
T PF08662_consen   89 DVK------------GKKIFSF--GTQPRNTISWSPDG--RFLVLAGFGNLNGDLEFWDVRKKKKISTFEHSD-ATDVEW  151 (194)
T ss_pred             cCc------------ccEeEee--cCCCceEEEECCCC--CEEEEEEccCCCcEEEEEECCCCEEeeccccCc-EEEEEE
Confidence            994            2233333  35677889999999  888887743   669999999988888877665 689999


Q ss_pred             CCCCCEEEEEeC------CCcEEEEEcCCC
Q 014475          227 DPAEHVFYAGSR------DGSIYIAALNAE  250 (424)
Q Consensus       227 ~~~~~~l~~~~~------dg~i~i~d~~~~  250 (424)
                      +|+|++++++..      |+.++||+....
T Consensus       152 sPdGr~~~ta~t~~r~~~dng~~Iw~~~G~  181 (194)
T PF08662_consen  152 SPDGRYLATATTSPRLRVDNGFKIWSFQGR  181 (194)
T ss_pred             cCCCCEEEEEEeccceeccccEEEEEecCe
Confidence            999999999874      678999998753

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=99.59  E-value=1.5e-12  Score=113.34  Aligned_cols=297  Identities=14%  Similarity=0.181  Sum_probs=188.2

Q ss_pred             EEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCceeeeecCCCCeeEEEECCCCCEE
Q 014475           16 GCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYI   95 (424)
Q Consensus        16 ~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l   95 (424)
                      ..|+..+...-..+..   ..-.+..+.  ++|.|.+|++...  ..|.+|.-....... ......|.-+.|+|+++||
T Consensus        15 ~f~~~~s~~~~~~~~~---~~~p~~~~~--~SP~G~~l~~~~~--~~V~~~~g~~~~~l~-~~~~~~V~~~~fSP~~kYL   86 (561)
T COG5354          15 VFWNSQSEVIHTRFES---ENWPVAYVS--ESPLGTYLFSEHA--AGVECWGGPSKAKLV-RFRHPDVKYLDFSPNEKYL   86 (561)
T ss_pred             EeecCccccccccccc---cCcchhhee--ecCcchheehhhc--cceEEccccchhhee-eeecCCceecccCccccee
Confidence            4566555444443432   223355555  9999999999887  589999987776433 3444678999999999999


Q ss_pred             EEecCCC---------------cEEEEEccCcceeeeeccccCC--eE-EEEEccCCcEEEEeeCCCcEEEEeCCcccch
Q 014475           96 AGGGQSG---------------DIYMWEVASGRLLKKWHAHYRA--VT-CLVFSEDGSFLISGSEDGCVRIWSLLTVFEE  157 (424)
Q Consensus        96 ~~~~~dg---------------~v~iwd~~~~~~~~~~~~~~~~--i~-~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~  157 (424)
                      .+=...+               .+.+||+.+|..+..+.....+  .. -+.|+-++++++-... ..++++++..... 
T Consensus        87 ~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv~-~sl~i~e~t~n~~-  164 (561)
T COG5354          87 VTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVVG-SSLYIHEITDNIE-  164 (561)
T ss_pred             eeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhhcc-CeEEEEecCCccc-
Confidence            9865433               4999999999999988776655  55 6888888887765533 3689998622111 


Q ss_pred             hcccccccceEEeecCCcCceeEEEEEEcCceeEEEE-----EeCCCcEEEEecCCCcee--------------------
Q 014475          158 CESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVS-----ASEDRTCKVWSLLKGRLL--------------------  212 (424)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~-----~~~d~~v~iwd~~~~~~~--------------------  212 (424)
                             ..+.+.+  ....|....++|.+++..|+.     .+.++.+++|.+..+..+                    
T Consensus       165 -------~~p~~~l--r~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~  235 (561)
T COG5354         165 -------EHPFKNL--RPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGK  235 (561)
T ss_pred             -------cCchhhc--cccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCc
Confidence                   0001111  123344444444433233322     223344444444322221                    


Q ss_pred             ---------------------------------eeeecCcceeEEEECCCCCEEEEE--eCCCcEEEEEcCCCCCCCCCc
Q 014475          213 ---------------------------------RNIVFPSVIDAIALDPAEHVFYAG--SRDGSIYIAALNAESPSTSSY  257 (424)
Q Consensus       213 ---------------------------------~~~~~~~~i~~~~~~~~~~~l~~~--~~dg~i~i~d~~~~~~~~~~~  257 (424)
                                                       ......++|...+|.|.++.+++.  -.+-.+.++|++.+-      
T Consensus       236 ~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~Nl------  309 (561)
T COG5354         236 YLLVLVMTHTKSNKSYFGESNLYLLRITERSIPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGNL------  309 (561)
T ss_pred             eEEEEEEEeeecccceeccceEEEEeecccccceeccccccceeeeecccCCceeEEecccccceeecccccce------
Confidence                                             111234567777787776665553  356677777777641      


Q ss_pred             CceeeeeecccCcCeEEEEecC-CCEEEEeCCC---CcEEEEeCCCCcEEE-EEeccCCCeeEEEEEecCceeeecc---
Q 014475          258 GMHIIGSLSDHSKAVTCLAYST-GDLLISGSED---GMVRVWDPITHNIVR-MFRLAKGPVNNILVVRRPLYLNLGS---  329 (424)
Q Consensus       258 ~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~d---g~i~iwd~~~~~~~~-~~~~~~~~v~~l~~s~~~~~l~~~~---  329 (424)
                            .+......=+.+.|+| +++++.++-|   |.+-+||......+. .+.+.  ..+-+.|+||++++.+..   
T Consensus       310 ------~~~~Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~--n~s~~~wspd~qF~~~~~ts~  381 (561)
T COG5354         310 ------RFYFPEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGL--NTSYCDWSPDGQFYDTDTTSE  381 (561)
T ss_pred             ------EEecCCcccccccccCcccEEEEecCCccccceEEeccCCceEEEEEeecC--CceEeeccCCceEEEecCCCc
Confidence                  2222344456678999 9999988765   679999987654444 55543  346678999999987653   


Q ss_pred             ---CCCceeeccCCCCCCC
Q 014475          330 ---FSNPHTSSRRHGSQLP  345 (424)
Q Consensus       330 ---~d~~i~iw~~~~~~~~  345 (424)
                         .|..+.+|++.+.+.+
T Consensus       382 k~~~Dn~i~l~~v~g~~~f  400 (561)
T COG5354         382 KLRVDNSIKLWDVYGAKVF  400 (561)
T ss_pred             ccccCcceEEEEecCchhh
Confidence               5778999999988775

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.59  E-value=2.9e-11  Score=105.56  Aligned_cols=262  Identities=10%  Similarity=0.003  Sum_probs=173.3

Q ss_pred             CceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCC---------CceeEEEEECCCCceeeeecCCC--
Q 014475           13 TGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSA---------SSGSILYWSWSKPQVEVKSLPAE--   81 (424)
Q Consensus        13 g~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~---------~~g~i~vwd~~~~~~~~~~~~~~--   81 (424)
                      ++|.+.|..+++.+.++.....+. .+      ++||++.+.++..         ++..|.+||..+.+.........  
T Consensus        27 ~~v~ViD~~~~~v~g~i~~G~~P~-~~------~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p   99 (352)
T TIGR02658        27 TQVYTIDGEAGRVLGMTDGGFLPN-PV------VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGP   99 (352)
T ss_pred             ceEEEEECCCCEEEEEEEccCCCc-ee------ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCc
Confidence            899999999999999987665433 22      6799999998888         77999999999988765544322  


Q ss_pred             ------CeeEEEECCCCCEEEEecC--CCcEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCc
Q 014475           82 ------PIKPIAANSHGTYIAGGGQ--SGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLT  153 (424)
Q Consensus        82 ------~v~~~~~s~~~~~l~~~~~--dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~  153 (424)
                            ....++++|||++|++...  +..|.+.|+.+++.+.++.... ...-...+++.. + +-+.||......+.+
T Consensus       100 ~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~-~~~vy~t~e~~~-~-~~~~Dg~~~~v~~d~  176 (352)
T TIGR02658       100 RFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPD-CYHIFPTANDTF-F-MHCRDGSLAKVGYGT  176 (352)
T ss_pred             hhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCC-CcEEEEecCCcc-E-EEeecCceEEEEecC
Confidence                  3348899999999997763  6889999999999988876422 222222322222 2 223455555544433


Q ss_pred             ccchhcccccccceEEeecC-----CcCceeEEEEEE-cCceeEEEEEeCCCcEEEEecCCC-----ceeeeee------
Q 014475          154 VFEECESQRASHLYLHSFTG-----HTLRITDIVIGY-GGVSATIVSASEDRTCKVWSLLKG-----RLLRNIV------  216 (424)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~-----~~~~i~~~~~~~-~~~~~~l~~~~~d~~v~iwd~~~~-----~~~~~~~------  216 (424)
                      .....      ......+..     ...+    .+.+ ++  .+++...+ |.|.+.|+...     +....+.      
T Consensus       177 ~g~~~------~~~~~vf~~~~~~v~~rP----~~~~~dg--~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~  243 (352)
T TIGR02658       177 KGNPK------IKPTEVFHPEDEYLINHP----AYSNKSG--RLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKAD  243 (352)
T ss_pred             CCceE------EeeeeeecCCccccccCC----ceEcCCC--cEEEEecC-CeEEEEecCCCcceecceeeecccccccc
Confidence            11100      000001111     0112    3445 44  56666665 99999996432     2222221      


Q ss_pred             --cCcceeEEEECCCCCEEEEEeC----------CCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CC-E
Q 014475          217 --FPSVIDAIALDPAEHVFYAGSR----------DGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GD-L  282 (424)
Q Consensus       217 --~~~~i~~~~~~~~~~~l~~~~~----------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~-~  282 (424)
                        .+....-++++|+++.+++...          .+.|.++|..+.         +.+..+.. ...+..++++| ++ +
T Consensus       244 ~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~---------kvi~~i~v-G~~~~~iavS~Dgkp~  313 (352)
T TIGR02658       244 GWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTG---------KRLRKIEL-GHEIDSINVSQDAKPL  313 (352)
T ss_pred             ccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCC---------eEEEEEeC-CCceeeEEECCCCCeE
Confidence              2344556999999999888531          247999999886         44544442 45788999999 77 7


Q ss_pred             EEEeC-CCCcEEEEeCCCCcEEEEEe
Q 014475          283 LISGS-EDGMVRVWDPITHNIVRMFR  307 (424)
Q Consensus       283 l~t~~-~dg~i~iwd~~~~~~~~~~~  307 (424)
                      |++.. .++.|.+.|..+++.++++.
T Consensus       314 lyvtn~~s~~VsViD~~t~k~i~~i~  339 (352)
T TIGR02658       314 LYALSTGDKTLYIFDAETGKELSSVN  339 (352)
T ss_pred             EEEeCCCCCcEEEEECcCCeEEeeec
Confidence            76665 67889999999999999983

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.58  E-value=3.6e-11  Score=107.76  Aligned_cols=288  Identities=16%  Similarity=0.206  Sum_probs=181.2

Q ss_pred             CceEEEeC--CCCceEEEeeCCCCCCCceEEecceeecCCCccccCCC---CceeEEEEECCCC--ceeee---ecCCCC
Q 014475           13 TGIGCWDL--ESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSA---SSGSILYWSWSKP--QVEVK---SLPAEP   82 (424)
Q Consensus        13 g~i~vwd~--~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~---~~g~i~vwd~~~~--~~~~~---~~~~~~   82 (424)
                      +.|.+|++  ++++... ... .........++  ++|++++|.++..   ++|.|..|++...  ++...   ......
T Consensus        13 ~gI~~~~~d~~~g~l~~-~~~-~~~~~~Ps~l~--~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~   88 (345)
T PF10282_consen   13 GGIYVFRFDEETGTLTL-VQT-VAEGENPSWLA--VSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSS   88 (345)
T ss_dssp             TEEEEEEEETTTTEEEE-EEE-EEESSSECCEE--E-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSC
T ss_pred             CcEEEEEEcCCCCCceE-eee-ecCCCCCceEE--EEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCC
Confidence            78999998  5555432 221 11223345556  8999999988866   3589999998764  33221   124566


Q ss_pred             eeEEEECCCCCEEEEec-CCCcEEEEEccC-cceeee---ec----------cccCCeEEEEEccCCcEEEEeeC-CCcE
Q 014475           83 IKPIAANSHGTYIAGGG-QSGDIYMWEVAS-GRLLKK---WH----------AHYRAVTCLVFSEDGSFLISGSE-DGCV  146 (424)
Q Consensus        83 v~~~~~s~~~~~l~~~~-~dg~v~iwd~~~-~~~~~~---~~----------~~~~~i~~~~~~~~~~~l~s~~~-dg~i  146 (424)
                      ...++++|++++|+++. .+|.|.++++.. +.....   +.          .......++.|+|+++++++... ...|
T Consensus        89 p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v  168 (345)
T PF10282_consen   89 PCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRV  168 (345)
T ss_dssp             EEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEE
T ss_pred             cEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEE
Confidence            77899999999999886 478999999976 333222   11          12356789999999998887643 3479


Q ss_pred             EEEeCCcccchhcccccccceEEee-cCCcCceeEEEEEEcCceeEE-EEEeCCCcEEEEecC--CCce--eeeee-c--
Q 014475          147 RIWSLLTVFEECESQRASHLYLHSF-TGHTLRITDIVIGYGGVSATI-VSASEDRTCKVWSLL--KGRL--LRNIV-F--  217 (424)
Q Consensus       147 ~iwd~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~l-~~~~~d~~v~iwd~~--~~~~--~~~~~-~--  217 (424)
                      .+|++......       ......+ .........+.|+|++  +++ ++.-.++.|.++++.  ++..  +..+. .  
T Consensus       169 ~~~~~~~~~~~-------l~~~~~~~~~~G~GPRh~~f~pdg--~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~  239 (345)
T PF10282_consen  169 YVYDIDDDTGK-------LTPVDSIKVPPGSGPRHLAFSPDG--KYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPE  239 (345)
T ss_dssp             EEEEE-TTS-T-------EEEEEEEECSTTSSEEEEEE-TTS--SEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCET
T ss_pred             EEEEEeCCCce-------EEEeeccccccCCCCcEEEEcCCc--CEEEEecCCCCcEEEEeecccCCceeEEEEeeeccc
Confidence            99998653211       1111111 2344566889999998  555 455567889999988  4322  22222 1  


Q ss_pred             ----CcceeEEEECCCCCEEEEEe-CCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeC-CCC
Q 014475          218 ----PSVIDAIALDPAEHVFYAGS-RDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGS-EDG  290 (424)
Q Consensus       218 ----~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~-~dg  290 (424)
                          ......+.++|+|++|+++. ..+.|.+|+++.....     ...+............++++| +++|+++. .++
T Consensus       240 ~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~-----l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~  314 (345)
T PF10282_consen  240 GFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGT-----LTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSN  314 (345)
T ss_dssp             TSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTT-----EEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTT
T ss_pred             cccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCc-----eEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCC
Confidence                12577899999999998876 4568999999543211     244444544455689999999 88888776 567


Q ss_pred             cEEEEeC--CCCcEEEEEe-ccCCCeeEEEE
Q 014475          291 MVRVWDP--ITHNIVRMFR-LAKGPVNNILV  318 (424)
Q Consensus       291 ~i~iwd~--~~~~~~~~~~-~~~~~v~~l~~  318 (424)
                      .|.+|++  .+|.+...-. ..-....|+.|
T Consensus       315 ~v~vf~~d~~tG~l~~~~~~~~~~~p~ci~f  345 (345)
T PF10282_consen  315 TVSVFDIDPDTGKLTPVGSSVPIPSPVCIVF  345 (345)
T ss_dssp             EEEEEEEETTTTEEEEEEEEEESSSEEEEEE
T ss_pred             eEEEEEEeCCCCcEEEecccccCCCCEEEeC
Confidence            8999866  5666554432 22334455554

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.57  E-value=2.7e-13  Score=112.20  Aligned_cols=259  Identities=18%  Similarity=0.268  Sum_probs=177.1

Q ss_pred             CCCCeeEEEECCCCCEEEEecCCCcEEEEEccCcc-----eeeeecccc------------CCeEEEEEccCC--cEEEE
Q 014475           79 PAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGR-----LLKKWHAHY------------RAVTCLVFSEDG--SFLIS  139 (424)
Q Consensus        79 ~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~-----~~~~~~~~~------------~~i~~~~~~~~~--~~l~s  139 (424)
                      ..+-|.++.|...|.+||+|..+|.|.++.-+...     ....++.|.            ..|+.+.|.+++  ..++.
T Consensus        24 eadiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLl  103 (433)
T KOG1354|consen   24 EADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLL  103 (433)
T ss_pred             hhcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEE
Confidence            45678999999999999999999999999754322     223344443            468899998854  46777


Q ss_pred             eeCCCcEEEEeCCcccchhcc-------cc-----------------cccceEEe-ecCCcCceeEEEEEEcCceeEEEE
Q 014475          140 GSEDGCVRIWSLLTVFEECES-------QR-----------------ASHLYLHS-FTGHTLRITDIVIGYGGVSATIVS  194 (424)
Q Consensus       140 ~~~dg~i~iwd~~~~~~~~~~-------~~-----------------~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~l~~  194 (424)
                      .+.|.+|++|.+.........       ..                 ....+.+. -..|.--|+++.++.+.  ..+++
T Consensus       104 stNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~--Et~lS  181 (433)
T KOG1354|consen  104 STNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDK--ETFLS  181 (433)
T ss_pred             ecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCcc--ceEee
Confidence            889999999998653221100       00                 00001111 14577889999998887  56665


Q ss_pred             EeCCCcEEEEecCCCceeeeee---------cCcceeEEEECCC-CCEEEEEeCCCcEEEEEcCCCCCCCC-------Cc
Q 014475          195 ASEDRTCKVWSLLKGRLLRNIV---------FPSVIDAIALDPA-EHVFYAGSRDGSIYIAALNAESPSTS-------SY  257 (424)
Q Consensus       195 ~~~d~~v~iwd~~~~~~~~~~~---------~~~~i~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~-------~~  257 (424)
                      + .|=.|.+|++.-......+.         ....|++..|+|. .+.++-.+..|+|++-|++.......       +.
T Consensus       182 A-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepe  260 (433)
T KOG1354|consen  182 A-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPE  260 (433)
T ss_pred             c-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhcccc
Confidence            5 47789999987443322221         2346889999994 56777788999999999995432111       00


Q ss_pred             CceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeC-CCCcEEEEEeccCC---------------CeeEEEEEe
Q 014475          258 GMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDP-ITHNIVRMFRLAKG---------------PVNNILVVR  320 (424)
Q Consensus       258 ~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~-~~~~~~~~~~~~~~---------------~v~~l~~s~  320 (424)
                      ......-+..--..|..+.|++ |+++++-+. -+|++||+ ...+++.+++.|..               .-..++|+-
T Consensus       261 dp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg  339 (433)
T KOG1354|consen  261 DPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSG  339 (433)
T ss_pred             CCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcC
Confidence            1111112223346688899999 899988754 57999999 46778888876653               124578999


Q ss_pred             cCceeeeccCCCceeeccCCC
Q 014475          321 RPLYLNLGSFSNPHTSSRRHG  341 (424)
Q Consensus       321 ~~~~l~~~~~d~~i~iw~~~~  341 (424)
                      ++.++++|+.....++++...
T Consensus       340 ~~~~v~TGsy~n~frvf~~~~  360 (433)
T KOG1354|consen  340 NDSYVMTGSYNNVFRVFNLAR  360 (433)
T ss_pred             CcceEecccccceEEEecCCC
Confidence            999999999999999999543

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.57  E-value=2.9e-12  Score=120.66  Aligned_cols=187  Identities=20%  Similarity=0.226  Sum_probs=146.7

Q ss_pred             EEEeecCCCCCceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCceee-eecCCC
Q 014475            3 LLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEV-KSLPAE   81 (424)
Q Consensus         3 ~~lat~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~-~~~~~~   81 (424)
                      ..++... .+..+-+||...+.....+.... ...-..++-.-++++.-++++++.. +.|.+|+....+... ...|.+
T Consensus       100 k~i~l~~-~~ns~~i~d~~~~~~~~~i~~~e-r~~l~~~~~~g~s~~~~~i~~gsv~-~~iivW~~~~dn~p~~l~GHeG  176 (967)
T KOG0974|consen  100 KKIALVT-SRNSLLIRDSKNSSVLSKIQSDE-RCTLYSSLIIGDSAEELYIASGSVF-GEIIVWKPHEDNKPIRLKGHEG  176 (967)
T ss_pred             ceEEEEE-cCceEEEEecccCceehhcCCCc-eEEEEeEEEEeccCcEEEEEecccc-ccEEEEeccccCCcceecccCC
Confidence            4566666 77899999998877776654322 1111112222366777788888887 999999987544444 678999


Q ss_pred             CeeEEEECCCCCEEEEecCCCcEEEEEccCcceee-eeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcc
Q 014475           82 PIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLK-KWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECES  160 (424)
Q Consensus        82 ~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~-~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~  160 (424)
                      .|..+.++.||.++++.++|.++++|++++.+... ..-+|...|..++|.|+  .+++++.|.+.++|+.+.       
T Consensus       177 ~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~~~-------  247 (967)
T KOG0974|consen  177 SIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--RIITVGEDCTCRVWGVNG-------  247 (967)
T ss_pred             ceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc--eeEEeccceEEEEEeccc-------
Confidence            99999999999999999999999999999988776 66789999999999988  899999999999997633       


Q ss_pred             cccccceEEeecCCc-CceeEEEEEEcCceeEEEEEeCCCcEEEEecCC
Q 014475          161 QRASHLYLHSFTGHT-LRITDIVIGYGGVSATIVSASEDRTCKVWSLLK  208 (424)
Q Consensus       161 ~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~  208 (424)
                           ..+..+.+|. ..|..++..+..  ...+|++.|+.+++||+..
T Consensus       248 -----~~l~~y~~h~g~~iw~~~~~~~~--~~~vT~g~Ds~lk~~~l~~  289 (967)
T KOG0974|consen  248 -----TQLEVYDEHSGKGIWKIAVPIGV--IIKVTGGNDSTLKLWDLNG  289 (967)
T ss_pred             -----ceehhhhhhhhcceeEEEEcCCc--eEEEeeccCcchhhhhhhc
Confidence                 2233566664 468888888777  8899999999999999753

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.57  E-value=7.1e-13  Score=116.89  Aligned_cols=277  Identities=11%  Similarity=0.151  Sum_probs=185.7

Q ss_pred             eEEEeecCCCCCceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCceeeeecCCC
Q 014475            2 ELLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSLPAE   81 (424)
Q Consensus         2 e~~lat~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~~~~~~   81 (424)
                      +.+||||. ---.|++||+..-.+.  +..|... ..|...-  .+.|-..++.-..| .+|.+..........+  -+.
T Consensus        64 qY~lAtG~-YKP~ikvydlanLSLK--FERhlDa-e~V~fei--LsDD~SK~v~L~~D-R~IefHak~G~hy~~R--IP~  134 (703)
T KOG2321|consen   64 QYLLATGT-YKPQIKVYDLANLSLK--FERHLDA-EVVDFEI--LSDDYSKSVFLQND-RTIEFHAKYGRHYRTR--IPK  134 (703)
T ss_pred             cEEEEecc-cCCceEEEEcccceee--eeecccc-cceeEEE--eccchhhheEeecC-ceeeehhhcCeeeeee--cCc
Confidence            36789999 8889999999865443  3333221 2344333  44454444444444 6666554322222111  223


Q ss_pred             CeeEEEECC-CCCEEEEecCCCcEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcc
Q 014475           82 PIKPIAANS-HGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECES  160 (424)
Q Consensus        82 ~v~~~~~s~-~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~  160 (424)
                      .-..++++. +..++++ +....|+-++++.|..+..+....+.++++..++...+|++|+.+|.|-.||.++.......
T Consensus       135 ~GRDm~y~~~scDly~~-gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l  213 (703)
T KOG2321|consen  135 FGRDMKYHKPSCDLYLV-GSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTL  213 (703)
T ss_pred             CCccccccCCCccEEEe-ecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecchhhhhheee
Confidence            345566654 3344444 44457999999999999999888899999999998889999999999999999774332222


Q ss_pred             cccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeeec--CcceeEEEECCCC-CEEEEEe
Q 014475          161 QRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVF--PSVIDAIALDPAE-HVFYAGS  237 (424)
Q Consensus       161 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~--~~~i~~~~~~~~~-~~l~~~~  237 (424)
                      .................|+++.|..+|  -.+++|+.+|.+.|||+++.+++..-.|  .-+|..+.|.+.+ .--++..
T Consensus       214 ~~~~~v~s~pg~~~~~svTal~F~d~g--L~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~  291 (703)
T KOG2321|consen  214 DAASSVNSHPGGDAAPSVTALKFRDDG--LHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVSM  291 (703)
T ss_pred             ecccccCCCccccccCcceEEEecCCc--eeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccCCCceEEec
Confidence            111111001111122349999999887  8999999999999999999988877665  4678899997752 3334445


Q ss_pred             CCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCCC
Q 014475          238 RDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITH  300 (424)
Q Consensus       238 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~  300 (424)
                      ....++|||-.++.+         ..... ....++.+++-| +.+++++-.++.+..|=+..-
T Consensus       292 Dk~~~kiWd~~~Gk~---------~asiE-pt~~lND~C~~p~sGm~f~Ane~~~m~~yyiP~L  345 (703)
T KOG2321|consen  292 DKRILKIWDECTGKP---------MASIE-PTSDLNDFCFVPGSGMFFTANESSKMHTYYIPSL  345 (703)
T ss_pred             chHHhhhcccccCCc---------eeecc-ccCCcCceeeecCCceEEEecCCCcceeEEcccc
Confidence            567899999999852         22332 334588899989 889999988888877766543

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.57  E-value=1.6e-12  Score=120.52  Aligned_cols=231  Identities=18%  Similarity=0.161  Sum_probs=151.3

Q ss_pred             eeEEEEECCCCceeeeecCCCCeeEEEECCCCCEEEEecCC---CcEEEEEccCcceeeeeccccCCeEEEEEccCCcEE
Q 014475           61 GSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQS---GDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFL  137 (424)
Q Consensus        61 g~i~vwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---g~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l  137 (424)
                      ..|.++|.+.........+...+...+|+|||++|+.+..+   ..|++||+.+++... +..+...+.++.|+|+++.|
T Consensus       170 ~~l~~~d~~g~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~-~~~~~~~~~~~~~spDg~~l  248 (417)
T TIGR02800       170 YELQVADYDGANPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK-VASFPGMNGAPAFSPDGSKL  248 (417)
T ss_pred             ceEEEEcCCCCCCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEE
Confidence            57888888766555555566789999999999999887643   479999998876543 33355567789999999877


Q ss_pred             EE-eeCCC--cEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeC-CC--cEEEEecCCCce
Q 014475          138 IS-GSEDG--CVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASE-DR--TCKVWSLLKGRL  211 (424)
Q Consensus       138 ~s-~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~-d~--~v~iwd~~~~~~  211 (424)
                      +. .+.++  .|++||+.++.            ...+..+........|++++  +.|+..+. ++  .|.++|+.+++.
T Consensus       249 ~~~~~~~~~~~i~~~d~~~~~------------~~~l~~~~~~~~~~~~s~dg--~~l~~~s~~~g~~~iy~~d~~~~~~  314 (417)
T TIGR02800       249 AVSLSKDGNPDIYVMDLDGKQ------------LTRLTNGPGIDTEPSWSPDG--KSIAFTSDRGGSPQIYMMDADGGEV  314 (417)
T ss_pred             EEEECCCCCccEEEEECCCCC------------EEECCCCCCCCCCEEECCCC--CEEEEEECCCCCceEEEEECCCCCE
Confidence            64 44444  58888886521            12233344444566888887  66655543 33  577888877765


Q ss_pred             eeeeecCcceeEEEECCCCCEEEEEeCCC---cEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeC
Q 014475          212 LRNIVFPSVIDAIALDPAEHVFYAGSRDG---SIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGS  287 (424)
Q Consensus       212 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~  287 (424)
                      ..............|+|++++++.++.++   .|.+||+.++..       .   .+... .......|+| ++.|+..+
T Consensus       315 ~~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~-------~---~l~~~-~~~~~p~~spdg~~l~~~~  383 (417)
T TIGR02800       315 RRLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGE-------R---VLTDT-GLDESPSFAPNGRMILYAT  383 (417)
T ss_pred             EEeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCe-------E---EccCC-CCCCCceECCCCCEEEEEE
Confidence            43333556677889999999999888775   788888877431       1   11111 1234457899 87777766


Q ss_pred             CCC---cEEEEeCCCCcEEEEEeccCCCeeEEEE
Q 014475          288 EDG---MVRVWDPITHNIVRMFRLAKGPVNNILV  318 (424)
Q Consensus       288 ~dg---~i~iwd~~~~~~~~~~~~~~~~v~~l~~  318 (424)
                      .++   .+.+.+. +++....+..+.+.+..+.|
T Consensus       384 ~~~~~~~l~~~~~-~g~~~~~~~~~~g~~~~~~w  416 (417)
T TIGR02800       384 TRGGRGVLGLVST-DGRFRARLPLGNGDVREPAW  416 (417)
T ss_pred             eCCCcEEEEEEEC-CCceeeECCCCCCCcCCCCC
Confidence            543   3555553 45555656544555555444

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.56  E-value=6.9e-13  Score=107.58  Aligned_cols=270  Identities=17%  Similarity=0.159  Sum_probs=180.0

Q ss_pred             CCceEEEeCCCCceEE--EeeCCCCCCCceEEecceee---cCCC-ccccCCCCceeEEEEECCCCceeeee--c-----
Q 014475           12 DTGIGCWDLESGAEQL--RYKSCASPPHGLACVGQRFL---ASSQ-LREQPSASSGSILYWSWSKPQVEVKS--L-----   78 (424)
Q Consensus        12 dg~i~vwd~~~~~~~~--~~~~~~~~~~~v~~~~~~~~---~~~~-~l~~~~~~~g~i~vwd~~~~~~~~~~--~-----   78 (424)
                      -|.+.++++...+...  +++..  ....+..+.  |.   .+|. .++-+... |.|.++.....+.....  .     
T Consensus        45 ~Gkl~Lys~~d~~~~~l~~~q~~--dts~~~dm~--w~~~~~~g~~~l~~a~a~-G~i~~~r~~~~~ss~~L~~ls~~ki  119 (339)
T KOG0280|consen   45 SGKLHLYSLEDMKLSPLDTLQCT--DTSTEFDML--WRIRETDGDFNLLDAHAR-GQIQLYRNDEDESSVHLRGLSSKKI  119 (339)
T ss_pred             ccceEEEeecccccCccceeeee--cccccceee--eeeccCCccceeeecccc-ceEEEEeeccceeeeeecccchhhh
Confidence            3678888887665543  11110  001122222  22   2333 34445555 99999987644322111  1     


Q ss_pred             CCCCeeEEEECCCCCEEEEecCCCcEEEEEccCcce--eeeeccccCCeEEEEEcc-CCcEEEEeeCCCcEEEEeCCccc
Q 014475           79 PAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRL--LKKWHAHYRAVTCLVFSE-DGSFLISGSEDGCVRIWSLLTVF  155 (424)
Q Consensus        79 ~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~--~~~~~~~~~~i~~~~~~~-~~~~l~s~~~dg~i~iwd~~~~~  155 (424)
                      ......++.|++.+..++++..+|.+.+-+......  .+.++.|.-+++-..|+. +.+.+.+|+.|+.+..||++-  
T Consensus       120 ~~~~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~--  197 (339)
T KOG0280|consen  120 SVVEALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRI--  197 (339)
T ss_pred             hheeeeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecC--
Confidence            112356888999999999999999999666555544  347899999999999976 567889999999999999973  


Q ss_pred             chhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecC-CCceeeeeecCcceeEEEECCCC-CEE
Q 014475          156 EECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLL-KGRLLRNIVFPSVIDAIALDPAE-HVF  233 (424)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~-~~~~~~~~~~~~~i~~~~~~~~~-~~l  233 (424)
                             ++...-+..+.|...|.++.-+|..+ .++++|+.|..|++||.+ -++++..-...+.|..+.++|.- ..+
T Consensus       198 -------p~~~i~~n~kvH~~GV~SI~ss~~~~-~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~GGVWRi~~~p~~~~~l  269 (339)
T KOG0280|consen  198 -------PKTFIWHNSKVHTSGVVSIYSSPPKP-TYIATGSYDECIRVLDTRNMGKPLFKAKVGGGVWRIKHHPEIFHRL  269 (339)
T ss_pred             -------CcceeeecceeeecceEEEecCCCCC-ceEEEeccccceeeeehhcccCccccCccccceEEEEecchhhhHH
Confidence                   22222233567899999998887643 899999999999999999 57777777788999999999943 334


Q ss_pred             EEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeC-CCCcEE-EEeCCCC
Q 014475          234 YAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGS-EDGMVR-VWDPITH  300 (424)
Q Consensus       234 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~-~dg~i~-iwd~~~~  300 (424)
                      ++++.-+-.++-+........    .......+.|..-...-.|.. ..+|+|++ .|..++ +|-.-++
T Consensus       270 L~~CMh~G~ki~~~~~~~~e~----~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t~  335 (339)
T KOG0280|consen  270 LAACMHNGAKILDSSDKVLEF----QIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWLHITG  335 (339)
T ss_pred             HHHHHhcCceEEEecccccch----heeeeccccccceeeccccccccceeeeeeccccceeeeeeeccC
Confidence            444444457777776654220    013344556777777777765 67788876 466644 6655444

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.56  E-value=1.2e-12  Score=106.30  Aligned_cols=262  Identities=10%  Similarity=0.077  Sum_probs=181.0

Q ss_pred             eeEEEEECCCCceee----eecCCCCeeEEEECC---CCC-EEEEecCCCcEEEEEccCcceeeeecccc------CCeE
Q 014475           61 GSILYWSWSKPQVEV----KSLPAEPIKPIAANS---HGT-YIAGGGQSGDIYMWEVASGRLLKKWHAHY------RAVT  126 (424)
Q Consensus        61 g~i~vwd~~~~~~~~----~~~~~~~v~~~~~s~---~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~------~~i~  126 (424)
                      |.+.++++...+...    .......+..+.|.-   +|. .++-+..+|.|.++..........+++-.      ....
T Consensus        46 Gkl~Lys~~d~~~~~l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~l  125 (339)
T KOG0280|consen   46 GKLHLYSLEDMKLSPLDTLQCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEAL  125 (339)
T ss_pred             cceEEEeecccccCccceeeeecccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheeee
Confidence            889999987655332    223355667777753   454 56667788999999876554444443211      1345


Q ss_pred             EEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEec
Q 014475          127 CLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSL  206 (424)
Q Consensus       127 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~  206 (424)
                      ++.|++.+..++++..+|.+.+-+...         .....++.++.|+..++...|+...+ +.+.+|+.|+.+..||+
T Consensus       126 slD~~~~~~~i~vs~s~G~~~~v~~t~---------~~le~vq~wk~He~E~Wta~f~~~~p-nlvytGgDD~~l~~~D~  195 (339)
T KOG0280|consen  126 SLDISTSGTKIFVSDSRGSISGVYETE---------MVLEKVQTWKVHEFEAWTAKFSDKEP-NLVYTGGDDGSLSCWDI  195 (339)
T ss_pred             EEEeeccCceEEEEcCCCcEEEEecce---------eeeeecccccccceeeeeeecccCCC-ceEEecCCCceEEEEEe
Confidence            778888888899999999998555432         22334457889999999999987765 89999999999999999


Q ss_pred             CC-Cceeee--eecCcceeEEEECC-CCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC---
Q 014475          207 LK-GRLLRN--IVFPSVIDAIALDP-AEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST---  279 (424)
Q Consensus       207 ~~-~~~~~~--~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---  279 (424)
                      +. ++.+..  ..|...|.++.-+| .+.++++|+.|-.|++||.++..        +++..-. -.+.|..+.++|   
T Consensus       196 R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~--------kPl~~~~-v~GGVWRi~~~p~~~  266 (339)
T KOG0280|consen  196 RIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMG--------KPLFKAK-VGGGVWRIKHHPEIF  266 (339)
T ss_pred             cCCcceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhccc--------CccccCc-cccceEEEEecchhh
Confidence            93 333333  22778888988887 68899999999999999999754        3332222 338899999999   


Q ss_pred             CCEEEEeCCCCcEEEEeCCCC--c---EEEEEeccCCCeeEEEEEecCceeeecc-CCCcee-eccCCCC
Q 014475          280 GDLLISGSEDGMVRVWDPITH--N---IVRMFRLAKGPVNNILVVRRPLYLNLGS-FSNPHT-SSRRHGS  342 (424)
Q Consensus       280 ~~~l~t~~~dg~i~iwd~~~~--~---~~~~~~~~~~~v~~l~~s~~~~~l~~~~-~d~~i~-iw~~~~~  342 (424)
                      +..|+++-.+| .+|-+.+.+  +   .....+.|.+-+..-.|.....+||+++ .|+.++ +|-.-++
T Consensus       267 ~~lL~~CMh~G-~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t~  335 (339)
T KOG0280|consen  267 HRLLAACMHNG-AKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWLHITG  335 (339)
T ss_pred             hHHHHHHHhcC-ceEEEecccccchheeeeccccccceeeccccccccceeeeeeccccceeeeeeeccC
Confidence            44566665555 677776544  2   3345556777677777755556788755 666644 7754433

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.56  E-value=7.3e-11  Score=99.16  Aligned_cols=286  Identities=14%  Similarity=0.200  Sum_probs=189.1

Q ss_pred             CeEEEeecCCC---CCceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCCC--ceeEEEEECCC--Cce
Q 014475            1 MELLIASSSVA---DTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSAS--SGSILYWSWSK--PQV   73 (424)
Q Consensus         1 ~e~~lat~~~~---dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~--~g~i~vwd~~~--~~~   73 (424)
                      |...+..|++.   ++.|.+|++.+..-.......-......+.++  ++|+++.|.++..+  .|.|..|.++.  ++.
T Consensus         1 m~~~~YiGtyT~~~s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~--~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~L   78 (346)
T COG2706           1 MKQTVYIGTYTKRESQGIYVFNLDTKTGELSLLQLVAELGNPTYLA--VNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRL   78 (346)
T ss_pred             CceEEEEeeecccCCCceEEEEEeCcccccchhhhccccCCCceEE--ECCCCCEEEEEEecCCcCcEEEEEEcCCCCeE
Confidence            33344455434   67899999984433333333334456677778  99999999888665  58898888875  454


Q ss_pred             eeee---cCCCCeeEEEECCCCCEEEEecC-CCcEEEEEccC-cceeee--eccccCC----------eEEEEEccCCcE
Q 014475           74 EVKS---LPAEPIKPIAANSHGTYIAGGGQ-SGDIYMWEVAS-GRLLKK--WHAHYRA----------VTCLVFSEDGSF  136 (424)
Q Consensus        74 ~~~~---~~~~~v~~~~~s~~~~~l~~~~~-dg~v~iwd~~~-~~~~~~--~~~~~~~----------i~~~~~~~~~~~  136 (424)
                      ....   ....+...++++++|++++++.. .|.|.++-++. |.....  .-.|.+.          +....+.|++++
T Consensus        79 t~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~  158 (346)
T COG2706          79 TFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRY  158 (346)
T ss_pred             EEeeccccCCCCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCE
Confidence            4332   23456689999999999998865 47899999865 433221  2224444          888999999999


Q ss_pred             EEEeeC--CCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEe-CCCcEEEEecCCC-cee
Q 014475          137 LISGSE--DGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSAS-EDRTCKVWSLLKG-RLL  212 (424)
Q Consensus       137 l~s~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~-~d~~v~iwd~~~~-~~~  212 (424)
                      |++...  | +|.+|++..+.....       ....+ .....-+.|.|+|++  ++....+ -+++|.+|..... ..+
T Consensus       159 l~v~DLG~D-ri~~y~~~dg~L~~~-------~~~~v-~~G~GPRHi~FHpn~--k~aY~v~EL~stV~v~~y~~~~g~~  227 (346)
T COG2706         159 LVVPDLGTD-RIFLYDLDDGKLTPA-------DPAEV-KPGAGPRHIVFHPNG--KYAYLVNELNSTVDVLEYNPAVGKF  227 (346)
T ss_pred             EEEeecCCc-eEEEEEcccCccccc-------ccccc-CCCCCcceEEEcCCC--cEEEEEeccCCEEEEEEEcCCCceE
Confidence            988753  4 799999975332111       11111 334556789999998  5655444 5889999998763 222


Q ss_pred             eeee----------cCcceeEEEECCCCCEEEEEeC-CCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-C
Q 014475          213 RNIV----------FPSVIDAIALDPAEHVFYAGSR-DGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-G  280 (424)
Q Consensus       213 ~~~~----------~~~~i~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~  280 (424)
                      ..++          .......+.++|+|++|+++.. ...|.+|.+......     ...+.....+....+...+++ +
T Consensus       228 ~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~-----L~~~~~~~teg~~PR~F~i~~~g  302 (346)
T COG2706         228 EELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGK-----LELVGITPTEGQFPRDFNINPSG  302 (346)
T ss_pred             EEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCE-----EEEEEEeccCCcCCccceeCCCC
Confidence            2221          2456788999999999998764 337888888765321     133344444555678889999 9


Q ss_pred             CEEEEeCCC-CcEEEEeCC--CCcEEE
Q 014475          281 DLLISGSED-GMVRVWDPI--THNIVR  304 (424)
Q Consensus       281 ~~l~t~~~d-g~i~iwd~~--~~~~~~  304 (424)
                      ++|+++..+ ..|.+|...  +|++-.
T Consensus       303 ~~Liaa~q~sd~i~vf~~d~~TG~L~~  329 (346)
T COG2706         303 RFLIAANQKSDNITVFERDKETGRLTL  329 (346)
T ss_pred             CEEEEEccCCCcEEEEEEcCCCceEEe
Confidence            999888865 458887654  555433

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.56  E-value=4.3e-13  Score=111.06  Aligned_cols=229  Identities=15%  Similarity=0.198  Sum_probs=164.7

Q ss_pred             EEEeecCCCCCceEEEeC-CCCceEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCC----ce-eee
Q 014475            3 LLIASSSVADTGIGCWDL-ESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKP----QV-EVK   76 (424)
Q Consensus         3 ~~lat~~~~dg~i~vwd~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~----~~-~~~   76 (424)
                      .-+.+.+ .|.++|||-- .+|+.-..+.  ..-+.+++++.  +.+....|+++-.. |++.-+.+...    .. ...
T Consensus        37 ~gv~~~s-~drtvrv~lkrds~q~wpsI~--~~mP~~~~~~~--y~~e~~~L~vg~~n-gtvtefs~sedfnkm~~~r~~  110 (404)
T KOG1409|consen   37 EGVISVS-EDRTVRVWLKRDSGQYWPSIY--HYMPSPCSAME--YVSESRRLYVGQDN-GTVTEFALSEDFNKMTFLKDY  110 (404)
T ss_pred             CCeEEcc-ccceeeeEEeccccccCchhh--hhCCCCceEee--eeccceEEEEEEec-ceEEEEEhhhhhhhcchhhhh
Confidence            4577888 9999999963 3444444332  22346678888  99999998888877 99988876532    11 122


Q ss_pred             ecCCCCeeEEEECCCCCEEEEecCCCcEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccc
Q 014475           77 SLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFE  156 (424)
Q Consensus        77 ~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~  156 (424)
                      ..|..++..+-|+....++++.+.|..+.---.+.+..+..+.- ....+++.+.-.  +...|...|.|.+-.+..   
T Consensus       111 ~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~-~~~~t~~~~d~~--~~fvGd~~gqvt~lr~~~---  184 (404)
T KOG1409|consen  111 LAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNF-ETPASALQFDAL--YAFVGDHSGQITMLKLEQ---  184 (404)
T ss_pred             hhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEe-eccCCCCceeeE--EEEecccccceEEEEEee---
Confidence            45889999999999999999999997766544455544433211 111122222211  555666677777666643   


Q ss_pred             hhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCcee--eeeecCcceeEEEECCCCCEEE
Q 014475          157 ECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLL--RNIVFPSVIDAIALDPAEHVFY  234 (424)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~--~~~~~~~~i~~~~~~~~~~~l~  234 (424)
                            .....+.++.+|.+.+.+++|.+..  ..+++|..|..+.+||+.-++-.  ....|...+..++..+.-+.+.
T Consensus       185 ------~~~~~i~~~~~h~~~~~~l~Wd~~~--~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~  256 (404)
T KOG1409|consen  185 ------NGCQLITTFNGHTGEVTCLKWDPGQ--RLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLI  256 (404)
T ss_pred             ------cCCceEEEEcCcccceEEEEEcCCC--cEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhheeee
Confidence                  4556788899999999999999988  89999999999999998654433  3333788899999888889999


Q ss_pred             EEeCCCcEEEEEcCCCC
Q 014475          235 AGSRDGSIYIAALNAES  251 (424)
Q Consensus       235 ~~~~dg~i~i~d~~~~~  251 (424)
                      +++.||.|.+|+++...
T Consensus       257 S~~edg~i~~w~mn~~r  273 (404)
T KOG1409|consen  257 SCGEDGGIVVWNMNVKR  273 (404)
T ss_pred             eccCCCeEEEEecccee
Confidence            99999999999987653

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.55  E-value=2.9e-13  Score=112.06  Aligned_cols=249  Identities=15%  Similarity=0.178  Sum_probs=170.0

Q ss_pred             CCceEEecceeecCCCccccCCCCceeEEEEECCCCce---ee---eecC------------CCCeeEEEECCCC--CEE
Q 014475           36 PHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQV---EV---KSLP------------AEPIKPIAANSHG--TYI   95 (424)
Q Consensus        36 ~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~---~~---~~~~------------~~~v~~~~~s~~~--~~l   95 (424)
                      ..-+.++.  |...|.+|++|..+ |.|.++.-+....   ..   ...|            .+.|+.+.|.+++  ..+
T Consensus        25 adiis~ve--f~~~Ge~LatGdkg-GRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~F  101 (433)
T KOG1354|consen   25 ADIISAVE--FDHYGERLATGDKG-GRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEF  101 (433)
T ss_pred             hcceeeEE--eecccceEeecCCC-CeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEE
Confidence            35577788  99999999999998 9999997653221   11   1111            3579999999864  456


Q ss_pred             EEecCCCcEEEEEccCcceee-----------------------------------ee-ccccCCeEEEEEccCCcEEEE
Q 014475           96 AGGGQSGDIYMWEVASGRLLK-----------------------------------KW-HAHYRAVTCLVFSEDGSFLIS  139 (424)
Q Consensus        96 ~~~~~dg~v~iwd~~~~~~~~-----------------------------------~~-~~~~~~i~~~~~~~~~~~l~s  139 (424)
                      +..+.|.+|++|.+.......                                   .+ ..|.-.|+++.++.|...+++
T Consensus       102 LlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lS  181 (433)
T KOG1354|consen  102 LLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLS  181 (433)
T ss_pred             EEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEee
Confidence            677889999999885431110                                   01 357788999999999998888


Q ss_pred             eeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeee----e
Q 014475          140 GSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRN----I  215 (424)
Q Consensus       140 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~----~  215 (424)
                      +. |=+|-+|+++-..+.......++   ..+..-..-|++..|+|... +.++-++..|+|++.|++...+.-.    +
T Consensus       182 AD-dLRINLWnlei~d~sFnIVDIKP---~nmEeLteVITsaEFhp~~c-n~f~YSSSKGtIrLcDmR~~aLCd~hsKlf  256 (433)
T KOG1354|consen  182 AD-DLRINLWNLEIIDQSFNIVDIKP---ANMEELTEVITSAEFHPHHC-NVFVYSSSKGTIRLCDMRQSALCDAHSKLF  256 (433)
T ss_pred             cc-ceeeeeccccccCCceeEEEccc---cCHHHHHHHHhhhccCHhHc-cEEEEecCCCcEEEeechhhhhhcchhhhh
Confidence            74 66899999965322111111110   01112234678888998766 7888888999999999985432111    1


Q ss_pred             e-------------cCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccC------------c
Q 014475          216 V-------------FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHS------------K  270 (424)
Q Consensus       216 ~-------------~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~------------~  270 (424)
                      .             .-..|..+.|+++|+++++-.. -+|.+||++...        +++.+.+-|.            .
T Consensus       257 Eepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~--------~pv~t~~vh~~lr~kLc~lYEnD  327 (433)
T KOG1354|consen  257 EEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEA--------KPVETYPVHEYLRSKLCSLYEND  327 (433)
T ss_pred             ccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccC--------CcceEEeehHhHHHHHHHHhhcc
Confidence            1             1146889999999999987543 479999997765        4444444442            2


Q ss_pred             Ce---EEEEecC-CCEEEEeCCCCcEEEEeCCCCc
Q 014475          271 AV---TCLAYST-GDLLISGSEDGMVRVWDPITHN  301 (424)
Q Consensus       271 ~i---~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~  301 (424)
                      .|   ..++|+. +.+++||+....+++++...|.
T Consensus       328 ~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~gs  362 (433)
T KOG1354|consen  328 AIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARGS  362 (433)
T ss_pred             chhheeEEEEcCCcceEecccccceEEEecCCCCc
Confidence            22   3467877 7899999999999999966543

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.55  E-value=3.8e-12  Score=118.21  Aligned_cols=234  Identities=18%  Similarity=0.127  Sum_probs=150.5

Q ss_pred             eeEEEEECCCCceeeeecCCCCeeEEEECCCCCEEEEecCC---CcEEEEEccCcceeeeeccccCCeEEEEEccCCcEE
Q 014475           61 GSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQS---GDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFL  137 (424)
Q Consensus        61 g~i~vwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---g~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l  137 (424)
                      ..|.++|.+.........+...+...+|+|||+.|+..+.+   ..|.+||+.+++... +....+.+....|+|||+.|
T Consensus       179 ~~l~~~d~~g~~~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpDG~~l  257 (430)
T PRK00178        179 YTLQRSDYDGARAVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPDGSKL  257 (430)
T ss_pred             eEEEEECCCCCCceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCCCCEE
Confidence            36888888877665555677789999999999999876543   369999998886543 22233445578999999987


Q ss_pred             E-EeeCCC--cEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEe-CCC--cEEEEecCCCce
Q 014475          138 I-SGSEDG--CVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSAS-EDR--TCKVWSLLKGRL  211 (424)
Q Consensus       138 ~-s~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~-~d~--~v~iwd~~~~~~  211 (424)
                      + +...+|  .|.+||+.++.            ...+..+........|+|++  +.++..+ .++  .|.++|+.+++.
T Consensus       258 a~~~~~~g~~~Iy~~d~~~~~------------~~~lt~~~~~~~~~~~spDg--~~i~f~s~~~g~~~iy~~d~~~g~~  323 (430)
T PRK00178        258 AFVLSKDGNPEIYVMDLASRQ------------LSRVTNHPAIDTEPFWGKDG--RTLYFTSDRGGKPQIYKVNVNGGRA  323 (430)
T ss_pred             EEEEccCCCceEEEEECCCCC------------eEEcccCCCCcCCeEECCCC--CEEEEEECCCCCceEEEEECCCCCE
Confidence            7 444455  57888886521            12233444455667899988  5555444 344  577778877764


Q ss_pred             eeeeecCcceeEEEECCCCCEEEEEeCC-C--cEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeC
Q 014475          212 LRNIVFPSVIDAIALDPAEHVFYAGSRD-G--SIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGS  287 (424)
Q Consensus       212 ~~~~~~~~~i~~~~~~~~~~~l~~~~~d-g--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~  287 (424)
                      ..............|+|+++.++....+ +  .|.++|+.++..       ..+..    ........|+| ++.++..+
T Consensus       324 ~~lt~~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~-------~~lt~----~~~~~~p~~spdg~~i~~~~  392 (430)
T PRK00178        324 ERVTFVGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSV-------RILTD----TSLDESPSVAPNGTMLIYAT  392 (430)
T ss_pred             EEeecCCCCccceEECCCCCEEEEEEccCCceEEEEEECCCCCE-------EEccC----CCCCCCceECCCCCEEEEEE
Confidence            3332223334457899999998877653 3  578888877531       11111    11122457999 88777665


Q ss_pred             CC---CcEEEEeCCCCcEEEEEeccCCCeeEEEEEec
Q 014475          288 ED---GMVRVWDPITHNIVRMFRLAKGPVNNILVVRR  321 (424)
Q Consensus       288 ~d---g~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~  321 (424)
                      .+   ..|.++++. +.....+..+.+.+...+|+|-
T Consensus       393 ~~~g~~~l~~~~~~-g~~~~~l~~~~g~~~~p~ws~~  428 (430)
T PRK00178        393 RQQGRGVLMLVSIN-GRVRLPLPTAQGEVREPSWSPY  428 (430)
T ss_pred             ecCCceEEEEEECC-CCceEECcCCCCCcCCCccCCC
Confidence            43   346777764 4445556555667777777763

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.54  E-value=3.8e-13  Score=126.53  Aligned_cols=194  Identities=19%  Similarity=0.247  Sum_probs=154.8

Q ss_pred             CCeeEEEECCCCCEEEEecCCCcEEEEEccCcceeeeeccccC----CeEEEEEccCCcEEEEeeCCCcEEEEeCCcccc
Q 014475           81 EPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYR----AVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFE  156 (424)
Q Consensus        81 ~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~----~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~  156 (424)
                      +.+....+..+...++.++.+..+.+||...+.....+.....    ...-+.++++.-++++|+--+.|.+|+...   
T Consensus        88 ~wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~---  164 (967)
T KOG0974|consen   88 DWIFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHE---  164 (967)
T ss_pred             ccccccchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccc---
Confidence            3444456666778888888899999999988877666653322    122233466777899999999999999852   


Q ss_pred             hhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceee--eeecCcceeEEEECCCCCEEE
Q 014475          157 ECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLR--NIVFPSVIDAIALDPAEHVFY  234 (424)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~--~~~~~~~i~~~~~~~~~~~l~  234 (424)
                             ...+ ..+.+|++.|.++.++.++  .++++.+.|.++++|++.+++...  .+.|...+..+++.|+  .++
T Consensus       165 -------dn~p-~~l~GHeG~iF~i~~s~dg--~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i~  232 (967)
T KOG0974|consen  165 -------DNKP-IRLKGHEGSIFSIVTSLDG--RYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--RII  232 (967)
T ss_pred             -------cCCc-ceecccCCceEEEEEccCC--cEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc--eeE
Confidence                   1111 1678999999999999999  999999999999999999988765  4459999999999998  899


Q ss_pred             EEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccC-cCeEEEEecC-CCEEEEeCCCCcEEEEeCCC
Q 014475          235 AGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHS-KAVTCLAYST-GDLLISGSEDGMVRVWDPIT  299 (424)
Q Consensus       235 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~  299 (424)
                      +++.|-+.++|+.+..          .+..+..|. ..|..++..+ ...++|++.||.+++||+..
T Consensus       233 t~gedctcrvW~~~~~----------~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~  289 (967)
T KOG0974|consen  233 TVGEDCTCRVWGVNGT----------QLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNG  289 (967)
T ss_pred             EeccceEEEEEecccc----------eehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhc
Confidence            9999999999977764          344666665 4688999988 78899999999999999764

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.54  E-value=4.5e-12  Score=117.27  Aligned_cols=233  Identities=15%  Similarity=0.117  Sum_probs=148.0

Q ss_pred             eeEEEEECCCCceeeeecCCCCeeEEEECCCCCEEEEecCC---CcEEEEEccCcceeeeeccccCCeEEEEEccCCcEE
Q 014475           61 GSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQS---GDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFL  137 (424)
Q Consensus        61 g~i~vwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---g~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l  137 (424)
                      ..|.++|.+.............+....|+|||+.|+..+.+   ..|++||+.+++... +....+......|+|||+.|
T Consensus       198 ~~l~i~d~dG~~~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g~~~~~~wSPDG~~L  276 (448)
T PRK04792        198 YQLMIADYDGYNEQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-VTSFPGINGAPRFSPDGKKL  276 (448)
T ss_pred             eEEEEEeCCCCCceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ecCCCCCcCCeeECCCCCEE
Confidence            47888888776655555667789999999999999876432   358999998876432 22222334578999999987


Q ss_pred             EE-eeCCCc--EEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEe-CCC--cEEEEecCCCce
Q 014475          138 IS-GSEDGC--VRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSAS-EDR--TCKVWSLLKGRL  211 (424)
Q Consensus       138 ~s-~~~dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~-~d~--~v~iwd~~~~~~  211 (424)
                      +. .+.+|.  |.++|+.++.            ...+..+........|+|++  +.++..+ .++  .|.++|+.+++.
T Consensus       277 a~~~~~~g~~~Iy~~dl~tg~------------~~~lt~~~~~~~~p~wSpDG--~~I~f~s~~~g~~~Iy~~dl~~g~~  342 (448)
T PRK04792        277 ALVLSKDGQPEIYVVDIATKA------------LTRITRHRAIDTEPSWHPDG--KSLIFTSERGGKPQIYRVNLASGKV  342 (448)
T ss_pred             EEEEeCCCCeEEEEEECCCCC------------eEECccCCCCccceEECCCC--CEEEEEECCCCCceEEEEECCCCCE
Confidence            65 556665  7777875421            22333444455678899998  5555444 344  466667777764


Q ss_pred             eeeeecCcceeEEEECCCCCEEEEEeC-CC--cEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeC
Q 014475          212 LRNIVFPSVIDAIALDPAEHVFYAGSR-DG--SIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGS  287 (424)
Q Consensus       212 ~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~  287 (424)
                      .............+|+|+|++++..+. ++  .|.++|+.++..       .   .+... .......|+| ++.|+..+
T Consensus       343 ~~Lt~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~-------~---~lt~~-~~d~~ps~spdG~~I~~~~  411 (448)
T PRK04792        343 SRLTFEGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAM-------Q---VLTST-RLDESPSVAPNGTMVIYST  411 (448)
T ss_pred             EEEecCCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCe-------E---EccCC-CCCCCceECCCCCEEEEEE
Confidence            433222333445789999999887654 34  455667766531       1   11111 1112347899 77766554


Q ss_pred             -CCC--cEEEEeCCCCcEEEEEeccCCCeeEEEEEe
Q 014475          288 -EDG--MVRVWDPITHNIVRMFRLAKGPVNNILVVR  320 (424)
Q Consensus       288 -~dg--~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~  320 (424)
                       .+|  .+.+++. +|+....+..+.+.+...+|+|
T Consensus       412 ~~~g~~~l~~~~~-~G~~~~~l~~~~g~~~~p~Wsp  446 (448)
T PRK04792        412 TYQGKQVLAAVSI-DGRFKARLPAGQGEVKSPAWSP  446 (448)
T ss_pred             ecCCceEEEEEEC-CCCceEECcCCCCCcCCCccCC
Confidence             334  3777786 5777777776667778888887

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.53  E-value=4.1e-12  Score=117.82  Aligned_cols=216  Identities=14%  Similarity=0.075  Sum_probs=143.1

Q ss_pred             CCceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCCCc--eeEEEEECCCCceeeeecCCCCeeEEEEC
Q 014475           12 DTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASS--GSILYWSWSKPQVEVKSLPAEPIKPIAAN   89 (424)
Q Consensus        12 dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~--g~i~vwd~~~~~~~~~~~~~~~v~~~~~s   89 (424)
                      ...|.++|...+ ..+.+..+.   ..+....  |+|+|+.++.+...+  ..|.+||+.+++......+...+.+++|+
T Consensus       169 ~~~l~~~d~~g~-~~~~l~~~~---~~~~~p~--~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~s  242 (417)
T TIGR02800       169 RYELQVADYDGA-NPQTITRSR---EPILSPA--WSPDGQKLAYVSFESGKPEIYVQDLATGQREKVASFPGMNGAPAFS  242 (417)
T ss_pred             cceEEEEcCCCC-CCEEeecCC---Cceeccc--CCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCCCCccceEEC
Confidence            346888887643 344443322   3456666  999999998775432  57999999887665555556677789999


Q ss_pred             CCCCEEEE-ecCCC--cEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEeeC-CC--cEEEEeCCcccchhccccc
Q 014475           90 SHGTYIAG-GGQSG--DIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSE-DG--CVRIWSLLTVFEECESQRA  163 (424)
Q Consensus        90 ~~~~~l~~-~~~dg--~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~-dg--~i~iwd~~~~~~~~~~~~~  163 (424)
                      |||+.|+. .+.++  .|++||+.++... .+..+........|+|+++.|+..+. ++  .|.++|+.++         
T Consensus       243 pDg~~l~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~---------  312 (417)
T TIGR02800       243 PDGSKLAVSLSKDGNPDIYVMDLDGKQLT-RLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGG---------  312 (417)
T ss_pred             CCCCEEEEEECCCCCccEEEEECCCCCEE-ECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCC---------
Confidence            99987764 34443  5889998877543 33344455567799999998876654 33  5777777542         


Q ss_pred             ccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCC---cEEEEecCCCceeeeeecCcceeEEEECCCCCEEEEEeCCC
Q 014475          164 SHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDR---TCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDG  240 (424)
Q Consensus       164 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~---~v~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg  240 (424)
                      .   ...+..+........|+|++  +.++.++.++   .|.+||+.++.. ..+..........|+|+++.|+..+.++
T Consensus       313 ~---~~~l~~~~~~~~~~~~spdg--~~i~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~p~~spdg~~l~~~~~~~  386 (417)
T TIGR02800       313 E---VRRLTFRGGYNASPSWSPDG--DLIAFVHREGGGFNIAVMDLDGGGE-RVLTDTGLDESPSFAPNGRMILYATTRG  386 (417)
T ss_pred             C---EEEeecCCCCccCeEECCCC--CEEEEEEccCCceEEEEEeCCCCCe-EEccCCCCCCCceECCCCCEEEEEEeCC
Confidence            1   12233344556678899988  7777777665   788999887553 3333233345668999999888877654


Q ss_pred             ---cEEEEEcCC
Q 014475          241 ---SIYIAALNA  249 (424)
Q Consensus       241 ---~i~i~d~~~  249 (424)
                         .+++.+...
T Consensus       387 ~~~~l~~~~~~g  398 (417)
T TIGR02800       387 GRGVLGLVSTDG  398 (417)
T ss_pred             CcEEEEEEECCC
Confidence               345555433

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=99.52  E-value=1.5e-13  Score=135.48  Aligned_cols=190  Identities=19%  Similarity=0.296  Sum_probs=157.3

Q ss_pred             CCCceEEecceeecCCCccccCCCCceeEEEEECCCCceeee--ecCCCCeeEEEECCCCCEEEEecCCCcEEEEEccCc
Q 014475           35 PPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVK--SLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASG  112 (424)
Q Consensus        35 ~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~--~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~  112 (424)
                      ++..|.++.  -+|...+.++++.| |.|++|.+..++....  ......|+.+.|+.+|+.+..+..||.+.+|... .
T Consensus      2207 ~v~~v~r~~--sHp~~~~Yltgs~d-gsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~-p 2282 (2439)
T KOG1064|consen 2207 PVENVRRMT--SHPSDPYYLTGSQD-GSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS-P 2282 (2439)
T ss_pred             ccCceeeec--CCCCCceEEecCCC-ceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC-C
Confidence            456678877  88999999999998 9999999987775533  3345889999999999999999999999999975 6


Q ss_pred             ceeeeeccccCCeEEEEEccCCcEEEEeeC---CCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCce
Q 014475          113 RLLKKWHAHYRAVTCLVFSEDGSFLISGSE---DGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVS  189 (424)
Q Consensus       113 ~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  189 (424)
                      +.....+.|....+.+.|-.  ..+++++.   ++.+.+||..-.        ....++.  ..|.+.++++++.|..  
T Consensus      2283 k~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~--------~~~s~v~--~~H~~gaT~l~~~P~~-- 2348 (2439)
T KOG1064|consen 2283 KPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLP--------PMNSLVH--TCHDGGATVLAYAPKH-- 2348 (2439)
T ss_pred             cceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccC--------cccceee--eecCCCceEEEEcCcc--
Confidence            66777889999999999984  56777654   688999997431        2222333  7899999999999998  


Q ss_pred             eEEEEEeCCCcEEEEecCCCceeeeeecCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCC
Q 014475          190 ATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAES  251 (424)
Q Consensus       190 ~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  251 (424)
                      ..|++|+.+|.|++||++..++.+.++.        ++ ...++++|+..|.++||++....
T Consensus      2349 qllisggr~G~v~l~D~rqrql~h~~~~--------~~-~~~~f~~~ss~g~ikIw~~s~~~ 2401 (2439)
T KOG1064|consen 2349 QLLISGGRKGEVCLFDIRQRQLRHTFQA--------LD-TREYFVTGSSEGNIKIWRLSEFG 2401 (2439)
T ss_pred             eEEEecCCcCcEEEeehHHHHHHHHhhh--------hh-hhheeeccCcccceEEEEccccc
Confidence            8999999999999999998888777653        44 67789999999999999998863

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.52  E-value=1.8e-11  Score=112.45  Aligned_cols=241  Identities=13%  Similarity=0.031  Sum_probs=145.0

Q ss_pred             CceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCcccc--CCCC--ceeEEEEECCCCceeeeecCCCCeeEEEE
Q 014475           13 TGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQ--PSAS--SGSILYWSWSKPQVEVKSLPAEPIKPIAA   88 (424)
Q Consensus        13 g~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~--~~~~--~g~i~vwd~~~~~~~~~~~~~~~v~~~~~   88 (424)
                      +.|.+.|...+.. +.+....   .....-.  |+|||+.++.  .+..  ...|.+.++.+++........+.....+|
T Consensus       165 ~~l~~~d~dG~~~-~~lt~~~---~~~~sP~--wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~g~~~~p~w  238 (428)
T PRK01029        165 GELWSVDYDGQNL-RPLTQEH---SLSITPT--WMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQGNQLMPTF  238 (428)
T ss_pred             ceEEEEcCCCCCc-eEcccCC---CCcccce--EccCCCceEEEEEEccCCCceEEEEECCCCCceEeecCCCCccceEE
Confidence            4677788764443 3343322   2233334  9999986332  2222  14688888888776555555566677899


Q ss_pred             CCCCCEEEEecC-CC----cEEEEEccCc---ceeeeeccccCCeEEEEEccCCcEEEEee-CCCcEEEEeCCcccchhc
Q 014475           89 NSHGTYIAGGGQ-SG----DIYMWEVASG---RLLKKWHAHYRAVTCLVFSEDGSFLISGS-EDGCVRIWSLLTVFEECE  159 (424)
Q Consensus        89 s~~~~~l~~~~~-dg----~v~iwd~~~~---~~~~~~~~~~~~i~~~~~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~  159 (424)
                      ||||+.|+..+. +|    .+.+|++..+   +.......+.......+|+|||+.|+..+ .+|...+|.+.-.     
T Consensus       239 SPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~-----  313 (428)
T PRK01029        239 SPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQID-----  313 (428)
T ss_pred             CCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECc-----
Confidence            999998886542 22    2444676653   32333333333456789999999877665 4665555543210     


Q ss_pred             ccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCC---CcEEEEecCCCceeeeeecCcceeEEEECCCCCEEEEE
Q 014475          160 SQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASED---RTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAG  236 (424)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d---~~v~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~  236 (424)
                         ........+..+...+....|+|++  +.|+..+.+   ..|.+||+.+++..........+....|+|+|+.|+..
T Consensus       314 ---~~g~~~~~lt~~~~~~~~p~wSPDG--~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~~~~~~~p~wSpDG~~L~f~  388 (428)
T PRK01029        314 ---PEGQSPRLLTKKYRNSSCPAWSPDG--KKIAFCSVIKGVRQICVYDLATGRDYQLTTSPENKESPSWAIDSLHLVYS  388 (428)
T ss_pred             ---ccccceEEeccCCCCccceeECCCC--CEEEEEEcCCCCcEEEEEECCCCCeEEccCCCCCccceEECCCCCEEEEE
Confidence               0011123334444566788999998  666655433   36899999888765443344567789999999988754


Q ss_pred             eC---CCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC
Q 014475          237 SR---DGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST  279 (424)
Q Consensus       237 ~~---dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  279 (424)
                      ..   ...|+++|+..+.          ...+....+.+...+|+|
T Consensus       389 ~~~~g~~~L~~vdl~~g~----------~~~Lt~~~g~~~~p~Ws~  424 (428)
T PRK01029        389 AGNSNESELYLISLITKK----------TRKIVIGSGEKRFPSWGA  424 (428)
T ss_pred             ECCCCCceEEEEECCCCC----------EEEeecCCCcccCceecC
Confidence            43   3468888887753          122222334456667776

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.51  E-value=1e-11  Score=115.30  Aligned_cols=234  Identities=16%  Similarity=0.134  Sum_probs=147.0

Q ss_pred             ceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCCCc--eeEEEEECCCCceeeeecCCCCeeEEEECCC
Q 014475           14 GIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASS--GSILYWSWSKPQVEVKSLPAEPIKPIAANSH   91 (424)
Q Consensus        14 ~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~--g~i~vwd~~~~~~~~~~~~~~~v~~~~~s~~   91 (424)
                      .|.++|...+. .+.+..+   ...+....  |+|+|+.|+..+.++  ..|.+|++.+++........+.+...+|+||
T Consensus       180 ~l~~~d~~g~~-~~~l~~~---~~~~~~p~--wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~g~~~~~~~SpD  253 (430)
T PRK00178        180 TLQRSDYDGAR-AVTLLQS---REPILSPR--WSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFEGLNGAPAWSPD  253 (430)
T ss_pred             EEEEECCCCCC-ceEEecC---CCceeeee--ECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCCCCcCCeEECCC
Confidence            48888877544 3444333   23466666  999999998765442  4689999988776544444455667999999


Q ss_pred             CCEEEE-ecCCC--cEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEeeC-CC--cEEEEeCCcccchhccccccc
Q 014475           92 GTYIAG-GGQSG--DIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSE-DG--CVRIWSLLTVFEECESQRASH  165 (424)
Q Consensus        92 ~~~l~~-~~~dg--~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~-dg--~i~iwd~~~~~~~~~~~~~~~  165 (424)
                      |+.|+. ...+|  .|++||+.+++.. .+..+........|+||++.++..+. +|  .|+++|+.++.         .
T Consensus       254 G~~la~~~~~~g~~~Iy~~d~~~~~~~-~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~---------~  323 (430)
T PRK00178        254 GSKLAFVLSKDGNPEIYVMDLASRQLS-RVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGR---------A  323 (430)
T ss_pred             CCEEEEEEccCCCceEEEEECCCCCeE-EcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCC---------E
Confidence            998874 44444  5888899887644 34445555677899999998776554 33  47777775421         1


Q ss_pred             ceEEeecCCcCceeEEEEEEcCceeEEEEEeC-CC--cEEEEecCCCceeeeeecCcceeEEEECCCCCEEEEEeCC-C-
Q 014475          166 LYLHSFTGHTLRITDIVIGYGGVSATIVSASE-DR--TCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRD-G-  240 (424)
Q Consensus       166 ~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~-d~--~v~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-g-  240 (424)
                      ..+ ...+  .......|+|++  +.++..+. ++  .|.++|+.+++. ..+..........|+|+|+.++..+.+ + 
T Consensus       324 ~~l-t~~~--~~~~~~~~Spdg--~~i~~~~~~~~~~~l~~~dl~tg~~-~~lt~~~~~~~p~~spdg~~i~~~~~~~g~  397 (430)
T PRK00178        324 ERV-TFVG--NYNARPRLSADG--KTLVMVHRQDGNFHVAAQDLQRGSV-RILTDTSLDESPSVAPNGTMLIYATRQQGR  397 (430)
T ss_pred             EEe-ecCC--CCccceEECCCC--CEEEEEEccCCceEEEEEECCCCCE-EEccCCCCCCCceECCCCCEEEEEEecCCc
Confidence            111 1111  223346788988  66665554 33  478899988764 333333233456899999998876644 3 


Q ss_pred             -cEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC
Q 014475          241 -SIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST  279 (424)
Q Consensus       241 -~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  279 (424)
                       .+++++++...          ...+..+.+.+...+|+|
T Consensus       398 ~~l~~~~~~g~~----------~~~l~~~~g~~~~p~ws~  427 (430)
T PRK00178        398 GVLMLVSINGRV----------RLPLPTAQGEVREPSWSP  427 (430)
T ss_pred             eEEEEEECCCCc----------eEECcCCCCCcCCCccCC
Confidence             46667765432          223333445566666765

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.50  E-value=4.7e-12  Score=112.37  Aligned_cols=189  Identities=19%  Similarity=0.270  Sum_probs=147.9

Q ss_pred             EEEeecCCCCCceEEEeCCCCceEEEeeCCCCCCCceEEec----ceeec--------------CCCccccCCCCceeEE
Q 014475            3 LLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVG----QRFLA--------------SSQLREQPSASSGSIL   64 (424)
Q Consensus         3 ~~lat~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~----~~~~~--------------~~~~l~~~~~~~g~i~   64 (424)
                      .++|... .||.+|+||..+++....+.....-...-.+..    ...+|              +...++-+... |.|.
T Consensus         6 ~~~A~~~-~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~-g~v~   83 (541)
T KOG4547|consen    6 DYFALST-GDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQ-GSVL   83 (541)
T ss_pred             heEeecC-CCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCC-ccEE
Confidence            4788888 999999999999999888764332222222222    01111              23334444444 9999


Q ss_pred             EEECCCCceeeee---cCCCCeeEEEECCCCCEEEEecCCCcEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEee
Q 014475           65 YWSWSKPQVEVKS---LPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGS  141 (424)
Q Consensus        65 vwd~~~~~~~~~~---~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~  141 (424)
                      +|+...+++..+.   .|.++|+++.++.+-..|.+++.|+.+..|+..+...++..++....+.+++.+||++.+++++
T Consensus        84 ~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~~as  163 (541)
T KOG4547|consen   84 LYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILLTAS  163 (541)
T ss_pred             EEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEEecc
Confidence            9999999987664   4889999999999999999999999999999999999999999999999999999999999987


Q ss_pred             CCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEc-----CceeEEE-EEeCCCcEEEEecCC
Q 014475          142 EDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYG-----GVSATIV-SASEDRTCKVWSLLK  208 (424)
Q Consensus       142 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-----~~~~~l~-~~~~d~~v~iwd~~~  208 (424)
                      .  +|++||+++           ...+..+.+|.++|+++.|...     |  .+++ +...+..+.+|-++.
T Consensus       164 ~--~ik~~~~~~-----------kevv~~ftgh~s~v~t~~f~~~~~g~~G--~~vLssa~~~r~i~~w~v~~  221 (541)
T KOG4547|consen  164 R--QIKVLDIET-----------KEVVITFTGHGSPVRTLSFTTLIDGIIG--KYVLSSAAAERGITVWVVEK  221 (541)
T ss_pred             c--eEEEEEccC-----------ceEEEEecCCCcceEEEEEEEecccccc--ceeeeccccccceeEEEEEc
Confidence            5  799999955           5578899999999999999876     3  4444 444556677887654

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.50  E-value=1.5e-10  Score=103.71  Aligned_cols=268  Identities=15%  Similarity=0.150  Sum_probs=172.3

Q ss_pred             eeEEEEEC--CCCceeeee--cCCCCeeEEEECCCCCEEEEecC----CCcEEEEEccCc--c--eeeeeccccCCeEEE
Q 014475           61 GSILYWSW--SKPQVEVKS--LPAEPIKPIAANSHGTYIAGGGQ----SGDIYMWEVASG--R--LLKKWHAHYRAVTCL  128 (424)
Q Consensus        61 g~i~vwd~--~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~----dg~v~iwd~~~~--~--~~~~~~~~~~~i~~~  128 (424)
                      +.|.+|++  +++++....  ........++++|++++|.+...    +|.|..|++...  +  .+............+
T Consensus        13 ~gI~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i   92 (345)
T PF10282_consen   13 GGIYVFRFDEETGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHI   92 (345)
T ss_dssp             TEEEEEEEETTTTEEEEEEEEEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEE
T ss_pred             CcEEEEEEcCCCCCceEeeeecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEE
Confidence            78888888  344443222  24567788999999999988866    568999998764  2  333333344566789


Q ss_pred             EEccCCcEEEEee-CCCcEEEEeCCcccchhcccccccceEEee--------cCCcCceeEEEEEEcCceeEEEEEe-CC
Q 014475          129 VFSEDGSFLISGS-EDGCVRIWSLLTVFEECESQRASHLYLHSF--------TGHTLRITDIVIGYGGVSATIVSAS-ED  198 (424)
Q Consensus       129 ~~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~--------~~~~~~i~~~~~~~~~~~~~l~~~~-~d  198 (424)
                      +++|++++|+++. .+|.|.++++..........     .....        ........++.++|++  +++++.. ..
T Consensus        93 ~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~-----~~~~~~g~g~~~~rq~~~h~H~v~~~pdg--~~v~v~dlG~  165 (345)
T PF10282_consen   93 AVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVV-----QTVRHEGSGPNPDRQEGPHPHQVVFSPDG--RFVYVPDLGA  165 (345)
T ss_dssp             EECTTSSEEEEEETTTTEEEEEEECTTSEEEEEE-----EEEESEEEESSTTTTSSTCEEEEEE-TTS--SEEEEEETTT
T ss_pred             EEecCCCEEEEEEccCCeEEEEEccCCcccceee-----eecccCCCCCcccccccccceeEEECCCC--CEEEEEecCC
Confidence            9999999998886 48899999997621110000     00000        1123456778999998  6665544 45


Q ss_pred             CcEEEEecCCCc--eee--e--eecCcceeEEEECCCCCEEEEEe-CCCcEEEEEcCCCCCCCCCcCceeeeeecc----
Q 014475          199 RTCKVWSLLKGR--LLR--N--IVFPSVIDAIALDPAEHVFYAGS-RDGSIYIAALNAESPSTSSYGMHIIGSLSD----  267 (424)
Q Consensus       199 ~~v~iwd~~~~~--~~~--~--~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~----  267 (424)
                      ..|.+|++....  ...  .  +......+.+.|+|+++++++.. .++.|.++++......     ...+.....    
T Consensus       166 D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~-----~~~~~~~~~~~~~  240 (345)
T PF10282_consen  166 DRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGS-----LTEIQTISTLPEG  240 (345)
T ss_dssp             TEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTE-----EEEEEEEESCETT
T ss_pred             CEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCc-----eeEEEEeeecccc
Confidence            579999997654  322  2  23557789999999999887765 5678999999832211     122222211    


Q ss_pred             --cCcCeEEEEecC-CCEEEEeC-CCCcEEEEeCC--CCc--EEEEEeccCCCeeEEEEEecCceeeecc-CCCceeecc
Q 014475          268 --HSKAVTCLAYST-GDLLISGS-EDGMVRVWDPI--THN--IVRMFRLAKGPVNNILVVRRPLYLNLGS-FSNPHTSSR  338 (424)
Q Consensus       268 --~~~~i~~~~~~~-~~~l~t~~-~dg~i~iwd~~--~~~--~~~~~~~~~~~v~~l~~s~~~~~l~~~~-~d~~i~iw~  338 (424)
                        .......++++| +++|+++. ..+.|.+|++.  +++  .+..+......-+.++++|+|++|+++. .++.|.+|+
T Consensus       241 ~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~  320 (345)
T PF10282_consen  241 FTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFD  320 (345)
T ss_dssp             SCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEE
T ss_pred             ccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEE
Confidence              122578899999 88766654 57789999983  333  3444444344578999999999998765 667899997


Q ss_pred             CC
Q 014475          339 RH  340 (424)
Q Consensus       339 ~~  340 (424)
                      +.
T Consensus       321 ~d  322 (345)
T PF10282_consen  321 ID  322 (345)
T ss_dssp             EE
T ss_pred             Ee
Confidence            74

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.50  E-value=2.1e-12  Score=107.10  Aligned_cols=250  Identities=17%  Similarity=0.261  Sum_probs=191.7

Q ss_pred             ecCCCCeeEEEECCCCCEEEEecCCCcEEEEEcc-Ccceeeee-ccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcc
Q 014475           77 SLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVA-SGRLLKKW-HAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTV  154 (424)
Q Consensus        77 ~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~-~~~~~~~~-~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~  154 (424)
                      .++.+.++....-|-..-+++.+.|.+++||--+ .++.-..+ .....+++++.+.++...|++|-..|++.-+.+...
T Consensus        21 eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~sed  100 (404)
T KOG1409|consen   21 EGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVTEFALSED  100 (404)
T ss_pred             cCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceEEEEEhhhh
Confidence            3456677877777877779999999999999643 33332222 234578999999999999999999999999887543


Q ss_pred             cchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeeecCcceeEEEECCCCCEEE
Q 014475          155 FEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFY  234 (424)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~  234 (424)
                      .       ++....+....|...+..+.|+...  .++++.+.|..+.---.+.+..+.........+++.+.-.  +..
T Consensus       101 f-------nkm~~~r~~~~h~~~v~~~if~~~~--e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~--~~f  169 (404)
T KOG1409|consen  101 F-------NKMTFLKDYLAHQARVSAIVFSLTH--EWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDAL--YAF  169 (404)
T ss_pred             h-------hhcchhhhhhhhhcceeeEEecCCc--eeEEEeccccceEEEeeccCCcccceEeeccCCCCceeeE--EEE
Confidence            2       3344556678899999999998877  8999999998876555555555544443333333333222  666


Q ss_pred             EEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCCCc-EEEEEeccCCC
Q 014475          235 AGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHN-IVRMFRLAKGP  312 (424)
Q Consensus       235 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~-~~~~~~~~~~~  312 (424)
                      +|...|.+.+-.+....       ..++..+.+|.+.+.+++|.+ ...|.+|..|..+.+||+.-++ ....+.+|.+.
T Consensus       170 vGd~~gqvt~lr~~~~~-------~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~k  242 (404)
T KOG1409|consen  170 VGDHSGQITMLKLEQNG-------CQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDK  242 (404)
T ss_pred             ecccccceEEEEEeecC-------CceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhh
Confidence            77778888777765544       367889999999999999999 8999999999999999997544 34567789999


Q ss_pred             eeEEEEEecCceeeeccCCCceeeccCCCCCC
Q 014475          313 VNNILVVRRPLYLNLGSFSNPHTSSRRHGSQL  344 (424)
Q Consensus       313 v~~l~~s~~~~~l~~~~~d~~i~iw~~~~~~~  344 (424)
                      |..+..-+.-+.|.+++.||.|.+|+.+....
T Consensus       243 V~~l~~~~~t~~l~S~~edg~i~~w~mn~~r~  274 (404)
T KOG1409|consen  243 VQALSYAQHTRQLISCGEDGGIVVWNMNVKRV  274 (404)
T ss_pred             hhhhhhhhhheeeeeccCCCeEEEEeccceee
Confidence            99999999999999999999999999985543

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=99.50  E-value=1.9e-10  Score=114.05  Aligned_cols=282  Identities=12%  Similarity=0.105  Sum_probs=191.7

Q ss_pred             CCCceEEecceeecCCCccccCCCCceeEEEE----ECCCCceeeeecCCCCeeEEEECCCCCEEEEecCCCcEEEEEcc
Q 014475           35 PPHGLACVGQRFLASSQLREQPSASSGSILYW----SWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVA  110 (424)
Q Consensus        35 ~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vw----d~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~  110 (424)
                      ....|..+.  |.++...++.+..+ |.|.+.    +...........-...|.+++||||+..|+..+.++++.+-.-.
T Consensus        74 ~~~~ivs~~--yl~d~~~l~~~~~~-Gdi~~~~~~~~~~~~~~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~  150 (928)
T PF04762_consen   74 PNDKIVSFQ--YLADSESLCIALAS-GDIILVREDPDPDEDEIEIVGSVDSGILAASWSPDEELLALVTGEGNLLLMTRD  150 (928)
T ss_pred             CCCcEEEEE--eccCCCcEEEEECC-ceEEEEEccCCCCCceeEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEecc
Confidence            446678888  99999988888887 999999    76777777777778999999999999999999999888775321


Q ss_pred             ---------------C--------cceeeeecc------------------------ccCCeEEEEEccCCcEEEEeeC-
Q 014475          111 ---------------S--------GRLLKKWHA------------------------HYRAVTCLVFSEDGSFLISGSE-  142 (424)
Q Consensus       111 ---------------~--------~~~~~~~~~------------------------~~~~i~~~~~~~~~~~l~s~~~-  142 (424)
                                     .        |+....|+|                        +...-..++|-.||+++|+.+- 
T Consensus       151 fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~  230 (928)
T PF04762_consen  151 FDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVE  230 (928)
T ss_pred             ceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEE
Confidence                           0        011111110                        2234567889999999998764 


Q ss_pred             --C---CcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeC---CCcEEEEecCCCceeee
Q 014475          143 --D---GCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASE---DRTCKVWSLLKGRLLRN  214 (424)
Q Consensus       143 --d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~---d~~v~iwd~~~~~~~~~  214 (424)
                        .   ..++||+-+.            ....+...-.+--.+++|.|.|  +++++.-.   ...|.+|. ++|-....
T Consensus       231 ~~~~~~R~iRVy~ReG------------~L~stSE~v~gLe~~l~WrPsG--~lIA~~q~~~~~~~VvFfE-rNGLrhge  295 (928)
T PF04762_consen  231 PETGSRRVIRVYSREG------------ELQSTSEPVDGLEGALSWRPSG--NLIASSQRLPDRHDVVFFE-RNGLRHGE  295 (928)
T ss_pred             cCCCceeEEEEECCCc------------eEEeccccCCCccCCccCCCCC--CEEEEEEEcCCCcEEEEEe-cCCcEeee
Confidence              2   4789998642            1111112222233467899998  78887765   34566776 45655555


Q ss_pred             eec-----CcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecc-cCcCeEEEEecC--CCEEEEe
Q 014475          215 IVF-----PSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSD-HSKAVTCLAYST--GDLLISG  286 (424)
Q Consensus       215 ~~~-----~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~--~~~l~t~  286 (424)
                      +..     ...+..+.|++++..|++...|. |.+|...+-.       |-..+.+.- ....+..+.|+|  ...|...
T Consensus       296 F~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYH-------WYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~  367 (928)
T PF04762_consen  296 FTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYH-------WYLKQEIRFSSSESVNFVKWDPEKPLRLHVL  367 (928)
T ss_pred             EecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCE-------EEEEEEEEccCCCCCCceEECCCCCCEEEEE
Confidence            552     46799999999999999977655 9999988753       333333332 223455589999  5566666


Q ss_pred             CCCCcEEEEeC----CCC--------cEEEEEe-----------------------ccCCCeeEEEEEecCceeeeccCC
Q 014475          287 SEDGMVRVWDP----ITH--------NIVRMFR-----------------------LAKGPVNNILVVRRPLYLNLGSFS  331 (424)
Q Consensus       287 ~~dg~i~iwd~----~~~--------~~~~~~~-----------------------~~~~~v~~l~~s~~~~~l~~~~~d  331 (424)
                      ..+|.+..++.    ..+        ..+..+.                       .-..+|.+++|++++..+++-..|
T Consensus       368 t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~~~avl~~d  447 (928)
T PF04762_consen  368 TSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSNSRFAVLTSD  447 (928)
T ss_pred             ecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCCCCeEEEEECC
Confidence            66666655442    211        0111111                       234689999999999889999999


Q ss_pred             CceeeccCCCC
Q 014475          332 NPHTSSRRHGS  342 (424)
Q Consensus       332 ~~i~iw~~~~~  342 (424)
                      |.+.+|.....
T Consensus       448 ~~l~~~~~~~~  458 (928)
T PF04762_consen  448 GSLSIYEWDLK  458 (928)
T ss_pred             CCEEEEEecCC
Confidence            99999986544

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=99.49  E-value=7.3e-12  Score=114.46  Aligned_cols=326  Identities=13%  Similarity=0.045  Sum_probs=209.6

Q ss_pred             eEEEeecCCCCCceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCc-cccCCCCceeEEEEECCCCceeeeecC-
Q 014475            2 ELLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQL-REQPSASSGSILYWSWSKPQVEVKSLP-   79 (424)
Q Consensus         2 e~~lat~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-l~~~~~~~g~i~vwd~~~~~~~~~~~~-   79 (424)
                      ..+||+++ -.|.|.|||...+..+..+..+..++..+..+-  +-++.+. |++-... .++.+|+.++++..++..- 
T Consensus        79 ~lliAsaD-~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~--~rd~Srd~LlaIh~s-s~lvLwntdtG~k~Wk~~ys  154 (1062)
T KOG1912|consen   79 QLLIASAD-ISGRIILVDFVLASVINWLSHSNDSVQDLCWVP--ARDDSRDVLLAIHGS-STLVLWNTDTGEKFWKYDYS  154 (1062)
T ss_pred             ceeEEecc-ccCcEEEEEehhhhhhhhhcCCCcchhheeeee--ccCcchheeEEecCC-cEEEEEEccCCceeeccccC
Confidence            36899999 999999999999998888887776666666555  5556633 3333443 8999999999999888664 


Q ss_pred             CCCeeEEEECC-CCCEEEEecCCCcEEEEEccC-------cceeeeeccccC----------------C---------eE
Q 014475           80 AEPIKPIAANS-HGTYIAGGGQSGDIYMWEVAS-------GRLLKKWHAHYR----------------A---------VT  126 (424)
Q Consensus        80 ~~~v~~~~~s~-~~~~l~~~~~dg~v~iwd~~~-------~~~~~~~~~~~~----------------~---------i~  126 (424)
                      .....|+.+.| |.+.+..-+..|.|.+-+.-.       ++..+.-..|..                .         .-
T Consensus       155 ~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a  234 (1062)
T KOG1912|consen  155 HEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCA  234 (1062)
T ss_pred             CcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHH
Confidence            45566799999 677777667777777766521       122221112211                0         12


Q ss_pred             EEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEec
Q 014475          127 CLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSL  206 (424)
Q Consensus       127 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~  206 (424)
                      .++|+|.-+.++-......+.++|++-           ..++....-..+.+.-+.+-|++....|++...||.+.+|--
T Consensus       235 ~faf~p~~rn~lfi~~prellv~dle~-----------~~~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltirvr  303 (1062)
T KOG1912|consen  235 QFAFSPHWRNILFITFPRELLVFDLEY-----------ECCLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVR  303 (1062)
T ss_pred             hhhcChhhhceEEEEeccceEEEcchh-----------hceeEEEEeccCCcceeEeccCCCcceEEEEecCCeEEEEEe
Confidence            345677555555555667899999943           334444444555666778888888789999999999999975


Q ss_pred             CCC----------------ceeeeee--cCcceeEEEECCC-CCEEEEEeCCCcEEEEEcCCCCCCCCC----------c
Q 014475          207 LKG----------------RLLRNIV--FPSVIDAIALDPA-EHVFYAGSRDGSIYIAALNAESPSTSS----------Y  257 (424)
Q Consensus       207 ~~~----------------~~~~~~~--~~~~i~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~----------~  257 (424)
                      +..                ++...+.  ....+......|. ...++.--.+|...+|.+.++......          +
T Consensus       304 k~~~~~f~~~~~~l~~dl~~Q~~~vr~m~~~rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri~~~~~s~~iel~~pf  383 (1062)
T KOG1912|consen  304 KEEPTEFKKPNASLSMDLGEQVHVVRPMEEFRPVIGASCPSTPSALAVLYSSGDSTFWQLSNGRIHLDYRSSSIELVLPF  383 (1062)
T ss_pred             eccCccccccchhhccccccceEEEeechhcccceeecCCCChhhhhhhhhcchhHHHhhhcCCcCcccccccccccccc
Confidence            531                1111111  1111222233443 444555556788888888754331100          0


Q ss_pred             ------------CceeeeeecccCcCeEEEEecC-C------------------CEEEEeCCCCcEEEEeCCCCcEEEEE
Q 014475          258 ------------GMHIIGSLSDHSKAVTCLAYST-G------------------DLLISGSEDGMVRVWDPITHNIVRMF  306 (424)
Q Consensus       258 ------------~~~~~~~~~~~~~~i~~~~~~~-~------------------~~l~t~~~dg~i~iwd~~~~~~~~~~  306 (424)
                                  ....+....+|....++....| .                  .+++.|...|+|.++|+.++..-+.+
T Consensus       384 ~f~~~~~~v~k~~l~~LS~dg~h~sGs~~~~~~p~p~~t~~~~~p~~n~~~~~~pLvAvGT~sGTV~vvdvst~~v~~~f  463 (1062)
T KOG1912|consen  384 DFNLSTKLVGKTSLISLSDDGSHSSGSTCVRMRPMPELTKVENDPGGNTPAGTVPLVAVGTNSGTVDVVDVSTNAVAASF  463 (1062)
T ss_pred             cccCceeehhhccccchhhcCCCCCCceeeecccCcccceeecCCCCCccceeeeeEEeecCCceEEEEEecchhhhhhh
Confidence                        0011112224555555554443 1                  37888999999999999999999999


Q ss_pred             eccCCCeeEEEEEecCceee---------eccCCCceeeccCCCC
Q 014475          307 RLAKGPVNNILVVRRPLYLN---------LGSFSNPHTSSRRHGS  342 (424)
Q Consensus       307 ~~~~~~v~~l~~s~~~~~l~---------~~~~d~~i~iw~~~~~  342 (424)
                      ..|...|.++.|.-..+++-         +++.-+.+.+=+++++
T Consensus       464 svht~~VkgleW~g~sslvSfsys~~n~~sg~vrN~l~vtdLrtG  508 (1062)
T KOG1912|consen  464 SVHTSLVKGLEWLGNSSLVSFSYSHVNSASGGVRNDLVVTDLRTG  508 (1062)
T ss_pred             cccccceeeeeeccceeEEEeeeccccccccceeeeEEEEEcccc
Confidence            99999999999987765542         2333344667777766

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.48  E-value=2.2e-11  Score=112.74  Aligned_cols=234  Identities=15%  Similarity=0.111  Sum_probs=141.4

Q ss_pred             ceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCCCc--eeEEEEECCCCceeeeecCCCCeeEEEECCC
Q 014475           14 GIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASS--GSILYWSWSKPQVEVKSLPAEPIKPIAANSH   91 (424)
Q Consensus        14 ~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~--g~i~vwd~~~~~~~~~~~~~~~v~~~~~s~~   91 (424)
                      .|.++|..... .+.+...   ...+....  |+|||+.++..+.++  ..|.+||+.+++........+.....+|+||
T Consensus       199 ~l~i~d~dG~~-~~~l~~~---~~~~~~p~--wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g~~~~~~wSPD  272 (448)
T PRK04792        199 QLMIADYDGYN-EQMLLRS---PEPLMSPA--WSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFPGINGAPRFSPD  272 (448)
T ss_pred             EEEEEeCCCCC-ceEeecC---CCcccCce--ECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCCCCcCCeeECCC
Confidence            57777865433 3333322   23455555  999999998775432  3688899887765433333444567899999


Q ss_pred             CCEEEE-ecCCCc--EEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEeeC-CCc--EEEEeCCcccchhccccccc
Q 014475           92 GTYIAG-GGQSGD--IYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSE-DGC--VRIWSLLTVFEECESQRASH  165 (424)
Q Consensus        92 ~~~l~~-~~~dg~--v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~-dg~--i~iwd~~~~~~~~~~~~~~~  165 (424)
                      |+.|+. ...+|.  |+++|+.+++.. .+..+........|+||++.++..+. ++.  |.++|+.++.         .
T Consensus       273 G~~La~~~~~~g~~~Iy~~dl~tg~~~-~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~---------~  342 (448)
T PRK04792        273 GKKLALVLSKDGQPEIYVVDIATKALT-RITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGK---------V  342 (448)
T ss_pred             CCEEEEEEeCCCCeEEEEEECCCCCeE-ECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCC---------E
Confidence            998875 455554  888888777643 44445556678899999998876553 344  5566664421         1


Q ss_pred             ceEEeecCCcCceeEEEEEEcCceeEEEEEeC-CC--cEEEEecCCCceeeeeecCcceeEEEECCCCCEEEEEeCC-C-
Q 014475          166 LYLHSFTGHTLRITDIVIGYGGVSATIVSASE-DR--TCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRD-G-  240 (424)
Q Consensus       166 ~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~-d~--~v~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-g-  240 (424)
                      ..+ +..+  .......|+|++  +.++..+. ++  .|.++|+.+++.. .+..........|+|+|+.++..+.+ + 
T Consensus       343 ~~L-t~~g--~~~~~~~~SpDG--~~l~~~~~~~g~~~I~~~dl~~g~~~-~lt~~~~d~~ps~spdG~~I~~~~~~~g~  416 (448)
T PRK04792        343 SRL-TFEG--EQNLGGSITPDG--RSMIMVNRTNGKFNIARQDLETGAMQ-VLTSTRLDESPSVAPNGTMVIYSTTYQGK  416 (448)
T ss_pred             EEE-ecCC--CCCcCeeECCCC--CEEEEEEecCCceEEEEEECCCCCeE-EccCCCCCCCceECCCCCEEEEEEecCCc
Confidence            111 1122  223346899998  56555443 44  3555787777643 23222222345799999988776543 3 


Q ss_pred             -cEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC
Q 014475          241 -SIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST  279 (424)
Q Consensus       241 -~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  279 (424)
                       .+++++.+..          ....+..+.+.+...+|+|
T Consensus       417 ~~l~~~~~~G~----------~~~~l~~~~g~~~~p~Wsp  446 (448)
T PRK04792        417 QVLAAVSIDGR----------FKARLPAGQGEVKSPAWSP  446 (448)
T ss_pred             eEEEEEECCCC----------ceEECcCCCCCcCCCccCC
Confidence             3667776442          2333444555566677776

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.47  E-value=7.5e-11  Score=108.30  Aligned_cols=240  Identities=13%  Similarity=0.012  Sum_probs=147.2

Q ss_pred             eeEEEEECCCCceeeeecCCCCeeEEEECCCCCEEE---EecCC--CcEEEEEccCcceeeeeccccCCeEEEEEccCCc
Q 014475           61 GSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIA---GGGQS--GDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGS  135 (424)
Q Consensus        61 g~i~vwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~---~~~~d--g~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~  135 (424)
                      +.|.+.|.+................-+|||||+.++   +...+  ..|.+.++.+++.... ....+......|+|||+
T Consensus       165 ~~l~~~d~dG~~~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~l-t~~~g~~~~p~wSPDG~  243 (428)
T PRK01029        165 GELWSVDYDGQNLRPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKI-LALQGNQLMPTFSPRKK  243 (428)
T ss_pred             ceEEEEcCCCCCceEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEe-ecCCCCccceEECCCCC
Confidence            478888887776554444566677889999997532   33333  3588889887754332 22344455689999999


Q ss_pred             EEEEeeC-CC----cEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEe-CCCcEEEEe--cC
Q 014475          136 FLISGSE-DG----CVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSAS-EDRTCKVWS--LL  207 (424)
Q Consensus       136 ~l~s~~~-dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~-~d~~v~iwd--~~  207 (424)
                      .|+..+. +|    .+..|++..+.        ..........+.......+|+|++  +.|+..+ .+|...+|.  +.
T Consensus       244 ~Laf~s~~~g~~di~~~~~~~~~g~--------~g~~~~lt~~~~~~~~~p~wSPDG--~~Laf~s~~~g~~~ly~~~~~  313 (428)
T PRK01029        244 LLAFISDRYGNPDLFIQSFSLETGA--------IGKPRRLLNEAFGTQGNPSFSPDG--TRLVFVSNKDGRPRIYIMQID  313 (428)
T ss_pred             EEEEEECCCCCcceeEEEeecccCC--------CCcceEeecCCCCCcCCeEECCCC--CEEEEEECCCCCceEEEEECc
Confidence            8886553 23    34446664321        011111122222334567899998  6666554 566555554  43


Q ss_pred             C-Cceeeeee-cCcceeEEEECCCCCEEEEEeCC---CcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CC
Q 014475          208 K-GRLLRNIV-FPSVIDAIALDPAEHVFYAGSRD---GSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GD  281 (424)
Q Consensus       208 ~-~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~  281 (424)
                      . +.....+. ....+....|+|+|+.|+..+.+   ..|++||+.++.          ...+......+....|+| ++
T Consensus       314 ~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~----------~~~Lt~~~~~~~~p~wSpDG~  383 (428)
T PRK01029        314 PEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGR----------DYQLTTSPENKESPSWAIDSL  383 (428)
T ss_pred             ccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCC----------eEEccCCCCCccceEECCCCC
Confidence            2 22233333 34566788999999988876543   368999998764          122222234567789999 77


Q ss_pred             EEEEe-CC--CCcEEEEeCCCCcEEEEEeccCCCeeEEEEEecC
Q 014475          282 LLISG-SE--DGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRP  322 (424)
Q Consensus       282 ~l~t~-~~--dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~  322 (424)
                      .|+.. ..  ...|.++|+..++..... ...+.+...+|+|-.
T Consensus       384 ~L~f~~~~~g~~~L~~vdl~~g~~~~Lt-~~~g~~~~p~Ws~~~  426 (428)
T PRK01029        384 HLVYSAGNSNESELYLISLITKKTRKIV-IGSGEKRFPSWGAFP  426 (428)
T ss_pred             EEEEEECCCCCceEEEEECCCCCEEEee-cCCCcccCceecCCC
Confidence            77643 32  356889998877654443 345667778888753

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.47  E-value=3.9e-10  Score=98.60  Aligned_cols=266  Identities=11%  Similarity=0.026  Sum_probs=162.0

Q ss_pred             eeEEEEECCCCceeeeecCCCCeeEEEECCCCCEEEEecC----------CCcEEEEEccCcceeeeeccc-------cC
Q 014475           61 GSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQ----------SGDIYMWEVASGRLLKKWHAH-------YR  123 (424)
Q Consensus        61 g~i~vwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~----------dg~v~iwd~~~~~~~~~~~~~-------~~  123 (424)
                      +.|.+.|.++.+..-...-...-..+ +|||++.|+++..          +..|.+||..+.+.+..+...       ..
T Consensus        27 ~~v~ViD~~~~~v~g~i~~G~~P~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~  105 (352)
T TIGR02658        27 TQVYTIDGEAGRVLGMTDGGFLPNPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGT  105 (352)
T ss_pred             ceEEEEECCCCEEEEEEEccCCCcee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccC
Confidence            78999999988876444433333445 9999998887755          678999999999999887642       22


Q ss_pred             CeEEEEEccCCcEEEEee-C-CCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcE
Q 014475          124 AVTCLVFSEDGSFLISGS-E-DGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTC  201 (424)
Q Consensus       124 ~i~~~~~~~~~~~l~s~~-~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v  201 (424)
                      ....++++|||+++++.. . +..|.+.|+.+.           +.+..+.-.. ...-... .+   .....-+.||..
T Consensus       106 ~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~-----------kvv~ei~vp~-~~~vy~t-~e---~~~~~~~~Dg~~  169 (352)
T TIGR02658       106 YPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGK-----------AFVRMMDVPD-CYHIFPT-AN---DTFFMHCRDGSL  169 (352)
T ss_pred             ccceEEECCCCCEEEEecCCCCCEEEEEECCCC-----------cEEEEEeCCC-CcEEEEe-cC---CccEEEeecCce
Confidence            344789999999988765 3 688999999663           2233332211 1000111 11   111122334443


Q ss_pred             EEEecCC-Ccee-eeee--cC--cce-eEEEECC-CCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeee----cccC
Q 014475          202 KVWSLLK-GRLL-RNIV--FP--SVI-DAIALDP-AEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSL----SDHS  269 (424)
Q Consensus       202 ~iwd~~~-~~~~-~~~~--~~--~~i-~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~----~~~~  269 (424)
                      ....+.+ ++.. ....  +.  .++ ..-.+.+ +++++++... |.|++.|+......... .+..+..-    .-..
T Consensus       170 ~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~-~~~~~~~~~~~~~wrP  247 (352)
T TIGR02658       170 AKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLP-AIEAFTEAEKADGWRP  247 (352)
T ss_pred             EEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecc-eeeeccccccccccCC
Confidence            3322221 1111 1100  11  000 0003455 8888887776 99999997654322110 01111100    0123


Q ss_pred             cCeEEEEecC-CCEEEEeC----------CCCcEEEEeCCCCcEEEEEeccCCCeeEEEEEecCc-eeeecc-CCCceee
Q 014475          270 KAVTCLAYST-GDLLISGS----------EDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPL-YLNLGS-FSNPHTS  336 (424)
Q Consensus       270 ~~i~~~~~~~-~~~l~t~~----------~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~-~l~~~~-~d~~i~i  336 (424)
                      +.+.-+++++ ++.++...          ..+.|.++|..+++.+..+.. ...+..++++||++ .|.+.. .++.|.+
T Consensus       248 ~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~v-G~~~~~iavS~Dgkp~lyvtn~~s~~VsV  326 (352)
T TIGR02658       248 GGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIEL-GHEIDSINVSQDAKPLLYALSTGDKTLYI  326 (352)
T ss_pred             CcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeC-CCceeeEEECCCCCeEEEEeCCCCCcEEE
Confidence            4445599998 66666532          225799999999999999884 46889999999999 776555 6788999


Q ss_pred             ccCCCCCCCC
Q 014475          337 SRRHGSQLPP  346 (424)
Q Consensus       337 w~~~~~~~~~  346 (424)
                      .|..+.+...
T Consensus       327 iD~~t~k~i~  336 (352)
T TIGR02658       327 FDAETGKELS  336 (352)
T ss_pred             EECcCCeEEe
Confidence            9998776543

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=99.47  E-value=2.4e-11  Score=107.02  Aligned_cols=312  Identities=13%  Similarity=0.121  Sum_probs=196.1

Q ss_pred             EEEeecCCCCCceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCCC----------ceeEEEEECCCCc
Q 014475            3 LLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSAS----------SGSILYWSWSKPQ   72 (424)
Q Consensus         3 ~~lat~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~----------~g~i~vwd~~~~~   72 (424)
                      .||+|-. ..| |.+|-=++-..++.+. |    ..|..+.  |||..++|++-+..          ...+.|||+.++.
T Consensus       223 TYL~t~H-k~G-I~lWGG~~f~r~~RF~-H----p~Vq~id--fSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~  293 (698)
T KOG2314|consen  223 TYLVTFH-KQG-IALWGGESFDRIQRFY-H----PGVQFID--FSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGL  293 (698)
T ss_pred             eEEEEEe-ccc-eeeecCccHHHHHhcc-C----CCceeee--cCCccceEEEecCCccccCcccCCCceEEEEEccccc
Confidence            4666666 443 7788766555555542 2    4588888  99999999987632          2679999999987


Q ss_pred             eeeeecC---CC-CeeEEEECCCCCEEEEecCCCcEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEeeCC-----
Q 014475           73 VEVKSLP---AE-PIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSED-----  143 (424)
Q Consensus        73 ~~~~~~~---~~-~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d-----  143 (424)
                      .......   .. .-.-..||.|++++|--..+ .|.||+..+-.++..-.-.-..|....|+|.++.||--...     
T Consensus       294 lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~-sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwtpe~~~~p  372 (698)
T KOG2314|consen  294 LKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGN-SISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTPETNNIP  372 (698)
T ss_pred             hhcceeccCCCccccceEEeccCCceeEEeccc-eEEEEecCceeeecccccCCccccCcccCCCcceEEEEcccccCCc
Confidence            6533221   12 22356799999999987764 69999977644433223344678899999987776643221     


Q ss_pred             CcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEE----------eCCCcEEEEecCCCc-ee
Q 014475          144 GCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSA----------SEDRTCKVWSLLKGR-LL  212 (424)
Q Consensus       144 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~----------~~d~~v~iwd~~~~~-~~  212 (424)
                      .++.+-.+.           ....+++..-++-.=..+.|-.+|  .+|+.-          +.-..+.|+.++... ++
T Consensus       373 arvtL~evP-----------s~~~iRt~nlfnVsDckLhWQk~g--dyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpv  439 (698)
T KOG2314|consen  373 ARVTLMEVP-----------SKREIRTKNLFNVSDCKLHWQKSG--DYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPV  439 (698)
T ss_pred             ceEEEEecC-----------ccceeeeccceeeeccEEEeccCC--cEEEEEEEeeccccccceEeeEEEEEeeccCCCc
Confidence            223444442           222233222222222223343444  565532          122245666666544 34


Q ss_pred             eeeecCcceeEEEECCCCCEEEEEeC---CCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeC-
Q 014475          213 RNIVFPSVIDAIALDPAEHVFYAGSR---DGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGS-  287 (424)
Q Consensus       213 ~~~~~~~~i~~~~~~~~~~~l~~~~~---dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~-  287 (424)
                      ........+...+|-|.|..+++-+.   ..++.+|.+.+...     .+..+..+..  ...+.+.|+| |++++.+. 
T Consensus       440 e~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~-----~~~lVk~~dk--~~~N~vfwsPkG~fvvva~l  512 (698)
T KOG2314|consen  440 EVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIK-----KPSLVKELDK--KFANTVFWSPKGRFVVVAAL  512 (698)
T ss_pred             eeeecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCC-----chhhhhhhcc--cccceEEEcCCCcEEEEEEe
Confidence            45557889999999999998877553   35788898875321     1233444432  5567899999 99888764 


Q ss_pred             --CCCcEEEEeCCCCcEEEEEeccCCCeeEEEEEecCceeeeccC------CCceeeccCCCCCC
Q 014475          288 --EDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSF------SNPHTSSRRHGSQL  344 (424)
Q Consensus       288 --~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~------d~~i~iw~~~~~~~  344 (424)
                        ..|.+.++|+.-..+..+-.......+.+.|.|.|+|+++++.      |.--++|+..+..+
T Consensus       513 ~s~~g~l~F~D~~~a~~k~~~~~eh~~at~veWDPtGRYvvT~ss~wrhk~d~GYri~tfqGrll  577 (698)
T KOG2314|consen  513 VSRRGDLEFYDTDYADLKDTASPEHFAATEVEWDPTGRYVVTSSSSWRHKVDNGYRIFTFQGRLL  577 (698)
T ss_pred             cccccceEEEecchhhhhhccCccccccccceECCCCCEEEEeeehhhhccccceEEEEeecHHH
Confidence              5789999998853333322222235688999999999999874      44466777776543

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.47  E-value=1.1e-11  Score=110.05  Aligned_cols=191  Identities=16%  Similarity=0.160  Sum_probs=150.2

Q ss_pred             cCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEE------------------cCceeEEE
Q 014475          132 EDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGY------------------GGVSATIV  193 (424)
Q Consensus       132 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~------------------~~~~~~l~  193 (424)
                      |...++|....||.+++||..++....+..     +.   ..-.+..++..|.-                  .++...++
T Consensus         3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~-----p~---~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lv   74 (541)
T KOG4547|consen    3 PALDYFALSTGDGRLRIWDTAKNQLQQEFA-----PI---ASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLV   74 (541)
T ss_pred             chhheEeecCCCCeEEEEEccCceeeeeec-----cc---hhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEE
Confidence            456789999999999999997643211110     01   11122333333321                  12226788


Q ss_pred             EEeCCCcEEEEecCCCceeeeee---cCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCc
Q 014475          194 SASEDRTCKVWSLLKGRLLRNIV---FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSK  270 (424)
Q Consensus       194 ~~~~d~~v~iwd~~~~~~~~~~~---~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~  270 (424)
                      -|...|.|.+|+...++....+.   |.+.++++.++.+-..|.+++.|+.+..|+....         ..+........
T Consensus        75 lgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~---------~~~~~~~~~~~  145 (541)
T KOG4547|consen   75 LGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEK---------VIIRIWKEQKP  145 (541)
T ss_pred             eecCCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccc---------eeeeeeccCCC
Confidence            89999999999999999988887   8899999999999999999999999999999986         56777778888


Q ss_pred             CeEEEEecC-CCEEEEeCCCCcEEEEeCCCCcEEEEEeccCCCeeEEEEEec-----Cceee-eccCCCceeeccCCC
Q 014475          271 AVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRR-----PLYLN-LGSFSNPHTSSRRHG  341 (424)
Q Consensus       271 ~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~-----~~~l~-~~~~d~~i~iw~~~~  341 (424)
                      .+.+++.+| +..+++++  +.|++||+++++.+.+|.+|.++|++++|..+     |.+++ +...+..+.+|-+..
T Consensus       146 ~~~sl~is~D~~~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~  221 (541)
T KOG4547|consen  146 LVSSLCISPDGKILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK  221 (541)
T ss_pred             ccceEEEcCCCCEEEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence            899999999 89999886  57999999999999999999999999999987     55554 455666788887764

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=99.46  E-value=4.1e-11  Score=108.80  Aligned_cols=280  Identities=15%  Similarity=0.141  Sum_probs=187.7

Q ss_pred             eEEEeecCCCCCceEEEeCCCCceEEEe------------eCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECC
Q 014475            2 ELLIASSSVADTGIGCWDLESGAEQLRY------------KSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWS   69 (424)
Q Consensus         2 e~~lat~~~~dg~i~vwd~~~~~~~~~~------------~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~   69 (424)
                      +.++|.|+ .||.++|-.+.+...-...            +...+|...|..+.  |..+.+.|-++..+ |.|.||-+-
T Consensus        26 ~gyIAcgG-~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvT--WNe~~QKLTtSDt~-GlIiVWmly  101 (1189)
T KOG2041|consen   26 SGYIACGG-ADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVT--WNENNQKLTTSDTS-GLIIVWMLY  101 (1189)
T ss_pred             CCeEEecc-ccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEE--eccccccccccCCC-ceEEEEeee
Confidence            36899999 9999999988764322111            22345667777777  99888888877776 999999998


Q ss_pred             CCcee---eeecCCCCeeEEEECCCCCEEEEecCCCcEEEEEccCccee-eeeccccCCeEEEEEccCCcEEEEeeCCCc
Q 014475           70 KPQVE---VKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLL-KKWHAHYRAVTCLVFSEDGSFLISGSEDGC  145 (424)
Q Consensus        70 ~~~~~---~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~-~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~  145 (424)
                      ++...   ........|.+++|+.||..++..-.||.|.+=.++..+.- +.+++  .....+.|++|.+.++.+-.+|.
T Consensus       102 kgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg--~~l~hv~ws~D~~~~Lf~~ange  179 (1189)
T KOG2041|consen  102 KGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKG--QLLAHVLWSEDLEQALFKKANGE  179 (1189)
T ss_pred             cccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcch--heccceeecccHHHHHhhhcCCc
Confidence            77643   33445778999999999999999999999988766433221 12222  22347899999999888889999


Q ss_pred             EEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEc------CceeEEEEEeCCCcEEEEecCCCceeeeeecCc
Q 014475          146 VRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYG------GVSATIVSASEDRTCKVWSLLKGRLLRNIVFPS  219 (424)
Q Consensus       146 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~------~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~  219 (424)
                      +.++|.+......-.....-.....+......|..+.|...      .+...|+.+...|.+.|-.-.+......+..+.
T Consensus       180 ~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~Pvv~dtgm  259 (1189)
T KOG2041|consen  180 THLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEPVVVDTGM  259 (1189)
T ss_pred             EEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCCCCeEEeccc
Confidence            99999865432111100000001112222334556666421      112689999999999887665555555566678


Q ss_pred             ceeEEEECCCCCEEEEEeCCC---------cEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCC
Q 014475          220 VIDAIALDPAEHVFYAGSRDG---------SIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSED  289 (424)
Q Consensus       220 ~i~~~~~~~~~~~l~~~~~dg---------~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~d  289 (424)
                      .+....|+++|..|++++.+.         .|.+|..-.          +.+.+++.....|++++|-. |-.++.+ .|
T Consensus       260 ~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp~G----------~i~gtlkvpg~~It~lsWEg~gLriA~A-vd  328 (1189)
T KOG2041|consen  260 KIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSPYG----------HIVGTLKVPGSCITGLSWEGTGLRIAIA-VD  328 (1189)
T ss_pred             EeecceecCCCcEEEEccCcccccCccccceEEEeccch----------hheEEEecCCceeeeeEEcCCceEEEEE-ec
Confidence            899999999999999988653         344444332          45667777788899999976 4333333 35


Q ss_pred             CcEEEEeCC
Q 014475          290 GMVRVWDPI  298 (424)
Q Consensus       290 g~i~iwd~~  298 (424)
                      +.|.+=+++
T Consensus       329 sfiyfanIR  337 (1189)
T KOG2041|consen  329 SFIYFANIR  337 (1189)
T ss_pred             ceEEEEeec
Confidence            555554443

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=99.46  E-value=1.5e-12  Score=128.66  Aligned_cols=221  Identities=17%  Similarity=0.298  Sum_probs=168.9

Q ss_pred             CccccCCCCceeEEEEECCCCceeeeecCCCCeeEEEECCCCCEEEEecCCCcEEEEEccCcceeeeec-cccCCeEEEE
Q 014475           51 QLREQPSASSGSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWH-AHYRAVTCLV  129 (424)
Q Consensus        51 ~~l~~~~~~~g~i~vwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~-~~~~~i~~~~  129 (424)
                      +....+..+ +...-|..+.... ....+-..|.++.=+|...+.++|+.||.|++|....++.+..++ .....|+.+.
T Consensus      2181 ~~~~~~n~~-~~~~tq~~~~~~~-~~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~ 2258 (2439)
T KOG1064|consen 2181 NRFTPSNLP-WLGSTQTSRGASV-MIKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSR 2258 (2439)
T ss_pred             ccCCcccCC-ccccceeccccee-EeecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhh
Confidence            333333333 5555555444333 334456788999999999999999999999999998888777664 2347899999


Q ss_pred             EccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEe---CCCcEEEEec
Q 014475          130 FSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSAS---EDRTCKVWSL  206 (424)
Q Consensus       130 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~---~d~~v~iwd~  206 (424)
                      |+.+|+.+..+..||.+.+|...            .++....+.|.....+..|-..    .+++++   .++.+.+||.
T Consensus      2259 f~~qGnk~~i~d~dg~l~l~q~~------------pk~~~s~qchnk~~~Df~Fi~s----~~~tag~s~d~~n~~lwDt 2322 (2439)
T KOG1064|consen 2259 FNHQGNKFGIVDGDGDLSLWQAS------------PKPYTSWQCHNKALSDFRFIGS----LLATAGRSSDNRNVCLWDT 2322 (2439)
T ss_pred             hcccCCceeeeccCCceeecccC------------CcceeccccCCccccceeeeeh----hhhccccCCCCCcccchhc
Confidence            99999999999999999999983            4456677889998888888653    455543   5778999996


Q ss_pred             CCC--ceeeeeecCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecCCCEEE
Q 014475          207 LKG--RLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTGDLLI  284 (424)
Q Consensus       207 ~~~--~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~  284 (424)
                      .-.  .......|.+.++++++.|..+.|++|+.+|.+++||++..         +....++.         +....+++
T Consensus      2323 l~~~~~s~v~~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqr---------ql~h~~~~---------~~~~~~f~ 2384 (2439)
T KOG1064|consen 2323 LLPPMNSLVHTCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQR---------QLRHTFQA---------LDTREYFV 2384 (2439)
T ss_pred             ccCcccceeeeecCCCceEEEEcCcceEEEecCCcCcEEEeehHHH---------HHHHHhhh---------hhhhheee
Confidence            532  22222449999999999999999999999999999999986         33333332         33478999


Q ss_pred             EeCCCCcEEEEeCCCCcEEEEEe
Q 014475          285 SGSEDGMVRVWDPITHNIVRMFR  307 (424)
Q Consensus       285 t~~~dg~i~iwd~~~~~~~~~~~  307 (424)
                      +|+..|.++||++.....++++.
T Consensus      2385 ~~ss~g~ikIw~~s~~~ll~~~p 2407 (2439)
T KOG1064|consen 2385 TGSSEGNIKIWRLSEFGLLHTFP 2407 (2439)
T ss_pred             ccCcccceEEEEccccchhhcCc
Confidence            99999999999999888877766

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=99.46  E-value=1.5e-10  Score=101.17  Aligned_cols=283  Identities=15%  Similarity=0.184  Sum_probs=193.0

Q ss_pred             CceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCcee---eeecCCCCeeEEEEC
Q 014475           13 TGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVE---VKSLPAEPIKPIAAN   89 (424)
Q Consensus        13 g~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~---~~~~~~~~v~~~~~s   89 (424)
                      ..+.+||+.+|..+..+.....+-.+-..+.  |+.+.+++|-...  ..++++++ ++...   ........|....|+
T Consensus       108 n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k--~s~~D~y~ARvv~--~sl~i~e~-t~n~~~~p~~~lr~~gi~dFsis  182 (561)
T COG5354         108 NNVFVWDIASGMIVFSFNGISQPYLGWPVLK--FSIDDKYVARVVG--SSLYIHEI-TDNIEEHPFKNLRPVGILDFSIS  182 (561)
T ss_pred             CceeEEeccCceeEeeccccCCcccccceee--eeecchhhhhhcc--CeEEEEec-CCccccCchhhccccceeeEEec
Confidence            4699999999999998876654422222455  9999999887755  68999997 33332   222235678899999


Q ss_pred             CCC--CEEEE-----ecCCCcEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEee-----------CCCcEEEEeC
Q 014475           90 SHG--TYIAG-----GGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGS-----------EDGCVRIWSL  151 (424)
Q Consensus        90 ~~~--~~l~~-----~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~-----------~dg~i~iwd~  151 (424)
                      |.+  ..||.     .+..+++++|.+..+..+.+-.-..-.=..+.|.+.|++|+.--           ....++++++
T Consensus       183 P~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~  262 (561)
T COG5354         183 PEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRI  262 (561)
T ss_pred             CCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEee
Confidence            963  33443     35678899999987766655433333335688899888766421           1245778877


Q ss_pred             CcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeeecCcceeEEEECCCCC
Q 014475          152 LTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEH  231 (424)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~  231 (424)
                      ..          .  -+.......++|.+.+|.|.+.+--+++|..+-.+.++|++..  +.....+..=+.+.|+|.++
T Consensus       263 ~e----------~--~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N--l~~~~Pe~~rNT~~fsp~~r  328 (561)
T COG5354         263 TE----------R--SIPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN--LRFYFPEQKRNTIFFSPHER  328 (561)
T ss_pred             cc----------c--ccceeccccccceeeeecccCCceeEEecccccceeecccccc--eEEecCCcccccccccCccc
Confidence            42          1  1122225678999999999986455566678899999999866  44444566677889999999


Q ss_pred             EEEEEeCC---CcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeC------CCCcEEEEeCCCCc
Q 014475          232 VFYAGSRD---GSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGS------EDGMVRVWDPITHN  301 (424)
Q Consensus       232 ~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~------~dg~i~iwd~~~~~  301 (424)
                      ++++++-+   |.+.+||.....        .++..+.+.  ..+-+.|+| +.++.+..      .|..|.|||+....
T Consensus       329 ~il~agF~nl~gni~i~~~~~rf--------~~~~~~~~~--n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~~  398 (561)
T COG5354         329 YILFAGFDNLQGNIEIFDPAGRF--------KVAGAFNGL--NTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGAK  398 (561)
T ss_pred             EEEEecCCccccceEEeccCCce--------EEEEEeecC--CceEeeccCCceEEEecCCCcccccCcceEEEEecCch
Confidence            99987654   689999988763        444455432  334567999 88777664      37889999986432


Q ss_pred             EEEEEeccCCCeeEEEEEecCceeeeccCCC
Q 014475          302 IVRMFRLAKGPVNNILVVRRPLYLNLGSFSN  332 (424)
Q Consensus       302 ~~~~~~~~~~~v~~l~~s~~~~~l~~~~~d~  332 (424)
                       +.       ..+.+.|.|.+++..+.+.+.
T Consensus       399 -~f-------el~~~~W~p~~~~~ttsSs~~  421 (561)
T COG5354         399 -VF-------ELTNITWDPSGQYVTTSSSCP  421 (561)
T ss_pred             -hh-------hhhhccccCCcccceeeccCC
Confidence             22       456677777777766655554

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.41  E-value=1.2e-09  Score=91.89  Aligned_cols=268  Identities=13%  Similarity=0.106  Sum_probs=176.0

Q ss_pred             eeEEEEECCCCce----eeeecCCCCeeEEEECCCCCEEEEecC---CCcEEEEEccC--ccee--eeeccccCCeEEEE
Q 014475           61 GSILYWSWSKPQV----EVKSLPAEPIKPIAANSHGTYIAGGGQ---SGDIYMWEVAS--GRLL--KKWHAHYRAVTCLV  129 (424)
Q Consensus        61 g~i~vwd~~~~~~----~~~~~~~~~v~~~~~s~~~~~l~~~~~---dg~v~iwd~~~--~~~~--~~~~~~~~~i~~~~  129 (424)
                      +-|++|++++..-    .......+.++-++|+|+++.|.++..   +|.|.-|.++.  |++.  ........+...++
T Consensus        16 ~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvs   95 (346)
T COG2706          16 QGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVS   95 (346)
T ss_pred             CceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEE
Confidence            7899999984432    233446778899999999999988754   46677777764  4432  22222334448899


Q ss_pred             EccCCcEEEEeeC-CCcEEEEeCCcccchhcccccccceEEeecCCcCc----------eeEEEEEEcCceeEEEEEeC-
Q 014475          130 FSEDGSFLISGSE-DGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLR----------ITDIVIGYGGVSATIVSASE-  197 (424)
Q Consensus       130 ~~~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~----------i~~~~~~~~~~~~~l~~~~~-  197 (424)
                      +++++++++++.. .|.|.++-+++...        .........|.++          +....+.|++  +++++..- 
T Consensus        96 vd~~g~~vf~AnY~~g~v~v~p~~~dG~--------l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~--~~l~v~DLG  165 (346)
T COG2706          96 VDEDGRFVFVANYHSGSVSVYPLQADGS--------LQPVVQVVKHTGSGPHERQESPHVHSANFTPDG--RYLVVPDLG  165 (346)
T ss_pred             ECCCCCEEEEEEccCceEEEEEcccCCc--------cccceeeeecCCCCCCccccCCccceeeeCCCC--CEEEEeecC
Confidence            9999999988865 57899998865211        1111111122222          6677888998  77777653 


Q ss_pred             CCcEEEEecCCCceeeee----ecCcceeEEEECCCCCEEEEEe-CCCcEEEEEcCCCCCCCCCcCceeeeeec---ccC
Q 014475          198 DRTCKVWSLLKGRLLRNI----VFPSVIDAIALDPAEHVFYAGS-RDGSIYIAALNAESPSTSSYGMHIIGSLS---DHS  269 (424)
Q Consensus       198 d~~v~iwd~~~~~~~~~~----~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~---~~~  269 (424)
                      -..|.+|++..+++...-    ......+.+.|+|++++.++.+ -+++|.+|..+......  ...+.+..+.   ...
T Consensus       166 ~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~--~~lQ~i~tlP~dF~g~  243 (346)
T COG2706         166 TDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKF--EELQTIDTLPEDFTGT  243 (346)
T ss_pred             CceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceE--EEeeeeccCccccCCC
Confidence            346999999977654332    3567789999999999988766 57899999998852111  0111122221   123


Q ss_pred             cCeEEEEecC-CCEEEEeCC-CCcEEEEeCCCC-cEEEE---EeccCCCeeEEEEEecCceeeeccCCC-ceeeccCC
Q 014475          270 KAVTCLAYST-GDLLISGSE-DGMVRVWDPITH-NIVRM---FRLAKGPVNNILVVRRPLYLNLGSFSN-PHTSSRRH  340 (424)
Q Consensus       270 ~~i~~~~~~~-~~~l~t~~~-dg~i~iwd~~~~-~~~~~---~~~~~~~v~~l~~s~~~~~l~~~~~d~-~i~iw~~~  340 (424)
                      ....++..++ |++|.++.. ...|.+|.+... ..+..   ...+...-+...|++.+++|+++..++ .|.++...
T Consensus       244 ~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d  321 (346)
T COG2706         244 NWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERD  321 (346)
T ss_pred             CceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEc
Confidence            4567788899 998888763 347888877643 22222   222333468899999999998877555 57777665

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=99.39  E-value=1.6e-10  Score=92.90  Aligned_cols=235  Identities=10%  Similarity=0.019  Sum_probs=158.0

Q ss_pred             EEEeecCCCCCceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCceeeeec-CCC
Q 014475            3 LLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSL-PAE   81 (424)
Q Consensus         3 ~~lat~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~~~-~~~   81 (424)
                      .+||.|+ +-|...+|...+.+....  .+..+.+.|.-+. ++......+..++.| .++++.+++.+....... ..-
T Consensus        85 ~~la~gG-~~g~fd~~~~~tn~~h~~--~cd~snn~v~~~~-r~cd~~~~~~i~snd-ht~k~~~~~~~s~~~~~h~~~~  159 (344)
T KOG4532|consen   85 VTLADGG-ASGQFDLFACNTNDGHLY--QCDVSNNDVTLVK-RYCDLKFPLNIASND-HTGKTMVVSGDSNKFAVHNQNL  159 (344)
T ss_pred             cEEEecc-ccceeeeecccCccccee--eecccccchhhhh-hhcccccceeeccCC-cceeEEEEecCcccceeecccc
Confidence            5899999 999999999987665533  3444556555443 122223344455555 888888877554332221 113


Q ss_pred             CeeEEEECCCCCEEEEecCCCcEEEEEccCc-cee-e-eeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchh
Q 014475           82 PIKPIAANSHGTYIAGGGQSGDIYMWEVASG-RLL-K-KWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEEC  158 (424)
Q Consensus        82 ~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~-~~~-~-~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~  158 (424)
                      .+.++++++|++++++.+....|..|.+... +.+ . ......+.-.+..|+.....+|++..||++.|||++....+-
T Consensus       160 ~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm  239 (344)
T KOG4532|consen  160 TQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPM  239 (344)
T ss_pred             ceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccch
Confidence            4899999999999999999999999998654 222 2 223344556788999999999999999999999998743221


Q ss_pred             cccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeeecC---------cceeEEEECCC
Q 014475          159 ESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFP---------SVIDAIALDPA  229 (424)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~---------~~i~~~~~~~~  229 (424)
                      ..      ...+-..|.+.+..+.|++.+.-.+|+..-.-+.+.+.|+++++..+.+..+         ..|...+|+.+
T Consensus       240 ~~------~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~  313 (344)
T KOG4532|consen  240 AE------ISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNE  313 (344)
T ss_pred             hh------hcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCccccccccccccccccccCC
Confidence            11      1122345899999999998776677777777889999999998776665422         22555666666


Q ss_pred             CCEEEEEeCCCcEEEEEcCC
Q 014475          230 EHVFYAGSRDGSIYIAALNA  249 (424)
Q Consensus       230 ~~~l~~~~~dg~i~i~d~~~  249 (424)
                      +..+.+.+.+ .+.-|++..
T Consensus       314 n~s~~v~~e~-~~ae~ni~s  332 (344)
T KOG4532|consen  314 NESNDVKNEL-QGAEYNILS  332 (344)
T ss_pred             Ccccccccch-hhheeeccc
Confidence            5555544432 234444443

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.38  E-value=3e-10  Score=100.44  Aligned_cols=275  Identities=9%  Similarity=0.171  Sum_probs=183.1

Q ss_pred             CceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCceeeeecCCCCeeEEEECCCC
Q 014475           13 TGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSLPAEPIKPIAANSHG   92 (424)
Q Consensus        13 g~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~~~~~~~v~~~~~s~~~   92 (424)
                      -.+.+|+++++.....+.....  .+ .+..  |++|..+.+--..  +.+++|+..+.+......|...|+.+.+||.+
T Consensus       105 pn~~v~~vet~~~~s~~q~k~Q--~~-W~~q--fs~dEsl~arlv~--nev~f~~~~~f~~~~~kl~~~~i~~f~lSpgp  177 (566)
T KOG2315|consen  105 PNVLVYNVETGVQRSQIQKKMQ--NG-WVPQ--FSIDESLAARLVS--NEVQFYDLGSFKTIQHKLSVSGITMLSLSPGP  177 (566)
T ss_pred             Cceeeeeeccceehhheehhhh--cC-cccc--cccchhhhhhhhc--ceEEEEecCCccceeeeeeccceeeEEecCCC
Confidence            3477999999766655543321  11 4666  9998887665555  79999999987777777889999999999963


Q ss_pred             --CEEEE-----ecCCCcEEEEEccCcceeeee--cc-ccCCeEEEEEccCCcE-EEEeeC--C---------CcEEEEe
Q 014475           93 --TYIAG-----GGQSGDIYMWEVASGRLLKKW--HA-HYRAVTCLVFSEDGSF-LISGSE--D---------GCVRIWS  150 (424)
Q Consensus        93 --~~l~~-----~~~dg~v~iwd~~~~~~~~~~--~~-~~~~i~~~~~~~~~~~-l~s~~~--d---------g~i~iwd  150 (424)
                        ..+|+     .+.-+.|+||..........+  +. ....=..+.|++-|.- |+.++.  |         .++++.+
T Consensus       178 ~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~  257 (566)
T KOG2315|consen  178 EPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLA  257 (566)
T ss_pred             CCceEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEE
Confidence              34443     355567999987633221111  10 1222345778775543 332222  2         3466776


Q ss_pred             CCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeeecCcceeEEEECCCC
Q 014475          151 LLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAE  230 (424)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~i~~~~~~~~~  230 (424)
                      ++.           .. ...--...++|.++.|++++..--++.|-.-..+.|+|++ +.++..+ ..++-+++-|+|.|
T Consensus       258 t~g-----------~s-~~V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df-~egpRN~~~fnp~g  323 (566)
T KOG2315|consen  258 TQG-----------ES-VSVPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDF-PEGPRNTAFFNPHG  323 (566)
T ss_pred             ecC-----------ce-EEEecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeC-CCCCccceEECCCC
Confidence            641           11 1112235789999999999954445566678899999986 4555444 45677889999999


Q ss_pred             CEEEEEeC---CCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCC------CCcEEEEeCCCC
Q 014475          231 HVFYAGSR---DGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSE------DGMVRVWDPITH  300 (424)
Q Consensus       231 ~~l~~~~~---dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~------dg~i~iwd~~~~  300 (424)
                      ++++.++-   .|.+.+||..+.         +.+..+..  ..-+-+.|+| |++|+|+..      |+.++||+.. |
T Consensus       324 ~ii~lAGFGNL~G~mEvwDv~n~---------K~i~~~~a--~~tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwhyt-G  391 (566)
T KOG2315|consen  324 NIILLAGFGNLPGDMEVWDVPNR---------KLIAKFKA--ANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYT-G  391 (566)
T ss_pred             CEEEEeecCCCCCceEEEeccch---------hhcccccc--CCceEEEEcCCCcEEEEEeccccEEecCCeEEEEec-C
Confidence            99988765   478999999985         44555543  3345578999 999999874      7889999964 7


Q ss_pred             cEEEEEeccCCCeeEEEEEec
Q 014475          301 NIVRMFRLAKGPVNNILVVRR  321 (424)
Q Consensus       301 ~~~~~~~~~~~~v~~l~~s~~  321 (424)
                      ..+..-.-.. +...+.|-|-
T Consensus       392 ~~l~~~~f~s-EL~qv~W~P~  411 (566)
T KOG2315|consen  392 SLLHEKMFKS-ELLQVEWRPF  411 (566)
T ss_pred             ceeehhhhhH-hHhheeeeec
Confidence            7665443221 5777788763

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=99.37  E-value=2.7e-10  Score=100.59  Aligned_cols=251  Identities=14%  Similarity=0.161  Sum_probs=165.7

Q ss_pred             CceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCcee-eeecCCCCeeEEEECCC
Q 014475           13 TGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVE-VKSLPAEPIKPIAANSH   91 (424)
Q Consensus        13 g~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~-~~~~~~~~v~~~~~s~~   91 (424)
                      ..++|||+.+|...+.+.....+-..-...  +||.|++++|--..  ..|.|++..+-.+. .+...-..|....|+|.
T Consensus       282 ~~l~IWDI~tG~lkrsF~~~~~~~~~WP~f--rWS~DdKy~Arm~~--~sisIyEtpsf~lld~Kslki~gIr~FswsP~  357 (698)
T KOG2314|consen  282 QQLIIWDIATGLLKRSFPVIKSPYLKWPIF--RWSHDDKYFARMTG--NSISIYETPSFMLLDKKSLKISGIRDFSWSPT  357 (698)
T ss_pred             ceEEEEEccccchhcceeccCCCccccceE--EeccCCceeEEecc--ceEEEEecCceeeecccccCCccccCcccCCC
Confidence            469999999999999887654332222333  49999999998877  58999998774433 23445678999999999


Q ss_pred             CCEEEEecC-----CCcEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEee----------CCCcEEEEeCCcccc
Q 014475           92 GTYIAGGGQ-----SGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGS----------EDGCVRIWSLLTVFE  156 (424)
Q Consensus        92 ~~~l~~~~~-----dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~----------~dg~i~iwd~~~~~~  156 (424)
                      ++.||.=..     -..+.+-.+.+++.+++-+-|+-.=..+.|-.+|.+|+.--          .-..+-|+.++.   
T Consensus       358 ~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrire---  434 (698)
T KOG2314|consen  358 SNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIRE---  434 (698)
T ss_pred             cceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeec---
Confidence            998886432     23477778888877777665554444567777888876431          112345555533   


Q ss_pred             hhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeC---CCcEEEEecCC-Cc---eeeeeecCcceeEEEECCC
Q 014475          157 ECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASE---DRTCKVWSLLK-GR---LLRNIVFPSVIDAIALDPA  229 (424)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~---d~~v~iwd~~~-~~---~~~~~~~~~~i~~~~~~~~  229 (424)
                             +..++... .-...|...+|-|.|+  .+++-+.   ..++.+|-+++ ..   .+..+ .....+.+.|+|.
T Consensus       435 -------KdIpve~v-elke~vi~FaWEP~gd--kF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~-dk~~~N~vfwsPk  503 (698)
T KOG2314|consen  435 -------KDIPVEVV-ELKESVIAFAWEPHGD--KFAVISGNTVKNTVSFYAVETNIKKPSLVKEL-DKKFANTVFWSPK  503 (698)
T ss_pred             -------cCCCceee-ecchheeeeeeccCCC--eEEEEEccccccceeEEEeecCCCchhhhhhh-cccccceEEEcCC
Confidence                   22222222 2345777888999884  4443332   35688888873 22   22222 2356789999999


Q ss_pred             CCEEEEE---eCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCCC
Q 014475          230 EHVFYAG---SRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDG  290 (424)
Q Consensus       230 ~~~l~~~---~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg  290 (424)
                      |++++++   +..|.+..+|+.....       + ......| ...+.+.|.| |+|++|++.-.
T Consensus       504 G~fvvva~l~s~~g~l~F~D~~~a~~-------k-~~~~~eh-~~at~veWDPtGRYvvT~ss~w  559 (698)
T KOG2314|consen  504 GRFVVVAALVSRRGDLEFYDTDYADL-------K-DTASPEH-FAATEVEWDPTGRYVVTSSSSW  559 (698)
T ss_pred             CcEEEEEEecccccceEEEecchhhh-------h-hccCccc-cccccceECCCCCEEEEeeehh
Confidence            9998875   4578999999986321       1 1111223 3457789999 99999998644

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=99.37  E-value=1.4e-09  Score=94.40  Aligned_cols=208  Identities=12%  Similarity=0.035  Sum_probs=147.0

Q ss_pred             CCceEEEeCCCCceEEEeeCC----CCCCCceE--Eec--ceee-cCCCccccCCCCceeEEEEECCCCceeeeecCCCC
Q 014475           12 DTGIGCWDLESGAEQLRYKSC----ASPPHGLA--CVG--QRFL-ASSQLREQPSASSGSILYWSWSKPQVEVKSLPAEP   82 (424)
Q Consensus        12 dg~i~vwd~~~~~~~~~~~~~----~~~~~~v~--~~~--~~~~-~~~~~l~~~~~~~g~i~vwd~~~~~~~~~~~~~~~   82 (424)
                      .|.|.++|.++....+ +.-.    ........  .+.  ..|+ .+|.+++..+.  |...+.+...+ ..+...+.+.
T Consensus       286 ~GdIylydP~td~lek-ldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSR--GkaFi~~~~~~-~~iqv~~~~~  361 (668)
T COG4946         286 AGDIYLYDPETDSLEK-LDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSR--GKAFIMRPWDG-YSIQVGKKGG  361 (668)
T ss_pred             CCcEEEeCCCcCccee-eecCCccccccccccccCHHHhhhhhccCCCcEEEEEec--CcEEEECCCCC-eeEEcCCCCc
Confidence            4789999987655432 3211    01111111  111  0122 35777777776  77777765433 3355567777


Q ss_pred             eeEEEECCCCCEEEEecCCC-cEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhccc
Q 014475           83 IKPIAANSHGTYIAGGGQSG-DIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQ  161 (424)
Q Consensus        83 v~~~~~s~~~~~l~~~~~dg-~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~  161 (424)
                      |.-..+.-+++-++.|..|| .+-|+|.++++. ..+...-+.|.++..+++|++++++-....+.+.|++++..     
T Consensus       362 VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~-kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv-----  435 (668)
T COG4946         362 VRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEV-KRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNV-----  435 (668)
T ss_pred             eEEEEEccCCcceEEeccCCceEEEEecCCceE-EEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCe-----
Confidence            99999988888999999999 899999877764 45556778899999999999999998888899999977421     


Q ss_pred             ccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCC----cEEEEecCCCceeeeeecCcceeEEEECCCCCEEEEEe
Q 014475          162 RASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDR----TCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGS  237 (424)
Q Consensus       162 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~----~v~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  237 (424)
                            ...-+...+-|+...|+|++  .+++-+--+|    .|+++|+..++........+.-.+-+|.|++++|+--+
T Consensus       436 ------~~idkS~~~lItdf~~~~ns--r~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~ta~DfsPaFD~d~ryLYfLs  507 (668)
T COG4946         436 ------RLIDKSEYGLITDFDWHPNS--RWIAYAFPEGYYTQSIKLYDMDGGKIYDVTTPTAYDFSPAFDPDGRYLYFLS  507 (668)
T ss_pred             ------eEecccccceeEEEEEcCCc--eeEEEecCcceeeeeEEEEecCCCeEEEecCCcccccCcccCCCCcEEEEEe
Confidence                  22224456789999999998  8998776655    68999999888766655555566778999999877544

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=99.37  E-value=1.5e-10  Score=105.28  Aligned_cols=276  Identities=13%  Similarity=0.160  Sum_probs=199.8

Q ss_pred             CceEEecceeecCCCccccCCCCceeEEEEECCCCcee----------------eeecCCCCeeEEEECCCCCEEEEecC
Q 014475           37 HGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVE----------------VKSLPAEPIKPIAANSHGTYIAGGGQ  100 (424)
Q Consensus        37 ~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~----------------~~~~~~~~v~~~~~s~~~~~l~~~~~  100 (424)
                      ..+.|++  |.....+++++|.+ |.++|-.+.+....                ...+|.+.|.-+.|+.+.+.|-+...
T Consensus        15 vkL~c~~--WNke~gyIAcgG~d-GlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt   91 (1189)
T KOG2041|consen   15 VKLHCAE--WNKESGYIACGGAD-GLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDT   91 (1189)
T ss_pred             ceEEEEE--EcccCCeEEecccc-ceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCC
Confidence            4578888  99999999999998 99999988653311                12357889999999999999999999


Q ss_pred             CCcEEEEEccCcceeeee--ccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCce
Q 014475          101 SGDIYMWEVASGRLLKKW--HAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRI  178 (424)
Q Consensus       101 dg~v~iwd~~~~~~~~~~--~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i  178 (424)
                      +|.|.+|-+-.|.-...+  ....+.|.+++|..+|..+.....||.|.+=.++.          ....-+.+++  ...
T Consensus        92 ~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdG----------NRIwgKeLkg--~~l  159 (1189)
T KOG2041|consen   92 SGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDG----------NRIWGKELKG--QLL  159 (1189)
T ss_pred             CceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeecc----------ceecchhcch--hec
Confidence            999999999888655443  23456789999999999999999999998877743          1112222222  123


Q ss_pred             eEEEEEEcCceeEEEEEeCCCcEEEEecCCC-------ceeeeee-----cCcceeEEEEC--------CCCCEEEEEeC
Q 014475          179 TDIVIGYGGVSATIVSASEDRTCKVWSLLKG-------RLLRNIV-----FPSVIDAIALD--------PAEHVFYAGSR  238 (424)
Q Consensus       179 ~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~-------~~~~~~~-----~~~~i~~~~~~--------~~~~~l~~~~~  238 (424)
                      ..+.|+++.  ..++.+-..|.+.++|....       .+.....     .+..+..++|.        |+...|+++..
T Consensus       160 ~hv~ws~D~--~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~  237 (1189)
T KOG2041|consen  160 AHVLWSEDL--EQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYA  237 (1189)
T ss_pred             cceeecccH--HHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEc
Confidence            367889887  77788888899999996532       1111111     23446666664        57788999999


Q ss_pred             CCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCC---------CcEEEEeCCCCcEEEEEec
Q 014475          239 DGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSED---------GMVRVWDPITHNIVRMFRL  308 (424)
Q Consensus       239 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~d---------g~i~iwd~~~~~~~~~~~~  308 (424)
                      +|.+.+..-.+..        .++..  ...-.+..+.|++ |..|+.++.+         +.|.+|. .-|+.+.+++.
T Consensus       238 nGr~QiMR~eND~--------~Pvv~--dtgm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fys-p~G~i~gtlkv  306 (1189)
T KOG2041|consen  238 NGRMQIMRSENDP--------EPVVV--DTGMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYS-PYGHIVGTLKV  306 (1189)
T ss_pred             CceehhhhhcCCC--------CCeEE--ecccEeecceecCCCcEEEEccCcccccCccccceEEEec-cchhheEEEec
Confidence            9998887655432        22222  2236688899999 9999998753         2566666 44888999998


Q ss_pred             cCCCeeEEEEEecCceeeeccCCCceeeccCCC
Q 014475          309 AKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHG  341 (424)
Q Consensus       309 ~~~~v~~l~~s~~~~~l~~~~~d~~i~iw~~~~  341 (424)
                      ....|++++|-..|-.+|.+ .|+.|.+=+++.
T Consensus       307 pg~~It~lsWEg~gLriA~A-vdsfiyfanIRP  338 (1189)
T KOG2041|consen  307 PGSCITGLSWEGTGLRIAIA-VDSFIYFANIRP  338 (1189)
T ss_pred             CCceeeeeEEcCCceEEEEE-ecceEEEEeecc
Confidence            88999999998887776654 456666555553

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=99.35  E-value=1.6e-09  Score=99.37  Aligned_cols=310  Identities=12%  Similarity=0.053  Sum_probs=182.1

Q ss_pred             EEeecCCCCCceEEEeCCCCceEEEeeCCCCC-------CCceEEecceeecCCCccccCCCCceeEEEEECCCCceeee
Q 014475            4 LIASSSVADTGIGCWDLESGAEQLRYKSCASP-------PHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVK   76 (424)
Q Consensus         4 ~lat~~~~dg~i~vwd~~~~~~~~~~~~~~~~-------~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~   76 (424)
                      .+++++ .+|.+.-+|.++|+.+-+.+.....       ...+.. .  ...++..+++++.+ |.+..+|.++++..++
T Consensus        71 ~vy~~~-~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~-~--~~v~~~~v~v~~~~-g~l~ald~~tG~~~W~  145 (394)
T PRK11138         71 KVYAAD-RAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSG-G--VTVAGGKVYIGSEK-GQVYALNAEDGEVAWQ  145 (394)
T ss_pred             EEEEEC-CCCeEEEEECCCCcEeeEEcCCCccccccccccccccc-c--cEEECCEEEEEcCC-CEEEEEECCCCCCccc
Confidence            456667 7899999999999988665432210       000000 0  11234455556565 9999999999988877


Q ss_pred             ecCCCCeeEEEECCCCCEEEEecCCCcEEEEEccCcceeeeeccccCCeEE-EEEcc--CCcEEEEeeCCCcEEEEeCCc
Q 014475           77 SLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTC-LVFSE--DGSFLISGSEDGCVRIWSLLT  153 (424)
Q Consensus        77 ~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~-~~~~~--~~~~l~s~~~dg~i~iwd~~~  153 (424)
                      ......+.+--.- .+..++++..+|.+..+|.++|+.+..+......... ..-+|  .+..++.++.+|.+..+|..+
T Consensus       146 ~~~~~~~~ssP~v-~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~~~~v~~~~~~g~v~a~d~~~  224 (394)
T PRK11138        146 TKVAGEALSRPVV-SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATAFGGAIVGGDNGRVSAVLMEQ  224 (394)
T ss_pred             ccCCCceecCCEE-ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEECCEEEEEcCCCEEEEEEccC
Confidence            6554443321111 2445667778899999999999988776532111000 00111  133566777889999999877


Q ss_pred             ccchhcccccccceEEeecCCcCceeEEEEEE--cCceeEEEEEeCCCcEEEEecCCCceeeeeecCcceeEEEECCCCC
Q 014475          154 VFEECESQRASHLYLHSFTGHTLRITDIVIGY--GGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEH  231 (424)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~  231 (424)
                      +....+...........+    .....+..+|  .+  ..++.++.+|.+..+|..+++.+........ ..+.  ..+.
T Consensus       225 G~~~W~~~~~~~~~~~~~----~~~~~~~~sP~v~~--~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~-~~~~--~~~~  295 (394)
T PRK11138        225 GQLIWQQRISQPTGATEI----DRLVDVDTTPVVVG--GVVYALAYNGNLVALDLRSGQIVWKREYGSV-NDFA--VDGG  295 (394)
T ss_pred             ChhhheeccccCCCccch----hcccccCCCcEEEC--CEEEEEEcCCeEEEEECCCCCEEEeecCCCc-cCcE--EECC
Confidence            654322111000000000    0000011111  12  4677777899999999999988766543221 1111  2567


Q ss_pred             EEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecCCCEEEEeCCCCcEEEEeCCCCcEEEEEeccCC
Q 014475          232 VFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTGDLLISGSEDGMVRVWDPITHNIVRMFRLAKG  311 (424)
Q Consensus       232 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~  311 (424)
                      .+++++.+|.+..+|..++......      ... .+ ....+.... +..++.++.||.|...|..+|+.+...+....
T Consensus       296 ~vy~~~~~g~l~ald~~tG~~~W~~------~~~-~~-~~~~sp~v~-~g~l~v~~~~G~l~~ld~~tG~~~~~~~~~~~  366 (394)
T PRK11138        296 RIYLVDQNDRVYALDTRGGVELWSQ------SDL-LH-RLLTAPVLY-NGYLVVGDSEGYLHWINREDGRFVAQQKVDSS  366 (394)
T ss_pred             EEEEEcCCCeEEEEECCCCcEEEcc------ccc-CC-CcccCCEEE-CCEEEEEeCCCEEEEEECCCCCEEEEEEcCCC
Confidence            7888889999999999887421110      000 01 111111111 67888899999999999999999888775443


Q ss_pred             CeeE-EEEEecCceeeeccCCCceeeccC
Q 014475          312 PVNN-ILVVRRPLYLNLGSFSNPHTSSRR  339 (424)
Q Consensus       312 ~v~~-l~~s~~~~~l~~~~~d~~i~iw~~  339 (424)
                      .+.+ ..+  .+..|..++.||.+..++.
T Consensus       367 ~~~s~P~~--~~~~l~v~t~~G~l~~~~~  393 (394)
T PRK11138        367 GFLSEPVV--ADDKLLIQARDGTVYAITR  393 (394)
T ss_pred             cceeCCEE--ECCEEEEEeCCceEEEEeC
Confidence            3332 222  2447888899999887764

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=99.34  E-value=1.8e-09  Score=107.24  Aligned_cols=311  Identities=13%  Similarity=0.131  Sum_probs=192.6

Q ss_pred             CCCceEEE----eCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCC-------------Cc-
Q 014475           11 ADTGIGCW----DLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSK-------------PQ-   72 (424)
Q Consensus        11 ~dg~i~vw----d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~-------------~~-   72 (424)
                      .+|.|.+.    |..+...-  .  -..-..+|.+++  |+||+..++.+..+ +++.+...+-             ++ 
T Consensus        95 ~~Gdi~~~~~~~~~~~~~~E--~--VG~vd~GI~a~~--WSPD~Ella~vT~~-~~l~~mt~~fd~i~E~~l~~~~~~~~  167 (928)
T PF04762_consen   95 ASGDIILVREDPDPDEDEIE--I--VGSVDSGILAAS--WSPDEELLALVTGE-GNLLLMTRDFDPISEVPLDSDDFGES  167 (928)
T ss_pred             CCceEEEEEccCCCCCceeE--E--EEEEcCcEEEEE--ECCCcCEEEEEeCC-CEEEEEeccceEEEEeecCccccCCC
Confidence            45888888    54433222  1  112346799999  99999999999887 7777754320             00 


Q ss_pred             ---------eeeee-------------c------------CCCCeeEEEECCCCCEEEEecC---C---CcEEEEEccCc
Q 014475           73 ---------VEVKS-------------L------------PAEPIKPIAANSHGTYIAGGGQ---S---GDIYMWEVASG  112 (424)
Q Consensus        73 ---------~~~~~-------------~------------~~~~v~~~~~s~~~~~l~~~~~---d---g~v~iwd~~~~  112 (424)
                               .....             .            ..+.-..++|-.||.++|+.+.   .   ..++||+- +|
T Consensus       168 ~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~R-eG  246 (928)
T PF04762_consen  168 KHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSR-EG  246 (928)
T ss_pred             ceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECC-Cc
Confidence                     00000             0            1224467889999999998764   2   46999994 57


Q ss_pred             ceeeeeccccCCeEEEEEccCCcEEEEeeC---CCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCce
Q 014475          113 RLLKKWHAHYRAVTCLVFSEDGSFLISGSE---DGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVS  189 (424)
Q Consensus       113 ~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  189 (424)
                      ....+-..-.+--.+++|.|.|+++++...   ...|.+|.-+..        ........+......|..+.|+.++  
T Consensus       247 ~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErNGL--------rhgeF~l~~~~~~~~v~~l~Wn~ds--  316 (928)
T PF04762_consen  247 ELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERNGL--------RHGEFTLRFDPEEEKVIELAWNSDS--  316 (928)
T ss_pred             eEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecCCc--------EeeeEecCCCCCCceeeEEEECCCC--
Confidence            766555544555567999999999988765   345667764321        1111222223456788999999998  


Q ss_pred             eEEEEEeCCCcEEEEecCCCce--eeeee--cCcceeEEEECCC-CCEEEEEeCCCcEEEEEc----CCCCCCC------
Q 014475          190 ATIVSASEDRTCKVWSLLKGRL--LRNIV--FPSVIDAIALDPA-EHVFYAGSRDGSIYIAAL----NAESPST------  254 (424)
Q Consensus       190 ~~l~~~~~d~~v~iwd~~~~~~--~~~~~--~~~~i~~~~~~~~-~~~l~~~~~dg~i~i~d~----~~~~~~~------  254 (424)
                      ..|+....|. |.+|-..+..-  .+.+.  ....+..+.|+|. ...|.+.+.+|.+..+++    .......      
T Consensus       317 ~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~  395 (928)
T PF04762_consen  317 EILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGT  395 (928)
T ss_pred             CEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEecCCCCccCceE
Confidence            7888877555 99999877542  22232  3344566999994 556777777777765544    2111000      


Q ss_pred             ---------------CCcCceee-eeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCCCcE--------EEEEe--
Q 014475          255 ---------------SSYGMHII-GSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNI--------VRMFR--  307 (424)
Q Consensus       255 ---------------~~~~~~~~-~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~--------~~~~~--  307 (424)
                                     ....+.+. ...-.-..+|.+++|++ +..+++-..||.|.+|.......        ...+.  
T Consensus       396 vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~  475 (928)
T PF04762_consen  396 VAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLKNMWSVKPPKLLSSISLD  475 (928)
T ss_pred             EEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCCCCeEEEEECCCCEEEEEecCCCcccccCcchhhhcccc
Confidence                           00000111 01112357899999999 66688888999999998543221        11121  


Q ss_pred             --------ccCCCeeEEEEEecCceeeeccCC---CceeeccCC
Q 014475          308 --------LAKGPVNNILVVRRPLYLNLGSFS---NPHTSSRRH  340 (424)
Q Consensus       308 --------~~~~~v~~l~~s~~~~~l~~~~~d---~~i~iw~~~  340 (424)
                              .....+..++|..+...++....+   ..+.+++..
T Consensus       476 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  519 (928)
T PF04762_consen  476 SMDISDSELPLGSLRQLAWLNDDTLLVLSDSDSNQSKIVLVDID  519 (928)
T ss_pred             cccccccccccccEEEEEEeCCCEEEEEEecCcccceEEEEEec
Confidence                    123467889998888777665554   567777774

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.34  E-value=1.4e-11  Score=112.03  Aligned_cols=280  Identities=16%  Similarity=0.182  Sum_probs=189.0

Q ss_pred             ceEEecceeecCCCccccCCCCceeEEEEECCCCceeeeec-C--CCCeeEEEECCC--CCEEEEecCCCcEEEEEccCc
Q 014475           38 GLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSL-P--AEPIKPIAANSH--GTYIAGGGQSGDIYMWEVASG  112 (424)
Q Consensus        38 ~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~~~-~--~~~v~~~~~s~~--~~~l~~~~~dg~v~iwd~~~~  112 (424)
                      ++.++.  .+|.|+-+|.++.-  -+.+-|++.+-...+.. |  .-.|-...|+|.  ..+-++......-.+|++...
T Consensus        26 ~~~a~s--i~p~grdi~lAsr~--gl~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~s  101 (1081)
T KOG0309|consen   26 GFNAVS--INPSGRDIVLASRQ--GLYIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKS  101 (1081)
T ss_pred             ccccee--eccccchhhhhhhc--CeEEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecCcchhhhhhhhcC
Confidence            344555  88999999999885  56666776554333322 2  345777888874  334455455566788988543


Q ss_pred             ---ceeeeeccccCCeEEEEEcc-CCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCc
Q 014475          113 ---RLLKKWHAHYRAVTCLVFSE-DGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGV  188 (424)
Q Consensus       113 ---~~~~~~~~~~~~i~~~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  188 (424)
                         .....+.+|...|+.+.|+| ....+++++-|-.+..||+++          ...++..+..-......++|+... 
T Consensus       102 s~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rS----------p~~p~ys~~~w~s~asqVkwnyk~-  170 (1081)
T KOG0309|consen  102 SSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRS----------PHRPFYSTSSWRSAASQVKWNYKD-  170 (1081)
T ss_pred             CccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccC----------CCcceeeeecccccCceeeecccC-
Confidence               34456688999999999998 456789999999999999976          233444455555566778898776 


Q ss_pred             eeEEEEEeCCCcEEEEecCCCc-eeeeee-cCcceeEEEECC-CCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeee
Q 014475          189 SATIVSASEDRTCKVWSLLKGR-LLRNIV-FPSVIDAIALDP-AEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSL  265 (424)
Q Consensus       189 ~~~l~~~~~d~~v~iwd~~~~~-~~~~~~-~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~  265 (424)
                       ..+++.+..+.|.+||.+.+. ++..++ +-..++.+.|.. ....+++.+.|++++.||.......        -...
T Consensus       171 -p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e--------~~~~  241 (1081)
T KOG0309|consen  171 -PNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTE--------SKRT  241 (1081)
T ss_pred             -cchhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccc--------ccee
Confidence             456666778889999999765 444444 666777777766 4456888999999999999775421        1111


Q ss_pred             cccCcCeEEEEecC-CCEEE-----------EeCCCCcEEEEeCCC-CcEEEEEeccCCCeeEEEEEecC----------
Q 014475          266 SDHSKAVTCLAYST-GDLLI-----------SGSEDGMVRVWDPIT-HNIVRMFRLAKGPVNNILVVRRP----------  322 (424)
Q Consensus       266 ~~~~~~i~~~~~~~-~~~l~-----------t~~~dg~i~iwd~~~-~~~~~~~~~~~~~v~~l~~s~~~----------  322 (424)
                      .....+|..-.+-| ++-..           --..+.....|+..+ .+++++|.+|...|....|-..+          
T Consensus       242 vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rd  321 (1081)
T KOG0309|consen  242 VTTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRD  321 (1081)
T ss_pred             ccccCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccc
Confidence            22234454445555 22111           111223334455444 46899999999988887775433          


Q ss_pred             ceeeeccCCCceeeccCCC
Q 014475          323 LYLNLGSFSNPHTSSRRHG  341 (424)
Q Consensus       323 ~~l~~~~~d~~i~iw~~~~  341 (424)
                      -.|++-+.|..+++|-+..
T Consensus       322 fQLVTWSkD~~lrlWpI~~  340 (1081)
T KOG0309|consen  322 FQLVTWSKDQTLRLWPIDS  340 (1081)
T ss_pred             eeEEEeecCCceEeeeccH
Confidence            3689999999999998863

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=99.32  E-value=3.4e-09  Score=96.79  Aligned_cols=267  Identities=15%  Similarity=0.113  Sum_probs=164.6

Q ss_pred             CCCccccCCCCceeEEEEECCCCceeeeecCCCCee-EEEECCCCCEEEEecCCCcEEEEEccCcceeeeeccccCCeEE
Q 014475           49 SSQLREQPSASSGSILYWSWSKPQVEVKSLPAEPIK-PIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTC  127 (424)
Q Consensus        49 ~~~~l~~~~~~~g~i~vwd~~~~~~~~~~~~~~~v~-~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~  127 (424)
                      .+..+++++.+ |.|..+|..+++..+.......+. ...  .++..+++++.+|.+..+|.++|+.+....... .+.+
T Consensus        64 ~~~~v~v~~~~-g~v~a~d~~tG~~~W~~~~~~~~~~~p~--v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~-~~~~  139 (377)
T TIGR03300        64 AGGKVYAADAD-GTVVALDAETGKRLWRVDLDERLSGGVG--ADGGLVFVGTEKGEVIALDAEDGKELWRAKLSS-EVLS  139 (377)
T ss_pred             ECCEEEEECCC-CeEEEEEccCCcEeeeecCCCCcccceE--EcCCEEEEEcCCCEEEEEECCCCcEeeeeccCc-eeec
Confidence            35566677666 999999999988877655444332 222  246778888899999999999999887654322 2221


Q ss_pred             EEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecC
Q 014475          128 LVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLL  207 (424)
Q Consensus       128 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~  207 (424)
                      .-.. .+..++.++.+|.+..||.+++....+.......  ........+    .. .+   ..++.+..++.+..+|.+
T Consensus       140 ~p~v-~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~--~~~~~~~sp----~~-~~---~~v~~~~~~g~v~ald~~  208 (377)
T TIGR03300       140 PPLV-ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPA--LTLRGSASP----VI-AD---GGVLVGFAGGKLVALDLQ  208 (377)
T ss_pred             CCEE-ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCc--eeecCCCCC----EE-EC---CEEEEECCCCEEEEEEcc
Confidence            1111 2446777788999999999775432221110000  000001111    11 12   356778888999999999


Q ss_pred             CCceeeeeecCcc--------eeEEEECC--CCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEe
Q 014475          208 KGRLLRNIVFPSV--------IDAIALDP--AEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAY  277 (424)
Q Consensus       208 ~~~~~~~~~~~~~--------i~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  277 (424)
                      +++.+.......+        ...+.-+|  .+..+++++.+|.++.+|..+++.         +-... .. .......
T Consensus       209 tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~---------~W~~~-~~-~~~~p~~  277 (377)
T TIGR03300       209 TGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRV---------LWKRD-AS-SYQGPAV  277 (377)
T ss_pred             CCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcE---------EEeec-cC-CccCceE
Confidence            9987665432110        00111122  356788888999999999988742         11111 11 1111111


Q ss_pred             cCCCEEEEeCCCCcEEEEeCCCCcEEEEEeccCC-CeeEEEEEecCceeeeccCCCceeeccCCCCCC
Q 014475          278 STGDLLISGSEDGMVRVWDPITHNIVRMFRLAKG-PVNNILVVRRPLYLNLGSFSNPHTSSRRHGSQL  344 (424)
Q Consensus       278 ~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~-~v~~l~~s~~~~~l~~~~~d~~i~iw~~~~~~~  344 (424)
                      . ++.++.++.||.+..+|..+++.+.......+ .......  .+..|++++.+|.+.+++..+++.
T Consensus       278 ~-~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~l~~~d~~tG~~  342 (377)
T TIGR03300       278 D-DNRLYVTDADGVVVALDRRSGSELWKNDELKYRQLTAPAV--VGGYLVVGDFEGYLHWLSREDGSF  342 (377)
T ss_pred             e-CCEEEEECCCCeEEEEECCCCcEEEccccccCCccccCEE--ECCEEEEEeCCCEEEEEECCCCCE
Confidence            1 67888888999999999999988866532222 2222222  466888999999999999887754

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.30  E-value=1.6e-11  Score=108.32  Aligned_cols=239  Identities=15%  Similarity=0.123  Sum_probs=159.9

Q ss_pred             ecCCCCeeEEEECCCCCEEEEecCCCcEEEEEccCc-------ceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEE
Q 014475           77 SLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASG-------RLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIW  149 (424)
Q Consensus        77 ~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~-------~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iw  149 (424)
                      ..|.+.|..++--.+.+-+++++.|.+|++|.++..       .+..+++.|..+|.++.|..+.++++++  ||-|.+|
T Consensus       732 ~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~giHlW  809 (1034)
T KOG4190|consen  732 TGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DGGIHLW  809 (1034)
T ss_pred             cCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cCcceee
Confidence            357778888877777888999999999999998642       4667889999999999999888877765  8899999


Q ss_pred             eCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEE-eCCCcEEEEecCCCceeeeee------cCccee
Q 014475          150 SLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSA-SEDRTCKVWSLLKGRLLRNIV------FPSVID  222 (424)
Q Consensus       150 d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~-~~d~~v~iwd~~~~~~~~~~~------~~~~i~  222 (424)
                      |.--+....+..         .....+.+..+..-++-....++.+ +...+|+++|.+..+-...+.      ....+.
T Consensus       810 DPFigr~Laq~~---------dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R  880 (1034)
T KOG4190|consen  810 DPFIGRLLAQME---------DAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTR  880 (1034)
T ss_pred             cccccchhHhhh---------cCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchhee
Confidence            984432211111         1112233333333333221344444 778899999999887666654      235688


Q ss_pred             EEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecCCCEEEEeCCCCcEEE-EeCCCCc
Q 014475          223 AIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTGDLLISGSEDGMVRV-WDPITHN  301 (424)
Q Consensus       223 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~t~~~dg~i~i-wd~~~~~  301 (424)
                      +++..|.|++++++-.+|.|.+.|.+++.         .+..++..+.....++-..+..++....|.++.+ |..-++.
T Consensus       881 ~iaVa~~GN~lAa~LSnGci~~LDaR~G~---------vINswrpmecdllqlaapsdq~L~~saldHslaVnWhaldgi  951 (1034)
T KOG4190|consen  881 AIAVADKGNKLAAALSNGCIAILDARNGK---------VINSWRPMECDLLQLAAPSDQALAQSALDHSLAVNWHALDGI  951 (1034)
T ss_pred             EEEeccCcchhhHHhcCCcEEEEecCCCc---------eeccCCcccchhhhhcCchhHHHHhhcccceeEeeehhcCCe
Confidence            99999999999999999999999999984         3444433333333443322677777778888888 8877776


Q ss_pred             EEEEEeccCCCeeEEEEEecCceeeeccCCCceeec
Q 014475          302 IVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSS  337 (424)
Q Consensus       302 ~~~~~~~~~~~v~~l~~s~~~~~l~~~~~d~~i~iw  337 (424)
                      ...+.+....+..-  .-.-|..|+++.....+.+|
T Consensus       952 mh~q~kpppepahf--lqsvgpSLV~a~~Gn~lgVY  985 (1034)
T KOG4190|consen  952 MHLQDKPPPEPAHF--LQSVGPSLVTAQNGNILGVY  985 (1034)
T ss_pred             eeeccCCCCcchhh--hhccCceeEEeccCcEEEEE
Confidence            66655543332211  11123445555444445554

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.28  E-value=8.4e-09  Score=104.54  Aligned_cols=255  Identities=9%  Similarity=0.015  Sum_probs=155.0

Q ss_pred             eecCCCccccCCCCceeEEEEECCCCceeeeec--------------CCCCeeEEEECCCCCEEEEec-CCCcEEEEEcc
Q 014475           46 FLASSQLREQPSASSGSILYWSWSKPQVEVKSL--------------PAEPIKPIAANSHGTYIAGGG-QSGDIYMWEVA  110 (424)
Q Consensus        46 ~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~~~--------------~~~~v~~~~~s~~~~~l~~~~-~dg~v~iwd~~  110 (424)
                      +++.+..+.++...++.|+++|...........              .-.....++++++++.|+++. ..+.|+++|+.
T Consensus       575 vd~~~g~lyVaDs~n~rI~v~d~~G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir~id~~  654 (1057)
T PLN02919        575 IDLLNNRLFISDSNHNRIVVTDLDGNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALREIDFV  654 (1057)
T ss_pred             EECCCCeEEEEECCCCeEEEEeCCCCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEEEEecC
Confidence            666544444444444899999987543322211              012358899999888665554 45679999987


Q ss_pred             Ccceeeeeccc-----------------cCCeEEEEEcc-CCcEEEEeeCCCcEEEEeCCcccchhcccccccceE---E
Q 014475          111 SGRLLKKWHAH-----------------YRAVTCLVFSE-DGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYL---H  169 (424)
Q Consensus       111 ~~~~~~~~~~~-----------------~~~i~~~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~---~  169 (424)
                      ++.. .++.+.                 -.....++++| ++..+++.+.++.|++||..++....-.........   .
T Consensus       655 ~~~V-~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~  733 (1057)
T PLN02919        655 NETV-RTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYERNLNGSS  733 (1057)
T ss_pred             CCEE-EEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCccccCCCCc
Confidence            6543 222110                 12346899999 566677777888999999866422100000000000   0


Q ss_pred             eecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeee----------------------cCcceeEEEEC
Q 014475          170 SFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV----------------------FPSVIDAIALD  227 (424)
Q Consensus       170 ~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~----------------------~~~~i~~~~~~  227 (424)
                      .....-.....+++++++. ..+++-+.++.|++||+.++.......                      .-.....++++
T Consensus       734 ~~~~~~~~P~GIavspdG~-~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd  812 (1057)
T PLN02919        734 GTSTSFAQPSGISLSPDLK-ELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCA  812 (1057)
T ss_pred             cccccccCccEEEEeCCCC-EEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEe
Confidence            0001113456789999873 356666778999999998765321110                      00124688999


Q ss_pred             CCCCEEEEEeCCCcEEEEEcCCCCCCCCCcC----ceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCCCcE
Q 014475          228 PAEHVFYAGSRDGSIYIAALNAESPSTSSYG----MHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNI  302 (424)
Q Consensus       228 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~----~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~  302 (424)
                      ++|..+++-..+++|++||..++........    ..--....+.-.....+++++ ++++++-+.++.|++||+.+++.
T Consensus       813 ~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~~  892 (1057)
T PLN02919        813 KDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGEA  892 (1057)
T ss_pred             CCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCcc
Confidence            9999888888999999999987531100000    000000112223577899999 88888888999999999998865

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=99.26  E-value=7.3e-09  Score=90.13  Aligned_cols=214  Identities=15%  Similarity=0.140  Sum_probs=152.6

Q ss_pred             EECCCCCEEEEecCCCcEEEEEccCcceeeee---cc-----ccCCeE---EEE-Ecc-CCcEEEEeeCCCcEEEEeCCc
Q 014475           87 AANSHGTYIAGGGQSGDIYMWEVASGRLLKKW---HA-----HYRAVT---CLV-FSE-DGSFLISGSEDGCVRIWSLLT  153 (424)
Q Consensus        87 ~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~---~~-----~~~~i~---~~~-~~~-~~~~l~s~~~dg~i~iwd~~~  153 (424)
                      ..+.||+.++- ...|.|++||.++.+....-   ..     ....+.   -+. |++ +|.+++..|. |...+.+...
T Consensus       273 ~~nsDGkrIvF-q~~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSR-GkaFi~~~~~  350 (668)
T COG4946         273 NANSDGKRIVF-QNAGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSR-GKAFIMRPWD  350 (668)
T ss_pred             ccCCCCcEEEE-ecCCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEec-CcEEEECCCC
Confidence            34668888776 45688999999876432211   00     011111   111 333 6888888875 6777777643


Q ss_pred             ccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCC-cEEEEecCCCceeeeeecCcceeEEEECCCCCE
Q 014475          154 VFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDR-TCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHV  232 (424)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~-~v~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~  232 (424)
                      +.             ...-+|...|.-..+..++  +-++.|..|| .+-++|.++++..+....-+.|.++..+|+|++
T Consensus       351 ~~-------------~iqv~~~~~VrY~r~~~~~--e~~vigt~dgD~l~iyd~~~~e~kr~e~~lg~I~av~vs~dGK~  415 (668)
T COG4946         351 GY-------------SIQVGKKGGVRYRRIQVDP--EGDVIGTNDGDKLGIYDKDGGEVKRIEKDLGNIEAVKVSPDGKK  415 (668)
T ss_pred             Ce-------------eEEcCCCCceEEEEEccCC--cceEEeccCCceEEEEecCCceEEEeeCCccceEEEEEcCCCcE
Confidence            21             1123566778888887777  6788889888 899999999887777667789999999999999


Q ss_pred             EEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCCC----cEEEEeCCCCcEEEEEe
Q 014475          233 FYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDG----MVRVWDPITHNIVRMFR  307 (424)
Q Consensus       233 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg----~i~iwd~~~~~~~~~~~  307 (424)
                      ++++.....|.+.|+.++.         ....-+...+-|+...|+| ++++|-+--+|    .|+++|+..++....-.
T Consensus       416 ~vvaNdr~el~vididngn---------v~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT  486 (668)
T COG4946         416 VVVANDRFELWVIDIDNGN---------VRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTT  486 (668)
T ss_pred             EEEEcCceEEEEEEecCCC---------eeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecC
Confidence            9999999999999999985         2223344567899999999 99999887665    58999999877655433


Q ss_pred             ccCCCeeEEEEEecCceeee
Q 014475          308 LAKGPVNNILVVRRPLYLNL  327 (424)
Q Consensus       308 ~~~~~v~~l~~s~~~~~l~~  327 (424)
                       ..+-=.+-+|.||+++|--
T Consensus       487 -~ta~DfsPaFD~d~ryLYf  505 (668)
T COG4946         487 -PTAYDFSPAFDPDGRYLYF  505 (668)
T ss_pred             -CcccccCcccCCCCcEEEE
Confidence             3333355688899987743

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=99.26  E-value=1.3e-10  Score=98.68  Aligned_cols=167  Identities=18%  Similarity=0.197  Sum_probs=116.6

Q ss_pred             eEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCce-eEEEEEeCCCcEEE
Q 014475          125 VTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVS-ATIVSASEDRTCKV  203 (424)
Q Consensus       125 i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~l~~~~~d~~v~i  203 (424)
                      ...+..++.+++++++..+....+++.....+       ..++..... -...-+++.+..+... ......+....+.+
T Consensus        65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~-------~~kl~~~~~-v~~~~~ai~~~~~~~sv~v~dkagD~~~~di  136 (390)
T KOG3914|consen   65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPK-------GAKLLDVSC-VPKRPTAISFIREDTSVLVADKAGDVYSFDI  136 (390)
T ss_pred             ccccccCCCceEEEEEeCCCceEEEEEecCCC-------cceeeeEee-cccCcceeeeeeccceEEEEeecCCceeeee
Confidence            34456677888888888888877887755221       111222221 1222233444433310 22223344455666


Q ss_pred             EecCCCceeeeeecCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecCCCEE
Q 014475          204 WSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTGDLL  283 (424)
Q Consensus       204 wd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l  283 (424)
                      |....+.+...+.|-..+..++++||+++++++..|..|++-......        ..-.-.-||..-|..++.-++..|
T Consensus       137 ~s~~~~~~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f--------~IesfclGH~eFVS~isl~~~~~L  208 (390)
T KOG3914|consen  137 LSADSGRCEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATF--------VIESFCLGHKEFVSTISLTDNYLL  208 (390)
T ss_pred             ecccccCcchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCccc--------chhhhccccHhheeeeeeccCcee
Confidence            666667777777789999999999999999999999999998887652        222234579999999999988889


Q ss_pred             EEeCCCCcEEEEeCCCCcEEEEEe
Q 014475          284 ISGSEDGMVRVWDPITHNIVRMFR  307 (424)
Q Consensus       284 ~t~~~dg~i~iwd~~~~~~~~~~~  307 (424)
                      ++||.|++|++||+.+|+++.++.
T Consensus       209 lS~sGD~tlr~Wd~~sgk~L~t~d  232 (390)
T KOG3914|consen  209 LSGSGDKTLRLWDITSGKLLDTCD  232 (390)
T ss_pred             eecCCCCcEEEEecccCCcccccc
Confidence            999999999999999999887765

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.25  E-value=7.3e-09  Score=104.97  Aligned_cols=240  Identities=15%  Similarity=0.085  Sum_probs=151.5

Q ss_pred             EeecCCCCCceEEEeCCCCceEEEeeCCC--C---------CCCceEEecceeecCCCccccCCCCceeEEEEECCCCce
Q 014475            5 IASSSVADTGIGCWDLESGAEQLRYKSCA--S---------PPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQV   73 (424)
Q Consensus         5 lat~~~~dg~i~vwd~~~~~~~~~~~~~~--~---------~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~   73 (424)
                      .++-. .++.|++||.. |..+..+....  +         .-..-..++  +.++++.+.++....+.|+++|..++..
T Consensus       583 yVaDs-~n~rI~v~d~~-G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIa--vd~~gn~LYVaDt~n~~Ir~id~~~~~V  658 (1057)
T PLN02919        583 FISDS-NHNRIVVTDLD-GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLA--YNAKKNLLYVADTENHALREIDFVNETV  658 (1057)
T ss_pred             EEEEC-CCCeEEEEeCC-CCEEEEEccCCCcCCCCCchhccccCCCcEEE--EeCCCCEEEEEeCCCceEEEEecCCCEE
Confidence            34444 67889999975 55554443211  0         011234455  8888887666655448899999877655


Q ss_pred             eeeecC-----------------CCCeeEEEECC-CCCEEEEecCCCcEEEEEccCcceeeeecc---------------
Q 014475           74 EVKSLP-----------------AEPIKPIAANS-HGTYIAGGGQSGDIYMWEVASGRLLKKWHA---------------  120 (424)
Q Consensus        74 ~~~~~~-----------------~~~v~~~~~s~-~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~---------------  120 (424)
                      ......                 -.....++|+| ++.++++...++.|++||..++.... +.+               
T Consensus       659 ~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~-~~G~G~~~~~~g~~~~~~  737 (1057)
T PLN02919        659 RTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRV-FSGDGYERNLNGSSGTST  737 (1057)
T ss_pred             EEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEE-EecCCccccCCCCccccc
Confidence            332110                 12346899999 56666777778899999987764321 111               


Q ss_pred             ccCCeEEEEEccCCcE-EEEeeCCCcEEEEeCCcccchhccccc--ccceEEeecC--------CcCceeEEEEEEcCce
Q 014475          121 HYRAVTCLVFSEDGSF-LISGSEDGCVRIWSLLTVFEECESQRA--SHLYLHSFTG--------HTLRITDIVIGYGGVS  189 (424)
Q Consensus       121 ~~~~i~~~~~~~~~~~-l~s~~~dg~i~iwd~~~~~~~~~~~~~--~~~~~~~~~~--------~~~~i~~~~~~~~~~~  189 (424)
                      .......++++|+++. +++-+.++.|++||+.++.........  .......+..        .-.....+++++++  
T Consensus       738 ~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG--  815 (1057)
T PLN02919        738 SFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDG--  815 (1057)
T ss_pred             cccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCC--
Confidence            1134567999999884 555566789999999764211000000  0000000000        11123578888887  


Q ss_pred             eEEEEEeCCCcEEEEecCCCceeeeeec--------------CcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCC
Q 014475          190 ATIVSASEDRTCKVWSLLKGRLLRNIVF--------------PSVIDAIALDPAEHVFYAGSRDGSIYIAALNAES  251 (424)
Q Consensus       190 ~~l~~~~~d~~v~iwd~~~~~~~~~~~~--------------~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  251 (424)
                      ..+++-+.++.|++||..++........              -.....++++++|+.+++-+.++.|++||+++..
T Consensus       816 ~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~  891 (1057)
T PLN02919        816 QIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGE  891 (1057)
T ss_pred             cEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCc
Confidence            7888888899999999987765433221              1246789999999988888899999999998864

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=99.23  E-value=5.6e-09  Score=84.19  Aligned_cols=245  Identities=13%  Similarity=0.021  Sum_probs=158.4

Q ss_pred             eeEEEEECCCCceeeeecCCCCeeEEEECC-----CCCEEEEecCCCcEEEEEccCcceeee-eccccCCeEEEEEcc-C
Q 014475           61 GSILYWSWSKPQVEVKSLPAEPIKPIAANS-----HGTYIAGGGQSGDIYMWEVASGRLLKK-WHAHYRAVTCLVFSE-D  133 (424)
Q Consensus        61 g~i~vwd~~~~~~~~~~~~~~~v~~~~~s~-----~~~~l~~~~~dg~v~iwd~~~~~~~~~-~~~~~~~i~~~~~~~-~  133 (424)
                      ..+-+|+..+........-    ..+.|-|     .-.+||.|+..|...+|.+.+.+.... ...|...|+-+.=.. .
T Consensus        52 ~sv~i~~~y~N~~~iv~~y----~g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~  127 (344)
T KOG4532|consen   52 ISVPINSHYSNPKGIVEFY----TGMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDL  127 (344)
T ss_pred             eeeEeccccCCchhhEEee----ecccccchHhhccccEEEeccccceeeeecccCcccceeeecccccchhhhhhhccc
Confidence            5677787654431111111    3344444     345899999999999999986654333 233443332221111 1


Q ss_pred             CcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcC--ceeEEEEEEcCceeEEEEEeCCCcEEEEecCCC-c
Q 014475          134 GSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTL--RITDIVIGYGGVSATIVSASEDRTCKVWSLLKG-R  210 (424)
Q Consensus       134 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~-~  210 (424)
                      .-.+..++.|.++++.+++-..         ..    ...|..  .+.++++++++  .++++.+....|..|.+... +
T Consensus       128 ~~~~~i~sndht~k~~~~~~~s---------~~----~~~h~~~~~~ns~~~snd~--~~~~~Vgds~~Vf~y~id~~se  192 (344)
T KOG4532|consen  128 KFPLNIASNDHTGKTMVVSGDS---------NK----FAVHNQNLTQNSLHYSNDP--SWGSSVGDSRRVFRYAIDDESE  192 (344)
T ss_pred             ccceeeccCCcceeEEEEecCc---------cc----ceeeccccceeeeEEcCCC--ceEEEecCCCcceEEEeCCccc
Confidence            2236677888899999885421         11    112222  37788899888  89999999999999988743 2


Q ss_pred             eeeeee---cCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC---CCEEE
Q 014475          211 LLRNIV---FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST---GDLLI  284 (424)
Q Consensus       211 ~~~~~~---~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~~l~  284 (424)
                      -+..+.   ..+.-.+..|+.....+|+++.||.+.|||++.......    ....+-..|.+.+..+.|++   -++|.
T Consensus       193 y~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~----~~sstrp~hnGa~R~c~Fsl~g~lDLLf  268 (344)
T KOG4532|consen  193 YIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMA----EISSTRPHHNGAFRVCRFSLYGLLDLLF  268 (344)
T ss_pred             eeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchh----hhcccCCCCCCceEEEEecCCCcceEEE
Confidence            222222   445667889999999999999999999999998653221    12223345899999999997   34566


Q ss_pred             EeCCCCcEEEEeCCCCcEEEEEeccCC--------CeeEEEEEecCceeeec
Q 014475          285 SGSEDGMVRVWDPITHNIVRMFRLAKG--------PVNNILVVRRPLYLNLG  328 (424)
Q Consensus       285 t~~~dg~i~iwd~~~~~~~~~~~~~~~--------~v~~l~~s~~~~~l~~~  328 (424)
                      ..-.-+.+.+-|+++++..+.+.....        .|..-.|+.++..+.+.
T Consensus       269 ~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~  320 (344)
T KOG4532|consen  269 ISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNENESNDVK  320 (344)
T ss_pred             EecCcceEEEEEcccCceeeEEecCccccccccccccccccccCCCcccccc
Confidence            665667899999999987766553322        25555565555544443

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=99.22  E-value=6.5e-08  Score=82.68  Aligned_cols=223  Identities=18%  Similarity=0.172  Sum_probs=146.9

Q ss_pred             EEEECC-CCCEEEEecCCCcEEEEEccCcceeeeeccccCCeEEEEEc-cCCcEEEEeeCCCcEEEEeCCcccchhcccc
Q 014475           85 PIAANS-HGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFS-EDGSFLISGSEDGCVRIWSLLTVFEECESQR  162 (424)
Q Consensus        85 ~~~~s~-~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~-~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~  162 (424)
                      ++.|.+ ++.++++-...+.|..|+..+++... +...  ....+.+. +++. ++.+... .+.++|+.++        
T Consensus         4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~--~~~G~~~~~~~g~-l~v~~~~-~~~~~d~~~g--------   70 (246)
T PF08450_consen    4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLP--GPNGMAFDRPDGR-LYVADSG-GIAVVDPDTG--------   70 (246)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESS--SEEEEEEECTTSE-EEEEETT-CEEEEETTTT--------
T ss_pred             ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecC--CCceEEEEccCCE-EEEEEcC-ceEEEecCCC--------
Confidence            567887 77777777778999999988775533 2222  26778887 5655 5555554 4566688663        


Q ss_pred             cccceEEee--cC-CcCceeEEEEEEcCceeEEEEEeCC--------CcEEEEecCCCceeeeeecCcceeEEEECCCCC
Q 014475          163 ASHLYLHSF--TG-HTLRITDIVIGYGGVSATIVSASED--------RTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEH  231 (424)
Q Consensus       163 ~~~~~~~~~--~~-~~~~i~~~~~~~~~~~~~l~~~~~d--------~~v~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~  231 (424)
                       +...+...  .. .....+++++.+++  ++.++....        |.|..++.. ++.......-...+.++|+|+++
T Consensus        71 -~~~~~~~~~~~~~~~~~~ND~~vd~~G--~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~~~pNGi~~s~dg~  146 (246)
T PF08450_consen   71 -KVTVLADLPDGGVPFNRPNDVAVDPDG--NLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGLGFPNGIAFSPDGK  146 (246)
T ss_dssp             -EEEEEEEEETTCSCTEEEEEEEE-TTS---EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEESSEEEEEEETTSS
T ss_pred             -cEEEEeeccCCCcccCCCceEEEcCCC--CEEEEecCCCccccccccceEEECCC-CeEEEEecCcccccceEECCcch
Confidence             22222222  22 45678899999988  666665543        557778876 55555555556678999999998


Q ss_pred             EEEE-EeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCCCcEEEEEecc
Q 014475          232 VFYA-GSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLA  309 (424)
Q Consensus       232 ~l~~-~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~  309 (424)
                      .|++ -+..+.|..+++........  ..+....+....+..-.+++.. |++.++.-..+.|.++|.+ |+.+..+...
T Consensus       147 ~lyv~ds~~~~i~~~~~~~~~~~~~--~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p  223 (246)
T PF08450_consen  147 TLYVADSFNGRIWRFDLDADGGELS--NRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELP  223 (246)
T ss_dssp             EEEEEETTTTEEEEEEEETTTCCEE--EEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-S
T ss_pred             heeecccccceeEEEecccccccee--eeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCC
Confidence            7764 56778899999975432100  0112222333333478899988 8888887788999999977 9999998877


Q ss_pred             CCCeeEEEEE-ecCceeee
Q 014475          310 KGPVNNILVV-RRPLYLNL  327 (424)
Q Consensus       310 ~~~v~~l~~s-~~~~~l~~  327 (424)
                      ...+++++|. ++...|..
T Consensus       224 ~~~~t~~~fgg~~~~~L~v  242 (246)
T PF08450_consen  224 VPRPTNCAFGGPDGKTLYV  242 (246)
T ss_dssp             SSSEEEEEEESTTSSEEEE
T ss_pred             CCCEEEEEEECCCCCEEEE
Confidence            6789999995 56555543

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=99.22  E-value=3.3e-09  Score=97.58  Aligned_cols=247  Identities=15%  Similarity=0.133  Sum_probs=178.3

Q ss_pred             CCCCeeEEEECCCCCEEEEecCCCcEEEEEccCcceeeeeccccCCeEEEEEccCC------------cEEEEeeCCCcE
Q 014475           79 PAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDG------------SFLISGSEDGCV  146 (424)
Q Consensus        79 ~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~------------~~l~s~~~dg~i  146 (424)
                      +...-.++.|+|.| ++|.|+. ..|.+.|..+.+.++.+..|...|+.+.|.|..            -.|+++...|.|
T Consensus        14 ~~sN~~A~Dw~~~G-LiAygsh-slV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrI   91 (1062)
T KOG1912|consen   14 SRSNRNAADWSPSG-LIAYGSH-SLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRI   91 (1062)
T ss_pred             CcccccccccCccc-eEEEecC-ceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcE
Confidence            34456788999877 5777765 479999999999999999999999999998621            246777788999


Q ss_pred             EEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCce--eEEEEEeCCCcEEEEecCCCceeeeee-cCcceeE
Q 014475          147 RIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVS--ATIVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDA  223 (424)
Q Consensus       147 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~--~~l~~~~~d~~v~iwd~~~~~~~~~~~-~~~~i~~  223 (424)
                      .+||...           ...+..+..|..++.+++|-+..+.  ..|++-....++.+|+..+|+...... ......|
T Consensus        92 il~d~~~-----------~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~  160 (1062)
T KOG1912|consen   92 ILVDFVL-----------ASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSC  160 (1062)
T ss_pred             EEEEehh-----------hhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceee
Confidence            9999955           2234456778899999999875432  567777888899999999999988877 4455667


Q ss_pred             EEECC-CCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCc----------------C---------eEEEEe
Q 014475          224 IALDP-AEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSK----------------A---------VTCLAY  277 (424)
Q Consensus       224 ~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~----------------~---------i~~~~~  277 (424)
                      +.+.| +.+.+..-+..|.+.+-+.-.......+  .+..+.-..|..                .         ...++|
T Consensus       161 f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~p--gk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf  238 (1062)
T KOG1912|consen  161 FRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVP--GKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAF  238 (1062)
T ss_pred             eeeCCCCcceEEEEccCceEEEEeccCCCCCCCC--ceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhc
Confidence            99999 6777877777887777665433221111  111111112211                0         122566


Q ss_pred             cC--CCEEEEeCCCCcEEEEeCCCCcEEEEEeccCCCeeEEEEEecC--ceeeeccCCCceeeccCCC
Q 014475          278 ST--GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRP--LYLNLGSFSNPHTSSRRHG  341 (424)
Q Consensus       278 ~~--~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~--~~l~~~~~d~~i~iw~~~~  341 (424)
                      +|  .+.++. .....+.++|++-..++.......+.+.-+.+-|++  ..|.+.-.||.+.+|..+.
T Consensus       239 ~p~~rn~lfi-~~prellv~dle~~~~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~  305 (1062)
T KOG1912|consen  239 SPHWRNILFI-TFPRELLVFDLEYECCLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKE  305 (1062)
T ss_pred             ChhhhceEEE-EeccceEEEcchhhceeEEEEeccCCcceeEeccCCCcceEEEEecCCeEEEEEeec
Confidence            78  333333 346679999999999999888777777778887766  4788999999999998764

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=99.21  E-value=4.7e-10  Score=89.86  Aligned_cols=193  Identities=16%  Similarity=0.189  Sum_probs=122.1

Q ss_pred             CeEEEeecCCCCCceEEEeCCCCceEEEeeCCCCCCCceEEecc--------eeecCCCccccCCCCceeEEEEECCCCc
Q 014475            1 MELLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQ--------RFLASSQLREQPSASSGSILYWSWSKPQ   72 (424)
Q Consensus         1 ~e~~lat~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--------~~~~~~~~l~~~~~~~g~i~vwd~~~~~   72 (424)
                      ||..|+++. .++.+......++.+....+. ....+...+.+.        ..+..+..+++++.| |.+.+.+.+...
T Consensus        46 ~~~~lf~~e-~~~~~ss~g~~r~~~~~~~~r-t~~i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~d-g~~~v~s~~~~~  122 (319)
T KOG4714|consen   46 AEYILFTGE-TSSQIISLGKGRGRCISLWER-DDGIDPFKVLAKNSEIDPNDACTMTDNRVCIGYAD-GSLAVFSTDKDL  122 (319)
T ss_pred             hhheeeccc-chhheeeeccceEEEechhhc-ccCcCceeeeeccCCCCCcccccccCCceEecCCC-ceEEEEechHHH
Confidence            567888888 888888777665554432211 112222222220        033456678888887 999999987622


Q ss_pred             eeeee---cCCCCeeEEEECCCCCEEEEecC-----CCcEEEEEccCcceeeeeccccCCeEEEEEccC-CcEEEEeeCC
Q 014475           73 VEVKS---LPAEPIKPIAANSHGTYIAGGGQ-----SGDIYMWEVASGRLLKKWHAHYRAVTCLVFSED-GSFLISGSED  143 (424)
Q Consensus        73 ~~~~~---~~~~~v~~~~~s~~~~~l~~~~~-----dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~s~~~d  143 (424)
                      .....   .|.+ -.+.++...++.+.++..     -+..+.|+++..+....-......|.+++-+|. .+.+++|+.|
T Consensus       123 ~~~~~i~~~~~~-~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~d  201 (319)
T KOG4714|consen  123 ALMSRIPSIHSG-SASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVCCGTDD  201 (319)
T ss_pred             hhhhhccccccc-ccccceeecccEEecCCcceEeeccceeeecccccccccccccccccchhhhCCcccccEEEEecCC
Confidence            11111   1111 112223334555554422     234667776544433322233445999999994 4567788899


Q ss_pred             CcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCC
Q 014475          144 GCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLK  208 (424)
Q Consensus       144 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~  208 (424)
                      |.+-+||.+..          ..+...+..|+.+|+.+.|+|... ..|+++++||.+..||..+
T Consensus       202 g~~~l~d~rn~----------~~p~S~l~ahk~~i~eV~FHpk~p-~~Lft~sedGslw~wdas~  255 (319)
T KOG4714|consen  202 GIVGLWDARNV----------AMPVSLLKAHKAEIWEVHFHPKNP-EHLFTCSEDGSLWHWDAST  255 (319)
T ss_pred             CeEEEEEcccc----------cchHHHHHHhhhhhhheeccCCCc-hheeEecCCCcEEEEcCCC
Confidence            99999999762          334566788999999999999876 8899999999999999765

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=99.21  E-value=5e-10  Score=89.69  Aligned_cols=196  Identities=16%  Similarity=0.184  Sum_probs=119.7

Q ss_pred             eeEEEECCCCCEEEEecCCCcEEEEEccCccee------------eeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEe
Q 014475           83 IKPIAANSHGTYIAGGGQSGDIYMWEVASGRLL------------KKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWS  150 (424)
Q Consensus        83 v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~------------~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd  150 (424)
                      ++.+.++.+ -.|+++..++.+......++.+.            ..+..|.++-.+-..+--++.++++..||.+.+++
T Consensus        39 ~~~~~~v~~-~~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s  117 (319)
T KOG4714|consen   39 LSKVSLSAE-YILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFS  117 (319)
T ss_pred             EEEeechhh-heeecccchhheeeeccceEEEechhhcccCcCceeeeeccCCCCCcccccccCCceEecCCCceEEEEe
Confidence            555556543 34666666666655554433222            22223333222222233456799999999999999


Q ss_pred             CCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEe-----CCCcEEEEecCCCceeee-eecCcceeEE
Q 014475          151 LLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSAS-----EDRTCKVWSLLKGRLLRN-IVFPSVIDAI  224 (424)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~-----~d~~v~iwd~~~~~~~~~-~~~~~~i~~~  224 (424)
                      .+.....          ..........-.+.+....+  +.+.++.     .-+..+.|+++..+.+.. ......+.++
T Consensus       118 ~~~~~~~----------~~~i~~~~~~~as~~~~~~~--~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~~~v~~l  185 (319)
T KOG4714|consen  118 TDKDLAL----------MSRIPSIHSGSASRKICRHG--NSILSGGCGNWNAQDNFYANTLDPIKTLIPSKKALDAVTAL  185 (319)
T ss_pred             chHHHhh----------hhhcccccccccccceeecc--cEEecCCcceEeeccceeeecccccccccccccccccchhh
Confidence            8652110          01111111111122222332  3333322     123456666654332222 1233459999


Q ss_pred             EECC-CCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC--CCEEEEeCCCCcEEEEeCCC
Q 014475          225 ALDP-AEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST--GDLLISGSEDGMVRVWDPIT  299 (424)
Q Consensus       225 ~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~l~t~~~dg~i~iwd~~~  299 (424)
                      +-+| ....+++|+.||.+-+||.++..        .+...+..|+.+|..+-|+|  +..|+++++||.+..||..+
T Consensus       186 ~~hp~qq~~v~cgt~dg~~~l~d~rn~~--------~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~  255 (319)
T KOG4714|consen  186 CSHPAQQHLVCCGTDDGIVGLWDARNVA--------MPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST  255 (319)
T ss_pred             hCCcccccEEEEecCCCeEEEEEccccc--------chHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence            9999 45677889999999999999974        56778889999999999999  88999999999999999763

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=99.20  E-value=5.3e-08  Score=79.81  Aligned_cols=235  Identities=13%  Similarity=0.075  Sum_probs=136.9

Q ss_pred             EEEECCCCCEEEEecCCCcEEEEEccCc--ceeeee---ccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhc
Q 014475           85 PIAANSHGTYIAGGGQSGDIYMWEVASG--RLLKKW---HAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECE  159 (424)
Q Consensus        85 ~~~~s~~~~~l~~~~~dg~v~iwd~~~~--~~~~~~---~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~  159 (424)
                      .++.+++|+.||+. .|..|.|-..+..  ..+...   +.....=..++|+||+..||.+...|+|++||+..... ..
T Consensus         2 ~~~~~~~Gk~lAi~-qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~l-f~   79 (282)
T PF15492_consen    2 HLALSSDGKLLAIL-QDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSEL-FV   79 (282)
T ss_pred             ceeecCCCcEEEEE-eccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEeccccee-EE
Confidence            35677899988875 5677877665443  222222   22223456799999999999999999999999964111 00


Q ss_pred             ccccccceEEeecCCcCceeEEEEEEcCc----eeEEEEEeCCCcEEEEecCC-----Cceeeeee----cCcceeEEEE
Q 014475          160 SQRASHLYLHSFTGHTLRITDIVIGYGGV----SATIVSASEDRTCKVWSLLK-----GRLLRNIV----FPSVIDAIAL  226 (424)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~----~~~l~~~~~d~~v~iwd~~~-----~~~~~~~~----~~~~i~~~~~  226 (424)
                      .....    .....-...|..+.|.+...    ...|++-..+|.++-|-+..     .+....+.    .+..|.++.+
T Consensus        80 I~p~~----~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy  155 (282)
T PF15492_consen   80 IPPAM----SFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVY  155 (282)
T ss_pred             cCccc----ccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEE
Confidence            00000    00112245666666654320    14577777788888776532     22333333    4678999999


Q ss_pred             CCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEe---cCCCEEEEeCCCCc------EEEEeC
Q 014475          227 DPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAY---STGDLLISGSEDGM------VRVWDP  297 (424)
Q Consensus       227 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~---~~~~~l~t~~~dg~------i~iwd~  297 (424)
                      +|..++|++|+....      +.+.             ..+....+++=..   .|--..++...|+.      ..+|.+
T Consensus       156 ~p~h~LLlVgG~~~~------~~~~-------------s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~  216 (282)
T PF15492_consen  156 HPKHRLLLVGGCEQN------QDGM-------------SKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRI  216 (282)
T ss_pred             cCCCCEEEEeccCCC------CCcc-------------ccccccCceEEEEcCCCCcEEEccccCccccccccccceeec
Confidence            999999888875432      1100             0011122222111   11111122222221      234443


Q ss_pred             CCCcEEEEEeccCCCeeEEEEEecCceeeeccCCCceeeccCCCCCC
Q 014475          298 ITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGSQL  344 (424)
Q Consensus       298 ~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~d~~i~iw~~~~~~~  344 (424)
                      -+.+...........|..+..||||+.||+...+|.|.+|+++.-.+
T Consensus       217 ~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~  263 (282)
T PF15492_consen  217 PSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRL  263 (282)
T ss_pred             cceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchh
Confidence            33322222223456899999999999999999999999999986544

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.19  E-value=4.2e-11  Score=105.65  Aligned_cols=215  Identities=15%  Similarity=0.219  Sum_probs=154.4

Q ss_pred             eeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEE
Q 014475          115 LKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVS  194 (424)
Q Consensus       115 ~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~  194 (424)
                      +..+.+|...|..+.--.+.+-+++++.|++|++|.++....    ......+..+++.|+.+|.++.|-.+.  +.++ 
T Consensus       728 L~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD----~~~tsaCQfTY~aHkk~i~~igfL~~l--r~i~-  800 (1034)
T KOG4190|consen  728 LCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGD----EIGTSACQFTYQAHKKPIHDIGFLADL--RSIA-  800 (1034)
T ss_pred             eecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccC----ccccceeeeEhhhccCcccceeeeecc--ceee-
Confidence            456778999999988877888899999999999999965322    112334667888999999999998875  4554 


Q ss_pred             EeCCCcEEEEecCCCceeeeee---cCcceeEEEECC--CCCEEEEE-eCCCcEEEEEcCCCCCCCCCcCceeeeeeccc
Q 014475          195 ASEDRTCKVWSLLKGRLLRNIV---FPSVIDAIALDP--AEHVFYAG-SRDGSIYIAALNAESPSTSSYGMHIIGSLSDH  268 (424)
Q Consensus       195 ~~~d~~v~iwd~~~~~~~~~~~---~~~~i~~~~~~~--~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~  268 (424)
                       +.||.+.+||.--++++....   ..+.+..+..-|  +...+++| +...+++++|.+...-...    -.+....+.
T Consensus       801 -ScD~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E----~kVcna~~P  875 (1034)
T KOG4190|consen  801 -SCDGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCE----LKVCNAPGP  875 (1034)
T ss_pred             -eccCcceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceee----EEeccCCCC
Confidence             457899999998887776443   223333333333  44455555 6788999999988642111    112222345


Q ss_pred             CcCeEEEEecC-CCEEEEeCCCCcEEEEeCCCCcEEEEEeccCCCeeEEEEEecCceeeeccCCCceee-ccCCCC
Q 014475          269 SKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTS-SRRHGS  342 (424)
Q Consensus       269 ~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~d~~i~i-w~~~~~  342 (424)
                      ...+.+++..+ |+.++.+-.+|.|.+.|.++|+.+..++.-.-....++- |..+.|+....|.++.+ |....+
T Consensus       876 na~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqlaa-psdq~L~~saldHslaVnWhaldg  950 (1034)
T KOG4190|consen  876 NALTRAIAVADKGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLAA-PSDQALAQSALDHSLAVNWHALDG  950 (1034)
T ss_pred             chheeEEEeccCcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhcC-chhHHHHhhcccceeEeeehhcCC
Confidence            57789999999 999999999999999999999998887755444444433 55678888888888887 865543

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.19  E-value=8.7e-10  Score=90.62  Aligned_cols=258  Identities=18%  Similarity=0.295  Sum_probs=169.8

Q ss_pred             CCCCeeEEEECCCCCEEEEecCCCcEEEEEccCcc-----eeeeecccc------------CCeEEEEEccCC--cEEEE
Q 014475           79 PAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGR-----LLKKWHAHY------------RAVTCLVFSEDG--SFLIS  139 (424)
Q Consensus        79 ~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~-----~~~~~~~~~------------~~i~~~~~~~~~--~~l~s  139 (424)
                      ..+.|+++.|...|.|+++|...|.|.+|.-+...     ....+++|.            ..|..+.|..++  ..++.
T Consensus        25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl  104 (460)
T COG5170          25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL  104 (460)
T ss_pred             ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence            45689999999999999999999999999865432     223355553            357888887643  45777


Q ss_pred             eeCCCcEEEEeCCcccchhc------------------------ccc--cccc-----eEEe-ecCCcCceeEEEEEEcC
Q 014475          140 GSEDGCVRIWSLLTVFEECE------------------------SQR--ASHL-----YLHS-FTGHTLRITDIVIGYGG  187 (424)
Q Consensus       140 ~~~dg~i~iwd~~~~~~~~~------------------------~~~--~~~~-----~~~~-~~~~~~~i~~~~~~~~~  187 (424)
                      .+.|.+|++|.+........                        ..+  ....     +.+. ...|.-.|.++.+..+.
T Consensus       105 stNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~  184 (460)
T COG5170         105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDK  184 (460)
T ss_pred             ecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCch
Confidence            78899999999865311000                        000  0000     0111 14577788889888875


Q ss_pred             ceeEEEEEeCCCcEEEEecCCCceeeeee---------cCcceeEEEECCC-CCEEEEEeCCCcEEEEEcCCCCCCCCCc
Q 014475          188 VSATIVSASEDRTCKVWSLLKGRLLRNIV---------FPSVIDAIALDPA-EHVFYAGSRDGSIYIAALNAESPSTSSY  257 (424)
Q Consensus       188 ~~~~l~~~~~d~~v~iwd~~~~~~~~~~~---------~~~~i~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~  257 (424)
                        ..+++ ..|-.|.+|++.-......+.         ....|++..|+|. ...+.-.+..|.|++-|++.........
T Consensus       185 --et~lS-aDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~  261 (460)
T COG5170         185 --ETLLS-ADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSK  261 (460)
T ss_pred             --heeee-ccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCch
Confidence              45554 457789999987433222221         1246888999995 4566777889999999998543211110


Q ss_pred             C-------ceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCCC-cEEEEEeccCC------------Ce---
Q 014475          258 G-------MHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITH-NIVRMFRLAKG------------PV---  313 (424)
Q Consensus       258 ~-------~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~-~~~~~~~~~~~------------~v---  313 (424)
                      .       .--..-+.+-...|..+.|++ |+++++-+. -+|+|||++.. .+++++..|..            .|   
T Consensus       262 klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdk  340 (460)
T COG5170         262 KLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDK  340 (460)
T ss_pred             hhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCceeechHHHHHHHHHhhhhccceeee
Confidence            0       000111223346788899999 888877654 57999999864 57788765532            22   


Q ss_pred             eEEEEEecCceeeeccCCCceeeccCC
Q 014475          314 NNILVVRRPLYLNLGSFSNPHTSSRRH  340 (424)
Q Consensus       314 ~~l~~s~~~~~l~~~~~d~~i~iw~~~  340 (424)
                      ..+.|+-|.+.+++|+.....-++-..
T Consensus       341 FeisfSgd~~~v~sgsy~NNfgiyp~~  367 (460)
T COG5170         341 FEISFSGDDKHVLSGSYSNNFGIYPTD  367 (460)
T ss_pred             EEEEecCCcccccccccccceeeeccc
Confidence            357888899999999998887777643

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=99.13  E-value=6.5e-08  Score=82.38  Aligned_cols=222  Identities=15%  Similarity=0.114  Sum_probs=136.5

Q ss_pred             ceeEEEEECCCCceeeeecCCCCeeEEE--ECCCCCEEEEecCCCcEEEEEccCcceeeeeccccCCeEEEEEccCCcEE
Q 014475           60 SGSILYWSWSKPQVEVKSLPAEPIKPIA--ANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFL  137 (424)
Q Consensus        60 ~g~i~vwd~~~~~~~~~~~~~~~v~~~~--~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l  137 (424)
                      +|.|..||..+++...............  ..+++..+++++.++.|..||..+|+.+..... ...+..... ..+..+
T Consensus         2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~~-~~~~~v   79 (238)
T PF13360_consen    2 DGTLSALDPRTGKELWSYDLGPGIGGPVATAVPDGGRVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAPV-VDGGRV   79 (238)
T ss_dssp             TSEEEEEETTTTEEEEEEECSSSCSSEEETEEEETTEEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGEE-EETTEE
T ss_pred             CCEEEEEECCCCCEEEEEECCCCCCCccceEEEeCCEEEEEcCCCEEEEEECCCCCEEEEeec-cccccceee-eccccc
Confidence            4899999999998887765432233333  333566777778899999999999998877754 222211122 235566


Q ss_pred             EEeeCCCcEEEEeCCcccchhcccccccceEEeecCC-cCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeee
Q 014475          138 ISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGH-TLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV  216 (424)
Q Consensus       138 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~  216 (424)
                      ++++.++.+..+|..++......        ...... ............+  ..++.+..++.|..+|+++|+.+....
T Consensus        80 ~v~~~~~~l~~~d~~tG~~~W~~--------~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~g~l~~~d~~tG~~~w~~~  149 (238)
T PF13360_consen   80 YVGTSDGSLYALDAKTGKVLWSI--------YLTSSPPAGVRSSSSPAVDG--DRLYVGTSSGKLVALDPKTGKLLWKYP  149 (238)
T ss_dssp             EEEETTSEEEEEETTTSCEEEEE--------EE-SSCTCSTB--SEEEEET--TEEEEEETCSEEEEEETTTTEEEEEEE
T ss_pred             ccccceeeeEecccCCcceeeee--------ccccccccccccccCceEec--CEEEEEeccCcEEEEecCCCcEEEEee
Confidence            77778889999998775432110        000000 0111122222234  678888889999999999999988776


Q ss_pred             cCc-c----------eeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecCCCEEEE
Q 014475          217 FPS-V----------IDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTGDLLIS  285 (424)
Q Consensus       217 ~~~-~----------i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~t  285 (424)
                      ... .          +..-....++ .++++..++.+..+|+.++.         .+-...  ...+..+....+..++.
T Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~---------~~w~~~--~~~~~~~~~~~~~~l~~  217 (238)
T PF13360_consen  150 VGEPRGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATGE---------KLWSKP--ISGIYSLPSVDGGTLYV  217 (238)
T ss_dssp             SSTT-SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTTE---------EEEEEC--SS-ECECEECCCTEEEE
T ss_pred             cCCCCCCcceeeecccccceEEECC-EEEEEcCCCeEEEEECCCCC---------EEEEec--CCCccCCceeeCCEEEE
Confidence            322 1          1122222344 77777778864444998874         221111  22233322222777787


Q ss_pred             eCCCCcEEEEeCCCCcEEEE
Q 014475          286 GSEDGMVRVWDPITHNIVRM  305 (424)
Q Consensus       286 ~~~dg~i~iwd~~~~~~~~~  305 (424)
                      ++.++.|..||+++|+.+.+
T Consensus       218 ~~~~~~l~~~d~~tG~~~W~  237 (238)
T PF13360_consen  218 TSSDGRLYALDLKTGKVVWQ  237 (238)
T ss_dssp             EETTTEEEEEETTTTEEEEE
T ss_pred             EeCCCEEEEEECCCCCEEeE
Confidence            77999999999999987653

...

>PRK04043 tolB translocation protein TolB; Provisional

Probab=99.13  E-value=1.1e-07  Score=86.96  Aligned_cols=225  Identities=13%  Similarity=0.035  Sum_probs=133.2

Q ss_pred             eeEEEEECCCCceeeeecCCCCeeEEEECCCCCE-EEEecC---CCcEEEEEccCcceeeeeccccCCeEEEEEccCCcE
Q 014475           61 GSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTY-IAGGGQ---SGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSF  136 (424)
Q Consensus        61 g~i~vwd~~~~~~~~~~~~~~~v~~~~~s~~~~~-l~~~~~---dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~  136 (424)
                      ..|.+-|.+.......... +......|+|||+. ++..+.   +..|+++|+.+++...... ..+......|+|||+.
T Consensus       169 ~~l~~~d~dg~~~~~~~~~-~~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SPDG~~  246 (419)
T PRK04043        169 SNIVLADYTLTYQKVIVKG-GLNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSKDGSK  246 (419)
T ss_pred             ceEEEECCCCCceeEEccC-CCeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEeeEECCCCCE
Confidence            5677777766554433333 37889999999985 554333   3569999998886554433 4455667889999987


Q ss_pred             EEE-eeCC--CcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEe-CCC--cEEEEecCCCc
Q 014475          137 LIS-GSED--GCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSAS-EDR--TCKVWSLLKGR  210 (424)
Q Consensus       137 l~s-~~~d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~-~d~--~v~iwd~~~~~  210 (424)
                      ++. .+.+  ..|.++|+.++.            ...+..+........|+|++  +.|+..+ ..+  .|.+.|+.+++
T Consensus       247 la~~~~~~g~~~Iy~~dl~~g~------------~~~LT~~~~~d~~p~~SPDG--~~I~F~Sdr~g~~~Iy~~dl~~g~  312 (419)
T PRK04043        247 LLLTMAPKGQPDIYLYDTNTKT------------LTQITNYPGIDVNGNFVEDD--KRIVFVSDRLGYPNIFMKKLNSGS  312 (419)
T ss_pred             EEEEEccCCCcEEEEEECCCCc------------EEEcccCCCccCccEECCCC--CEEEEEECCCCCceEEEEECCCCC
Confidence            664 3333  457777875421            12233333323345799998  5554444 334  57778888776


Q ss_pred             eeeeeecCcceeEEEECCCCCEEEEEeCC---------CcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-C
Q 014475          211 LLRNIVFPSVIDAIALDPAEHVFYAGSRD---------GSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-G  280 (424)
Q Consensus       211 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~  280 (424)
                      ..+.......  ...|+|+|+.++.....         ..|.+.|+..+..       +   .+... .......|+| |
T Consensus       313 ~~rlt~~g~~--~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~-------~---~LT~~-~~~~~p~~SPDG  379 (419)
T PRK04043        313 VEQVVFHGKN--NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYI-------R---RLTAN-GVNQFPRFSSDG  379 (419)
T ss_pred             eEeCccCCCc--CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCe-------E---ECCCC-CCcCCeEECCCC
Confidence            5443322222  24899999988876643         2678888877541       1   22221 1223578999 7


Q ss_pred             CEEEEeCCC-C--cEEEEeCCCCcEEEEEeccCCCeeE
Q 014475          281 DLLISGSED-G--MVRVWDPITHNIVRMFRLAKGPVNN  315 (424)
Q Consensus       281 ~~l~t~~~d-g--~i~iwd~~~~~~~~~~~~~~~~v~~  315 (424)
                      +.++....+ +  .+.+.++. |.....+....+.+..
T Consensus       380 ~~I~f~~~~~~~~~L~~~~l~-g~~~~~l~~~~g~~~~  416 (419)
T PRK04043        380 GSIMFIKYLGNQSALGIIRLN-YNKSFLFPLKVGKIQS  416 (419)
T ss_pred             CEEEEEEccCCcEEEEEEecC-CCeeEEeecCCCccCC
Confidence            766655432 2  36666664 4444445444444443

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.11  E-value=1.2e-09  Score=99.74  Aligned_cols=226  Identities=18%  Similarity=0.244  Sum_probs=163.5

Q ss_pred             cCCCCeeEEEECCCCCEEEEecCCCcEEEEEccCc-ceeeeec-cccCCeEEEEEccCC---cEEEEeeCCCcEEEEeCC
Q 014475           78 LPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASG-RLLKKWH-AHYRAVTCLVFSEDG---SFLISGSEDGCVRIWSLL  152 (424)
Q Consensus        78 ~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~-~~~~~~~-~~~~~i~~~~~~~~~---~~l~s~~~dg~i~iwd~~  152 (424)
                      .-.+++.++..+|.|+-+|.++.-| +.+.|+... ...+-+. ...-.|-.+.|+|..   ..+++.+ ...-.+|++.
T Consensus        22 ~v~~~~~a~si~p~grdi~lAsr~g-l~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts-~qkaiiwnlA   99 (1081)
T KOG0309|consen   22 KVDGGFNAVSINPSGRDIVLASRQG-LYIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTS-NQKAIIWNLA   99 (1081)
T ss_pred             EecCcccceeeccccchhhhhhhcC-eEEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecC-cchhhhhhhh
Confidence            3467889999999999999998876 666777543 3222221 112346678888743   3444444 4466789986


Q ss_pred             cccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCce-eeeee-cCcceeEEEECCCC
Q 014475          153 TVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRL-LRNIV-FPSVIDAIALDPAE  230 (424)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~-~~~~~-~~~~i~~~~~~~~~  230 (424)
                      ..        ........+.+|...|+++.|.+... ..+++++.|-.+..||+++... +.... -......+.|+-..
T Consensus       100 ~s--------s~~aIef~lhghsraitd~n~~~q~p-dVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~  170 (1081)
T KOG0309|consen  100 KS--------SSNAIEFVLHGHSRAITDINFNPQHP-DVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKD  170 (1081)
T ss_pred             cC--------CccceEEEEecCccceeccccCCCCC-cceeeccccccceeeeccCCCcceeeeecccccCceeeecccC
Confidence            52        23334556788999999999998876 8999999999999999987643 33333 45667889999876


Q ss_pred             CEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC--CCEEEEeCCCCcEEEEeCCCCcEE-EEEe
Q 014475          231 HVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST--GDLLISGSEDGMVRVWDPITHNIV-RMFR  307 (424)
Q Consensus       231 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~l~t~~~dg~i~iwd~~~~~~~-~~~~  307 (424)
                      ..+.+.+..+.|++||.+.+.        .++..+++|...|+.+.|..  ...+.+.+.||+|++||......- ....
T Consensus       171 p~vlasshg~~i~vwd~r~gs--------~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~v  242 (1081)
T KOG0309|consen  171 PNVLASSHGNDIFVWDLRKGS--------TPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTV  242 (1081)
T ss_pred             cchhhhccCCceEEEeccCCC--------cceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceec
Confidence            677777888899999999986        77888899999999999988  778899999999999998754221 1122


Q ss_pred             ccCCCeeEEEEEecC
Q 014475          308 LAKGPVNNILVVRRP  322 (424)
Q Consensus       308 ~~~~~v~~l~~s~~~  322 (424)
                      ....+|+.-.+.|-|
T Consensus       243 tt~~piw~~r~~Pfg  257 (1081)
T KOG0309|consen  243 TTNFPIWRGRYLPFG  257 (1081)
T ss_pred             cccCcceeccccccC
Confidence            234466666666643

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=99.09  E-value=9.2e-10  Score=93.61  Aligned_cols=155  Identities=18%  Similarity=0.222  Sum_probs=110.0

Q ss_pred             eecCCCccccCCCCceeEEEEECCCCcee----eeecCCCCeeEEEECCCCCEEEEec---CCCcEEEEEccCcceeeee
Q 014475           46 FLASSQLREQPSASSGSILYWSWSKPQVE----VKSLPAEPIKPIAANSHGTYIAGGG---QSGDIYMWEVASGRLLKKW  118 (424)
Q Consensus        46 ~~~~~~~l~~~~~~~g~i~vwd~~~~~~~----~~~~~~~~v~~~~~s~~~~~l~~~~---~dg~v~iwd~~~~~~~~~~  118 (424)
                      .++.++++|++..+ ....++++......    -...-...-+++.|..+......+.   ....+.+|...++.. ..+
T Consensus        70 ~s~~~~llAv~~~~-K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~~-~~~  147 (390)
T KOG3914|consen   70 TSDSGRLVAVATSS-KQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGRC-EPI  147 (390)
T ss_pred             cCCCceEEEEEeCC-CceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeeecccccCc-chh
Confidence            77888998888776 67666666543321    1112233445555555555555443   444555665554433 344


Q ss_pred             ccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEe-ecCCcCceeEEEEEEcCceeEEEEEeC
Q 014475          119 HAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHS-FTGHTLRITDIVIGYGGVSATIVSASE  197 (424)
Q Consensus       119 ~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~l~~~~~  197 (424)
                      -+|-+.++.++|+||+++++++..|..|++-....           ...+.. ..+|+.-|..++.-++   ..|++++.
T Consensus       148 lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa-----------~f~IesfclGH~eFVS~isl~~~---~~LlS~sG  213 (390)
T KOG3914|consen  148 LGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPA-----------TFVIESFCLGHKEFVSTISLTDN---YLLLSGSG  213 (390)
T ss_pred             hhhhhhhheeeecCCCCEEEEecCCceEEEEecCc-----------ccchhhhccccHhheeeeeeccC---ceeeecCC
Confidence            57999999999999999999999999999987733           222222 3579999999999877   57999999


Q ss_pred             CCcEEEEecCCCceeeeee
Q 014475          198 DRTCKVWSLLKGRLLRNIV  216 (424)
Q Consensus       198 d~~v~iwd~~~~~~~~~~~  216 (424)
                      |+++++||+.+++.+..+.
T Consensus       214 D~tlr~Wd~~sgk~L~t~d  232 (390)
T KOG3914|consen  214 DKTLRLWDITSGKLLDTCD  232 (390)
T ss_pred             CCcEEEEecccCCcccccc
Confidence            9999999999999887665

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.08  E-value=2.9e-09  Score=87.65  Aligned_cols=210  Identities=16%  Similarity=0.265  Sum_probs=144.9

Q ss_pred             ccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCc------------CceeEEEEEEcCc
Q 014475          121 HYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHT------------LRITDIVIGYGGV  188 (424)
Q Consensus       121 ~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~------------~~i~~~~~~~~~~  188 (424)
                      ....|+++.|...|.++++|...|+|.+|.-+.... +     ..+....+++|.            ..|..+.|..++.
T Consensus        25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~-c-----eykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~   98 (460)
T COG5170          25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYG-C-----EYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTG   98 (460)
T ss_pred             ccceeeEEEeccccceEeecCCCceEEEeecccccc-c-----chhhhhhhcccccchhhhhhccHHHHhhheeeecCCC
Confidence            345799999999999999999999999998755321 1     112222334443            4678888888776


Q ss_pred             eeEEEEEeCCCcEEEEecCCCcee------------------------------------------eee--ecCcceeEE
Q 014475          189 SATIVSASEDRTCKVWSLLKGRLL------------------------------------------RNI--VFPSVIDAI  224 (424)
Q Consensus       189 ~~~l~~~~~d~~v~iwd~~~~~~~------------------------------------------~~~--~~~~~i~~~  224 (424)
                      ...++..+.|.+|++|.+......                                          +..  .|+..++++
T Consensus        99 r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSi  178 (460)
T COG5170          99 RNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSI  178 (460)
T ss_pred             cceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeee
Confidence            688889999999999987543100                                          000  144567888


Q ss_pred             EECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeeccc-----CcCeEEEEecC--CCEEEEeCCCCcEEEEeC
Q 014475          225 ALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDH-----SKAVTCLAYST--GDLLISGSEDGMVRVWDP  297 (424)
Q Consensus       225 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~-----~~~i~~~~~~~--~~~l~t~~~dg~i~iwd~  297 (424)
                      .+..+...++++ .|-+|.+|++.-.....      .+...+.|     ...|++..|+|  .+.+.-.+..|.|++-|+
T Consensus       179 S~NsD~et~lSa-DdLrINLWnl~i~D~sF------nIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~Dl  251 (460)
T COG5170         179 SFNSDKETLLSA-DDLRINLWNLEIIDGSF------NIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDL  251 (460)
T ss_pred             eecCchheeeec-cceeeeeccccccCCce------EEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhh
Confidence            888888777654 46689999987654321      12233333     34688999999  677777888999999999


Q ss_pred             CCCcEE------E--E--------EeccCCCeeEEEEEecCceeeeccCCCceeeccCCCCCC
Q 014475          298 ITHNIV------R--M--------FRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGSQL  344 (424)
Q Consensus       298 ~~~~~~------~--~--------~~~~~~~v~~l~~s~~~~~l~~~~~d~~i~iw~~~~~~~  344 (424)
                      +...+.      .  +        +..-...|..+.|+++|+++++-+. -++++||++..+.
T Consensus       252 Rq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~  313 (460)
T COG5170         252 RQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKN  313 (460)
T ss_pred             hhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccC
Confidence            843211      1  1        1122247889999999999988643 5799999986553

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=99.07  E-value=6.5e-10  Score=92.61  Aligned_cols=156  Identities=17%  Similarity=0.240  Sum_probs=121.0

Q ss_pred             ccCCCCceeEEEEECCCCceeeeecCCCCeeEEEECCCCCEEEEecCCCcEEEEEccCc-----ceeeeeccccCCeEEE
Q 014475           54 EQPSASSGSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASG-----RLLKKWHAHYRAVTCL  128 (424)
Q Consensus        54 ~~~~~~~g~i~vwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~-----~~~~~~~~~~~~i~~~  128 (424)
                      ++.|.+ ..|-+-|++++..... ...+.|.++.|...++++..|+.+|.|..+|++.+     .+...+ -|...|+++
T Consensus       228 fs~G~s-qqv~L~nvetg~~qsf-~sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rl-yh~Ssvtsl  304 (425)
T KOG2695|consen  228 FSVGLS-QQVLLTNVETGHQQSF-QSKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRL-YHDSSVTSL  304 (425)
T ss_pred             eccccc-ceeEEEEeeccccccc-ccchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEE-EcCcchhhh
Confidence            344444 6788888877654332 26788999999999999999999999999999865     233333 388999999


Q ss_pred             EEcc-CCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecC
Q 014475          129 VFSE-DGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLL  207 (424)
Q Consensus       129 ~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~  207 (424)
                      .... ++++|++.+.+|+|++||++...        ...-+..+.+|...-.-+-+.-+.+...+++++.|-..+||.++
T Consensus       305 q~Lq~s~q~LmaS~M~gkikLyD~R~~K--------~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~  376 (425)
T KOG2695|consen  305 QILQFSQQKLMASDMTGKIKLYDLRATK--------CKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLD  376 (425)
T ss_pred             hhhccccceEeeccCcCceeEeeehhhh--------cccceeeeecccccccccccccccccceEEEccCeeEEEEEecc
Confidence            8876 78899999999999999997521        12236778888776666666555555889999999999999999


Q ss_pred             CCceeeeeecCcc
Q 014475          208 KGRLLRNIVFPSV  220 (424)
Q Consensus       208 ~~~~~~~~~~~~~  220 (424)
                      .+.++.+++.+..
T Consensus       377 ~ghLl~tipf~~s  389 (425)
T KOG2695|consen  377 SGHLLCTIPFPYS  389 (425)
T ss_pred             cCceeeccCCCCc
Confidence            9999998885543

>PRK04043 tolB translocation protein TolB; Provisional

Probab=99.06  E-value=2.4e-07  Score=84.84  Aligned_cols=214  Identities=14%  Similarity=0.008  Sum_probs=129.7

Q ss_pred             CCceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCc-cccCCCC--ceeEEEEECCCCceeeeecCCCCeeEEEE
Q 014475           12 DTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQL-REQPSAS--SGSILYWSWSKPQVEVKSLPAEPIKPIAA   88 (424)
Q Consensus        12 dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-l~~~~~~--~g~i~vwd~~~~~~~~~~~~~~~v~~~~~   88 (424)
                      ...|.+=|.. |...+.+...    .......  |+|+|+. ++..+..  ...|.++|+.+++........+......|
T Consensus       168 ~~~l~~~d~d-g~~~~~~~~~----~~~~~p~--wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g~~~~~~~  240 (419)
T PRK04043        168 KSNIVLADYT-LTYQKVIVKG----GLNIFPK--WANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQGMLVVSDV  240 (419)
T ss_pred             cceEEEECCC-CCceeEEccC----CCeEeEE--ECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCCCcEEeeEE
Confidence            3456665554 3334433321    1334445  9999985 5543322  36799999988877665556666778899


Q ss_pred             CCCCCEEEEe-cC--CCcEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEeeC-CC--cEEEEeCCcccchhcccc
Q 014475           89 NSHGTYIAGG-GQ--SGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSE-DG--CVRIWSLLTVFEECESQR  162 (424)
Q Consensus        89 s~~~~~l~~~-~~--dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~-dg--~i~iwd~~~~~~~~~~~~  162 (424)
                      +|||+.++.. +.  +..|.++|+.+++.. .+..+........|+|||+.|+..+. .+  .|.+.|+.++..      
T Consensus       241 SPDG~~la~~~~~~g~~~Iy~~dl~~g~~~-~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~------  313 (419)
T PRK04043        241 SKDGSKLLLTMAPKGQPDIYLYDTNTKTLT-QITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSV------  313 (419)
T ss_pred             CCCCCEEEEEEccCCCcEEEEEECCCCcEE-EcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCe------
Confidence            9999877654 22  356888898777643 34333333345689999987776653 33  577777755321      


Q ss_pred             cccceEEeecCCcCceeEEEEEEcCceeEEEEEeCC---------CcEEEEecCCCceeeeeecCcceeEEEECCCCCEE
Q 014475          163 ASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASED---------RTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVF  233 (424)
Q Consensus       163 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d---------~~v~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l  233 (424)
                         ..+ ...+.  .  ...|+|++  +.++..+..         ..|.+.|+.+++. ..+..........|+|+|+.+
T Consensus       314 ---~rl-t~~g~--~--~~~~SPDG--~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~-~~LT~~~~~~~p~~SPDG~~I  382 (419)
T PRK04043        314 ---EQV-VFHGK--N--NSSVSTYK--NYIVYSSRETNNEFGKNTFNLYLISTNSDYI-RRLTANGVNQFPRFSSDGGSI  382 (419)
T ss_pred             ---EeC-ccCCC--c--CceECCCC--CEEEEEEcCCCcccCCCCcEEEEEECCCCCe-EECCCCCCcCCeEECCCCCEE
Confidence               011 11111  1  23799998  566555433         3678888887764 334333344468899999988


Q ss_pred             EEEeCCC---cEEEEEcCCC
Q 014475          234 YAGSRDG---SIYIAALNAE  250 (424)
Q Consensus       234 ~~~~~dg---~i~i~d~~~~  250 (424)
                      +.....+   .+.+.+++..
T Consensus       383 ~f~~~~~~~~~L~~~~l~g~  402 (419)
T PRK04043        383 MFIKYLGNQSALGIIRLNYN  402 (419)
T ss_pred             EEEEccCCcEEEEEEecCCC
Confidence            7665432   3566666553

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=99.06  E-value=1.3e-07  Score=77.59  Aligned_cols=239  Identities=14%  Similarity=0.104  Sum_probs=133.9

Q ss_pred             eecCCCccccCCCCceeEEEEECCCCc------eeeeecCCCCeeEEEECCCCCEEEEecCCCcEEEEEccCcceeeeec
Q 014475           46 FLASSQLREQPSASSGSILYWSWSKPQ------VEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWH  119 (424)
Q Consensus        46 ~~~~~~~l~~~~~~~g~i~vwd~~~~~------~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~  119 (424)
                      .+.+|+.||+.-.  ..|.+=..+..-      ........-.=+.++||||+..||.+...|+|++||+.. ..+..+.
T Consensus         5 ~~~~Gk~lAi~qd--~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g-~~lf~I~   81 (282)
T PF15492_consen    5 LSSDGKLLAILQD--QCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMG-SELFVIP   81 (282)
T ss_pred             ecCCCcEEEEEec--cEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEeccc-ceeEEcC
Confidence            4567777776654  466665544321      112222334567899999999999999999999999864 3333332


Q ss_pred             c-------ccCCeEEEEEccC------CcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecC-CcCceeEEEEEE
Q 014475          120 A-------HYRAVTCLVFSED------GSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTG-HTLRITDIVIGY  185 (424)
Q Consensus       120 ~-------~~~~i~~~~~~~~------~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~  185 (424)
                      .       -...|..+.|.+.      ...|++-..+|.++-|-+..+...    .........+.. +...|.++.++|
T Consensus        82 p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q----~y~e~hsfsf~~~yp~Gi~~~vy~p  157 (282)
T PF15492_consen   82 PAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQ----GYQENHSFSFSSHYPHGINSAVYHP  157 (282)
T ss_pred             cccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCC----cceeeEEEEecccCCCceeEEEEcC
Confidence            2       2356777777542      124666667788877765321100    011112223333 477899999999


Q ss_pred             cCceeEEEEEeCCCcEEEEecCCCceeeeeecCcceeEEEECCCCCE-E-EEEeCCC------cEEEEEcCCCCCCCCCc
Q 014475          186 GGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHV-F-YAGSRDG------SIYIAALNAESPSTSSY  257 (424)
Q Consensus       186 ~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~-l-~~~~~dg------~i~i~d~~~~~~~~~~~  257 (424)
                      ..  ++|+.|+....      +++.   .......+++-..-.+..+ . ++...|+      +..+|.+-+.       
T Consensus       158 ~h--~LLlVgG~~~~------~~~~---s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~-------  219 (282)
T PF15492_consen  158 KH--RLLLVGGCEQN------QDGM---SKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSF-------  219 (282)
T ss_pred             CC--CEEEEeccCCC------CCcc---ccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccce-------
Confidence            87  67666664322      0000   0001111221111111111 0 1111111      1122222211       


Q ss_pred             CceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCCCcEEEEEeccCC
Q 014475          258 GMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKG  311 (424)
Q Consensus       258 ~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~  311 (424)
                        ............|..|..+| +..||+...+|.|.+|++.+-++.+.+..++.
T Consensus       220 --~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W~~~eq  272 (282)
T PF15492_consen  220 --KFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSWKQDEQ  272 (282)
T ss_pred             --eeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhcccchhhC
Confidence              11111223467899999999 99999999999999999999888887765443

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.06  E-value=3e-09  Score=91.83  Aligned_cols=221  Identities=17%  Similarity=0.187  Sum_probs=163.1

Q ss_pred             ccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeC-CC
Q 014475          121 HYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASE-DR  199 (424)
Q Consensus       121 ~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~-d~  199 (424)
                      |...|+.+.-. -.+++++++.||.++.|.-..        ......+..+..|...|.+++.+.++  ..+.+.+. |.
T Consensus         8 hrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~--------isGvEfVKhFraHL~~I~sl~~S~dg--~L~~Sv~d~Dh   76 (558)
T KOG0882|consen    8 HRDVITHVFPT-KAKFIIQASLDGHKKFWKKSR--------ISGVEFVKHFRAHLGVILSLAVSYDG--WLFRSVEDPDH   76 (558)
T ss_pred             ccceeeeEeee-hhheEEeeecchhhhhcCCCC--------ccceeehhhhHHHHHHHHhhhccccc--eeEeeccCccc
Confidence            77777776654 567999999999999997632        02233556677899999999999998  78888777 99


Q ss_pred             cEEEEecCCCceeeeeecCcceeEEEECCC-C---CEEEEE-eCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEE
Q 014475          200 TCKVWSLLKGRLLRNIVFPSVIDAIALDPA-E---HVFYAG-SRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTC  274 (424)
Q Consensus       200 ~v~iwd~~~~~~~~~~~~~~~i~~~~~~~~-~---~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~  274 (424)
                      .++++|+.+-..+.-+........++|... |   ..++++ -.++.+.++|-.....       +....-.-|..+|..
T Consensus        77 s~KvfDvEn~DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~-------q~~~fkklH~sPV~~  149 (558)
T KOG0882|consen   77 SVKVFDVENFDMINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFC-------QDGYFKKLHFSPVKK  149 (558)
T ss_pred             ceeEEEeeccchhhhcccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcC-------ccceecccccCceEE
Confidence            999999988776655553333333344322 2   134443 4678999999877642       233344458999999


Q ss_pred             EEecC-CCEEEEeCCCCcEEEEeCCC------CcEE---------EEEeccCCCeeEEEEEecCceeeeccCCCceeecc
Q 014475          275 LAYST-GDLLISGSEDGMVRVWDPIT------HNIV---------RMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSR  338 (424)
Q Consensus       275 ~~~~~-~~~l~t~~~dg~i~iwd~~~------~~~~---------~~~~~~~~~v~~l~~s~~~~~l~~~~~d~~i~iw~  338 (424)
                      +.+.+ ++.+++....|.|.-|....      .+..         ..+.......+++.|+|++..+.+-+.|..|+++.
T Consensus       150 i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~  229 (558)
T KOG0882|consen  150 IRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFV  229 (558)
T ss_pred             EEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEE
Confidence            99999 99999999999999999772      1111         12223445788999999999999999999999999


Q ss_pred             CCCCCCCCCcccccccccccc
Q 014475          339 RHGSQLPPPLDKYVTSADEDV  359 (424)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~~~~  359 (424)
                      ..++++.+.+++.........
T Consensus       230 ~KtGklvqeiDE~~t~~~~q~  250 (558)
T KOG0882|consen  230 FKTGKLVQEIDEVLTDAQYQP  250 (558)
T ss_pred             eccchhhhhhhccchhhhhcc
Confidence            999999888877766555443

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.03  E-value=3.3e-09  Score=91.59  Aligned_cols=255  Identities=14%  Similarity=0.108  Sum_probs=170.4

Q ss_pred             cCCCCeeEEEECCCCCEEEEecCCCcEEEEEccC--c-ceeeeeccccCCeEEEEEccCCcEEEEeeC-CCcEEEEeCCc
Q 014475           78 LPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVAS--G-RLLKKWHAHYRAVTCLVFSEDGSFLISGSE-DGCVRIWSLLT  153 (424)
Q Consensus        78 ~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~--~-~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~-dg~i~iwd~~~  153 (424)
                      .|.+.|+.+... -.+++.+++.||.++.|.-..  + +.+..+..|...|.+++.+-++.++.+.+. |..++++|+++
T Consensus         7 mhrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn   85 (558)
T KOG0882|consen    7 MHRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVEN   85 (558)
T ss_pred             cccceeeeEeee-hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeec
Confidence            466667666554 457899999999999998543  1 345566789999999999999999999777 99999999966


Q ss_pred             ccchhcccccccceEEeecCCcCceeEEEEEEc-CceeEEEEEeCCCcEEEEecCCCcee-eeee--cCcceeEEEECCC
Q 014475          154 VFEECESQRASHLYLHSFTGHTLRITDIVIGYG-GVSATIVSASEDRTCKVWSLLKGRLL-RNIV--FPSVIDAIALDPA  229 (424)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~l~~~~~d~~v~iwd~~~~~~~-~~~~--~~~~i~~~~~~~~  229 (424)
                      ..-.         ....+.--.+.+..+ .++. .....-++.-.++.+.++|-....+. ..+.  |..+|.++.+.|.
T Consensus        86 ~Dmi---------nmiKL~~lPg~a~wv-~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa  155 (558)
T KOG0882|consen   86 FDMI---------NMIKLVDLPGFAEWV-TSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQA  155 (558)
T ss_pred             cchh---------hhcccccCCCceEEe-cCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeecc
Confidence            2211         011111111221111 1111 10022233345788999997654422 2222  8899999999999


Q ss_pred             CCEEEEEeCCCcEEEEEcCCCCCCCC---CcC---ceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCCCcE
Q 014475          230 EHVFYAGSRDGSIYIAALNAESPSTS---SYG---MHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNI  302 (424)
Q Consensus       230 ~~~l~~~~~dg~i~i~d~~~~~~~~~---~~~---~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~  302 (424)
                      +..+++....|.|.-|.....-+...   ...   -..+..+........++.|+| +..+.+-+.|..|++++.++|+.
T Consensus       156 ~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGkl  235 (558)
T KOG0882|consen  156 GDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKL  235 (558)
T ss_pred             ccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchh
Confidence            99999999999999999874111000   000   111222333456788999999 99999999999999999999887


Q ss_pred             EEEEe--------------------------------ccC-CCeeEEEEEecCceeeeccCCCceeeccCCCCCC
Q 014475          303 VRMFR--------------------------------LAK-GPVNNILVVRRPLYLNLGSFSNPHTSSRRHGSQL  344 (424)
Q Consensus       303 ~~~~~--------------------------------~~~-~~v~~l~~s~~~~~l~~~~~d~~i~iw~~~~~~~  344 (424)
                      ++.+.                                .|. ..-+.+.|...|++|+-|+-=| |++.++.++..
T Consensus       236 vqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g-ikvin~~tn~v  309 (558)
T KOG0882|consen  236 VQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-IKVINLDTNTV  309 (558)
T ss_pred             hhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-EEEEEeecCeE
Confidence            66543                                121 1446778888999998876554 66666666554

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=99.03  E-value=1e-06  Score=74.64  Aligned_cols=231  Identities=18%  Similarity=0.225  Sum_probs=154.8

Q ss_pred             CCeeEEEECC-CCCEEEEecCCCc-EEEEEccCcceeeeeccccCCe--EEEEEccCCcEEEEeeC-----CCcEEEEeC
Q 014475           81 EPIKPIAANS-HGTYIAGGGQSGD-IYMWEVASGRLLKKWHAHYRAV--TCLVFSEDGSFLISGSE-----DGCVRIWSL  151 (424)
Q Consensus        81 ~~v~~~~~s~-~~~~l~~~~~dg~-v~iwd~~~~~~~~~~~~~~~~i--~~~~~~~~~~~l~s~~~-----dg~i~iwd~  151 (424)
                      .....++.+| .+..++.+-.-|. ..+||..+++....+....+.-  -.-.|++||++|++.-.     .|.|-|||.
T Consensus         5 ~RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~   84 (305)
T PF07433_consen    5 ARGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDA   84 (305)
T ss_pred             ccccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEEC
Confidence            4456788899 5667777777665 8899999998887765433221  24789999999998644     578999999


Q ss_pred             CcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEe------------------CCCcEEEEecCCCceee
Q 014475          152 LTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSAS------------------EDRTCKVWSLLKGRLLR  213 (424)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~------------------~d~~v~iwd~~~~~~~~  213 (424)
                      ..          ....+..+..|.-.-..+.+.|++  ..|+.+.                  .+-.+...|..+|+.+.
T Consensus        85 ~~----------~~~ri~E~~s~GIGPHel~l~pDG--~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~  152 (305)
T PF07433_consen   85 AR----------GYRRIGEFPSHGIGPHELLLMPDG--ETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLE  152 (305)
T ss_pred             cC----------CcEEEeEecCCCcChhhEEEcCCC--CEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceee
Confidence            63          344566677777777778888887  4555432                  23457777888888887


Q ss_pred             eee-----cCcceeEEEECCCCCEEEEEeCCC-------cEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-C
Q 014475          214 NIV-----FPSVIDAIALDPAEHVFYAGSRDG-------SIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-G  280 (424)
Q Consensus       214 ~~~-----~~~~i~~~~~~~~~~~l~~~~~dg-------~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~  280 (424)
                      ...     +...+..+++.++|..++..-..|       .+.+++.........    -.......-...+-+|++++ +
T Consensus       153 q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~~~~~~----~p~~~~~~l~~Y~gSIa~~~~g  228 (305)
T PF07433_consen  153 QVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGALRLLP----APEEQWRRLNGYIGSIAADRDG  228 (305)
T ss_pred             eeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCcceecc----CChHHHHhhCCceEEEEEeCCC
Confidence            744     445799999999988776654433       233333332110000    00011223457789999999 6


Q ss_pred             CEEEEe-CCCCcEEEEeCCCCcEEEEEeccCCCeeEEEEEecCceeeeccC
Q 014475          281 DLLISG-SEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSF  330 (424)
Q Consensus       281 ~~l~t~-~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~  330 (424)
                      .++++. -..+.+.+||..+++.+......  .+..++..+++ ++++.+.
T Consensus       229 ~~ia~tsPrGg~~~~~d~~tg~~~~~~~l~--D~cGva~~~~~-f~~ssG~  276 (305)
T PF07433_consen  229 RLIAVTSPRGGRVAVWDAATGRLLGSVPLP--DACGVAPTDDG-FLVSSGQ  276 (305)
T ss_pred             CEEEEECCCCCEEEEEECCCCCEeeccccC--ceeeeeecCCc-eEEeCCC
Confidence            666544 47889999999999998887643  45677777776 6666544

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=99.02  E-value=6.9e-08  Score=82.21  Aligned_cols=228  Identities=16%  Similarity=0.117  Sum_probs=135.6

Q ss_pred             CCceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCceeeeecCCCCeeEEEECCC
Q 014475           12 DTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSLPAEPIKPIAANSH   91 (424)
Q Consensus        12 dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~~~~~~~v~~~~~s~~   91 (424)
                      +|+|..||..+|+.+-+...... .....+.   ..+++..++++..+ +.|..||..+++........+++...... +
T Consensus         2 ~g~l~~~d~~tG~~~W~~~~~~~-~~~~~~~---~~~~~~~v~~~~~~-~~l~~~d~~tG~~~W~~~~~~~~~~~~~~-~   75 (238)
T PF13360_consen    2 DGTLSALDPRTGKELWSYDLGPG-IGGPVAT---AVPDGGRVYVASGD-GNLYALDAKTGKVLWRFDLPGPISGAPVV-D   75 (238)
T ss_dssp             TSEEEEEETTTTEEEEEEECSSS-CSSEEET---EEEETTEEEEEETT-SEEEEEETTTSEEEEEEECSSCGGSGEEE-E
T ss_pred             CCEEEEEECCCCCEEEEEECCCC-CCCccce---EEEeCCEEEEEcCC-CEEEEEECCCCCEEEEeeccccccceeee-c
Confidence            78999999999999988754221 2222221   23355666666555 99999999999888776655544333222 3


Q ss_pred             CCEEEEecCCCcEEEEEccCcceeeee-cccc---CCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccce
Q 014475           92 GTYIAGGGQSGDIYMWEVASGRLLKKW-HAHY---RAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLY  167 (424)
Q Consensus        92 ~~~l~~~~~dg~v~iwd~~~~~~~~~~-~~~~---~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~  167 (424)
                      +..+++++.++.++.+|..+|+.+... ....   ...........++.++.+..++.|..+|++++.............
T Consensus        76 ~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~  155 (238)
T PF13360_consen   76 GGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRG  155 (238)
T ss_dssp             TTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-S
T ss_pred             ccccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCC
Confidence            455666667889999999999988874 3221   112223333347788888889999999998754322111100000


Q ss_pred             EEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeeecCcceeEEEECCCCCEEEEEeCCCcEEEEEc
Q 014475          168 LHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAAL  247 (424)
Q Consensus       168 ~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~  247 (424)
                      ...+. ....+..-....+   ..++.++.++.+.-+|+.+++.+.... ...+... ..+.+..+++++.++.+..||+
T Consensus       156 ~~~~~-~~~~~~~~~~~~~---~~v~~~~~~g~~~~~d~~tg~~~w~~~-~~~~~~~-~~~~~~~l~~~~~~~~l~~~d~  229 (238)
T PF13360_consen  156 SSPIS-SFSDINGSPVISD---GRVYVSSGDGRVVAVDLATGEKLWSKP-ISGIYSL-PSVDGGTLYVTSSDGRLYALDL  229 (238)
T ss_dssp             S--EE-EETTEEEEEECCT---TEEEEECCTSSEEEEETTTTEEEEEEC-SS-ECEC-EECCCTEEEEEETTTEEEEEET
T ss_pred             Cccee-eecccccceEEEC---CEEEEEcCCCeEEEEECCCCCEEEEec-CCCccCC-ceeeCCEEEEEeCCCEEEEEEC
Confidence            00000 0001111111112   356666666754444999998665333 3333331 3457778888889999999999


Q ss_pred             CCCC
Q 014475          248 NAES  251 (424)
Q Consensus       248 ~~~~  251 (424)
                      .+++
T Consensus       230 ~tG~  233 (238)
T PF13360_consen  230 KTGK  233 (238)
T ss_dssp             TTTE
T ss_pred             CCCC
Confidence            9974

...

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.99  E-value=2e-09  Score=89.75  Aligned_cols=151  Identities=13%  Similarity=0.135  Sum_probs=118.0

Q ss_pred             EEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCC-----cee
Q 014475          138 ISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKG-----RLL  212 (424)
Q Consensus       138 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~-----~~~  212 (424)
                      ++.+.+-.+-+-|++++..            +.+. .++.|.++.|...+  +.++.|+..|.|..+|++.+     .+.
T Consensus       228 fs~G~sqqv~L~nvetg~~------------qsf~-sksDVfAlQf~~s~--nLv~~GcRngeI~~iDLR~rnqG~~~~a  292 (425)
T KOG2695|consen  228 FSVGLSQQVLLTNVETGHQ------------QSFQ-SKSDVFALQFAGSD--NLVFNGCRNGEIFVIDLRCRNQGNGWCA  292 (425)
T ss_pred             ecccccceeEEEEeecccc------------cccc-cchhHHHHHhcccC--CeeEecccCCcEEEEEeeecccCCCcce
Confidence            4455566788888876421            1222 56678888888766  89999999999999999864     567


Q ss_pred             eeeecCcceeEEEECC-CCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEE--ecC-CCEEEEeCC
Q 014475          213 RNIVFPSVIDAIALDP-AEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLA--YST-GDLLISGSE  288 (424)
Q Consensus       213 ~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~--~~~-~~~l~t~~~  288 (424)
                      ..+.|+..|+++..-. ++.+|++.+.+|+|.+||++..+..      .-+....+|...-.-+-  ..+ ...+++++.
T Consensus       293 ~rlyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~------~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~Gd  366 (425)
T KOG2695|consen  293 QRLYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCK------KSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGD  366 (425)
T ss_pred             EEEEcCcchhhhhhhccccceEeeccCcCceeEeeehhhhcc------cceeeeecccccccccccccccccceEEEccC
Confidence            7788999999999887 8999999999999999999986421      23677778865444433  345 778899999


Q ss_pred             CCcEEEEeCCCCcEEEEEecc
Q 014475          289 DGMVRVWDPITHNIVRMFRLA  309 (424)
Q Consensus       289 dg~i~iwd~~~~~~~~~~~~~  309 (424)
                      |...|||.+++|.++.+++..
T Consensus       367 DcytRiWsl~~ghLl~tipf~  387 (425)
T KOG2695|consen  367 DCYTRIWSLDSGHLLCTIPFP  387 (425)
T ss_pred             eeEEEEEecccCceeeccCCC
Confidence            999999999999999988743

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.98  E-value=2.8e-07  Score=86.35  Aligned_cols=221  Identities=18%  Similarity=0.202  Sum_probs=147.2

Q ss_pred             EECCCCCEEEEecCCCcEEEEEccCcceeeeeccccCC-eEEEEEccCCcEEEEeeCCCc-----EEEEeCCcccchhcc
Q 014475           87 AANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRA-VTCLVFSEDGSFLISGSEDGC-----VRIWSLLTVFEECES  160 (424)
Q Consensus        87 ~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~-i~~~~~~~~~~~l~s~~~dg~-----i~iwd~~~~~~~~~~  160 (424)
                      +|++.+..++.|+.+|.|.+.+ ++-+.++.++.+... |..+....+.++|++.+.|+.     +++|+++.....   
T Consensus        30 c~~s~~~~vvigt~~G~V~~Ln-~s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n---  105 (933)
T KOG2114|consen   30 CCSSSTGSVVIGTADGRVVILN-SSFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKN---  105 (933)
T ss_pred             EEcCCCceEEEeeccccEEEec-ccceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCC---
Confidence            4678889999999999999987 344555778777776 444444444467888777654     899999764321   


Q ss_pred             cccccceE--Eeec-----CCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecC---CC--ceeeeeecCcceeEEEECC
Q 014475          161 QRASHLYL--HSFT-----GHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLL---KG--RLLRNIVFPSVIDAIALDP  228 (424)
Q Consensus       161 ~~~~~~~~--~~~~-----~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~---~~--~~~~~~~~~~~i~~~~~~~  228 (424)
                        ..+.++  ....     ....++.+++++.+-  +.+++|-.+|.|..+.-+   ..  +.........+|+.+++..
T Consensus       106 --~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l--~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~  181 (933)
T KOG2114|consen  106 --NSPQCLYEHRIFTIKNPTNPSPASSLAVSEDL--KTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRS  181 (933)
T ss_pred             --CCcceeeeeeeeccCCCCCCCcceEEEEEccc--cEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEec
Confidence              112222  1222     245678889999886  899999999999988522   11  1122223568999999998


Q ss_pred             CCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCCCcEEEEEe
Q 014475          229 AEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFR  307 (424)
Q Consensus       229 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~~~~~~  307 (424)
                      ++..++-......|.+|.+....        .....+..|...+.|..+++ ...+++++. .-+.+|+.....+...+.
T Consensus       182 d~~s~lFv~Tt~~V~~y~l~gr~--------p~~~~ld~~G~~lnCss~~~~t~qfIca~~-e~l~fY~sd~~~~cfaf~  252 (933)
T KOG2114|consen  182 DGKSVLFVATTEQVMLYSLSGRT--------PSLKVLDNNGISLNCSSFSDGTYQFICAGS-EFLYFYDSDGRGPCFAFE  252 (933)
T ss_pred             CCceeEEEEecceeEEEEecCCC--------cceeeeccCCccceeeecCCCCccEEEecC-ceEEEEcCCCcceeeeec
Confidence            88773333334578999998542        23455777889999999999 443666654 459999988777767776


Q ss_pred             -ccCCCeeEEEEEecCceeee
Q 014475          308 -LAKGPVNNILVVRRPLYLNL  327 (424)
Q Consensus       308 -~~~~~v~~l~~s~~~~~l~~  327 (424)
                       +|..   -+.|...|..|+.
T Consensus       253 ~g~kk---~~~~~~~g~~L~v  270 (933)
T KOG2114|consen  253 VGEKK---EMLVFSFGLLLCV  270 (933)
T ss_pred             CCCeE---EEEEEecCEEEEE
Confidence             5543   2333333444443

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.97  E-value=2e-06  Score=73.45  Aligned_cols=211  Identities=16%  Similarity=0.129  Sum_probs=135.3

Q ss_pred             eec-CCCccccCCCCceeEEEEECCCCceeeeecCCCCeeEEEEC-CCCCEEEEecCCCcEEEEEccCcceeeeecc---
Q 014475           46 FLA-SSQLREQPSASSGSILYWSWSKPQVEVKSLPAEPIKPIAAN-SHGTYIAGGGQSGDIYMWEVASGRLLKKWHA---  120 (424)
Q Consensus        46 ~~~-~~~~l~~~~~~~g~i~vwd~~~~~~~~~~~~~~~v~~~~~s-~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~---  120 (424)
                      |.+ ++.++++-... +.|..|+..+++........  ...+++. +++.++++ ... .+.++|+.+++.......   
T Consensus         7 ~d~~~g~l~~~D~~~-~~i~~~~~~~~~~~~~~~~~--~~G~~~~~~~g~l~v~-~~~-~~~~~d~~~g~~~~~~~~~~~   81 (246)
T PF08450_consen    7 WDPRDGRLYWVDIPG-GRIYRVDPDTGEVEVIDLPG--PNGMAFDRPDGRLYVA-DSG-GIAVVDPDTGKVTVLADLPDG   81 (246)
T ss_dssp             EETTTTEEEEEETTT-TEEEEEETTTTEEEEEESSS--EEEEEEECTTSEEEEE-ETT-CEEEEETTTTEEEEEEEEETT
T ss_pred             EECCCCEEEEEEcCC-CEEEEEECCCCeEEEEecCC--CceEEEEccCCEEEEE-EcC-ceEEEecCCCcEEEEeeccCC
Confidence            776 55555554444 99999999887765543333  7777777 67655555 444 466669988855433332   


Q ss_pred             --ccCCeEEEEEccCCcEEEEeeCC--------CcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCcee
Q 014475          121 --HYRAVTCLVFSEDGSFLISGSED--------GCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSA  190 (424)
Q Consensus       121 --~~~~i~~~~~~~~~~~l~s~~~d--------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  190 (424)
                        .....+.+++.|+|++.++....        |.|..++...             .+......-...+.++|++++  +
T Consensus        82 ~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~~-------------~~~~~~~~~~~pNGi~~s~dg--~  146 (246)
T PF08450_consen   82 GVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPDG-------------KVTVVADGLGFPNGIAFSPDG--K  146 (246)
T ss_dssp             CSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETTS-------------EEEEEEEEESSEEEEEEETTS--S
T ss_pred             CcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCCC-------------eEEEEecCcccccceEECCcc--h
Confidence              34568899999999977776543        4566666631             122222234456889999998  5


Q ss_pred             EE-EEEeCCCcEEEEecCCCce----eeee-e--cC-cceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCcee
Q 014475          191 TI-VSASEDRTCKVWSLLKGRL----LRNI-V--FP-SVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHI  261 (424)
Q Consensus       191 ~l-~~~~~d~~v~iwd~~~~~~----~~~~-~--~~-~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~  261 (424)
                      .| ++-+..+.|..+++.....    ...+ .  .. +..-.+++..+|++.++....+.|.+++.+.          +.
T Consensus       147 ~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~G----------~~  216 (246)
T PF08450_consen  147 TLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPDG----------KL  216 (246)
T ss_dssp             EEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETTS----------CE
T ss_pred             heeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCCc----------cE
Confidence            54 5667788899999863222    1122 1  11 2478899999999888888899999999884          34


Q ss_pred             eeeecccCcCeEEEEec-C--CCEEEEe
Q 014475          262 IGSLSDHSKAVTCLAYS-T--GDLLISG  286 (424)
Q Consensus       262 ~~~~~~~~~~i~~~~~~-~--~~~l~t~  286 (424)
                      +..+......+++++|. +  +.+++|.
T Consensus       217 ~~~i~~p~~~~t~~~fgg~~~~~L~vTt  244 (246)
T PF08450_consen  217 LREIELPVPRPTNCAFGGPDGKTLYVTT  244 (246)
T ss_dssp             EEEEE-SSSSEEEEEEESTTSSEEEEEE
T ss_pred             EEEEcCCCCCEEEEEEECCCCCEEEEEe
Confidence            44444444588999994 3  4455544

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=98.96  E-value=5.4e-07  Score=82.74  Aligned_cols=254  Identities=12%  Similarity=0.076  Sum_probs=152.2

Q ss_pred             EEeecCCCCCceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCceeeeecCCCCe
Q 014475            4 LIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSLPAEPI   83 (424)
Q Consensus         4 ~lat~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~~~~~~~v   83 (424)
                      .++.++ .+|.+.-+|.++|+.+-+.+...    .+.+-.  ...++. ++++..+ |.+..+|.++++..+......+.
T Consensus       122 ~v~v~~-~~g~l~ald~~tG~~~W~~~~~~----~~~ssP--~v~~~~-v~v~~~~-g~l~ald~~tG~~~W~~~~~~~~  192 (394)
T PRK11138        122 KVYIGS-EKGQVYALNAEDGEVAWQTKVAG----EALSRP--VVSDGL-VLVHTSN-GMLQALNESDGAVKWTVNLDVPS  192 (394)
T ss_pred             EEEEEc-CCCEEEEEECCCCCCcccccCCC----ceecCC--EEECCE-EEEECCC-CEEEEEEccCCCEeeeecCCCCc
Confidence            345566 78999999999999887665332    122211  222444 4445555 89999999999887765433221


Q ss_pred             eEE--EECC--CCCEEEEecCCCcEEEEEccCcceeeeeccccC-------CeEEEEEcc--CCcEEEEeeCCCcEEEEe
Q 014475           84 KPI--AANS--HGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYR-------AVTCLVFSE--DGSFLISGSEDGCVRIWS  150 (424)
Q Consensus        84 ~~~--~~s~--~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~-------~i~~~~~~~--~~~~l~s~~~dg~i~iwd  150 (424)
                      ..+  .-+|  .+..++.++.+|.+..+|.++|+.+...+....       ....+.-+|  .+..++.++.+|.+..+|
T Consensus       193 ~~~~~~~sP~v~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald  272 (394)
T PRK11138        193 LTLRGESAPATAFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALD  272 (394)
T ss_pred             ccccCCCCCEEECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEE
Confidence            111  0122  233566677889999999999987655431110       011111222  245677777899999999


Q ss_pred             CCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeeec-C-cceeEEEECC
Q 014475          151 LLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVF-P-SVIDAIALDP  228 (424)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~-~-~~i~~~~~~~  228 (424)
                      ..++....+         ..+.    ....+.  ..+  ..++.++.+|.+..+|..+++.+..... . ....+...  
T Consensus       273 ~~tG~~~W~---------~~~~----~~~~~~--~~~--~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v--  333 (394)
T PRK11138        273 LRSGQIVWK---------REYG----SVNDFA--VDG--GRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVL--  333 (394)
T ss_pred             CCCCCEEEe---------ecCC----CccCcE--EEC--CEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEE--
Confidence            977532211         1111    111122  223  5777788899999999999987654431 1 11111111  


Q ss_pred             CCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC---CCEEEEeCCCCcEEEEeC
Q 014475          229 AEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST---GDLLISGSEDGMVRVWDP  297 (424)
Q Consensus       229 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~~l~t~~~dg~i~iwd~  297 (424)
                      .+..+++++.+|.++..|..+++         .+....-....+.+   +|   ++.|+.++.||.|..++.
T Consensus       334 ~~g~l~v~~~~G~l~~ld~~tG~---------~~~~~~~~~~~~~s---~P~~~~~~l~v~t~~G~l~~~~~  393 (394)
T PRK11138        334 YNGYLVVGDSEGYLHWINREDGR---------FVAQQKVDSSGFLS---EPVVADDKLLIQARDGTVYAITR  393 (394)
T ss_pred             ECCEEEEEeCCCEEEEEECCCCC---------EEEEEEcCCCccee---CCEEECCEEEEEeCCceEEEEeC
Confidence            36678889999999999998874         23333222222221   23   678888999999988764

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=98.89  E-value=5e-06  Score=78.30  Aligned_cols=287  Identities=16%  Similarity=0.185  Sum_probs=159.7

Q ss_pred             EEeecCCCCCceEEEeCCCCceEEEeeCCCCCC---CceEEecceeec-CCCccccCCCCceeEEEEECCCCceeeeecC
Q 014475            4 LIASSSVADTGIGCWDLESGAEQLRYKSCASPP---HGLACVGQRFLA-SSQLREQPSASSGSILYWSWSKPQVEVKSLP   79 (424)
Q Consensus         4 ~lat~~~~dg~i~vwd~~~~~~~~~~~~~~~~~---~~v~~~~~~~~~-~~~~l~~~~~~~g~i~vwd~~~~~~~~~~~~   79 (424)
                      .+..++ .++.|.-.|.++|+.+-+++......   ..+..-.  ... ++..++.+..+ |.|.-+|.++++...+...
T Consensus        63 ~vy~~~-~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g--~~~~~~~~V~v~~~~-g~v~AlD~~TG~~~W~~~~  138 (488)
T cd00216          63 DMYFTT-SHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRG--VAYWDPRKVFFGTFD-GRLVALDAETGKQVWKFGN  138 (488)
T ss_pred             EEEEeC-CCCcEEEEECCCChhhceeCCCCCccccccccccCC--cEEccCCeEEEecCC-CeEEEEECCCCCEeeeecC
Confidence            455666 78999999999999887665432200   0011000  111 22556666665 9999999999998877654


Q ss_pred             CCCe---eEEEECC--CCCEEEEec---------CCCcEEEEEccCcceeeeeccccCC--------------------e
Q 014475           80 AEPI---KPIAANS--HGTYIAGGG---------QSGDIYMWEVASGRLLKKWHAHYRA--------------------V  125 (424)
Q Consensus        80 ~~~v---~~~~~s~--~~~~l~~~~---------~dg~v~iwd~~~~~~~~~~~~~~~~--------------------i  125 (424)
                      ...+   ..+.-+|  .+..++.++         .+|.+..+|..+|+.+..++.....                    +
T Consensus       139 ~~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~v  218 (488)
T cd00216         139 NDQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTS  218 (488)
T ss_pred             CCCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCCc
Confidence            3331   1111122  124455553         3678999999999888766432110                    1


Q ss_pred             -EEEEEccCCcEEEEeeCCC------------------cEEEEeCCcccchhcccccccceEEeecCCcCce-eEEEEEE
Q 014475          126 -TCLVFSEDGSFLISGSEDG------------------CVRIWSLLTVFEECESQRASHLYLHSFTGHTLRI-TDIVIGY  185 (424)
Q Consensus       126 -~~~~~~~~~~~l~s~~~dg------------------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i-~~~~~~~  185 (424)
                       ....+.+.+..++.++.++                  .|.-+|..++...-....... ....+.....++ ..+. .-
T Consensus       219 w~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~-~~~~~~~~s~p~~~~~~-~~  296 (488)
T cd00216         219 WASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPH-DLWDYDGPNQPSLADIK-PK  296 (488)
T ss_pred             cCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCC-CCcccccCCCCeEEecc-cc
Confidence             1234444456777776665                  688888877543222110000 000001111111 0110 01


Q ss_pred             cCc-eeEEEEEeCCCcEEEEecCCCceeeeeecCcceeEEEECCCCCEEEEE------------------eCCCcEEEEE
Q 014475          186 GGV-SATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAG------------------SRDGSIYIAA  246 (424)
Q Consensus       186 ~~~-~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~------------------~~dg~i~i~d  246 (424)
                      ++. ...++.++.+|.+...|.++|+.+......  ...+..+|  ..++++                  ..+|.+.-.|
T Consensus       297 ~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~--~~~~~~~~--~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD  372 (488)
T cd00216         297 DGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEV--EQPMAYDP--GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALD  372 (488)
T ss_pred             CCCeeEEEEEECCCceEEEEECCCCcEeeEeEee--ccccccCC--ceEEEccccccccCcccccCCCCCCCceEEEEEe
Confidence            121 136788889999999999999988876532  11233344  333332                  2356777788


Q ss_pred             cCCCCCCCCCcCceeeeeecccC------cCe--EEEEecCCCEEEEeCCCCcEEEEeCCCCcEEEEEec
Q 014475          247 LNAESPSTSSYGMHIIGSLSDHS------KAV--TCLAYSTGDLLISGSEDGMVRVWDPITHNIVRMFRL  308 (424)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~------~~i--~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~  308 (424)
                      ..+++......       ...+.      .+.  ..+... ++.++.++.||.|+.+|.++|+.+.+++.
T Consensus       373 ~~tG~~~W~~~-------~~~~~~~~~~g~~~~~~~~~~~-g~~v~~g~~dG~l~ald~~tG~~lW~~~~  434 (488)
T cd00216         373 PKTGKVVWEKR-------EGTIRDSWNIGFPHWGGSLATA-GNLVFAGAADGYFRAFDATTGKELWKFRT  434 (488)
T ss_pred             CCCCcEeeEee-------CCccccccccCCcccCcceEec-CCeEEEECCCCeEEEEECCCCceeeEEEC
Confidence            87775322110       10000      111  112222 67888999999999999999999998875

The alignment model contains an 8-bladed beta-propeller.

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.88  E-value=8.3e-08  Score=89.54  Aligned_cols=106  Identities=16%  Similarity=0.187  Sum_probs=84.8

Q ss_pred             eecCCCccccCCC---CceeEEEEECCCCceeeeecCCCCeeEEEECCCCCEEEEecCCCcEEEEEccCcceeeeecccc
Q 014475           46 FLASSQLREQPSA---SSGSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHY  122 (424)
Q Consensus        46 ~~~~~~~l~~~~~---~~g~i~vwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~  122 (424)
                      |+|...++++++-   ..|.|.|+- +++++.....-+-.+++++|+|..-.|+.|-.-|.+.+|...+.+.......|.
T Consensus        23 WHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~~th~  101 (1416)
T KOG3617|consen   23 WHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVTYPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVVETHP  101 (1416)
T ss_pred             cCCCCceeEEEEecCCCCceEEEEe-cCCCCCcccccceehhhhccChHHHHHhhccccceeEEEecCCceeeeeccCCC
Confidence            7788777776642   238888885 344433222234456789999999999999999999999988777766677899


Q ss_pred             CCeEEEEEccCCcEEEEeeCCCcEEEEeCC
Q 014475          123 RAVTCLVFSEDGSFLISGSEDGCVRIWSLL  152 (424)
Q Consensus       123 ~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~  152 (424)
                      .+|..+.|+++|..++++..-|.+.+|...
T Consensus       102 a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d  131 (1416)
T KOG3617|consen  102 APIQGLDWSHDGTVLMTLDNPGSVHLWRYD  131 (1416)
T ss_pred             CCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence            999999999999999999999999999875

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.87  E-value=7.2e-08  Score=90.62  Aligned_cols=184  Identities=20%  Similarity=0.307  Sum_probs=140.9

Q ss_pred             CCCEEEEecCCCcEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEe
Q 014475           91 HGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHS  170 (424)
Q Consensus        91 ~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  170 (424)
                      ++..++.|+....+..+|+++.+..+......+.|.-++.  +++.+.+|...|+|.+-|.+           ....+++
T Consensus       146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~--Nnr~lf~G~t~G~V~LrD~~-----------s~~~iht  212 (1118)
T KOG1275|consen  146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY--NNRNLFCGDTRGTVFLRDPN-----------SFETIHT  212 (1118)
T ss_pred             CCcceeecchhhheeeeecccceeeeeeeccCCceEEEEe--cCcEEEeecccceEEeecCC-----------cCceeee
Confidence            3456777777778999999998888777655555666665  58899999999999999994           4667899


Q ss_pred             ecCCcCceeEEEEEEcCceeEEEEEeC---------CCcEEEEecCCCceeeeeecCcceeEEEECCC-CCEEEEEeCCC
Q 014475          171 FTGHTLRITDIVIGYGGVSATIVSASE---------DRTCKVWSLLKGRLLRNIVFPSVIDAIALDPA-EHVFYAGSRDG  240 (424)
Q Consensus       171 ~~~~~~~i~~~~~~~~~~~~~l~~~~~---------d~~v~iwd~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg  240 (424)
                      +..|.+.|.++..  .|  +.|++++.         |..|++||++..+.+..+..+....-+.|+|. ...+++.+..|
T Consensus       213 ~~aHs~siSDfDv--~G--NlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P~flrf~Psl~t~~~V~S~sG  288 (1118)
T KOG1275|consen  213 FDAHSGSISDFDV--QG--NLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGPQFLRFHPSLTTRLAVTSQSG  288 (1118)
T ss_pred             eeccccceeeeec--cC--CeEEEeecccccccccccchhhhhhhhhhhccCCcccccCchhhhhcccccceEEEEeccc
Confidence            9999999987655  34  67888775         56789999999888888876666677888884 56788899999


Q ss_pred             cEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEe
Q 014475          241 SIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWD  296 (424)
Q Consensus       241 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd  296 (424)
                      ...+-|..+-....     .-+.........+..+.+++ ++.++.|..+|.|.+|.
T Consensus       289 q~q~vd~~~lsNP~-----~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa  340 (1118)
T KOG1275|consen  289 QFQFVDTATLSNPP-----AGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA  340 (1118)
T ss_pred             ceeeccccccCCCc-----cceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence            99999843322100     11222223345589999999 99999999999999998

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=98.86  E-value=1.4e-06  Score=84.85  Aligned_cols=234  Identities=13%  Similarity=0.106  Sum_probs=150.1

Q ss_pred             CceEEecceeecCCCccccCCCCceeEEEEECCCCceeeeecCCCCeeEEEECCCCCEEEEecCCCcEEEEEc----cC-
Q 014475           37 HGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEV----AS-  111 (424)
Q Consensus        37 ~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~----~~-  111 (424)
                      ..|.++.  |..+...++.+... |.|.+-|.++........-...|.+++||||+..++..+..+++.+-.-    -. 
T Consensus        69 ~~i~s~~--fl~d~~~i~v~~~~-G~iilvd~et~~~eivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E  145 (1265)
T KOG1920|consen   69 DEIVSVQ--FLADTNSICVITAL-GDIILVDPETLELEIVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAE  145 (1265)
T ss_pred             cceEEEE--EecccceEEEEecC-CcEEEEcccccceeeeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhc
Confidence            5677777  99999888888887 9999999888888777778899999999999999999888777766432    00 


Q ss_pred             ------------------cceeeeeccc---------------------cCCeEEEEEccCCcEEEEe-----eCCCcEE
Q 014475          112 ------------------GRLLKKWHAH---------------------YRAVTCLVFSEDGSFLISG-----SEDGCVR  147 (424)
Q Consensus       112 ------------------~~~~~~~~~~---------------------~~~i~~~~~~~~~~~l~s~-----~~dg~i~  147 (424)
                                        |+....+++.                     .+.=+.++|--||+++++.     .....|+
T Consensus       146 ~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~Rkir  225 (1265)
T KOG1920|consen  146 KPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIR  225 (1265)
T ss_pred             cccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEE
Confidence                              0111112110                     1112358999999999873     2237899


Q ss_pred             EEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEe---CCCcEEEEecCCCceeeee----ecC-c
Q 014475          148 IWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSAS---EDRTCKVWSLLKGRLLRNI----VFP-S  219 (424)
Q Consensus       148 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~---~d~~v~iwd~~~~~~~~~~----~~~-~  219 (424)
                      +||-+. .-.           ..-....+.-.+++|-|.|  ..+++-.   .|+.|.++.- +|-....+    ..+ .
T Consensus       226 V~drEg-~Ln-----------s~se~~~~l~~~LsWkPsg--s~iA~iq~~~sd~~IvffEr-NGL~hg~f~l~~p~de~  290 (1265)
T KOG1920|consen  226 VYDREG-ALN-----------STSEPVEGLQHSLSWKPSG--SLIAAIQCKTSDSDIVFFER-NGLRHGEFVLPFPLDEK  290 (1265)
T ss_pred             Eecccc-hhh-----------cccCcccccccceeecCCC--CeEeeeeecCCCCcEEEEec-CCccccccccCCccccc
Confidence            999852 110           0111122233467888877  6776543   4557888874 34333333    222 3


Q ss_pred             ceeEEEECCCCCEEEE---EeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC--CCEEEEeCCCCcEEE
Q 014475          220 VIDAIALDPAEHVFYA---GSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST--GDLLISGSEDGMVRV  294 (424)
Q Consensus       220 ~i~~~~~~~~~~~l~~---~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~l~t~~~dg~i~i  294 (424)
                      .+..++|+.++..|++   ......|++|-+.+-.       |-..+.+.-.....  +.|+|  ...+..-..+|...+
T Consensus       291 ~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~Nyh-------WYLKq~l~~~~~~~--~~W~p~~~~~L~v~~~sG~~~v  361 (1265)
T KOG1920|consen  291 EVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYH-------WYLKQELQFSQKAL--LMWDPVTEKTLHVLRESGQRLV  361 (1265)
T ss_pred             chheeeecCCCCceeeeecccccceEEEEEecCeE-------EEEEEEEecccccc--ccccCCCceeEEEEecCCcEEE
Confidence            3899999999999988   4444559999998754       33333333322222  77888  333333335666555


Q ss_pred             EeC
Q 014475          295 WDP  297 (424)
Q Consensus       295 wd~  297 (424)
                      +|.
T Consensus       362 ~~~  364 (1265)
T KOG1920|consen  362 RDF  364 (1265)
T ss_pred             EEE
Confidence            553

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.85  E-value=5.8e-09  Score=60.46  Aligned_cols=39  Identities=23%  Similarity=0.182  Sum_probs=37.1

Q ss_pred             CcEEEEEeccCCCeeEEEEEecCceeeeccCCCceeecc
Q 014475          300 HNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSR  338 (424)
Q Consensus       300 ~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~d~~i~iw~  338 (424)
                      ++++.++.+|.++|++++|+|++.+|++++.|+.|++||
T Consensus         1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            468899999999999999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.84  E-value=9e-06  Score=69.08  Aligned_cols=228  Identities=16%  Similarity=0.158  Sum_probs=138.9

Q ss_pred             eec-CCCccccCCCCceeEEEEECCCCceeeeecCCC---CeeEEEECCCCCEEEEec-----CCCcEEEEEcc-Cccee
Q 014475           46 FLA-SSQLREQPSASSGSILYWSWSKPQVEVKSLPAE---PIKPIAANSHGTYIAGGG-----QSGDIYMWEVA-SGRLL  115 (424)
Q Consensus        46 ~~~-~~~~l~~~~~~~g~i~vwd~~~~~~~~~~~~~~---~v~~~~~s~~~~~l~~~~-----~dg~v~iwd~~-~~~~~  115 (424)
                      .+| ....++.+-.-.....+||..+++.........   ---.-.||+||++|++.-     ..|.|-|||.. +.+.+
T Consensus        12 ~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri   91 (305)
T PF07433_consen   12 AHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRI   91 (305)
T ss_pred             eCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEE
Confidence            666 344444554444578899998887664433221   122567999999999863     35789999998 66778


Q ss_pred             eeeccccCCeEEEEEccCCcEEEEeeC-------CCcEEEEeCCcccchhccc-ccccceEE--ee--cCCcCceeEEEE
Q 014475          116 KKWHAHYRAVTCLVFSEDGSFLISGSE-------DGCVRIWSLLTVFEECESQ-RASHLYLH--SF--TGHTLRITDIVI  183 (424)
Q Consensus       116 ~~~~~~~~~i~~~~~~~~~~~l~s~~~-------dg~i~iwd~~~~~~~~~~~-~~~~~~~~--~~--~~~~~~i~~~~~  183 (424)
                      .++..|.-....+.+.||++.|+++-.       .|..++ |+.++....... ......+.  .+  .-|...|..+++
T Consensus        92 ~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kL-Nl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~  170 (305)
T PF07433_consen   92 GEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKL-NLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAV  170 (305)
T ss_pred             eEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceec-ChhhcCCceEEEecCCCceeeeeecCccccccceeeEEe
Confidence            888888877888999999988877621       122222 333322211111 12222222  23  347788999999


Q ss_pred             EEcCceeEEEEEeCCC-------cEEEEecCCCceeeeee--------cCcceeEEEECCCCCEEEEEe-CCCcEEEEEc
Q 014475          184 GYGGVSATIVSASEDR-------TCKVWSLLKGRLLRNIV--------FPSVIDAIALDPAEHVFYAGS-RDGSIYIAAL  247 (424)
Q Consensus       184 ~~~~~~~~l~~~~~d~-------~v~iwd~~~~~~~~~~~--------~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~  247 (424)
                      ..++  ..++..-..|       .|-+++.  ++.+..+.        ....+-+|++++++..+++.+ ..+.+.+||.
T Consensus       171 ~~~G--~V~~a~Q~qg~~~~~~PLva~~~~--g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~  246 (305)
T PF07433_consen  171 DGDG--TVAFAMQYQGDPGDAPPLVALHRR--GGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDA  246 (305)
T ss_pred             cCCC--cEEEEEecCCCCCccCCeEEEEcC--CCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEEC
Confidence            8886  3433332222       1333332  33233222        346789999999998887665 5678999999


Q ss_pred             CCCCCCCCCcCceeeeeecccCcCeEEEEecCCCEEEEeCCC
Q 014475          248 NAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTGDLLISGSED  289 (424)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~t~~~d  289 (424)
                      .++.         .+...  .-..+..++..++.++++.+..
T Consensus       247 ~tg~---------~~~~~--~l~D~cGva~~~~~f~~ssG~G  277 (305)
T PF07433_consen  247 ATGR---------LLGSV--PLPDACGVAPTDDGFLVSSGQG  277 (305)
T ss_pred             CCCC---------Eeecc--ccCceeeeeecCCceEEeCCCc
Confidence            9874         22222  2234566666665566666543

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.84  E-value=2.8e-09  Score=99.44  Aligned_cols=210  Identities=17%  Similarity=0.203  Sum_probs=148.4

Q ss_pred             CCCCeeEEEECCCCCEEEEecCCCcEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEeeCCC--cEEEEeCCcccc
Q 014475           79 PAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDG--CVRIWSLLTVFE  156 (424)
Q Consensus        79 ~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg--~i~iwd~~~~~~  156 (424)
                      +....+|++|+-+.++|++|+..|.|++|++.+|.......+|..+|+.+.-+.+|..+++.+.-.  -..+|++...  
T Consensus      1100 ~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~s~-- 1177 (1516)
T KOG1832|consen 1100 ETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDASST-- 1177 (1516)
T ss_pred             cccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHHhccccc--
Confidence            567889999999999999999999999999999999999999999999999999998887765543  3678998541  


Q ss_pred             hhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeee-----cCcceeEEEECCCCC
Q 014475          157 ECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-----FPSVIDAIALDPAEH  231 (424)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~-----~~~~i~~~~~~~~~~  231 (424)
                              ....+.+.    .-.++.|+...  ..-+.|+......+||+.++.++.++-     ....-++..|+|+..
T Consensus      1178 --------~~~~Hsf~----ed~~vkFsn~~--q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~ 1243 (1516)
T KOG1832|consen 1178 --------GGPRHSFD----EDKAVKFSNSL--QFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDT 1243 (1516)
T ss_pred             --------cCcccccc----ccceeehhhhH--HHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcc
Confidence                    12223332    23456676654  344555555679999999998777632     223347888999988


Q ss_pred             EEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCCCcEEEEEeccC
Q 014475          232 VFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAK  310 (424)
Q Consensus       232 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~  310 (424)
                      +++   +||  .+||.+...         .+..+......+ .=.|+| |..++.-++     |||+++.+.++....-.
T Consensus      1244 LIl---ndG--vLWDvR~~~---------aIh~FD~ft~~~-~G~FHP~g~eVIINSE-----IwD~RTF~lLh~VP~Ld 1303 (1516)
T KOG1832|consen 1244 LIL---NDG--VLWDVRIPE---------AIHRFDQFTDYG-GGGFHPSGNEVIINSE-----IWDMRTFKLLHSVPSLD 1303 (1516)
T ss_pred             eEe---eCc--eeeeeccHH---------HHhhhhhheecc-cccccCCCceEEeech-----hhhhHHHHHHhcCcccc
Confidence            776   344  579998863         233332222111 124788 887777664     89999988887765322


Q ss_pred             CCeeEEEEEecCceee
Q 014475          311 GPVNNILVVRRPLYLN  326 (424)
Q Consensus       311 ~~v~~l~~s~~~~~l~  326 (424)
                        -..+.|+..|..+.
T Consensus      1304 --qc~VtFNstG~VmY 1317 (1516)
T KOG1832|consen 1304 --QCAVTFNSTGDVMY 1317 (1516)
T ss_pred             --ceEEEeccCccchh
Confidence              25566776665543

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.83  E-value=3.8e-07  Score=78.08  Aligned_cols=243  Identities=11%  Similarity=0.083  Sum_probs=141.7

Q ss_pred             eecCCCCeeEEEECCCCC-EEEEecCCCcEEEEEccCcceeeeeccccCCeEEEEEccCC-cEEEEeeCCCcEEEEeCCc
Q 014475           76 KSLPAEPIKPIAANSHGT-YIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDG-SFLISGSEDGCVRIWSLLT  153 (424)
Q Consensus        76 ~~~~~~~v~~~~~s~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~s~~~dg~i~iwd~~~  153 (424)
                      ...+...|..++|||..+ ++..++.+..|+|.|+++...+..+..+ ..+++++|.-|. +++..|..+|.|.+||++.
T Consensus       189 lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~  267 (463)
T KOG1645|consen  189 LPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQ  267 (463)
T ss_pred             ccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceEEEEEccC
Confidence            344567899999999766 7888899999999999999999888877 789999998755 4567778899999999987


Q ss_pred             ccchhcccccccceEEeecCCcCceeEE------EEEEcCceeEEEEEeCCCcEEEEecCC----CceeeeeecCcceeE
Q 014475          154 VFEECESQRASHLYLHSFTGHTLRITDI------VIGYGGVSATIVSASEDRTCKVWSLLK----GRLLRNIVFPSVIDA  223 (424)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~------~~~~~~~~~~l~~~~~d~~v~iwd~~~----~~~~~~~~~~~~i~~  223 (424)
                      ..........        .-...+|..+      ...+.+  .+++....+  +..|++.-    ..++..+..++...+
T Consensus       268 ~~~~~~e~~a--------~~t~~pv~~i~~~~~n~~f~~g--glLv~~lt~--l~f~ei~~s~~~~p~vlele~pG~cis  335 (463)
T KOG1645|consen  268 PEGPLMELVA--------NVTINPVHKIAPVQPNKIFTSG--GLLVFALTV--LQFYEIVFSAECLPCVLELEPPGICIS  335 (463)
T ss_pred             CCchHhhhhh--------hhccCcceeecccCcccccccc--ceEEeeehh--hhhhhhhccccCCCcccccCCCcceee
Confidence            4332211110        0011122222      222333  344444433  55666532    223334445667777


Q ss_pred             EEECCCCCEEEEEeCCC----cEE---E-EEcCCCCCCCCCcCceeeeeeccc-CcC---e--EEEEec-C-CCEE-EEe
Q 014475          224 IALDPAEHVFYAGSRDG----SIY---I-AALNAESPSTSSYGMHIIGSLSDH-SKA---V--TCLAYS-T-GDLL-ISG  286 (424)
Q Consensus       224 ~~~~~~~~~l~~~~~dg----~i~---i-~d~~~~~~~~~~~~~~~~~~~~~~-~~~---i--~~~~~~-~-~~~l-~t~  286 (424)
                      ++.++..+.++......    .++   . -|...+.        .....-..+ ..+   +  +..-+. + .+++ .++
T Consensus       336 mqy~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~--------pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~g  407 (463)
T KOG1645|consen  336 MQYHGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGF--------PVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVG  407 (463)
T ss_pred             eeecCccceEEEEecCCCCCccceeeeeeeccccCc--------eeeeecccccCCcccccccccceeccccccEEEEec
Confidence            77777555554443221    011   1 0111111        111111111 000   0  011122 2 3444 445


Q ss_pred             CCCCcEEEEeCCCCcEEEEEeccCCCeeEEEEEe-cCceeeeccCCCceeeccCC
Q 014475          287 SEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVR-RPLYLNLGSFSNPHTSSRRH  340 (424)
Q Consensus       287 ~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~-~~~~l~~~~~d~~i~iw~~~  340 (424)
                      +.-+.+.+||+.+++.++++.. ..+|..++... ++.-++..-.|..++|++.+
T Consensus       408 d~tn~lil~D~~s~evvQ~l~~-~epv~Dicp~~~n~~syLa~LTd~~v~Iyk~e  461 (463)
T KOG1645|consen  408 DSTNELILQDPHSFEVVQTLAL-SEPVLDICPNDTNGSSYLALLTDDRVHIYKNE  461 (463)
T ss_pred             CCcceeEEeccchhheeeeccc-CcceeecceeecCCcchhhheecceEEEEecC
Confidence            5667899999999999999974 47888887664 34433344456667777644

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.82  E-value=7.5e-06  Score=73.86  Aligned_cols=259  Identities=13%  Similarity=0.115  Sum_probs=140.9

Q ss_pred             eeEEEEECCCCceeeeecCCCCeeEEEECCCCCEEEEecCCCcEEEEEccCcceeeee-cc---------------c-cC
Q 014475           61 GSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKW-HA---------------H-YR  123 (424)
Q Consensus        61 g~i~vwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~-~~---------------~-~~  123 (424)
                      +.+.++|+++++..........+....|||+|+.+|... ++.|.+++..++...+.- .+               - -+
T Consensus        23 ~~y~i~d~~~~~~~~l~~~~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~  101 (353)
T PF00930_consen   23 GDYYIYDIETGEITPLTPPPPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFD  101 (353)
T ss_dssp             EEEEEEETTTTEEEESS-EETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSS
T ss_pred             eeEEEEecCCCceEECcCCccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccceeccccccc
Confidence            789999999977655444467899999999999999875 578999998777443322 11               0 12


Q ss_pred             CeEEEEEccCCcEEEEeeCC-CcEEEEeCCcccch------hcc-------c-------------ccccceEEee---cC
Q 014475          124 AVTCLVFSEDGSFLISGSED-GCVRIWSLLTVFEE------CES-------Q-------------RASHLYLHSF---TG  173 (424)
Q Consensus       124 ~i~~~~~~~~~~~l~s~~~d-g~i~iwd~~~~~~~------~~~-------~-------------~~~~~~~~~~---~~  173 (424)
                      .-..+-|+||+++|+....| ..|..+.+......      ...       .             ..+...+...   ..
T Consensus       102 ~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~  181 (353)
T PF00930_consen  102 RRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNP  181 (353)
T ss_dssp             SSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHHT
T ss_pred             cccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCC
Confidence            33568899999998876543 33333332111000      000       0             0000011111   22


Q ss_pred             CcCceeEEEEEEcCceeEEEEEeCCC---cEEEEecCCCceeeeee--cCcc---eeEEEEC-CCC-CEEEEEeCCCcEE
Q 014475          174 HTLRITDIVIGYGGVSATIVSASEDR---TCKVWSLLKGRLLRNIV--FPSV---IDAIALD-PAE-HVFYAGSRDGSIY  243 (424)
Q Consensus       174 ~~~~i~~~~~~~~~~~~~l~~~~~d~---~v~iwd~~~~~~~~~~~--~~~~---i~~~~~~-~~~-~~l~~~~~dg~i~  243 (424)
                      ...-+..+.|.+++..-.+.....+.   .+.++|..+++......  .+..   .....+. +++ .++.....+|--+
T Consensus       182 ~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~h  261 (353)
T PF00930_consen  182 QDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRH  261 (353)
T ss_dssp             SSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEE
T ss_pred             CccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcE
Confidence            34457778888887211223333333   36677887765543333  2222   2355554 544 5555566777555


Q ss_pred             EEEcCCCCCCCCCcCceeeeeecccCcCeEE-EEecC--CCEEEEeCCCC----cEEEEeCCCCcEEEEEeccCCCeeEE
Q 014475          244 IAALNAESPSTSSYGMHIIGSLSDHSKAVTC-LAYST--GDLLISGSEDG----MVRVWDPITHNIVRMFRLAKGPVNNI  316 (424)
Q Consensus       244 i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~--~~~l~t~~~dg----~i~iwd~~~~~~~~~~~~~~~~v~~l  316 (424)
                      +|-++...        .....+....-.|+. +.+++  +.++.++..++    .|..-++..+..+..+....+.-..+
T Consensus       262 ly~~~~~~--------~~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~~~~~~~  333 (353)
T PF00930_consen  262 LYLYDLDG--------GKPRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCEDGDHYSA  333 (353)
T ss_dssp             EEEEETTS--------SEEEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTTSSTTEEE
T ss_pred             EEEEcccc--------cceeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCCCCCceEE
Confidence            54444332        223345445566755 56677  44555665432    45555666345566666544444699


Q ss_pred             EEEecCceeeec
Q 014475          317 LVVRRPLYLNLG  328 (424)
Q Consensus       317 ~~s~~~~~l~~~  328 (424)
                      .|||++++++..
T Consensus       334 ~~Spdg~y~v~~  345 (353)
T PF00930_consen  334 SFSPDGKYYVDT  345 (353)
T ss_dssp             EE-TTSSEEEEE
T ss_pred             EECCCCCEEEEE
Confidence            999999988754

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.81  E-value=1.5e-08  Score=58.65  Aligned_cols=39  Identities=36%  Similarity=0.888  Sum_probs=36.6

Q ss_pred             cceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEe
Q 014475          112 GRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWS  150 (424)
Q Consensus       112 ~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd  150 (424)
                      ++++.++++|.+.|++++|+|++++|++++.|+.|++||
T Consensus         1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            357888999999999999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>PRK02888 nitrous-oxide reductase; Validated

Probab=98.80  E-value=1.3e-05  Score=74.53  Aligned_cols=304  Identities=10%  Similarity=0.004  Sum_probs=169.5

Q ss_pred             EEeecCCCCCceEEEeCCCCceEEEeeCCCCCC----------CceE---------------Eecc---eeecCCCcccc
Q 014475            4 LIASSSVADTGIGCWDLESGAEQLRYKSCASPP----------HGLA---------------CVGQ---RFLASSQLREQ   55 (424)
Q Consensus         4 ~lat~~~~dg~i~vwd~~~~~~~~~~~~~~~~~----------~~v~---------------~~~~---~~~~~~~~l~~   55 (424)
                      .+.||+ ..|.|+|+-+.+++.++.+.-.....          ..+.               ....   .=..||+++..
T Consensus        68 ~f~SgG-~sG~~~v~G~PSmr~l~~ipvf~~~~~~G~G~~~esk~~l~~~~~~~~~~~gD~HHp~~s~t~g~ydGr~~fi  146 (635)
T PRK02888         68 GFWSGG-HSGEVRILGLPSMRELMRIPVFNRDSATGWGITNESKKVLGEGARGGKYLNGDTHHPHMSFTDGTYDGRYLFI  146 (635)
T ss_pred             EEeeCC-ccceEEEEecCCcceEEEeeeecCCCCcccCCchhHHHHhhccccCCcccCCCcCCCcccccCCccceeEEEE
Confidence            467788 99999999999999998775322100          0010               0000   00124455554


Q ss_pred             CCCCceeEEEEECCCCcee--eeecCCCCeeEEE-------------------ECCCCCEEEEe-cCCCcEEEEEccCcc
Q 014475           56 PSASSGSILYWSWSKPQVE--VKSLPAEPIKPIA-------------------ANSHGTYIAGG-GQSGDIYMWEVASGR  113 (424)
Q Consensus        56 ~~~~~g~i~vwd~~~~~~~--~~~~~~~~v~~~~-------------------~s~~~~~l~~~-~~dg~v~iwd~~~~~  113 (424)
                      -......|-.-+++..+..  ........+..++                   ++|||+.+... -..+.+.+.|.++.+
T Consensus       147 ndk~n~Rvari~l~~~~~~~i~~iPn~~~~Hg~~~~~~p~t~yv~~~~e~~~PlpnDGk~l~~~~ey~~~vSvID~etme  226 (635)
T PRK02888        147 NDKANTRVARIRLDVMKCDKITELPNVQGIHGLRPQKIPRTGYVFCNGEFRIPLPNDGKDLDDPKKYRSLFTAVDAETME  226 (635)
T ss_pred             ecCCCcceEEEECccEeeceeEeCCCccCccccCccccCCccEEEeCcccccccCCCCCEeecccceeEEEEEEECccce
Confidence            4433344444444432211  1111122233333                   34455444222 223557777877766


Q ss_pred             eeeeeccccCCeEEEEEccCCcEEEEeeCCC----cEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCce
Q 014475          114 LLKKWHAHYRAVTCLVFSEDGSFLISGSEDG----CVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVS  189 (424)
Q Consensus       114 ~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  189 (424)
                      ...++.... ....+.++|+++++++.+.+.    .+..-+..+           ...+..+....  +.  .+.+++  
T Consensus       227 V~~qV~Vdg-npd~v~~spdGk~afvTsyNsE~G~tl~em~a~e-----------~d~~vvfni~~--ie--a~vkdG--  288 (635)
T PRK02888        227 VAWQVMVDG-NLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAE-----------RDWVVVFNIAR--IE--EAVKAG--  288 (635)
T ss_pred             EEEEEEeCC-CcccceECCCCCEEEEeccCcccCcceeeecccc-----------CceEEEEchHH--HH--HhhhCC--
Confidence            666654332 446788899999888776321    222222211           11111111100  00  223344  


Q ss_pred             eEEEEEeCCCcEEEEecCC-----CceeeeeecCcceeEEEECCCCCEEEEEe-CCCcEEEEEcCCCCCCCC---CcCce
Q 014475          190 ATIVSASEDRTCKVWSLLK-----GRLLRNIVFPSVIDAIALDPAEHVFYAGS-RDGSIYIAALNAESPSTS---SYGMH  260 (424)
Q Consensus       190 ~~l~~~~~d~~v~iwd~~~-----~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~---~~~~~  260 (424)
                      ++...  .++.|.+.|.++     .+.+..+..+.....+.++|||+++++++ .+.++.++|+........   .....
T Consensus       289 K~~~V--~gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~  366 (635)
T PRK02888        289 KFKTI--GGSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDA  366 (635)
T ss_pred             CEEEE--CCCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccce
Confidence            44333  367899999998     56777788888999999999999988766 488999999988542110   00111


Q ss_pred             eeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCC----------CcEEEEEeccCCCeeEE-----EEEecCce
Q 014475          261 IIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPIT----------HNIVRMFRLAKGPVNNI-----LVVRRPLY  324 (424)
Q Consensus       261 ~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~----------~~~~~~~~~~~~~v~~l-----~~s~~~~~  324 (424)
                      .+.+..- .......+|.+ |+.+.|-.-|..|..||+.+          ...+..+..|-.+-...     .-.|||++
T Consensus       367 vvaevev-GlGPLHTaFDg~G~aytslf~dsqv~kwn~~~a~~~~~g~~~~~v~~k~dV~y~pgh~~~~~g~t~~~dgk~  445 (635)
T PRK02888        367 VVAEPEL-GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEAAIRAYKGEKVDPIVQKLDVHYQPGHNHASMGETKEADGKW  445 (635)
T ss_pred             EEEeecc-CCCcceEEECCCCCEEEeEeecceeEEEehHHHHHHhccccCCcceecccCCCccceeeecCCCcCCCCCCE
Confidence            2233332 23334567888 88888888999999999886          34555555554432222     23588999


Q ss_pred             eeecc
Q 014475          325 LNLGS  329 (424)
Q Consensus       325 l~~~~  329 (424)
                      |++..
T Consensus       446 l~~~n  450 (635)
T PRK02888        446 LVSLN  450 (635)
T ss_pred             EEEcc
Confidence            88864

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.80  E-value=7.4e-08  Score=89.40  Aligned_cols=184  Identities=19%  Similarity=0.263  Sum_probs=136.3

Q ss_pred             cCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcE
Q 014475          122 YRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTC  201 (424)
Q Consensus       122 ~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v  201 (424)
                      ...++|++++  +++|+-|+.+|.|++++...           . + .....|...        +..|.++++|+.||+|
T Consensus        39 ~D~is~~av~--~~~~~~GtH~g~v~~~~~~~-----------~-~-~~~~~~s~~--------~~~Gey~asCS~DGkv   95 (846)
T KOG2066|consen   39 NDAISCCAVH--DKFFALGTHRGAVYLTTCQG-----------N-P-KTNFDHSSS--------ILEGEYVASCSDDGKV   95 (846)
T ss_pred             hhHHHHHHhh--cceeeeccccceEEEEecCC-----------c-c-ccccccccc--------ccCCceEEEecCCCcE
Confidence            3567778887  77999999999999999843           1 1 222334333        3334999999999999


Q ss_pred             EEEecCCCceeeeeecCcceeEEEECCC-----CCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEE
Q 014475          202 KVWSLLKGRLLRNIVFPSVIDAIALDPA-----EHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLA  276 (424)
Q Consensus       202 ~iwd~~~~~~~~~~~~~~~i~~~~~~~~-----~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  276 (424)
                      .|-.+.+.+....+....++.+++++|+     .+.+++|+..| +.++.-+--..       +....+....++|.++.
T Consensus        96 ~I~sl~~~~~~~~~df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgn-------k~~v~l~~~eG~I~~i~  167 (846)
T KOG2066|consen   96 VIGSLFTDDEITQYDFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGN-------KDSVVLSEGEGPIHSIK  167 (846)
T ss_pred             EEeeccCCccceeEecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcC-------ccceeeecCccceEEEE
Confidence            9999999999999999999999999997     57799999888 77776543221       11124556779999999


Q ss_pred             ecCCCEEEEeCCCCcEEEEeCCCCcEEEEEeccCCCe------eEEEEEecCceeeeccCCCceeeccCC
Q 014475          277 YSTGDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPV------NNILVVRRPLYLNLGSFSNPHTSSRRH  340 (424)
Q Consensus       277 ~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~v------~~l~~s~~~~~l~~~~~d~~i~iw~~~  340 (424)
                      |. |+++|-++.+| |++||+.+++.+..++.....+      ..+.|.++. .|+.| ...+|++..++
T Consensus       168 W~-g~lIAWand~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~-~LVIG-W~d~v~i~~I~  233 (846)
T KOG2066|consen  168 WR-GNLIAWANDDG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDED-RLVIG-WGDSVKICSIK  233 (846)
T ss_pred             ec-CcEEEEecCCC-cEEEeccccceeeccCCCCCCCCcccCCCceEecCCC-eEEEe-cCCeEEEEEEe
Confidence            97 89999998887 8999999999888877544332      457777665 44444 34456666665

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.79  E-value=1.8e-05  Score=64.26  Aligned_cols=305  Identities=13%  Similarity=0.069  Sum_probs=167.1

Q ss_pred             EEEeecCCCCCceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCceeeeecCCCC
Q 014475            3 LLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSLPAEP   82 (424)
Q Consensus         3 ~~lat~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~~~~~~~   82 (424)
                      .+++.|+ -.+.+.--|..+|+..-+-.. .   .++.+-+  .. -|+.++.+... |.+++-+..+++..+.....+.
T Consensus        24 T~v~igS-Hs~~~~avd~~sG~~~We~il-g---~RiE~sa--~v-vgdfVV~GCy~-g~lYfl~~~tGs~~w~f~~~~~   94 (354)
T KOG4649|consen   24 TLVVIGS-HSGIVIAVDPQSGNLIWEAIL-G---VRIECSA--IV-VGDFVVLGCYS-GGLYFLCVKTGSQIWNFVILET   94 (354)
T ss_pred             eEEEEec-CCceEEEecCCCCcEEeehhh-C---ceeeeee--EE-ECCEEEEEEcc-CcEEEEEecchhheeeeeehhh
Confidence            4567777 788888889888887744211 1   2233322  22 45668888887 9999999999987777665555


Q ss_pred             eeEE-EECCCCCEEEEecCCCcEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhccc
Q 014475           83 IKPI-AANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQ  161 (424)
Q Consensus        83 v~~~-~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~  161 (424)
                      |.+- ...+++..+..|+.|++.+..|.++..++...+...+...+-+..|-...|..+...|.+.--+.++...     
T Consensus        95 vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sly~a~t~G~vlavt~~~~~~-----  169 (354)
T KOG4649|consen   95 VKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSLYAAITAGAVLAVTKNPYSS-----  169 (354)
T ss_pred             hccceEEcCCCceEEEecCCCcEEEecccccceEEecccCCceeccceecCCCceEEEEeccceEEEEccCCCCc-----
Confidence            5433 3567899999999999999999999998888765555444455556333455555566665555533110     


Q ss_pred             ccccceEEeecCCcCceeE--EEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeeecCcceeE-EEEC-CCCCEEEEEe
Q 014475          162 RASHLYLHSFTGHTLRITD--IVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDA-IALD-PAEHVFYAGS  237 (424)
Q Consensus       162 ~~~~~~~~~~~~~~~~i~~--~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~i~~-~~~~-~~~~~l~~~~  237 (424)
                          ..+. .....++|.+  ++..     ..+..++-||.+.-+| ..|+.+......++|.. -+.+ |..+.+..+.
T Consensus       170 ----~~~w-~~~~~~PiF~splcv~-----~sv~i~~VdG~l~~f~-~sG~qvwr~~t~GpIf~~Pc~s~Ps~q~i~~~~  238 (354)
T KOG4649|consen  170 ----TEFW-AATRFGPIFASPLCVG-----SSVIITTVDGVLTSFD-ESGRQVWRPATKGPIFMEPCESRPSCQQISLEN  238 (354)
T ss_pred             ----ceeh-hhhcCCccccCceecc-----ceEEEEEeccEEEEEc-CCCcEEEeecCCCceecccccCCCcceEEEEec
Confidence                0000 0111222221  1111     3344455566666666 45555555544444321 1111 3333333333


Q ss_pred             CC--------CcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecCCCEEEEeCCCCcEEEEeCCCCcEEEEEecc
Q 014475          238 RD--------GSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTGDLLISGSEDGMVRVWDPITHNIVRMFRLA  309 (424)
Q Consensus       238 ~d--------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~  309 (424)
                      .+        ..-.+|..+.+.......  .+...+.-|+..+.     ...++..++.||.+.|.-.+  +.+..+..|
T Consensus       239 ~~Cf~~~~p~~ghL~w~~~~g~t~~vy~--~p~l~F~~h~~~~S-----~~~ll~~~s~dgkv~il~~~--~sl~~~~s~  309 (354)
T KOG4649|consen  239 ENCFCAPLPIAGHLLWATQSGTTLHVYL--SPKLRFDLHSPGIS-----YPKLLRRSSGDGKVMILMTS--KSLAEISSN  309 (354)
T ss_pred             CCeEEEeccccceEEEEecCCcEEEEEe--CcccceeccCCCCc-----chhhhhhhcCCCcEEEEEec--ccccccccC
Confidence            22        223455555542100000  00001111211111     13567778889988877433  224444444


Q ss_pred             CCCeeEEE--------EE-e---cCceeeeccCCCceeeccCCCC
Q 014475          310 KGPVNNIL--------VV-R---RPLYLNLGSFSNPHTSSRRHGS  342 (424)
Q Consensus       310 ~~~v~~l~--------~s-~---~~~~l~~~~~d~~i~iw~~~~~  342 (424)
                      .+.+..+.        |+ |   +| +|+.|+.|..++-||+.+.
T Consensus       310 ~g~lq~~~~~el~~eIFsSPvii~g-rl~igcRDdYv~cldl~~~  353 (354)
T KOG4649|consen  310 GGELQNLEAIELSNEIFSSPVIIDG-RLLIGCRDDYVRCLDLDTW  353 (354)
T ss_pred             CCccceEEEeecCcccccCCeEEcc-EEEEEEccCeEEEEecccc
Confidence            44433333        22 2   33 5788899999999998753

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.72  E-value=1.8e-06  Score=80.58  Aligned_cols=175  Identities=14%  Similarity=0.168  Sum_probs=124.6

Q ss_pred             CCCccccCCCCceeEEEEECCCCceeeeecCCCCeeEEEECCCCCEEEEecCCCcEEEEEccCcceeeeeccccCCeEEE
Q 014475           49 SSQLREQPSASSGSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCL  128 (424)
Q Consensus        49 ~~~~l~~~~~~~g~i~vwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~  128 (424)
                      .++.++.+..+ |.|++.+.+... .....|...      .-+|.++++|+.||+|.|-.+-+.+...++. ...++.++
T Consensus        48 ~~~~~~~GtH~-g~v~~~~~~~~~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~~d-f~rpiksi  118 (846)
T KOG2066|consen   48 HDKFFALGTHR-GAVYLTTCQGNP-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQYD-FKRPIKSI  118 (846)
T ss_pred             hcceeeecccc-ceEEEEecCCcc-ccccccccc------ccCCceEEEecCCCcEEEeeccCCccceeEe-cCCcceeE
Confidence            45677788777 999999976553 333333332      5689999999999999999998888777665 45789999


Q ss_pred             EEccC-----CcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEE
Q 014475          129 VFSED-----GSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKV  203 (424)
Q Consensus       129 ~~~~~-----~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~i  203 (424)
                      +++|+     .+++++|+.-| +.++.-+-.         .......+....++|.++.|..    ++++-++.+| |++
T Consensus       119 al~Pd~~~~~sk~fv~GG~ag-lvL~er~wl---------gnk~~v~l~~~eG~I~~i~W~g----~lIAWand~G-v~v  183 (846)
T KOG2066|consen  119 ALHPDFSRQQSKQFVSGGMAG-LVLSERNWL---------GNKDSVVLSEGEGPIHSIKWRG----NLIAWANDDG-VKV  183 (846)
T ss_pred             EeccchhhhhhhheeecCcce-EEEehhhhh---------cCccceeeecCccceEEEEecC----cEEEEecCCC-cEE
Confidence            99997     56899999988 777754321         1111114556788999998853    6777777666 999


Q ss_pred             EecCCCceeeeeecCc-------ceeEEEECCCCCEEEEEeCCCcEEEEEcCC
Q 014475          204 WSLLKGRLLRNIVFPS-------VIDAIALDPAEHVFYAGSRDGSIYIAALNA  249 (424)
Q Consensus       204 wd~~~~~~~~~~~~~~-------~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~  249 (424)
                      ||..+++.+..++.+.       -...+.|.++.+ |+.|-. .+|++..++.
T Consensus       184 yd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~-LVIGW~-d~v~i~~I~~  234 (846)
T KOG2066|consen  184 YDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDR-LVIGWG-DSVKICSIKK  234 (846)
T ss_pred             EeccccceeeccCCCCCCCCcccCCCceEecCCCe-EEEecC-CeEEEEEEec
Confidence            9999998887776332       234567766554 444443 4688888873

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=98.66  E-value=9.2e-06  Score=79.41  Aligned_cols=210  Identities=15%  Similarity=0.133  Sum_probs=132.1

Q ss_pred             CCeeEEEECCCCCEEEEecCCCcEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCC----cccc
Q 014475           81 EPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLL----TVFE  156 (424)
Q Consensus        81 ~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~----~~~~  156 (424)
                      +.|.++.|..+...++.+...|.|.+-|.++.... ....-...|.+++|+||++.++..+..+++.+-+-.    ....
T Consensus        69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~e-ivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~~  147 (1265)
T KOG1920|consen   69 DEIVSVQFLADTNSICVITALGDIILVDPETLELE-IVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEKP  147 (1265)
T ss_pred             cceEEEEEecccceEEEEecCCcEEEEccccccee-eeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhccc
Confidence            58999999999999999999999999988766432 222345789999999999999988888777664431    1000


Q ss_pred             hhcccccccce--------EEeecC---------------------CcCceeEEEEEEcCceeEEEEEe-----CCCcEE
Q 014475          157 ECESQRASHLY--------LHSFTG---------------------HTLRITDIVIGYGGVSATIVSAS-----EDRTCK  202 (424)
Q Consensus       157 ~~~~~~~~~~~--------~~~~~~---------------------~~~~i~~~~~~~~~~~~~l~~~~-----~d~~v~  202 (424)
                      ...........        ...+.+                     -.+.=+.+.|-.+|  .++++..     ....++
T Consensus       148 L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg--~~fAVs~~~~~~~~Rkir  225 (1265)
T KOG1920|consen  148 LDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDG--EYFAVSFVESETGTRKIR  225 (1265)
T ss_pred             cccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCC--cEEEEEEEeccCCceeEE
Confidence            00000000000        000110                     11112346676666  7888732     237899


Q ss_pred             EEecCCCceeeee-ecCcceeEEEECCCCCEEEEEe---CCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEec
Q 014475          203 VWSLLKGRLLRNI-VFPSVIDAIALDPAEHVFYAGS---RDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYS  278 (424)
Q Consensus       203 iwd~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~---~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  278 (424)
                      +||-+ |.+-..- ...+.-.+++|-|.|..+++-.   +|+.|.+|.-+.-...      .....+.....++..++|+
T Consensus       226 V~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg------~f~l~~p~de~~ve~L~Wn  298 (1265)
T KOG1920|consen  226 VYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHG------EFVLPFPLDEKEVEELAWN  298 (1265)
T ss_pred             Eeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCcccc------ccccCCcccccchheeeec
Confidence            99976 4332221 1344567899999999988753   4567888887654311      1122233334558999999


Q ss_pred             C-CCEEEE---eCCCCcEEEEeCCCC
Q 014475          279 T-GDLLIS---GSEDGMVRVWDPITH  300 (424)
Q Consensus       279 ~-~~~l~t---~~~dg~i~iwd~~~~  300 (424)
                      . +..|++   ......|++|-+.+.
T Consensus       299 s~sdiLAv~~~~~e~~~v~lwt~~Ny  324 (1265)
T KOG1920|consen  299 SNSDILAVVTSNLENSLVQLWTTGNY  324 (1265)
T ss_pred             CCCCceeeeecccccceEEEEEecCe
Confidence            9 888877   455556999988764

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.66  E-value=1.3e-06  Score=82.54  Aligned_cols=188  Identities=11%  Similarity=0.026  Sum_probs=131.2

Q ss_pred             CcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceee
Q 014475          134 GSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLR  213 (424)
Q Consensus       134 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~  213 (424)
                      +..++.|+....+..+|+++..           ..+...-..+.++-  +..++  +.+.+|...|+|.+-|.++.+.++
T Consensus       147 ~~~~i~Gg~Q~~li~~Dl~~~~-----------e~r~~~v~a~~v~i--mR~Nn--r~lf~G~t~G~V~LrD~~s~~~ih  211 (1118)
T KOG1275|consen  147 PSTLIMGGLQEKLIHIDLNTEK-----------ETRTTNVSASGVTI--MRYNN--RNLFCGDTRGTVFLRDPNSFETIH  211 (1118)
T ss_pred             Ccceeecchhhheeeeecccce-----------eeeeeeccCCceEE--EEecC--cEEEeecccceEEeecCCcCceee
Confidence            4457777777778888886622           11212212223333  33444  789999999999999999999999


Q ss_pred             eee-cCcceeEEEECCCCCEEEEEeC---------CCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC--CC
Q 014475          214 NIV-FPSVIDAIALDPAEHVFYAGSR---------DGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST--GD  281 (424)
Q Consensus       214 ~~~-~~~~i~~~~~~~~~~~l~~~~~---------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~  281 (424)
                      ++. |.+.+..+..  .|+.|++++.         |.-|.+||++.-.         .+..+.-+.++ .-+.|+|  ..
T Consensus       212 t~~aHs~siSDfDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmr---------al~PI~~~~~P-~flrf~Psl~t  279 (1118)
T KOG1275|consen  212 TFDAHSGSISDFDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMR---------ALSPIQFPYGP-QFLRFHPSLTT  279 (1118)
T ss_pred             eeeccccceeeeec--cCCeEEEeecccccccccccchhhhhhhhhhh---------ccCCcccccCc-hhhhhcccccc
Confidence            998 8888877655  7888888764         4468899999853         23333323333 5678888  78


Q ss_pred             EEEEeCCCCcEEEEeC---CCC-cEEEEEeccCCCeeEEEEEecCceeeeccCCCceeeccCCCCCCCCCc
Q 014475          282 LLISGSEDGMVRVWDP---ITH-NIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGSQLPPPL  348 (424)
Q Consensus       282 ~l~t~~~dg~i~iwd~---~~~-~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~  348 (424)
                      .+++++..|...+-|.   .+. .-+..+......+..+.++++++.|+.|..+|.|.+|.-.....+...
T Consensus       280 ~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa~~~~P~Fn~~  350 (1118)
T KOG1275|consen  280 RLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWADRPQPQFNEY  350 (1118)
T ss_pred             eEEEEecccceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeecCCCCCccCCC
Confidence            8889999999999993   332 223334433445999999999999999999999999985544443333

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.65  E-value=1.6e-08  Score=94.61  Aligned_cols=201  Identities=16%  Similarity=0.197  Sum_probs=140.2

Q ss_pred             ceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEE
Q 014475          113 RLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATI  192 (424)
Q Consensus       113 ~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l  192 (424)
                      +..++++.|....+|++|+.+.++|+.|+..|.|+++++.++.           ......+|.++|+-+.-+.++  ..+
T Consensus      1092 r~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~-----------~e~s~ncH~SavT~vePs~dg--s~~ 1158 (1516)
T KOG1832|consen 1092 RSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGS-----------MEESVNCHQSAVTLVEPSVDG--STQ 1158 (1516)
T ss_pred             ccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCcc-----------ccccccccccccccccccCCc--cee
Confidence            3445667888999999999999999999999999999996643           345567899999999888887  454


Q ss_pred             EEEeC-CC-cEEEEecCC-CceeeeeecCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccC
Q 014475          193 VSASE-DR-TCKVWSLLK-GRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHS  269 (424)
Q Consensus       193 ~~~~~-d~-~v~iwd~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~  269 (424)
                      ++.+. .. -..+|++.. +...+.+   ..-.++.|+..-..-+.|+......+||+++..+....     +....+..
T Consensus      1159 Ltsss~S~PlsaLW~~~s~~~~~Hsf---~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~ty-----lt~~~~~~ 1230 (1516)
T KOG1832|consen 1159 LTSSSSSSPLSALWDASSTGGPRHSF---DEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTY-----LTDTVTSS 1230 (1516)
T ss_pred             eeeccccCchHHHhccccccCccccc---cccceeehhhhHHHHHhcccccceEEEecccCcHHHHh-----cCcchhhh
Confidence            44443 33 577999864 3333333   33456778776655666777778999999998532210     11111222


Q ss_pred             cCeEEEEecC-CCEEEEeCCCCcEEEEeCCCCcEEEEEeccCCCeeEEEEEecCceeeeccCCCceeeccCCCCCCC
Q 014475          270 KAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGSQLP  345 (424)
Q Consensus       270 ~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~d~~i~iw~~~~~~~~  345 (424)
                      ..-++..|+| +.+++   .||  .+||++..+.++.|...+. -..-.|+|+|..++.-+     -|||+++.++.
T Consensus      1231 y~~n~a~FsP~D~LIl---ndG--vLWDvR~~~aIh~FD~ft~-~~~G~FHP~g~eVIINS-----EIwD~RTF~lL 1296 (1516)
T KOG1832|consen 1231 YSNNLAHFSPCDTLIL---NDG--VLWDVRIPEAIHRFDQFTD-YGGGGFHPSGNEVIINS-----EIWDMRTFKLL 1296 (1516)
T ss_pred             hhccccccCCCcceEe---eCc--eeeeeccHHHHhhhhhhee-cccccccCCCceEEeec-----hhhhhHHHHHH
Confidence            3336788999 66655   455  4899999888888765442 22347999999888765     48998877663

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=98.65  E-value=3.2e-08  Score=89.47  Aligned_cols=265  Identities=16%  Similarity=0.222  Sum_probs=155.5

Q ss_pred             CceEEecceeecCCCccccCCCCceeEEEEECCCCce---eeeecCCCCeeEEEECC-CCCEEEEec----CCCcEEEEE
Q 014475           37 HGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQV---EVKSLPAEPIKPIAANS-HGTYIAGGG----QSGDIYMWE  108 (424)
Q Consensus        37 ~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~---~~~~~~~~~v~~~~~s~-~~~~l~~~~----~dg~v~iwd  108 (424)
                      ..+.|++..+..+...+++|..+ |.|-+-.+....-   .....+..++++++|++ |.+.||+|-    .|..+.|||
T Consensus        57 qy~kcva~~y~~d~cIlavG~at-G~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwd  135 (783)
T KOG1008|consen   57 QYVKCVASFYGNDRCILAVGSAT-GNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWD  135 (783)
T ss_pred             CCceeehhhcCCchhhhhhcccc-CceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCcccee
Confidence            34667773344444456666666 9999988875543   34455678999999998 677788773    356799999


Q ss_pred             ccCc--ceee--eecc-ccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEE
Q 014475          109 VASG--RLLK--KWHA-HYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVI  183 (424)
Q Consensus       109 ~~~~--~~~~--~~~~-~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  183 (424)
                      +.++  .+..  .+.+ ......+++|..+.+++++|.....+.++|++....            ....-....+..+.+
T Consensus       136 i~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~------------~~~svnTk~vqG~tV  203 (783)
T KOG1008|consen  136 INSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLD------------SVSSVNTKYVQGITV  203 (783)
T ss_pred             cccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhh------------hhhhhhhhhccccee
Confidence            9877  2211  1222 334566899998899999999999999999964211            111112234555667


Q ss_pred             EE-cCceeEEEEEeCCCcEEEEe-cCCC-ceeeeee-----cCcceeEEEECCCC-CEEEEE-eCCCcEEEEEcCCCCCC
Q 014475          184 GY-GGVSATIVSASEDRTCKVWS-LLKG-RLLRNIV-----FPSVIDAIALDPAE-HVFYAG-SRDGSIYIAALNAESPS  253 (424)
Q Consensus       184 ~~-~~~~~~l~~~~~d~~v~iwd-~~~~-~~~~~~~-----~~~~i~~~~~~~~~-~~l~~~-~~dg~i~i~d~~~~~~~  253 (424)
                      .| .+  +++++.. ||.|.+|| .++- .++..+.     .+..+..++|+|.. ..+++. -..++|+++|+......
T Consensus       204 dp~~~--nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~v~t~  280 (783)
T KOG1008|consen  204 DPFSP--NYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICVVGTE  280 (783)
T ss_pred             cCCCC--Cceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccccCCc
Confidence            77 33  5666555 99999999 4332 2222222     23458999999943 334444 45578999998654322


Q ss_pred             CCCcCceeee--e---ecc--cCcCeEEEEecC-C--CEEEEeCCCCcEEEEeCCCCcEEEEEeccCCCeeEEEEEec
Q 014475          254 TSSYGMHIIG--S---LSD--HSKAVTCLAYST-G--DLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRR  321 (424)
Q Consensus       254 ~~~~~~~~~~--~---~~~--~~~~i~~~~~~~-~--~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~  321 (424)
                      ........+.  .   ++.  .-..|.+..|++ .  +..+++-..-++.-+++..    ..+..|..|.+.+-|+-.
T Consensus       281 ~s~nn~~~~~~~s~~~~q~~~~~s~I~~f~wH~~s~~er~il~~~nl~~~Df~V~e----~~~pa~s~p~n~L~~s~~  354 (783)
T KOG1008|consen  281 GSANNSVFVNYESKYPVQPNSQCSGIDFFTWHTASPTERQILGVINLQPKDFSVHE----EVIPASSNPYNDLIFSFK  354 (783)
T ss_pred             ccccccceeeecccccccccccccceeecCcCcCCccceeEEeeccCChhhccchh----heecccCCCcccchhhhc
Confidence            1111101111  0   111  124677777776 2  2334444444444444331    122334446777776643

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=98.63  E-value=0.00016  Score=62.45  Aligned_cols=269  Identities=13%  Similarity=0.097  Sum_probs=159.1

Q ss_pred             CCceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCC---------CceeEEEEECCCCceeeee--cC-
Q 014475           12 DTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSA---------SSGSILYWSWSKPQVEVKS--LP-   79 (424)
Q Consensus        12 dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~---------~~g~i~vwd~~~~~~~~~~--~~-   79 (424)
                      .+++.|.|..+++.+-.+.....     .-+.  .+|+++.+.++..         ....|.+||..+.......  .. 
T Consensus        16 ~~rv~viD~d~~k~lGmi~~g~~-----~~~~--~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k   88 (342)
T PF06433_consen   16 TSRVYVIDADSGKLLGMIDTGFL-----GNVA--LSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPK   88 (342)
T ss_dssp             SEEEEEEETTTTEEEEEEEEESS-----EEEE--E-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS
T ss_pred             cceEEEEECCCCcEEEEeecccC-----Ccee--ECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCc
Confidence            35899999999998877765332     2233  7788888876532         1357999999987654321  11 


Q ss_pred             -----CCCeeEEEECCCCCEEEEecC--CCcEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCC
Q 014475           80 -----AEPIKPIAANSHGTYIAGGGQ--SGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLL  152 (424)
Q Consensus        80 -----~~~v~~~~~s~~~~~l~~~~~--dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~  152 (424)
                           ......++++.|++++++...  ...|.|.|+..++.+.++... + +..+-=.++ +.|.+-+.||.+.-..+.
T Consensus        89 ~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~P-G-C~~iyP~~~-~~F~~lC~DGsl~~v~Ld  165 (342)
T PF06433_consen   89 PRAQVVPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTP-G-CWLIYPSGN-RGFSMLCGDGSLLTVTLD  165 (342)
T ss_dssp             -B--BS--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGT-S-EEEEEEEET-TEEEEEETTSCEEEEEET
T ss_pred             chheecccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCC-C-EEEEEecCC-CceEEEecCCceEEEEEC
Confidence                 123356688999998887643  456999999999888777532 2 222222223 457788889999999887


Q ss_pred             cccchhcccccccceEEeecCCcCcee-EEEEEEcCceeEEEEEeCCCcEEEEecCCCceee--eee-----------cC
Q 014475          153 TVFEECESQRASHLYLHSFTGHTLRIT-DIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLR--NIV-----------FP  218 (424)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~--~~~-----------~~  218 (424)
                      ...+..      ......+..-..++. .-++...+  ..++..+.+|.|+--|+.......  .+.           .+
T Consensus       166 ~~Gk~~------~~~t~~F~~~~dp~f~~~~~~~~~--~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrP  237 (342)
T PF06433_consen  166 ADGKEA------QKSTKVFDPDDDPLFEHPAYSRDG--GRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRP  237 (342)
T ss_dssp             STSSEE------EEEEEESSTTTS-B-S--EEETTT--TEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE
T ss_pred             CCCCEe------EeeccccCCCCcccccccceECCC--CeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCC
Confidence            432211      111122222233332 22233333  455557788999988887554221  111           13


Q ss_pred             cceeEEEECCCCCEEEEEeC--------CC--cEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC--CCEEEE-
Q 014475          219 SVIDAIALDPAEHVFYAGSR--------DG--SIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST--GDLLIS-  285 (424)
Q Consensus       219 ~~i~~~~~~~~~~~l~~~~~--------dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~l~t-  285 (424)
                      +.-.-+++++..+.|++--.        ++  .|.++|+.+.         +.+..+.. ..++.+|+.+.  ..+|++ 
T Consensus       238 GG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~---------krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~  307 (342)
T PF06433_consen  238 GGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTH---------KRVARIPL-EHPIDSIAVSQDDKPLLYAL  307 (342)
T ss_dssp             -SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTT---------EEEEEEEE-EEEESEEEEESSSS-EEEEE
T ss_pred             cceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCC---------eEEEEEeC-CCccceEEEccCCCcEEEEE
Confidence            44566788876655555321        11  4777777776         45555542 34577898888  446654 


Q ss_pred             eCCCCcEEEEeCCCCcEEEEEec
Q 014475          286 GSEDGMVRVWDPITHNIVRMFRL  308 (424)
Q Consensus       286 ~~~dg~i~iwd~~~~~~~~~~~~  308 (424)
                      ...++.+.+||..+|+.++++..
T Consensus       308 ~~~~~~l~v~D~~tGk~~~~~~~  330 (342)
T PF06433_consen  308 SAGDGTLDVYDAATGKLVRSIEQ  330 (342)
T ss_dssp             ETTTTEEEEEETTT--EEEEE--
T ss_pred             cCCCCeEEEEeCcCCcEEeehhc
Confidence            45689999999999999999874

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.59  E-value=1.3e-05  Score=75.47  Aligned_cols=198  Identities=12%  Similarity=0.130  Sum_probs=128.8

Q ss_pred             ceEEecceeecCCCccccCCCCceeEEEEECCCCceeeeecCCCC-eeEEEECCCCCEEEEecCCCc-----EEEEEccC
Q 014475           38 GLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSLPAEP-IKPIAANSHGTYIAGGGQSGD-----IYMWEVAS  111 (424)
Q Consensus        38 ~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~~~~~~~-v~~~~~s~~~~~l~~~~~dg~-----v~iwd~~~  111 (424)
                      .+.|    +++.+..++.+..+ |.|.+.+-.-....-...+... |..+....+..+|++.+.|+.     |+||+++.
T Consensus        27 ~isc----~~s~~~~vvigt~~-G~V~~Ln~s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek  101 (933)
T KOG2114|consen   27 AISC----CSSSTGSVVIGTAD-GRVVILNSSFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEK  101 (933)
T ss_pred             ceeE----EcCCCceEEEeecc-ccEEEecccceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccc
Confidence            5666    67999999999988 8888887543332222233333 555544445578887776654     99999964


Q ss_pred             c------ceee--eecc-----ccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCce
Q 014475          112 G------RLLK--KWHA-----HYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRI  178 (424)
Q Consensus       112 ~------~~~~--~~~~-----~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i  178 (424)
                      -      .++.  .+..     ...++.+++.+.+-+.+|+|-.+|.|..+.-+-..       ..............+|
T Consensus       102 ~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~R-------Drgsr~~~~~~~~~pI  174 (933)
T KOG2114|consen  102 VDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILR-------DRGSRQDYSHRGKEPI  174 (933)
T ss_pred             cCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchh-------ccccceeeeccCCCCc
Confidence            3      2221  1111     35678999999999999999999999988532110       1111222233457899


Q ss_pred             eEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeee-ee-cCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCC
Q 014475          179 TDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRN-IV-FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAE  250 (424)
Q Consensus       179 ~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~-~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  250 (424)
                      +.+.+..++... ++++ ....|.+|.+....+... +. ++...+|..+++....+++++. ..+.+|+....
T Consensus       175 TgL~~~~d~~s~-lFv~-Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~~-e~l~fY~sd~~  245 (933)
T KOG2114|consen  175 TGLALRSDGKSV-LFVA-TTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAGS-EFLYFYDSDGR  245 (933)
T ss_pred             eeeEEecCCcee-EEEE-ecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEecC-ceEEEEcCCCc
Confidence            999999988422 3333 345799999874442222 33 6778889899886665665554 46999998875

>PRK02888 nitrous-oxide reductase; Validated

Probab=98.58  E-value=1.9e-05  Score=73.48  Aligned_cols=189  Identities=7%  Similarity=0.037  Sum_probs=121.6

Q ss_pred             eecCCCccccCCCCceeEEEEECCCCceeeeecCCCCeeEEEECCCCCEEEEecC-------------------------
Q 014475           46 FLASSQLREQPSASSGSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQ-------------------------  100 (424)
Q Consensus        46 ~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-------------------------  100 (424)
                      +.|||+.+...+...+.+.+.|.++.+......-.+....++++|+|+++++.+.                         
T Consensus       200 lpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vdgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~  279 (635)
T PRK02888        200 LPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVDGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIA  279 (635)
T ss_pred             cCCCCCEeecccceeEEEEEEECccceEEEEEEeCCCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchH
Confidence            6678887766666668999999998777666555556677888888888877751                         


Q ss_pred             ---------------CCcEEEEEccC----c-ceeeeeccccCCeEEEEEccCCcEEEEeeC-CCcEEEEeCCcccchhc
Q 014475          101 ---------------SGDIYMWEVAS----G-RLLKKWHAHYRAVTCLVFSEDGSFLISGSE-DGCVRIWSLLTVFEECE  159 (424)
Q Consensus       101 ---------------dg~v~iwd~~~----~-~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~-dg~i~iwd~~~~~~~~~  159 (424)
                                     ++.|.+.|..+    + +.+..+. -......+.++|||+++++++. +.++.+.|+.+......
T Consensus       280 ~iea~vkdGK~~~V~gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~  358 (635)
T PRK02888        280 RIEEAVKAGKFKTIGGSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFD  358 (635)
T ss_pred             HHHHhhhCCCEEEECCCEEEEEECCccccCCcceEEEEE-CCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhh
Confidence                           23477777776    2 3344443 3455788999999998876654 88999999987543221


Q ss_pred             ccc-cccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCC----------CceeeeeecCcceeEEE---
Q 014475          160 SQR-ASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLK----------GRLLRNIVFPSVIDAIA---  225 (424)
Q Consensus       160 ~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~----------~~~~~~~~~~~~i~~~~---  225 (424)
                      ... ..........-..++ ...+|..++  +...+...|..|..||+.+          ...+..+.....+-.+.   
T Consensus       359 ~~~~~~~~vvaevevGlGP-LHTaFDg~G--~aytslf~dsqv~kwn~~~a~~~~~g~~~~~v~~k~dV~y~pgh~~~~~  435 (635)
T PRK02888        359 GKIKPRDAVVAEPELGLGP-LHTAFDGRG--NAYTTLFLDSQIVKWNIEAAIRAYKGEKVDPIVQKLDVHYQPGHNHASM  435 (635)
T ss_pred             ccCCccceEEEeeccCCCc-ceEEECCCC--CEEEeEeecceeEEEehHHHHHHhccccCCcceecccCCCccceeeecC
Confidence            111 111122223322333 345676665  7888888999999999876          23444444222222222   


Q ss_pred             ---ECCCCCEEEEEeC
Q 014475          226 ---LDPAEHVFYAGSR  238 (424)
Q Consensus       226 ---~~~~~~~l~~~~~  238 (424)
                         -.|+|++|++...
T Consensus       436 g~t~~~dgk~l~~~nk  451 (635)
T PRK02888        436 GETKEADGKWLVSLNK  451 (635)
T ss_pred             CCcCCCCCCEEEEccc
Confidence               3678999988653

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=98.58  E-value=1.7e-05  Score=73.25  Aligned_cols=143  Identities=13%  Similarity=0.095  Sum_probs=91.7

Q ss_pred             eEEEeecCCCCCceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCceeee-----
Q 014475            2 ELLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVK-----   76 (424)
Q Consensus         2 e~~lat~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~-----   76 (424)
                      +.+++.|+ .-|.+.+++-..++..+ ++... ....+....  .+++..++|+++.. |.|.++-+........     
T Consensus        45 ~~~l~~Gs-S~G~lyl~~R~~~~~~~-~~~~~-~~~~~~~~~--vs~~e~lvAagt~~-g~V~v~ql~~~~p~~~~~~t~  118 (726)
T KOG3621|consen   45 EEYLAMGS-SAGSVYLYNRHTGEMRK-LKNEG-ATGITCVRS--VSSVEYLVAAGTAS-GRVSVFQLNKELPRDLDYVTP  118 (726)
T ss_pred             CceEEEec-ccceEEEEecCchhhhc-ccccC-ccceEEEEE--ecchhHhhhhhcCC-ceEEeehhhccCCCcceeecc
Confidence            35788899 89999999977665543 32211 222233333  56666666666665 9999998876432211     


Q ss_pred             --ecCCCCeeEEEECCCCCEEEEecCCCcEEEEEccCc----ceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEe
Q 014475           77 --SLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASG----RLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWS  150 (424)
Q Consensus        77 --~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~----~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd  150 (424)
                        ..|...|+|++|++++..+.+|...|+|..-.+.+.    ...+.+-.-.++|..+... ++.+|++...  .-.+++
T Consensus       119 ~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~-q~~LLVStl~--r~~Lc~  195 (726)
T KOG3621|consen  119 CDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYL-QSYLLVSTLT--RCILCQ  195 (726)
T ss_pred             ccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeecc-cceehHhhhh--hhheee
Confidence              235789999999999999999999999999888772    1122233345677777776 3333443332  234555


Q ss_pred             CCc
Q 014475          151 LLT  153 (424)
Q Consensus       151 ~~~  153 (424)
                      .+.
T Consensus       196 tE~  198 (726)
T KOG3621|consen  196 TEA  198 (726)
T ss_pred             cch
Confidence            543

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.54  E-value=0.00021  Score=65.21  Aligned_cols=117  Identities=16%  Similarity=0.053  Sum_probs=82.0

Q ss_pred             cCcceeEEEECC-CCCEEEEE----eCCCc----EEEEEcCCCCCCCCCcCceeee-eecccCcCeEEEEecC-CCEEEE
Q 014475          217 FPSVIDAIALDP-AEHVFYAG----SRDGS----IYIAALNAESPSTSSYGMHIIG-SLSDHSKAVTCLAYST-GDLLIS  285 (424)
Q Consensus       217 ~~~~i~~~~~~~-~~~~l~~~----~~dg~----i~i~d~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~-~~~l~t  285 (424)
                      .+....++.|+. ++..+.+.    +.+|.    -.+|+....+.       +.+. +.......|.+++++| .+.++.
T Consensus       204 TE~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~kl-------qrvsvtsipL~s~v~~ca~sp~E~kLvl  276 (545)
T PF11768_consen  204 TENDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKL-------QRVSVTSIPLPSQVICCARSPSEDKLVL  276 (545)
T ss_pred             ecCCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCce-------eEEEEEEEecCCcceEEecCcccceEEE
Confidence            444556667766 34444442    23443    34566654321       2221 2224678899999999 999999


Q ss_pred             eCCCCcEEEEeCCCCcEEEEEeccCCCeeEEEEEecCceeeeccCCCceeeccCCCC
Q 014475          286 GSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGS  342 (424)
Q Consensus       286 ~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~d~~i~iw~~~~~  342 (424)
                      |+.||+|.+||...+...  +....-..+.++|+|+|..+++|+..|.+.+||....
T Consensus       277 GC~DgSiiLyD~~~~~t~--~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALs  331 (545)
T PF11768_consen  277 GCEDGSIILYDTTRGVTL--LAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALS  331 (545)
T ss_pred             EecCCeEEEEEcCCCeee--eeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecC
Confidence            999999999998776333  2234456789999999999999999999999999744

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.54  E-value=0.00029  Score=57.52  Aligned_cols=105  Identities=18%  Similarity=0.157  Sum_probs=79.0

Q ss_pred             cCCCccccCCCCceeEEEEECCCCceeeeecCCCCeeEEEECCCCCEEEEecCCCcEEEEEccCcceeeeeccccCCeEE
Q 014475           48 ASSQLREQPSASSGSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTC  127 (424)
Q Consensus        48 ~~~~~l~~~~~~~g~i~vwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~  127 (424)
                      ++.+.++..++..+.+.--|..++...+.......+.+-+.- -|++++.|+..|.+++.+.++|+....+..-..-=..
T Consensus        20 ~dskT~v~igSHs~~~~avd~~sG~~~We~ilg~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~   98 (354)
T KOG4649|consen   20 NDSKTLVVIGSHSGIVIAVDPQSGNLIWEAILGVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVR   98 (354)
T ss_pred             cCCceEEEEecCCceEEEecCCCCcEEeehhhCceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeehhhhccc
Confidence            444444444433499999999999998888877777665554 4678999999999999999999888777543221122


Q ss_pred             EEEccCCcEEEEeeCCCcEEEEeCCc
Q 014475          128 LVFSEDGSFLISGSEDGCVRIWSLLT  153 (424)
Q Consensus       128 ~~~~~~~~~l~s~~~dg~i~iwd~~~  153 (424)
                      ....+++..+..++.|+..+..|.++
T Consensus        99 a~~d~~~glIycgshd~~~yalD~~~  124 (354)
T KOG4649|consen   99 AQCDFDGGLIYCGSHDGNFYALDPKT  124 (354)
T ss_pred             eEEcCCCceEEEecCCCcEEEecccc
Confidence            34556899999999999999999965

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=98.53  E-value=0.00038  Score=60.18  Aligned_cols=270  Identities=15%  Similarity=0.135  Sum_probs=153.7

Q ss_pred             eeEEEEECCCCceeeeecCCCCeeEEEECCCCCEEEEec----------CCCcEEEEEccCcceeeeeccccC-------
Q 014475           61 GSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGG----------QSGDIYMWEVASGRLLKKWHAHYR-------  123 (424)
Q Consensus        61 g~i~vwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~----------~dg~v~iwd~~~~~~~~~~~~~~~-------  123 (424)
                      +.+.+.|.++++..-. ...+-.-.+..+|+++.+++++          ..-.|.+||..+......+.-..+       
T Consensus        17 ~rv~viD~d~~k~lGm-i~~g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~   95 (342)
T PF06433_consen   17 SRVYVIDADSGKLLGM-IDTGFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVP   95 (342)
T ss_dssp             EEEEEEETTTTEEEEE-EEEESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS-
T ss_pred             ceEEEEECCCCcEEEE-eecccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecc
Confidence            6899999888775432 2233344467899999988753          233599999999877665432211       


Q ss_pred             CeEEEEEccCCcEEEEee--CCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcE
Q 014475          124 AVTCLVFSEDGSFLISGS--EDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTC  201 (424)
Q Consensus       124 ~i~~~~~~~~~~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v  201 (424)
                      ....+.++.|++++++.-  -.-.|.|-|+..           .+.+..+...  .  |...-|.++ ..+.+-|.||.+
T Consensus        96 ~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~-----------~kvv~ei~~P--G--C~~iyP~~~-~~F~~lC~DGsl  159 (342)
T PF06433_consen   96 YKNMFALSADGKFLYVQNFTPATSVTVVDLAA-----------KKVVGEIDTP--G--CWLIYPSGN-RGFSMLCGDGSL  159 (342)
T ss_dssp             -GGGEEE-TTSSEEEEEEESSSEEEEEEETTT-----------TEEEEEEEGT--S--EEEEEEEET-TEEEEEETTSCE
T ss_pred             cccceEEccCCcEEEEEccCCCCeEEEEECCC-----------CceeeeecCC--C--EEEEEecCC-CceEEEecCCce
Confidence            123356666777665542  234566777743           3333333211  1  222334443 457888999999


Q ss_pred             EEEecC-CCceeeeee---c--Cc-ceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecc----cCc
Q 014475          202 KVWSLL-KGRLLRNIV---F--PS-VIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSD----HSK  270 (424)
Q Consensus       202 ~iwd~~-~~~~~~~~~---~--~~-~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~----~~~  270 (424)
                      .-..+. .|+......   +  .. ....-++...+..++--+.+|.|+-.|+........ ..+.....-..    -.+
T Consensus       160 ~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~-~~~~~~t~~e~~~~WrPG  238 (342)
T PF06433_consen  160 LTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFG-KPWSLLTDAEKADGWRPG  238 (342)
T ss_dssp             EEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEE-EEEESS-HHHHHTTEEE-
T ss_pred             EEEEECCCCCEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCccccc-CcccccCccccccCcCCc
Confidence            999887 555543321   1  11 222334444555566678899999999887642111 00111000000    112


Q ss_pred             CeEEEEecC-CCEEEEeC---C-----CC--cEEEEeCCCCcEEEEEeccCCCeeEEEEEecCc-eeee-ccCCCceeec
Q 014475          271 AVTCLAYST-GDLLISGS---E-----DG--MVRVWDPITHNIVRMFRLAKGPVNNILVVRRPL-YLNL-GSFSNPHTSS  337 (424)
Q Consensus       271 ~i~~~~~~~-~~~l~t~~---~-----dg--~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~-~l~~-~~~d~~i~iw  337 (424)
                      .-.-+++++ .+.|.+-.   .     |+  .|.++|+.+++.+.++.. ..++.++..+.+.+ +|.+ ...++.+.+|
T Consensus       239 G~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~  317 (342)
T PF06433_consen  239 GWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPL-EHPIDSIAVSQDDKPLLYALSAGDGTLDVY  317 (342)
T ss_dssp             SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEE-EEEESEEEEESSSS-EEEEEETTTTEEEEE
T ss_pred             ceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeC-CCccceEEEccCCCcEEEEEcCCCCeEEEE
Confidence            334467776 44444321   1     22  488889999999999985 35788999998765 5544 4568999999


Q ss_pred             cCCCCCCCCCcc
Q 014475          338 RRHGSQLPPPLD  349 (424)
Q Consensus       338 ~~~~~~~~~~~~  349 (424)
                      |..++++....+
T Consensus       318 D~~tGk~~~~~~  329 (342)
T PF06433_consen  318 DAATGKLVRSIE  329 (342)
T ss_dssp             ETTT--EEEEE-
T ss_pred             eCcCCcEEeehh
Confidence            999886644433

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=98.51  E-value=4.7e-08  Score=88.40  Aligned_cols=201  Identities=19%  Similarity=0.261  Sum_probs=132.7

Q ss_pred             CCCeeEEEECC--CCCEEEEecCCCcEEEEEccCcce--eeeeccccCCeEEEEEcc-CCcEEEEeeC----CCcEEEEe
Q 014475           80 AEPIKPIAANS--HGTYIAGGGQSGDIYMWEVASGRL--LKKWHAHYRAVTCLVFSE-DGSFLISGSE----DGCVRIWS  150 (424)
Q Consensus        80 ~~~v~~~~~s~--~~~~l~~~~~dg~v~iwd~~~~~~--~~~~~~~~~~i~~~~~~~-~~~~l~s~~~----dg~i~iwd  150 (424)
                      ...+.|++++-  +...+++|..+|.|.+-.++...-  ....+++....++++|++ |.++||.|-.    |..+.|||
T Consensus        56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwd  135 (783)
T KOG1008|consen   56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWD  135 (783)
T ss_pred             CCCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCcccee
Confidence            34566777654  345788999999999988765422  334567888999999998 6667777632    56799999


Q ss_pred             CCcccchhcccccccceEEeec-CCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeeecCcceeEEEECC-
Q 014475          151 LLTVFEECESQRASHLYLHSFT-GHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDP-  228 (424)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~i~~~~~~~-  228 (424)
                      +.+....     +...  ..+. +......+++|..+.  +.+++|.....+.++|++.............+..+.++| 
T Consensus       136 i~s~ltv-----Pke~--~~fs~~~l~gqns~cwlrd~--klvlaGm~sr~~~ifdlRqs~~~~~svnTk~vqG~tVdp~  206 (783)
T KOG1008|consen  136 INSLLTV-----PKES--PLFSSSTLDGQNSVCWLRDT--KLVLAGMTSRSVHIFDLRQSLDSVSSVNTKYVQGITVDPF  206 (783)
T ss_pred             cccccCC-----Cccc--cccccccccCccccccccCc--chhhcccccchhhhhhhhhhhhhhhhhhhhhcccceecCC
Confidence            9875320     0111  1111 133444577887655  888999999999999998433222222334677788899 


Q ss_pred             CCCEEEEEeCCCcEEEEEc-CCCCCCCCCcCceeeeeecccC----cCeEEEEecC--CCEEEEeCC-CCcEEEEeCC
Q 014475          229 AEHVFYAGSRDGSIYIAAL-NAESPSTSSYGMHIIGSLSDHS----KAVTCLAYST--GDLLISGSE-DGMVRVWDPI  298 (424)
Q Consensus       229 ~~~~l~~~~~dg~i~i~d~-~~~~~~~~~~~~~~~~~~~~~~----~~i~~~~~~~--~~~l~t~~~-dg~i~iwd~~  298 (424)
                      .+.+++.-. ||.|.+||. ++-+        .++..+....    ..+..++|+|  ...+++... .++|+++|+.
T Consensus       207 ~~nY~cs~~-dg~iAiwD~~rnie--------npl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~  275 (783)
T KOG1008|consen  207 SPNYFCSNS-DGDIAIWDTYRNIE--------NPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDIC  275 (783)
T ss_pred             CCCceeccc-cCceeeccchhhhc--------cHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEeccc
Confidence            677776655 999999994 3322        2222222222    3489999999  556666664 5789999975

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=98.50  E-value=0.00011  Score=69.30  Aligned_cols=278  Identities=11%  Similarity=0.041  Sum_probs=153.8

Q ss_pred             ccccCCCCceeEEEEECCCCceeeeecCCCC-------ee--EEEECCCCCEEEEecCCCcEEEEEccCcceeeeecccc
Q 014475           52 LREQPSASSGSILYWSWSKPQVEVKSLPAEP-------IK--PIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHY  122 (424)
Q Consensus        52 ~l~~~~~~~g~i~vwd~~~~~~~~~~~~~~~-------v~--~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~  122 (424)
                      .+.++..+ +.|.-.|..+++..........       +.  .+... ++..++.++.+|.|+-+|.++|+.+..+....
T Consensus        63 ~vy~~~~~-g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~  140 (488)
T cd00216          63 DMYFTTSH-SALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAETGKQVWKFGNND  140 (488)
T ss_pred             EEEEeCCC-CcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCCeEEEecCCCeEEEEECCCCCEeeeecCCC
Confidence            34445555 8999999998887766543221       00  11111 22577788889999999999999887765432


Q ss_pred             CC--eEEEEEcc--CCcEEEEee---------CCCcEEEEeCCcccchhcccccccce--EEee------cCCc-Cce-e
Q 014475          123 RA--VTCLVFSE--DGSFLISGS---------EDGCVRIWSLLTVFEECESQRASHLY--LHSF------TGHT-LRI-T  179 (424)
Q Consensus       123 ~~--i~~~~~~~--~~~~l~s~~---------~dg~i~iwd~~~~~~~~~~~~~~~~~--~~~~------~~~~-~~i-~  179 (424)
                      ..  -..+.-+|  .+..++.++         .+|.+..+|..++...-.........  ....      ..+. ..+ .
T Consensus       141 ~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~  220 (488)
T cd00216         141 QVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWA  220 (488)
T ss_pred             CcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCCccC
Confidence            21  01111112  123455543         36788889988765433221110000  0000      0000 011 1


Q ss_pred             EEEEEEcCceeEEEEEeCCC------------------cEEEEecCCCceeeeeecCc-ce------eEEEEC----CCC
Q 014475          180 DIVIGYGGVSATIVSASEDR------------------TCKVWSLLKGRLLRNIVFPS-VI------DAIALD----PAE  230 (424)
Q Consensus       180 ~~~~~~~~~~~~l~~~~~d~------------------~v~iwd~~~~~~~~~~~~~~-~i------~~~~~~----~~~  230 (424)
                      ..++.+.+  ..++.++.++                  .|.-+|..+++....+.... ..      ....+.    -++
T Consensus       221 ~pa~d~~~--g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g  298 (488)
T cd00216         221 SPTYDPKT--NLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDG  298 (488)
T ss_pred             CeeEeCCC--CEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCC
Confidence            22333333  5667776554                  79999999999988875221 11      011111    123


Q ss_pred             C---EEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecCCCEEEE-----------------eCCCC
Q 014475          231 H---VFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTGDLLIS-----------------GSEDG  290 (424)
Q Consensus       231 ~---~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~t-----------------~~~dg  290 (424)
                      .   .+++++.+|.++..|.++++....         ....   ...++.+|+..++.                 ...+|
T Consensus       299 ~~~~~V~~g~~~G~l~ald~~tG~~~W~---------~~~~---~~~~~~~~~~vyv~~~~~~~~~~~~~~~~~~~~~~G  366 (488)
T cd00216         299 KPVPAIVHAPKNGFFYVLDRTTGKLISA---------RPEV---EQPMAYDPGLVYLGAFHIPLGLPPQKKKRCKKPGKG  366 (488)
T ss_pred             CeeEEEEEECCCceEEEEECCCCcEeeE---------eEee---ccccccCCceEEEccccccccCcccccCCCCCCCce
Confidence            2   678888999999999999863221         1000   01122223222221                 22467


Q ss_pred             cEEEEeCCCCcEEEEEeccC--------CCeeEEEEEecCceeeeccCCCceeeccCCCCCCC
Q 014475          291 MVRVWDPITHNIVRMFRLAK--------GPVNNILVVRRPLYLNLGSFSNPHTSSRRHGSQLP  345 (424)
Q Consensus       291 ~i~iwd~~~~~~~~~~~~~~--------~~v~~l~~s~~~~~l~~~~~d~~i~iw~~~~~~~~  345 (424)
                      .+.-.|+.+|+.+-+.....        .+...-...-.+..|..++.||.++.+|..+++..
T Consensus       367 ~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~dG~l~ald~~tG~~l  429 (488)
T cd00216         367 GLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAGAADGYFRAFDATTGKEL  429 (488)
T ss_pred             EEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEecCCeEEEECCCCeEEEEECCCCcee
Confidence            88899999999887766431        11111112235568888899999999999888764

The alignment model contains an 8-bladed beta-propeller.

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=98.49  E-value=5e-05  Score=63.67  Aligned_cols=206  Identities=14%  Similarity=0.219  Sum_probs=103.8

Q ss_pred             CCCeeEEEECCC-CCEEEEecCCCcEEEEEccCcceeeeeccc-cCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccch
Q 014475           80 AEPIKPIAANSH-GTYIAGGGQSGDIYMWEVASGRLLKKWHAH-YRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEE  157 (424)
Q Consensus        80 ~~~v~~~~~s~~-~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~-~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~  157 (424)
                      ...+..++|+|+ +.++++....+.|..++. +|+.++.+.-. .+....|++..++.++++--.++.+.++++......
T Consensus        21 ~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~~~   99 (248)
T PF06977_consen   21 LDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTIDDDTTS   99 (248)
T ss_dssp             -S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE----TT
T ss_pred             cCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEeccccc
Confidence            346999999997 556677777888888886 57777776433 356889999988887777667899999988442211


Q ss_pred             hcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeeecCcceeEEEECCCCCEEEEEe
Q 014475          158 CESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGS  237 (424)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  237 (424)
                      ..........+.....++..+-.++|.+.+  +.|+.+-+..-..++.++...                           
T Consensus       100 ~~~~~~~~~~l~~~~~~N~G~EGla~D~~~--~~L~v~kE~~P~~l~~~~~~~---------------------------  150 (248)
T PF06977_consen  100 LDRADVQKISLGFPNKGNKGFEGLAYDPKT--NRLFVAKERKPKRLYEVNGFP---------------------------  150 (248)
T ss_dssp             --EEEEEEEE---S---SS--EEEEEETTT--TEEEEEEESSSEEEEEEESTT---------------------------
T ss_pred             cchhhceEEecccccCCCcceEEEEEcCCC--CEEEEEeCCCChhhEEEcccc---------------------------
Confidence            110000000000111233445666666655  333333333222222221100                           


Q ss_pred             CCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC--CCEEEEeCCCCcEEEEeCCCCcEEEEEeccCC----
Q 014475          238 RDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST--GDLLISGSEDGMVRVWDPITHNIVRMFRLAKG----  311 (424)
Q Consensus       238 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~----  311 (424)
                      ....+.+.+...            ..........+.+++++|  +++++....+..|..+| .+|+.+..+....+    
T Consensus       151 ~~~~~~~~~~~~------------~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl  217 (248)
T PF06977_consen  151 GGFDLFVSDDQD------------LDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGL  217 (248)
T ss_dssp             -SS--EEEE-HH------------HH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-
T ss_pred             Cccceeeccccc------------cccccceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCc
Confidence            011111111111            000112334578899999  78888888999999999 77888877764432    


Q ss_pred             -----CeeEEEEEecCceeeec
Q 014475          312 -----PVNNILVVRRPLYLNLG  328 (424)
Q Consensus       312 -----~v~~l~~s~~~~~l~~~  328 (424)
                           .--.++|.++|...++.
T Consensus       218 ~~~~~QpEGIa~d~~G~LYIvs  239 (248)
T PF06977_consen  218 SKDIPQPEGIAFDPDGNLYIVS  239 (248)
T ss_dssp             SS---SEEEEEE-TT--EEEEE
T ss_pred             ccccCCccEEEECCCCCEEEEc
Confidence                 45789999998665553

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=98.46  E-value=6.5e-05  Score=67.90  Aligned_cols=215  Identities=13%  Similarity=0.104  Sum_probs=125.2

Q ss_pred             CeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchh------cc-----------------------c---ccccceEEee
Q 014475          124 AVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEEC------ES-----------------------Q---RASHLYLHSF  171 (424)
Q Consensus       124 ~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~------~~-----------------------~---~~~~~~~~~~  171 (424)
                      .|+.+.|.++...|++|...|.|.+|.........      ..                       .   .....+...+
T Consensus         3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~   82 (395)
T PF08596_consen    3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL   82 (395)
T ss_dssp             -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred             eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence            48899999988889999999999998765432111      00                       0   0112233444


Q ss_pred             cCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeeecC---------cceeEEEECC-----CC---CEEE
Q 014475          172 TGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFP---------SVIDAIALDP-----AE---HVFY  234 (424)
Q Consensus       172 ~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~---------~~i~~~~~~~-----~~---~~l~  234 (424)
                      ....++|++++.+.-|   +++.|..+|.+.+.|+|....+..-...         ..++++.|..     |+   -.++
T Consensus        83 ~~~~g~vtal~~S~iG---Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~  159 (395)
T PF08596_consen   83 DAKQGPVTALKNSDIG---FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLL  159 (395)
T ss_dssp             ---S-SEEEEEE-BTS---EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEE
T ss_pred             eccCCcEeEEecCCCc---EEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEE
Confidence            5568899999998664   9999999999999999988877764422         3567777752     33   5788


Q ss_pred             EEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEE-ecC----------------------CCEEEEeCCCCc
Q 014475          235 AGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLA-YST----------------------GDLLISGSEDGM  291 (424)
Q Consensus       235 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~----------------------~~~l~t~~~dg~  291 (424)
                      +|+..|.+.+|.+.....  ..+..........+.++|..+. ++.                      ..+++++ .+..
T Consensus       160 vGTn~G~v~~fkIlp~~~--g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvv-Se~~  236 (395)
T PF08596_consen  160 VGTNSGNVLTFKILPSSN--GRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVV-SESD  236 (395)
T ss_dssp             EEETTSEEEEEEEEE-GG--G-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE--SSE
T ss_pred             EEeCCCCEEEEEEecCCC--CceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEE-cccc
Confidence            999999999998853111  1111122222234556655554 211                      1244444 4667


Q ss_pred             EEEEeCCCCcEEEEEeccCCCeeEEEEE-----ecCceeeeccCCCceeeccCCCCCC
Q 014475          292 VRVWDPITHNIVRMFRLAKGPVNNILVV-----RRPLYLNLGSFSNPHTSSRRHGSQL  344 (424)
Q Consensus       292 i~iwd~~~~~~~~~~~~~~~~v~~l~~s-----~~~~~l~~~~~d~~i~iw~~~~~~~  344 (424)
                      ++++...+.+..+......-....+.+-     ..+..|++-..+|.++++.++.-+.
T Consensus       237 irv~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lke  294 (395)
T PF08596_consen  237 IRVFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKE  294 (395)
T ss_dssp             EEEE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--E
T ss_pred             eEEEeCCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchH
Confidence            9999999888766554222233445553     4677888889999999999986543

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.43  E-value=1e-05  Score=73.45  Aligned_cols=88  Identities=16%  Similarity=0.269  Sum_probs=69.4

Q ss_pred             EEEECCCCcee----eeecCCCCeeEEEECCCCCEEEEecCCCcEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEE
Q 014475           64 LYWSWSKPQVE----VKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLIS  139 (424)
Q Consensus        64 ~vwd~~~~~~~----~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s  139 (424)
                      .+|+....+..    .....+..|.+++++|+...++.|+.||+|.+||...+...  +....-.++.++|+|+|..+++
T Consensus       239 ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~--~~ka~~~P~~iaWHp~gai~~V  316 (545)
T PF11768_consen  239 CIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTL--LAKAEFIPTLIAWHPDGAIFVV  316 (545)
T ss_pred             EEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeee--eeeecccceEEEEcCCCcEEEE
Confidence            34555444332    22346789999999999999999999999999998766333  2234566889999999999999


Q ss_pred             eeCCCcEEEEeCCc
Q 014475          140 GSEDGCVRIWSLLT  153 (424)
Q Consensus       140 ~~~dg~i~iwd~~~  153 (424)
                      |+..|.+.+||+.-
T Consensus       317 ~s~qGelQ~FD~AL  330 (545)
T PF11768_consen  317 GSEQGELQCFDMAL  330 (545)
T ss_pred             EcCCceEEEEEeec
Confidence            99999999999854

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.42  E-value=7.9e-06  Score=76.85  Aligned_cols=109  Identities=13%  Similarity=0.150  Sum_probs=84.1

Q ss_pred             eEEEECCCCCEEEEec----CCCcEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhc
Q 014475           84 KPIAANSHGTYIAGGG----QSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECE  159 (424)
Q Consensus        84 ~~~~~s~~~~~l~~~~----~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~  159 (424)
                      +-..|+|...++|+++    ..|.|.||- ++|++..... ..-.+++++|+|..-.|+.|=.-|.+.+|...+      
T Consensus        19 ti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt-~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~------   90 (1416)
T KOG3617|consen   19 TISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVT-YPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNT------   90 (1416)
T ss_pred             cccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCcccc-cceehhhhccChHHHHHhhccccceeEEEecCC------
Confidence            4456888888888875    357899985 6776554332 112356799999888888888889999998744      


Q ss_pred             ccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecC
Q 014475          160 SQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLL  207 (424)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~  207 (424)
                           .........|..+|..+.|+++|  ..++++..-|.|.+|...
T Consensus        91 -----~e~htv~~th~a~i~~l~wS~~G--~~l~t~d~~g~v~lwr~d  131 (1416)
T KOG3617|consen   91 -----TETHTVVETHPAPIQGLDWSHDG--TVLMTLDNPGSVHLWRYD  131 (1416)
T ss_pred             -----ceeeeeccCCCCCceeEEecCCC--CeEEEcCCCceeEEEEee
Confidence                 23334456799999999999999  899999999999999875

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.42  E-value=1.2e-05  Score=69.15  Aligned_cols=224  Identities=14%  Similarity=0.059  Sum_probs=131.6

Q ss_pred             EEEEEccCcceeeeeccccCCeEEEEEccCCc-EEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEE
Q 014475          104 IYMWEVASGRLLKKWHAHYRAVTCLVFSEDGS-FLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIV  182 (424)
Q Consensus       104 v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  182 (424)
                      +++.+..+.+....+..|...|..++|+|..+ ++..++.+..|+|.|+++           ...+..+..+ ..+++++
T Consensus       175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet-----------~~~vssy~a~-~~~wSC~  242 (463)
T KOG1645|consen  175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLET-----------SCVVSSYIAY-NQIWSCC  242 (463)
T ss_pred             eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEeccc-----------ceeeeheecc-CCceeee
Confidence            66666655566666778889999999999665 788899999999999965           3445556666 7899999


Q ss_pred             EEEcCceeEEEEEeCCCcEEEEecCCCceee-eee---cCcceeEEE------ECCCCCEEEEEeCCCcEEEEEcCCCCC
Q 014475          183 IGYGGVSATIVSASEDRTCKVWSLLKGRLLR-NIV---FPSVIDAIA------LDPAEHVFYAGSRDGSIYIAALNAESP  252 (424)
Q Consensus       183 ~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~-~~~---~~~~i~~~~------~~~~~~~l~~~~~dg~i~i~d~~~~~~  252 (424)
                      |.-+.. +++..|-..|.|.+||++..+-.. .+.   ...+|..++      ..+.+.+++....+  +..|.+.....
T Consensus       243 wDlde~-h~IYaGl~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~  319 (463)
T KOG1645|consen  243 WDLDER-HVIYAGLQNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAE  319 (463)
T ss_pred             eccCCc-ceeEEeccCceEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhcccc
Confidence            998874 889999999999999998654321 111   122333332      23345555544443  44565544321


Q ss_pred             CCCCcCceeeeeecccCcCeEEEEecC--CCEEEEeCCCCc------EEE-EeCCCCcEEEEEe-ccCC-C------eeE
Q 014475          253 STSSYGMHIIGSLSDHSKAVTCLAYST--GDLLISGSEDGM------VRV-WDPITHNIVRMFR-LAKG-P------VNN  315 (424)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~l~t~~~dg~------i~i-wd~~~~~~~~~~~-~~~~-~------v~~  315 (424)
                      .     +.++..+ +..+...+++.++  +..|++.-.+.+      +-. -|-.+|.++...+ .+.+ .      -..
T Consensus       320 ~-----~p~vlel-e~pG~cismqy~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~a  393 (463)
T KOG1645|consen  320 C-----LPCVLEL-EPPGICISMQYHGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQA  393 (463)
T ss_pred             C-----CCccccc-CCCcceeeeeecCccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccc
Confidence            1     1122222 2355667777777  445555443211      111 1223344333222 1111 1      111


Q ss_pred             EEEEecCceee-eccCCCceeeccCCCCCCCCCc
Q 014475          316 ILVVRRPLYLN-LGSFSNPHTSSRRHGSQLPPPL  348 (424)
Q Consensus       316 l~~s~~~~~l~-~~~~d~~i~iw~~~~~~~~~~~  348 (424)
                      +.-.++..+|+ .+...+.+.+||..+.+..+.+
T Consensus       394 i~~~~~nn~iv~~gd~tn~lil~D~~s~evvQ~l  427 (463)
T KOG1645|consen  394 IRAVEDNNYIVVVGDSTNELILQDPHSFEVVQTL  427 (463)
T ss_pred             eeccccccEEEEecCCcceeEEeccchhheeeec
Confidence            22234555554 4666778999999977665443

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=98.41  E-value=0.00038  Score=60.65  Aligned_cols=243  Identities=16%  Similarity=0.177  Sum_probs=133.9

Q ss_pred             CCCCEEEEecCCCcEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccc---cccc
Q 014475           90 SHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQR---ASHL  166 (424)
Q Consensus        90 ~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~---~~~~  166 (424)
                      ..++.|+.|+.+| +.+++........... +...|..+...|+-+.+++-+ |+.++++++...........   .+..
T Consensus         5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~-~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~   81 (275)
T PF00780_consen    5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRIL-KLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSR   81 (275)
T ss_pred             cCCCEEEEEECCC-EEEEEecCCccceeEe-ecceEEEEEEecccCEEEEEc-CCccEEEEchhhccccccccccccccc
Confidence            3578899999888 9999983332222222 233499999999777766664 59999999976443221110   0000


Q ss_pred             eEEeecCCcCceeEEE-EEEcCceeEEEEEeCCCcEEEEecCCC-----ceeeeeecCcceeEEEECCCCCEEEEEeCCC
Q 014475          167 YLHSFTGHTLRITDIV-IGYGGVSATIVSASEDRTCKVWSLLKG-----RLLRNIVFPSVIDAIALDPAEHVFYAGSRDG  240 (424)
Q Consensus       167 ~~~~~~~~~~~i~~~~-~~~~~~~~~l~~~~~d~~v~iwd~~~~-----~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg  240 (424)
                      ...........+...+ -..... ...+.......|.+|.....     +..+.+..+..+..++|.  ++.+++|..+ 
T Consensus        82 ~~~~~~~~~~~v~~f~~~~~~~~-~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~--~~~i~v~~~~-  157 (275)
T PF00780_consen   82 SLPTKLPETKGVSFFAVNGGHEG-SRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLPDPPSSIAFL--GNKICVGTSK-  157 (275)
T ss_pred             cccccccccCCeeEEeecccccc-ceEEEEEECCEEEEEEEECCcccccceeEEEEcCCCcEEEEEe--CCEEEEEeCC-
Confidence            0000111222333333 111222 33444444558888877653     566777789999999998  6667777754 


Q ss_pred             cEEEEEcCCCCCCCCCcCcee---eeeecccCcCeEEEEecCCCEEEEeCCCCcEEEEeCCCCcEEE--EEeccCCCeeE
Q 014475          241 SIYIAALNAESPSTSSYGMHI---IGSLSDHSKAVTCLAYSTGDLLISGSEDGMVRVWDPITHNIVR--MFRLAKGPVNN  315 (424)
Q Consensus       241 ~i~i~d~~~~~~~~~~~~~~~---~~~~~~~~~~i~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~--~~~~~~~~v~~  315 (424)
                      ...+.|+.++....-......   .........++..+....+.+|++-  |..-.+-| ..|++.+  .+.-. ....+
T Consensus       158 ~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Ll~~--~~~g~fv~-~~G~~~r~~~i~W~-~~p~~  233 (275)
T PF00780_consen  158 GFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLSDNEFLLCY--DNIGVFVN-KNGEPSRKSTIQWS-SAPQS  233 (275)
T ss_pred             ceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeCCceEEEEe--cceEEEEc-CCCCcCcccEEEcC-CchhE
Confidence            488889986542110000000   0001112234444555446666654  33233334 4565544  33332 34556


Q ss_pred             EEEEecCceeeeccCCCceeeccCCCCCCCC
Q 014475          316 ILVVRRPLYLNLGSFSNPHTSSRRHGSQLPP  346 (424)
Q Consensus       316 l~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~  346 (424)
                      +++.  ..||++.+.++ |.+|++.++++.+
T Consensus       234 ~~~~--~pyli~~~~~~-iEV~~~~~~~lvQ  261 (275)
T PF00780_consen  234 VAYS--SPYLIAFSSNS-IEVRSLETGELVQ  261 (275)
T ss_pred             EEEE--CCEEEEECCCE-EEEEECcCCcEEE
Confidence            6663  34777766644 9999999886643

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=98.41  E-value=0.00017  Score=60.51  Aligned_cols=203  Identities=12%  Similarity=0.136  Sum_probs=115.1

Q ss_pred             CceEEecceeecCCCccccCCCCceeEEEEECCCCceeeee--cCCCCeeEEEECCCCCEEEEecCCCcEEEEEccCcc-
Q 014475           37 HGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKS--LPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGR-  113 (424)
Q Consensus        37 ~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~-  113 (424)
                      ..+..++  |.|+.+.|++.....+.|...+.+ +++..+.  ...+..-.|++..++.++++--.++.+.++++.... 
T Consensus        22 ~e~SGLT--y~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~~   98 (248)
T PF06977_consen   22 DELSGLT--YNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTIDDDTT   98 (248)
T ss_dssp             S-EEEEE--EETTTTEEEEEETTTTEEEEEETT---EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE----T
T ss_pred             CCccccE--EcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEecccc
Confidence            4477777  999877666665555999888875 4443332  224678899999888888877678999999884321 


Q ss_pred             -----eeeee-----ccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEE
Q 014475          114 -----LLKKW-----HAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVI  183 (424)
Q Consensus       114 -----~~~~~-----~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  183 (424)
                           ....+     ..++..+..++|.|.++.|+.+-...-..+|.+..........................+.++.+
T Consensus        99 ~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~  178 (248)
T PF06977_consen   99 SLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSY  178 (248)
T ss_dssp             T--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEEE
T ss_pred             ccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccccceEE
Confidence                 11112     13556789999999877777777776677777643110000000000000001223445788889


Q ss_pred             EEcCceeEEEEEeCCCcEEEEecCCCceeeeeecCc----------ceeEEEECCCCCEEEEEeCCCcEEEE
Q 014475          184 GYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPS----------VIDAIALDPAEHVFYAGSRDGSIYIA  245 (424)
Q Consensus       184 ~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~----------~i~~~~~~~~~~~l~~~~~dg~i~i~  245 (424)
                      +|... .+++.+..+..|..+| .+|+++..+....          ....+++.++|+++++ +.-+..++|
T Consensus       179 ~p~t~-~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIv-sEpNlfy~f  247 (248)
T PF06977_consen  179 DPRTG-HLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIV-SEPNLFYRF  247 (248)
T ss_dssp             ETTTT-EEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEE-ETTTEEEEE
T ss_pred             cCCCC-eEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEE-cCCceEEEe
Confidence            88754 7778888889999999 6788877776332          5789999999865554 455544443

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.39  E-value=0.00017  Score=66.13  Aligned_cols=229  Identities=13%  Similarity=0.165  Sum_probs=117.9

Q ss_pred             CCCeeEEEECCCCCEEEEecCCCcEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEE-eCCcccchh
Q 014475           80 AEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIW-SLLTVFEEC  158 (424)
Q Consensus        80 ~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iw-d~~~~~~~~  158 (424)
                      .-....+.++|+|+++++ +.+|...||.....+...     .+.-....|.+.+ .+|+-...+.|.++ ++..     
T Consensus        32 ~~~p~~ls~npngr~v~V-~g~geY~iyt~~~~r~k~-----~G~g~~~vw~~~n-~yAv~~~~~~I~I~kn~~~-----   99 (443)
T PF04053_consen   32 EIYPQSLSHNPNGRFVLV-CGDGEYEIYTALAWRNKA-----FGSGLSFVWSSRN-RYAVLESSSTIKIYKNFKN-----   99 (443)
T ss_dssp             SS--SEEEE-TTSSEEEE-EETTEEEEEETTTTEEEE-----EEE-SEEEE-TSS-EEEEE-TTS-EEEEETTEE-----
T ss_pred             CcCCeeEEECCCCCEEEE-EcCCEEEEEEccCCcccc-----cCceeEEEEecCc-cEEEEECCCeEEEEEcCcc-----
Confidence            445789999999999998 457888888733322221     2334568898855 46777778889996 3321     


Q ss_pred             cccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeeecCcceeEEEECCCCCEEEEEeC
Q 014475          159 ESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSR  238 (424)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~  238 (424)
                           ..  ...+.. ...+..+-.   |  ..|...+.+ .|.+||..+++.+..+.... |..+.|++++.+++..+.
T Consensus       100 -----~~--~k~i~~-~~~~~~If~---G--~LL~~~~~~-~i~~yDw~~~~~i~~i~v~~-vk~V~Ws~~g~~val~t~  164 (443)
T PF04053_consen  100 -----EV--VKSIKL-PFSVEKIFG---G--NLLGVKSSD-FICFYDWETGKLIRRIDVSA-VKYVIWSDDGELVALVTK  164 (443)
T ss_dssp             ------T--T------SS-EEEEE----S--SSEEEEETT-EEEEE-TTT--EEEEESS-E--EEEEE-TTSSEEEEE-S
T ss_pred             -----cc--ceEEcC-CcccceEEc---C--cEEEEECCC-CEEEEEhhHcceeeEEecCC-CcEEEEECCCCEEEEEeC
Confidence                 00  011111 112222222   4  566666544 89999999999999998664 899999999999999875


Q ss_pred             CCcEEEEEcCCCCCCC-CCcCce-eeeeecccCcCeEEEEecCCCEEEEeCCCCcEEEEeCCCCcEEEEEeccCCCeeEE
Q 014475          239 DGSIYIAALNAESPST-SSYGMH-IIGSLSDHSKAVTCLAYSTGDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNI  316 (424)
Q Consensus       239 dg~i~i~d~~~~~~~~-~~~~~~-~~~~~~~~~~~i~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l  316 (424)
                      + .+++++.+...... ...+.. .......-...|.+..|..+ .++-.... .++.+  ..|+ ...+..-..++.=+
T Consensus       165 ~-~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d-~fiYtT~~-~lkYl--~~Ge-~~~i~~ld~~~yll  238 (443)
T PF04053_consen  165 D-SIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED-CFIYTTSN-HLKYL--VNGE-TGIIAHLDKPLYLL  238 (443)
T ss_dssp             --SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT-EEEEE-TT-EEEEE--ETTE-EEEEEE-SS--EEE
T ss_pred             C-eEEEEEecchhcccccccCchhceEEEEEecceeEEEEEEcC-EEEEEcCC-eEEEE--EcCC-cceEEEcCCceEEE
Confidence            5 67777765530000 000000 12222222467888888744 44433333 56552  3232 23333234577777


Q ss_pred             EEEecCceeeeccCCCceeeccCCC
Q 014475          317 LVVRRPLYLNLGSFSNPHTSSRRHG  341 (424)
Q Consensus       317 ~~s~~~~~l~~~~~d~~i~iw~~~~  341 (424)
                      ...|+...+.....|+.+..+.++.
T Consensus       239 gy~~~~~~ly~~Dr~~~v~~~~ld~  263 (443)
T PF04053_consen  239 GYLPKENRLYLIDRDGNVISYELDL  263 (443)
T ss_dssp             EEETTTTEEEEE-TT--EEEEE--H
T ss_pred             EEEccCCEEEEEECCCCEEEEEECH
Confidence            7888777788888888888777653

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=98.36  E-value=0.0012  Score=60.66  Aligned_cols=180  Identities=9%  Similarity=0.042  Sum_probs=94.9

Q ss_pred             eEEEEECCCCceeeeecCCCCeeEEEECCCCCEEEEecCCCcEEEEEccCcceeeee-------ccccCCeEEEEEccCC
Q 014475           62 SILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKW-------HAHYRAVTCLVFSEDG  134 (424)
Q Consensus        62 ~i~vwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~-------~~~~~~i~~~~~~~~~  134 (424)
                      .|++|+..........-..+.+.++.|+.+..++ +...||.+++||+. |+....+       ......+....+..+|
T Consensus        62 ~I~iys~sG~ll~~i~w~~~~iv~~~wt~~e~Lv-vV~~dG~v~vy~~~-G~~~fsl~~~i~~~~v~e~~i~~~~~~~~G  139 (410)
T PF04841_consen   62 SIQIYSSSGKLLSSIPWDSGRIVGMGWTDDEELV-VVQSDGTVRVYDLF-GEFQFSLGEEIEEEKVLECRIFAIWFYKNG  139 (410)
T ss_pred             EEEEECCCCCEeEEEEECCCCEEEEEECCCCeEE-EEEcCCEEEEEeCC-CceeechhhhccccCcccccccccccCCCC
Confidence            5999998776554333344899999999876655 45689999999985 3331111       1112223333444455


Q ss_pred             cEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeee
Q 014475          135 SFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRN  214 (424)
Q Consensus       135 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~  214 (424)
                      -.+++  .++.+.+.+-......................+........+..+.  ...+....++.+.+.+-...+.   
T Consensus       140 ivvLt--~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~--~~~i~~~~g~~i~~i~~~~~~~---  212 (410)
T PF04841_consen  140 IVVLT--GNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDR--VVEILLANGETIYIIDENSFKQ---  212 (410)
T ss_pred             EEEEC--CCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCc--ceEEEEecCCEEEEEEcccccc---
Confidence            33333  4445544432211100000000000000011111110001233333  4444445556666444332211   


Q ss_pred             eecCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCC
Q 014475          215 IVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAE  250 (424)
Q Consensus       215 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  250 (424)
                      +...+++..+++||+++++|.-..+|.+.+.+.+-.
T Consensus       213 i~~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~  248 (410)
T PF04841_consen  213 IDSDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFS  248 (410)
T ss_pred             ccCCCCeEEEEECCCCCEEEEEECCCCEEEEECccc
Confidence            334568999999999999999999999999887654

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=98.34  E-value=0.00062  Score=61.67  Aligned_cols=236  Identities=15%  Similarity=0.151  Sum_probs=128.8

Q ss_pred             CeeEEEECCCCCEEEEecCCCcEEEEEccCccee-------------------------------------------eee
Q 014475           82 PIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLL-------------------------------------------KKW  118 (424)
Q Consensus        82 ~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~-------------------------------------------~~~  118 (424)
                      .|+.+.|.++..-|++|...|.|.||.....+.-                                           ..+
T Consensus         3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~   82 (395)
T PF08596_consen    3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL   82 (395)
T ss_dssp             -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred             eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence            5788999999888999999999999876432110                                           011


Q ss_pred             ccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEE---cCc---eeEE
Q 014475          119 HAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGY---GGV---SATI  192 (424)
Q Consensus       119 ~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~~---~~~l  192 (424)
                      +...++|++++.+ |-.+++.|..+|.+.|.|++............   ...-......++++.|..   .++   .-.+
T Consensus        83 ~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~---~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L  158 (395)
T PF08596_consen   83 DAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRE---SFLSKSSSSYVTSIEFSVMTLGGDGYSSICL  158 (395)
T ss_dssp             ---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG-----T-SS----EEEEEEEEEE-TTSSSEEEEE
T ss_pred             eccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccc---cccccccccCeeEEEEEEEecCCCcccceEE
Confidence            2346789999997 55689999999999999997632211110000   001112345677887762   222   2578


Q ss_pred             EEEeCCCcEEEEecCC---Ccee----eee-ecCcceeEEE-ECCC-C-------------------CEEEEEeCCCcEE
Q 014475          193 VSASEDRTCKVWSLLK---GRLL----RNI-VFPSVIDAIA-LDPA-E-------------------HVFYAGSRDGSIY  243 (424)
Q Consensus       193 ~~~~~d~~v~iwd~~~---~~~~----~~~-~~~~~i~~~~-~~~~-~-------------------~~l~~~~~dg~i~  243 (424)
                      ++|+..|.+.+|.+.-   +...    ... .+.+++..+. ++.+ |                   .-+++...+..++
T Consensus       159 ~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~ir  238 (395)
T PF08596_consen  159 LVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIR  238 (395)
T ss_dssp             EEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEE
T ss_pred             EEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceE
Confidence            8999999999998741   1111    111 2344444443 3211 1                   1244555577899


Q ss_pred             EEEcCCCCCCCCCcCceeeeeecccCcCeEEEEec-----C-CCEEEEeCCCCcEEEEeCCCCcEEEEEeccC----CCe
Q 014475          244 IAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYS-----T-GDLLISGSEDGMVRVWDPITHNIVRMFRLAK----GPV  313 (424)
Q Consensus       244 i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-----~-~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~----~~v  313 (424)
                      ++...+.+        ...+.+ ........+.+-     . +..|++-..+|.|+++.+..-+.+..++.+.    ..+
T Consensus       239 v~~~~~~k--------~~~K~~-~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~  309 (395)
T PF08596_consen  239 VFKPPKSK--------GAHKSF-DDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRL  309 (395)
T ss_dssp             EE-TT-----------EEEEE--SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHH
T ss_pred             EEeCCCCc--------ccceee-ccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCccccccc
Confidence            99988764        222222 222222333342     2 6678888899999999999999998887643    245


Q ss_pred             eEEEEEecCceeeeccC
Q 014475          314 NNILVVRRPLYLNLGSF  330 (424)
Q Consensus       314 ~~l~~s~~~~~l~~~~~  330 (424)
                      ....++++|..+.-.+.
T Consensus       310 ~~ssis~~Gdi~~~~gp  326 (395)
T PF08596_consen  310 SSSSISRNGDIFYWTGP  326 (395)
T ss_dssp             TT-EE-TTS-EEEE-SS
T ss_pred             cccEECCCCCEEEEeCc
Confidence            67788999987765543

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=98.31  E-value=0.0035  Score=59.59  Aligned_cols=112  Identities=12%  Similarity=0.126  Sum_probs=64.8

Q ss_pred             EEeecCCCCCceEEEeCCCCceEEEeeCCCC-CCCceEEec---ceeecCCCccccCCCCceeEEEEECCCCceeeeecC
Q 014475            4 LIASSSVADTGIGCWDLESGAEQLRYKSCAS-PPHGLACVG---QRFLASSQLREQPSASSGSILYWSWSKPQVEVKSLP   79 (424)
Q Consensus         4 ~lat~~~~dg~i~vwd~~~~~~~~~~~~~~~-~~~~v~~~~---~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~~~~   79 (424)
                      .|..++ .++.|.-.|.++|+.+-++..... ......+..   ....-.+..++.+..+ +.+.-.|..+++.......
T Consensus        71 ~vyv~s-~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t~d-g~l~ALDa~TGk~~W~~~~  148 (527)
T TIGR03075        71 VMYVTT-SYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGTLD-ARLVALDAKTGKVVWSKKN  148 (527)
T ss_pred             EEEEEC-CCCcEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEEcCC-CEEEEEECCCCCEEeeccc
Confidence            456666 688999999999998877653211 011110100   0001123345555565 8999999999988766542


Q ss_pred             CCC--eeEEEECC---CCCEEEEec------CCCcEEEEEccCcceeeee
Q 014475           80 AEP--IKPIAANS---HGTYIAGGG------QSGDIYMWEVASGRLLKKW  118 (424)
Q Consensus        80 ~~~--v~~~~~s~---~~~~l~~~~------~dg~v~iwd~~~~~~~~~~  118 (424)
                      ...  -..+.-+|   ++ .++++.      .+|.|.-+|.++|+.+-.+
T Consensus       149 ~~~~~~~~~tssP~v~~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~  197 (527)
T TIGR03075       149 GDYKAGYTITAAPLVVKG-KVITGISGGEFGVRGYVTAYDAKTGKLVWRR  197 (527)
T ss_pred             ccccccccccCCcEEECC-EEEEeecccccCCCcEEEEEECCCCceeEec
Confidence            211  01111122   34 444443      2688999999999887654

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=98.25  E-value=0.0016  Score=56.73  Aligned_cols=233  Identities=15%  Similarity=0.120  Sum_probs=133.8

Q ss_pred             ecCCCccccCCCCceeEEEEECCCCceeeeecCCCCeeEEEECCCCCEEEEecCCCcEEEEEccCcceeeee--------
Q 014475           47 LASSQLREQPSASSGSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKW--------  118 (424)
Q Consensus        47 ~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~--------  118 (424)
                      ...++.|+.|..+ | +.+++..............+|..+...|+-+.+++-+ |+.+.++++..-......        
T Consensus         4 ~~~~~~L~vGt~~-G-l~~~~~~~~~~~~~i~~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~   80 (275)
T PF00780_consen    4 DSWGDRLLVGTED-G-LYVYDLSDPSKPTRILKLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKS   80 (275)
T ss_pred             ccCCCEEEEEECC-C-EEEEEecCCccceeEeecceEEEEEEecccCEEEEEc-CCccEEEEchhhcccccccccccccc
Confidence            3567788888665 7 8999984444444444555699999999877776654 599999999765443311        


Q ss_pred             ------ccccCCeEEEE--EccCCcEEEEeeCCCcEEEEeCCcccchhccccccc-ceEEeecCCcCceeEEEEEEcCce
Q 014475          119 ------HAHYRAVTCLV--FSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASH-LYLHSFTGHTLRITDIVIGYGGVS  189 (424)
Q Consensus       119 ------~~~~~~i~~~~--~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~  189 (424)
                            ......+...+  -...+...+.......|.+|......       ... ...+.+. -...+.+++|..    
T Consensus        81 ~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~-------~~f~~~~ke~~-lp~~~~~i~~~~----  148 (275)
T PF00780_consen   81 RSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPR-------NSFSKLLKEIS-LPDPPSSIAFLG----  148 (275)
T ss_pred             ccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCc-------ccccceeEEEE-cCCCcEEEEEeC----
Confidence                  11223444444  11233333334445589999885521       111 2333333 346778888883    


Q ss_pred             eEEEEEeCCCcEEEEecCCCceeeeeecC-------------cceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCC
Q 014475          190 ATIVSASEDRTCKVWSLLKGRLLRNIVFP-------------SVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSS  256 (424)
Q Consensus       190 ~~l~~~~~d~~v~iwd~~~~~~~~~~~~~-------------~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~  256 (424)
                      +.++.|..+ ...+.|+.++.....+...             .++..+.. +++.+|++.  +..-.+.|..... .   
T Consensus       149 ~~i~v~~~~-~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~Ll~~--~~~g~fv~~~G~~-~---  220 (275)
T PF00780_consen  149 NKICVGTSK-GFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQL-SDNEFLLCY--DNIGVFVNKNGEP-S---  220 (275)
T ss_pred             CEEEEEeCC-ceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEe-CCceEEEEe--cceEEEEcCCCCc-C---
Confidence            566666644 4888999877654443211             12333333 345555543  3333344443321 1   


Q ss_pred             cCceeeeeecccCcCeEEEEecCCCEEEEeCCCCcEEEEeCCCCcEEEEEecc
Q 014475          257 YGMHIIGSLSDHSKAVTCLAYSTGDLLISGSEDGMVRVWDPITHNIVRMFRLA  309 (424)
Q Consensus       257 ~~~~~~~~~~~~~~~i~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~  309 (424)
                         + ...+. -...+.++++. ..+|+..+.+ .|.||++.++++++++...
T Consensus       221 ---r-~~~i~-W~~~p~~~~~~-~pyli~~~~~-~iEV~~~~~~~lvQ~i~~~  266 (275)
T PF00780_consen  221 ---R-KSTIQ-WSSAPQSVAYS-SPYLIAFSSN-SIEVRSLETGELVQTIPLP  266 (275)
T ss_pred             ---c-ccEEE-cCCchhEEEEE-CCEEEEECCC-EEEEEECcCCcEEEEEECC
Confidence               0 11111 12345566664 4577776654 4999999999999998754

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=98.25  E-value=0.00023  Score=66.08  Aligned_cols=107  Identities=20%  Similarity=0.204  Sum_probs=86.7

Q ss_pred             eecCCCccccCCCCceeEEEEECCCCceeeeec--CCCCeeEEEECCCCCEEEEecCCCcEEEEEccCcceee-----ee
Q 014475           46 FLASSQLREQPSASSGSILYWSWSKPQVEVKSL--PAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLK-----KW  118 (424)
Q Consensus        46 ~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~-----~~  118 (424)
                      +...+++++.|++. |.+.+++-..++......  ..+.+..+..|++..++|+|+..|.|.++-+..+....     ..
T Consensus        41 ~dst~~~l~~GsS~-G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~t~~  119 (726)
T KOG3621|consen   41 VDATEEYLAMGSSA-GSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDYVTPC  119 (726)
T ss_pred             eecCCceEEEeccc-ceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcceeeccc
Confidence            66899999999998 999999988776654433  45566777789999999999999999999887642211     11


Q ss_pred             -ccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCc
Q 014475          119 -HAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLT  153 (424)
Q Consensus       119 -~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~  153 (424)
                       +.|...|++++|++++..+.+|...|+|.+-.+..
T Consensus       120 d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s  155 (726)
T KOG3621|consen  120 DKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS  155 (726)
T ss_pred             cccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence             23778999999999999999999999999988855

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=98.24  E-value=0.00065  Score=60.60  Aligned_cols=216  Identities=16%  Similarity=0.200  Sum_probs=126.5

Q ss_pred             CceEEEeCCCCceEEEeeCCCCCCCceEEecc-eeecC----CCccccCCC-----C----ceeEEEEECCCC-----ce
Q 014475           13 TGIGCWDLESGAEQLRYKSCASPPHGLACVGQ-RFLAS----SQLREQPSA-----S----SGSILYWSWSKP-----QV   73 (424)
Q Consensus        13 g~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~----~~~l~~~~~-----~----~g~i~vwd~~~~-----~~   73 (424)
                      +.|+|.|..+.+.+.++.-..  ...+.++.. .+..+    ..++++|..     +    .|.|.++++...     +.
T Consensus         2 s~i~l~d~~~~~~~~~~~l~~--~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l   79 (321)
T PF03178_consen    2 SSIRLVDPTTFEVLDSFELEP--NEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKL   79 (321)
T ss_dssp             -EEEEEETTTSSEEEEEEEET--TEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EE
T ss_pred             cEEEEEeCCCCeEEEEEECCC--CceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEE
Confidence            357888888887776654332  233444431 13332    456665532     1    199999999884     22


Q ss_pred             e--eeecCCCCeeEEEECCCCCEEEEecCCCcEEEEEccCcc-eeeeec-cccCCeEEEEEccCCcEEEEeeCCCcEEEE
Q 014475           74 E--VKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGR-LLKKWH-AHYRAVTCLVFSEDGSFLISGSEDGCVRIW  149 (424)
Q Consensus        74 ~--~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~-~~~~~~-~~~~~i~~~~~~~~~~~l~s~~~dg~i~iw  149 (424)
                      .  ......++|++++-- ++. |+++. .+.|.+|++...+ ....-. .....+.++...  +++++.|.....+.++
T Consensus        80 ~~i~~~~~~g~V~ai~~~-~~~-lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~sv~~~  154 (321)
T PF03178_consen   80 KLIHSTEVKGPVTAICSF-NGR-LVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF--KNYILVGDAMKSVSLL  154 (321)
T ss_dssp             EEEEEEEESS-EEEEEEE-TTE-EEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--TTEEEEEESSSSEEEE
T ss_pred             EEEEEEeecCcceEhhhh-CCE-EEEee-cCEEEEEEccCcccchhhheecceEEEEEEecc--ccEEEEEEcccCEEEE
Confidence            2  223357899999876 444 44443 4689999998877 333222 122356666665  5689999888888888


Q ss_pred             eCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCC-------Cc----eeeeeecC
Q 014475          150 SLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLK-------GR----LLRNIVFP  218 (424)
Q Consensus       150 d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~-------~~----~~~~~~~~  218 (424)
                      ..+..        ........-......++++.+-.++  +.++.+..+|.+.++....       +.    ....+..+
T Consensus       155 ~~~~~--------~~~l~~va~d~~~~~v~~~~~l~d~--~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg  224 (321)
T PF03178_consen  155 RYDEE--------NNKLILVARDYQPRWVTAAEFLVDE--DTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLG  224 (321)
T ss_dssp             EEETT--------TE-EEEEEEESS-BEEEEEEEE-SS--SEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-S
T ss_pred             EEEcc--------CCEEEEEEecCCCccEEEEEEecCC--cEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEECC
Confidence            55320        1111112223345668888888776  5899999999999988752       11    23444467


Q ss_pred             cceeEE---EECCC--CC------EEEEEeCCCcEEEE
Q 014475          219 SVIDAI---ALDPA--EH------VFYAGSRDGSIYIA  245 (424)
Q Consensus       219 ~~i~~~---~~~~~--~~------~l~~~~~dg~i~i~  245 (424)
                      ..|+++   ++.|.  +.      .++.++.+|.|...
T Consensus       225 ~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l  262 (321)
T PF03178_consen  225 DIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGVL  262 (321)
T ss_dssp             S-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred             CccceEEEEEeeecCCCCcccccceEEEEecCCEEEEE
Confidence            788888   55552  22      47888899988843

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.22  E-value=0.00077  Score=60.92  Aligned_cols=249  Identities=12%  Similarity=0.079  Sum_probs=130.7

Q ss_pred             CCceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCceeeeecC------------
Q 014475           12 DTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSLP------------   79 (424)
Q Consensus        12 dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~~~~------------   79 (424)
                      .+.+.|+|+++++.......    ...+....  |+|+|+.++....  +.|.+++..++........            
T Consensus        22 ~~~y~i~d~~~~~~~~l~~~----~~~~~~~~--~sP~g~~~~~v~~--~nly~~~~~~~~~~~lT~dg~~~i~nG~~dw   93 (353)
T PF00930_consen   22 KGDYYIYDIETGEITPLTPP----PPKLQDAK--WSPDGKYIAFVRD--NNLYLRDLATGQETQLTTDGEPGIYNGVPDW   93 (353)
T ss_dssp             EEEEEEEETTTTEEEESS-E----ETTBSEEE--E-SSSTEEEEEET--TEEEEESSTTSEEEESES--TTTEEESB--H
T ss_pred             ceeEEEEecCCCceEECcCC----ccccccce--eecCCCeeEEEec--CceEEEECCCCCeEEeccccceeEEcCccce
Confidence            46788999998765543322    23455555  9999999998875  7899999876643322211            


Q ss_pred             ------CCCeeEEEECCCCCEEEEecCC-Cc-----------------------------------EEEEEccCcceee-
Q 014475           80 ------AEPIKPIAANSHGTYIAGGGQS-GD-----------------------------------IYMWEVASGRLLK-  116 (424)
Q Consensus        80 ------~~~v~~~~~s~~~~~l~~~~~d-g~-----------------------------------v~iwd~~~~~~~~-  116 (424)
                            -+.-..+.||||+++||....| ..                                   +.|+|+.+++... 
T Consensus        94 vyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~  173 (353)
T PF00930_consen   94 VYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTEL  173 (353)
T ss_dssp             HHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE
T ss_pred             eccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEe
Confidence                  1234688899999998865322 11                                   3445555554321 


Q ss_pred             ee----ccccCCeEEEEEccCCcEEEEe--eCCC---cEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEE-Ec
Q 014475          117 KW----HAHYRAVTCLVFSEDGSFLISG--SEDG---CVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIG-YG  186 (424)
Q Consensus       117 ~~----~~~~~~i~~~~~~~~~~~l~s~--~~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~  186 (424)
                      ..    ..-...+..+.|.++++.|+..  ..+.   .+.++|..++......       .....+.-..-....+. ++
T Consensus       174 ~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~-------~e~~~~Wv~~~~~~~~~~~~  246 (353)
T PF00930_consen  174 DPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVL-------EETSDGWVDVYDPPHFLGPD  246 (353)
T ss_dssp             ---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEE-------EEESSSSSSSSSEEEE-TTT
T ss_pred             eeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEE-------EecCCcceeeecccccccCC
Confidence            11    1234457888999988844433  2222   3556666542211110       11111111222234444 44


Q ss_pred             CceeEEEEEeCCCcEEE--EecCCCceeeeeecCccee-EEEECCCCCEEE-EEeCCC----cEEEEEcC-CCCCCCCCc
Q 014475          187 GVSATIVSASEDRTCKV--WSLLKGRLLRNIVFPSVID-AIALDPAEHVFY-AGSRDG----SIYIAALN-AESPSTSSY  257 (424)
Q Consensus       187 ~~~~~l~~~~~d~~v~i--wd~~~~~~~~~~~~~~~i~-~~~~~~~~~~l~-~~~~dg----~i~i~d~~-~~~~~~~~~  257 (424)
                      +. .++.....+|.-+|  ++...+.........-.|. -+.++++++.++ ++..++    .++..++. .+       
T Consensus       247 ~~-~~l~~s~~~G~~hly~~~~~~~~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~-------  318 (353)
T PF00930_consen  247 GN-EFLWISERDGYRHLYLYDLDGGKPRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGG-------  318 (353)
T ss_dssp             SS-EEEEEEETTSSEEEEEEETTSSEEEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETT-------
T ss_pred             CC-EEEEEEEcCCCcEEEEEcccccceeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCC-------
Confidence            43 66666667876554  5555555332222455564 467788766554 454422    45555555 32       


Q ss_pred             CceeeeeecccCcCeEEEEecC-CCEEEEe
Q 014475          258 GMHIIGSLSDHSKAVTCLAYST-GDLLISG  286 (424)
Q Consensus       258 ~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~  286 (424)
                         ....+......-..+.|+| +++++-.
T Consensus       319 ---~~~~LT~~~~~~~~~~~Spdg~y~v~~  345 (353)
T PF00930_consen  319 ---EPKCLTCEDGDHYSASFSPDGKYYVDT  345 (353)
T ss_dssp             ---EEEESSTTSSTTEEEEE-TTSSEEEEE
T ss_pred             ---CeEeccCCCCCceEEEECCCCCEEEEE
Confidence               2233332222226889999 7766643

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=98.19  E-value=0.0002  Score=69.39  Aligned_cols=139  Identities=14%  Similarity=0.180  Sum_probs=96.8

Q ss_pred             EEEeecCCCCCceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCC-------CccccCCCCceeEEEEECCCCc--e
Q 014475            3 LLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASS-------QLREQPSASSGSILYWSWSKPQ--V   73 (424)
Q Consensus         3 ~~lat~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-------~~l~~~~~~~g~i~vwd~~~~~--~   73 (424)
                      .+|.... ....|+--|++.|+.+..++.+...+  |..    +.|+.       ...+.|-.+ +.+..||.+-..  +
T Consensus       495 mil~~~~-~~~~ly~mDLe~GKVV~eW~~~~~~~--v~~----~~p~~K~aqlt~e~tflGls~-n~lfriDpR~~~~k~  566 (794)
T PF08553_consen  495 MILLDPN-NPNKLYKMDLERGKVVEEWKVHDDIP--VVD----IAPDSKFAQLTNEQTFLGLSD-NSLFRIDPRLSGNKL  566 (794)
T ss_pred             eEeecCC-CCCceEEEecCCCcEEEEeecCCCcc--eeE----ecccccccccCCCceEEEECC-CceEEeccCCCCCce
Confidence            3455555 66889999999999999998765322  444    33432       222334343 889999987532  2


Q ss_pred             eeee----cCCCCeeEEEECCCCCEEEEecCCCcEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEE
Q 014475           74 EVKS----LPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIW  149 (424)
Q Consensus        74 ~~~~----~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iw  149 (424)
                      ....    .......|++-+.+| +||+|+.+|.|++||--..+....+++-..+|..|..+.||+++++.+. ..|.++
T Consensus       567 v~~~~k~Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~-tyLlLi  644 (794)
T PF08553_consen  567 VDSQSKQYSSKNNFSCFATTEDG-YIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATCK-TYLLLI  644 (794)
T ss_pred             eeccccccccCCCceEEEecCCc-eEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEeec-ceEEEE
Confidence            2111    234577888888777 6999999999999994333334455677899999999999999887665 477787


Q ss_pred             eC
Q 014475          150 SL  151 (424)
Q Consensus       150 d~  151 (424)
                      +.
T Consensus       645 ~t  646 (794)
T PF08553_consen  645 DT  646 (794)
T ss_pred             EE
Confidence            75

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.18  E-value=0.00035  Score=64.17  Aligned_cols=215  Identities=12%  Similarity=0.061  Sum_probs=108.5

Q ss_pred             eEEecceeecCCCccccCCCCceeEEEEECCCCceeeeecCCCCeeEEEECCCCCEEEEecCCCcEEEEEccCcceeeee
Q 014475           39 LACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKW  118 (424)
Q Consensus        39 v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~  118 (424)
                      ...+.  ++|+|+.+++++.  |.-.++.....+.    ...+.-....|.+.++ +|+-...+.|.|+.--+.+....+
T Consensus        35 p~~ls--~npngr~v~V~g~--geY~iyt~~~~r~----k~~G~g~~~vw~~~n~-yAv~~~~~~I~I~kn~~~~~~k~i  105 (443)
T PF04053_consen   35 PQSLS--HNPNGRFVLVCGD--GEYEIYTALAWRN----KAFGSGLSFVWSSRNR-YAVLESSSTIKIYKNFKNEVVKSI  105 (443)
T ss_dssp             -SEEE--E-TTSSEEEEEET--TEEEEEETTTTEE----EEEEE-SEEEE-TSSE-EEEE-TTS-EEEEETTEE-TT---
T ss_pred             CeeEE--ECCCCCEEEEEcC--CEEEEEEccCCcc----cccCceeEEEEecCcc-EEEEECCCeEEEEEcCccccceEE
Confidence            44555  9999999999554  7888887333222    1234556778888555 566566788999743333333344


Q ss_pred             ccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCC
Q 014475          119 HAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASED  198 (424)
Q Consensus       119 ~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d  198 (424)
                      +.. ..+..+-.   |..|+..+.+ .|.+||+++           ...+..+...  +|..+.|++++  .+++..+.+
T Consensus       106 ~~~-~~~~~If~---G~LL~~~~~~-~i~~yDw~~-----------~~~i~~i~v~--~vk~V~Ws~~g--~~val~t~~  165 (443)
T PF04053_consen  106 KLP-FSVEKIFG---GNLLGVKSSD-FICFYDWET-----------GKLIRRIDVS--AVKYVIWSDDG--ELVALVTKD  165 (443)
T ss_dssp             --S-S-EEEEE----SSSEEEEETT-EEEEE-TTT-------------EEEEESS---E-EEEEE-TTS--SEEEEE-S-
T ss_pred             cCC-cccceEEc---CcEEEEECCC-CEEEEEhhH-----------cceeeEEecC--CCcEEEEECCC--CEEEEEeCC
Confidence            322 22444433   7777776654 899999965           3445555533  48899999998  777777754


Q ss_pred             CcEEEEecCCC-----------ceeeeee-cCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeec
Q 014475          199 RTCKVWSLLKG-----------RLLRNIV-FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLS  266 (424)
Q Consensus       199 ~~v~iwd~~~~-----------~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~  266 (424)
                       .+.+++.+..           .....+. ....|.+.+|..+  .++-.+.. .+..  +-.+.          ...+.
T Consensus       166 -~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d--~fiYtT~~-~lkY--l~~Ge----------~~~i~  229 (443)
T PF04053_consen  166 -SIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED--CFIYTTSN-HLKY--LVNGE----------TGIIA  229 (443)
T ss_dssp             -SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT--EEEEE-TT-EEEE--EETTE----------EEEEE
T ss_pred             -eEEEEEecchhcccccccCchhceEEEEEecceeEEEEEEcC--EEEEEcCC-eEEE--EEcCC----------cceEE
Confidence             6777775433           0233333 3678888899765  33333333 5554  33332          12222


Q ss_pred             ccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCC
Q 014475          267 DHSKAVTCLAYST-GDLLISGSEDGMVRVWDPI  298 (424)
Q Consensus       267 ~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~  298 (424)
                      .-..++.-+.+.+ .+.+.....|+.|..+.+.
T Consensus       230 ~ld~~~yllgy~~~~~~ly~~Dr~~~v~~~~ld  262 (443)
T PF04053_consen  230 HLDKPLYLLGYLPKENRLYLIDRDGNVISYELD  262 (443)
T ss_dssp             E-SS--EEEEEETTTTEEEEE-TT--EEEEE--
T ss_pred             EcCCceEEEEEEccCCEEEEEECCCCEEEEEEC
Confidence            2234555556666 5667777777777777654

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=98.18  E-value=0.00083  Score=59.91  Aligned_cols=220  Identities=17%  Similarity=0.229  Sum_probs=124.8

Q ss_pred             CcEEEEEccCcceeeeeccc-cCCeEEEE---EccC----CcEEEEeeC----------CCcEEEEeCCcccchhccccc
Q 014475          102 GDIYMWEVASGRLLKKWHAH-YRAVTCLV---FSED----GSFLISGSE----------DGCVRIWSLLTVFEECESQRA  163 (424)
Q Consensus       102 g~v~iwd~~~~~~~~~~~~~-~~~i~~~~---~~~~----~~~l~s~~~----------dg~i~iwd~~~~~~~~~~~~~  163 (424)
                      ..|++.|..+.+.+..+.-. ...+.+++   +..+    ..++++|+.          .|.|.++++.+..    ....
T Consensus         2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~----~~~~   77 (321)
T PF03178_consen    2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESP----ENNF   77 (321)
T ss_dssp             -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS---------
T ss_pred             cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEccc----ccce
Confidence            35888888888777655322 23344444   3322    467777653          2899999996630    0001


Q ss_pred             ccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCc-eeeeeecCcceeEEEECCCCCEEEEEeCCCcE
Q 014475          164 SHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGR-LLRNIVFPSVIDAIALDPAEHVFYAGSRDGSI  242 (424)
Q Consensus       164 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~-~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i  242 (424)
                      +...+. .....++|++++-. .+  . ++.+. ++.|.+|++...+ ....-....++...+....++++++|.....+
T Consensus        78 ~l~~i~-~~~~~g~V~ai~~~-~~--~-lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~~~~I~vgD~~~sv  151 (321)
T PF03178_consen   78 KLKLIH-STEVKGPVTAICSF-NG--R-LVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVFKNYILVGDAMKSV  151 (321)
T ss_dssp             EEEEEE-EEEESS-EEEEEEE-TT--E-EEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEETTEEEEEESSSSE
T ss_pred             EEEEEE-EEeecCcceEhhhh-CC--E-EEEee-cCEEEEEEccCcccchhhheecceEEEEEEeccccEEEEEEcccCE
Confidence            111222 23357888888766 32  4 44444 4789999998887 55544444444444444557799999998889


Q ss_pred             EEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCC-------C--cEEEEEecc-CC
Q 014475          243 YIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPIT-------H--NIVRMFRLA-KG  311 (424)
Q Consensus       243 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~-------~--~~~~~~~~~-~~  311 (424)
                      .++..+....     ....+.. ......++++.+-+ ++.++.++.+|.+.++....       +  +......-| ..
T Consensus       152 ~~~~~~~~~~-----~l~~va~-d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~  225 (321)
T PF03178_consen  152 SLLRYDEENN-----KLILVAR-DYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGD  225 (321)
T ss_dssp             EEEEEETTTE------EEEEEE-ESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS
T ss_pred             EEEEEEccCC-----EEEEEEe-cCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEECCC
Confidence            9886655320     0122221 12345688888874 56999999999999998762       2  222222223 34


Q ss_pred             CeeEE---EEEec--C------ceeeeccCCCceeec
Q 014475          312 PVNNI---LVVRR--P------LYLNLGSFSNPHTSS  337 (424)
Q Consensus       312 ~v~~l---~~s~~--~------~~l~~~~~d~~i~iw  337 (424)
                      .|+++   .+.|.  +      ..++.++.+|.|..-
T Consensus       226 ~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l  262 (321)
T PF03178_consen  226 IVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGVL  262 (321)
T ss_dssp             -EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred             ccceEEEEEeeecCCCCcccccceEEEEecCCEEEEE
Confidence            66766   44441  2      237777788887733

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=98.17  E-value=0.0029  Score=58.14  Aligned_cols=197  Identities=19%  Similarity=0.208  Sum_probs=104.8

Q ss_pred             cEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEE
Q 014475          103 DIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIV  182 (424)
Q Consensus       103 ~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  182 (424)
                      .|.||+. .|+.+.++.-..+.+.++.|..+. .|++-..||.++++|+.... ...    -...+....-....+....
T Consensus        62 ~I~iys~-sG~ll~~i~w~~~~iv~~~wt~~e-~LvvV~~dG~v~vy~~~G~~-~fs----l~~~i~~~~v~e~~i~~~~  134 (410)
T PF04841_consen   62 SIQIYSS-SGKLLSSIPWDSGRIVGMGWTDDE-ELVVVQSDGTVRVYDLFGEF-QFS----LGEEIEEEKVLECRIFAIW  134 (410)
T ss_pred             EEEEECC-CCCEeEEEEECCCCEEEEEECCCC-eEEEEEcCCEEEEEeCCCce-eec----hhhhccccCcccccccccc
Confidence            4888884 677777665444899999999755 46666789999999985321 000    0001111111112222222


Q ss_pred             EEEcCceeEEEEEeCCCcEEEEecCCCc-eeeeee-cCccee---------E-EEECCCCCEEEEEeCCCcEEEEEcCCC
Q 014475          183 IGYGGVSATIVSASEDRTCKVWSLLKGR-LLRNIV-FPSVID---------A-IALDPAEHVFYAGSRDGSIYIAALNAE  250 (424)
Q Consensus       183 ~~~~~~~~~l~~~~~d~~v~iwd~~~~~-~~~~~~-~~~~i~---------~-~~~~~~~~~l~~~~~dg~i~i~d~~~~  250 (424)
                      +...|    ++.-..++.+.+.+-.... ..+.+. .+....         . ..++.+....+....++.+.+.+-...
T Consensus       135 ~~~~G----ivvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~  210 (410)
T PF04841_consen  135 FYKNG----IVVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSF  210 (410)
T ss_pred             cCCCC----EEEECCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccc
Confidence            22222    2222334444433221111 111111 111000         0 223334444444445555554443321


Q ss_pred             CCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCCCcEEEEEecc-CCCeeEEEEEecCc
Q 014475          251 SPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLA-KGPVNNILVVRRPL  323 (424)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~-~~~v~~l~~s~~~~  323 (424)
                      .            .+ ...+++..|+.|| ++++|.-..+|.+.+.+..-.+.+..+... ..+...+.|.-+..
T Consensus       211 ~------------~i-~~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~da  272 (410)
T PF04841_consen  211 K------------QI-DSDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGNDA  272 (410)
T ss_pred             c------------cc-cCCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECCCc
Confidence            1            01 1246899999999 999999999999999987766666666644 34566777776543

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=98.16  E-value=0.0044  Score=54.87  Aligned_cols=296  Identities=9%  Similarity=0.005  Sum_probs=132.6

Q ss_pred             EeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCCCc--eeEEEEECCCCceeeeecCC-CCeeEEEECCCCCE
Q 014475           18 WDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASS--GSILYWSWSKPQVEVKSLPA-EPIKPIAANSHGTY   94 (424)
Q Consensus        18 wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~--g~i~vwd~~~~~~~~~~~~~-~~v~~~~~s~~~~~   94 (424)
                      -|..||..+..+.....+......-...|.++|+.|+.++..+  ..+.+.|+.+++........ ........+|+.+.
T Consensus        15 ~D~~TG~~VtrLT~~~~~~h~~YF~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~   94 (386)
T PF14583_consen   15 IDPDTGHRVTRLTPPDGHSHRLYFYQNCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRA   94 (386)
T ss_dssp             E-TTT--EEEE-S-TTS-EE---TTS--B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSE
T ss_pred             eCCCCCceEEEecCCCCcccceeecCCCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCe
Confidence            3667888888776555433333333344889998877766533  46677778888776554432 33445677888888


Q ss_pred             EEEecCCCcEEEEEccCcceeeeeccccCCeEEEEEcc--CCcEEEEeeCC----------------------CcEEEEe
Q 014475           95 IAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSE--DGSFLISGSED----------------------GCVRIWS  150 (424)
Q Consensus        95 l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~--~~~~l~s~~~d----------------------g~i~iwd  150 (424)
                      ++.......|.-.|+++.+....+......+-...|..  ++..++-.-..                      ..|.--|
T Consensus        95 ~~Yv~~~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~id  174 (386)
T PF14583_consen   95 LYYVKNGRSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTID  174 (386)
T ss_dssp             EEEEETTTEEEEEETTT--EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEE
T ss_pred             EEEEECCCeEEEEECCcCcEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEE
Confidence            77655556899999999877666665555555566642  45444322111                      1122222


Q ss_pred             CCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeC---CCc-EEEEecCC-Cceeeeee---cCccee
Q 014475          151 LLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASE---DRT-CKVWSLLK-GRLLRNIV---FPSVID  222 (424)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~---d~~-v~iwd~~~-~~~~~~~~---~~~~i~  222 (424)
                      +.++            ....+..-...+..+.++|..+ ..|+.|-+   +.. -+||-+++ +...+.+.   ....+.
T Consensus       175 l~tG------------~~~~v~~~~~wlgH~~fsP~dp-~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~g  241 (386)
T PF14583_consen  175 LKTG------------ERKVVFEDTDWLGHVQFSPTDP-TLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVG  241 (386)
T ss_dssp             TTT--------------EEEEEEESS-EEEEEEETTEE-EEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEE
T ss_pred             CCCC------------ceeEEEecCccccCcccCCCCC-CEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccc
Confidence            2221            1122222344566777888763 45555443   221 36665543 22222222   234455


Q ss_pred             EEEECCCCCEEEEEe--C---CCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCC-------
Q 014475          223 AIALDPAEHVFYAGS--R---DGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSED-------  289 (424)
Q Consensus       223 ~~~~~~~~~~l~~~~--~---dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~d-------  289 (424)
                      .=-|.|+|..+.--+  .   +..|.-+|..+...       ..+...    .+......++ +.+++-=+.|       
T Consensus       242 HEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~-------~~~~~~----p~~~H~~ss~Dg~L~vGDG~d~p~~v~~  310 (386)
T PF14583_consen  242 HEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGER-------RRLMEM----PWCSHFMSSPDGKLFVGDGGDAPVDVAD  310 (386)
T ss_dssp             EEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--E-------EEEEEE-----SEEEEEE-TTSSEEEEEE---------
T ss_pred             cccccCCCCEEEEEeecCCCCceEEEeeCCCCCCc-------eEEEeC----CceeeeEEcCCCCEEEecCCCCCccccc
Confidence            556899988765422  2   23455666666431       111111    1223334445 5555433332       


Q ss_pred             ---------CcEEEEeCCCCcEEEEEeccC----------C-CeeEEEEEecCceeee-ccCCCceeecc
Q 014475          290 ---------GMVRVWDPITHNIVRMFRLAK----------G-PVNNILVVRRPLYLNL-GSFSNPHTSSR  338 (424)
Q Consensus       290 ---------g~i~iwd~~~~~~~~~~~~~~----------~-~v~~l~~s~~~~~l~~-~~~d~~i~iw~  338 (424)
                               -.|+++++..++... +..|.          . .=....|+||+++++- +...|...++-
T Consensus       311 ~~~~~~~~~p~i~~~~~~~~~~~~-l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY~  379 (386)
T PF14583_consen  311 AGGYKIENDPWIYLFDVEAGRFRK-LARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSDMEGPPAVYL  379 (386)
T ss_dssp             ----------EEEEEETTTTEEEE-EEE-------BTTBSSTT----EE-TTSSEEEEEE-TTSS-EEEE
T ss_pred             cccceecCCcEEEEeccccCceee-eeeccCcceeecCCCccCCCCCccCCCCCEEEEECCCCCCccEEE
Confidence                     156678887765432 22121          1 1256799999998765 44566555543

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=98.14  E-value=0.00027  Score=64.60  Aligned_cols=178  Identities=17%  Similarity=0.140  Sum_probs=111.9

Q ss_pred             eecCCCccccCCCCc---eeEEEEECCCCceeeeecCCCCeeEEEECCCCCEEEEe-cCCCc--EEEEEccCcceeeeec
Q 014475           46 FLASSQLREQPSASS---GSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGG-GQSGD--IYMWEVASGRLLKKWH  119 (424)
Q Consensus        46 ~~~~~~~l~~~~~~~---g~i~vwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg~--v~iwd~~~~~~~~~~~  119 (424)
                      |+|+++.++......   ..+.++++++++........+.-..-+|+|||+.|+.. ..||.  |+++|+..+...+ +.
T Consensus       200 ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~~-Lt  278 (425)
T COG0823         200 WSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLPR-LT  278 (425)
T ss_pred             cCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCccCCccCCCCCCEEEEEECCCCCccEEEEcCCCCccee-cc
Confidence            999999877653222   35999999988776665566677788999999988765 44554  7777877766333 44


Q ss_pred             cccCCeEEEEEccCCcEEEEee-CCCc--EEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEe
Q 014475          120 AHYRAVTCLVFSEDGSFLISGS-EDGC--VRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSAS  196 (424)
Q Consensus       120 ~~~~~i~~~~~~~~~~~l~s~~-~dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~  196 (424)
                      ...+.-..=.|+|||+.++-.+ ..|.  |.+.+.+..          ..  ..+......-..-.|+|++  ++++..+
T Consensus       279 ~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~----------~~--~riT~~~~~~~~p~~SpdG--~~i~~~~  344 (425)
T COG0823         279 NGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGS----------QV--TRLTFSGGGNSNPVWSPDG--DKIVFES  344 (425)
T ss_pred             cCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCC----------ce--eEeeccCCCCcCccCCCCC--CEEEEEe
Confidence            3333334677999999887554 4454  455555431          11  1222222222256788998  5655555


Q ss_pred             C-CCc--EEEEecCCCceeeeeecCcceeEEEECCCCCEEEEEeC
Q 014475          197 E-DRT--CKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSR  238 (424)
Q Consensus       197 ~-d~~--v~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~  238 (424)
                      . +|.  |.+.|+.++...+.+........-.+.|+++.++..+.
T Consensus       345 ~~~g~~~i~~~~~~~~~~~~~lt~~~~~e~ps~~~ng~~i~~~s~  389 (425)
T COG0823         345 SSGGQWDIDKNDLASGGKIRILTSTYLNESPSWAPNGRMIMFSSG  389 (425)
T ss_pred             ccCCceeeEEeccCCCCcEEEccccccCCCCCcCCCCceEEEecc
Confidence            3 344  66677766665555556666666778888887765543

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=98.12  E-value=0.0067  Score=55.35  Aligned_cols=278  Identities=15%  Similarity=0.151  Sum_probs=174.6

Q ss_pred             eEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCceeeeecCC-CCeeEEEECCCCC
Q 014475           15 IGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSLPA-EPIKPIAANSHGT   93 (424)
Q Consensus        15 i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~~~~~-~~v~~~~~s~~~~   93 (424)
                      +.+++..+......+.... .+.++.     +.+++..+.++......+..-+............. ..-..++.++.++
T Consensus        13 ~~v~~~~~~~~~~~~~~~~-~~~~v~-----~~~~g~~~~v~~~~~~~~~~~~~~~n~~~~~~~~g~~~p~~i~v~~~~~   86 (381)
T COG3391          13 VSVINTGTNKVTAAISLGR-GPGGVA-----VNPDGTQVYVANSGSNDVSVIDATSNTVTQSLSVGGVYPAGVAVNPAGN   86 (381)
T ss_pred             eEEEeecccEEEEEeecCC-CCceeE-----EcCccCEEEEEeecCceeeecccccceeeeeccCCCccccceeeCCCCC
Confidence            7788877777666665443 223333     67777554444332134444444422222211111 3456778888887


Q ss_pred             EE-EEecCCCcEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEeeC---CCcEEEEeCCcccchhcccccccceEE
Q 014475           94 YI-AGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSE---DGCVRIWSLLTVFEECESQRASHLYLH  169 (424)
Q Consensus        94 ~l-~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~  169 (424)
                      .+ +....++.|.+.|..+.+......... ....+.++|+++.+.++..   ++.+.+.|-.+           .....
T Consensus        87 ~vyv~~~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t-----------~~~~~  154 (381)
T COG3391          87 KVYVTTGDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAAT-----------NKVTA  154 (381)
T ss_pred             eEEEecCCCCeEEEEcCcccceeeEeeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCC-----------CeEEE
Confidence            44 444456889999987777776664333 5678999999977766655   57788888754           22233


Q ss_pred             eecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceee-----eeecCcceeEEEECCCCCEEEEEeCC---Cc
Q 014475          170 SFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLR-----NIVFPSVIDAIALDPAEHVFYAGSRD---GS  241 (424)
Q Consensus       170 ~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~-----~~~~~~~i~~~~~~~~~~~l~~~~~d---g~  241 (424)
                      ....-..+ ..+++.|++. ...++-..++.+.+.|........     ..........+.++|++..+++....   +.
T Consensus       155 ~~~vG~~P-~~~a~~p~g~-~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~  232 (381)
T COG3391         155 TIPVGNTP-TGVAVDPDGN-KVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNN  232 (381)
T ss_pred             EEecCCCc-ceEEECCCCC-eEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCce
Confidence            33322234 7889999983 344455578999999977665553     23344556788999999977776544   58


Q ss_pred             EEEEEcCCCCCCCCCcCceeeee-ec-ccCcCeEEEEecC-CCEEEEe-CCCCcEEEEeCCCCcEEEEEeccCC---Cee
Q 014475          242 IYIAALNAESPSTSSYGMHIIGS-LS-DHSKAVTCLAYST-GDLLISG-SEDGMVRVWDPITHNIVRMFRLAKG---PVN  314 (424)
Q Consensus       242 i~i~d~~~~~~~~~~~~~~~~~~-~~-~~~~~i~~~~~~~-~~~l~t~-~~dg~i~iwd~~~~~~~~~~~~~~~---~v~  314 (424)
                      +...|...+.         .... .. +.. ....+..+| +..+.+. +..+.+.+-|..+......+.....   .+.
T Consensus       233 v~~id~~~~~---------v~~~~~~~~~~-~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~~~~~~~~~~~  302 (381)
T COG3391         233 VLKIDTATGN---------VTATDLPVGSG-APRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGPTGNEALGEPV  302 (381)
T ss_pred             EEEEeCCCce---------EEEeccccccC-CCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeecccccccccce
Confidence            8888888863         1221 11 111 455678889 7777776 4558899999998888877664433   456


Q ss_pred             EEEEEecC
Q 014475          315 NILVVRRP  322 (424)
Q Consensus       315 ~l~~s~~~  322 (424)
                      .+++.+..
T Consensus       303 ~~~~~~~~  310 (381)
T COG3391         303 SIAISPLY  310 (381)
T ss_pred             eccceeec
Confidence            66666644

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=98.11  E-value=0.0038  Score=56.93  Aligned_cols=196  Identities=11%  Similarity=0.075  Sum_probs=134.1

Q ss_pred             eecCCCccccCCCCceeEEEEECCCCceeeeecCCCCeeEEEECCCCCEEEEecC---CCcEEEEEccCcceeeeecccc
Q 014475           46 FLASSQLREQPSASSGSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQ---SGDIYMWEVASGRLLKKWHAHY  122 (424)
Q Consensus        46 ~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~---dg~v~iwd~~~~~~~~~~~~~~  122 (424)
                      ..+.+..+.+...+++.|.+.|..................++++|+++.+.++..   ++.+.+.|..+++.+.......
T Consensus        81 v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~  160 (381)
T COG3391          81 VNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGN  160 (381)
T ss_pred             eCCCCCeEEEecCCCCeEEEEcCcccceeeEeeeccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCC
Confidence            6777775555554458999999777666555555557889999999987777655   6889999999988888765444


Q ss_pred             CCeEEEEEccCCcEEEEee-CCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCC--C
Q 014475          123 RAVTCLVFSEDGSFLISGS-EDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASED--R  199 (424)
Q Consensus       123 ~~i~~~~~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d--~  199 (424)
                      .+ ..+++.|+++.+..+. .++.|.+.|........      ........ -...-..+.+.+++. ...++...+  +
T Consensus       161 ~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~------~~~~~~~~-~~~~P~~i~v~~~g~-~~yV~~~~~~~~  231 (381)
T COG3391         161 TP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVR------GSVGSLVG-VGTGPAGIAVDPDGN-RVYVANDGSGSN  231 (381)
T ss_pred             Cc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceec------cccccccc-cCCCCceEEECCCCC-EEEEEeccCCCc
Confidence            44 8999999999666554 68899999975521100      00000111 122334678888884 233333333  6


Q ss_pred             cEEEEecCCCceeee-eecCc-ceeEEEECCCCCEEEEEeCC-CcEEEEEcCCC
Q 014475          200 TCKVWSLLKGRLLRN-IVFPS-VIDAIALDPAEHVFYAGSRD-GSIYIAALNAE  250 (424)
Q Consensus       200 ~v~iwd~~~~~~~~~-~~~~~-~i~~~~~~~~~~~l~~~~~d-g~i~i~d~~~~  250 (424)
                      .+...|..++..... ..... ....+..+|+|..+.+.... +.+.+.|..+.
T Consensus       232 ~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~  285 (381)
T COG3391         232 NVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGATD  285 (381)
T ss_pred             eEEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEecCCCeEEEEeCCCC
Confidence            899999988877665 22222 56778999999999988544 78888888875

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=98.07  E-value=0.0034  Score=54.76  Aligned_cols=209  Identities=15%  Similarity=0.155  Sum_probs=120.8

Q ss_pred             CCCceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCce-eeeec-----CCCCee
Q 014475           11 ADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQV-EVKSL-----PAEPIK   84 (424)
Q Consensus        11 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~-~~~~~-----~~~~v~   84 (424)
                      ..+.|.-||.++|+.. .+...    ..+.+..  ....+..|+++.   ..+.+++.+.+.. .....     .....+
T Consensus        45 ~~~~i~r~~~~~g~~~-~~~~p----~~~~~~~--~~d~~g~Lv~~~---~g~~~~~~~~~~~~t~~~~~~~~~~~~r~N  114 (307)
T COG3386          45 LGGRIHRLDPETGKKR-VFPSP----GGFSSGA--LIDAGGRLIACE---HGVRLLDPDTGGKITLLAEPEDGLPLNRPN  114 (307)
T ss_pred             CCCeEEEecCCcCceE-EEECC----CCcccce--eecCCCeEEEEc---cccEEEeccCCceeEEeccccCCCCcCCCC
Confidence            4567777776655433 22221    1222222  223333444433   3466666654444 21111     234667


Q ss_pred             EEEECCCCCEEEEecC-----------CCcEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEeeC-CCcEEEEeCC
Q 014475           85 PIAANSHGTYIAGGGQ-----------SGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSE-DGCVRIWSLL  152 (424)
Q Consensus        85 ~~~~s~~~~~l~~~~~-----------dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~-dg~i~iwd~~  152 (424)
                      .+...|+|.+.++...           -|.|+.++. .+..++.+..+-..-+.|+|+||++.|..+.. .+.|.-|++.
T Consensus       115 D~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d  193 (307)
T COG3386         115 DGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLD  193 (307)
T ss_pred             ceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecC
Confidence            8889999987776443           133444443 56666666666677789999999987776655 4778888775


Q ss_pred             cccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCC-cEEEEecCCCceeeeeecC-cceeEEEEC-CC
Q 014475          153 TVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDR-TCKVWSLLKGRLLRNIVFP-SVIDAIALD-PA  229 (424)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~-~v~iwd~~~~~~~~~~~~~-~~i~~~~~~-~~  229 (424)
                      ..    .................+..-.++...++  .+-+++..+| .|..|+.+ ++++..+..+ ..+++++|- |+
T Consensus       194 ~~----~g~~~~~~~~~~~~~~~G~PDG~~vDadG--~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~~FgG~~  266 (307)
T COG3386         194 PA----TGPIGGRRGFVDFDEEPGLPDGMAVDADG--NLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNPAFGGPD  266 (307)
T ss_pred             cc----cCccCCcceEEEccCCCCCCCceEEeCCC--CEEEecccCCceEEEECCC-CcEEEEEECCCCCCccceEeCCC
Confidence            30    00011111122233345666677777776  5554444443 89999988 9999999876 778888884 34


Q ss_pred             CCEEEEEe
Q 014475          230 EHVFYAGS  237 (424)
Q Consensus       230 ~~~l~~~~  237 (424)
                      .+.|++.+
T Consensus       267 ~~~L~iTs  274 (307)
T COG3386         267 LNTLYITS  274 (307)
T ss_pred             cCEEEEEe
Confidence            45554444

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=98.03  E-value=0.01  Score=56.49  Aligned_cols=289  Identities=11%  Similarity=0.034  Sum_probs=155.1

Q ss_pred             CccccCCCCceeEEEEECCCCceeeeecCCCC--ee---E-------EEECCCCCEEEEecCCCcEEEEEccCcceeeee
Q 014475           51 QLREQPSASSGSILYWSWSKPQVEVKSLPAEP--IK---P-------IAANSHGTYIAGGGQSGDIYMWEVASGRLLKKW  118 (424)
Q Consensus        51 ~~l~~~~~~~g~i~vwd~~~~~~~~~~~~~~~--v~---~-------~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~  118 (424)
                      ..+.+++.+ +.|.-.|..+++...+.....+  +.   +       +++  .+..++.++.|+.|.-.|.++|+.+...
T Consensus        70 g~vyv~s~~-g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av--~~~~v~v~t~dg~l~ALDa~TGk~~W~~  146 (527)
T TIGR03075        70 GVMYVTTSY-SRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL--YDGKVFFGTLDARLVALDAKTGKVVWSK  146 (527)
T ss_pred             CEEEEECCC-CcEEEEECCCCceeeEecCCCCcccccccccccccccceE--ECCEEEEEcCCCEEEEEECCCCCEEeec
Confidence            344445554 7898899999888776543221  11   1       122  2345777788999999999999988765


Q ss_pred             ccccCC-eEEEEEcc---CCcEEEEeeC------CCcEEEEeCCcccchhcccccccce---------------EEee--
Q 014475          119 HAHYRA-VTCLVFSE---DGSFLISGSE------DGCVRIWSLLTVFEECESQRASHLY---------------LHSF--  171 (424)
Q Consensus       119 ~~~~~~-i~~~~~~~---~~~~l~s~~~------dg~i~iwd~~~~~~~~~~~~~~~~~---------------~~~~--  171 (424)
                      ...... -..+.-+|   ++ .++++..      +|.|.-+|.+++...-.........               ..+.  
T Consensus       147 ~~~~~~~~~~~tssP~v~~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw~~  225 (527)
T TIGR03075       147 KNGDYKAGYTITAAPLVVKG-KVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTWPG  225 (527)
T ss_pred             ccccccccccccCCcEEECC-EEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCCCCC
Confidence            421100 01111122   34 4444432      6889999988866543322111000               0000  


Q ss_pred             ---cCCcCcee-EEEEEEcCceeEEEEEeCC-----C-----------cEEEEecCCCceeeeeec---C-------cce
Q 014475          172 ---TGHTLRIT-DIVIGYGGVSATIVSASED-----R-----------TCKVWSLLKGRLLRNIVF---P-------SVI  221 (424)
Q Consensus       172 ---~~~~~~i~-~~~~~~~~~~~~l~~~~~d-----~-----------~v~iwd~~~~~~~~~~~~---~-------~~i  221 (424)
                         ..-...+. .+.+.+..  .++..+...     +           .|.-.|+++|+....++.   +       ...
T Consensus       226 ~~~~~gg~~~W~~~s~D~~~--~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p  303 (527)
T TIGR03075       226 DAWKTGGGATWGTGSYDPET--NLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEM  303 (527)
T ss_pred             CccccCCCCccCceeEcCCC--CeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCCc
Confidence               00011121 22344433  444444311     2           677789999998887762   1       122


Q ss_pred             eEEEECCCCC---EEEEEeCCCcEEEEEcCCCCCCCCCc-----Cc---------eeee----------------eeccc
Q 014475          222 DAIALDPAEH---VFYAGSRDGSIYIAALNAESPSTSSY-----GM---------HIIG----------------SLSDH  268 (424)
Q Consensus       222 ~~~~~~~~~~---~l~~~~~dg~i~i~d~~~~~~~~~~~-----~~---------~~~~----------------~~~~~  268 (424)
                      .-+.+..+|+   .++.+..+|.+++.|.++++......     .+         .++.                ...+.
T Consensus       304 ~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i~~~~~~~~~~w~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~Pg~  383 (527)
T TIGR03075       304 ILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLLSAEPFVDTVNWATGVDLKTGRPIEVPEARSADGKKGKPVGVCPGF  383 (527)
T ss_pred             EEEEeccCCcEEEEEEEeCCCceEEEEECCCCceeccccccCCcccccccCCCCCCCccChhhCcCCCCCCCeeEECCCC
Confidence            2233334665   77889999999999999886531100     00         0000                00000


Q ss_pred             CcCe--EEEEecC-CCEEEEeCC---------------------------------CCcEEEEeCCCCcEEEEEeccCCC
Q 014475          269 SKAV--TCLAYST-GDLLISGSE---------------------------------DGMVRVWDPITHNIVRMFRLAKGP  312 (424)
Q Consensus       269 ~~~i--~~~~~~~-~~~l~t~~~---------------------------------dg~i~iwd~~~~~~~~~~~~~~~~  312 (424)
                      .+.+  ..++++| ..+++....                                 -|.|.-+|+.+++.+-+.+.....
T Consensus       384 ~Gg~~W~~~A~Dp~~g~~yvp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~~~~g~l~AiD~~tGk~~W~~~~~~p~  463 (527)
T TIGR03075       384 LGGKNWQPMAYSPKTGLFYVPANEVCMDYEPEKVSYKKGAAYLGAGLTIKPPPDDHMGSLIAWDPITGKIVWEHKEDFPL  463 (527)
T ss_pred             cCCCCCCCceECCCCCEEEEecccccccccccccccCCCCceeccccccCCCCCCCceeEEEEeCCCCceeeEecCCCCC
Confidence            0000  1134444 333322211                                 256888899999888776632222


Q ss_pred             eeEEEEEecCceeeeccCCCceeeccCCCCCCCC
Q 014475          313 VNNILVVRRPLYLNLGSFSNPHTSSRRHGSQLPP  346 (424)
Q Consensus       313 v~~l~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~  346 (424)
                      ..+. ..-.+..++.++.||.++.+|.++++..-
T Consensus       464 ~~~~-l~t~g~lvf~g~~~G~l~a~D~~TGe~lw  496 (527)
T TIGR03075       464 WGGV-LATAGDLVFYGTLEGYFKAFDAKTGEELW  496 (527)
T ss_pred             CCcc-eEECCcEEEEECCCCeEEEEECCCCCEeE
Confidence            2222 23355567778889999999999997644

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=97.99  E-value=0.0006  Score=62.42  Aligned_cols=201  Identities=16%  Similarity=0.128  Sum_probs=119.8

Q ss_pred             cEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEee---CC-CcEEEEeCCcccchhcccccccceEEeecCCcCce
Q 014475          103 DIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGS---ED-GCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRI  178 (424)
Q Consensus       103 ~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~---~d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i  178 (424)
                      .+.+-|.. +.....+......+..-.|+|+++.++..+   .. ..+.+++++++         ....+..+.++..  
T Consensus       174 ~l~~~D~d-g~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g---------~~~~i~~~~g~~~--  241 (425)
T COG0823         174 ELALGDYD-GYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTG---------KRPVILNFNGNNG--  241 (425)
T ss_pred             eEEEEccC-CcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCC---------ccceeeccCCccC--
Confidence            34444443 544555555556777788999888765442   22 35899999773         3333334444443  


Q ss_pred             eEEEEEEcCceeEEEEEeCCCc--EEEEecCCCceeeeee-cCcceeEEEECCCCCEEEEEeC-CC--cEEEEEcCCCCC
Q 014475          179 TDIVIGYGGVSATIVSASEDRT--CKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYAGSR-DG--SIYIAALNAESP  252 (424)
Q Consensus       179 ~~~~~~~~~~~~~l~~~~~d~~--v~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~-dg--~i~i~d~~~~~~  252 (424)
                       .-.|+|++. ..+++...||.  |.+.|+..+...+ +. ..+.-..-.|+|+|+.++-.+. .|  .|.+++.+... 
T Consensus       242 -~P~fspDG~-~l~f~~~rdg~~~iy~~dl~~~~~~~-Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~-  317 (425)
T COG0823         242 -APAFSPDGS-KLAFSSSRDGSPDIYLMDLDGKNLPR-LTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQ-  317 (425)
T ss_pred             -CccCCCCCC-EEEEEECCCCCccEEEEcCCCCccee-cccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCc-
Confidence             347999984 66667777776  5556777666433 44 3334446689999998876654 44  46666666543 


Q ss_pred             CCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCC-CCc--EEEEeCCCCcEEEEEeccCCCeeEEEEEecCceeeec
Q 014475          253 STSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSE-DGM--VRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLG  328 (424)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~-dg~--i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~  328 (424)
                               ...+......-..-.|+| |++|+..+. +|.  |.+.|+.++..++.+. .......-.|.+++..+...
T Consensus       318 ---------~~riT~~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt-~~~~~e~ps~~~ng~~i~~~  387 (425)
T COG0823         318 ---------VTRLTFSGGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGKIRILT-STYLNESPSWAPNGRMIMFS  387 (425)
T ss_pred             ---------eeEeeccCCCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCCcEEEcc-ccccCCCCCcCCCCceEEEe
Confidence                     122222222222567888 887777664 344  7777777666544443 33344556777888777654


Q ss_pred             c
Q 014475          329 S  329 (424)
Q Consensus       329 ~  329 (424)
                      +
T Consensus       388 s  388 (425)
T COG0823         388 S  388 (425)
T ss_pred             c
Confidence            4

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.98  E-value=0.00027  Score=63.52  Aligned_cols=141  Identities=11%  Similarity=0.203  Sum_probs=101.3

Q ss_pred             eEEEEEeCCCcEEEEecCCCceeeeeecCcceeEEEECCCCC-------EEEEEeCCCcEEEEEcCCCCCCCCCcCceee
Q 014475          190 ATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEH-------VFYAGSRDGSIYIAALNAESPSTSSYGMHII  262 (424)
Q Consensus       190 ~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~-------~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~  262 (424)
                      -.+.++.....++-.|+..|+.+........|+-+.+.|+.+       .-++|-.+..|.-||.+-...       ..+
T Consensus       347 lil~~~~~~~~l~klDIE~GKIVeEWk~~~di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~-------~kl  419 (644)
T KOG2395|consen  347 LILMDGGEQDKLYKLDIERGKIVEEWKFEDDINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGK-------NKL  419 (644)
T ss_pred             eEeeCCCCcCcceeeecccceeeeEeeccCCcceeeccCCcchhcccccccEEeecCCceEEecccccCc-------cee
Confidence            445566677789999999999999999777788888988653       235677889999999986542       122


Q ss_pred             eeecccC----cCeEEEEecCCCEEEEeCCCCcEEEEeCCCCcEE-EEEeccCCCeeEEEEEecCceeeeccCCCceeec
Q 014475          263 GSLSDHS----KAVTCLAYSTGDLLISGSEDGMVRVWDPITHNIV-RMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSS  337 (424)
Q Consensus       263 ~~~~~~~----~~i~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~-~~~~~~~~~v~~l~~s~~~~~l~~~~~d~~i~iw  337 (424)
                      ...++|.    ....|.+-....++++||.+|.||+||- .+..- .-+++-..+|..+..+.+|++|++.+. ..+.+-
T Consensus       420 ~~~q~kqy~~k~nFsc~aTT~sG~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~-tyLlLi  497 (644)
T KOG2395|consen  420 AVVQSKQYSTKNNFSCFATTESGYIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGKWILATCK-TYLLLI  497 (644)
T ss_pred             eeeeccccccccccceeeecCCceEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCcEEEEecc-cEEEEE
Confidence            2333332    3345555444789999999999999996 45443 446677789999999999999877654 444444


Q ss_pred             cC
Q 014475          338 RR  339 (424)
Q Consensus       338 ~~  339 (424)
                      ++
T Consensus       498 ~t  499 (644)
T KOG2395|consen  498 DT  499 (644)
T ss_pred             EE
Confidence            43

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=97.97  E-value=0.00017  Score=69.95  Aligned_cols=139  Identities=12%  Similarity=0.160  Sum_probs=96.1

Q ss_pred             EeCCCcEEEEecCCCceeeeeecCcceeEEEECCC-------CCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecc
Q 014475          195 ASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPA-------EHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSD  267 (424)
Q Consensus       195 ~~~d~~v~iwd~~~~~~~~~~~~~~~i~~~~~~~~-------~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~  267 (424)
                      ......|+-.|+..|+.+........+.-..+.|+       ....++|-.+..+..||.|-......   ......+ .
T Consensus       500 ~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v---~~~~k~Y-~  575 (794)
T PF08553_consen  500 PNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLV---DSQSKQY-S  575 (794)
T ss_pred             CCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCcee---ecccccc-c
Confidence            34567899999999999999985544434455553       33467788899999999997531100   0001111 2


Q ss_pred             cCcCeEEEEecCCCEEEEeCCCCcEEEEeCCCCcEE-EEEeccCCCeeEEEEEecCceeeeccCCCceeeccC
Q 014475          268 HSKAVTCLAYSTGDLLISGSEDGMVRVWDPITHNIV-RMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRR  339 (424)
Q Consensus       268 ~~~~i~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~-~~~~~~~~~v~~l~~s~~~~~l~~~~~d~~i~iw~~  339 (424)
                      .....+|++-+...+||.|+.+|.||+||- .|+.- ..+.+-..||.+|..+.||++|++.+ +..+.+.+.
T Consensus       576 ~~~~Fs~~aTt~~G~iavgs~~G~IRLyd~-~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc-~tyLlLi~t  646 (794)
T PF08553_consen  576 SKNNFSCFATTEDGYIAVGSNKGDIRLYDR-LGKRAKTALPGLGDPIIGIDVTADGKWILATC-KTYLLLIDT  646 (794)
T ss_pred             cCCCceEEEecCCceEEEEeCCCcEEeecc-cchhhhhcCCCCCCCeeEEEecCCCcEEEEee-cceEEEEEE
Confidence            345677777776889999999999999994 44333 34556678999999999999988765 444555554

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.96  E-value=0.016  Score=53.83  Aligned_cols=237  Identities=10%  Similarity=0.044  Sum_probs=125.4

Q ss_pred             eecCCCccccC----CCCceeEEEEECCCCceeeeecCCCCeeEEEECCCCCEEEEecCCC-----------cEEEEEcc
Q 014475           46 FLASSQLREQP----SASSGSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSG-----------DIYMWEVA  110 (424)
Q Consensus        46 ~~~~~~~l~~~----~~~~g~i~vwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg-----------~v~iwd~~  110 (424)
                      ++|+|+++|.+    |.+...+++.|+++++.............+.|.++++.|+....+.           .|+.|.+.
T Consensus       131 ~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~g  210 (414)
T PF02897_consen  131 VSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHKLG  210 (414)
T ss_dssp             ETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEETT
T ss_pred             ECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccccccceEEEeCCCCEEEEEEeCcccccccCCCCcEEEEEECC
Confidence            89999999855    4444679999999987654333322233499999988877664332           37888877


Q ss_pred             Cccee--eeeccccCC--eEEEEEccCCcEEEEeeCC----CcEEEEeCCcccchhcccccccceEEeecCCcCceeEEE
Q 014475          111 SGRLL--KKWHAHYRA--VTCLVFSEDGSFLISGSED----GCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIV  182 (424)
Q Consensus       111 ~~~~~--~~~~~~~~~--i~~~~~~~~~~~l~s~~~d----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  182 (424)
                      +....  ..+......  ...+..++++++++..+..    ..+.+.++....       ........+..+...+....
T Consensus       211 t~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~-------~~~~~~~~l~~~~~~~~~~v  283 (414)
T PF02897_consen  211 TPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGG-------SPDAKPKLLSPREDGVEYYV  283 (414)
T ss_dssp             S-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTT-------TSS-SEEEEEESSSS-EEEE
T ss_pred             CChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccC-------CCcCCcEEEeCCCCceEEEE
Confidence            66432  344443332  5678899999987754332    347777875521       00111222222333333322


Q ss_pred             EEEcCceeEEEEEe---CCCcEEEEecCCCce---e-eeeecCc--ceeEEEECCCCCEEEEE-eCCC--cEEEEEcC-C
Q 014475          183 IGYGGVSATIVSAS---EDRTCKVWSLLKGRL---L-RNIVFPS--VIDAIALDPAEHVFYAG-SRDG--SIYIAALN-A  249 (424)
Q Consensus       183 ~~~~~~~~~l~~~~---~d~~v~iwd~~~~~~---~-~~~~~~~--~i~~~~~~~~~~~l~~~-~~dg--~i~i~d~~-~  249 (424)
                      -...+  .+++...   ..+.|.-.++.+...   . ..+.+..  .+..+..  .+.+|+.. ..++  .|+++++. .
T Consensus       284 ~~~~~--~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~--~~~~Lvl~~~~~~~~~l~v~~~~~~  359 (414)
T PF02897_consen  284 DHHGD--RLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSL--FKDYLVLSYRENGSSRLRVYDLDDG  359 (414)
T ss_dssp             EEETT--EEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEE--ETTEEEEEEEETTEEEEEEEETT-T
T ss_pred             EccCC--EEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEE--ECCEEEEEEEECCccEEEEEECCCC
Confidence            22332  3444332   235677777776653   2 2222444  3444443  44445444 4444  68888888 3


Q ss_pred             CCCCCCCcCceeeeeecc-cCcCeEEEEecC--CCEEEEeC---CCCcEEEEeCCCCcEE
Q 014475          250 ESPSTSSYGMHIIGSLSD-HSKAVTCLAYST--GDLLISGS---EDGMVRVWDPITHNIV  303 (424)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~--~~~l~t~~---~dg~i~iwd~~~~~~~  303 (424)
                      .          ....... -.+.|..+...+  ..+.++.+   .-+++.-||+.+++..
T Consensus       360 ~----------~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~  409 (414)
T PF02897_consen  360 K----------ESREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGELT  409 (414)
T ss_dssp             E----------EEEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCEE
T ss_pred             c----------EEeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCEE
Confidence            2          2222221 233355555444  33333333   2457888888887643

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=97.92  E-value=0.011  Score=51.60  Aligned_cols=224  Identities=14%  Similarity=0.092  Sum_probs=127.1

Q ss_pred             EECCCCC-EEEEecCCCcEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhccccccc
Q 014475           87 AANSHGT-YIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASH  165 (424)
Q Consensus        87 ~~s~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~  165 (424)
                      .|.++.. ++.+--..+.|.-|+..+++.. .+. +.+.+.++.....+..|+++..  -+.+++.+++...        
T Consensus        31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~-~~~-~p~~~~~~~~~d~~g~Lv~~~~--g~~~~~~~~~~~~--------   98 (307)
T COG3386          31 VWDPDRGALLWVDILGGRIHRLDPETGKKR-VFP-SPGGFSSGALIDAGGRLIACEH--GVRLLDPDTGGKI--------   98 (307)
T ss_pred             cCcCCCCEEEEEeCCCCeEEEecCCcCceE-EEE-CCCCcccceeecCCCeEEEEcc--ccEEEeccCCcee--------
Confidence            3566655 4455556678888988766432 222 2233455554444555665543  3666776432110        


Q ss_pred             ceEEe-ecC-CcCceeEEEEEEcCceeEEEEEeC-----------CCcEEEEecCCCceeeeeec-CcceeEEEECCCCC
Q 014475          166 LYLHS-FTG-HTLRITDIVIGYGGVSATIVSASE-----------DRTCKVWSLLKGRLLRNIVF-PSVIDAIALDPAEH  231 (424)
Q Consensus       166 ~~~~~-~~~-~~~~i~~~~~~~~~~~~~l~~~~~-----------d~~v~iwd~~~~~~~~~~~~-~~~i~~~~~~~~~~  231 (424)
                      ..+.. ..+ .....+++.+.+++  .+-++...           -|.+..+|. .+...+.+.. -...+.++|||+++
T Consensus        99 t~~~~~~~~~~~~r~ND~~v~pdG--~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~  175 (307)
T COG3386          99 TLLAEPEDGLPLNRPNDGVVDPDG--RIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGK  175 (307)
T ss_pred             EEeccccCCCCcCCCCceeEcCCC--CEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEECCCCC
Confidence            11111 111 12455667777776  33332222           133444443 4554444443 56678999999998


Q ss_pred             EEEEEeC-CCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCCC-cEEEEeCCCCcEEEEEec
Q 014475          232 VFYAGSR-DGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDG-MVRVWDPITHNIVRMFRL  308 (424)
Q Consensus       232 ~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg-~i~iwd~~~~~~~~~~~~  308 (424)
                      .|+.... .+.|+-|++.........  ...........+..-.++... |.+.+++..+| .|.+|+.. |+++..+..
T Consensus       176 tly~aDT~~~~i~r~~~d~~~g~~~~--~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~l  252 (307)
T COG3386         176 TLYVADTPANRIHRYDLDPATGPIGG--RRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKL  252 (307)
T ss_pred             EEEEEeCCCCeEEEEecCcccCccCC--cceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEEC
Confidence            8887765 478888888741111111  111222223445566677777 66665555444 89999988 999999998


Q ss_pred             cCCCeeEEEEE-ecCceeeec
Q 014475          309 AKGPVNNILVV-RRPLYLNLG  328 (424)
Q Consensus       309 ~~~~v~~l~~s-~~~~~l~~~  328 (424)
                      +...+++++|- |+.+.|...
T Consensus       253 P~~~~t~~~FgG~~~~~L~iT  273 (307)
T COG3386         253 PVKRPTNPAFGGPDLNTLYIT  273 (307)
T ss_pred             CCCCCccceEeCCCcCEEEEE
Confidence            87888888887 445555433

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=97.89  E-value=0.0022  Score=45.61  Aligned_cols=100  Identities=16%  Similarity=0.211  Sum_probs=72.7

Q ss_pred             eeEEEEEE---cCceeEEEEEeCCCcEEEEecCCCceeeeeecCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCC
Q 014475          178 ITDIVIGY---GGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPST  254 (424)
Q Consensus       178 i~~~~~~~---~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~  254 (424)
                      |+++++..   ++. +.|++|+.|..|++|+-  .+.+..+.....+.+++-... ..|+.+..+|+|-+|+-....   
T Consensus         2 V~al~~~d~d~dg~-~eLlvGs~D~~IRvf~~--~e~~~Ei~e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~~Rl---   74 (111)
T PF14783_consen    2 VTALCLFDFDGDGE-NELLVGSDDFEIRVFKG--DEIVAEITETDKVTSLCSLGG-GRFAYALANGTVGVYDRSQRL---   74 (111)
T ss_pred             eeEEEEEecCCCCc-ceEEEecCCcEEEEEeC--CcEEEEEecccceEEEEEcCC-CEEEEEecCCEEEEEeCccee---
Confidence            55666654   333 78999999999999984  577888888888999888776 568889999999999875432   


Q ss_pred             CCcCceeeeeecccCcCeEEEEecC-C----CEEEEeCCCCcEE
Q 014475          255 SSYGMHIIGSLSDHSKAVTCLAYST-G----DLLISGSEDGMVR  293 (424)
Q Consensus       255 ~~~~~~~~~~~~~~~~~i~~~~~~~-~----~~l~t~~~dg~i~  293 (424)
                              -..+ ....++++.+.. .    .-|++|-.+|.|-
T Consensus        75 --------WRiK-SK~~~~~~~~~D~~gdG~~eLI~GwsnGkve  109 (111)
T PF14783_consen   75 --------WRIK-SKNQVTSMAFYDINGDGVPELIVGWSNGKVE  109 (111)
T ss_pred             --------eeec-cCCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence                    1122 223367776655 3    3788888888774

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=97.88  E-value=0.0047  Score=59.18  Aligned_cols=230  Identities=14%  Similarity=0.202  Sum_probs=125.0

Q ss_pred             CCCCCEEEEecCCC------cEEEEEccCcceee--eeccccCCeEEEEEccCCcEEEEeeCC-C-----cEEEEeCCcc
Q 014475           89 NSHGTYIAGGGQSG------DIYMWEVASGRLLK--KWHAHYRAVTCLVFSEDGSFLISGSED-G-----CVRIWSLLTV  154 (424)
Q Consensus        89 s~~~~~l~~~~~dg------~v~iwd~~~~~~~~--~~~~~~~~i~~~~~~~~~~~l~s~~~d-g-----~i~iwd~~~~  154 (424)
                      +..+.+++.||.++      .+..||..++.-..  .+. ....-.+++.. ++...++|+.| |     .+..||..+ 
T Consensus       282 ~~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~-~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~-  358 (571)
T KOG4441|consen  282 SVSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMP-SPRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRT-  358 (571)
T ss_pred             CCCCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCC-cccccccEEEE-CCEEEEEccccCCCcccceEEEecCCC-
Confidence            34466778888774      58889988774332  222 22223445554 46788999988 3     466777755 


Q ss_pred             cchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCc-----EEEEecCCCceeeeeecCcceeEEEEC-C
Q 014475          155 FEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRT-----CKVWSLLKGRLLRNIVFPSVIDAIALD-P  228 (424)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~-----v~iwd~~~~~~~~~~~~~~~i~~~~~~-~  228 (424)
                              .....+..+....... ++ ..-++  ...++|+.||.     +..||..+.+-...-............ -
T Consensus       359 --------~~W~~~a~M~~~R~~~-~v-~~l~g--~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~  426 (571)
T KOG4441|consen  359 --------NQWTPVAPMNTKRSDF-GV-AVLDG--KLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVL  426 (571)
T ss_pred             --------CceeccCCccCccccc-ee-EEECC--EEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEEE
Confidence                    2222222222211111 11 12233  78888888864     777887765543333222222222222 2


Q ss_pred             CCCEEEEEeCCC------cEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecCCCEEEEeCCCCc-----EEEEeC
Q 014475          229 AEHVFYAGSRDG------SIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTGDLLISGSEDGM-----VRVWDP  297 (424)
Q Consensus       229 ~~~~l~~~~~dg------~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~t~~~dg~-----i~iwd~  297 (424)
                      +|.+.++|+.++      .+..||..++.       |..+..+..-..... ++.-.+.+++.||.|+.     |..||.
T Consensus       427 ~g~iYi~GG~~~~~~~l~sve~YDP~t~~-------W~~~~~M~~~R~~~g-~a~~~~~iYvvGG~~~~~~~~~VE~ydp  498 (571)
T KOG4441|consen  427 GGKLYIIGGGDGSSNCLNSVECYDPETNT-------WTLIAPMNTRRSGFG-VAVLNGKIYVVGGFDGTSALSSVERYDP  498 (571)
T ss_pred             CCEEEEEcCcCCCccccceEEEEcCCCCc-------eeecCCcccccccce-EEEECCEEEEECCccCCCccceEEEEcC
Confidence            677788887554      57788887765       344444333222222 33334788888887763     777888


Q ss_pred             CCCcEEEEEeccCCCeeEEEE-EecCceeeeccCCCc-----eeeccCCCC
Q 014475          298 ITHNIVRMFRLAKGPVNNILV-VRRPLYLNLGSFSNP-----HTSSRRHGS  342 (424)
Q Consensus       298 ~~~~~~~~~~~~~~~v~~l~~-s~~~~~l~~~~~d~~-----i~iw~~~~~  342 (424)
                      .+.+-... ..-..+...+.. .-+++..++|+.||.     |..||..+.
T Consensus       499 ~~~~W~~v-~~m~~~rs~~g~~~~~~~ly~vGG~~~~~~l~~ve~ydp~~d  548 (571)
T KOG4441|consen  499 ETNQWTMV-APMTSPRSAVGVVVLGGKLYAVGGFDGNNNLNTVECYDPETD  548 (571)
T ss_pred             CCCceeEc-ccCccccccccEEEECCEEEEEecccCccccceeEEcCCCCC
Confidence            76553332 111222222222 235566688888875     555555544

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.88  E-value=0.0058  Score=50.95  Aligned_cols=252  Identities=13%  Similarity=0.179  Sum_probs=146.5

Q ss_pred             CCceeeeecCCCCeeEEEECCC-CCEEEEecCCCc-EEEEEccCcceeeeeccccC--CeEEEEEccCCcEEEEeeCC--
Q 014475           70 KPQVEVKSLPAEPIKPIAANSH-GTYIAGGGQSGD-IYMWEVASGRLLKKWHAHYR--AVTCLVFSEDGSFLISGSED--  143 (424)
Q Consensus        70 ~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~-v~iwd~~~~~~~~~~~~~~~--~i~~~~~~~~~~~l~s~~~d--  143 (424)
                      .+++............++|+|. ..-++.+-.-|+ ..++|....+....+....+  ..-.-.|+|||.+|...-.|  
T Consensus        57 aGk~v~~~~lpaR~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd  136 (366)
T COG3490          57 AGKIVFATALPARGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFD  136 (366)
T ss_pred             CCceeeeeecccccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCC
Confidence            3445555555667778889985 455666666666 67889888776665532211  12235699999988876443  


Q ss_pred             ---CcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeC------------------CCcEE
Q 014475          144 ---GCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASE------------------DRTCK  202 (424)
Q Consensus       144 ---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~------------------d~~v~  202 (424)
                         |.|-+||.+.          ....+-.+..|.-.-..+.+.+++  ..++.+..                  .-.+.
T Consensus       137 ~~rGViGvYd~r~----------~fqrvgE~~t~GiGpHev~lm~DG--rtlvvanGGIethpdfgR~~lNldsMePSlv  204 (366)
T COG3490         137 PNRGVIGVYDARE----------GFQRVGEFSTHGIGPHEVTLMADG--RTLVVANGGIETHPDFGRTELNLDSMEPSLV  204 (366)
T ss_pred             CCCceEEEEeccc----------ccceecccccCCcCcceeEEecCC--cEEEEeCCceecccccCccccchhhcCccEE
Confidence               6799999864          334556677787777888999998  66655432                  12355


Q ss_pred             EEecCCCceeeeeecC-----cceeEEEECCCCCEEEEEeCCCc-----EEEEEcCCCCCCCCCcCceeeeeecccCcCe
Q 014475          203 VWSLLKGRLLRNIVFP-----SVIDAIALDPAEHVFYAGSRDGS-----IYIAALNAESPSTSSYGMHIIGSLSDHSKAV  272 (424)
Q Consensus       203 iwd~~~~~~~~~~~~~-----~~i~~~~~~~~~~~l~~~~~dg~-----i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i  272 (424)
                      +.|..+++++.+...+     -.+..++..++|..++.+-..|.     ..+=-...+.+. ...... ..........|
T Consensus       205 lld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l-~~~~~p-ee~~~~~anYi  282 (366)
T COG3490         205 LLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPL-EFLDLP-EEQTAAFANYI  282 (366)
T ss_pred             EEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcC-cccCCC-HHHHHHHHhhh
Confidence            5666667666655433     46778888888876554432221     000001111000 000000 00111223557


Q ss_pred             EEEEecC-CCEEE-EeCCCCcEEEEeCCCCcEEEEEeccCCCeeEEEEEecCceeeeccCCCceeeccC
Q 014475          273 TCLAYST-GDLLI-SGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRR  339 (424)
Q Consensus       273 ~~~~~~~-~~~l~-t~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~d~~i~iw~~  339 (424)
                      -+++.+. ..+++ |.-..+...+||..+|..+..-....  ...++  +...-+++.+.+|.+.++..
T Consensus       283 gsiA~n~~~glV~lTSP~GN~~vi~da~tG~vv~~a~l~d--aaGva--~~~~gf~vssg~G~~~~~s~  347 (366)
T COG3490         283 GSIAANRRDGLVALTSPRGNRAVIWDAATGAVVSEAALPD--AAGVA--AAKGGFAVSSGQGRIIFYSR  347 (366)
T ss_pred             hheeecccCCeEEEecCCCCeEEEEEcCCCcEEecccccc--cccce--eccCceEEecCCceEEeccc
Confidence            7788876 44444 44456678899999998877544221  12223  33344566677888887743

>PHA02713 hypothetical protein; Provisional

Probab=97.86  E-value=0.0018  Score=62.11  Aligned_cols=217  Identities=9%  Similarity=0.106  Sum_probs=110.2

Q ss_pred             eEEEEECCCCceeeeecCCCCe--eEEEECCCCCEEEEecCC------CcEEEEEccCccee--eeeccccCCeEEEEEc
Q 014475           62 SILYWSWSKPQVEVKSLPAEPI--KPIAANSHGTYIAGGGQS------GDIYMWEVASGRLL--KKWHAHYRAVTCLVFS  131 (424)
Q Consensus        62 ~i~vwd~~~~~~~~~~~~~~~v--~~~~~s~~~~~l~~~~~d------g~v~iwd~~~~~~~--~~~~~~~~~i~~~~~~  131 (424)
                      .+..||..+.+.........+.  .+++. -++...+.||.+      ..+..||+.+..-.  ..+........ ++. 
T Consensus       273 ~v~~yd~~~~~W~~l~~mp~~r~~~~~a~-l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~-~~~-  349 (557)
T PHA02713        273 CILVYNINTMEYSVISTIPNHIINYASAI-VDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFS-LAV-  349 (557)
T ss_pred             CEEEEeCCCCeEEECCCCCccccceEEEE-ECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhcee-EEE-
Confidence            5677887766543222211111  12222 366777777753      34788898776432  22221112222 222 


Q ss_pred             cCCcEEEEeeCCC-----cEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCC-------
Q 014475          132 EDGSFLISGSEDG-----CVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDR-------  199 (424)
Q Consensus       132 ~~~~~l~s~~~dg-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~-------  199 (424)
                      -+++..+.||.++     .+..||..+.         ....+..+....... +++ .-++  ...+.|+.++       
T Consensus       350 ~~g~IYviGG~~~~~~~~sve~Ydp~~~---------~W~~~~~mp~~r~~~-~~~-~~~g--~IYviGG~~~~~~~~~~  416 (557)
T PHA02713        350 IDDTIYAIGGQNGTNVERTIECYTMGDD---------KWKMLPDMPIALSSY-GMC-VLDQ--YIYIIGGRTEHIDYTSV  416 (557)
T ss_pred             ECCEEEEECCcCCCCCCceEEEEECCCC---------eEEECCCCCcccccc-cEE-EECC--EEEEEeCCCcccccccc
Confidence            2577888888764     3778888652         122111111111111 111 2234  6777776542       


Q ss_pred             ----------------cEEEEecCCCceeeeee--cCcceeEEEECCCCCEEEEEeCCC------cEEEEEcCC-CCCCC
Q 014475          200 ----------------TCKVWSLLKGRLLRNIV--FPSVIDAIALDPAEHVFYAGSRDG------SIYIAALNA-ESPST  254 (424)
Q Consensus       200 ----------------~v~iwd~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~dg------~i~i~d~~~-~~~~~  254 (424)
                                      .+..||..+.+-...-.  .+..-.+++ .-++++.++|+.++      .+..||..+ ..   
T Consensus       417 ~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~~~~~-~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~---  492 (557)
T PHA02713        417 HHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTIRPGVV-SHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNG---  492 (557)
T ss_pred             cccccccccccccccceEEEECCCCCeEeecCCCCcccccCcEE-EECCEEEEEeCCCCCCccceeEEEecCCCCCC---
Confidence                            47778877654322211  111111122 22566777776542      367788876 43   


Q ss_pred             CCcCceeeeeecccCcCeEEEEecCCCEEEEeCCCC--cEEEEeCCCCcEE
Q 014475          255 SSYGMHIIGSLSDHSKAVTCLAYSTGDLLISGSEDG--MVRVWDPITHNIV  303 (424)
Q Consensus       255 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~t~~~dg--~i~iwd~~~~~~~  303 (424)
                          |..+..+.........+. ..+.+.++|+.+|  .+..||+.+.+=.
T Consensus       493 ----W~~~~~m~~~r~~~~~~~-~~~~iyv~Gg~~~~~~~e~yd~~~~~W~  538 (557)
T PHA02713        493 ----WELITTTESRLSALHTIL-HDNTIMMLHCYESYMLQDTFNVYTYEWN  538 (557)
T ss_pred             ----eeEccccCcccccceeEE-ECCEEEEEeeecceeehhhcCccccccc
Confidence                454554443333333333 3488889999888  6777887766533

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=97.85  E-value=0.0069  Score=54.89  Aligned_cols=84  Identities=18%  Similarity=0.121  Sum_probs=59.0

Q ss_pred             eeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCCCcEEEEEeccCCC-eeEEEEEec-----------------
Q 014475          261 IIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGP-VNNILVVRR-----------------  321 (424)
Q Consensus       261 ~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~-v~~l~~s~~-----------------  321 (424)
                      ....+.+....+.+++.+| +++.++.+.=|.|.++|+.++..++.+++..+. +.-+.....                 
T Consensus       299 ~r~~l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~  378 (415)
T PF14655_consen  299 MRFGLPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRF  378 (415)
T ss_pred             eEEeeccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcc
Confidence            3445556667799999999 888888888899999999999999988876542 111111111                 


Q ss_pred             Ccee-eeccCCCceeeccCCCCCC
Q 014475          322 PLYL-NLGSFSNPHTSSRRHGSQL  344 (424)
Q Consensus       322 ~~~l-~~~~~d~~i~iw~~~~~~~  344 (424)
                      ..+| +-+-.-|.|-+|.++.+..
T Consensus       379 ~l~LvIyaprRg~lEvW~~~~g~R  402 (415)
T PF14655_consen  379 ALFLVIYAPRRGILEVWSMRQGPR  402 (415)
T ss_pred             eEEEEEEeccCCeEEEEecCCCCE
Confidence            1233 3466788899999986643

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.83  E-value=0.0001  Score=67.38  Aligned_cols=75  Identities=24%  Similarity=0.271  Sum_probs=67.3

Q ss_pred             CCCCeeEEEECCCCCEEEEecCCCcEEEEEccCcceeeeeccccCCeE-EEEEccCCcEEEEeeCCCcEEEEeCCcc
Q 014475           79 PAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVT-CLVFSEDGSFLISGSEDGCVRIWSLLTV  154 (424)
Q Consensus        79 ~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~-~~~~~~~~~~l~s~~~dg~i~iwd~~~~  154 (424)
                      ....+.-+.|+|.-.++|.+..+|.|.+..+. .+.+.++.-|...++ +++|.|||+.|++|-.||+|++.|++++
T Consensus        19 l~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~   94 (665)
T KOG4640|consen   19 LPINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKG   94 (665)
T ss_pred             cccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCC
Confidence            35578899999999999999999999999987 777888887777777 9999999999999999999999999764

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=97.82  E-value=5e-05  Score=60.72  Aligned_cols=147  Identities=14%  Similarity=0.147  Sum_probs=99.4

Q ss_pred             eEEEEEeCCCcEEEEecCCCceeeeee--cCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecc
Q 014475          190 ATIVSASEDRTCKVWSLLKGRLLRNIV--FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSD  267 (424)
Q Consensus       190 ~~l~~~~~d~~v~iwd~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~  267 (424)
                      ..+...+.+|.|+-++++..+....-.  +...   .....-+..+++|+.+|.|++|......        ........
T Consensus        31 ~~l~~~sa~~~v~~~~~~k~k~s~rse~~~~e~---~~v~~~~~~~~vG~~dg~v~~~n~n~~g--------~~~d~~~s   99 (238)
T KOG2444|consen   31 HLLRATSADGLVRERKVRKHKESCRSERFIDEG---QRVVTASAKLMVGTSDGAVYVFNWNLEG--------AHSDRVCS   99 (238)
T ss_pred             hhhccccCCcccccchhhhhhhhhhhhhhhhcc---eeecccCceEEeecccceEEEecCCccc--------hHHHhhhc
Confidence            345566778899888887544322111  1111   2222356779999999999999988432        11111111


Q ss_pred             cCcCeEEEEecC--CCEEEEeCCCCcEEEEeCCCCcEEEEEeccC-CCeeEEEEEecCceeeec--cCCCceeeccCCCC
Q 014475          268 HSKAVTCLAYST--GDLLISGSEDGMVRVWDPITHNIVRMFRLAK-GPVNNILVVRRPLYLNLG--SFSNPHTSSRRHGS  342 (424)
Q Consensus       268 ~~~~i~~~~~~~--~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~-~~v~~l~~s~~~~~l~~~--~~d~~i~iw~~~~~  342 (424)
                      -...|-++.-.-  +.+..+++.||.|+.|++..++.+.....|. .++..+..+..+++|+.+  |.|..++.|++...
T Consensus       100 ~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~~  179 (238)
T KOG2444|consen  100 GEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEKI  179 (238)
T ss_pred             ccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchhhh
Confidence            223333322222  4588899999999999999999999888888 688888888888899888  99999999998855


Q ss_pred             CCCCC
Q 014475          343 QLPPP  347 (424)
Q Consensus       343 ~~~~~  347 (424)
                      .-..+
T Consensus       180 ~d~~~  184 (238)
T KOG2444|consen  180 KDESP  184 (238)
T ss_pred             hccCc
Confidence            44333

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=97.79  E-value=0.0025  Score=45.36  Aligned_cols=100  Identities=21%  Similarity=0.236  Sum_probs=69.3

Q ss_pred             eEEEEEcc---C-CcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCc
Q 014475          125 VTCLVFSE---D-GSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRT  200 (424)
Q Consensus       125 i~~~~~~~---~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~  200 (424)
                      |+++++..   + .+.|++|+.|..|++|+-+.             .+..+. -...|++++-...   ..++.+..+|+
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e-------------~~~Ei~-e~~~v~~L~~~~~---~~F~Y~l~NGT   64 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDE-------------IVAEIT-ETDKVTSLCSLGG---GRFAYALANGT   64 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeCCc-------------EEEEEe-cccceEEEEEcCC---CEEEEEecCCE
Confidence            66777764   2 25799999999999998643             333333 3456666666555   57899999999


Q ss_pred             EEEEecCCCceeeeeecCcceeEEEECC-C--C-CEEEEEeCCCcEE
Q 014475          201 CKVWSLLKGRLLRNIVFPSVIDAIALDP-A--E-HVFYAGSRDGSIY  243 (424)
Q Consensus       201 v~iwd~~~~~~~~~~~~~~~i~~~~~~~-~--~-~~l~~~~~dg~i~  243 (424)
                      |-+|+-  .+.+..++....+.++++.. +  | .-|++|-.+|.|-
T Consensus        65 VGvY~~--~~RlWRiKSK~~~~~~~~~D~~gdG~~eLI~GwsnGkve  109 (111)
T PF14783_consen   65 VGVYDR--SQRLWRIKSKNQVTSMAFYDINGDGVPELIVGWSNGKVE  109 (111)
T ss_pred             EEEEeC--cceeeeeccCCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence            999985  34455555555577766644 2  2 3688898898774

>smart00320 WD40 WD40 repeats

Probab=97.77  E-value=6.5e-05  Score=42.55  Aligned_cols=39  Identities=15%  Similarity=0.187  Sum_probs=35.0

Q ss_pred             CcEEEEEeccCCCeeEEEEEecCceeeeccCCCceeecc
Q 014475          300 HNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSR  338 (424)
Q Consensus       300 ~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~d~~i~iw~  338 (424)
                      ++++..+..|...|.++.|++++.++++++.|+.+++|+
T Consensus         2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            456777788999999999999999999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>PHA02713 hypothetical protein; Provisional

Probab=97.74  E-value=0.012  Score=56.65  Aligned_cols=215  Identities=7%  Similarity=0.080  Sum_probs=106.0

Q ss_pred             cEEEEEccCccee--eeeccccCCeEEEEEccCCcEEEEeeCC------CcEEEEeCCcccchhcccccccceEEeecCC
Q 014475          103 DIYMWEVASGRLL--KKWHAHYRAVTCLVFSEDGSFLISGSED------GCVRIWSLLTVFEECESQRASHLYLHSFTGH  174 (424)
Q Consensus       103 ~v~iwd~~~~~~~--~~~~~~~~~i~~~~~~~~~~~l~s~~~d------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  174 (424)
                      .+..||..+++-.  ..+...... .+++. -++..++.|+.+      ..+..||+.+.         ....+..+...
T Consensus       273 ~v~~yd~~~~~W~~l~~mp~~r~~-~~~a~-l~~~IYviGG~~~~~~~~~~v~~Yd~~~n---------~W~~~~~m~~~  341 (557)
T PHA02713        273 CILVYNINTMEYSVISTIPNHIIN-YASAI-VDNEIIIAGGYNFNNPSLNKVYKINIENK---------IHVELPPMIKN  341 (557)
T ss_pred             CEEEEeCCCCeEEECCCCCccccc-eEEEE-ECCEEEEEcCCCCCCCccceEEEEECCCC---------eEeeCCCCcch
Confidence            5778888776432  222211111 22232 256777787754      23667887552         11111111111


Q ss_pred             cCceeEEEEEEcCceeEEEEEeCCC-----cEEEEecCCCceeeeeecCcce--eEEEECCCCCEEEEEeCCC-------
Q 014475          175 TLRITDIVIGYGGVSATIVSASEDR-----TCKVWSLLKGRLLRNIVFPSVI--DAIALDPAEHVFYAGSRDG-------  240 (424)
Q Consensus       175 ~~~i~~~~~~~~~~~~~l~~~~~d~-----~v~iwd~~~~~~~~~~~~~~~i--~~~~~~~~~~~l~~~~~dg-------  240 (424)
                      .... ++ ..-++  ...+.|+.++     .+..||..+.+-...-..+.+.  .+++ .-++...+.|+.++       
T Consensus       342 R~~~-~~-~~~~g--~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~-~~~g~IYviGG~~~~~~~~~~  416 (557)
T PHA02713        342 RCRF-SL-AVIDD--TIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMC-VLDQYIYIIGGRTEHIDYTSV  416 (557)
T ss_pred             hhce-eE-EEECC--EEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEE-EECCEEEEEeCCCcccccccc
Confidence            1111 12 22344  6777777654     4788998765433221111111  1111 12677777777542       


Q ss_pred             ----------------cEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecCCCEEEEeCCC------CcEEEEeCC
Q 014475          241 ----------------SIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTGDLLISGSED------GMVRVWDPI  298 (424)
Q Consensus       241 ----------------~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~t~~~d------g~i~iwd~~  298 (424)
                                      .+..||..+..       |..+..+....... +++...+.+.+.|+.+      ..+..||..
T Consensus       417 ~~~~~~~~~~~~~~~~~ve~YDP~td~-------W~~v~~m~~~r~~~-~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~  488 (557)
T PHA02713        417 HHMNSIDMEEDTHSSNKVIRYDTVNNI-------WETLPNFWTGTIRP-GVVSHKDDIYVVCDIKDEKNVKTCIFRYNTN  488 (557)
T ss_pred             cccccccccccccccceEEEECCCCCe-------EeecCCCCcccccC-cEEEECCEEEEEeCCCCCCccceeEEEecCC
Confidence                            46677776653       33333332211111 2333336777777754      246789988


Q ss_pred             C-C--cEEEEEeccCCCeeEEEEEecCceeeeccCCC--ceeeccCCCCC
Q 014475          299 T-H--NIVRMFRLAKGPVNNILVVRRPLYLNLGSFSN--PHTSSRRHGSQ  343 (424)
Q Consensus       299 ~-~--~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~d~--~i~iw~~~~~~  343 (424)
                      + .  ..+..+........  ...-+++..++|+.|+  .+-.+|..+.+
T Consensus       489 ~~~~W~~~~~m~~~r~~~~--~~~~~~~iyv~Gg~~~~~~~e~yd~~~~~  536 (557)
T PHA02713        489 TYNGWELITTTESRLSALH--TILHDNTIMMLHCYESYMLQDTFNVYTYE  536 (557)
T ss_pred             CCCCeeEccccCcccccce--eEEECCEEEEEeeecceeehhhcCccccc
Confidence            6 3  33333332222222  2223778889999888  56666665554

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=97.71  E-value=0.02  Score=48.03  Aligned_cols=181  Identities=15%  Similarity=0.090  Sum_probs=111.5

Q ss_pred             CeEEEEEccCCcEEEEeeCCC--cEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcE
Q 014475          124 AVTCLVFSEDGSFLISGSEDG--CVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTC  201 (424)
Q Consensus       124 ~i~~~~~~~~~~~l~s~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v  201 (424)
                      ....+.|..++.++-+.+.-|  .|+.+|+.++...         ....+.. .----.++...+   ....-.-.++..
T Consensus        46 FTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~---------~~~~l~~-~~FgEGit~~~d---~l~qLTWk~~~~  112 (264)
T PF05096_consen   46 FTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVL---------QSVPLPP-RYFGEGITILGD---KLYQLTWKEGTG  112 (264)
T ss_dssp             EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEE---------EEEE-TT-T--EEEEEEETT---EEEEEESSSSEE
T ss_pred             cCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEE---------EEEECCc-cccceeEEEECC---EEEEEEecCCeE
Confidence            345688877888888888777  6889999774321         1111111 111122333322   455556678999


Q ss_pred             EEEecCCCceeeeeecCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeec--cc---CcCeEEEE
Q 014475          202 KVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLS--DH---SKAVTCLA  276 (424)
Q Consensus       202 ~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~--~~---~~~i~~~~  276 (424)
                      .+||..+.+.+..+..+..-..++  .++..|+.+.....++.+|..+..         ....+.  ..   -..++-+.
T Consensus       113 f~yd~~tl~~~~~~~y~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~---------~~~~i~V~~~g~pv~~LNELE  181 (264)
T PF05096_consen  113 FVYDPNTLKKIGTFPYPGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFK---------EVRTIQVTDNGRPVSNLNELE  181 (264)
T ss_dssp             EEEETTTTEEEEEEE-SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-S---------EEEEEE-EETTEE---EEEEE
T ss_pred             EEEccccceEEEEEecCCcceEEE--cCCCEEEEECCccceEEECCcccc---------eEEEEEEEECCEECCCcEeEE
Confidence            999999999999998777777777  467778888778889999987643         222221  12   23455566


Q ss_pred             ecCCCEEEEeCCCCcEEEEeCCCCcEEEEEec---------------cCCCeeEEEEEecCcee-eec
Q 014475          277 YSTGDLLISGSEDGMVRVWDPITHNIVRMFRL---------------AKGPVNNILVVRRPLYL-NLG  328 (424)
Q Consensus       277 ~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~---------------~~~~v~~l~~s~~~~~l-~~~  328 (424)
                      +-.|...|=.=....|...|..+|+.+..+..               ...-.+.+++.|....| +||
T Consensus       182 ~i~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG  249 (264)
T PF05096_consen  182 YINGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG  249 (264)
T ss_dssp             EETTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred             EEcCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence            66565555555667788889999998887641               12457899999876555 555

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>smart00320 WD40 WD40 repeats

Probab=97.71  E-value=0.00011  Score=41.58  Aligned_cols=38  Identities=42%  Similarity=0.820  Sum_probs=33.5

Q ss_pred             ceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEe
Q 014475          113 RLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWS  150 (424)
Q Consensus       113 ~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd  150 (424)
                      +....+..|...|.++.|.++++.+++++.|+.+++|+
T Consensus         3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            45566778889999999999999999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.71  E-value=0.042  Score=51.06  Aligned_cols=244  Identities=14%  Similarity=0.137  Sum_probs=122.4

Q ss_pred             eeEEEECCCCCEEEEe-cCCC----cEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEeeCCC-----------cE
Q 014475           83 IKPIAANSHGTYIAGG-GQSG----DIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDG-----------CV  146 (424)
Q Consensus        83 v~~~~~s~~~~~l~~~-~~dg----~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg-----------~i  146 (424)
                      +....+||+|+++|.+ +..|    .++++|+++++.+...-... ....+.|.++++.|+....+.           .|
T Consensus       126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~-~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v  204 (414)
T PF02897_consen  126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENP-KFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQV  204 (414)
T ss_dssp             EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEE-ESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEE
T ss_pred             eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccccc-ccceEEEeCCCCEEEEEEeCcccccccCCCCcEE
Confidence            3467899999999865 2333    49999999997665321111 123499999988776654332           37


Q ss_pred             EEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEE-EeCC---CcEEEEecCCC-----ceeeeeec
Q 014475          147 RIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVS-ASED---RTCKVWSLLKG-----RLLRNIVF  217 (424)
Q Consensus       147 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~-~~~d---~~v~iwd~~~~-----~~~~~~~~  217 (424)
                      +.|.+.+...       ....+............+..+.++  ++++. ....   ..+.+.|+..+     +.......
T Consensus       205 ~~~~~gt~~~-------~d~lvfe~~~~~~~~~~~~~s~d~--~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~  275 (414)
T PF02897_consen  205 YRHKLGTPQS-------EDELVFEEPDEPFWFVSVSRSKDG--RYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPR  275 (414)
T ss_dssp             EEEETTS-GG-------G-EEEEC-TTCTTSEEEEEE-TTS--SEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEES
T ss_pred             EEEECCCChH-------hCeeEEeecCCCcEEEEEEecCcc--cEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCC
Confidence            8888866321       111222222222224566777777  55553 3332   34777888764     22232333


Q ss_pred             Cccee-EEEECCCCCEEEEEe---CCCcEEEEEcCCCCCCCCCcCceeeeeecccCc--CeEEEEecCCCEEEEeCCCC-
Q 014475          218 PSVID-AIALDPAEHVFYAGS---RDGSIYIAALNAESPSTSSYGMHIIGSLSDHSK--AVTCLAYSTGDLLISGSEDG-  290 (424)
Q Consensus       218 ~~~i~-~~~~~~~~~~l~~~~---~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~--~i~~~~~~~~~~l~t~~~dg-  290 (424)
                      ...+. .+... .+.+++...   ..+.|...++......      .....+..+..  .+..+....+.+++..-.++ 
T Consensus       276 ~~~~~~~v~~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~------~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~~  348 (414)
T PF02897_consen  276 EDGVEYYVDHH-GDRLYILTNDDAPNGRLVAVDLADPSPA------EWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENGS  348 (414)
T ss_dssp             SSS-EEEEEEE-TTEEEEEE-TT-TT-EEEEEETTSTSGG------GEEEEEE--SSSEEEEEEEEETTEEEEEEEETTE
T ss_pred             CCceEEEEEcc-CCEEEEeeCCCCCCcEEEEecccccccc------cceeEEcCCCCceeEEEEEEECCEEEEEEEECCc
Confidence            33333 33333 444444332   2346666676665310      11113444444  45555544344555544454 


Q ss_pred             -cEEEEeCCCCcEEEEEec-cCCCeeEEEEEecCceee--ecc--CCCceeeccCCCCC
Q 014475          291 -MVRVWDPITHNIVRMFRL-AKGPVNNILVVRRPLYLN--LGS--FSNPHTSSRRHGSQ  343 (424)
Q Consensus       291 -~i~iwd~~~~~~~~~~~~-~~~~v~~l~~s~~~~~l~--~~~--~d~~i~iw~~~~~~  343 (424)
                       .|+++++..+.....+.. ..+.|..+...+++..+.  ..|  .-+++.-+|+.+++
T Consensus       349 ~~l~v~~~~~~~~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~  407 (414)
T PF02897_consen  349 SRLRVYDLDDGKESREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGE  407 (414)
T ss_dssp             EEEEEEETT-TEEEEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTC
T ss_pred             cEEEEEECCCCcEEeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCC
Confidence             488999884455555443 334455555555544332  222  22345555555443

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=97.69  E-value=0.064  Score=52.65  Aligned_cols=311  Identities=15%  Similarity=0.128  Sum_probs=172.9

Q ss_pred             EEeecCCCCCc-eEEEeCCCCceEEEe-eCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCceeee-----
Q 014475            4 LIASSSVADTG-IGCWDLESGAEQLRY-KSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVK-----   76 (424)
Q Consensus         4 ~lat~~~~dg~-i~vwd~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~-----   76 (424)
                      ++|.|. .+.. ++|--......+... .....-++.+....  +-.+..+|.++..| |.+.-+-++.......     
T Consensus       550 ~~aVG~-Ws~~~~~l~~~pd~~~~~~~~l~~~~iPRSIl~~~--~e~d~~yLlvalgd-G~l~~fv~d~~tg~lsd~Kk~  625 (1096)
T KOG1897|consen  550 LLAVGL-WSDISMILTFLPDLILITHEQLSGEIIPRSILLTT--FEGDIHYLLVALGD-GALLYFVLDINTGQLSDRKKV  625 (1096)
T ss_pred             EEEEEe-ecceEEEEEECCCcceeeeeccCCCccchheeeEE--eeccceEEEEEcCC-ceEEEEEEEcccceEcccccc
Confidence            455555 3333 233333333333222 23334556677666  77778899999887 9988777664433221     


Q ss_pred             ecCCCCeeEEEECCCCCEEEEecCCCcEEEEEccCcceeee-eccccCCeEEE-EEcc--CCcEEEEeeCCCcEEEEeCC
Q 014475           77 SLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKK-WHAHYRAVTCL-VFSE--DGSFLISGSEDGCVRIWSLL  152 (424)
Q Consensus        77 ~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~-~~~~~~~i~~~-~~~~--~~~~l~s~~~dg~i~iwd~~  152 (424)
                      ..-..|+.--.|+..++.-+-+..|.-..+|.. +++...+ +.  -..+..+ .|+.  -...++++.. +.+++..++
T Consensus       626 ~lGt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~-n~kLv~spls--~kev~~~c~f~s~a~~d~l~~~~~-~~l~i~tid  701 (1096)
T KOG1897|consen  626 TLGTQPISLRTFSSKSRTAVFALSDRPTVIYSS-NGKLVYSPLS--LKEVNHMCPFNSDAYPDSLASANG-GALTIGTID  701 (1096)
T ss_pred             ccCCCCcEEEEEeeCCceEEEEeCCCCEEEEec-CCcEEEeccc--hHHhhhhcccccccCCceEEEecC-CceEEEEec
Confidence            223556666677664443333445666667763 3433322 21  1112222 2322  1234555544 467777765


Q ss_pred             cccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeC-----------C---CcEEEEecCCCceeeeeecC
Q 014475          153 TVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASE-----------D---RTCKVWSLLKGRLLRNIVFP  218 (424)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~-----------d---~~v~iwd~~~~~~~~~~~~~  218 (424)
                      ..         ....+++..-+. ....+++.+..  ..+.+.+.           .   ..++++|-++.+.+...+..
T Consensus       702 ~i---------qkl~irtvpl~~-~prrI~~q~~s--l~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~vl~~hef~  769 (1096)
T KOG1897|consen  702 EI---------QKLHIRTVPLGE-SPRRICYQESS--LTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFEVLSSHEFE  769 (1096)
T ss_pred             ch---------hhcceeeecCCC-ChhheEecccc--eEEEEEecccccchhhcCCcceEEEEEEecCCceeEEeecccc
Confidence            42         222223322222 22334444322  22222211           1   24777887777666555422


Q ss_pred             -----cceeEEEECCC-CCEEEEEeC----------CCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecCCCE
Q 014475          219 -----SVIDAIALDPA-EHVFYAGSR----------DGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTGDL  282 (424)
Q Consensus       219 -----~~i~~~~~~~~-~~~l~~~~~----------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  282 (424)
                           ..+.++.|..+ +.++++|+.          .|+|.++.......      .+.+.... -.+.+.++..-.|++
T Consensus       770 ~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~------L~~v~e~~-v~Gav~aL~~fngkl  842 (1096)
T KOG1897|consen  770 RNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNS------LELVAETV-VKGAVYALVEFNGKL  842 (1096)
T ss_pred             ccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCc------eeeeeeee-eccceeehhhhCCeE
Confidence                 24555557776 677777762          47788888776211      12222221 234455554333555


Q ss_pred             EEEeCCCCcEEEEeCCCCcEEEEEeccCCCeeEEEEEecCceeeeccCCCceeeccCCCCC
Q 014475          283 LISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGSQ  343 (424)
Q Consensus       283 l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~d~~i~iw~~~~~~  343 (424)
                      +|.  -+..|++|+..+.+.++.-..+..++..+...-.|..+++|.--+.+.+-..+..+
T Consensus       843 lA~--In~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~e  901 (1096)
T KOG1897|consen  843 LAG--INQSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRSITLLQYKGDE  901 (1096)
T ss_pred             EEe--cCcEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEeeccceEEEEEEeccC
Confidence            554  45689999999998888888888999999999999999999888877766555443

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=97.63  E-value=0.0088  Score=57.39  Aligned_cols=226  Identities=16%  Similarity=0.178  Sum_probs=121.8

Q ss_pred             CCCccccCCCCc-----eeEEEEECCCCceeeeec--CCCCeeEEEECCCCCEEEEecCC-C-----cEEEEEccCccee
Q 014475           49 SSQLREQPSASS-----GSILYWSWSKPQVEVKSL--PAEPIKPIAANSHGTYIAGGGQS-G-----DIYMWEVASGRLL  115 (424)
Q Consensus        49 ~~~~l~~~~~~~-----g~i~vwd~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~~~~d-g-----~v~iwd~~~~~~~  115 (424)
                      .+.++++||...     ..+..+|..+++......  ....-.++++. ++...++||.| |     ++..||..+++-.
T Consensus       284 ~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~  362 (571)
T KOG4441|consen  284 SGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQWT  362 (571)
T ss_pred             CCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEE-CCEEEEEccccCCCcccceEEEecCCCCcee
Confidence            344555665552     578888887764332211  22233344443 46788888888 3     4788888777533


Q ss_pred             e--eeccccCCeEEEEEccCCcEEEEeeCCCc-----EEEEeCCcccchhcccccccceEEeecCCcCceeEEE-EEEcC
Q 014475          116 K--KWHAHYRAVTCLVFSEDGSFLISGSEDGC-----VRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIV-IGYGG  187 (424)
Q Consensus       116 ~--~~~~~~~~i~~~~~~~~~~~l~s~~~dg~-----i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~  187 (424)
                      .  .+............  +|...++|+.||.     +-.||..+         .+...+.....   ...... ..-++
T Consensus       363 ~~a~M~~~R~~~~v~~l--~g~iYavGG~dg~~~l~svE~YDp~~---------~~W~~va~m~~---~r~~~gv~~~~g  428 (571)
T KOG4441|consen  363 PVAPMNTKRSDFGVAVL--DGKLYAVGGFDGEKSLNSVECYDPVT---------NKWTPVAPMLT---RRSGHGVAVLGG  428 (571)
T ss_pred             ccCCccCccccceeEEE--CCEEEEEeccccccccccEEEecCCC---------CcccccCCCCc---ceeeeEEEEECC
Confidence            2  22222222222222  6888999999875     55677654         33332222222   122222 22334


Q ss_pred             ceeEEEEEeCCC------cEEEEecCCCceeeeee--cCcceeEEEECCCCCEEEEEeCCC-----cEEEEEcCCCCCCC
Q 014475          188 VSATIVSASEDR------TCKVWSLLKGRLLRNIV--FPSVIDAIALDPAEHVFYAGSRDG-----SIYIAALNAESPST  254 (424)
Q Consensus       188 ~~~~l~~~~~d~------~v~iwd~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~dg-----~i~i~d~~~~~~~~  254 (424)
                        ...++|+.++      ++..||..+.+-...-.  ....-..++. -++.++++|+.|+     ++..||..+..   
T Consensus       429 --~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~-~~~~iYvvGG~~~~~~~~~VE~ydp~~~~---  502 (571)
T KOG4441|consen  429 --KLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAV-LNGKIYVVGGFDGTSALSSVERYDPETNQ---  502 (571)
T ss_pred             --EEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccceEEE-ECCEEEEECCccCCCccceEEEEcCCCCc---
Confidence              6777777554      57788887765433322  2211222222 2677788888776     36778887765   


Q ss_pred             CCcCceeeeeecccCcCeEEEEecCCCEEEEeCCCCc-----EEEEeCCCC
Q 014475          255 SSYGMHIIGSLSDHSKAVTCLAYSTGDLLISGSEDGM-----VRVWDPITH  300 (424)
Q Consensus       255 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~t~~~dg~-----i~iwd~~~~  300 (424)
                          |..+..+......+..... .+...++|+.||.     |..||..+.
T Consensus       503 ----W~~v~~m~~~rs~~g~~~~-~~~ly~vGG~~~~~~l~~ve~ydp~~d  548 (571)
T KOG4441|consen  503 ----WTMVAPMTSPRSAVGVVVL-GGKLYAVGGFDGNNNLNTVECYDPETD  548 (571)
T ss_pred             ----eeEcccCccccccccEEEE-CCEEEEEecccCccccceeEEcCCCCC
Confidence                4444334333333333333 3778888887763     566665544

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.59  E-value=0.00036  Score=64.02  Aligned_cols=93  Identities=15%  Similarity=0.124  Sum_probs=78.5

Q ss_pred             cCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCcee-EEEEEEcCceeEEEEEeCCCc
Q 014475          122 YRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRIT-DIVIGYGGVSATIVSASEDRT  200 (424)
Q Consensus       122 ~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~~~l~~~~~d~~  200 (424)
                      ...+..+.|+|.-..+|.+..+|.|.+..++            .+.+.++..|...++ +++|.|+|  +.++.|-.||+
T Consensus        20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n------------~qRlwtip~p~~~v~~sL~W~~DG--kllaVg~kdG~   85 (665)
T KOG4640|consen   20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN------------WQRLWTIPIPGENVTASLCWRPDG--KLLAVGFKDGT   85 (665)
T ss_pred             ccceEEEEEcCccchhheeccCCcEEEEEec------------cceeEeccCCCCccceeeeecCCC--CEEEEEecCCe
Confidence            3467889999999999999999999998872            445666776777777 99999998  99999999999


Q ss_pred             EEEEecCCCceeee--eecCcceeEEEECC
Q 014475          201 CKVWSLLKGRLLRN--IVFPSVIDAIALDP  228 (424)
Q Consensus       201 v~iwd~~~~~~~~~--~~~~~~i~~~~~~~  228 (424)
                      |++.|+.++..+..  +.....|.++-|+|
T Consensus        86 I~L~Dve~~~~l~~~~~s~e~~is~~~w~~  115 (665)
T KOG4640|consen   86 IRLHDVEKGGRLVSFLFSVETDISKGIWDR  115 (665)
T ss_pred             EEEEEccCCCceeccccccccchheeeccc
Confidence            99999999988887  44677888888874

>PRK13616 lipoprotein LpqB; Provisional

Probab=97.58  E-value=0.011  Score=56.74  Aligned_cols=191  Identities=13%  Similarity=0.080  Sum_probs=102.8

Q ss_pred             CceEEecceeecCCCccccCCC-----Cce--eEEEEECCCCceeeeecCCCCeeEEEECCCCCEEEEecCC--------
Q 014475           37 HGLACVGQRFLASSQLREQPSA-----SSG--SILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQS--------  101 (424)
Q Consensus        37 ~~v~~~~~~~~~~~~~l~~~~~-----~~g--~i~vwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d--------  101 (424)
                      ..+...+  .+|+|+.++....     +|+  .|.+++........  ........-.|+|||..+++....        
T Consensus       350 ~~vsspa--iSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~l--t~g~~~t~PsWspDG~~lw~v~dg~~~~~v~~  425 (591)
T PRK13616        350 GNITSAA--LSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQV--LEGHSLTRPSWSLDADAVWVVVDGNTVVRVIR  425 (591)
T ss_pred             cCcccce--ECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcceee--ecCCCCCCceECCCCCceEEEecCcceEEEec
Confidence            3455556  9999998877651     123  55555653332222  223358889999998877776422        


Q ss_pred             ----CcEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEee-cCCcC
Q 014475          102 ----GDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSF-TGHTL  176 (424)
Q Consensus       102 ----g~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~-~~~~~  176 (424)
                          +.+.+.+++.++...   ...+.|..+.|+|||..++... +|.|.+=-+....... .   .......+ ..-..
T Consensus       426 ~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~-~---~l~~~~~l~~~l~~  497 (591)
T PRK13616        426 DPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQ-Y---ALTNPREVGPGLGD  497 (591)
T ss_pred             cCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCc-e---eecccEEeecccCC
Confidence                233333444433322   2346799999999999988765 4777773332210000 0   00001112 22333


Q ss_pred             ceeEEEEEEcCceeEEEEEeCCCcEEEEecCC-Cceeeeee---cCcceeEEEECCCCCEEEEEeCCCcEEE
Q 014475          177 RITDIVIGYGGVSATIVSASEDRTCKVWSLLK-GRLLRNIV---FPSVIDAIALDPAEHVFYAGSRDGSIYI  244 (424)
Q Consensus       177 ~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~-~~~~~~~~---~~~~i~~~~~~~~~~~l~~~~~dg~i~i  244 (424)
                      .+.++.|..++  . |+.+..++...+|.+.- |.....+.   ...++..++-+++  .+++...++.+.+
T Consensus       498 ~~~~l~W~~~~--~-L~V~~~~~~~~v~~v~vDG~~~~~~~~~n~~~~v~~vaa~~~--~iyv~~~~g~~~l  564 (591)
T PRK13616        498 TAVSLDWRTGD--S-LVVGRSDPEHPVWYVNLDGSNSDALPSRNLSAPVVAVAASPS--TVYVTDARAVLQL  564 (591)
T ss_pred             ccccceEecCC--E-EEEEecCCCCceEEEecCCccccccCCCCccCceEEEecCCc--eEEEEcCCceEEe
Confidence            45778898887  5 44555555444554431 22222212   2455666666653  4666666664433

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=97.53  E-value=0.00013  Score=58.43  Aligned_cols=100  Identities=16%  Similarity=0.241  Sum_probs=57.0

Q ss_pred             eEEEEEeCCCcEEEEecCCC-ceeeeee-cCcce-eEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeec
Q 014475          190 ATIVSASEDRTCKVWSLLKG-RLLRNIV-FPSVI-DAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLS  266 (424)
Q Consensus       190 ~~l~~~~~d~~v~iwd~~~~-~~~~~~~-~~~~i-~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~  266 (424)
                      ..+++|+.+|.|.+|..... ....... ....| ..+..-.++.+.++++.+|.|+.|++....         .+....
T Consensus        71 ~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k---------~~g~~g  141 (238)
T KOG2444|consen   71 AKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNK---------VLGYVG  141 (238)
T ss_pred             ceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCc---------eeeeec
Confidence            67899999999999987621 1111111 11222 222333356688999999999999998863         333344


Q ss_pred             ccC-cCeEEEEecC-CCEEEEe--CCCCcEEEEeCC
Q 014475          267 DHS-KAVTCLAYST-GDLLISG--SEDGMVRVWDPI  298 (424)
Q Consensus       267 ~~~-~~i~~~~~~~-~~~l~t~--~~dg~i~iwd~~  298 (424)
                      .|. .++.....+. +++++.+  |.|..++.|++.
T Consensus       142 ~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve  177 (238)
T KOG2444|consen  142 QHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVE  177 (238)
T ss_pred             cccCCCcceeEEecCCceEEeeccccchhhhhcchh
Confidence            444 3333333333 4444444  445555555544

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=97.48  E-value=0.026  Score=45.84  Aligned_cols=220  Identities=12%  Similarity=0.121  Sum_probs=118.6

Q ss_pred             eecCCCccccCCCCceeEEEEECCCCceeeeecCCCCeeEEEECCCC--CEEEEe-cCCCcEEEEEccC--cceeeee--
Q 014475           46 FLASSQLREQPSASSGSILYWSWSKPQVEVKSLPAEPIKPIAANSHG--TYIAGG-GQSGDIYMWEVAS--GRLLKKW--  118 (424)
Q Consensus        46 ~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~~~~~~~v~~~~~s~~~--~~l~~~-~~dg~v~iwd~~~--~~~~~~~--  118 (424)
                      |.-..+.|.-..-..|.|+-||+...+.........++..+.+--.+  +.++++ +..-.|.-||...  -...+++  
T Consensus        22 w~~~~~sLl~VDi~ag~v~r~D~~qn~v~ra~ie~p~~ag~ilpv~~~~q~~~v~~G~kf~i~nwd~~~~~a~v~~t~~e  101 (310)
T KOG4499|consen   22 WDVERQSLLYVDIEAGEVHRYDIEQNKVYRAKIEGPPSAGFILPVEGGPQEFAVGCGSKFVIVNWDGVSESAKVYRTLFE  101 (310)
T ss_pred             eEEecceEEEEEeccCceehhhhhhhheEEEEEecCcceeEEEEecCCCceEEEeecceEEEEEcccccceeeeeeeccc
Confidence            33333333333333377777888876655444444444444443222  233333 3222344566322  2222332  


Q ss_pred             -c--cccCCeEEEEEccCCcEEEEeeCC---------CcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEc
Q 014475          119 -H--AHYRAVTCLVFSEDGSFLISGSED---------GCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYG  186 (424)
Q Consensus       119 -~--~~~~~i~~~~~~~~~~~l~s~~~d---------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  186 (424)
                       +  ......+.-..+|+|++++-.-.|         |.++.|-...             .+..+...-.--+.++|+.+
T Consensus       102 v~~d~kknR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~h-------------~v~~i~~~v~IsNgl~Wd~d  168 (310)
T KOG4499|consen  102 VQPDRKKNRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAGH-------------QVELIWNCVGISNGLAWDSD  168 (310)
T ss_pred             cCchHHhcccccCccCCCCceeeeeeccccccccccccEEEEeccCC-------------CceeeehhccCCcccccccc
Confidence             1  123455667788999985432222         3444444311             11111122223356778766


Q ss_pred             CceeEEEEEeCCCcEEEEe--cCCCce-----eeeeec-----CcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCC
Q 014475          187 GVSATIVSASEDRTCKVWS--LLKGRL-----LRNIVF-----PSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPST  254 (424)
Q Consensus       187 ~~~~~l~~~~~d~~v~iwd--~~~~~~-----~~~~~~-----~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~  254 (424)
                      .. .+.++-+.+-.|.-||  ..+|..     +..+..     +...-.+++..+|.+.++.-+.++|...|..++    
T Consensus       169 ~K-~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tG----  243 (310)
T KOG4499|consen  169 AK-KFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTG----  243 (310)
T ss_pred             Cc-EEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCC----
Confidence            53 4455566677787777  444432     222221     112335566778999999999999999999998    


Q ss_pred             CCcCceeeeeecccCcCeEEEEecC---CCEEEEeCC
Q 014475          255 SSYGMHIIGSLSDHSKAVTCLAYST---GDLLISGSE  288 (424)
Q Consensus       255 ~~~~~~~~~~~~~~~~~i~~~~~~~---~~~l~t~~~  288 (424)
                           +.+.++.-....|++++|--   +-+.+|+..
T Consensus       244 -----K~L~eiklPt~qitsccFgGkn~d~~yvT~aa  275 (310)
T KOG4499|consen  244 -----KILLEIKLPTPQITSCCFGGKNLDILYVTTAA  275 (310)
T ss_pred             -----cEEEEEEcCCCceEEEEecCCCccEEEEEehh
Confidence                 56777777788999999965   334444443

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.39  E-value=0.0007  Score=66.07  Aligned_cols=100  Identities=20%  Similarity=0.368  Sum_probs=74.1

Q ss_pred             CCCccccCCCCceeEEEEECCCCce--eeeecCCCCeeEEEECCCCCEEEEecCCCcEEEEEccCcceeeeeccccCCeE
Q 014475           49 SSQLREQPSASSGSILYWSWSKPQV--EVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVT  126 (424)
Q Consensus        49 ~~~~l~~~~~~~g~i~vwd~~~~~~--~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~  126 (424)
                      .+..++.+++. |.+...|+...-.  .......++|++++|+.+|..++.|-.+|.|.+||+..++.++.+..|..+.+
T Consensus        98 ~~~~ivi~Ts~-ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t  176 (1206)
T KOG2079|consen   98 VVVPIVIGTSH-GHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVT  176 (1206)
T ss_pred             eeeeEEEEcCc-hhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccc
Confidence            34456666665 8888888776422  22233478999999999999999999999999999999999988877776666


Q ss_pred             EEEE---ccCCcEEEEeeCCCcEEEEeC
Q 014475          127 CLVF---SEDGSFLISGSEDGCVRIWSL  151 (424)
Q Consensus       127 ~~~~---~~~~~~l~s~~~dg~i~iwd~  151 (424)
                      .+-+   ..++..++++...|.  +|.+
T Consensus       177 ~vi~v~~t~~nS~llt~D~~Gs--f~~l  202 (1206)
T KOG2079|consen  177 GVIFVGRTSQNSKLLTSDTGGS--FWKL  202 (1206)
T ss_pred             eEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence            5544   345556888877776  5654

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.33  E-value=0.00095  Score=65.18  Aligned_cols=107  Identities=20%  Similarity=0.298  Sum_probs=81.3

Q ss_pred             EEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCCCcE
Q 014475          224 IALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNI  302 (424)
Q Consensus       224 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~  302 (424)
                      +...-.+..++.|+..|.+...|+...-        .+...-..-.++|++++|+. |..++.|-.+|.|.+||+..+++
T Consensus        93 ~s~a~~~~~ivi~Ts~ghvl~~d~~~nL--------~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~  164 (1206)
T KOG2079|consen   93 ISSAIVVVPIVIGTSHGHVLLSDMTGNL--------GPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKI  164 (1206)
T ss_pred             eeeeeeeeeEEEEcCchhhhhhhhhccc--------chhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcc
Confidence            3333356678999999999999988752        22223333468999999999 99999999999999999999999


Q ss_pred             EEEEeccCCCeeEEEEE---ecCceeeeccCCCceeeccCC
Q 014475          303 VRMFRLAKGPVNNILVV---RRPLYLNLGSFSNPHTSSRRH  340 (424)
Q Consensus       303 ~~~~~~~~~~v~~l~~s---~~~~~l~~~~~d~~i~iw~~~  340 (424)
                      ++.+..|..|.+.+-+.   .++..++++..-|.  +|+..
T Consensus       165 l~~i~e~~ap~t~vi~v~~t~~nS~llt~D~~Gs--f~~lv  203 (1206)
T KOG2079|consen  165 LKVITEHGAPVTGVIFVGRTSQNSKLLTSDTGGS--FWKLV  203 (1206)
T ss_pred             eeeeeecCCccceEEEEEEeCCCcEEEEccCCCc--eEEEE
Confidence            99999888877766554   46667788777775  56543

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.31  E-value=0.0052  Score=55.64  Aligned_cols=144  Identities=13%  Similarity=0.184  Sum_probs=95.9

Q ss_pred             CCCCEEE-EecCCCcEEEEEccCcceeeeeccccCCeEEEEEccCCc-------EEEEeeCCCcEEEEeCCcccchhccc
Q 014475           90 SHGTYIA-GGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGS-------FLISGSEDGCVRIWSLLTVFEECESQ  161 (424)
Q Consensus        90 ~~~~~l~-~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~-------~l~s~~~dg~i~iwd~~~~~~~~~~~  161 (424)
                      .+.++|+ .+.....++-.|++.|+.+...+-+.. |+-+.+.|+.+       .-+.|-.|..|+-||++-.       
T Consensus       343 ~dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~-------  414 (644)
T KOG2395|consen  343 ADSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQ-------  414 (644)
T ss_pred             cccceEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEeccccc-------
Confidence            3444444 444556688899999999999987766 88888888543       2345667888999999631       


Q ss_pred             ccccceEEeecCC----cCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCcee-eeee-cCcceeEEEECCCCCEEEE
Q 014475          162 RASHLYLHSFTGH----TLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLL-RNIV-FPSVIDAIALDPAEHVFYA  235 (424)
Q Consensus       162 ~~~~~~~~~~~~~----~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~-~~~~-~~~~i~~~~~~~~~~~l~~  235 (424)
                        ....+...++|    .....|.+-..+   .++++|+.+|.|++||- .+..- ..++ ...+|..+..+.+|+++++
T Consensus       415 --~~~kl~~~q~kqy~~k~nFsc~aTT~s---G~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKwil~  488 (644)
T KOG2395|consen  415 --GKNKLAVVQSKQYSTKNNFSCFATTES---GYIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGKWILA  488 (644)
T ss_pred             --CcceeeeeeccccccccccceeeecCC---ceEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCcEEEE
Confidence              11112122222    223344444444   58999999999999996 44333 3333 6789999999999999887


Q ss_pred             EeCCCcEEEEEcC
Q 014475          236 GSRDGSIYIAALN  248 (424)
Q Consensus       236 ~~~dg~i~i~d~~  248 (424)
                      .+ +..+.+.++.
T Consensus       489 Tc-~tyLlLi~t~  500 (644)
T KOG2395|consen  489 TC-KTYLLLIDTL  500 (644)
T ss_pred             ec-ccEEEEEEEe
Confidence            66 4456666653

>PRK13616 lipoprotein LpqB; Provisional

Probab=97.28  E-value=0.034  Score=53.48  Aligned_cols=188  Identities=13%  Similarity=0.101  Sum_probs=100.8

Q ss_pred             CCeEEEEEccCCcEEEEee------CCCc--EEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEE
Q 014475          123 RAVTCLVFSEDGSFLISGS------EDGC--VRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVS  194 (424)
Q Consensus       123 ~~i~~~~~~~~~~~l~s~~------~dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~  194 (424)
                      ..+...+++|+|+.++...      .|+.  |.+++...          ....+  ..+.  ..+.-.|+|++  ..+++
T Consensus       350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg----------~~~~l--t~g~--~~t~PsWspDG--~~lw~  413 (591)
T PRK13616        350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGG----------VAVQV--LEGH--SLTRPSWSLDA--DAVWV  413 (591)
T ss_pred             cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCC----------cceee--ecCC--CCCCceECCCC--CceEE
Confidence            4678899999999887655      2443  44444421          11111  1221  25666788886  55555


Q ss_pred             EeC------------CCcEEEEecCCCceeeeeecCcceeEEEECCCCCEEEEEeCCCcEEE---EEcCCCCCCCCCcCc
Q 014475          195 ASE------------DRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYI---AALNAESPSTSSYGM  259 (424)
Q Consensus       195 ~~~------------d~~v~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i---~d~~~~~~~~~~~~~  259 (424)
                      ...            .+.+.+.+++.++...  ..+..|..+.|+|||..++... ++.|++   -....+.  ...  .
T Consensus       414 v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~--~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~--~~l--~  486 (591)
T PRK13616        414 VVDGNTVVRVIRDPATGQLARTPVDASAVAS--RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQ--YAL--T  486 (591)
T ss_pred             EecCcceEEEeccCCCceEEEEeccCchhhh--ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCc--eee--c
Confidence            432            2334444555444333  3456799999999999988766 477777   3322321  000  0


Q ss_pred             eeeeeecccCcCeEEEEecCCCEEEEeCCCCcEEEEeCCC-CcEEEEEec--cCCCeeEEEEEecCceeeeccCCCcee
Q 014475          260 HIIGSLSDHSKAVTCLAYSTGDLLISGSEDGMVRVWDPIT-HNIVRMFRL--AKGPVNNILVVRRPLYLNLGSFSNPHT  335 (424)
Q Consensus       260 ~~~~~~~~~~~~i~~~~~~~~~~l~t~~~dg~i~iwd~~~-~~~~~~~~~--~~~~v~~l~~s~~~~~l~~~~~d~~i~  335 (424)
                      .+.....+-...+..+.|.++..|+.+..++.-.+|.+.- |.....+..  ...++..++-++.  .|..+..++.+.
T Consensus       487 ~~~~l~~~l~~~~~~l~W~~~~~L~V~~~~~~~~v~~v~vDG~~~~~~~~~n~~~~v~~vaa~~~--~iyv~~~~g~~~  563 (591)
T PRK13616        487 NPREVGPGLGDTAVSLDWRTGDSLVVGRSDPEHPVWYVNLDGSNSDALPSRNLSAPVVAVAASPS--TVYVTDARAVLQ  563 (591)
T ss_pred             ccEEeecccCCccccceEecCCEEEEEecCCCCceEEEecCCccccccCCCCccCceEEEecCCc--eEEEEcCCceEE
Confidence            1111112233446789999844455666555555565442 222222222  2456777777763  344445555443

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=97.21  E-value=0.17  Score=46.29  Aligned_cols=273  Identities=14%  Similarity=0.075  Sum_probs=142.6

Q ss_pred             EEEeecCCCCCceEEEeCCCCc-----eEEEeeCCCCCCCceEEec-ceeecC--CCccccCCCCceeEEEEECCCCc--
Q 014475            3 LLIASSSVADTGIGCWDLESGA-----EQLRYKSCASPPHGLACVG-QRFLAS--SQLREQPSASSGSILYWSWSKPQ--   72 (424)
Q Consensus         3 ~~lat~~~~dg~i~vwd~~~~~-----~~~~~~~~~~~~~~v~~~~-~~~~~~--~~~l~~~~~~~g~i~vwd~~~~~--   72 (424)
                      ..+++|+ ..|.++|++...+.     .+.+.+ ..   .+|..++ .+|.+.  ...||+-..  ..+.+|.+....  
T Consensus        38 d~IivGS-~~G~LrIy~P~~~~~~~~~lllE~~-l~---~PILqv~~G~F~s~~~~~~LaVLhP--~kl~vY~v~~~~g~  110 (418)
T PF14727_consen   38 DKIIVGS-YSGILRIYDPSGNEFQPEDLLLETQ-LK---DPILQVECGKFVSGSEDLQLAVLHP--RKLSVYSVSLVDGT  110 (418)
T ss_pred             cEEEEec-cccEEEEEccCCCCCCCccEEEEEe-cC---CcEEEEEeccccCCCCcceEEEecC--CEEEEEEEEecCCC
Confidence            4688899 99999999985443     222221 11   3344444 235443  334555444  688888873211  


Q ss_pred             ------e--eeeecC--CCCeeEEEECC----C-CCEEEEecCCCcEEEEEccCcceeeeeccccCCeEEEEEccCCcEE
Q 014475           73 ------V--EVKSLP--AEPIKPIAANS----H-GTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFL  137 (424)
Q Consensus        73 ------~--~~~~~~--~~~v~~~~~s~----~-~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l  137 (424)
                            .  .....|  ......+..-|    . ..++++=+.||.+.+|+-+.-.....+.. .--...+.+.+....|
T Consensus       111 ~~~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~-~llPgPl~Y~~~tDsf  189 (418)
T PF14727_consen  111 VEHGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD-FLLPGPLCYCPRTDSF  189 (418)
T ss_pred             cccCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC-CCCCcCeEEeecCCEE
Confidence                  1  111112  22333333322    2 36788889999999999665544444443 3334568888888889


Q ss_pred             EEeeCCCcEEEEeCCcccchhccc------------ccccceEEeecCCcCceeEEEEEEc--CceeEEEEEeCCCcEEE
Q 014475          138 ISGSEDGCVRIWSLLTVFEECESQ------------RASHLYLHSFTGHTLRITDIVIGYG--GVSATIVSASEDRTCKV  203 (424)
Q Consensus       138 ~s~~~dg~i~iwd~~~~~~~~~~~------------~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~l~~~~~d~~v~i  203 (424)
                      ++++.+..+..|............            ..+..+-.++. -...+.++.....  .. ..++.-+ ..++.+
T Consensus       190 vt~sss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~n-lGE~~l~i~v~~~~~~~-~~IvvLg-er~Lf~  266 (418)
T PF14727_consen  190 VTASSSWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFN-LGEQALDIQVVRFSSSE-SDIVVLG-ERSLFC  266 (418)
T ss_pred             EEecCceeEEEecHHHhhhccccccccccccccccccccccceeEEE-CCceeEEEEEEEcCCCC-ceEEEEe-cceEEE
Confidence            999999899999764422211100            00111111111 1223334433332  11 2333333 345666


Q ss_pred             EecCCCceeeeeecCcceeEEEE-------CCC-CCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEE
Q 014475          204 WSLLKGRLLRNIVFPSVIDAIAL-------DPA-EHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCL  275 (424)
Q Consensus       204 wd~~~~~~~~~~~~~~~i~~~~~-------~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  275 (424)
                      .+- +|+.......+....+++.       .|+ ...+++++.++.+.+|.=.+-           +-..+....+| ++
T Consensus       267 l~~-~G~l~~~krLd~~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~d~~L-----------~WsA~l~~~PV-al  333 (418)
T PF14727_consen  267 LKD-NGSLRFQKRLDYNPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYEDTTL-----------VWSAQLPHVPV-AL  333 (418)
T ss_pred             EcC-CCeEEEEEecCCceeeEEEEEeecccCCCCceEEEEEecCCeEEEEeCCeE-----------EEecCCCCCCE-EE
Confidence            664 4555444444444444331       112 125888999999998864432           11111111222 33


Q ss_pred             Ee---cC-CCEEEEeCCCCcEEEEeCCC
Q 014475          276 AY---ST-GDLLISGSEDGMVRVWDPIT  299 (424)
Q Consensus       276 ~~---~~-~~~l~t~~~dg~i~iwd~~~  299 (424)
                      ..   .. ...|++-+.+|.+.+--+-|
T Consensus       334 ~v~~~~~~~G~IV~Ls~~G~L~v~YLGT  361 (418)
T PF14727_consen  334 SVANFNGLKGLIVSLSDEGQLSVSYLGT  361 (418)
T ss_pred             EecccCCCCceEEEEcCCCcEEEEEeCC
Confidence            32   23 66777777888777765554

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.17  E-value=0.028  Score=47.01  Aligned_cols=222  Identities=14%  Similarity=0.138  Sum_probs=121.5

Q ss_pred             eEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCCC----ceeEEEEECCCCceeee--ecCCCCeeEEEE
Q 014475           15 IGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSAS----SGSILYWSWSKPQVEVK--SLPAEPIKPIAA   88 (424)
Q Consensus        15 i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~----~g~i~vwd~~~~~~~~~--~~~~~~v~~~~~   88 (424)
                      ..++|...++...++....... ---.  ..|+|||.+|...-.|    -|.|-|||.+.+-...-  ..|.-....+.+
T Consensus        93 ~~vfD~~~~~~pv~~~s~~~RH-fyGH--Gvfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~l  169 (366)
T COG3490          93 AMVFDPNGAQEPVTLVSQEGRH-FYGH--GVFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTL  169 (366)
T ss_pred             EEEECCCCCcCcEEEecccCce-eecc--cccCCCCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEE
Confidence            4578877777666654332210 0000  1299999998876433    28899999885433222  234555678899


Q ss_pred             CCCCCEEEEecC------------------CCcEEEEEccCcceeee--ec--cccCCeEEEEEccCCcEEEEeeCCCcE
Q 014475           89 NSHGTYIAGGGQ------------------SGDIYMWEVASGRLLKK--WH--AHYRAVTCLVFSEDGSFLISGSEDGCV  146 (424)
Q Consensus        89 s~~~~~l~~~~~------------------dg~v~iwd~~~~~~~~~--~~--~~~~~i~~~~~~~~~~~l~s~~~dg~i  146 (424)
                      .+||+.++.+..                  .-++.+.|..+|+.+..  +.  .+.-.|..+...+||...+-+-..|.-
T Consensus       170 m~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~~  249 (366)
T COG3490         170 MADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQYRGPR  249 (366)
T ss_pred             ecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEEEEeeCCC
Confidence            999999988643                  12244555556655433  22  345567888888777655544332210


Q ss_pred             EEEeCCcccchhcccccccceEE-------eecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeeecCc
Q 014475          147 RIWSLLTVFEECESQRASHLYLH-------SFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPS  219 (424)
Q Consensus       147 ~iwd~~~~~~~~~~~~~~~~~~~-------~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~  219 (424)
                      .  |.    ........+...+.       ........|-+++.+.+.. -..+|+-..+...+||..++..+..-....
T Consensus       250 ~--d~----ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~g-lV~lTSP~GN~~vi~da~tG~vv~~a~l~d  322 (366)
T COG3490         250 N--DL----PPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDG-LVALTSPRGNRAVIWDAATGAVVSEAALPD  322 (366)
T ss_pred             c--cC----CcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCC-eEEEecCCCCeEEEEEcCCCcEEecccccc
Confidence            0  00    00000000000011       0111234566677765541 344455556678899999999876654322


Q ss_pred             ceeEEEECCCCCEEEEEeCCCcEEEEEcCC
Q 014475          220 VIDAIALDPAEHVFYAGSRDGSIYIAALNA  249 (424)
Q Consensus       220 ~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~  249 (424)
                         +.-.-+...-+++.+.+|.+.++.-..
T Consensus       323 ---aaGva~~~~gf~vssg~G~~~~~s~~~  349 (366)
T COG3490         323 ---AAGVAAAKGGFAVSSGQGRIIFYSRAA  349 (366)
T ss_pred             ---cccceeccCceEEecCCceEEeccccc
Confidence               112233455577788888888874433

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.15  E-value=0.083  Score=44.68  Aligned_cols=168  Identities=7%  Similarity=0.111  Sum_probs=111.7

Q ss_pred             CCCeeEEEECCCCCEEEEecCCCcEEEEEccCcceeeeecc-ccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchh
Q 014475           80 AEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHA-HYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEEC  158 (424)
Q Consensus        80 ~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~  158 (424)
                      ...+.++.|+|+.+.|++......-.|+=..+|+.+.++.- .-.....+.+..++++.++--.++.+.++.+.......
T Consensus        85 ~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~~~  164 (316)
T COG3204          85 TANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADTTVI  164 (316)
T ss_pred             cccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCccEE
Confidence            44599999999999998888888877877788998887743 12345678898888888888889999998876532222


Q ss_pred             cccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeee-----------cCcceeEEEEC
Q 014475          159 ESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-----------FPSVIDAIALD  227 (424)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~-----------~~~~i~~~~~~  227 (424)
                      ..... ...+......+...-.++|.+..  ..|+.+=+-.-+.||............           .-..+.++.++
T Consensus       165 ~~~~~-~i~L~~~~k~N~GfEGlA~d~~~--~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~  241 (316)
T COG3204         165 SAKVQ-KIPLGTTNKKNKGFEGLAWDPVD--HRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFN  241 (316)
T ss_pred             eccce-EEeccccCCCCcCceeeecCCCC--ceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccceec
Confidence            11111 11122222235667789999987  777777777778887765332111111           11346777888


Q ss_pred             C-CCCEEEEEeCCCcEEEEEcCCC
Q 014475          228 P-AEHVFYAGSRDGSIYIAALNAE  250 (424)
Q Consensus       228 ~-~~~~l~~~~~dg~i~i~d~~~~  250 (424)
                      + .+.+++.+..++.+.-.|....
T Consensus       242 ~~~~~LLVLS~ESr~l~Evd~~G~  265 (316)
T COG3204         242 AITNSLLVLSDESRRLLEVDLSGE  265 (316)
T ss_pred             CCCCcEEEEecCCceEEEEecCCC
Confidence            7 4556666667777777777664

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=97.11  E-value=0.14  Score=43.69  Aligned_cols=154  Identities=14%  Similarity=0.026  Sum_probs=92.2

Q ss_pred             ceEEecceeecCCCccccCC--CCceeEEEEECCCCceeeeecCCCCeeEEEECCCCCEEEEecCCCcEEEEE-ccCcce
Q 014475           38 GLACVGQRFLASSQLREQPS--ASSGSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWE-VASGRL  114 (424)
Q Consensus        38 ~v~~~~~~~~~~~~~l~~~~--~~~g~i~vwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd-~~~~~~  114 (424)
                      .+...+  .+++++.++...  .+...+.++..........  ....+..-.|++++...+....+...+++. ..++..
T Consensus        25 ~~~s~A--vS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~--~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~  100 (253)
T PF10647_consen   25 DVTSPA--VSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVL--TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTG  100 (253)
T ss_pred             cccceE--ECCCCCeEEEEEEcCCCCEEEEEcCCCcceeec--cCCccccccccCCCCEEEEEcCCCceEEEEecCCCcc
Confidence            566667  999999888766  3335666666544333222  445888889999988777776666666664 333322


Q ss_pred             e-eeec--cccCCeEEEEEccCCcEEEEee---CCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCc
Q 014475          115 L-KKWH--AHYRAVTCLVFSEDGSFLISGS---EDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGV  188 (424)
Q Consensus       115 ~-~~~~--~~~~~i~~~~~~~~~~~l~s~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  188 (424)
                      . ....  .-...|..+.++|||..++...   .++.|.+=-+........  ..-.............++++.|.++. 
T Consensus       101 ~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~--~~l~~~~~~~~~~~~~v~~v~W~~~~-  177 (253)
T PF10647_consen  101 EPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVP--RRLTGPRRVAPPLLSDVTDVAWSDDS-  177 (253)
T ss_pred             eeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCc--ceeccceEecccccCcceeeeecCCC-
Confidence            2 1121  1112899999999999887665   357777776543211100  00111122222345688999999987 


Q ss_pred             eeEEEEEeCCC
Q 014475          189 SATIVSASEDR  199 (424)
Q Consensus       189 ~~~l~~~~~d~  199 (424)
                       .+++.+...+
T Consensus       178 -~L~V~~~~~~  187 (253)
T PF10647_consen  178 -TLVVLGRSAG  187 (253)
T ss_pred             -EEEEEeCCCC
Confidence             5555554433

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.09  E-value=0.14  Score=43.30  Aligned_cols=176  Identities=15%  Similarity=0.167  Sum_probs=105.9

Q ss_pred             ccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEee--cCCcCceeEEEEEEcCceeEEEEEe
Q 014475          119 HAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSF--TGHTLRITDIVIGYGGVSATIVSAS  196 (424)
Q Consensus       119 ~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~~~l~~~~  196 (424)
                      .+-...+.++.|+|+.+.|++......-.++=-.+           ...+.++  .+ -...-.+.+..++  .+.++--
T Consensus        82 ~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~-----------GdlirtiPL~g-~~DpE~Ieyig~n--~fvi~dE  147 (316)
T COG3204          82 LGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKE-----------GDLIRTIPLTG-FSDPETIEYIGGN--QFVIVDE  147 (316)
T ss_pred             ccccccccceeeCCCcceEEEecCCCceEEEEecC-----------CceEEEecccc-cCChhHeEEecCC--EEEEEeh
Confidence            44455699999999999888887766655553322           2222222  22 1222345666555  6777767


Q ss_pred             CCCcEEEEecCCCceee-----eee-----c-CcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCC-cCceeeee
Q 014475          197 EDRTCKVWSLLKGRLLR-----NIV-----F-PSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSS-YGMHIIGS  264 (424)
Q Consensus       197 ~d~~v~iwd~~~~~~~~-----~~~-----~-~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~~~~~  264 (424)
                      .++.+.++.+.......     .+.     + ......++|+|.+..|+.+-...-+.||.+......... ....+...
T Consensus       148 R~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~  227 (316)
T COG3204         148 RDRALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTAD  227 (316)
T ss_pred             hcceEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccc
Confidence            78888887766442211     111     2 456789999999999999888887888777643211000 00000000


Q ss_pred             ecccCcCeEEEEecC--CCEEEEeCCCCcEEEEeCCCCcEEEEEecc
Q 014475          265 LSDHSKAVTCLAYST--GDLLISGSEDGMVRVWDPITHNIVRMFRLA  309 (424)
Q Consensus       265 ~~~~~~~i~~~~~~~--~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~  309 (424)
                      ..-.-..|.++.|++  +.+++-+.+++.+.-.|.. |..+..+..+
T Consensus       228 ~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~-G~~~~~lsL~  273 (316)
T COG3204         228 RDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLS-GEVIELLSLT  273 (316)
T ss_pred             cceEeeccccceecCCCCcEEEEecCCceEEEEecC-CCeeeeEEec
Confidence            001124577888887  7788888888888888854 6666665543

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=97.06  E-value=0.0027  Score=37.68  Aligned_cols=35  Identities=11%  Similarity=0.177  Sum_probs=30.8

Q ss_pred             CCCCeeEEEECCCCCEEEEecCCCcEEEEEccCcce
Q 014475           79 PAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRL  114 (424)
Q Consensus        79 ~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~  114 (424)
                      ...+|.+++|+|...+||.|+.+|.|.+|.+ +++.
T Consensus        10 l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr   44 (47)
T PF12894_consen   10 LPSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR   44 (47)
T ss_pred             CCCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence            4567999999999999999999999999998 5543

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=97.06  E-value=0.0092  Score=59.03  Aligned_cols=155  Identities=12%  Similarity=0.016  Sum_probs=94.0

Q ss_pred             CeEEEEEccCCcEEEEe--eCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcE
Q 014475          124 AVTCLVFSEDGSFLISG--SEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTC  201 (424)
Q Consensus       124 ~i~~~~~~~~~~~l~s~--~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v  201 (424)
                      +|..+...+|+...++.  +.+-.|..||+++..........................++.|+|.-. ...+....|+.|
T Consensus       102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp-~n~av~l~dlsl  180 (1405)
T KOG3630|consen  102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVP-LNSAVDLSDLSL  180 (1405)
T ss_pred             cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCcc-chhhhhccccch
Confidence            45555556676554433  334478999997754433222111111112222334456677887654 455667778888


Q ss_pred             EEEecCCCc-eeeeeecCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecc-cCcCeEEEEecC
Q 014475          202 KVWSLLKGR-LLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSD-HSKAVTCLAYST  279 (424)
Q Consensus       202 ~iwd~~~~~-~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~  279 (424)
                      ++..+.... ....+......++++|+|.|+.+++|-..|++..|.........       +..... ....|.++.|-.
T Consensus       181 ~V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik~~-------ip~Pp~~e~yrvl~v~Wl~  253 (1405)
T KOG3630|consen  181 RVKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIKSE-------IPEPPVEENYRVLSVTWLS  253 (1405)
T ss_pred             hhhhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCeEEEeecccceeec-------ccCCCcCCCcceeEEEEec
Confidence            888765332 33344567789999999999999999999999998876542111       111111 147789999977


Q ss_pred             -CCEEEEe
Q 014475          280 -GDLLISG  286 (424)
Q Consensus       280 -~~~l~t~  286 (424)
                       ..++++-
T Consensus       254 t~eflvvy  261 (1405)
T KOG3630|consen  254 TQEFLVVY  261 (1405)
T ss_pred             ceeEEEEe
Confidence             5555543

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=97.04  E-value=0.13  Score=41.93  Aligned_cols=139  Identities=17%  Similarity=0.161  Sum_probs=83.8

Q ss_pred             cCceeEEEEEEcCceeEEEEEeC----------CCcEEEEecCCCceeeeeecCcceeEEEECCCCCEEEE-EeCCCcEE
Q 014475          175 TLRITDIVIGYGGVSATIVSASE----------DRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYA-GSRDGSIY  243 (424)
Q Consensus       175 ~~~i~~~~~~~~~~~~~l~~~~~----------d~~v~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~-~~~dg~i~  243 (424)
                      +.+.++-..+|+|  ++ ..|..          .|.++.|-.. ++.......-.--+.++|+.+.+.++. -+.+-.|.
T Consensus       108 knR~NDgkvdP~G--ry-y~GtMad~~~~le~~~g~Ly~~~~~-h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~  183 (310)
T KOG4499|consen  108 KNRLNDGKVDPDG--RY-YGGTMADFGDDLEPIGGELYSWLAG-HQVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVD  183 (310)
T ss_pred             hcccccCccCCCC--ce-eeeeeccccccccccccEEEEeccC-CCceeeehhccCCccccccccCcEEEEEccCceEEe
Confidence            3445556677777  55 33332          2334444321 222222223344567889887766654 45666786


Q ss_pred             EEE--cCCCCCCCCCcCceeeeeecc----cCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCCCcEEEEEeccCCCeeEE
Q 014475          244 IAA--LNAESPSTSSYGMHIIGSLSD----HSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNI  316 (424)
Q Consensus       244 i~d--~~~~~~~~~~~~~~~~~~~~~----~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l  316 (424)
                      -||  ..++......    .+..++.    .....-.++... |++.++.-..++|...|..+|+.+.+++.....|+++
T Consensus       184 a~dyd~~tG~~snr~----~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsc  259 (310)
T KOG4499|consen  184 AYDYDCPTGDLSNRK----VIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSC  259 (310)
T ss_pred             eeecCCCcccccCcc----eeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEE
Confidence            677  5554433321    1222211    111223345555 8888888889999999999999999999999999999


Q ss_pred             EEEec
Q 014475          317 LVVRR  321 (424)
Q Consensus       317 ~~s~~  321 (424)
                      +|--.
T Consensus       260 cFgGk  264 (310)
T KOG4499|consen  260 CFGGK  264 (310)
T ss_pred             EecCC
Confidence            99743

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=97.01  E-value=0.17  Score=46.17  Aligned_cols=82  Identities=16%  Similarity=0.225  Sum_probs=54.3

Q ss_pred             cceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcC----eE-------------EEEecC--
Q 014475          219 SVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKA----VT-------------CLAYST--  279 (424)
Q Consensus       219 ~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~----i~-------------~~~~~~--  279 (424)
                      ..+.+++.+|.+++.++...-|+|.++|+.....         +..+++-.+.    +.             ...-.+  
T Consensus       308 R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~v---------vrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~  378 (415)
T PF14655_consen  308 REGESICLSPSGRLAAVTDSLGRVLLIDVARGIV---------VRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRF  378 (415)
T ss_pred             ceEEEEEECCCCCEEEEEcCCCcEEEEECCCChh---------hhhhccCccceEEEEEeecccccccccccccCCCCcc
Confidence            4588999999999999988889999999988743         2222221110    00             000000  


Q ss_pred             CC-EEEEeCCCCcEEEEeCCCCcEEEEEecc
Q 014475          280 GD-LLISGSEDGMVRVWDPITHNIVRMFRLA  309 (424)
Q Consensus       280 ~~-~l~t~~~dg~i~iwd~~~~~~~~~~~~~  309 (424)
                      .. +++-+-.-|.|.||.+++|..+..+...
T Consensus       379 ~l~LvIyaprRg~lEvW~~~~g~Rv~a~~v~  409 (415)
T PF14655_consen  379 ALFLVIYAPRRGILEVWSMRQGPRVAAFNVG  409 (415)
T ss_pred             eEEEEEEeccCCeEEEEecCCCCEEEEEEeC
Confidence            11 3344567899999999999998888753

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=96.98  E-value=0.25  Score=44.15  Aligned_cols=226  Identities=12%  Similarity=0.052  Sum_probs=108.0

Q ss_pred             EECCCCCEEEEec-CCC--cEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhccccc
Q 014475           87 AANSHGTYIAGGG-QSG--DIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRA  163 (424)
Q Consensus        87 ~~s~~~~~l~~~~-~dg--~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~  163 (424)
                      +|.+||+.|+.++ .+|  .+.+.|+.+++..+.-.+.........++|+++.++-......|+-.|+++..        
T Consensus        42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e--------  113 (386)
T PF14583_consen   42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLE--------  113 (386)
T ss_dssp             -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT----------
T ss_pred             CcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCc--------
Confidence            4677886665544 344  57778888887665544322223346677888877665555688888987732        


Q ss_pred             ccceEEeecCCcCceeEEEEEEcCceeEEEEEe----------------------CCCcEEEEecCCCceeeeeecCcce
Q 014475          164 SHLYLHSFTGHTLRITDIVIGYGGVSATIVSAS----------------------EDRTCKVWSLLKGRLLRNIVFPSVI  221 (424)
Q Consensus       164 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~----------------------~d~~v~iwd~~~~~~~~~~~~~~~i  221 (424)
                       ...+.  ......+-...|..+.+...++-.-                      -...|.-.|+.+|+....+.....+
T Consensus       114 -~~~vy--~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~~~wl  190 (386)
T PF14583_consen  114 -ERVVY--EVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFEDTDWL  190 (386)
T ss_dssp             -EEEEE--E--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEESS-E
T ss_pred             -EEEEE--ECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEecCccc
Confidence             22222  2233333334454333323332211                      1234666788888877777778888


Q ss_pred             eEEEECCCCCEEEEEeCCC-----cEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEE-----eCCCC
Q 014475          222 DAIALDPAEHVFYAGSRDG-----SIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLIS-----GSEDG  290 (424)
Q Consensus       222 ~~~~~~~~~~~l~~~~~dg-----~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t-----~~~dg  290 (424)
                      ..+.++|....+++-+.+|     .-+||-++......     +++.... ....+..=-|.| |..|.-     ++.+.
T Consensus       191 gH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~-----~~v~~~~-~~e~~gHEfw~~DG~~i~y~~~~~~~~~~  264 (386)
T PF14583_consen  191 GHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNV-----KKVHRRM-EGESVGHEFWVPDGSTIWYDSYTPGGQDF  264 (386)
T ss_dssp             EEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS--------EESS----TTEEEEEEEE-TTSS-EEEEEEETTT--E
T ss_pred             cCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcc-----eeeecCC-CCcccccccccCCCCEEEEEeecCCCCce
Confidence            9999999766666655443     23666665543211     1111111 112233334666 554332     23355


Q ss_pred             cEEEEeCCCCcEEEEEeccCCCeeEEEEEecCceeeeccCC
Q 014475          291 MVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSFS  331 (424)
Q Consensus       291 ~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~d  331 (424)
                      .|.-+|+.+++.......  .+...+.-++||++++-=+.|
T Consensus       265 ~i~~~d~~t~~~~~~~~~--p~~~H~~ss~Dg~L~vGDG~d  303 (386)
T PF14583_consen  265 WIAGYDPDTGERRRLMEM--PWCSHFMSSPDGKLFVGDGGD  303 (386)
T ss_dssp             EEEEE-TTT--EEEEEEE---SEEEEEE-TTSSEEEEEE--
T ss_pred             EEEeeCCCCCCceEEEeC--CceeeeEEcCCCCEEEecCCC
Confidence            677788888765433222  245566667888887654443

>PHA02790 Kelch-like protein; Provisional

Probab=96.85  E-value=0.19  Score=47.66  Aligned_cols=183  Identities=11%  Similarity=0.057  Sum_probs=88.9

Q ss_pred             CCCEEEEecCCC-----cEEEEEccCcceee--eeccccCCeEEEEEccCCcEEEEeeCCC--cEEEEeCCcccchhccc
Q 014475           91 HGTYIAGGGQSG-----DIYMWEVASGRLLK--KWHAHYRAVTCLVFSEDGSFLISGSEDG--CVRIWSLLTVFEECESQ  161 (424)
Q Consensus        91 ~~~~l~~~~~dg-----~v~iwd~~~~~~~~--~~~~~~~~i~~~~~~~~~~~l~s~~~dg--~i~iwd~~~~~~~~~~~  161 (424)
                      ++..+++||.++     .+..||..+++-..  .+.........+.  -++...+.|+.++  .+..||..+        
T Consensus       271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~--~~~~iYviGG~~~~~sve~ydp~~--------  340 (480)
T PHA02790        271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVP--ANNKLYVVGGLPNPTSVERWFHGD--------  340 (480)
T ss_pred             CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEE--ECCEEEEECCcCCCCceEEEECCC--------
Confidence            456667777543     47778887764322  2222222222222  3677778887643  467777643        


Q ss_pred             ccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCC---cEEEEecCCCceeeeeec--CcceeEEEECCCCCEEEEE
Q 014475          162 RASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDR---TCKVWSLLKGRLLRNIVF--PSVIDAIALDPAEHVFYAG  236 (424)
Q Consensus       162 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~---~v~iwd~~~~~~~~~~~~--~~~i~~~~~~~~~~~l~~~  236 (424)
                       .....+..+.....  ......-++  ...+.|+.++   .+..||.++.+-...-..  +..-.+++ .-+++..+.|
T Consensus       341 -n~W~~~~~l~~~r~--~~~~~~~~g--~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~-~~~~~IYv~G  414 (480)
T PHA02790        341 -AAWVNMPSLLKPRC--NPAVASINN--VIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCAL-VFGRRLFLVG  414 (480)
T ss_pred             -CeEEECCCCCCCCc--ccEEEEECC--EEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEE-EECCEEEEEC
Confidence             11111111211111  111122344  6777777543   477888876543322111  11111221 2356666666


Q ss_pred             eCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecCCCEEEEeCCC-----CcEEEEeCCCC
Q 014475          237 SRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTGDLLISGSED-----GMVRVWDPITH  300 (424)
Q Consensus       237 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~t~~~d-----g~i~iwd~~~~  300 (424)
                         |...+||..+..       |..+..+....... +++...+.+.+.||.+     ..+..||..++
T Consensus       415 ---G~~e~ydp~~~~-------W~~~~~m~~~r~~~-~~~v~~~~IYviGG~~~~~~~~~ve~Yd~~~~  472 (480)
T PHA02790        415 ---RNAEFYCESSNT-------WTLIDDPIYPRDNP-ELIIVDNKLLLIGGFYRGSYIDTIEVYNNRTY  472 (480)
T ss_pred             ---CceEEecCCCCc-------EeEcCCCCCCcccc-EEEEECCEEEEECCcCCCcccceEEEEECCCC
Confidence               356788886653       34443332222222 2333347788888764     34566666544

>PHA03098 kelch-like protein; Provisional

Probab=96.82  E-value=0.14  Score=49.41  Aligned_cols=187  Identities=11%  Similarity=0.079  Sum_probs=88.6

Q ss_pred             CCCCEEEEecCCC------cEEEEEccCcceeee--eccccCCeEEEEEccCCcEEEEeeCCC-----cEEEEeCCcccc
Q 014475           90 SHGTYIAGGGQSG------DIYMWEVASGRLLKK--WHAHYRAVTCLVFSEDGSFLISGSEDG-----CVRIWSLLTVFE  156 (424)
Q Consensus        90 ~~~~~l~~~~~dg------~v~iwd~~~~~~~~~--~~~~~~~i~~~~~~~~~~~l~s~~~dg-----~i~iwd~~~~~~  156 (424)
                      .++..++.||.++      .+..||..+.+-...  +.........+.  -+++.++.||.++     .+..||..+.  
T Consensus       293 ~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~--~~~~lyv~GG~~~~~~~~~v~~yd~~~~--  368 (534)
T PHA03098        293 LNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTV--FNNRIYVIGGIYNSISLNTVESWKPGES--  368 (534)
T ss_pred             ECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEE--ECCEEEEEeCCCCCEecceEEEEcCCCC--
Confidence            3566677776543      477888877654221  111112222222  2577778887653     4667777542  


Q ss_pred             hhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCC------CcEEEEecCCCceeeeeecC--cceeEEEECC
Q 014475          157 ECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASED------RTCKVWSLLKGRLLRNIVFP--SVIDAIALDP  228 (424)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d------~~v~iwd~~~~~~~~~~~~~--~~i~~~~~~~  228 (424)
                             .......+...... .+++ ..++  ...+.|+.+      ..+..||+.+.+-...-..+  ..-.+++ ..
T Consensus       369 -------~W~~~~~lp~~r~~-~~~~-~~~~--~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~-~~  436 (534)
T PHA03098        369 -------KWREEPPLIFPRYN-PCVV-NVNN--LIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCAI-YH  436 (534)
T ss_pred             -------ceeeCCCcCcCCcc-ceEE-EECC--EEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceEE-EE
Confidence                   11111111111111 1112 2233  666777632      35788998765433221111  1111222 23


Q ss_pred             CCCEEEEEeCCC--------cEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecCCCEEEEeCCC-----CcEEEE
Q 014475          229 AEHVFYAGSRDG--------SIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTGDLLISGSED-----GMVRVW  295 (424)
Q Consensus       229 ~~~~l~~~~~dg--------~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~t~~~d-----g~i~iw  295 (424)
                      ++..++.|+.++        .+.+||..+..       |..+..+.........+.+ .+.+++.|+.+     ..+.+|
T Consensus       437 ~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~-------W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~y  508 (534)
T PHA03098        437 DGKIYVIGGISYIDNIKVYNIVESYNPVTNK-------WTELSSLNFPRINASLCIF-NNKIYVVGGDKYEYYINEIEVY  508 (534)
T ss_pred             CCEEEEECCccCCCCCcccceEEEecCCCCc-------eeeCCCCCcccccceEEEE-CCEEEEEcCCcCCcccceeEEE
Confidence            566666665432        37888887754       2222222111111122222 36677777654     357777


Q ss_pred             eCCCC
Q 014475          296 DPITH  300 (424)
Q Consensus       296 d~~~~  300 (424)
                      |..+.
T Consensus       509 d~~~~  513 (534)
T PHA03098        509 DDKTN  513 (534)
T ss_pred             eCCCC
Confidence            76654

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=96.80  E-value=0.63  Score=46.17  Aligned_cols=301  Identities=12%  Similarity=0.085  Sum_probs=144.6

Q ss_pred             ceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCceeee--ecCCCCeeEEEECCC
Q 014475           14 GIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVK--SLPAEPIKPIAANSH   91 (424)
Q Consensus        14 ~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~--~~~~~~v~~~~~s~~   91 (424)
                      .||+.+-.  .....+..    +.+.++..  .+.+...++.++.+ +.+...++........  ......|.|+.++|-
T Consensus       471 ~iRl~ss~--~~~~~W~~----p~~~ti~~--~~~n~sqVvvA~~~-~~l~y~~i~~~~l~e~~~~~~e~evaCLDisp~  541 (1096)
T KOG1897|consen  471 SIRLVSSA--GLRSEWRP----PGKITIGV--VSANASQVVVAGGG-LALFYLEIEDGGLREVSHKEFEYEVACLDISPL  541 (1096)
T ss_pred             cEEEEcch--hhhhcccC----CCceEEEE--EeecceEEEEecCc-cEEEEEEeeccceeeeeeheecceeEEEecccC
Confidence            46666633  23333432    23344333  44444556666654 6666666665553322  234678999999974


Q ss_pred             ---C---CEEEEecCCCcEEEEEc-cCcceeee--ecc--ccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcc
Q 014475           92 ---G---TYIAGGGQSGDIYMWEV-ASGRLLKK--WHA--HYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECES  160 (424)
Q Consensus        92 ---~---~~l~~~~~dg~v~iwd~-~~~~~~~~--~~~--~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~  160 (424)
                         .   +.+++|..+..+.+.-. .+...+..  +.+  -...|.-.+|-.|..+|.++..||.+.-|.+.........
T Consensus       542 ~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG~l~~fv~d~~tg~lsd  621 (1096)
T KOG1897|consen  542 GDAPNKSRLLAVGLWSDISMILTFLPDLILITHEQLSGEIIPRSILLTTFEGDIHYLLVALGDGALLYFVLDINTGQLSD  621 (1096)
T ss_pred             CCCCCcceEEEEEeecceEEEEEECCCcceeeeeccCCCccchheeeEEeeccceEEEEEcCCceEEEEEEEcccceEcc
Confidence               2   27888887766554433 22222211  111  1234555556556889999999999887765432111000


Q ss_pred             cccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeeecCcceeEEEECC-C-CCEEEEEeC
Q 014475          161 QRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDP-A-EHVFYAGSR  238 (424)
Q Consensus       161 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~i~~~~~~~-~-~~~l~~~~~  238 (424)
                             .+...-...|+.--.|+..+. ..+++ ..|.-..+|..+..-....+..+..-..+.|+. . +..++. ..
T Consensus       622 -------~Kk~~lGt~P~~Lr~f~sk~~-t~vfa-~sdrP~viY~~n~kLv~spls~kev~~~c~f~s~a~~d~l~~-~~  691 (1096)
T KOG1897|consen  622 -------RKKVTLGTQPISLRTFSSKSR-TAVFA-LSDRPTVIYSSNGKLVYSPLSLKEVNHMCPFNSDAYPDSLAS-AN  691 (1096)
T ss_pred             -------ccccccCCCCcEEEEEeeCCc-eEEEE-eCCCCEEEEecCCcEEEeccchHHhhhhcccccccCCceEEE-ec
Confidence                   011111233444344555442 33333 335555556543322222222222112222322 2 223333 34


Q ss_pred             CCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeC-----------CC---CcEEEEeCCCCcEE
Q 014475          239 DGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGS-----------ED---GMVRVWDPITHNIV  303 (424)
Q Consensus       239 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~-----------~d---g~i~iwd~~~~~~~  303 (424)
                      .+.+.+..++.-...       .+++.. -......+++.+ ...+.+.+           ..   ..++++|-++.+.+
T Consensus       692 ~~~l~i~tid~iqkl-------~irtvp-l~~~prrI~~q~~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~vl  763 (1096)
T KOG1897|consen  692 GGALTIGTIDEIQKL-------HIRTVP-LGESPRRICYQESSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFEVL  763 (1096)
T ss_pred             CCceEEEEecchhhc-------ceeeec-CCCChhheEecccceEEEEEecccccchhhcCCcceEEEEEEecCCceeEE
Confidence            556777666553211       111221 123334455544 33333222           11   24777887776655


Q ss_pred             EEEeccC----CCeeEEEEEec-Cceeeecc----------CCCceeeccCCC
Q 014475          304 RMFRLAK----GPVNNILVVRR-PLYLNLGS----------FSNPHTSSRRHG  341 (424)
Q Consensus       304 ~~~~~~~----~~v~~l~~s~~-~~~l~~~~----------~d~~i~iw~~~~  341 (424)
                      ...+...    -.+.++.|..| +.++++|+          ..|.|.++....
T Consensus       764 ~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e  816 (1096)
T KOG1897|consen  764 SSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEE  816 (1096)
T ss_pred             eeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEec
Confidence            5433211    14556668877 67777765          345566666554

>PRK10115 protease 2; Provisional

Probab=96.80  E-value=0.64  Score=46.14  Aligned_cols=240  Identities=9%  Similarity=-0.041  Sum_probs=113.9

Q ss_pred             CeeEEEECCCCCEEEEecC-----CCcEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEeeCC------CcEEEEe
Q 014475           82 PIKPIAANSHGTYIAGGGQ-----SGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSED------GCVRIWS  150 (424)
Q Consensus        82 ~v~~~~~s~~~~~l~~~~~-----dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d------g~i~iwd  150 (424)
                      .+..+.++||+++|+.+..     .-.|++.|+.++..+...-....  ..++|.+|++.|+....+      ..|..++
T Consensus       128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~--~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~  205 (686)
T PRK10115        128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVE--PSFVWANDSWTFYYVRKHPVTLLPYQVWRHT  205 (686)
T ss_pred             EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcc--eEEEEeeCCCEEEEEEecCCCCCCCEEEEEE
Confidence            4677889999999887632     23489999988864322211212  459999998877665442      3577788


Q ss_pred             CCcccchhcccccccceEEeecCCcCcee-EEEEEEcCceeEEEEEe---CCCcEEEEecC--CCceeeeeecCcceeEE
Q 014475          151 LLTVFEECESQRASHLYLHSFTGHTLRIT-DIVIGYGGVSATIVSAS---EDRTCKVWSLL--KGRLLRNIVFPSVIDAI  224 (424)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~~~l~~~~---~d~~v~iwd~~--~~~~~~~~~~~~~i~~~  224 (424)
                      +.++..       ....+.  ........ ....+.++  .+++..+   .++.+.+++..  +++....+.....+..-
T Consensus       206 lgt~~~-------~d~lv~--~e~~~~~~~~~~~s~d~--~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  274 (686)
T PRK10115        206 IGTPAS-------QDELVY--EEKDDTFYVSLHKTTSK--HYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYS  274 (686)
T ss_pred             CCCChh-------HCeEEE--eeCCCCEEEEEEEcCCC--CEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEE
Confidence            866321       111222  22122222 22222244  4433333   23568888843  34333333333222221


Q ss_pred             EECCCCCEEEEEeCC--CcEEEEEcCCCCCCCCCcCceeeeeeccc--CcCeEEEEecCCCEEEEeCCCCcEEEEeCCC-
Q 014475          225 ALDPAEHVFYAGSRD--GSIYIAALNAESPSTSSYGMHIIGSLSDH--SKAVTCLAYSTGDLLISGSEDGMVRVWDPIT-  299 (424)
Q Consensus       225 ~~~~~~~~l~~~~~d--g~i~i~d~~~~~~~~~~~~~~~~~~~~~~--~~~i~~~~~~~~~~l~t~~~dg~i~iwd~~~-  299 (424)
                      ..+.. ..++.-+..  ..-++..+.-...    ..++   .+..+  ...|..+.+..+.++++...+|.-+++-+.. 
T Consensus       275 ~~~~~-~~ly~~tn~~~~~~~l~~~~~~~~----~~~~---~l~~~~~~~~i~~~~~~~~~l~~~~~~~g~~~l~~~~~~  346 (686)
T PRK10115        275 LDHYQ-HRFYLRSNRHGKNFGLYRTRVRDE----QQWE---ELIPPRENIMLEGFTLFTDWLVVEERQRGLTSLRQINRK  346 (686)
T ss_pred             EEeCC-CEEEEEEcCCCCCceEEEecCCCc----ccCe---EEECCCCCCEEEEEEEECCEEEEEEEeCCEEEEEEEcCC
Confidence            22323 334433332  2333433322110    0112   22233  2367777777566666666777655544332 


Q ss_pred             CcEEEEEe-ccCCCeeEEEEE--ecCc-eeee-cc--CCCceeeccCCCC
Q 014475          300 HNIVRMFR-LAKGPVNNILVV--RRPL-YLNL-GS--FSNPHTSSRRHGS  342 (424)
Q Consensus       300 ~~~~~~~~-~~~~~v~~l~~s--~~~~-~l~~-~~--~d~~i~iw~~~~~  342 (424)
                      +..+..+. .....+..+.++  +++. ++++ .+  .-+.+..+|..+.
T Consensus       347 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~  396 (686)
T PRK10115        347 TREVIGIAFDDPAYVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTG  396 (686)
T ss_pred             CCceEEecCCCCceEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCC
Confidence            23344443 222223333344  3333 3332 22  3344666666544

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=96.76  E-value=0.38  Score=43.05  Aligned_cols=245  Identities=15%  Similarity=0.120  Sum_probs=119.4

Q ss_pred             CeeEEEECCCCCEEEEecCCCcEEEEEccCcce---eeee----ccccCCeEEEEEccC----CcEEEEeeCC-------
Q 014475           82 PIKPIAANSHGTYIAGGGQSGDIYMWEVASGRL---LKKW----HAHYRAVTCLVFSED----GSFLISGSED-------  143 (424)
Q Consensus        82 ~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~---~~~~----~~~~~~i~~~~~~~~----~~~l~s~~~d-------  143 (424)
                      ..+.|+|.|||+++++ ...|.|++++ ..+..   +..+    .........++++|+    +.+.++.+..       
T Consensus         3 ~P~~~a~~pdG~l~v~-e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~   80 (331)
T PF07995_consen    3 NPRSMAFLPDGRLLVA-ERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDN   80 (331)
T ss_dssp             SEEEEEEETTSCEEEE-ETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSE
T ss_pred             CceEEEEeCCCcEEEE-eCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCc
Confidence            4588999999987776 5589999999 44433   2222    224457899999994    4444433321       


Q ss_pred             -CcEEEEeCCcccchhcccccccceEEeec---CCcCceeEEEEEEcCceeEEEEEeCCCc-------------EEEEec
Q 014475          144 -GCVRIWSLLTVFEECESQRASHLYLHSFT---GHTLRITDIVIGYGGVSATIVSASEDRT-------------CKVWSL  206 (424)
Q Consensus       144 -g~i~iwd~~~~~~~~~~~~~~~~~~~~~~---~~~~~i~~~~~~~~~~~~~l~~~~~d~~-------------v~iwd~  206 (424)
                       ..|.-|.......  ... .....+....   .....-..|.|.|++  .+.++.+..+.             |.-.+.
T Consensus        81 ~~~v~r~~~~~~~~--~~~-~~~~l~~~~p~~~~~~H~g~~l~fgpDG--~LYvs~G~~~~~~~~~~~~~~~G~ilri~~  155 (331)
T PF07995_consen   81 DNRVVRFTLSDGDG--DLS-SEEVLVTGLPDTSSGNHNGGGLAFGPDG--KLYVSVGDGGNDDNAQDPNSLRGKILRIDP  155 (331)
T ss_dssp             EEEEEEEEEETTSC--EEE-EEEEEEEEEES-CSSSS-EEEEEE-TTS--EEEEEEB-TTTGGGGCSTTSSTTEEEEEET
T ss_pred             ceeeEEEeccCCcc--ccc-cceEEEEEeCCCCCCCCCCccccCCCCC--cEEEEeCCCCCcccccccccccceEEEecc
Confidence             1333344322100  000 1111111222   233445568999988  66665554332             222222


Q ss_pred             CCCce-------------eeeee-cCcceeEEEECCC-CCEEEEE-eCCCcEEEEEcCCCCCC----------C------
Q 014475          207 LKGRL-------------LRNIV-FPSVIDAIALDPA-EHVFYAG-SRDGSIYIAALNAESPS----------T------  254 (424)
Q Consensus       207 ~~~~~-------------~~~~~-~~~~i~~~~~~~~-~~~l~~~-~~dg~i~i~d~~~~~~~----------~------  254 (424)
                      . ++.             ...+. .-.....++|+|. +.++++= +.++.=.|.-+..+..-          .      
T Consensus       156 d-G~~p~dnP~~~~~~~~~~i~A~GlRN~~~~~~d~~tg~l~~~d~G~~~~dein~i~~G~nYGWP~~~~~~~~~~~~~~  234 (331)
T PF07995_consen  156 D-GSIPADNPFVGDDGADSEIYAYGLRNPFGLAFDPNTGRLWAADNGPDGWDEINRIEPGGNYGWPYCEGGPKYSGPPIG  234 (331)
T ss_dssp             T-SSB-TTSTTTTSTTSTTTEEEE--SEEEEEEEETTTTEEEEEEE-SSSSEEEEEE-TT-B--TTTBSSSCSTTSS-EC
T ss_pred             c-CcCCCCCccccCCCceEEEEEeCCCccccEEEECCCCcEEEEccCCCCCcEEEEeccCCcCCCCCCcCCCCCCCCccc
Confidence            1 110             00111 1124567899998 6555432 22332233333222110          0      


Q ss_pred             ----CCcCceeeeeecccCcCeEEEEecC--------CCEEEEeCCCCcEEEEeCCCCcEEEE---E-eccCCCeeEEEE
Q 014475          255 ----SSYGMHIIGSLSDHSKAVTCLAYST--------GDLLISGSEDGMVRVWDPITHNIVRM---F-RLAKGPVNNILV  318 (424)
Q Consensus       255 ----~~~~~~~~~~~~~~~~~i~~~~~~~--------~~~l~t~~~dg~i~iwd~~~~~~~~~---~-~~~~~~v~~l~~  318 (424)
                          ......+...+..| ..+..+.|..        +.++++.-..+.|....+..+..+..   + ......+..+++
T Consensus       235 ~~~~~~~~~~P~~~~~~~-~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~  313 (331)
T PF07995_consen  235 DAPSCPGFVPPVFAYPPH-SAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQ  313 (331)
T ss_dssp             TGSS-TTS---SEEETTT---EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEE
T ss_pred             cccCCCCcCccceeecCc-cccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEE
Confidence                00001233334434 5566676653        44666666677888888765533322   2 223347999999


Q ss_pred             EecCceeeeccCCCcee
Q 014475          319 VRRPLYLNLGSFSNPHT  335 (424)
Q Consensus       319 s~~~~~l~~~~~d~~i~  335 (424)
                      .|||.+.++...+|.|.
T Consensus       314 ~pDG~Lyv~~d~~G~iy  330 (331)
T PF07995_consen  314 GPDGALYVSDDSDGKIY  330 (331)
T ss_dssp             ETTSEEEEEE-TTTTEE
T ss_pred             cCCCeEEEEECCCCeEe
Confidence            99999988888888764

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=96.74  E-value=0.28  Score=41.36  Aligned_cols=180  Identities=13%  Similarity=0.080  Sum_probs=105.1

Q ss_pred             eecCCCccccCCCC-ceeEEEEECCCCceeeeecCCCCe--eEEEECCCCCEEEEecCCCcEEEEEccCcceeeeecccc
Q 014475           46 FLASSQLREQPSAS-SGSILYWSWSKPQVEVKSLPAEPI--KPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHY  122 (424)
Q Consensus        46 ~~~~~~~l~~~~~~-~g~i~vwd~~~~~~~~~~~~~~~v--~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~  122 (424)
                      |..+|.++-++|.. ...|+.+|+.+++...........  ..++.. +++.....-.++...+||..+.+.+.++.- .
T Consensus        52 ~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~-~d~l~qLTWk~~~~f~yd~~tl~~~~~~~y-~  129 (264)
T PF05096_consen   52 FLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL-GDKLYQLTWKEGTGFVYDPNTLKKIGTFPY-P  129 (264)
T ss_dssp             EEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE-TTEEEEEESSSSEEEEEETTTTEEEEEEE--S
T ss_pred             ecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE-CCEEEEEEecCCeEEEEccccceEEEEEec-C
Confidence            76788887777655 248999999998876444332222  233333 334444456789999999999888888753 3


Q ss_pred             CCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEE
Q 014475          123 RAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCK  202 (424)
Q Consensus       123 ~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~  202 (424)
                      +.=+.++.  +++.|+.......+..+|..+......      ..+..-...-..++.+.+. ++  ...+=.-....|.
T Consensus       130 ~EGWGLt~--dg~~Li~SDGS~~L~~~dP~~f~~~~~------i~V~~~g~pv~~LNELE~i-~G--~IyANVW~td~I~  198 (264)
T PF05096_consen  130 GEGWGLTS--DGKRLIMSDGSSRLYFLDPETFKEVRT------IQVTDNGRPVSNLNELEYI-NG--KIYANVWQTDRIV  198 (264)
T ss_dssp             SS--EEEE--CSSCEEEE-SSSEEEEE-TTT-SEEEE------EE-EETTEE---EEEEEEE-TT--EEEEEETTSSEEE
T ss_pred             CcceEEEc--CCCEEEEECCccceEEECCcccceEEE------EEEEECCEECCCcEeEEEE-cC--EEEEEeCCCCeEE
Confidence            45577773  566676666666899999866322110      0111001112234555554 33  5555555667788


Q ss_pred             EEecCCCceeeeeec----------------CcceeEEEECCCCCEEEEEeC
Q 014475          203 VWSLLKGRLLRNIVF----------------PSVIDAIALDPAEHVFYAGSR  238 (424)
Q Consensus       203 iwd~~~~~~~~~~~~----------------~~~i~~~~~~~~~~~l~~~~~  238 (424)
                      ..|..+|+....+..                ..-.+.++++|....|++.+.
T Consensus       199 ~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK  250 (264)
T PF05096_consen  199 RIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGK  250 (264)
T ss_dssp             EEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEET
T ss_pred             EEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeC
Confidence            888888887776631                245889999997766665553

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.74  E-value=0.34  Score=43.65  Aligned_cols=151  Identities=10%  Similarity=0.087  Sum_probs=91.6

Q ss_pred             eecCCCccccCCCCceeEEEEECCCCce----eeeecCCCCeeEEEECCCCCEEEEecCCCcEEEEEccCcceee----e
Q 014475           46 FLASSQLREQPSASSGSILYWSWSKPQV----EVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLK----K  117 (424)
Q Consensus        46 ~~~~~~~l~~~~~~~g~i~vwd~~~~~~----~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~----~  117 (424)
                      |-.|.+..+.+... |.+.=|-+.....    .......++|.++.||+|.+.+|+--.+..|.+++....+...    +
T Consensus        29 FfDDaNkqlfavrS-ggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~  107 (657)
T KOG2377|consen   29 FFDDANKQLFAVRS-GGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQE  107 (657)
T ss_pred             eeccCcceEEEEec-CCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHH
Confidence            44444444434333 6667676654432    2334467899999999999999999999999999985443322    2


Q ss_pred             eccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeC
Q 014475          118 WHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASE  197 (424)
Q Consensus       118 ~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~  197 (424)
                      .+.....|....|+.+ .-++.-+..| +-+|....          ....++..+.|+..|+-..|+++..--.++++-.
T Consensus       108 ck~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~p----------ekrslRlVks~~~nvnWy~yc~et~v~LL~t~~~  175 (657)
T KOG2377|consen  108 CKTKNANILGFCWTSS-TEIAFITDQG-IEFYQVLP----------EKRSLRLVKSHNLNVNWYMYCPETAVILLSTTVL  175 (657)
T ss_pred             hccCcceeEEEEEecC-eeEEEEecCC-eEEEEEch----------hhhhhhhhhhcccCccEEEEccccceEeeecccc
Confidence            2334456899999865 4455554444 66666532          2223445567788888888888763122223324


Q ss_pred             CCcEEEEecCCC
Q 014475          198 DRTCKVWSLLKG  209 (424)
Q Consensus       198 d~~v~iwd~~~~  209 (424)
                      .+++.=+-++++
T Consensus       176 ~n~lnpf~~~~~  187 (657)
T KOG2377|consen  176 ENVLNPFHFRAG  187 (657)
T ss_pred             ccccccEEEeec
Confidence            445544545444

>COG5276 Uncharacterized conserved protein [Function unknown]

Probab=96.73  E-value=0.3  Score=41.42  Aligned_cols=265  Identities=10%  Similarity=0.015  Sum_probs=146.2

Q ss_pred             CCccccCCCCceeEEEEECCCCceeeeec--CC-CCeeEEEECCCCCEEEEecCCCcEEEEEccCcc---eeeeeccccC
Q 014475           50 SQLREQPSASSGSILYWSWSKPQVEVKSL--PA-EPIKPIAANSHGTYIAGGGQSGDIYMWEVASGR---LLKKWHAHYR  123 (424)
Q Consensus        50 ~~~l~~~~~~~g~i~vwd~~~~~~~~~~~--~~-~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~---~~~~~~~~~~  123 (424)
                      +++...+..+ .-+++.|+.++.......  .. +--.++..  .|++..++..|.-+.+.|+.+.+   ....+.....
T Consensus        96 e~yvyvad~s-sGL~IvDIS~P~sP~~~~~lnt~gyaygv~v--sGn~aYVadlddgfLivdvsdpssP~lagrya~~~~  172 (370)
T COG5276          96 EEYVYVADWS-SGLRIVDISTPDSPTLIGFLNTDGYAYGVYV--SGNYAYVADLDDGFLIVDVSDPSSPQLAGRYALPGG  172 (370)
T ss_pred             ccEEEEEcCC-CceEEEeccCCCCcceeccccCCceEEEEEe--cCCEEEEeeccCcEEEEECCCCCCceeeeeeccCCC
Confidence            3444444444 678999998776544332  22 33444444  48888888766668888886543   3344444445


Q ss_pred             CeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEE
Q 014475          124 AVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKV  203 (424)
Q Consensus       124 ~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~i  203 (424)
                      .-..++.+  |++-..+..|+-+.+-|+.+..        ....+.... ....+.++..+++.  .+ ++.. +.-+.+
T Consensus       173 d~~~v~IS--Gn~AYvA~~d~GL~ivDVSnp~--------sPvli~~~n-~g~g~~sv~vsdnr--~y-~vvy-~egvli  237 (370)
T COG5276         173 DTHDVAIS--GNYAYVAWRDGGLTIVDVSNPH--------SPVLIGSYN-TGPGTYSVSVSDNR--AY-LVVY-DEGVLI  237 (370)
T ss_pred             CceeEEEe--cCeEEEEEeCCCeEEEEccCCC--------CCeEEEEEe-cCCceEEEEecCCe--eE-EEEc-ccceEE
Confidence            55677777  6777777889999999997621        222222221 22255666655542  33 3333 334777


Q ss_pred             EecCCCceeeeee--cCcceeEE-EECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecCC
Q 014475          204 WSLLKGRLLRNIV--FPSVIDAI-ALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTG  280 (424)
Q Consensus       204 wd~~~~~~~~~~~--~~~~i~~~-~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  280 (424)
                      -|..+.+....+.  ....+.++ .+.-.+++.+....+.-+.+-|+.+....      .....+......-..+... +
T Consensus       238 vd~s~~ssp~~~gsyet~~p~~~s~v~Vs~~~~Yvadga~gl~~idisnp~sp------fl~ss~~t~g~~a~gi~ay-~  310 (370)
T COG5276         238 VDVSGPSSPTVFGSYETSNPVSISTVPVSGEYAYVADGAKGLPIIDISNPPSP------FLSSSLDTAGYQAAGIRAY-G  310 (370)
T ss_pred             EecCCCCCceEeeccccCCcccccceecccceeeeeccccCceeEeccCCCCC------chhccccCCCccccceEEe-c
Confidence            7877666444443  22222222 23335677777777777778887765311      1111111111122233322 4


Q ss_pred             CEEEEeCCCCcEEEEeCCCCcEEEEEeccCCCeeEEEEEecCceeeeccCCCceeeccCC
Q 014475          281 DLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRH  340 (424)
Q Consensus       281 ~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~d~~i~iw~~~  340 (424)
                      .++..+..+ ...+-+....+......+....+.+.+.+-+.+.+-+...++.+.+|+..
T Consensus       311 ~y~yiadkn-~g~vV~~s~~s~m~~~~g~~ti~~s~~v~~~~q~~y~~d~~~gl~i~~~~  369 (370)
T COG5276         311 NYNYIADKN-TGAVVDASPPSMMDKRPGRPTIGQSCDVSVDTQIIYSTDYNGGLSIIEYL  369 (370)
T ss_pred             CeeEeccCC-ceEEEeCCChhhcccccCcceEeeecceEEEeeEEEEeecCCCEEEEEec
Confidence            555555444 44455554443333333333345555666666788888899999999854

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=96.66  E-value=0.41  Score=47.66  Aligned_cols=240  Identities=9%  Similarity=-0.015  Sum_probs=121.4

Q ss_pred             CCEEEEecCCCcEEEEEccCcceeeeeccccCC--------eEEEEEcc----------------CCcEEEEeeCCCcEE
Q 014475           92 GTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRA--------VTCLVFSE----------------DGSFLISGSEDGCVR  147 (424)
Q Consensus        92 ~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~--------i~~~~~~~----------------~~~~l~s~~~dg~i~  147 (424)
                      +..+..++.++.|.-.|.++|+.+-++......        ...+.+..                .+..++.++.|+.+.
T Consensus       194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li  273 (764)
T TIGR03074       194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI  273 (764)
T ss_pred             CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence            556777778889999999999988776532211        12233321                234788888899999


Q ss_pred             EEeCCcccchhcccccccceEE-eecCCcC---ceeEEEEEEcCceeEEEEEeC----------CCcEEEEecCCCceee
Q 014475          148 IWSLLTVFEECESQRASHLYLH-SFTGHTL---RITDIVIGYGGVSATIVSASE----------DRTCKVWSLLKGRLLR  213 (424)
Q Consensus       148 iwd~~~~~~~~~~~~~~~~~~~-~~~~~~~---~i~~~~~~~~~~~~~l~~~~~----------d~~v~iwd~~~~~~~~  213 (424)
                      -.|.+++............... .+.....   .+++--.-.+   ..++.|+.          +|.|+-+|.++|+.+.
T Consensus       274 ALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~---g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W  350 (764)
T TIGR03074       274 ALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAG---TTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVW  350 (764)
T ss_pred             EEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEEC---CEEEEEecccccccccCCCcEEEEEECCCCcEee
Confidence            9999876543221111000000 0000000   0111001112   35555542          6889999999999998


Q ss_pred             eeecCcceeEEEECCCCCEEEEEeCCC-cEEEEEcCCCCCCCCCcCceeeeeecccCcC-eEEEEecCCCEEEEeCCCCc
Q 014475          214 NIVFPSVIDAIALDPAEHVFYAGSRDG-SIYIAALNAESPSTSSYGMHIIGSLSDHSKA-VTCLAYSTGDLLISGSEDGM  291 (424)
Q Consensus       214 ~~~~~~~i~~~~~~~~~~~l~~~~~dg-~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~-i~~~~~~~~~~l~t~~~dg~  291 (424)
                      .+....+...- .-+.+.....++.+. ...-+|.+.+.          +..-.+...+ ...-.-.++    ..-..+.
T Consensus       351 ~~~~g~p~~~~-~~~~g~~~~~gg~n~W~~~s~D~~~gl----------vy~ptGn~~pd~~g~~r~~~----~n~y~~s  415 (764)
T TIGR03074       351 AWDPGNPDPTA-PPAPGETYTRNTPNSWSVASYDEKLGL----------VYLPMGNQTPDQWGGDRTPA----DEKYSSS  415 (764)
T ss_pred             EEecCCCCccc-CCCCCCEeccCCCCccCceEEcCCCCe----------EEEeCCCccccccCCccccC----cccccce
Confidence            88632221110 011233222222111 23333333321          1111111110 000000011    1123566


Q ss_pred             EEEEeCCCCcEEEEEeccCCCe---------eEEEEEe-cCc---eeeeccCCCceeeccCCCCCCCCCcc
Q 014475          292 VRVWDPITHNIVRMFRLAKGPV---------NNILVVR-RPL---YLNLGSFSNPHTSSRRHGSQLPPPLD  349 (424)
Q Consensus       292 i~iwd~~~~~~~~~~~~~~~~v---------~~l~~s~-~~~---~l~~~~~d~~i~iw~~~~~~~~~~~~  349 (424)
                      |.-.|.++|+..-.++.....+         .-+.+.. +|+   .++.++.+|.+.+.|..++++.-+.+
T Consensus       416 lvALD~~TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~~  486 (764)
T TIGR03074       416 LVALDATTGKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPVE  486 (764)
T ss_pred             EEEEeCCCCceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeece
Confidence            7778888888877766421111         1122322 553   78899999999999999888765543

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=96.64  E-value=0.0096  Score=35.33  Aligned_cols=34  Identities=24%  Similarity=0.442  Sum_probs=30.3

Q ss_pred             ecCcceeEEEECCCCCEEEEEeCCCcEEEEEcCC
Q 014475          216 VFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNA  249 (424)
Q Consensus       216 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~  249 (424)
                      ..+..|..++|+|...++|.++.+|.|.++.++-
T Consensus         9 ~l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~~   42 (47)
T PF12894_consen    9 NLPSRVSCMSWCPTMDLIALGTEDGEVLVYRLNW   42 (47)
T ss_pred             CCCCcEEEEEECCCCCEEEEEECCCeEEEEECCC
Confidence            3567799999999999999999999999999943

>PHA03098 kelch-like protein; Provisional

Probab=96.59  E-value=0.24  Score=47.79  Aligned_cols=133  Identities=12%  Similarity=0.175  Sum_probs=65.4

Q ss_pred             ceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCCCc----eeEEEEECCCCceeeeecCCCCe-eEEEE
Q 014475           14 GIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASS----GSILYWSWSKPQVEVKSLPAEPI-KPIAA   88 (424)
Q Consensus        14 ~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~----g~i~vwd~~~~~~~~~~~~~~~v-~~~~~   88 (424)
                      .+..||..+.+.. .+.....+.....+    ...+++..+.||.++    ..+..||..+.+.........+. .....
T Consensus       312 ~v~~yd~~~~~W~-~~~~~~~~R~~~~~----~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~  386 (534)
T PHA03098        312 SVVSYDTKTKSWN-KVPELIYPRKNPGV----TVFNNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNPCVV  386 (534)
T ss_pred             cEEEEeCCCCeee-ECCCCCcccccceE----EEECCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccceEE
Confidence            5778888776653 22222111111111    234677777777541    35777887765533221111111 11111


Q ss_pred             CCCCCEEEEecCC------CcEEEEEccCcceee--eeccccCCeEEEEEccCCcEEEEeeCCC--------cEEEEeCC
Q 014475           89 NSHGTYIAGGGQS------GDIYMWEVASGRLLK--KWHAHYRAVTCLVFSEDGSFLISGSEDG--------CVRIWSLL  152 (424)
Q Consensus        89 s~~~~~l~~~~~d------g~v~iwd~~~~~~~~--~~~~~~~~i~~~~~~~~~~~l~s~~~dg--------~i~iwd~~  152 (424)
                      .-+++..+.||.+      ..+..||+.+++-..  .+....... ++.. .++..++.|+.++        .+.+||..
T Consensus       387 ~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~-~~~~-~~~~iyv~GG~~~~~~~~~~~~v~~yd~~  464 (534)
T PHA03098        387 NVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGG-CAIY-HDGKIYVIGGISYIDNIKVYNIVESYNPV  464 (534)
T ss_pred             EECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCc-eEEE-ECCEEEEECCccCCCCCcccceEEEecCC
Confidence            2356777777632      358889987654322  121111111 2222 3566777776432        37788886


Q ss_pred             c
Q 014475          153 T  153 (424)
Q Consensus       153 ~  153 (424)
                      +
T Consensus       465 ~  465 (534)
T PHA03098        465 T  465 (534)
T ss_pred             C
Confidence            5

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=96.46  E-value=0.56  Score=42.49  Aligned_cols=226  Identities=12%  Similarity=0.090  Sum_probs=99.1

Q ss_pred             EEeecCCCCCceEEEeCCC----CceEEEeeCCC-------CCCCceEEecceeecCCCccccCCCC-----ceeEEEEE
Q 014475            4 LIASSSVADTGIGCWDLES----GAEQLRYKSCA-------SPPHGLACVGQRFLASSQLREQPSAS-----SGSILYWS   67 (424)
Q Consensus         4 ~lat~~~~dg~i~vwd~~~----~~~~~~~~~~~-------~~~~~v~~~~~~~~~~~~~l~~~~~~-----~g~i~vwd   67 (424)
                      +++-+= ..+.|.|.|+.+    .+..+.+....       +.+..+.     -.|+|+.++++-.+     -|.+.+.|
T Consensus        90 Li~PgL-~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~H-----clp~G~imIS~lGd~~G~g~Ggf~llD  163 (461)
T PF05694_consen   90 LILPGL-RSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVH-----CLPDGRIMISALGDADGNGPGGFVLLD  163 (461)
T ss_dssp             EEEEBT-TT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEE-----E-SS--EEEEEEEETTS-S--EEEEE-
T ss_pred             EEeeee-ccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceee-----ecCCccEEEEeccCCCCCCCCcEEEEc
Confidence            455555 678999999884    34445554210       1111222     34677666655211     16788888


Q ss_pred             CCCCceeeeecC----CCCeeEEEECCCCCEEEEec--------------------CCCcEEEEEccCcceeeeecccc-
Q 014475           68 WSKPQVEVKSLP----AEPIKPIAANSHGTYIAGGG--------------------QSGDIYMWEVASGRLLKKWHAHY-  122 (424)
Q Consensus        68 ~~~~~~~~~~~~----~~~v~~~~~s~~~~~l~~~~--------------------~dg~v~iwd~~~~~~~~~~~~~~-  122 (424)
                      -++.++.-....    ..--..+-|.|..+.+++..                    ...++.+||+.+.+.++++.-.. 
T Consensus       164 ~~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~  243 (461)
T PF05694_consen  164 GETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEE  243 (461)
T ss_dssp             TTT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TT
T ss_pred             CccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCC
Confidence            776665533322    22345666778777777753                    23569999999999999886433 


Q ss_pred             -CCeEEEEEccC--CcE-EEEeeCCCcEEEEeC-Ccccchhcc-cccccc---------eEEeecCCcCceeEEEEEEcC
Q 014475          123 -RAVTCLVFSED--GSF-LISGSEDGCVRIWSL-LTVFEECES-QRASHL---------YLHSFTGHTLRITDIVIGYGG  187 (424)
Q Consensus       123 -~~i~~~~~~~~--~~~-l~s~~~dg~i~iwd~-~~~~~~~~~-~~~~~~---------~~~~~~~~~~~i~~~~~~~~~  187 (424)
                       ..+..+.|..+  ..+ ++.+...++|..|-- +.+.-..+. ......         .++.+..-..-|++|.++.+.
T Consensus       244 g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDD  323 (461)
T PF05694_consen  244 GQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDD  323 (461)
T ss_dssp             EEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS
T ss_pred             CCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCC
Confidence             34667777643  333 444444445544432 221100000 000000         000111113457899999887


Q ss_pred             ceeEEEEE-eCCCcEEEEecCCCc---eeeeeecC-----------------cceeEEEECCCCCEEEEEe
Q 014475          188 VSATIVSA-SEDRTCKVWSLLKGR---LLRNIVFP-----------------SVIDAIALDPAEHVFYAGS  237 (424)
Q Consensus       188 ~~~~l~~~-~~d~~v~iwd~~~~~---~~~~~~~~-----------------~~i~~~~~~~~~~~l~~~~  237 (424)
                        ++|..+ -..|.|+.||+....   +...+...                 +....+..|.||+.|++.+
T Consensus       324 --rfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTn  392 (461)
T PF05694_consen  324 --RFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTN  392 (461)
T ss_dssp             ---EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE-
T ss_pred             --CEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEEe
Confidence              565544 468999999997643   23222222                 2347788888888887764

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=96.39  E-value=0.16  Score=48.66  Aligned_cols=108  Identities=16%  Similarity=0.167  Sum_probs=70.8

Q ss_pred             eEEEEEeCCCcEEEEecCCCceeeeeec--CcceeEEEEC--CCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeee-
Q 014475          190 ATIVSASEDRTCKVWSLLKGRLLRNIVF--PSVIDAIALD--PAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGS-  264 (424)
Q Consensus       190 ~~l~~~~~d~~v~iwd~~~~~~~~~~~~--~~~i~~~~~~--~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~-  264 (424)
                      +..++-+....+.|||.+.+........  .+.|..+.|.  |+++.+++.+-.+.|.+|.-...........+.++.. 
T Consensus        42 k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p~w~~i~~i  121 (631)
T PF12234_consen   42 KIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGPSWAPIRKI  121 (631)
T ss_pred             cEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCcccceeEEE
Confidence            4444444456799999998876655554  7899999985  5888888888889999987643222222222233332 


Q ss_pred             -ecccC-cCeEEEEecCCCEEEEeCCCCcEEEEeCC
Q 014475          265 -LSDHS-KAVTCLAYSTGDLLISGSEDGMVRVWDPI  298 (424)
Q Consensus       265 -~~~~~-~~i~~~~~~~~~~l~t~~~dg~i~iwd~~  298 (424)
                       +..|. .+|.+..|.++..+++|+ ++.+.|+|-.
T Consensus       122 ~i~~~T~h~Igds~Wl~~G~LvV~s-GNqlfv~dk~  156 (631)
T PF12234_consen  122 DISSHTPHPIGDSIWLKDGTLVVGS-GNQLFVFDKW  156 (631)
T ss_pred             EeecCCCCCccceeEecCCeEEEEe-CCEEEEECCC
Confidence             23343 678999999955555554 4568888743

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=96.31  E-value=0.6  Score=40.00  Aligned_cols=223  Identities=14%  Similarity=0.119  Sum_probs=124.7

Q ss_pred             CeeEEEECCCCCEEEEecCCCcEEEEEccC------c-ceeeeecc-----ccCCeEEEEEccCCc------------EE
Q 014475           82 PIKPIAANSHGTYIAGGGQSGDIYMWEVAS------G-RLLKKWHA-----HYRAVTCLVFSEDGS------------FL  137 (424)
Q Consensus        82 ~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~------~-~~~~~~~~-----~~~~i~~~~~~~~~~------------~l  137 (424)
                      .-+.|+++|.+.+-++....+...+||...      . .++..+..     .....+.+.|+....            .+
T Consensus        24 N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~F  103 (336)
T TIGR03118        24 NAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRF  103 (336)
T ss_pred             ccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeE
Confidence            457899999998888888888999999861      1 22333331     234577788764322            36


Q ss_pred             EEeeCCCcEEEEeCCcccchhcccccccceEEeec-CCcCc-eeEEEEEEcCceeEEE-EEeCCCcEEEEecCCCceee-
Q 014475          138 ISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFT-GHTLR-ITDIVIGYGGVSATIV-SASEDRTCKVWSLLKGRLLR-  213 (424)
Q Consensus       138 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~-~~~~~-i~~~~~~~~~~~~~l~-~~~~d~~v~iwd~~~~~~~~-  213 (424)
                      +.+++||+|.-|...-....      -......+. ..... -..+++...+.+.+|. +--..++|.++|-.-.+... 
T Consensus       104 if~tEdGTisaW~p~v~~t~------~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~  177 (336)
T TIGR03118       104 LFVTEDGTLSGWAPALGTTR------MTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLP  177 (336)
T ss_pred             EEEeCCceEEeecCcCCccc------ccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCC
Confidence            77889999999986321100      000111111 11122 2345555443224444 44467889999854332211 


Q ss_pred             -eeecC--------cce---------eEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeec--ccCcCeE
Q 014475          214 -NIVFP--------SVI---------DAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLS--DHSKAVT  273 (424)
Q Consensus       214 -~~~~~--------~~i---------~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~--~~~~~i~  273 (424)
                       .+..+        -.|         +-..-.++.+.=+.|..-|.|-+||....          .++.+.  +.-....
T Consensus       178 g~F~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~G~----------l~~r~as~g~LNaPW  247 (336)
T TIGR03118       178 GSFIDPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLNGQ----------LLRRVASSGRLNAPW  247 (336)
T ss_pred             CCccCCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCCCc----------EEEEeccCCcccCCc
Confidence             11100        011         11111222222233344468888888773          344442  2334455


Q ss_pred             EEEecC-------CCEEEEeCCCCcEEEEeCCCCcEEEEEeccCC------CeeEEEEEe
Q 014475          274 CLAYST-------GDLLISGSEDGMVRVWDPITHNIVRMFRLAKG------PVNNILVVR  320 (424)
Q Consensus       274 ~~~~~~-------~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~------~v~~l~~s~  320 (424)
                      .|+..|       +.+|+---.||+|..||..+++.+..+....+      .++.|.|-.
T Consensus       248 G~a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG~~~g~L~~~~G~pi~i~GLWgL~fGn  307 (336)
T TIGR03118       248 GLAIAPESFGSLSGALLVGNFGDGTINAYDPQSGAQLGQLLDPDNHPVKVDGLWSLTFGN  307 (336)
T ss_pred             eeeeChhhhCCCCCCeEEeecCCceeEEecCCCCceeeeecCCCCCeEEecCeEEeeeCC
Confidence            566644       45666666799999999999998888876544      456777754

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=96.21  E-value=0.29  Score=47.01  Aligned_cols=119  Identities=18%  Similarity=0.172  Sum_probs=73.6

Q ss_pred             CeeEEEECCCCCEEEEecCCCcEEEEEccCcceeeeec-cccCCeEEEEEc--cCCcEEEEeeCCCcEEEEeCCcccchh
Q 014475           82 PIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWH-AHYRAVTCLVFS--EDGSFLISGSEDGCVRIWSLLTVFEEC  158 (424)
Q Consensus        82 ~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~-~~~~~i~~~~~~--~~~~~l~s~~~dg~i~iwd~~~~~~~~  158 (424)
                      ...-+.-|.-++..++-+....+.|||.+.+.....-. ...+.|.++.|.  |+++.+++.+..+.|.++.-....-..
T Consensus        31 ~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~  110 (631)
T PF12234_consen   31 NPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTN  110 (631)
T ss_pred             CcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhc
Confidence            44445555555555554445579999998886443322 346889999995  588999998999999998653211110


Q ss_pred             cccccccceEEe--ecCCc-CceeEEEEEEcCceeEEEEEeCCCcEEEEec
Q 014475          159 ESQRASHLYLHS--FTGHT-LRITDIVIGYGGVSATIVSASEDRTCKVWSL  206 (424)
Q Consensus       159 ~~~~~~~~~~~~--~~~~~-~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~  206 (424)
                        ..+...++..  +..++ .+|.+..|.++|   .+++|+ ++.+.++|-
T Consensus       111 --~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G---~LvV~s-GNqlfv~dk  155 (631)
T PF12234_consen  111 --KGPSWAPIRKIDISSHTPHPIGDSIWLKDG---TLVVGS-GNQLFVFDK  155 (631)
T ss_pred             --CCcccceeEEEEeecCCCCCccceeEecCC---eEEEEe-CCEEEEECC
Confidence              1112222222  23333 678999999987   444444 456888874

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.21  E-value=0.9  Score=43.77  Aligned_cols=177  Identities=10%  Similarity=0.106  Sum_probs=90.7

Q ss_pred             eeEEEEECCCCceeeeecCCCCeeEEEECCCCCEEEEecCCCcEEEEEccCcceeeee----ccccCCeEEEEEccCCcE
Q 014475           61 GSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKW----HAHYRAVTCLVFSEDGSF  136 (424)
Q Consensus        61 g~i~vwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~----~~~~~~i~~~~~~~~~~~  136 (424)
                      -.|+|++..+.......-...++..+.|+.+..+|+ ...+|++++|++- |+.+...    ......|..+.+..+|-.
T Consensus        64 ~~I~If~~sG~lL~~~~w~~~~lI~mgWs~~eeLI~-v~k~g~v~Vy~~~-ge~ie~~svg~e~~~~~I~ec~~f~~GVa  141 (829)
T KOG2280|consen   64 PYIRIFNISGQLLGRILWKHGELIGMGWSDDEELIC-VQKDGTVHVYGLL-GEFIESNSVGFESQMSDIVECRFFHNGVA  141 (829)
T ss_pred             eeEEEEeccccchHHHHhcCCCeeeecccCCceEEE-EeccceEEEeecc-hhhhcccccccccccCceeEEEEecCceE
Confidence            578888876654432222334889999998776555 4789999999974 3333331    222344555666556643


Q ss_pred             EEEeeCCCcEEEEe-CCcccchhcccccccceEEeecCCcCceeEEEEEEcCc-eeEEEEEe-CCCcEEEEecCCC-cee
Q 014475          137 LISGSEDGCVRIWS-LLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGV-SATIVSAS-EDRTCKVWSLLKG-RLL  212 (424)
Q Consensus       137 l~s~~~dg~i~iwd-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~l~~~~-~d~~v~iwd~~~~-~~~  212 (424)
                      ++  ..+|++.+-+ .+... ..+        .........+-+|-...+++. ...++-.. ..+ ..++-.... ...
T Consensus       142 vl--t~~g~v~~i~~~~~~~-~~~--------~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~-~~~~q~~~~~~q~  209 (829)
T KOG2280|consen  142 VL--TVSGQVILINGVEEPK-LRK--------MPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVG-LHICQVEESRVQL  209 (829)
T ss_pred             EE--ecCCcEEEEcCCCcch-hhh--------CCCCCCccCCCcceeEecCCCcceeEEeechhhh-hcccceecccccc
Confidence            33  3455554433 32210 000        000111111111222222211 01111111 011 111111111 112


Q ss_pred             eeee-cCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCC
Q 014475          213 RNIV-FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAES  251 (424)
Q Consensus       213 ~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  251 (424)
                      ..+. ....+..+.++|+.++|+.-...|.|.+-+.+...
T Consensus       210 ~~~~~~~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~  249 (829)
T KOG2280|consen  210 HALSWPNSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQ  249 (829)
T ss_pred             cccCCCCceEEEEEEcCCcceEEEEecCCcEEEEecchhh
Confidence            2222 33678899999999999999999999999887753

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=96.19  E-value=0.6  Score=45.42  Aligned_cols=156  Identities=8%  Similarity=0.070  Sum_probs=98.8

Q ss_pred             CcEEEEeeCCCcEEEEeCCcccchhcc-----ccccc-------ceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcE
Q 014475          134 GSFLISGSEDGCVRIWSLLTVFEECES-----QRASH-------LYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTC  201 (424)
Q Consensus       134 ~~~l~s~~~dg~i~iwd~~~~~~~~~~-----~~~~~-------~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v  201 (424)
                      .+++++|. .+.|.||++.........     .....       ....... ....|+.|....-+....|+.+..||.|
T Consensus        49 ~n~LFiA~-~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p-~PHtIN~i~v~~lg~~EVLl~c~DdG~V  126 (717)
T PF08728_consen   49 RNLLFIAY-QSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWP-FPHTINFIKVGDLGGEEVLLLCTDDGDV  126 (717)
T ss_pred             CCEEEEEE-CCEEEEEecCCcccccccccccccccCccccccccccccCCC-CCceeeEEEecccCCeeEEEEEecCCeE
Confidence            55666655 568999998654331110     00000       0011111 3345777777666666899999999999


Q ss_pred             EEEecCC-------C-------------ceeeeeecCcceeEEEEC--CCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCc
Q 014475          202 KVWSLLK-------G-------------RLLRNIVFPSVIDAIALD--PAEHVFYAGSRDGSIYIAALNAESPSTSSYGM  259 (424)
Q Consensus       202 ~iwd~~~-------~-------------~~~~~~~~~~~i~~~~~~--~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~  259 (424)
                      .+|.+++       .             ++...+..+..+..++++  ...+++|++++...|.+|-.........    
T Consensus       127 ~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~r~~----  202 (717)
T PF08728_consen  127 LAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVDERFY----  202 (717)
T ss_pred             EEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEEecCCceEEEEEEeccccccc----
Confidence            9997521       0             122333456788999998  7889999999988888887765321111    


Q ss_pred             eeeeeecccCcCeEEEEecC-C---C---EEEEeCCCCcEEEEeC
Q 014475          260 HIIGSLSDHSKAVTCLAYST-G---D---LLISGSEDGMVRVWDP  297 (424)
Q Consensus       260 ~~~~~~~~~~~~i~~~~~~~-~---~---~l~t~~~dg~i~iwd~  297 (424)
                        ...-..|...|.+++|-+ .   .   .+++++-.|.+.+|++
T Consensus       203 --~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I  245 (717)
T PF08728_consen  203 --HVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI  245 (717)
T ss_pred             --cccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence              111112667888999976 1   2   7888899999999887

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>PHA02790 Kelch-like protein; Provisional

Probab=96.06  E-value=0.86  Score=43.24  Aligned_cols=131  Identities=10%  Similarity=0.017  Sum_probs=62.9

Q ss_pred             eEEEEEeCC--CcEEEEecCCCceeeeeecCcceeE-EEECCCCCEEEEEeCCC---cEEEEEcCCCCCCCCCcCceeee
Q 014475          190 ATIVSASED--RTCKVWSLLKGRLLRNIVFPSVIDA-IALDPAEHVFYAGSRDG---SIYIAALNAESPSTSSYGMHIIG  263 (424)
Q Consensus       190 ~~l~~~~~d--~~v~iwd~~~~~~~~~~~~~~~i~~-~~~~~~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~~  263 (424)
                      ...+.|+.+  ..+..||..+.+-...-..+.+... ....-+++..+.|+.++   .+..||.++..       |....
T Consensus       320 ~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~-------W~~~~  392 (480)
T PHA02790        320 KLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQ-------WQFGP  392 (480)
T ss_pred             EEEEECCcCCCCceEEEECCCCeEEECCCCCCCCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCE-------EEeCC
Confidence            677777753  3578888765543222122211111 11223677777777553   46778876653       23222


Q ss_pred             eecccCcCeEEEEecCCCEEEEeCCCCcEEEEeCCCCcEEEEEeccCCCeeEEEEEecCceeeeccCC
Q 014475          264 SLSDHSKAVTCLAYSTGDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSFS  331 (424)
Q Consensus       264 ~~~~~~~~i~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~d  331 (424)
                      .+....... +++...+.+.+.|+   .+.+||.++.+=...-.........-+..-+++..+.||.+
T Consensus       393 ~m~~~r~~~-~~~~~~~~IYv~GG---~~e~ydp~~~~W~~~~~m~~~r~~~~~~v~~~~IYviGG~~  456 (480)
T PHA02790        393 STYYPHYKS-CALVFGRRLFLVGR---NAEFYCESSNTWTLIDDPIYPRDNPELIIVDNKLLLIGGFY  456 (480)
T ss_pred             CCCCccccc-eEEEECCEEEEECC---ceEEecCCCCcEeEcCCCCCCccccEEEEECCEEEEECCcC
Confidence            222111111 22222255666664   47789887654222111111111122233467777888765

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=96.04  E-value=1.3  Score=41.51  Aligned_cols=157  Identities=13%  Similarity=0.139  Sum_probs=89.3

Q ss_pred             CCCeeEEEECCCCCEEE-Eec--CCCcEEEEEccCcceeeeeccccCCeEEEEEccC----CcEEEEeeCCCcEEEEeCC
Q 014475           80 AEPIKPIAANSHGTYIA-GGG--QSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSED----GSFLISGSEDGCVRIWSLL  152 (424)
Q Consensus        80 ~~~v~~~~~s~~~~~l~-~~~--~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~----~~~l~s~~~dg~i~iwd~~  152 (424)
                      -.++..++|. ||+.++ +.-  .+|.+++=|   ...+.    .-..|..+.|.|-    ...+++......|.+|.+.
T Consensus        19 iHPvhGlaWT-DGkqVvLT~L~l~~gE~kfGd---s~viG----qFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~   90 (671)
T PF15390_consen   19 IHPVHGLAWT-DGKQVVLTDLQLHNGEPKFGD---SKVIG----QFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLC   90 (671)
T ss_pred             hccccceEec-CCCEEEEEeeeeeCCccccCC---ccEee----ccceeeeeeecCcccCCCCceEEEeccceEEEEEec
Confidence            3588899997 455444 321  233333322   12232    3345889999983    3244555556789999985


Q ss_pred             cccchhcccccccceEEeecC---CcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCC--CceeeeeecCcceeEEEEC
Q 014475          153 TVFEECESQRASHLYLHSFTG---HTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLK--GRLLRNIVFPSVIDAIALD  227 (424)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~---~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~--~~~~~~~~~~~~i~~~~~~  227 (424)
                      -...    +..+....++..-   ..---..+.|+|..  ..|+.-.....-.+++++.  .+....+...+.|.|.||.
T Consensus        91 ~s~~----e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~--~iL~VLT~~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT  164 (671)
T PF15390_consen   91 PSTT----ERNKLLMSQTCEIREPFPVLPQGCVWHPKK--AILTVLTARDVSVLPSVHCDSSRVKADIKTSGLIHCACWT  164 (671)
T ss_pred             cCcc----ccccceeeeeeeccCCcccCCCcccccCCC--ceEEEEecCceeEeeeeeeCCceEEEeccCCceEEEEEec
Confidence            2111    1111111111111   11122456799987  6666666655555666653  3444556678899999999


Q ss_pred             CCCCEEEEEeCC-CcEEEEEcCCC
Q 014475          228 PAEHVFYAGSRD-GSIYIAALNAE  250 (424)
Q Consensus       228 ~~~~~l~~~~~d-g~i~i~d~~~~  250 (424)
                      +||+.|+++-.. =.-++||-...
T Consensus       165 ~DG~RLVVAvGSsLHSyiWd~~qK  188 (671)
T PF15390_consen  165 KDGQRLVVAVGSSLHSYIWDSAQK  188 (671)
T ss_pred             CcCCEEEEEeCCeEEEEEecCchh
Confidence            999988776433 24567776544

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=95.69  E-value=1.6  Score=39.68  Aligned_cols=193  Identities=10%  Similarity=0.101  Sum_probs=89.9

Q ss_pred             cCCCccccCCCCceeEEEEECCCCc--eee-eecCC---------CCeeEEEECCCCCEEEEecC------CCcEEEEEc
Q 014475           48 ASSQLREQPSASSGSILYWSWSKPQ--VEV-KSLPA---------EPIKPIAANSHGTYIAGGGQ------SGDIYMWEV  109 (424)
Q Consensus        48 ~~~~~l~~~~~~~g~i~vwd~~~~~--~~~-~~~~~---------~~v~~~~~s~~~~~l~~~~~------dg~v~iwd~  109 (424)
                      ...++|++.+-.++.|.|.|+.+..  ..+ +....         .....+..-|+|++++++-.      -|-+.+.|-
T Consensus        85 ~~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~  164 (461)
T PF05694_consen   85 KERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDG  164 (461)
T ss_dssp             --S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-T
T ss_pred             ccCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcC
Confidence            3567788888767999999997432  111 11110         12334445578988887522      245888888


Q ss_pred             cCcceeeeeccc---cCCeEEEEEccCCcEEEEeeC--------------------CCcEEEEeCCcccchhcccccccc
Q 014475          110 ASGRLLKKWHAH---YRAVTCLVFSEDGSFLISGSE--------------------DGCVRIWSLLTVFEECESQRASHL  166 (424)
Q Consensus       110 ~~~~~~~~~~~~---~~~i~~~~~~~~~~~l~s~~~--------------------dg~i~iwd~~~~~~~~~~~~~~~~  166 (424)
                      ++.+........   ...-..+-|.|..+.++|...                    ..++.+||+.+           .+
T Consensus       165 ~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~-----------r~  233 (461)
T PF05694_consen  165 ETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWST-----------RK  233 (461)
T ss_dssp             TT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTT-----------TE
T ss_pred             ccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCC-----------Cc
Confidence            777776666432   233456777887777877632                    35799999955           33


Q ss_pred             eEEeecCCc--CceeEEEEEEcCceeEEE-EEeCCCcEEEEec-CCCc----eeeeee------------------cCcc
Q 014475          167 YLHSFTGHT--LRITDIVIGYGGVSATIV-SASEDRTCKVWSL-LKGR----LLRNIV------------------FPSV  220 (424)
Q Consensus       167 ~~~~~~~~~--~~i~~~~~~~~~~~~~l~-~~~~d~~v~iwd~-~~~~----~~~~~~------------------~~~~  220 (424)
                      .++++.-..  .....+.|..+....+-+ .+.-..+|..|-- ..++    .+..+.                  .+.-
T Consensus       234 ~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~L  313 (461)
T PF05694_consen  234 LLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPL  313 (461)
T ss_dssp             EEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE---
T ss_pred             EeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCc
Confidence            444444322  234456666554333333 3333444544433 3322    111111                  1345


Q ss_pred             eeEEEECCCCCEEEEEe-CCCcEEEEEcCCCC
Q 014475          221 IDAIALDPAEHVFYAGS-RDGSIYIAALNAES  251 (424)
Q Consensus       221 i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~  251 (424)
                      |+.+.+|.|.++|++.+ ..|.++.||+....
T Consensus       314 itDI~iSlDDrfLYvs~W~~GdvrqYDISDP~  345 (461)
T PF05694_consen  314 ITDILISLDDRFLYVSNWLHGDVRQYDISDPF  345 (461)
T ss_dssp             ---EEE-TTS-EEEEEETTTTEEEEEE-SSTT
T ss_pred             eEeEEEccCCCEEEEEcccCCcEEEEecCCCC
Confidence            79999999999998876 68999999998864

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=95.68  E-value=0.17  Score=50.67  Aligned_cols=142  Identities=16%  Similarity=0.117  Sum_probs=91.9

Q ss_pred             CceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceee--------e----eecCcceeEEEECCC-CCEEEEEeCCCcE
Q 014475          176 LRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLR--------N----IVFPSVIDAIALDPA-EHVFYAGSRDGSI  242 (424)
Q Consensus       176 ~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~--------~----~~~~~~i~~~~~~~~-~~~l~~~~~dg~i  242 (424)
                      .+|..+...++..-..++..+.+-.|..||+++-....        .    +....-..++.|.|. ....++...|+.|
T Consensus       101 ~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl  180 (1405)
T KOG3630|consen  101 IPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSL  180 (1405)
T ss_pred             ccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccch
Confidence            45555666666532334444455578899987533221        1    112344567788884 3446677789999


Q ss_pred             EEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCCCcEEEEEecc----CCCeeEEE
Q 014475          243 YIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLA----KGPVNNIL  317 (424)
Q Consensus       243 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~----~~~v~~l~  317 (424)
                      ++..+.....        .+.. -.-....++++|+| |..++.|...|++.-|... ++....+...    ...|.+++
T Consensus       181 ~V~~~~~~~~--------~v~s-~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~-leik~~ip~Pp~~e~yrvl~v~  250 (1405)
T KOG3630|consen  181 RVKSTKQLAQ--------NVTS-FPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPS-LEIKSEIPEPPVEENYRVLSVT  250 (1405)
T ss_pred             hhhhhhhhhh--------hhcc-cCcccceeeEEeccccceeeEecCCCeEEEeecc-cceeecccCCCcCCCcceeEEE
Confidence            8887766431        1222 12446789999999 9999999999999999754 5544444422    35799999


Q ss_pred             EEecCceeee
Q 014475          318 VVRRPLYLNL  327 (424)
Q Consensus       318 ~s~~~~~l~~  327 (424)
                      |-....+|++
T Consensus       251 Wl~t~eflvv  260 (1405)
T KOG3630|consen  251 WLSTQEFLVV  260 (1405)
T ss_pred             EecceeEEEE
Confidence            9887777765

>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3

Probab=95.60  E-value=1.6  Score=39.22  Aligned_cols=208  Identities=17%  Similarity=0.213  Sum_probs=114.6

Q ss_pred             CCCCEEEEecCCCcEEEEEccCcceeeeeccccCCeEEEEEc----cCCcE--EEEeeC-C---CcEEEEeCCcccchhc
Q 014475           90 SHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFS----EDGSF--LISGSE-D---GCVRIWSLLTVFEECE  159 (424)
Q Consensus        90 ~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~----~~~~~--l~s~~~-d---g~i~iwd~~~~~~~~~  159 (424)
                      |...+++....++-+.+||+. |+.++.+.  .+.++.+..-    -+++.  |+.++. +   ..|++|.+........
T Consensus        66 p~kSlIigTdK~~GL~VYdL~-Gk~lq~~~--~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~L~  142 (381)
T PF02333_consen   66 PAKSLIIGTDKKGGLYVYDLD-GKELQSLP--VGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGELT  142 (381)
T ss_dssp             GGG-EEEEEETTTEEEEEETT-S-EEEEE---SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTEEE
T ss_pred             cccceEEEEeCCCCEEEEcCC-CcEEEeec--CCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCcce
Confidence            345677777778889999985 55566654  2344444432    13443  444443 2   3699998743111000


Q ss_pred             ccccccceEEeecCCcCceeEEEEEEc--CceeEEEEEeCCCcEEEEecC---CC----ceeeeeecCcceeEEEECCCC
Q 014475          160 SQRASHLYLHSFTGHTLRITDIVIGYG--GVSATIVSASEDRTCKVWSLL---KG----RLLRNIVFPSVIDAIALDPAE  230 (424)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~l~~~~~d~~v~iwd~~---~~----~~~~~~~~~~~i~~~~~~~~~  230 (424)
                      .......+   +......+..+|+-.+  ...-+++....+|.+..|-+.   .+    +.++.+.....+..|......
T Consensus       143 ~v~~~~~p---~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~sQ~EGCVVDDe~  219 (381)
T PF02333_consen  143 DVTDPAAP---IATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKVGSQPEGCVVDDET  219 (381)
T ss_dssp             E-CBTTC----EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE-SS-EEEEEEETTT
T ss_pred             EcCCCCcc---cccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecCCCcceEEEEeccc
Confidence            00000000   1112234667777543  222567778889988888764   22    467888888899999999999


Q ss_pred             CEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecc--cCcCeEEEEecC----CCEEEEe-CCCCcEEEEeCCC-CcE
Q 014475          231 HVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSD--HSKAVTCLAYST----GDLLISG-SEDGMVRVWDPIT-HNI  302 (424)
Q Consensus       231 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~~~~~----~~~l~t~-~~dg~i~iwd~~~-~~~  302 (424)
                      ..|+.+-.+.-|.-|+.+......    ...+....+  ....|..|+.-.    ..||+.. -.+++..+|+.+. ...
T Consensus       220 g~LYvgEE~~GIW~y~Aep~~~~~----~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~~~~~  295 (381)
T PF02333_consen  220 GRLYVGEEDVGIWRYDAEPEGGND----RTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREGPNAY  295 (381)
T ss_dssp             TEEEEEETTTEEEEEESSCCC-S------EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESSTT--E
T ss_pred             CCEEEecCccEEEEEecCCCCCCc----ceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCCCCcc
Confidence            999999999888888876543221    122322222  345677777642    2345444 4678899999764 344


Q ss_pred             EEEEe
Q 014475          303 VRMFR  307 (424)
Q Consensus       303 ~~~~~  307 (424)
                      +..|.
T Consensus       296 ~g~f~  300 (381)
T PF02333_consen  296 VGSFR  300 (381)
T ss_dssp             EEEEE
T ss_pred             cceEE
Confidence            55554

1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=95.59  E-value=0.56  Score=42.71  Aligned_cols=148  Identities=16%  Similarity=0.186  Sum_probs=79.9

Q ss_pred             CCeeEEEECCCCCEEEEec-----------CCC-cEEEEEccC--cce--eeeeccccCCeEEEEEccCCcEEEEeeCCC
Q 014475           81 EPIKPIAANSHGTYIAGGG-----------QSG-DIYMWEVAS--GRL--LKKWHAHYRAVTCLVFSEDGSFLISGSEDG  144 (424)
Q Consensus        81 ~~v~~~~~s~~~~~l~~~~-----------~dg-~v~iwd~~~--~~~--~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg  144 (424)
                      .....|+|.++|+++++-.           ..+ .|.+++-.+  |+.  ...+-........+++.+++ .++ +... 
T Consensus        14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV-~~~~-   90 (367)
T TIGR02604        14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYV-ATPP-   90 (367)
T ss_pred             CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEE-eCCC-
Confidence            4567889999999877642           223 677776543  222  23333334456889999888 444 4444 


Q ss_pred             cEEEE-eCCcccchhcccccccceEEeecC----CcCceeEEEEEEcCceeEEEEEeC-------------------CCc
Q 014475          145 CVRIW-SLLTVFEECESQRASHLYLHSFTG----HTLRITDIVIGYGGVSATIVSASE-------------------DRT  200 (424)
Q Consensus       145 ~i~iw-d~~~~~~~~~~~~~~~~~~~~~~~----~~~~i~~~~~~~~~~~~~l~~~~~-------------------d~~  200 (424)
                      .|..+ |...... ..  ......+..+..    +......++|.|++  .+.++-+.                   .|.
T Consensus        91 ~i~~~~d~~gdg~-ad--~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG--~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~  165 (367)
T TIGR02604        91 DILFLRDKDGDDK-AD--GEREVLLSGFGGQINNHHHSLNSLAWGPDG--WLYFNHGNTLASKVTRPGTSDESRQGLGGG  165 (367)
T ss_pred             eEEEEeCCCCCCC-CC--CccEEEEEccCCCCCcccccccCceECCCC--CEEEecccCCCceeccCCCccCcccccCce
Confidence            34433 4432100 00  011112222322    23457788899887  55444331                   134


Q ss_pred             EEEEecCCCceeeeee-cCcceeEEEECCCCCEEEEEe
Q 014475          201 CKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYAGS  237 (424)
Q Consensus       201 v~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~  237 (424)
                      |.-+|..+++. ..+. .-.....++|+|+|+++++-.
T Consensus       166 i~r~~pdg~~~-e~~a~G~rnp~Gl~~d~~G~l~~tdn  202 (367)
T TIGR02604       166 LFRYNPDGGKL-RVVAHGFQNPYGHSVDSWGDVFFCDN  202 (367)
T ss_pred             EEEEecCCCeE-EEEecCcCCCccceECCCCCEEEEcc
Confidence            55566554443 2232 234467899999998876644

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>PRK10115 protease 2; Provisional

Probab=95.45  E-value=3.1  Score=41.43  Aligned_cols=111  Identities=5%  Similarity=-0.057  Sum_probs=67.2

Q ss_pred             eEEecceeecCCCccccCCCC----ceeEEEEECCCCceeeeecCCCCeeEEEECCCCCEEEEecCC------CcEEEEE
Q 014475           39 LACVGQRFLASSQLREQPSAS----SGSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQS------GDIYMWE  108 (424)
Q Consensus        39 v~~~~~~~~~~~~~l~~~~~~----~g~i~vwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d------g~v~iwd  108 (424)
                      +..+.  ++|++++++.+...    ...|++-|+.++........... ..++|++|++.|+....+      ..|+.++
T Consensus       129 l~~~~--~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~-~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~  205 (686)
T PRK10115        129 LGGMA--ITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVE-PSFVWANDSWTFYYVRKHPVTLLPYQVWRHT  205 (686)
T ss_pred             EeEEE--ECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcc-eEEEEeeCCCEEEEEEecCCCCCCCEEEEEE
Confidence            44445  89999998866433    25688999987753322222222 569999999877665432      3588888


Q ss_pred             ccCc--ceeeeeccccCCeE-EEEEccCCcEEEEeeC---CCcEEEEeCC
Q 014475          109 VASG--RLLKKWHAHYRAVT-CLVFSEDGSFLISGSE---DGCVRIWSLL  152 (424)
Q Consensus       109 ~~~~--~~~~~~~~~~~~i~-~~~~~~~~~~l~s~~~---dg~i~iwd~~  152 (424)
                      +.++  +....+........ .+..+.++++++..+.   ++.+.+++..
T Consensus       206 lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~  255 (686)
T PRK10115        206 IGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAE  255 (686)
T ss_pred             CCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECc
Confidence            8877  33334443333333 2333447777665443   3568888853

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=95.44  E-value=0.3  Score=44.70  Aligned_cols=143  Identities=11%  Similarity=0.091  Sum_probs=92.1

Q ss_pred             eEEEEEeCCCcEEEEecCCCceeeeeecCcceeEEEECCCCC-------EEEEEeCCCcEEEEEcCCCCCCCCCcCceee
Q 014475          190 ATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEH-------VFYAGSRDGSIYIAALNAESPSTSSYGMHII  262 (424)
Q Consensus       190 ~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~-------~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~  262 (424)
                      -.+..++....+.--|+..|+.+........+ -+.+.|..+       .-++|-.+..|.-.|.+......      .+
T Consensus       481 li~~dg~~~~kLykmDIErGkvveeW~~~ddv-vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi------~v  553 (776)
T COG5167         481 LIYLDGGERDKLYKMDIERGKVVEEWDLKDDV-VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKI------KV  553 (776)
T ss_pred             eEEecCCCcccceeeecccceeeeEeecCCcc-eeecCCchhHHhcCccceEEeecccceEEecccccCCce------ee
Confidence            34456667778888899999999988866555 677887532       24556667777777776543110      11


Q ss_pred             eeecc--cCcCeEEEEecCCCEEEEeCCCCcEEEEeCCCCcEEEEEeccCCCeeEEEEEecCceeeeccCCCceeeccCC
Q 014475          263 GSLSD--HSKAVTCLAYSTGDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRH  340 (424)
Q Consensus       263 ~~~~~--~~~~i~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~d~~i~iw~~~  340 (424)
                      ...+.  ......+..-....++|.++..|.|++||--.-+...-+++-...|..+..+.+|.++++.+. ..+.+-+++
T Consensus       554 ~esKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk-~yllL~d~~  632 (776)
T COG5167         554 VESKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCK-NYLLLTDVP  632 (776)
T ss_pred             eeehhccccccccccccccCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeec-ceEEEEecc
Confidence            11111  112222332223789999999999999995433334445666678999999999998877654 445555554

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=95.36  E-value=2.2  Score=39.18  Aligned_cols=267  Identities=14%  Similarity=0.097  Sum_probs=142.5

Q ss_pred             CCCccccCCCCceeEEEEECCCCc-----eeeeecCCCCeeEEEECC-----CCCEEEEecCCCcEEEEEccCc--c---
Q 014475           49 SSQLREQPSASSGSILYWSWSKPQ-----VEVKSLPAEPIKPIAANS-----HGTYIAGGGQSGDIYMWEVASG--R---  113 (424)
Q Consensus        49 ~~~~l~~~~~~~g~i~vwd~~~~~-----~~~~~~~~~~v~~~~~s~-----~~~~l~~~~~dg~v~iwd~~~~--~---  113 (424)
                      ....+++|+.. |.++|++.....     .........||..+..-+     +...||+ -.-..+.||.+...  .   
T Consensus        36 ~~d~IivGS~~-G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~v~~~~g~~~~  113 (418)
T PF14727_consen   36 GSDKIIVGSYS-GILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAV-LHPRKLSVYSVSLVDGTVEH  113 (418)
T ss_pred             CccEEEEeccc-cEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEE-ecCCEEEEEEEEecCCCccc
Confidence            34567777777 999999986543     334445678998887642     3345555 45677888888321  1   


Q ss_pred             ----eeeeecccc--CCeEEEEEcc----C-CcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEE
Q 014475          114 ----LLKKWHAHY--RAVTCLVFSE----D-GSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIV  182 (424)
Q Consensus       114 ----~~~~~~~~~--~~i~~~~~~~----~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  182 (424)
                          .+..+..|.  .....++.-|    . -.++.+-+.||.+.+|+-+.           ......+.. ---...+.
T Consensus       114 g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~-----------~~f~~~lp~-~llPgPl~  181 (418)
T PF14727_consen  114 GNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQES-----------FAFSRFLPD-FLLPGPLC  181 (418)
T ss_pred             CcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCc-----------EEEEEEcCC-CCCCcCeE
Confidence                112222332  2233333333    2 35788889999999999754           111222222 22223456


Q ss_pred             EEEcCceeEEEEEeCCCcEEEEecCC--------------------Cc---eeeeeecCcceeEEEE---CCCCCEEEEE
Q 014475          183 IGYGGVSATIVSASEDRTCKVWSLLK--------------------GR---LLRNIVFPSVIDAIAL---DPAEHVFYAG  236 (424)
Q Consensus       183 ~~~~~~~~~l~~~~~d~~v~iwd~~~--------------------~~---~~~~~~~~~~i~~~~~---~~~~~~l~~~  236 (424)
                      +.+..  +.|++++.+..+..|....                    ++   +-..+.....+..+..   +.....+++-
T Consensus       182 Y~~~t--Dsfvt~sss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~nlGE~~l~i~v~~~~~~~~~IvvL  259 (418)
T PF14727_consen  182 YCPRT--DSFVTASSSWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFNLGEQALDIQVVRFSSSESDIVVL  259 (418)
T ss_pred             EeecC--CEEEEecCceeEEEecHHHhhhccccccccccccccccccccccceeEEECCceeEEEEEEEcCCCCceEEEE
Confidence            77776  6788888888888886521                    00   1122223344444443   2222223322


Q ss_pred             eCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEe----cC--CCEEEEeCCCCcEEEEeCCCCcEEEEEeccC
Q 014475          237 SRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAY----ST--GDLLISGSEDGMVRVWDPITHNIVRMFRLAK  310 (424)
Q Consensus       237 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~----~~--~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~  310 (424)
                      + ...+.+.+-...        .+....+............    .+  ...++.++.++++.||.=  .+++...+...
T Consensus       260 g-er~Lf~l~~~G~--------l~~~krLd~~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~d--~~L~WsA~l~~  328 (418)
T PF14727_consen  260 G-ERSLFCLKDNGS--------LRFQKRLDYNPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYED--TTLVWSAQLPH  328 (418)
T ss_pred             e-cceEEEEcCCCe--------EEEEEecCCceeeEEEEEeecccCCCCceEEEEEecCCeEEEEeC--CeEEEecCCCC
Confidence            2 334555544331        1222333221111111111    12  225888889999999863  33444444333


Q ss_pred             CCeeEEE---EEecCceeeeccCCCceeeccCCCCC
Q 014475          311 GPVNNIL---VVRRPLYLNLGSFSNPHTSSRRHGSQ  343 (424)
Q Consensus       311 ~~v~~l~---~s~~~~~l~~~~~d~~i~iw~~~~~~  343 (424)
                      .|| ++.   |..-.-.|++-+.+|.+.+--+.+..
T Consensus       329 ~PV-al~v~~~~~~~G~IV~Ls~~G~L~v~YLGTdP  363 (418)
T PF14727_consen  329 VPV-ALSVANFNGLKGLIVSLSDEGQLSVSYLGTDP  363 (418)
T ss_pred             CCE-EEEecccCCCCceEEEEcCCCcEEEEEeCCCC
Confidence            443 333   22334578888899999887776553

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=95.28  E-value=1.9  Score=37.80  Aligned_cols=187  Identities=13%  Similarity=0.180  Sum_probs=89.9

Q ss_pred             eeEEEECCCCCEEEEecCCCcEEEEEccCc-ce-eeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcc
Q 014475           83 IKPIAANSHGTYIAGGGQSGDIYMWEVASG-RL-LKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECES  160 (424)
Q Consensus        83 v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~-~~-~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~  160 (424)
                      ...+....++..++++ ..|.|+  ....+ +. ......-.+.+..+.-+++|+++++++.-..+.-||.-        
T Consensus       106 ~~~i~~l~~~~~~l~~-~~G~iy--~T~DgG~tW~~~~~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G--------  174 (302)
T PF14870_consen  106 PFGITALGDGSAELAG-DRGAIY--RTTDGGKTWQAVVSETSGSINDITRSSDGRYVAVSSRGNFYSSWDPG--------  174 (302)
T ss_dssp             EEEEEEEETTEEEEEE-TT--EE--EESSTTSSEEEEE-S----EEEEEE-TTS-EEEEETTSSEEEEE-TT--------
T ss_pred             eeEEEEcCCCcEEEEc-CCCcEE--EeCCCCCCeeEcccCCcceeEeEEECCCCcEEEEECcccEEEEecCC--------
Confidence            3344443444444443 445443  33333 22 22233445778889999999988887665555678762        


Q ss_pred             cccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEe-cCCCceeee----ee-cCcceeEEEECCCCCEEE
Q 014475          161 QRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWS-LLKGRLLRN----IV-FPSVIDAIALDPAEHVFY  234 (424)
Q Consensus       161 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd-~~~~~~~~~----~~-~~~~i~~~~~~~~~~~l~  234 (424)
                         ..............|..|.|.+++  ...+ ....|.|+.=+ ....+.-..    +. ..-.+..+++.+++...+
T Consensus       175 ---~~~w~~~~r~~~~riq~~gf~~~~--~lw~-~~~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa  248 (302)
T PF14870_consen  175 ---QTTWQPHNRNSSRRIQSMGFSPDG--NLWM-LARGGQIQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPPNEIWA  248 (302)
T ss_dssp             ----SS-EEEE--SSS-EEEEEE-TTS---EEE-EETTTEEEEEE-TTEEEEE---B-TTSS--S-EEEEEESSSS-EEE
T ss_pred             ---CccceEEccCccceehhceecCCC--CEEE-EeCCcEEEEccCCCCccccccccCCcccCceeeEEEEecCCCCEEE
Confidence               222233334456789999999986  4434 44888888877 222222111    11 233478999999888777


Q ss_pred             EEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEE
Q 014475          235 AGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVW  295 (424)
Q Consensus       235 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iw  295 (424)
                      +|+. |.+ +...+.++.      ++.......-...+..+.|.+ .+-++. +.+|.|.-|
T Consensus       249 ~gg~-G~l-~~S~DgGkt------W~~~~~~~~~~~n~~~i~f~~~~~gf~l-G~~G~ll~~  301 (302)
T PF14870_consen  249 VGGS-GTL-LVSTDGGKT------WQKDRVGENVPSNLYRIVFVNPDKGFVL-GQDGVLLRY  301 (302)
T ss_dssp             EEST-T-E-EEESSTTSS-------EE-GGGTTSSS---EEEEEETTEEEEE--STTEEEEE
T ss_pred             EeCC-ccE-EEeCCCCcc------ceECccccCCCCceEEEEEcCCCceEEE-CCCcEEEEe
Confidence            6654 433 444444431      233323333455678888876 444444 467876544

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.27  E-value=3.1  Score=40.34  Aligned_cols=219  Identities=16%  Similarity=0.167  Sum_probs=107.9

Q ss_pred             CCCCeeEEEECCCCCEEEEecCCCcEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchh
Q 014475           79 PAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEEC  158 (424)
Q Consensus        79 ~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~  158 (424)
                      +-+.+.++..+|....=+. +.--.|+||+. +|..+..+.-..+.+-.+.|+.+. .|++...+|++++|++.......
T Consensus        42 p~gGpIAV~r~p~~~~~~~-~a~~~I~If~~-sG~lL~~~~w~~~~lI~mgWs~~e-eLI~v~k~g~v~Vy~~~ge~ie~  118 (829)
T KOG2280|consen   42 PFGGPIAVTRSPSKLVPLY-SARPYIRIFNI-SGQLLGRILWKHGELIGMGWSDDE-ELICVQKDGTVHVYGLLGEFIES  118 (829)
T ss_pred             ccCCceEEEeccccccccc-ccceeEEEEec-cccchHHHHhcCCCeeeecccCCc-eEEEEeccceEEEeecchhhhcc
Confidence            3444455555552211111 23346899985 677776665555588999999655 57777899999999985421110


Q ss_pred             cccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeeec-C-cce--eEEEECCCCC---
Q 014475          159 ESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVF-P-SVI--DAIALDPAEH---  231 (424)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~-~-~~i--~~~~~~~~~~---  231 (424)
                      .        -.........|..+.+..+|    ++.-..+|.+.+-+-.....+..+.. + ...  .|-...+++.   
T Consensus       119 ~--------svg~e~~~~~I~ec~~f~~G----Vavlt~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~  186 (829)
T KOG2280|consen  119 N--------SVGFESQMSDIVECRFFHNG----VAVLTVSGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQST  186 (829)
T ss_pred             c--------ccccccccCceeEEEEecCc----eEEEecCCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcce
Confidence            0        00112223344444444444    33334445554433222212222221 1 111  2222222211   


Q ss_pred             EEEEEe-CCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCCCcEEEEEecc
Q 014475          232 VFYAGS-RDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLA  309 (424)
Q Consensus       232 ~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~  309 (424)
                      .++--. ..+ ..++-.....        .....+......+..+..+| .++|+--...|.|.+-+....++...+...
T Consensus       187 ~ll~v~~~v~-~~~~q~~~~~--------~q~~~~~~~~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~~~  257 (829)
T KOG2280|consen  187 ILLDVDVAVG-LHICQVEESR--------VQLHALSWPNSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFNCT  257 (829)
T ss_pred             eEEeechhhh-hcccceeccc--------ccccccCCCCceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccCCC
Confidence            111111 011 1111111111        01111222235677888998 889999999999999998887777776621


Q ss_pred             C-CCeeEEEEEec
Q 014475          310 K-GPVNNILVVRR  321 (424)
Q Consensus       310 ~-~~v~~l~~s~~  321 (424)
                      . .+-..++|.-+
T Consensus       258 ~~~~p~qm~Wcgn  270 (829)
T KOG2280|consen  258 DHDPPKQMAWCGN  270 (829)
T ss_pred             CCCchHhceeecC
Confidence            1 12225555543

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=95.15  E-value=1.8  Score=36.99  Aligned_cols=150  Identities=16%  Similarity=0.069  Sum_probs=84.7

Q ss_pred             CeEEEEEccCCcEEEEee---CCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCc
Q 014475          124 AVTCLVFSEDGSFLISGS---EDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRT  200 (424)
Q Consensus       124 ~i~~~~~~~~~~~l~s~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~  200 (424)
                      .+.+.+++++++.++...   ....+.++.....          .  .....  ...+..-.|++++  ...+....+..
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~----------~--~~~~~--g~~l~~PS~d~~g--~~W~v~~~~~~   88 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGP----------V--RPVLT--GGSLTRPSWDPDG--WVWTVDDGSGG   88 (253)
T ss_pred             cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCc----------c--eeecc--CCccccccccCCC--CEEEEEcCCCc
Confidence            688999999999877655   2334555554321          1  11112  2255666787775  45555555555


Q ss_pred             EEEEe-cCCCcee-eeee---cCcceeEEEECCCCCEEEEEe---CCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCe
Q 014475          201 CKVWS-LLKGRLL-RNIV---FPSVIDAIALDPAEHVFYAGS---RDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAV  272 (424)
Q Consensus       201 v~iwd-~~~~~~~-~~~~---~~~~i~~~~~~~~~~~l~~~~---~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i  272 (424)
                      .+++. ..+++.. ....   ....|..+.++|||..++...   .++.|.+--+........................+
T Consensus        89 ~~~~~~~~~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v  168 (253)
T PF10647_consen   89 VRVVRDSASGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDV  168 (253)
T ss_pred             eEEEEecCCCcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcc
Confidence            66663 2333222 1222   112899999999999888765   35678777664432221111112222222345689


Q ss_pred             EEEEecC-CCEEEEeCCC
Q 014475          273 TCLAYST-GDLLISGSED  289 (424)
Q Consensus       273 ~~~~~~~-~~~l~t~~~d  289 (424)
                      +.+.|.+ +.+++.+...
T Consensus       169 ~~v~W~~~~~L~V~~~~~  186 (253)
T PF10647_consen  169 TDVAWSDDSTLVVLGRSA  186 (253)
T ss_pred             eeeeecCCCEEEEEeCCC
Confidence            9999999 6665555543

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=95.14  E-value=0.95  Score=33.68  Aligned_cols=115  Identities=11%  Similarity=0.161  Sum_probs=68.6

Q ss_pred             eEEEECCCCCEEEEecCCCcEEEEEccCcc--------eeeeeccccCCeEEEEEcc-----CCcEEEEeeCCCcEEEEe
Q 014475           84 KPIAANSHGTYIAGGGQSGDIYMWEVASGR--------LLKKWHAHYRAVTCLVFSE-----DGSFLISGSEDGCVRIWS  150 (424)
Q Consensus        84 ~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~--------~~~~~~~~~~~i~~~~~~~-----~~~~l~s~~~dg~i~iwd  150 (424)
                      ..-+|......|++++.-|+|.|++.....        .+..+. -...|++++-.+     +...|+.|+.. .+..||
T Consensus         2 aiGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN-in~~italaaG~l~~~~~~D~LliGt~t-~llaYD   79 (136)
T PF14781_consen    2 AIGKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLN-INQEITALAAGRLKPDDGRDCLLIGTQT-SLLAYD   79 (136)
T ss_pred             eEEEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEE-CCCceEEEEEEecCCCCCcCEEEEeccc-eEEEEE
Confidence            344676677789999999999999886432        333343 456677776543     34567777665 799999


Q ss_pred             CCcccchhcccccccceEEeecCCcCceeEEEEEEcCc-eeEEEEEeCCCcEEEEecCCCcee
Q 014475          151 LLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGV-SATIVSASEDRTCKVWSLLKGRLL  212 (424)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~l~~~~~d~~v~iwd~~~~~~~  212 (424)
                      +.+..         ...   ++.-...++++.+..-+. ..-++..+.+..|.-||....+..
T Consensus        80 V~~N~---------d~F---yke~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~f  130 (136)
T PF14781_consen   80 VENNS---------DLF---YKEVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEIF  130 (136)
T ss_pred             cccCc---------hhh---hhhCccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEEE
Confidence            97632         222   122345666666643221 133444444566777776544443

>PRK14131 N-acetylneuraminic acid mutarotase; Provisional

Probab=95.13  E-value=2.6  Score=38.60  Aligned_cols=96  Identities=16%  Similarity=0.178  Sum_probs=44.7

Q ss_pred             cCCCccccCCCCceeEEEEECCCCceeeeec---CC-CCeeEEEECCCCCEEEEecCC-----------CcEEEEEccCc
Q 014475           48 ASSQLREQPSASSGSILYWSWSKPQVEVKSL---PA-EPIKPIAANSHGTYIAGGGQS-----------GDIYMWEVASG  112 (424)
Q Consensus        48 ~~~~~l~~~~~~~g~i~vwd~~~~~~~~~~~---~~-~~v~~~~~s~~~~~l~~~~~d-----------g~v~iwd~~~~  112 (424)
                      .+++..+.+|..+..+.++|++.....+...   +. .........-++.+.+.|+..           ..+..||..+.
T Consensus        37 ~~~~iyv~gG~~~~~~~~~d~~~~~~~W~~l~~~p~~~r~~~~~v~~~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n  116 (376)
T PRK14131         37 DNNTVYVGLGSAGTSWYKLDLNAPSKGWTKIAAFPGGPREQAVAAFIDGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTN  116 (376)
T ss_pred             ECCEEEEEeCCCCCeEEEEECCCCCCCeEECCcCCCCCcccceEEEECCEEEEEcCCCCCCCCCceeEcccEEEEeCCCC
Confidence            3556556555544667788876422112211   11 111111222356677777653           24778888765


Q ss_pred             ceeeeeccccCCe--EEEEEccCCcEEEEeeCC
Q 014475          113 RLLKKWHAHYRAV--TCLVFSEDGSFLISGSED  143 (424)
Q Consensus       113 ~~~~~~~~~~~~i--~~~~~~~~~~~l~s~~~d  143 (424)
                      +-...-.......  .+....-+++..+.|+.+
T Consensus       117 ~W~~~~~~~p~~~~~~~~~~~~~~~IYv~GG~~  149 (376)
T PRK14131        117 SWQKLDTRSPVGLAGHVAVSLHNGKAYITGGVN  149 (376)
T ss_pred             EEEeCCCCCCCcccceEEEEeeCCEEEEECCCC
Confidence            4322111001111  112221367777887754

>PRK13684 Ycf48-like protein; Provisional

Probab=94.94  E-value=2.7  Score=37.75  Aligned_cols=151  Identities=9%  Similarity=0.077  Sum_probs=80.3

Q ss_pred             cCCeEEEEEccCCcEEEEeeCCCcEEE-EeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCc
Q 014475          122 YRAVTCLVFSEDGSFLISGSEDGCVRI-WSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRT  200 (424)
Q Consensus       122 ~~~i~~~~~~~~~~~l~s~~~dg~i~i-wd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~  200 (424)
                      ...+..+.+.|++.+++++ ..|.+.. ++-           ...........-...++++.+.+++  ..+++ +..|.
T Consensus       172 ~g~~~~i~~~~~g~~v~~g-~~G~i~~s~~~-----------gg~tW~~~~~~~~~~l~~i~~~~~g--~~~~v-g~~G~  236 (334)
T PRK13684        172 AGVVRNLRRSPDGKYVAVS-SRGNFYSTWEP-----------GQTAWTPHQRNSSRRLQSMGFQPDG--NLWML-ARGGQ  236 (334)
T ss_pred             cceEEEEEECCCCeEEEEe-CCceEEEEcCC-----------CCCeEEEeeCCCcccceeeeEcCCC--CEEEE-ecCCE
Confidence            4568899999988666555 4565543 221           1111112222345678888888876  55444 45676


Q ss_pred             EEEEecCCCceeeeeec-----CcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEE
Q 014475          201 CKVWSLLKGRLLRNIVF-----PSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCL  275 (424)
Q Consensus       201 v~iwd~~~~~~~~~~~~-----~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  275 (424)
                      +++=..+.+..-.....     ...+..+.+.|++..++++ .+|.+. ...+.+..      ++.+.....-......+
T Consensus       237 ~~~~s~d~G~sW~~~~~~~~~~~~~l~~v~~~~~~~~~~~G-~~G~v~-~S~d~G~t------W~~~~~~~~~~~~~~~~  308 (334)
T PRK13684        237 IRFNDPDDLESWSKPIIPEITNGYGYLDLAYRTPGEIWAGG-GNGTLL-VSKDGGKT------WEKDPVGEEVPSNFYKI  308 (334)
T ss_pred             EEEccCCCCCccccccCCccccccceeeEEEcCCCCEEEEc-CCCeEE-EeCCCCCC------CeECCcCCCCCcceEEE
Confidence            65333344443222221     2347788899887755544 566554 33443321      12211111222356777


Q ss_pred             EecC-CCEEEEeCCCCcEEEEe
Q 014475          276 AYST-GDLLISGSEDGMVRVWD  296 (424)
Q Consensus       276 ~~~~-~~~l~t~~~dg~i~iwd  296 (424)
                      .+.. +..++ .+..|.|.-|+
T Consensus       309 ~~~~~~~~~~-~G~~G~il~~~  329 (334)
T PRK13684        309 VFLDPEKGFV-LGQRGVLLRYV  329 (334)
T ss_pred             EEeCCCceEE-ECCCceEEEec
Confidence            7766 55544 55678887776

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=94.83  E-value=4.9  Score=40.34  Aligned_cols=114  Identities=15%  Similarity=0.254  Sum_probs=69.0

Q ss_pred             EEeecCCCCCceEEEeCCCCceEEEeeCCCCCCC---ceEEecceee----------------cCCCccccCCCCceeEE
Q 014475            4 LIASSSVADTGIGCWDLESGAEQLRYKSCASPPH---GLACVGQRFL----------------ASSQLREQPSASSGSIL   64 (424)
Q Consensus         4 ~lat~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~---~v~~~~~~~~----------------~~~~~l~~~~~~~g~i~   64 (424)
                      .|..++ .++.|.-.|.++|+.+-++........   ...|-...+.                ..+..++.++.| +.+.
T Consensus       196 ~lYv~t-~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~D-g~Li  273 (764)
T TIGR03074       196 TLYLCT-PHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSD-ARLI  273 (764)
T ss_pred             EEEEEC-CCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCC-CeEE
Confidence            456666 788999999999999877754332111   0011000021                123356666666 8999


Q ss_pred             EEECCCCceeeeecCCCCee-------------EEEECC--CCCEEEEecC----------CCcEEEEEccCcceeeeec
Q 014475           65 YWSWSKPQVEVKSLPAEPIK-------------PIAANS--HGTYIAGGGQ----------SGDIYMWEVASGRLLKKWH  119 (424)
Q Consensus        65 vwd~~~~~~~~~~~~~~~v~-------------~~~~s~--~~~~l~~~~~----------dg~v~iwd~~~~~~~~~~~  119 (424)
                      -.|.++++........+.|.             .+.-.|  .+..+++|+.          +|.|+-+|.++|+.+-.+.
T Consensus       274 ALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~~  353 (764)
T TIGR03074       274 ALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAWD  353 (764)
T ss_pred             EEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEEe
Confidence            99999888876554333221             111222  2345555532          6889999999999887664

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.82  E-value=3  Score=37.92  Aligned_cols=125  Identities=6%  Similarity=0.073  Sum_probs=79.8

Q ss_pred             CCCcEEEEecCCCc--eeeee--ecCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCe
Q 014475          197 EDRTCKVWSLLKGR--LLRNI--VFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAV  272 (424)
Q Consensus       197 ~d~~v~iwd~~~~~--~~~~~--~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i  272 (424)
                      ..|.+.-|-.....  ....+  ...++|.++.|++|.+.+++--.+..|.+++........     ....+.+.....|
T Consensus        41 rSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l-----~~~~~ck~k~~~I  115 (657)
T KOG2377|consen   41 RSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQL-----EYTQECKTKNANI  115 (657)
T ss_pred             ecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhh-----HHHHHhccCccee
Confidence            34455556544222  22222  256799999999999999999999999999985543110     1122233344568


Q ss_pred             EEEEecCCCEEEEeCCCCcEEEEeCCC-CcEEEEEeccCCCeeEEEEEecCceeee
Q 014475          273 TCLAYSTGDLLISGSEDGMVRVWDPIT-HNIVRMFRLAKGPVNNILVVRRPLYLNL  327 (424)
Q Consensus       273 ~~~~~~~~~~l~t~~~dg~i~iwd~~~-~~~~~~~~~~~~~v~~l~~s~~~~~l~~  327 (424)
                      ....|+...-+|.-...| +-+|-... .+.++..+.|...|.--.|.++.+.++-
T Consensus       116 lGF~W~~s~e~A~i~~~G-~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL  170 (657)
T KOG2377|consen  116 LGFCWTSSTEIAFITDQG-IEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILL  170 (657)
T ss_pred             EEEEEecCeeEEEEecCC-eEEEEEchhhhhhhhhhhcccCccEEEEccccceEee
Confidence            888898755566555444 66665543 3345556667778888888888776543

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=94.81  E-value=0.72  Score=44.88  Aligned_cols=103  Identities=12%  Similarity=0.091  Sum_probs=68.9

Q ss_pred             cCCCccccCCCCceeEEEEECCC-------C----c---------eeeeecCCCCeeEEEEC--CCCCEEEEecCCCcEE
Q 014475           48 ASSQLREQPSASSGSILYWSWSK-------P----Q---------VEVKSLPAEPIKPIAAN--SHGTYIAGGGQSGDIY  105 (424)
Q Consensus        48 ~~~~~l~~~~~~~g~i~vwd~~~-------~----~---------~~~~~~~~~~v~~~~~s--~~~~~l~~~~~dg~v~  105 (424)
                      -....|+.+..+ |.|.+|..+.       .    .         +.+.......++.++++  ...++||+++....|.
T Consensus       112 g~~EVLl~c~Dd-G~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~~VT  190 (717)
T PF08728_consen  112 GGEEVLLLCTDD-GDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQEVT  190 (717)
T ss_pred             CCeeEEEEEecC-CeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEEecCCceEE
Confidence            344555555555 9999997631       0    0         11222245688999998  8888999998888888


Q ss_pred             EEEccCcceeee---eccccCCeEEEEEccCC---c---EEEEeeCCCcEEEEeC
Q 014475          106 MWEVASGRLLKK---WHAHYRAVTCLVFSEDG---S---FLISGSEDGCVRIWSL  151 (424)
Q Consensus       106 iwd~~~~~~~~~---~~~~~~~i~~~~~~~~~---~---~l~s~~~dg~i~iwd~  151 (424)
                      ||-.........   -..|...|-+|+|.++.   .   .+++++-.|.+.+|++
T Consensus       191 VFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I  245 (717)
T PF08728_consen  191 VFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI  245 (717)
T ss_pred             EEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence            887654211111   11366779999997633   2   6788889999999887

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=94.80  E-value=0.17  Score=29.12  Aligned_cols=32  Identities=9%  Similarity=0.133  Sum_probs=26.3

Q ss_pred             CCeeEEEECCCC---CEEEEecCCCcEEEEEccCc
Q 014475           81 EPIKPIAANSHG---TYIAGGGQSGDIYMWEVASG  112 (424)
Q Consensus        81 ~~v~~~~~s~~~---~~l~~~~~dg~v~iwd~~~~  112 (424)
                      +.|.++.|||+.   .+|+.+-..|.|.|+|++++
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~   35 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN   35 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence            468999999854   58888888899999999853

It contains a characteristic DLL sequence motif.

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=94.76  E-value=2.6  Score=36.88  Aligned_cols=226  Identities=12%  Similarity=0.076  Sum_probs=101.2

Q ss_pred             cCCCCeeEEEECCCCCEEEEecCCCcEEEEEccCc-ceeeee--ccc---cCCeEEEEEccCCcEEEEeeCCCcEEEEeC
Q 014475           78 LPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASG-RLLKKW--HAH---YRAVTCLVFSEDGSFLISGSEDGCVRIWSL  151 (424)
Q Consensus        78 ~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~-~~~~~~--~~~---~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~  151 (424)
                      ....++..|.|..+..-+++|. .+.|  +....+ +.=...  ...   .-...++.|.. ...+++| ..|. .+...
T Consensus        14 ~t~~~l~dV~F~d~~~G~~VG~-~g~i--l~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~-~~g~ivG-~~g~-ll~T~   87 (302)
T PF14870_consen   14 PTDKPLLDVAFVDPNHGWAVGA-YGTI--LKTTDGGKTWQPVSLDLDNPFDYHLNSISFDG-NEGWIVG-EPGL-LLHTT   87 (302)
T ss_dssp             S-SS-EEEEEESSSS-EEEEET-TTEE--EEESSTTSS-EE-----S-----EEEEEEEET-TEEEEEE-ETTE-EEEES
T ss_pred             CCCCceEEEEEecCCEEEEEec-CCEE--EEECCCCccccccccCCCccceeeEEEEEecC-CceEEEc-CCce-EEEec
Confidence            3466899999996666667665 4543  333333 211111  111   12356777764 3444544 4453 33333


Q ss_pred             CcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeee--cCcceeEEEECCC
Q 014475          152 LTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV--FPSVIDAIALDPA  229 (424)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~--~~~~i~~~~~~~~  229 (424)
                      +.+        .....+..-..-......+....++  ...+. +..|.|.. ..+.++.=..+.  ....+..+..+++
T Consensus        88 DgG--------~tW~~v~l~~~lpgs~~~i~~l~~~--~~~l~-~~~G~iy~-T~DgG~tW~~~~~~~~gs~~~~~r~~d  155 (302)
T PF14870_consen   88 DGG--------KTWERVPLSSKLPGSPFGITALGDG--SAELA-GDRGAIYR-TTDGGKTWQAVVSETSGSINDITRSSD  155 (302)
T ss_dssp             STT--------SS-EE----TT-SS-EEEEEEEETT--EEEEE-ETT--EEE-ESSTTSSEEEEE-S----EEEEEE-TT
T ss_pred             CCC--------CCcEEeecCCCCCCCeeEEEEcCCC--cEEEE-cCCCcEEE-eCCCCCCeeEcccCCcceeEeEEECCC
Confidence            221        1111111111112223334444443  33333 33443322 222333222222  4567888889999


Q ss_pred             CCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEe-CCCCcEEEE--
Q 014475          230 EHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWD-PITHNIVRM--  305 (424)
Q Consensus       230 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd-~~~~~~~~~--  305 (424)
                      |++++++.......-||-....       +.+.  .+.-...|..|.|.| +.+.+.+ ..|.|++=+ ....+....  
T Consensus       156 G~~vavs~~G~~~~s~~~G~~~-------w~~~--~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~~w~~~~  225 (302)
T PF14870_consen  156 GRYVAVSSRGNFYSSWDPGQTT-------WQPH--NRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGETWSEPI  225 (302)
T ss_dssp             S-EEEEETTSSEEEEE-TT-SS--------EEE--E--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEEEE---B
T ss_pred             CcEEEEECcccEEEEecCCCcc-------ceEE--ccCccceehhceecCCCCEEEEe-CCcEEEEccCCCCcccccccc
Confidence            9999888766556677765432       2222  222457899999999 5554544 888888877 222222222  


Q ss_pred             Ee--ccCCCeeEEEEEecCceeeeccCC
Q 014475          306 FR--LAKGPVNNILVVRRPLYLNLGSFS  331 (424)
Q Consensus       306 ~~--~~~~~v~~l~~s~~~~~l~~~~~d  331 (424)
                      ..  ...-.+..++|.+++...++|+..
T Consensus       226 ~~~~~~~~~~ld~a~~~~~~~wa~gg~G  253 (302)
T PF14870_consen  226 IPIKTNGYGILDLAYRPPNEIWAVGGSG  253 (302)
T ss_dssp             -TTSS--S-EEEEEESSSS-EEEEESTT
T ss_pred             CCcccCceeeEEEEecCCCCEEEEeCCc
Confidence            11  111247889999988777776544

>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family

Probab=94.62  E-value=3.3  Score=37.39  Aligned_cols=95  Identities=15%  Similarity=0.165  Sum_probs=44.2

Q ss_pred             CCCccccCCCCceeEEEEECCCCceeeeec---C-CCCeeEEEECCCCCEEEEecCC-----------CcEEEEEccCcc
Q 014475           49 SSQLREQPSASSGSILYWSWSKPQVEVKSL---P-AEPIKPIAANSHGTYIAGGGQS-----------GDIYMWEVASGR  113 (424)
Q Consensus        49 ~~~~l~~~~~~~g~i~vwd~~~~~~~~~~~---~-~~~v~~~~~s~~~~~l~~~~~d-----------g~v~iwd~~~~~  113 (424)
                      +++..++++.....+..+|++.....+...   + ..........-++++.+.|+.+           ..+..||+.+.+
T Consensus        17 ~~~vyv~GG~~~~~~~~~d~~~~~~~W~~l~~~p~~~R~~~~~~~~~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~~   96 (346)
T TIGR03547        17 GDKVYVGLGSAGTSWYKLDLKKPSKGWQKIADFPGGPRNQAVAAAIDGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNS   96 (346)
T ss_pred             CCEEEEEccccCCeeEEEECCCCCCCceECCCCCCCCcccceEEEECCEEEEEeCCCCCCCCCcceecccEEEEECCCCE
Confidence            455555566543567777764322222211   1 1111111222357777777753           247788887654


Q ss_pred             eeeeeccccCCeE--EEEEccCCcEEEEeeCC
Q 014475          114 LLKKWHAHYRAVT--CLVFSEDGSFLISGSED  143 (424)
Q Consensus       114 ~~~~~~~~~~~i~--~~~~~~~~~~l~s~~~d  143 (424)
                      -...-........  +....-+++..+.|+.+
T Consensus        97 W~~~~~~~p~~~~~~~~~~~~~g~IYviGG~~  128 (346)
T TIGR03547        97 WQKLDTRSPVGLLGASGFSLHNGQAYFTGGVN  128 (346)
T ss_pred             EecCCCCCCCcccceeEEEEeCCEEEEEcCcC
Confidence            3222111111111  11112367788888764

Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.

>COG5276 Uncharacterized conserved protein [Function unknown]

Probab=94.61  E-value=2.6  Score=36.07  Aligned_cols=261  Identities=10%  Similarity=0.050  Sum_probs=133.6

Q ss_pred             eEEEeecCCCCCceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCceeeee----
Q 014475            2 ELLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKS----   77 (424)
Q Consensus         2 e~~lat~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~~----   77 (424)
                      |.+...+. .+.-++|.|+.+......+.... -..-..+    +.-.|++..++..+ .-+.+.|+.++......    
T Consensus        96 e~yvyvad-~ssGL~IvDIS~P~sP~~~~~ln-t~gyayg----v~vsGn~aYVadld-dgfLivdvsdpssP~lagrya  168 (370)
T COG5276          96 EEYVYVAD-WSSGLRIVDISTPDSPTLIGFLN-TDGYAYG----VYVSGNYAYVADLD-DGFLIVDVSDPSSPQLAGRYA  168 (370)
T ss_pred             ccEEEEEc-CCCceEEEeccCCCCcceecccc-CCceEEE----EEecCCEEEEeecc-CcEEEEECCCCCCceeeeeec
Confidence            45566666 67789999988765543332111 1111222    55678888777766 55667788766543322    


Q ss_pred             cCCCCeeEEEECCCCCEEEEecCCCcEEEEEccCcce---eeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcc
Q 014475           78 LPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRL---LKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTV  154 (424)
Q Consensus        78 ~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~---~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~  154 (424)
                      .....-..++.|  |++-..+..|+-+.+-|+.....   +.... ....+.++..+++-.+++...  --+.+-|..+.
T Consensus       169 ~~~~d~~~v~IS--Gn~AYvA~~d~GL~ivDVSnp~sPvli~~~n-~g~g~~sv~vsdnr~y~vvy~--egvlivd~s~~  243 (370)
T COG5276         169 LPGGDTHDVAIS--GNYAYVAWRDGGLTIVDVSNPHSPVLIGSYN-TGPGTYSVSVSDNRAYLVVYD--EGVLIVDVSGP  243 (370)
T ss_pred             cCCCCceeEEEe--cCeEEEEEeCCCeEEEEccCCCCCeEEEEEe-cCCceEEEEecCCeeEEEEcc--cceEEEecCCC
Confidence            123344566665  66777777888999999865532   22221 223678888887665555543  34667777552


Q ss_pred             cchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeee---eecCc-ceeEEEECCCC
Q 014475          155 FEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRN---IVFPS-VIDAIALDPAE  230 (424)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~---~~~~~-~i~~~~~~~~~  230 (424)
                               +...+.-....+.++..-.+.-.+  ++......+..+.+-|+.+......   +...+ ....+..  .+
T Consensus       244 ---------ssp~~~gsyet~~p~~~s~v~Vs~--~~~Yvadga~gl~~idisnp~spfl~ss~~t~g~~a~gi~a--y~  310 (370)
T COG5276         244 ---------SSPTVFGSYETSNPVSISTVPVSG--EYAYVADGAKGLPIIDISNPPSPFLSSSLDTAGYQAAGIRA--YG  310 (370)
T ss_pred             ---------CCceEeeccccCCcccccceeccc--ceeeeeccccCceeEeccCCCCCchhccccCCCccccceEE--ec
Confidence                     211222111122222111222233  5666666677777777765432211   11111 2222222  34


Q ss_pred             CEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeC
Q 014475          231 HVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDP  297 (424)
Q Consensus       231 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~  297 (424)
                      .++..+..+ ...+.+....+...         ...+....+.+.+.+- .+.+.+...++-+.||+.
T Consensus       311 ~y~yiadkn-~g~vV~~s~~s~m~---------~~~g~~ti~~s~~v~~~~q~~y~~d~~~gl~i~~~  368 (370)
T COG5276         311 NYNYIADKN-TGAVVDASPPSMMD---------KRPGRPTIGQSCDVSVDTQIIYSTDYNGGLSIIEY  368 (370)
T ss_pred             CeeEeccCC-ceEEEeCCChhhcc---------cccCcceEeeecceEEEeeEEEEeecCCCEEEEEe
Confidence            444444443 44455554432111         1111111122222222 447777788888888874

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=94.61  E-value=0.82  Score=41.97  Aligned_cols=140  Identities=11%  Similarity=0.098  Sum_probs=86.0

Q ss_pred             EEEeecCCCCCceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCcc-------ccCCCCceeEEEEECCC-Ccee
Q 014475            3 LLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLR-------EQPSASSGSILYWSWSK-PQVE   74 (424)
Q Consensus         3 ~~lat~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l-------~~~~~~~g~i~vwd~~~-~~~~   74 (424)
                      +++..|. ....+.--|++.|+.+.++..+..    + .+.  |.|+.+.-       ++|-++ ..|.-.|.+- +...
T Consensus       481 li~~dg~-~~~kLykmDIErGkvveeW~~~dd----v-vVq--y~p~~kf~qmt~eqtlvGlS~-~svFrIDPR~~gNKi  551 (776)
T COG5167         481 LIYLDGG-ERDKLYKMDIERGKVVEEWDLKDD----V-VVQ--YNPYFKFQQMTDEQTLVGLSD-YSVFRIDPRARGNKI  551 (776)
T ss_pred             eEEecCC-CcccceeeecccceeeeEeecCCc----c-eee--cCCchhHHhcCccceEEeecc-cceEEecccccCCce
Confidence            4555666 667788888999999999886643    2 233  65653321       122222 3333334331 1111


Q ss_pred             eeecCCCCeeEEEECC----CCCEEEEecCCCcEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEe
Q 014475           75 VKSLPAEPIKPIAANS----HGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWS  150 (424)
Q Consensus        75 ~~~~~~~~v~~~~~s~----~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd  150 (424)
                      ......+-++.-.||.    ...++|+|+..|.|++||--.-+....+++-...|..+..+.+|+++++.+.. .+.+-|
T Consensus       552 ~v~esKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk~-yllL~d  630 (776)
T COG5167         552 KVVESKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCKN-YLLLTD  630 (776)
T ss_pred             eeeeehhccccccccccccccCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeecc-eEEEEe
Confidence            1111122222222332    35589999999999999965444455667788899999999999998877664 788888


Q ss_pred             CC
Q 014475          151 LL  152 (424)
Q Consensus       151 ~~  152 (424)
                      +.
T Consensus       631 ~~  632 (776)
T COG5167         631 VP  632 (776)
T ss_pred             cc
Confidence            74

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=94.56  E-value=0.082  Score=51.45  Aligned_cols=137  Identities=14%  Similarity=0.237  Sum_probs=82.2

Q ss_pred             CceEEEeCC--CCceEEEe-----eCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCceeeeecCCCCeeE
Q 014475           13 TGIGCWDLE--SGAEQLRY-----KSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSLPAEPIKP   85 (424)
Q Consensus        13 g~i~vwd~~--~~~~~~~~-----~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~~~~~~~v~~   85 (424)
                      |.+.|||+.  .|+....+     ..-...+..|....  |.++..++..+-++ ++|++.+++.....+...|...+..
T Consensus       153 g~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp--~~~~~~~ic~~~~~-~~i~lL~~~ra~~~l~rsHs~~~~d  229 (1283)
T KOG1916|consen  153 GELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCP--IAVNKVYICYGLKG-GEIRLLNINRALRSLFRSHSQRVTD  229 (1283)
T ss_pred             hhhheeehHhhccccccceEEeecCcCCCCcceeeecc--cccccceeeeccCC-CceeEeeechHHHHHHHhcCCCccc
Confidence            567788865  34433222     22233445566666  77777666555555 9999988876554433336554444


Q ss_pred             EE-----------ECCCCCEEEEecCCCcEEEEEcc-----Ccceeeeecccc-CCeEEEEEccCC---------cEEEE
Q 014475           86 IA-----------ANSHGTYIAGGGQSGDIYMWEVA-----SGRLLKKWHAHY-RAVTCLVFSEDG---------SFLIS  139 (424)
Q Consensus        86 ~~-----------~s~~~~~l~~~~~dg~v~iwd~~-----~~~~~~~~~~~~-~~i~~~~~~~~~---------~~l~s  139 (424)
                      ++           .||||+.+|.+..||.++.|.+.     .-.++...+.|+ .+-.|.-++.+.         .++++
T Consensus       230 ~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~It  309 (1283)
T KOG1916|consen  230 MAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRIT  309 (1283)
T ss_pred             HHHHhhchhhheeeCCCCcEEEEeecCCccceeeeeeeccccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEe
Confidence            33           59999999999999998888763     234555667776 333333343221         23444


Q ss_pred             eeC-CCcEEEEeCC
Q 014475          140 GSE-DGCVRIWSLL  152 (424)
Q Consensus       140 ~~~-dg~i~iwd~~  152 (424)
                      ++. +..+++|.-.
T Consensus       310 ttd~nre~k~w~~a  323 (1283)
T KOG1916|consen  310 TTDVNREEKFWAEA  323 (1283)
T ss_pred             cccCCcceeEeecc
Confidence            443 4568888763

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=94.51  E-value=5.7  Score=39.57  Aligned_cols=87  Identities=15%  Similarity=0.165  Sum_probs=55.4

Q ss_pred             cCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcc-cchhccccccc-ceEEe--------ecCCcCceeEEEEEEcC-cee
Q 014475          122 YRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTV-FEECESQRASH-LYLHS--------FTGHTLRITDIVIGYGG-VSA  190 (424)
Q Consensus       122 ~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~-~~~~~--------~~~~~~~i~~~~~~~~~-~~~  190 (424)
                      .-.|..+.++|+|.+++..|..| |.|-.+... .........+. ...+.        ...+...|..+.|+|.+ .+.
T Consensus        84 ~f~v~~i~~n~~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~  162 (717)
T PF10168_consen   84 LFEVHQISLNPTGSLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDS  162 (717)
T ss_pred             ceeEEEEEECCCCCEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCC
Confidence            35788999999999999888865 555555321 10000000011 01111        12345688999999975 237


Q ss_pred             EEEEEeCCCcEEEEecCCC
Q 014475          191 TIVSASEDRTCKVWSLLKG  209 (424)
Q Consensus       191 ~l~~~~~d~~v~iwd~~~~  209 (424)
                      .|+.-+.|+++++||+...
T Consensus       163 ~l~vLtsdn~lR~y~~~~~  181 (717)
T PF10168_consen  163 HLVVLTSDNTLRLYDISDP  181 (717)
T ss_pred             eEEEEecCCEEEEEecCCC
Confidence            8899999999999999753

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=94.42  E-value=0.089  Score=51.24  Aligned_cols=145  Identities=18%  Similarity=0.253  Sum_probs=83.8

Q ss_pred             eeEEEEECCC--Cce----eeee--cCCCCeeEEEEC---CCCCEEEEecCCCcEEEEEccCcceeeeeccccCCeEEEE
Q 014475           61 GSILYWSWSK--PQV----EVKS--LPAEPIKPIAAN---SHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLV  129 (424)
Q Consensus        61 g~i~vwd~~~--~~~----~~~~--~~~~~v~~~~~s---~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~  129 (424)
                      |.+.||+++-  +++    ....  .....+.-+.|.   ++..++..+-.++.+++.+..+... ..+.+|...+..++
T Consensus       153 g~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a  231 (1283)
T KOG1916|consen  153 GELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMA  231 (1283)
T ss_pred             hhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCceeEeeechHHH-HHHHhcCCCcccHH
Confidence            8899999873  222    1111  123344555554   4678888888889988877654432 34455766555444


Q ss_pred             -----------EccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCc-CceeEEEEEEc-------Ccee
Q 014475          130 -----------FSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHT-LRITDIVIGYG-------GVSA  190 (424)
Q Consensus       130 -----------~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~-------~~~~  190 (424)
                                 .+|||+.++.+..||.++.|.+.-..      .....+.+.++.|. .+-.|..+...       +.-.
T Consensus       232 ~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g------~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~  305 (1283)
T KOG1916|consen  232 FFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITG------KIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWV  305 (1283)
T ss_pred             HHhhchhhheeeCCCCcEEEEeecCCccceeeeeeec------cccHhhhhccCCCCCCCceeeeeccccccCCccceeE
Confidence                       57899999999999999988773211      12233444555555 22222222211       1013


Q ss_pred             EEEEEe-CCCcEEEEecCCCcee
Q 014475          191 TIVSAS-EDRTCKVWSLLKGRLL  212 (424)
Q Consensus       191 ~l~~~~-~d~~v~iwd~~~~~~~  212 (424)
                      ++++++ .+..+++|.....+++
T Consensus       306 ~~Itttd~nre~k~w~~a~w~Cl  328 (1283)
T KOG1916|consen  306 LRITTTDVNREEKFWAEAPWQCL  328 (1283)
T ss_pred             EEEecccCCcceeEeeccchhhh
Confidence            344444 3556888987766665

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=94.39  E-value=2.1  Score=42.51  Aligned_cols=81  Identities=14%  Similarity=0.197  Sum_probs=53.2

Q ss_pred             cceeEEEECCCCCEEEEEeCCCcEEEEEcCCC-CCCC----CCcCceeee-------eecccCcCeEEEEecC----CCE
Q 014475          219 SVIDAIALDPAEHVFYAGSRDGSIYIAALNAE-SPST----SSYGMHIIG-------SLSDHSKAVTCLAYST----GDL  282 (424)
Q Consensus       219 ~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~----~~~~~~~~~-------~~~~~~~~i~~~~~~~----~~~  282 (424)
                      -.|..+.++|+|.+++..+..| |.|..+... ....    ......+-.       ....+...|..+.|+|    +..
T Consensus        85 f~v~~i~~n~~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~  163 (717)
T PF10168_consen   85 FEVHQISLNPTGSLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSH  163 (717)
T ss_pred             eeEEEEEECCCCCEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCe
Confidence            4688999999999999988765 555555331 1000    000001100       0123456799999999    478


Q ss_pred             EEEeCCCCcEEEEeCCCC
Q 014475          283 LISGSEDGMVRVWDPITH  300 (424)
Q Consensus       283 l~t~~~dg~i~iwd~~~~  300 (424)
                      |+.-..|+++|+||+...
T Consensus       164 l~vLtsdn~lR~y~~~~~  181 (717)
T PF10168_consen  164 LVVLTSDNTLRLYDISDP  181 (717)
T ss_pred             EEEEecCCEEEEEecCCC
Confidence            999999999999999754

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.32  E-value=1.1  Score=46.36  Aligned_cols=73  Identities=11%  Similarity=0.007  Sum_probs=45.8

Q ss_pred             ccCcCeEEEEecCCCEEEEeCCCCcEEEEeCCCCcEEEEEeccCCCeeEEEEEecCceeeeccCCCceeeccCCCCCC
Q 014475          267 DHSKAVTCLAYSTGDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGSQL  344 (424)
Q Consensus       267 ~~~~~i~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~d~~i~iw~~~~~~~  344 (424)
                      -+..++.+..+....-++.+...+.+-+|+.........+.....     .+++++..++++-.||.+.+||...+++
T Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~v~~h~Dgs~~fWd~s~g~~  268 (993)
T KOG1983|consen  196 LIEYESLQVLYYSPTKILIGFNRGLVVIKDRASKYVQSAYLPNGQ-----LESRDGSHFVSYHTDGSYAFWDVSSGKL  268 (993)
T ss_pred             ccccccceeeeecCCCcceeeeeeeeeehhcccccchhhcccccc-----cCccCCceEEEEEecCCEEeeecCCCce
Confidence            345555665554433334445567777777554443333332211     2288899999999999999999998755

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=94.11  E-value=1.6  Score=40.95  Aligned_cols=150  Identities=15%  Similarity=0.313  Sum_probs=91.1

Q ss_pred             CCeEEEEEccCCcEEE-Eee--CCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCce--eEEEEEeC
Q 014475          123 RAVTCLVFSEDGSFLI-SGS--EDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVS--ATIVSASE  197 (424)
Q Consensus       123 ~~i~~~~~~~~~~~l~-s~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~--~~l~~~~~  197 (424)
                      .++..++|. ||+.++ +.-  .+|.+++=|.              .    .-+.-..|..+.|.|-+..  ..+++.-.
T Consensus        20 HPvhGlaWT-DGkqVvLT~L~l~~gE~kfGds--------------~----viGqFEhV~GlsW~P~~~~~~paLLAVQH   80 (671)
T PF15390_consen   20 HPVHGLAWT-DGKQVVLTDLQLHNGEPKFGDS--------------K----VIGQFEHVHGLSWAPPCTADTPALLAVQH   80 (671)
T ss_pred             ccccceEec-CCCEEEEEeeeeeCCccccCCc--------------c----EeeccceeeeeeecCcccCCCCceEEEec
Confidence            478899997 565544 322  2333333332              1    1233346788899886321  35666677


Q ss_pred             CCcEEEEecC-----CCceeee----ee--cCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeec
Q 014475          198 DRTCKVWSLL-----KGRLLRN----IV--FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLS  266 (424)
Q Consensus       198 d~~v~iwd~~-----~~~~~~~----~~--~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~  266 (424)
                      .+.|.+|.+.     +.+.+..    +.  .+--...+.|+|....|++-.....-.+++++...        ..+..-.
T Consensus        81 kkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~--------srVkaDi  152 (671)
T PF15390_consen   81 KKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDS--------SRVKADI  152 (671)
T ss_pred             cceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCC--------ceEEEec
Confidence            8899999875     2222221    11  22234578899999988887766555667766554        2333333


Q ss_pred             ccCcCeEEEEecC-CCEEEEe-CCCCcEEEEeCCC
Q 014475          267 DHSKAVTCLAYST-GDLLISG-SEDGMVRVWDPIT  299 (424)
Q Consensus       267 ~~~~~i~~~~~~~-~~~l~t~-~~dg~i~iwd~~~  299 (424)
                      ...+.|.|.+|.+ |+.|+.+ +..=.-++||-..
T Consensus       153 ~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~q  187 (671)
T PF15390_consen  153 KTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQ  187 (671)
T ss_pred             cCCceEEEEEecCcCCEEEEEeCCeEEEEEecCch
Confidence            5668899999999 7665554 4444578898543

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=94.10  E-value=0.28  Score=28.23  Aligned_cols=31  Identities=35%  Similarity=0.573  Sum_probs=26.2

Q ss_pred             cCeEEEEecC--C--CEEEEeCCCCcEEEEeCCCC
Q 014475          270 KAVTCLAYST--G--DLLISGSEDGMVRVWDPITH  300 (424)
Q Consensus       270 ~~i~~~~~~~--~--~~l~t~~~dg~i~iwd~~~~  300 (424)
                      +.|.++.|+|  +  ++|+.+-.-|.|.|+|++++
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~   35 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN   35 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence            4688999997  4  68888888899999999953

It contains a characteristic DLL sequence motif.

>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]

Probab=94.04  E-value=0.0082  Score=53.93  Aligned_cols=148  Identities=17%  Similarity=0.197  Sum_probs=104.6

Q ss_pred             EEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeeecCcceeEEEECCCCCEEEE-EeCCCcEEEEEcCCCCCCCCCcC
Q 014475          180 DIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYA-GSRDGSIYIAALNAESPSTSSYG  258 (424)
Q Consensus       180 ~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~-~~~dg~i~i~d~~~~~~~~~~~~  258 (424)
                      ...|-+.+  .-++.++.+..+..|| +.++.......++....++|+.++..+++ +-..+.+++||+.......    
T Consensus        39 ~~~w~~e~--~nlavaca~tiv~~YD-~agq~~le~n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqq----  111 (615)
T KOG2247|consen   39 IHRWRPEG--HNLAVACANTIVIYYD-KAGQVILELNPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQ----  111 (615)
T ss_pred             eeeEecCC--CceehhhhhhHHHhhh-hhcceecccCCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHH----
Confidence            34566665  4588888888999999 45666777777888888999988776554 5677899999998864211    


Q ss_pred             ceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCCCcEEEEEeccCCCeeEEEEEecCceeeeccCCCceeec
Q 014475          259 MHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSS  337 (424)
Q Consensus       259 ~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~d~~i~iw  337 (424)
                         +..-..|....  +.|++ ...++.+-..|.+.|++..+.+.+...-.|...++++++.+.+. .+.++.|..+.+-
T Consensus       112 ---LE~gg~~s~sl--l~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~-vil~dcd~~L~v~  185 (615)
T KOG2247|consen  112 ---LESGGTSSKSL--LAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDY-VILCDCDNTLSVT  185 (615)
T ss_pred             ---HhccCcchHHH--HhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEecccce-eeecCcHHHHHHh
Confidence               11111122222  67888 77888888999999999888777766656889999999998874 4455555555444


Q ss_pred             cCC
Q 014475          338 RRH  340 (424)
Q Consensus       338 ~~~  340 (424)
                      ...
T Consensus       186 ~qe  188 (615)
T KOG2247|consen  186 TQE  188 (615)
T ss_pred             hhc
Confidence            433

>TIGR01063 gyrA DNA gyrase, A subunit

Probab=93.73  E-value=8.9  Score=38.95  Aligned_cols=250  Identities=12%  Similarity=0.016  Sum_probs=127.7

Q ss_pred             EECCCCCEEEEecCCCcEEEEEccCcce---------eeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccch
Q 014475           87 AANSHGTYIAGGGQSGDIYMWEVASGRL---------LKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEE  157 (424)
Q Consensus        87 ~~s~~~~~l~~~~~dg~v~iwd~~~~~~---------~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~  157 (424)
                      .+-++...+++-+.+|.|+-.+..+...         ...++. ...+..+........++..+..|.+...........
T Consensus       491 dli~~e~~~vllS~~GyIKri~~~~~~~~~~~~~g~s~~klKe-~D~l~~~~~~~t~d~LllfTs~Grv~~l~~~~IP~~  569 (800)
T TIGR01063       491 DLIARENVVVTLSHNGYVKRVPVSAYRLQKRGGKGVSGADMKD-DDFIEQLLVASTHDYLLFFTNRGKVYWLKVYQIPEA  569 (800)
T ss_pred             hccCcceEEEEEcCCCEEEecchhhhhhhcccCcCccccccCC-CCeeEEEEEecCCCeEEEEeCCCcEEEEEhhhCcCC
Confidence            3345566777888899888776543221         111222 234444444455666777777888777655432221


Q ss_pred             hcccccccceE---EeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCce-------eeeeecCcceeEEEEC
Q 014475          158 CESQRASHLYL---HSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRL-------LRNIVFPSVIDAIALD  227 (424)
Q Consensus       158 ~~~~~~~~~~~---~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~-------~~~~~~~~~i~~~~~~  227 (424)
                      ..  ......+   ..+...+.-+..+.+..-.+...++..+.+|.++-.++..-..       ...+...+.+..+...
T Consensus       570 ~r--~~~G~~i~~ll~L~~~E~Iv~~i~~~~~~~~~~lvliT~~GyiKRi~l~~~~~~~r~G~~aiklke~D~lv~v~~~  647 (800)
T TIGR01063       570 SR--TAKGKPIVNLLPLQPDERITAILSVKEFDDGLYLFFATKNGVVKKTSLTEFSNIRSNGIIAIKLDDGDELISVRLT  647 (800)
T ss_pred             Cc--CCCCcCHHHhccCCCCCeEEEEEEeccCCCCCEEEEEeCCCEEEEEEhHHhhhhccCCcccccCCCCCEEEEEEEe
Confidence            10  0111111   1222233334444433222226789999999999887653221       1122234445444444


Q ss_pred             CCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCC-------
Q 014475          228 PAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPIT-------  299 (424)
Q Consensus       228 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~-------  299 (424)
                      .....++..+..|.+..+....-..............+.. ...|.++..-+ +..++..+..|.++...+..       
T Consensus       648 ~~~d~lll~Ts~Gr~~r~~v~eIp~~gr~~~Gv~~i~L~~-~E~Vv~~~~v~~~~~ll~vT~~G~~Kr~~l~e~~~~~R~  726 (800)
T TIGR01063       648 SGDDEVMLGSKNGKAVRFPEEDVRPMGRAARGVRGIKLKN-EDFVVSLLVVSEESYLLIVTENGYGKRTSIEEYRETSRG  726 (800)
T ss_pred             CCCCEEEEEECCCcEEEEEhhhcCCcCCCCCCeecccCCC-CCEEEEEEEeccccEEEEEecCCcEEEEEHHHccccCCC
Confidence            4556677778888877776654322111111111122322 23344444333 55788888889888876432       


Q ss_pred             CcEEEEEe--ccCCCeeEEEEEecCceeeeccCCCceeeccCC
Q 014475          300 HNIVRMFR--LAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRH  340 (424)
Q Consensus       300 ~~~~~~~~--~~~~~v~~l~~s~~~~~l~~~~~d~~i~iw~~~  340 (424)
                      ++-+..++  ...+.+-.+....+...++..+.+|.+..+...
T Consensus       727 ~kGv~~ikl~~~~d~lv~~~~v~~~~~v~liT~~G~~lrf~~~  769 (800)
T TIGR01063       727 GKGVKSIKITDRNGQVVGAIAVDDDDELMLITSAGKLIRTSVQ  769 (800)
T ss_pred             CcceEEEEccCCCCeEEEEEEecCCCeEEEEecCCeEEEeeHh
Confidence            22222332  222444444444444456666677776665544

This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV.

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=93.71  E-value=3.1  Score=33.64  Aligned_cols=177  Identities=13%  Similarity=0.052  Sum_probs=99.0

Q ss_pred             CCcEEEEeeCC--CcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCc
Q 014475          133 DGSFLISGSED--GCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGR  210 (424)
Q Consensus       133 ~~~~l~s~~~d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~  210 (424)
                      ++.++.+.+.-  ..|++||+.++..........    ..+  ....++.     -++ .+-.-.-.+|.-..+|.++-+
T Consensus        55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~----~~~--FgEGit~-----~gd-~~y~LTw~egvaf~~d~~t~~  122 (262)
T COG3823          55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAP----DTV--FGEGITK-----LGD-YFYQLTWKEGVAFKYDADTLE  122 (262)
T ss_pred             CCEEEEeccccccceeEEEeccCceEEEEeecCC----ccc--cccceee-----ccc-eEEEEEeccceeEEEChHHhh
Confidence            45666666653  369999998654322211110    000  1111211     121 233344567888999999999


Q ss_pred             eeeeeecCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecc-cCcCeEEEEecCCCEEEEeCCC
Q 014475          211 LLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSD-HSKAVTCLAYSTGDLLISGSED  289 (424)
Q Consensus       211 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~l~t~~~d  289 (424)
                      .+..+..++.-..++.  ++..|+.+.....++.-|..+-....     ....+..+ .-..++-+.|-.|...|-.=.+
T Consensus       123 ~lg~~~y~GeGWgLt~--d~~~LimsdGsatL~frdP~tfa~~~-----~v~VT~~g~pv~~LNELE~VdG~lyANVw~t  195 (262)
T COG3823         123 ELGRFSYEGEGWGLTS--DDKNLIMSDGSATLQFRDPKTFAELD-----TVQVTDDGVPVSKLNELEWVDGELYANVWQT  195 (262)
T ss_pred             hhcccccCCcceeeec--CCcceEeeCCceEEEecCHHHhhhcc-----eEEEEECCeecccccceeeeccEEEEeeeee
Confidence            9988887777666665  45556666555566666655432111     11111211 1123344555545555555555


Q ss_pred             CcEEEEeCCCCcEEEEEe------------ccCCCeeEEEEEecC-ceeeec
Q 014475          290 GMVRVWDPITHNIVRMFR------------LAKGPVNNILVVRRP-LYLNLG  328 (424)
Q Consensus       290 g~i~iwd~~~~~~~~~~~------------~~~~~v~~l~~s~~~-~~l~~~  328 (424)
                      ..|...|..+|+.+..+.            .+....+.+++.|++ +++++|
T Consensus       196 ~~I~rI~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG  247 (262)
T COG3823         196 TRIARIDPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG  247 (262)
T ss_pred             cceEEEcCCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence            566677777777776654            234467889999987 566666

>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein

Probab=93.71  E-value=4.9  Score=35.89  Aligned_cols=106  Identities=14%  Similarity=0.242  Sum_probs=51.4

Q ss_pred             CCCEEEEecCCC-----cEEEEEccCcce---eeee---ccccCCeEEEEEccCCcEEEEeeCC-----CcEEEEeCCcc
Q 014475           91 HGTYIAGGGQSG-----DIYMWEVASGRL---LKKW---HAHYRAVTCLVFSEDGSFLISGSED-----GCVRIWSLLTV  154 (424)
Q Consensus        91 ~~~~l~~~~~dg-----~v~iwd~~~~~~---~~~~---~~~~~~i~~~~~~~~~~~l~s~~~d-----g~i~iwd~~~~  154 (424)
                      ++.+++.|+.++     .+..||+.+.+.   ...+   ...... .+++.. +++..+.|+..     ..+..||+.+ 
T Consensus        72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~-~~~~~~-~~~iYv~GG~~~~~~~~~v~~yd~~~-  148 (323)
T TIGR03548        72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFEN-GSACYK-DGTLYVGGGNRNGKPSNKSYLFNLET-  148 (323)
T ss_pred             CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccC-ceEEEE-CCEEEEEeCcCCCccCceEEEEcCCC-
Confidence            566777777543     477777766543   1122   111111 122222 56677777642     3577788755 


Q ss_pred             cchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCC----cEEEEecCCCc
Q 014475          155 FEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDR----TCKVWSLLKGR  210 (424)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~----~v~iwd~~~~~  210 (424)
                              .....+..+... ......+...++  ++.+.|+.++    .+..||+.+.+
T Consensus       149 --------~~W~~~~~~p~~-~r~~~~~~~~~~--~iYv~GG~~~~~~~~~~~yd~~~~~  197 (323)
T TIGR03548       149 --------QEWFELPDFPGE-PRVQPVCVKLQN--ELYVFGGGSNIAYTDGYKYSPKKNQ  197 (323)
T ss_pred             --------CCeeECCCCCCC-CCCcceEEEECC--EEEEEcCCCCccccceEEEecCCCe
Confidence                    222222111111 111122223344  6777777654    25678887654

Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.

>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]

Probab=93.53  E-value=0.78  Score=41.47  Aligned_cols=164  Identities=16%  Similarity=0.134  Sum_probs=100.1

Q ss_pred             CCCCeeEEEECCCCCEEEEecCCCcEEEEEccCcceee-ee-ccccC----CeE-EEEEccCCcEEEEeeCCCcEEEE-e
Q 014475           79 PAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLK-KW-HAHYR----AVT-CLVFSEDGSFLISGSEDGCVRIW-S  150 (424)
Q Consensus        79 ~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~-~~-~~~~~----~i~-~~~~~~~~~~l~s~~~dg~i~iw-d  150 (424)
                      ...+|..+-..|||+.+..-+. ..+.++++.+..... .+ ....+    .|+ .+..-..|.-+++++.||-|.-| |
T Consensus       219 ~~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~vsQWFd  297 (733)
T COG4590         219 PFSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLVSQWFD  297 (733)
T ss_pred             CccchHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCceeeeee
Confidence            4567888889999998887665 678999886653221 11 11111    122 12222345668888899988766 5


Q ss_pred             CCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeeecCcceeEEEECCCC
Q 014475          151 LLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAE  230 (424)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~i~~~~~~~~~  230 (424)
                      .+....      .....++.++-...++..+  .|+...+-+++-+..|++..+.....+.+..-..-..+..++++|.+
T Consensus       298 vr~~~~------p~l~h~R~f~l~pa~~~~l--~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~~~~~~~~~~~~Sp~~  369 (733)
T COG4590         298 VRRDGQ------PHLNHIRNFKLAPAEVQFL--LPETNRKGFYSLYRNGTLQSFYSTSEKLLLFERAYQAPQLVAMSPNQ  369 (733)
T ss_pred             eecCCC------CcceeeeccccCcccceee--ccccccceEEEEcCCCceeeeecccCcceehhhhhcCcceeeeCccc
Confidence            544211      1111222233223333333  34444477888889999988876554444333344477888999999


Q ss_pred             CEEEEEeCCCcEEEEEcCCCCC
Q 014475          231 HVFYAGSRDGSIYIAALNAESP  252 (424)
Q Consensus       231 ~~l~~~~~dg~i~i~d~~~~~~  252 (424)
                      .++++- +.|.++++.+++..+
T Consensus       370 ~~Ll~e-~~gki~~~~l~Nr~P  390 (733)
T COG4590         370 AYLLSE-DQGKIRLAQLENRNP  390 (733)
T ss_pred             chheee-cCCceEEEEecCCCC
Confidence            988764 457899999988754

>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family

Probab=93.46  E-value=5.7  Score=35.87  Aligned_cols=40  Identities=3%  Similarity=0.018  Sum_probs=19.3

Q ss_pred             CcEEEEecCCCceeeeeecC--cceeEEEECCCCCEEEEEeC
Q 014475          199 RTCKVWSLLKGRLLRNIVFP--SVIDAIALDPAEHVFYAGSR  238 (424)
Q Consensus       199 ~~v~iwd~~~~~~~~~~~~~--~~i~~~~~~~~~~~l~~~~~  238 (424)
                      ..+..||..+.+-...-..+  .........-++++++.|+.
T Consensus       168 ~~v~~YDp~t~~W~~~~~~p~~~r~~~~~~~~~~~iyv~GG~  209 (346)
T TIGR03547       168 KNVLSYDPSTNQWRNLGENPFLGTAGSAIVHKGNKLLLINGE  209 (346)
T ss_pred             ceEEEEECCCCceeECccCCCCcCCCceEEEECCEEEEEeee
Confidence            45788888765433221111  11111122235677777764

Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.

>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=93.44  E-value=7.2  Score=40.56  Aligned_cols=139  Identities=17%  Similarity=0.210  Sum_probs=82.9

Q ss_pred             CCCceEEEeCCCCceEEEeeCCCCCCCceEEec---ceeecCCCccccCCCCceeEEEEECCCCce----eee-----e-
Q 014475           11 ADTGIGCWDLESGAEQLRYKSCASPPHGLACVG---QRFLASSQLREQPSASSGSILYWSWSKPQV----EVK-----S-   77 (424)
Q Consensus        11 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~---~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~----~~~-----~-   77 (424)
                      -|+.+.+|+.+++.....+.+....+-.|.-+.   .-|.|.=+++++.+.. -.|.++-+...+.    ...     . 
T Consensus        97 iDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~-~ei~ilgV~~~~~~~~~~~f~~~~~i~  175 (1311)
T KOG1900|consen   97 IDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATP-VEIVILGVSFDEFTGELSIFNTSFKIS  175 (1311)
T ss_pred             eCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEeccc-ceEEEEEEEeccccCcccccccceeee
Confidence            578999999999888877766554444443332   2355665666555554 6777776543221    111     1 


Q ss_pred             cCCCCeeEEEECCCCCEEEEecCCCcEEEEEc----cCc---c-e----------------eeeec-cccCCeEEEEEcc
Q 014475           78 LPAEPIKPIAANSHGTYIAGGGQSGDIYMWEV----ASG---R-L----------------LKKWH-AHYRAVTCLVFSE  132 (424)
Q Consensus        78 ~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~----~~~---~-~----------------~~~~~-~~~~~i~~~~~~~  132 (424)
                      ..+-.|+|+....+|+.+.+| .||  .+|.+    ..+   + +                +-.+. .+..+|..+....
T Consensus       176 ~dg~~V~~I~~t~nGRIF~~G-~dg--~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~  252 (1311)
T KOG1900|consen  176 VDGVSVNCITYTENGRIFFAG-RDG--NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDN  252 (1311)
T ss_pred             cCCceEEEEEeccCCcEEEee-cCC--CEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEecc
Confidence            125578899988888877765 556  44443    111   0 0                00112 3455777777766


Q ss_pred             CCcEEEEeeCCCcEEEEeCCc
Q 014475          133 DGSFLISGSEDGCVRIWSLLT  153 (424)
Q Consensus       133 ~~~~l~s~~~dg~i~iwd~~~  153 (424)
                      .-+.+.+-+..|.|.+||+..
T Consensus       253 SR~IlY~lsek~~v~~Y~i~~  273 (1311)
T KOG1900|consen  253 SRNILYVLSEKGTVSAYDIGG  273 (1311)
T ss_pred             ccceeeeeccCceEEEEEccC
Confidence            666666777777777777754

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=93.41  E-value=3.3  Score=33.48  Aligned_cols=106  Identities=11%  Similarity=0.003  Sum_probs=58.9

Q ss_pred             EEEeecCCCCCceEEEeCCCCceEEEeeCC--CCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCceeeeecCC
Q 014475            3 LLIASSSVADTGIGCWDLESGAEQLRYKSC--ASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSLPA   80 (424)
Q Consensus         3 ~~lat~~~~dg~i~vwd~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~~~~~   80 (424)
                      ++.-||-+....|++||+.+|+.+..-+-.  ..-..+++       .-+.++-.-...+|.-..+|.++-+..-...-.
T Consensus        58 i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit-------~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~y~  130 (262)
T COG3823          58 ILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGIT-------KLGDYFYQLTWKEGVAFKYDADTLEELGRFSYE  130 (262)
T ss_pred             EEEeccccccceeEEEeccCceEEEEeecCCcccccccee-------eccceEEEEEeccceeEEEChHHhhhhcccccC
Confidence            344455545567999999999988654322  11112222       222232222233377777777665554444444


Q ss_pred             CCeeEEEECCCCCEEEEecCCCcEEEEEccCcceeee
Q 014475           81 EPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKK  117 (424)
Q Consensus        81 ~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~  117 (424)
                      +.=..++-  |+..|+.+....+++.-|.++-....+
T Consensus       131 GeGWgLt~--d~~~LimsdGsatL~frdP~tfa~~~~  165 (262)
T COG3823         131 GEGWGLTS--DDKNLIMSDGSATLQFRDPKTFAELDT  165 (262)
T ss_pred             Ccceeeec--CCcceEeeCCceEEEecCHHHhhhcce
Confidence            44455543  455577766666788888776544433

>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]

Probab=93.27  E-value=0.013  Score=52.70  Aligned_cols=151  Identities=15%  Similarity=0.092  Sum_probs=100.6

Q ss_pred             ccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCc
Q 014475          121 HYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRT  200 (424)
Q Consensus       121 ~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~  200 (424)
                      +........|.|++.-++.++.+..+..||-..           . ... -....+...+++|..+++ ..++.+-..+.
T Consensus        33 alv~pi~~~w~~e~~nlavaca~tiv~~YD~ag-----------q-~~l-e~n~tg~aldm~wDkegd-vlavlAek~~p   98 (615)
T KOG2247|consen   33 ALVGPIIHRWRPEGHNLAVACANTIVIYYDKAG-----------Q-VIL-ELNPTGKALDMAWDKEGD-VLAVLAEKTGP   98 (615)
T ss_pred             hccccceeeEecCCCceehhhhhhHHHhhhhhc-----------c-eec-ccCCchhHhhhhhccccc-hhhhhhhcCCC
Confidence            334445567888777788888888888898632           1 111 112344555677777664 55666777889


Q ss_pred             EEEEecCCCceeee-eecCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC
Q 014475          201 CKVWSLLKGRLLRN-IVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST  279 (424)
Q Consensus       201 v~iwd~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  279 (424)
                      +.+||+.+...... ......-.-+.|++....++.+...|.+.+++.....         .+.....|...++++++.+
T Consensus        99 iylwd~n~eytqqLE~gg~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR---------~iiv~Gkh~RRgtq~av~l  169 (615)
T KOG2247|consen   99 IYLWDVNSEYTQQLESGGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSR---------RIIVMGKHQRRGTQIAVTL  169 (615)
T ss_pred             eeechhhhhhHHHHhccCcchHHHHhhccCCccccccccccceEEEeccchh---------hhhhhcccccceeEEEecc
Confidence            99999975432211 1122222237899999999999999999999998853         2333434889999999998


Q ss_pred             CCEEEEeCCCCcEEE
Q 014475          280 GDLLISGSEDGMVRV  294 (424)
Q Consensus       280 ~~~l~t~~~dg~i~i  294 (424)
                      .++.+.++.|..+.+
T Consensus       170 Ed~vil~dcd~~L~v  184 (615)
T KOG2247|consen  170 EDYVILCDCDNTLSV  184 (615)
T ss_pred             cceeeecCcHHHHHH
Confidence            777777776655433

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=93.10  E-value=0.96  Score=37.63  Aligned_cols=65  Identities=17%  Similarity=0.231  Sum_probs=44.9

Q ss_pred             EEEcCceeEEEEEeCCCcEEEEecCCCceeeee---------------ecCcceeEEEECCCCCEEEEEeCCCcEEEEEc
Q 014475          183 IGYGGVSATIVSASEDRTCKVWSLLKGRLLRNI---------------VFPSVIDAIALDPAEHVFYAGSRDGSIYIAAL  247 (424)
Q Consensus       183 ~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~---------------~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~  247 (424)
                      +...+  .++++.+.+|.+++||+.+++.+..-               .....|..+.++.+|.-+++-+ +|..+.|+.
T Consensus        18 l~~~~--~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~   94 (219)
T PF07569_consen   18 LECNG--SYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSP   94 (219)
T ss_pred             EEeCC--CEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEecc
Confidence            33444  78999999999999999988765433               1224567777777776555443 567777777


Q ss_pred             CCC
Q 014475          248 NAE  250 (424)
Q Consensus       248 ~~~  250 (424)
                      +-.
T Consensus        95 ~L~   97 (219)
T PF07569_consen   95 DLG   97 (219)
T ss_pred             ccc
Confidence            654

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PRK05560 DNA gyrase subunit A; Validated

Probab=93.10  E-value=11  Score=38.29  Aligned_cols=249  Identities=12%  Similarity=-0.015  Sum_probs=125.6

Q ss_pred             CCCCCEEEEecCCCcEEEEEccCcce---------eeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhc
Q 014475           89 NSHGTYIAGGGQSGDIYMWEVASGRL---------LKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECE  159 (424)
Q Consensus        89 s~~~~~l~~~~~dg~v~iwd~~~~~~---------~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~  159 (424)
                      -++...++.-+.+|.|+--.+.+...         ...++.. ..+..+........++..+..|.+.............
T Consensus       495 I~~E~v~vllS~~GyIKri~~~~~~~~~~~~~g~~~~klKe~-D~l~~~~~~~t~d~LllfTs~Grv~~l~v~~iP~~~~  573 (805)
T PRK05560        495 IPEEDVVVTLTHGGYIKRTPLDEYRAQRRGGKGVSGAKTKED-DFVEHLFVASTHDTLLFFTNRGRVYRLKVYEIPEASR  573 (805)
T ss_pred             cCCCCEEEEEeCCCEEEEcchhhhhhhcccCCCccccccCCC-CeeEEEEEecCCCeEEEEecCCeEEEEEhhhCcCCCc
Confidence            45567777888899888776543221         1112222 3344444444556677777788877765543211110


Q ss_pred             ccccccceE---EeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCC-------ceeeeeecCcceeEEEECCC
Q 014475          160 SQRASHLYL---HSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKG-------RLLRNIVFPSVIDAIALDPA  229 (424)
Q Consensus       160 ~~~~~~~~~---~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~-------~~~~~~~~~~~i~~~~~~~~  229 (424)
                        ......+   ..+...+.-+..+.+....+...++..+.+|.++--++..-       .....+...+.+..+.....
T Consensus       574 --~~~G~~i~~ll~L~~~E~Iv~~i~~~~~~~e~~lvlvTk~GyiKRi~l~~~~~~~r~G~~~ikLke~D~lv~v~~~~~  651 (805)
T PRK05560        574 --TARGRPIVNLLPLEPGEKITAILPVREFDDDKYLFFATKNGTVKKTSLSEFSNIRSNGIIAINLDEGDELIGVRLTDG  651 (805)
T ss_pred             --CCCCeEHHHhcCCCCCceEEEEEeccCCCCCCEEEEEeCCCEEEEEEhHHhhhcccCCceeeccCCCCEEEEEEEeCC
Confidence              0111111   12232333344444442112267899999999987765432       22222333444545445555


Q ss_pred             CCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCC-------Cc
Q 014475          230 EHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPIT-------HN  301 (424)
Q Consensus       230 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~-------~~  301 (424)
                      ...++..+..|.+..+....-..............+.....-+..+.+.+ +..++..+..|.++-..+..       ++
T Consensus       652 ~d~lll~T~~Gr~~r~~~~eIp~~gr~~~Gv~~i~L~~~E~Vv~~~~v~~~~~~il~vTk~G~iKr~~l~e~~~~~R~~k  731 (805)
T PRK05560        652 DDDILLATKNGKAIRFPESDVRPMGRTARGVRGIKLREGDEVVSMDVVREDSQEILTVTENGYGKRTPVSEYRLQGRGGK  731 (805)
T ss_pred             CCEEEEEECCCcEEEEEhhhcCccCcccCCcccccCCCCCEEEEEEEEcCCCcEEEEEEeCCeEEEEEHHHhhccCCCCC
Confidence            56677788888888777654322211111122223332223333344444 34788888889888776432       11


Q ss_pred             EEEEEe--ccCCCeeEEEEEecCceeeeccCCCceeeccCC
Q 014475          302 IVRMFR--LAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRH  340 (424)
Q Consensus       302 ~~~~~~--~~~~~v~~l~~s~~~~~l~~~~~d~~i~iw~~~  340 (424)
                      -+..++  ...+.+-.+........++..+.+|.+..++..
T Consensus       732 G~~~lkl~~~~d~lv~v~~v~~~~~v~i~T~~G~~lrf~~~  772 (805)
T PRK05560        732 GVITIKITEKNGKLVGALPVDDDDEIMLITDSGKLIRTRVS  772 (805)
T ss_pred             cEEeeeccCCCCeEEEEEEecCCCeEEEEecCCeEEEEEHH
Confidence            222222  222344443333333445666667776666554

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=93.02  E-value=6.4  Score=35.88  Aligned_cols=104  Identities=13%  Similarity=0.150  Sum_probs=53.3

Q ss_pred             CCeEEEEEccCCcEEEEee-----------CCC-cEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCcee
Q 014475          123 RAVTCLVFSEDGSFLISGS-----------EDG-CVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSA  190 (424)
Q Consensus       123 ~~i~~~~~~~~~~~l~s~~-----------~dg-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  190 (424)
                      .....|+|.++|+++++-.           ..+ .|.+++-.++.       ........+.........+++.+++   
T Consensus        14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgd-------G~~d~~~vfa~~l~~p~Gi~~~~~G---   83 (367)
T TIGR02604        14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGD-------GKYDKSNVFAEELSMVTGLAVAVGG---   83 (367)
T ss_pred             CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCC-------CCcceeEEeecCCCCccceeEecCC---
Confidence            4567789999888776642           223 67666543311       1111122232233345677887664   


Q ss_pred             EEEEEeCCCcEEEEecCCC-----ce--e-eeeec-----CcceeEEEECCCCCEEEEEe
Q 014475          191 TIVSASEDRTCKVWSLLKG-----RL--L-RNIVF-----PSVIDAIALDPAEHVFYAGS  237 (424)
Q Consensus       191 ~l~~~~~d~~v~iwd~~~~-----~~--~-~~~~~-----~~~i~~~~~~~~~~~l~~~~  237 (424)
                       |++++.....++.|....     +.  + ..+..     ......++|.|+|.+.++-+
T Consensus        84 -lyV~~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G  142 (367)
T TIGR02604        84 -VYVATPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHG  142 (367)
T ss_pred             -EEEeCCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecc
Confidence             444444443334454321     11  1 11211     23477899999998766544

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]

Probab=92.96  E-value=0.85  Score=41.23  Aligned_cols=243  Identities=11%  Similarity=0.084  Sum_probs=132.6

Q ss_pred             CCCCEEEEecCCCcEEEEEccCcc----eeeeeccccCCeEEEEEccC--------CcEEEEeeCCCcEEEEeCCcccch
Q 014475           90 SHGTYIAGGGQSGDIYMWEVASGR----LLKKWHAHYRAVTCLVFSED--------GSFLISGSEDGCVRIWSLLTVFEE  157 (424)
Q Consensus        90 ~~~~~l~~~~~dg~v~iwd~~~~~----~~~~~~~~~~~i~~~~~~~~--------~~~l~s~~~dg~i~iwd~~~~~~~  157 (424)
                      |...+++.|..+|.+.+....-..    .-..+....   .-++..+.        .++.+....+....++|.....+.
T Consensus       125 ~gqp~~alglsngqv~v~qp~~s~t~p~pg~~Fp~g~---~p~aLd~qgr~leh~~~~lalA~~~~~qf~~~~~t~~~~~  201 (733)
T COG4590         125 PGQPWFALGLSNGQVAVVQPQLSHTMPTPGREFPPGL---EPLALDEQGRLLEHPLQQLALALTAEAQFATYDNTQQIQI  201 (733)
T ss_pred             CCCceEEEeccCCeEEEEeccccccCCCCCccCCCCC---CccccCcccCcccchHHHhhhccchhhHHHHhhhhhhhhh
Confidence            356688999999999998753211    111111111   11222222        223444555555556655432222


Q ss_pred             hcccc-cccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeee-eec--Cc----cee-EEEECC
Q 014475          158 CESQR-ASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRN-IVF--PS----VID-AIALDP  228 (424)
Q Consensus       158 ~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~-~~~--~~----~i~-~~~~~~  228 (424)
                      ...+. .....+..+......+..+-..|++  +.+..-+. ..+.++++.+...... +..  ++    .|+ .+..-.
T Consensus       202 L~g~~t~q~e~i~~L~~~~~~v~qllL~Pdg--~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~  278 (733)
T COG4590         202 LRGDRTTQQEIIRLLSVPFSDVSQLLLTPDG--KTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLS  278 (733)
T ss_pred             hhcccCchhhhhhhcCCCccchHhhEECCCC--CEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHh
Confidence            11111 1111222344455677788888998  66655554 6788888876543221 111  11    122 122233


Q ss_pred             CCCEEEEEeCCCcEEEE-EcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCCCcEEEEE
Q 014475          229 AEHVFYAGSRDGSIYIA-ALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMF  306 (424)
Q Consensus       229 ~~~~l~~~~~dg~i~i~-d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~~~~~  306 (424)
                      .|.-+++++.||-|..| |.+.....    ....+..++-...++..+.-.. .+-+++-+..|++.++.....+.+-.-
T Consensus       279 Gg~SLLv~~~dG~vsQWFdvr~~~~p----~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~  354 (733)
T COG4590         279 GGFSLLVVHEDGLVSQWFDVRRDGQP----HLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFE  354 (733)
T ss_pred             CceeEEEEcCCCceeeeeeeecCCCC----cceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcceehh
Confidence            56678889999988876 44443211    1122333333334454444333 567788888999998875554443322


Q ss_pred             eccCCCeeEEEEEecCceeeeccCCCceeeccCCCCCC
Q 014475          307 RLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGSQL  344 (424)
Q Consensus       307 ~~~~~~v~~l~~s~~~~~l~~~~~d~~i~iw~~~~~~~  344 (424)
                      . .-.....+++||.+.+|++- +.|.++++.+++..+
T Consensus       355 ~-~~~~~~~~~~Sp~~~~Ll~e-~~gki~~~~l~Nr~P  390 (733)
T COG4590         355 R-AYQAPQLVAMSPNQAYLLSE-DQGKIRLAQLENRNP  390 (733)
T ss_pred             h-hhcCcceeeeCcccchheee-cCCceEEEEecCCCC
Confidence            2 22367788999999999875 456788888776544

>PLN02193 nitrile-specifier protein

Probab=92.94  E-value=8.6  Score=36.47  Aligned_cols=104  Identities=10%  Similarity=0.021  Sum_probs=52.1

Q ss_pred             eEEEEEeCCC-----cEEEEecCCCceeeeee-----cCcceeEEEECCCCCEEEEEeCC----CcEEEEEcCCCCCCCC
Q 014475          190 ATIVSASEDR-----TCKVWSLLKGRLLRNIV-----FPSVIDAIALDPAEHVFYAGSRD----GSIYIAALNAESPSTS  255 (424)
Q Consensus       190 ~~l~~~~~d~-----~v~iwd~~~~~~~~~~~-----~~~~i~~~~~~~~~~~l~~~~~d----g~i~i~d~~~~~~~~~  255 (424)
                      ++.+.|+.++     .+..||+.+.+-...-.     ....-..++. -+++.++.++.+    ..+.+||+.+..    
T Consensus       280 ~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~~~~~-~~gkiyviGG~~g~~~~dv~~yD~~t~~----  354 (470)
T PLN02193        280 NVYVFGGVSATARLKTLDSYNIVDKKWFHCSTPGDSFSIRGGAGLEV-VQGKVWVVYGFNGCEVDDVHYYDPVQDK----  354 (470)
T ss_pred             EEEEECCCCCCCCcceEEEEECCCCEEEeCCCCCCCCCCCCCcEEEE-ECCcEEEEECCCCCccCceEEEECCCCE----
Confidence            6677776543     46778877654322111     0011111222 256677777655    468899988764    


Q ss_pred             CcCceeeeeecc--cCcCeEEEEecCCCEEEEeCCC--------------CcEEEEeCCCCc
Q 014475          256 SYGMHIIGSLSD--HSKAVTCLAYSTGDLLISGSED--------------GMVRVWDPITHN  301 (424)
Q Consensus       256 ~~~~~~~~~~~~--~~~~i~~~~~~~~~~l~t~~~d--------------g~i~iwd~~~~~  301 (424)
                         +..+.....  ......+++...+++++.|+..              ..+.++|+.+.+
T Consensus       355 ---W~~~~~~g~~P~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~t~~  413 (470)
T PLN02193        355 ---WTQVETFGVRPSERSVFASAAVGKHIVIFGGEIAMDPLAHVGPGQLTDGTFALDTETLQ  413 (470)
T ss_pred             ---EEEeccCCCCCCCcceeEEEEECCEEEEECCccCCccccccCccceeccEEEEEcCcCE
Confidence               232222100  0111122222236777788753              247788887654

>PLN02153 epithiospecifier protein

Probab=92.66  E-value=7.4  Score=35.05  Aligned_cols=61  Identities=13%  Similarity=0.166  Sum_probs=30.9

Q ss_pred             CCCEEEEecCC-------CcEEEEEccCcceeeeecc---ccC---CeEEEEEccCCcEEEEeeCC-----CcEEEEeCC
Q 014475           91 HGTYIAGGGQS-------GDIYMWEVASGRLLKKWHA---HYR---AVTCLVFSEDGSFLISGSED-----GCVRIWSLL  152 (424)
Q Consensus        91 ~~~~l~~~~~d-------g~v~iwd~~~~~~~~~~~~---~~~---~i~~~~~~~~~~~l~s~~~d-----g~i~iwd~~  152 (424)
                      ++.+++.|+.+       ..+.+||+.+.+-...-..   ...   ....+.+  +++.++.|+.+     ..+.+||+.
T Consensus        32 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~  109 (341)
T PLN02153         32 GDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAV--GTKLYIFGGRDEKREFSDFYSYDTV  109 (341)
T ss_pred             CCEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCCccCceEEEEE--CCEEEEECCCCCCCccCcEEEEECC
Confidence            35566666652       2578888876543221110   010   1122222  46677777753     246778875


Q ss_pred             c
Q 014475          153 T  153 (424)
Q Consensus       153 ~  153 (424)
                      +
T Consensus       110 t  110 (341)
T PLN02153        110 K  110 (341)
T ss_pred             C
Confidence            4

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=92.63  E-value=3.3  Score=30.92  Aligned_cols=101  Identities=13%  Similarity=0.167  Sum_probs=65.5

Q ss_pred             eEEEEEeCCCcEEEEecCC--------CceeeeeecCcceeEEEECC-----CCCEEEEEeCCCcEEEEEcCCCCCCCCC
Q 014475          190 ATIVSASEDRTCKVWSLLK--------GRLLRNIVFPSVIDAIALDP-----AEHVFYAGSRDGSIYIAALNAESPSTSS  256 (424)
Q Consensus       190 ~~l~~~~~d~~v~iwd~~~--------~~~~~~~~~~~~i~~~~~~~-----~~~~l~~~~~dg~i~i~d~~~~~~~~~~  256 (424)
                      .-|++++..|.|.|++...        ...+..+.....|++++-.|     ....|+.|+ ...+..||+..+...   
T Consensus        11 pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt-~t~llaYDV~~N~d~---   86 (136)
T PF14781_consen   11 PCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYDVENNSDL---   86 (136)
T ss_pred             eeEEEEecCCEEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEec-cceEEEEEcccCchh---
Confidence            5678888889999998763        33556677788888887544     345666666 457999999886421   


Q ss_pred             cCceeeeeecccCcCeEEEEecC-----CCEEEEeCCCCcEEEEeCCCCcE
Q 014475          257 YGMHIIGSLSDHSKAVTCLAYST-----GDLLISGSEDGMVRVWDPITHNI  302 (424)
Q Consensus       257 ~~~~~~~~~~~~~~~i~~~~~~~-----~~~l~t~~~dg~i~iwd~~~~~~  302 (424)
                             ..+.-...|+++.+-.     ..+++.| .+..|.-||..-.+.
T Consensus        87 -------Fyke~~DGvn~i~~g~~~~~~~~l~ivG-Gncsi~Gfd~~G~e~  129 (136)
T PF14781_consen   87 -------FYKEVPDGVNAIVIGKLGDIPSPLVIVG-GNCSIQGFDYEGNEI  129 (136)
T ss_pred             -------hhhhCccceeEEEEEecCCCCCcEEEEC-ceEEEEEeCCCCcEE
Confidence                   2223346677776633     3445554 467788787553333

>PRK14131 N-acetylneuraminic acid mutarotase; Provisional

Probab=92.63  E-value=8.1  Score=35.39  Aligned_cols=95  Identities=13%  Similarity=0.102  Sum_probs=43.0

Q ss_pred             EEEeecCCCCCceEEEeCCCC-ceEEEeeCCCCCCCceEEecceeecCCCccccCCCCc----------eeEEEEECCCC
Q 014475            3 LLIASSSVADTGIGCWDLESG-AEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASS----------GSILYWSWSKP   71 (424)
Q Consensus         3 ~~lat~~~~dg~i~vwd~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~----------g~i~vwd~~~~   71 (424)
                      ++++.|. .+..+.++|+... ..-..+.........-.++   ...+++..+.+|...          ..+..||..+.
T Consensus        41 iyv~gG~-~~~~~~~~d~~~~~~~W~~l~~~p~~~r~~~~~---v~~~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n  116 (376)
T PRK14131         41 VYVGLGS-AGTSWYKLDLNAPSKGWTKIAAFPGGPREQAVA---AFIDGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTN  116 (376)
T ss_pred             EEEEeCC-CCCeEEEEECCCCCCCeEECCcCCCCCcccceE---EEECCEEEEEcCCCCCCCCCceeEcccEEEEeCCCC
Confidence            4555555 5666778887532 1122222211111111111   234566777766431          24667787665


Q ss_pred             ceeeeec-CCCCee-EEEEC-CCCCEEEEecCC
Q 014475           72 QVEVKSL-PAEPIK-PIAAN-SHGTYIAGGGQS  101 (424)
Q Consensus        72 ~~~~~~~-~~~~v~-~~~~s-~~~~~l~~~~~d  101 (424)
                      +...... ...... ..+.. -++++.+.|+.+
T Consensus       117 ~W~~~~~~~p~~~~~~~~~~~~~~~IYv~GG~~  149 (376)
T PRK14131        117 SWQKLDTRSPVGLAGHVAVSLHNGKAYITGGVN  149 (376)
T ss_pred             EEEeCCCCCCCcccceEEEEeeCCEEEEECCCC
Confidence            4332221 111111 11222 467778887754

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=92.21  E-value=6.6  Score=33.38  Aligned_cols=243  Identities=12%  Similarity=0.025  Sum_probs=147.2

Q ss_pred             CCCCeeEEEECCCCCEEEEecCCCcEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchh
Q 014475           79 PAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEEC  158 (424)
Q Consensus        79 ~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~  158 (424)
                      ....-..++-.|||..-.++...+.|--.|..+|+....--+.......|..-||+..-++-+.. -|.-.|.++...  
T Consensus        60 ~G~ap~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~ev--  136 (353)
T COG4257          60 NGSAPFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEV--  136 (353)
T ss_pred             CCCCccccccCCCCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccce--
Confidence            34566788889999999998888889889999998776655566667788888988776664433 444455533210  


Q ss_pred             cccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeee--cCcceeEEEECCCCCEEEEE
Q 014475          159 ESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV--FPSVIDAIALDPAEHVFYAG  236 (424)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~  236 (424)
                            .......+.-........|.+.+  ++-+++.. |.---.|..+ ..+..+.  .......+|..|+|...++.
T Consensus       137 ------t~f~lp~~~a~~nlet~vfD~~G--~lWFt~q~-G~yGrLdPa~-~~i~vfpaPqG~gpyGi~atpdGsvwyas  206 (353)
T COG4257         137 ------TRFPLPLEHADANLETAVFDPWG--NLWFTGQI-GAYGRLDPAR-NVISVFPAPQGGGPYGICATPDGSVWYAS  206 (353)
T ss_pred             ------EEeecccccCCCcccceeeCCCc--cEEEeecc-ccceecCccc-CceeeeccCCCCCCcceEECCCCcEEEEe
Confidence                  00111122234556667777776  55555542 2211222211 1223332  34567789999999998888


Q ss_pred             eCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCCCcEEEE--EeccCCCe
Q 014475          237 SRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRM--FRLAKGPV  313 (424)
Q Consensus       237 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~~~~--~~~~~~~v  313 (424)
                      -.++.|-..|......       +.+..-......-..+-.+| ++.-+|....+.+..+|..+.. -.+  +.+.+..-
T Consensus       207 lagnaiaridp~~~~a-------ev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~s-W~eypLPgs~arp  278 (353)
T COG4257         207 LAGNAIARIDPFAGHA-------EVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVTS-WIEYPLPGSKARP  278 (353)
T ss_pred             ccccceEEcccccCCc-------ceecCCCcccccccccccCccCcEEEeccCCceeeEeCccccc-ceeeeCCCCCCCc
Confidence            7788888777766531       11111122122334444456 8888887788889999877544 333  33333455


Q ss_pred             eEEEEEecCceeeeccCCCceeeccCCCC
Q 014475          314 NNILVVRRPLYLNLGSFSNPHTSSRRHGS  342 (424)
Q Consensus       314 ~~l~~s~~~~~l~~~~~d~~i~iw~~~~~  342 (424)
                      .++.....++.-++--..|.|.-+|.++.
T Consensus       279 ys~rVD~~grVW~sea~agai~rfdpeta  307 (353)
T COG4257         279 YSMRVDRHGRVWLSEADAGAIGRFDPETA  307 (353)
T ss_pred             ceeeeccCCcEEeeccccCceeecCcccc
Confidence            66667766766665555566666665543

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=92.03  E-value=0.74  Score=38.29  Aligned_cols=65  Identities=18%  Similarity=0.273  Sum_probs=47.0

Q ss_pred             eecCCCccccCCCCceeEEEEECCCCceeeee---------------cCCCCeeEEEECCCCCEEEEecCCCcEEEEEcc
Q 014475           46 FLASSQLREQPSASSGSILYWSWSKPQVEVKS---------------LPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVA  110 (424)
Q Consensus        46 ~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~~---------------~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~  110 (424)
                      +...++++++...+ |.+++||+.+.+.....               .....|..+.++.+|.-+++-+ +|..+.|+..
T Consensus        18 l~~~~~~Ll~iT~~-G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~   95 (219)
T PF07569_consen   18 LECNGSYLLAITSS-GLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPD   95 (219)
T ss_pred             EEeCCCEEEEEeCC-CeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEeccc
Confidence            45678888888887 99999999987755433               2345778888888887766644 5778888764


Q ss_pred             Cc
Q 014475          111 SG  112 (424)
Q Consensus       111 ~~  112 (424)
                      -+
T Consensus        96 L~   97 (219)
T PF07569_consen   96 LG   97 (219)
T ss_pred             cc
Confidence            33

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=91.80  E-value=6.2  Score=32.27  Aligned_cols=101  Identities=6%  Similarity=0.090  Sum_probs=60.7

Q ss_pred             CccccCCCCceeEEEEECCCCc--eeeeecCCCCeeEEEECCCCCEEEEecCC---C---cEEEE---Ecc--Ccceee-
Q 014475           51 QLREQPSASSGSILYWSWSKPQ--VEVKSLPAEPIKPIAANSHGTYIAGGGQS---G---DIYMW---EVA--SGRLLK-  116 (424)
Q Consensus        51 ~~l~~~~~~~g~i~vwd~~~~~--~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---g---~v~iw---d~~--~~~~~~-  116 (424)
                      +.|+.+... +.|.+|++....  .......-+.|..+.++..|++|++--.+   .   .+++|   +..  ....+. 
T Consensus        29 d~Lfva~~g-~~Vev~~l~~~~~~~~~~F~Tv~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~v  107 (215)
T PF14761_consen   29 DALFVAASG-CKVEVYDLEQEECPLLCTFSTVGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRV  107 (215)
T ss_pred             ceEEEEcCC-CEEEEEEcccCCCceeEEEcchhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEE
Confidence            444343333 789999998443  33445566899999999999999986322   2   45665   221  111111 


Q ss_pred             eecc---------------------ccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCc
Q 014475          117 KWHA---------------------HYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLT  153 (424)
Q Consensus       117 ~~~~---------------------~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~  153 (424)
                      .+-+                     -..++.+++-.|-..-|+.|+. +.+.+|.+..
T Consensus       108 RiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~~-~~l~lf~l~~  164 (215)
T PF14761_consen  108 RIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGCG-NKLVLFTLKY  164 (215)
T ss_pred             EEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEcC-CEEEEEEEEE
Confidence            1111                     1346778888884334555554 4899998854

>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=91.45  E-value=2.9  Score=43.24  Aligned_cols=163  Identities=13%  Similarity=0.148  Sum_probs=95.1

Q ss_pred             CCCCeeEEEECCC-CCEEEEecCCCcEEEEEccCcceeeeeccccCCeEEEEEc--------cCCcEEEEeeCCCcEEEE
Q 014475           79 PAEPIKPIAANSH-GTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFS--------EDGSFLISGSEDGCVRIW  149 (424)
Q Consensus        79 ~~~~v~~~~~s~~-~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~--------~~~~~l~s~~~dg~i~iw  149 (424)
                      +...-..+-+-|. ++.-++  -|+.+.+|+.+++.....+.+-...|..+..-        |.=++++.-+.--.|.++
T Consensus        77 ~~~~~~~mGiFpeI~RaWiT--iDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~il  154 (1311)
T KOG1900|consen   77 NIECKTDMGIFPEIGRAWIT--IDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVIL  154 (1311)
T ss_pred             CcceeeeeccchhhcceEEE--eCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEE
Confidence            3333344445554 333333  47789999999988888887777777776642        233444444445567777


Q ss_pred             eCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecC----CC---c-e----------
Q 014475          150 SLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLL----KG---R-L----------  211 (424)
Q Consensus       150 d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~----~~---~-~----------  211 (424)
                      -+.-.........-.  ....+......|+++....+|  + ++-++.||  .+|.+.    .+   + +          
T Consensus       155 gV~~~~~~~~~~~f~--~~~~i~~dg~~V~~I~~t~nG--R-IF~~G~dg--~lyEl~Yq~~~gWf~~rc~Kiclt~s~l  227 (1311)
T KOG1900|consen  155 GVSFDEFTGELSIFN--TSFKISVDGVSVNCITYTENG--R-IFFAGRDG--NLYELVYQAEDGWFGSRCRKICLTKSVL  227 (1311)
T ss_pred             EEEeccccCcccccc--cceeeecCCceEEEEEeccCC--c-EEEeecCC--CEEEEEEeccCchhhcccccccCchhHH
Confidence            553221111100000  012223345667788755555  4 45555566  444431    10   1 0          


Q ss_pred             -------eeee-ecCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCC
Q 014475          212 -------LRNI-VFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAE  250 (424)
Q Consensus       212 -------~~~~-~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  250 (424)
                             .... .+..+|..+++......+++-+..|.|.+|++...
T Consensus       228 s~lvPs~~~~~~~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~~  274 (1311)
T KOG1900|consen  228 SSLVPSLLSVPGSSKDPIRQITIDNSRNILYVLSEKGTVSAYDIGGN  274 (1311)
T ss_pred             HHhhhhhhcCCCCCCCcceeeEeccccceeeeeccCceEEEEEccCC
Confidence                   0111 13568999999999999999999999999999874

>PLN02153 epithiospecifier protein

Probab=91.38  E-value=11  Score=34.07  Aligned_cols=95  Identities=14%  Similarity=0.164  Sum_probs=46.6

Q ss_pred             ceEEEeCCCCceEEEeeCCC-CCC-C--ceEEecceeecCCCccccCCCCc----eeEEEEECCCCceeeeec------C
Q 014475           14 GIGCWDLESGAEQLRYKSCA-SPP-H--GLACVGQRFLASSQLREQPSASS----GSILYWSWSKPQVEVKSL------P   79 (424)
Q Consensus        14 ~i~vwd~~~~~~~~~~~~~~-~~~-~--~v~~~~~~~~~~~~~l~~~~~~~----g~i~vwd~~~~~~~~~~~------~   79 (424)
                      .+.++|..+.+-.. ..... .+. .  ...+    ..-+++.++.+|.++    ..+.++|..+.+-.....      +
T Consensus        51 ~~~~yd~~~~~W~~-~~~~~~~p~~~~~~~~~----~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p  125 (341)
T PLN02153         51 DLYVFDFNTHTWSI-APANGDVPRISCLGVRM----VAVGTKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGP  125 (341)
T ss_pred             cEEEEECCCCEEEE-cCccCCCCCCccCceEE----EEECCEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCC
Confidence            57888888765432 22111 111 1  1111    223566667776532    257788877654332211      1


Q ss_pred             CCCeeEEEECCCCCEEEEecCC-----------CcEEEEEccCcc
Q 014475           80 AEPIKPIAANSHGTYIAGGGQS-----------GDIYMWEVASGR  113 (424)
Q Consensus        80 ~~~v~~~~~s~~~~~l~~~~~d-----------g~v~iwd~~~~~  113 (424)
                      .......+..-++++.+.|+.+           ..+.+||+++.+
T Consensus       126 ~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~  170 (341)
T PLN02153        126 EARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGK  170 (341)
T ss_pred             CCceeeEEEEECCEEEEECCccCCCccCCCcccceEEEEECCCCe
Confidence            1111212222356677777653           247788887654

>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins

Probab=91.31  E-value=13  Score=34.79  Aligned_cols=31  Identities=26%  Similarity=0.398  Sum_probs=24.7

Q ss_pred             cCeEEEEecC-CCEEEEeCCCCcEEEEeCCCC
Q 014475          270 KAVTCLAYST-GDLLISGSEDGMVRVWDPITH  300 (424)
Q Consensus       270 ~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~  300 (424)
                      ..|.+++..+ .+.+++...+|.|.+|++..+
T Consensus       190 ~~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~~  221 (422)
T PF08801_consen  190 PKIVQVAVDPSRRLLYTLTSDGSIQVWDLGPG  221 (422)
T ss_dssp             --EEEEEEETTTTEEEEEESSE-EEEEEE-SS
T ss_pred             hceeeEEecCCcCEEEEEeCCCcEEEEEEeCC
Confidence            4499999999 889999999999999999853

RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.

>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2

Probab=91.18  E-value=10  Score=33.49  Aligned_cols=243  Identities=13%  Similarity=0.110  Sum_probs=116.5

Q ss_pred             CCCEEEEecCCCcEEEEEccC--cceeeeeccccCCeEEEEEccCCcEEEEee-CCCcEEEEeCCcccchhcc-----cc
Q 014475           91 HGTYIAGGGQSGDIYMWEVAS--GRLLKKWHAHYRAVTCLVFSEDGSFLISGS-EDGCVRIWSLLTVFEECES-----QR  162 (424)
Q Consensus        91 ~~~~l~~~~~dg~v~iwd~~~--~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~-----~~  162 (424)
                      ++++|+.|+++| +.+.++..  ++..+.+  +...|+++...+..+.|++-+ ....++.+++.........     ..
T Consensus        12 ~~~~lL~GTe~G-ly~~~~~~~~~~~~kl~--~~~~v~q~~v~~~~~lLi~Lsgk~~~L~~~~L~~L~~~~~~~~~~~~~   88 (302)
T smart00036       12 DGKWLLVGTEEG-LYVLNISDQPGTLEKLI--GRRSVTQIWVLEENNVLLMISGKKPQLYSHPLSALVEKKEALGSARLV   88 (302)
T ss_pred             CCcEEEEEeCCc-eEEEEcccCCCCeEEec--CcCceEEEEEEhhhCEEEEEeCCcceEEEEEHHHhhhhhhccCCcccc
Confidence            336899999998 55555554  2333332  456899999998777665544 3445999999654421100     00


Q ss_pred             cccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCC----ceeeee-----ecCcceeEEEECCC--CC
Q 014475          163 ASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKG----RLLRNI-----VFPSVIDAIALDPA--EH  231 (424)
Q Consensus       163 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~----~~~~~~-----~~~~~i~~~~~~~~--~~  231 (424)
                      .... ....-.+.....-..+.... ...++++....+|.++.....    ...+.+     ..+.++..+..+++  ..
T Consensus        89 ~~~~-~~~~~~~tkGc~~~~v~~~~-~~~~l~~A~~~~i~l~~~~~~~~~f~~~k~~~~~~~~~~~~~~~~~~~~~~~~~  166 (302)
T smart00036       89 IRKN-VLTKIPDTKGCHLCAVVNGK-RSLFLCVALQSSVVLLQWYNPLKKFKLFKSKFLFPLISPVPVFVELVSSSFERP  166 (302)
T ss_pred             cccc-ceEeCCcCCceEEEEEEcCC-CcEEEEEEcCCeEEEEEccChhhhhhhhcccccccCCCCccceEeeecccccce
Confidence            0011 11122333333333333322 234455555667777643321    112211     12233444444443  56


Q ss_pred             EEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccC-cCeEEEEecCCCEEEEeCCCCcEEEEeCCCC-cEEE--EEe
Q 014475          232 VFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHS-KAVTCLAYSTGDLLISGSEDGMVRVWDPITH-NIVR--MFR  307 (424)
Q Consensus       232 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~l~t~~~dg~i~iwd~~~~-~~~~--~~~  307 (424)
                      .+.+|+..+...++++..........  ..-....... .++.......+.+|++-. + ...+-|.. | +..+  .+.
T Consensus       167 ~lcvG~~~~~~~~~~~~~~~~~~~d~--sl~~~~~~~~~~p~~i~~l~~~e~Llc~~-~-~~v~Vn~~-G~~~~r~~~l~  241 (302)
T smart00036      167 GICIGSDKGGGDVVQFHESLVSKEDL--SLPFLSEETSLKPISVVQVPRDEFLLCYD-E-FGVFVNLY-GKRRSRNPILH  241 (302)
T ss_pred             EEEEEEcCCCCeEEEEeecccccccc--cccccccccccCceEEEEECCCeEEEEEC-c-EEEEEeCC-CCccccceEEE
Confidence            78888775345555554310000000  0000011111 344444444455555443 2 23444433 3 2211  222


Q ss_pred             ccCCCeeEEEEEecCceeeeccCCCceeeccCCCCCCCCC
Q 014475          308 LAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGSQLPPP  347 (424)
Q Consensus       308 ~~~~~v~~l~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~  347 (424)
                       -.+...++++..  .+|++-+ +..|.++++.++++.+.
T Consensus       242 -w~~~p~~~~~~~--pyll~~~-~~~ievr~l~~~~l~q~  277 (302)
T smart00036      242 -WEFMPESFAYHS--PYLLAFH-DNGIEIRSIKTGELLQE  277 (302)
T ss_pred             -cCCcccEEEEEC--CEEEEEc-CCcEEEEECCCCceEEE
Confidence             234556677663  5666655 45599999998865443

Unpublished observations.

>COG1520 FOG: WD40-like repeat [Function unknown]

Probab=90.98  E-value=12  Score=34.11  Aligned_cols=200  Identities=17%  Similarity=0.158  Sum_probs=103.3

Q ss_pred             CCCEEEEecCCCcEEEEEccCcceeeeeccc--cCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceE
Q 014475           91 HGTYIAGGGQSGDIYMWEVASGRLLKKWHAH--YRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYL  168 (424)
Q Consensus        91 ~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~--~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~  168 (424)
                      +++ +.++..+|.|.-.|.+++..+.....-  ...+..-.+..+|+ ++.++.+|.+..+|.+++....         .
T Consensus        68 dg~-v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~-i~~g~~~g~~y~ld~~~G~~~W---------~  136 (370)
T COG1520          68 DGT-VYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGK-IYVGSWDGKLYALDASTGTLVW---------S  136 (370)
T ss_pred             CCe-EEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCe-EEEecccceEEEEECCCCcEEE---------E
Confidence            454 444577888888888888765433222  12222222333565 7778888888888886543221         1


Q ss_pred             EeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeeecCcc-eeEEEEC--CCCCEEEEEeC--CCcEE
Q 014475          169 HSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSV-IDAIALD--PAEHVFYAGSR--DGSIY  243 (424)
Q Consensus       169 ~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~-i~~~~~~--~~~~~l~~~~~--dg~i~  243 (424)
                      ...... ..+..-..-.+   ..+..++.++.+...|..+++.......... -......  .....++.+..  ++.+.
T Consensus       137 ~~~~~~-~~~~~~~v~~~---~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~vy~~~~~~~~~~~  212 (370)
T COG1520         137 RNVGGS-PYYASPPVVGD---GTVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIASGTVYVGSDGYDGILY  212 (370)
T ss_pred             EecCCC-eEEecCcEEcC---cEEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCceeecceEEEecCCCcceEE
Confidence            111110 11111112222   3444555778888888888888776554321 1111111  13344555554  55666


Q ss_pred             EEEcCCCCCCCCCcCceeeeeecccCcC--eEEEEecC---CCEEEEeCCCCcEEEEeCCCCcEEEEEecc
Q 014475          244 IAALNAESPSTSSYGMHIIGSLSDHSKA--VTCLAYST---GDLLISGSEDGMVRVWDPITHNIVRMFRLA  309 (424)
Q Consensus       244 i~d~~~~~~~~~~~~~~~~~~~~~~~~~--i~~~~~~~---~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~  309 (424)
                      -.|..++.......    .....+....  ...+...+   +.-+..++.++.+...|..+++.+-.+...
T Consensus       213 a~~~~~G~~~w~~~----~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~~~l~~~~G~~~W~~~~~  279 (370)
T COG1520         213 ALNAEDGTLKWSQK----VSQTIGRTAISTTPAVDGGPVYVDGGVYAGSYGGKLLCLDADTGELIWSFPAG  279 (370)
T ss_pred             EEEccCCcEeeeee----eecccCcccccccccccCceEEECCcEEEEecCCeEEEEEcCCCceEEEEecc
Confidence            66666654221100    0001111100  01111111   344466677888999999999999888754

>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein

Probab=90.82  E-value=12  Score=33.51  Aligned_cols=62  Identities=6%  Similarity=0.109  Sum_probs=33.7

Q ss_pred             eEEEEEeC-----CCcEEEEecCCCceeee--eecCcceeEEEECCCCCEEEEEeCCC----cEEEEEcCCCC
Q 014475          190 ATIVSASE-----DRTCKVWSLLKGRLLRN--IVFPSVIDAIALDPAEHVFYAGSRDG----SIYIAALNAES  251 (424)
Q Consensus       190 ~~l~~~~~-----d~~v~iwd~~~~~~~~~--~~~~~~i~~~~~~~~~~~l~~~~~dg----~i~i~d~~~~~  251 (424)
                      ...+.|+.     ...+..||+.+.+-...  +.........+...++++++.|+.++    .+..||..+..
T Consensus       125 ~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~  197 (323)
T TIGR03548       125 TLYVGGGNRNGKPSNKSYLFNLETQEWFELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQ  197 (323)
T ss_pred             EEEEEeCcCCCccCceEEEEcCCCCCeeECCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCe
Confidence            56666664     23588888876543322  11111222222334667777777654    35678877653

Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=90.74  E-value=10  Score=32.85  Aligned_cols=218  Identities=14%  Similarity=0.110  Sum_probs=120.2

Q ss_pred             CCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecC-----CcCceeEEEEEEcC----------
Q 014475          123 RAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTG-----HTLRITDIVIGYGG----------  187 (424)
Q Consensus       123 ~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-----~~~~i~~~~~~~~~----------  187 (424)
                      ..-+.|+++|.+.+-++....+...+||........    .....+..+..     .....+.+.|+...          
T Consensus        23 ~N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g----~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~   98 (336)
T TIGR03118        23 RNAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPL----VQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGIT   98 (336)
T ss_pred             cccceeEecCCCCEEEecCCcceEEeecCCcccccC----CccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcc
Confidence            345789999988888887778899999986211100    11112222221     23456666665322          


Q ss_pred             ceeEEEEEeCCCcEEEEecCCCce-----eeeee---cCcceeEEEECC--CCCEEEEE-eCCCcEEEEEcCCCCCCCC-
Q 014475          188 VSATIVSASEDRTCKVWSLLKGRL-----LRNIV---FPSVIDAIALDP--AEHVFYAG-SRDGSIYIAALNAESPSTS-  255 (424)
Q Consensus       188 ~~~~l~~~~~d~~v~iwd~~~~~~-----~~~~~---~~~~i~~~~~~~--~~~~l~~~-~~dg~i~i~d~~~~~~~~~-  255 (424)
                      ....++.+++||+|.-|...-...     ...+.   .......+++..  .+.+|+.+ -..++|.+||-.-...... 
T Consensus        99 ~~a~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g  178 (336)
T TIGR03118        99 GPSRFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPG  178 (336)
T ss_pred             cceeEEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCC
Confidence            013478889999999998543222     11111   122234455543  35555554 4678999998765432110 


Q ss_pred             -C--------cCceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCCCcEEEEEec--cCCCeeEEEEEe---
Q 014475          256 -S--------YGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRL--AKGPVNNILVVR---  320 (424)
Q Consensus       256 -~--------~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~~~~~~~--~~~~v~~l~~s~---  320 (424)
                       .        +..--++.+ +..-.|+-..-.+ .+.=+.|-.-|.|-+||+. |+.++++..  .-..-+.|+..|   
T Consensus       179 ~F~DP~iPagyAPFnIqni-g~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~-G~l~~r~as~g~LNaPWG~a~APa~F  256 (336)
T TIGR03118       179 SFIDPALPAGYAPFNVQNL-GGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLN-GQLLRRVASSGRLNAPWGLAIAPESF  256 (336)
T ss_pred             CccCCCCCCCCCCcceEEE-CCeEEEEEEecCCcccccccCCCcceEEEEcCC-CcEEEEeccCCcccCCceeeeChhhh
Confidence             0        000000111 0111122222222 2233344456789999965 888888852  223446677755   


Q ss_pred             ---cCceeeeccCCCceeeccCCCCCCCC
Q 014475          321 ---RPLYLNLGSFSNPHTSSRRHGSQLPP  346 (424)
Q Consensus       321 ---~~~~l~~~~~d~~i~iw~~~~~~~~~  346 (424)
                         .+..|+----||+|..+|..+++..-
T Consensus       257 G~~sg~lLVGNFGDG~InaFD~~sG~~~g  285 (336)
T TIGR03118       257 GSLSGALLVGNFGDGTINAYDPQSGAQLG  285 (336)
T ss_pred             CCCCCCeEEeecCCceeEEecCCCCceee
Confidence               45677766679999999988765443

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=90.41  E-value=13  Score=36.28  Aligned_cols=70  Identities=21%  Similarity=0.322  Sum_probs=49.2

Q ss_pred             CCCCeeEEEECCCCCEEEEecCCCcEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeC
Q 014475           79 PAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSL  151 (424)
Q Consensus        79 ~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~  151 (424)
                      ....++++.-+|.++.++.+..||.|.+|+......-+.. ....+-..+.|...|  |+++..|..+.-|.-
T Consensus        13 ~~e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~qski~-~~~~p~~nlv~tnhg--l~~~tsdrr~la~~~   82 (1636)
T KOG3616|consen   13 EDEFTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQSKIC-EEAKPKENLVFTNHG--LVTATSDRRALAWKE   82 (1636)
T ss_pred             ccceeeeeeecCCCceEEEEecCCcEEEEeecccchhhhh-hhcCCccceeeeccc--eEEEeccchhheeec
Confidence            3456788888999999999999999999998655432211 122344556676444  677777888888864

>PF12768 Rax2: Cortical protein marker for cell polarity

Probab=90.21  E-value=6.9  Score=33.92  Aligned_cols=102  Identities=9%  Similarity=0.061  Sum_probs=60.2

Q ss_pred             CcEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEee------CCCcEEEEeCCcccchhcccccccceEEe-e-cC
Q 014475          102 GDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGS------EDGCVRIWSLLTVFEECESQRASHLYLHS-F-TG  173 (424)
Q Consensus       102 g~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~-~-~~  173 (424)
                      ..|++||..+.+-...-.+-.+.|+.+.|..+.++++.|.      ....+..||..+.         ....... . ..
T Consensus        16 ~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~---------~w~~~~~~~s~~   86 (281)
T PF12768_consen   16 PGLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQ---------TWSSLGGGSSNS   86 (281)
T ss_pred             CEEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCC---------eeeecCCccccc
Confidence            4599999877765555455668899999987777776664      3556888998551         1111111 0 12


Q ss_pred             CcCceeEEEEEEcCceeEEEEEe-C--CCcEEEEecCCCcee
Q 014475          174 HTLRITDIVIGYGGVSATIVSAS-E--DRTCKVWSLLKGRLL  212 (424)
Q Consensus       174 ~~~~i~~~~~~~~~~~~~l~~~~-~--d~~v~iwd~~~~~~~  212 (424)
                      -.+++..+.+......+..+.|. .  +..|..||=.+...+
T Consensus        87 ipgpv~a~~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~W~~i  128 (281)
T PF12768_consen   87 IPGPVTALTFISNDGSNFWVAGRSANGSTFLMKYDGSSWSSI  128 (281)
T ss_pred             CCCcEEEEEeeccCCceEEEeceecCCCceEEEEcCCceEec
Confidence            24677777775444334554444 2  334666765444333

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=90.18  E-value=9.2  Score=31.34  Aligned_cols=173  Identities=18%  Similarity=0.197  Sum_probs=87.7

Q ss_pred             CEEEEecCCCcEEEEEccC--cceeeeeccccCCeEEEEEccCCcEEEEeeCCC------cEEEE-eCCcccchhccccc
Q 014475           93 TYIAGGGQSGDIYMWEVAS--GRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDG------CVRIW-SLLTVFEECESQRA  163 (424)
Q Consensus        93 ~~l~~~~~dg~v~iwd~~~--~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg------~i~iw-d~~~~~~~~~~~~~  163 (424)
                      ..|+.+.....|.+|++.+  .+....+.. -+.|..+.++..|++++|--.+.      .+|+| |.+..         
T Consensus        29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~T-v~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~---------   98 (215)
T PF14761_consen   29 DALFVAASGCKVEVYDLEQEECPLLCTFST-VGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQ---------   98 (215)
T ss_pred             ceEEEEcCCCEEEEEEcccCCCceeEEEcc-hhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhh---------
Confidence            3444435567899999983  344555653 37899999999999999875432      34554 22110         


Q ss_pred             ccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeeecCcceeEEEECCCCCEEEEEeCCCcEE
Q 014475          164 SHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIY  243 (424)
Q Consensus       164 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~  243 (424)
                              .....++.. ...  |   .-++++.....     ...-.+-+++...++.+++..|-..-|++|+ ++.+.
T Consensus        99 --------~~~~~~v~v-Ria--G---~~v~~~~~~~~-----~~qleiiElPl~~~p~ciaCC~~tG~LlVg~-~~~l~  158 (215)
T PF14761_consen   99 --------KEENSPVRV-RIA--G---HRVTPSFNESS-----KDQLEIIELPLSEPPLCIACCPVTGNLLVGC-GNKLV  158 (215)
T ss_pred             --------cccCCcEEE-EEc--c---cccccCCCCcc-----ccceEEEEecCCCCCCEEEecCCCCCEEEEc-CCEEE
Confidence                    011122211 110  0   01111111111     1112234445667889999999555566666 45788


Q ss_pred             EEEcCCCCCCCCCcC-ceeeeeecccCc--CeEEEEecCCCEEEEeCCCCcEEEEeC
Q 014475          244 IAALNAESPSTSSYG-MHIIGSLSDHSK--AVTCLAYSTGDLLISGSEDGMVRVWDP  297 (424)
Q Consensus       244 i~d~~~~~~~~~~~~-~~~~~~~~~~~~--~i~~~~~~~~~~l~t~~~dg~i~iwd~  297 (424)
                      +|.+........... ......+-.|..  .+..+++. ++++|..+ +-.+++..+
T Consensus       159 lf~l~~~~~~~~~~~~lDFe~~l~~~~~~~~p~~v~ic-~~yiA~~s-~~ev~Vlkl  213 (215)
T PF14761_consen  159 LFTLKYQTIQSEKFSFLDFERSLIDHIDNFKPTQVAIC-EGYIAVMS-DLEVLVLKL  213 (215)
T ss_pred             EEEEEEEEEecccccEEechhhhhheecCceEEEEEEE-eeEEEEec-CCEEEEEEE
Confidence            888876542111000 000011112222  24445554 67777776 445666554

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=89.84  E-value=14  Score=33.07  Aligned_cols=241  Identities=15%  Similarity=0.112  Sum_probs=110.1

Q ss_pred             EEecceeecCCCccccCCCCceeEEEEECCCCc-eeeee------cCCCCeeEEEECCC----CCEEEEecCC-------
Q 014475           40 ACVGQRFLASSQLREQPSASSGSILYWSWSKPQ-VEVKS------LPAEPIKPIAANSH----GTYIAGGGQS-------  101 (424)
Q Consensus        40 ~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~-~~~~~------~~~~~v~~~~~s~~----~~~l~~~~~d-------  101 (424)
                      ..++  |.|+|+++++- .. |.|.+++.+... .....      ........++++|+    +.+.++.+..       
T Consensus         5 ~~~a--~~pdG~l~v~e-~~-G~i~~~~~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~   80 (331)
T PF07995_consen    5 RSMA--FLPDGRLLVAE-RS-GRIWVVDKDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDN   80 (331)
T ss_dssp             EEEE--EETTSCEEEEE-TT-TEEEEEETTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSE
T ss_pred             eEEE--EeCCCcEEEEe-CC-ceEEEEeCCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCc
Confidence            4566  99998876654 45 999999933332 11111      23567899999994    3333333321       


Q ss_pred             -CcEEEEEccCc-------cee-eeecc---ccCCeEEEEEccCCcEEEEeeCCCc-------------EEEEeCCcccc
Q 014475          102 -GDIYMWEVASG-------RLL-KKWHA---HYRAVTCLVFSEDGSFLISGSEDGC-------------VRIWSLLTVFE  156 (424)
Q Consensus       102 -g~v~iwd~~~~-------~~~-~~~~~---~~~~i~~~~~~~~~~~l~s~~~dg~-------------i~iwd~~~~~~  156 (424)
                       ..|.-|....+       +.+ ..+..   ....-..|.|.||+.+.++.+..+.             |.-.+......
T Consensus        81 ~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~~~~~~~~~~~~G~ilri~~dG~~p  160 (331)
T PF07995_consen   81 DNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGNDDNAQDPNSLRGKILRIDPDGSIP  160 (331)
T ss_dssp             EEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTTGGGGCSTTSSTTEEEEEETTSSB-
T ss_pred             ceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCCcccccccccccceEEEecccCcCC
Confidence             13444444333       111 11121   2234567999999987777665433             22222211000


Q ss_pred             hhccc---ccccceEEeecCCcCceeEEEEEEc-CceeEEEE-EeCCCcEEEEecCCCc---------------------
Q 014475          157 ECESQ---RASHLYLHSFTGHTLRITDIVIGYG-GVSATIVS-ASEDRTCKVWSLLKGR---------------------  210 (424)
Q Consensus       157 ~~~~~---~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~l~~-~~~d~~v~iwd~~~~~---------------------  210 (424)
                      .....   ......+ --.++. ....++|.|. +  .+.++ .+.++.=.|--+..+.                     
T Consensus       161 ~dnP~~~~~~~~~~i-~A~GlR-N~~~~~~d~~tg--~l~~~d~G~~~~dein~i~~G~nYGWP~~~~~~~~~~~~~~~~  236 (331)
T PF07995_consen  161 ADNPFVGDDGADSEI-YAYGLR-NPFGLAFDPNTG--RLWAADNGPDGWDEINRIEPGGNYGWPYCEGGPKYSGPPIGDA  236 (331)
T ss_dssp             TTSTTTTSTTSTTTE-EEE--S-EEEEEEEETTTT--EEEEEEE-SSSSEEEEEE-TT-B--TTTBSSSCSTTSS-ECTG
T ss_pred             CCCccccCCCceEEE-EEeCCC-ccccEEEECCCC--cEEEEccCCCCCcEEEEeccCCcCCCCCCcCCCCCCCCccccc
Confidence            00000   0000001 011222 3356788887 4  33332 2222222222222111                     


Q ss_pred             --------eeeeeecCcceeEEEECC-------CCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEE
Q 014475          211 --------LLRNIVFPSVIDAIALDP-------AEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCL  275 (424)
Q Consensus       211 --------~~~~~~~~~~i~~~~~~~-------~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  275 (424)
                              +...+.+...+..+.|.+       .+.++++....+.|....++.....     ......+......+..+
T Consensus       237 ~~~~~~~~P~~~~~~~~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~-----~~~~~~~~~~~~r~~~v  311 (331)
T PF07995_consen  237 PSCPGFVPPVFAYPPHSAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSV-----TEEEEFLGGFGGRPRDV  311 (331)
T ss_dssp             SS-TTS---SEEETTT--EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEE-----EEEEEECTTSSS-EEEE
T ss_pred             cCCCCcCccceeecCccccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCc-----cceEEccccCCCCceEE
Confidence                    112222334555666543       3455666666678888877644210     01111223444578999


Q ss_pred             EecC-CCEEEEeCCCCcEE
Q 014475          276 AYST-GDLLISGSEDGMVR  293 (424)
Q Consensus       276 ~~~~-~~~l~t~~~dg~i~  293 (424)
                      ++.| |.++++.+.+|.|.
T Consensus       312 ~~~pDG~Lyv~~d~~G~iy  330 (331)
T PF07995_consen  312 AQGPDGALYVSDDSDGKIY  330 (331)
T ss_dssp             EEETTSEEEEEE-TTTTEE
T ss_pred             EEcCCCeEEEEECCCCeEe
Confidence            9999 77777777777763

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2

Probab=89.48  E-value=14  Score=32.55  Aligned_cols=238  Identities=8%  Similarity=0.008  Sum_probs=114.0

Q ss_pred             CCCccccCCCCceeEEEEECCCC-ceeeeecCCCCeeEEEECCCCCEEEEe-cCCCcEEEEEccCccee-----------
Q 014475           49 SSQLREQPSASSGSILYWSWSKP-QVEVKSLPAEPIKPIAANSHGTYIAGG-GQSGDIYMWEVASGRLL-----------  115 (424)
Q Consensus        49 ~~~~l~~~~~~~g~i~vwd~~~~-~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg~v~iwd~~~~~~~-----------  115 (424)
                      ++++++.|..+ |...+. .... ....+..+..+|+++...+.-+.|++- +....++.+++..-...           
T Consensus        12 ~~~~lL~GTe~-Gly~~~-~~~~~~~~~kl~~~~~v~q~~v~~~~~lLi~Lsgk~~~L~~~~L~~L~~~~~~~~~~~~~~   89 (302)
T smart00036       12 DGKWLLVGTEE-GLYVLN-ISDQPGTLEKLIGRRSVTQIWVLEENNVLLMISGKKPQLYSHPLSALVEKKEALGSARLVI   89 (302)
T ss_pred             CCcEEEEEeCC-ceEEEE-cccCCCCeEEecCcCceEEEEEEhhhCEEEEEeCCcceEEEEEHHHhhhhhhccCCccccc
Confidence            33577777775 655544 5443 344556677899999999877766554 33445999998433210           


Q ss_pred             ----eeeccccCCeEEEEEccCC-cEEEEeeCCCcEEEEeCCcccchhcccccccceEEee----cCCcCceeEEEEEEc
Q 014475          116 ----KKWHAHYRAVTCLVFSEDG-SFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSF----TGHTLRITDIVIGYG  186 (424)
Q Consensus       116 ----~~~~~~~~~i~~~~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~----~~~~~~i~~~~~~~~  186 (424)
                          ...-.|............. ..++++....+|.++........       ....+.+    ..-..++..+..+++
T Consensus        90 ~~~~~~~~~~tkGc~~~~v~~~~~~~~l~~A~~~~i~l~~~~~~~~~-------f~~~k~~~~~~~~~~~~~~~~~~~~~  162 (302)
T smart00036       90 RKNVLTKIPDTKGCHLCAVVNGKRSLFLCVALQSSVVLLQWYNPLKK-------FKLFKSKFLFPLISPVPVFVELVSSS  162 (302)
T ss_pred             cccceEeCCcCCceEEEEEEcCCCcEEEEEEcCCeEEEEEccChhhh-------hhhhcccccccCCCCccceEeeeccc
Confidence                0111233333333333211 23344444567777655332111       1111110    011223333333333


Q ss_pred             CceeEEEEEeCCCcEEEEecCC--Ccee----eeeec--C-cceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCc
Q 014475          187 GVSATIVSASEDRTCKVWSLLK--GRLL----RNIVF--P-SVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSY  257 (424)
Q Consensus       187 ~~~~~l~~~~~d~~v~iwd~~~--~~~~----~~~~~--~-~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  257 (424)
                      .....+..|+..+...++++..  ....    .....  . .++....+ +++.++++ -.+ .....|......     
T Consensus       163 ~~~~~lcvG~~~~~~~~~~~~~~~~~~~d~sl~~~~~~~~~~p~~i~~l-~~~e~Llc-~~~-~~v~Vn~~G~~~-----  234 (302)
T smart00036      163 FERPGICIGSDKGGGDVVQFHESLVSKEDLSLPFLSEETSLKPISVVQV-PRDEFLLC-YDE-FGVFVNLYGKRR-----  234 (302)
T ss_pred             ccceEEEEEEcCCCCeEEEEeecccccccccccccccccccCceEEEEE-CCCeEEEE-ECc-EEEEEeCCCCcc-----
Confidence            2225667776643344444432  1100    00011  1 23333333 34444443 333 344455543110     


Q ss_pred             CceeeeeecccCcCeEEEEecCCCEEEEeCCCCcEEEEeCCCCcEEEEEec
Q 014475          258 GMHIIGSLSDHSKAVTCLAYSTGDLLISGSEDGMVRVWDPITHNIVRMFRL  308 (424)
Q Consensus       258 ~~~~~~~~~~~~~~i~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~  308 (424)
                        .....+ .-...+.++++.. .+++.-+.+ .|.++++.+++.++++..
T Consensus       235 --~r~~~l-~w~~~p~~~~~~~-pyll~~~~~-~ievr~l~~~~l~q~i~~  280 (302)
T smart00036      235 --SRNPIL-HWEFMPESFAYHS-PYLLAFHDN-GIEIRSIKTGELLQELAD  280 (302)
T ss_pred             --ccceEE-EcCCcccEEEEEC-CEEEEEcCC-cEEEEECCCCceEEEEec
Confidence              001111 1234556777764 566666544 499999999999998874

Unpublished observations.

>PRK13684 Ycf48-like protein; Provisional

Probab=89.32  E-value=16  Score=32.84  Aligned_cols=151  Identities=9%  Similarity=0.031  Sum_probs=82.1

Q ss_pred             cCceeEEEEEEcCceeEEEEEeCCCcEEE-EecCCCceeeeee--cCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCC
Q 014475          175 TLRITDIVIGYGGVSATIVSASEDRTCKV-WSLLKGRLLRNIV--FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAES  251 (424)
Q Consensus       175 ~~~i~~~~~~~~~~~~~l~~~~~d~~v~i-wd~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  251 (424)
                      ...+.++.+.+++  .+++++ ..|.+.. +| ..++.-....  ....++.+.+.++++.++++. .|.+++=..+.+.
T Consensus       172 ~g~~~~i~~~~~g--~~v~~g-~~G~i~~s~~-~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg~-~G~~~~~s~d~G~  246 (334)
T PRK13684        172 AGVVRNLRRSPDG--KYVAVS-SRGNFYSTWE-PGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLAR-GGQIRFNDPDDLE  246 (334)
T ss_pred             cceEEEEEECCCC--eEEEEe-CCceEEEEcC-CCCCeEEEeeCCCcccceeeeEcCCCCEEEEec-CCEEEEccCCCCC
Confidence            4567888888775  555444 4554432 22 1222222222  456788999999998777654 5655432233322


Q ss_pred             CCCCCcCceeeeee-cccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCCCcEEEEEec---cCCCeeEEEEEecCceee
Q 014475          252 PSTSSYGMHIIGSL-SDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRL---AKGPVNNILVVRRPLYLN  326 (424)
Q Consensus       252 ~~~~~~~~~~~~~~-~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~~~~~~~---~~~~v~~l~~s~~~~~l~  326 (424)
                      .      ++.+..- ......+.++.+.+ +..+ .++.+|.+. .....++.-.....   -......+.|..+++.++
T Consensus       247 s------W~~~~~~~~~~~~~l~~v~~~~~~~~~-~~G~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (334)
T PRK13684        247 S------WSKPIIPEITNGYGYLDLAYRTPGEIW-AGGGNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFV  318 (334)
T ss_pred             c------cccccCCccccccceeeEEEcCCCCEE-EEcCCCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEeCCCceEE
Confidence            1      1111110 11224577888888 5554 455677554 34454544444321   223577888887766655


Q ss_pred             eccCCCceeeccC
Q 014475          327 LGSFSNPHTSSRR  339 (424)
Q Consensus       327 ~~~~d~~i~iw~~  339 (424)
                       .+..|.|.-|+-
T Consensus       319 -~G~~G~il~~~~  330 (334)
T PRK13684        319 -LGQRGVLLRYVG  330 (334)
T ss_pred             -ECCCceEEEecC
Confidence             456787776653

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=89.17  E-value=18  Score=33.30  Aligned_cols=148  Identities=8%  Similarity=0.039  Sum_probs=78.1

Q ss_pred             EEEEEEcCceeEEEEEeCCCcEEEEecCCCc-eeeeeecCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcC
Q 014475          180 DIVIGYGGVSATIVSASEDRTCKVWSLLKGR-LLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYG  258 (424)
Q Consensus       180 ~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~-~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  258 (424)
                      .+...+++  .+++.+.....++-||-.... ..........+..+.+.+++..++++ ..|.+.. ....+..-..   
T Consensus       243 ~v~~~~dG--~~~~vg~~G~~~~s~d~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g-~~G~l~~-S~d~G~~~~~---  315 (398)
T PLN00033        243 TVNRSPDG--DYVAVSSRGNFYLTWEPGQPYWQPHNRASARRIQNMGWRADGGLWLLT-RGGGLYV-SKGTGLTEED---  315 (398)
T ss_pred             eEEEcCCC--CEEEEECCccEEEecCCCCcceEEecCCCccceeeeeEcCCCCEEEEe-CCceEEE-ecCCCCcccc---
Confidence            34444554  555555544334445432111 12223355678899999999888766 4555433 3333210000   


Q ss_pred             ceeeeeec--ccCcCeEEEEecCCCEEEEeCCCCcEEEEeCCCCcEEEEEe---ccCCCeeEEEEEecCceeeeccCCCc
Q 014475          259 MHIIGSLS--DHSKAVTCLAYSTGDLLISGSEDGMVRVWDPITHNIVRMFR---LAKGPVNNILVVRRPLYLNLGSFSNP  333 (424)
Q Consensus       259 ~~~~~~~~--~~~~~i~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~---~~~~~v~~l~~s~~~~~l~~~~~d~~  333 (424)
                       .......  .....+..+.+.+++.++.++..|.+.... ..|+.-....   .-..+...+.|.++++-+++| .+|.
T Consensus       316 -~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G~~G~v~~s~-D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G-~~G~  392 (398)
T PLN00033        316 -FDFEEADIKSRGFGILDVGYRSKKEAWAAGGSGILLRST-DGGKSWKRDKGADNIAANLYSVKFFDDKKGFVLG-NDGV  392 (398)
T ss_pred             -cceeecccCCCCcceEEEEEcCCCcEEEEECCCcEEEeC-CCCcceeEccccCCCCcceeEEEEcCCCceEEEe-CCcE
Confidence             0111111  122458888888844455555678766654 4454433332   234578899998876666554 6676


Q ss_pred             eeec
Q 014475          334 HTSS  337 (424)
Q Consensus       334 i~iw  337 (424)
                      |.-|
T Consensus       393 il~~  396 (398)
T PLN00033        393 LLRY  396 (398)
T ss_pred             EEEe
Confidence            5543

>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]

Probab=89.15  E-value=22  Score=37.12  Aligned_cols=56  Identities=7%  Similarity=-0.079  Sum_probs=35.4

Q ss_pred             EEEeCCCcEEEEecCCCceeeeeecCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCC
Q 014475          193 VSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESP  252 (424)
Q Consensus       193 ~~~~~d~~v~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~  252 (424)
                      +.+...+.+.+|+.........+...    ...+.+++..++++..||.+..||...+..
T Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~v~~h~Dgs~~fWd~s~g~~  268 (993)
T KOG1983|consen  213 LIGFNRGLVVIKDRASKYVQSAYLPN----GQLESRDGSHFVSYHTDGSYAFWDVSSGKL  268 (993)
T ss_pred             ceeeeeeeeeehhcccccchhhcccc----cccCccCCceEEEEEecCCEEeeecCCCce
Confidence            34444555666664433333333211    111278899999999999999999998743

>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3

Probab=89.05  E-value=17  Score=32.93  Aligned_cols=193  Identities=17%  Similarity=0.226  Sum_probs=105.0

Q ss_pred             EEeecCCCCCceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCc--cccCCCCc---eeEEEEECCC--Cceeee
Q 014475            4 LIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQL--REQPSASS---GSILYWSWSK--PQVEVK   76 (424)
Q Consensus         4 ~lat~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~--l~~~~~~~---g~i~vwd~~~--~~~~~~   76 (424)
                      +++... +++-+.+||+. |+.++.+..  +..+.|-. ...|.-.|+.  |++++..+   .+|++|.++.  +.....
T Consensus        70 lIigTd-K~~GL~VYdL~-Gk~lq~~~~--Gr~NNVDv-rygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~L~~v  144 (381)
T PF02333_consen   70 LIIGTD-KKGGLYVYDLD-GKELQSLPV--GRPNNVDV-RYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGELTDV  144 (381)
T ss_dssp             EEEEEE-TTTEEEEEETT-S-EEEEE-S--S-EEEEEE-EEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTEEEE-
T ss_pred             eEEEEe-CCCCEEEEcCC-CcEEEeecC--CCcceeee-ecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCcceEc
Confidence            456666 78889999987 777777742  22222221 1113334443  44444321   5799998764  322211


Q ss_pred             ec-------CCCCeeEEEE--CC-CCC-EEEEecCCCcEEEEEcc---Cc----ceeeeeccccCCeEEEEEccCCcEEE
Q 014475           77 SL-------PAEPIKPIAA--NS-HGT-YIAGGGQSGDIYMWEVA---SG----RLLKKWHAHYRAVTCLVFSEDGSFLI  138 (424)
Q Consensus        77 ~~-------~~~~v~~~~~--s~-~~~-~l~~~~~dg~v~iwd~~---~~----~~~~~~~~~~~~i~~~~~~~~~~~l~  138 (424)
                      ..       ....+..+++  +| +|. +.++...+|.+..|.+.   .+    +.++.+.. ...+..+........|.
T Consensus       145 ~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~-~sQ~EGCVVDDe~g~LY  223 (381)
T PF02333_consen  145 TDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKV-GSQPEGCVVDDETGRLY  223 (381)
T ss_dssp             CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE--SS-EEEEEEETTTTEEE
T ss_pred             CCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecC-CCcceEEEEecccCCEE
Confidence            11       1124566665  44 454 55667788988888774   22    34566654 34688888888778899


Q ss_pred             EeeCCCcEEEEeCCcccchhcccccccceEEeec--CCcCceeEEEEEE--cCceeEEEEEeCCCcEEEEecCC
Q 014475          139 SGSEDGCVRIWSLLTVFEECESQRASHLYLHSFT--GHTLRITDIVIGY--GGVSATIVSASEDRTCKVWSLLK  208 (424)
Q Consensus       139 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~~~--~~~~~~l~~~~~d~~v~iwd~~~  208 (424)
                      .+-++.-|.-|+.+....      .....+....  .....|-.|++-.  ++.+.++++.-.+++..+|+.+.
T Consensus       224 vgEE~~GIW~y~Aep~~~------~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~  291 (381)
T PF02333_consen  224 VGEEDVGIWRYDAEPEGG------NDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREG  291 (381)
T ss_dssp             EEETTTEEEEEESSCCC-------S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESST
T ss_pred             EecCccEEEEEecCCCCC------CcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCC
Confidence            998887676666642110      1122222222  2456777787754  34434555555677899999764

1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.

>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=88.96  E-value=14  Score=34.60  Aligned_cols=72  Identities=17%  Similarity=0.174  Sum_probs=42.7

Q ss_pred             CeeEEEECCCCCEEEEecCCCcEEEEEcc---------Ccceeee---e--------ccccCCeEEEEEccCC---cEEE
Q 014475           82 PIKPIAANSHGTYIAGGGQSGDIYMWEVA---------SGRLLKK---W--------HAHYRAVTCLVFSEDG---SFLI  138 (424)
Q Consensus        82 ~v~~~~~s~~~~~l~~~~~dg~v~iwd~~---------~~~~~~~---~--------~~~~~~i~~~~~~~~~---~~l~  138 (424)
                      .|..+..++.|..++..|.+|.+.++=.+         .|+....   +        ....-.+..++|+|+.   .+|.
T Consensus       105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL~  184 (741)
T KOG4460|consen  105 EVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHLV  184 (741)
T ss_pred             EEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceEE
Confidence            46778889999999999999866554321         2211110   0        0111234556677743   4566


Q ss_pred             EeeCCCcEEEEeCCc
Q 014475          139 SGSEDGCVRIWSLLT  153 (424)
Q Consensus       139 s~~~dg~i~iwd~~~  153 (424)
                      .-+.|..+++||+..
T Consensus       185 iL~sdnviRiy~lS~  199 (741)
T KOG4460|consen  185 LLTSDNVIRIYSLSE  199 (741)
T ss_pred             EEecCcEEEEEecCC
Confidence            666677777777743

>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]

Probab=88.81  E-value=29  Score=35.21  Aligned_cols=199  Identities=15%  Similarity=0.180  Sum_probs=106.8

Q ss_pred             EEEecCCCcEEEEEccCcceeee--------eccccCCeEEEEEc--cCCcEEEEeeCC---CcEEEEeCCcccc--hhc
Q 014475           95 IAGGGQSGDIYMWEVASGRLLKK--------WHAHYRAVTCLVFS--EDGSFLISGSED---GCVRIWSLLTVFE--ECE  159 (424)
Q Consensus        95 l~~~~~dg~v~iwd~~~~~~~~~--------~~~~~~~i~~~~~~--~~~~~l~s~~~d---g~i~iwd~~~~~~--~~~  159 (424)
                      +++....|.+++|-.+.......        +..-...|+..++.  .+|+.++.++.+   +.|++|.+.-...  ...
T Consensus        65 ~i~Vt~nG~l~l~yQ~~~~~~~~~s~~el~s~~~s~~~ithAsi~~~~~g~~ili~t~s~~s~~l~~yrv~I~W~~~~~~  144 (753)
T PF11635_consen   65 CIAVTRNGLLKLWYQKPDGQWNESSTAELESLGSSDDLITHASIAPSDNGKSILIATYSSLSKQLRFYRVQIDWNAKPQQ  144 (753)
T ss_pred             EEEEecCCeEEEEEEcCCCccceeehhhhccccccccceeeceeeecCCCCEEEEEEccccCCceEEEEEEEeccCcCcc
Confidence            44456789999997733221111        11234456655554  567666555554   7888876532111  111


Q ss_pred             cccc--ccceEEee-c-----------------CCcCceeEEEEEE-----cCceeEEEEEeC----CCcEEEEecCCCc
Q 014475          160 SQRA--SHLYLHSF-T-----------------GHTLRITDIVIGY-----GGVSATIVSASE----DRTCKVWSLLKGR  210 (424)
Q Consensus       160 ~~~~--~~~~~~~~-~-----------------~~~~~i~~~~~~~-----~~~~~~l~~~~~----d~~v~iwd~~~~~  210 (424)
                      ....  ....+... .                 ..-..++.+.+-+     +.....+++.+.    ...|.-|.++...
T Consensus       145 ~d~q~~PSl~l~~~~~~~~~~~~~~~~~~~~~~~~~~~LthL~ils~~~~~~~~p~Ili~~~~~~~~~SiI~RweL~~~~  224 (753)
T PF11635_consen  145 IDPQKLPSLFLSHIADETPKDVDPTGWGDPSPDNSMYQLTHLEILSPTPDKDSAPEILIVYSSPNTPSSIIERWELREEQ  224 (753)
T ss_pred             CCCCcCCeEEEEeccccccccccCccccccCcccccccceeEEEeccCCCCCCCCeEEEEEEcCCCCCcEEEEEEEEccC
Confidence            1110  00011100 0                 0223566777765     222244444432    3468899886432


Q ss_pred             e-ee--------------------------eeecCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCC----cCc
Q 014475          211 L-LR--------------------------NIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSS----YGM  259 (424)
Q Consensus       211 ~-~~--------------------------~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~----~~~  259 (424)
                      . ++                          .+..+..|.+++...-+..++....||+|.++|..+-+.....    ...
T Consensus       225 ~~lh~~F~ql~s~~~~~~~~~~~~~l~~~~~i~~~~~V~si~~~~~~~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~~~  304 (753)
T PF11635_consen  225 QPLHPAFQQLGSKKNSSSEPPPTYRLRRLDDITLNKRVVSITSPELDIVVAFAFSDGSIEFRDRNTMKELNETRTNGEPP  304 (753)
T ss_pred             cccchhhhhcCCCCcCCCCCCCceeEEEecccccCCeEEEEEecccCcEEEEEEcCCeEEEEecCcchhhcccccccCCc
Confidence            1 10                          0113456778888788889999999999999998876443322    111


Q ss_pred             eeeeeec------ccCcCeEEEEecC-CCEEEEeCCCCcEE
Q 014475          260 HIIGSLS------DHSKAVTCLAYST-GDLLISGSEDGMVR  293 (424)
Q Consensus       260 ~~~~~~~------~~~~~i~~~~~~~-~~~l~t~~~dg~i~  293 (424)
                      ..+..+.      .+..++..++||| +..++.-..+|.+.
T Consensus       305 ~~v~s~~~~Gf~fp~~~~~~~vafSPt~c~~v~~~~~~~~~  345 (753)
T PF11635_consen  305 NTVTSLFQAGFHFPCIQPPLHVAFSPTMCSLVQIDEDGKTK  345 (753)
T ss_pred             cccccccccccccccCCCCceEEECcccceEEEEecCCCce
Confidence            1111111      1122455688999 88888888888866

It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=88.78  E-value=1.1  Score=25.56  Aligned_cols=41  Identities=7%  Similarity=-0.112  Sum_probs=25.8

Q ss_pred             cCCCccccCCCCceeEEEEECCCCceeeeecCCCCeeEEEE
Q 014475           48 ASSQLREQPSASSGSILYWSWSKPQVEVKSLPAEPIKPIAA   88 (424)
Q Consensus        48 ~~~~~l~~~~~~~g~i~vwd~~~~~~~~~~~~~~~v~~~~~   88 (424)
                      |+++.+.++...++.|.++|..+.+.............+.|
T Consensus         1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg~~P~~i~~   41 (42)
T TIGR02276         1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVGGYPFGVAV   41 (42)
T ss_pred             CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECCCCCceEEe
Confidence            46676776665568999999877765544433333444444

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>PF12768 Rax2: Cortical protein marker for cell polarity

Probab=88.35  E-value=15  Score=31.85  Aligned_cols=115  Identities=7%  Similarity=0.156  Sum_probs=67.8

Q ss_pred             CcEEEEecCCCceeeeee-cCcceeEEEECCCCCEEEEEe------CCCcEEEEEcCCCCCCCCCcCceeeee-e-cccC
Q 014475          199 RTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYAGS------RDGSIYIAALNAESPSTSSYGMHIIGS-L-SDHS  269 (424)
Q Consensus       199 ~~v~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~------~dg~i~i~d~~~~~~~~~~~~~~~~~~-~-~~~~  269 (424)
                      ..|++||..+.+-...-. ..+.|+.+.|..+.++++.|.      ....+..||+.+..       +..... . ..-.
T Consensus        16 ~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~-------w~~~~~~~s~~ip   88 (281)
T PF12768_consen   16 PGLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQT-------WSSLGGGSSNSIP   88 (281)
T ss_pred             CEEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCe-------eeecCCcccccCC
Confidence            458999987665433322 567899999997777777664      34578889988864       111211 1 1234


Q ss_pred             cCeEEEEecC---CCEEEEeC-C--CCcEEEEeCCCCcEEEE-EeccCCCeeEEEEEe
Q 014475          270 KAVTCLAYST---GDLLISGS-E--DGMVRVWDPITHNIVRM-FRLAKGPVNNILVVR  320 (424)
Q Consensus       270 ~~i~~~~~~~---~~~l~t~~-~--dg~i~iwd~~~~~~~~~-~~~~~~~v~~l~~s~  320 (424)
                      ++|+.+.+..   .++.+.|. .  +..|..||=.+...+.. .......|..+.+-|
T Consensus        89 gpv~a~~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~W~~i~~~~~~~~t~I~~l~~~~  146 (281)
T PF12768_consen   89 GPVTALTFISNDGSNFWVAGRSANGSTFLMKYDGSSWSSIGSDILGSGTTIRGLQVLP  146 (281)
T ss_pred             CcEEEEEeeccCCceEEEeceecCCCceEEEEcCCceEeccccccCCCCEEEEEEEEe
Confidence            7788887744   44555554 2  33477787555544444 222234555555443

>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A

Probab=88.18  E-value=25  Score=33.73  Aligned_cols=242  Identities=14%  Similarity=0.102  Sum_probs=0.0

Q ss_pred             EEECCCCCEEEEecCCCcEEEEEccC-cceeeeeccc-------cCCeEEEEEcc-----CCcEEEEeeCCCc----EEE
Q 014475           86 IAANSHGTYIAGGGQSGDIYMWEVAS-GRLLKKWHAH-------YRAVTCLVFSE-----DGSFLISGSEDGC----VRI  148 (424)
Q Consensus        86 ~~~s~~~~~l~~~~~dg~v~iwd~~~-~~~~~~~~~~-------~~~i~~~~~~~-----~~~~l~s~~~dg~----i~i  148 (424)
                      ++..|.++.++.+..+|.+.|+-++. .........+       ...|..++|..     +...++.--.+..    +..
T Consensus        49 l~vDP~~R~i~v~a~e~~~~v~~l~~~~~~~~~~~~~~~~pi~s~~~i~~~~FL~~~~~~~~p~la~L~~~~~~~~~~~~  128 (504)
T PF10433_consen   49 LAVDPSGRCIAVSAYEGNFLVYPLNRSLDSDIAFSPHINSPIKSEGNILDMCFLHPSVGYDNPTLAILYVDSQRRTHLVT  128 (504)
T ss_dssp             EEE-TTSSEEEEEEBTTEEEEEE-SS----T-TT---EEEE--S-SEEEEEEEES---S-SS-EEEEEEEETT-EEEEEE
T ss_pred             EEECCcCCEEEEEecCCeEEEEEecccccccccccccccccccCCceEEEEEEEecccCCCCceEEEEEEEecccceeEE


Q ss_pred             EeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCC----ceeeeeec----Ccc
Q 014475          149 WSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKG----RLLRNIVF----PSV  220 (424)
Q Consensus       149 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~----~~~~~~~~----~~~  220 (424)
                      ++.......................+..+ .-+.--|.+  .-.+..+.++.+.+-+....    +....-..    ..-
T Consensus       129 y~w~~~~~l~~~~~~~~~~~~l~~~~~~p-~~LIPlp~~--~ggllV~~~~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~  205 (504)
T PF10433_consen  129 YEWSLDDGLNHVISKSTLPIRLPNEDELP-SFLIPLPNP--PGGLLVGGENIIIYKNHLIGSGDYSFLSIPSPPSSSSSL  205 (504)
T ss_dssp             EE--------EETTTTEEEE--EEEE-TT-EEEEEE-TT--T-SEEEEESSEEEEEE------TTEEEEE--H-HHHTS-
T ss_pred             EeeecccccceeeeeccccccccccCCCc-cEEEEcCCC--CcEEEEECCEEEEEecccccccccccccccCCccCCCce


Q ss_pred             eeEEEE-------CCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeeccc-CcCeEEEEecCCC--EEEEeC--C
Q 014475          221 IDAIAL-------DPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDH-SKAVTCLAYSTGD--LLISGS--E  288 (424)
Q Consensus       221 i~~~~~-------~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~--~l~t~~--~  288 (424)
                      +.+...       ..++..++.+..+|.++...+.....       ......-+. ....+++.+-...  +++.|+  .
T Consensus       206 ~~~~~~p~~~~~~~~~~~~~lL~~e~G~l~~l~l~~~~~-------~i~i~~~g~~~~~~s~l~~l~~g~d~lf~gs~~g  278 (504)
T PF10433_consen  206 WTSWARPERNISYDKDGDRILLQDEDGDLYLLTLDNDGG-------SISITYLGTLCSIASSLTYLKNGGDYLFVGSEFG  278 (504)
T ss_dssp             EEEEEE------SSTTSSEEEEEETTSEEEEEEEEEEEE-------EEEEEEEEE--S-ESEEEEESTT--EEEEEESSS
T ss_pred             EEEEEeccccceecCCCCEEEEEeCCCeEEEEEEEECCC-------eEEEEEcCCcCChhheEEEEcCCCEEEEEEEecC


Q ss_pred             CCcEEEEeCCCCcEEEEEeccCCCeeEEEEEecC-----------ceeeecc--CCCceeecc
Q 014475          289 DGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRP-----------LYLNLGS--FSNPHTSSR  338 (424)
Q Consensus       289 dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~-----------~~l~~~~--~d~~i~iw~  338 (424)
                      |+.+.-|....-+.+.++. .-+||..++..+..           +.+++++  .+|.+++..
T Consensus       279 ds~l~~~~~~~l~~~~~~~-N~~Pi~D~~v~~~~~~~~~~~~~~~~lv~~sG~g~~gsL~~lr  340 (504)
T PF10433_consen  279 DSQLLQISLSNLEVLDSLP-NWGPIVDFCVVDSSNSGQPSNPSSDQLVACSGAGKRGSLRILR  340 (504)
T ss_dssp             -EEEEEEESESEEEEEEE-----SEEEEEEE-TSSSSS-------EEEEEESSGGG-EEEEEE
T ss_pred             CcEEEEEeCCCcEEEEecc-CcCCccceEEeccccCCCCcccccceEEEEECcCCCCcEEEEe

...

>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast)

Probab=88.05  E-value=28  Score=34.10  Aligned_cols=162  Identities=20%  Similarity=0.251  Sum_probs=86.5

Q ss_pred             CCCCeeEEEECCCCCEEEEecCCCcEEEEEccCcceee--eecc-ccC------CeEEEEEccCCcEEEEeeC-CC---c
Q 014475           79 PAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLK--KWHA-HYR------AVTCLVFSEDGSFLISGSE-DG---C  145 (424)
Q Consensus        79 ~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~--~~~~-~~~------~i~~~~~~~~~~~l~s~~~-dg---~  145 (424)
                      ..+.|..+.|.++++.+++...+|.|.+||...+....  .+.. +..      -|.....-....++++.+. ++   .
T Consensus       128 l~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys~fv~~~~~~~~~~~ll~v~~~~~~k~~  207 (670)
T PF10395_consen  128 LDDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYSKFVNDFELENGKDLLLTVSQLSNSKLS  207 (670)
T ss_pred             cccceEEEEEecCCCEEEEEEcCCcEEEEeccccccccccccccccccceehhhhhcccccccCCceEEEEEEcCCCcEE
Confidence            46789999999999999999999999999994332211  2211 111      1222221112344554444 22   3


Q ss_pred             EEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeeecCccee---
Q 014475          146 VRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVID---  222 (424)
Q Consensus       146 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~i~---  222 (424)
                      .+++.+....       .....+.....+........|+...  ..|.-- .+++|.+|++...+..+.+..+.-+.   
T Consensus       208 ykL~~l~~~~-------~~~~El~s~~~e~~~~~~s~f~Y~~--G~LY~l-~~~~i~~ysip~f~~~~tI~l~~ii~~~~  277 (670)
T PF10395_consen  208 YKLISLSNES-------SSIFELSSTILENFGLEDSKFCYQF--GKLYQL-SKKTISSYSIPNFQIQKTISLPSIIDKES  277 (670)
T ss_pred             EEEEEeccCC-------cceEEeehheeccCCcccceEEEeC--CEEEEE-eCCEEEEEEcCCceEEEEEEechhhcccc
Confidence            5666661100       1111111111222223333444332  233333 67899999998888777776442222   


Q ss_pred             --EEEEC-CCCCEEEEEeCCCcEEEEEcCCCC
Q 014475          223 --AIALD-PAEHVFYAGSRDGSIYIAALNAES  251 (424)
Q Consensus       223 --~~~~~-~~~~~l~~~~~dg~i~i~d~~~~~  251 (424)
                        .+.+. |..++++.+ .++.|++.|+.-..
T Consensus       278 ~~~vSl~~~s~nRvLLs-~~nkIyLld~~~~s  308 (670)
T PF10395_consen  278 DDLVSLKPPSPNRVLLS-VNNKIYLLDLKFES  308 (670)
T ss_pred             ccceEeecCCCCeEEEE-cCCEEEEEeehhhh
Confidence              22332 344444443 35689999987754

It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].

>TIGR01063 gyrA DNA gyrase, A subunit

Probab=87.08  E-value=38  Score=34.60  Aligned_cols=245  Identities=12%  Similarity=0.090  Sum_probs=122.2

Q ss_pred             eecCCCccccCCCCceeEEEEECCCCce---------eeeecCCCCeeEEEECCCCCEEEEecCCCcEEEEEccC-----
Q 014475           46 FLASSQLREQPSASSGSILYWSWSKPQV---------EVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVAS-----  111 (424)
Q Consensus        46 ~~~~~~~l~~~~~~~g~i~vwd~~~~~~---------~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~-----  111 (424)
                      +.++...+++.+.+ |.|+--+...-..         .......+.+..+........++..+..|.+.......     
T Consensus       492 li~~e~~~vllS~~-GyIKri~~~~~~~~~~~~~g~s~~klKe~D~l~~~~~~~t~d~LllfTs~Grv~~l~~~~IP~~~  570 (800)
T TIGR01063       492 LIARENVVVTLSHN-GYVKRVPVSAYRLQKRGGKGVSGADMKDDDFIEQLLVASTHDYLLFFTNRGKVYWLKVYQIPEAS  570 (800)
T ss_pred             ccCcceEEEEEcCC-CEEEecchhhhhhhcccCcCccccccCCCCeeEEEEEecCCCeEEEEeCCCcEEEEEhhhCcCCC
Confidence            44555566666666 8888776543211         01112334555555555566666667778776665422     


Q ss_pred             ----ccee---eeeccccCCeEEEEEc--cCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEE
Q 014475          112 ----GRLL---KKWHAHYRAVTCLVFS--EDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIV  182 (424)
Q Consensus       112 ----~~~~---~~~~~~~~~i~~~~~~--~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  182 (424)
                          |..+   ..+.....-+.++...  .+...++..+.+|.++-.++........    .......+.. .+.+..+.
T Consensus       571 r~~~G~~i~~ll~L~~~E~Iv~~i~~~~~~~~~~lvliT~~GyiKRi~l~~~~~~~r----~G~~aiklke-~D~lv~v~  645 (800)
T TIGR01063       571 RTAKGKPIVNLLPLQPDERITAILSVKEFDDGLYLFFATKNGVVKKTSLTEFSNIRS----NGIIAIKLDD-GDELISVR  645 (800)
T ss_pred             cCCCCcCHHHhccCCCCCeEEEEEEeccCCCCCEEEEEeCCCEEEEEEhHHhhhhcc----CCcccccCCC-CCEEEEEE
Confidence                1222   1122222334445532  2556789999999999988754321110    1111112222 33444444


Q ss_pred             EEEcCceeEEEEEeCCCcEEEEecCC---------CceeeeeecCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCC
Q 014475          183 IGYGGVSATIVSASEDRTCKVWSLLK---------GRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPS  253 (424)
Q Consensus       183 ~~~~~~~~~l~~~~~d~~v~iwd~~~---------~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~  253 (424)
                      .....  ..++..+..|.+..+....         |.....+.....|.++..-+++..++..+..|.++...+..-...
T Consensus       646 ~~~~~--d~lll~Ts~Gr~~r~~v~eIp~~gr~~~Gv~~i~L~~~E~Vv~~~~v~~~~~ll~vT~~G~~Kr~~l~e~~~~  723 (800)
T TIGR01063       646 LTSGD--DEVMLGSKNGKAVRFPEEDVRPMGRAARGVRGIKLKNEDFVVSLLVVSEESYLLIVTENGYGKRTSIEEYRET  723 (800)
T ss_pred             EeCCC--CEEEEEECCCcEEEEEhhhcCCcCCCCCCeecccCCCCCEEEEEEEeccccEEEEEecCCcEEEEEHHHcccc
Confidence            44333  4566666677766665432         111122223344555544445557888888898888876543221


Q ss_pred             CCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCC
Q 014475          254 TSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPI  298 (424)
Q Consensus       254 ~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~  298 (424)
                      ...........+......+..+...+ ...++..+.+|.+..++..
T Consensus       724 ~R~~kGv~~ikl~~~~d~lv~~~~v~~~~~v~liT~~G~~lrf~~~  769 (800)
T TIGR01063       724 SRGGKGVKSIKITDRNGQVVGAIAVDDDDELMLITSAGKLIRTSVQ  769 (800)
T ss_pred             CCCCcceEEEEccCCCCeEEEEEEecCCCeEEEEecCCeEEEeeHh
Confidence            11000111112222223343433333 4456666667777666654

This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV.

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=86.88  E-value=27  Score=32.71  Aligned_cols=115  Identities=8%  Similarity=0.023  Sum_probs=60.7

Q ss_pred             ccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcC----ceeEEEEEe
Q 014475          121 HYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGG----VSATIVSAS  196 (424)
Q Consensus       121 ~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~----~~~~l~~~~  196 (424)
                      .-...+.|+|.|++++|++--..|.|++++..+......    .................|+++|+-    ...+|....
T Consensus        28 GL~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~----~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvsy  103 (454)
T TIGR03606        28 GLNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVV----FTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYISY  103 (454)
T ss_pred             CCCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeee----ecCCceeccCCCCceeeEEECCCccccCCCcEEEEEE
Confidence            445678999999998776654469999997644211000    000000011136778899998873    113444332


Q ss_pred             ----------CCCcEEEEecCCC--ce---eeeee-c----CcceeEEEECCCCCEEEEEeCC
Q 014475          197 ----------EDRTCKVWSLLKG--RL---LRNIV-F----PSVIDAIALDPAEHVFYAGSRD  239 (424)
Q Consensus       197 ----------~d~~v~iwd~~~~--~~---~~~~~-~----~~~i~~~~~~~~~~~l~~~~~d  239 (424)
                                ....|.-|.+...  ..   ...+. .    ...-..+.|.|+|.++++.+..
T Consensus       104 t~~~~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~LYVs~GD~  166 (454)
T TIGR03606       104 TYKNGDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGKIYYTIGEQ  166 (454)
T ss_pred             eccCCCCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCcEEEEECCC
Confidence                      1233444554321  11   11111 1    1235578899999866655443

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>PRK13613 lipoprotein LpqB; Provisional

Probab=86.86  E-value=33  Score=33.62  Aligned_cols=196  Identities=12%  Similarity=0.045  Sum_probs=99.9

Q ss_pred             ceEEecceeecCCCccccCCCCceeEEEEECCCCce----eeeecCCCCeeEEEECCCCCEEEEecC--CC--cEEEEEc
Q 014475           38 GLACVGQRFLASSQLREQPSASSGSILYWSWSKPQV----EVKSLPAEPIKPIAANSHGTYIAGGGQ--SG--DIYMWEV  109 (424)
Q Consensus        38 ~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~----~~~~~~~~~v~~~~~s~~~~~l~~~~~--dg--~v~iwd~  109 (424)
                      .+.+.+  .++++..+|....+...+.+..+..+..    .........++.-.|.+++ .+-+...  ++  .+++..-
T Consensus       364 ~~~s~a--vS~~g~~~A~v~~~~~~l~vg~~~~~~~~~~~~~~~~~~~~Lt~PS~d~~g-~vWtvd~~~~~~~vl~v~~~  440 (599)
T PRK13613        364 PLRRVA--VSRDESRAAGISADGDSVYVGSLTPGASIGVHSWGVTADGRLTSPSWDGRG-DLWVVDRDPADPRLLWLLQG  440 (599)
T ss_pred             CccceE--EcCCCceEEEEcCCCcEEEEeccCCCCccccccceeeccCcccCCcCcCCC-CEEEecCCCCCceEEEEEcC
Confidence            455666  8899988887776534666665533322    1112234456777777776 3444422  22  2555542


Q ss_pred             cCcceeee-ecccc-CCeEEEEEccCCcEEEEeeC---CCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEE
Q 014475          110 ASGRLLKK-WHAHY-RAVTCLVFSEDGSFLISGSE---DGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIG  184 (424)
Q Consensus       110 ~~~~~~~~-~~~~~-~~i~~~~~~~~~~~l~s~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  184 (424)
                       +++.... ..... ..|..+..++||-.++.-..   .++|.+=-+....... .   .......+......+.++.|.
T Consensus       441 -~G~~~~V~~~~l~g~~I~~lrvSrDG~RvAvv~~~~g~~~v~va~V~R~~~G~-~---~l~~~~~l~~~l~~v~~~~W~  515 (599)
T PRK13613        441 -DGEPVEVRTPELDGHRVVAVRVARDGVRVALIVEKDGRRSLQIGRIVRDAKAV-V---SVEEFRSLAPELEDVTDMSWA  515 (599)
T ss_pred             -CCcEEEeeccccCCCEeEEEEECCCccEEEEEEecCCCcEEEEEEEEeCCCCc-E---EeeccEEeccCCCccceeEEc
Confidence             4433210 11222 37999999999988765443   3556665543311110 0   000111222223358899998


Q ss_pred             EcCceeEEEEEe-CCCcEEEE--ecCCCceee-eeecCcceeEEEECCCCC-EEEEEeCCCcEE
Q 014475          185 YGGVSATIVSAS-EDRTCKVW--SLLKGRLLR-NIVFPSVIDAIALDPAEH-VFYAGSRDGSIY  243 (424)
Q Consensus       185 ~~~~~~~l~~~~-~d~~v~iw--d~~~~~~~~-~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~  243 (424)
                      .+.  .+++.+. .++...+|  ++....... ....-..+..++...+.. .++++..++.|.
T Consensus       516 ~~~--sL~Vlg~~~~~~~~v~~v~vdG~~~~~~~~~~v~~~~~ia~~~~~~~~~v~~~~~~~v~  577 (599)
T PRK13613        516 GDS--QLVVLGREEGGVQQARYVQVDGSTPPASAPAAVTGVESITASEDERLPLVAGTSEDGIV  577 (599)
T ss_pred             CCC--EEEEEeccCCCCcceEEEecCCcCcccccccCCCCeeEEEecCCCCceEEEEecCCCeE
Confidence            886  6655443 33233444  443222211 112334566666666655 455435566553

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=86.56  E-value=3.6  Score=39.90  Aligned_cols=80  Identities=19%  Similarity=0.277  Sum_probs=44.3

Q ss_pred             CCCCEEEEEeCCCcEEEEEcCCCCCCCCCc------Cc---eeeeee--------cccCcCeEEEEecC-----CCEEEE
Q 014475          228 PAEHVFYAGSRDGSIYIAALNAESPSTSSY------GM---HIIGSL--------SDHSKAVTCLAYST-----GDLLIS  285 (424)
Q Consensus       228 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~------~~---~~~~~~--------~~~~~~i~~~~~~~-----~~~l~t  285 (424)
                      ++...++++..||.+...............      ..   ..+..+        .........++++.     ..++++
T Consensus       156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t  235 (547)
T PF11715_consen  156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT  235 (547)
T ss_dssp             -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred             cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence            577788888899988888876522000000      00   000000        00112333344332     679999


Q ss_pred             eCCCCcEEEEeCCCCcEEEEEe
Q 014475          286 GSEDGMVRVWDPITHNIVRMFR  307 (424)
Q Consensus       286 ~~~dg~i~iwd~~~~~~~~~~~  307 (424)
                      .+.|+.+|+||+.+++++.+..
T Consensus       236 l~~D~~LRiW~l~t~~~~~~~~  257 (547)
T PF11715_consen  236 LSRDHTLRIWSLETGQCLATID  257 (547)
T ss_dssp             EETTSEEEEEETTTTCEEEEEE
T ss_pred             EeCCCeEEEEECCCCeEEEEec
Confidence            9999999999999999977664

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]

Probab=86.49  E-value=40  Score=34.26  Aligned_cols=67  Identities=12%  Similarity=-0.002  Sum_probs=50.7

Q ss_pred             CcCeEEEEecC-CCEEEEeCCCCcEEEEeCCCCcEEEEE----e---------------ccCCCeeEEEEEecCceeeec
Q 014475          269 SKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMF----R---------------LAKGPVNNILVVRRPLYLNLG  328 (424)
Q Consensus       269 ~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~~~~~----~---------------~~~~~v~~l~~s~~~~~l~~~  328 (424)
                      .+.|.++.... +.+++..-.||+|.++|..+.+.+...    .               .+..++..++|||.+..++.-
T Consensus       259 ~~~V~si~~~~~~~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~~~~~v~s~~~~Gf~fp~~~~~~~vafSPt~c~~v~~  338 (753)
T PF11635_consen  259 NKRVVSITSPELDIVVAFAFSDGSIEFRDRNTMKELNETRTNGEPPNTVTSLFQAGFHFPCIQPPLHVAFSPTMCSLVQI  338 (753)
T ss_pred             CCeEEEEEecccCcEEEEEEcCCeEEEEecCcchhhcccccccCCccccccccccccccccCCCCceEEECcccceEEEE
Confidence            45678887777 889999999999999998877555444    1               011134468899999999999


Q ss_pred             cCCCcee
Q 014475          329 SFSNPHT  335 (424)
Q Consensus       329 ~~d~~i~  335 (424)
                      ..+|.+.
T Consensus       339 ~~~~~~~  345 (753)
T PF11635_consen  339 DEDGKTK  345 (753)
T ss_pred             ecCCCce
Confidence            9999855

It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.

>COG5290 IkappaB kinase complex, IKAP component [Transcription]

Probab=86.37  E-value=29  Score=34.48  Aligned_cols=31  Identities=6%  Similarity=0.037  Sum_probs=24.0

Q ss_pred             ccCCeEEEEEccCCcEEEEeeCCCcEEEEeC
Q 014475          121 HYRAVTCLVFSEDGSFLISGSEDGCVRIWSL  151 (424)
Q Consensus       121 ~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~  151 (424)
                      -...|...+|+.|.+.++....+..|.+++-
T Consensus       111 v~nGIvaa~wS~DE~~~cvvt~~r~il~~~k  141 (1243)
T COG5290         111 VSNGIVAASWSADEKTWCVVTSTREILLFDK  141 (1243)
T ss_pred             ccCceEEEeeccCCceEEEEEcCceEEEEec
Confidence            4567889999999987776666778887764

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=86.05  E-value=4.2  Score=22.98  Aligned_cols=36  Identities=17%  Similarity=0.145  Sum_probs=25.7

Q ss_pred             EEEEEeCCCcEEEEecCCCceeeeeecCcceeEEEE
Q 014475          191 TIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIAL  226 (424)
Q Consensus       191 ~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~i~~~~~  226 (424)
                      .+++...++.|.++|..+++.+..+........+++
T Consensus         6 lyv~~~~~~~v~~id~~~~~~~~~i~vg~~P~~i~~   41 (42)
T TIGR02276         6 LYVTNSGSNTVSVIDTATNKVIATIPVGGYPFGVAV   41 (42)
T ss_pred             EEEEeCCCCEEEEEECCCCeEEEEEECCCCCceEEe
Confidence            444455688999999999888888775555555554

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=86.05  E-value=2.8  Score=40.70  Aligned_cols=83  Identities=16%  Similarity=0.172  Sum_probs=44.8

Q ss_pred             cCCcEEEEeeCCCcEEEEeCCccc---chhccc-ccccc---eEE--------eecCCcCceeEEEEEE----cCceeEE
Q 014475          132 EDGSFLISGSEDGCVRIWSLLTVF---EECESQ-RASHL---YLH--------SFTGHTLRITDIVIGY----GGVSATI  192 (424)
Q Consensus       132 ~~~~~l~s~~~dg~i~iwd~~~~~---~~~~~~-~~~~~---~~~--------~~~~~~~~i~~~~~~~----~~~~~~l  192 (424)
                      ++...++.+..||.+.........   ...... .....   .+.        ...........+++..    +.  .++
T Consensus       156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~l  233 (547)
T PF11715_consen  156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDD--TFL  233 (547)
T ss_dssp             -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETT--TEE
T ss_pred             cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCC--CEE
Confidence            366678888899999888775411   100000 00000   000        0011123344555554    33  799


Q ss_pred             EEEeCCCcEEEEecCCCceeeeee
Q 014475          193 VSASEDRTCKVWSLLKGRLLRNIV  216 (424)
Q Consensus       193 ~~~~~d~~v~iwd~~~~~~~~~~~  216 (424)
                      ++.+.|+++|+||+.+++++....
T Consensus       234 ~tl~~D~~LRiW~l~t~~~~~~~~  257 (547)
T PF11715_consen  234 FTLSRDHTLRIWSLETGQCLATID  257 (547)
T ss_dssp             EEEETTSEEEEEETTTTCEEEEEE
T ss_pred             EEEeCCCeEEEEECCCCeEEEEec
Confidence            999999999999999999976654

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=85.99  E-value=19  Score=32.16  Aligned_cols=113  Identities=19%  Similarity=0.222  Sum_probs=0.0

Q ss_pred             cceeEEEECCCCCEEEEEeCCCc------EEEEEcCCCCCCCCCcCceeeeeecccCcCeE--------EEEecC-CCEE
Q 014475          219 SVIDAIALDPAEHVFYAGSRDGS------IYIAALNAESPSTSSYGMHIIGSLSDHSKAVT--------CLAYST-GDLL  283 (424)
Q Consensus       219 ~~i~~~~~~~~~~~l~~~~~dg~------i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~--------~~~~~~-~~~l  283 (424)
                      +.+..+.+.|++..+++.+.+|.      ++.+++.................+....+...        +|++.+ +.++
T Consensus        20 GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~~   99 (326)
T PF13449_consen   20 GGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSFW   99 (326)
T ss_pred             CcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCEE


Q ss_pred             EEeCCC------CcEEEEeCCCCcEEEEE---------------eccCCCeeEEEEEecCceeeeccCCC
Q 014475          284 ISGSED------GMVRVWDPITHNIVRMF---------------RLAKGPVNNILVVRRPLYLNLGSFSN  332 (424)
Q Consensus       284 ~t~~~d------g~i~iwd~~~~~~~~~~---------------~~~~~~v~~l~~s~~~~~l~~~~~d~  332 (424)
                      ++.-.+      ..|+-++.. |+.+..+               ...+...-+|+++|+|+.|.++....
T Consensus       100 is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~  168 (326)
T PF13449_consen  100 ISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESP  168 (326)
T ss_pred             EEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECcc

>COG5308 NUP170 Nuclear pore complex subunit [Intracellular trafficking and secretion]

Probab=85.95  E-value=11  Score=37.76  Aligned_cols=138  Identities=14%  Similarity=0.214  Sum_probs=78.5

Q ss_pred             CCCceEEEeCCCCceEEEeeCCCCCCCceEEec---ceeecC-CCccccCCCCceeEEEEECC----CCceeeee-----
Q 014475           11 ADTGIGCWDLESGAEQLRYKSCASPPHGLACVG---QRFLAS-SQLREQPSASSGSILYWSWS----KPQVEVKS-----   77 (424)
Q Consensus        11 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~---~~~~~~-~~~l~~~~~~~g~i~vwd~~----~~~~~~~~-----   77 (424)
                      .|+.+.+||..++...+.+......+-.|.-+.   ..|.+. ..+|+++..  ..+.++-+.    +++.....     
T Consensus       100 ~dnkLiLWnynn~neyq~idd~shtIlkVkLvrPkantFvs~i~hlL~vAT~--~e~~ilgvs~d~~T~Els~fnTgl~v  177 (1263)
T COG5308         100 NDNKLILWNYNNSNEYQEIDDFSHTILKVKLVRPKANTFVSRISHLLFVATE--KEVMILGVSKDTKTGELSLFNTGLVV  177 (1263)
T ss_pred             cCCEEEEEecCCCcchhhhhhhhhheeEEEEeccCCcccHHhhhhhhhhhhh--heeeEEEEEeccccceeEEEecceEE
Confidence            478999999998877666554433333333332   112222 233344433  566665443    33333222     


Q ss_pred             -cCCCCeeEEEECCCCCEEEEecCCCcEEEEEccCc--------ce-------------e---eeeccccCCeEEEEEcc
Q 014475           78 -LPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASG--------RL-------------L---KKWHAHYRAVTCLVFSE  132 (424)
Q Consensus        78 -~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~--------~~-------------~---~~~~~~~~~i~~~~~~~  132 (424)
                       ..+-.|.|+.-+.+|+.+++|-.|  +.+|.+.-.        ++             +   ..+.-|...|..++...
T Consensus       178 svqGinV~civs~e~GrIFf~g~~d--~nvyEl~Y~~sd~wfnskcskiclTkS~l~sllPs~~~~~ipgetI~Ql~vDq  255 (1263)
T COG5308         178 SVQGINVRCIVSEEDGRIFFGGEND--PNVYELVYKSSDSWFNSKCSKICLTKSILSSLLPSFFSFGIPGETIKQLAVDQ  255 (1263)
T ss_pred             eccCceeEEEEeccCCcEEEecCCC--CCeEEEEEeccchhhhhhhhccCCcHHHHHhhcccccccCCcccchhheeecc
Confidence             234578888888899999988776  777766311        00             0   01123556677777766


Q ss_pred             CCcEEEEeeCCCcEEEEeCC
Q 014475          133 DGSFLISGSEDGCVRIWSLL  152 (424)
Q Consensus       133 ~~~~l~s~~~dg~i~iwd~~  152 (424)
                      .-..|.+-+....|+-|.+.
T Consensus       256 sRg~ly~Lr~kS~Vray~it  275 (1263)
T COG5308         256 SRGLLYVLRKKSAVRAYSIT  275 (1263)
T ss_pred             cccceeeecccceeeeEeee
Confidence            55566666666677777663

>KOG3522 consensus Predicted guanine nucleotide exchange factor [Signal transduction mechanisms]

Probab=85.91  E-value=12  Score=37.05  Aligned_cols=137  Identities=15%  Similarity=0.170  Sum_probs=76.1

Q ss_pred             EeecCCCCCceEEEeCCCCceEEEe-eCCCCCCCceEEecceeec--------CCCccccCCCCceeEEEEECCCCceee
Q 014475            5 IASSSVADTGIGCWDLESGAEQLRY-KSCASPPHGLACVGQRFLA--------SSQLREQPSASSGSILYWSWSKPQVEV   75 (424)
Q Consensus         5 lat~~~~dg~i~vwd~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~--------~~~~l~~~~~~~g~i~vwd~~~~~~~~   75 (424)
                      +..|+ .+|.|-|+.-..+...... .........+.++.  +++        +|...+.+..-+|.   ||.+ +.. .
T Consensus       550 ic~gt-q~ssisissss~~s~ke~~~~~~spe~~~v~~l~--~ss~Slgagl~dgt~a~y~rap~gS---wd~e-p~~-~  621 (925)
T KOG3522|consen  550 ICLGT-QTSSISISSSSLDSIKEVTSEPPSPEHESVKLLL--FSSGSLGAGLIDGTLAVYGRAPSGS---WDGE-PNI-S  621 (925)
T ss_pred             ccccC-ccceeEEeeccCCcccceeccCCCCchhhhhhhh--ccccccccCccCCccccccCCCCCC---CCCC-Ccc-c
Confidence            35567 8889999886633322222 22222223343333  222        22222222222233   5544 111 1


Q ss_pred             eecCCCCeeEEEECCCCCEEEEecCCCcEEEEEccCcceeeeec---cccCCeEEEEEccCCcEEEEeeCCCcEEEEeCC
Q 014475           76 KSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWH---AHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLL  152 (424)
Q Consensus        76 ~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~---~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~  152 (424)
                      ......+|...++..|   ++.|+.+|.|.++...+......+.   .|...|+++....++-+++.++.| .+++++.+
T Consensus       622 ~~~g~lPvrsla~~ed---~~was~gG~V~vi~~tt~~~~~~leahqee~~~Vthm~~~~~gVwvafasG~-~~rlfhte  697 (925)
T KOG3522|consen  622 IPTGSLPVRSLAFQED---FVWASEGGCVHVIPSTTFIRSWDLEAHQEEAHSVTHMLYLDNGVWVAFASGD-EERLFHTE  697 (925)
T ss_pred             cccCCccccchhhhhc---eeeeecCCceEEEechhccccchhHHHHhhcceEEEEEeeCCceEEEEcCCC-EEEEeccc
Confidence            1233568888888644   4455678999999988766555543   356689999998777666655554 56666554


Q ss_pred             c
Q 014475          153 T  153 (424)
Q Consensus       153 ~  153 (424)
                      +
T Consensus       698 t  698 (925)
T KOG3522|consen  698 T  698 (925)
T ss_pred             c
Confidence            4

>PLN02193 nitrile-specifier protein

Probab=85.64  E-value=33  Score=32.56  Aligned_cols=188  Identities=7%  Similarity=0.084  Sum_probs=86.4

Q ss_pred             CCCccccCCCCc------eeEEEEECCCCceeeeecC---CC--CeeEEEECCCCCEEEEecCC-----CcEEEEEccCc
Q 014475           49 SSQLREQPSASS------GSILYWSWSKPQVEVKSLP---AE--PIKPIAANSHGTYIAGGGQS-----GDIYMWEVASG  112 (424)
Q Consensus        49 ~~~~l~~~~~~~------g~i~vwd~~~~~~~~~~~~---~~--~v~~~~~s~~~~~l~~~~~d-----g~v~iwd~~~~  112 (424)
                      ++..++.+|.+.      ..+.+||..+.+-......   ..  ........-++.+.+.|+.+     ..+.+||+.+.
T Consensus       175 ~~~iyv~GG~~~~~~~~~~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~~~~lYvfGG~~~~~~~ndv~~yD~~t~  254 (470)
T PLN02193        175 GNKIYSFGGEFTPNQPIDKHLYVFDLETRTWSISPATGDVPHLSCLGVRMVSIGSTLYVFGGRDASRQYNGFYSFDTTTN  254 (470)
T ss_pred             CCEEEEECCcCCCCCCeeCcEEEEECCCCEEEeCCCCCCCCCCcccceEEEEECCEEEEECCCCCCCCCccEEEEECCCC
Confidence            455566666421      2467778776544322111   11  11111122256667777654     35888998776


Q ss_pred             ceee--eec--cccCCeEEEEEccCCcEEEEeeCCC-----cEEEEeCCcccchhcccccccceEEe---ecCCcCceeE
Q 014475          113 RLLK--KWH--AHYRAVTCLVFSEDGSFLISGSEDG-----CVRIWSLLTVFEECESQRASHLYLHS---FTGHTLRITD  180 (424)
Q Consensus       113 ~~~~--~~~--~~~~~i~~~~~~~~~~~l~s~~~dg-----~i~iwd~~~~~~~~~~~~~~~~~~~~---~~~~~~~i~~  180 (424)
                      +-..  ...  .....-.++.. -+++.++.|+.++     .+..||+.+..         ...+..   ....... ..
T Consensus       255 ~W~~l~~~~~~P~~R~~h~~~~-~~~~iYv~GG~~~~~~~~~~~~yd~~t~~---------W~~~~~~~~~~~~R~~-~~  323 (470)
T PLN02193        255 EWKLLTPVEEGPTPRSFHSMAA-DEENVYVFGGVSATARLKTLDSYNIVDKK---------WFHCSTPGDSFSIRGG-AG  323 (470)
T ss_pred             EEEEcCcCCCCCCCccceEEEE-ECCEEEEECCCCCCCCcceEEEEECCCCE---------EEeCCCCCCCCCCCCC-cE
Confidence            4322  110  01111112222 2566777777543     35667775421         111000   0000111 11


Q ss_pred             EEEEEcCceeEEEEEeCC----CcEEEEecCCCceeeeeec-----CcceeEEEECCCCCEEEEEeCC------------
Q 014475          181 IVIGYGGVSATIVSASED----RTCKVWSLLKGRLLRNIVF-----PSVIDAIALDPAEHVFYAGSRD------------  239 (424)
Q Consensus       181 ~~~~~~~~~~~l~~~~~d----~~v~iwd~~~~~~~~~~~~-----~~~i~~~~~~~~~~~l~~~~~d------------  239 (424)
                      ++. .++  +.++.++.+    ..+.+||+.+.+-...-..     +....+++ .-++++++.|+..            
T Consensus       324 ~~~-~~g--kiyviGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~~~  399 (470)
T PLN02193        324 LEV-VQG--KVWVVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSERSVFASA-AVGKHIVIFGGEIAMDPLAHVGPGQ  399 (470)
T ss_pred             EEE-ECC--cEEEEECCCCCccCceEEEECCCCEEEEeccCCCCCCCcceeEEE-EECCEEEEECCccCCccccccCccc
Confidence            222 233  566666544    4588999887654332111     11111222 2256677777642            


Q ss_pred             --CcEEEEEcCCCC
Q 014475          240 --GSIYIAALNAES  251 (424)
Q Consensus       240 --g~i~i~d~~~~~  251 (424)
                        ..+.+||+.+..
T Consensus       400 ~~ndv~~~D~~t~~  413 (470)
T PLN02193        400 LTDGTFALDTETLQ  413 (470)
T ss_pred             eeccEEEEEcCcCE
Confidence              247788887653

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=85.39  E-value=20  Score=35.21  Aligned_cols=71  Identities=14%  Similarity=0.237  Sum_probs=45.2

Q ss_pred             eEEecceeecCCCccccCCCCceeEEEEECCCCceeeeecCCCCeeEEEECCCCCEEEEecCCCcEEEEEccCccee
Q 014475           39 LACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLL  115 (424)
Q Consensus        39 v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~  115 (424)
                      ++++.  -+|.++.++.+..| |.|.++++.............|-..+.|...|  |++++.|..+.-|. +.|...
T Consensus        17 ~~aiq--shp~~~s~v~~~~d-~si~lfn~~~r~qski~~~~~p~~nlv~tnhg--l~~~tsdrr~la~~-~dgvvq   87 (1636)
T KOG3616|consen   17 TTAIQ--SHPGGQSFVLAHQD-GSIILFNFIPRRQSKICEEAKPKENLVFTNHG--LVTATSDRRALAWK-EDGVVQ   87 (1636)
T ss_pred             eeeee--ecCCCceEEEEecC-CcEEEEeecccchhhhhhhcCCccceeeeccc--eEEEeccchhheee-ccCcch
Confidence            45555  77999999999998 99999998765442222223344555565444  55555666777775 344333

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	424
3sfz_A	1249	Crystal Structure Of Full-Length Murine Apaf-1 Leng		7e-14
3shf_A	1256	Crystal Structure Of The R265s Mutant Of Full-Lengt		7e-14
2ovp_B	445	Structure Of The Skp1-Fbw7 Complex Length = 445		3e-13
2ymu_A	577	Structure Of A Highly Repetitive Propeller Structur		5e-13
2cnx_A	315	Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.		3e-12
2co0_A	315	Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs		4e-12
2xl2_A	334	Wdr5 In Complex With An Rbbp5 Peptide Recruited To		6e-12
3emh_A	318	Structural Basis Of Wdr5-Mll Interaction Length = 3		7e-12
2gnq_A	336	Structure Of Wdr5 Length = 336		8e-12
2h68_A	312	Histone H3 Recognition And Presentation By The Wdr5		9e-12
2g99_A	308	Structural Basis For The Specific Recognition Of Me		1e-11
4a7j_A	318	Symmetric Dimethylation Of H3 Arginine 2 Is A Novel		1e-11
2h9l_A	329	Wdr5delta23 Length = 329		1e-11
3smr_A	312	Crystal Structure Of Human Wd Repeat Domain 5 With		1e-11
2h9m_A	313	Wdr5 In Complex With Unmodified H3k4 Peptide Length		1e-11
2h13_A	317	Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length		1e-11
3psl_A	318	Fine-Tuning The Stimulation Of Mll1 Methyltransfera		1e-11
2g9a_A	311	Structural Basis For The Specific Recognition Of Me		1e-11
3n0e_A	315	Crystal Structure Of Wdr5 Mutant (W330y) Length = 3		2e-11
3n0d_A	315	Crystal Structure Of Wdr5 Mutant (W330f) Length = 3		2e-11
3mxx_A	315	Crystal Structure Of Wdr5 Mutant (S62a) Length = 31		2e-11
3dm0_A	694	Maltose Binding Protein Fusion With Rack1 From A. T		2e-10
4aow_A	340	Crystal Structure Of The Human Rack1 Protein At A R		2e-09
2zkq_a	317	Structure Of A Mammalian Ribosomal 40s Subunit With		2e-09
3iza_B	1263	Structure Of An Apoptosome-Procaspase-9 Card Comple		8e-09
1vyh_C	410	Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410		8e-09
1vyh_C	410	Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410		3e-04
3zey_7	318	High-resolution Cryo-electron Microscopy Structure		1e-07
3izb_a	319	Localization Of The Small Subunit Ribosomal Protein		1e-07
3jyv_R	313	Structure Of The 40s Rrna And Proteins And PE TRNA		2e-07
3rfg_A	319	Crystal Structure Of The Yeast Rack1 Dimer In Space		2e-07
1erj_A	393	Crystal Structure Of The C-Terminal Wd40 Domain Of		3e-07
1nex_B	464	Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Comp		4e-07
3mks_B	464	Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH		4e-07
3frx_A	319	Crystal Structure Of The Yeast Orthologue Of Rack1,		5e-07
2yno_A	310	Yeast Betaprime Cop 1-304h6 Length = 310		5e-07
2ynn_A	304	Yeast Betaprime Cop 1-304 With Ktktn Motif Length =		5e-07
1trj_A	314	Homology Model Of Yeast Rack1 Protein Fitted Into 1		5e-07
3rfh_A	319	Crystal Structure Of The Yeast Rack1 Dimer In Space		6e-07
1p22_A	435	Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex		7e-07
3ow8_A	321	Crystal Structure Of The Wd Repeat-Containing Prote		1e-06
3ow8_A	321	Crystal Structure Of The Wd Repeat-Containing Prote		6e-05
3ow8_A	321	Crystal Structure Of The Wd Repeat-Containing Prote		1e-04
2ynp_A	604	Yeast Betaprime Cop 1-604 With Ktktn Motif Length =		1e-06
3mkq_A	814	Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subco		2e-06
2xzm_R	343	Crystal Structure Of The Eukaryotic 40s Ribosomal S		8e-06
2pbi_B	354	The Multifunctional Nature Of Gbeta5RGS9 REVEALED F		2e-05
4g56_B	357	Crystal Structure Of Full Length Prmt5/mep50 Comple		4e-05
1gxr_A	337	Wd40 Region Of Human Groucho/tle1 Length = 337		5e-05
1r5m_A	425	Crystal Structure Of The C-Terminal Wd40 Domain Of		9e-05
3iz6_a	380	Localization Of The Small Subunit Ribosomal Protein		1e-04

>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249

Iteration: 1
 Score = 75.1 bits (183), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 57/225 (25%), Positives = 104/225 (46%), Gaps = 26/225 (11%)
Query: 74   EVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSED 133
            ++  LP   +     + H  Y+A G + G I + E+ + R+      H +AV  + F+ D
Sbjct: 955  QIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTAD 1014
Query: 134  GSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIV 193
            G  LIS SED  +++W+          Q   +++L +   H   + D  +      + ++
Sbjct: 1015 GKTLISSSEDSVIQVWNW---------QTGDYVFLQA---HQETVKDFRLLQ---DSRLL 1059
Query: 194  SASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESP 252
            S S D T KVW+++ GR+ R+       + + A+      F + S D +  I + +  SP
Sbjct: 1060 SWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSP 1119
Query: 253  STSSYGMHIIGSLSDHSKAVTCLAYS-TGDLLISGSEDGMVRVWD 296
                     +  L  H+  V C A+S  G LL +G ++G +R+W+
Sbjct: 1120 ---------LHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWN 1155

>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256

Iteration: 1
 Score = 75.1 bits (183), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 57/225 (25%), Positives = 104/225 (46%), Gaps = 26/225 (11%)
Query: 74   EVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSED 133
            ++  LP   +     + H  Y+A G + G I + E+ + R+      H +AV  + F+ D
Sbjct: 962  QIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTAD 1021
Query: 134  GSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIV 193
            G  LIS SED  +++W+          Q   +++L +   H   + D  +      + ++
Sbjct: 1022 GKTLISSSEDSVIQVWNW---------QTGDYVFLQA---HQETVKDFRLLQ---DSRLL 1066
Query: 194  SASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESP 252
            S S D T KVW+++ GR+ R+       + + A+      F + S D +  I + +  SP
Sbjct: 1067 SWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSP 1126
Query: 253  STSSYGMHIIGSLSDHSKAVTCLAYS-TGDLLISGSEDGMVRVWD 296
                     +  L  H+  V C A+S  G LL +G ++G +R+W+
Sbjct: 1127 ---------LHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWN 1162

>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex Length = 445

Iteration: 1
 Score = 73.2 bits (178), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 51/214 (23%), Positives = 102/214 (47%), Gaps = 25/214 (11%)
Query: 91  HGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWS 150
           H   +  G +   + +W++ +G+ L     H  AV C+ +  DG  ++SG+ D  V++W 
Sbjct: 208 HEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWD 265
Query: 151 LLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGR 210
             T  E C         LH+  GHT R+    + + G+   +VS S D + +VW +  G 
Sbjct: 266 PET--ETC---------LHTLQGHTNRVYS--LQFDGIH--VVSGSLDTSIRVWDVETGN 310
Query: 211 LLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSK 270
            +  +     + +  ++  +++  +G+ D ++ I  +       +   +  +   + H  
Sbjct: 311 CIHTLTGHQSLTS-GMELKDNILVSGNADSTVKIWDIK------TGQCLQTLQGPNKHQS 363
Query: 271 AVTCLAYSTGDLLISGSEDGMVRVWDPITHNIVR 304
           AVTCL ++  + +I+ S+DG V++WD  T   +R
Sbjct: 364 AVTCLQFNK-NFVITSSDDGTVKLWDLKTGEFIR 396

>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577

Iteration: 1
 Score = 72.0 bits (175), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 56/219 (25%), Positives = 103/219 (47%), Gaps = 28/219 (12%)
Query: 80  AEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLIS 139
           +  ++ +A +  G  IA       + +W   +G+LL+    H  +V  + FS DG  + S
Sbjct: 16  SSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDGQTIAS 74
Query: 140 GSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDR 199
            S+D  V++W+           R   L L + TGH+  +  +     G   TI SAS+D+
Sbjct: 75  ASDDKTVKLWN-----------RNGQL-LQTLTGHSSSVRGVAFSPDG--QTIASASDDK 120
Query: 200 TCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYG 258
           T K+W+   G+LL+ +    S +  +A  P      + S D ++ +   N +        
Sbjct: 121 TVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQ-------- 171
Query: 259 MHIIGSLSDHSKAVTCLAYS-TGDLLISGSEDGMVRVWD 296
             ++ +L+ HS +V  +A+S  G  + S S+D  V++W+
Sbjct: 172 --LLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN 208

>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315

Iteration: 1
 Score = 69.7 bits (169), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 56/230 (24%), Positives = 97/230 (42%), Gaps = 26/230 (11%)
Query: 83  IKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSE 142
           I  +A +S    +        + +W+V+SG+ LK    H   V C  F+   + ++SGS 
Sbjct: 71  ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 130
Query: 143 DGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCK 202
           D  VRIW + T            + L +   H+  ++ +     G  + IVS+S D  C+
Sbjct: 131 DESVRIWDVKT-----------GMCLKTLPAHSDPVSAVHFNRDG--SLIVSSSYDGLCR 177
Query: 203 VWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGM-HI 261
           +W    G+ L+ +        I  D     F   S +G   +AA    +     Y     
Sbjct: 178 IWDTASGQCLKTL--------IDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKC 229
Query: 262 IGSLSDHSKAVTCL----AYSTGDLLISGSEDGMVRVWDPITHNIVRMFR 307
           + + + H     C+    + + G  ++SGSED MV +W+  T  IV+  +
Sbjct: 230 LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQKLQ 279

>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315

Iteration: 1
 Score = 69.3 bits (168), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 56/230 (24%), Positives = 96/230 (41%), Gaps = 26/230 (11%)
Query: 83  IKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSE 142
           I  +A +S    +        + +W+V+SG+ LK    H   V C  F+   + ++SGS 
Sbjct: 71  ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 130
Query: 143 DGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCK 202
           D  VRIW + T            + L +   H+  ++ +     G  + IVS+S D  C+
Sbjct: 131 DESVRIWDVKT-----------GMCLKTLPAHSDPVSAVHFNRDG--SLIVSSSYDGLCR 177
Query: 203 VWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGM-HI 261
           +W    G+ L+ +        I  D     F   S +G   +AA          Y     
Sbjct: 178 IWDTASGQCLKTL--------IDDDNPPVSFVKFSPNGKYILAATLDNDLKLWDYSKGKC 229
Query: 262 IGSLSDHSKAVTCL----AYSTGDLLISGSEDGMVRVWDPITHNIVRMFR 307
           + + + H     C+    + + G  ++SGSED MV +W+  T  IV+  +
Sbjct: 230 LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQKLQ 279

>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334

Iteration: 1
 Score = 68.6 bits (166), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 56/230 (24%), Positives = 98/230 (42%), Gaps = 26/230 (11%)
Query: 83  IKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSE 142
           I  +A +S    +        + +W+V+SG+ LK    H   V C  F+   + ++SGS 
Sbjct: 90  ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 149
Query: 143 DGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCK 202
           D  VRIW + T   +C         L +   H+  ++ +     G  + IVS+S D  C+
Sbjct: 150 DESVRIWDVKT--GKC---------LKTLPAHSDPVSAVHFNRDG--SLIVSSSYDGLCR 196
Query: 203 VWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGM-HI 261
           +W    G+ L+ +        I  D     F   S +G   +AA    +     Y     
Sbjct: 197 IWDTASGQCLKTL--------IDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKC 248
Query: 262 IGSLSDHSKAVTCL----AYSTGDLLISGSEDGMVRVWDPITHNIVRMFR 307
           + + + H     C+    + + G  ++SGSED +V +W+  T  IV+  +
Sbjct: 249 LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ 298

>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318

Iteration: 1
 Score = 68.6 bits (166), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 56/230 (24%), Positives = 98/230 (42%), Gaps = 26/230 (11%)
Query: 83  IKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSE 142
           I  +A +S    +        + +W+V+SG+ LK    H   V C  F+   + ++SGS 
Sbjct: 74  ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 133
Query: 143 DGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCK 202
           D  VRIW + T   +C         L +   H+  ++ +     G  + IVS+S D  C+
Sbjct: 134 DESVRIWDVKT--GKC---------LKTLPAHSDPVSAVHFNRDG--SLIVSSSYDGLCR 180
Query: 203 VWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGM-HI 261
           +W    G+ L+ +        I  D     F   S +G   +AA    +     Y     
Sbjct: 181 IWDTASGQCLKTL--------IDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKC 232
Query: 262 IGSLSDHSKAVTCL----AYSTGDLLISGSEDGMVRVWDPITHNIVRMFR 307
           + + + H     C+    + + G  ++SGSED +V +W+  T  IV+  +
Sbjct: 233 LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ 282

>pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336

Iteration: 1
 Score = 68.2 bits (165), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 56/230 (24%), Positives = 98/230 (42%), Gaps = 26/230 (11%)
Query: 83  IKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSE 142
           I  +A +S    +        + +W+V+SG+ LK    H   V C  F+   + ++SGS 
Sbjct: 92  ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 151
Query: 143 DGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCK 202
           D  VRIW + T   +C         L +   H+  ++ +     G  + IVS+S D  C+
Sbjct: 152 DESVRIWDVKT--GKC---------LKTLPAHSDPVSAVHFNRDG--SLIVSSSYDGLCR 198
Query: 203 VWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGM-HI 261
           +W    G+ L+ +        I  D     F   S +G   +AA    +     Y     
Sbjct: 199 IWDTASGQCLKTL--------IDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKC 250
Query: 262 IGSLSDHSKAVTCL----AYSTGDLLISGSEDGMVRVWDPITHNIVRMFR 307
           + + + H     C+    + + G  ++SGSED +V +W+  T  IV+  +
Sbjct: 251 LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ 300

>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312

Iteration: 1
 Score = 68.2 bits (165), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 56/230 (24%), Positives = 98/230 (42%), Gaps = 26/230 (11%)
Query: 83  IKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSE 142
           I  +A +S    +        + +W+V+SG+ LK    H   V C  F+   + ++SGS 
Sbjct: 68  ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 127
Query: 143 DGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCK 202
           D  VRIW + T   +C         L +   H+  ++ +     G  + IVS+S D  C+
Sbjct: 128 DESVRIWDVKT--GKC---------LKTLPAHSDPVSAVHFNRDG--SLIVSSSYDGLCR 174
Query: 203 VWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGM-HI 261
           +W    G+ L+ +        I  D     F   S +G   +AA    +     Y     
Sbjct: 175 IWDTASGQCLKTL--------IDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKC 226
Query: 262 IGSLSDHSKAVTCL----AYSTGDLLISGSEDGMVRVWDPITHNIVRMFR 307
           + + + H     C+    + + G  ++SGSED +V +W+  T  IV+  +
Sbjct: 227 LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ 276

>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308

Iteration: 1
 Score = 68.2 bits (165), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 56/230 (24%), Positives = 98/230 (42%), Gaps = 26/230 (11%)
Query: 83  IKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSE 142
           I  +A +S    +        + +W+V+SG+ LK    H   V C  F+   + ++SGS 
Sbjct: 64  ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 123
Query: 143 DGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCK 202
           D  VRIW + T   +C         L +   H+  ++ +     G  + IVS+S D  C+
Sbjct: 124 DESVRIWDVKT--GKC---------LKTLPAHSDPVSAVHFNRDG--SLIVSSSYDGLCR 170
Query: 203 VWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGM-HI 261
           +W    G+ L+ +        I  D     F   S +G   +AA    +     Y     
Sbjct: 171 IWDTASGQCLKTL--------IDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKC 222
Query: 262 IGSLSDHSKAVTCL----AYSTGDLLISGSEDGMVRVWDPITHNIVRMFR 307
           + + + H     C+    + + G  ++SGSED +V +W+  T  IV+  +
Sbjct: 223 LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ 272

>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318

Iteration: 1
 Score = 67.8 bits (164), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 56/230 (24%), Positives = 98/230 (42%), Gaps = 26/230 (11%)
Query: 83  IKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSE 142
           I  +A +S    +        + +W+V+SG+ LK    H   V C  F+   + ++SGS 
Sbjct: 74  ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 133
Query: 143 DGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCK 202
           D  VRIW + T   +C         L +   H+  ++ +     G  + IVS+S D  C+
Sbjct: 134 DESVRIWDVKT--GKC---------LKTLPAHSDPVSAVHFNRDG--SLIVSSSYDGLCR 180
Query: 203 VWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGM-HI 261
           +W    G+ L+ +        I  D     F   S +G   +AA    +     Y     
Sbjct: 181 IWDTASGQCLKTL--------IDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKC 232
Query: 262 IGSLSDHSKAVTCL----AYSTGDLLISGSEDGMVRVWDPITHNIVRMFR 307
           + + + H     C+    + + G  ++SGSED +V +W+  T  IV+  +
Sbjct: 233 LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ 282

>pdb|2H9L|A Chain A, Wdr5delta23 Length = 329

Iteration: 1
 Score = 67.8 bits (164), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 56/230 (24%), Positives = 98/230 (42%), Gaps = 26/230 (11%)
Query: 83  IKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSE 142
           I  +A +S    +        + +W+V+SG+ LK    H   V C  F+   + ++SGS 
Sbjct: 85  ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 144
Query: 143 DGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCK 202
           D  VRIW + T   +C         L +   H+  ++ +     G  + IVS+S D  C+
Sbjct: 145 DESVRIWDVKT--GKC---------LKTLPAHSDPVSAVHFNRDG--SLIVSSSYDGLCR 191
Query: 203 VWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGM-HI 261
           +W    G+ L+ +        I  D     F   S +G   +AA    +     Y     
Sbjct: 192 IWDTASGQCLKTL--------IDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKC 243
Query: 262 IGSLSDHSKAVTCL----AYSTGDLLISGSEDGMVRVWDPITHNIVRMFR 307
           + + + H     C+    + + G  ++SGSED +V +W+  T  IV+  +
Sbjct: 244 LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ 293

>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312

Iteration: 1
 Score = 67.8 bits (164), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 56/230 (24%), Positives = 98/230 (42%), Gaps = 26/230 (11%)
Query: 83  IKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSE 142
           I  +A +S    +        + +W+V+SG+ LK    H   V C  F+   + ++SGS 
Sbjct: 68  ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 127
Query: 143 DGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCK 202
           D  VRIW + T   +C         L +   H+  ++ +     G  + IVS+S D  C+
Sbjct: 128 DESVRIWDVKT--GKC---------LKTLPAHSDPVSAVHFNRDG--SLIVSSSYDGLCR 174
Query: 203 VWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGM-HI 261
           +W    G+ L+ +        I  D     F   S +G   +AA    +     Y     
Sbjct: 175 IWDTASGQCLKTL--------IDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKC 226
Query: 262 IGSLSDHSKAVTCL----AYSTGDLLISGSEDGMVRVWDPITHNIVRMFR 307
           + + + H     C+    + + G  ++SGSED +V +W+  T  IV+  +
Sbjct: 227 LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ 276

>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313

Iteration: 1
 Score = 67.8 bits (164), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 56/230 (24%), Positives = 98/230 (42%), Gaps = 26/230 (11%)
Query: 83  IKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSE 142
           I  +A +S    +        + +W+V+SG+ LK    H   V C  F+   + ++SGS 
Sbjct: 69  ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 128
Query: 143 DGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCK 202
           D  VRIW + T   +C         L +   H+  ++ +     G  + IVS+S D  C+
Sbjct: 129 DESVRIWDVKT--GKC---------LKTLPAHSDPVSAVHFNRDG--SLIVSSSYDGLCR 175
Query: 203 VWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGM-HI 261
           +W    G+ L+ +        I  D     F   S +G   +AA    +     Y     
Sbjct: 176 IWDTASGQCLKTL--------IDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKC 227
Query: 262 IGSLSDHSKAVTCL----AYSTGDLLISGSEDGMVRVWDPITHNIVRMFR 307
           + + + H     C+    + + G  ++SGSED +V +W+  T  IV+  +
Sbjct: 228 LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ 277

>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317

Iteration: 1
 Score = 67.8 bits (164), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 56/230 (24%), Positives = 98/230 (42%), Gaps = 26/230 (11%)
Query: 83  IKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSE 142
           I  +A +S    +        + +W+V+SG+ LK    H   V C  F+   + ++SGS 
Sbjct: 73  ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 132
Query: 143 DGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCK 202
           D  VRIW + T   +C         L +   H+  ++ +     G  + IVS+S D  C+
Sbjct: 133 DESVRIWDVKT--GKC---------LKTLPAHSDPVSAVHFNRDG--SLIVSSSYDGLCR 179
Query: 203 VWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGM-HI 261
           +W    G+ L+ +        I  D     F   S +G   +AA    +     Y     
Sbjct: 180 IWDTASGQCLKTL--------IDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKC 231
Query: 262 IGSLSDHSKAVTCL----AYSTGDLLISGSEDGMVRVWDPITHNIVRMFR 307
           + + + H     C+    + + G  ++SGSED +V +W+  T  IV+  +
Sbjct: 232 LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ 281

>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318

Iteration: 1
 Score = 67.8 bits (164), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 56/230 (24%), Positives = 98/230 (42%), Gaps = 26/230 (11%)
Query: 83  IKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSE 142
           I  +A +S    +        + +W+V+SG+ LK    H   V C  F+   + ++SGS 
Sbjct: 74  ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 133
Query: 143 DGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCK 202
           D  VRIW + T   +C         L +   H+  ++ +     G  + IVS+S D  C+
Sbjct: 134 DESVRIWDVKT--GKC---------LKTLPAHSDPVSAVHFNRDG--SLIVSSSYDGLCR 180
Query: 203 VWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGM-HI 261
           +W    G+ L+ +        I  D     F   S +G   +AA    +     Y     
Sbjct: 181 IWDTASGQCLKTL--------IDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKC 232
Query: 262 IGSLSDHSKAVTCL----AYSTGDLLISGSEDGMVRVWDPITHNIVRMFR 307
           + + + H     C+    + + G  ++SGSED +V +W+  T  IV+  +
Sbjct: 233 LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ 282

>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311

Iteration: 1
 Score = 67.4 bits (163), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 56/230 (24%), Positives = 98/230 (42%), Gaps = 26/230 (11%)
Query: 83  IKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSE 142
           I  +A +S    +        + +W+V+SG+ LK    H   V C  F+   + ++SGS 
Sbjct: 67  ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 126
Query: 143 DGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCK 202
           D  VRIW + T   +C         L +   H+  ++ +     G  + IVS+S D  C+
Sbjct: 127 DESVRIWDVKT--GKC---------LKTLPAHSDPVSAVHFNRDG--SLIVSSSYDGLCR 173
Query: 203 VWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGM-HI 261
           +W    G+ L+ +        I  D     F   S +G   +AA    +     Y     
Sbjct: 174 IWDTASGQCLKTL--------IDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKC 225
Query: 262 IGSLSDHSKAVTCL----AYSTGDLLISGSEDGMVRVWDPITHNIVRMFR 307
           + + + H     C+    + + G  ++SGSED +V +W+  T  IV+  +
Sbjct: 226 LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ 275

>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315

Iteration: 1
 Score = 67.4 bits (163), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 56/230 (24%), Positives = 98/230 (42%), Gaps = 26/230 (11%)
Query: 83  IKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSE 142
           I  +A +S    +        + +W+V+SG+ LK    H   V C  F+   + ++SGS 
Sbjct: 71  ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 130
Query: 143 DGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCK 202
           D  VRIW + T   +C         L +   H+  ++ +     G  + IVS+S D  C+
Sbjct: 131 DESVRIWDVKT--GKC---------LKTLPAHSDPVSAVHFNRDG--SLIVSSSYDGLCR 177
Query: 203 VWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGM-HI 261
           +W    G+ L+ +        I  D     F   S +G   +AA    +     Y     
Sbjct: 178 IWDTASGQCLKTL--------IDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKC 229
Query: 262 IGSLSDHSKAVTCL----AYSTGDLLISGSEDGMVRVWDPITHNIVRMFR 307
           + + + H     C+    + + G  ++SGSED +V +W+  T  IV+  +
Sbjct: 230 LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ 279

>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315

Iteration: 1
 Score = 67.4 bits (163), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 56/230 (24%), Positives = 98/230 (42%), Gaps = 26/230 (11%)
Query: 83  IKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSE 142
           I  +A +S    +        + +W+V+SG+ LK    H   V C  F+   + ++SGS 
Sbjct: 71  ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 130
Query: 143 DGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCK 202
           D  VRIW + T   +C         L +   H+  ++ +     G  + IVS+S D  C+
Sbjct: 131 DESVRIWDVKT--GKC---------LKTLPAHSDPVSAVHFNRDG--SLIVSSSYDGLCR 177
Query: 203 VWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGM-HI 261
           +W    G+ L+ +        I  D     F   S +G   +AA    +     Y     
Sbjct: 178 IWDTASGQCLKTL--------IDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKC 229
Query: 262 IGSLSDHSKAVTCL----AYSTGDLLISGSEDGMVRVWDPITHNIVRMFR 307
           + + + H     C+    + + G  ++SGSED +V +W+  T  IV+  +
Sbjct: 230 LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ 279

>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315

Iteration: 1
 Score = 67.0 bits (162), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 56/230 (24%), Positives = 98/230 (42%), Gaps = 26/230 (11%)
Query: 83  IKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSE 142
           I  +A +S    +        + +W+V+SG+ LK    H   V C  F+   + ++SGS 
Sbjct: 71  ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 130
Query: 143 DGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCK 202
           D  VRIW + T   +C         L +   H+  ++ +     G  + IVS+S D  C+
Sbjct: 131 DESVRIWDVKT--GKC---------LKTLPAHSDPVSAVHFNRDG--SLIVSSSYDGLCR 177
Query: 203 VWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGM-HI 261
           +W    G+ L+ +        I  D     F   S +G   +AA    +     Y     
Sbjct: 178 IWDTASGQCLKTL--------IDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKC 229
Query: 262 IGSLSDHSKAVTCL----AYSTGDLLISGSEDGMVRVWDPITHNIVRMFR 307
           + + + H     C+    + + G  ++SGSED +V +W+  T  IV+  +
Sbjct: 230 LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ 279

>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana Length = 694

Iteration: 1
 Score = 63.9 bits (154), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 49/227 (21%), Positives = 103/227 (45%), Gaps = 19/227 (8%)
Query: 83  IKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSE 142
           ++ +  +S G +   G   G++ +W++A+G   +++  H + V  + FS D   ++S S 
Sbjct: 433 VEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASR 492
Query: 143 DGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCK 202
           D  +++W+ L    EC+     +       GH   ++ +      +  TIVSAS D+T K
Sbjct: 493 DRTIKLWNTLG---ECK-----YTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVK 544
Query: 203 VWSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHI 261
           VW+L   +L   +      +  +A+ P   +  +G +DG + +  L AE     S     
Sbjct: 545 VWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDL-AEGKKLYSL---- 599
Query: 262 IGSLSDHSKAVTCLAYSTGDLLISGSEDGMVRVWDPITHNIVRMFRL 308
                + +  +  L +S     +  + +  +++WD  + +IV   ++
Sbjct: 600 -----EANSVIHALCFSPNRYWLCAATEHGIKIWDLESKSIVEDLKV 641

>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution Of 2.45 Angstrom Length = 340

Iteration: 1
 Score = 60.1 bits (144), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 60/255 (23%), Positives = 102/255 (40%), Gaps = 52/255 (20%)
Query: 83  IKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSE 142
           +  +  +S G +   G   G + +W++ +G   +++  H + V  + FS D   ++SGS 
Sbjct: 89  VSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSR 148
Query: 143 DGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCK 202
           D  +++W+ L V   C+       Y      H+  ++ +       +  IVS   D+  K
Sbjct: 149 DKTIKLWNTLGV---CK-------YTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVK 198
Query: 203 VWSLLKGRLLRN-IVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALN------------- 248
           VW+L   +L  N I     ++ + + P   +  +G +DG   +  LN             
Sbjct: 199 VWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDI 258
Query: 249 ---------------AESPSTSSY---GMHIIGSL-----SDHSKA----VTCLAYST-G 280
                          A  PS   +   G  I+  L     S  SKA     T LA+S  G
Sbjct: 259 INALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADG 318
Query: 281 DLLISGSEDGMVRVW 295
             L +G  D +VRVW
Sbjct: 319 QTLFAGYTDNLVRVW 333

>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 317

Iteration: 1
 Score = 60.1 bits (144), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 59/255 (23%), Positives = 101/255 (39%), Gaps = 52/255 (20%)
Query: 83  IKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSE 142
           +  +  +S G +   G   G + +W++ +G   +++  H + V  + FS D   ++SGS 
Sbjct: 66  VSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSR 125
Query: 143 DGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCK 202
           D  +++W+ L V +          Y      H+  ++ +       +  IVS   D+  K
Sbjct: 126 DKTIKLWNTLGVCK----------YTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVK 175
Query: 203 VWSLLKGRLLRN-IVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALN------------- 248
           VW+L   +L  N I     ++ + + P   +  +G +DG   +  LN             
Sbjct: 176 VWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDI 235
Query: 249 ---------------AESPSTSSY---GMHIIGSL-----SDHSKA----VTCLAYST-G 280
                          A  PS   +   G  I+  L     S  SKA     T LA+S  G
Sbjct: 236 INALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADG 295
Query: 281 DLLISGSEDGMVRVW 295
             L +G  D +VRVW
Sbjct: 296 QTLFAGYTDNLVRVW 310

>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410

Iteration: 1
 Score = 58.2 bits (139), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 50/218 (22%), Positives = 98/218 (44%), Gaps = 24/218 (11%)
Query: 91  HGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWS 150
           +G +I    +   I MWEV +G  +K +  H   V  +  ++DG+ + S S D  VR+W 
Sbjct: 203 NGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWV 262
Query: 151 LLTVFEECESQRASHLYL---------HSFTGHTLRITDIVIGYGGVSATIVSASEDRTC 201
           + T  +EC+++   H ++          S++  +          G     ++S S D+T 
Sbjct: 263 VAT--KECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTI 320
Query: 202 KVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSY-GM 259
           K+W +  G  L  +V   + +  +       +F++G   G   ++  + ++     Y   
Sbjct: 321 KMWDVSTGMCLMTLVGHDNWVRGV-------LFHSG---GKFILSCADDKTLRVWDYKNK 370
Query: 260 HIIGSLSDHSKAVTCLAY-STGDLLISGSEDGMVRVWD 296
             + +L+ H   VT L +  T   +++GS D  V+VW+
Sbjct: 371 RCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 408

>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 34/140 (24%), Positives = 63/140 (45%), Gaps = 13/140 (9%)
Query: 169 HSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALD 227
           ++ +GH   +T ++  +  V + +VSASED T KVW    G   R +      +  I+ D
Sbjct: 102 YALSGHRSPVTRVI--FHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFD 159
Query: 228 PAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLA-YSTGDLLISG 286
            +  +  + S D +I +             G   I ++  H   V+ ++    GD ++S 
Sbjct: 160 HSGKLLASCSADMTIKLWDFQ---------GFECIRTMHGHDHNVSSVSIMPNGDHIVSA 210
Query: 287 SEDGMVRVWDPITHNIVRMF 306
           S D  +++W+  T   V+ F
Sbjct: 211 SRDKTIKMWEVQTGYCVKTF 230

>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 318

Iteration: 1
 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 58/239 (24%), Positives = 96/239 (40%), Gaps = 21/239 (8%)
Query: 62  SILYWSWSKPQVEVKSLP-AEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWH- 119
           S+  W+    Q + K L   + +  +A +     I  GG+   + +W V  G  +     
Sbjct: 90  SLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDNRQIVSGGRDNALRVWNV-KGECMHTLSR 148
Query: 120 -AHYRAVTCLVFSE--DGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTL 176
            AH   V+C+ FS   D   ++SG  D  V++W L           A+   +    GHT 
Sbjct: 149 GAHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWDL-----------ATGRLVTDLKGHTN 197
Query: 177 RITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAG 236
            +T + +   G  +   S+ +D   ++W L KG  L  +   + I+ I   P  +   A 
Sbjct: 198 YVTSVTVSPDG--SLCASSDKDGVARLWDLTKGEALSEMAAGAPINQICFSPNRYWMCAA 255
Query: 237 SRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTGDLLISGSEDGMVRVW 295
           +  G I I  L  +         H  GS     + V+    + G  L SG  D ++RVW
Sbjct: 256 TEKG-IRIFDLENKDIIVELAPEH-QGSKKIVPECVSIAWSADGSTLYSGYTDNVIRVW 312

>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 319

Iteration: 1
 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 58/275 (21%), Positives = 108/275 (39%), Gaps = 67/275 (24%)
Query: 82  PIKPIAANSH----------GTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFS 131
           P++    +SH          G Y         + +W+VA+G   +++  H   V  +   
Sbjct: 57  PVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDID 116
Query: 132 EDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVI----GYGG 187
           +  S +ISGS D  +++W   T+  +C         L +  GH   ++ + +        
Sbjct: 117 KKASMIISGSRDKTIKVW---TIKGQC---------LATLLGHNDWVSQVRVVPNEKADD 164
Query: 188 VSATIVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYAGSRDGSIYIAA 246
            S TI+SA  D+  K W+L + ++  + +   S I+ +   P   +  +  +DG I +  
Sbjct: 165 DSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWN 224
Query: 247 LNAE-----------------SP------STSSYGMHIIG------------SLSDHSKA 271
           L A+                 SP      + ++ G+ +                + +SKA
Sbjct: 225 LAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKA 284
Query: 272 ----VTCLAYST-GDLLISGSEDGMVRVWDPITHN 301
                  LA+S  G  L +G  D ++RVW  +T N
Sbjct: 285 AEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMTAN 319

>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 313

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 58/275 (21%), Positives = 108/275 (39%), Gaps = 67/275 (24%)
Query: 82  PIKPIAANSH----------GTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFS 131
           P++    +SH          G Y         + +W+VA+G   +++  H   V  +   
Sbjct: 51  PVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDID 110
Query: 132 EDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVI----GYGG 187
           +  S +ISGS D  +++W   T+  +C         L +  GH   ++ + +        
Sbjct: 111 KKASMIISGSRDKTIKVW---TIKGQC---------LATLLGHNDWVSQVRVVPNEKADD 158
Query: 188 VSATIVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYAGSRDGSIYIAA 246
            S TI+SA  D+  K W+L + ++  + +   S I+ +   P   +  +  +DG I +  
Sbjct: 159 DSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWN 218
Query: 247 LNAE-----------------SP------STSSYGMHIIG------------SLSDHSKA 271
           L A+                 SP      + ++ G+ +                + +SKA
Sbjct: 219 LAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKA 278
Query: 272 ----VTCLAYST-GDLLISGSEDGMVRVWDPITHN 301
                  LA+S  G  L +G  D ++RVW  +T N
Sbjct: 279 AEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMTAN 313

>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P63 Length = 319

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 58/275 (21%), Positives = 108/275 (39%), Gaps = 67/275 (24%)
Query: 82  PIKPIAANSH----------GTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFS 131
           P++    +SH          G Y         + +W+VA+G   +++  H   V  +   
Sbjct: 57  PVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDID 116
Query: 132 EDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVI----GYGG 187
           +  S +ISGS D  +++W   T+  +C         L +  GH   ++ + +        
Sbjct: 117 KKASMIISGSRDKTIKVW---TIKGQC---------LATLLGHNDWVSQVRVVPNEKADD 164
Query: 188 VSATIVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYAGSRDGSIYIAA 246
            S TI+SA  D+  K W+L + ++  + +   S I+ +   P   +  +  +DG I +  
Sbjct: 165 DSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWN 224
Query: 247 LNAE-----------------SP------STSSYGMHIIG------------SLSDHSKA 271
           L A+                 SP      + ++ G+ +                + +SKA
Sbjct: 225 LAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKA 284
Query: 272 ----VTCLAYST-GDLLISGSEDGMVRVWDPITHN 301
                  LA+S  G  L +G  D ++RVW  +T N
Sbjct: 285 AEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMTAN 319

>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393

Iteration: 1
 Score = 52.8 bits (125), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 60/255 (23%), Positives = 106/255 (41%), Gaps = 39/255 (15%)
Query: 83  IKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSE 142
           I+ +  +  G ++A G +   I +W++ + +++     H + +  L +   G  L+SGS 
Sbjct: 126 IRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSG 185
Query: 143 DGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYG---GVSATIVSASEDR 199
           D  VRIW L T   +C                TL I D V       G    I + S DR
Sbjct: 186 DRTVRIWDLRT--GQCS--------------LTLSIEDGVTTVAVSPGDGKYIAAGSLDR 229
Query: 200 TCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFY--------AGSRDGSIYIAAL---- 247
             +VW    G L+  +   +       D    V +        +GS D S+ +  L    
Sbjct: 230 AVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNAN 289
Query: 248 ---NAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTGD-LLISGSEDGMVRVWDPITHNIV 303
              ++++P++ +  +  IG    H   V  +A +  D  ++SGS+D  V  WD  + N +
Sbjct: 290 NKSDSKTPNSGTCEVTYIG----HKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPL 345
Query: 304 RMFRLAKGPVNNILV 318
            M +  +  V ++ V
Sbjct: 346 LMLQGHRNSVISVAV 360

>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex Length = 464

Iteration: 1
 Score = 52.8 bits (125), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 47/192 (24%), Positives = 89/192 (46%), Gaps = 38/192 (19%)
Query: 124 AVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVI 183
            +TCL F ++  ++I+G++D  +R++  +           +  +L   +GH   +  +  
Sbjct: 124 VITCLQFEDN--YVITGADDKXIRVYDSI-----------NKKFLLQLSGHDGGVWALKY 170
Query: 184 GYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFP---SVIDAIALDPAEHVFY--AGSR 238
            +GG+   +VS S DRT +VW + KG      VF    S +  + +   +++ Y   GSR
Sbjct: 171 AHGGI---LVSGSTDRTVRVWDIKKGCCTH--VFEGHNSTVRCLDIVEYKNIKYIVTGSR 225
Query: 239 DGSIYIAALNAESP--------------STSSYGMHIIGSLSDHSKAVTCLAYSTGDLLI 284
           D ++++  L  ES                T     + +G L  H  +V  ++   G++++
Sbjct: 226 DNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHXASVRTVS-GHGNIVV 284
Query: 285 SGSEDGMVRVWD 296
           SGS D  + VWD
Sbjct: 285 SGSYDNTLIVWD 296

>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN ALLOSTERIC Inhibitor Scf-I2 Length = 464

Iteration: 1
 Score = 52.4 bits (124), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 47/192 (24%), Positives = 89/192 (46%), Gaps = 38/192 (19%)
Query: 124 AVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVI 183
            +TCL F ++  ++I+G++D  +R++  +           +  +L   +GH   +  +  
Sbjct: 124 VITCLQFEDN--YVITGADDKMIRVYDSI-----------NKKFLLQLSGHDGGVWALKY 170
Query: 184 GYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFP---SVIDAIALDPAEHVFY--AGSR 238
            +GG+   +VS S DRT +VW + KG      VF    S +  + +   +++ Y   GSR
Sbjct: 171 AHGGI---LVSGSTDRTVRVWDIKKGCCTH--VFEGHNSTVRCLDIVEYKNIKYIVTGSR 225
Query: 239 DGSIYIAALNAESP--------------STSSYGMHIIGSLSDHSKAVTCLAYSTGDLLI 284
           D ++++  L  ES                T     + +G L  H  +V  ++   G++++
Sbjct: 226 DNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVS-GHGNIVV 284
Query: 285 SGSEDGMVRVWD 296
           SGS D  + VWD
Sbjct: 285 SGSYDNTLIVWD 296

>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1. Length = 319

Iteration: 1
 Score = 52.4 bits (124), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 58/275 (21%), Positives = 107/275 (38%), Gaps = 67/275 (24%)
Query: 82  PIKPIAANSH----------GTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFS 131
           P++    +SH          G Y         + +W+VA+G   +++  H   V  +   
Sbjct: 57  PVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVXSVDID 116
Query: 132 EDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVI----GYGG 187
           +  S +ISGS D  +++W   T+  +C         L +  GH   ++ + +        
Sbjct: 117 KKASXIISGSRDKTIKVW---TIKGQC---------LATLLGHNDWVSQVRVVPNEKADD 164
Query: 188 VSATIVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYAGSRDGSIYIAA 246
            S TI+SA  D+  K W+L + ++  + +   S I+ +   P   +  +  +DG I +  
Sbjct: 165 DSVTIISAGNDKXVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIXLWN 224
Query: 247 LNAE-----------------SP------STSSYGMHIIG------------SLSDHSKA 271
           L A+                 SP      + ++ G+ +                + +SKA
Sbjct: 225 LAAKKAXYTLSAQDEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKA 284
Query: 272 ----VTCLAYST-GDLLISGSEDGMVRVWDPITHN 301
                  LA+S  G  L +G  D ++RVW   T N
Sbjct: 285 AEPHAVSLAWSADGQTLFAGYTDNVIRVWQVXTAN 319

>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6 Length = 310

Iteration: 1
 Score = 52.4 bits (124), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 60/260 (23%), Positives = 109/260 (41%), Gaps = 34/260 (13%)
Query: 60  SGSILYWSWSKPQVEVKSLPAE--PIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKK 117
           SG +  W++ + QVEV+S+     P++     +   +I  G     I ++   +G  +  
Sbjct: 34  SGRVELWNY-ETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVD 92
Query: 118 WHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLR 177
           + AH   +  +       +++SGS+D  V++W+        E+  A      +F GH   
Sbjct: 93  FEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNW-------ENNWALE---QTFEGHEHF 142
Query: 178 ITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPS-------VIDAIALDPAE 230
           +  +       S T  S   DRT KVWSL  G+   N    +        +D   L P +
Sbjct: 143 VMCVAFNPKDPS-TFASGCLDRTVKVWSL--GQSTPNFTLTTGQERGVNYVDYYPL-PDK 198
Query: 231 HVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVT-CLAYSTGDLLISGSED 289
                 S D +I I     +S          + +L  H   V+  + + T  ++ISGSED
Sbjct: 199 PYMITASDDLTIKIWDYQTKS---------CVATLEGHMSNVSFAVFHPTLPIIISGSED 249
Query: 290 GMVRVWDPITHNIVRMFRLA 309
           G +++W+  T+ + +   + 
Sbjct: 250 GTLKIWNSSTYKVEKTLNVG 269

>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif Length = 304

Iteration: 1
 Score = 52.4 bits (124), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 60/260 (23%), Positives = 109/260 (41%), Gaps = 34/260 (13%)
Query: 60  SGSILYWSWSKPQVEVKSLPAE--PIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKK 117
           SG +  W++ + QVEV+S+     P++     +   +I  G     I ++   +G  +  
Sbjct: 34  SGRVELWNY-ETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVD 92
Query: 118 WHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLR 177
           + AH   +  +       +++SGS+D  V++W+        E+  A      +F GH   
Sbjct: 93  FEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNW-------ENNWALE---QTFEGHEHF 142
Query: 178 ITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPS-------VIDAIALDPAE 230
           +  +       S T  S   DRT KVWSL  G+   N    +        +D   L P +
Sbjct: 143 VMCVAFNPKDPS-TFASGCLDRTVKVWSL--GQSTPNFTLTTGQERGVNYVDYYPL-PDK 198
Query: 231 HVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVT-CLAYSTGDLLISGSED 289
                 S D +I I     +S          + +L  H   V+  + + T  ++ISGSED
Sbjct: 199 PYMITASDDLTIKIWDYQTKS---------CVATLEGHMSNVSFAVFHPTLPIIISGSED 249
Query: 290 GMVRVWDPITHNIVRMFRLA 309
           G +++W+  T+ + +   + 
Sbjct: 250 GTLKIWNSSTYKVEKTLNVG 269

>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a Cryo-em Map Of Yeast 80s Ribosome Length = 314

Iteration: 1
 Score = 52.4 bits (124), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 40/184 (21%), Positives = 78/184 (42%), Gaps = 27/184 (14%)
Query: 82  PIKPIAANSH----------GTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFS 131
           P++    +SH          G Y         + +W+VA+G   +++  H   V  +   
Sbjct: 57  PVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDID 116
Query: 132 EDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVI----GYGG 187
           +  S +ISGS D  +++W   T+  +C         L +  GH   ++ + +        
Sbjct: 117 KKASMIISGSRDKTIKVW---TIKGQC---------LATLLGHNDWVSQVRVVPNEKADD 164
Query: 188 VSATIVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYAGSRDGSIYIAA 246
            S TI+SA  D+  K W+L + ++  + +   S I+ +   P   +  +  +DG I +  
Sbjct: 165 DSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWN 224
Query: 247 LNAE 250
           L A+
Sbjct: 225 LAAK 228

>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P21 Length = 319

Iteration: 1
 Score = 52.0 bits (123), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 40/184 (21%), Positives = 78/184 (42%), Gaps = 27/184 (14%)
Query: 82  PIKPIAANSH----------GTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFS 131
           P++    +SH          G Y         + +W+VA+G   +++  H   V  +   
Sbjct: 57  PVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDID 116
Query: 132 EDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVI----GYGG 187
           +  S +ISGS D  +++W   T+  +C         L +  GH   ++ + +        
Sbjct: 117 KKASMIISGSRDKTIKVW---TIKGQC---------LATLLGHNDWVSQVRVVPNEKADD 164
Query: 188 VSATIVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYAGSRDGSIYIAA 246
            S TI+SA  D+  K W+L + ++  + +   S I+ +   P   +  +  +DG I +  
Sbjct: 165 DSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWN 224
Query: 247 LNAE 250
           L A+
Sbjct: 225 LAAK 228

>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 435

Iteration: 1
 Score = 52.0 bits (123), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 51/212 (24%), Positives = 89/212 (41%), Gaps = 45/212 (21%)
Query: 95  IAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWS---- 150
           I  G +   I +W+  +    +    H  +V CL + E    +I+GS D  VR+W     
Sbjct: 146 IVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDE--RVIITGSSDSTVRVWDVNTG 203
Query: 151 --LLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLK 208
             L T+   CE+       LH      LR  +           +V+ S+DR+  VW +  
Sbjct: 204 EMLNTLIHHCEA------VLH------LRFNN---------GMMVTCSKDRSIAVWDMAS 242
Query: 209 GR--LLRNIVF--PSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGS 264
                LR ++    + ++ +  D    V  +G R   ++       + ST  +    + +
Sbjct: 243 PTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVW-------NTSTCEF----VRT 291
Query: 265 LSDHSKAVTCLAYSTGDLLISGSEDGMVRVWD 296
           L+ H + + CL Y    L++SGS D  +R+WD
Sbjct: 292 LNGHKRGIACLQYR-DRLVVSGSSDNTIRLWD 322

>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61 Length = 321

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 42/149 (28%), Positives = 68/149 (45%), Gaps = 5/149 (3%)
Query: 3   LLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGS 62
           L IA+SS  D  I  WDLE+G +    KS  + P     +   F   SQ     +     
Sbjct: 92  LPIAASSSLDAHIRLWDLENGKQ---IKSIDAGPVDAWTLA--FSPDSQYLATGTHVGKV 146
Query: 63  ILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHY 122
            ++   S  +        + I  IA +  G Y+A G   G I ++++A+G+LL     H 
Sbjct: 147 NIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHA 206
Query: 123 RAVTCLVFSEDGSFLISGSEDGCVRIWSL 151
             +  L FS D   L++ S+DG ++I+ +
Sbjct: 207 MPIRSLTFSPDSQLLVTASDDGYIKIYDV 235

>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61 Length = 321

Iteration: 1
 Score = 45.4 bits (106), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 34/140 (24%), Positives = 65/140 (46%), Gaps = 15/140 (10%)
Query: 74  EVKSLPAEPIKP--IAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFS 131
           ++KS+ A P+    +A +    Y+A G   G + ++ V SG+         + +  + +S
Sbjct: 114 QIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYS 173
Query: 132 EDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSAT 191
            DG +L SG+ DG + I+ +           A+   LH+  GH + I  +   +   S  
Sbjct: 174 PDGKYLASGAIDGIINIFDI-----------ATGKLLHTLEGHAMPIRSLT--FSPDSQL 220
Query: 192 IVSASEDRTCKVWSLLKGRL 211
           +V+AS+D   K++ +    L
Sbjct: 221 LVTASDDGYIKIYDVQHANL 240

>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61 Length = 321

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 48/212 (22%), Positives = 85/212 (40%), Gaps = 28/212 (13%)
Query: 112 GRLLKKWHAHYRAVTCLVF----SEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLY 167
           G L K+  AH  A+  + +     E+   +++GS D  V++W            R   L 
Sbjct: 22  GILFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKW----------RDERLD 71
Query: 168 LH-SFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNI-VFPSVIDAIA 225
           L  S  GH L +  + I +        S+S D   ++W L  G+ +++I   P     +A
Sbjct: 72  LQWSLEGHQLGVVSVDISH--TLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLA 129
Query: 226 LDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYS-TGDLLI 284
             P       G+  G + I  + +     S         L    K +  +AYS  G  L 
Sbjct: 130 FSPDSQYLATGTHVGKVNIFGVESGKKEYS---------LDTRGKFILSIAYSPDGKYLA 180
Query: 285 SGSEDGMVRVWDPITHNIVRMFRLAKGPVNNI 316
           SG+ DG++ ++D  T  ++        P+ ++
Sbjct: 181 SGAIDGIINIFDIATGKLLHTLEGHAMPIRSL 212

>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif Length = 604

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 60/260 (23%), Positives = 109/260 (41%), Gaps = 34/260 (13%)
Query: 60  SGSILYWSWSKPQVEVKSLPAE--PIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKK 117
           SG +  W++ + QVEV+S+     P++     +   +I  G     I ++   +G  +  
Sbjct: 34  SGRVELWNY-ETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVD 92
Query: 118 WHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLR 177
           + AH   +  +       +++SGS+D  V++W+        E+  A      +F GH   
Sbjct: 93  FEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWN-------WENNWALE---QTFEGHEHF 142
Query: 178 ITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPS-------VIDAIALDPAE 230
           +  +       S T  S   DRT KVWSL  G+   N    +        +D   L P +
Sbjct: 143 VMCVAFNPKDPS-TFASGCLDRTVKVWSL--GQSTPNFTLTTGQERGVNYVDYYPL-PDK 198
Query: 231 HVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVT-CLAYSTGDLLISGSED 289
                 S D +I I     +S          + +L  H   V+  + + T  ++ISGSED
Sbjct: 199 PYMITASDDLTIKIWDYQTKS---------CVATLEGHMSNVSFAVFHPTLPIIISGSED 249
Query: 290 GMVRVWDPITHNIVRMFRLA 309
           G +++W+  T+ + +   + 
Sbjct: 250 GTLKIWNSSTYKVEKTLNVG 269

>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex Of The Copi Vesicular Coat Length = 814

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 60/260 (23%), Positives = 109/260 (41%), Gaps = 34/260 (13%)
Query: 60  SGSILYWSWSKPQVEVKSLPAE--PIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKK 117
           SG +  W++ + QVEV+S+     P++     +   +I  G     I ++   +G  +  
Sbjct: 34  SGRVEIWNY-ETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVD 92
Query: 118 WHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLR 177
           + AH   +  +       +++SGS+D  V++W+        E+  A      +F GH   
Sbjct: 93  FEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWN-------WENNWALE---QTFEGHEHF 142
Query: 178 ITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPS-------VIDAIALDPAE 230
           +  +       S T  S   DRT KVWSL  G+   N    +        +D   L P +
Sbjct: 143 VMCVAFNPKDPS-TFASGCLDRTVKVWSL--GQSTPNFTLTTGQERGVNYVDYYPL-PDK 198
Query: 231 HVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVT-CLAYSTGDLLISGSED 289
                 S D +I I     +S          + +L  H   V+  + + T  ++ISGSED
Sbjct: 199 PYMITASDDLTIKIWDYQTKS---------CVATLEGHMSNVSFAVFHPTLPIIISGSED 249
Query: 290 GMVRVWDPITHNIVRMFRLA 309
           G +++W+  T+ + +   + 
Sbjct: 250 GTLKIWNSSTYKVEKTLNVG 269

>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 343

Iteration: 1
 Score = 48.5 bits (114), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 51/210 (24%), Positives = 86/210 (40%), Gaps = 26/210 (12%)
Query: 131 SEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSA 190
           +ED   LISGS D  V IW L   +EE E      +   + TGH   ++D+ +      A
Sbjct: 36  NEDSPVLISGSRDKTVMIWKL---YEE-EQNGYFGIPHKALTGHNHFVSDLALSQENCFA 91
Query: 191 TIVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNA 249
             +S+S D+T ++W L  G   +  V   S + ++A  P      +   +  I +  +  
Sbjct: 92  --ISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILG 149
Query: 250 ESPSTSSYGMHIIGSLSDHSKAVTCLAYST-----------GDLLISGSEDGMVRVWDPI 298
           E   +S+          +HS  V+C+ YS                 S   DG ++VW+  
Sbjct: 150 ECKFSSA-------EKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWN-T 201
Query: 299 THNIVRMFRLAKGPVNNILVVRRPLYLNLG 328
              I   F+  +  VN++ +     Y+  G
Sbjct: 202 NFQIRYTFKAHESNVNHLSISPNGKYIATG 231

>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS CRYSTAL Structure Length = 354

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 50/200 (25%), Positives = 83/200 (41%), Gaps = 28/200 (14%)
Query: 102 GDIYMWEVASGRLLKKWHAHYRAVTCLVF--SEDGSFLISGSEDGCVRIWSLLTVFEECE 159
           G   +W+V SG+LL+ +H H   V CL    SE G+  +SG  D    +W + +   +C 
Sbjct: 176 GTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRS--GQC- 232
Query: 160 SQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPS 219
                   + +F  H   +  +   Y        S S+D TC+++ L   R +      S
Sbjct: 233 --------VQAFETHESDVNSVR--YYPSGDAFASGSDDATCRLYDLRADREVAIYSKES 282
Query: 220 VI---DAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLA 276
           +I    ++    +  + +AG  D +I +  +   S  +  +G         H   V+ L 
Sbjct: 283 IIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFG---------HENRVSTLR 333
Query: 277 YS-TGDLLISGSEDGMVRVW 295
            S  G    SGS D  +RVW
Sbjct: 334 VSPDGTAFCSGSWDHTLRVW 353

>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes From Xenopus Laevis Length = 357

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 56/216 (25%), Positives = 90/216 (41%), Gaps = 33/216 (15%)
Query: 100 QSGDIYMWEVASGR--LLKKW--HAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVF 155
            SG + +WE+      L+ K+  + H   V  L    DG+  +SG +D  V++W L    
Sbjct: 113 DSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDL---- 168
Query: 156 EECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNI 215
               SQ+A    L S+  H+  + + V    G     +S  ED    +W   K +    I
Sbjct: 169 ----SQKA---VLKSYNAHSSEV-NCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRI 220
Query: 216 VF---PSVIDAIALDP-AEHVFYAGSRDGSIYIAAL-NAESPSTSSYGMHIIGSLSDHSK 270
            F    ++  ++   P  +  F  G   G++ +  + N +S  TS+           HS+
Sbjct: 221 DFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAV----------HSQ 270
Query: 271 AVTCLAYS--TGDLLISGSEDGMVRVWDPITHNIVR 304
            +T LAYS  +   L S SED  V V D     + R
Sbjct: 271 NITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFR 306

>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1 Length = 337

Iteration: 1
 Score = 45.8 bits (107), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 44/207 (21%), Positives = 79/207 (38%), Gaps = 26/207 (12%)
Query: 92  GTYIAGGGQSGDIYMWEVA--SGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIW 149
           G  +  GG++  + +W++A  + R+  +  +   A   L  S D     S   DG + +W
Sbjct: 109 GCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVW 168
Query: 150 SLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKG 209
            L            +   +  F GHT   + I I   G    + +   D T + W L +G
Sbjct: 169 DL-----------HNQTLVRQFQGHTDGASCIDISNDGTK--LWTGGLDNTVRSWDLREG 215
Query: 210 RLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHS 269
           R L+   F S I ++   P       G    ++ +  +N        Y +H+      H 
Sbjct: 216 RQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKP----DKYQLHL------HE 265
Query: 270 KAVTCLAYS-TGDLLISGSEDGMVRVW 295
             V  L ++  G   +S  +D ++  W
Sbjct: 266 SCVLSLKFAYCGKWFVSTGKDNLLNAW 292

>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2 Length = 425

Iteration: 1
 Score = 44.7 bits (104), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 41/187 (21%), Positives = 82/187 (43%), Gaps = 39/187 (20%)
Query: 125 VTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIG 184
           VTCL +S DG+ +++G E+G +R+W+             +   L+    H   I  +   
Sbjct: 111 VTCLAWSHDGNSIVTGVENGELRLWN------------KTGALLNVLNFHRAPIVSVKWN 158
Query: 185 YGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFP----SVIDA--------IALDPA--- 229
             G    I+S   +    +W+++ G ++++        S I+A        + +D     
Sbjct: 159 KDGTH--IISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVD 216
Query: 230 EHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYS-TGDLLISGSE 288
           +  F      G+I++  +  ++P+         G L  H   ++ L ++ T  LL+S S+
Sbjct: 217 DDKFVIPGPKGAIFVYQITEKTPT---------GKLIGHHGPISVLEFNDTNKLLLSASD 267
Query: 289 DGMVRVW 295
           DG +R+W
Sbjct: 268 DGTLRIW 274

>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 380

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 49/214 (22%), Positives = 94/214 (43%), Gaps = 38/214 (17%)
Query: 101 SGD--IYMWEVASGRLLKKWHAHY------RAVTCLVFSEDGSFLISGSEDGCVRIWSLL 152
           SGD    +W+V +G+ +  + + +        ++  + S + +  ISGS D  VR+W L 
Sbjct: 177 SGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDL- 235
Query: 153 TVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLL 212
                    R +   + ++ GH   I  +     G      + S+D TC+++ +  G  L
Sbjct: 236 ---------RITSRAVRTYHGHEGDINSVKFFPDG--QRFGTGSDDGTCRLFDMRTGHQL 284
Query: 213 --------RNIVFPSVIDAIALDPAEHVFYAGSRDGSIYI-AALNAESPSTSSYGMHIIG 263
                   RN     ++ ++A   +  + +AG  +G  Y+   L AE        +  +G
Sbjct: 285 QVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEM-------VLNLG 337
Query: 264 SLSD-HSKAVTCLAYST-GDLLISGSEDGMVRVW 295
           +L + H   ++CL  S+ G  L +GS D  +++W
Sbjct: 338 TLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIW 371

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	424
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	100.0
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	100.0
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	100.0
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
3jrp_A	379	Fusion protein of protein transport protein SEC13	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
3jrp_A	379	Fusion protein of protein transport protein SEC13	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	100.0
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	100.0
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	100.0
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	100.0
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	100.0
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	100.0
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	100.0
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	100.0
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	100.0
3jro_A	753	Fusion protein of protein transport protein SEC13	100.0
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	100.0
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	100.0
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	100.0
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	100.0
3jro_A	753	Fusion protein of protein transport protein SEC13	100.0
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	100.0
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	100.0
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	100.0
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	100.0
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	100.0
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	100.0
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	100.0
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	100.0
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	100.0
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	100.0
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.98
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.97
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.96
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.96
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.96
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.96
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.95
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.95
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.95
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.95
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.95
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.95
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.95
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.95
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.95
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.95
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.94
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.94
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.94
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.93
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.93
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.92
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.92
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.92
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.92
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.92
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.91
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.91
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.91
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.9
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.9
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.9
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.89
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.89
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.89
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.88
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.88
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.87
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.87
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.86
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.85
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.85
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.84
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.83
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.82
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.82
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.81
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.81
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.81
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.8
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.79
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.79
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.79
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.79
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.78
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.78
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.77
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.77
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.76
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.75
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.75
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.75
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.74
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.74
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.73
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.72
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.72
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.71
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.71
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.7
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.7
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.69
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.68
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.67
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.67
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.66
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.64
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.62
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.62
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	99.61
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.6
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.6
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.6
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.6
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.57
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	99.56
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.56
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.55
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	99.55
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.55
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.54
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	99.53
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.52
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.5
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.47
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	99.46
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.46
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.45
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	99.43
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	99.42
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.41
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.39
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	99.38
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	99.37
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	99.31
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	99.31
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	99.3
2ece_A	462	462AA long hypothetical selenium-binding protein;	99.3
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	99.29
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	99.28
2ece_A	462	462AA long hypothetical selenium-binding protein;	99.23
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	99.22
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	99.21
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.2
4a2l_A	795	BT_4663, two-component system sensor histidine kin	99.17
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	99.15
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	99.14
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	99.13
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	99.11
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	99.08
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	99.06
4a2l_A	795	BT_4663, two-component system sensor histidine kin	99.05
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	99.04
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.98
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.98
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	98.93
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	98.93
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.91
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.91
3v9f_A	781	Two-component system sensor histidine kinase/RESP	98.9
3v9f_A	781	Two-component system sensor histidine kinase/RESP	98.9
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.89
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	98.88
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.88
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.87
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.87
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	98.86
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.84
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.83
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	98.83
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.8
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	98.79
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.73
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	98.7
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	98.68
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.64
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	98.62
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.62
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.6
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.57
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	98.57
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	98.55
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.54
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	98.52
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	98.51
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	98.47
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	98.47
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	98.44
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	98.42
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.41
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	98.4
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	98.39
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	98.33
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	98.29
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	98.27
3kya_A	496	Putative phosphatase; structural genomics, joint c	98.25
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	98.21
3kya_A	496	Putative phosphatase; structural genomics, joint c	98.2
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	98.19
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	98.17
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	98.16
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	98.1
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	98.09
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	98.06
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	98.04
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	98.03
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	98.02
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	98.0
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	97.98
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	97.96
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	97.96
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	97.95
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	97.92
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	97.89
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	97.89
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	97.87
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	97.85
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	97.8
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	97.8
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	97.71
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	97.7
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	97.61
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	97.61
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	97.57
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	97.54
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	97.49
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	97.46
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	97.42
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	97.41
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	97.4
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	97.3
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	97.3
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	97.3
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	97.26
3ott_A	758	Two-component system sensor histidine kinase; beta	97.2
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	97.2
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	97.18
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	97.15
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	96.83
3qhy_B	282	Beta-lactamase inhibitory protein II; enyzme-inhib	96.68
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	96.68
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	96.64
3ott_A	758	Two-component system sensor histidine kinase; beta	96.58
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	96.25
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	96.05
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	95.79
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	95.74
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	95.68
1suu_A	312	DNA gyrase subunit A; topoisomerase,DNA gyrase, be	95.38
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	95.1
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	95.06
3uc1_A	327	DNA gyrase subunit A; DNA binding protein, topoiso	94.62
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	94.45
3qhy_B	282	Beta-lactamase inhibitory protein II; enyzme-inhib	94.39
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	94.02
3uc1_A	327	DNA gyrase subunit A; DNA binding protein, topoiso	93.79
1zi0_A	307	DNA gyrase subunit A; beta pinwheel, topoisomerase	93.5
3l6v_A	370	GYRA, DNA gyrase subunit A; gyrase A C-terminal do	93.29
1wp5_A	323	Topoisomerase IV; broken beta-propeller, hairpin-i	92.99
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	92.83
3b7f_A	394	Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop	92.07
3kci_A	389	Probable E3 ubiquitin-protein ligase HERC2; WD40,	91.53
3b7f_A	394	Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop	91.07
1suu_A	312	DNA gyrase subunit A; topoisomerase,DNA gyrase, be	91.02
1zi0_A	307	DNA gyrase subunit A; beta pinwheel, topoisomerase	90.48
3no0_A	276	DNA gyrase subunit A; DNA topology, topoisomerase,	89.79
1wp5_A	323	Topoisomerase IV; broken beta-propeller, hairpin-i	89.42
3kci_A	389	Probable E3 ubiquitin-protein ligase HERC2; WD40,	89.16
3l6v_A	370	GYRA, DNA gyrase subunit A; gyrase A C-terminal do	89.02
4gq2_M	950	Nucleoporin NUP120; beta propeller alpha helical,	87.46
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	85.91
4gq2_M	950	Nucleoporin NUP120; beta propeller alpha helical,	85.77
4hvt_A	711	Ritya.17583.B, post-proline cleaving enzyme; ssgci	84.58
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	84.47
3zwu_A	592	Alkaline phosphatase PHOX; hydrolase, beta-propell	83.28
3no0_A	276	DNA gyrase subunit A; DNA topology, topoisomerase,	83.21

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=5.3e-49  Score=362.27  Aligned_cols=282  Identities=19%  Similarity=0.346  Sum_probs=260.6

Q ss_pred             CCCCceEEecceeecCCCccccCCCCceeEEEEECCCCcee-eeecCCCCeeEEEECCCCCEEEEecCCCcEEEEEccCc
Q 014475           34 SPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVE-VKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASG  112 (424)
Q Consensus        34 ~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~  112 (424)
                      +|...|.+++  |+|+++++++++.| |+|++||+.+++.. ....|.+.|.+++|+|++++|++|+.|++|++||+.++
T Consensus       106 gh~~~V~~~~--~~p~~~~l~s~s~D-g~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~  182 (410)
T 1vyh_C          106 GHRSPVTRVI--FHPVFSVMVSASED-ATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGF  182 (410)
T ss_dssp             CCSSCEEEEE--ECSSSSEEEEEESS-SCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSS
T ss_pred             ccCCcEEEEE--EcCCCCEEEEEeCC-CeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC
Confidence            3567899999  99999999999998 99999999987765 34568999999999999999999999999999999999


Q ss_pred             ceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEE
Q 014475          113 RLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATI  192 (424)
Q Consensus       113 ~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l  192 (424)
                      +++..+.+|...|.+++|+|++++|++|+.|+.|++||+++           ...+..+.+|...|.++.+++++  .++
T Consensus       183 ~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~-----------~~~~~~~~~h~~~v~~~~~~~~g--~~l  249 (410)
T 1vyh_C          183 ECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQT-----------GYCVKTFTGHREWVRMVRPNQDG--TLI  249 (410)
T ss_dssp             CEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTT-----------CCEEEEEECCSSCEEEEEECTTS--SEE
T ss_pred             ceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCC-----------CcEEEEEeCCCccEEEEEECCCC--CEE
Confidence            99999999999999999999999999999999999999965           34567788999999999999988  899


Q ss_pred             EEEeCCCcEEEEecCCCceeeeee-cCcceeEEEECCC--------------------CCEEEEEeCCCcEEEEEcCCCC
Q 014475          193 VSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPA--------------------EHVFYAGSRDGSIYIAALNAES  251 (424)
Q Consensus       193 ~~~~~d~~v~iwd~~~~~~~~~~~-~~~~i~~~~~~~~--------------------~~~l~~~~~dg~i~i~d~~~~~  251 (424)
                      ++++.|+.|++||+++++....+. |...|.+++|+|+                    +.++++|+.|+.|++||++++ 
T Consensus       250 ~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~-  328 (410)
T 1vyh_C          250 ASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTG-  328 (410)
T ss_dssp             EEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTT-
T ss_pred             EEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCC-
Confidence            999999999999999998888776 8889999999996                    678999999999999999986 


Q ss_pred             CCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCCCcEEEEEeccCCCeeEEEEEecCceeeeccC
Q 014475          252 PSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSF  330 (424)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~  330 (424)
                              .++..+.+|...|++++|+| +.+|++|+.||.|++||+.+++++..+.+|...|++++|+|++.+|++|+.
T Consensus       329 --------~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sgs~  400 (410)
T 1vyh_C          329 --------MCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSV  400 (410)
T ss_dssp             --------EEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEET
T ss_pred             --------ceEEEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEcCCCCEEEEEeC
Confidence                    66788889999999999999 999999999999999999999999999999999999999999999999999


Q ss_pred             CCceeeccCC
Q 014475          331 SNPHTSSRRH  340 (424)
Q Consensus       331 d~~i~iw~~~  340 (424)
                      ||.|++|+.+
T Consensus       401 D~~i~vW~~r  410 (410)
T 1vyh_C          401 DQTVKVWECR  410 (410)
T ss_dssp             TSEEEEEC--
T ss_pred             CCcEEEEeCC
Confidence            9999999863

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=1.3e-48  Score=347.55  Aligned_cols=286  Identities=19%  Similarity=0.252  Sum_probs=259.2

Q ss_pred             eCCCCCCCceEEecceeecC----CCccccCCCCceeEEEEECCCCceee---eecCCCCeeEEEECCCCCEEEEecCCC
Q 014475           30 KSCASPPHGLACVGQRFLAS----SQLREQPSASSGSILYWSWSKPQVEV---KSLPAEPIKPIAANSHGTYIAGGGQSG  102 (424)
Q Consensus        30 ~~~~~~~~~v~~~~~~~~~~----~~~l~~~~~~~g~i~vwd~~~~~~~~---~~~~~~~v~~~~~s~~~~~l~~~~~dg  102 (424)
                      +...+|...|.+++  |+|+    +.++++++.| ++|++|++..++...   ...|...|.+++|+|++.++++++.|+
T Consensus        26 ~~~~~H~~~V~~v~--~~~~~~~~~~~l~tgs~D-~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~  102 (321)
T 3ow8_A           26 KQEQAHDDAIWSVA--WGTNKKENSETVVTGSLD-DLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDA  102 (321)
T ss_dssp             EETTSSSSCEEEEE--EC-------CEEEEEETT-SCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTS
T ss_pred             eecccCCCcEEEEE--EecCCCCCCCEEEEEcCC-CCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCC
Confidence            34456778899999  9875    5689999988 999999998765432   356889999999999999999999999


Q ss_pred             cEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEE
Q 014475          103 DIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIV  182 (424)
Q Consensus       103 ~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  182 (424)
                      .|++||+++++.+..+..|...+.+++|+|++++|++++.||.|++||+++           ......+..|...+.+++
T Consensus       103 ~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~-----------~~~~~~~~~~~~~v~~~~  171 (321)
T 3ow8_A          103 HIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVES-----------GKKEYSLDTRGKFILSIA  171 (321)
T ss_dssp             EEEEEETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTT-----------CSEEEEEECSSSCEEEEE
T ss_pred             cEEEEECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCC-----------CceeEEecCCCceEEEEE
Confidence            999999999999999999999999999999999999999999999999965           234556778889999999


Q ss_pred             EEEcCceeEEEEEeCCCcEEEEecCCCceeeeee-cCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCcee
Q 014475          183 IGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHI  261 (424)
Q Consensus       183 ~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~  261 (424)
                      |+|++  ++|++++.|+.|++||+++++.+..+. |...|.+++|+|++++|++++.|+.|++||++..         ..
T Consensus       172 ~spdg--~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~---------~~  240 (321)
T 3ow8_A          172 YSPDG--KYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHA---------NL  240 (321)
T ss_dssp             ECTTS--SEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTC---------CE
T ss_pred             ECCCC--CEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCc---------ce
Confidence            99998  899999999999999999999988887 7889999999999999999999999999999876         55


Q ss_pred             eeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCCCcEEEEEeccCCCeeEEEEEecCceeeeccCCCceeeccCC
Q 014475          262 IGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRH  340 (424)
Q Consensus       262 ~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~d~~i~iw~~~  340 (424)
                      ...+.+|...|.+++|+| +.+|++++.|+.|++||+++++++.++.+|.+.|.+++|+|++++|++++.||.|++||.+
T Consensus       241 ~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~p  320 (321)
T 3ow8_A          241 AGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDCP  320 (321)
T ss_dssp             EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCCEEEEECC
T ss_pred             eEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence            678889999999999999 9999999999999999999999999999999999999999999999999999999999964

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=1e-47  Score=371.59  Aligned_cols=318  Identities=16%  Similarity=0.203  Sum_probs=263.7

Q ss_pred             EEeecCCCCCceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCceeeee------
Q 014475            4 LIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKS------   77 (424)
Q Consensus         4 ~lat~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~~------   77 (424)
                      +|++++ .|++|++||..+++...++.+|   ...|.+++  |+|+++++++++.| ++|++||..+++.....      
T Consensus       162 ~l~s~s-~D~~v~lwd~~~~~~~~~l~~H---~~~V~~v~--fspdg~~las~s~D-~~i~lwd~~~g~~~~~~~~~~~~  234 (611)
T 1nr0_A          162 RIISGS-DDNTVAIFEGPPFKFKSTFGEH---TKFVHSVR--YNPDGSLFASTGGD-GTIVLYNGVDGTKTGVFEDDSLK  234 (611)
T ss_dssp             EEEEEE-TTSCEEEEETTTBEEEEEECCC---SSCEEEEE--ECTTSSEEEEEETT-SCEEEEETTTCCEEEECBCTTSS
T ss_pred             EEEEEe-CCCeEEEEECCCCeEeeeeccc---cCceEEEE--ECCCCCEEEEEECC-CcEEEEECCCCcEeeeecccccc
Confidence            689999 9999999999999888888764   46788999  99999999999998 99999999877654332      


Q ss_pred             --cCCCCeeEEEECCCCCEEEEecCCCcEEEEEccCcceee---------------------------------------
Q 014475           78 --LPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLK---------------------------------------  116 (424)
Q Consensus        78 --~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~---------------------------------------  116 (424)
                        .|.+.|.+++|+|++++|++++.|++|++||+++++.+.                                       
T Consensus       235 ~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~  314 (611)
T 1nr0_A          235 NVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELG  314 (611)
T ss_dssp             SCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTT
T ss_pred             ccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCC
Confidence              588999999999999999999999999999998775443                                       


Q ss_pred             ----eeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhccccc-----------------------------
Q 014475          117 ----KWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRA-----------------------------  163 (424)
Q Consensus       117 ----~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-----------------------------  163 (424)
                          .+.+|...|.+++|+|++++|++++.|+.|++||+.++.........                             
T Consensus       315 ~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~  394 (611)
T 1nr0_A          315 SIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVP  394 (611)
T ss_dssp             EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEEC
T ss_pred             CcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCCCcEEEEEcCCceEEee
Confidence                33578999999999999999999999999999999764321100000                             


Q ss_pred             ---------------------------cc----------------ceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCc
Q 014475          164 ---------------------------SH----------------LYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRT  200 (424)
Q Consensus       164 ---------------------------~~----------------~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~  200 (424)
                                                 ..                ..+..+ .|...+.+++|+|++  ++|++|+.|++
T Consensus       395 ~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~-~~~~~v~~va~spdg--~~lasgs~D~~  471 (611)
T 1nr0_A          395 AGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEV-PISYNSSCVALSNDK--QFVAVGGQDSK  471 (611)
T ss_dssp             SSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEE-ECSSCEEEEEECTTS--CEEEEEETTSE
T ss_pred             cCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeee-ecCCCceEEEEeCCC--CEEEEeCCCCe
Confidence                                       00                000111 145567899999998  89999999999


Q ss_pred             EEEEecCCCce--eeeeecCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeee--ecccCcCeEEEE
Q 014475          201 CKVWSLLKGRL--LRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGS--LSDHSKAVTCLA  276 (424)
Q Consensus       201 v~iwd~~~~~~--~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~--~~~~~~~i~~~~  276 (424)
                      |++||+.+++.  .....|...|.+++|+|++++|++++.|+.|++|++.+..        +....  ...|...|.+++
T Consensus       472 v~lwd~~~~~~~~~~~~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~--------~~~~~~~~~~H~~~V~~v~  543 (611)
T 1nr0_A          472 VHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNF--------ELAHTNSWTFHTAKVACVS  543 (611)
T ss_dssp             EEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTT--------EESCCCCCCCCSSCEEEEE
T ss_pred             EEEEEccCCceeeeeccCCCCceEEEEECCCCCEEEEEcCCCCEEEEEcCCCC--------ceeeeeeeeecccceeEEE
Confidence            99999987653  2344588999999999999999999999999999998732        22222  345999999999


Q ss_pred             ecC-CCEEEEeCCCCcEEEEeCCCCc-EE-EEEecc-CCCeeEEEEEecCceeeeccCCCceeeccCC
Q 014475          277 YST-GDLLISGSEDGMVRVWDPITHN-IV-RMFRLA-KGPVNNILVVRRPLYLNLGSFSNPHTSSRRH  340 (424)
Q Consensus       277 ~~~-~~~l~t~~~dg~i~iwd~~~~~-~~-~~~~~~-~~~v~~l~~s~~~~~l~~~~~d~~i~iw~~~  340 (424)
                      |+| +++|++|+.|++|++||+.++. .+ ..+.+| .+.|.+++|+|+++ |++++.|++|++|+++
T Consensus       544 fspdg~~lasgs~D~~v~lW~~~~~~~~~~~~~~~h~~~~v~~v~fs~d~~-l~s~~~D~~i~lW~~~  610 (611)
T 1nr0_A          544 WSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETT-IVSAGQDSNIKFWNVP  610 (611)
T ss_dssp             ECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEEEETTE-EEEEETTSCEEEEECC
T ss_pred             ECCCCCEEEEEECCCcEEEEECCCcccccchhhccCcccCeeEEEEcCCCE-EEEecCCCCEEEEecc
Confidence            999 9999999999999999998865 33 567789 89999999999998 9999999999999973

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=1.2e-47  Score=371.05  Aligned_cols=327  Identities=18%  Similarity=0.248  Sum_probs=264.1

Q ss_pred             EEEeecCCCCCceEEEeCCCCce--EEEeeCC-----------------------------------------CCCCCce
Q 014475            3 LLIASSSVADTGIGCWDLESGAE--QLRYKSC-----------------------------------------ASPPHGL   39 (424)
Q Consensus         3 ~~lat~~~~dg~i~vwd~~~~~~--~~~~~~~-----------------------------------------~~~~~~v   39 (424)
                      .+||+|+ .||+|+|||+.+++.  ..++..|                                         .+|...|
T Consensus        72 ~~lasg~-~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~~~~~~~l~gh~~~v  150 (611)
T 1nr0_A           72 YYCASGD-VHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAM  150 (611)
T ss_dssp             SEEEEEE-TTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCE
T ss_pred             cEEEEEe-CCCCEEEeECCCCcceeeEeecccCCceEEEEECCCCCEEEEEECCCCceeEEEEeeCCCCcceecCCCCCc
Confidence            3799999 999999999875432  2233222                                         2355567


Q ss_pred             EEecceeecCCCc-cccCCCCceeEEEEECCCCcee-eeecCCCCeeEEEECCCCCEEEEecCCCcEEEEEccCcceeee
Q 014475           40 ACVGQRFLASSQL-REQPSASSGSILYWSWSKPQVE-VKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKK  117 (424)
Q Consensus        40 ~~~~~~~~~~~~~-l~~~~~~~g~i~vwd~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~  117 (424)
                      .+++  |+|+++. +++++.| ++|++||....+.. ....|...|.+++|+|++++|++|+.|++|++||+.+++.+..
T Consensus       151 ~~v~--f~p~~~~~l~s~s~D-~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~  227 (611)
T 1nr0_A          151 NSVD--FKPSRPFRIISGSDD-NTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGV  227 (611)
T ss_dssp             EEEE--ECSSSSCEEEEEETT-SCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEE
T ss_pred             eEEE--ECCCCCeEEEEEeCC-CeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeee
Confidence            7777  8888874 7777776 99999998776544 3356889999999999999999999999999999999988887


Q ss_pred             ec-------cccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccc----------------------------
Q 014475          118 WH-------AHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQR----------------------------  162 (424)
Q Consensus       118 ~~-------~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~----------------------------  162 (424)
                      +.       +|.+.|.+++|+|++++|++++.|++|++||++++........                            
T Consensus       228 ~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~  307 (611)
T 1nr0_A          228 FEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFIN  307 (611)
T ss_dssp             CBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEE
T ss_pred             eccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEE
Confidence            74       7999999999999999999999999999999987543211100                            


Q ss_pred             ----cccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeee-----------------------
Q 014475          163 ----ASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNI-----------------------  215 (424)
Q Consensus       163 ----~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~-----------------------  215 (424)
                          ........+.+|...|++++|+|++  ++|++++.|++|++||+.+++....+                       
T Consensus       308 ~~~~~~~~~~~~~~gh~~~v~~l~~spdg--~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s  385 (611)
T 1nr0_A          308 FVNPELGSIDQVRYGHNKAITALSSSADG--KTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVS  385 (611)
T ss_dssp             EEETTTTEEEEEECCCSSCEEEEEECTTS--SEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEE
T ss_pred             EEeCCCCCcceEEcCCCCCEEEEEEeCCC--CEEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCCCcEEEEE
Confidence                0112345667899999999999998  89999999999999998766432211                       


Q ss_pred             ------------------------------------------------------------ecCcceeEEEECCCCCEEEE
Q 014475          216 ------------------------------------------------------------VFPSVIDAIALDPAEHVFYA  235 (424)
Q Consensus       216 ------------------------------------------------------------~~~~~i~~~~~~~~~~~l~~  235 (424)
                                                                                  .+...+.+++|+|+++++++
T Consensus       386 ~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spdg~~las  465 (611)
T 1nr0_A          386 WDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAV  465 (611)
T ss_dssp             TTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEE
T ss_pred             cCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeCCCCEEEE
Confidence                                                                        11234678999999999999


Q ss_pred             EeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCC-CcEEEE--EeccCC
Q 014475          236 GSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPIT-HNIVRM--FRLAKG  311 (424)
Q Consensus       236 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~-~~~~~~--~~~~~~  311 (424)
                      |+.|+.|++||+....       ...... .+|...|++++|+| +++|++++.|++|++||+.+ ++++..  +..|..
T Consensus       466 gs~D~~v~lwd~~~~~-------~~~~~~-~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~~~~~~~~~~H~~  537 (611)
T 1nr0_A          466 GGQDSKVHVYKLSGAS-------VSEVKT-IVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTA  537 (611)
T ss_dssp             EETTSEEEEEEEETTE-------EEEEEE-EECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSS
T ss_pred             eCCCCeEEEEEccCCc-------eeeeec-cCCCCceEEEEECCCCCEEEEEcCCCCEEEEEcCCCCceeeeeeeeeccc
Confidence            9999999999997752       122333 67999999999999 99999999999999999988 655543  345999


Q ss_pred             CeeEEEEEecCceeeeccCCCceeeccCCCCC
Q 014475          312 PVNNILVVRRPLYLNLGSFSNPHTSSRRHGSQ  343 (424)
Q Consensus       312 ~v~~l~~s~~~~~l~~~~~d~~i~iw~~~~~~  343 (424)
                      .|.+++|+||+++|++|+.|++|++|++....
T Consensus       538 ~V~~v~fspdg~~lasgs~D~~v~lW~~~~~~  569 (611)
T 1nr0_A          538 KVACVSWSPDNVRLATGSLDNSVIVWNMNKPS  569 (611)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEETTCTT
T ss_pred             ceeEEEECCCCCEEEEEECCCcEEEEECCCcc
Confidence            99999999999999999999999999998654

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=4.7e-48  Score=349.15  Aligned_cols=306  Identities=20%  Similarity=0.243  Sum_probs=237.0

Q ss_pred             EEeecCCCCCceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCCC-----ceeEEEEECCCCcee----
Q 014475            4 LIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSAS-----SGSILYWSWSKPQVE----   74 (424)
Q Consensus         4 ~lat~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~-----~g~i~vwd~~~~~~~----   74 (424)
                      +++.++ .+.....|++....+       ..|...|.+++  |+|||++|++++.+     |+.|++|+..++...    
T Consensus        18 ~~~~~~-g~~~~~~w~~p~~~p-------~~H~~~V~~v~--fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~   87 (357)
T 4g56_B           18 LYFQSN-GSSKGSAWGRPVTAP-------ACMEVQIGAVR--YRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLC   87 (357)
T ss_dssp             ------------------------------CCCSEEEEEE--ECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGC
T ss_pred             eEEecC-CCccccccCCCCCCc-------ccccCCEEEEE--ECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEe
Confidence            344445 567788888764322       24667899999  99999999999873     389999998765432    


Q ss_pred             -eeecCCCCeeEEEECCCCCEEEEecCCCcEEEEEccCcceee----eeccccCCeEEEEEccCCcEEEEeeCCCcEEEE
Q 014475           75 -VKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLK----KWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIW  149 (424)
Q Consensus        75 -~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~----~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iw  149 (424)
                       ....|...|.+++|+|++.++ +++.||+|+|||+.+++...    ...+|...|++++|+|++++|++|+.||.|++|
T Consensus        88 ~~~~~~~~~V~~~~~s~d~~~l-~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iw  166 (357)
T 4g56_B           88 TAGVQTEAGVTDVAWVSEKGIL-VASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVW  166 (357)
T ss_dssp             SEEEECSSCEEEEEEETTTEEE-EEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEE
T ss_pred             cccCCCCCCEEEEEEcCCCCEE-EEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEE
Confidence             234578899999999998755 56789999999998886543    234799999999999999999999999999999


Q ss_pred             eCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeee---cCcceeEEEE
Q 014475          150 SLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV---FPSVIDAIAL  226 (424)
Q Consensus       150 d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~---~~~~i~~~~~  226 (424)
                      |+++           ...+..+.+|...|++++|++++. ..+++++.|+.|++||++++++...+.   +...+.+++|
T Consensus       167 d~~~-----------~~~~~~~~~h~~~v~~v~~s~~~~-~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~  234 (357)
T 4g56_B          167 DLSQ-----------KAVLKSYNAHSSEVNCVAACPGKD-TIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTW  234 (357)
T ss_dssp             ETTT-----------TEEEEEECCCSSCEEEEEECTTCS-SCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEE
T ss_pred             ECCC-----------CcEEEEEcCCCCCEEEEEEccCCC-ceeeeeccCCceEEEECCCCceeeeeeeccccccccchhh
Confidence            9955           446777889999999999999874 578999999999999999988776654   5677999999


Q ss_pred             CCC-CCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-C-CEEEEeCCCCcEEEEeCCCCcEE
Q 014475          227 DPA-EHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-G-DLLISGSEDGMVRVWDPITHNIV  303 (424)
Q Consensus       227 ~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~-~~l~t~~~dg~i~iwd~~~~~~~  303 (424)
                      +|+ +.+|++|+.|+.|++||++++         +.+..+.+|...|++++|+| + ++|++|+.|++|+|||+++++++
T Consensus       235 sp~~~~~la~g~~d~~i~~wd~~~~---------~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~  305 (357)
T 4g56_B          235 HPEKDDTFACGDETGNVSLVNIKNP---------DSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVF  305 (357)
T ss_dssp             CTTSTTEEEEEESSSCEEEEESSCG---------GGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEE
T ss_pred             hhcccceEEEeecccceeEEECCCC---------cEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEe
Confidence            997 568889999999999999886         55677889999999999999 4 68999999999999999999887


Q ss_pred             EEEeccCCCeeEEEEEe-cCceeeeccCCCceeeccCCCC
Q 014475          304 RMFRLAKGPVNNILVVR-RPLYLNLGSFSNPHTSSRRHGS  342 (424)
Q Consensus       304 ~~~~~~~~~v~~l~~s~-~~~~l~~~~~d~~i~iw~~~~~  342 (424)
                      ..+ +|.+.|++++|+| ++.+|++++.||.|++|++...
T Consensus       306 ~~~-~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~  344 (357)
T 4g56_B          306 RDL-SHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPSE  344 (357)
T ss_dssp             EEC-CCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC--
T ss_pred             EEC-CCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCC
Confidence            765 6999999999998 7999999999999999998743

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=5.4e-48  Score=346.05  Aligned_cols=299  Identities=21%  Similarity=0.252  Sum_probs=238.2

Q ss_pred             eEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCC------------CceeeeecCCCC
Q 014475           15 IGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSK------------PQVEVKSLPAEP   82 (424)
Q Consensus        15 i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~------------~~~~~~~~~~~~   82 (424)
                      .+.|++....+       ..+...|.+++  |+|||++|++++ + +++++||...            ........+...
T Consensus        16 ~r~w~~~~~~~-------~~~~~~v~~~~--fs~dG~~l~~~s-d-~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (344)
T 4gqb_B           16 AREWNLPPNAP-------ACMERQLEAAR--YRSDGALLLGAS-S-LSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAG   84 (344)
T ss_dssp             -------CCSC-------SSCCSEEEEEE--ECTTSCEEEEEE-C-CSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSC
T ss_pred             ccccCCCCCCc-------ccccCCEEEEE--ECCCCCEEEEEe-C-CceEEeeceeeeeccccccCCcceeeeeeccCCC
Confidence            45677654332       22446688888  999999988776 3 6777776211            111122335678


Q ss_pred             eeEEEECCCCCEEEEecCCCcEEEEEccCcceeee----eccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchh
Q 014475           83 IKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKK----WHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEEC  158 (424)
Q Consensus        83 v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~----~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~  158 (424)
                      |.+++|+|++ .|++|+.||.|+|||+++++.+..    +.+|.+.|++++|+|++++|++|+.||.|++||+++     
T Consensus        85 v~~~~~s~d~-~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~-----  158 (344)
T 4gqb_B           85 VADLTWVGER-GILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQ-----  158 (344)
T ss_dssp             EEEEEEETTT-EEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT-----
T ss_pred             EEEEEEeCCC-eEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCC-----
Confidence            9999999986 678899999999999999876544    347999999999999999999999999999999955     


Q ss_pred             cccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeee---cCcceeEEEECC-CCCEEE
Q 014475          159 ESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV---FPSVIDAIALDP-AEHVFY  234 (424)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~---~~~~i~~~~~~~-~~~~l~  234 (424)
                            ...+..+.+|...|.+++|++++. ..|++++.|++|++||+++++....+.   +...+.+++|+| ++++++
T Consensus       159 ------~~~~~~~~~h~~~V~~~~~~~~~~-~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~  231 (344)
T 4gqb_B          159 ------QVVLSSYRAHAAQVTCVAASPHKD-SVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFV  231 (344)
T ss_dssp             ------TEEEEEECCCSSCEEEEEECSSCT-TEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEE
T ss_pred             ------CcEEEEEcCcCCceEEEEecCCCC-CceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceE
Confidence                  456778899999999999999874 578999999999999999999887765   455789999999 467889


Q ss_pred             EEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-C-CEEEEeCCCCcEEEEeCCCCcEEEEEeccCCC
Q 014475          235 AGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-G-DLLISGSEDGMVRVWDPITHNIVRMFRLAKGP  312 (424)
Q Consensus       235 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~-~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~  312 (424)
                      +|+.||.|++||++++         +++..+.+|...|++++|+| + ++|++|+.|++|+|||+++++++ .+.+|.+.
T Consensus       232 sg~~dg~v~~wd~~~~---------~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~-~~~~H~~~  301 (344)
T 4gqb_B          232 FGDENGTVSLVDTKST---------SCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELF-RSQAHRDF  301 (344)
T ss_dssp             EEETTSEEEEEESCC-----------CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEE-EECCCSSC
T ss_pred             EeccCCcEEEEECCCC---------cEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEE-EEcCCCCC
Confidence            9999999999999986         56778899999999999999 5 68999999999999999988765 56789999


Q ss_pred             eeEEEEEecCce-eeeccCCCceeeccCCCCCCCCC
Q 014475          313 VNNILVVRRPLY-LNLGSFSNPHTSSRRHGSQLPPP  347 (424)
Q Consensus       313 v~~l~~s~~~~~-l~~~~~d~~i~iw~~~~~~~~~~  347 (424)
                      |++++|+|+++. |++++.|+.|++|++.+..++.+
T Consensus       302 V~~v~~sp~~~~llas~s~D~~v~~w~v~~~~~~~p  337 (344)
T 4gqb_B          302 VRDATWSPLNHSLLTTVGWDHQVVHHVVPTEPLPAP  337 (344)
T ss_dssp             EEEEEECSSSTTEEEEEETTSCEEEEECCC------
T ss_pred             EEEEEEeCCCCeEEEEEcCCCeEEEEECCCCCCCCC
Confidence            999999999875 67899999999999987765544

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=4.7e-47  Score=340.75  Aligned_cols=286  Identities=20%  Similarity=0.324  Sum_probs=253.4

Q ss_pred             ceEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCceee-eecCCCCeeEEEECCCCCEEEEecCCC
Q 014475           24 AEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEV-KSLPAEPIKPIAANSHGTYIAGGGQSG  102 (424)
Q Consensus        24 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~~~~~dg  102 (424)
                      +...++++   |...|.+++  |+|+++++++++.| |+|++||..+++... ...|...|.+++|+|++++|++|+.|+
T Consensus        46 ~~~~~l~g---H~~~v~~~~--~s~d~~~l~s~s~D-g~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~  119 (340)
T 1got_B           46 RTRRTLRG---HLAKIYAMH--WGTDSRLLLSASQD-GKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDN  119 (340)
T ss_dssp             CEEEEECC---CSSCEEEEE--ECTTSSEEEEEETT-TEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTC
T ss_pred             hhheeecC---CCCceEEEE--ECCCCCEEEEEeCC-CcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCC
Confidence            34455554   557799999  99999999999998 999999998776553 356888999999999999999999999


Q ss_pred             cEEEEEccCc----ceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCce
Q 014475          103 DIYMWEVASG----RLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRI  178 (424)
Q Consensus       103 ~v~iwd~~~~----~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i  178 (424)
                      .|++|++.++    .....+.+|.+.|.++.|++++. +++++.|+.|++||+++           ...+..+.+|...|
T Consensus       120 ~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~~-----------~~~~~~~~~h~~~v  187 (340)
T 1got_B          120 ICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIET-----------GQQTTTFTGHTGDV  187 (340)
T ss_dssp             EEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETTE-EEEEETTSCEEEEETTT-----------TEEEEEECCCSSCE
T ss_pred             eEEEEECccCCCcceeEEEecCCCccEEEEEECCCCc-EEEEECCCcEEEEECCC-----------CcEEEEEcCCCCce
Confidence            9999999875    34566788999999999998775 89999999999999965           34567788999999


Q ss_pred             eEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeee-cCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCc
Q 014475          179 TDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSY  257 (424)
Q Consensus       179 ~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  257 (424)
                      .+++|+|++  .++++++.|+.|++||+++++....+. |...|.+++|+|++++|++|+.||.|++||++...      
T Consensus       188 ~~~~~~~~~--~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~------  259 (340)
T 1got_B          188 MSLSLAPDT--RLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQ------  259 (340)
T ss_dssp             EEEEECTTS--SEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE------
T ss_pred             EEEEECCCC--CEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCc------
Confidence            999999988  899999999999999999999888887 88899999999999999999999999999998863      


Q ss_pred             Cceeeeeec--ccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCCCcEEEEEeccCCCeeEEEEEecCceeeeccCCCce
Q 014475          258 GMHIIGSLS--DHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPH  334 (424)
Q Consensus       258 ~~~~~~~~~--~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~d~~i  334 (424)
                         .+..+.  .+...|++++|+| +++|++|+.||.|++||+.+++.+..+.+|.++|.+++|+|++.+|++|+.|+.|
T Consensus       260 ---~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i  336 (340)
T 1got_B          260 ---ELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFL  336 (340)
T ss_dssp             ---EEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCE
T ss_pred             ---EEEEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEeecCCCcEEEEEEcCCCCEEEEEcCCccE
Confidence               333332  3445799999999 9999999999999999999999999999999999999999999999999999999


Q ss_pred             eecc
Q 014475          335 TSSR  338 (424)
Q Consensus       335 ~iw~  338 (424)
                      ++|+
T Consensus       337 ~iWd  340 (340)
T 1got_B          337 KIWN  340 (340)
T ss_dssp             EEEC
T ss_pred             EecC
Confidence            9997

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=1.4e-46  Score=362.28  Aligned_cols=300  Identities=22%  Similarity=0.383  Sum_probs=271.0

Q ss_pred             EEeecCCCCCceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCceeeeecCCCCe
Q 014475            4 LIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSLPAEPI   83 (424)
Q Consensus         4 ~lat~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~~~~~~~v   83 (424)
                      +|++++ .|+.|++||. +++.+..+.+|   ...|.+++  |+|+++.+++++.+ |.|++||...........|..+|
T Consensus       276 ~l~~~~-~d~~i~~w~~-~~~~~~~~~~h---~~~v~~~~--~~~~~~~l~t~~~d-~~i~~w~~~~~~~~~~~~~~~~v  347 (577)
T 2ymu_A          276 TIASAS-DDKTVKLWNR-NGQLLQTLTGH---SSSVWGVA--FSPDGQTIASASDD-KTVKLWNRNGQHLQTLTGHSSSV  347 (577)
T ss_dssp             EEEEEE-TTSCEEEEET-TSCEEEEECCC---SSCEEEEE--ECTTSSEEEEEETT-SCEEEEETTSCEEEEECCCSSCE
T ss_pred             EEEEEe-CCCEEEEEeC-CCcEEEEEecC---CCCeEEEE--ECCCCCEEEEEeCC-CeEEEEeCCCCeeEEEeCCCCCE
Confidence            578888 9999999996 46777777654   46788888  99999999999987 99999999887777777889999


Q ss_pred             eEEEECCCCCEEEEecCCCcEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhccccc
Q 014475           84 KPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRA  163 (424)
Q Consensus        84 ~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~  163 (424)
                      .+++|+|++++|++++.||.|++||. +++.+..+.+|...|.+++|+|++++|++++.|+.|++||..           
T Consensus       348 ~~~~~s~~g~~l~~~~~dg~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~~-----------  415 (577)
T 2ymu_A          348 WGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN-----------  415 (577)
T ss_dssp             EEEEECTTSSEEEEEETTSEEEEEET-TCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTT-----------
T ss_pred             EEEEECCCCCEEEEEeCCCEEEEEcC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeCC-----------
Confidence            99999999999999999999999994 678888899999999999999999999999999999999963           


Q ss_pred             ccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeee-cCcceeEEEECCCCCEEEEEeCCCcE
Q 014475          164 SHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYAGSRDGSI  242 (424)
Q Consensus       164 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i  242 (424)
                       ...+..+.+|...|++++|+|++  .+|++++.|+.|++||.. ++.+..+. |...|.+++|+|++++|++++.|+.|
T Consensus       416 -~~~~~~~~~~~~~v~~~~~s~d~--~~l~~~~~d~~v~~w~~~-~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i  491 (577)
T 2ymu_A          416 -GQLLQTLTGHSSSVWGVAFSPDD--QTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTV  491 (577)
T ss_dssp             -CCEEEEEECCSSCEEEEEECTTS--SEEEEEETTSEEEEEETT-SCEEEEEECCSSCEEEEEECTTSCEEEEEETTSEE
T ss_pred             -CCEEEEecCCCCCeEEEEECCCC--CEEEEEcCCCEEEEEECC-CCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEE
Confidence             23466778999999999999998  899999999999999974 55555555 88999999999999999999999999


Q ss_pred             EEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCCCcEEEEEeccCCCeeEEEEEec
Q 014475          243 YIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRR  321 (424)
Q Consensus       243 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~  321 (424)
                      ++||...          +.+..+.+|...|++++|+| +++|++++.||.|++||. +++++..+.+|.++|++++|+||
T Consensus       492 ~iw~~~~----------~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~-~~~~~~~~~~h~~~v~~~~fs~d  560 (577)
T 2ymu_A          492 KLWNRNG----------QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPD  560 (577)
T ss_dssp             EEEETTS----------CEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEEECCSSCEEEEEECTT
T ss_pred             EEEcCCC----------CEEEEEeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeC-CCCEEEEEcCCCCCEEEEEEcCC
Confidence            9999643          56778889999999999999 999999999999999995 68999999999999999999999


Q ss_pred             CceeeeccCCCceeecc
Q 014475          322 PLYLNLGSFSNPHTSSR  338 (424)
Q Consensus       322 ~~~l~~~~~d~~i~iw~  338 (424)
                      +++|++++.|++|++||
T Consensus       561 g~~l~s~~~D~~i~~Wd  577 (577)
T 2ymu_A          561 GQTIASASSDKTVKLWN  577 (577)
T ss_dssp             SSCEEEEETTSCEEEEC
T ss_pred             CCEEEEEeCCCEEEEeC
Confidence            99999999999999997

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=3e-46  Score=337.06  Aligned_cols=289  Identities=19%  Similarity=0.309  Sum_probs=254.9

Q ss_pred             ceEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCcee-eeecCCCCeeEEEECCCCCEEEEecCCC
Q 014475           24 AEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVE-VKSLPAEPIKPIAANSHGTYIAGGGQSG  102 (424)
Q Consensus        24 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~dg  102 (424)
                      +...++++   |...|.+++  |+|++++|++++.| |+|++||..+.+.. ....|...|.+++|+|++.++++|+.|+
T Consensus        55 ~~~~~l~g---H~~~V~~~~--~s~d~~~l~s~s~D-g~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~  128 (354)
T 2pbi_B           55 KTRRTLKG---HGNKVLCMD--WCKDKRRIVSSSQD-GKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDN  128 (354)
T ss_dssp             CEEEEEEC---CSSCEEEEE--ECTTSSEEEEEETT-SEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTS
T ss_pred             EEEEEecC---CCCeEEEEE--ECCCCCEEEEEeCC-CeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCC
Confidence            34556665   456799999  99999999999998 99999998877654 3455788999999999999999999999


Q ss_pred             cEEEEEccCc------ceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcC
Q 014475          103 DIYMWEVASG------RLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTL  176 (424)
Q Consensus       103 ~v~iwd~~~~------~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (424)
                      .+++|++...      .....+..|...|.++.|+|+++.|++++.|++|++||+++           ...+..+.+|..
T Consensus       129 ~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~-----------~~~~~~~~~h~~  197 (354)
T 2pbi_B          129 KCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVES-----------GQLLQSFHGHGA  197 (354)
T ss_dssp             EEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTT-----------CCEEEEEECCSS
T ss_pred             CEEEEEEeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCC-----------CeEEEEEcCCCC
Confidence            9999998643      34556778999999999999999999999999999999955           345677889999


Q ss_pred             ceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeee-cCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCC
Q 014475          177 RITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTS  255 (424)
Q Consensus       177 ~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~  255 (424)
                      .|.++.++|+..++.|++++.||.|++||+++++++..+. |...|.+++|+|++.+|++++.|+.|++||++...    
T Consensus       198 ~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~----  273 (354)
T 2pbi_B          198 DVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADR----  273 (354)
T ss_dssp             CEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE----
T ss_pred             CeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCc----
Confidence            9999999986545899999999999999999999988887 88999999999999999999999999999998752    


Q ss_pred             CcCceeeeeec--ccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCCCcEEEEEeccCCCeeEEEEEecCceeeeccCCC
Q 014475          256 SYGMHIIGSLS--DHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSN  332 (424)
Q Consensus       256 ~~~~~~~~~~~--~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~d~  332 (424)
                           .+..+.  .+...+.+++|+| +.+|++|+.|+.|++||+.+++.+..+.+|.++|++++|+|++++|++|+.|+
T Consensus       274 -----~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~sgs~D~  348 (354)
T 2pbi_B          274 -----EVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDH  348 (354)
T ss_dssp             -----EEEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSCEEEEETTS
T ss_pred             -----EEEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEECCCCcEEEEEECCCCCEEEEEcCCC
Confidence                 333333  3345789999999 99999999999999999999999999999999999999999999999999999


Q ss_pred             ceeecc
Q 014475          333 PHTSSR  338 (424)
Q Consensus       333 ~i~iw~  338 (424)
                      .|++|+
T Consensus       349 ~v~vW~  354 (354)
T 2pbi_B          349 TLRVWA  354 (354)
T ss_dssp             EEEEEC
T ss_pred             CEEecC
Confidence            999996

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=1.2e-46  Score=332.75  Aligned_cols=290  Identities=18%  Similarity=0.267  Sum_probs=253.6

Q ss_pred             eEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCceee-eecCCCCeeEEEECCCCCEEEEecCCCc
Q 014475           25 EQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEV-KSLPAEPIKPIAANSHGTYIAGGGQSGD  103 (424)
Q Consensus        25 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~~~~~dg~  103 (424)
                      ..+++.+|   ...|.+++  |+|+++++++++.| |.|++||+.++.... ...|..+|.+++|+|++++|++|+.|+.
T Consensus         5 ~~~~~~~h---~~~V~~~~--fsp~~~~l~s~~~d-g~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~   78 (304)
T 2ynn_A            5 IKKTFSNR---SDRVKGID--FHPTEPWVLTTLYS-GRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFR   78 (304)
T ss_dssp             CEEEEEEE---CSCEEEEE--ECSSSSEEEEEETT-SEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSE
T ss_pred             eEEeecCC---CCceEEEE--ECCCCCEEEEEcCC-CcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCE
Confidence            45566654   46789999  99999999999998 999999999876543 3568889999999999999999999999


Q ss_pred             EEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEE
Q 014475          104 IYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVI  183 (424)
Q Consensus       104 v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  183 (424)
                      |++||+++++.+..+.+|...|.+++|+|++++|++|+.||.|++||++++          ......+.+|...|.+++|
T Consensus        79 i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~----------~~~~~~~~~h~~~v~~v~~  148 (304)
T 2ynn_A           79 IRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENN----------WALEQTFEGHEHFVMCVAF  148 (304)
T ss_dssp             EEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGT----------TEEEEEECCCCSCEEEEEE
T ss_pred             EEEEECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCC----------cchhhhhcccCCcEEEEEE
Confidence            999999999999999999999999999999999999999999999999542          2345678899999999999


Q ss_pred             EEcCceeEEEEEeCCCcEEEEecCCCceeeeee--cCcceeEEEECC--CCCEEEEEeCCCcEEEEEcCCCCCCCCCcCc
Q 014475          184 GYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV--FPSVIDAIALDP--AEHVFYAGSRDGSIYIAALNAESPSTSSYGM  259 (424)
Q Consensus       184 ~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~--~~~~i~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~  259 (424)
                      +|... ..|++++.|++|++||++++.....+.  +...+..++++|  ++.+|++++.|+.|++||++++         
T Consensus       149 ~p~~~-~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~---------  218 (304)
T 2ynn_A          149 NPKDP-STFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTK---------  218 (304)
T ss_dssp             CTTCT-TEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTT---------
T ss_pred             CCCCC-CEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCC---------
Confidence            98432 799999999999999998887766655  557889999987  7789999999999999999986         


Q ss_pred             eeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCCCcEEEEEeccCCCeeEEEEEecCc--eeeeccCCCceee
Q 014475          260 HIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPL--YLNLGSFSNPHTS  336 (424)
Q Consensus       260 ~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~--~l~~~~~d~~i~i  336 (424)
                      .++..+.+|...|.+++|+| +.+|++|+.||.|++||++++++++.+..|...+.+++|+|++.  ++++|+.|| +.+
T Consensus       219 ~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asg~~~g-~~~  297 (304)
T 2ynn_A          219 SCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNG-FTV  297 (304)
T ss_dssp             EEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCSSSSEEEEEECTTCGGGCEEEEETTE-EEE
T ss_pred             ccceeeCCCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeeccCCCccEEEEEECCCCCceEEEEecCCc-eEE
Confidence            67888999999999999999 89999999999999999999999999999999999999999875  466665544 666


Q ss_pred             ccCCC
Q 014475          337 SRRHG  341 (424)
Q Consensus       337 w~~~~  341 (424)
                      |++..
T Consensus       298 ~~~~~  302 (304)
T 2ynn_A          298 LSLGN  302 (304)
T ss_dssp             EECC-
T ss_pred             EEecc
Confidence            66553

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=1.1e-46  Score=338.88  Aligned_cols=310  Identities=15%  Similarity=0.175  Sum_probs=251.3

Q ss_pred             ceEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCcee----eeecCCCCeeEEEECCCCCEEEEec
Q 014475           24 AEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVE----VKSLPAEPIKPIAANSHGTYIAGGG   99 (424)
Q Consensus        24 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~----~~~~~~~~v~~~~~s~~~~~l~~~~   99 (424)
                      +++.++++|..  ..+.+++  |+|+|++|++++.| ++|++||+.++...    ....|...|.+++|+|++++|++|+
T Consensus         6 ~~~~~~~~h~~--~~v~~l~--~sp~g~~las~~~D-~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s   80 (345)
T 3fm0_A            6 VLLGRVPAHPD--SRCWFLA--WNPAGTLLASCGGD-RRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASAS   80 (345)
T ss_dssp             EEEEEECCSTT--SCEEEEE--ECTTSSCEEEEETT-SCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEE
T ss_pred             EEeeeecCCCC--CcEEEEE--ECCCCCEEEEEcCC-CeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEE
Confidence            45556665532  2788899  99999999999998 99999999877532    2246889999999999999999999


Q ss_pred             CCCcEEEEEccCc--ceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCc
Q 014475          100 QSGDIYMWEVASG--RLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLR  177 (424)
Q Consensus       100 ~dg~v~iwd~~~~--~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (424)
                      .|+.+++||+.++  +.+..+.+|...|.+++|+|++++|++|+.|+.|++||+++.        .....+..+.+|...
T Consensus        81 ~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~--------~~~~~~~~~~~h~~~  152 (345)
T 3fm0_A           81 FDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEE--------DEYECVSVLNSHTQD  152 (345)
T ss_dssp             TTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTT--------SCEEEEEEECCCCSC
T ss_pred             CCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCC--------CCeEEEEEecCcCCC
Confidence            9999999999876  457788999999999999999999999999999999999652        122345677899999


Q ss_pred             eeEEEEEEcCceeEEEEEeCCCcEEEEecCCCcee--eeee-cCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCC
Q 014475          178 ITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLL--RNIV-FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPST  254 (424)
Q Consensus       178 i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~--~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~  254 (424)
                      |.+++|+|++  .+|++++.|+.|++||.++++..  ..+. |...|.+++|+|++++|++++.|+.|++|+........
T Consensus       153 v~~~~~~p~~--~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~  230 (345)
T 3fm0_A          153 VKHVVWHPSQ--ELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQ  230 (345)
T ss_dssp             EEEEEECSSS--SCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTT
T ss_pred             eEEEEECCCC--CEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCc
Confidence            9999999998  89999999999999999887533  3444 78899999999999999999999999999975432211


Q ss_pred             C------CcCceeeeeecc-cCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCCCc---------EEEEEeccCCCeeEEE
Q 014475          255 S------SYGMHIIGSLSD-HSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHN---------IVRMFRLAKGPVNNIL  317 (424)
Q Consensus       255 ~------~~~~~~~~~~~~-~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~---------~~~~~~~~~~~v~~l~  317 (424)
                      .      .....++..+.+ |...|.+++|+| +..|++++.|+.|++|+...+.         ......+|.+.|++++
T Consensus       231 ~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~  310 (345)
T 3fm0_A          231 GVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVA  310 (345)
T ss_dssp             CCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEE
T ss_pred             cceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeE
Confidence            1      111233444554 889999999999 9999999999999999987542         1223357899999999


Q ss_pred             EEecC-ceeeeccCCCceeeccCCCCCCCCCc
Q 014475          318 VVRRP-LYLNLGSFSNPHTSSRRHGSQLPPPL  348 (424)
Q Consensus       318 ~s~~~-~~l~~~~~d~~i~iw~~~~~~~~~~~  348 (424)
                      |+|++ .+|++|+.||.|++|+....+.+.++
T Consensus       311 ~~p~~~~~laS~s~Dg~v~~W~~~~~~~~~~~  342 (345)
T 3fm0_A          311 WNPKEPGLLASCSDDGEVAFWKYQRPEGLHHH  342 (345)
T ss_dssp             ECSSSTTEEEEEETTSCEEEEEECC-------
T ss_pred             EeCCCceEEEEcCCCCcEEEEEecCCCCcccc
Confidence            99998 48999999999999999987765544

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=1.6e-46  Score=342.46  Aligned_cols=303  Identities=19%  Similarity=0.282  Sum_probs=258.5

Q ss_pred             CceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCcee-eeecCCCCeeEEEECCC
Q 014475           13 TGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVE-VKSLPAEPIKPIAANSH   91 (424)
Q Consensus        13 g~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~-~~~~~~~~v~~~~~s~~   91 (424)
                      ..+..|+.......+++++|   ...|.+++  |+|++++|++++.| |+|++||..+++.. ....|...|.+++|+|+
T Consensus        46 ~~~~~~~~~~~~~~~~l~gH---~~~V~~~~--~sp~~~~l~s~s~D-~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~  119 (380)
T 3iz6_a           46 RTAVSFNPTDLVCCRTLQGH---SGKVYSLD--WTPEKNWIVSASQD-GRLIVWNALTSQKTHAIKLHCPWVMECAFAPN  119 (380)
T ss_dssp             GGCCCCCCCCCEEEEEECCC---SSCEEEEE--ECTTSSCEEEEETT-SEEEEEETTTTEEEEEEECCCTTCCCCEECTT
T ss_pred             ccccccccceeEEeeccccc---ccEEEEEE--EcCCCCEEEEEeCC-CeEEEEECCCCccceEEecCCCCEEEEEECCC
Confidence            45667888888888888765   46789999  99999999999998 99999999887655 34568889999999999


Q ss_pred             CCEEEEecCCCcEEEEEccCcc-------eeeeeccccCCeEEEEEccC-CcEEEEeeCCCcEEEEeCCcccchhccccc
Q 014475           92 GTYIAGGGQSGDIYMWEVASGR-------LLKKWHAHYRAVTCLVFSED-GSFLISGSEDGCVRIWSLLTVFEECESQRA  163 (424)
Q Consensus        92 ~~~l~~~~~dg~v~iwd~~~~~-------~~~~~~~~~~~i~~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~  163 (424)
                      +++|++|+.|+.+++||+.+..       ....+.+|.+.|.++.|.|+ +..|++|+.|+.|++||++++.        
T Consensus       120 g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~--------  191 (380)
T 3iz6_a          120 GQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQ--------  191 (380)
T ss_dssp             SSEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCC--------
T ss_pred             CCEEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCc--------
Confidence            9999999999999999996532       34567899999999999996 4579999999999999997632        


Q ss_pred             ccceEEee-----cCCcCceeEEEEEE-cCceeEEEEEeCCCcEEEEecC-CCceeeeee-cCcceeEEEECCCCCEEEE
Q 014475          164 SHLYLHSF-----TGHTLRITDIVIGY-GGVSATIVSASEDRTCKVWSLL-KGRLLRNIV-FPSVIDAIALDPAEHVFYA  235 (424)
Q Consensus       164 ~~~~~~~~-----~~~~~~i~~~~~~~-~~~~~~l~~~~~d~~v~iwd~~-~~~~~~~~~-~~~~i~~~~~~~~~~~l~~  235 (424)
                         .+..+     .+|...|.++.+++ ++  +.+++|+.|++|++||++ .++.+..+. |...|.+++|+|++.+|++
T Consensus       192 ---~~~~~~~~~~~~h~~~v~~~~~~~~~~--~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s  266 (380)
T 3iz6_a          192 ---RISIFGSEFPSGHTADVLSLSINSLNA--NMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGT  266 (380)
T ss_dssp             ---EEEEECCCSSSSCCSCEEEEEECSSSC--CEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEE
T ss_pred             ---EEEEeecccCCCCccCeEEEEeecCCC--CEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEE
Confidence               22222     57899999999987 44  899999999999999998 446666665 8899999999999999999


Q ss_pred             EeCCCcEEEEEcCCCCCCCCCcCceeeeeecc-------cCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCCCcEEEEE-
Q 014475          236 GSRDGSIYIAALNAESPSTSSYGMHIIGSLSD-------HSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMF-  306 (424)
Q Consensus       236 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~-------~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~~~~~-  306 (424)
                      |+.||.|++||++++.         .+..+..       +...|++++|+| +++|++|+.||.|++||+.+++.+..+ 
T Consensus       267 ~s~D~~i~lwd~~~~~---------~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~  337 (380)
T 3iz6_a          267 GSDDGTCRLFDMRTGH---------QLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLG  337 (380)
T ss_dssp             ECSSSCEEEEETTTTE---------EEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEEC
T ss_pred             EcCCCeEEEEECCCCc---------EEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEe
Confidence            9999999999999863         3333332       233589999999 999999999999999999999988887 


Q ss_pred             ---eccCCCeeEEEEEecCceeeeccCCCceeeccCCCCC
Q 014475          307 ---RLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGSQ  343 (424)
Q Consensus       307 ---~~~~~~v~~l~~s~~~~~l~~~~~d~~i~iw~~~~~~  343 (424)
                         .+|.+.|++++|+|++++|++|+.|+.|++|++.+.+
T Consensus       338 ~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~~~  377 (380)
T 3iz6_a          338 TLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFSGHR  377 (380)
T ss_dssp             CSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEECCSSS
T ss_pred             cccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEecCCCc
Confidence               6799999999999999999999999999999988653

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=8.9e-45  Score=322.84  Aligned_cols=284  Identities=19%  Similarity=0.290  Sum_probs=244.8

Q ss_pred             CCCCCceEEecceeecCC-CccccCCCCceeEEEEECCCCc------eeeeecCCCCeeEEEECCCCCEEEEecCCCcEE
Q 014475           33 ASPPHGLACVGQRFLASS-QLREQPSASSGSILYWSWSKPQ------VEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIY  105 (424)
Q Consensus        33 ~~~~~~v~~~~~~~~~~~-~~l~~~~~~~g~i~vwd~~~~~------~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~  105 (424)
                      .+|...|.+++  |+|++ ++|++++.| ++|++|++....      ......|...|.+++|+|++++|++|+.|++|+
T Consensus        14 ~gH~~~V~~l~--~~~~~~~~l~s~s~D-~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~   90 (319)
T 3frx_A           14 EGHNGWVTSLA--TSAGQPNLLLSASRD-KTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLR   90 (319)
T ss_dssp             CCCSSCEEEEE--ECSSCTTEEEEEETT-SEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred             ccccceEEEEE--ccCCCccEEEEecCC-ccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCCEEE
Confidence            34567789998  99976 788888887 999999986432      123356899999999999999999999999999


Q ss_pred             EEEccCcceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEE
Q 014475          106 MWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGY  185 (424)
Q Consensus       106 iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  185 (424)
                      +||+++++.+..+.+|...|.+++|+|++++|++|+.|+.|++||++.            ..+..+.+|...|.++.+.|
T Consensus        91 ~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~------------~~~~~~~~h~~~v~~~~~~~  158 (319)
T 3frx_A           91 LWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKG------------QCLATLLGHNDWVSQVRVVP  158 (319)
T ss_dssp             EEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTS------------CEEEEECCCSSCEEEEEECC
T ss_pred             EEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC------------CeEEEEeccCCcEEEEEEcc
Confidence            999999999999999999999999999999999999999999999843            24567789999999999988


Q ss_pred             cC----ceeEEEEEeCCCcEEEEecCCCceeeeee-cCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCce
Q 014475          186 GG----VSATIVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMH  260 (424)
Q Consensus       186 ~~----~~~~l~~~~~d~~v~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~  260 (424)
                      ..    ++..+++++.|+.|++||+++.+....+. |...|.+++|+|++++|++++.||.|++||+...         +
T Consensus       159 ~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~---------~  229 (319)
T 3frx_A          159 NEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAK---------K  229 (319)
T ss_dssp             C------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTT---------E
T ss_pred             CCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC---------c
Confidence            54    12589999999999999999988877776 8899999999999999999999999999999986         4


Q ss_pred             eeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCCCcEEEEEec--------cCCCeeEEEEEecCceeeeccCC
Q 014475          261 IIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRL--------AKGPVNNILVVRRPLYLNLGSFS  331 (424)
Q Consensus       261 ~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~~~~~~~--------~~~~v~~l~~s~~~~~l~~~~~d  331 (424)
                      .+..+.. ...|.+++|+| +.++++++.+ .+++|++..+..+..+..        |...+.+++|+|+|++|++|+.|
T Consensus       230 ~~~~~~~-~~~v~~~~~sp~~~~la~~~~~-~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~D  307 (319)
T 3frx_A          230 AMYTLSA-QDEVFSLAFSPNRYWLAAATAT-GIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTD  307 (319)
T ss_dssp             EEEEEEC-CSCEEEEEECSSSSEEEEEETT-EEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETT
T ss_pred             EEEEecC-CCcEEEEEEcCCCCEEEEEcCC-CcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEEEEeecC
Confidence            5555554 46899999999 8888887754 599999998887777653        45678999999999999999999


Q ss_pred             CceeeccCCCC
Q 014475          332 NPHTSSRRHGS  342 (424)
Q Consensus       332 ~~i~iw~~~~~  342 (424)
                      |.|++|++.+.
T Consensus       308 g~i~vWd~~t~  318 (319)
T 3frx_A          308 NVIRVWQVMTA  318 (319)
T ss_dssp             SCEEEEEEEEC
T ss_pred             ceEEEEEEeec
Confidence            99999998753

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=2.3e-44  Score=319.56  Aligned_cols=282  Identities=22%  Similarity=0.370  Sum_probs=251.7

Q ss_pred             CCCCceEEecceeecCCCccccCCCCceeEEEEECCCCceee-eecCCCCeeEEEECCCCCEEEEecCCCcEEEEEccCc
Q 014475           34 SPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEV-KSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASG  112 (424)
Q Consensus        34 ~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~  112 (424)
                      +|...|.+++  |+|+++++++++.| |.|++|+..+++... ...|...|.+++|+|++++|++|+.||.|++||++++
T Consensus        21 gh~~~v~~~~--~s~~~~~l~s~~~d-g~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~   97 (312)
T 4ery_A           21 GHTKAVSSVK--FSPNGEWLASSSAD-KLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG   97 (312)
T ss_dssp             CCSSCEEEEE--ECTTSSEEEEEETT-SCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTC
T ss_pred             ccCCcEEEEE--ECCCCCEEEEeeCC-CeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCCC
Confidence            4557899999  99999999999988 999999998776553 3568899999999999999999999999999999999


Q ss_pred             ceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEE
Q 014475          113 RLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATI  192 (424)
Q Consensus       113 ~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l  192 (424)
                      +.+..+.+|...|.++.|+|++++|++++.||.|++||+++           ...+..+..|..+|.+++|++++  .++
T Consensus        98 ~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~-----------~~~~~~~~~~~~~v~~~~~~~~~--~~l  164 (312)
T 4ery_A           98 KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT-----------GKCLKTLPAHSDPVSAVHFNRDG--SLI  164 (312)
T ss_dssp             CEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTT-----------CCEEEEECCCSSCEEEEEECTTS--SEE
T ss_pred             cEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC-----------CEEEEEecCCCCcEEEEEEcCCC--CEE
Confidence            99999999999999999999999999999999999999965           34566788899999999999988  899


Q ss_pred             EEEeCCCcEEEEecCCCceeeeee--cCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCc
Q 014475          193 VSASEDRTCKVWSLLKGRLLRNIV--FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSK  270 (424)
Q Consensus       193 ~~~~~d~~v~iwd~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~  270 (424)
                      ++++.|+.|++||+++++.+..+.  +...+..++|+|+++++++++.|+.|++||++++         +.+..+.+|..
T Consensus       165 ~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~---------~~~~~~~~~~~  235 (312)
T 4ery_A          165 VSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKG---------KCLKTYTGHKN  235 (312)
T ss_dssp             EEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTT---------EEEEEECSSCC
T ss_pred             EEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCC---------cEEEEEEecCC
Confidence            999999999999999998877764  5567999999999999999999999999999886         55667777765


Q ss_pred             CeEE--EEec-C-CCEEEEeCCCCcEEEEeCCCCcEEEEEeccCCCeeEEEEEecCceeeecc--CCCceeeccCC
Q 014475          271 AVTC--LAYS-T-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGS--FSNPHTSSRRH  340 (424)
Q Consensus       271 ~i~~--~~~~-~-~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~--~d~~i~iw~~~  340 (424)
                      .+.+  ..++ + +.+|++|+.||.|++||+.+++.+..+.+|...|.+++|+|++++|++++  .|+.|++|+..
T Consensus       236 ~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~d  311 (312)
T 4ery_A          236 EKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD  311 (312)
T ss_dssp             SSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEECCCSSCEEEEEECSSSSEEEEEECTTTCCEEEEECC
T ss_pred             ceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhhhccCCcEEEEeecCcCCceEEEEccCCccEEEecCC
Confidence            4332  2343 4 88999999999999999999999999999999999999999999999886  69999999864

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1e-44  Score=324.01  Aligned_cols=302  Identities=16%  Similarity=0.176  Sum_probs=239.1

Q ss_pred             CCceEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCce--ee-e-ec-CCCCeeEEEECCCCCEEE
Q 014475           22 SGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQV--EV-K-SL-PAEPIKPIAANSHGTYIA   96 (424)
Q Consensus        22 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~--~~-~-~~-~~~~v~~~~~s~~~~~l~   96 (424)
                      +.+.+.++++|   ...|.+++  |+|+  +|++++.| ++|++||+..+..  .. . .. |..+|.+++|+|++++|+
T Consensus         3 ~~~~~~~~~~h---~~~v~~~~--~s~~--~las~~~D-~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~la   74 (330)
T 2hes_X            3 SINLIKSLKLY---KEKIWSFD--FSQG--ILATGSTD-RKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLA   74 (330)
T ss_dssp             CCEEEEEEECC---SSCEEEEE--EETT--EEEEEESS-SCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEE
T ss_pred             ccccceeeccC---CCceeeec--cCCC--EEEEEcCC-CEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEE
Confidence            45566777765   46788888  9887  88888887 9999999987532  21 1 23 889999999999999999


Q ss_pred             EecCCCcEEEEEccC-------cceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEE
Q 014475           97 GGGQSGDIYMWEVAS-------GRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLH  169 (424)
Q Consensus        97 ~~~~dg~v~iwd~~~-------~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~  169 (424)
                      +|+.|+.|++||++.       .+.+..+.+|...|.+++|+|++++|++|+.|+.|++||++...       .....+.
T Consensus        75 s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~-------~~~~~~~  147 (330)
T 2hes_X           75 AGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESG-------EEYECIS  147 (330)
T ss_dssp             EEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTC-------CCCEEEE
T ss_pred             EEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCC-------CCeEEEE
Confidence            999999999999853       34567788999999999999999999999999999999995311       1234566


Q ss_pred             eecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCC--ceeeeee-cCcceeEEEECCC--CCEEEEEeCCCcEEE
Q 014475          170 SFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKG--RLLRNIV-FPSVIDAIALDPA--EHVFYAGSRDGSIYI  244 (424)
Q Consensus       170 ~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~--~~~~~~~-~~~~i~~~~~~~~--~~~l~~~~~dg~i~i  244 (424)
                      .+.+|...|.+++|+|++  .+|++++.|++|++||..++  +++..+. |...|.+++|+|+  +..|++++.|+.|++
T Consensus       148 ~~~~h~~~v~~v~~~p~~--~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~i  225 (330)
T 2hes_X          148 VLQEHSQDVKHVIWHPSE--ALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRV  225 (330)
T ss_dssp             EECCCSSCEEEEEECSSS--SEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEE
T ss_pred             EeccCCCceEEEEECCCC--CEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEE
Confidence            788999999999999998  89999999999999998776  4566665 8899999999998  678999999999999


Q ss_pred             EEcCCCCCCCCCcCceeeeeecc-cCcCeEEEEecCCCEEEEeCCCCcEEEEeCCCCc--EEEE-EeccCC-CeeEEEEE
Q 014475          245 AALNAESPSTSSYGMHIIGSLSD-HSKAVTCLAYSTGDLLISGSEDGMVRVWDPITHN--IVRM-FRLAKG-PVNNILVV  319 (424)
Q Consensus       245 ~d~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~l~t~~~dg~i~iwd~~~~~--~~~~-~~~~~~-~v~~l~~s  319 (424)
                      ||++...... ...+.....+.. |...|.+++|+++.+|++++.||.|++||..+++  .+.. ..+|.. .|.+++|+
T Consensus       226 w~~~~~~~~~-~~~~~~~~~~~~~h~~~v~~v~~s~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~  304 (330)
T 2hes_X          226 WKYMGDDEDD-QQEWVCEAILPDVHKRQVYNVAWGFNGLIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWL  304 (330)
T ss_dssp             EEEEEECTTS-CEEEEEEEECCSCCSSCEEEEEECTTSCEEEEETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC
T ss_pred             EEecCCCccc-cceeEEeeecccccccceEEEEEcCCCEEEEEeCCCEEEEEEcCCCceEEEeccccccccceEEEEEEe
Confidence            9997643211 111133444444 8999999999997799999999999999998774  3333 356876 89999999


Q ss_pred             e--cCceeeeccCCCceeeccCCC
Q 014475          320 R--RPLYLNLGSFSNPHTSSRRHG  341 (424)
Q Consensus       320 ~--~~~~l~~~~~d~~i~iw~~~~  341 (424)
                      |  ++++|++|+.||.|++|++..
T Consensus       305 ~~~~~~~las~s~Dg~v~~W~~~~  328 (330)
T 2hes_X          305 ELNGKTILATGGDDGIVNFWSLEK  328 (330)
T ss_dssp             -----CCEEEEETTSEEEEEEC--
T ss_pred             cCCCceEEEEecCCCcEEEEEecc
Confidence            9  789999999999999999864

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=2.5e-44  Score=346.61  Aligned_cols=303  Identities=23%  Similarity=0.396  Sum_probs=270.2

Q ss_pred             EEeecCCCCCceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCceeeeecCCCCe
Q 014475            4 LIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSLPAEPI   83 (424)
Q Consensus         4 ~lat~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~~~~~~~v   83 (424)
                      +|++++ .|+.|++||. +++.+..+.+|   ...|.+++  |+|+++.+++++.+ +.|++|+...........|..+|
T Consensus       235 ~l~~~~-~d~~i~~w~~-~~~~~~~~~~~---~~~v~~v~--~~~d~~~l~~~~~d-~~i~~w~~~~~~~~~~~~h~~~v  306 (577)
T 2ymu_A          235 TIASAS-DDKTVKLWNR-NGQLLQTLTGH---SSSVNGVA--FRPDGQTIASASDD-KTVKLWNRNGQLLQTLTGHSSSV  306 (577)
T ss_dssp             CEEEEE-TTSCEEEECT-TSCEEEEECCC---SSCEEEEE--ECTTSSEEEEEETT-SCEEEEETTSCEEEEECCCSSCE
T ss_pred             EEEEEe-CCCEEEEEeC-CCCEEEEEecC---CCCEEEEE--EcCCCCEEEEEeCC-CEEEEEeCCCcEEEEEecCCCCe
Confidence            578899 9999999995 57777777654   46788888  99999999999987 99999998766665667789999


Q ss_pred             eEEEECCCCCEEEEecCCCcEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhccccc
Q 014475           84 KPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRA  163 (424)
Q Consensus        84 ~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~  163 (424)
                      .+++|+|+++++++++.||.|++||.. +..+..+.+|...|.+++|+|+++++++++.||.|++||..           
T Consensus       307 ~~~~~~~~~~~l~t~~~d~~i~~w~~~-~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~-----------  374 (577)
T 2ymu_A          307 WGVAFSPDGQTIASASDDKTVKLWNRN-GQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN-----------  374 (577)
T ss_dssp             EEEEECTTSSEEEEEETTSCEEEEETT-SCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETT-----------
T ss_pred             EEEEECCCCCEEEEEeCCCeEEEEeCC-CCeeEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcCC-----------
Confidence            999999999999999999999999975 45567788899999999999999999999999999999963           


Q ss_pred             ccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeee-cCcceeEEEECCCCCEEEEEeCCCcE
Q 014475          164 SHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYAGSRDGSI  242 (424)
Q Consensus       164 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i  242 (424)
                       ...+..+.+|...|.+++|+|++  ++|++++.|+.|++||. +++.+..+. |...|.+++|+|++++|++++.|+.|
T Consensus       375 -~~~~~~~~~~~~~v~~~~~s~dg--~~l~~~~~d~~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v  450 (577)
T 2ymu_A          375 -GQLLQTLTGHSSSVRGVAFSPDG--QTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTV  450 (577)
T ss_dssp             -CCEEEEEECCSSCEEEEEECTTS--SCEEEEETTSEEEEECT-TCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred             -CCEEEEecCCCCCeEEEEECCCC--CEEEEEeCCCEEEEEeC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEE
Confidence             23456778899999999999998  89999999999999996 456666665 88999999999999999999999999


Q ss_pred             EEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCCCcEEEEEeccCCCeeEEEEEec
Q 014475          243 YIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRR  321 (424)
Q Consensus       243 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~  321 (424)
                      ++||...          +.+..+.+|...|++++|+| +++|++++.|+.|++|| .++++++.+.+|..+|++++|+|+
T Consensus       451 ~~w~~~~----------~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~-~~~~~~~~~~~h~~~v~~l~~s~d  519 (577)
T 2ymu_A          451 KLWNRNG----------QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPD  519 (577)
T ss_dssp             EEEETTS----------CEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEE-TTSCEEEEEECCSSCEEEEEECTT
T ss_pred             EEEECCC----------CEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEc-CCCCEEEEEeCCCCCEEEEEEcCC
Confidence            9999754          45677889999999999999 99999999999999999 468999999999999999999999


Q ss_pred             CceeeeccCCCceeeccCCC
Q 014475          322 PLYLNLGSFSNPHTSSRRHG  341 (424)
Q Consensus       322 ~~~l~~~~~d~~i~iw~~~~  341 (424)
                      +++|++++.||.|++||..+
T Consensus       520 g~~l~s~~~dg~v~lwd~~~  539 (577)
T 2ymu_A          520 GQTIASASDDKTVKLWNRNG  539 (577)
T ss_dssp             SSCEEEEETTSEEEEECTTS
T ss_pred             CCEEEEEECcCEEEEEeCCC
Confidence            99999999999999999653

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=1.5e-44  Score=321.24  Aligned_cols=268  Identities=20%  Similarity=0.353  Sum_probs=241.4

Q ss_pred             EEeecCCCCCceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCceeee-ecCCCC
Q 014475            4 LIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVK-SLPAEP   82 (424)
Q Consensus         4 ~lat~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~-~~~~~~   82 (424)
                      +||||+ .|++|+|||+.+++..... ...+|...|.+++  |++++..+++++.| ++|++||+.+++.... ..+...
T Consensus        50 ~l~tgs-~D~~v~vW~~~~~~~~~~~-~l~gh~~~v~~~~--~~~~~~~l~s~s~D-~~i~lWd~~~~~~~~~~~~~~~~  124 (321)
T 3ow8_A           50 TVVTGS-LDDLVKVWKWRDERLDLQW-SLEGHQLGVVSVD--ISHTLPIAASSSLD-AHIRLWDLENGKQIKSIDAGPVD  124 (321)
T ss_dssp             EEEEEE-TTSCEEEEEEETTEEEEEE-EECCCSSCEEEEE--ECSSSSEEEEEETT-SEEEEEETTTTEEEEEEECCTTC
T ss_pred             EEEEEc-CCCCEEEEECCCCCeeeee-eeccCCCCEEEEE--ECCCCCEEEEEeCC-CcEEEEECCCCCEEEEEeCCCcc
Confidence            699999 9999999999877643322 2234667899999  99999999999998 9999999998876543 456778


Q ss_pred             eeEEEECCCCCEEEEecCCCcEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccc
Q 014475           83 IKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQR  162 (424)
Q Consensus        83 v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~  162 (424)
                      +.+++|+|++++|++|+.||.|++|++++++....+..|...|.+++|+|++++|++|+.||.|++||+++         
T Consensus       125 ~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~---------  195 (321)
T 3ow8_A          125 AWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIAT---------  195 (321)
T ss_dssp             CCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTT---------
T ss_pred             EEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCC---------
Confidence            99999999999999999999999999999999999999999999999999999999999999999999965         


Q ss_pred             cccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeee-cCcceeEEEECCCCCEEEEEeCCCc
Q 014475          163 ASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYAGSRDGS  241 (424)
Q Consensus       163 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~  241 (424)
                        ...+..+.+|..+|.+++|+|++  .+|++++.|+.|++||+++++....+. |...|.+++|+|++.+|++++.|+.
T Consensus       196 --~~~~~~~~~h~~~v~~l~~spd~--~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~  271 (321)
T 3ow8_A          196 --GKLLHTLEGHAMPIRSLTFSPDS--QLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKS  271 (321)
T ss_dssp             --TEEEEEECCCSSCCCEEEECTTS--CEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred             --CcEEEEEcccCCceeEEEEcCCC--CEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEEECCCCCEEEEEeCCCc
Confidence              34567788999999999999998  899999999999999999998888877 8889999999999999999999999


Q ss_pred             EEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCC
Q 014475          242 IYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPI  298 (424)
Q Consensus       242 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~  298 (424)
                      |++||++++         .++..+.+|...|.+++|+| +.+|++++.||.|++||..
T Consensus       272 v~iwd~~~~---------~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~p  320 (321)
T 3ow8_A          272 VKVWDVGTR---------TCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDCP  320 (321)
T ss_dssp             EEEEETTTT---------EEEEEECCCSSCEEEEEECTTSSEEEEEETTCCEEEEECC
T ss_pred             EEEEeCCCC---------EEEEEEcCCCCcEEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence            999999886         67888889999999999999 9999999999999999963

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=5.3e-45  Score=335.60  Aligned_cols=269  Identities=22%  Similarity=0.361  Sum_probs=243.2

Q ss_pred             EEEeecCCCCCceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCceee-eecCCC
Q 014475            3 LLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEV-KSLPAE   81 (424)
Q Consensus         3 ~~lat~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~-~~~~~~   81 (424)
                      .+||+|+ .||+|+|||+++++...++++|.   ..|.+++  |+|+++++++++.| |+|++||+.+.+... ...|..
T Consensus       121 ~~l~s~s-~Dg~i~vwd~~~~~~~~~l~~h~---~~V~~v~--~~~~~~~l~sgs~D-~~i~iwd~~~~~~~~~~~~h~~  193 (410)
T 1vyh_C          121 SVMVSAS-EDATIKVWDYETGDFERTLKGHT---DSVQDIS--FDHSGKLLASCSAD-MTIKLWDFQGFECIRTMHGHDH  193 (410)
T ss_dssp             SEEEEEE-SSSCEEEEETTTCCCCEEECCCS---SCEEEEE--ECTTSSEEEEEETT-SCCCEEETTSSCEEECCCCCSS
T ss_pred             CEEEEEe-CCCeEEEEECCCCcEEEEEeccC---CcEEEEE--EcCCCCEEEEEeCC-CeEEEEeCCCCceeEEEcCCCC
Confidence            3689999 99999999999999998887654   6788888  99999999999998 999999998876543 356889


Q ss_pred             CeeEEEECCCCCEEEEecCCCcEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhccc
Q 014475           82 PIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQ  161 (424)
Q Consensus        82 ~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~  161 (424)
                      .|.+++|+|++++|++|+.|+.|++||++++.++..+.+|...|.++.|+|++++|++|+.||.|++||+.+        
T Consensus       194 ~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~--------  265 (410)
T 1vyh_C          194 NVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVAT--------  265 (410)
T ss_dssp             CEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT--------
T ss_pred             CEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcCCCeEEEEECCC--------
Confidence            999999999999999999999999999999999999999999999999999999999999999999999955        


Q ss_pred             ccccceEEeecCCcCceeEEEEEEcCc------------------eeEEEEEeCCCcEEEEecCCCceeeeee-cCccee
Q 014475          162 RASHLYLHSFTGHTLRITDIVIGYGGV------------------SATIVSASEDRTCKVWSLLKGRLLRNIV-FPSVID  222 (424)
Q Consensus       162 ~~~~~~~~~~~~~~~~i~~~~~~~~~~------------------~~~l~~~~~d~~v~iwd~~~~~~~~~~~-~~~~i~  222 (424)
                         ......+.+|...|.+++|+|++.                  +.+|++|+.|+.|++||+++++++..+. |...|.
T Consensus       266 ---~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~v~  342 (410)
T 1vyh_C          266 ---KECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVR  342 (410)
T ss_dssp             ---CCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEE
T ss_pred             ---CceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEECCCCcEE
Confidence               345567889999999999998631                  3689999999999999999999888887 888999


Q ss_pred             EEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCC
Q 014475          223 AIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPI  298 (424)
Q Consensus       223 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~  298 (424)
                      +++|+|++++|++|+.||.|++||+++.         +.+..+.+|...|++++|+| +.+|++|+.||.|++|+++
T Consensus       343 ~v~~~~~g~~l~s~s~D~~i~vwd~~~~---------~~~~~~~~h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~~r  410 (410)
T 1vyh_C          343 GVLFHSGGKFILSCADDKTLRVWDYKNK---------RCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR  410 (410)
T ss_dssp             EEEECSSSSCEEEEETTTEEEEECCTTS---------CCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC--
T ss_pred             EEEEcCCCCEEEEEeCCCeEEEEECCCC---------ceEEEEcCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEeCC
Confidence            9999999999999999999999999875         55677889999999999999 9999999999999999964

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=7.4e-45  Score=336.61  Aligned_cols=310  Identities=14%  Similarity=0.182  Sum_probs=269.5

Q ss_pred             EEeecCCCCCceEEEeC----CCCc------eEEEeeCCC-------CCCCceEEecceeecCCCccccCCCCceeEEEE
Q 014475            4 LIASSSVADTGIGCWDL----ESGA------EQLRYKSCA-------SPPHGLACVGQRFLASSQLREQPSASSGSILYW   66 (424)
Q Consensus         4 ~lat~~~~dg~i~vwd~----~~~~------~~~~~~~~~-------~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vw   66 (424)
                      +||+++ .||.|++||+    .+++      ....+....       .|...|.+++  |+|++++|++++.+ |.|++|
T Consensus        60 ~l~~~~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--~s~~~~~l~~~~~d-g~i~i~  135 (425)
T 1r5m_A           60 ILAYGE-KNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLA--WSHDGNSIVTGVEN-GELRLW  135 (425)
T ss_dssp             EEEEEE-TBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEE--ECTTSSEEEEEETT-SCEEEE
T ss_pred             EEEEec-CCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEE--EcCCCCEEEEEeCC-CeEEEE
Confidence            789999 9999999999    8888      455444311       1456899999  99999999999998 999999


Q ss_pred             ECCCCceeeeecCCCCeeEEEECCCCCEEEEecCCCcEEEEEccCcceeeeeccccCC---------------eEEEEEc
Q 014475           67 SWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRA---------------VTCLVFS  131 (424)
Q Consensus        67 d~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~---------------i~~~~~~  131 (424)
                      |...........|..+|.+++|+|++++|++++.||.|++||+.+++.+..+..+...               +.++.|+
T Consensus       136 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  215 (425)
T 1r5m_A          136 NKTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWV  215 (425)
T ss_dssp             ETTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC---------------CCCBSCCEEE
T ss_pred             eCCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEc
Confidence            9555555555668999999999999999999999999999999999999888877776               9999999


Q ss_pred             cCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCce
Q 014475          132 EDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRL  211 (424)
Q Consensus       132 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~  211 (424)
                      |++ .+++++.+|.|++||+++           ......+..|...|.+++|+|++  .+|++++.|+.|++||+++++.
T Consensus       216 ~~~-~~~~~~~~g~i~~~d~~~-----------~~~~~~~~~~~~~i~~~~~~~~~--~~l~~~~~d~~i~i~d~~~~~~  281 (425)
T 1r5m_A          216 DDD-KFVIPGPKGAIFVYQITE-----------KTPTGKLIGHHGPISVLEFNDTN--KLLLSASDDGTLRIWHGGNGNS  281 (425)
T ss_dssp             ETT-EEEEECGGGCEEEEETTC-----------SSCSEEECCCSSCEEEEEEETTT--TEEEEEETTSCEEEECSSSBSC
T ss_pred             CCC-EEEEEcCCCeEEEEEcCC-----------CceeeeeccCCCceEEEEECCCC--CEEEEEcCCCEEEEEECCCCcc
Confidence            875 588899999999999965           23455677899999999999998  7999999999999999999988


Q ss_pred             eeeee-cCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCC
Q 014475          212 LRNIV-FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSED  289 (424)
Q Consensus       212 ~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~d  289 (424)
                      ...+. +...+.+++|+|++ .+++++.|+.|++||+++.         ..+..+..|...|.+++|+| +++|++++.|
T Consensus       282 ~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~---------~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d  351 (425)
T 1r5m_A          282 QNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQN---------TLLALSIVDGVPIFAGRISQDGQKYAVAFMD  351 (425)
T ss_dssp             SEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTT---------EEEEEEECTTCCEEEEEECTTSSEEEEEETT
T ss_pred             ceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCC---------cEeEecccCCccEEEEEEcCCCCEEEEEECC
Confidence            88887 88999999999999 9999999999999999886         66777888999999999999 9999999999


Q ss_pred             CcEEEEeCCCCc--------------------EEEEEeccCC--CeeEEEEEecCceeeeccCCCceeeccCCC
Q 014475          290 GMVRVWDPITHN--------------------IVRMFRLAKG--PVNNILVVRRPLYLNLGSFSNPHTSSRRHG  341 (424)
Q Consensus       290 g~i~iwd~~~~~--------------------~~~~~~~~~~--~v~~l~~s~~~~~l~~~~~d~~i~iw~~~~  341 (424)
                      |.|++||+++++                    ++..+..|..  +|++++|+|++++|++++.||.|++|++++
T Consensus       352 g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~g  425 (425)
T 1r5m_A          352 GQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYSLQEGSVVAIPG  425 (425)
T ss_dssp             SCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEEESSSCCEEEECCC
T ss_pred             CeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCCceEEEEecCceEEEEeecC
Confidence            999999999988                    8999999976  999999999999999999999999999863

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.2e-45  Score=341.16  Aligned_cols=313  Identities=13%  Similarity=0.184  Sum_probs=263.2

Q ss_pred             EEeec----------CCCCCceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCC---
Q 014475            4 LIASS----------SVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSK---   70 (424)
Q Consensus         4 ~lat~----------~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~---   70 (424)
                      +||++          + .||.|+|||+.+++..+.+.. ..+...|.+++  |+|++++|++++.+ |.|++||+..   
T Consensus        27 ~l~~g~~~g~~~~~~~-~d~~v~iw~~~~~~~~~~~~~-~~~~~~v~~~~--~s~~~~~l~~~~~d-g~v~vw~~~~~~~  101 (416)
T 2pm9_A           27 LLVSGTVSGTVDANFS-TDSSLELWSLLAADSEKPIAS-LQVDSKFNDLD--WSHNNKIIAGALDN-GSLELYSTNEANN  101 (416)
T ss_dssp             EEEEBCBSSCCCSSCC-CCCCCEEEESSSGGGCSCSCC-CCCSSCEEEEE--ECSSSSCEEEEESS-SCEEEECCSSTTS
T ss_pred             EEEEEecCcccccccC-CCCeEEEEEccCCCCCcEEEE-EecCCceEEEE--ECCCCCeEEEEccC-CeEEEeecccccc
Confidence            68888          8 899999999998864322222 23567899999  99999999999987 9999999987   


Q ss_pred             -C-ceeeeecCCCCeeEEEECCC-CCEEEEecCCCcEEEEEccCcc------eee---eeccccCCeEEEEEccC-CcEE
Q 014475           71 -P-QVEVKSLPAEPIKPIAANSH-GTYIAGGGQSGDIYMWEVASGR------LLK---KWHAHYRAVTCLVFSED-GSFL  137 (424)
Q Consensus        71 -~-~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~v~iwd~~~~~------~~~---~~~~~~~~i~~~~~~~~-~~~l  137 (424)
                       . .......|...|.+++|+|+ +++|++++.||.|++||+.+++      ...   .+..|...|.+++|+|+ +.+|
T Consensus       102 ~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l  181 (416)
T 2pm9_A          102 AINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVF  181 (416)
T ss_dssp             CCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEE
T ss_pred             cccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEE
Confidence             2 23334568899999999998 8999999999999999999886      333   33679999999999998 7899


Q ss_pred             EEeeCCCcEEEEeCCcccchhcccccccceEEeecCC------cCceeEEEEEEcCceeEEEEEeCCC---cEEEEecCC
Q 014475          138 ISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGH------TLRITDIVIGYGGVSATIVSASEDR---TCKVWSLLK  208 (424)
Q Consensus       138 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~------~~~i~~~~~~~~~~~~~l~~~~~d~---~v~iwd~~~  208 (424)
                      ++++.||.|++||++++           ..+..+..+      ...|.+++|+|++. .++++++.|+   .|++||+++
T Consensus       182 ~~~~~dg~v~iwd~~~~-----------~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~l~~~~~d~~~~~i~~~d~~~  249 (416)
T 2pm9_A          182 ASAGSSNFASIWDLKAK-----------KEVIHLSYTSPNSGIKQQLSVVEWHPKNS-TRVATATGSDNDPSILIWDLRN  249 (416)
T ss_dssp             EEESSSSCEEEEETTTT-----------EEEEEECCCCCSSCCCCCEEEEEECSSCT-TEEEEEECCSSSCCCCEEETTS
T ss_pred             EEEcCCCCEEEEECCCC-----------CcceEEeccccccccCCceEEEEECCCCC-CEEEEEECCCCCceEEEEeCCC
Confidence            99999999999999652           234444444      78999999999864 6899999998   999999998


Q ss_pred             C-ceeeeee--cCcceeEEEECC-CCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-C-CE
Q 014475          209 G-RLLRNIV--FPSVIDAIALDP-AEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-G-DL  282 (424)
Q Consensus       209 ~-~~~~~~~--~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~-~~  282 (424)
                      + ++...+.  |...+.+++|+| ++.+|++++.||.|++||+++.         +.+..+..|...|.+++|+| + .+
T Consensus       250 ~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~---------~~~~~~~~~~~~v~~~~~s~~~~~~  320 (416)
T 2pm9_A          250 ANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESA---------EQLSQFPARGNWCFKTKFAPEAPDL  320 (416)
T ss_dssp             TTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSC---------CEEEEEECSSSCCCCEEECTTCTTE
T ss_pred             CCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCC---------ccceeecCCCCceEEEEECCCCCCE
Confidence            6 5666665  788999999999 9999999999999999999886         56778889999999999999 6 89


Q ss_pred             EEEeCCCCcEEEEeCCCCcEEEEEe-----------------------------------ccCCCeeEEEEEecCceeee
Q 014475          283 LISGSEDGMVRVWDPITHNIVRMFR-----------------------------------LAKGPVNNILVVRRPLYLNL  327 (424)
Q Consensus       283 l~t~~~dg~i~iwd~~~~~~~~~~~-----------------------------------~~~~~v~~l~~s~~~~~l~~  327 (424)
                      |++++.||.|++||+.++.......                                   .|..++.+++|+|+|++|++
T Consensus       321 l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~la~  400 (416)
T 2pm9_A          321 FACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAFGGKLVQI  400 (416)
T ss_dssp             EEECCSSSEEEEEESCCCCCSSCC----------------------CCSCCCSSCCCCCSTTCCCSCCCEEETTTEEECB
T ss_pred             EEEEecCCcEEEEEccCCCCCcccccccccccCCcccccccccccccccccccccccCCccccCCccceEEeeCCeEEEE
Confidence            9999999999999998765432221                                   15678889999999999999


Q ss_pred             ccCCCceeeccCCCC
Q 014475          328 GSFSNPHTSSRRHGS  342 (424)
Q Consensus       328 ~~~d~~i~iw~~~~~  342 (424)
                      ++.|+.|++|++.+.
T Consensus       401 ~~~d~~v~~w~~~~~  415 (416)
T 2pm9_A          401 TPDGKGVSITNPKIS  415 (416)
T ss_dssp             CTTSSCBCCBCCCCC
T ss_pred             eCCCCeEEEEEeccC
Confidence            999999999998864

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=3e-44  Score=328.91  Aligned_cols=312  Identities=18%  Similarity=0.239  Sum_probs=253.7

Q ss_pred             CceEEEeCCCCceEE-EeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCceeeeec-C-----------
Q 014475           13 TGIGCWDLESGAEQL-RYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSL-P-----------   79 (424)
Q Consensus        13 g~i~vwd~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~~~-~-----------   79 (424)
                      ....+|+....+... .+.....|...|.+++  |+|+|+++++++ + +.+++|++.+++...... +           
T Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~--fspdg~~la~g~-~-~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~  115 (393)
T 1erj_A           40 DYYILYNPALPREIDVELHKSLDHTSVVCCVK--FSNDGEYLATGC-N-KTTQVYRVSDGSLVARLSDDSAANKDPENLN  115 (393)
T ss_dssp             SCEEEECTTSCCCEEEEEEEEEECSSCCCEEE--ECTTSSEEEEEC-B-SCEEEEETTTCCEEEEECC------------
T ss_pred             ceEEEECCCCCcccCceeEEecCCCCEEEEEE--ECCCCCEEEEEc-C-CcEEEEEecCCCEEEEecCcccccccccccc
Confidence            345577765443221 1111113567788988  999999999876 4 899999998877543322 1           


Q ss_pred             -------CCCeeEEEECCCCCEEEEecCCCcEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCC
Q 014475           80 -------AEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLL  152 (424)
Q Consensus        80 -------~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~  152 (424)
                             ...|.+++|+|++++|++|+.|+.|++||+++++.+..+.+|...|.+++|+|++++|++++.|+.|++||++
T Consensus       116 ~~~~~~~~~~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~  195 (393)
T 1erj_A          116 TSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLR  195 (393)
T ss_dssp             -----CCCCBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred             ccccCCCceeEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECC
Confidence                   1249999999999999999999999999999999999999999999999999999999999999999999996


Q ss_pred             cccchhcccccccceEEeecCCcCceeEEEEEE-cCceeEEEEEeCCCcEEEEecCCCceeeee--------ecCcceeE
Q 014475          153 TVFEECESQRASHLYLHSFTGHTLRITDIVIGY-GGVSATIVSASEDRTCKVWSLLKGRLLRNI--------VFPSVIDA  223 (424)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~--------~~~~~i~~  223 (424)
                      ++.           ....+. +...+.+++++| ++  .++++++.|+.|++||+++++.+..+        .|...|.+
T Consensus       196 ~~~-----------~~~~~~-~~~~v~~~~~~~~~~--~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~  261 (393)
T 1erj_A          196 TGQ-----------CSLTLS-IEDGVTTVAVSPGDG--KYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYS  261 (393)
T ss_dssp             TTE-----------EEEEEE-CSSCEEEEEECSTTC--CEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEE
T ss_pred             CCe-----------eEEEEE-cCCCcEEEEEECCCC--CEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEE
Confidence            632           223333 567899999998 66  89999999999999999998877765        26788999


Q ss_pred             EEECCCCCEEEEEeCCCcEEEEEcCCCCCCCC---CcCceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCC
Q 014475          224 IALDPAEHVFYAGSRDGSIYIAALNAESPSTS---SYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPIT  299 (424)
Q Consensus       224 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~---~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~  299 (424)
                      ++|+|++++|++|+.|+.|++||++.......   .....+...+.+|...|.+++|+| +.+|++|+.|+.|++||+++
T Consensus       262 v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~  341 (393)
T 1erj_A          262 VVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKS  341 (393)
T ss_dssp             EEECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTT
T ss_pred             EEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCC
Confidence            99999999999999999999999987532111   111234566788999999999999 99999999999999999999


Q ss_pred             CcEEEEEeccCCCeeEEEEEe------cCceeeeccCCCceeeccCCCC
Q 014475          300 HNIVRMFRLAKGPVNNILVVR------RPLYLNLGSFSNPHTSSRRHGS  342 (424)
Q Consensus       300 ~~~~~~~~~~~~~v~~l~~s~------~~~~l~~~~~d~~i~iw~~~~~  342 (424)
                      ++++..+.+|.+.|.+++|++      ++.+|++|+.||.|++|++...
T Consensus       342 ~~~~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~~  390 (393)
T 1erj_A          342 GNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKKI  390 (393)
T ss_dssp             CCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEEEC
T ss_pred             CeEEEEECCCCCCEEEEEecCCcCcCCCCCEEEEECCCCcEEECccccc
Confidence            999999999999999999986      6889999999999999998643

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=1e-43  Score=319.16  Aligned_cols=297  Identities=17%  Similarity=0.297  Sum_probs=254.5

Q ss_pred             CCCceEEEeeCCCCCCCceEEecceeecC-CCccccCCCCceeEEEEECCCCcee------eeecCCCCeeEEEECCCCC
Q 014475           21 ESGAEQLRYKSCASPPHGLACVGQRFLAS-SQLREQPSASSGSILYWSWSKPQVE------VKSLPAEPIKPIAANSHGT   93 (424)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~l~~~~~~~g~i~vwd~~~~~~~------~~~~~~~~v~~~~~s~~~~   93 (424)
                      ++.++..+|++   |...|.+++  |+|+ +++|++++.| |+|++||+...+..      ....|...|.+++|+|+++
T Consensus        26 ~~~~l~~tL~G---H~~~V~~v~--~sp~~~~~l~S~s~D-~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~   99 (340)
T 4aow_A           26 EQMTLRGTLKG---HNGWVTQIA--TTPQFPDMILSASRD-KTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQ   99 (340)
T ss_dssp             CEEEEEEEECC---CSSCEEEEE--ECTTCTTEEEEEETT-SCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSS
T ss_pred             CceEEEEEECC---ccCCEEEEE--EeCCCCCEEEEEcCC-CeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCC
Confidence            33445556665   557799999  9998 5788899887 99999999865421      2345889999999999999


Q ss_pred             EEEEecCCCcEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecC
Q 014475           94 YIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTG  173 (424)
Q Consensus        94 ~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  173 (424)
                      +|++++.|+.|++|+............+...+..+.+++++++|++++.|+.+++||+..          .........+
T Consensus       100 ~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~----------~~~~~~~~~~  169 (340)
T 4aow_A          100 FALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLG----------VCKYTVQDES  169 (340)
T ss_dssp             EEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTS----------CEEEEECSSS
T ss_pred             EEEEEcccccceEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCC----------CceEEEEecc
Confidence            999999999999999999988888888999999999999999999999999999999854          2233455678


Q ss_pred             CcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeee-cCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCC
Q 014475          174 HTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESP  252 (424)
Q Consensus       174 ~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~  252 (424)
                      |...+..++|++++....+++++.|+.|++||+++++.+..+. |...|.+++|+|++++|++|+.||.|++||++..  
T Consensus       170 ~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~--  247 (340)
T 4aow_A          170 HSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEG--  247 (340)
T ss_dssp             CSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTT--
T ss_pred             ccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccC--
Confidence            9999999999988766789999999999999999999888877 8899999999999999999999999999999986  


Q ss_pred             CCCCcCceeeeeecccCcCeEEEEecCCCEEEEeCCCCcEEEEeCCCCcEEEEEe---------ccCCCeeEEEEEecCc
Q 014475          253 STSSYGMHIIGSLSDHSKAVTCLAYSTGDLLISGSEDGMVRVWDPITHNIVRMFR---------LAKGPVNNILVVRRPL  323 (424)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~---------~~~~~v~~l~~s~~~~  323 (424)
                             ..+..+. +...|.++.|+|+..+++++.|+.|++||++++..+..+.         .|...|++++|+|+++
T Consensus       248 -------~~~~~~~-~~~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~  319 (340)
T 4aow_A          248 -------KHLYTLD-GGDIINALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQ  319 (340)
T ss_dssp             -------EEEEEEE-CSSCEEEEEECSSSSEEEEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSS
T ss_pred             -------ceeeeec-CCceEEeeecCCCCceeeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCC
Confidence                   4455554 4568999999996677778889999999999888776654         6788999999999999


Q ss_pred             eeeeccCCCceeeccCCCCC
Q 014475          324 YLNLGSFSNPHTSSRRHGSQ  343 (424)
Q Consensus       324 ~l~~~~~d~~i~iw~~~~~~  343 (424)
                      +|++|+.||.|++|++.++.
T Consensus       320 ~l~sgs~Dg~v~iW~~~tGt  339 (340)
T 4aow_A          320 TLFAGYTDNLVRVWQVTIGT  339 (340)
T ss_dssp             EEEEEETTSCEEEEEEEC--
T ss_pred             EEEEEeCCCEEEEEeCCCcC
Confidence            99999999999999998763

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=2e-44  Score=324.07  Aligned_cols=292  Identities=12%  Similarity=0.157  Sum_probs=237.9

Q ss_pred             eEEEeeCCCCCCCceEEeccee-----ec-CCCccccCCCCceeEEEEECCCCce--------eeeecCCCCeeEEEECC
Q 014475           25 EQLRYKSCASPPHGLACVGQRF-----LA-SSQLREQPSASSGSILYWSWSKPQV--------EVKSLPAEPIKPIAANS   90 (424)
Q Consensus        25 ~~~~~~~~~~~~~~v~~~~~~~-----~~-~~~~l~~~~~~~g~i~vwd~~~~~~--------~~~~~~~~~v~~~~~s~   90 (424)
                      ....+++   |...|.+++  |     ++ ++++|++++.| ++|++||+...+.        .....|...|.+++|+|
T Consensus        13 ~~~~l~g---H~~~V~~~~--~~~s~~~~~d~~~l~sgs~D-~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~   86 (343)
T 2xzm_R           13 KRGILEG---HSDWVTSIV--AGFSQKENEDSPVLISGSRD-KTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQ   86 (343)
T ss_dssp             EEEEEEC---CSSCEEEEE--ECCCSSTTCCCCEEEEEETT-SCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECS
T ss_pred             eeeeecc---chhhhhhee--eEEEeecCCCCCEEEEEcCC-CEEEEEECCcCCcccccccccchhccCCCceEEEEECC
Confidence            4455665   456788888  7     66 89999999998 9999999875431        23356889999999999


Q ss_pred             CCCEEEEecCCCcEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEe
Q 014475           91 HGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHS  170 (424)
Q Consensus        91 ~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  170 (424)
                      ++.++++|+.|++|++||+++++.+..+.+|...|.+++|+|++++|++++.|+.|++||+...         .......
T Consensus        87 ~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~---------~~~~~~~  157 (343)
T 2xzm_R           87 ENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGE---------CKFSSAE  157 (343)
T ss_dssp             STTEEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSC---------EEEECCT
T ss_pred             CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCC---------ceeeeec
Confidence            9999999999999999999999999999999999999999999999999999999999999531         1111112


Q ss_pred             ecCCcCceeEEEEEEcCc--------eeEEEEEeCCCcEEEEecCCCceeeeee-cCcceeEEEECCCCCEEEEEeCCCc
Q 014475          171 FTGHTLRITDIVIGYGGV--------SATIVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYAGSRDGS  241 (424)
Q Consensus       171 ~~~~~~~i~~~~~~~~~~--------~~~l~~~~~d~~v~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~  241 (424)
                      ...|...|.+++|+|++.        +.++++++.|+.|++||. ..+....+. |...|.+++|+|++++|++|+.||.
T Consensus       158 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~-~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~  236 (343)
T 2xzm_R          158 KENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNT-NFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKK  236 (343)
T ss_dssp             TTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEET-TTEEEEEEECCSSCEEEEEECTTSSEEEEEETTCE
T ss_pred             ccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcC-CCceeEEEcCccccceEEEECCCCCEEEEEcCCCe
Confidence            236889999999998752        158999999999999995 455555554 8899999999999999999999999


Q ss_pred             EEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCCCcEEE--EEe-----------
Q 014475          242 IYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVR--MFR-----------  307 (424)
Q Consensus       242 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~~~--~~~-----------  307 (424)
                      |++||+....        .....+ .+...|.+++|+| +.+++ ++.|+.|++||+.+++...  .+.           
T Consensus       237 v~iwd~~~~~--------~~~~~~-~~~~~v~~v~~sp~~~~la-~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~  306 (343)
T 2xzm_R          237 LLIWDILNLT--------YPQREF-DAGSTINQIAFNPKLQWVA-VGTDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQK  306 (343)
T ss_dssp             EEEEESSCCS--------SCSEEE-ECSSCEEEEEECSSSCEEE-EEESSCEEEEESSSCCSCSEEECCCCSGGGBTTBC
T ss_pred             EEEEECCCCc--------ccceee-cCCCcEEEEEECCCCCEEE-EECCCCEEEEEeCCCCCCceEEeecCcchhhhhhc
Confidence            9999995532        112222 3456799999999 66665 4568889999998876544  443           


Q ss_pred             ccCCCeeEEEEEecCceeeeccCCCceeeccCCCC
Q 014475          308 LAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGS  342 (424)
Q Consensus       308 ~~~~~v~~l~~s~~~~~l~~~~~d~~i~iw~~~~~  342 (424)
                      +|...|.+++|+|++++|++|+.||.|++|++.++
T Consensus       307 ~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~g  341 (343)
T 2xzm_R          307 GKNPQCTSLAWNALGKKLFAGFTDGVIRTFSFETS  341 (343)
T ss_dssp             CSCCCEEEEEECSSSCCEEEEETTSEEEEEEEEEE
T ss_pred             CCCCceEEEEECCCCCeEEEecCCceEEEEEEEcc
Confidence            57788999999999999999999999999998643

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=2.4e-43  Score=316.26  Aligned_cols=304  Identities=18%  Similarity=0.255  Sum_probs=262.4

Q ss_pred             EEeecCCCCCceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCceee--e--e--
Q 014475            4 LIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEV--K--S--   77 (424)
Q Consensus         4 ~lat~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~--~--~--   77 (424)
                      +++++. .++.+.+|+............   |...|.+++  |+|+++++++++ + |.|++||+.+++...  .  .  
T Consensus        23 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~---h~~~v~~~~--~~~~~~~l~~~~-d-g~i~iw~~~~~~~~~~~~~~~~~   94 (337)
T 1gxr_A           23 MQPVPF-PPDALIGPGIPRHARQINTLN---HGEVVCAVT--ISNPTRHVYTGG-K-GCVKVWDISHPGNKSPVSQLDCL   94 (337)
T ss_dssp             EEECCC-CTTSSSSTTCCSEEEEEEEEC---CSSCCCEEE--ECSSSSEEEEEC-B-SEEEEEETTSTTCCSCSEEEECS
T ss_pred             EEEeec-CCCcEeccccCCccccceecc---CCCceEEEE--EecCCcEEEEcC-C-CeEEEEECCCCCceeeeeccccc
Confidence            345555 555566665554433333333   557788888  999999999998 5 999999998764321  1  1  


Q ss_pred             cCCCCeeEEEECCCCCEEEEecCCCcEEEEEccCcc--eeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCccc
Q 014475           78 LPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGR--LLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVF  155 (424)
Q Consensus        78 ~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~--~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~  155 (424)
                      .|...|.+++|+|++++|++++.||.|++||+++++  ....+..|...|.+++|+|+++++++++.||.|++||+++  
T Consensus        95 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~--  172 (337)
T 1gxr_A           95 NRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHN--  172 (337)
T ss_dssp             CTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTT--
T ss_pred             CCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCC--
Confidence            578899999999999999999999999999999887  5667788999999999999999999999999999999955  


Q ss_pred             chhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeeecCcceeEEEECCCCCEEEE
Q 014475          156 EECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYA  235 (424)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~  235 (424)
                               ......+..|...+.+++|+|++  +.+++++.|+.|++||+++++.+..+.+...+.+++|+|+++++++
T Consensus       173 ---------~~~~~~~~~~~~~i~~~~~~~~~--~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~  241 (337)
T 1gxr_A          173 ---------QTLVRQFQGHTDGASCIDISNDG--TKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAV  241 (337)
T ss_dssp             ---------TEEEEEECCCSSCEEEEEECTTS--SEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECTTSSEEEE
T ss_pred             ---------CceeeeeecccCceEEEEECCCC--CEEEEEecCCcEEEEECCCCceEeeecCCCceEEEEECCCCCEEEE
Confidence                     34566778899999999999988  8999999999999999999999999989999999999999999999


Q ss_pred             EeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCCCcEEEEEeccCCCee
Q 014475          236 GSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVN  314 (424)
Q Consensus       236 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~v~  314 (424)
                      ++.++.|++||++...          ...+..|...|.+++|+| +++|++++.||.|++||+.+++.+... .|..+|.
T Consensus       242 ~~~~~~i~~~~~~~~~----------~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~-~~~~~v~  310 (337)
T 1gxr_A          242 GMESSNVEVLHVNKPD----------KYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS-KESSSVL  310 (337)
T ss_dssp             EETTSCEEEEETTSSC----------EEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE-ECSSCEE
T ss_pred             EcCCCcEEEEECCCCC----------eEEEcCCccceeEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEe-cCCCcEE
Confidence            9999999999998863          345678999999999999 999999999999999999999988655 4889999


Q ss_pred             EEEEEecCceeeeccCCCceeeccC
Q 014475          315 NILVVRRPLYLNLGSFSNPHTSSRR  339 (424)
Q Consensus       315 ~l~~s~~~~~l~~~~~d~~i~iw~~  339 (424)
                      +++|+|++++|++++.||.|++|++
T Consensus       311 ~~~~s~~~~~l~~~~~dg~i~iw~~  335 (337)
T 1gxr_A          311 SCDISVDDKYIVTGSGDKKATVYEV  335 (337)
T ss_dssp             EEEECTTSCEEEEEETTSCEEEEEE
T ss_pred             EEEECCCCCEEEEecCCCeEEEEEE
Confidence            9999999999999999999999986

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=1e-43  Score=319.04  Aligned_cols=263  Identities=17%  Similarity=0.298  Sum_probs=237.3

Q ss_pred             EEeecCCCCCceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCce-----eeeec
Q 014475            4 LIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQV-----EVKSL   78 (424)
Q Consensus         4 ~lat~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~-----~~~~~   78 (424)
                      +|++++ .||+|+|||+.+++.+..+..|.   ..|.+++  |+|+++++++++.| +.|++|++.+.+.     .....
T Consensus        69 ~l~s~s-~Dg~v~iWd~~~~~~~~~~~~~~---~~v~~~~--~s~~~~~l~s~~~d-~~v~iw~~~~~~~~~~~~~~~~~  141 (340)
T 1got_B           69 LLLSAS-QDGKLIIWDSYTTNKVHAIPLRS---SWVMTCA--YAPSGNYVACGGLD-NICSIYNLKTREGNVRVSRELAG  141 (340)
T ss_dssp             EEEEEE-TTTEEEEEETTTCCEEEEEECSS---SCEEEEE--ECTTSSEEEEEETT-CEEEEEETTTCSBSCEEEEEEEC
T ss_pred             EEEEEe-CCCcEEEEECCCCCcceEeecCC---ccEEEEE--ECCCCCEEEEEeCC-CeEEEEECccCCCcceeEEEecC
Confidence            689999 99999999999999998887654   5688888  99999999999998 9999999987542     12346


Q ss_pred             CCCCeeEEEECCCCCEEEEecCCCcEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchh
Q 014475           79 PAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEEC  158 (424)
Q Consensus        79 ~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~  158 (424)
                      |.+.|.++.|++++. +++++.|+.|++||+++++.+..+.+|.+.|.+++|+|+++++++|+.||.|++||+++     
T Consensus       142 h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~-----  215 (340)
T 1got_B          142 HTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVRE-----  215 (340)
T ss_dssp             CSSCEEEEEEEETTE-EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT-----
T ss_pred             CCccEEEEEECCCCc-EEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCC-----
Confidence            889999999998876 88889999999999999999999999999999999999999999999999999999955     


Q ss_pred             cccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeeecC---cceeEEEECCCCCEEEE
Q 014475          159 ESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFP---SVIDAIALDPAEHVFYA  235 (424)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~---~~i~~~~~~~~~~~l~~  235 (424)
                            ......+.+|...|++++|+|++  +.|++++.|++|++||+++++.+..+.+.   ..+.+++|+|+++++++
T Consensus       216 ------~~~~~~~~~h~~~v~~v~~~p~~--~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~  287 (340)
T 1got_B          216 ------GMCRQTFTGHESDINAICFFPNG--NAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLA  287 (340)
T ss_dssp             ------CSEEEEECCCSSCEEEEEECTTS--SEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEE
T ss_pred             ------CeeEEEEcCCcCCEEEEEEcCCC--CEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCCEEEE
Confidence                  34567788999999999999998  89999999999999999998888777644   47999999999999999


Q ss_pred             EeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEe
Q 014475          236 GSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWD  296 (424)
Q Consensus       236 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd  296 (424)
                      |+.|+.|++||+...         ..+..+.+|...|.+++|+| +.+|++|+.||.|++||
T Consensus       288 g~~d~~i~vwd~~~~---------~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd  340 (340)
T 1got_B          288 GYDDFNCNVWDALKA---------DRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             EETTSEEEEEETTTC---------CEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             ECCCCeEEEEEcccC---------cEeeEeecCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence            999999999999876         55678889999999999999 99999999999999997

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=8.9e-44  Score=319.96  Aligned_cols=289  Identities=19%  Similarity=0.279  Sum_probs=232.5

Q ss_pred             EEeecCCCCCceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCcee---eeecCC
Q 014475            4 LIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVE---VKSLPA   80 (424)
Q Consensus         4 ~lat~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~---~~~~~~   80 (424)
                      +||+|+ .||+|+|||++++..........+|...|.+++  |+|++++|++++.| ++|++|+.......   ....|.
T Consensus        30 ~las~~-~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~--~sp~g~~l~s~s~D-~~v~iw~~~~~~~~~~~~~~~h~  105 (345)
T 3fm0_A           30 LLASCG-GDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVA--WSPCGNYLASASFD-ATTCIWKKNQDDFECVTTLEGHE  105 (345)
T ss_dssp             CEEEEE-TTSCEEEEEEETTEEEEEEEECSSCSSCEEEEE--ECTTSSEEEEEETT-SCEEEEEECCC-EEEEEEECCCS
T ss_pred             EEEEEc-CCCeEEEEEcCCCcceeeeeeccccCCcEEEEE--ECCCCCEEEEEECC-CcEEEEEccCCCeEEEEEccCCC
Confidence            689999 999999999998875543333345778899999  99999999999998 99999998876532   335688


Q ss_pred             CCeeEEEECCCCCEEEEecCCCcEEEEEccCcc---eeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccch
Q 014475           81 EPIKPIAANSHGTYIAGGGQSGDIYMWEVASGR---LLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEE  157 (424)
Q Consensus        81 ~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~---~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~  157 (424)
                      .+|.+++|+|++++|++|+.|+.|++||+.++.   .+..+.+|...|.+++|+|++++|++++.|+.|++||.++    
T Consensus       106 ~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~----  181 (345)
T 3fm0_A          106 NEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEE----  181 (345)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEET----
T ss_pred             CCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecC----
Confidence            999999999999999999999999999998763   4567788999999999999999999999999999999854    


Q ss_pred             hcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCC---------------ceeeeee--cCcc
Q 014475          158 CESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKG---------------RLLRNIV--FPSV  220 (424)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~---------------~~~~~~~--~~~~  220 (424)
                           ........+.+|...|.+++|+|++  ++|++++.|++|++||....               +++..+.  |...
T Consensus       182 -----~~~~~~~~~~~h~~~v~~l~~sp~g--~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  254 (345)
T 3fm0_A          182 -----DDWVCCATLEGHESTVWSLAFDPSG--QRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRT  254 (345)
T ss_dssp             -----TEEEEEEEECCCSSCEEEEEECTTS--SEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSC
T ss_pred             -----CCEEEEEEecCCCCceEEEEECCCC--CEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCc
Confidence                 2233456788999999999999998  89999999999999997432               1222232  6778


Q ss_pred             eeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-C-CEEEEeCCCCcEEEEeCC
Q 014475          221 IDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-G-DLLISGSEDGMVRVWDPI  298 (424)
Q Consensus       221 i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~-~~l~t~~~dg~i~iwd~~  298 (424)
                      |.+++|+|++..+++++.|+.|++|+.+..................+|...|++++|+| + .+|++|+.||.|++|++.
T Consensus       255 v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~  334 (345)
T 3fm0_A          255 IYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQ  334 (345)
T ss_dssp             EEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSSTTEEEEEETTSCEEEEEEC
T ss_pred             EEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCCceEEEEcCCCCcEEEEEec
Confidence            99999999999999999999999999976542221111112233468999999999999 5 599999999999999999


Q ss_pred             CCcEEEEEe
Q 014475          299 THNIVRMFR  307 (424)
Q Consensus       299 ~~~~~~~~~  307 (424)
                      +++......
T Consensus       335 ~~~~~~~~~  343 (345)
T 3fm0_A          335 RPEGLHHHH  343 (345)
T ss_dssp             C--------
T ss_pred             CCCCccccc
Confidence            887665543

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=4.4e-44  Score=331.22  Aligned_cols=309  Identities=14%  Similarity=0.123  Sum_probs=259.3

Q ss_pred             EEeecCCCCCceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCceeee-ecCCCC
Q 014475            4 LIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVK-SLPAEP   82 (424)
Q Consensus         4 ~lat~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~-~~~~~~   82 (424)
                      +|++++ .||.|++||+.+++....+..+    ..+....  |+++++++++++.+ |.|++||+.+++.... ..|...
T Consensus        70 ~l~~~~-~d~~v~i~d~~~~~~~~~~~~~----~~~~~~~--~~~~~~~l~~~~~d-g~i~iwd~~~~~~~~~~~~h~~~  141 (420)
T 3vl1_A           70 HLYKAR-LDGHDFLFNTIIRDGSKMLKRA----DYTAVDT--AKLQMRRFILGTTE-GDIKVLDSNFNLQREIDQAHVSE  141 (420)
T ss_dssp             TEEEEE-ETTEEEEEECCSEETTTTSCSC----CEEEEEE--ECSSSCEEEEEETT-SCEEEECTTSCEEEEETTSSSSC
T ss_pred             eEEEEE-cCCcEEEEEecccceeeEEecC----CceEEEE--EecCCCEEEEEECC-CCEEEEeCCCcceeeecccccCc
Confidence            478899 9999999999988776555433    3344445  88999999999987 9999999998876655 478999


Q ss_pred             eeEEEECCCCCEEEEecCCCcEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccc
Q 014475           83 IKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQR  162 (424)
Q Consensus        83 v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~  162 (424)
                      |.+++|+|++++|++|+.||.|++||+++++.+..+.+|...|.+++|+|++++|++++.||.|++||++++.       
T Consensus       142 v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~-------  214 (420)
T 3vl1_A          142 ITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGT-------  214 (420)
T ss_dssp             EEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTE-------
T ss_pred             cEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCc-------
Confidence            9999999999999999999999999999999999999999999999999999999999999999999997643       


Q ss_pred             cccceEEeec---CCc---------------------CceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeee--
Q 014475          163 ASHLYLHSFT---GHT---------------------LRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV--  216 (424)
Q Consensus       163 ~~~~~~~~~~---~~~---------------------~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~--  216 (424)
                          .+..+.   .|.                     ..+.+++|+|++  .++++++.||.|++||+++++....+.  
T Consensus       215 ----~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~--~~l~~~~~dg~i~i~d~~~~~~~~~~~~~  288 (420)
T 3vl1_A          215 ----TIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYG--KYVIAGHVSGVITVHNVFSKEQTIQLPSK  288 (420)
T ss_dssp             ----EEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTT--EEEEEEETTSCEEEEETTTCCEEEEECCT
T ss_pred             ----eeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCC--CEEEEEcCCCeEEEEECCCCceeEEcccc
Confidence                222232   233                     445555556666  899999999999999999998877775  


Q ss_pred             cCcceeEEEECCCCC-EEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecc-cCcCeEEEEecCCCEEEEeCCCCcEEE
Q 014475          217 FPSVIDAIALDPAEH-VFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSD-HSKAVTCLAYSTGDLLISGSEDGMVRV  294 (424)
Q Consensus       217 ~~~~i~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~l~t~~~dg~i~i  294 (424)
                      +...+.+++|+|++. ++++|+.||.|++||+++..        .++..+.. |...|.++.+.++++|++++.||.|++
T Consensus       289 ~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~--------~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~d~~v~i  360 (420)
T 3vl1_A          289 FTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPE--------CPVGEFLINEGTPINNVYFAAGALFVSSGFDTSIKL  360 (420)
T ss_dssp             TSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTT--------SCSEEEEESTTSCEEEEEEETTEEEEEETTTEEEEE
T ss_pred             cCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCc--------CchhhhhccCCCCceEEEeCCCCEEEEecCCccEEE
Confidence            678899999999998 99999999999999999864        33455555 677899997766889999999999999


Q ss_pred             EeCCCC---------cEEEEEeccCCCeeEEEEEecCc---eeeeccCCCceeeccCCC
Q 014475          295 WDPITH---------NIVRMFRLAKGPVNNILVVRRPL---YLNLGSFSNPHTSSRRHG  341 (424)
Q Consensus       295 wd~~~~---------~~~~~~~~~~~~v~~l~~s~~~~---~l~~~~~d~~i~iw~~~~  341 (424)
                      ||+...         .....+..|.+.|.+++|+|+++   .|++++.+|.+.+|++..
T Consensus       361 w~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g~~~~~~~~~  419 (420)
T 3vl1_A          361 DIISDPESERPAIEFETPTFLVSNDDAVSQFCYVSDDESNGEVLEVGKNNFCALYNLSN  419 (420)
T ss_dssp             EEECCTTCCSCEECTTSCEEECCSSCCCCEEEEECCSSSSCEEEEEETTTEEEEEESCC
T ss_pred             EeccCCCCCccceeccCccEEccCCcceEEEEEccCCCCcceEEEEcCCceEEEEeccC
Confidence            998873         22334567889999999999999   788888899999999863

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=1.9e-43  Score=312.20  Aligned_cols=251  Identities=17%  Similarity=0.227  Sum_probs=224.8

Q ss_pred             eeecCCCCeeEEEECCCCCEEEEecCCCcEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcc
Q 014475           75 VKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTV  154 (424)
Q Consensus        75 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~  154 (424)
                      ....|.+.|.+++|+|++++|++|+.||.|++||++++..+..+..|..+|.+++|+|++++|++|+.|+.|++||+++ 
T Consensus         8 ~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~-   86 (304)
T 2ynn_A            8 TFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNT-   86 (304)
T ss_dssp             EEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTT-
T ss_pred             eecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCC-
Confidence            3456889999999999999999999999999999999999999999999999999999999999999999999999965 


Q ss_pred             cchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCce-eeeee-cCcceeEEEECC-CCC
Q 014475          155 FEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRL-LRNIV-FPSVIDAIALDP-AEH  231 (424)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~-~~~~~-~~~~i~~~~~~~-~~~  231 (424)
                                ...+..+.+|...|.+++|+|++  .+|++++.|++|++||++++.. ...+. |...|.+++|+| ++.
T Consensus        87 ----------~~~~~~~~~h~~~v~~~~~~~~~--~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~  154 (304)
T 2ynn_A           87 ----------GEKVVDFEAHPDYIRSIAVHPTK--PYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPS  154 (304)
T ss_dssp             ----------CCEEEEEECCSSCEEEEEECSSS--SEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTT
T ss_pred             ----------CcEEEEEeCCCCcEEEEEEcCCC--CEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCC
Confidence                      34567788999999999999998  8999999999999999988744 34444 888999999999 678


Q ss_pred             EEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC---CCEEEEeCCCCcEEEEeCCCCcEEEEEec
Q 014475          232 VFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST---GDLLISGSEDGMVRVWDPITHNIVRMFRL  308 (424)
Q Consensus       232 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~~l~t~~~dg~i~iwd~~~~~~~~~~~~  308 (424)
                      .|++|+.|+.|++||++...        .......+|...+..+.|+|   +.+|++|+.|+.|++||+++++++.++.+
T Consensus       155 ~l~sgs~D~~v~iwd~~~~~--------~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~  226 (304)
T 2ynn_A          155 TFASGCLDRTVKVWSLGQST--------PNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEG  226 (304)
T ss_dssp             EEEEEETTSEEEEEETTCSS--------CSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEEC
T ss_pred             EEEEEeCCCeEEEEECCCCC--------ccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCC
Confidence            99999999999999998764        22233345778899999987   57999999999999999999999999999


Q ss_pred             cCCCeeEEEEEecCceeeeccCCCceeeccCCCCCCCC
Q 014475          309 AKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGSQLPP  346 (424)
Q Consensus       309 ~~~~v~~l~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~  346 (424)
                      |...|.+++|+|++++|++|+.||.|++||..+.++..
T Consensus       227 h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~  264 (304)
T 2ynn_A          227 HMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEK  264 (304)
T ss_dssp             CSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEE
T ss_pred             CCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCCceee
Confidence            99999999999999999999999999999998776543

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=4.1e-42  Score=310.02  Aligned_cols=264  Identities=20%  Similarity=0.302  Sum_probs=235.7

Q ss_pred             EEeecCCCCCceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCc-------eeee
Q 014475            4 LIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQ-------VEVK   76 (424)
Q Consensus         4 ~lat~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~-------~~~~   76 (424)
                      +||||+ .||+|+|||..+++....+..+.   ..|.+++  |+|++..+++++.| +.+++|++....       ....
T Consensus        78 ~l~s~s-~Dg~v~vWd~~~~~~~~~~~~~~---~~v~~~~--~sp~g~~lasg~~d-~~i~v~~~~~~~~~~~~~~~~~~  150 (354)
T 2pbi_B           78 RIVSSS-QDGKVIVWDSFTTNKEHAVTMPC---TWVMACA--YAPSGCAIACGGLD-NKCSVYPLTFDKNENMAAKKKSV  150 (354)
T ss_dssp             EEEEEE-TTSEEEEEETTTCCEEEEEECSS---SCCCEEE--ECTTSSEEEEESTT-SEEEEEECCCCTTCCSGGGCEEE
T ss_pred             EEEEEe-CCCeEEEEECCCCCcceEEecCC---CCEEEEE--ECCCCCEEEEeeCC-CCEEEEEEeccccccccccceee
Confidence            689999 99999999999999888887654   4577777  99999999999998 999999986432       2233


Q ss_pred             ecCCCCeeEEEECCCCCEEEEecCCCcEEEEEccCcceeeeeccccCCeEEEEEcc--CCcEEEEeeCCCcEEEEeCCcc
Q 014475           77 SLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSE--DGSFLISGSEDGCVRIWSLLTV  154 (424)
Q Consensus        77 ~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~--~~~~l~s~~~dg~i~iwd~~~~  154 (424)
                      ..|...|.+++|+|++..|++++.|++|++||+++++.+..+.+|...|.++.|+|  ++++|++|+.||.|++||+++ 
T Consensus       151 ~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~-  229 (354)
T 2pbi_B          151 AMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRS-  229 (354)
T ss_dssp             EECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTT-
T ss_pred             eccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCC-
Confidence            46899999999999999999999999999999999999999999999999999987  568999999999999999965 


Q ss_pred             cchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeeec---CcceeEEEECCCCC
Q 014475          155 FEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVF---PSVIDAIALDPAEH  231 (424)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~---~~~i~~~~~~~~~~  231 (424)
                                ...+..+.+|...|++++|+|++  ..|++++.|++|++||+++++.+..+..   ...+.+++|+|++.
T Consensus       230 ----------~~~~~~~~~h~~~v~~v~~~p~~--~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~  297 (354)
T 2pbi_B          230 ----------GQCVQAFETHESDVNSVRYYPSG--DAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGR  297 (354)
T ss_dssp             ----------CCEEEEECCCSSCEEEEEECTTS--SEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSS
T ss_pred             ----------CcEEEEecCCCCCeEEEEEeCCC--CEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCC
Confidence                      34567788999999999999998  8999999999999999998887766653   34688999999999


Q ss_pred             EEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEe
Q 014475          232 VFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWD  296 (424)
Q Consensus       232 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd  296 (424)
                      ++++|+.|+.|++||+.++         ..+..+.+|...|++++|+| +.+|++|+.||.|++|+
T Consensus       298 ~l~~g~~d~~i~vwd~~~~---------~~~~~l~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~  354 (354)
T 2pbi_B          298 LLFAGYNDYTINVWDVLKG---------SRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA  354 (354)
T ss_dssp             EEEEEETTSCEEEEETTTC---------SEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred             EEEEEECCCcEEEEECCCC---------ceEEEEECCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence            9999999999999999876         45677889999999999999 99999999999999996

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.5e-42  Score=312.53  Aligned_cols=294  Identities=15%  Similarity=0.204  Sum_probs=258.6

Q ss_pred             CCCCceEEecceeecCCCccccCCCCceeEEEEECCCCceeee-ecCCCCeeEEEECCCCCEEEEecCCCcEEEEEccCc
Q 014475           34 SPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVK-SLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASG  112 (424)
Q Consensus        34 ~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~  112 (424)
                      +|...|.+++  |+|+++++++++.+ |.|++||+.+++.... ..|...|.+++|+|++++|++++.||.|++||+.++
T Consensus        30 ~h~~~v~~~~--~s~~~~~l~~~~~d-g~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~  106 (369)
T 3zwl_B           30 GHERPLTQVK--YNKEGDLLFSCSKD-SSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNG  106 (369)
T ss_dssp             CCSSCEEEEE--ECTTSCEEEEEESS-SCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTC
T ss_pred             EeeceEEEEE--EcCCCCEEEEEeCC-CEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Confidence            3557799999  99999999999987 9999999988876644 458999999999999999999999999999999999


Q ss_pred             ceeeeeccccCCeEEEEEccCCcEEEEeeCC-----CcEEEEeCCcccchhcccccccceEEeecCCcC--ceeEEEEEE
Q 014475          113 RLLKKWHAHYRAVTCLVFSEDGSFLISGSED-----GCVRIWSLLTVFEECESQRASHLYLHSFTGHTL--RITDIVIGY  185 (424)
Q Consensus       113 ~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~i~~~~~~~  185 (424)
                      +.+..+. +...|.+++|+|+++++++++.+     |.|++||+...................+..|..  .+.+++|++
T Consensus       107 ~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (369)
T 3zwl_B          107 QCVATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWST  185 (369)
T ss_dssp             CEEEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECG
T ss_pred             cEEEEee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcC
Confidence            9988887 88999999999999999999999     999999997754433332233334455566666  999999999


Q ss_pred             cCceeEEEEEeCCCcEEEEecCC-Cceeeeee-cCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeee
Q 014475          186 GGVSATIVSASEDRTCKVWSLLK-GRLLRNIV-FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIG  263 (424)
Q Consensus       186 ~~~~~~l~~~~~d~~v~iwd~~~-~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~  263 (424)
                      ++  +.+++++.||.|++||+++ ++....+. +...+.+++|+|++.+|++++.|+.|++||+++.         ..+.
T Consensus       186 ~~--~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~---------~~~~  254 (369)
T 3zwl_B          186 KG--KYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTL---------QVLK  254 (369)
T ss_dssp             GG--CEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTC---------CEEE
T ss_pred             CC--CEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCC---------ceee
Confidence            88  8999999999999999998 67777776 7889999999999999999999999999999886         3344


Q ss_pred             eecccCcCeEEEEecC-CCEEEEeCCCC--------------cEEEEeCCCCcEEEEEeccCCCeeEEEEEecCceeeec
Q 014475          264 SLSDHSKAVTCLAYST-GDLLISGSEDG--------------MVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLG  328 (424)
Q Consensus       264 ~~~~~~~~i~~~~~~~-~~~l~t~~~dg--------------~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~  328 (424)
                      .+. +...+.+++|+| +.++++++.++              .+++||..+++.+..+.+|.+.|++++|+|++++|+++
T Consensus       255 ~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~  333 (369)
T 3zwl_B          255 KYE-TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISPQGTSYASG  333 (369)
T ss_dssp             EEE-CSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEE
T ss_pred             eec-CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecccCcEEEEEECCCCCEEEEE
Confidence            444 788999999999 99999999888              89999999999999999999999999999999999999


Q ss_pred             cCCCceeeccCCCCC
Q 014475          329 SFSNPHTSSRRHGSQ  343 (424)
Q Consensus       329 ~~d~~i~iw~~~~~~  343 (424)
                      +.||.|++|++....
T Consensus       334 ~~dg~v~iw~~~~~~  348 (369)
T 3zwl_B          334 GEDGFIRLHHFEKSY  348 (369)
T ss_dssp             ETTSEEEEEEECHHH
T ss_pred             cCCCeEEEEECcccc
Confidence            999999999998654

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=1.6e-42  Score=310.52  Aligned_cols=242  Identities=18%  Similarity=0.185  Sum_probs=202.0

Q ss_pred             CCceEEecceeecCCCccccCCCCceeEEEEECCCCceee-----eecCCCCeeEEEECCCCCEEEEecCCCcEEEEEcc
Q 014475           36 PHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEV-----KSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVA  110 (424)
Q Consensus        36 ~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~-----~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~  110 (424)
                      ..+|.+++  |+|++ .+++++.| |+|++||+++++...     ...|.+.|++++|+|++++|++|+.||+|++||++
T Consensus        82 ~~~v~~~~--~s~d~-~l~~~s~d-g~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~  157 (344)
T 4gqb_B           82 EAGVADLT--WVGER-GILVASDS-GAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLA  157 (344)
T ss_dssp             SSCEEEEE--EETTT-EEEEEETT-SEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred             CCCEEEEE--EeCCC-eEEEEECC-CEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECC
Confidence            35688888  99986 46677776 999999998876432     23689999999999999999999999999999999


Q ss_pred             CcceeeeeccccCCeEEEEEccCC-cEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCce
Q 014475          111 SGRLLKKWHAHYRAVTCLVFSEDG-SFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVS  189 (424)
Q Consensus       111 ~~~~~~~~~~~~~~i~~~~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  189 (424)
                      +++.+..+.+|...|.+++|+|++ .+|++++.||.|++||++++.         .........|...+.+++|+|++. 
T Consensus       158 ~~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~---------~~~~~~~~~~~~~~~~~~~~p~~~-  227 (344)
T 4gqb_B          158 QQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPK---------PASQIGCSAPGYLPTSLAWHPQQS-  227 (344)
T ss_dssp             TTEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSS---------CEEECC----CCCEEEEEECSSCT-
T ss_pred             CCcEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccc---------eeeeeecceeeccceeeeecCCCC-
Confidence            999999999999999999999987 478999999999999997632         111122244666789999998653 


Q ss_pred             eEEEEEeCCCcEEEEecCCCceeeeee-cCcceeEEEECCCC-CEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecc
Q 014475          190 ATIVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAE-HVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSD  267 (424)
Q Consensus       190 ~~l~~~~~d~~v~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~  267 (424)
                      .++++|+.||.|++||+++++++..+. |...|++++|+|++ ++|++|+.|+.|++||++.+.          +..+.+
T Consensus       228 ~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~----------~~~~~~  297 (344)
T 4gqb_B          228 EVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSE----------LFRSQA  297 (344)
T ss_dssp             TEEEEEETTSEEEEEESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCE----------EEEECC
T ss_pred             cceEEeccCCcEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCc----------EEEEcC
Confidence            789999999999999999999998887 88999999999987 578999999999999998752          445789


Q ss_pred             cCcCeEEEEecC-C-CEEEEeCCCCcEEEEeCCCCc
Q 014475          268 HSKAVTCLAYST-G-DLLISGSEDGMVRVWDPITHN  301 (424)
Q Consensus       268 ~~~~i~~~~~~~-~-~~l~t~~~dg~i~iwd~~~~~  301 (424)
                      |...|++++|+| + .+|++++.|++|++|++.+..
T Consensus       298 H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~~~  333 (344)
T 4gqb_B          298 HRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPTEP  333 (344)
T ss_dssp             CSSCEEEEEECSSSTTEEEEEETTSCEEEEECCC--
T ss_pred             CCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCCCC
Confidence            999999999999 5 467899999999999998754

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=2.3e-42  Score=314.93  Aligned_cols=270  Identities=20%  Similarity=0.341  Sum_probs=233.8

Q ss_pred             EEeecCCCCCceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCc--------eee
Q 014475            4 LIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQ--------VEV   75 (424)
Q Consensus         4 ~lat~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~--------~~~   75 (424)
                      +||||+ .||+|+|||+.+++....++.|..   .|.+++  |+|+++++++++.| +.+++|++....        ...
T Consensus        80 ~l~s~s-~D~~v~iWd~~~~~~~~~~~~h~~---~v~~~~--~s~~g~~las~~~d-~~v~iw~~~~~~~~~~~~~~~~~  152 (380)
T 3iz6_a           80 WIVSAS-QDGRLIVWNALTSQKTHAIKLHCP---WVMECA--FAPNGQSVACGGLD-SACSIFNLSSQADRDGNMPVSRV  152 (380)
T ss_dssp             CEEEEE-TTSEEEEEETTTTEEEEEEECCCT---TCCCCE--ECTTSSEEEECCSS-SCCEEEECCCCSSCCCSSTTCCB
T ss_pred             EEEEEe-CCCeEEEEECCCCccceEEecCCC---CEEEEE--ECCCCCEEEEeeCC-CcEEEEECCCCccccCCccceee
Confidence            689999 999999999999999999887654   566667  99999999999998 999999987532        123


Q ss_pred             eecCCCCeeEEEECCC-CCEEEEecCCCcEEEEEccCcceeeee-----ccccCCeEEEEEcc-CCcEEEEeeCCCcEEE
Q 014475           76 KSLPAEPIKPIAANSH-GTYIAGGGQSGDIYMWEVASGRLLKKW-----HAHYRAVTCLVFSE-DGSFLISGSEDGCVRI  148 (424)
Q Consensus        76 ~~~~~~~v~~~~~s~~-~~~l~~~~~dg~v~iwd~~~~~~~~~~-----~~~~~~i~~~~~~~-~~~~l~s~~~dg~i~i  148 (424)
                      ...|.+.|.++.|+|+ +..|++|+.|++|++||+++++.+..+     .+|...|.++.|++ ++++|++|+.||.|++
T Consensus       153 ~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~  232 (380)
T 3iz6_a          153 LTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRL  232 (380)
T ss_dssp             CCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEE
T ss_pred             ccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEE
Confidence            4568889999999996 567999999999999999999888776     67999999999987 8899999999999999


Q ss_pred             EeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeeecC--------cc
Q 014475          149 WSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFP--------SV  220 (424)
Q Consensus       149 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~--------~~  220 (424)
                      ||++.          ....+..+.+|...|.+++|+|++  .+|++++.|++|++||+++++.+..+...        ..
T Consensus       233 wd~~~----------~~~~~~~~~~h~~~v~~v~~~p~~--~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~  300 (380)
T 3iz6_a          233 WDLRI----------TSRAVRTYHGHEGDINSVKFFPDG--QRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPI  300 (380)
T ss_dssp             EETTT----------TCCCCEEECCCSSCCCEEEECTTS--SEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCS
T ss_pred             EECCC----------CCcceEEECCcCCCeEEEEEecCC--CeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCc
Confidence            99964          223456788999999999999998  89999999999999999999888776521        24


Q ss_pred             eeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeee----cccCcCeEEEEecC-CCEEEEeCCCCcEEEE
Q 014475          221 IDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSL----SDHSKAVTCLAYST-GDLLISGSEDGMVRVW  295 (424)
Q Consensus       221 i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~----~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iw  295 (424)
                      +.+++|+|+++++++|+.||.|++||+....         ....+    .+|...|++++|+| +.+|++|+.||.|++|
T Consensus       301 v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~---------~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW  371 (380)
T 3iz6_a          301 VTSVAFSISGRLLFAGYSNGDCYVWDTLLAE---------MVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIW  371 (380)
T ss_dssp             CSEEEECSSSSEEEEECTTSCEEEEETTTCC---------EEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEE
T ss_pred             eEEEEECCCCCEEEEEECCCCEEEEECCCCc---------eEEEEecccCCCCCceEEEEECCCCCEEEEeeCCCCEEEE
Confidence            8999999999999999999999999998763         23333    67999999999999 9999999999999999


Q ss_pred             eCCCCc
Q 014475          296 DPITHN  301 (424)
Q Consensus       296 d~~~~~  301 (424)
                      ++...+
T Consensus       372 ~~~~~~  377 (380)
T 3iz6_a          372 AFSGHR  377 (380)
T ss_dssp             ECCSSS
T ss_pred             ecCCCc
Confidence            988654

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=5.3e-41  Score=312.87  Aligned_cols=300  Identities=22%  Similarity=0.398  Sum_probs=263.5

Q ss_pred             EEEeecCCCCCceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCceeee-ecCCC
Q 014475            3 LLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVK-SLPAE   81 (424)
Q Consensus         3 ~~lat~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~-~~~~~   81 (424)
                      .+|++|+ .||+|++||+.+++.+..+.+|   ...|.+++  |+  ++.+++++.| |.|++||+.+++.... ..|..
T Consensus       130 ~~l~sg~-~dg~i~vwd~~~~~~~~~~~~h---~~~v~~~~--~~--~~~l~s~~~d-g~i~vwd~~~~~~~~~~~~h~~  200 (445)
T 2ovr_B          130 NRIVSGS-DDNTLKVWSAVTGKCLRTLVGH---TGGVWSSQ--MR--DNIIISGSTD-RTLKVWNAETGECIHTLYGHTS  200 (445)
T ss_dssp             TEEEEEE-TTSCEEEEETTTCCEEEECCCC---SSCEEEEE--EE--TTEEEEEETT-SCEEEEETTTTEEEEEECCCSS
T ss_pred             CEEEEEE-CCCcEEEEECCCCcEEEEEcCC---CCCEEEEE--ec--CCEEEEEeCC-CeEEEEECCcCcEEEEECCCCC
Confidence            3689999 9999999999999999888754   46788887  76  6788888887 9999999998876544 45889


Q ss_pred             CeeEEEECCCCCEEEEecCCCcEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhccc
Q 014475           82 PIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQ  161 (424)
Q Consensus        82 ~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~  161 (424)
                      .|.+++|+  ++.+++|+.||.|++||+.+++.+..+.+|...|.++.|  +++++++++.||.|++||+++        
T Consensus       201 ~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~--------  268 (445)
T 2ovr_B          201 TVRCMHLH--EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPET--------  268 (445)
T ss_dssp             CEEEEEEE--TTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE--CSSCEEEEETTSCEEEEEGGG--------
T ss_pred             cEEEEEec--CCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE--CCCEEEEEcCCCEEEEEECCC--------
Confidence            99999995  578999999999999999999999999999999999999  688999999999999999954        


Q ss_pred             ccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeee-cCcceeEEEECCCCCEEEEEeCCC
Q 014475          162 RASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYAGSRDG  240 (424)
Q Consensus       162 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg  240 (424)
                         ...+..+.+|...|.++.+  ++  ..+++++.|+.|++||+++++.+..+. +...+.++.+  +++++++++.||
T Consensus       269 ---~~~~~~~~~~~~~v~~~~~--~~--~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg  339 (445)
T 2ovr_B          269 ---ETCLHTLQGHTNRVYSLQF--DG--IHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMEL--KDNILVSGNADS  339 (445)
T ss_dssp             ---TEEEEEECCCSSCEEEEEE--CS--SEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEE--ETTEEEEEETTS
T ss_pred             ---CcEeEEecCCCCceEEEEE--CC--CEEEEEeCCCeEEEEECCCCCEEEEEcCCcccEEEEEE--eCCEEEEEeCCC
Confidence               4456778899999999998  55  799999999999999999999888876 6777877776  577999999999


Q ss_pred             cEEEEEcCCCCCCCCCcCceeeeeecc---cCcCeEEEEecCCCEEEEeCCCCcEEEEeCCCCcEEEEE-----eccCCC
Q 014475          241 SIYIAALNAESPSTSSYGMHIIGSLSD---HSKAVTCLAYSTGDLLISGSEDGMVRVWDPITHNIVRMF-----RLAKGP  312 (424)
Q Consensus       241 ~i~i~d~~~~~~~~~~~~~~~~~~~~~---~~~~i~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~-----~~~~~~  312 (424)
                      .|++||++++         +.+..+..   |...|++++|+ +++|++|+.||.|++||+.+++.+..+     ..|.+.
T Consensus       340 ~i~vwd~~~~---------~~~~~~~~~~~~~~~v~~~~~~-~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~  409 (445)
T 2ovr_B          340 TVKIWDIKTG---------QCLQTLQGPNKHQSAVTCLQFN-KNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGV  409 (445)
T ss_dssp             CEEEEETTTC---------CEEEEECSTTSCSSCEEEEEEC-SSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCE
T ss_pred             eEEEEECCCC---------cEEEEEccCCCCCCCEEEEEEC-CCEEEEEeCCCeEEEEECCCCceeeeeeccccCCCCce
Confidence            9999999886         44555554   88999999997 689999999999999999999999988     468889


Q ss_pred             eeEEEEEecCceeeeccCCCc----eeeccCCCC
Q 014475          313 VNNILVVRRPLYLNLGSFSNP----HTSSRRHGS  342 (424)
Q Consensus       313 v~~l~~s~~~~~l~~~~~d~~----i~iw~~~~~  342 (424)
                      |++++|+|++.+|++|+.||.    +.+||....
T Consensus       410 v~~~~~s~~~~~la~~~~dg~~~~~l~v~df~~~  443 (445)
T 2ovr_B          410 VWRIRASNTKLVCAVGSRNGTEETKLLVLDFDVD  443 (445)
T ss_dssp             EEEEEECSSEEEEEEECSSSSSCCEEEEEECCCC
T ss_pred             EEEEEecCCEEEEEEcccCCCCccEEEEEECCCC
Confidence            999999999999999999998    999998754

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=9.1e-42  Score=304.94  Aligned_cols=274  Identities=16%  Similarity=0.254  Sum_probs=217.7

Q ss_pred             EEeecCCCCCceEEEeCCCCc--eEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCc-------e-
Q 014475            4 LIASSSVADTGIGCWDLESGA--EQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQ-------V-   73 (424)
Q Consensus         4 ~lat~~~~dg~i~vwd~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~-------~-   73 (424)
                      +||+++ .||+|+|||+.++.  ....+. ...|...|.+++  |+|++++|++++.| ++|++||.....       . 
T Consensus        26 ~las~~-~D~~i~lw~~~~~~~~~~~~~~-~~~h~~~v~~v~--~sp~~~~las~s~D-~~v~iw~~~~~~~~~~~~~~~  100 (330)
T 2hes_X           26 ILATGS-TDRKIKLVSVKYDDFTLIDVLD-ETAHKKAIRSVA--WRPHTSLLAAGSFD-STVSIWAKEESADRTFEMDLL  100 (330)
T ss_dssp             EEEEEE-SSSCEEEEECSSSCCEEEEEEC-TTCCCSCEEEEE--ECTTSSEEEEEETT-SCEEEEEC-------CCCEEE
T ss_pred             EEEEEc-CCCEEEEEEecCCCeEEEEEEe-cCCccCCEEEEE--ECCCCCEEEEEeCC-CcEEEEEcccCcCccccceeE
Confidence            689999 99999999998763  344442 223667899999  99999999999998 999999985321       1 


Q ss_pred             eeeecCCCCeeEEEECCCCCEEEEecCCCcEEEEEccCc----ceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEE
Q 014475           74 EVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASG----RLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIW  149 (424)
Q Consensus        74 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~----~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iw  149 (424)
                      .....|..+|.+++|+|++++|++|+.|++|++||++..    +++..+.+|...|.+++|+|++++|++++.|+.|++|
T Consensus       101 ~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW  180 (330)
T 2hes_X          101 AIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIW  180 (330)
T ss_dssp             EEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEE
T ss_pred             EEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEE
Confidence            233468899999999999999999999999999999432    4567788999999999999999999999999999999


Q ss_pred             eCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCC--------ceeeeee--cCc
Q 014475          150 SLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKG--------RLLRNIV--FPS  219 (424)
Q Consensus       150 d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~--------~~~~~~~--~~~  219 (424)
                      |..+         ....++..+.+|...|.+++|+|++.+..|++++.|++|++||++.+        .....+.  |..
T Consensus       181 ~~~~---------~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~  251 (330)
T 2hes_X          181 KDYD---------DDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKR  251 (330)
T ss_dssp             EEET---------TEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSS
T ss_pred             ECCC---------CCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeeccccccc
Confidence            9854         22345678899999999999999854478999999999999999764        2333333  678


Q ss_pred             ceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceee-eeecccCc-CeEEEEecC---CCEEEEeCCCCcEEE
Q 014475          220 VIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHII-GSLSDHSK-AVTCLAYST---GDLLISGSEDGMVRV  294 (424)
Q Consensus       220 ~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-~~~~~~~~-~i~~~~~~~---~~~l~t~~~dg~i~i  294 (424)
                      .|.+++|++++ +|++++.||.|++|+...+.       +... ....+|.. .|.+++|+|   +.+|++|+.||.|++
T Consensus       252 ~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~-------~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~  323 (330)
T 2hes_X          252 QVYNVAWGFNG-LIASVGADGVLAVYEEVDGE-------WKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDGIVNF  323 (330)
T ss_dssp             CEEEEEECTTS-CEEEEETTSCEEEEEEETTE-------EEEEEEESCTTTTSCEEEEEEC-----CCEEEEETTSEEEE
T ss_pred             ceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCc-------eEEEeccccccccceEEEEEEecCCCceEEEEecCCCcEEE
Confidence            89999999765 79999999999999987642       1222 23457877 899999998   678999999999999


Q ss_pred             EeCCC
Q 014475          295 WDPIT  299 (424)
Q Consensus       295 wd~~~  299 (424)
                      ||+++
T Consensus       324 W~~~~  328 (330)
T 2hes_X          324 WSLEK  328 (330)
T ss_dssp             EEC--
T ss_pred             EEecc
Confidence            99864

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=5e-42  Score=313.55  Aligned_cols=298  Identities=13%  Similarity=0.120  Sum_probs=243.3

Q ss_pred             EeCCCCceEEEeeCCCCCCCceEEecceeecCC-CccccCCCCceeEEEEECCCCceeeee---cCCCCeeEEEECC-CC
Q 014475           18 WDLESGAEQLRYKSCASPPHGLACVGQRFLASS-QLREQPSASSGSILYWSWSKPQVEVKS---LPAEPIKPIAANS-HG   92 (424)
Q Consensus        18 wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~l~~~~~~~g~i~vwd~~~~~~~~~~---~~~~~v~~~~~s~-~~   92 (424)
                      |++.+.+....+.+   |...|.+++  |+|++ +++++++.| |.|++||+.+++.....   .|...|.+++|+| ++
T Consensus        58 ~~~~~~~~~~~~~~---h~~~v~~~~--~~~~~~~~l~s~~~d-g~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~  131 (383)
T 3ei3_B           58 RSLKSYKLHRTASP---FDRRVTSLE--WHPTHPTTVAVGSKG-GDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNT  131 (383)
T ss_dssp             HHHTTCEEEEEECC---CSSCEEEEE--ECSSCTTEEEEEEBT-SCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEE
T ss_pred             ccccccceEEeccC---CCCCEEEEE--ECCCCCCEEEEEcCC-CeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCC
Confidence            44455566666654   557799999  99999 889998887 99999999977765443   4889999999999 78


Q ss_pred             CEEEEecCCCcEEEEEccCcceeeeecc---ccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEE
Q 014475           93 TYIAGGGQSGDIYMWEVASGRLLKKWHA---HYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLH  169 (424)
Q Consensus        93 ~~l~~~~~dg~v~iwd~~~~~~~~~~~~---~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~  169 (424)
                      ++|++++.|+.|++||+++ ..+..+..   |...|.+++|+|++++|++++.||.|++||++.            ..+.
T Consensus       132 ~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~------------~~~~  198 (383)
T 3ei3_B          132 NQLFVSSIRGATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLDG------------HEIF  198 (383)
T ss_dssp             EEEEEEETTTEEEEEETTS-CEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETTS------------CEEE
T ss_pred             CEEEEEeCCCEEEEEECCC-CceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECCC------------CEEE
Confidence            9999999999999999985 44555543   448899999999999999999999999999832            2466


Q ss_pred             eecCCcCceeEEEEEEcCcee-EEEEEeCCCcEEEEecCC----CceeeeeecCcceeEEEECC-CCCEEEEEeCCCcEE
Q 014475          170 SFTGHTLRITDIVIGYGGVSA-TIVSASEDRTCKVWSLLK----GRLLRNIVFPSVIDAIALDP-AEHVFYAGSRDGSIY  243 (424)
Q Consensus       170 ~~~~~~~~i~~~~~~~~~~~~-~l~~~~~d~~v~iwd~~~----~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~  243 (424)
                      .+..|...|.+++|+|++  . ++++++.|+.|++||+++    +..+..+.+...+.+++|+| ++.+|++++.|+.|+
T Consensus       199 ~~~~h~~~v~~~~~~~~~--~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~d~~i~  276 (383)
T 3ei3_B          199 KEKLHKAKVTHAEFNPRC--DWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTDSTKLLTTDQRNEIR  276 (383)
T ss_dssp             EEECSSSCEEEEEECSSC--TTEEEEEETTSEEEEEEGGGCCSTTCEEEEEECSSCEEEEEECTTTSCEEEEEESSSEEE
T ss_pred             EeccCCCcEEEEEECCCC--CCEEEEEeCCCEEEEEeCCCCCcccceEEEecCCCceEEEEEcCCCCCEEEEEcCCCcEE
Confidence            778899999999999998  5 899999999999999998    66777778999999999999 999999999999999


Q ss_pred             EEEcCCCCCCCCCcCceeeeeeccc----------CcCeEEEEecC-CCEEEEeCCCCcEEEEeCCCCcEEEEEec--cC
Q 014475          244 IAALNAESPSTSSYGMHIIGSLSDH----------SKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRL--AK  310 (424)
Q Consensus       244 i~d~~~~~~~~~~~~~~~~~~~~~~----------~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~~~~~~~--~~  310 (424)
                      +||+++.........  .......|          ...+..++++| +.+  +++.||.|++||+.+++++..+.+  |.
T Consensus       277 iwd~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~~~~~  352 (383)
T 3ei3_B          277 VYSSYDWSKPDQIII--HPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLRDPNAA  352 (383)
T ss_dssp             EEETTBTTSCSEEEE--CCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEECBTTBC
T ss_pred             EEECCCCcccccccc--ccccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceeeeecCCCCC
Confidence            999988653211000  00001112          23455577777 555  888999999999999999999987  45


Q ss_pred             CCeeEEEEEecCceeeeccCCCceeeccCCC
Q 014475          311 GPVNNILVVRRPLYLNLGSFSNPHTSSRRHG  341 (424)
Q Consensus       311 ~~v~~l~~s~~~~~l~~~~~d~~i~iw~~~~  341 (424)
                      +.+..++|+|++++|++++ |+.|++|++++
T Consensus       353 ~~~~~~~~s~~g~~l~s~s-d~~i~iw~~~~  382 (383)
T 3ei3_B          353 GIISLNKFSPTGDVLASGM-GFNILIWNRED  382 (383)
T ss_dssp             SCCCEEEECTTSSEEEEEE-TTEEEEEECC-
T ss_pred             ceEEEEEEecCccEEEEec-CCcEEEEecCC
Confidence            7788889999999999997 99999999874

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=8.5e-42  Score=313.48  Aligned_cols=296  Identities=18%  Similarity=0.199  Sum_probs=251.5

Q ss_pred             eCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCc-------eeeeecCCCCeeEEEECCC----C---CEE
Q 014475           30 KSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQ-------VEVKSLPAEPIKPIAANSH----G---TYI   95 (424)
Q Consensus        30 ~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~-------~~~~~~~~~~v~~~~~s~~----~---~~l   95 (424)
                      +...+|...|.+++  |+|  +++++++.| |.|++|++.+.+       ......|..+|.+++|+|+    +   ++|
T Consensus        10 ~~~~~h~~~i~~~~--~~~--~~l~s~~~d-g~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l   84 (397)
T 1sq9_A           10 NAGKAHDADIFSVS--ACN--SFTVSCSGD-GYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLV   84 (397)
T ss_dssp             EESSCSSSCEEEEE--ECS--SEEEEEETT-SEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEE
T ss_pred             hhhhhhhcCeEEEE--ecC--CeEEEEcCC-CEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEE
Confidence            33445678899999  988  788898887 999999999877       4445678999999999999    9   999


Q ss_pred             EEecCCCcEEEEEccCcce-----eeeeccc-----cCCeEEEEEc----cCCcE-EEEeeCCCcEEEEeCCcccchhcc
Q 014475           96 AGGGQSGDIYMWEVASGRL-----LKKWHAH-----YRAVTCLVFS----EDGSF-LISGSEDGCVRIWSLLTVFEECES  160 (424)
Q Consensus        96 ~~~~~dg~v~iwd~~~~~~-----~~~~~~~-----~~~i~~~~~~----~~~~~-l~s~~~dg~i~iwd~~~~~~~~~~  160 (424)
                      ++++.||.|++||+.+++.     ...+..|     ...|.+++|+    |++++ |++++.||.|++||+++.......
T Consensus        85 ~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~  164 (397)
T 1sq9_A           85 ATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNS  164 (397)
T ss_dssp             EEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHH
T ss_pred             EEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCcccccccc
Confidence            9999999999999999887     8888888     5999999999    99999 999999999999999761110000


Q ss_pred             cccccceEEee-------cCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeeec-------CcceeEEEE
Q 014475          161 QRASHLYLHSF-------TGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVF-------PSVIDAIAL  226 (424)
Q Consensus       161 ~~~~~~~~~~~-------~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~-------~~~i~~~~~  226 (424)
                      ..........+       ..|...|.+++|+|++   .+++++.|+.|++||+++++.+..+..       ...+.+++|
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~  241 (397)
T 1sq9_A          165 LTLNWSPTLELQGTVESPMTPSQFATSVDISERG---LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKF  241 (397)
T ss_dssp             TTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS---EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEE
T ss_pred             ceeeccCcceeeeeeccccCCCCCceEEEECCCc---eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEE
Confidence            00111111133       5588999999999875   899999999999999999998888875       889999999


Q ss_pred             CCCCCEEEEEeCC---CcEEEEEcCCCCCCCCCcCceeeeeecc-------------cCcCeEEEEecC-CCEEEEeCCC
Q 014475          227 DPAEHVFYAGSRD---GSIYIAALNAESPSTSSYGMHIIGSLSD-------------HSKAVTCLAYST-GDLLISGSED  289 (424)
Q Consensus       227 ~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~~~~~~-------------~~~~i~~~~~~~-~~~l~t~~~d  289 (424)
                      +|++.+|++++.|   +.|++||+++.         +.+..+..             |...|.+++|+| +++|++++.|
T Consensus       242 ~~~~~~l~~~~~d~~~g~i~i~d~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d  312 (397)
T 1sq9_A          242 SPQGSLLAIAHDSNSFGCITLYETEFG---------ERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWD  312 (397)
T ss_dssp             CSSTTEEEEEEEETTEEEEEEEETTTC---------CEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETT
T ss_pred             CCCCCEEEEEecCCCCceEEEEECCCC---------cccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCC
Confidence            9999999999999   99999999886         45666777             999999999999 9999999999


Q ss_pred             CcEEEEeCCCCcEEEEEe------cc---------------CCCeeEEEEEecC----------ceeeeccCCCceeecc
Q 014475          290 GMVRVWDPITHNIVRMFR------LA---------------KGPVNNILVVRRP----------LYLNLGSFSNPHTSSR  338 (424)
Q Consensus       290 g~i~iwd~~~~~~~~~~~------~~---------------~~~v~~l~~s~~~----------~~l~~~~~d~~i~iw~  338 (424)
                      |.|++||+++++++..+.      .|               ..+|++++|+|++          ++|++++.||.|++|+
T Consensus       313 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~  392 (397)
T 1sq9_A          313 GKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFR  392 (397)
T ss_dssp             SEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEE
T ss_pred             CeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEE
Confidence            999999999999999999      88               9999999999998          7999999999999999


Q ss_pred             CCCC
Q 014475          339 RHGS  342 (424)
Q Consensus       339 ~~~~  342 (424)
                      +.++
T Consensus       393 ~~~g  396 (397)
T 1sq9_A          393 EAGG  396 (397)
T ss_dssp             EEC-
T ss_pred             cCCC
Confidence            8765

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=3e-42  Score=311.70  Aligned_cols=292  Identities=13%  Similarity=0.166  Sum_probs=243.4

Q ss_pred             CCCCceEEecceeecCCCccccCCCC---ceeEEEEECCCCceee--eecCCCCeeEEEECCC---CCEEEEecCCCcEE
Q 014475           34 SPPHGLACVGQRFLASSQLREQPSAS---SGSILYWSWSKPQVEV--KSLPAEPIKPIAANSH---GTYIAGGGQSGDIY  105 (424)
Q Consensus        34 ~~~~~v~~~~~~~~~~~~~l~~~~~~---~g~i~vwd~~~~~~~~--~~~~~~~v~~~~~s~~---~~~l~~~~~dg~v~  105 (424)
                      +|...|.+++  |+|++..+++++..   ||.|++||+.+++...  ...|..+|.+++|+|+   +++|++|+.||.|+
T Consensus        16 ~h~~~v~~~~--~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~   93 (357)
T 3i2n_A           16 GFNYTVFDCK--WVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGNLH   93 (357)
T ss_dssp             ECSSCEEEEE--ECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTSCEE
T ss_pred             CCCCceEEEE--EcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCCeEE
Confidence            3667899999  99999766655532   4999999999877643  3468899999999998   69999999999999


Q ss_pred             EEEccCcc-eeeeeccccCCeEEEEE------ccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCc---
Q 014475          106 MWEVASGR-LLKKWHAHYRAVTCLVF------SEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHT---  175 (424)
Q Consensus       106 iwd~~~~~-~~~~~~~~~~~i~~~~~------~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~---  175 (424)
                      +||+.+++ .+..+.+|...|.++.|      +|++++|++++.||.|++||++++.          .....+..|.   
T Consensus        94 iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~----------~~~~~~~~~~~~~  163 (357)
T 3i2n_A           94 IWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKD----------DPVANMEPVQGEN  163 (357)
T ss_dssp             EECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCS----------SCSEEECCCTTSC
T ss_pred             EEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCC----------CcceeccccCCCC
Confidence            99999988 88899999999999965      6789999999999999999997632          1233444443   


Q ss_pred             -CceeEEE----EEEcCceeEEEEEeCCCcEEEEecCCCceeeeeecCcceeEEEECC---CCCEEEEEeCCCcEEEEEc
Q 014475          176 -LRITDIV----IGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDP---AEHVFYAGSRDGSIYIAAL  247 (424)
Q Consensus       176 -~~i~~~~----~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~i~~~~~~~---~~~~l~~~~~dg~i~i~d~  247 (424)
                       ..+.+++    |++++  .++++++.|+.|++||+++++......+...+.+++|+|   ++.++++++.||.|++||+
T Consensus       164 ~~~v~~~~~~~~~~~~~--~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~  241 (357)
T 3i2n_A          164 KRDCWTVAFGNAYNQEE--RVVCAGYDNGDIKLFDLRNMALRWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDM  241 (357)
T ss_dssp             CCCEEEEEEECCCC-CC--CEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEE
T ss_pred             CCceEEEEEEeccCCCC--CEEEEEccCCeEEEEECccCceeeecCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeC
Confidence             3788888    56777  899999999999999999999887777999999999999   9999999999999999999


Q ss_pred             CCCCCCCCCcCceeeeeecccCcCeEEEEecC-CC-EEEEeCCCCcEEEEeCCCC-------------------cEEEEE
Q 014475          248 NAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GD-LLISGSEDGMVRVWDPITH-------------------NIVRMF  306 (424)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~-~l~t~~~dg~i~iwd~~~~-------------------~~~~~~  306 (424)
                      +.......    .....+.+|...|++++|+| +. +|++++.||.|++||++++                   +++..+
T Consensus       242 ~~~~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  317 (357)
T 3i2n_A          242 RTQHPTKG----FASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNV  317 (357)
T ss_dssp             EEEETTTE----EEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEE
T ss_pred             cCCCcccc----eeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeecc
Confidence            88642211    11223458999999999999 66 8999999999999998754                   467788


Q ss_pred             eccCCCeeEEEEEecCceee-eccCCCceeeccCCCCC
Q 014475          307 RLAKGPVNNILVVRRPLYLN-LGSFSNPHTSSRRHGSQ  343 (424)
Q Consensus       307 ~~~~~~v~~l~~s~~~~~l~-~~~~d~~i~iw~~~~~~  343 (424)
                      ..|.++|++++|+|++++|+ +++.||.|++|++...+
T Consensus       318 ~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~~  355 (357)
T 3i2n_A          318 TLSTQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKLN  355 (357)
T ss_dssp             ECCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECC--
T ss_pred             ccCCCCeeEEEEcCCCCeEEEEecCCCcEEEEECCCcc
Confidence            89999999999999999998 89999999999987543

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2e-42  Score=319.62  Aligned_cols=296  Identities=15%  Similarity=0.217  Sum_probs=251.9

Q ss_pred             ceEEecceeecCCC-ccccC----------CCCceeEEEEECCCCc---eeeeecCCCCeeEEEECCCCCEEEEecCCCc
Q 014475           38 GLACVGQRFLASSQ-LREQP----------SASSGSILYWSWSKPQ---VEVKSLPAEPIKPIAANSHGTYIAGGGQSGD  103 (424)
Q Consensus        38 ~v~~~~~~~~~~~~-~l~~~----------~~~~g~i~vwd~~~~~---~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~  103 (424)
                      .+.+++  |+|+++ +++++          +.+ +.|++||+.+++   ......|...|.+++|+|++++|++|+.||.
T Consensus        14 ~v~~~~--~sp~g~~~l~~g~~~g~~~~~~~~d-~~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~   90 (416)
T 2pm9_A           14 RTATFA--WSHDKIPLLVSGTVSGTVDANFSTD-SSLELWSLLAADSEKPIASLQVDSKFNDLDWSHNNKIIAGALDNGS   90 (416)
T ss_dssp             ESCBCC--BCSSSSCEEEEBCBSSCCCSSCCCC-CCCEEEESSSGGGCSCSCCCCCSSCEEEEEECSSSSCEEEEESSSC
T ss_pred             hcceEe--eCCCCCCEEEEEecCcccccccCCC-CeEEEEEccCCCCCcEEEEEecCCceEEEEECCCCCeEEEEccCCe
Confidence            466777  999987 77777          555 999999998765   3344568889999999999999999999999


Q ss_pred             EEEEEccC----cceeeeeccccCCeEEEEEccC-CcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCce
Q 014475          104 IYMWEVAS----GRLLKKWHAHYRAVTCLVFSED-GSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRI  178 (424)
Q Consensus       104 v~iwd~~~----~~~~~~~~~~~~~i~~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i  178 (424)
                      |++||+.+    .+.+..+.+|...|.+++|+|+ +++|++++.||.|++||+++.......  ...........|...|
T Consensus        91 v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~v  168 (416)
T 2pm9_A           91 LELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSN--YTPLTPGQSMSSVDEV  168 (416)
T ss_dssp             EEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTT--CCCBCCCCSCCSSCCC
T ss_pred             EEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCcccccc--ccccccccccCCCCCe
Confidence            99999987    3578888999999999999998 899999999999999999764310000  0111123346799999


Q ss_pred             eEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeeec-------CcceeEEEECCCC-CEEEEEeCCC---cEEEEEc
Q 014475          179 TDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVF-------PSVIDAIALDPAE-HVFYAGSRDG---SIYIAAL  247 (424)
Q Consensus       179 ~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~-------~~~i~~~~~~~~~-~~l~~~~~dg---~i~i~d~  247 (424)
                      .+++|++++. ..+++++.|+.|++||+++++.+..+..       ...+.+++|+|++ .++++++.|+   .|++||+
T Consensus       169 ~~~~~~~~~~-~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~  247 (416)
T 2pm9_A          169 ISLAWNQSLA-HVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDL  247 (416)
T ss_dssp             CEEEECSSCT-TEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEET
T ss_pred             eEEEeCCCCC-cEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeC
Confidence            9999999832 7999999999999999999998888873       6789999999987 6899999998   9999999


Q ss_pred             CCCCCCCCCcCceeeeeec-ccCcCeEEEEecC--CCEEEEeCCCCcEEEEeCCCCcEEEEEeccCCCeeEEEEEecC-c
Q 014475          248 NAESPSTSSYGMHIIGSLS-DHSKAVTCLAYST--GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRP-L  323 (424)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~--~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~-~  323 (424)
                      +...        .+...+. +|...|.+++|+|  +++|++++.||.|++||+++++++..+..|.++|.+++|+|++ .
T Consensus       248 ~~~~--------~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~  319 (416)
T 2pm9_A          248 RNAN--------TPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPD  319 (416)
T ss_dssp             TSTT--------SCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSSCCCCEEECTTCTT
T ss_pred             CCCC--------CCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCCceEEEEECCCCCC
Confidence            9863        3455666 8999999999998  7899999999999999999999999999999999999999999 8


Q ss_pred             eeeeccCCCceeeccCCCCCCCCC
Q 014475          324 YLNLGSFSNPHTSSRRHGSQLPPP  347 (424)
Q Consensus       324 ~l~~~~~d~~i~iw~~~~~~~~~~  347 (424)
                      +|++++.|+.|++|++........
T Consensus       320 ~l~s~~~d~~i~iw~~~~~~~~~~  343 (416)
T 2pm9_A          320 LFACASFDNKIEVQTLQNLTNTLD  343 (416)
T ss_dssp             EEEECCSSSEEEEEESCCCCCSSC
T ss_pred             EEEEEecCCcEEEEEccCCCCCcc
Confidence            999999999999999987765443

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=2.3e-41  Score=300.89  Aligned_cols=275  Identities=19%  Similarity=0.305  Sum_probs=231.0

Q ss_pred             EEEeecCCCCCceEEEeCCCC-----ceEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCceee-e
Q 014475            3 LLIASSSVADTGIGCWDLESG-----AEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEV-K   76 (424)
Q Consensus         3 ~~lat~~~~dg~i~vwd~~~~-----~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~-~   76 (424)
                      .+|++|+ .|++|++||+...     ..+..+++   |...|.+++  |+|+++++++++.| ++|++||+.+++... .
T Consensus        31 ~~l~s~s-~D~~v~~W~~~~~~~~~~~~~~~~~~---h~~~v~~~~--~s~dg~~l~s~s~D-~~v~~wd~~~~~~~~~~  103 (319)
T 3frx_A           31 NLLLSAS-RDKTLISWKLTGDDQKFGVPVRSFKG---HSHIVQDCT--LTADGAYALSASWD-KTLRLWDVATGETYQRF  103 (319)
T ss_dssp             TEEEEEE-TTSEEEEEEEEEETTEEEEEEEEEEC---CSSCEEEEE--ECTTSSEEEEEETT-SEEEEEETTTTEEEEEE
T ss_pred             cEEEEec-CCccEEEecCCCCCccccccceEEeC---CcccEEEEE--ECCCCCEEEEEeCC-CEEEEEECCCCCeeEEE
Confidence            4789999 9999999998643     34555655   456788888  99999999999998 999999999887654 3


Q ss_pred             ecCCCCeeEEEECCCCCEEEEecCCCcEEEEEccCcceeeeeccccCCeEEEEEccC------CcEEEEeeCCCcEEEEe
Q 014475           77 SLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSED------GSFLISGSEDGCVRIWS  150 (424)
Q Consensus        77 ~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~------~~~l~s~~~dg~i~iwd  150 (424)
                      ..|..+|.+++|+|++.+|++|+.|+.|++||++ ++.+..+.+|...|.++.|+|+      +..+++++.|+.|++||
T Consensus       104 ~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd  182 (319)
T 3frx_A          104 VGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWN  182 (319)
T ss_dssp             ECCSSCEEEEEECTTSCEEEEEETTSCEEEEETT-SCEEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEE
T ss_pred             ccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC-CCeEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEE
Confidence            5689999999999999999999999999999985 5677788899999999999985      44899999999999999


Q ss_pred             CCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeeecCcceeEEEECCCC
Q 014475          151 LLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAE  230 (424)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~i~~~~~~~~~  230 (424)
                      +++           ......+.+|...|.+++|+|++  .+|++++.||.|++||+++++.+..+.....+.+++|+|++
T Consensus       183 ~~~-----------~~~~~~~~~h~~~v~~~~~sp~g--~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~  249 (319)
T 3frx_A          183 LNQ-----------FQIEADFIGHNSNINTLTASPDG--TLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNR  249 (319)
T ss_dssp             TTT-----------TEEEEEECCCCSCEEEEEECTTS--SEEEEEETTCEEEEEETTTTEEEEEEECCSCEEEEEECSSS
T ss_pred             CCc-----------chhheeecCCCCcEEEEEEcCCC--CEEEEEeCCCeEEEEECCCCcEEEEecCCCcEEEEEEcCCC
Confidence            954           34566788999999999999998  89999999999999999999999999888899999999999


Q ss_pred             CEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCCC
Q 014475          231 HVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITH  300 (424)
Q Consensus       231 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~  300 (424)
                      .++++++.+ .+++|+++......... .........|...+.+++|+| +++|++|+.||.|++||+.++
T Consensus       250 ~~la~~~~~-~i~v~~~~~~~~~~~~~-~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~t~  318 (319)
T 3frx_A          250 YWLAAATAT-GIKVFSLDPQYLVDDLR-PEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMTA  318 (319)
T ss_dssp             SEEEEEETT-EEEEEEETTEEEEEEEC-CCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEEEEEC
T ss_pred             CEEEEEcCC-CcEEEEeCcCeeeeccC-ccccccccCcCcceeEEEECCCCCEEEEeecCceEEEEEEeec
Confidence            999988765 59999998752110000 000011234677899999999 999999999999999998764

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=2.4e-42  Score=311.75  Aligned_cols=275  Identities=16%  Similarity=0.200  Sum_probs=218.9

Q ss_pred             EEeecCCC------CCceEEEeCCCCceEEEeeC-CCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCcee--
Q 014475            4 LIASSSVA------DTGIGCWDLESGAEQLRYKS-CASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVE--   74 (424)
Q Consensus         4 ~lat~~~~------dg~i~vwd~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~--   74 (424)
                      +||+++ .      |+.|++|+..++.....+.. ...|...|.+++  |+|++++++ ++.+ |+|++||+.+++..  
T Consensus        56 ~las~s-~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~--~s~d~~~l~-~s~d-g~v~lWd~~~~~~~~~  130 (357)
T 4g56_B           56 LLLAAS-SLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVA--WVSEKGILV-ASDS-GAVELWEILEKESLLV  130 (357)
T ss_dssp             EEEEEE-CSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEE--EETTTEEEE-EETT-SCEEEC--------CC
T ss_pred             EEEEEc-CCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEE--EcCCCCEEE-EECC-CEEEEeeccccceeEE
Confidence            688888 7      77899999888765433321 123556799999  999987654 5555 99999999876533  


Q ss_pred             ---eeecCCCCeeEEEECCCCCEEEEecCCCcEEEEEccCcceeeeeccccCCeEEEEEccCCc-EEEEeeCCCcEEEEe
Q 014475           75 ---VKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGS-FLISGSEDGCVRIWS  150 (424)
Q Consensus        75 ---~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~s~~~dg~i~iwd  150 (424)
                         ....|...|++++|+|++++|++|+.||.|++||+++++.+..+.+|...|++++|+|++. ++++++.||.|++||
T Consensus       131 ~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd  210 (357)
T 4g56_B          131 NKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWD  210 (357)
T ss_dssp             CCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECC
T ss_pred             EeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEE
Confidence               2235889999999999999999999999999999999999999999999999999999774 789999999999999


Q ss_pred             CCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeee-cCcceeEEEECCC
Q 014475          151 LLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPA  229 (424)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~-~~~~i~~~~~~~~  229 (424)
                      ++++.         .........|...+.+++|+|++. .+|++|+.|+.|++||+++++++..+. +...|.+++|+|+
T Consensus       211 ~~~~~---------~~~~~~~~~~~~~v~~v~~sp~~~-~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~  280 (357)
T 4g56_B          211 TRKPK---------PATRIDFCASDTIPTSVTWHPEKD-DTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYH  280 (357)
T ss_dssp             TTSSS---------CBCBCCCTTCCSCEEEEEECTTST-TEEEEEESSSCEEEEESSCGGGCEEECCCSSCEEEEEECSS
T ss_pred             CCCCc---------eeeeeeeccccccccchhhhhccc-ceEEEeecccceeEEECCCCcEeEEEeccceeEEEEEEcCC
Confidence            97632         222233456778899999999754 789999999999999999999888887 7889999999998


Q ss_pred             C-CEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC--CCEEEEeCCCCcEEEEeCCCCcEE
Q 014475          230 E-HVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST--GDLLISGSEDGMVRVWDPITHNIV  303 (424)
Q Consensus       230 ~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~l~t~~~dg~i~iwd~~~~~~~  303 (424)
                      + ++|++|+.|+.|++||++++         +.+ ...+|...|++++|+|  +.+|++++.||+|++||+.+....
T Consensus       281 ~~~~lasgs~D~~i~iwd~~~~---------~~~-~~~~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~~~~  347 (357)
T 4g56_B          281 SSPFLASISEDCTVAVLDADFS---------EVF-RDLSHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPSEGRT  347 (357)
T ss_dssp             SSCCEEEEETTSCEEEECTTSC---------EEE-EECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC-----
T ss_pred             CCCEEEEEeCCCEEEEEECCCC---------cEe-EECCCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcc
Confidence            7 57899999999999999875         333 3447999999999998  789999999999999999765433

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=5e-41  Score=325.92  Aligned_cols=317  Identities=14%  Similarity=0.103  Sum_probs=259.9

Q ss_pred             EEeecCCCCCceEEEeCCCCceEEEeeCCCCCCCceEEecceeecC-CCccccCCCCceeEEEEECCCCceeeee-----
Q 014475            4 LIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLAS-SQLREQPSASSGSILYWSWSKPQVEVKS-----   77 (424)
Q Consensus         4 ~lat~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~l~~~~~~~g~i~vwd~~~~~~~~~~-----   77 (424)
                      +|++++ .||.|++||+.+++.+..+..|......|.+++  |+|+ ++++++++.+ |.|++||+.+++.....     
T Consensus       175 ~l~~~~-~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~--~~~~~~~~l~~~~~d-g~i~vwd~~~~~~~~~~~~~~~  250 (615)
T 1pgu_A          175 RSMTVG-DDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVE--FSPDSGEFVITVGSD-RKISCFDGKSGEFLKYIEDDQE  250 (615)
T ss_dssp             EEEEEE-TTTEEEEEETTTBEEEEEECSSSCTTCCEEEEE--ECSTTCCEEEEEETT-CCEEEEETTTCCEEEECCBTTB
T ss_pred             EEEEEe-CCCcEEEEeCCCcceeeeecccCCCCceEEEEE--ECCCCCCEEEEEeCC-CeEEEEECCCCCEeEEeccccc
Confidence            689999 999999999999999999887654333789999  9999 9999999987 99999999988876655     


Q ss_pred             cCCCCeeEEEECCCCCEEEEecCCCcEEEEEccCcceeeeeccc----cCCeEEEEEccCCcEEEEeeCCCcEEEEeCCc
Q 014475           78 LPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAH----YRAVTCLVFSEDGSFLISGSEDGCVRIWSLLT  153 (424)
Q Consensus        78 ~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~----~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~  153 (424)
                      .|..+|.+++|+ ++++|++++.||.|++||+++++.+..+..+    ...+.++.|. +++++++++.||.|++||+.+
T Consensus       251 ~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~g~i~~~d~~~  328 (615)
T 1pgu_A          251 PVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVAT-GNGRIISLSLDGTLNFYELGH  328 (615)
T ss_dssp             CCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEE-ETTEEEEEETTSCEEEEETTE
T ss_pred             ccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeC-CCCeEEEEECCCCEEEEECCC
Confidence            789999999999 9999999999999999999999988888766    4678888886 888999999999999999976


Q ss_pred             ccchhccccc----------------------------------------------------------------------
Q 014475          154 VFEECESQRA----------------------------------------------------------------------  163 (424)
Q Consensus       154 ~~~~~~~~~~----------------------------------------------------------------------  163 (424)
                      +.........                                                                      
T Consensus       329 ~~~~~~~~~~~~~v~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~  408 (615)
T 1pgu_A          329 DEVLKTISGHNKGITALTVNPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSSISWDDTLKVNGITKHEFGSQ  408 (615)
T ss_dssp             EEEEEEECCCSSCEEEEETTTTEEEETTSCEEETTTTEEECCCCSCEEEEECCSTTCCEEEETTTEEEETTEEEEECSSC
T ss_pred             CcEEEEEeCCCCCEEEEEecCcEEECCCCeEEEEEchhhcCcccCceEEEEECCCcEEEEEeCCCCEEEEEcccCcccCC
Confidence            3321110000                                                                      


Q ss_pred             ---------------------------ccceEEeecCCcCceeEEEEEEcCceeEEEEEeC-CCcEEEEecCCCcee-ee
Q 014475          164 ---------------------------SHLYLHSFTGHTLRITDIVIGYGGVSATIVSASE-DRTCKVWSLLKGRLL-RN  214 (424)
Q Consensus       164 ---------------------------~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~-d~~v~iwd~~~~~~~-~~  214 (424)
                                                 ....+..+ .|...+.+++++  +  ..+++++. |+.|++||+.+++.. ..
T Consensus       409 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~--~--~~l~~~~~~d~~i~~~~~~~~~~~~~~  483 (615)
T 1pgu_A          409 PKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSV-RLNSPGSAVSLS--Q--NYVAVGLEEGNTIQVFKLSDLEVSFDL  483 (615)
T ss_dssp             EEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEE-ECSSCEEEEEEC--S--SEEEEEETTTSCEEEEETTEEEEEEEC
T ss_pred             ceEEEEcCCCCEEEEeCCCceEEEeccCCceeeec-ccCCCceEEEEc--C--CEEEEeecCCCeEEEEECCCccccccc
Confidence                                       00000000 123334444444  2  56777777 888888887776553 22


Q ss_pred             ee-cCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecc-cCcCeEEEEecC-----------CC
Q 014475          215 IV-FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSD-HSKAVTCLAYST-----------GD  281 (424)
Q Consensus       215 ~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~-----------~~  281 (424)
                      +. +...|.+++|+|++++|++++.||.|++||+.++         +.+..+.+ |...|++++|+|           ++
T Consensus       484 ~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~---------~~~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~  554 (615)
T 1pgu_A          484 KTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSR---------EVKTSRWAFRTSKINAISWKPAEKGANEEEIEED  554 (615)
T ss_dssp             SSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT---------EEEECCSCCCSSCEEEEEECCCC------CCSCC
T ss_pred             cCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCCC---------cceeEeecCCCCceeEEEEcCccccccccccCCC
Confidence            22 7789999999999999999999999999999986         55667777 999999999998           67


Q ss_pred             EEEEeCCCCcEEEEeCCCC-cEEEEEeccCCCeeEEEEEecCceeeeccCCCceeeccCCC
Q 014475          282 LLISGSEDGMVRVWDPITH-NIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHG  341 (424)
Q Consensus       282 ~l~t~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~d~~i~iw~~~~  341 (424)
                      +|++++.||.|++||+.++ +++..+.+|..+|++++|+|+++ |++++.||.|++|++..
T Consensus       555 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~l~~s~~~~-l~s~~~d~~v~iw~~~~  614 (615)
T 1pgu_A          555 LVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPST-LVSSGADACIKRWNVVL  614 (615)
T ss_dssp             EEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETTE-EEEEETTSCEEEEEEC-
T ss_pred             EEEEEcCCCcEEEEECCCCceechhhhcCccceEEEEEcCCCC-eEEecCCceEEEEeeec
Confidence            9999999999999999998 78899999999999999999999 99999999999999874

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=7.5e-42  Score=342.28  Aligned_cols=328  Identities=12%  Similarity=0.088  Sum_probs=244.2

Q ss_pred             EEeecCCCCCceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCcee---------
Q 014475            4 LIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVE---------   74 (424)
Q Consensus         4 ~lat~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~---------   74 (424)
                      +||+++ .|++|+|||+++++.+..+.    +...|.+++  |+|+++++++++.+ |.|++||+++.+..         
T Consensus        71 ~L~S~s-~D~~v~lWd~~~~~~~~~~~----~~~~V~~v~--~sp~g~~l~sgs~d-g~V~lwd~~~~~~~~~~i~~~~~  142 (902)
T 2oaj_A           71 YLVVIN-AKDTVYVLSLYSQKVLTTVF----VPGKITSID--TDASLDWMLIGLQN-GSMIVYDIDRDQLSSFKLDNLQK  142 (902)
T ss_dssp             EEEEEE-TTCEEEEEETTTCSEEEEEE----CSSCEEEEE--CCTTCSEEEEEETT-SCEEEEETTTTEEEEEEECCHHH
T ss_pred             EEEEEE-CcCeEEEEECCCCcEEEEEc----CCCCEEEEE--ECCCCCEEEEEcCC-CcEEEEECCCCccccceeccccc
Confidence            689999 99999999999999998885    335789999  99999999999998 99999999987653         


Q ss_pred             ---eeecCCCCeeEEEECCC-CCEEEEecCCCcEEEEEccCcceeeeeccc------------------cCCeEEEEEcc
Q 014475           75 ---VKSLPAEPIKPIAANSH-GTYIAGGGQSGDIYMWEVASGRLLKKWHAH------------------YRAVTCLVFSE  132 (424)
Q Consensus        75 ---~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~------------------~~~i~~~~~~~  132 (424)
                         ....|.++|.+++|+|+ +..+++|+.||.| +||+++++.+..+..|                  ...|.+++|+|
T Consensus       143 ~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fsp  221 (902)
T 2oaj_A          143 SSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHP  221 (902)
T ss_dssp             HHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECT
T ss_pred             cccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcC
Confidence               11347889999999996 5789999999999 9999999888777655                  57799999999


Q ss_pred             CCcEEEEeeCCCcEEEEeCCcccchhcccc-----ccc--ceEEeecCCcCceeEEEEEEcC------------------
Q 014475          133 DGSFLISGSEDGCVRIWSLLTVFEECESQR-----ASH--LYLHSFTGHTLRITDIVIGYGG------------------  187 (424)
Q Consensus       133 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-----~~~--~~~~~~~~~~~~i~~~~~~~~~------------------  187 (424)
                      ++++|++++.||.|++||++++........     ...  ........|..+|.+++|++..                  
T Consensus       222 dg~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~  301 (902)
T 2oaj_A          222 NSLHIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGD  301 (902)
T ss_dssp             TSSEEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSS
T ss_pred             CCCEEEEEECCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCC
Confidence            999999999999999999977432110000     000  0000000012233333332210                  


Q ss_pred             -------------------------------------------------------------ceeEEEEEeCCCcEEEEec
Q 014475          188 -------------------------------------------------------------VSATIVSASEDRTCKVWSL  206 (424)
Q Consensus       188 -------------------------------------------------------------~~~~l~~~~~d~~v~iwd~  206 (424)
                                                                                   +...+++++.|+.|++||+
T Consensus       302 ~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~  381 (902)
T 2oaj_A          302 NQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLY  381 (902)
T ss_dssp             CCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEET
T ss_pred             CceEEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEEC
Confidence                                                                         0124566666777778877


Q ss_pred             CCCceeee-------ee-cCc----------------------------------ceeEEEECCCCCEEEEEeCCCcEEE
Q 014475          207 LKGRLLRN-------IV-FPS----------------------------------VIDAIALDPAEHVFYAGSRDGSIYI  244 (424)
Q Consensus       207 ~~~~~~~~-------~~-~~~----------------------------------~i~~~~~~~~~~~l~~~~~dg~i~i  244 (424)
                      .++.....       +. +..                                  .+..++|+|++++|++|+.|++|++
T Consensus       382 ~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrl  461 (902)
T 2oaj_A          382 PSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRI  461 (902)
T ss_dssp             TTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEE
T ss_pred             CCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEE
Confidence            65543221       00 112                                  2334556789999999999999999


Q ss_pred             EEcCCCCCCCCCcCceeeeee-----cccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCCC------------------
Q 014475          245 AALNAESPSTSSYGMHIIGSL-----SDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITH------------------  300 (424)
Q Consensus       245 ~d~~~~~~~~~~~~~~~~~~~-----~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~------------------  300 (424)
                      ||+..+..... .  .....+     .+|...|.+++|+| +++||+|+.||+|+|||+.++                  
T Consensus       462 Wd~~~g~~~~~-~--~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~  538 (902)
T 2oaj_A          462 YDASHGDIQDN-A--SFEVNLSRTLNKAKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNF  538 (902)
T ss_dssp             EESSCCTTTTT-B--CEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC---------------C
T ss_pred             EECCCccccCC-c--eEEeechhhcCCCCCCceeEEEecCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceee
Confidence            99988742110 0  001112     27899999999999 999999999999999999866                  


Q ss_pred             ---------------------------cEEEEEeccCCCeeEEEEEecCceeeeccCCCceeeccCCCCCC
Q 014475          301 ---------------------------NIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGSQL  344 (424)
Q Consensus       301 ---------------------------~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~d~~i~iw~~~~~~~  344 (424)
                                                 +++..+.+|.++|++++|+||| +||+|+.|++|++||+.+...
T Consensus       539 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG-~lAsgs~D~tv~lwd~~~~~~  608 (902)
T 2oaj_A          539 RRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG-FVGIAYAAGSLMLIDRRGPAI  608 (902)
T ss_dssp             CSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS-EEEEEETTSEEEEEETTTTEE
T ss_pred             eeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCc-EEEEEeCCCcEEEEECCCCeE
Confidence                                       2467888999999999999999 999999999999999887543

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=1.9e-41  Score=333.01  Aligned_cols=285  Identities=19%  Similarity=0.303  Sum_probs=240.3

Q ss_pred             CCCCceEEecceeecCC-CccccCCCCceeEEEEECCCCce------eeeecCCCCeeEEEECCCCCEEEEecCCCcEEE
Q 014475           34 SPPHGLACVGQRFLASS-QLREQPSASSGSILYWSWSKPQV------EVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYM  106 (424)
Q Consensus        34 ~~~~~v~~~~~~~~~~~-~~l~~~~~~~g~i~vwd~~~~~~------~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~i  106 (424)
                      +|...|.+++  |+|++ ++|++++.| |+|++|++.....      .....|...|.+++|+|++++|++|+.||.|++
T Consensus       380 ~H~~~V~~v~--~~~~~~~~l~s~s~D-~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~v  456 (694)
T 3dm0_A          380 AHTDMVTAIA--TPIDNADIIVSASRD-KSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRL  456 (694)
T ss_dssp             CCSSCEEEEE--CCTTCCSEEEEEETT-SEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred             cCCceeEEEE--ecCCCCCEEEEEeCC-CcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEEE
Confidence            4567899998  99875 677888887 9999999976432      234568999999999999999999999999999


Q ss_pred             EEccCcceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEc
Q 014475          107 WEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYG  186 (424)
Q Consensus       107 wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  186 (424)
                      ||+.++.....+.+|...|.+++|+|++++|++++.|++|++||.....        .........+|...|.+++|+|+
T Consensus       457 wd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~--------~~~~~~~~~~h~~~v~~~~~~~~  528 (694)
T 3dm0_A          457 WDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGEC--------KYTISEGGEGHRDWVSCVRFSPN  528 (694)
T ss_dssp             EETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCE--------EEEECSSTTSCSSCEEEEEECSC
T ss_pred             EECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCc--------ceeeccCCCCCCCcEEEEEEeCC
Confidence            9999999999999999999999999999999999999999999985411        01111123578899999999998


Q ss_pred             CceeEEEEEeCCCcEEEEecCCCceeeeee-cCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeee
Q 014475          187 GVSATIVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSL  265 (424)
Q Consensus       187 ~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~  265 (424)
                      +....+++++.|++|++||+++++....+. |...|.+++|+|++++|++|+.||.|++||++++         +.+..+
T Consensus       529 ~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~---------~~~~~~  599 (694)
T 3dm0_A          529 TLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEG---------KKLYSL  599 (694)
T ss_dssp             SSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTT---------EEEECC
T ss_pred             CCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCC---------ceEEEe
Confidence            755689999999999999999998888777 8899999999999999999999999999999886         344444


Q ss_pred             cccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCCCcEEEEEeccC-------------------CCeeEEEEEecCcee
Q 014475          266 SDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAK-------------------GPVNNILVVRRPLYL  325 (424)
Q Consensus       266 ~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~-------------------~~v~~l~~s~~~~~l  325 (424)
                      . +...|.+++|+| +.+++++ .++.|++||+++++.+..+..+.                   ..+++++|+|+|++|
T Consensus       600 ~-~~~~v~~~~~sp~~~~l~~~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l  677 (694)
T 3dm0_A          600 E-ANSVIHALCFSPNRYWLCAA-TEHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTL  677 (694)
T ss_dssp             B-CSSCEEEEEECSSSSEEEEE-ETTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECTTSSEE
T ss_pred             c-CCCcEEEEEEcCCCcEEEEE-cCCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEE
Confidence            4 456799999999 6666555 56679999999999888775332                   137899999999999


Q ss_pred             eeccCCCceeeccCC
Q 014475          326 NLGSFSNPHTSSRRH  340 (424)
Q Consensus       326 ~~~~~d~~i~iw~~~  340 (424)
                      ++|+.||.|++|++.
T Consensus       678 ~sgs~Dg~i~iW~i~  692 (694)
T 3dm0_A          678 FSGYTDGVIRVWGIG  692 (694)
T ss_dssp             EEEETTSEEEEEEC-
T ss_pred             EEEcCCCeEEEEecc
Confidence            999999999999975

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.4e-40  Score=295.18  Aligned_cols=285  Identities=18%  Similarity=0.251  Sum_probs=246.8

Q ss_pred             ceEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCcee-eeecCCCCeeEEEECCCCCEEEEecCCC
Q 014475           24 AEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVE-VKSLPAEPIKPIAANSHGTYIAGGGQSG  102 (424)
Q Consensus        24 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~dg  102 (424)
                      +...++.+   |...|.+++  | ++++++++++.| |.|++||+.+.+.. ....|...|.+++|+|++++|++++.||
T Consensus         9 ~~~~~l~~---h~~~v~~~~--~-~~~~~l~s~~~d-g~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg   81 (313)
T 3odt_A            9 QLSATLKG---HDQDVRDVV--A-VDDSKVASVSRD-GTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDT   81 (313)
T ss_dssp             EEEEEECC---CSSCEEEEE--E-EETTEEEEEETT-SEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTS
T ss_pred             HHHHHhhC---CCCCcEEEE--e-cCCCEEEEEEcC-CcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCC
Confidence            55566665   457788888  9 999999999988 99999999877654 4456889999999999999999999999


Q ss_pred             cEEEEEccCc---ceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCcee
Q 014475          103 DIYMWEVASG---RLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRIT  179 (424)
Q Consensus       103 ~v~iwd~~~~---~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  179 (424)
                      .|++|++...   +.+..+.+|...|.++.|  +++++++++.||.|++||..             .....+..|...+.
T Consensus        82 ~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d~~-------------~~~~~~~~~~~~v~  146 (313)
T 3odt_A           82 MINGVPLFATSGEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWKEG-------------SLVYNLQAHNASVW  146 (313)
T ss_dssp             CEEEEETTCCTTSCC-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETT-------------EEEEEEECCSSCEE
T ss_pred             eEEEEEeeecCCCCcccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEcCC-------------cEEEecccCCCcee
Confidence            9999998765   557778899999999999  47799999999999999942             24566778999999


Q ss_pred             EEEEEE-cCceeEEEEEeCCCcEEEEecCCCceeeeee--cCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCC
Q 014475          180 DIVIGY-GGVSATIVSASEDRTCKVWSLLKGRLLRNIV--FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSS  256 (424)
Q Consensus       180 ~~~~~~-~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~  256 (424)
                      ++.+.+ ++  +.+++++.|+.|++||.  .+....+.  +...+.+++|+|++. +++++.||.|++||++++      
T Consensus       147 ~~~~~~~~~--~~l~~~~~d~~i~i~d~--~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~------  215 (313)
T 3odt_A          147 DAKVVSFSE--NKFLTASADKTIKLWQN--DKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTG------  215 (313)
T ss_dssp             EEEEEETTT--TEEEEEETTSCEEEEET--TEEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTC------
T ss_pred             EEEEccCCC--CEEEEEECCCCEEEEec--CceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCch------
Confidence            999999 55  89999999999999994  44444444  788999999999998 999999999999999886      


Q ss_pred             cCceeeeeecccCcCeEEEEecCCCEEEEeCCCCcEEEEeCCCCcEEEEEeccCCCeeEEEEEecCceeeeccCCCceee
Q 014475          257 YGMHIIGSLSDHSKAVTCLAYSTGDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTS  336 (424)
Q Consensus       257 ~~~~~~~~~~~~~~~i~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~d~~i~i  336 (424)
                         +.+..+.+|...|++++|+|...|++++.||.|++||+++++++..+..|..+|.+++|+|+++ +++++.||.|++
T Consensus       216 ---~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i  291 (313)
T 3odt_A          216 ---DVLRTYEGHESFVYCIKLLPNGDIVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCMSNGD-IIVGSSDNLVRI  291 (313)
T ss_dssp             ---CEEEEEECCSSCEEEEEECTTSCEEEEETTSEEEEECTTTCCEEEEEECSSSCEEEEEECTTSC-EEEEETTSCEEE
T ss_pred             ---hhhhhhhcCCceEEEEEEecCCCEEEEecCCEEEEEECCCCceeEEEeccCceEEEEEEccCCC-EEEEeCCCcEEE
Confidence               5677888999999999999933799999999999999999999999999999999999999998 667899999999


Q ss_pred             ccCCCCCCC
Q 014475          337 SRRHGSQLP  345 (424)
Q Consensus       337 w~~~~~~~~  345 (424)
                      |++++.+..
T Consensus       292 w~~~~~~~~  300 (313)
T 3odt_A          292 FSQEKSRWA  300 (313)
T ss_dssp             EESCGGGCC
T ss_pred             EeCCCCcee
Confidence            999876543

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=1.5e-41  Score=314.19  Aligned_cols=281  Identities=20%  Similarity=0.204  Sum_probs=238.6

Q ss_pred             eEEecceeecCCCccccCCCCceeEEEEECCCCceeeeecCCCCeeEEEECCCCCEEEEecCCCcEEEEEccCcceeeee
Q 014475           39 LACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKW  118 (424)
Q Consensus        39 v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~  118 (424)
                      +..++  |+|+++++++++.+ |.|++||..+.+..........+....|+|++++|++|+.||.|++||+.+++....+
T Consensus        59 ~~~~~--~s~~g~~l~~~~~d-~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~  135 (420)
T 3vl1_A           59 GKGNT--FEKVGSHLYKARLD-GHDFLFNTIIRDGSKMLKRADYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREID  135 (420)
T ss_dssp             CTTCE--EEEEETTEEEEEET-TEEEEEECCSEETTTTSCSCCEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEEET
T ss_pred             cccee--eeecCCeEEEEEcC-CcEEEEEecccceeeEEecCCceEEEEEecCCCEEEEEECCCCEEEEeCCCcceeeec
Confidence            44556  99999999999998 9999999987665433333344555578999999999999999999999999998888


Q ss_pred             ccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCC
Q 014475          119 HAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASED  198 (424)
Q Consensus       119 ~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d  198 (424)
                      .+|...|.+++|+|++++|++++.||.|++||+++           ...+..+.+|...|.+++|+|++  ..|++++.|
T Consensus       136 ~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~-----------~~~~~~~~~h~~~v~~~~~~~~~--~~l~s~~~d  202 (420)
T 3vl1_A          136 QAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKD-----------GSNPRTLIGHRATVTDIAIIDRG--RNVLSASLD  202 (420)
T ss_dssp             TSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTT-----------CCCCEEEECCSSCEEEEEEETTT--TEEEEEETT
T ss_pred             ccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCC-----------CcCceEEcCCCCcEEEEEEcCCC--CEEEEEcCC
Confidence            99999999999999999999999999999999965           23456678899999999999998  899999999


Q ss_pred             CcEEEEecCCCceeeeee----cC---------------------cceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCC
Q 014475          199 RTCKVWSLLKGRLLRNIV----FP---------------------SVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPS  253 (424)
Q Consensus       199 ~~v~iwd~~~~~~~~~~~----~~---------------------~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~  253 (424)
                      +.|++||+++++.+..+.    +.                     ..+.+++|+|+++++++++.||.|++||+++..  
T Consensus       203 ~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~--  280 (420)
T 3vl1_A          203 GTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKE--  280 (420)
T ss_dssp             SCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCC--
T ss_pred             CcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCc--
Confidence            999999999999888775    22                     345555668999999999999999999998874  


Q ss_pred             CCCcCceeeeeecccCcCeEEEEecC-CC-EEEEeCCCCcEEEEeCCCCcE-EEEEec-cCCCeeEEEEEecCceeeecc
Q 014475          254 TSSYGMHIIGSLSDHSKAVTCLAYST-GD-LLISGSEDGMVRVWDPITHNI-VRMFRL-AKGPVNNILVVRRPLYLNLGS  329 (424)
Q Consensus       254 ~~~~~~~~~~~~~~~~~~i~~~~~~~-~~-~l~t~~~dg~i~iwd~~~~~~-~~~~~~-~~~~v~~l~~s~~~~~l~~~~  329 (424)
                            ........|...|.+++|+| +. +|++|+.||.|++||+++++. +..+.. |..+|.++ +.+++++|++++
T Consensus       281 ------~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~s~~  353 (420)
T 3vl1_A          281 ------QTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNV-YFAAGALFVSSG  353 (420)
T ss_dssp             ------EEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEE-EEETTEEEEEET
T ss_pred             ------eeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEE-EeCCCCEEEEec
Confidence                  33444456889999999999 77 999999999999999998754 777777 56677777 556889999999


Q ss_pred             CCCceeeccCCCCCC
Q 014475          330 FSNPHTSSRRHGSQL  344 (424)
Q Consensus       330 ~d~~i~iw~~~~~~~  344 (424)
                      .|+.|++|++.....
T Consensus       354 ~d~~v~iw~~~~~~~  368 (420)
T 3vl1_A          354 FDTSIKLDIISDPES  368 (420)
T ss_dssp             TTEEEEEEEECCTTC
T ss_pred             CCccEEEEeccCCCC
Confidence            999999999986433

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.3e-42  Score=326.33  Aligned_cols=305  Identities=11%  Similarity=0.042  Sum_probs=225.8

Q ss_pred             EEeecCCCCCceEEEeCCCCceE----EEeeCCCCCCCceEEecceeecC------CCccccCCCCceeEEEEECCCCce
Q 014475            4 LIASSSVADTGIGCWDLESGAEQ----LRYKSCASPPHGLACVGQRFLAS------SQLREQPSASSGSILYWSWSKPQV   73 (424)
Q Consensus         4 ~lat~~~~dg~i~vwd~~~~~~~----~~~~~~~~~~~~v~~~~~~~~~~------~~~l~~~~~~~g~i~vwd~~~~~~   73 (424)
                      +||+++ .|++|+|||+.+++..    .++..   +...|..++  |+|+      +.+||+++.| |+|++||+..+..
T Consensus       175 ~laS~s-~D~tI~iWd~~~~~~~~~~~~~l~~---~~~~V~~v~--wsp~~~~~~~~~~LAs~s~D-gtvrlWd~~~~~~  247 (524)
T 2j04_B          175 MFDKEK-HSSCIQIFKMNTSTLHCVKVQTIVH---SFGEVWDLK--WHEGCHAPHLVGCLSFVSQE-GTINFLEIIDNAT  247 (524)
T ss_dssp             --------CEEEEEEEEETTTCCEEEEEEEEE---CCCSEEEEE--ECSSCCCSSSSCEEEEEETT-SCEEEEECCCCSS
T ss_pred             hhccCC-CCceEEEEEccCCCCCceEEEEEEe---cCCcEEEEE--ECCCCCCCCCCceEEEEecC-CeEEEEEcCCCcc
Confidence            467788 9999999999887653    23333   335688888  9986      5788888887 9999999986542


Q ss_pred             e------------eeecCCCCeeEEEECCCCCEEEEecCCCcEEEEEccCcc-eeeeeccccCCeEEE--EEccCC-cEE
Q 014475           74 E------------VKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGR-LLKKWHAHYRAVTCL--VFSEDG-SFL  137 (424)
Q Consensus        74 ~------------~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~-~~~~~~~~~~~i~~~--~~~~~~-~~l  137 (424)
                      .            ....|...|++++|+|++ .|++|+.||+|++||++++. ....+.+|...|.++  .|+|++ ++|
T Consensus       248 ~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~-~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~l  326 (524)
T 2j04_B          248 DVHVFKMCEKPSLTLSLADSLITTFDFLSPT-TVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVV  326 (524)
T ss_dssp             SSSEEECCCSCSEEECCTTTCEEEEEESSSS-EEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEE
T ss_pred             ccccceeecCceEEEEcCCCCEEEEEecCCC-eEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEE
Confidence            1            234578899999999864 89999999999999998774 455688999999999  567887 899


Q ss_pred             EEeeCCCcEEEEeCCcccchhcccccccceEEeecCCc--CceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeee
Q 014475          138 ISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHT--LRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNI  215 (424)
Q Consensus       138 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~  215 (424)
                      ++|+.|++|++||++++.           ....+.+|.  ..|.+++|+|++  ..+++++.|++|++||++++.++..+
T Consensus       327 aS~S~D~tvklWD~~~~~-----------~~~~~~~~~~~~~v~~v~fsp~~--~~l~s~~~d~tv~lwd~~~~~~~~~l  393 (524)
T 2j04_B          327 STVAVDGYFYIFNPKDIA-----------TTKTTVSRFRGSNLVPVVYCPQI--YSYIYSDGASSLRAVPSRAAFAVHPL  393 (524)
T ss_dssp             EEEETTSEEEEECGGGHH-----------HHCEEEEECSCCSCCCEEEETTT--TEEEEECSSSEEEEEETTCTTCCEEE
T ss_pred             EEeccCCeEEEEECCCCC-----------cccccccccccCcccceEeCCCc--CeEEEeCCCCcEEEEECcccccceee
Confidence            999999999999996632           122333443  357899999988  78999999999999999998876666


Q ss_pred             e-cCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeec-----ccCcCeEEEEecC-CCEEEEeCC
Q 014475          216 V-FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLS-----DHSKAVTCLAYST-GDLLISGSE  288 (424)
Q Consensus       216 ~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~-----~~~~~i~~~~~~~-~~~l~t~~~  288 (424)
                      . |...|.+++|+|++++|++|+.||+|++||.....          .....     .+...+.+++|+| ++.+ ....
T Consensus       394 ~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~~----------~~~~~~~~~~~~~~~v~~v~~sp~g~~~-~~~~  462 (524)
T 2j04_B          394 VSRETTITAIGVSRLHPMVLAGSADGSLIITNAARRL----------LHGIKNSSATQKSLRLWKWDYSIKDDKY-RIDS  462 (524)
T ss_dssp             EECSSCEEEEECCSSCCBCEEEETTTEEECCBSCSST----------TTCC------CCCCEEEECBCCSSSCEE-EECC
T ss_pred             ecCCCceEEEEeCCCCCeEEEEECCCEEEEEechHhh----------ccccccCccceeeeEEEEeccCCCCCeE-EccC
Confidence            5 89999999999999999999999999999986532          11111     1223577899999 6644 3322


Q ss_pred             CCcEEEEeCC-CCcEEEEEeccCCCeeEEEEEecCc---eeeeccCCCceeeccCCCC
Q 014475          289 DGMVRVWDPI-THNIVRMFRLAKGPVNNILVVRRPL---YLNLGSFSNPHTSSRRHGS  342 (424)
Q Consensus       289 dg~i~iwd~~-~~~~~~~~~~~~~~v~~l~~s~~~~---~l~~~~~d~~i~iw~~~~~  342 (424)
                      +  +.+|+.. ++.++..+.+|.++|.+++|+|+++   .||+|+.||.|++|++...
T Consensus       463 ~--~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~l~~~  518 (524)
T 2j04_B          463 S--YEVYPLTVNDVSKAKIDAHGINITCTKWNETSAGGKCYAFSNSAGLLTLEYLSLE  518 (524)
T ss_dssp             C--CCCCC-------------CCCSCCCEEECCSTTTTTEEEEECTTSEEEEEECSCC
T ss_pred             C--ceecccccCCcceeeecCCCceEEEEECCCCCCccHHHHhhccCceEEEEEcccc
Confidence            2  3344433 5778888999999999999999964   9999999999999998855

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=1.7e-41  Score=354.41  Aligned_cols=326  Identities=19%  Similarity=0.225  Sum_probs=283.3

Q ss_pred             EEEeecCCCCCceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCceee-------
Q 014475            3 LLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEV-------   75 (424)
Q Consensus         3 ~~lat~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~-------   75 (424)
                      .++++++ .||.|++||+.+++.+..+.+|   ...|.+++  |+|+++.+++++.| |.|++||+.+++...       
T Consensus       714 ~~l~sg~-~d~~v~vwd~~~~~~~~~~~~h---~~~v~~~~--~sp~~~~l~s~s~d-g~v~vwd~~~~~~~~~~~~~~~  786 (1249)
T 3sfz_A          714 LLLATGS-NDFFLKLWDLNQKECRNTMFGH---TNSVNHCR--FSPDDELLASCSAD-GTLRLWDVRSANERKSINVKRF  786 (1249)
T ss_dssp             CEEEEEE-TTSCEEEEETTSSSEEEEECCC---SSCEEEEE--ECSSTTEEEEEESS-SEEEEEEGGGTEEEEEEECCCC
T ss_pred             eEEEEEe-CCCeEEEEECCCcchhheecCC---CCCEEEEE--EecCCCEEEEEECC-CeEEEEeCCCCcccceeccccc
Confidence            4789999 9999999999999999888764   46788888  99999999999998 999999986543211       


Q ss_pred             -------------------------------------------------eecCCCCeeEEEECCCCCEEEEecCCCcEEE
Q 014475           76 -------------------------------------------------KSLPAEPIKPIAANSHGTYIAGGGQSGDIYM  106 (424)
Q Consensus        76 -------------------------------------------------~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~i  106 (424)
                                                                       ...|...|.+++|+|+++++++++.||.|++
T Consensus       787 ~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~v  866 (1249)
T 3sfz_A          787 FLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVEL  866 (1249)
T ss_dssp             C--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEE
T ss_pred             ccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEE
Confidence                                                             1145678999999999999999999999999


Q ss_pred             EEccCcceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhc---------------------------
Q 014475          107 WEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECE---------------------------  159 (424)
Q Consensus       107 wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~---------------------------  159 (424)
                      ||+.++..+..+.+|...|.+++|+|+++++++++.||.|++||+.+......                           
T Consensus       867 wd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  946 (1249)
T 3sfz_A          867 WNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGL  946 (1249)
T ss_dssp             EETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSE
T ss_pred             EEcCCCceeeecCCCccceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcce
Confidence            99999999999999999999999999999999999999999999753210000                           


Q ss_pred             -----------------------------------------ccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCC
Q 014475          160 -----------------------------------------SQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASED  198 (424)
Q Consensus       160 -----------------------------------------~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d  198 (424)
                                                               ...........+.+|...|++++|+|++  +++++++.|
T Consensus       947 ~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg--~~l~s~~~d 1024 (1249)
T 3sfz_A          947 QLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADG--KTLISSSED 1024 (1249)
T ss_dssp             EEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECSSS--SCEEEECSS
T ss_pred             EEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCceEEEEECCCC--CEEEEEcCC
Confidence                                                     0001123345567899999999999998  899999999


Q ss_pred             CcEEEEecCCCceeeeeecCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEec
Q 014475          199 RTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYS  278 (424)
Q Consensus       199 ~~v~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  278 (424)
                      |.|++||+.+++......+...+.+++++|++ .+++++.||.|++||+.++         +....+.+|...|++++|+
T Consensus      1025 g~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~v~vwd~~~~---------~~~~~~~~~~~~v~~~~~s 1094 (1249)
T 3sfz_A         1025 SVIQVWNWQTGDYVFLQAHQETVKDFRLLQDS-RLLSWSFDGTVKVWNVITG---------RIERDFTCHQGTVLSCAIS 1094 (1249)
T ss_dssp             SBEEEEETTTTEEECCBCCSSCEEEEEECSSS-EEEEEESSSEEEEEETTTT---------CCCEEEECCSSCCCCEEEC
T ss_pred             CEEEEEECCCCceEEEecCCCcEEEEEEcCCC-cEEEEECCCcEEEEECCCC---------ceeEEEcccCCcEEEEEEC
Confidence            99999999999888777799999999999965 5788999999999999887         4566788899999999999


Q ss_pred             C-CCEEEEeCCCCcEEEEeCCCCcEEEEEeccCCCeeEEEEEecCceeeeccCCCceeeccCCCCCCCCC
Q 014475          279 T-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGSQLPPP  347 (424)
Q Consensus       279 ~-~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~  347 (424)
                      | ++++++++.||.|++||+.+++++..+.+|.++|++++|+|++++|++++.||.|++|++.+++....
T Consensus      1095 ~d~~~l~s~s~d~~v~iwd~~~~~~~~~l~~h~~~v~~~~~s~dg~~lat~~~dg~i~vwd~~~~~~~~~ 1164 (1249)
T 3sfz_A         1095 SDATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHS 1164 (1249)
T ss_dssp             SSSSSCEEECCSSCCCEECSSSSSCSBCCCCCSSCEEEEEECSSSSEEEEEETTSCCCEEESSSSCCCCC
T ss_pred             CCCCEEEEEcCCCcEEEEECCCcceeeeeccCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEE
Confidence            9 99999999999999999999999999999999999999999999999999999999999998776544

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.3e-40  Score=308.11  Aligned_cols=301  Identities=13%  Similarity=0.187  Sum_probs=248.1

Q ss_pred             CCceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCC-ccccCCCCceeEEEEEC----CCCc------eeeee-c-
Q 014475           12 DTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQ-LREQPSASSGSILYWSW----SKPQ------VEVKS-L-   78 (424)
Q Consensus        12 dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~~~~~~~g~i~vwd~----~~~~------~~~~~-~-   78 (424)
                      ...+.+|+++..........   |...|.+++  |+|+++ ++++++.+ |.|++|++    .+++      ..... . 
T Consensus        24 ~~~~~~~~~~~~~~~~~~~~---~~~~v~~~~--~s~~~~~~l~~~~~d-g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~   97 (425)
T 1r5m_A           24 NSIDSSDDLDGFVKILKEIV---KLDNIVSST--WNPLDESILAYGEKN-SVARLARIVETDQEGKKYWKLTIIAELRHP   97 (425)
T ss_dssp             ----------CCCEECEEEE---ECSCCSEEE--ECSSCTTEEEEEETB-TEEEEEEEEEC------CEEEEEEEEEECC
T ss_pred             ccccccccchhhhhheeeee---ccCceEEEE--ECCCCCcEEEEecCC-ceEEEEEEecccCCcccccccccccccccc
Confidence            34567888765544433332   346688888  999999 99999887 99999999    7766      22221 2 


Q ss_pred             ---------CCCCeeEEEECCCCCEEEEecCCCcEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEE
Q 014475           79 ---------PAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIW  149 (424)
Q Consensus        79 ---------~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iw  149 (424)
                               |...|.+++|+|++++|++++.||.|++|| .+++.+..+..|...|.+++|+|++++|++++.||.|++|
T Consensus        98 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iw  176 (425)
T 1r5m_A           98 FALSASSGKTTNQVTCLAWSHDGNSIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILW  176 (425)
T ss_dssp             CCCC------CBCEEEEEECTTSSEEEEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEE
T ss_pred             ccccccccCCCCceEEEEEcCCCCEEEEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEE
Confidence                     466999999999999999999999999999 6788888999999999999999999999999999999999


Q ss_pred             eCCcccchhcccccccceEEeecCCcCc---------------eeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeee
Q 014475          150 SLLTVFEECESQRASHLYLHSFTGHTLR---------------ITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRN  214 (424)
Q Consensus       150 d~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~  214 (424)
                      |+.++           ..+..+..+...               +.+++|++++   .+++++.++.|++||+++++.+..
T Consensus       177 d~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~g~i~~~d~~~~~~~~~  242 (425)
T 1r5m_A          177 NVISG-----------TVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDD---KFVIPGPKGAIFVYQITEKTPTGK  242 (425)
T ss_dssp             ETTTT-----------EEEEEECCC---------------CCCBSCCEEEETT---EEEEECGGGCEEEEETTCSSCSEE
T ss_pred             ECCCC-----------cEEEEeeccccCccceeeccccCCcceeeEEEEcCCC---EEEEEcCCCeEEEEEcCCCceeee
Confidence            99653           334445555555               9999999984   689999999999999999988877


Q ss_pred             ee-cCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcE
Q 014475          215 IV-FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMV  292 (424)
Q Consensus       215 ~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i  292 (424)
                      +. +...+.+++|+|++++|++++.|+.|++||++..         .....+..|...|.+++|+| + ++++++.||.|
T Consensus       243 ~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~---------~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i  312 (425)
T 1r5m_A          243 LIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNG---------NSQNCFYGHSQSIVSASWVGDD-KVISCSMDGSV  312 (425)
T ss_dssp             ECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSB---------SCSEEECCCSSCEEEEEEETTT-EEEEEETTSEE
T ss_pred             eccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCC---------ccceEecCCCccEEEEEECCCC-EEEEEeCCCcE
Confidence            76 7889999999999999999999999999999886         44566778999999999999 6 99999999999


Q ss_pred             EEEeCCCCcEEEEEeccCCCeeEEEEEecCceeeeccCCCceeeccCCCCC
Q 014475          293 RVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGSQ  343 (424)
Q Consensus       293 ~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~d~~i~iw~~~~~~  343 (424)
                      ++||+++++.+..+..|..+|.+++|+|++++|++++.||.|++|++.+.+
T Consensus       313 ~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~  363 (425)
T 1r5m_A          313 RLWSLKQNTLLALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLN  363 (425)
T ss_dssp             EEEETTTTEEEEEEECTTCCEEEEEECTTSSEEEEEETTSCEEEEECHHHH
T ss_pred             EEEECCCCcEeEecccCCccEEEEEEcCCCCEEEEEECCCeEEEEECCCCc
Confidence            999999999999999999999999999999999999999999999998654

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=2.3e-40  Score=297.67  Aligned_cols=276  Identities=18%  Similarity=0.266  Sum_probs=223.1

Q ss_pred             EEEeecCCCCCceEEEeCCCC-------ceEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCceee
Q 014475            3 LLIASSSVADTGIGCWDLESG-------AEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEV   75 (424)
Q Consensus         3 ~~lat~~~~dg~i~vwd~~~~-------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~   75 (424)
                      .+||||+ .|++|+|||+.++       .....+.+   |...|.+++  |+|++.++++++.| ++|++||+.+++...
T Consensus        40 ~~l~sgs-~D~~v~iWd~~~~~~~~~~~~~~~~l~~---h~~~V~~~~--~~~~~~~l~s~s~D-~~v~lwd~~~~~~~~  112 (343)
T 2xzm_R           40 PVLISGS-RDKTVMIWKLYEEEQNGYFGIPHKALTG---HNHFVSDLA--LSQENCFAISSSWD-KTLRLWDLRTGTTYK  112 (343)
T ss_dssp             CEEEEEE-TTSCEEEEEECSSCCSSBSEEEEEEECC---CSSCEEEEE--ECSSTTEEEEEETT-SEEEEEETTSSCEEE
T ss_pred             CEEEEEc-CCCEEEEEECCcCCcccccccccchhcc---CCCceEEEE--ECCCCCEEEEEcCC-CcEEEEECCCCcEEE
Confidence            3799999 9999999998754       33444544   557789999  99999999999998 999999999877653


Q ss_pred             -eecCCCCeeEEEECCCCCEEEEecCCCcEEEEEccCcceeeee---ccccCCeEEEEEccCC----------cEEEEee
Q 014475           76 -KSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKW---HAHYRAVTCLVFSEDG----------SFLISGS  141 (424)
Q Consensus        76 -~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~---~~~~~~i~~~~~~~~~----------~~l~s~~  141 (424)
                       ...|..+|.+++|+|++++|++++.|+.|++||+... .....   ..|...|.+++|+|++          .+|++++
T Consensus       113 ~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~  191 (343)
T 2xzm_R          113 RFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGE-CKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVG  191 (343)
T ss_dssp             EEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSC-EEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEE
T ss_pred             EEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCC-ceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEc
Confidence             3568999999999999999999999999999999743 33232   3688999999999986          7899999


Q ss_pred             CCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecC-CCceeeeeecCcc
Q 014475          142 EDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLL-KGRLLRNIVFPSV  220 (424)
Q Consensus       142 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~-~~~~~~~~~~~~~  220 (424)
                      .||.|++||..            ......+.+|...|.+++|+|++  ++|++++.|+.|++||+. .......+.+...
T Consensus       192 ~d~~i~iwd~~------------~~~~~~~~~h~~~v~~~~~s~~g--~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~  257 (343)
T 2xzm_R          192 WDGRLKVWNTN------------FQIRYTFKAHESNVNHLSISPNG--KYIATGGKDKKLLIWDILNLTYPQREFDAGST  257 (343)
T ss_dssp             TTSEEEEEETT------------TEEEEEEECCSSCEEEEEECTTS--SEEEEEETTCEEEEEESSCCSSCSEEEECSSC
T ss_pred             CCCEEEEEcCC------------CceeEEEcCccccceEEEECCCC--CEEEEEcCCCeEEEEECCCCcccceeecCCCc
Confidence            99999999952            22355678899999999999998  899999999999999994 4455555667778


Q ss_pred             eeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCC--CC--cCceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEE
Q 014475          221 IDAIALDPAEHVFYAGSRDGSIYIAALNAESPST--SS--YGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVW  295 (424)
Q Consensus       221 i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~--~~--~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iw  295 (424)
                      |.+++|+|++.+++++ .|+.+++|++.+.....  ..  ..........+|...|.+++|+| +++|++|+.||.|++|
T Consensus       258 v~~v~~sp~~~~la~~-~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w  336 (343)
T 2xzm_R          258 INQIAFNPKLQWVAVG-TDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFAGFTDGVIRTF  336 (343)
T ss_dssp             EEEEEECSSSCEEEEE-ESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSCCEEEEETTSEEEEE
T ss_pred             EEEEEECCCCCEEEEE-CCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECCCCCeEEEecCCceEEEE
Confidence            9999999999887655 57789999998764321  00  00000111236888999999999 9999999999999999


Q ss_pred             eCCCCc
Q 014475          296 DPITHN  301 (424)
Q Consensus       296 d~~~~~  301 (424)
                      +++++.
T Consensus       337 ~~~~g~  342 (343)
T 2xzm_R          337 SFETSA  342 (343)
T ss_dssp             EEEEEE
T ss_pred             EEEccC
Confidence            987653

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=1.5e-40  Score=347.25  Aligned_cols=332  Identities=17%  Similarity=0.181  Sum_probs=279.7

Q ss_pred             EEeecCCCCCceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCceeee-ecCCCC
Q 014475            4 LIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVK-SLPAEP   82 (424)
Q Consensus         4 ~lat~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~-~~~~~~   82 (424)
                      +||+|+ .||+|+|||+.+++.+.++.+|   ...|.+++  |+|+++++++++.| |.|++||+.+++.... ..|...
T Consensus       629 ~l~s~~-~d~~i~vw~~~~~~~~~~~~~h---~~~v~~~~--~s~~~~~l~s~~~d-~~v~vwd~~~~~~~~~~~~~~~~  701 (1249)
T 3sfz_A          629 RIASCG-ADKTLQVFKAETGEKLLDIKAH---EDEVLCCA--FSSDDSYIATCSAD-KKVKIWDSATGKLVHTYDEHSEQ  701 (1249)
T ss_dssp             EEEEEE-TTSCEEEEETTTCCEEEEECCC---SSCEEEEE--ECTTSSEEEEEETT-SEEEEEETTTCCEEEEEECCSSC
T ss_pred             EEEEEe-CCCeEEEEECCCCCEEEEeccC---CCCEEEEE--EecCCCEEEEEeCC-CeEEEEECCCCceEEEEcCCCCc
Confidence            689999 9999999999999999988754   46789999  99999999999987 9999999998876544 568999


Q ss_pred             eeEEEECC--CCCEEEEecCCCcEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcc
Q 014475           83 IKPIAANS--HGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECES  160 (424)
Q Consensus        83 v~~~~~s~--~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~  160 (424)
                      |.+++|+|  ++.++++|+.||.|++||+.+++.+..+.+|...|++++|+|+++++++++.||.|++||+.++......
T Consensus       702 v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~  781 (1249)
T 3sfz_A          702 VNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSI  781 (1249)
T ss_dssp             EEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEE
T ss_pred             EEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCccccee
Confidence            99999999  5668999999999999999999999999999999999999999999999999999999999765321110


Q ss_pred             cc-------------------------------------------cccceE-EeecCCcCceeEEEEEEcCceeEEEEEe
Q 014475          161 QR-------------------------------------------ASHLYL-HSFTGHTLRITDIVIGYGGVSATIVSAS  196 (424)
Q Consensus       161 ~~-------------------------------------------~~~~~~-~~~~~~~~~i~~~~~~~~~~~~~l~~~~  196 (424)
                      ..                                           ...... ....+|...+.+++|+|++  ..+++++
T Consensus       782 ~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~--~~l~~~~  859 (1249)
T 3sfz_A          782 NVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYD--HLAVIAL  859 (1249)
T ss_dssp             ECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSST--TEEEEEC
T ss_pred             cccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCC--CEEEEEe
Confidence            00                                           000111 1223788999999999998  8999999


Q ss_pred             CCCcEEEEecCCCceeeeee-cCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCce---------------
Q 014475          197 EDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMH---------------  260 (424)
Q Consensus       197 ~d~~v~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~---------------  260 (424)
                      .|+.|++||+.+++.+..+. |...|.+++|+|++..+++++.||.+++|++.............               
T Consensus       860 ~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  939 (1249)
T 3sfz_A          860 SQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLA  939 (1249)
T ss_dssp             SSSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEE
T ss_pred             CCCeEEEEEcCCCceeeecCCCccceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEE
Confidence            99999999999998888877 88899999999999999999999999999986432111000000               


Q ss_pred             -------------eeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCCCcEEEEEeccCCCeeEEEEEecCceee
Q 014475          261 -------------IIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLN  326 (424)
Q Consensus       261 -------------~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~  326 (424)
                                   .......+...+.+++++| ++++++|+.||.|++||+.+++.+..+.+|.++|++++|+|++++|+
T Consensus       940 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~ 1019 (1249)
T 3sfz_A          940 VDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLI 1019 (1249)
T ss_dssp             EESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECSSSSCEE
T ss_pred             ecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCceEEEEECCCCCEEE
Confidence                         0001112356799999999 99999999999999999999999999999999999999999999999


Q ss_pred             eccCCCceeeccCCCCCC
Q 014475          327 LGSFSNPHTSSRRHGSQL  344 (424)
Q Consensus       327 ~~~~d~~i~iw~~~~~~~  344 (424)
                      +++.||.|++|++.+++.
T Consensus      1020 s~~~dg~i~vwd~~~~~~ 1037 (1249)
T 3sfz_A         1020 SSSEDSVIQVWNWQTGDY 1037 (1249)
T ss_dssp             EECSSSBEEEEETTTTEE
T ss_pred             EEcCCCEEEEEECCCCce
Confidence            999999999999987654

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=4.6e-41  Score=304.90  Aligned_cols=289  Identities=17%  Similarity=0.194  Sum_probs=243.5

Q ss_pred             CCCCceEEecceeecC----CCccccCCCCceeEEEEECCCCceeeee------cCCCCeeEEEECCC----CCEEEEec
Q 014475           34 SPPHGLACVGQRFLAS----SQLREQPSASSGSILYWSWSKPQVEVKS------LPAEPIKPIAANSH----GTYIAGGG   99 (424)
Q Consensus        34 ~~~~~v~~~~~~~~~~----~~~l~~~~~~~g~i~vwd~~~~~~~~~~------~~~~~v~~~~~s~~----~~~l~~~~   99 (424)
                      +|...|.+++  |+|+    ...+++++.+ +.|++||+.+++.....      .+...|.+++|+|+    +++|++|+
T Consensus        16 ~h~~~v~~i~--~~p~~~~~~~~~~~~~~~-~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~   92 (366)
T 3k26_A           16 DHNQPLFGVQ--FNWHSKEGDPLVFATVGS-NRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAG   92 (366)
T ss_dssp             TTCSCEEEEE--ECTTCCTTSCEEEEEEET-TEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEE
T ss_pred             CCCCceEEEE--EecccCCCCceEEEECCC-CEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEec
Confidence            4668899999  9984    4455566665 79999999866543221      25688999999998    67999999


Q ss_pred             CCCcEEEEEccCcceeeeeccccCCeEEEEEcc-CCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEee---cCCc
Q 014475          100 QSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSE-DGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSF---TGHT  175 (424)
Q Consensus       100 ~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~---~~~~  175 (424)
                      .||.|++||+.+++.+..+.+|...|.+++|+| ++++|++++.||.|++||+++           ......+   ..|.
T Consensus        93 ~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~-----------~~~~~~~~~~~~~~  161 (366)
T 3k26_A           93 SRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQT-----------DTLVAIFGGVEGHR  161 (366)
T ss_dssp             TTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTT-----------TEEEEEECSTTSCS
T ss_pred             CCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeec-----------CeEEEEeccccccc
Confidence            999999999999999999999999999999999 999999999999999999965           2334444   6899


Q ss_pred             CceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeee-----------------------------cCcceeEEEE
Q 014475          176 LRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-----------------------------FPSVIDAIAL  226 (424)
Q Consensus       176 ~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~-----------------------------~~~~i~~~~~  226 (424)
                      ..|.+++|+|++  ..|++++.||.|++||+++++....+.                             +...|.+++|
T Consensus       162 ~~v~~~~~~~~~--~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  239 (366)
T 3k26_A          162 DEVLSADYDLLG--EKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRW  239 (366)
T ss_dssp             SCEEEEEECTTS--SEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEE
T ss_pred             CceeEEEECCCC--CEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEE
Confidence            999999999988  899999999999999999876554332                             7788999999


Q ss_pred             CCCCCEEEEEeCCCcEEEEEcCCCCCCCC-----CcCceeeeeecccCcCeEEEEecC---CCEEEEeCCCCcEEEEeCC
Q 014475          227 DPAEHVFYAGSRDGSIYIAALNAESPSTS-----SYGMHIIGSLSDHSKAVTCLAYST---GDLLISGSEDGMVRVWDPI  298 (424)
Q Consensus       227 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~-----~~~~~~~~~~~~~~~~i~~~~~~~---~~~l~t~~~dg~i~iwd~~  298 (424)
                      +  ++++++++.|+.|++||++.......     ......+..+..|...|++++|+|   +++|++|+.||.|++||+.
T Consensus       240 ~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~  317 (366)
T 3k26_A          240 L--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLE  317 (366)
T ss_dssp             E--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECC
T ss_pred             c--CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECC
Confidence            8  77999999999999999988653111     112245677888999999999987   5899999999999999999


Q ss_pred             CCc----EEEEEecc--CCCeeEEEEEecCceeeeccCCCceeeccCC
Q 014475          299 THN----IVRMFRLA--KGPVNNILVVRRPLYLNLGSFSNPHTSSRRH  340 (424)
Q Consensus       299 ~~~----~~~~~~~~--~~~v~~l~~s~~~~~l~~~~~d~~i~iw~~~  340 (424)
                      +++    ....+..|  ..+|++++|+|++++|++++.||.|++||+.
T Consensus       318 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~  365 (366)
T 3k26_A          318 VEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRL  365 (366)
T ss_dssp             SSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred             CCCCccccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEec
Confidence            875    44577777  7899999999999999999999999999975

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4e-41  Score=313.09  Aligned_cols=302  Identities=12%  Similarity=0.098  Sum_probs=244.7

Q ss_pred             EEeCCCCceEEEe-eCCCCCCCceEEecceeec-CCCccccCCCCceeEEEEECCC---Cc---eeeeecCCCCeeEEEE
Q 014475           17 CWDLESGAEQLRY-KSCASPPHGLACVGQRFLA-SSQLREQPSASSGSILYWSWSK---PQ---VEVKSLPAEPIKPIAA   88 (424)
Q Consensus        17 vwd~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~-~~~~l~~~~~~~g~i~vwd~~~---~~---~~~~~~~~~~v~~~~~   88 (424)
                      .|+ .+++.+.++ .+   |...|.+++  |+| +++++++++.| |+|++||+.+   +.   ......|..+|.+++|
T Consensus        47 ~w~-~~g~~~~~~~~~---h~~~V~~~~--~s~~~~~~l~s~s~d-g~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~~~~  119 (437)
T 3gre_A           47 MGN-LRGKLIATLMEN---EPNSITSSA--VSPGETPYLITGSDQ-GVIKIWNLKEIIVGEVYSSSLTYDCSSTVTQITM  119 (437)
T ss_dssp             GGG-CCCCEEEEECTT---TTSCEEEEE--EECSSSCEEEEEETT-SEEEEEEHHHHHTTCCCSCSEEEECSSCEEEEEE
T ss_pred             ccc-ccceEEeeeccC---CCCceEEEE--ECCCCCCEEEEecCC-ceEEEeECcccccCcccceeeeccCCCCEEEEEE
Confidence            588 557888877 43   557899999  999 99999999988 9999999876   32   2334468999999999


Q ss_pred             CCCCCEEEEecCCCcEEEEEcc---Ccceeeeecc------------ccCCeEEEE--EccCCcEEEEeeCCCcEEEEeC
Q 014475           89 NSHGTYIAGGGQSGDIYMWEVA---SGRLLKKWHA------------HYRAVTCLV--FSEDGSFLISGSEDGCVRIWSL  151 (424)
Q Consensus        89 s~~~~~l~~~~~dg~v~iwd~~---~~~~~~~~~~------------~~~~i~~~~--~~~~~~~l~s~~~dg~i~iwd~  151 (424)
                      +|++++|++|+.||.|++||++   +++....+..            +...+.++.  +++++++|++++.||.|++||+
T Consensus       120 ~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~  199 (437)
T 3gre_A          120 IPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDI  199 (437)
T ss_dssp             CTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEET
T ss_pred             eCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeC
Confidence            9999999999999999999995   5544443322            455677777  5578999999999999999999


Q ss_pred             CcccchhcccccccceEEeecC--CcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeee--cCcceeEEEEC
Q 014475          152 LTVFEECESQRASHLYLHSFTG--HTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV--FPSVIDAIALD  227 (424)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~--~~~~i~~~~~~  227 (424)
                      ++           ...+..+..  |...|++++|+|++  .+|++++.||.|++||+++++++..+.  +...|.+++|+
T Consensus       200 ~~-----------~~~~~~~~~~~h~~~v~~~~~s~~~--~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~  266 (437)
T 3gre_A          200 RT-----------LERLQIIENSPRHGAVSSICIDEEC--CVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVC  266 (437)
T ss_dssp             TT-----------CCEEEEEECCGGGCCEEEEEECTTS--CEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEEC
T ss_pred             CC-----------CeeeEEEccCCCCCceEEEEECCCC--CEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEec
Confidence            65           334566666  89999999999998  899999999999999999999988774  67789999666


Q ss_pred             C----CCCEEEEEeCCCcEEEEEcCCCCCCCCCc---------Cceee------eeecc--cCcCeEEEEecCCCEEEEe
Q 014475          228 P----AEHVFYAGSRDGSIYIAALNAESPSTSSY---------GMHII------GSLSD--HSKAVTCLAYSTGDLLISG  286 (424)
Q Consensus       228 ~----~~~~l~~~~~dg~i~i~d~~~~~~~~~~~---------~~~~~------~~~~~--~~~~i~~~~~~~~~~l~t~  286 (424)
                      |    ++.++++++.||.|++||++++.......         .+.+.      ..+.+  |...|++++|+++++|++|
T Consensus       267 ~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~~~~~l~s~  346 (437)
T 3gre_A          267 QFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVSNDKILLTD  346 (437)
T ss_dssp             TTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEETTEEEEEE
T ss_pred             cccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEECCceEEEec
Confidence            4    67899999999999999998764211000         00000      01223  7788999999988899999


Q ss_pred             CCCCcEEEEeCCCCcEEEEEec-------------------------------------cCCCeeEEEEEec--Cceeee
Q 014475          287 SEDGMVRVWDPITHNIVRMFRL-------------------------------------AKGPVNNILVVRR--PLYLNL  327 (424)
Q Consensus       287 ~~dg~i~iwd~~~~~~~~~~~~-------------------------------------~~~~v~~l~~s~~--~~~l~~  327 (424)
                      +.||.|++||+.+++.+..+.+                                     |...|++++|+++  +.+|++
T Consensus       347 ~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s  426 (437)
T 3gre_A          347 EATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVA  426 (437)
T ss_dssp             GGGTEEEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEESSSSEEEEE
T ss_pred             CCCCeEEEEECCCcccceEEecccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccCCceEEEE
Confidence            9999999999999988777765                                     7889999999998  889999


Q ss_pred             ccCCCceeecc
Q 014475          328 GSFSNPHTSSR  338 (424)
Q Consensus       328 ~~~d~~i~iw~  338 (424)
                      |+.||.|++|+
T Consensus       427 ~~~dG~I~iw~  437 (437)
T 3gre_A          427 CDNSGLIGIFQ  437 (437)
T ss_dssp             EETTSCEEEEC
T ss_pred             EcCCceEEEeC
Confidence            99999999995

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=1.8e-40  Score=301.86  Aligned_cols=286  Identities=12%  Similarity=0.130  Sum_probs=241.7

Q ss_pred             CCCceEEecceeecCCCccccCCCCceeEEEEECCCCc---eeeeecCCCCeeEEEECCCCCEEEEecCCCcEEEEEccC
Q 014475           35 PPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQ---VEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVAS  111 (424)
Q Consensus        35 ~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~---~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~  111 (424)
                      |...|.+++  |+|+++++++++.+ +.|++||+.+++   ......|...|.+++|+|++++|++++.||.|++||+++
T Consensus         7 ~~~~i~~~~--~s~~~~~l~~~~~d-~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~   83 (372)
T 1k8k_C            7 LVEPISCHA--WNKDRTQIAICPNN-HEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKG   83 (372)
T ss_dssp             CSSCCCEEE--ECTTSSEEEEECSS-SEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEET
T ss_pred             cCCCeEEEE--ECCCCCEEEEEeCC-CEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCC
Confidence            456788888  99999999999887 999999998885   334456899999999999999999999999999999988


Q ss_pred             cceeee--eccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCce
Q 014475          112 GRLLKK--WHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVS  189 (424)
Q Consensus       112 ~~~~~~--~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  189 (424)
                      ++....  +..|...|.+++|+|++++|++++.||.|++||++....       ..........|...|.+++|+|++  
T Consensus        84 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~-------~~~~~~~~~~~~~~i~~~~~~~~~--  154 (372)
T 1k8k_C           84 RTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQEND-------WWVCKHIKKPIRSTVLSLDWHPNS--  154 (372)
T ss_dssp             TEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTT-------EEEEEEECTTCCSCEEEEEECTTS--
T ss_pred             CeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCc-------ceeeeeeecccCCCeeEEEEcCCC--
Confidence            875443  467899999999999999999999999999999965211       011223346789999999999988  


Q ss_pred             eEEEEEeCCCcEEEEecC------------------CCceeeeee-cCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCC
Q 014475          190 ATIVSASEDRTCKVWSLL------------------KGRLLRNIV-FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAE  250 (424)
Q Consensus       190 ~~l~~~~~d~~v~iwd~~------------------~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  250 (424)
                      .++++++.|+.|++||++                  .++.+..+. +...+.+++|+|++++|++++.|+.|++||+++.
T Consensus       155 ~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~  234 (372)
T 1k8k_C          155 VLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKK  234 (372)
T ss_dssp             SEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGT
T ss_pred             CEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCC
Confidence            899999999999999954                  567777775 7889999999999999999999999999999986


Q ss_pred             CCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCC--CcE-------------------------
Q 014475          251 SPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPIT--HNI-------------------------  302 (424)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~--~~~-------------------------  302 (424)
                               +.+..+..|..+|.+++|+| +.++++| .|+.|++|++.+  ++.                         
T Consensus       235 ---------~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  304 (372)
T 1k8k_C          235 ---------MAVATLASETLPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQN  304 (372)
T ss_dssp             ---------TEEEEEECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHH
T ss_pred             ---------ceeEEEccCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhh
Confidence                     56777888999999999999 7777777 899999999987  421                         


Q ss_pred             -------E------EEE-eccCCCeeEEEEE-ecC---ceeeeccCCCceeeccCCCC
Q 014475          303 -------V------RMF-RLAKGPVNNILVV-RRP---LYLNLGSFSNPHTSSRRHGS  342 (424)
Q Consensus       303 -------~------~~~-~~~~~~v~~l~~s-~~~---~~l~~~~~d~~i~iw~~~~~  342 (424)
                             .      ..+ .+|.++|++++|+ ++|   .+|++++.||.|++|++.+.
T Consensus       305 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~  362 (372)
T 1k8k_C          305 LDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSL  362 (372)
T ss_dssp             CCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHH
T ss_pred             cccccccccCccccccccccccCCcceeEEecCCCcceeeEEEecCCCceEEEEecCh
Confidence                   0      223 3899999999977 566   89999999999999998753

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=9.3e-40  Score=306.24  Aligned_cols=299  Identities=17%  Similarity=0.250  Sum_probs=254.1

Q ss_pred             EEEeecCCCCCceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCceeee-ecCCC
Q 014475            3 LLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVK-SLPAE   81 (424)
Q Consensus         3 ~~lat~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~-~~~~~   81 (424)
                      .+|++|+ .||+|++||+.+++.+..+.+|   ...|.+++  |++++ .+++++.| |+|++||+++++.... ..|..
T Consensus       133 ~~l~sgs-~dg~i~vwd~~~~~~~~~~~~h---~~~V~~l~--~~~~~-~l~s~s~d-g~i~vwd~~~~~~~~~~~~h~~  204 (464)
T 3v7d_B          133 NYVITGA-DDKMIRVYDSINKKFLLQLSGH---DGGVWALK--YAHGG-ILVSGSTD-RTVRVWDIKKGCCTHVFEGHNS  204 (464)
T ss_dssp             TEEEEEE-TTSCEEEEETTTTEEEEEECCC---SSCEEEEE--ECSTT-EEEEEETT-SCEEEEETTTTEEEEEECCCSS
T ss_pred             CEEEEEc-CCCcEEEEECCCCcEEEEEeCC---CcCEEEEE--EcCCC-EEEEEeCC-CCEEEEECCCCcEEEEECCCCC
Confidence            3689999 9999999999999999888754   46788888  99888 78888887 9999999998876544 45899


Q ss_pred             CeeEEEEC--CCCCEEEEecCCCcEEEEEccCcce-----------------------eeeeccccCCeEEEEEccCCcE
Q 014475           82 PIKPIAAN--SHGTYIAGGGQSGDIYMWEVASGRL-----------------------LKKWHAHYRAVTCLVFSEDGSF  136 (424)
Q Consensus        82 ~v~~~~~s--~~~~~l~~~~~dg~v~iwd~~~~~~-----------------------~~~~~~~~~~i~~~~~~~~~~~  136 (424)
                      +|.+++|+  ++++++++|+.||.|++||+.++..                       ...+.+|...+.++  ++++++
T Consensus       205 ~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~  282 (464)
T 3v7d_B          205 TVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SGHGNI  282 (464)
T ss_dssp             CEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEE--EEETTE
T ss_pred             ccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEE--cCCCCE
Confidence            99999998  5789999999999999999987653                       44567888888887  467889


Q ss_pred             EEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeee
Q 014475          137 LISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV  216 (424)
Q Consensus       137 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~  216 (424)
                      +++++.||.|++||+++           ...+..+.+|...|.+++|++++  ..+++++.||.|++||+++++++..+.
T Consensus       283 l~~~~~d~~i~vwd~~~-----------~~~~~~~~~~~~~v~~~~~~~~~--~~l~sg~~dg~i~vwd~~~~~~~~~~~  349 (464)
T 3v7d_B          283 VVSGSYDNTLIVWDVAQ-----------MKCLYILSGHTDRIYSTIYDHER--KRCISASMDTTIRIWDLENGELMYTLQ  349 (464)
T ss_dssp             EEEEETTSCEEEEETTT-----------TEEEEEECCCSSCEEEEEEETTT--TEEEEEETTSCEEEEETTTTEEEEEEC
T ss_pred             EEEEeCCCeEEEEECCC-----------CcEEEEecCCCCCEEEEEEcCCC--CEEEEEeCCCcEEEEECCCCcEEEEEe
Confidence            99999999999999954           44567788999999999999998  899999999999999999999998887


Q ss_pred             -cCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEE
Q 014475          217 -FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRV  294 (424)
Q Consensus       217 -~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~i  294 (424)
                       |...+.+++++  +.++++++.||.|++||+++..         ..... .|...+..++|++ +.++++|+ ||.|++
T Consensus       350 ~h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~---------~~~~~-~~~~~~~~~~~~~~~~~l~~~~-dg~i~i  416 (464)
T 3v7d_B          350 GHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYS---------RKFSY-HHTNLSAITTFYVSDNILVSGS-ENQFNI  416 (464)
T ss_dssp             CCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCC---------EEEEE-ECTTCCCEEEEEECSSEEEEEE-TTEEEE
T ss_pred             CCCCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCc---------eeeee-cCCCCccEEEEEeCCCEEEEec-CCeEEE
Confidence             88999999997  5899999999999999998853         12222 3666788888999 88999988 899999


Q ss_pred             EeCCCCcEEEE-EeccCCCeeEEEEEecCceeeeccCCCceeecc
Q 014475          295 WDPITHNIVRM-FRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSR  338 (424)
Q Consensus       295 wd~~~~~~~~~-~~~~~~~v~~l~~s~~~~~l~~~~~d~~i~iw~  338 (424)
                      ||+++++++.. +..|.++|.+++|+ ....+++++.||.+.+|-
T Consensus       417 wd~~~g~~~~~~~~~~~~~v~~v~~~-~~~l~~~~~~~g~~~i~~  460 (464)
T 3v7d_B          417 YNLRSGKLVHANILKDADQIWSVNFK-GKTLVAAVEKDGQSFLEI  460 (464)
T ss_dssp             EETTTCCEEESCTTTTCSEEEEEEEE-TTEEEEEEEETTEEEEEE
T ss_pred             EECCCCcEEehhhccCCCcEEEEEec-CCEEEEEEEeCCeEEEEE
Confidence            99999999986 66788999999997 445566667777666554

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=8.2e-40  Score=299.49  Aligned_cols=276  Identities=19%  Similarity=0.297  Sum_probs=226.6

Q ss_pred             EEeecCCCCCceEEEeCCCCceEEEeeCCCC---------------CCCceEEecceeecCCCccccCCCCceeEEEEEC
Q 014475            4 LIASSSVADTGIGCWDLESGAEQLRYKSCAS---------------PPHGLACVGQRFLASSQLREQPSASSGSILYWSW   68 (424)
Q Consensus         4 ~lat~~~~dg~i~vwd~~~~~~~~~~~~~~~---------------~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~   68 (424)
                      +||+++  +++++||++.+|+.+..+..+..               +...|.+++  |+|+++++++++.| +.|++||+
T Consensus        78 ~la~g~--~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~--~s~dg~~l~s~~~d-~~i~iwd~  152 (393)
T 1erj_A           78 YLATGC--NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVC--FSPDGKFLATGAED-RLIRIWDI  152 (393)
T ss_dssp             EEEEEC--BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEE--ECTTSSEEEEEETT-SCEEEEET
T ss_pred             EEEEEc--CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEE--ECCCCCEEEEEcCC-CeEEEEEC
Confidence            577776  78999999999999888865532               223488888  99999999999988 99999999


Q ss_pred             CCCceee-eecCCCCeeEEEECCCCCEEEEecCCCcEEEEEccCcceeeeeccccCCeEEEEEcc-CCcEEEEeeCCCcE
Q 014475           69 SKPQVEV-KSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSE-DGSFLISGSEDGCV  146 (424)
Q Consensus        69 ~~~~~~~-~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~s~~~dg~i  146 (424)
                      .+++... ...|...|.+++|+|++++|++++.|++|++||+++++....+. +...+.+++|+| ++++|++|+.||.|
T Consensus       153 ~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~s~d~~v  231 (393)
T 1erj_A          153 ENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLS-IEDGVTTVAVSPGDGKYIAAGSLDRAV  231 (393)
T ss_dssp             TTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSTTCCEEEEEETTSCE
T ss_pred             CCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEE-cCCCcEEEEEECCCCCEEEEEcCCCcE
Confidence            9887653 35689999999999999999999999999999999998877775 567899999999 89999999999999


Q ss_pred             EEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCc------------eeee
Q 014475          147 RIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGR------------LLRN  214 (424)
Q Consensus       147 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~------------~~~~  214 (424)
                      ++||++++.......    .......+|...|.+++|+|++  .+|++++.|+.|++||+++..            +...
T Consensus       232 ~iwd~~~~~~~~~~~----~~~~~~~~h~~~v~~v~~~~~g--~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~  305 (393)
T 1erj_A          232 RVWDSETGFLVERLD----SENESGTGHKDSVYSVVFTRDG--QSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVT  305 (393)
T ss_dssp             EEEETTTCCEEEEEC----------CCCSSCEEEEEECTTS--SEEEEEETTSEEEEEEC---------------CEEEE
T ss_pred             EEEECCCCcEEEeec----ccccCCCCCCCCEEEEEECCCC--CEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEE
Confidence            999997632211100    0011225799999999999998  899999999999999997643            2333


Q ss_pred             ee-cCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-------CCEEEEe
Q 014475          215 IV-FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-------GDLLISG  286 (424)
Q Consensus       215 ~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-------~~~l~t~  286 (424)
                      +. |...|.+++|+|++.+|++|+.|+.|++||..++         .++..+.+|...|.+++|++       +++|++|
T Consensus       306 ~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~---------~~~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sg  376 (393)
T 1erj_A          306 YIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSG---------NPLLMLQGHRNSVISVAVANGSSLGPEYNVFATG  376 (393)
T ss_dssp             EECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTC---------CEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEE
T ss_pred             EecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCC---------eEEEEECCCCCCEEEEEecCCcCcCCCCCEEEEE
Confidence            33 7788999999999999999999999999999886         55778889999999999875       5789999


Q ss_pred             CCCCcEEEEeCCCC
Q 014475          287 SEDGMVRVWDPITH  300 (424)
Q Consensus       287 ~~dg~i~iwd~~~~  300 (424)
                      +.||+|++|++...
T Consensus       377 s~Dg~i~iW~~~~~  390 (393)
T 1erj_A          377 SGDCKARIWKYKKI  390 (393)
T ss_dssp             ETTSEEEEEEEEEC
T ss_pred             CCCCcEEECccccc
Confidence            99999999997643

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=4e-40  Score=289.87  Aligned_cols=252  Identities=18%  Similarity=0.175  Sum_probs=212.3

Q ss_pred             eeecCCCCeeEEEECCCCCEEEEecCCCcEEEEEccC--cceeeeeccccCCeEEEEEcc--CCcEEEEeeCCCcEEEEe
Q 014475           75 VKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVAS--GRLLKKWHAHYRAVTCLVFSE--DGSFLISGSEDGCVRIWS  150 (424)
Q Consensus        75 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~--~~~~~~~~~~~~~i~~~~~~~--~~~~l~s~~~dg~i~iwd  150 (424)
                      ....|.+.|.+++|+|+|++||+|+.|++|+|||+..  .+.+..+.+|.++|.+++|+|  ++++|++|+.||+|++||
T Consensus         4 ~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd   83 (297)
T 2pm7_B            4 IANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWK   83 (297)
T ss_dssp             ECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEE
T ss_pred             eccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEE
Confidence            3456899999999999999999999999999999974  367788999999999999986  488999999999999999


Q ss_pred             CCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCce--eeee-ecCcceeEEEEC
Q 014475          151 LLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRL--LRNI-VFPSVIDAIALD  227 (424)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~--~~~~-~~~~~i~~~~~~  227 (424)
                      ++++         ....+..+..|...|.+++|+|+..+.+|++++.|+.|++||++++..  ...+ .|...+.+++|+
T Consensus        84 ~~~~---------~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~  154 (297)
T 2pm7_B           84 EENG---------RWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWA  154 (297)
T ss_dssp             BSSS---------CBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEEC
T ss_pred             cCCC---------ceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeec
Confidence            9652         223345667899999999999973338999999999999999987642  2223 378899999999


Q ss_pred             CC-------------CCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-C---CEEEEeCCCC
Q 014475          228 PA-------------EHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-G---DLLISGSEDG  290 (424)
Q Consensus       228 ~~-------------~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~---~~l~t~~~dg  290 (424)
                      |+             +++|++|+.|+.|++||++.....     ......+.+|...|.+++|+| +   .+|++++.|+
T Consensus       155 p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~-----~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~  229 (297)
T 2pm7_B          155 PATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQT-----YVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDR  229 (297)
T ss_dssp             CCC------------CCEEEEEETTSCEEEEEEETTTTE-----EEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTS
T ss_pred             CCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCce-----EEEEEEecCCCCceEEEEECCCCCCceEEEEEECCC
Confidence            97             579999999999999999875311     124567889999999999999 4   7999999999


Q ss_pred             cEEEEeCCCCc---EEEEE--eccCCCeeEEEEEecCceeeeccCCCceeeccCC
Q 014475          291 MVRVWDPITHN---IVRMF--RLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRH  340 (424)
Q Consensus       291 ~i~iwd~~~~~---~~~~~--~~~~~~v~~l~~s~~~~~l~~~~~d~~i~iw~~~  340 (424)
                      +|++||+++..   ....+  ..|...|.+++|+|++++|++++.|+.|++|+..
T Consensus       230 ~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~  284 (297)
T 2pm7_B          230 TCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN  284 (297)
T ss_dssp             CEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEEC
T ss_pred             cEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEEC
Confidence            99999998743   22233  4678899999999999999999999999999976

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=2.3e-39  Score=287.41  Aligned_cols=267  Identities=24%  Similarity=0.367  Sum_probs=232.1

Q ss_pred             EEEeecCCCCCceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCceee-eecCCC
Q 014475            3 LLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEV-KSLPAE   81 (424)
Q Consensus         3 ~~lat~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~-~~~~~~   81 (424)
                      .+||+++ .||.|+|||+.+++....+..|   ...|.+++  |+|+++++++++.| |.|++||+.+++... ...|..
T Consensus        36 ~~l~s~~-~dg~i~iw~~~~~~~~~~~~~h---~~~v~~~~--~~~~~~~l~s~~~d-~~i~vwd~~~~~~~~~~~~~~~  108 (312)
T 4ery_A           36 EWLASSS-ADKLIKIWGAYDGKFEKTISGH---KLGISDVA--WSSDSNLLVSASDD-KTLKIWDVSSGKCLKTLKGHSN  108 (312)
T ss_dssp             SEEEEEE-TTSCEEEEETTTCCEEEEECCC---SSCEEEEE--ECTTSSEEEEEETT-SEEEEEETTTCCEEEEEECCSS
T ss_pred             CEEEEee-CCCeEEEEeCCCcccchhhccC---CCceEEEE--EcCCCCEEEEECCC-CEEEEEECCCCcEEEEEcCCCC
Confidence            3689999 9999999999999998888654   46788888  99999999999998 999999999887653 356889


Q ss_pred             CeeEEEECCCCCEEEEecCCCcEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhccc
Q 014475           82 PIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQ  161 (424)
Q Consensus        82 ~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~  161 (424)
                      .|.+++|+|++++|++|+.||.|++||+++++.+..+..|..+|.+++|+|++++|++++.||.|++||++++       
T Consensus       109 ~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~-------  181 (312)
T 4ery_A          109 YVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG-------  181 (312)
T ss_dssp             CEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTC-------
T ss_pred             CEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCC-------
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999652       


Q ss_pred             ccccceEEe-ecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeee-cCcc---eeEEEECCCCCEEEEE
Q 014475          162 RASHLYLHS-FTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-FPSV---IDAIALDPAEHVFYAG  236 (424)
Q Consensus       162 ~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~-~~~~---i~~~~~~~~~~~l~~~  236 (424)
                          ..+.. ...+...+..++|+|++  +++++++.|+.|++||+++++.+..+. +...   +......+++.++++|
T Consensus       182 ----~~~~~~~~~~~~~~~~~~~~~~~--~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg  255 (312)
T 4ery_A          182 ----QCLKTLIDDDNPPVSFVKFSPNG--KYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSG  255 (312)
T ss_dssp             ----CEEEEECCSSCCCEEEEEECTTS--SEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSSCEEEEC
T ss_pred             ----ceeeEEeccCCCceEEEEECCCC--CEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCCcEEEEE
Confidence                22233 34567789999999998  899999999999999999999888776 3332   2333345688999999


Q ss_pred             eCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeC--CCCcEEEEeCC
Q 014475          237 SRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGS--EDGMVRVWDPI  298 (424)
Q Consensus       237 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~--~dg~i~iwd~~  298 (424)
                      +.||.|++||+++.         +.+..+.+|...|.+++|+| ++++++++  .|+.|++|+..
T Consensus       256 ~~dg~i~vwd~~~~---------~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~d  311 (312)
T 4ery_A          256 SEDNLVYIWNLQTK---------EIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD  311 (312)
T ss_dssp             CTTSCEEEEETTTC---------CEEEEECCCSSCEEEEEECSSSSEEEEEECTTTCCEEEEECC
T ss_pred             CCCCEEEEEECCCc---------hhhhhhhccCCcEEEEeecCcCCceEEEEccCCccEEEecCC
Confidence            99999999999886         56778899999999999999 99999886  69999999864

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=100.00  E-value=1.4e-40  Score=306.26  Aligned_cols=314  Identities=11%  Similarity=0.118  Sum_probs=253.0

Q ss_pred             CCCceEEEeCCCCceEEEeeCCCCCCCceEEecceeec-CCCccccCCCCceeEEEEECCCCceeeee------------
Q 014475           11 ADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLA-SSQLREQPSASSGSILYWSWSKPQVEVKS------------   77 (424)
Q Consensus        11 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~l~~~~~~~g~i~vwd~~~~~~~~~~------------   77 (424)
                      .++.+++|+++.++....+..   |...|.+++  |+| +++++++++.+ |.|++||+.+.+.....            
T Consensus        21 ~~~~~~v~~~~~~~~~~~~~~---h~~~v~~~~--~s~~~~~~l~~~~~d-g~i~iw~~~~~~~~~~~~~~~~~~~~~~~   94 (408)
T 4a11_B           21 AESTRRVLGLELNKDRDVERI---HGGGINTLD--IEPVEGRYMLSGGSD-GVIVLYDLENSSRQSYYTCKAVCSIGRDH   94 (408)
T ss_dssp             HHHHHHHHTEEECTTEEECCC---CSSCEEEEE--ECTTTCCEEEEEETT-SCEEEEECCCCSSSSCEEECEEEEECTTC
T ss_pred             ccCcceeeccccCcceeeeec---cCCcEEEEE--EecCCCCEEEEEcCC-CeEEEEECCCCcccceEeccccccccccc
Confidence            356788999988888877765   557899999  999 99999999998 99999999977654332            


Q ss_pred             --cCCCCeeEEEECC-CCCEEEEecCCCcEEEEEccCcceeeeeccccCCeEEEEEcc---CCcEEEEeeCCCcEEEEeC
Q 014475           78 --LPAEPIKPIAANS-HGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSE---DGSFLISGSEDGCVRIWSL  151 (424)
Q Consensus        78 --~~~~~v~~~~~s~-~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~---~~~~l~s~~~dg~i~iwd~  151 (424)
                        .|...|.+++|+| ++.+|++++.||.|++||+.+++....+. +...+.++.|+|   ++.++++++.||.|++||+
T Consensus        95 ~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~  173 (408)
T 4a11_B           95 PDVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDL  173 (408)
T ss_dssp             TTCCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEES
T ss_pred             cccCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeC
Confidence              3889999999999 78899999999999999999998887776 778899999998   4459999999999999999


Q ss_pred             CcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCc-eeeee---------------
Q 014475          152 LTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGR-LLRNI---------------  215 (424)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~-~~~~~---------------  215 (424)
                      ++           ......+..|...|.+++|+|++. ..+++++.||.|++||++++. ....+               
T Consensus       174 ~~-----------~~~~~~~~~~~~~v~~~~~~~~~~-~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (408)
T 4a11_B          174 KS-----------GSCSHILQGHRQEILAVSWSPRYD-YILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESAN  241 (408)
T ss_dssp             SS-----------SCCCEEECCCCSCEEEEEECSSCT-TEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSS
T ss_pred             CC-----------cceeeeecCCCCcEEEEEECCCCC-cEEEEEcCCCcEEEEECCCCCcccccccccccccceeecccc
Confidence            65           334566788999999999999983 369999999999999998765 22222               


Q ss_pred             -ecCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeE-EEEecCCCEEEEeCCCCcEE
Q 014475          216 -VFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVT-CLAYSTGDLLISGSEDGMVR  293 (424)
Q Consensus       216 -~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~~~~~~l~t~~~dg~i~  293 (424)
                       .+...|.+++|+|++++|++++.||.|++||++++.........    ........+. .....++..+++++.|+.|+
T Consensus       242 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  317 (408)
T 4a11_B          242 TAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGK----VCNNSKKGLKFTVSCGCSSEFVFVPYGSTIA  317 (408)
T ss_dssp             CSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCC----CCCCCSSCCCCEECCSSSSCEEEEEETTEEE
T ss_pred             ccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCccceecccc----ccccccccceeEEecCCCceEEEEecCCEEE
Confidence             36778999999999999999999999999999987532211100    0011111222 22222367777788899999


Q ss_pred             EEeCCCCcEEEEEeccCCCeeEEEEEecCceeeeccCCCceeeccCCCCCCCCC
Q 014475          294 VWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGSQLPPP  347 (424)
Q Consensus       294 iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~  347 (424)
                      +||+.+++++..+.+|.++|++++|+|++++|++++.||.|++|++.+.++...
T Consensus       318 v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~  371 (408)
T 4a11_B          318 VYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLYEPVPD  371 (408)
T ss_dssp             EEETTTCCEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEEECC------
T ss_pred             EEECcCCcceeeeccCCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCCCccCC
Confidence            999999999999999999999999999999999999999999999998766543

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=9.7e-41  Score=309.93  Aligned_cols=284  Identities=13%  Similarity=0.107  Sum_probs=222.1

Q ss_pred             CCCceEEecceeecC-CCccccCCCCceeEEEEECCCCceee---eecCCCCeeEEEECC-CCCEEEEecCCCcEEEEEc
Q 014475           35 PPHGLACVGQRFLAS-SQLREQPSASSGSILYWSWSKPQVEV---KSLPAEPIKPIAANS-HGTYIAGGGQSGDIYMWEV  109 (424)
Q Consensus        35 ~~~~v~~~~~~~~~~-~~~l~~~~~~~g~i~vwd~~~~~~~~---~~~~~~~v~~~~~s~-~~~~l~~~~~dg~v~iwd~  109 (424)
                      +...|++++  |+|. +++||+|+.| |.|+|||+.+++...   ...|.++|++++|+| ++++|++|+.||+|++||+
T Consensus       118 ~~~~V~~l~--~~P~~~~~lasGs~d-g~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~  194 (435)
T 4e54_B          118 FDRRATSLA--WHPTHPSTVAVGSKG-GDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDF  194 (435)
T ss_dssp             CSSCEEEEE--ECSSCTTCEEEEETT-SCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEET
T ss_pred             CCCCEEEEE--EeCCCCCEEEEEeCC-CEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeec
Confidence            456799999  9995 5677788877 999999998765432   245899999999998 7899999999999999999


Q ss_pred             cCcceeeeec--cccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcC
Q 014475          110 ASGRLLKKWH--AHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGG  187 (424)
Q Consensus       110 ~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  187 (424)
                      +++.......  .+...+.+++|+|++++|++|+.||.|++||++.            ..+..+.+|...|.+++|+|++
T Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~------------~~~~~~~~h~~~v~~v~~~p~~  262 (435)
T 4e54_B          195 KGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDG------------KELWNLRMHKKKVTHVALNPCC  262 (435)
T ss_dssp             TSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSS------------CBCCCSBCCSSCEEEEEECTTC
T ss_pred             cCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCc------------ceeEEEecccceEEeeeecCCC
Confidence            8765433333  3445678999999999999999999999999853            1345678899999999999987


Q ss_pred             ceeEEEEEeCCCcEEEEecCCCceeeee----ecCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeee
Q 014475          188 VSATIVSASEDRTCKVWSLLKGRLLRNI----VFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIG  263 (424)
Q Consensus       188 ~~~~l~~~~~d~~v~iwd~~~~~~~~~~----~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~  263 (424)
                      . .++++++.|+.|++||+++.+....+    .|...|.+++|+|++.+|++++.||.|++||++....         ..
T Consensus       263 ~-~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~---------~~  332 (435)
T 4e54_B          263 D-WFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDC---------PL  332 (435)
T ss_dssp             S-SEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSS---------EE
T ss_pred             c-eEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCcc---------ce
Confidence            4 58889999999999999887654433    3788999999999999999999999999999988642         22


Q ss_pred             eecccC------cCeEEEEecC-CCEEEEeC------------CCCcEEEEeCCCCcEEEEEe-ccCCCeeEE-EEEecC
Q 014475          264 SLSDHS------KAVTCLAYST-GDLLISGS------------EDGMVRVWDPITHNIVRMFR-LAKGPVNNI-LVVRRP  322 (424)
Q Consensus       264 ~~~~~~------~~i~~~~~~~-~~~l~t~~------------~dg~i~iwd~~~~~~~~~~~-~~~~~v~~l-~~s~~~  322 (424)
                      .+..|.      ..+....|+| +..+++++            .++.|++||..+++.+..+. +|...|.++ +|+|+|
T Consensus       333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg  412 (435)
T 4e54_B          333 GLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMG  412 (435)
T ss_dssp             EECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTS
T ss_pred             EEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCC
Confidence            222221      1122334555 44444442            34679999999999998875 677889887 699999


Q ss_pred             ceeeeccCCCceeeccCCCCCC
Q 014475          323 LYLNLGSFSNPHTSSRRHGSQL  344 (424)
Q Consensus       323 ~~l~~~~~d~~i~iw~~~~~~~  344 (424)
                      ++|++|+ |+.|++|+++.+++
T Consensus       413 ~~lasg~-d~~i~iW~~~~gk~  433 (435)
T 4e54_B          413 DTLASAM-GYHILIWSQQEART  433 (435)
T ss_dssp             SCEEEEC-SSEEEECCCC----
T ss_pred             CEEEEEc-CCcEEEEECCcCee
Confidence            9999876 78999999987654

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.3e-40  Score=333.32  Aligned_cols=317  Identities=13%  Similarity=0.134  Sum_probs=241.7

Q ss_pred             EEeecCCCCCceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCceeeeecCCCCe
Q 014475            4 LIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSLPAEPI   83 (424)
Q Consensus         4 ~lat~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~~~~~~~v   83 (424)
                      +||+|+ .||+|+|||..+++....+.    +...|.+++  |+| +++|++++.| ++|++||+.+++......+...|
T Consensus        31 ~lAsgs-~Dg~I~lw~~~~~~~~~~~~----~~~~V~~l~--fsp-g~~L~S~s~D-~~v~lWd~~~~~~~~~~~~~~~V  101 (902)
T 2oaj_A           31 LLAIAT-VTGEVHIYGQQQVEVVIKLE----DRSAIKEMR--FVK-GIYLVVINAK-DTVYVLSLYSQKVLTTVFVPGKI  101 (902)
T ss_dssp             EEEEEE-TTSEEEEECSTTCEEEEECS----SCCCEEEEE--EET-TTEEEEEETT-CEEEEEETTTCSEEEEEECSSCE
T ss_pred             EEEEEe-CCCEEEEEeCCCcEEEEEcC----CCCCEEEEE--EcC-CCEEEEEECc-CeEEEEECCCCcEEEEEcCCCCE
Confidence            789999 99999999998877665542    346799999  999 8889999887 99999999988876666678899


Q ss_pred             eEEEECCCCCEEEEecCCCcEEEEEccCccee-----------eeeccccCCeEEEEEccC-CcEEEEeeCCCcEEEEeC
Q 014475           84 KPIAANSHGTYIAGGGQSGDIYMWEVASGRLL-----------KKWHAHYRAVTCLVFSED-GSFLISGSEDGCVRIWSL  151 (424)
Q Consensus        84 ~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~-----------~~~~~~~~~i~~~~~~~~-~~~l~s~~~dg~i~iwd~  151 (424)
                      ++++|+|++++|++|+.||.|++||+++++..           ..+.+|.+.|.+++|+|+ +..+++|+.||.| +||+
T Consensus       102 ~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~  180 (902)
T 2oaj_A          102 TSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSL  180 (902)
T ss_dssp             EEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEET
T ss_pred             EEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEEC
Confidence            99999999999999999999999999988653           334679999999999995 5789999999999 9999


Q ss_pred             CcccchhcccccccceEEeec------------------CCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceee
Q 014475          152 LTVFEECESQRASHLYLHSFT------------------GHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLR  213 (424)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~------------------~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~  213 (424)
                      +++.           ....+.                  .|...|++++|+|++  .+|++++.||.|++||+++++++.
T Consensus       181 ~~~~-----------~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg--~~lasgs~Dg~i~lWd~~~g~~~~  247 (902)
T 2oaj_A          181 VENE-----------IKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNS--LHIITIHEDNSLVFWDANSGHMIM  247 (902)
T ss_dssp             TTTE-----------EEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTS--SEEEEEETTCCEEEEETTTCCEEE
T ss_pred             CCCc-----------eEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCC--CEEEEEECCCeEEEEECCCCcEEE
Confidence            7632           222333                  346789999999998  899999999999999999988765


Q ss_pred             e--ee-----------------cCcceeEEEEC----CCC-CEEEEEeCC-----CcEEEEEcC----------------
Q 014475          214 N--IV-----------------FPSVIDAIALD----PAE-HVFYAGSRD-----GSIYIAALN----------------  248 (424)
Q Consensus       214 ~--~~-----------------~~~~i~~~~~~----~~~-~~l~~~~~d-----g~i~i~d~~----------------  248 (424)
                      .  +.                 +...|.+++|+    |++ .++++|+.+     ..+.+|++.                
T Consensus       248 ~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~  327 (902)
T 2oaj_A          248 ARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNY  327 (902)
T ss_dssp             EECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHH
T ss_pred             EEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccchhhhhhh
Confidence            3  21                 13468899994    443 456666544     256666631                


Q ss_pred             -------------------------------------------------------CCCCCCCC-----------cC----
Q 014475          249 -------------------------------------------------------AESPSTSS-----------YG----  258 (424)
Q Consensus       249 -------------------------------------------------------~~~~~~~~-----------~~----  258 (424)
                                                                             ++......           ..    
T Consensus       328 ~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~  407 (902)
T 2oaj_A          328 YANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTS  407 (902)
T ss_dssp             HHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEE
T ss_pred             hcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCCCeeEE
Confidence                                                                   11000000           00    


Q ss_pred             -----------------ceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCCCcEE----EEE--e-----cc
Q 014475          259 -----------------MHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIV----RMF--R-----LA  309 (424)
Q Consensus       259 -----------------~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~~----~~~--~-----~~  309 (424)
                                       ......+.+|...+.+++|+| +++|++|+.|++|++||+.++...    ...  .     +|
T Consensus       408 ~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h  487 (902)
T 2oaj_A          408 MAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAK  487 (902)
T ss_dssp             EEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSS
T ss_pred             EEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEEEECCCccccCCceEEeechhhcCCCC
Confidence                             000001223334444555678 889999999999999999887421    111  1     78


Q ss_pred             CCCeeEEEEEecCceeeeccCCCceeeccCCCCC
Q 014475          310 KGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGSQ  343 (424)
Q Consensus       310 ~~~v~~l~~s~~~~~l~~~~~d~~i~iw~~~~~~  343 (424)
                      ...|++++|+||+++||+|+.||+|++|++.+.+
T Consensus       488 ~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~  521 (902)
T 2oaj_A          488 ELAVDKISFAAETLELAVSIETGDVVLFKYEVNQ  521 (902)
T ss_dssp             SCCEEEEEEETTTTEEEEEETTSCEEEEEEEECC
T ss_pred             CCceeEEEecCCCCeEEEEecCcEEEEEEecCcc
Confidence            8999999999999999999999999999998764

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=1.1e-39  Score=299.68  Aligned_cols=277  Identities=15%  Similarity=0.211  Sum_probs=235.5

Q ss_pred             eecCCCccccCCCCceeEEEEECCCCceeeee--cCCCCeeEEEECCCCCEEEEecCCCcEEEEEccCcceeeeeccccC
Q 014475           46 FLASSQLREQPSASSGSILYWSWSKPQVEVKS--LPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYR  123 (424)
Q Consensus        46 ~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~  123 (424)
                      +.+++..+++++.+ |.|++||..+++.....  .|...|.+++|+|++++|++|+.||.|++||+.+++.+..+.+|..
T Consensus        99 ~~~s~~~l~~~~~d-~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~  177 (401)
T 4aez_A           99 LDWSNLNVVAVALE-RNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQA  177 (401)
T ss_dssp             EEECTTSEEEEEET-TEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSS
T ss_pred             EeecCCCEEEEECC-CeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEecCCCC
Confidence            44455678888877 99999999988765433  3688999999999999999999999999999999999999999999


Q ss_pred             CeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEE
Q 014475          124 AVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKV  203 (424)
Q Consensus       124 ~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~i  203 (424)
                      .|.+++|+  ++.+++++.||.|++||++.          .......+.+|...|.+++|+|++  .+|++++.|+.|++
T Consensus       178 ~v~~~~~~--~~~l~~~~~dg~i~i~d~~~----------~~~~~~~~~~~~~~v~~~~~~~~~--~~l~s~~~d~~v~i  243 (401)
T 4aez_A          178 RVGCLSWN--RHVLSSGSRSGAIHHHDVRI----------ANHQIGTLQGHSSEVCGLAWRSDG--LQLASGGNDNVVQI  243 (401)
T ss_dssp             CEEEEEEE--TTEEEEEETTSEEEEEETTS----------SSCEEEEEECCSSCEEEEEECTTS--SEEEEEETTSCEEE
T ss_pred             ceEEEEEC--CCEEEEEcCCCCEEEEeccc----------CcceeeEEcCCCCCeeEEEEcCCC--CEEEEEeCCCeEEE
Confidence            99999995  67999999999999999964          234566788899999999999988  89999999999999


Q ss_pred             EecCCCceeeeee-cCcceeEEEECCCCC-EEEEEe--CCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC
Q 014475          204 WSLLKGRLLRNIV-FPSVIDAIALDPAEH-VFYAGS--RDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST  279 (424)
Q Consensus       204 wd~~~~~~~~~~~-~~~~i~~~~~~~~~~-~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  279 (424)
                      ||+++++....+. +...|.+++|+|++. ++++++  .|+.|++||++++         ..+..+ .+...|.+++|+|
T Consensus       244 wd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~---------~~~~~~-~~~~~v~~~~~s~  313 (401)
T 4aez_A          244 WDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATG---------ARVNTV-DAGSQVTSLIWSP  313 (401)
T ss_dssp             EETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTC---------CEEEEE-ECSSCEEEEEECS
T ss_pred             ccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCC---------CEEEEE-eCCCcEEEEEECC
Confidence            9999998888776 889999999999764 555554  7999999999986         344444 3678899999999


Q ss_pred             -CCEEEE--eCCCCcEEEEeCCCCcEEE--EEeccCCCeeEEEEEecCceeeeccCCCceeeccCCCCCCCCC
Q 014475          280 -GDLLIS--GSEDGMVRVWDPITHNIVR--MFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGSQLPPP  347 (424)
Q Consensus       280 -~~~l~t--~~~dg~i~iwd~~~~~~~~--~~~~~~~~v~~l~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~  347 (424)
                       +.++++  |+.||.|++||+.+++...  .+.+|.+.|.+++|+|++++|++++.||.|++|++.+++....
T Consensus       314 ~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~~~~~~  386 (401)
T 4aez_A          314 HSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYDGDHVKR  386 (401)
T ss_dssp             SSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECTTSEEEEEECCC------
T ss_pred             CCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCccccc
Confidence             899988  5589999999999866554  4678999999999999999999999999999999987765443

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=3.5e-41  Score=307.23  Aligned_cols=284  Identities=11%  Similarity=0.051  Sum_probs=225.0

Q ss_pred             CceEEecceeecCCCccccCCCCceeEEEEECCCC--cee-eeecCCCCeeEEEECCCCCEEEEecCCCcEEEEEccCcc
Q 014475           37 HGLACVGQRFLASSQLREQPSASSGSILYWSWSKP--QVE-VKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGR  113 (424)
Q Consensus        37 ~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~--~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~  113 (424)
                      ..|.+++  |+|+++++++++.+ |.|++||+.++  +.. ....|..+|.+++|+|++++|++++.||.|++||+.+++
T Consensus        12 ~~v~~~~--~s~~g~~l~~~~~d-~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~   88 (377)
T 3dwl_C           12 KPSYEHA--FNSQRTEFVTTTAT-NQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDG   88 (377)
T ss_dssp             SCCSCCE--ECSSSSEEECCCSS-SCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC------
T ss_pred             CcEEEEE--ECCCCCEEEEecCC-CEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCC
Confidence            5677888  99999999999887 99999999876  332 334688999999999999999999999999999999887


Q ss_pred             ---eeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecC-CcCceeEEEEEEcCce
Q 014475          114 ---LLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTG-HTLRITDIVIGYGGVS  189 (424)
Q Consensus       114 ---~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~  189 (424)
                         ....+..|...|.+++|+|++++|++++.|+.|++||+++..        .......+.. |...|.+++|+|++  
T Consensus        89 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~--------~~~~~~~~~~~h~~~v~~~~~~~~~--  158 (377)
T 3dwl_C           89 TWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQEN--------DWWVSKHLKRPLRSTILSLDWHPNN--  158 (377)
T ss_dssp             CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-------------CCCCEEECSSCCSCEEEEEECTTS--
T ss_pred             ceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcc--------cceeeeEeecccCCCeEEEEEcCCC--
Confidence               667778899999999999999999999999999999997631        1113445666 99999999999988  


Q ss_pred             eEEEEEeCCCcEEEEecC------------------CCceeeeeecCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCC
Q 014475          190 ATIVSASEDRTCKVWSLL------------------KGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAES  251 (424)
Q Consensus       190 ~~l~~~~~d~~v~iwd~~------------------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  251 (424)
                      .+|++++.|+.|++||++                  .++++..+.|...|.+++|+|++++|++++.||.|++||++++.
T Consensus       159 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~  238 (377)
T 3dwl_C          159 VLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEYPSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPE  238 (377)
T ss_dssp             SEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECCCCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTT
T ss_pred             CEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcccCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCC
Confidence            899999999999999985                  34455555678889999999999999999999999999999874


Q ss_pred             CCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCCCc-----------------------------
Q 014475          252 PSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHN-----------------------------  301 (424)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~-----------------------------  301 (424)
                      ..     ...+..+.+|...|.+++|+| +.+|++|+.++.+ +|+.....                             
T Consensus       239 ~~-----~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  312 (377)
T 3dwl_C          239 QP-----PRALITVKLSQLPLRSLLWANESAIVAAGYNYSPI-LLQGNESGWAHTRDLDAGTSKTSFTHTGNTGEGREEE  312 (377)
T ss_dssp             SC-----EEECCCEECSSSCEEEEEEEETTEEEEEESSSSEE-EECCCC---CCSBCCCSCCCCCCBSSSSSBCCCCCC-
T ss_pred             Cc-----ceeeEeecCCCCceEEEEEcCCCCEEEEEcCCcEE-EEEeCCCceEEEeeecccccccccccccccccccccc
Confidence            21     123667888999999999999 8899888877665 66654211                             


Q ss_pred             -EE------EEEe----------------ccCCCeeEEEEEecCc----eeeeccCCCceeeccC
Q 014475          302 -IV------RMFR----------------LAKGPVNNILVVRRPL----YLNLGSFSNPHTSSRR  339 (424)
Q Consensus       302 -~~------~~~~----------------~~~~~v~~l~~s~~~~----~l~~~~~d~~i~iw~~  339 (424)
                       .+      ..+.                .|.+.|+++.+.+...    .|++++.||.|++|++
T Consensus       313 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWdl  377 (377)
T 3dwl_C          313 GPVSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVVLWTL  377 (377)
T ss_dssp             ------------------------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTSEEEEECC
T ss_pred             cccccccccccccchhhccccccccccCccccceeEEEeccCCCCCceEEEEeecCCCcEEEecC
Confidence             00      1111                2899999999876543    5999999999999985

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=2.6e-39  Score=299.02  Aligned_cols=278  Identities=19%  Similarity=0.277  Sum_probs=234.0

Q ss_pred             eEEecceeecCCCccccCCCCceeEEEEECCCCceeee---ecCCCCeeEEEECCCCCEEEEecCCCcEEEEEccCccee
Q 014475           39 LACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVK---SLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLL  115 (424)
Q Consensus        39 v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~---~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~  115 (424)
                      +..++  |+++ +.|+++. | ++|+|||..+++....   ..|...|++++|+|+|++|++|+.||.|++||+++++.+
T Consensus       108 ~~~l~--wS~~-n~lAvgl-d-~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~  182 (420)
T 4gga_A          108 LNLVD--WSSG-NVLAVAL-D-NSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRL  182 (420)
T ss_dssp             CBCEE--ECTT-SEEEEEE-T-TEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEE
T ss_pred             ceeEE--ECCC-CEEEEEe-C-CEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEE
Confidence            34566  8865 4666654 5 9999999999876533   246778999999999999999999999999999999999


Q ss_pred             eeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEE
Q 014475          116 KKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSA  195 (424)
Q Consensus       116 ~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~  195 (424)
                      ..+.+|...+.++.++  +..+++|+.|+.+++||...          ....+..+.+|...+..+.+.+++  ..++++
T Consensus       183 ~~~~~h~~~v~~~s~~--~~~l~sgs~d~~i~~~d~~~----------~~~~~~~~~~h~~~~~~~~~~~~g--~~l~s~  248 (420)
T 4gga_A          183 RNMTSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRV----------AEHHVATLSGHSQEVCGLRWAPDG--RHLASG  248 (420)
T ss_dssp             EEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTS----------SSCEEEEEECCSSCEEEEEECTTS--SEEEEE
T ss_pred             EEEeCCCCceEEEeeC--CCEEEEEeCCCceeEeeecc----------cceeeEEecccccceeeeeecCCC--Ceeeee
Confidence            9999999999998885  67999999999999999865          334567788999999999999998  899999


Q ss_pred             eCCCcEEEEecCCCcee----eee-ecCcceeEEEECCCC-CEEEE--EeCCCcEEEEEcCCCCCCCCCcCceeeeeecc
Q 014475          196 SEDRTCKVWSLLKGRLL----RNI-VFPSVIDAIALDPAE-HVFYA--GSRDGSIYIAALNAESPSTSSYGMHIIGSLSD  267 (424)
Q Consensus       196 ~~d~~v~iwd~~~~~~~----~~~-~~~~~i~~~~~~~~~-~~l~~--~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~  267 (424)
                      +.|+.+++||..+++..    ... .+...|.+++|+|.+ ..+++  |+.|+.|++||+.++         .....+. 
T Consensus       249 ~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~---------~~~~~~~-  318 (420)
T 4gga_A          249 GNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSG---------ACLSAVD-  318 (420)
T ss_dssp             ETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTT---------EEEEEEE-
T ss_pred             eccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCcc---------ccceeec-
Confidence            99999999999876532    222 377899999999965 45554  357999999999986         4455554 


Q ss_pred             cCcCeEEEEecC-CCEEEEeC--CCCcEEEEeCCCCcEEEEEeccCCCeeEEEEEecCceeeeccCCCceeeccCCCCCC
Q 014475          268 HSKAVTCLAYST-GDLLISGS--EDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGSQL  344 (424)
Q Consensus       268 ~~~~i~~~~~~~-~~~l~t~~--~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~d~~i~iw~~~~~~~  344 (424)
                      +...+.++.|+| ++.+++++  .|+.|+|||+.+++++.++.+|.++|++++|+|+|++|++|+.|++|++|++....+
T Consensus       319 ~~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv~~~~~  398 (420)
T 4gga_A          319 AHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFELDP  398 (420)
T ss_dssp             CSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCSSC
T ss_pred             cccceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCCCc
Confidence            446788999999 77777654  799999999999999999999999999999999999999999999999999976544


Q ss_pred             C
Q 014475          345 P  345 (424)
Q Consensus       345 ~  345 (424)
                      .
T Consensus       399 ~  399 (420)
T 4gga_A          399 A  399 (420)
T ss_dssp             C
T ss_pred             c
Confidence            3

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=1.9e-39  Score=314.84  Aligned_cols=300  Identities=17%  Similarity=0.234  Sum_probs=261.8

Q ss_pred             EEeecCCCCCceEEEeCCCC----ceEEEeeCCCCCCCc-eEEecceeec--CCCccccCCCCceeEEEEECCCC-----
Q 014475            4 LIASSSVADTGIGCWDLESG----AEQLRYKSCASPPHG-LACVGQRFLA--SSQLREQPSASSGSILYWSWSKP-----   71 (424)
Q Consensus         4 ~lat~~~~dg~i~vwd~~~~----~~~~~~~~~~~~~~~-v~~~~~~~~~--~~~~l~~~~~~~g~i~vwd~~~~-----   71 (424)
                      +||+++  ++.|+|||++++    +....+.+|   ... |.+++  |+|  +++++++++.+ |.|++||+.++     
T Consensus        32 ~l~~~~--~~~v~v~~~~~~~~~~~~~~~~~~h---~~~~v~~~~--~sp~~~~~~l~s~~~d-g~v~vw~~~~~~~~~~  103 (615)
T 1pgu_A           32 AIAYPC--GKSAFVRCLDDGDSKVPPVVQFTGH---GSSVVTTVK--FSPIKGSQYLCSGDES-GKVIVWGWTFDKESNS  103 (615)
T ss_dssp             EEEEEE--TTEEEEEECCSSCCSSCSEEEECTT---TTSCEEEEE--ECSSTTCCEEEEEETT-SEEEEEEEEEEGGGTE
T ss_pred             EEEEec--CCeEEEEECCCCCCccccceEEecC---CCceEEEEE--ECcCCCCCEEEEecCC-CEEEEEeCCCCccccc
Confidence            566766  789999999999    888888765   466 89999  999  99999999997 99999999644     


Q ss_pred             ---cee-eeecCCCCeeEEEECCCCCEEEEecCC----CcEEEEEccCcceeeeeccccCCeEEEEEccCCc-EEEEeeC
Q 014475           72 ---QVE-VKSLPAEPIKPIAANSHGTYIAGGGQS----GDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGS-FLISGSE  142 (424)
Q Consensus        72 ---~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~d----g~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~s~~~  142 (424)
                         +.. ....|..+|.+++|+|++++|++++.+    +.|++||  .++.+..+.+|...|.+++|+|+++ .+++++.
T Consensus       104 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~  181 (615)
T 1pgu_A          104 VEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWD--SGNSLGEVSGHSQRINACHLKQSRPMRSMTVGD  181 (615)
T ss_dssp             EEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETT--TCCEEEECCSCSSCEEEEEECSSSSCEEEEEET
T ss_pred             ccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEE--CCCcceeeecCCccEEEEEECCCCCcEEEEEeC
Confidence               222 234578999999999999999999887    6788887  6778888999999999999999998 8999999


Q ss_pred             CCcEEEEeCCcccchhcccccccceEEeecCCcC---ceeEEEEEEc-CceeEEEEEeCCCcEEEEecCCCceeeee---
Q 014475          143 DGCVRIWSLLTVFEECESQRASHLYLHSFTGHTL---RITDIVIGYG-GVSATIVSASEDRTCKVWSLLKGRLLRNI---  215 (424)
Q Consensus       143 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~---~i~~~~~~~~-~~~~~l~~~~~d~~v~iwd~~~~~~~~~~---  215 (424)
                      ||.|++||+.+           ......+..|..   .|.+++|+|+ +  +++++++.|+.|++||+++++.+..+   
T Consensus       182 d~~v~vwd~~~-----------~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~l~~~~~dg~i~vwd~~~~~~~~~~~~~  248 (615)
T 1pgu_A          182 DGSVVFYQGPP-----------FKFSASDRTHHKQGSFVRDVEFSPDSG--EFVITVGSDRKISCFDGKSGEFLKYIEDD  248 (615)
T ss_dssp             TTEEEEEETTT-----------BEEEEEECSSSCTTCCEEEEEECSTTC--CEEEEEETTCCEEEEETTTCCEEEECCBT
T ss_pred             CCcEEEEeCCC-----------cceeeeecccCCCCceEEEEEECCCCC--CEEEEEeCCCeEEEEECCCCCEeEEeccc
Confidence            99999999854           445677888998   9999999999 7  89999999999999999999999988   


Q ss_pred             --ecCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeeccc----CcCeEEEEecCCCEEEEeCCC
Q 014475          216 --VFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDH----SKAVTCLAYSTGDLLISGSED  289 (424)
Q Consensus       216 --~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~----~~~i~~~~~~~~~~l~t~~~d  289 (424)
                        .+...|.+++|+ ++.++++++.|+.|++||+++.         +.+..+..+    ...+.++.|+.++++++++.|
T Consensus       249 ~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  318 (615)
T 1pgu_A          249 QEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTS---------KCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLD  318 (615)
T ss_dssp             TBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTT---------EEEEEEECCTTCGGGCEEEEEEEETTEEEEEETT
T ss_pred             ccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCC---------cEEEEEcCCCCcccCceeEEEeCCCCeEEEEECC
Confidence              688999999999 9999999999999999999976         445555554    477888888669999999999


Q ss_pred             CcEEEEeCCCCcEEEEEeccCCCeeEEEEEecCceeeeccCCCceeeccCC
Q 014475          290 GMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRH  340 (424)
Q Consensus       290 g~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~d~~i~iw~~~  340 (424)
                      |.|++||+.+++++..+.+|.++|++++| |+   |++++.||.|++|++.
T Consensus       319 g~i~~~d~~~~~~~~~~~~~~~~v~~~~~-~~---l~~~~~dg~i~~w~~~  365 (615)
T 1pgu_A          319 GTLNFYELGHDEVLKTISGHNKGITALTV-NP---LISGSYDGRIMEWSSS  365 (615)
T ss_dssp             SCEEEEETTEEEEEEEECCCSSCEEEEET-TT---TEEEETTSCEEETTTT
T ss_pred             CCEEEEECCCCcEEEEEeCCCCCEEEEEe-cC---cEEECCCCeEEEEEch
Confidence            99999999999999999999999999999 77   8888888888888865

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=1.1e-39  Score=292.38  Aligned_cols=282  Identities=15%  Similarity=0.179  Sum_probs=242.5

Q ss_pred             CceEEecceeecCCCccccCCCCceeEEEEECCCCc-eeeeecCCCCeeEEEECCCCCEEEEecCCCcEEEEEccCccee
Q 014475           37 HGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQ-VEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLL  115 (424)
Q Consensus        37 ~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~-~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~  115 (424)
                      ..+.+++  |+|+|+.++++..+ +.+..|...... ......|..+|.+++|+|+++++++++ ||.|++||+.+++..
T Consensus        10 ~~v~~~~--~s~dg~~~~~~~~~-~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~   85 (337)
T 1gxr_A           10 KPAYSFH--VTADGQMQPVPFPP-DALIGPGIPRHARQINTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNK   85 (337)
T ss_dssp             EECCEEE--ECSSSCEEECCCCT-TSSSSTTCCSEEEEEEEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCC
T ss_pred             CceeEEE--ECCCCCEEEeecCC-CcEeccccCCccccceeccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCce
Confidence            4577788  99999999988877 556666544433 334456899999999999999999998 999999999887543


Q ss_pred             eee---c--cccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCcee
Q 014475          116 KKW---H--AHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSA  190 (424)
Q Consensus       116 ~~~---~--~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  190 (424)
                      ..+   .  .|...|.+++|+|++++|++++.||.|++||+++         ........+..|...+.+++|+|++  +
T Consensus        86 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~---------~~~~~~~~~~~~~~~i~~~~~~~~~--~  154 (337)
T 1gxr_A           86 SPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAA---------PTPRIKAELTSSAPACYALAISPDS--K  154 (337)
T ss_dssp             SCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCC---------C--EEEEEEECSSSCEEEEEECTTS--S
T ss_pred             eeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCC---------CCcceeeecccCCCceEEEEECCCC--C
Confidence            333   2  6889999999999999999999999999999976         2233456678899999999999988  8


Q ss_pred             EEEEEeCCCcEEEEecCCCceeeeee-cCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccC
Q 014475          191 TIVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHS  269 (424)
Q Consensus       191 ~l~~~~~d~~v~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~  269 (424)
                      .+++++.|+.|++||+++++.+..+. +...+.+++|+|+++++++++.||.|++||++..         +.+..+ .|.
T Consensus       155 ~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~---------~~~~~~-~~~  224 (337)
T 1gxr_A          155 VCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREG---------RQLQQH-DFT  224 (337)
T ss_dssp             EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT---------EEEEEE-ECS
T ss_pred             EEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCC---------ceEeee-cCC
Confidence            99999999999999999999888887 7889999999999999999999999999999886         333333 477


Q ss_pred             cCeEEEEecC-CCEEEEeCCCCcEEEEeCCCCcEEEEEeccCCCeeEEEEEecCceeeeccCCCceeeccCCCCCC
Q 014475          270 KAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGSQL  344 (424)
Q Consensus       270 ~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~d~~i~iw~~~~~~~  344 (424)
                      ..+.+++|+| ++++++++.|+.|++||+++++.. .+..|..+|.+++|+|++++|++++.||.|++|++.+.+.
T Consensus       225 ~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~  299 (337)
T 1gxr_A          225 SQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKY-QLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGAS  299 (337)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEE-EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCE
T ss_pred             CceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeE-EEcCCccceeEEEECCCCCEEEEecCCCcEEEEECCCCeE
Confidence            8899999999 999999999999999999988754 5678999999999999999999999999999999987654

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=3.6e-39  Score=296.24  Aligned_cols=276  Identities=15%  Similarity=0.225  Sum_probs=236.1

Q ss_pred             EeecCCCCCceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCceeee-ecCCCCe
Q 014475            5 IASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVK-SLPAEPI   83 (424)
Q Consensus         5 lat~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~-~~~~~~v   83 (424)
                      +++++ .||.|++||+.+++....+...  +...|.+++  |+|+++++++++.+ |.|++||+.+++.... ..|...|
T Consensus       106 l~~~~-~d~~v~lw~~~~~~~~~~~~~~--~~~~v~~v~--~s~~~~~l~~~~~d-g~i~iwd~~~~~~~~~~~~~~~~v  179 (401)
T 4aez_A          106 VVAVA-LERNVYVWNADSGSVSALAETD--ESTYVASVK--WSHDGSFLSVGLGN-GLVDIYDVESQTKLRTMAGHQARV  179 (401)
T ss_dssp             EEEEE-ETTEEEEEETTTCCEEEEEECC--TTCCEEEEE--ECTTSSEEEEEETT-SCEEEEETTTCCEEEEECCCSSCE
T ss_pred             EEEEE-CCCeEEEeeCCCCcEeEeeecC--CCCCEEEEE--ECCCCCEEEEECCC-CeEEEEECcCCeEEEEecCCCCce
Confidence            56677 7999999999999988877653  557799999  99999999999987 9999999998776544 4688999


Q ss_pred             eEEEECCCCCEEEEecCCCcEEEEEcc-CcceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccc
Q 014475           84 KPIAANSHGTYIAGGGQSGDIYMWEVA-SGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQR  162 (424)
Q Consensus        84 ~~~~~s~~~~~l~~~~~dg~v~iwd~~-~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~  162 (424)
                      .+++|  +++++++|+.||.|++||++ .+.....+.+|...|.+++|+|++++|++++.||.|++||+++         
T Consensus       180 ~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~---------  248 (401)
T 4aez_A          180 GCLSW--NRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARS---------  248 (401)
T ss_dssp             EEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTC---------
T ss_pred             EEEEE--CCCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCC---------
Confidence            99999  56799999999999999998 5667788889999999999999999999999999999999954         


Q ss_pred             cccceEEeecCCcCceeEEEEEEcCceeEEEEEe--CCCcEEEEecCCCceeeeeecCcceeEEEECCCCCEEEEE--eC
Q 014475          163 ASHLYLHSFTGHTLRITDIVIGYGGVSATIVSAS--EDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAG--SR  238 (424)
Q Consensus       163 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~--~d~~v~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~--~~  238 (424)
                        ......+..|...|.+++|+|++. ..+++++  .|+.|++||+++++.+..+.+...+.+++|+|+++.++++  +.
T Consensus       249 --~~~~~~~~~~~~~v~~~~~~p~~~-~ll~~~~gs~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~  325 (401)
T 4aez_A          249 --SIPKFTKTNHNAAVKAVAWCPWQS-NLLATGGGTMDKQIHFWNAATGARVNTVDAGSQVTSLIWSPHSKEIMSTHGFP  325 (401)
T ss_dssp             --SSEEEEECCCSSCCCEEEECTTST-TEEEEECCTTTCEEEEEETTTCCEEEEEECSSCEEEEEECSSSSEEEEEECTT
T ss_pred             --CCccEEecCCcceEEEEEECCCCC-CEEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEEECCCCCeEEEEeecC
Confidence              345667788999999999999764 5677765  7999999999999999999999999999999999999994  48


Q ss_pred             CCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCCCcEEEEEe
Q 014475          239 DGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFR  307 (424)
Q Consensus       239 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~~~~~~  307 (424)
                      ||.|++||+....       ......+.+|...|.+++|+| +.+|++++.||.|++||+.+++.+....
T Consensus       326 dg~i~v~~~~~~~-------~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~~~~~~~~  388 (401)
T 4aez_A          326 DNNLSIWSYSSSG-------LTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYDGDHVKRPI  388 (401)
T ss_dssp             TCEEEEEEEETTE-------EEEEEEEECCSSCCCEEEECTTSSEEEEECTTSEEEEEECCC--------
T ss_pred             CCcEEEEecCCcc-------ceeEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCccccccc
Confidence            9999999998853       234455778999999999999 9999999999999999999998776543

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=100.00  E-value=4.7e-39  Score=286.01  Aligned_cols=276  Identities=20%  Similarity=0.252  Sum_probs=231.9

Q ss_pred             eEEecceeecCCCccccCCCCceeEEEEECCCCceeee---ecCCCCeeEEEECCCCCEEEEecCCCcEEEEEccCccee
Q 014475           39 LACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVK---SLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLL  115 (424)
Q Consensus        39 v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~---~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~  115 (424)
                      +.+++  |++++ +||++ .| ++|+|||+.+++....   ..|...|++++|+|++++|++|+.||.|++||+++++.+
T Consensus        28 ~~~l~--WS~~~-~lAvg-~D-~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~  102 (318)
T 4ggc_A           28 LNLVD--WSSGN-VLAVA-LD-NSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRL  102 (318)
T ss_dssp             CBCEE--ECTTS-EEEEE-ET-TEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEE
T ss_pred             ceEEE--ECCCC-EEEEE-eC-CEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeE
Confidence            45677  99886 56654 45 9999999998876533   246778999999999999999999999999999999999


Q ss_pred             eeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEE
Q 014475          116 KKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSA  195 (424)
Q Consensus       116 ~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~  195 (424)
                      ..+.+|...+.++.+.  +..+++++.++.+++|+...          ....+..+.+|...+..+.+.+++  ..++++
T Consensus       103 ~~~~~h~~~~~~~~~~--~~~l~s~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~--~~l~s~  168 (318)
T 4ggc_A          103 RNMTSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRV----------AEHHVATLSGHSQEVCGLRWAPDG--RHLASG  168 (318)
T ss_dssp             EEEECCSSCEEEEEEE--TTEEEEEETTSEEEEEETTS----------SSCEEEEEECCSSCEEEEEECTTS--SEEEEE
T ss_pred             EEecCccceEEEeecC--CCEEEEEecCCceEeeecCC----------CceeEEEEcCccCceEEEEEcCCC--CEEEEE
Confidence            9999999988876664  67899999999999999865          334566788999999999999988  899999


Q ss_pred             eCCCcEEEEecCCCceeee-----eecCcceeEEEECCCCCEE---EEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecc
Q 014475          196 SEDRTCKVWSLLKGRLLRN-----IVFPSVIDAIALDPAEHVF---YAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSD  267 (424)
Q Consensus       196 ~~d~~v~iwd~~~~~~~~~-----~~~~~~i~~~~~~~~~~~l---~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~  267 (424)
                      +.|+.|++||+++++....     ..+...+.+++++|.+..+   ++++.++.|++||.+...          ......
T Consensus       169 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~----------~~~~~~  238 (318)
T 4ggc_A          169 GNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGA----------CLSAVD  238 (318)
T ss_dssp             ETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCC----------EEEEEE
T ss_pred             ecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccccc----------cccccc
Confidence            9999999999988764322     2266789999999976543   356678999999998853          233445


Q ss_pred             cCcCeEEEEecC-CCEEEEe--CCCCcEEEEeCCCCcEEEEEeccCCCeeEEEEEecCceeeeccCCCceeeccCCCCC
Q 014475          268 HSKAVTCLAYST-GDLLISG--SEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGSQ  343 (424)
Q Consensus       268 ~~~~i~~~~~~~-~~~l~t~--~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~d~~i~iw~~~~~~  343 (424)
                      +...+..+.|+| ++.++++  +.|+.|++||+++++++.++.+|.++|++++|+|++++|++|+.||+|++||+....
T Consensus       239 ~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~~d  317 (318)
T 4ggc_A          239 AHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFELD  317 (318)
T ss_dssp             CSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCCC
T ss_pred             ceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCCC
Confidence            778899999999 7766654  479999999999999999999999999999999999999999999999999987543

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=7.4e-39  Score=295.98  Aligned_cols=293  Identities=18%  Similarity=0.282  Sum_probs=239.1

Q ss_pred             EEEeecCCCCCceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCceeee-ecCCC
Q 014475            3 LLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVK-SLPAE   81 (424)
Q Consensus         3 ~~lat~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~-~~~~~   81 (424)
                      ++||+|.  |++|+|||..+|+....+..+ .|...|.+++  |+|+|++|++++.| |.|++||+.+++.... ..|..
T Consensus       117 n~lAvgl--d~tV~lWd~~tg~~~~~~~~~-~~~~~V~sv~--fspdg~~lasgs~D-g~v~iWd~~~~~~~~~~~~h~~  190 (420)
T 4gga_A          117 NVLAVAL--DNSVYLWSASSGDILQLLQME-QPGEYISSVA--WIKEGNYLAVGTSS-AEVQLWDVQQQKRLRNMTSHSA  190 (420)
T ss_dssp             SEEEEEE--TTEEEEEETTTCCEEEEEECC-STTCCEEEEE--ECTTSSEEEEEETT-SCEEEEETTTTEEEEEECCCSS
T ss_pred             CEEEEEe--CCEEEEEECCCCCEEEEEEec-CCCCcEEEEE--ECCCCCEEEEEECC-CeEEEEEcCCCcEEEEEeCCCC
Confidence            4677766  899999999999998877643 4667899999  99999999999998 9999999998876543 55788


Q ss_pred             CeeEEEECCCCCEEEEecCCCcEEEEEccCc-ceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcc
Q 014475           82 PIKPIAANSHGTYIAGGGQSGDIYMWEVASG-RLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECES  160 (424)
Q Consensus        82 ~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~  160 (424)
                      .+.+++++  +.+|++|+.|+.+++||.... ..+..+.+|...+..+.|+|+++++++++.|+.+++|+..++.     
T Consensus       191 ~v~~~s~~--~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~-----  263 (420)
T 4gga_A          191 RVGSLSWN--SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGE-----  263 (420)
T ss_dssp             CEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCS-----
T ss_pred             ceEEEeeC--CCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCCeeeeeeccccceEEeecccc-----
Confidence            88888774  689999999999999998765 4567788999999999999999999999999999999997642     


Q ss_pred             cccccceEEeecCCcCceeEEEEEEcCceeEEEE--EeCCCcEEEEecCCCceeeeeecCcceeEEEECCCCCEEEEEe-
Q 014475          161 QRASHLYLHSFTGHTLRITDIVIGYGGVSATIVS--ASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGS-  237 (424)
Q Consensus       161 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~--~~~d~~v~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-  237 (424)
                        .....+.....|...|.+++|+|.+. ..+++  |+.|++|++||+.++++...+.....+.++.|+|+++.+++++ 
T Consensus       264 --~~~~~~~~~~~~~~~V~~~~~~p~~~-~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~~~v~~~~~~~~~~~lv~~sg  340 (420)
T 4gga_A          264 --GGWVPLQTFTQHQGAVKAVAWCPWQS-NVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHG  340 (420)
T ss_dssp             --SCSCCSEEECCCSSCEEEEEECTTCT-TEEEEEECTTTCEEEEEETTTTEEEEEEECSSCEEEEEEETTTTEEEEEEC
T ss_pred             --ccceeeeeecccCCceeeeeeCCCcc-cEEEEEeecCCCEEEEEeCCccccceeeccccceeeeeecCCCCeEEEEEe
Confidence              12234556778999999999999875 55554  4579999999999999999999889999999999999988765 


Q ss_pred             -CCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCCCcEEEEEeccCCCeeE
Q 014475          238 -RDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNN  315 (424)
Q Consensus       238 -~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~  315 (424)
                       .|+.|++||+++.         +++..+.+|...|++++|+| +.+|+||+.|++|+|||+.+..+.+....+...+..
T Consensus       341 ~~d~~I~iwd~~~~---------~~v~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv~~~~~~~~~~~~~~~~~~  411 (420)
T 4gga_A          341 FAQNQLVIWKYPTM---------AKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFELDPARRREREKASAAK  411 (420)
T ss_dssp             TTTCCEEEEETTTC---------CEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCSSCC------------
T ss_pred             cCCCEEEEEECCCC---------cEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCCCccchhhhccCCccc
Confidence             7899999999886         66888999999999999999 999999999999999999887777766666555444


Q ss_pred             EEEEe
Q 014475          316 ILVVR  320 (424)
Q Consensus       316 l~~s~  320 (424)
                      ..+..
T Consensus       412 ~s~~~  416 (420)
T 4gga_A          412 SSLIH  416 (420)
T ss_dssp             -----
T ss_pred             cccCC
Confidence            44443

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=2.9e-38  Score=296.13  Aligned_cols=297  Identities=17%  Similarity=0.264  Sum_probs=252.1

Q ss_pred             eEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCceeee-ecCCCCeeEEEECCCCCEEEEecCCCc
Q 014475           25 EQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVK-SLPAEPIKPIAANSHGTYIAGGGQSGD  103 (424)
Q Consensus        25 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~dg~  103 (424)
                      ....+.+|...+  +.++.    ++++++++++.| |.|++||+.+++.... ..|.++|.+++|+|++ ++++|+.||.
T Consensus       113 ~~~~l~~h~~~v--~~~~~----~~~~~l~sgs~d-g~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~  184 (464)
T 3v7d_B          113 QRTTLRGHMTSV--ITCLQ----FEDNYVITGADD-KMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRT  184 (464)
T ss_dssp             EEEEEECCSSSC--EEEEE----EETTEEEEEETT-SCEEEEETTTTEEEEEECCCSSCEEEEEECSTT-EEEEEETTSC
T ss_pred             ceEEEcCCCCCc--EEEEE----ECCCEEEEEcCC-CcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCC
Confidence            445666654332  45544    467899999988 9999999998876644 4589999999999988 8999999999


Q ss_pred             EEEEEccCcceeeeeccccCCeEEEEEc--cCCcEEEEeeCCCcEEEEeCCcccchhcc------------cccccceEE
Q 014475          104 IYMWEVASGRLLKKWHAHYRAVTCLVFS--EDGSFLISGSEDGCVRIWSLLTVFEECES------------QRASHLYLH  169 (424)
Q Consensus       104 v~iwd~~~~~~~~~~~~~~~~i~~~~~~--~~~~~l~s~~~dg~i~iwd~~~~~~~~~~------------~~~~~~~~~  169 (424)
                      |++||+++++.+..+.+|...|.+++|+  ++++++++++.||.|++||+++.......            .........
T Consensus       185 i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (464)
T 3v7d_B          185 VRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVG  264 (464)
T ss_dssp             EEEEETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEE
T ss_pred             EEEEECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEE
Confidence            9999999999999999999999999998  57899999999999999999875432111            011122356


Q ss_pred             eecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeee-cCcceeEEEECCCCCEEEEEeCCCcEEEEEcC
Q 014475          170 SFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYAGSRDGSIYIAALN  248 (424)
Q Consensus       170 ~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~  248 (424)
                      .+.+|...+.++  ++++  +.+++++.|+.|++||+++++.+..+. |...+.+++|+|+++++++|+.||.|++||++
T Consensus       265 ~~~~~~~~v~~~--~~~~--~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~  340 (464)
T 3v7d_B          265 VLRGHMASVRTV--SGHG--NIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLE  340 (464)
T ss_dssp             EECCCSSCEEEE--EEET--TEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETT
T ss_pred             EccCccceEEEE--cCCC--CEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECC
Confidence            778899988877  5666  799999999999999999999988887 88999999999999999999999999999998


Q ss_pred             CCCCCCCCcCceeeeeecccCcCeEEEEecCCCEEEEeCCCCcEEEEeCCCCcEEEEEeccCCCeeEEEEEecCceeeec
Q 014475          249 AESPSTSSYGMHIIGSLSDHSKAVTCLAYSTGDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLG  328 (424)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~  328 (424)
                      ++         +.+..+.+|...|.+++++ +++|++++.||.|++||+++++...... +...+..++|+|++++|+++
T Consensus       341 ~~---------~~~~~~~~h~~~v~~~~~~-~~~l~s~s~dg~v~vwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~  409 (464)
T 3v7d_B          341 NG---------ELMYTLQGHTALVGLLRLS-DKFLVSAAADGSIRGWDANDYSRKFSYH-HTNLSAITTFYVSDNILVSG  409 (464)
T ss_dssp             TT---------EEEEEECCCSSCEEEEEEC-SSEEEEEETTSEEEEEETTTCCEEEEEE-CTTCCCEEEEEECSSEEEEE
T ss_pred             CC---------cEEEEEeCCCCcEEEEEEc-CCEEEEEeCCCcEEEEECCCCceeeeec-CCCCccEEEEEeCCCEEEEe
Confidence            86         6788889999999999998 6899999999999999999988777665 67788999999999999999


Q ss_pred             cCCCceeeccCCCCCCC
Q 014475          329 SFSNPHTSSRRHGSQLP  345 (424)
Q Consensus       329 ~~d~~i~iw~~~~~~~~  345 (424)
                      + ||.|++|++.++++.
T Consensus       410 ~-dg~i~iwd~~~g~~~  425 (464)
T 3v7d_B          410 S-ENQFNIYNLRSGKLV  425 (464)
T ss_dssp             E-TTEEEEEETTTCCEE
T ss_pred             c-CCeEEEEECCCCcEE
Confidence            8 899999999987654

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=100.00  E-value=2.9e-39  Score=290.44  Aligned_cols=291  Identities=14%  Similarity=0.142  Sum_probs=239.9

Q ss_pred             CCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCc----eeeeecCCCCeeEEEECCCCC-EEEEecCCCcEEE
Q 014475           32 CASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQ----VEVKSLPAEPIKPIAANSHGT-YIAGGGQSGDIYM  106 (424)
Q Consensus        32 ~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~----~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~v~i  106 (424)
                      ...|...|.+++  |+|+++++++++.+ |.|++|++.++.    ......|...|.+++|+|+++ +|++|+.||.|++
T Consensus         7 ~~~h~~~v~~~~--~s~~~~~l~~~~~d-~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~   83 (342)
T 1yfq_A            7 EQAPKDYISDIK--IIPSKSLLLITSWD-GSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILK   83 (342)
T ss_dssp             SSCCSSCEEEEE--EEGGGTEEEEEETT-SEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEE
T ss_pred             ccCCCCcEEEEE--EcCCCCEEEEEcCC-CeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEE
Confidence            346778899999  99999999999988 999999998877    555667899999999999999 9999999999999


Q ss_pred             EEc-cCcceeeeecc--ccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEE
Q 014475          107 WEV-ASGRLLKKWHA--HYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVI  183 (424)
Q Consensus       107 wd~-~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  183 (424)
                      ||+ .+++. ..+.+  |...|.+++|+| ++++++++.|+.|++||+++.......  .....+..+. |...+.+++|
T Consensus        84 wd~~~~~~~-~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~--~~~~~~~~~~-~~~~v~~~~~  158 (342)
T 1yfq_A           84 VDLIGSPSF-QALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIA--VKNLNSNNTK-VKNKIFTMDT  158 (342)
T ss_dssp             ECSSSSSSE-EECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEE--EEESCSSSSS-SCCCEEEEEE
T ss_pred             EEeccCCce-EeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEccccccccccc--ccCCeeeEEe-eCCceEEEEe
Confidence            999 77754 67778  999999999999 999999999999999998541100000  0012223334 8889999999


Q ss_pred             EEcCceeEEEEEeCCCcEEEEecCC-Ccee---eeeecCcceeEEEECC-CCCEEEEEeCCCcEEEEEcCCCCCCCCCcC
Q 014475          184 GYGGVSATIVSASEDRTCKVWSLLK-GRLL---RNIVFPSVIDAIALDP-AEHVFYAGSRDGSIYIAALNAESPSTSSYG  258 (424)
Q Consensus       184 ~~~~~~~~l~~~~~d~~v~iwd~~~-~~~~---~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  258 (424)
                      +++   . +++++.|+.|++||+++ +...   ....+...+.+++|+| +++++++++.||.+++|+++.......   
T Consensus       159 ~~~---~-l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~---  231 (342)
T 1yfq_A          159 NSS---R-LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYN---  231 (342)
T ss_dssp             CSS---E-EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTT---
T ss_pred             cCC---c-EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccc---
Confidence            865   3 99999999999999988 5432   2223778899999999 999999999999999999987610000   


Q ss_pred             ceeeeeecccC---------cCeEEEEecC-CCEEEEeCCCCcEEEEeCCCCcEEEEEecc-CCCeeEEEEEecCceeee
Q 014475          259 MHIIGSLSDHS---------KAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLA-KGPVNNILVVRRPLYLNL  327 (424)
Q Consensus       259 ~~~~~~~~~~~---------~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~-~~~v~~l~~s~~~~~l~~  327 (424)
                      ......+..|.         ..|.+++|+| +++|++++.||.|++||+.+++++..+..| .++|.+++  |++++|++
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~--~~~~~l~s  309 (342)
T 1yfq_A          232 SSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIA--CSDNILCL  309 (342)
T ss_dssp             CTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEE--ECSSEEEE
T ss_pred             cccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhcccCCCceEec--CCCCeEEE
Confidence            02334455554         4999999999 999999999999999999999999999998 99999999  99999999


Q ss_pred             ccCCCc-eeeccC
Q 014475          328 GSFSNP-HTSSRR  339 (424)
Q Consensus       328 ~~~d~~-i~iw~~  339 (424)
                      ++.||. .+.+..
T Consensus       310 ~s~Dg~~~~~~~~  322 (342)
T 1yfq_A          310 ATSDDTFKTNAAI  322 (342)
T ss_dssp             EEECTHHHHCSSS
T ss_pred             EecCCcccccccc
Confidence            999999 777775

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=5.7e-40  Score=297.03  Aligned_cols=282  Identities=11%  Similarity=0.079  Sum_probs=219.7

Q ss_pred             CceEEecceeecCCCccccCCCC------ceeEEEEECCCCcee-----------eeecCCCCeeEEEECCCCCEEEEe-
Q 014475           37 HGLACVGQRFLASSQLREQPSAS------SGSILYWSWSKPQVE-----------VKSLPAEPIKPIAANSHGTYIAGG-   98 (424)
Q Consensus        37 ~~v~~~~~~~~~~~~~l~~~~~~------~g~i~vwd~~~~~~~-----------~~~~~~~~v~~~~~s~~~~~l~~~-   98 (424)
                      -+|.+++  |+|++++|++||.+      ++.|++|+++.....           ....+...|.+++++  ++.+++| 
T Consensus        15 ~PV~sv~--fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~--~~~~~~g~   90 (365)
T 4h5i_A           15 YPAYGAK--FLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDAS--KGIILVGC   90 (365)
T ss_dssp             SCEEEEE--EEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEE--TTEEEEEC
T ss_pred             CCEEEEE--EeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeC--CCEEEEEE
Confidence            3589999  99999999998653      146999998755421           112356678887764  4566654 


Q ss_pred             ----------cCCCcEEEEEccCcceeee---------eccccCCeEEEEEccCCcEEEEe--eCCCcEEEEeCCcccch
Q 014475           99 ----------GQSGDIYMWEVASGRLLKK---------WHAHYRAVTCLVFSEDGSFLISG--SEDGCVRIWSLLTVFEE  157 (424)
Q Consensus        99 ----------~~dg~v~iwd~~~~~~~~~---------~~~~~~~i~~~~~~~~~~~l~s~--~~dg~i~iwd~~~~~~~  157 (424)
                                +.|+.+++|++.+......         ...+...+.+++|+|||++++++  +.|++|++||++++   
T Consensus        91 ~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~---  167 (365)
T 4h5i_A           91 NENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDL---  167 (365)
T ss_dssp             CCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTT---
T ss_pred             CCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCC---
Confidence                      4578899999876532211         12344568999999999997654  47899999999652   


Q ss_pred             hcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeee---cCcceeEEEECCCCCEEE
Q 014475          158 CESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV---FPSVIDAIALDPAEHVFY  234 (424)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~---~~~~i~~~~~~~~~~~l~  234 (424)
                              ..+..+. |...|.+++|+|++  +++++++.+ .+++|+..+++.+....   +...+.+++|+|++..++
T Consensus       168 --------~~~~~~~-~~~~V~~v~fspdg--~~l~s~s~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~  235 (365)
T 4h5i_A          168 --------TEKFEIE-TRGEVKDLHFSTDG--KVVAYITGS-SLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLI  235 (365)
T ss_dssp             --------EEEEEEE-CSSCCCEEEECTTS--SEEEEECSS-CEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEE
T ss_pred             --------cEEEEeC-CCCceEEEEEccCC--ceEEeccce-eEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEE
Confidence                    2334443 77889999999998  888888855 56677777776554332   677899999999999999


Q ss_pred             EEeCCC----cEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCCCcEEEEE-ec
Q 014475          235 AGSRDG----SIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMF-RL  308 (424)
Q Consensus       235 ~~~~dg----~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~~~~~-~~  308 (424)
                      +++.++    .+++|++......     ......+.+|..+|++++|+| +++||+|+.|++|+|||+++++++..+ .+
T Consensus       236 ~~s~d~~~~~~i~~~~~~~~~~~-----~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~g  310 (365)
T 4h5i_A          236 AASLKKGKGIVLTKISIKSGNTS-----VLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQA  310 (365)
T ss_dssp             EEEESSSCCEEEEEEEEETTEEE-----EEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTS
T ss_pred             EEecCCcceeEEeecccccceec-----ceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCc
Confidence            998887    5788888765311     122456778999999999999 999999999999999999999999986 68


Q ss_pred             cCCCeeEEEEEecCceeeeccCCCceeeccCCCC
Q 014475          309 AKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGS  342 (424)
Q Consensus       309 ~~~~v~~l~~s~~~~~l~~~~~d~~i~iw~~~~~  342 (424)
                      |.++|++++|+|||++||+||.|++|++|+++..
T Consensus       311 H~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~  344 (365)
T 4h5i_A          311 HSFAITEVTISPDSTYVASVSAANTIHIIKLPLN  344 (365)
T ss_dssp             SSSCEEEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred             ccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence            9999999999999999999999999999998643

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=8e-40  Score=290.52  Aligned_cols=250  Identities=18%  Similarity=0.166  Sum_probs=208.7

Q ss_pred             eecCCCCeeEEEECCCCCEEEEecCCCcEEEEEccCcc--eeeeeccccCCeEEEEEcc--CCcEEEEeeCCCcEEEEeC
Q 014475           76 KSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGR--LLKKWHAHYRAVTCLVFSE--DGSFLISGSEDGCVRIWSL  151 (424)
Q Consensus        76 ~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~--~~~~~~~~~~~i~~~~~~~--~~~~l~s~~~dg~i~iwd~  151 (424)
                      ...|.++|++++|+|+|++||+|+.|++|++||++++.  .+..+.+|...|.+++|+|  ++++|++|+.|++|++||+
T Consensus         9 ~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~   88 (316)
T 3bg1_A            9 DTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWRE   88 (316)
T ss_dssp             -----CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECC
T ss_pred             cccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEEC
Confidence            34689999999999999999999999999999998774  4677899999999999986  4889999999999999999


Q ss_pred             CcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCcee---eeee-cCcceeEEEEC
Q 014475          152 LTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLL---RNIV-FPSVIDAIALD  227 (424)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~---~~~~-~~~~i~~~~~~  227 (424)
                      +++         .......+.+|...|.+++|+|+..+.+|++++.|+.|++||++.+...   ..+. |...+.+++|+
T Consensus        89 ~~~---------~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~  159 (316)
T 3bg1_A           89 ENG---------TWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWA  159 (316)
T ss_dssp             SSS---------CCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEEC
T ss_pred             CCC---------cceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEc
Confidence            652         2234566788999999999999844489999999999999999876422   2222 67789999999


Q ss_pred             CC-----------------CCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-C----CEEEE
Q 014475          228 PA-----------------EHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-G----DLLIS  285 (424)
Q Consensus       228 ~~-----------------~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~----~~l~t  285 (424)
                      |+                 +.+|++|+.|+.|++||++....      ......+.+|...|.+++|+| +    .+|++
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~------~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las  233 (316)
T 3bg1_A          160 PAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQ------WKEEQKLEAHSDWVRDVAWAPSIGLPTSTIAS  233 (316)
T ss_dssp             CCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSC------EEEEECCBCCSSCEEEEECCCCSSCSCCEEEE
T ss_pred             cccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCc------cceeeecccCCCceEEEEecCCCCCCCceEEE
Confidence            97                 47899999999999999975321      245667889999999999999 5    78999


Q ss_pred             eCCCCcEEEEeCCCCc----EEEEEeccCCCeeEEEEEecCceeeeccCCCceeeccCC
Q 014475          286 GSEDGMVRVWDPITHN----IVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRH  340 (424)
Q Consensus       286 ~~~dg~i~iwd~~~~~----~~~~~~~~~~~v~~l~~s~~~~~l~~~~~d~~i~iw~~~  340 (424)
                      ++.|++|++||+.+..    ....+..|.+.|.+++|+|++++|++++.|+.|++|+..
T Consensus       234 ~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~  292 (316)
T 3bg1_A          234 CSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKES  292 (316)
T ss_dssp             EETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEEEC
T ss_pred             EcCCCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEEC
Confidence            9999999999988631    234456789999999999999999999999999999975

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.3e-38  Score=287.42  Aligned_cols=275  Identities=19%  Similarity=0.242  Sum_probs=245.0

Q ss_pred             EEEeecCCCCCceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCceeeeecCCCC
Q 014475            3 LLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSLPAEP   82 (424)
Q Consensus         3 ~~lat~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~~~~~~~   82 (424)
                      .+||+++ .||.|+|||+.+++.+..+..|   ...|.+++  |+|+++++++++.| |.|++||+.+++......+..+
T Consensus        45 ~~l~~~~-~dg~i~vwd~~~~~~~~~~~~h---~~~v~~~~--~~~~~~~l~s~~~d-g~i~iwd~~~~~~~~~~~~~~~  117 (369)
T 3zwl_B           45 DLLFSCS-KDSSASVWYSLNGERLGTLDGH---TGTIWSID--VDCFTKYCVTGSAD-YSIKLWDVSNGQCVATWKSPVP  117 (369)
T ss_dssp             CEEEEEE-SSSCEEEEETTTCCEEEEECCC---SSCEEEEE--ECTTSSEEEEEETT-TEEEEEETTTCCEEEEEECSSC
T ss_pred             CEEEEEe-CCCEEEEEeCCCchhhhhhhhc---CCcEEEEE--EcCCCCEEEEEeCC-CeEEEEECCCCcEEEEeecCCC
Confidence            4689999 9999999999999999888765   46688888  99999999999987 9999999999888777779999


Q ss_pred             eeEEEECCCCCEEEEecCC-----CcEEEEEccCcc-----------eeeeeccccC--CeEEEEEccCCcEEEEeeCCC
Q 014475           83 IKPIAANSHGTYIAGGGQS-----GDIYMWEVASGR-----------LLKKWHAHYR--AVTCLVFSEDGSFLISGSEDG  144 (424)
Q Consensus        83 v~~~~~s~~~~~l~~~~~d-----g~v~iwd~~~~~-----------~~~~~~~~~~--~i~~~~~~~~~~~l~s~~~dg  144 (424)
                      |.+++|+|+++++++++.+     |.|++||+.++.           ....+..|..  .+.+++|+|++++|++++.||
T Consensus       118 v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg  197 (369)
T 3zwl_B          118 VKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDG  197 (369)
T ss_dssp             EEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTS
T ss_pred             eEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCC
Confidence            9999999999999999998     999999998764           2334445555  899999999999999999999


Q ss_pred             cEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeeecCcceeEE
Q 014475          145 CVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAI  224 (424)
Q Consensus       145 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~i~~~  224 (424)
                      .|++||+++          .......+..|...|.+++|+|++  .+|++++.|+.|++||+++++.+..+.+...+..+
T Consensus       198 ~i~i~d~~~----------~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~  265 (369)
T 3zwl_B          198 KISKYDVSN----------NYEYVDSIDLHEKSISDMQFSPDL--TYFITSSRDTNSFLVDVSTLQVLKKYETDCPLNTA  265 (369)
T ss_dssp             EEEEEETTT----------TTEEEEEEECCSSCEEEEEECTTS--SEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEE
T ss_pred             EEEEEECCC----------CcEeEEEEecCCCceeEEEECCCC--CEEEEecCCceEEEEECCCCceeeeecCCCCceeE
Confidence            999999954          134567788899999999999988  89999999999999999999999999999999999


Q ss_pred             EECCCCCEEEEEeCCC--------------cEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCC
Q 014475          225 ALDPAEHVFYAGSRDG--------------SIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSED  289 (424)
Q Consensus       225 ~~~~~~~~l~~~~~dg--------------~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~d  289 (424)
                      +|+|+++++++++.++              .+++||....         ..+..+.+|...|++++|+| +++|++++.|
T Consensus       266 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~---------~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d  336 (369)
T 3zwl_B          266 VITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFE---------EEIGRVQGHFGPLNTVAISPQGTSYASGGED  336 (369)
T ss_dssp             EECSSSSEEEEEECCC-------------CEEEEEETTTC---------CEEEEEECCSSCEEEEEECTTSSEEEEEETT
T ss_pred             EecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCC---------cchhheecccCcEEEEEECCCCCEEEEEcCC
Confidence            9999999999999988              8999999886         56778889999999999999 9999999999


Q ss_pred             CcEEEEeCCCCcEEEE
Q 014475          290 GMVRVWDPITHNIVRM  305 (424)
Q Consensus       290 g~i~iwd~~~~~~~~~  305 (424)
                      |.|++|+++++.....
T Consensus       337 g~v~iw~~~~~~~~~~  352 (369)
T 3zwl_B          337 GFIRLHHFEKSYFDFK  352 (369)
T ss_dssp             SEEEEEEECHHHHTCC
T ss_pred             CeEEEEECccccchhH
Confidence            9999999987654433

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=1.3e-38  Score=319.05  Aligned_cols=292  Identities=17%  Similarity=0.266  Sum_probs=258.7

Q ss_pred             eEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCceeee-ecCCCCeeEEEECCCCCEEEEecCCCc
Q 014475           25 EQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVK-SLPAEPIKPIAANSHGTYIAGGGQSGD  103 (424)
Q Consensus        25 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~dg~  103 (424)
                      ..+.+.+|   ...|.+++  |+|+++++++++.+ |.|++||+.+++.... ..|..+|.+++|+|++++|++|+.||.
T Consensus         5 ~~~~~~~h---~~~v~~i~--~sp~~~~la~~~~~-g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~   78 (814)
T 3mkq_A            5 IKKTFSNR---SDRVKGID--FHPTEPWVLTTLYS-GRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFR   78 (814)
T ss_dssp             CEEEEEEE---CSCEEEEE--ECSSSSEEEEEETT-SEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSE
T ss_pred             cceeeecC---CCceEEEE--ECCCCCEEEEEeCC-CEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCe
Confidence            34555554   46789999  99999999999987 9999999988766543 458999999999999999999999999


Q ss_pred             EEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEE
Q 014475          104 IYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVI  183 (424)
Q Consensus       104 v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  183 (424)
                      |++||+.+++.+..+.+|...|.+++|+|++++|++++.||.|++||+++          .......+.+|...|.+++|
T Consensus        79 i~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~----------~~~~~~~~~~~~~~v~~~~~  148 (814)
T 3mkq_A           79 IRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWEN----------NWALEQTFEGHEHFVMCVAF  148 (814)
T ss_dssp             EEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGG----------TSEEEEEEECCSSCEEEEEE
T ss_pred             EEEEECCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCC----------CceEEEEEcCCCCcEEEEEE
Confidence            99999999999999999999999999999999999999999999999954          22456677889999999999


Q ss_pred             EE-cCceeEEEEEeCCCcEEEEecCCCceeeeee--cCcceeEEEECC--CCCEEEEEeCCCcEEEEEcCCCCCCCCCcC
Q 014475          184 GY-GGVSATIVSASEDRTCKVWSLLKGRLLRNIV--FPSVIDAIALDP--AEHVFYAGSRDGSIYIAALNAESPSTSSYG  258 (424)
Q Consensus       184 ~~-~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~--~~~~i~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  258 (424)
                      +| ++  ..+++++.||.|++||+.+++....+.  +...+.+++|+|  ++.++++++.||.|++||++++        
T Consensus       149 ~p~~~--~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~--------  218 (814)
T 3mkq_A          149 NPKDP--STFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTK--------  218 (814)
T ss_dssp             ETTEE--EEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTT--------
T ss_pred             EcCCC--CEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCC--------
Confidence            99 66  899999999999999999888777766  348899999999  9999999999999999999886        


Q ss_pred             ceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCCCcEEEEEeccCCCeeEEEEEecCcee-eeccCCCceee
Q 014475          259 MHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYL-NLGSFSNPHTS  336 (424)
Q Consensus       259 ~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l-~~~~~d~~i~i  336 (424)
                       ..+..+.+|...|.+++|+| ++++++++.||.|++||+.+++.+..+..|...+.+++|+|++..+ ++++.++.+.+
T Consensus       219 -~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  297 (814)
T 3mkq_A          219 -SCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTV  297 (814)
T ss_dssp             -EEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEEEECCSSSSEEEEEECTTCGGGEEEEEETTEEEE
T ss_pred             -cEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCCCcEEEEEEccCCCceEEEEEeCCCEEE
Confidence             56778888999999999999 9999999999999999999999999999999999999999998743 55556777888


Q ss_pred             ccCCCCC
Q 014475          337 SRRHGSQ  343 (424)
Q Consensus       337 w~~~~~~  343 (424)
                      |++....
T Consensus       298 ~~~~~~~  304 (814)
T 3mkq_A          298 LSLGNDE  304 (814)
T ss_dssp             EECSCCS
T ss_pred             EEcCCCC
Confidence            8876544

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=100.00  E-value=2.3e-38  Score=294.06  Aligned_cols=282  Identities=19%  Similarity=0.332  Sum_probs=243.6

Q ss_pred             EeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCceeee-ecCCCCeeEEEECCCCCEEEEecCCCcEEE
Q 014475           28 RYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVK-SLPAEPIKPIAANSHGTYIAGGGQSGDIYM  106 (424)
Q Consensus        28 ~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~dg~v~i  106 (424)
                      .+..+..+...|.++.    ++++++++++.+ |.|++||..+++.... ..|...|.+++|  ++++|++|+.||.|++
T Consensus       125 ~~~~~~~~~~~v~~~~----~d~~~l~~g~~d-g~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~v  197 (435)
T 1p22_A          125 RIHCRSETSKGVYCLQ----YDDQKIVSGLRD-NTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRV  197 (435)
T ss_dssp             CEECCCSSCCCEEEEE----CCSSEEEEEESS-SCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEE
T ss_pred             EEecccCCCCcEEEEE----ECCCEEEEEeCC-CeEEEEeCCCCeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEE
Confidence            3455666777888866    489999999988 9999999998876544 468899999999  7889999999999999


Q ss_pred             EEccCcceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEc
Q 014475          107 WEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYG  186 (424)
Q Consensus       107 wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  186 (424)
                      ||+.+++.+..+.+|...|.+++|+  ++.+++|+.||.|++||++++.        .......+.+|...|.++++  +
T Consensus       198 wd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~--------~~~~~~~~~~~~~~v~~~~~--~  265 (435)
T 1p22_A          198 WDVNTGEMLNTLIHHCEAVLHLRFN--NGMMVTCSKDRSIAVWDMASPT--------DITLRRVLVGHRAAVNVVDF--D  265 (435)
T ss_dssp             EESSSCCEEEEECCCCSCEEEEECC--TTEEEEEETTSCEEEEECSSSS--------CCEEEEEECCCSSCEEEEEE--E
T ss_pred             EECCCCcEEEEEcCCCCcEEEEEEc--CCEEEEeeCCCcEEEEeCCCCC--------CceeeeEecCCCCcEEEEEe--C
Confidence            9999999999999999999999997  4589999999999999997632        12233567889999999998  4


Q ss_pred             CceeEEEEEeCCCcEEEEecCCCceeeeee-cCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeee
Q 014475          187 GVSATIVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSL  265 (424)
Q Consensus       187 ~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~  265 (424)
                      +  +.+++++.||.|++||+++++.+..+. +...+.++++  ++.++++|+.||.|++||++++         ..+..+
T Consensus       266 ~--~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~g~~dg~i~iwd~~~~---------~~~~~~  332 (435)
T 1p22_A          266 D--KYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECG---------ACLRVL  332 (435)
T ss_dssp             T--TEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEE--ETTEEEEEETTSCEEEEETTTC---------CEEEEE
T ss_pred             C--CEEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCCC---------CEEEEE
Confidence            4  799999999999999999999998887 7889999998  5789999999999999999986         567788


Q ss_pred             cccCcCeEEEEecCCCEEEEeCCCCcEEEEeCCCCc---------EEEEEeccCCCeeEEEEEecCceeeeccCCCceee
Q 014475          266 SDHSKAVTCLAYSTGDLLISGSEDGMVRVWDPITHN---------IVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTS  336 (424)
Q Consensus       266 ~~~~~~i~~~~~~~~~~l~t~~~dg~i~iwd~~~~~---------~~~~~~~~~~~v~~l~~s~~~~~l~~~~~d~~i~i  336 (424)
                      .+|...|.+++|+ +.+|++|+.||.|++||+.+++         ++..+.+|.++|.+++|  ++.+|++++.||.|++
T Consensus       333 ~~h~~~v~~~~~~-~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~Dg~i~i  409 (435)
T 1p22_A          333 EGHEELVRCIRFD-NKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILI  409 (435)
T ss_dssp             CCCSSCEEEEECC-SSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCSSSEEEE
T ss_pred             eCCcCcEEEEEec-CCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEe--CCCEEEEEeCCCEEEE
Confidence            8999999999994 7899999999999999998776         89999999999999999  7889999999999999


Q ss_pred             ccCCCCCC
Q 014475          337 SRRHGSQL  344 (424)
Q Consensus       337 w~~~~~~~  344 (424)
                      |++.+...
T Consensus       410 wd~~~~~~  417 (435)
T 1p22_A          410 WDFLNDPA  417 (435)
T ss_dssp             EC------
T ss_pred             EECCCCCC
Confidence            99986643

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=1.9e-38  Score=317.75  Aligned_cols=311  Identities=16%  Similarity=0.198  Sum_probs=258.3

Q ss_pred             EEEeecCCCCCceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCceeee-ecCCC
Q 014475            3 LLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVK-SLPAE   81 (424)
Q Consensus         3 ~~lat~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~-~~~~~   81 (424)
                      .+||+++ .||.|+|||+.+++.+..+..|.   ..|.+++  |+|+++++++++.+ |.|++||+.+++.... ..|.+
T Consensus        26 ~~la~~~-~~g~v~iwd~~~~~~~~~~~~~~---~~v~~~~--~s~~~~~l~~~~~d-g~i~vw~~~~~~~~~~~~~~~~   98 (814)
T 3mkq_A           26 PWVLTTL-YSGRVEIWNYETQVEVRSIQVTE---TPVRAGK--FIARKNWIIVGSDD-FRIRVFNYNTGEKVVDFEAHPD   98 (814)
T ss_dssp             SEEEEEE-TTSEEEEEETTTTEEEEEEECCS---SCEEEEE--EEGGGTEEEEEETT-SEEEEEETTTCCEEEEEECCSS
T ss_pred             CEEEEEe-CCCEEEEEECCCCceEEEEecCC---CcEEEEE--EeCCCCEEEEEeCC-CeEEEEECCCCcEEEEEecCCC
Confidence            3688999 99999999999999999888654   6688888  99999999999997 9999999998876544 55899


Q ss_pred             CeeEEEECCCCCEEEEecCCCcEEEEEccCc-ceeeeeccccCCeEEEEEcc-CCcEEEEeeCCCcEEEEeCCcccchhc
Q 014475           82 PIKPIAANSHGTYIAGGGQSGDIYMWEVASG-RLLKKWHAHYRAVTCLVFSE-DGSFLISGSEDGCVRIWSLLTVFEECE  159 (424)
Q Consensus        82 ~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~-~~~~~~~~~~~~i~~~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~  159 (424)
                      .|.+++|+|++++|++++.||.|++||++++ .....+.+|...|.+++|+| +++.+++++.||.|++||+.++.    
T Consensus        99 ~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~----  174 (814)
T 3mkq_A           99 YIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQST----  174 (814)
T ss_dssp             CEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSS----
T ss_pred             CEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc----
Confidence            9999999999999999999999999999987 66778889999999999999 88999999999999999996521    


Q ss_pred             ccccccceEEee-cCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeee-cCcceeEEEECCCCCEEEEEe
Q 014475          160 SQRASHLYLHSF-TGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYAGS  237 (424)
Q Consensus       160 ~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~  237 (424)
                             ....+ ..+...+.+++|+|.+++..+++++.||.|++||+++++.+..+. |...+.+++|+|++.++++++
T Consensus       175 -------~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  247 (814)
T 3mkq_A          175 -------PNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGS  247 (814)
T ss_dssp             -------CSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEE
T ss_pred             -------ceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEe
Confidence                   12233 344589999999993333899999999999999999999888887 788999999999999999999


Q ss_pred             CCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CC-EEEEeCCCCcEEEEeCCCCcEEEE----------
Q 014475          238 RDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GD-LLISGSEDGMVRVWDPITHNIVRM----------  305 (424)
Q Consensus       238 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~-~l~t~~~dg~i~iwd~~~~~~~~~----------  305 (424)
                      .||.|++||+.+.         .....+..|...+.+++|+| +. .+++++.++.+.+|++..+.....          
T Consensus       248 ~dg~v~vwd~~~~---------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  318 (814)
T 3mkq_A          248 EDGTLKIWNSSTY---------KVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGNDEPTLSLDPVGKLVWS  318 (814)
T ss_dssp             TTSCEEEEETTTC---------SEEEEECCSSSSEEEEEECTTCGGGEEEEEETTEEEEEECSCCSCCEEECSSSEEEEE
T ss_pred             CCCeEEEEECCCC---------cEEEEeecCCCcEEEEEEccCCCceEEEEEeCCCEEEEEcCCCCceeEECCCCCEEEE
Confidence            9999999999886         56677888999999999999 54 234444566788888764322111          


Q ss_pred             ---------------------------------EeccCCCeeEEEEEecCceeeeccCCCceeeccCCC
Q 014475          306 ---------------------------------FRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHG  341 (424)
Q Consensus       306 ---------------------------------~~~~~~~v~~l~~s~~~~~l~~~~~d~~i~iw~~~~  341 (424)
                                                       +..+...+.+++|+|+|++|++++ |+.+.+|++..
T Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~-~~~~~i~~~~~  386 (814)
T 3mkq_A          319 GGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAHSPNGRFVTVVG-DGEYVIYTALA  386 (814)
T ss_dssp             CCTTSCTTCEEEEECCSCCCCCSSSCBCCCCEEECCCSSCCSEEEECTTSSEEEEEE-TTEEEEEETTT
T ss_pred             CcccccceeeeeeecccccccccCccceeeeecCCCCccCCceeEECCCCCEEEEec-CCEEEEEECcc
Confidence                                             122344578888888888888877 78888888653

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=8e-39  Score=290.14  Aligned_cols=282  Identities=14%  Similarity=0.185  Sum_probs=232.2

Q ss_pred             EeecCCCCCceEEEeCCCCceEEEeeCCCC--CCCceEEecceeecC----CCccccCCCCceeEEEEECCCCceeee-e
Q 014475            5 IASSSVADTGIGCWDLESGAEQLRYKSCAS--PPHGLACVGQRFLAS----SQLREQPSASSGSILYWSWSKPQVEVK-S   77 (424)
Q Consensus         5 lat~~~~dg~i~vwd~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~----~~~l~~~~~~~g~i~vwd~~~~~~~~~-~   77 (424)
                      +++++ .++.|+|||+.+++.+..+..+..  +...+.+++  |+|+    ++++++++.+ |.|++||+.+++.... .
T Consensus        37 ~~~~~-~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~--~~~~~~~~~~~l~~~~~d-g~i~v~d~~~~~~~~~~~  112 (366)
T 3k26_A           37 VFATV-GSNRVTLYECHSQGEIRLLQSYVDADADENFYTCA--WTYDSNTSHPLLAVAGSR-GIIRIINPITMQCIKHYV  112 (366)
T ss_dssp             EEEEE-ETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEE--EEECTTTCCEEEEEEETT-CEEEEECTTTCCEEEEEE
T ss_pred             EEEEC-CCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEE--eccCCCCCCCEEEEecCC-CEEEEEEchhceEeeeec
Confidence            44444 477999999999988887775543  567799999  9999    6689999887 9999999998876544 4


Q ss_pred             cCCCCeeEEEECC-CCCEEEEecCCCcEEEEEccCcceeeee---ccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCc
Q 014475           78 LPAEPIKPIAANS-HGTYIAGGGQSGDIYMWEVASGRLLKKW---HAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLT  153 (424)
Q Consensus        78 ~~~~~v~~~~~s~-~~~~l~~~~~dg~v~iwd~~~~~~~~~~---~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~  153 (424)
                      .|..+|.+++|+| ++++|++|+.||.|++||+++++.+..+   ..|...|.+++|+|++++|++++.||.|++||+++
T Consensus       113 ~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~  192 (366)
T 3k26_A          113 GHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINS  192 (366)
T ss_dssp             SCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCS
T ss_pred             CCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCC
Confidence            5899999999999 9999999999999999999999988887   78999999999999999999999999999999987


Q ss_pred             ccchhcccc-----------------cccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCce-----
Q 014475          154 VFEECESQR-----------------ASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRL-----  211 (424)
Q Consensus       154 ~~~~~~~~~-----------------~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~-----  211 (424)
                      +........                 ...........|...|.+++|+  +  +++++++.|+.|++||+++++.     
T Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~--~~l~~~~~d~~i~~wd~~~~~~~~~~~  268 (366)
T 3k26_A          193 KRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--G--DLILSKSCENAIVCWKPGKMEDDIDKI  268 (366)
T ss_dssp             HHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--T--TEEEEECSSSEEEEEEESSTTCCGGGC
T ss_pred             CccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--C--CEEEEEecCCEEEEEeCCCcccccccc
Confidence            543221110                 0111233445699999999998  4  7999999999999999987654     


Q ss_pred             ---------eeeee-cCcceeEEEECCC--CCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeeccc--CcCeEEEEe
Q 014475          212 ---------LRNIV-FPSVIDAIALDPA--EHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDH--SKAVTCLAY  277 (424)
Q Consensus       212 ---------~~~~~-~~~~i~~~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~--~~~i~~~~~  277 (424)
                               +..+. +...+.+++|+|+  +++|++++.||.|++||++.+....     .....+..|  ...|++++|
T Consensus       269 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~-----~~~~~~~~~~~~~~v~~~~~  343 (366)
T 3k26_A          269 KPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHK-----AKCTTLTHHKCGAAIRQTSF  343 (366)
T ss_dssp             CTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGG-----CEEEEECCTTCCSCEEEEEE
T ss_pred             ccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCcc-----ccceEEcccccCCceEEEEe
Confidence                     44444 6778999999999  9999999999999999999864221     234466666  799999999


Q ss_pred             cC-CCEEEEeCCCCcEEEEeCCC
Q 014475          278 ST-GDLLISGSEDGMVRVWDPIT  299 (424)
Q Consensus       278 ~~-~~~l~t~~~dg~i~iwd~~~  299 (424)
                      +| +++|++++.||.|++||+.+
T Consensus       344 s~~~~~l~s~~~dg~i~iwd~~~  366 (366)
T 3k26_A          344 SRDSSILIAVCDDASIWRWDRLR  366 (366)
T ss_dssp             CTTSSEEEEEETTSEEEEEEC--
T ss_pred             CCCCCeEEEEeCCCEEEEEEecC
Confidence            99 99999999999999999853

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=6.5e-39  Score=294.28  Aligned_cols=268  Identities=17%  Similarity=0.239  Sum_probs=231.2

Q ss_pred             EEeecCCCCCceEEEeCCCCc------eEEEeeCCCCCCCceEEecceeecC----C---CccccCCCCceeEEEEECCC
Q 014475            4 LIASSSVADTGIGCWDLESGA------EQLRYKSCASPPHGLACVGQRFLAS----S---QLREQPSASSGSILYWSWSK   70 (424)
Q Consensus         4 ~lat~~~~dg~i~vwd~~~~~------~~~~~~~~~~~~~~v~~~~~~~~~~----~---~~l~~~~~~~g~i~vwd~~~   70 (424)
                      +||+++ .||+|+|||+.+++      .+..+..|   ...|.+++  |+|+    +   +++++++.+ |.|++|++.+
T Consensus        28 ~l~s~~-~dg~i~iw~~~~~~~~~~~~~~~~~~~h---~~~v~~~~--~~~~~~~~g~~~~~l~s~~~d-g~i~iw~~~~  100 (397)
T 1sq9_A           28 FTVSCS-GDGYLKVWDNKLLDNENPKDKSYSHFVH---KSGLHHVD--VLQAIERDAFELCLVATTSFS-GDLLFYRITR  100 (397)
T ss_dssp             EEEEEE-TTSEEEEEESBCCTTCCGGGGEEEEECC---TTCEEEEE--EEEEEETTTEEEEEEEEEETT-SCEEEEEEEE
T ss_pred             eEEEEc-CCCEEEEEECCCcccccCCCcceEEecC---CCcEEEEE--EecccccCCccccEEEEEcCC-CCEEEEEccC
Confidence            689999 99999999999988      67777754   46688888  9999    9   999999987 9999999987


Q ss_pred             Cc------eeeeecC-----CCCeeEEEEC----CCCCE-EEEecCCCcEEEEEccC------cceee-----ee-----
Q 014475           71 PQ------VEVKSLP-----AEPIKPIAAN----SHGTY-IAGGGQSGDIYMWEVAS------GRLLK-----KW-----  118 (424)
Q Consensus        71 ~~------~~~~~~~-----~~~v~~~~~s----~~~~~-l~~~~~dg~v~iwd~~~------~~~~~-----~~-----  118 (424)
                      ++      ......|     ...|.+++|+    |++++ |++++.||.|++||+.+      ++.+.     .+     
T Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (397)
T 1sq9_A          101 EDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVE  180 (397)
T ss_dssp             CTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEEC
T ss_pred             CcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeec
Confidence            76      3344455     4899999999    99999 99999999999999998      77766     66     


Q ss_pred             --ccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecC---C---cCceeEEEEEEcCcee
Q 014475          119 --HAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTG---H---TLRITDIVIGYGGVSA  190 (424)
Q Consensus       119 --~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~---~---~~~i~~~~~~~~~~~~  190 (424)
                        ..|...|.+++|+|++ ++++++.||.|++||+++           ...+..+..   |   ...|.+++|+|++  .
T Consensus       181 ~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~-----------~~~~~~~~~~~~h~~~~~~i~~i~~~~~~--~  246 (397)
T 1sq9_A          181 SPMTPSQFATSVDISERG-LIATGFNNGTVQISELST-----------LRPLYNFESQHSMINNSNSIRSVKFSPQG--S  246 (397)
T ss_dssp             CSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTT-----------TEEEEEEECCC---CCCCCEEEEEECSST--T
T ss_pred             cccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCC-----------CceeEEEeccccccccCCccceEEECCCC--C
Confidence              4488999999999999 999999999999999965           345566677   8   9999999999998  8


Q ss_pred             EEEEEeCC---CcEEEEecCCCceeeeee--------------cCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCC
Q 014475          191 TIVSASED---RTCKVWSLLKGRLLRNIV--------------FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPS  253 (424)
Q Consensus       191 ~l~~~~~d---~~v~iwd~~~~~~~~~~~--------------~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~  253 (424)
                      +|++++.|   +.|++||+++++.+..+.              +...|.+++|+|++++|++++.||.|++||++..   
T Consensus       247 ~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~---  323 (397)
T 1sq9_A          247 LLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTK---  323 (397)
T ss_dssp             EEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTT---
T ss_pred             EEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCC---
Confidence            99999999   999999999998888776              6789999999999999999999999999999886   


Q ss_pred             CCCcCceeeeeec------cc---------------CcCeEEEEecC-C----------CEEEEeCCCCcEEEEeCCCCc
Q 014475          254 TSSYGMHIIGSLS------DH---------------SKAVTCLAYST-G----------DLLISGSEDGMVRVWDPITHN  301 (424)
Q Consensus       254 ~~~~~~~~~~~~~------~~---------------~~~i~~~~~~~-~----------~~l~t~~~dg~i~iwd~~~~~  301 (424)
                            +.+..+.      +|               ...|++++|+| +          ++|++++.||.|++||+++|+
T Consensus       324 ------~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g~  397 (397)
T 1sq9_A          324 ------ERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAGGK  397 (397)
T ss_dssp             ------EEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC--
T ss_pred             ------ceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcCCCC
Confidence                  5566666      67               99999999999 6          799999999999999998763

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=2.8e-38  Score=283.78  Aligned_cols=278  Identities=22%  Similarity=0.317  Sum_probs=228.9

Q ss_pred             EEEeecCCCCCceEEEeCCCCc-----eEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCceeee-
Q 014475            3 LLIASSSVADTGIGCWDLESGA-----EQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVK-   76 (424)
Q Consensus         3 ~~lat~~~~dg~i~vwd~~~~~-----~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~-   76 (424)
                      .+||||+ .||+|+|||+.+++     +...++   +|...|.+++  |+|+++++++++.| +.|++|+......... 
T Consensus        52 ~~l~S~s-~D~~i~vWd~~~~~~~~~~~~~~l~---~h~~~V~~~~--~s~dg~~l~s~~~d-~~i~~~~~~~~~~~~~~  124 (340)
T 4aow_A           52 DMILSAS-RDKTIIMWKLTRDETNYGIPQRALR---GHSHFVSDVV--ISSDGQFALSGSWD-GTLRLWDLTTGTTTRRF  124 (340)
T ss_dssp             TEEEEEE-TTSCEEEEEECCSSSCSEEEEEEEC---CCSSCEEEEE--ECTTSSEEEEEETT-SEEEEEETTTTEEEEEE
T ss_pred             CEEEEEc-CCCeEEEEECCCCCcccceeeEEEe---CCCCCEEEEE--ECCCCCEEEEEccc-ccceEEeecccceeeee
Confidence            3799999 99999999987654     334444   4567899999  99999999999998 9999999988766544 


Q ss_pred             ecCCCCeeEEEECCCCCEEEEecCCCcEEEEEccCcce-eeeeccccCCeEEEEEccCC--cEEEEeeCCCcEEEEeCCc
Q 014475           77 SLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRL-LKKWHAHYRAVTCLVFSEDG--SFLISGSEDGCVRIWSLLT  153 (424)
Q Consensus        77 ~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~-~~~~~~~~~~i~~~~~~~~~--~~l~s~~~dg~i~iwd~~~  153 (424)
                      ..+...+..+.+++++++|++++.|+.+++||+..... .....+|...+.+++|++++  .++++++.|+.|++||+++
T Consensus       125 ~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~  204 (340)
T 4aow_A          125 VGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLAN  204 (340)
T ss_dssp             ECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTT
T ss_pred             cCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCC
Confidence            45678899999999999999999999999999876544 34557799999999998754  5788999999999999954


Q ss_pred             ccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeeecCcceeEEEECCCCCEE
Q 014475          154 VFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVF  233 (424)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l  233 (424)
                                 ......+.+|...|++++|+|++  ++|++++.|+.|++||+++.+.+..+.+...+.+++|+|++.++
T Consensus       205 -----------~~~~~~~~~h~~~v~~~~~s~~~--~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~  271 (340)
T 4aow_A          205 -----------CKLKTNHIGHTGYLNTVTVSPDG--SLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALCFSPNRYWL  271 (340)
T ss_dssp             -----------TEEEEEECCCSSCEEEEEECTTS--SEEEEEETTCEEEEEETTTTEEEEEEECSSCEEEEEECSSSSEE
T ss_pred             -----------CceeeEecCCCCcEEEEEECCCC--CEEEEEeCCCeEEEEEeccCceeeeecCCceEEeeecCCCCcee
Confidence                       44567788999999999999998  89999999999999999999999999988999999999987655


Q ss_pred             EEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCCCc
Q 014475          234 YAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHN  301 (424)
Q Consensus       234 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~  301 (424)
                       +++.|+.|++||++..................+|...|++++|+| +++|++|+.||.|+|||+++|+
T Consensus       272 -~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~tGt  339 (340)
T 4aow_A          272 -CAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIGT  339 (340)
T ss_dssp             -EEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEEC--
T ss_pred             -eccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCcC
Confidence             566799999999987632211111122234457899999999999 9999999999999999999885

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=1.4e-38  Score=289.41  Aligned_cols=289  Identities=13%  Similarity=0.072  Sum_probs=234.4

Q ss_pred             EEEeecCCCCCceEEEeCCCCc--eEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCceee---ee
Q 014475            3 LLIASSSVADTGIGCWDLESGA--EQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEV---KS   77 (424)
Q Consensus         3 ~~lat~~~~dg~i~vwd~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~---~~   77 (424)
                      .+||+++ .||.|++||+.+++  .+..+..|   ...|.+++  |+|+++++++++.+ |.|++||+.+++...   ..
T Consensus        21 ~~l~~~~-~d~~v~i~~~~~~~~~~~~~~~~h---~~~v~~~~--~~~~~~~l~~~~~d-g~i~vwd~~~~~~~~~~~~~   93 (372)
T 1k8k_C           21 TQIAICP-NNHEVHIYEKSGNKWVQVHELKEH---NGQVTGVD--WAPDSNRIVTCGTD-RNAYVWTLKGRTWKPTLVIL   93 (372)
T ss_dssp             SEEEEEC-SSSEEEEEEEETTEEEEEEEEECC---SSCEEEEE--EETTTTEEEEEETT-SCEEEEEEETTEEEEEEECC
T ss_pred             CEEEEEe-CCCEEEEEeCCCCcEEeeeeecCC---CCcccEEE--EeCCCCEEEEEcCC-CeEEEEECCCCeeeeeEEee
Confidence            3688998 89999999999887  77777654   46788888  99999999999987 999999998876432   24


Q ss_pred             cCCCCeeEEEECCCCCEEEEecCCCcEEEEEccCcce----eeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCc
Q 014475           78 LPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRL----LKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLT  153 (424)
Q Consensus        78 ~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~----~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~  153 (424)
                      .|...|.+++|+|++++|++++.||.|++||++.+..    ......|...|.+++|+|++++|++++.||.|++||++.
T Consensus        94 ~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~  173 (372)
T 1k8k_C           94 RINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYI  173 (372)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCC
T ss_pred             cCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEccc
Confidence            5788999999999999999999999999999988763    233367899999999999999999999999999999753


Q ss_pred             ccchhc-------ccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeee-cCcceeEEE
Q 014475          154 VFEECE-------SQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIA  225 (424)
Q Consensus       154 ~~~~~~-------~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~-~~~~i~~~~  225 (424)
                      ......       ........+..+..|...|.+++|+|++  .+|++++.|+.|++||+++++.+..+. +...+.+++
T Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~  251 (372)
T 1k8k_C          174 KEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANG--SRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVT  251 (372)
T ss_dssp             TTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSS--SEEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEE
T ss_pred             ccccccccccccccccchhhheEecCCCCCeEEEEEECCCC--CEEEEEeCCCEEEEEECCCCceeEEEccCCCCeEEEE
Confidence            211000       0012345667778899999999999998  899999999999999999999988887 677999999


Q ss_pred             ECCCCCEEEEEeCCCcEEEEEcCC--CCCCC--C---------------------CcCceee------eee-cccCcCeE
Q 014475          226 LDPAEHVFYAGSRDGSIYIAALNA--ESPST--S---------------------SYGMHII------GSL-SDHSKAVT  273 (424)
Q Consensus       226 ~~~~~~~l~~~~~dg~i~i~d~~~--~~~~~--~---------------------~~~~~~~------~~~-~~~~~~i~  273 (424)
                      |+|++.+++++ .|+.|++|+++.  +....  .                     .......      ..+ .+|...|+
T Consensus       252 ~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~  330 (372)
T 1k8k_C          252 FITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVS  330 (372)
T ss_dssp             EEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSSCEE
T ss_pred             EecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCccccccccccccCCcc
Confidence            99999988887 899999999987  31000  0                     0000111      223 48999999


Q ss_pred             EEEecC--C---CEEEEeCCCCcEEEEeCCCCc
Q 014475          274 CLAYST--G---DLLISGSEDGMVRVWDPITHN  301 (424)
Q Consensus       274 ~~~~~~--~---~~l~t~~~dg~i~iwd~~~~~  301 (424)
                      +++|.+  +   .+|++|+.||.|++||+++++
T Consensus       331 ~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~~  363 (372)
T 1k8k_C          331 QISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLE  363 (372)
T ss_dssp             EEEEEESTTTSCSEEEEEETTSEEEEEEHHHHH
T ss_pred             eeEEecCCCcceeeEEEecCCCceEEEEecChh
Confidence            999775  5   899999999999999987754

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=7.7e-38  Score=307.39  Aligned_cols=267  Identities=24%  Similarity=0.348  Sum_probs=223.4

Q ss_pred             EEEeecCCCCCceEEEeCCCC-----ceEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCceee-e
Q 014475            3 LLIASSSVADTGIGCWDLESG-----AEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEV-K   76 (424)
Q Consensus         3 ~~lat~~~~dg~i~vwd~~~~-----~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~-~   76 (424)
                      .+|+||+ .||+|+|||+.++     .....+.+   |...|.+++  |+|+++++++++.| |+|++||+.++.... .
T Consensus       396 ~~l~s~s-~D~~i~~W~~~~~~~~~~~~~~~~~~---h~~~v~~v~--~s~~g~~l~sgs~D-g~v~vwd~~~~~~~~~~  468 (694)
T 3dm0_A          396 DIIVSAS-RDKSIILWKLTKDDKAYGVAQRRLTG---HSHFVEDVV--LSSDGQFALSGSWD-GELRLWDLAAGVSTRRF  468 (694)
T ss_dssp             SEEEEEE-TTSEEEEEECCCSTTCSCEEEEEEEC---CSSCEEEEE--ECTTSSEEEEEETT-SEEEEEETTTTEEEEEE
T ss_pred             CEEEEEe-CCCcEEEEEccCCCcccccccceecC---CCCcEEEEE--ECCCCCEEEEEeCC-CcEEEEECCCCcceeEE
Confidence            4799999 9999999999764     33445554   456788888  99999999999998 999999999876553 3


Q ss_pred             ecCCCCeeEEEECCCCCEEEEecCCCcEEEEEccCcceeee---eccccCCeEEEEEccCC--cEEEEeeCCCcEEEEeC
Q 014475           77 SLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKK---WHAHYRAVTCLVFSEDG--SFLISGSEDGCVRIWSL  151 (424)
Q Consensus        77 ~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~---~~~~~~~i~~~~~~~~~--~~l~s~~~dg~i~iwd~  151 (424)
                      ..|...|.+++|+|++++|++|+.|++|++||.........   ..+|...|.+++|+|++  ..+++++.|+.|++||+
T Consensus       469 ~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~  548 (694)
T 3dm0_A          469 VGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNL  548 (694)
T ss_dssp             ECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEET
T ss_pred             eCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEEC
Confidence            56899999999999999999999999999999865433322   24688999999999976  58999999999999999


Q ss_pred             CcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeeecCcceeEEEECCCCC
Q 014475          152 LTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEH  231 (424)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~  231 (424)
                      ++           ......+.+|...|++++|+|++  .+|++++.||.|++||+++++.+..+.+...+.+++|+|++.
T Consensus       549 ~~-----------~~~~~~~~~h~~~v~~v~~spdg--~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~  615 (694)
T 3dm0_A          549 SN-----------CKLRSTLAGHTGYVSTVAVSPDG--SLCASGGKDGVVLLWDLAEGKKLYSLEANSVIHALCFSPNRY  615 (694)
T ss_dssp             TT-----------CCEEEEECCCSSCEEEEEECTTS--SEEEEEETTSBCEEEETTTTEEEECCBCSSCEEEEEECSSSS
T ss_pred             CC-----------CcEEEEEcCCCCCEEEEEEeCCC--CEEEEEeCCCeEEEEECCCCceEEEecCCCcEEEEEEcCCCc
Confidence            54           34567788999999999999998  899999999999999999999998888888999999999998


Q ss_pred             EEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeec-------------------ccCcCeEEEEecC-CCEEEEeCCCCc
Q 014475          232 VFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLS-------------------DHSKAVTCLAYST-GDLLISGSEDGM  291 (424)
Q Consensus       232 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~-------------------~~~~~i~~~~~~~-~~~l~t~~~dg~  291 (424)
                      ++++++ ++.|++||+++...         +..+.                   .+...+++++|+| +++|++|+.||.
T Consensus       616 ~l~~~~-~~~i~iwd~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~  685 (694)
T 3dm0_A          616 WLCAAT-EHGIKIWDLESKSI---------VEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGV  685 (694)
T ss_dssp             EEEEEE-TTEEEEEETTTTEE---------EEEECCCCC----------------CCCCEEEEEECTTSSEEEEEETTSE
T ss_pred             EEEEEc-CCCEEEEECCCCCC---------hhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCCe
Confidence            887766 55699999988632         22221                   1223478999999 999999999999


Q ss_pred             EEEEeCCC
Q 014475          292 VRVWDPIT  299 (424)
Q Consensus       292 i~iwd~~~  299 (424)
                      |++||+..
T Consensus       686 i~iW~i~~  693 (694)
T 3dm0_A          686 IRVWGIGR  693 (694)
T ss_dssp             EEEEEC--
T ss_pred             EEEEeccC
Confidence            99999853

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=8.2e-38  Score=275.09  Aligned_cols=249  Identities=15%  Similarity=0.192  Sum_probs=205.3

Q ss_pred             CCCCceEEecceeecCCCccccCCCCceeEEEEECCCCc---eeeeecCCCCeeEEEECCC--CCEEEEecCCCcEEEEE
Q 014475           34 SPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQ---VEVKSLPAEPIKPIAANSH--GTYIAGGGQSGDIYMWE  108 (424)
Q Consensus        34 ~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~---~~~~~~~~~~v~~~~~s~~--~~~l~~~~~dg~v~iwd  108 (424)
                      +|...|.+++  |+|+|++|++++.| ++|++||+....   ......|.++|.+++|+|+  +++|++|+.||+|++||
T Consensus         7 ~h~~~V~~~~--~s~~g~~las~s~D-~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd   83 (297)
T 2pm7_B            7 AHNEMIHDAV--MDYYGKRMATCSSD-KTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWK   83 (297)
T ss_dssp             SCSSCEEEEE--ECTTSSEEEEEETT-SCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEE
T ss_pred             CCcCceEEEE--ECCCCCEEEEEeCC-CEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEE
Confidence            4567899999  99999999999998 999999997532   2344578999999999874  89999999999999999


Q ss_pred             ccCcc--eeeeeccccCCeEEEEEccC--CcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEE
Q 014475          109 VASGR--LLKKWHAHYRAVTCLVFSED--GSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIG  184 (424)
Q Consensus       109 ~~~~~--~~~~~~~~~~~i~~~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  184 (424)
                      +++++  .+..+.+|...|.+++|+|+  +.+|++++.||.|++||+++..         ......+.+|...|.+++|+
T Consensus        84 ~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~---------~~~~~~~~~h~~~v~~~~~~  154 (297)
T 2pm7_B           84 EENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENG---------TTSPIIIDAHAIGVNSASWA  154 (297)
T ss_dssp             BSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSS---------CBCCEEEECCSSCEEEEEEC
T ss_pred             cCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCC---------ceeeeeeecccCccceEeec
Confidence            98874  55677889999999999997  8899999999999999996521         11134567899999999999


Q ss_pred             EcC-----------ceeEEEEEeCCCcEEEEecCCCc----eeeeee-cCcceeEEEECCCC---CEEEEEeCCCcEEEE
Q 014475          185 YGG-----------VSATIVSASEDRTCKVWSLLKGR----LLRNIV-FPSVIDAIALDPAE---HVFYAGSRDGSIYIA  245 (424)
Q Consensus       185 ~~~-----------~~~~l~~~~~d~~v~iwd~~~~~----~~~~~~-~~~~i~~~~~~~~~---~~l~~~~~dg~i~i~  245 (424)
                      |+.           .+..|++++.|++|++||+++++    ....+. |...|.+++|+|++   .+|++++.|+.|++|
T Consensus       155 p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iW  234 (297)
T 2pm7_B          155 PATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIW  234 (297)
T ss_dssp             CCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEE
T ss_pred             CCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEE
Confidence            863           12689999999999999998765    444554 88899999999984   899999999999999


Q ss_pred             EcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCC
Q 014475          246 ALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPI  298 (424)
Q Consensus       246 d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~  298 (424)
                      |++......    .........|...|.+++|+| +++|++++.||.|++|+..
T Consensus       235 d~~~~~~~~----~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~  284 (297)
T 2pm7_B          235 TQDNEQGPW----KKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN  284 (297)
T ss_dssp             EESSTTSCC----EEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEEC
T ss_pred             EeCCCCCcc----ceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEEC
Confidence            998743110    011111246788999999999 9999999999999999976

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=100.00  E-value=5.3e-38  Score=282.53  Aligned_cols=263  Identities=14%  Similarity=0.193  Sum_probs=223.8

Q ss_pred             eeecCCCCeeEEEECCCCCEEEEecCCCcEEEEEccCc----ceeeeeccccCCeEEEEEcc--CCcEEEEeeCCCcEEE
Q 014475           75 VKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASG----RLLKKWHAHYRAVTCLVFSE--DGSFLISGSEDGCVRI  148 (424)
Q Consensus        75 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~----~~~~~~~~~~~~i~~~~~~~--~~~~l~s~~~dg~i~i  148 (424)
                      ....|.+.|++++|+|++++|++|+.||.|++||+.++    +....+.+|...|.+++|+|  ++++|++++.||.|++
T Consensus         6 ~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~v   85 (351)
T 3f3f_A            6 FDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKL   85 (351)
T ss_dssp             EECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEE
T ss_pred             cCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEE
Confidence            44578999999999999999999999999999999876    45667788999999999999  6999999999999999


Q ss_pred             EeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeee------------
Q 014475          149 WSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV------------  216 (424)
Q Consensus       149 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~------------  216 (424)
                      ||++++......  ........+..|...|.+++|+|+..+.++++++.||.|++||+++++.+..+.            
T Consensus        86 wd~~~~~~~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~  163 (351)
T 3f3f_A           86 WEEDPDQEECSG--RRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPP  163 (351)
T ss_dssp             EEECTTSCTTSS--CSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCC
T ss_pred             EecCCCcccccc--cCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhcccccccccccccccc
Confidence            999764321111  112456778899999999999998212899999999999999999887654432            


Q ss_pred             --cCcceeEEEECCC---CCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-C----CEEEEe
Q 014475          217 --FPSVIDAIALDPA---EHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-G----DLLISG  286 (424)
Q Consensus       217 --~~~~i~~~~~~~~---~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~----~~l~t~  286 (424)
                        +...+.+++|+|+   +..+++++.++.+.+|+.....       ...+..+.+|...|++++|+| +    ++|++|
T Consensus       164 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~-------~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~  236 (351)
T 3f3f_A          164 ANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGK-------LHVAAKLPGHKSLIRSISWAPSIGRWYQLIATG  236 (351)
T ss_dssp             SSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSC-------EEEEEECCCCCSCEEEEEECCCSSCSSEEEEEE
T ss_pred             CCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCc-------eeeeeecCCCCcceeEEEECCCCCCcceEEEEE
Confidence              4567899999997   9999999999999888877653       245677888999999999999 6    799999


Q ss_pred             CCCCcEEEEeCCCC----------------------------------------------cEEEEEeccCCCeeEEEEEe
Q 014475          287 SEDGMVRVWDPITH----------------------------------------------NIVRMFRLAKGPVNNILVVR  320 (424)
Q Consensus       287 ~~dg~i~iwd~~~~----------------------------------------------~~~~~~~~~~~~v~~l~~s~  320 (424)
                      +.||.|++||++++                                              +++..+.+|.++|++++|+|
T Consensus       237 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~  316 (351)
T 3f3f_A          237 CKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNL  316 (351)
T ss_dssp             ETTSCEEEEEEEECC---------------------------------------CCSEEEEEEEEECTTSSCEEEEEECS
T ss_pred             cCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEEcC
Confidence            99999999999875                                              67778889999999999999


Q ss_pred             cCceeeeccCCCceeeccCCCCCCCC
Q 014475          321 RPLYLNLGSFSNPHTSSRRHGSQLPP  346 (424)
Q Consensus       321 ~~~~l~~~~~d~~i~iw~~~~~~~~~  346 (424)
                      ++++|++++.||.|++|++...+...
T Consensus       317 ~~~~l~s~~~dg~v~iw~~~~~~~~~  342 (351)
T 3f3f_A          317 TGTILSSAGDDGKVRLWKATYSNEFK  342 (351)
T ss_dssp             SSCCEEEEETTSCEEEEEECTTSCEE
T ss_pred             CCCEEEEecCCCcEEEEecCcCcchh
Confidence            99999999999999999998765433

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=100.00  E-value=4.1e-38  Score=293.57  Aligned_cols=286  Identities=13%  Similarity=0.121  Sum_probs=226.5

Q ss_pred             CCCceEEecceeecCCCccccCCCCceeEEEEECCCCc------------eeeeecCC------------CCeeEEEECC
Q 014475           35 PPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQ------------VEVKSLPA------------EPIKPIAANS   90 (424)
Q Consensus        35 ~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~------------~~~~~~~~------------~~v~~~~~s~   90 (424)
                      +...|.+++  |+|+|++|++++.| |.|++|++.+++            ......|.            ++|.+++|+|
T Consensus        27 ~~~~V~~v~--~s~~g~~la~g~~d-g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~  103 (447)
T 3dw8_B           27 EADIISTVE--FNHSGELLATGDKG-GRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLP  103 (447)
T ss_dssp             GGGSEEEEE--ECSSSSEEEEEETT-SEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECC
T ss_pred             ccCcEEEEE--ECCCCCEEEEEcCC-CeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcC
Confidence            457899999  99999999999998 999999998765            22334576            8899999999


Q ss_pred             CC--CEEEEecCCCcEEEEEccCccee---------------------------------------ee-eccccCCeEEE
Q 014475           91 HG--TYIAGGGQSGDIYMWEVASGRLL---------------------------------------KK-WHAHYRAVTCL  128 (424)
Q Consensus        91 ~~--~~l~~~~~dg~v~iwd~~~~~~~---------------------------------------~~-~~~~~~~i~~~  128 (424)
                      ++  .+|++++.||.|++||+.++...                                       .. ..+|...|.++
T Consensus       104 ~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~  183 (447)
T 3dw8_B          104 QKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSI  183 (447)
T ss_dssp             CCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEE
T ss_pred             CCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEE
Confidence            98  89999999999999999775432                                       12 36799999999


Q ss_pred             EEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCC
Q 014475          129 VFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLK  208 (424)
Q Consensus       129 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~  208 (424)
                      +|+|++++|++| .||.|++||+++..........   ....+.+|...|.+++|+|++. .+|++++.||.|++||+++
T Consensus       184 ~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~---~~~~~~~~~~~v~~~~~~p~~~-~~l~s~~~dg~i~iwd~~~  258 (447)
T 3dw8_B          184 SINSDYETYLSA-DDLRINLWHLEITDRSFNIVDI---KPANMEELTEVITAAEFHPNSC-NTFVYSSSKGTIRLCDMRA  258 (447)
T ss_dssp             EECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEEC---CCSSGGGCCCCEEEEEECSSCT-TEEEEEETTSCEEEEETTT
T ss_pred             EEcCCCCEEEEe-CCCeEEEEECCCCCceeeeeec---ccccccccCcceEEEEECCCCC-cEEEEEeCCCeEEEEECcC
Confidence            999999999998 7999999999742111000000   0013568999999999999863 6899999999999999999


Q ss_pred             Cce----eeeee-cCc------------ceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcC
Q 014475          209 GRL----LRNIV-FPS------------VIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKA  271 (424)
Q Consensus       209 ~~~----~~~~~-~~~------------~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~  271 (424)
                      ++.    ...+. +..            .|.+++|+|++++|++++. +.|++||++...        .++..+.+|...
T Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~--------~~~~~~~~~~~~  329 (447)
T 3dw8_B          259 SALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMEN--------RPVETYQVHEYL  329 (447)
T ss_dssp             CSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCS--------SCSCCEESCGGG
T ss_pred             CccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCc--------cccceeeccccc
Confidence            886    55555 333            8999999999999999999 999999998732        345556666432


Q ss_pred             ---------------eEEEEecC-CCEEEEeCCCCcEEEEeCCCCcEEEEEec---------------------------
Q 014475          272 ---------------VTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRL---------------------------  308 (424)
Q Consensus       272 ---------------i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~~~~~~~---------------------------  308 (424)
                                     +..++|+| +.+|++|+.||.|++||+.+++.+. +..                           
T Consensus       330 ~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  408 (447)
T 3dw8_B          330 RSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDIT-LEASRENNKPRTVLKPRKVCASGKRKKDEI  408 (447)
T ss_dssp             TTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEE-EECCSTTCCTTCBCCCCCEECSSCCCTTCE
T ss_pred             cccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCccee-eeecccccccccccCCccccccCCcccccc
Confidence                           33489999 9999999999999999999988763 222                           


Q ss_pred             ------cCCCeeEEEEEecCceeeeccCCCceeeccC
Q 014475          309 ------AKGPVNNILVVRRPLYLNLGSFSNPHTSSRR  339 (424)
Q Consensus       309 ------~~~~v~~l~~s~~~~~l~~~~~d~~i~iw~~  339 (424)
                            +...|..++|+|++.+||+++.++ +++|..
T Consensus       409 ~~~~~~~~~~i~~~~~~p~~~~la~~~~~~-~~~~~~  444 (447)
T 3dw8_B          409 SVDSLDFNKKILHTAWHPKENIIAVATTNN-LYIFQD  444 (447)
T ss_dssp             EGGGCCTTSCCCEEEECSSSSEEEEECSSC-EEEEEC
T ss_pred             cccccccCCceeEEEECCCCCEEEEEecce-eeeecc
Confidence                  235788999999999999998876 666654

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=100.00  E-value=1.4e-37  Score=282.15  Aligned_cols=297  Identities=15%  Similarity=0.186  Sum_probs=237.2

Q ss_pred             EEeCCCCceEEEeeCCCCCCCceEEecceeecC---CCccccCCCCceeEEEEECCC-Ccee--eeecCCCCeeEEEECC
Q 014475           17 CWDLESGAEQLRYKSCASPPHGLACVGQRFLAS---SQLREQPSASSGSILYWSWSK-PQVE--VKSLPAEPIKPIAANS   90 (424)
Q Consensus        17 vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~---~~~l~~~~~~~g~i~vwd~~~-~~~~--~~~~~~~~v~~~~~s~   90 (424)
                      .|+....+.+..+   ..|...|.+++  |+|+   |+++++++.| |.|++||+.+ +...  ....|..+|.+++|+|
T Consensus        23 ~~~~~~~~~~~~~---~~h~~~v~~~~--~~~~~~~g~~l~~~~~d-g~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~   96 (368)
T 3mmy_A           23 TDNHNPMKDIEVT---SSPDDSIGCLS--FSPPTLPGNFLIAGSWA-NDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSD   96 (368)
T ss_dssp             CCSSCTTCCEECS---SCCSSCEEEEE--ECCTTSSSEEEEEEETT-SEEEEEEECTTSCEEEEEEEECSSCEEEEEECT
T ss_pred             cCCCCCcceeEec---cCCCCceEEEE--EcCCCCCceEEEEECCC-CcEEEEEcCCCCceeEEEeccccCCEEEEEECc
Confidence            3454555555444   45667899999  9999   5999999988 9999999987 4332  3456899999999999


Q ss_pred             CCCEEEEecCCCcEEEEEccCcceeeeeccccCCeEEEEE--ccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceE
Q 014475           91 HGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVF--SEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYL  168 (424)
Q Consensus        91 ~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~--~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~  168 (424)
                      ++++|++++.||.|++||+++++.+. +..|...|.+++|  +|++++|++++.||.|++||++++           ..+
T Consensus        97 ~~~~l~s~~~dg~v~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~-----------~~~  164 (368)
T 3mmy_A           97 DGSKVFTASCDKTAKMWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSS-----------NPM  164 (368)
T ss_dssp             TSSEEEEEETTSEEEEEETTTTEEEE-EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCS-----------SCS
T ss_pred             CCCEEEEEcCCCcEEEEEcCCCCcee-eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCC-----------cEE
Confidence            99999999999999999999888766 5569999999999  889999999999999999999662           233


Q ss_pred             EeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeee---cCcceeEEEECCCCCE----EEEEeCCCc
Q 014475          169 HSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV---FPSVIDAIALDPAEHV----FYAGSRDGS  241 (424)
Q Consensus       169 ~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~---~~~~i~~~~~~~~~~~----l~~~~~dg~  241 (424)
                      ..+..+. .+.++.+.  .  ..+++++.++.+.+||++.........   ......++++.++...    +++++.||.
T Consensus       165 ~~~~~~~-~~~~~~~~--~--~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~  239 (368)
T 3mmy_A          165 MVLQLPE-RCYCADVI--Y--PMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGR  239 (368)
T ss_dssp             EEEECSS-CEEEEEEE--T--TEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSE
T ss_pred             EEEecCC-CceEEEec--C--CeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCc
Confidence            4444443 44444444  4  578888899999999998765443332   3455666666555444    999999999


Q ss_pred             EEEEEcCCCCCCCCCcCceeeeeecccCc------------CeEEEEecC-CCEEEEeCCCCcEEEEeCCCCcEEEEEec
Q 014475          242 IYIAALNAESPSTSSYGMHIIGSLSDHSK------------AVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRL  308 (424)
Q Consensus       242 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~------------~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~~~~~~~  308 (424)
                      |++||++.....      .....+..|..            +|++++|+| +++|++++.||.|++||+++++++..+..
T Consensus       240 i~i~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~  313 (368)
T 3mmy_A          240 VAIHYINPPNPA------KDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQ  313 (368)
T ss_dssp             EEEEESSCSCHH------HHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCC
T ss_pred             EEEEecCCCCcc------ccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecC
Confidence            999999886320      23344555554            799999999 99999999999999999999999999999


Q ss_pred             cCCCeeEEEEEecCceeeeccCCCceeeccCCCC
Q 014475          309 AKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGS  342 (424)
Q Consensus       309 ~~~~v~~l~~s~~~~~l~~~~~d~~i~iw~~~~~  342 (424)
                      |..+|++++|+|++++|++++.|+..+.|+....
T Consensus       314 ~~~~v~~~~~s~~g~~l~~~s~d~~~~~~~~~~~  347 (368)
T 3mmy_A          314 LDQPISACCFNHNGNIFAYASSYDWSKGHEFYNP  347 (368)
T ss_dssp             CSSCEEEEEECTTSSCEEEEECCCSTTCGGGCCT
T ss_pred             CCCCceEEEECCCCCeEEEEecccccccccccCC
Confidence            9999999999999999999999998777776543

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=1.1e-37  Score=284.65  Aligned_cols=269  Identities=16%  Similarity=0.241  Sum_probs=221.9

Q ss_pred             EEEeecCCCCCceEEEeCCCCceEEEeeCCCCCCCceEEecceeec-CCCccccCCCCceeEEEEECCCCceeeeecC--
Q 014475            3 LLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLA-SSQLREQPSASSGSILYWSWSKPQVEVKSLP--   79 (424)
Q Consensus         3 ~~lat~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~l~~~~~~~g~i~vwd~~~~~~~~~~~~--   79 (424)
                      .+||+|+ .||.|+|||+.+++....+.. .+|...|.+++  |+| +++++++++.| +.|++||+.+........+  
T Consensus        87 ~~l~s~~-~dg~i~iwd~~~~~~~~~~~~-~~h~~~v~~~~--~~~~~~~~l~s~~~d-~~i~iwd~~~~~~~~~~~~~~  161 (383)
T 3ei3_B           87 TTVAVGS-KGGDIILWDYDVQNKTSFIQG-MGPGDAITGMK--FNQFNTNQLFVSSIR-GATTLRDFSGSVIQVFAKTDS  161 (383)
T ss_dssp             TEEEEEE-BTSCEEEEETTSTTCEEEECC-CSTTCBEEEEE--EETTEEEEEEEEETT-TEEEEEETTSCEEEEEECCCC
T ss_pred             CEEEEEc-CCCeEEEEeCCCcccceeeec-CCcCCceeEEE--eCCCCCCEEEEEeCC-CEEEEEECCCCceEEEeccCC
Confidence            4799999 999999999999988877643 34668899999  999 78999999887 9999999997655444333  


Q ss_pred             -CCCeeEEEECCCCCEEEEecCCCcEEEEEccCcceeeeeccccCCeEEEEEccCCc-EEEEeeCCCcEEEEeCCcccch
Q 014475           80 -AEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGS-FLISGSEDGCVRIWSLLTVFEE  157 (424)
Q Consensus        80 -~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~  157 (424)
                       ...|.+++|+|++++|++|+.||.|++||+ +++.+..+..|...|.+++|+|+++ ++++++.|+.|++||+++... 
T Consensus       162 ~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~-  239 (383)
T 3ei3_B          162 WDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKD-  239 (383)
T ss_dssp             SSCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCEEEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCS-
T ss_pred             CCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEEEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCc-
Confidence             478999999999999999999999999998 6778888999999999999999998 999999999999999976321 


Q ss_pred             hcccccccceEEeecCCcCceeEEEEEE-cCceeEEEEEeCCCcEEEEecCCCceeeeee-cC-----------------
Q 014475          158 CESQRASHLYLHSFTGHTLRITDIVIGY-GGVSATIVSASEDRTCKVWSLLKGRLLRNIV-FP-----------------  218 (424)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~-~~-----------------  218 (424)
                            ....+..+ +|...|.+++|+| ++  .+|++++.|+.|++||+++++....+. +.                 
T Consensus       240 ------~~~~~~~~-~~~~~v~~~~~s~~~~--~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~  310 (383)
T 3ei3_B          240 ------KNSYIAEM-PHEKPVNAAYFNPTDS--TKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPM  310 (383)
T ss_dssp             ------TTCEEEEE-ECSSCEEEEEECTTTS--CEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSS
T ss_pred             ------ccceEEEe-cCCCceEEEEEcCCCC--CEEEEEcCCCcEEEEECCCCccccccccccccccccccceEEeccCC
Confidence                  12334444 6999999999999 87  899999999999999999887766554 21                 


Q ss_pred             cceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecc--cCcCeEEEEecC-CCEEEEeCCCCcEEEE
Q 014475          219 SVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSD--HSKAVTCLAYST-GDLLISGSEDGMVRVW  295 (424)
Q Consensus       219 ~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~~~~~-~~~l~t~~~dg~i~iw  295 (424)
                      ..+..++++|++++  +++.|+.|++||+.++         +.+..+.+  |...+..++|+| +.+|++|+ ||.|++|
T Consensus       311 ~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~---------~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~s-d~~i~iw  378 (383)
T 3ei3_B          311 YDLIVAGRYPDDQL--LLNDKRTIDIYDANSG---------GLVHQLRDPNAAGIISLNKFSPTGDVLASGM-GFNILIW  378 (383)
T ss_dssp             SSEEEEECBCCTTT--CTTCCCCEEEEETTTC---------CEEEEECBTTBCSCCCEEEECTTSSEEEEEE-TTEEEEE
T ss_pred             CCceEEEecCCccc--ccCCCCeEEEEecCCC---------ceeeeecCCCCCceEEEEEEecCccEEEEec-CCcEEEE
Confidence            23344556666665  6678999999999886         45666665  567788889999 99999997 9999999


Q ss_pred             eCCC
Q 014475          296 DPIT  299 (424)
Q Consensus       296 d~~~  299 (424)
                      |+++
T Consensus       379 ~~~~  382 (383)
T 3ei3_B          379 NRED  382 (383)
T ss_dssp             ECC-
T ss_pred             ecCC
Confidence            9874

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=7.4e-37  Score=271.11  Aligned_cols=266  Identities=17%  Similarity=0.195  Sum_probs=231.6

Q ss_pred             EEeecCCCCCceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCc----eeeeecC
Q 014475            4 LIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQ----VEVKSLP   79 (424)
Q Consensus         4 ~lat~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~----~~~~~~~   79 (424)
                      +||+++ .||.|++||+.+++....+..|   ...+.+++  |+|+++++++++.+ |.|++|++....    ......|
T Consensus        31 ~l~s~~-~dg~v~vw~~~~~~~~~~~~~~---~~~v~~~~--~~~~~~~l~~~~~d-g~i~~~~~~~~~~~~~~~~~~~~  103 (313)
T 3odt_A           31 KVASVS-RDGTVRLWSKDDQWLGTVVYTG---QGFLNSVC--YDSEKELLLFGGKD-TMINGVPLFATSGEDPLYTLIGH  103 (313)
T ss_dssp             EEEEEE-TTSEEEEEEESSSEEEEEEEEC---SSCEEEEE--EETTTTEEEEEETT-SCEEEEETTCCTTSCC-CEECCC
T ss_pred             EEEEEE-cCCcEEEEECCCCEEEEEeecC---CccEEEEE--ECCCCCEEEEecCC-CeEEEEEeeecCCCCcccchhhc
Confidence            689999 9999999999999888888765   46788888  99999999999998 999999987643    2334568


Q ss_pred             CCCeeEEEECCCCCEEEEecCCCcEEEEEccCcceeeeeccccCCeEEEEEcc-CCcEEEEeeCCCcEEEEeCCcccchh
Q 014475           80 AEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSE-DGSFLISGSEDGCVRIWSLLTVFEEC  158 (424)
Q Consensus        80 ~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~  158 (424)
                      ..+|.+++|  +++++++++.||.|++||  .++....+..|...+.++.|.| +++++++++.||.|++||...     
T Consensus       104 ~~~i~~~~~--~~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~-----  174 (313)
T 3odt_A          104 QGNVCSLSF--QDGVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQNDK-----  174 (313)
T ss_dssp             SSCEEEEEE--ETTEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEETTE-----
T ss_pred             ccCEEEEEe--cCCEEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEecCc-----
Confidence            899999999  678999999999999999  6777888889999999999998 899999999999999999532     


Q ss_pred             cccccccceEEeecC-CcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeee-cCcceeEEEECCCCCEEEEE
Q 014475          159 ESQRASHLYLHSFTG-HTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYAG  236 (424)
Q Consensus       159 ~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~  236 (424)
                              ....+.. |...+.+++|++++  . +++++.|+.|++||+++++.+..+. |...+.+++|+|++ .++++
T Consensus       175 --------~~~~~~~~~~~~i~~~~~~~~~--~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~  242 (313)
T 3odt_A          175 --------VIKTFSGIHNDVVRHLAVVDDG--H-FISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNG-DIVSC  242 (313)
T ss_dssp             --------EEEEECSSCSSCEEEEEEEETT--E-EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTS-CEEEE
T ss_pred             --------eEEEEeccCcccEEEEEEcCCC--e-EEEccCCCeEEEEECCchhhhhhhhcCCceEEEEEEecCC-CEEEE
Confidence                    3444555 89999999999997  5 9999999999999999999998887 88999999999999 58999


Q ss_pred             eCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCCCcEEEEEe
Q 014475          237 SRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFR  307 (424)
Q Consensus       237 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~~~~~~  307 (424)
                      +.||.|++||++++         +....+..|...|.+++|+| +. +++++.||.|++||+++++.+....
T Consensus       243 ~~dg~v~iwd~~~~---------~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~iw~~~~~~~~~~~~  304 (313)
T 3odt_A          243 GEDRTVRIWSKENG---------SLKQVITLPAISIWSVDCMSNGD-IIVGSSDNLVRIFSQEKSRWASEDE  304 (313)
T ss_dssp             ETTSEEEEECTTTC---------CEEEEEECSSSCEEEEEECTTSC-EEEEETTSCEEEEESCGGGCCC---
T ss_pred             ecCCEEEEEECCCC---------ceeEEEeccCceEEEEEEccCCC-EEEEeCCCcEEEEeCCCCceeehhh
Confidence            99999999999886         56777888999999999999 65 7779999999999999887665544

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=100.00  E-value=1.6e-37  Score=285.86  Aligned_cols=320  Identities=15%  Similarity=0.136  Sum_probs=230.3

Q ss_pred             EEEeecCCCCCceEEEeCCCCceEEEeeCC----------CCCCCceEEecceeec-CCCccccCCCCceeEEEEECCCC
Q 014475            3 LLIASSSVADTGIGCWDLESGAEQLRYKSC----------ASPPHGLACVGQRFLA-SSQLREQPSASSGSILYWSWSKP   71 (424)
Q Consensus         3 ~~lat~~~~dg~i~vwd~~~~~~~~~~~~~----------~~~~~~v~~~~~~~~~-~~~~l~~~~~~~g~i~vwd~~~~   71 (424)
                      .+||+++ .||.|+|||+.+++....+...          ..|...|.+++  |+| +++++++++.+ |.|++||+.++
T Consensus        57 ~~l~~~~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--~~~~~~~~l~s~~~d-~~i~iwd~~~~  132 (408)
T 4a11_B           57 RYMLSGG-SDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQ--WYPHDTGMFTSSSFD-KTLKVWDTNTL  132 (408)
T ss_dssp             CEEEEEE-TTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEE--ECTTCTTCEEEEETT-SEEEEEETTTT
T ss_pred             CEEEEEc-CCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEE--EccCCCcEEEEEeCC-CeEEEeeCCCC
Confidence            4789999 9999999999988766554311          24678899999  999 77788888887 99999999998


Q ss_pred             ceeeeecCCCCeeEEEECCC---CCEEEEecCCCcEEEEEccCcceeeeeccccCCeEEEEEccCCc-EEEEeeCCCcEE
Q 014475           72 QVEVKSLPAEPIKPIAANSH---GTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGS-FLISGSEDGCVR  147 (424)
Q Consensus        72 ~~~~~~~~~~~v~~~~~s~~---~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~s~~~dg~i~  147 (424)
                      +......+...+.++.|+|.   +.++++++.+|.|++||+++++.+..+..|...|.+++|+|+++ .+++++.||.|+
T Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~  212 (408)
T 4a11_B          133 QTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVK  212 (408)
T ss_dssp             EEEEEEECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEE
T ss_pred             ccceeccCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEE
Confidence            88777778899999999984   45999999999999999999999999999999999999999988 589999999999


Q ss_pred             EEeCCcccchhccc-----ccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeeec-----
Q 014475          148 IWSLLTVFEECESQ-----RASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVF-----  217 (424)
Q Consensus       148 iwd~~~~~~~~~~~-----~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~-----  217 (424)
                      +||+++........     ............|...|.+++|+|++  .+|++++.||.|++||+++++.......     
T Consensus       213 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~  290 (408)
T 4a11_B          213 LWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDG--LHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNN  290 (408)
T ss_dssp             EEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTS--SEEEEEETTSCEEEEETTTCCBCCCCCCCCCCC
T ss_pred             EEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCC--CEEEEecCCCeEEEEECCCCccceecccccccc
Confidence            99997643211110     01111122336789999999999988  8999999999999999998876554431     


Q ss_pred             -CcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEE
Q 014475          218 -PSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVW  295 (424)
Q Consensus       218 -~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iw  295 (424)
                       ...+........+..+++++.++.|++||+.++         ..+..+.+|...|++++|+| +.+|++++.||.|++|
T Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~---------~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw  361 (408)
T 4a11_B          291 SKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSG---------EQITMLKGHYKTVDCCVFQSNFQELYSGSRDCNILAW  361 (408)
T ss_dssp             CSSCCCCEECCSSSSCEEEEEETTEEEEEETTTC---------CEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEE
T ss_pred             ccccceeEEecCCCceEEEEecCCEEEEEECcCC---------cceeeeccCCCeEEEEEEcCCCCEEEEECCCCeEEEE
Confidence             122223333345666777888999999999886         56778889999999999999 9999999999999999


Q ss_pred             eCCCCcEEEEEeccCCCeeEEEEEe-cCceeeeccCCCceeeccCC
Q 014475          296 DPITHNIVRMFRLAKGPVNNILVVR-RPLYLNLGSFSNPHTSSRRH  340 (424)
Q Consensus       296 d~~~~~~~~~~~~~~~~v~~l~~s~-~~~~l~~~~~d~~i~iw~~~  340 (424)
                      |+++++++.....+...   ..+.+ ....+.+.+.|+.+++|+.+
T Consensus       362 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~W~~~  404 (408)
T 4a11_B          362 VPSLYEPVPDDDETTTK---SQLNPAFEDAWSSSDEEGGTSAWSHP  404 (408)
T ss_dssp             EECC------------------------------------------
T ss_pred             eCCCCCccCCCCceEec---cccccccceeecccCccCceeecCCc
Confidence            99999887766543322   23333 33445677789999999865

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=100.00  E-value=1.1e-37  Score=286.47  Aligned_cols=276  Identities=14%  Similarity=0.175  Sum_probs=229.3

Q ss_pred             eecCCCccccCCCCceeEEEEECCCCc-----eeeeecCCCCeeEEEECC-CCCEEEEecCCCcEEEEEccCc-------
Q 014475           46 FLASSQLREQPSASSGSILYWSWSKPQ-----VEVKSLPAEPIKPIAANS-HGTYIAGGGQSGDIYMWEVASG-------  112 (424)
Q Consensus        46 ~~~~~~~l~~~~~~~g~i~vwd~~~~~-----~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~v~iwd~~~~-------  112 (424)
                      ++|+...+++.+..+|.|++|++....     ......|.++|.+++|+| ++++|++|+.||.|++||+.++       
T Consensus        42 ~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~  121 (402)
T 2aq5_A           42 VNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLR  121 (402)
T ss_dssp             ECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBC
T ss_pred             ECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccC
Confidence            777776666544434999999997542     223456899999999999 9999999999999999999988       


Q ss_pred             ceeeeeccccCCeEEEEEccCC-cEEEEeeCCCcEEEEeCCcccchhcccccccceEEee--cCCcCceeEEEEEEcCce
Q 014475          113 RLLKKWHAHYRAVTCLVFSEDG-SFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSF--TGHTLRITDIVIGYGGVS  189 (424)
Q Consensus       113 ~~~~~~~~~~~~i~~~~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~  189 (424)
                      +.+..+.+|...|.+++|+|++ ++|++++.||.|++||+++           ...+..+  ..|...|.+++|+|++  
T Consensus       122 ~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~-----------~~~~~~~~~~~~~~~v~~~~~~~~~--  188 (402)
T 2aq5_A          122 EPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGT-----------GAAVLTLGPDVHPDTIYSVDWSRDG--  188 (402)
T ss_dssp             SCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTT-----------TEEEEEECTTTCCSCEEEEEECTTS--
T ss_pred             CceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCC-----------CCccEEEecCCCCCceEEEEECCCC--
Confidence            5678889999999999999998 6999999999999999965           3345666  7899999999999988  


Q ss_pred             eEEEEEeCCCcEEEEecCCCceeeee-e-cCcc-eeEEEECCCCCEEEEE---eCCCcEEEEEcCCCCCCCCCcCceeee
Q 014475          190 ATIVSASEDRTCKVWSLLKGRLLRNI-V-FPSV-IDAIALDPAEHVFYAG---SRDGSIYIAALNAESPSTSSYGMHIIG  263 (424)
Q Consensus       190 ~~l~~~~~d~~v~iwd~~~~~~~~~~-~-~~~~-i~~~~~~~~~~~l~~~---~~dg~i~i~d~~~~~~~~~~~~~~~~~  263 (424)
                      ..|++++.|+.|++||+++++.+..+ . +... +.+++|+|++.++++|   +.|+.|++||++.....       ...
T Consensus       189 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~-------~~~  261 (402)
T 2aq5_A          189 ALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEP-------LSL  261 (402)
T ss_dssp             SCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSC-------SEE
T ss_pred             CEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCC-------ceE
Confidence            89999999999999999999988887 3 5444 8999999999999999   78999999999886421       111


Q ss_pred             eecccCcCeEEEEecC-CCEEE-EeCCCCcEEEEeCCCCcE-EEEEec--cCCCeeEEEEEecCceeeeccCCCceeecc
Q 014475          264 SLSDHSKAVTCLAYST-GDLLI-SGSEDGMVRVWDPITHNI-VRMFRL--AKGPVNNILVVRRPLYLNLGSFSNPHTSSR  338 (424)
Q Consensus       264 ~~~~~~~~i~~~~~~~-~~~l~-t~~~dg~i~iwd~~~~~~-~~~~~~--~~~~v~~l~~s~~~~~l~~~~~d~~i~iw~  338 (424)
                      ....|...+.+++|+| +++|+ +|+.||.|++||+.+++. +..+..  |..+|.+++|+|++.++++  .++.+++|+
T Consensus       262 ~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s--~~~~~~~~~  339 (402)
T 2aq5_A          262 QELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVN--KCEIARFYK  339 (402)
T ss_dssp             EECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGG--GTEEEEEEE
T ss_pred             EeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccceEEeccccccee--cceeEEEEE
Confidence            2235778899999999 88775 566899999999999884 555544  4589999999999998876  466999999


Q ss_pred             CCCCC
Q 014475          339 RHGSQ  343 (424)
Q Consensus       339 ~~~~~  343 (424)
                      +.++.
T Consensus       340 l~~~~  344 (402)
T 2aq5_A          340 LHERK  344 (402)
T ss_dssp             EETTE
T ss_pred             cCCCc
Confidence            98754

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=1e-36  Score=283.98  Aligned_cols=283  Identities=17%  Similarity=0.275  Sum_probs=245.9

Q ss_pred             eEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCceeee-ecCCCCeeEEEECCCCCEEEEecCCCc
Q 014475           25 EQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVK-SLPAEPIKPIAANSHGTYIAGGGQSGD  103 (424)
Q Consensus        25 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~dg~  103 (424)
                      ....+.+|...+  +.+    +.++++++++++.| |.|++||+.+++.... ..|..+|.+++|+  ++++++|+.||.
T Consensus       110 ~~~~l~~h~~~v--~~~----~~~~g~~l~sg~~d-g~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~  180 (445)
T 2ovr_B          110 SPKVLKGHDDHV--ITC----LQFCGNRIVSGSDD-NTLKVWSAVTGKCLRTLVGHTGGVWSSQMR--DNIIISGSTDRT  180 (445)
T ss_dssp             CCEEEECSTTSC--EEE----EEEETTEEEEEETT-SCEEEEETTTCCEEEECCCCSSCEEEEEEE--TTEEEEEETTSC
T ss_pred             eeEEecccCCCc--EEE----EEEcCCEEEEEECC-CcEEEEECCCCcEEEEEcCCCCCEEEEEec--CCEEEEEeCCCe
Confidence            445566665432  344    55679999999987 9999999998876543 4688999999997  679999999999


Q ss_pred             EEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEE
Q 014475          104 IYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVI  183 (424)
Q Consensus       104 v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  183 (424)
                      |++||+.+++.+..+.+|...|.++.|+  ++.+++|+.||.|++||+++           ...+..+.+|...|.++.+
T Consensus       181 i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~-----------~~~~~~~~~~~~~v~~~~~  247 (445)
T 2ovr_B          181 LKVWNAETGECIHTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIET-----------GQCLHVLMGHVAAVRCVQY  247 (445)
T ss_dssp             EEEEETTTTEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSS-----------CCEEEEEECCSSCEEEEEE
T ss_pred             EEEEECCcCcEEEEECCCCCcEEEEEec--CCEEEEEeCCCEEEEEECCC-----------CcEEEEEcCCcccEEEEEE
Confidence            9999999999999999999999999996  56899999999999999965           3456677889999999998


Q ss_pred             EEcCceeEEEEEeCCCcEEEEecCCCceeeeee-cCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceee
Q 014475          184 GYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHII  262 (424)
Q Consensus       184 ~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~  262 (424)
                        ++  ..+++++.||.|++||+++++.+..+. +...+.++++  ++.++++++.||.|++||++++         +.+
T Consensus       248 --~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~---------~~~  312 (445)
T 2ovr_B          248 --DG--RRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETG---------NCI  312 (445)
T ss_dssp             --CS--SCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTC---------CEE
T ss_pred             --CC--CEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCC---------CEE
Confidence              44  789999999999999999999888887 7889999999  8899999999999999999986         567


Q ss_pred             eeecccCcCeEEEEecCCCEEEEeCCCCcEEEEeCCCCcEEEEEec---cCCCeeEEEEEecCceeeeccCCCceeeccC
Q 014475          263 GSLSDHSKAVTCLAYSTGDLLISGSEDGMVRVWDPITHNIVRMFRL---AKGPVNNILVVRRPLYLNLGSFSNPHTSSRR  339 (424)
Q Consensus       263 ~~~~~~~~~i~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~---~~~~v~~l~~s~~~~~l~~~~~d~~i~iw~~  339 (424)
                      ..+.+|...+.++.++ ++++++|+.||.|++||+++++++..+..   |..+|.+++|+  +.+|++|+.||.|++|++
T Consensus       313 ~~~~~~~~~v~~~~~~-~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~  389 (445)
T 2ovr_B          313 HTLTGHQSLTSGMELK-DNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDL  389 (445)
T ss_dssp             EEECCCCSCEEEEEEE-TTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEET
T ss_pred             EEEcCCcccEEEEEEe-CCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC--CCEEEEEeCCCeEEEEEC
Confidence            7788999999998876 68999999999999999999999999986   78899999995  679999999999999999


Q ss_pred             CCCCCCCC
Q 014475          340 HGSQLPPP  347 (424)
Q Consensus       340 ~~~~~~~~  347 (424)
                      .+++....
T Consensus       390 ~~~~~~~~  397 (445)
T 2ovr_B          390 KTGEFIRN  397 (445)
T ss_dssp             TTCCEEEE
T ss_pred             CCCceeee
Confidence            98765443

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=100.00  E-value=2.3e-36  Score=268.63  Aligned_cols=275  Identities=18%  Similarity=0.287  Sum_probs=232.4

Q ss_pred             EEEeecCCCCCceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCceeee-ecCCC
Q 014475            3 LLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVK-SLPAE   81 (424)
Q Consensus         3 ~~lat~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~-~~~~~   81 (424)
                      ++||+|.  |++|+|||+++|+.++.++.+ .|...|.+++  |+|+++++++++.| |+|++||+++++.... ..|..
T Consensus        37 ~~lAvg~--D~tV~iWd~~tg~~~~~~~~~-~~~~~V~~v~--~~~~~~~l~sgs~D-g~v~iw~~~~~~~~~~~~~h~~  110 (318)
T 4ggc_A           37 NVLAVAL--DNSVYLWSASSGDILQLLQME-QPGEYISSVA--WIKEGNYLAVGTSS-AEVQLWDVQQQKRLRNMTSHSA  110 (318)
T ss_dssp             SEEEEEE--TTEEEEEETTTCCEEEEEECC-STTCCEEEEE--ECTTSSEEEEEETT-SEEEEEETTTTEEEEEEECCSS
T ss_pred             CEEEEEe--CCEEEEEECCCCCEEEEEEec-CCCCeEEEEE--ECCCCCEEEEEECC-CcEEEeecCCceeEEEecCccc
Confidence            3577765  999999999999999888654 4667899999  99999999999998 9999999998876533 45677


Q ss_pred             CeeEEEECCCCCEEEEecCCCcEEEEEccCc-ceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcc
Q 014475           82 PIKPIAANSHGTYIAGGGQSGDIYMWEVASG-RLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECES  160 (424)
Q Consensus        82 ~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~  160 (424)
                      .+.++.+  ++..+++++.++.+++|+.... ..+..+.+|...+.++.+.++++++++++.||.|++||++++..    
T Consensus       111 ~~~~~~~--~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~----  184 (318)
T 4ggc_A          111 RVGSLSW--NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEG----  184 (318)
T ss_dssp             CEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTT----
T ss_pred             eEEEeec--CCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCcc----
Confidence            7766554  5789999999999999998876 45567789999999999999999999999999999999976432    


Q ss_pred             cccccceEEeecCCcCceeEEEEEEcCcee-EEEEEeCCCcEEEEecCCCceeeeeecCcceeEEEECCCCCEEEEEe--
Q 014475          161 QRASHLYLHSFTGHTLRITDIVIGYGGVSA-TIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGS--  237 (424)
Q Consensus       161 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--  237 (424)
                         ..........+...|.++.+.+.+..- .+++++.++.|++||.+.........+...+..++++|++..+++++  
T Consensus       185 ---~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~sg~  261 (318)
T 4ggc_A          185 ---GWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGF  261 (318)
T ss_dssp             ---BSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEECSSCEEEEEEETTTTEEEEEECT
T ss_pred             ---cccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccccccceeeeeeeeecccccceEEEEEc
Confidence               222344566788899999999876422 23466788999999999999888888999999999999999888765  


Q ss_pred             CCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCCCc
Q 014475          238 RDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHN  301 (424)
Q Consensus       238 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~  301 (424)
                      .|+.|++||++++         +++..+.+|...|++++|+| +++|++|+.||+|+|||+.+..
T Consensus       262 ~d~~i~iwd~~~~---------~~~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~~d  317 (318)
T 4ggc_A          262 AQNQLVIWKYPTM---------AKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFELD  317 (318)
T ss_dssp             TTCCEEEEETTTC---------CEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCCC
T ss_pred             CCCEEEEEECCCC---------cEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCCC
Confidence            7999999999986         66788999999999999999 9999999999999999997654

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=1.3e-37  Score=281.18  Aligned_cols=280  Identities=13%  Similarity=0.199  Sum_probs=227.2

Q ss_pred             EEEeecCCC---CCceEEEeCCCCceEEEeeCCCCCCCceEEecceeecC---CCccccCCCCceeEEEEECCCCc-e-e
Q 014475            3 LLIASSSVA---DTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLAS---SQLREQPSASSGSILYWSWSKPQ-V-E   74 (424)
Q Consensus         3 ~~lat~~~~---dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~---~~~l~~~~~~~g~i~vwd~~~~~-~-~   74 (424)
                      .++++++ .   ||.|+|||+.+++.......  .|...|.+++  |+|+   ++++++++.+ |.|++||+.+++ . .
T Consensus        32 ~l~~~~s-~~~~d~~v~iw~~~~~~~~~~~~~--~~~~~v~~~~--~~~~~~~~~~l~~~~~d-g~i~iwd~~~~~~~~~  105 (357)
T 3i2n_A           32 KFVTMGN-FARGTGVIQLYEIQHGDLKLLREI--EKAKPIKCGT--FGATSLQQRYLATGDFG-GNLHIWNLEAPEMPVY  105 (357)
T ss_dssp             EEEEEEC---CCCEEEEEEEECSSSEEEEEEE--EESSCEEEEE--CTTCCTTTCCEEEEETT-SCEEEECTTSCSSCSE
T ss_pred             eEEEecC-ccCCCcEEEEEeCCCCcccceeee--cccCcEEEEE--EcCCCCCCceEEEecCC-CeEEEEeCCCCCccEE
Confidence            5678887 7   99999999999887654432  2457789999  9999   6999999887 999999999776 3 3


Q ss_pred             eeecCCCCeeEEE------ECCCCCEEEEecCCCcEEEEEccCcc-eeeeeccccC----CeEEEE----EccCCcEEEE
Q 014475           75 VKSLPAEPIKPIA------ANSHGTYIAGGGQSGDIYMWEVASGR-LLKKWHAHYR----AVTCLV----FSEDGSFLIS  139 (424)
Q Consensus        75 ~~~~~~~~v~~~~------~s~~~~~l~~~~~dg~v~iwd~~~~~-~~~~~~~~~~----~i~~~~----~~~~~~~l~s  139 (424)
                      ....|...|.+++      |+|++++|++++.||.|++||+++++ .+..+..|.+    .+.++.    |+|+++++++
T Consensus       106 ~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~  185 (357)
T 3i2n_A          106 SVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCA  185 (357)
T ss_dssp             EECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEE
T ss_pred             EEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEE
Confidence            4456889999995      57899999999999999999999887 6777766554    899998    6789999999


Q ss_pred             eeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEE---cCceeEEEEEeCCCcEEEEecCCCceeeee-
Q 014475          140 GSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGY---GGVSATIVSASEDRTCKVWSLLKGRLLRNI-  215 (424)
Q Consensus       140 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~-  215 (424)
                      ++.||.|++||++++.           . .....|...|.+++|+|   ++  ..+++++.||.|++||+++++....+ 
T Consensus       186 ~~~d~~i~i~d~~~~~-----------~-~~~~~~~~~v~~~~~~~~~~~~--~~l~~~~~dg~i~i~d~~~~~~~~~~~  251 (357)
T 3i2n_A          186 GYDNGDIKLFDLRNMA-----------L-RWETNIKNGVCSLEFDRKDISM--NKLVATSLEGKFHVFDMRTQHPTKGFA  251 (357)
T ss_dssp             EETTSEEEEEETTTTE-----------E-EEEEECSSCEEEEEESCSSSSC--CEEEEEESTTEEEEEEEEEEETTTEEE
T ss_pred             EccCCeEEEEECccCc-----------e-eeecCCCCceEEEEcCCCCCCC--CEEEEECCCCeEEEEeCcCCCccccee
Confidence            9999999999996621           1 23456889999999999   66  89999999999999999987765544 


Q ss_pred             -----ecCcceeEEEECCCCC-EEEEEeCCCcEEEEEcCCCCCCCC----------CcCceeeeeecccCcCeEEEEecC
Q 014475          216 -----VFPSVIDAIALDPAEH-VFYAGSRDGSIYIAALNAESPSTS----------SYGMHIIGSLSDHSKAVTCLAYST  279 (424)
Q Consensus       216 -----~~~~~i~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~----------~~~~~~~~~~~~~~~~i~~~~~~~  279 (424)
                           .+...|.+++|+|++. ++++++.||.|++||++.......          ......+..+.+|...|++++|+|
T Consensus       252 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~  331 (357)
T 3i2n_A          252 SVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSP  331 (357)
T ss_dssp             EEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECS
T ss_pred             eeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcC
Confidence                 3788999999999998 899999999999999987543211          011246778889999999999999


Q ss_pred             -CCEEE-EeCCCCcEEEEeCCCCcE
Q 014475          280 -GDLLI-SGSEDGMVRVWDPITHNI  302 (424)
Q Consensus       280 -~~~l~-t~~~dg~i~iwd~~~~~~  302 (424)
                       +++|+ +++.||.|++||+.+.+.
T Consensus       332 ~~~~l~~s~~~d~~i~iw~~~~~~~  356 (357)
T 3i2n_A          332 DKRGLCVCSSFDQTVRVLIVTKLNK  356 (357)
T ss_dssp             SSTTEEEEEETTSEEEEEEECC---
T ss_pred             CCCeEEEEecCCCcEEEEECCCccc
Confidence             88887 899999999999987654

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=6.8e-38  Score=290.79  Aligned_cols=275  Identities=16%  Similarity=0.204  Sum_probs=215.4

Q ss_pred             EEEeecCCCCCceEEEeCCCCceEEEeeCCCCCCCceEEecceeec-CCCccccCCCCceeEEEEECCCCceeeeec---
Q 014475            3 LLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLA-SSQLREQPSASSGSILYWSWSKPQVEVKSL---   78 (424)
Q Consensus         3 ~~lat~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~l~~~~~~~g~i~vwd~~~~~~~~~~~---   78 (424)
                      .+||+|+ .||+|+|||+.+++....+. ..+|...|.+++  |+| ++++|++++.| |+|++||+++........   
T Consensus       133 ~~lasGs-~dg~i~lWd~~~~~~~~~~~-~~gH~~~V~~l~--f~p~~~~~l~s~s~D-~~v~iwd~~~~~~~~~~~~~~  207 (435)
T 4e54_B          133 STVAVGS-KGGDIMLWNFGIKDKPTFIK-GIGAGGSITGLK--FNPLNTNQFYASSME-GTTRLQDFKGNILRVFASSDT  207 (435)
T ss_dssp             TCEEEEE-TTSCEEEECSSCCSCCEEEC-CCSSSCCCCEEE--ECSSCTTEEEEECSS-SCEEEEETTSCEEEEEECCSS
T ss_pred             CEEEEEe-CCCEEEEEECCCCCceeEEE-ccCCCCCEEEEE--EeCCCCCEEEEEeCC-CEEEEeeccCCceeEEeccCC
Confidence            3699999 99999999998877554443 334667788988  998 68899999988 999999998776544333   


Q ss_pred             CCCCeeEEEECCCCCEEEEecCCCcEEEEEccCcceeeeeccccCCeEEEEEccCCc-EEEEeeCCCcEEEEeCCcccch
Q 014475           79 PAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGS-FLISGSEDGCVRIWSLLTVFEE  157 (424)
Q Consensus        79 ~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~  157 (424)
                      +...+.+++|+|++++|++|+.||.|++||++ ++.+..+.+|...|.+++|+|+++ ++++++.|+.|++||+++... 
T Consensus       208 ~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~-~~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~-  285 (435)
T 4e54_B          208 INIWFCSLDVSASSRMVVTGDNVGNVILLNMD-GKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRG-  285 (435)
T ss_dssp             CSCCCCCEEEETTTTEEEEECSSSBEEEEESS-SCBCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCS-
T ss_pred             CCccEEEEEECCCCCEEEEEeCCCcEeeeccC-cceeEEEecccceEEeeeecCCCceEEEEecCcceeeEEecccccc-
Confidence            24468899999999999999999999999985 566778899999999999999875 788999999999999976321 


Q ss_pred             hcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeee-cC------cceeEEEECCCC
Q 014475          158 CESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-FP------SVIDAIALDPAE  230 (424)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~-~~------~~i~~~~~~~~~  230 (424)
                             ........+|...|++++|+|++  .+|++++.||.|++||+++++....+. +.      ..+....|+|++
T Consensus       286 -------~~~~~~~~~h~~~v~~~~~spdg--~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (435)
T 4e54_B          286 -------KASFLYSLPHRHPVNAACFSPDG--ARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRY  356 (435)
T ss_dssp             -------SSCCSBCCBCSSCEEECCBCTTS--SEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEECSSS
T ss_pred             -------cceEEEeeeccccccceeECCCC--CeeEEEcCCCEEEEEECCCCccceEEecccccccccceeEEEEEcCCC
Confidence                   11223346799999999999998  899999999999999999887766554 22      123455677777


Q ss_pred             CEEEEEe------------CCCcEEEEEcCCCCCCCCCcCceeeee-ecccCcCeEEE-EecC-CCEEEEeCCCCcEEEE
Q 014475          231 HVFYAGS------------RDGSIYIAALNAESPSTSSYGMHIIGS-LSDHSKAVTCL-AYST-GDLLISGSEDGMVRVW  295 (424)
Q Consensus       231 ~~l~~~~------------~dg~i~i~d~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~-~~~~-~~~l~t~~~dg~i~iw  295 (424)
                      ..++++.            .++.|++||..++.         .+.. ..+|...|.++ +|+| +.+|++|+ |+.|+||
T Consensus       357 ~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~---------~~~~l~~~~~~~v~s~~~fspdg~~lasg~-d~~i~iW  426 (435)
T 4e54_B          357 NLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGK---------MMCQLYDPESSGISSLNEFNPMGDTLASAM-GYHILIW  426 (435)
T ss_dssp             SCEEEECCCCTTSCCSSTTCCCCEEEECSSSCC---------EEEEECCSSCCCCCCEEEECTTSSCEEEEC-SSEEEEC
T ss_pred             CEEEEEEcCCCCeEEEEecCCCEEEEEECCCCc---------EEEEEeCCCCCcEEEEEEECCCCCEEEEEc-CCcEEEE
Confidence            7777664            23579999998873         3444 44688888887 6999 89999886 8899999


Q ss_pred             eCCCCcEE
Q 014475          296 DPITHNIV  303 (424)
Q Consensus       296 d~~~~~~~  303 (424)
                      |+++++..
T Consensus       427 ~~~~gk~r  434 (435)
T 4e54_B          427 SQQEARTR  434 (435)
T ss_dssp             CCC-----
T ss_pred             ECCcCeee
Confidence            99988753

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=2.8e-38  Score=288.07  Aligned_cols=253  Identities=14%  Similarity=0.148  Sum_probs=209.3

Q ss_pred             eecCCCCeeEEEECCCCCEEEEecCCCcEEEEEccCc--ceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCc
Q 014475           76 KSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASG--RLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLT  153 (424)
Q Consensus        76 ~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~--~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~  153 (424)
                      ...+.++|++++|+|++++|++|+.||.|++||+.++  +.+..+.+|...|.+++|+|++++|++++.||.|++||+.+
T Consensus         7 ~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~   86 (377)
T 3dwl_C            7 LHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRP   86 (377)
T ss_dssp             EEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC----
T ss_pred             EecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCC
Confidence            3446789999999999999999999999999999988  78888999999999999999999999999999999999976


Q ss_pred             ccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCce---eeeee--cCcceeEEEECC
Q 014475          154 VFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRL---LRNIV--FPSVIDAIALDP  228 (424)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~---~~~~~--~~~~i~~~~~~~  228 (424)
                      +.        .......+..|...|.+++|+|++  +.|++++.|+.|++||+++++.   ...+.  |...|.+++|+|
T Consensus        87 ~~--------~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~  156 (377)
T 3dwl_C           87 DG--------TWKQTLVLLRLNRAATFVRWSPNE--DKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHP  156 (377)
T ss_dssp             ----------CCCCEEECCCCSSCEEEEECCTTS--SCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECT
T ss_pred             CC--------ceeeeeEecccCCceEEEEECCCC--CEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcC
Confidence            32        123456677899999999999988  8999999999999999998873   55554  788999999999


Q ss_pred             CCCEEEEEeCCCcEEEEEcCCCCCCCCC---------cCceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCC
Q 014475          229 AEHVFYAGSRDGSIYIAALNAESPSTSS---------YGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPI  298 (424)
Q Consensus       229 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~---------~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~  298 (424)
                      ++++|++++.|+.|++||++........         ....++..+ +|...|++++|+| +++|++++.||.|++||+.
T Consensus       157 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~  235 (377)
T 3dwl_C          157 NNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPS  235 (377)
T ss_dssp             TSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTTEEC-CEEC
T ss_pred             CCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCcEEEEECC
Confidence            9999999999999999999743321110         012445556 8999999999999 9999999999999999999


Q ss_pred             CCcE----EEEEeccCCCeeEEEEEecCceeeeccCCCceeeccC
Q 014475          299 THNI----VRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRR  339 (424)
Q Consensus       299 ~~~~----~~~~~~~~~~v~~l~~s~~~~~l~~~~~d~~i~iw~~  339 (424)
                      +++.    +..+..|..+|.+++|+|++++|++++.++.+.+|..
T Consensus       236 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~  280 (377)
T 3dwl_C          236 APEQPPRALITVKLSQLPLRSLLWANESAIVAAGYNYSPILLQGN  280 (377)
T ss_dssp             STTSCEEECCCEECSSSCEEEEEEEETTEEEEEESSSSEEEECCC
T ss_pred             CCCCcceeeEeecCCCCceEEEEEcCCCCEEEEEcCCcEEEEEeC
Confidence            9987    8889999999999999999999999987777744443

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.7e-37  Score=280.55  Aligned_cols=255  Identities=18%  Similarity=0.184  Sum_probs=217.8

Q ss_pred             eeecCCCCeeEEEECCCCCEEEEecCCCcEEEEEcc--CcceeeeeccccCCeEEEEEccC--CcEEEEeeCCCcEEEEe
Q 014475           75 VKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVA--SGRLLKKWHAHYRAVTCLVFSED--GSFLISGSEDGCVRIWS  150 (424)
Q Consensus        75 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~--~~~~~~~~~~~~~~i~~~~~~~~--~~~l~s~~~dg~i~iwd  150 (424)
                      ....|.++|++++|+|++++|++|+.||.|++||+.  +++.+..+.+|...|++++|+++  +++|++++.||.|++||
T Consensus         6 ~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd   85 (379)
T 3jrp_A            6 IANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWK   85 (379)
T ss_dssp             CEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEE
T ss_pred             EecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEE
Confidence            446789999999999999999999999999999998  66777888999999999999976  89999999999999999


Q ss_pred             CCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeee--e-ecCcceeEEEEC
Q 014475          151 LLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRN--I-VFPSVIDAIALD  227 (424)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~--~-~~~~~i~~~~~~  227 (424)
                      +++         ........+..|...|.+++|+|+..+..+++++.|+.|++||++++.....  + .+...|.+++|+
T Consensus        86 ~~~---------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~  156 (379)
T 3jrp_A           86 EEN---------GRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWA  156 (379)
T ss_dssp             EET---------TEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEEC
T ss_pred             cCC---------CceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEc
Confidence            965         2223566778899999999999982228999999999999999988743332  2 378899999999


Q ss_pred             C-------------CCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecCC----CEEEEeCCCC
Q 014475          228 P-------------AEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTG----DLLISGSEDG  290 (424)
Q Consensus       228 ~-------------~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~----~~l~t~~~dg  290 (424)
                      |             ++.++++++.||.|++||++.....     ......+.+|...|.+++|+|.    .+|++++.||
T Consensus       157 ~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-----~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg  231 (379)
T 3jrp_A          157 PATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQT-----YVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDR  231 (379)
T ss_dssp             CCC----------CTTCEEEEEETTSCEEEEEEETTTTE-----EEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTS
T ss_pred             CccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcc-----eeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCC
Confidence            9             6999999999999999999875421     2455678889999999999993    7899999999


Q ss_pred             cEEEEeCCCCc---EEEEE--eccCCCeeEEEEEecCceeeeccCCCceeeccCCCCC
Q 014475          291 MVRVWDPITHN---IVRMF--RLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGSQ  343 (424)
Q Consensus       291 ~i~iwd~~~~~---~~~~~--~~~~~~v~~l~~s~~~~~l~~~~~d~~i~iw~~~~~~  343 (424)
                      .|++||++++.   ....+  ..|...|++++|+|++++|++++.||.|++|++....
T Consensus       232 ~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~  289 (379)
T 3jrp_A          232 TCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEG  289 (379)
T ss_dssp             CEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEETT
T ss_pred             EEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCCCC
Confidence            99999999874   22222  3478899999999999999999999999999998543

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=7e-38  Score=278.01  Aligned_cols=249  Identities=16%  Similarity=0.187  Sum_probs=203.6

Q ss_pred             CCCCceEEecceeecCCCccccCCCCceeEEEEECCCCce---eeeecCCCCeeEEEECC--CCCEEEEecCCCcEEEEE
Q 014475           34 SPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQV---EVKSLPAEPIKPIAANS--HGTYIAGGGQSGDIYMWE  108 (424)
Q Consensus        34 ~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~---~~~~~~~~~v~~~~~s~--~~~~l~~~~~dg~v~iwd  108 (424)
                      +|...|.+++  |+|+|++|++++.| ++|++||+.++..   .....|.++|.+++|+|  ++++|++|+.|++|++||
T Consensus        11 ~H~~~V~~v~--~s~~g~~lasgs~D-~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd   87 (316)
T 3bg1_A           11 SHEDMIHDAQ--MDYYGTRLATCSSD-RSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWR   87 (316)
T ss_dssp             ---CCEEEEE--ECGGGCEEEEEETT-TEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEEC
T ss_pred             cccCeEEEee--EcCCCCEEEEEeCC-CeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEE
Confidence            4667899999  99999999999998 9999999987643   23456899999999986  489999999999999999


Q ss_pred             ccCcc--eeeeeccccCCeEEEEEccC--CcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEE
Q 014475          109 VASGR--LLKKWHAHYRAVTCLVFSED--GSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIG  184 (424)
Q Consensus       109 ~~~~~--~~~~~~~~~~~i~~~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  184 (424)
                      +++++  ....+.+|...|.+++|+|+  +.+|++|+.||.|++||+++..        .......+.+|...+.+++|+
T Consensus        88 ~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~--------~~~~~~~~~~h~~~v~~~~~~  159 (316)
T 3bg1_A           88 EENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEG--------QWEVKKINNAHTIGCNAVSWA  159 (316)
T ss_dssp             CSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSS--------CEEECCBTTSSSSCBCCCEEC
T ss_pred             CCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCC--------CcceeeeeccccCCcceEEEc
Confidence            98874  56677889999999999997  7899999999999999986521        111234557899999999999


Q ss_pred             EcCc---------------eeEEEEEeCCCcEEEEecCCC---ceeeeee-cCcceeEEEECCCC----CEEEEEeCCCc
Q 014475          185 YGGV---------------SATIVSASEDRTCKVWSLLKG---RLLRNIV-FPSVIDAIALDPAE----HVFYAGSRDGS  241 (424)
Q Consensus       185 ~~~~---------------~~~l~~~~~d~~v~iwd~~~~---~~~~~~~-~~~~i~~~~~~~~~----~~l~~~~~dg~  241 (424)
                      |+..               +.+|++++.|+.|++||++..   ++...+. |...|.+++|+|++    .+|++++.|++
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~  239 (316)
T 3bg1_A          160 PAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGR  239 (316)
T ss_dssp             CCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCE
T ss_pred             cccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCe
Confidence            8731               268999999999999999755   3444554 88899999999986    88999999999


Q ss_pred             EEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCC
Q 014475          242 IYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPI  298 (424)
Q Consensus       242 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~  298 (424)
                      |++|+++......     .....+..|...|.+++|+| +++|++++.|+.|++|+..
T Consensus       240 v~iw~~~~~~~~~-----~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~  292 (316)
T 3bg1_A          240 VFIWTCDDASSNT-----WSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKES  292 (316)
T ss_dssp             EEEEECSSTTCCC-----CBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEEEC
T ss_pred             EEEEEccCccccc-----hhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEEC
Confidence            9999998632100     11223456889999999999 9999999999999999976

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.9e-37  Score=285.52  Aligned_cols=286  Identities=13%  Similarity=0.157  Sum_probs=226.9

Q ss_pred             eecCCCccccCCCCceeEEEEECCCCceeee-ecCCCCeeEEEECC-CCCEEEEecCCCcEEEEEccC---cce---eee
Q 014475           46 FLASSQLREQPSASSGSILYWSWSKPQVEVK-SLPAEPIKPIAANS-HGTYIAGGGQSGDIYMWEVAS---GRL---LKK  117 (424)
Q Consensus        46 ~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~-~~~~~~v~~~~~s~-~~~~l~~~~~dg~v~iwd~~~---~~~---~~~  117 (424)
                      |+|+++.++++.       .|+......... ..|.++|++++|+| ++++|++|+.||.|++||+.+   +..   ...
T Consensus        35 f~~~~~~~~~~~-------~w~~~g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~  107 (437)
T 3gre_A           35 FGPIQEIVRSPN-------MGNLRGKLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLT  107 (437)
T ss_dssp             GCCCCCCCCCCC-------GGGCCCCEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEE
T ss_pred             cCCccccccccc-------cccccceEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeee
Confidence            788888877765       377554444334 56889999999999 999999999999999999977   432   222


Q ss_pred             eccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEee--cC--CcCceeEEEEEEcCceeEEE
Q 014475          118 WHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSF--TG--HTLRITDIVIGYGGVSATIV  193 (424)
Q Consensus       118 ~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~--~~--~~~~i~~~~~~~~~~~~~l~  193 (424)
                      + .|...|.+++|+|++++|++++.||.|++||++...............+..+  ..  +...+.++.+....++..++
T Consensus       108 ~-~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  186 (437)
T 3gre_A          108 Y-DCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLV  186 (437)
T ss_dssp             E-ECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEE
T ss_pred             c-cCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEE
Confidence            2 5899999999999999999999999999999953111000000011122222  22  56778888866544449999


Q ss_pred             EEeCCCcEEEEecCCCceeeeee---cCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeec-ccC
Q 014475          194 SASEDRTCKVWSLLKGRLLRNIV---FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLS-DHS  269 (424)
Q Consensus       194 ~~~~d~~v~iwd~~~~~~~~~~~---~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~-~~~  269 (424)
                      +++.|+.|++||+++++.+..+.   |...|.+++|+|++.+|++|+.||.|++||++.+         .++..+. .|.
T Consensus       187 ~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~---------~~~~~~~~~~~  257 (437)
T 3gre_A          187 ALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFN---------VLIRSWSFGDH  257 (437)
T ss_dssp             EEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTT---------EEEEEEBCTTC
T ss_pred             EEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCc---------cEEEEEecCCC
Confidence            99999999999999999988887   5789999999999999999999999999999985         5566654 788


Q ss_pred             cCeEEEEecC-----CCEEEEeCCCCcEEEEeCCCCcEEEEEecc--------------------------CCCeeEEEE
Q 014475          270 KAVTCLAYST-----GDLLISGSEDGMVRVWDPITHNIVRMFRLA--------------------------KGPVNNILV  318 (424)
Q Consensus       270 ~~i~~~~~~~-----~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~--------------------------~~~v~~l~~  318 (424)
                      .+|++++|+|     +.+|++|+.||.|++||+++++++..+.+|                          ...|++++|
T Consensus       258 ~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~  337 (437)
T 3gre_A          258 APITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISV  337 (437)
T ss_dssp             EEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEE
T ss_pred             CceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEE
Confidence            8999996664     559999999999999999999998888744                          456888999


Q ss_pred             EecCceeeeccCCCceeeccCCCCCCCCCcc
Q 014475          319 VRRPLYLNLGSFSNPHTSSRRHGSQLPPPLD  349 (424)
Q Consensus       319 s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~  349 (424)
                      + ++++|++|+.|+.|++|++.+.+....+.
T Consensus       338 ~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~  367 (437)
T 3gre_A          338 S-NDKILLTDEATSSIVMFSLNELSSSKAVI  367 (437)
T ss_dssp             E-TTEEEEEEGGGTEEEEEETTCGGGCEEEE
T ss_pred             C-CceEEEecCCCCeEEEEECCCcccceEEe
Confidence            9 78999999999999999999877654443

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=100.00  E-value=3e-36  Score=279.84  Aligned_cols=286  Identities=20%  Similarity=0.337  Sum_probs=226.5

Q ss_pred             EEEeecCCCCCceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCceeee-ecCCC
Q 014475            3 LLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVK-SLPAE   81 (424)
Q Consensus         3 ~~lat~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~-~~~~~   81 (424)
                      .+|++|+ .||+|++||+.+++....+.+|.   ..|.+++  |  +++.+++++.| |.|++||+.+++.... ..|..
T Consensus       144 ~~l~~g~-~dg~i~iwd~~~~~~~~~~~~h~---~~v~~l~--~--~~~~l~sg~~d-g~i~vwd~~~~~~~~~~~~h~~  214 (435)
T 1p22_A          144 QKIVSGL-RDNTIKIWDKNTLECKRILTGHT---GSVLCLQ--Y--DERVIITGSSD-STVRVWDVNTGEMLNTLIHHCE  214 (435)
T ss_dssp             SEEEEEE-SSSCEEEEESSSCCEEEEECCCS---SCEEEEE--C--CSSEEEEEETT-SCEEEEESSSCCEEEEECCCCS
T ss_pred             CEEEEEe-CCCeEEEEeCCCCeEEEEEcCCC---CcEEEEE--E--CCCEEEEEcCC-CeEEEEECCCCcEEEEEcCCCC
Confidence            3689999 99999999999999998887654   5688877  6  88899999988 9999999998876543 45889


Q ss_pred             CeeEEEECCCCCEEEEecCCCcEEEEEccCccee---eeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchh
Q 014475           82 PIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLL---KKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEEC  158 (424)
Q Consensus        82 ~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~---~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~  158 (424)
                      .|.+++|++  .++++|+.||.|++||+.+++..   ..+.+|...|.+++|  +++++++|+.||.|++||+++     
T Consensus       215 ~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~~-----  285 (435)
T 1p22_A          215 AVLHLRFNN--GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTST-----  285 (435)
T ss_dssp             CEEEEECCT--TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTT-----
T ss_pred             cEEEEEEcC--CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCc-----
Confidence            999999974  59999999999999999988765   667889999999999  678999999999999999965     


Q ss_pred             cccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeee-cCcceeEEEECCCCCEEEEEe
Q 014475          159 ESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYAGS  237 (424)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~  237 (424)
                            ...+..+.+|...|.++.+.  +  ..+++++.||.|++||+++++++..+. |...+.++++  ++.++++|+
T Consensus       286 ------~~~~~~~~~~~~~v~~~~~~--~--~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~--~~~~l~sg~  353 (435)
T 1p22_A          286 ------CEFVRTLNGHKRGIACLQYR--D--RLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSGA  353 (435)
T ss_dssp             ------CCEEEEEECCSSCEEEEEEE--T--TEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEC--CSSEEEEEE
T ss_pred             ------CcEEEEEcCCCCcEEEEEeC--C--CEEEEEeCCCeEEEEECCCCCEEEEEeCCcCcEEEEEe--cCCEEEEEe
Confidence                  34567788999999999883  4  799999999999999999999988887 8889999999  788999999


Q ss_pred             CCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecCCCEEEEeCCCCcEEEEeCCCCcEEEEEeccCCCeeEEE
Q 014475          238 RDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTGDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNIL  317 (424)
Q Consensus       238 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~  317 (424)
                      .||.|++||++.............+..+.+|...|.+++|+ +.+|++|+.||.|++||+.+........ ...+..++.
T Consensus       354 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~-~~~l~s~s~Dg~i~iwd~~~~~~~~~~~-~~~~~~~~~  431 (435)
T 1p22_A          354 YDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFD-EFQIVSSSHDDTILIWDFLNDPAAQAEP-PRSPSRTYT  431 (435)
T ss_dssp             TTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEEC-SSCEEECCSSSEEEEEC---------------------
T ss_pred             CCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEeC-CCEEEEEeCCCEEEEEECCCCCCcccCC-CCCCcccee
Confidence            99999999997764322222223677888999999999994 7789999999999999998876555443 234555555


Q ss_pred             EEe
Q 014475          318 VVR  320 (424)
Q Consensus       318 ~s~  320 (424)
                      |.+
T Consensus       432 ~~~  434 (435)
T 1p22_A          432 YIS  434 (435)
T ss_dssp             ---
T ss_pred             eec
Confidence            543

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=6.3e-36  Score=270.53  Aligned_cols=270  Identities=13%  Similarity=0.097  Sum_probs=204.9

Q ss_pred             EEEeecCCCCC-------ceEEEeCCCCceE--------EEeeCCCCCCCceEEecceeec---------CCCccccCCC
Q 014475            3 LLIASSSVADT-------GIGCWDLESGAEQ--------LRYKSCASPPHGLACVGQRFLA---------SSQLREQPSA   58 (424)
Q Consensus         3 ~~lat~~~~dg-------~i~vwd~~~~~~~--------~~~~~~~~~~~~v~~~~~~~~~---------~~~~l~~~~~   58 (424)
                      .+||+|+ .|.       .|++|++..+...        ..+ ....+...+.+++  +..         ++..+++++.
T Consensus        27 ~~l~sGG-g~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~-~l~~~~~~v~s~~--~~~~~~~~g~~~~~~~l~s~~~  102 (365)
T 4h5i_A           27 TLLVAGG-GGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEF-ALEDNDDSPTAID--ASKGIILVGCNENSTKITQGKG  102 (365)
T ss_dssp             EEEEEEE-CCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEE-ECCTTSCCCCEEE--EETTEEEEECCCCHHHHHHTSC
T ss_pred             cEEEEEC-CCccccCCCCEEEEEEEcCCCcceeeeeeeeeEE-EccCCCCceEEEE--eCCCEEEEEECCCccEEEEecC
Confidence            4678876 433       4999998765421        111 1233445566655  432         2334445555


Q ss_pred             CceeEEEEECCCCceeee----------ecCCCCeeEEEECCCCCEEEE--ecCCCcEEEEEccCcceeeeeccccCCeE
Q 014475           59 SSGSILYWSWSKPQVEVK----------SLPAEPIKPIAANSHGTYIAG--GGQSGDIYMWEVASGRLLKKWHAHYRAVT  126 (424)
Q Consensus        59 ~~g~i~vwd~~~~~~~~~----------~~~~~~v~~~~~s~~~~~l~~--~~~dg~v~iwd~~~~~~~~~~~~~~~~i~  126 (424)
                      + +.+++|++........          ..+...+.+++|||||+++++  ++.|++|+|||+++++++..+. |...|.
T Consensus       103 d-~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~-~~~~V~  180 (365)
T 4h5i_A          103 N-KHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEIE-TRGEVK  180 (365)
T ss_dssp             C-CCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEEE-CSSCCC
T ss_pred             C-CcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEeC-CCCceE
Confidence            5 8999999876542211          113456899999999999765  4578999999999999988886 778899


Q ss_pred             EEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCC----cEE
Q 014475          127 CLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDR----TCK  202 (424)
Q Consensus       127 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~----~v~  202 (424)
                      +++|+|+++++++++.+ .+++|+..++         ..........|...|.+++|+|++  ..+++++.|+    .++
T Consensus       181 ~v~fspdg~~l~s~s~~-~~~~~~~~~~---------~~~~~~~~~~~~~~v~~v~fspdg--~~l~~~s~d~~~~~~i~  248 (365)
T 4h5i_A          181 DLHFSTDGKVVAYITGS-SLEVISTVTG---------SCIARKTDFDKNWSLSKINFIADD--TVLIAASLKKGKGIVLT  248 (365)
T ss_dssp             EEEECTTSSEEEEECSS-CEEEEETTTC---------CEEEEECCCCTTEEEEEEEEEETT--EEEEEEEESSSCCEEEE
T ss_pred             EEEEccCCceEEeccce-eEEEEEeccC---------cceeeeecCCCCCCEEEEEEcCCC--CEEEEEecCCcceeEEe
Confidence            99999999999999865 5666766542         222334456788999999999999  8999998887    688


Q ss_pred             EEecCCCcee----eeee-cCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeee-ecccCcCeEEEE
Q 014475          203 VWSLLKGRLL----RNIV-FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGS-LSDHSKAVTCLA  276 (424)
Q Consensus       203 iwd~~~~~~~----~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~  276 (424)
                      +||+......    ..+. +...|++++|+|++++|++|+.|+.|++||++++         +++.. +.+|..+|++++
T Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~---------~~~~~~~~gH~~~V~~v~  319 (365)
T 4h5i_A          249 KISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDL---------SMSKIFKQAHSFAITEVT  319 (365)
T ss_dssp             EEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTT---------EEEEEETTSSSSCEEEEE
T ss_pred             ecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCC---------cEEEEecCcccCCEEEEE
Confidence            8998766532    2222 6788999999999999999999999999999986         55655 578999999999


Q ss_pred             ecC-CCEEEEeCCCCcEEEEeCCC
Q 014475          277 YST-GDLLISGSEDGMVRVWDPIT  299 (424)
Q Consensus       277 ~~~-~~~l~t~~~dg~i~iwd~~~  299 (424)
                      |+| +++|++|+.|++|+|||+..
T Consensus       320 fSpdg~~laS~S~D~tvrvw~ip~  343 (365)
T 4h5i_A          320 ISPDSTYVASVSAANTIHIIKLPL  343 (365)
T ss_dssp             ECTTSCEEEEEETTSEEEEEECCT
T ss_pred             ECCCCCEEEEEeCCCeEEEEEcCC
Confidence            999 99999999999999999864

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.1e-36  Score=272.98  Aligned_cols=258  Identities=14%  Similarity=0.173  Sum_probs=213.3

Q ss_pred             ceEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCc--ee-eeecCCCCeeEEEECCC--CCEEEEe
Q 014475           24 AEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQ--VE-VKSLPAEPIKPIAANSH--GTYIAGG   98 (424)
Q Consensus        24 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~--~~-~~~~~~~~v~~~~~s~~--~~~l~~~   98 (424)
                      +.+..+.+|   ...|.+++  |+|+++++++++.| |.|++||+....  .. ....|..+|.+++|+|+  +++|++|
T Consensus         2 ~~~~~~~~h---~~~v~~~~--~s~~~~~l~~~~~d-g~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~   75 (379)
T 3jrp_A            2 SMVVIANAH---NELIHDAV--LDYYGKRLATCSSD-KTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASC   75 (379)
T ss_dssp             ---CCEEEC---CCCEEEEE--ECSSSSEEEEEETT-SCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEE
T ss_pred             CccEEecCC---cccEEEEE--EcCCCCEEEEEECC-CcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEe
Confidence            444555554   46789999  99999999999987 999999997443  22 33458899999999987  9999999


Q ss_pred             cCCCcEEEEEccCcc--eeeeeccccCCeEEEEEccC--CcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCC
Q 014475           99 GQSGDIYMWEVASGR--LLKKWHAHYRAVTCLVFSED--GSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGH  174 (424)
Q Consensus        99 ~~dg~v~iwd~~~~~--~~~~~~~~~~~i~~~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  174 (424)
                      +.||.|++||+.+++  .+..+..|...|.+++|+|+  +++|++++.||.|++||+++.         .......+..|
T Consensus        76 ~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~---------~~~~~~~~~~~  146 (379)
T 3jrp_A           76 SYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKEN---------GTTSPIIIDAH  146 (379)
T ss_dssp             ETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTT---------SCCCEEEEECC
T ss_pred             ccCCEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCC---------CceeeEEecCC
Confidence            999999999999987  67778889999999999998  999999999999999999762         22344566789


Q ss_pred             cCceeEEEEEE-------------cCceeEEEEEeCCCcEEEEecCCCcee----eeee-cCcceeEEEECCC---CCEE
Q 014475          175 TLRITDIVIGY-------------GGVSATIVSASEDRTCKVWSLLKGRLL----RNIV-FPSVIDAIALDPA---EHVF  233 (424)
Q Consensus       175 ~~~i~~~~~~~-------------~~~~~~l~~~~~d~~v~iwd~~~~~~~----~~~~-~~~~i~~~~~~~~---~~~l  233 (424)
                      ...|.+++|+|             ++  ..+++++.|+.|++||+++++..    ..+. |...|.+++|+|+   +.+|
T Consensus       147 ~~~v~~~~~~~~~~~~~~~~~~~~~~--~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l  224 (379)
T 3jrp_A          147 AIGVNSASWAPATIEEDGEHNGTKES--RKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYL  224 (379)
T ss_dssp             TTCEEEEEECCCC----------CTT--CEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEE
T ss_pred             CCceEEEEEcCccccccccccCCCCC--CEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeE
Confidence            99999999999             45  89999999999999999876533    3333 7889999999999   8999


Q ss_pred             EEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCCCcE
Q 014475          234 YAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNI  302 (424)
Q Consensus       234 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~  302 (424)
                      ++++.||.|++||++......    .........|...|++++|+| +++|++++.||.|++|++..+..
T Consensus       225 ~s~~~dg~i~iwd~~~~~~~~----~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~  290 (379)
T 3jrp_A          225 ASVSQDRTCIIWTQDNEQGPW----KKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEGK  290 (379)
T ss_dssp             EEEETTSCEEEEEESSTTSCC----EEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEETTE
T ss_pred             EEEeCCCEEEEEeCCCCCccc----eeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCCCCc
Confidence            999999999999998864211    123333445889999999999 99999999999999999985543

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.2e-37  Score=292.70  Aligned_cols=269  Identities=13%  Similarity=0.035  Sum_probs=204.4

Q ss_pred             CceEEecceeecCC---------CccccCCCCceeEEEEECCCCceeeeecCCCCeeEEEECCCCCEEEEecCCCcEEEE
Q 014475           37 HGLACVGQRFLASS---------QLREQPSASSGSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMW  107 (424)
Q Consensus        37 ~~v~~~~~~~~~~~---------~~l~~~~~~~g~i~vwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw  107 (424)
                      ..|.+++  |+|++         ++||+++.+ +..                      -..+|+++.+++++.|++|+||
T Consensus       134 ~~V~sv~--w~p~~~~~~~~~~~~~LAv~~~~-~~~----------------------~~~~~~~~~laS~s~D~tI~iW  188 (524)
T 2j04_B          134 GLVTDIA--WLNIEENTDIGKDIQYLAVAVSQ-YMD----------------------EPLNEHLEMFDKEKHSSCIQIF  188 (524)
T ss_dssp             C--CCCS--CEEECCCCSSCSSEEEEEEEEEC-----------------------------------------CEEEEEE
T ss_pred             CceeEEE--ecccCCCCccCcCCeEEEEEEec-ccC----------------------CccchhhhhhccCCCCceEEEE
Confidence            5677888  99987         788887765 210                      0137899999999999999999


Q ss_pred             EccCccee----eeeccccCCeEEEEEccC------CcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCc
Q 014475          108 EVASGRLL----KKWHAHYRAVTCLVFSED------GSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLR  177 (424)
Q Consensus       108 d~~~~~~~----~~~~~~~~~i~~~~~~~~------~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (424)
                      |+.+++..    ..+..|.+.|.+++|+|+      +.+|++++.||+|++||+.++............+...+.+|...
T Consensus       189 d~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~  268 (524)
T 2j04_B          189 KMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSL  268 (524)
T ss_dssp             EEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTC
T ss_pred             EccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCC
Confidence            99887643    345667889999999996      57999999999999999976421100000011223467889999


Q ss_pred             eeEEEEEEcCceeEEEEEeCCCcEEEEecCCCc-eeeeee-cCcceeEE--EECCCC-CEEEEEeCCCcEEEEEcCCCCC
Q 014475          178 ITDIVIGYGGVSATIVSASEDRTCKVWSLLKGR-LLRNIV-FPSVIDAI--ALDPAE-HVFYAGSRDGSIYIAALNAESP  252 (424)
Q Consensus       178 i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~-~~~~~~-~~~~i~~~--~~~~~~-~~l~~~~~dg~i~i~d~~~~~~  252 (424)
                      |++++|+++   ..|++|+.||+|++||+++++ +...+. |...|.++  +++|++ .+|++++.|++|++||+++.  
T Consensus       269 v~sv~~s~~---~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~--  343 (524)
T 2j04_B          269 ITTFDFLSP---TTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDI--  343 (524)
T ss_dssp             EEEEEESSS---SEEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGH--
T ss_pred             EEEEEecCC---CeEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCC--
Confidence            999999875   479999999999999999764 334444 88999999  578887 89999999999999999885  


Q ss_pred             CCCCcCceeeeeecccCc--CeEEEEecC-CCEEEEeCCCCcEEEEeCCCCcEEEEEeccCCCeeEEEEEecCceeeecc
Q 014475          253 STSSYGMHIIGSLSDHSK--AVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGS  329 (424)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~--~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~  329 (424)
                             +....+.+|..  .|.+++|+| +..+++++.|++|++||++++.++.++.+|.++|++++|+|++++|++|+
T Consensus       344 -------~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs  416 (524)
T 2j04_B          344 -------ATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPMVLAGS  416 (524)
T ss_dssp             -------HHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCBCEEEE
T ss_pred             -------CcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeecCCCceEEEEeCCCCCeEEEEE
Confidence                   33444555643  588999999 88999999999999999999999899999999999999999999999999


Q ss_pred             CCCceeeccCCCC
Q 014475          330 FSNPHTSSRRHGS  342 (424)
Q Consensus       330 ~d~~i~iw~~~~~  342 (424)
                      .||+|++|+....
T Consensus       417 ~Dgtv~lwd~~~~  429 (524)
T 2j04_B          417 ADGSLIITNAARR  429 (524)
T ss_dssp             TTTEEECCBSCSS
T ss_pred             CCCEEEEEechHh
Confidence            9999999998754

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=100.00  E-value=9.2e-35  Score=266.12  Aligned_cols=310  Identities=13%  Similarity=0.103  Sum_probs=248.3

Q ss_pred             eEEEeecCCCCCceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCceeeeecCCC
Q 014475            2 ELLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSLPAE   81 (424)
Q Consensus         2 e~~lat~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~~~~~~   81 (424)
                      +.++++++ .|+.|++||+.+++.+..+..+.    .+.+++  |+|+++.+++++..++.|++||..+++......+..
T Consensus         2 ~~l~vs~~-~d~~v~v~d~~~~~~~~~~~~~~----~~~~~~--~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~   74 (391)
T 1l0q_A            2 TFAYIANS-ESDNISVIDVTSNKVTATIPVGS----NPMGAV--ISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS   74 (391)
T ss_dssp             EEEEEEET-TTTEEEEEETTTTEEEEEEECSS----SEEEEE--ECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS
T ss_pred             CEEEEEcC-CCCEEEEEECCCCeEEEEeecCC----CcceEE--ECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCC
Confidence            46788899 99999999999999998887553    478888  999999885554334999999999888776666667


Q ss_pred             CeeEEEECCCCCEEEE-ecCCCcEEEEEccCcceeeeeccccCCeEEEEEccCCcEE-EEeeCCCcEEEEeCCcccchhc
Q 014475           82 PIKPIAANSHGTYIAG-GGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFL-ISGSEDGCVRIWSLLTVFEECE  159 (424)
Q Consensus        82 ~v~~~~~s~~~~~l~~-~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l-~s~~~dg~i~iwd~~~~~~~~~  159 (424)
                      .+.+++|+|++++|++ +..++.|++||+.+++.+..+..+ ..+.+++|+|+++.+ ++++.++.|++||+.++     
T Consensus        75 ~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~-----  148 (391)
T 1l0q_A           75 SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSPDGKKLYVTNNGDKTVSVINTVTK-----  148 (391)
T ss_dssp             SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTT-----
T ss_pred             CccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCC-----
Confidence            9999999999998754 556799999999999888877754 568999999999977 68888999999999652     


Q ss_pred             ccccccceEEeecCCcCceeEEEEEEcCceeEE-EEEeCCCcEEEEecCCCceeeeeecCcceeEEEECCCCCEEEEEe-
Q 014475          160 SQRASHLYLHSFTGHTLRITDIVIGYGGVSATI-VSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGS-  237 (424)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l-~~~~~d~~v~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-  237 (424)
                            .....+..+ ..+.+++|+|++  +.+ ++++.++.|++||+++++....+.+...+.+++|+|+++++++++ 
T Consensus       149 ------~~~~~~~~~-~~~~~~~~~~dg--~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~  219 (391)
T 1l0q_A          149 ------AVINTVSVG-RSPKGIAVTPDG--TKVYVANFDSMSISVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNV  219 (391)
T ss_dssp             ------EEEEEEECC-SSEEEEEECTTS--SEEEEEETTTTEEEEEETTTTEEEEEEECSSEEEEEEECTTSSEEEEEEE
T ss_pred             ------cEEEEEecC-CCcceEEECCCC--CEEEEEeCCCCEEEEEECCCCeEEEEEecCCCccceEECCCCCEEEEEec
Confidence                  234444444 456899999988  555 677889999999999999988888888999999999999999888 


Q ss_pred             --CCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEE-EEeCCCCcEEEEeCCCCcEEEEEeccCCCe
Q 014475          238 --RDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLL-ISGSEDGMVRVWDPITHNIVRMFRLAKGPV  313 (424)
Q Consensus       238 --~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l-~t~~~dg~i~iwd~~~~~~~~~~~~~~~~v  313 (424)
                        .++.|++||++++         +.+..+..|. .+.+++|+| ++++ ++++.|+.|++||+.+++.+..+..|..+.
T Consensus       220 ~~~~~~v~~~d~~~~---------~~~~~~~~~~-~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~~~~~~~~~~~~  289 (391)
T 1l0q_A          220 DKYFNTVSMIDTGTN---------KITARIPVGP-DPAGIAVTPDGKKVYVALSFXNTVSVIDTATNTITATMAVGKNPY  289 (391)
T ss_dssp             CSSCCEEEEEETTTT---------EEEEEEECCS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEE
T ss_pred             CcCCCcEEEEECCCC---------eEEEEEecCC-CccEEEEccCCCEEEEEcCCCCEEEEEECCCCcEEEEEECCcCCC
Confidence              6899999999876         4455565554 578999999 7766 677899999999999999999988776543


Q ss_pred             e---EEE------------EEecC----------ceeeeccCCCceeeccCCCCC
Q 014475          314 N---NIL------------VVRRP----------LYLNLGSFSNPHTSSRRHGSQ  343 (424)
Q Consensus       314 ~---~l~------------~s~~~----------~~l~~~~~d~~i~iw~~~~~~  343 (424)
                      .   .+.            |+.+.          ..+...+.|...++|+...+.
T Consensus       290 ~~~~~~~~~~~~~~~~~a~fs~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~g~  344 (391)
T 1l0q_A          290 ASGQFIGSIPVQPVYPSADFKSNITSGYIFLSEPVQFTDLSKDATEWKWDFGDGS  344 (391)
T ss_dssp             CCSSCEEECSSCCCCCBCCEEESCCSSEEETTCCEEEEECCBSCSEEEEECSSSC
T ss_pred             ccceeeecccccccccccccccccccccccccceEEEEeCCCCceEEEEECCCCc
Confidence            2   122            33221          345566778888999986553

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=100.00  E-value=2.2e-36  Score=280.08  Aligned_cols=254  Identities=15%  Similarity=0.204  Sum_probs=218.1

Q ss_pred             eecCCCCeeEEEECCC-CCEEEEecCCCcEEEEEccC----------cceeeeeccccCCeEEEEEccCCc-EEEEeeCC
Q 014475           76 KSLPAEPIKPIAANSH-GTYIAGGGQSGDIYMWEVAS----------GRLLKKWHAHYRAVTCLVFSEDGS-FLISGSED  143 (424)
Q Consensus        76 ~~~~~~~v~~~~~s~~-~~~l~~~~~dg~v~iwd~~~----------~~~~~~~~~~~~~i~~~~~~~~~~-~l~s~~~d  143 (424)
                      ...|.+.|++++|+|+ +.+|++++.+|.|++||+.+          ...+..+.+|...|.+++|+|++. +|++|+.|
T Consensus       124 ~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d  203 (430)
T 2xyi_A          124 KINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDD  203 (430)
T ss_dssp             EEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECTT
T ss_pred             EEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCC
Confidence            3568899999999997 78999999999999999987          567788889999999999999988 99999999


Q ss_pred             CcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCC---ceeeeee-cCc
Q 014475          144 GCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKG---RLLRNIV-FPS  219 (424)
Q Consensus       144 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~---~~~~~~~-~~~  219 (424)
                      |.|++||+.+......    .......+.+|...|.+++|+|.+. ..|++++.|+.|++||++++   +....+. |..
T Consensus       204 g~i~vwd~~~~~~~~~----~~~~~~~~~~h~~~v~~v~~~p~~~-~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~  278 (430)
T 2xyi_A          204 HTICLWDINATPKEHR----VIDAKNIFTGHTAVVEDVAWHLLHE-SLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTA  278 (430)
T ss_dssp             SCEEEEETTSCCBGGG----EEECSEEECCCSSCEEEEEECSSCT-TEEEEEETTSEEEEEETTCSCSSSCSEEEECCSS
T ss_pred             CeEEEEeCCCCCCCCc----eeccceeecCCCCCEeeeEEeCCCC-CEEEEEeCCCeEEEEECCCCCCCcceeEeecCCC
Confidence            9999999976321110    1112345678999999999999433 79999999999999999987   4555554 889


Q ss_pred             ceeEEEECCCCC-EEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-C-CEEEEeCCCCcEEEEe
Q 014475          220 VIDAIALDPAEH-VFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-G-DLLISGSEDGMVRVWD  296 (424)
Q Consensus       220 ~i~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~-~~l~t~~~dg~i~iwd  296 (424)
                      .+++++|+|++. ++++|+.||.|++||++...        .++..+..|...|++++|+| + .+|++++.||.|++||
T Consensus       279 ~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~--------~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd  350 (430)
T 2xyi_A          279 EVNCLSFNPYSEFILATGSADKTVALWDLRNLK--------LKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWD  350 (430)
T ss_dssp             CEEEEEECSSCTTEEEEEETTSEEEEEETTCTT--------SCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEE
T ss_pred             CeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCC--------CCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEe
Confidence            999999999887 68899999999999999853        45677888999999999999 5 5799999999999999


Q ss_pred             CCC--------------CcEEEEEeccCCCeeEEEEEecCc-eeeeccCCCceeeccCCCC
Q 014475          297 PIT--------------HNIVRMFRLAKGPVNNILVVRRPL-YLNLGSFSNPHTSSRRHGS  342 (424)
Q Consensus       297 ~~~--------------~~~~~~~~~~~~~v~~l~~s~~~~-~l~~~~~d~~i~iw~~~~~  342 (424)
                      +..              .+.+..+.+|...|++++|+|+++ +|++++.||.|++|++...
T Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~  411 (430)
T 2xyi_A          351 LSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAEN  411 (430)
T ss_dssp             GGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred             CCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEcccc
Confidence            987              467888889999999999999999 8999999999999998744

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6.9e-35  Score=271.85  Aligned_cols=279  Identities=13%  Similarity=0.117  Sum_probs=227.1

Q ss_pred             ceEEecceeecCCCccccCCCCceeEEEEECCCCc---eeeee-------------------------------------
Q 014475           38 GLACVGQRFLASSQLREQPSASSGSILYWSWSKPQ---VEVKS-------------------------------------   77 (424)
Q Consensus        38 ~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~---~~~~~-------------------------------------   77 (424)
                      ++.+++  |+++|++++++. + +.|++||+.+++   .....                                     
T Consensus         6 p~~~v~--~s~dg~~l~~~~-~-~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (450)
T 2vdu_B            6 PLQNLL--TSRDGSLVFAII-K-NCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKG   81 (450)
T ss_dssp             CCCEEE--ECSSSSEEEEEE-T-TEEEEEEEETTTEEEEEEEEECCC---------------------------------
T ss_pred             cEEEEE--ecCCCCEEEEEe-C-CeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcC
Confidence            467777  999999666654 4 899999988776   22111                                     


Q ss_pred             ------------------cCCCCeeEEEECCCCCEE-EEecCCCcEEEEEcc--Ccceeeeec--cccCCeEEEEEccCC
Q 014475           78 ------------------LPAEPIKPIAANSHGTYI-AGGGQSGDIYMWEVA--SGRLLKKWH--AHYRAVTCLVFSEDG  134 (424)
Q Consensus        78 ------------------~~~~~v~~~~~s~~~~~l-~~~~~dg~v~iwd~~--~~~~~~~~~--~~~~~i~~~~~~~~~  134 (424)
                                        .|.+.|.+++|+|++++| ++|+.||.|++||+.  +++.+..+.  .|...|.+++|+|++
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~  161 (450)
T 2vdu_B           82 DSIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDD  161 (450)
T ss_dssp             ------------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTS
T ss_pred             ccccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCC
Confidence                              122369999999999996 899999999999999  888888876  567899999999999


Q ss_pred             cEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEc---CceeEEEEEeCCCcEEEEecCCCce
Q 014475          135 SFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYG---GVSATIVSASEDRTCKVWSLLKGRL  211 (424)
Q Consensus       135 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~~~~~l~~~~~d~~v~iwd~~~~~~  211 (424)
                      ++|++++.+|.+++|++.++...       ......+.+|...|.+++|+|+   +  .+|++++.|+.|++||+++++.
T Consensus       162 ~~l~~~~~~g~v~~~~~~~~~~~-------~~~~~~~~~h~~~v~~~~~sp~~~~~--~~l~s~~~d~~i~vwd~~~~~~  232 (450)
T 2vdu_B          162 TTVIIADKFGDVYSIDINSIPEE-------KFTQEPILGHVSMLTDVHLIKDSDGH--QFIITSDRDEHIKISHYPQCFI  232 (450)
T ss_dssp             SEEEEEETTSEEEEEETTSCCCS-------SCCCCCSEECSSCEEEEEEEECTTSC--EEEEEEETTSCEEEEEESCTTC
T ss_pred             CEEEEEeCCCcEEEEecCCcccc-------cccceeeecccCceEEEEEcCCCCCC--cEEEEEcCCCcEEEEECCCCce
Confidence            99999999999999999763211       0023356779999999999999   6  8999999999999999999988


Q ss_pred             eeeee--cCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeec-----------------------
Q 014475          212 LRNIV--FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLS-----------------------  266 (424)
Q Consensus       212 ~~~~~--~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~-----------------------  266 (424)
                      +..+.  |...|.+++|+ ++++|++++.|+.|++||++++.         .+..+.                       
T Consensus       233 ~~~~~~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  302 (450)
T 2vdu_B          233 VDKWLFGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGK---------NLSTFDYNSLIKPYLNDQHLAPPRFQNEN  302 (450)
T ss_dssp             EEEECCCCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCC---------EEEEEECHHHHGGGCCTTSBC--------
T ss_pred             eeeeecCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCc---------Eeeeecchhhhhhhhhhcccccccccccc
Confidence            87643  88999999999 99999999999999999999864         222222                       


Q ss_pred             --ccCcCeEEEEecC-CCEEEEeC-CCCcEEEEeC--CCC---cEEEEEeccCCCeeEEEEEecCceeeeccC------C
Q 014475          267 --DHSKAVTCLAYST-GDLLISGS-EDGMVRVWDP--ITH---NIVRMFRLAKGPVNNILVVRRPLYLNLGSF------S  331 (424)
Q Consensus       267 --~~~~~i~~~~~~~-~~~l~t~~-~dg~i~iwd~--~~~---~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~------d  331 (424)
                        .....|.+++|+| +++|++++ .|+.|++|++  .++   +.+..+..| +.|.+++|+|++.++++++.      +
T Consensus       303 ~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~-~~v~~~~~~~~~~~v~~~~~~~~~~~~  381 (450)
T 2vdu_B          303 NDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP-YNVISLSAHNDEFQVTLDNKESSGVQK  381 (450)
T ss_dssp             --CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS-SCEEEEEEETTEEEEEECCTTCCSSCC
T ss_pred             cccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccC-CceEEEEecCCcEEEEEecccCCCCCC
Confidence              2346799999999 88999888 8999999999  666   777888887 89999999997655555543      4


Q ss_pred             CceeeccCC
Q 014475          332 NPHTSSRRH  340 (424)
Q Consensus       332 ~~i~iw~~~  340 (424)
                      ..|.+|.+.
T Consensus       382 ~~i~v~~~~  390 (450)
T 2vdu_B          382 NFAKFIEYN  390 (450)
T ss_dssp             CSEEEEEEE
T ss_pred             cceEEEEEE
Confidence            557888765

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=100.00  E-value=6.3e-36  Score=274.85  Aligned_cols=275  Identities=15%  Similarity=0.218  Sum_probs=222.1

Q ss_pred             EEEeecCCCCCceEEEeCCCCceE-EEeeCCCCCCCceEEecceeec-CCCccccCCCCceeEEEEECCCCc--------
Q 014475            3 LLIASSSVADTGIGCWDLESGAEQ-LRYKSCASPPHGLACVGQRFLA-SSQLREQPSASSGSILYWSWSKPQ--------   72 (424)
Q Consensus         3 ~~lat~~~~dg~i~vwd~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~-~~~~l~~~~~~~g~i~vwd~~~~~--------   72 (424)
                      .++++++ .||.|+|||+.+.... ..+....+|...|.+++  |+| +++++++++.| |.|++||+.++.        
T Consensus        48 ~~~~~~~-~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~--~~p~~~~~l~s~s~d-g~v~vw~~~~~~~~~~~~~~  123 (402)
T 2aq5_A           48 ALICEAS-GGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIA--WCPHNDNVIASGSED-CTVMVWEIPDGGLVLPLREP  123 (402)
T ss_dssp             EEEBCCS-SSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEE--ECTTCTTEEEEEETT-SEEEEEECCTTCCSSCBCSC
T ss_pred             EEEEEEc-CCCEEEEEECccCCCCCCCCceEecCCCCEEEEE--eCCCCCCEEEEEeCC-CeEEEEEccCCCCccccCCc
Confidence            3566778 8999999999654322 22333445678899999  999 89999999987 999999998763        


Q ss_pred             eeeeecCCCCeeEEEECCCC-CEEEEecCCCcEEEEEccCcceeeee--ccccCCeEEEEEccCCcEEEEeeCCCcEEEE
Q 014475           73 VEVKSLPAEPIKPIAANSHG-TYIAGGGQSGDIYMWEVASGRLLKKW--HAHYRAVTCLVFSEDGSFLISGSEDGCVRIW  149 (424)
Q Consensus        73 ~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~v~iwd~~~~~~~~~~--~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iw  149 (424)
                      ......|...|.+++|+|++ ++|++++.||.|++||+++++.+..+  ..|...|.+++|+|++++|++++.||.|++|
T Consensus       124 ~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iw  203 (402)
T 2aq5_A          124 VITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVI  203 (402)
T ss_dssp             SEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEE
T ss_pred             eEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEE
Confidence            23445689999999999998 69999999999999999999999998  8899999999999999999999999999999


Q ss_pred             eCCcccchhcccccccceEEee-cCCcCc-eeEEEEEEcCceeEEEEE---eCCCcEEEEecCCCce-ee--eeecCcce
Q 014475          150 SLLTVFEECESQRASHLYLHSF-TGHTLR-ITDIVIGYGGVSATIVSA---SEDRTCKVWSLLKGRL-LR--NIVFPSVI  221 (424)
Q Consensus       150 d~~~~~~~~~~~~~~~~~~~~~-~~~~~~-i~~~~~~~~~~~~~l~~~---~~d~~v~iwd~~~~~~-~~--~~~~~~~i  221 (424)
                      |+++           ...+..+ ..|... +.++.|++++  .+++++   +.|+.|++||+++++. ..  .+.+...+
T Consensus       204 d~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~--~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v  270 (402)
T 2aq5_A          204 EPRK-----------GTVVAEKDRPHEGTRPVHAVFVSEG--KILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGV  270 (402)
T ss_dssp             ETTT-----------TEEEEEEECSSCSSSCCEEEECSTT--EEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSC
T ss_pred             eCCC-----------CceeeeeccCCCCCcceEEEEcCCC--cEEEEeccCCCCceEEEEcCccccCCceEEeccCCCce
Confidence            9965           3345555 677765 8999999987  888888   7899999999998764 22  23367789


Q ss_pred             eEEEECCCCCEEEE-EeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCC
Q 014475          222 DAIALDPAEHVFYA-GSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPIT  299 (424)
Q Consensus       222 ~~~~~~~~~~~l~~-~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~  299 (424)
                      .+++|+|+++++++ |+.||.|++||+.++.+.     ...+..+. |...|.+++|+| +.++++  .++.+++|++.+
T Consensus       271 ~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~-----~~~l~~~~-~~~~v~~~~~sp~~~~~~s--~~~~~~~~~l~~  342 (402)
T 2aq5_A          271 LLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPF-----LHYLSMFS-SKESQRGMGYMPKRGLEVN--KCEIARFYKLHE  342 (402)
T ss_dssp             EEEEEETTTTEEEEEETTCSCEEEEEECSSTTC-----EEEEEEEC-CSSCCSEEEECCGGGSCGG--GTEEEEEEEEET
T ss_pred             eEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcc-----eEeecccc-cCCcccceEEeccccccee--cceeEEEEEcCC
Confidence            99999999999875 557999999999986421     01222232 568999999999 777654  466999999987


Q ss_pred             CcE
Q 014475          300 HNI  302 (424)
Q Consensus       300 ~~~  302 (424)
                      ++.
T Consensus       343 ~~~  345 (402)
T 2aq5_A          343 RKC  345 (402)
T ss_dssp             TEE
T ss_pred             CcE
Confidence            653

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=100.00  E-value=3.7e-35  Score=263.96  Aligned_cols=269  Identities=17%  Similarity=0.203  Sum_probs=216.6

Q ss_pred             CCCCceEEecceeecCCCccccCCCCceeEEEEECCCCce-----eeeecCCCCeeEEEECC--CCCEEEEecCCCcEEE
Q 014475           34 SPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQV-----EVKSLPAEPIKPIAANS--HGTYIAGGGQSGDIYM  106 (424)
Q Consensus        34 ~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~-----~~~~~~~~~v~~~~~s~--~~~~l~~~~~dg~v~i  106 (424)
                      +|...|.+++  |+|++++|++++.| |.|++||+.++..     .....|..+|.+++|+|  ++++|++|+.||.|++
T Consensus         9 gH~~~v~~~~--~~~~~~~l~~~~~d-g~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~v   85 (351)
T 3f3f_A            9 GHDDLVHDVV--YDFYGRHVATCSSD-QHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKL   85 (351)
T ss_dssp             CCSSCEEEEE--ECSSSSEEEEEETT-SEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEE
T ss_pred             ccccceeEEE--EcCCCCEEEEeeCC-CeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEE
Confidence            4667899999  99999999999988 9999999986532     12246899999999999  6999999999999999


Q ss_pred             EEccCc---------ceeeeeccccCCeEEEEEccC--CcEEEEeeCCCcEEEEeCCcccchhcccccccc--eEEeecC
Q 014475          107 WEVASG---------RLLKKWHAHYRAVTCLVFSED--GSFLISGSEDGCVRIWSLLTVFEECESQRASHL--YLHSFTG  173 (424)
Q Consensus       107 wd~~~~---------~~~~~~~~~~~~i~~~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~--~~~~~~~  173 (424)
                      ||++++         +.+..+..|...|.+++|+|+  +++|++++.||.|++||++++............  .......
T Consensus        86 wd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  165 (351)
T 3f3f_A           86 WEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPAN  165 (351)
T ss_dssp             EEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSS
T ss_pred             EecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccCC
Confidence            999887         457778889999999999999  999999999999999999875432221110000  0111236


Q ss_pred             CcCceeEEEEEEc---CceeEEEEEeCCCcEEEEecCCCce--eeeee-cCcceeEEEECCCC----CEEEEEeCCCcEE
Q 014475          174 HTLRITDIVIGYG---GVSATIVSASEDRTCKVWSLLKGRL--LRNIV-FPSVIDAIALDPAE----HVFYAGSRDGSIY  243 (424)
Q Consensus       174 ~~~~i~~~~~~~~---~~~~~l~~~~~d~~v~iwd~~~~~~--~~~~~-~~~~i~~~~~~~~~----~~l~~~~~dg~i~  243 (424)
                      |...+.+++|+|+   +  ..+++++.++.+.+|+...++.  +..+. |...|.+++|+|++    ++|++++.||.|+
T Consensus       166 ~~~~~~~~~~~p~~~~~--~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~  243 (351)
T 3f3f_A          166 HLQSDFCLSWCPSRFSP--EKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIR  243 (351)
T ss_dssp             CSCCCEEEEECCCSSSC--CEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEE
T ss_pred             cccceeEEEeccCCCCC--cEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEE
Confidence            8889999999997   5  8999999999998888877765  33443 78899999999998    8999999999999


Q ss_pred             EEEcCCCCCCC-------------------------------------CCcCceeeeeecccCcCeEEEEecC-CCEEEE
Q 014475          244 IAALNAESPST-------------------------------------SSYGMHIIGSLSDHSKAVTCLAYST-GDLLIS  285 (424)
Q Consensus       244 i~d~~~~~~~~-------------------------------------~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t  285 (424)
                      +||++......                                     .......+..+.+|...|++++|+| +++|++
T Consensus       244 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s  323 (351)
T 3f3f_A          244 IFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILSS  323 (351)
T ss_dssp             EEEEEECC---------------------------------------CCSEEEEEEEEECTTSSCEEEEEECSSSCCEEE
T ss_pred             EEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEEcCCCCEEEE
Confidence            99998752211                                     0111256677888999999999999 999999


Q ss_pred             eCCCCcEEEEeCCCCcEEEEEe
Q 014475          286 GSEDGMVRVWDPITHNIVRMFR  307 (424)
Q Consensus       286 ~~~dg~i~iwd~~~~~~~~~~~  307 (424)
                      ++.||.|++||+.+++.+..+.
T Consensus       324 ~~~dg~v~iw~~~~~~~~~~~~  345 (351)
T 3f3f_A          324 AGDDGKVRLWKATYSNEFKCMS  345 (351)
T ss_dssp             EETTSCEEEEEECTTSCEEEEE
T ss_pred             ecCCCcEEEEecCcCcchhhee
Confidence            9999999999999886555443

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=100.00  E-value=1.2e-35  Score=277.00  Aligned_cols=258  Identities=17%  Similarity=0.259  Sum_probs=207.8

Q ss_pred             cCCCCeeEEEECCCCCEEEEecCCCcEEEEEccCcc-----------eeeeecccc------------CCeEEEEEccCC
Q 014475           78 LPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGR-----------LLKKWHAHY------------RAVTCLVFSEDG  134 (424)
Q Consensus        78 ~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~-----------~~~~~~~~~------------~~i~~~~~~~~~  134 (424)
                      .+.+.|.+++|+|++++||+|+.||.|+|||+.+++           ....+.+|.            ..|.+++|+|++
T Consensus        26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~  105 (447)
T 3dw8_B           26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQK  105 (447)
T ss_dssp             CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCC
T ss_pred             cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCC
Confidence            457899999999999999999999999999998876           477888898            889999999988


Q ss_pred             --cEEEEeeCCCcEEEEeCCcccchhcccc----------------------------cccceEEe-ecCCcCceeEEEE
Q 014475          135 --SFLISGSEDGCVRIWSLLTVFEECESQR----------------------------ASHLYLHS-FTGHTLRITDIVI  183 (424)
Q Consensus       135 --~~l~s~~~dg~i~iwd~~~~~~~~~~~~----------------------------~~~~~~~~-~~~~~~~i~~~~~  183 (424)
                        ..|++++.||.|++||+.+.........                            ........ ..+|...|.+++|
T Consensus       106 ~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~  185 (447)
T 3dw8_B          106 NAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISI  185 (447)
T ss_dssp             SSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEE
T ss_pred             CcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEE
Confidence              7999999999999999976332100000                            00001112 3679999999999


Q ss_pred             EEcCceeEEEEEeCCCcEEEEecCC-Cceeeee--------ecCcceeEEEECCCC-CEEEEEeCCCcEEEEEcCCCCCC
Q 014475          184 GYGGVSATIVSASEDRTCKVWSLLK-GRLLRNI--------VFPSVIDAIALDPAE-HVFYAGSRDGSIYIAALNAESPS  253 (424)
Q Consensus       184 ~~~~~~~~l~~~~~d~~v~iwd~~~-~~~~~~~--------~~~~~i~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~  253 (424)
                      +|++  ++|+++ .|+.|++||+++ ++....+        .|...|.+++|+|++ .+|++|+.||.|++||++.....
T Consensus       186 ~~~~--~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~  262 (447)
T 3dw8_B          186 NSDY--ETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALC  262 (447)
T ss_dssp             CTTS--SEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSS
T ss_pred             cCCC--CEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccc
Confidence            9988  889998 799999999984 4444432        377889999999998 99999999999999999986521


Q ss_pred             CCCcCceeeeeecccCc------------CeEEEEecC-CCEEEEeCCCCcEEEEeCCC-CcEEEEEeccCCC-------
Q 014475          254 TSSYGMHIIGSLSDHSK------------AVTCLAYST-GDLLISGSEDGMVRVWDPIT-HNIVRMFRLAKGP-------  312 (424)
Q Consensus       254 ~~~~~~~~~~~~~~~~~------------~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~-~~~~~~~~~~~~~-------  312 (424)
                      .     .....+..|..            .|.+++|+| +++|++++. +.|++||+++ ++++..+..|...       
T Consensus       263 ~-----~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~  336 (447)
T 3dw8_B          263 D-----RHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSL  336 (447)
T ss_dssp             C-----TTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHH
T ss_pred             c-----ceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeecccccccccccc
Confidence            1     11345555554            999999999 999999998 9999999997 8899999888642       


Q ss_pred             --------eeEEEEEecCceeeeccCCCceeeccCCCCCC
Q 014475          313 --------VNNILVVRRPLYLNLGSFSNPHTSSRRHGSQL  344 (424)
Q Consensus       313 --------v~~l~~s~~~~~l~~~~~d~~i~iw~~~~~~~  344 (424)
                              +..++|+|++++|++|+.||.|++||+.+++.
T Consensus       337 ~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~  376 (447)
T 3dw8_B          337 YENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRD  376 (447)
T ss_dssp             HHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCE
T ss_pred             ccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcc
Confidence                    23499999999999999999999999997754

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.5e-36  Score=274.67  Aligned_cols=261  Identities=11%  Similarity=-0.012  Sum_probs=212.8

Q ss_pred             CceEEecceeecCCCccccCCCCceeEEEEECCCCceeeeecCCCCeeEEEECCCCCEEEEecCCCcEEEEEccCcceee
Q 014475           37 HGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLK  116 (424)
Q Consensus        37 ~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~  116 (424)
                      .+|.+++  |+|||+++|+++.| ++|+  |...++..  ..|...|.+++|+|+|       .++.+.+|+.+. ....
T Consensus        16 ~~v~sv~--~SpDG~~iASas~D-~TV~--d~~~~~~l--~gh~~~v~~V~FsPdg-------~~~~~~~~~~~~-~~~~   80 (588)
T 2j04_A           16 DWKNNLT--WARDGTLYLTTFPD-ISIG--QPKYAKDI--NCNSKNLFHVKEFPLE-------FENKLDFELAQQ-NGLL   80 (588)
T ss_dssp             SSSCCEE--ECTTSCEEEECSSS-EEEE--EECCCSCC--SSBGGGTEEEEEECCC-------CCCTTTTSCCCS-SCSS
T ss_pred             ccEEEEE--ECCCCCEEEEEcCC-ceee--ccccccee--cCCCccEEEEEECCCC-------CcceEEEEeCCC-ceEe
Confidence            6678888  99999999999998 9999  75444332  5789999999999999       455555555332 2222


Q ss_pred             eeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcC-----ceeEEEEEEcCceeE
Q 014475          117 KWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTL-----RITDIVIGYGGVSAT  191 (424)
Q Consensus       117 ~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-----~i~~~~~~~~~~~~~  191 (424)
                      .+ .|...|.+++|+|+|++|++++.||.|++||...             .+..+. |..     .+.+++|+|++  ++
T Consensus        81 ~~-~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~-------------~l~~l~-~~~~~~~~sv~svafSPDG--~~  143 (588)
T 2j04_A           81 NS-QPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK-------------MLTNLD-SKGNLSSRTYHCFEWNPIE--SS  143 (588)
T ss_dssp             TT-SCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE-------------EEEECC-CSSCSTTTCEEEEEECSSS--SC
T ss_pred             ec-CCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc-------------eeeecc-CCCccccccEEEEEEcCCC--CE
Confidence            32 4588999999999999999999999999999632             444455 555     59999999999  99


Q ss_pred             EEEEeCCCcEEEEecCCCce-------eeeee-----cCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCc
Q 014475          192 IVSASEDRTCKVWSLLKGRL-------LRNIV-----FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGM  259 (424)
Q Consensus       192 l~~~~~d~~v~iwd~~~~~~-------~~~~~-----~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~  259 (424)
                      |++|+.||+|++||+.+++.       +..+.     |...|.+++|+|+|  +++++.|+.+++||+..+...      
T Consensus       144 LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~------  215 (588)
T 2j04_A          144 IVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQ------  215 (588)
T ss_dssp             EEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSC------
T ss_pred             EEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccc------
Confidence            99999999999999998753       45542     45699999999999  888999999999999886411      


Q ss_pred             eeeeee-cccCcCeEEEEecCCCEEEEeCCCCcEEEEeCCCCcEEEEEeccCCCeeEEEE--EecCceeeeccCCCceee
Q 014475          260 HIIGSL-SDHSKAVTCLAYSTGDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILV--VRRPLYLNLGSFSNPHTS  336 (424)
Q Consensus       260 ~~~~~~-~~~~~~i~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~--s~~~~~l~~~~~d~~i~i  336 (424)
                      .....+ .+|...|.+++|+ ++.||+++ ++.|++||+.+++......+|.+.|..++|  +|+++.|++++.||+ ++
T Consensus       216 ~~~~tL~~~h~~~V~svaFs-g~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~-kl  292 (588)
T 2j04_A          216 PVSRMIQNASRRKITDLKIV-DYKVVLTC-PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSNKTSY-KV  292 (588)
T ss_dssp             CCEEEEECCCSSCCCCEEEE-TTEEEEEC-SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECSSCEE-EE
T ss_pred             cceeeecccccCcEEEEEEE-CCEEEEEe-CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC-EE
Confidence            123345 3788999999999 89999998 699999999988774444479999999999  999999999999999 99


Q ss_pred             ccCC
Q 014475          337 SRRH  340 (424)
Q Consensus       337 w~~~  340 (424)
                      |...
T Consensus       293 w~~d  296 (588)
T 2j04_A          293 LLED  296 (588)
T ss_dssp             EESS
T ss_pred             Eeec
Confidence            9876

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=100.00  E-value=4.6e-35  Score=252.53  Aligned_cols=270  Identities=10%  Similarity=0.054  Sum_probs=199.5

Q ss_pred             eEEEeecCCCCCceEEEeCCCC---ceEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCceeeeec
Q 014475            2 ELLIASSSVADTGIGCWDLESG---AEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSL   78 (424)
Q Consensus         2 e~~lat~~~~dg~i~vwd~~~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~~~   78 (424)
                      |..+++++  +.+|++|+..++   +.+.+++.++   ..|..+.  +.||..-|+...-                 -..
T Consensus        54 ~~~~~~~~--~~~v~lw~~~~~~~~~~~~~~~~~~---~~v~~~~--~~~~~~~~~~~~~-----------------~~~  109 (356)
T 2w18_A           54 EPCIITAC--EDVVSLWKALDAWQWEKLYTWHFAE---VPVLQIV--PVPDVYNLVCVAL-----------------GNL  109 (356)
T ss_dssp             EEEEEEEE--SSEEEEEEESSSSBEEEEEEEECCS---SCEEEEC--CCTTCCSCEEEEE-----------------CSS
T ss_pred             ccEEEEec--cceEEEcccCCCccceeeEEEeccC---ceeEEEE--EcCcccceeeeee-----------------ccc
Confidence            67889999  689999999999   7888887655   4566667  8887664443322                 123


Q ss_pred             CCCCeeEEEECCC----CCEEEEecCCCcEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEee--CCCcEEEEeCC
Q 014475           79 PAEPIKPIAANSH----GTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGS--EDGCVRIWSLL  152 (424)
Q Consensus        79 ~~~~v~~~~~s~~----~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~--~dg~i~iwd~~  152 (424)
                      +...|++++|+||    ++++++++.+  +.+|++.+                      ++++.+++  .|+.|++|++.
T Consensus       110 ~~~~v~sla~spd~~~~~~~l~s~g~~--~~v~~l~~----------------------g~lv~ss~~g~d~~V~~~~~s  165 (356)
T 2w18_A          110 EIREIRALFCSSDDESEKQVLLKSGNI--KAVLGLTK----------------------RRLVSSSGTLSDQQVEVMTFA  165 (356)
T ss_dssp             SEEEEEEECC------CCEEEEEEEEE--EEEEEETT----------------------TEEEEEESSSTTCEEEEEEEC
T ss_pred             cccceEEEEECCCccccccEEEeCCCe--EEEEecCC----------------------CcEEEecccCCCCcEEEEEEC
Confidence            4568999999999    9999998744  77786543                      33333322  36666666663


Q ss_pred             cccchhcccccccceEEeecCCcCceeEEEEEE-cCceeEEEEEeCCCcEEEEecCCCceeeeee-c---CcceeEEEEC
Q 014475          153 TVFEECESQRASHLYLHSFTGHTLRITDIVIGY-GGVSATIVSASEDRTCKVWSLLKGRLLRNIV-F---PSVIDAIALD  227 (424)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~-~---~~~i~~~~~~  227 (424)
                      .          ....+.....|...++.++|++ ++++..|++++.|++|++||++++++++.+. +   ...+.+++|+
T Consensus       166 ~----------dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafS  235 (356)
T 2w18_A          166 E----------DGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYS  235 (356)
T ss_dssp             T----------TSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEE
T ss_pred             C----------CCceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEEC
Confidence            2          1223444567888899999999 4555899999999999999999999999987 3   2467788999


Q ss_pred             CCCCEE------------EEEeCCCcEEEEEcCCCCCCCCCcCceeeeee-----cccCcCeEEEEecCCCEEEEeCCCC
Q 014475          228 PAEHVF------------YAGSRDGSIYIAALNAESPSTSSYGMHIIGSL-----SDHSKAVTCLAYSTGDLLISGSEDG  290 (424)
Q Consensus       228 ~~~~~l------------~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~-----~~~~~~i~~~~~~~~~~l~t~~~dg  290 (424)
                      |++.++            ++|+.|++|++||..++.         .+..+     .+|...+.+..++ +.++++++.|+
T Consensus       236 pdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk---------~l~v~~~~~p~Gh~~~~lsg~~s-g~~lASgS~Dg  305 (356)
T 2w18_A          236 EMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTL---------SVGVMLYCLPPGQAGRFLEGDVK-DHCAAAILTSG  305 (356)
T ss_dssp             ETTEEEEEEC------------CCEEEEEEETTTTE---------EEEEEEECCCTTCCCCEEEEEEE-TTEEEEEETTS
T ss_pred             CCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCE---------EEEEEEeeccCCCcceeEccccC-CCEEEEEcCCC
Confidence            999876            557789999999998863         33222     3666555444444 78999999999


Q ss_pred             cEEEEeCCCCcEEEEEeccCCCee-EEEEEecCceeeeccCCCceeeccC
Q 014475          291 MVRVWDPITHNIVRMFRLAKGPVN-NILVVRRPLYLNLGSFSNPHTSSRR  339 (424)
Q Consensus       291 ~i~iwd~~~~~~~~~~~~~~~~v~-~l~~s~~~~~l~~~~~d~~i~iw~~  339 (424)
                      +|+|||+.+++++.++.+|...+. .++|+|||++|++|+.|++|++|++
T Consensus       306 TIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd~  355 (356)
T 2w18_A          306 TIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY  355 (356)
T ss_dssp             CEEEEETTTCSEEEEECCC--CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred             cEEEEECCCCcEEEEecCCCCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence            999999999999999999987655 5899999999999999999999985

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=100.00  E-value=5.1e-34  Score=264.82  Aligned_cols=302  Identities=13%  Similarity=0.099  Sum_probs=241.9

Q ss_pred             ecCCCCCceEEEeCCC--C--ceEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCceeee------
Q 014475            7 SSSVADTGIGCWDLES--G--AEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVK------   76 (424)
Q Consensus         7 t~~~~dg~i~vwd~~~--~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~------   76 (424)
                      +++ .++.++||.+..  +  +.+..+..+    ..+.+++  |+|++.++++++.+ +.|++||..+++....      
T Consensus        94 ~~~-~~~~~~l~~~d~~~~~~~~~~~~~~~----~~~~~~~--~s~~~~~~~~~~~~-~~i~~~d~~~g~~~~~~~~~~~  165 (433)
T 3bws_A           94 RKP-EELNEKLIALDKEGITHRFISRFKTG----FQPKSVR--FIDNTRLAIPLLED-EGMDVLDINSGQTVRLSPPEKY  165 (433)
T ss_dssp             SSG-GGGTTCEEECCBTTCSEEEEEEEECS----SCBCCCE--ESSSSEEEEEBTTS-SSEEEEETTTCCEEEECCCHHH
T ss_pred             ccc-CCCceEEEEECCCCCcceEEEEEcCC----CCceEEE--EeCCCeEEEEeCCC-CeEEEEECCCCeEeeecCcccc
Confidence            444 666556665543  4  455555433    2344666  99976666666665 9999999998776532      


Q ss_pred             ecCCCCeeEEEECCCCCEEEEecCCCcEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEE-eeCCCcEEEEeCCccc
Q 014475           77 SLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLIS-GSEDGCVRIWSLLTVF  155 (424)
Q Consensus        77 ~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s-~~~dg~i~iwd~~~~~  155 (424)
                      ..|...|.+++|+|+++++++++.|+.|++||+++++.+..+..|...+.+++|+|+++.+++ ++.|+.|++||++++ 
T Consensus       166 ~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~-  244 (433)
T 3bws_A          166 KKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTK-  244 (433)
T ss_dssp             HTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTT-
T ss_pred             cccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCC-
Confidence            246779999999999999999999999999999999999999889999999999999998854 447999999999652 


Q ss_pred             chhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEe--------CCCcEEEEecCCCceeeeeecCcceeEEEEC
Q 014475          156 EECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSAS--------EDRTCKVWSLLKGRLLRNIVFPSVIDAIALD  227 (424)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~--------~d~~v~iwd~~~~~~~~~~~~~~~i~~~~~~  227 (424)
                                ..+..+.. ...+.+++|+|++  +.+++++        .|+.|++||+++++....+.+...+.+++|+
T Consensus       245 ----------~~~~~~~~-~~~~~~~~~~~~g--~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~  311 (433)
T 3bws_A          245 ----------LEIRKTDK-IGLPRGLLLSKDG--KELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGPPGNKRHIVSG  311 (433)
T ss_dssp             ----------EEEEECCC-CSEEEEEEECTTS--SEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEEEECEEEEEEC
T ss_pred             ----------cEEEEecC-CCCceEEEEcCCC--CEEEEEECCCCccccCCCeEEEEECCCCcEEeeccCCCCcceEEEC
Confidence                      23333443 4468999999998  7888777        5889999999999988888788889999999


Q ss_pred             CCCCEE-EEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCC---------------CC
Q 014475          228 PAEHVF-YAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSE---------------DG  290 (424)
Q Consensus       228 ~~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~---------------dg  290 (424)
                      |+++.+ ++++.++.|++||++++         +....+. +...+.+++|+| ++++++++.               ||
T Consensus       312 ~~g~~l~~~~~~~~~v~v~d~~~~---------~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg  381 (433)
T 3bws_A          312 NTENKIYVSDMCCSKIEVYDLKEK---------KVQKSIP-VFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLG  381 (433)
T ss_dssp             SSTTEEEEEETTTTEEEEEETTTT---------EEEEEEE-CSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCC
T ss_pred             CCCCEEEEEecCCCEEEEEECCCC---------cEEEEec-CCCCCCeEEEcCCCCEEEEEecCCCccccccccccccce
Confidence            999755 55689999999999875         3444443 677899999999 888887765               57


Q ss_pred             cEEEEeCCCCcEEEEEeccCCCeeEEEEEecCceeeecc-CCCceeeccCCC
Q 014475          291 MVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGS-FSNPHTSSRRHG  341 (424)
Q Consensus       291 ~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~-~d~~i~iw~~~~  341 (424)
                      .|++||+.+++.+..+.. ...+.+++|+|++++|++++ .|+.|++|++.+
T Consensus       382 ~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~~  432 (433)
T 3bws_A          382 KVYVIDTTTDTVKEFWEA-GNQPTGLDVSPDNRYLVISDFLDHQIRVYRRDG  432 (433)
T ss_dssp             EEEEEETTTTEEEEEEEC-SSSEEEEEECTTSCEEEEEETTTTEEEEEEETT
T ss_pred             EEEEEECCCCcEEEEecC-CCCCceEEEcCCCCEEEEEECCCCeEEEEEecC
Confidence            999999999999998886 46789999999999998776 599999999863

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.7e-35  Score=292.30  Aligned_cols=257  Identities=18%  Similarity=0.161  Sum_probs=217.7

Q ss_pred             eeecCCCCeeEEEECCCCCEEEEecCCCcEEEEEcc--CcceeeeeccccCCeEEEEEccC--CcEEEEeeCCCcEEEEe
Q 014475           75 VKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVA--SGRLLKKWHAHYRAVTCLVFSED--GSFLISGSEDGCVRIWS  150 (424)
Q Consensus        75 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~--~~~~~~~~~~~~~~i~~~~~~~~--~~~l~s~~~dg~i~iwd  150 (424)
                      ....|.++|++++|+|++++|++|+.||.|++||+.  +++....+.+|.++|++++|+|+  +++|++|+.||.|++||
T Consensus         4 ~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd   83 (753)
T 3jro_A            4 IANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWK   83 (753)
T ss_dssp             ----CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEE
T ss_pred             ecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEE
Confidence            345789999999999999999999999999999998  55778888999999999999987  99999999999999999


Q ss_pred             CCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceee--ee-ecCcceeEEEEC
Q 014475          151 LLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLR--NI-VFPSVIDAIALD  227 (424)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~--~~-~~~~~i~~~~~~  227 (424)
                      +.+         ........+.+|...|.+++|+|+..+..+++++.||.|++||++++....  .+ .+...|.+++|+
T Consensus        84 ~~~---------~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~  154 (753)
T 3jro_A           84 EEN---------GRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWA  154 (753)
T ss_dssp             EET---------TEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEEC
T ss_pred             CCC---------CcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEec
Confidence            965         223356677889999999999998222899999999999999998874332  22 378899999999


Q ss_pred             C-------------CCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecCC----CEEEEeCCCC
Q 014475          228 P-------------AEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTG----DLLISGSEDG  290 (424)
Q Consensus       228 ~-------------~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~----~~l~t~~~dg  290 (424)
                      |             ++..+++|+.||.|++||++.....     ......+.+|...|++++|+|.    .+|++|+.||
T Consensus       155 p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~-----~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg  229 (753)
T 3jro_A          155 PATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQT-----YVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDR  229 (753)
T ss_dssp             CCC---------CGGGCCEEEEETTSCEEEEEEETTTTE-----EEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSS
T ss_pred             CcccccccccccCCCCCEEEEEECCCeEEEEeccCCccc-----ceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCC
Confidence            9             5899999999999999999876421     2456677899999999999983    6899999999


Q ss_pred             cEEEEeCCCCc-----EEEEEeccCCCeeEEEEEecCceeeeccCCCceeeccCCCCCCC
Q 014475          291 MVRVWDPITHN-----IVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGSQLP  345 (424)
Q Consensus       291 ~i~iwd~~~~~-----~~~~~~~~~~~v~~l~~s~~~~~l~~~~~d~~i~iw~~~~~~~~  345 (424)
                      .|++||+++++     .+.....|.+.|++++|+|++++|++++.||.|++|++......
T Consensus       230 ~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~~~~  289 (753)
T 3jro_A          230 TCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEGKW  289 (753)
T ss_dssp             CEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCSSSCC
T ss_pred             EEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCCCCCc
Confidence            99999999874     33344468889999999999999999999999999999865443

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.1e-35  Score=272.81  Aligned_cols=278  Identities=13%  Similarity=0.112  Sum_probs=214.7

Q ss_pred             EEeecCCCCCceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCceeeeecCCCCe
Q 014475            4 LIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSLPAEPI   83 (424)
Q Consensus         4 ~lat~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~~~~~~~v   83 (424)
                      ++||++ .|++|+  |.+.++.+      .+|...|.+++  |+|+|       .+ +.+.+|+.+... .....+...|
T Consensus        29 ~iASas-~D~TV~--d~~~~~~l------~gh~~~v~~V~--FsPdg-------~~-~~~~~~~~~~~~-~~~~~~~~~V   88 (588)
T 2j04_A           29 LYLTTF-PDISIG--QPKYAKDI------NCNSKNLFHVK--EFPLE-------FE-NKLDFELAQQNG-LLNSQPVCYP   88 (588)
T ss_dssp             EEEECS-SSEEEE--EECCCSCC------SSBGGGTEEEE--EECCC-------CC-CTTTTSCCCSSC-SSTTSCSCCE
T ss_pred             EEEEEc-CCceee--ccccccee------cCCCccEEEEE--ECCCC-------Cc-ceEEEEeCCCce-EeecCCCCcE
Confidence            789999 999999  75554433      35778899999  99999       22 777777755433 2333557899


Q ss_pred             eEEEECCCCCEEEEecCCCcEEEEEccCcceeeeeccccC-----CeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchh
Q 014475           84 KPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYR-----AVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEEC  158 (424)
Q Consensus        84 ~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~-----~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~  158 (424)
                      .+++|||+|++||+++.||.|++||.++  ++..+. |..     .|.+++|+|+|++|++|+.||+|++||+.++..  
T Consensus        89 ~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l--  163 (588)
T 2j04_A           89 RVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSE--  163 (588)
T ss_dssp             EEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCTT--
T ss_pred             EEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCcc--
Confidence            9999999999999999999999999544  666666 665     499999999999999999999999999976210  


Q ss_pred             cccccccceEEee----cCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCcee---eeee--cCcceeEEEECCC
Q 014475          159 ESQRASHLYLHSF----TGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLL---RNIV--FPSVIDAIALDPA  229 (424)
Q Consensus       159 ~~~~~~~~~~~~~----~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~---~~~~--~~~~i~~~~~~~~  229 (424)
                        .......+..+    .+|...|.+++|+|+   . +++++.|++|++||+.+++..   ..+.  |...|.+++|+  
T Consensus       164 --~~~~~i~l~ti~~~~~gh~~~V~sVawSPd---g-Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs--  235 (588)
T 2j04_A          164 --NTPEFYFESSIRLSDAGSKDWVTHIVWYED---V-LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIV--  235 (588)
T ss_dssp             --TCCCCEEEEEEECSCTTCCCCEEEEEEETT---E-EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEE--
T ss_pred             --ccccceeeeeeecccccccccEEEEEEcCC---c-EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEEE--
Confidence              00001134554    678899999999987   4 889999999999999887742   3453  66789999999  


Q ss_pred             CCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEe--cC-CCEEEEeCCCCcEEEEeCCCCcEEEEE
Q 014475          230 EHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAY--ST-GDLLISGSEDGMVRVWDPITHNIVRMF  306 (424)
Q Consensus       230 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~-~~~l~t~~~dg~i~iwd~~~~~~~~~~  306 (424)
                      +..+++++ ++.|++||+..+         .......+|...|..++|  +| +..++++++||+ ++|....       
T Consensus       236 g~~LASa~-~~tIkLWd~~~~---------~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d~-------  297 (588)
T 2j04_A          236 DYKVVLTC-PGYVHKIDLKNY---------SISSLKTGSLENFHIIPLNHEKESTILLMSNKTSY-KVLLEDE-------  297 (588)
T ss_dssp             TTEEEEEC-SSEEEEEETTTT---------EEEEEECSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESSS-------
T ss_pred             CCEEEEEe-CCeEEEEECCCC---------eEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeecc-------
Confidence            68888887 699999999986         332333379999999999  99 889999999999 9999761       


Q ss_pred             eccCCCeeEEEEEecCceeeeccCCCceeeccCCCCC
Q 014475          307 RLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGSQ  343 (424)
Q Consensus       307 ~~~~~~v~~l~~s~~~~~l~~~~~d~~i~iw~~~~~~  343 (424)
                               ++++||+..+++.  |+++++|+..+..
T Consensus       298 ---------~~~spd~~l~a~~--d~~v~lW~~~g~~  323 (588)
T 2j04_A          298 ---------LHVTADNIIAPYL--EKKFKKWSTIWNE  323 (588)
T ss_dssp             ---------EEEECCCSSHHHH--HHHHHHTTTTTTS
T ss_pred             ---------EEECCCceEEEEc--CCEEEEEECCCCc
Confidence                     4466666655554  6666666664443

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=100.00  E-value=9.3e-35  Score=261.04  Aligned_cols=260  Identities=15%  Similarity=0.135  Sum_probs=223.3

Q ss_pred             EEeecCCCCCceEEEeCCCCc---eEEEeeCCCCCCCceEEecceeecCCC-ccccCCCCceeEEEEEC-CCCceeeeec
Q 014475            4 LIASSSVADTGIGCWDLESGA---EQLRYKSCASPPHGLACVGQRFLASSQ-LREQPSASSGSILYWSW-SKPQVEVKSL   78 (424)
Q Consensus         4 ~lat~~~~dg~i~vwd~~~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~~~~~~~g~i~vwd~-~~~~~~~~~~   78 (424)
                      +|++++ .||.|+|||+.+++   ....+.   .|...|.+++  |+|+++ ++++++.+ |.|++||+ .+++......
T Consensus        25 ~l~~~~-~d~~v~iw~~~~~~~~~~~~~~~---~~~~~v~~~~--~~~~~~~~l~~~~~d-g~i~~wd~~~~~~~~~~~~   97 (342)
T 1yfq_A           25 LLLITS-WDGSLTVYKFDIQAKNVDLLQSL---RYKHPLLCCN--FIDNTDLQIYVGTVQ-GEILKVDLIGSPSFQALTN   97 (342)
T ss_dssp             EEEEEE-TTSEEEEEEEETTTTEEEEEEEE---ECSSCEEEEE--EEESSSEEEEEEETT-SCEEEECSSSSSSEEECBS
T ss_pred             EEEEEc-CCCeEEEEEeCCCCccccceeee---ecCCceEEEE--ECCCCCcEEEEEcCC-CeEEEEEeccCCceEeccc
Confidence            688898 99999999999887   233333   3557799999  999999 99999987 99999999 8887766677


Q ss_pred             --CCCCeeEEEECCCCCEEEEecCCCcEEEEEccC---------cceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEE
Q 014475           79 --PAEPIKPIAANSHGTYIAGGGQSGDIYMWEVAS---------GRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVR  147 (424)
Q Consensus        79 --~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~---------~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~  147 (424)
                        |...|.+++|+| ++++++++.|+.|++||+++         ++.+..+. |...|.+++|+|++  +++++.|+.|+
T Consensus        98 ~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~--l~~~~~d~~i~  173 (342)
T 1yfq_A           98 NEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-VKNKIFTMDTNSSR--LIVGMNNSQVQ  173 (342)
T ss_dssp             CCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-SCCCEEEEEECSSE--EEEEESTTEEE
T ss_pred             cCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe-eCCceEEEEecCCc--EEEEeCCCeEE
Confidence              999999999999 99999999999999999998         77777777 88999999999876  99999999999


Q ss_pred             EEeCCc-ccchhcccccccceEEeecCCcCceeEEEEEE-cCceeEEEEEeCCCcEEEEecCCC------ceeeeee-cC
Q 014475          148 IWSLLT-VFEECESQRASHLYLHSFTGHTLRITDIVIGY-GGVSATIVSASEDRTCKVWSLLKG------RLLRNIV-FP  218 (424)
Q Consensus       148 iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~l~~~~~d~~v~iwd~~~~------~~~~~~~-~~  218 (424)
                      +||+++ +.         .........|...+.+++|+| ++  ..+++++.||.+++||++..      +....+. +.
T Consensus       174 i~d~~~~~~---------~~~~~~~~~~~~~i~~i~~~~~~~--~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~  242 (342)
T 1yfq_A          174 WFRLPLCED---------DNGTIEESGLKYQIRDVALLPKEQ--EGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHR  242 (342)
T ss_dssp             EEESSCCTT---------CCCEEEECSCSSCEEEEEECSGGG--CEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCC
T ss_pred             EEECCcccc---------ccceeeecCCCCceeEEEECCCCC--CEEEEEecCCcEEEEEEcCCCcccccccceeeeccc
Confidence            999965 21         112334456888999999999 87  89999999999999999876      6666665 43


Q ss_pred             c---------ceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeeccc-CcCeEEEEecC-CCEEEEeC
Q 014475          219 S---------VIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDH-SKAVTCLAYST-GDLLISGS  287 (424)
Q Consensus       219 ~---------~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~-~~~l~t~~  287 (424)
                      .         .|.+++|+|++++|++++.||.|++||++++         +.+..+.+| ..+|.+++  | +++|++++
T Consensus       243 ~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~---------~~~~~~~~~h~~~v~~~~--~~~~~l~s~s  311 (342)
T 1yfq_A          243 LNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTR---------KKIKNFAKFNEDSVVKIA--CSDNILCLAT  311 (342)
T ss_dssp             CCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTT---------EEEEECCCCSSSEEEEEE--ECSSEEEEEE
T ss_pred             ccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccH---------hHhhhhhcccCCCceEec--CCCCeEEEEe
Confidence            3         8999999999999999999999999999986         567788888 99999999  6 99999999


Q ss_pred             CCCc-EEEEe
Q 014475          288 EDGM-VRVWD  296 (424)
Q Consensus       288 ~dg~-i~iwd  296 (424)
                      .||. .+.|.
T Consensus       312 ~Dg~~~~~~~  321 (342)
T 1yfq_A          312 SDDTFKTNAA  321 (342)
T ss_dssp             ECTHHHHCSS
T ss_pred             cCCccccccc
Confidence            9998 65555

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=100.00  E-value=4.1e-34  Score=257.84  Aligned_cols=290  Identities=9%  Similarity=0.021  Sum_probs=210.0

Q ss_pred             EEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCceeeeecCCCCeeEEEECCCCCEE-
Q 014475           17 CWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYI-   95 (424)
Q Consensus        17 vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l-   95 (424)
                      ||++.+.+.+.++..   |...|.+++  |+|+|+++++++.+ + +++|+.+..+......+ ..+..+++.++++.+ 
T Consensus         3 i~s~~~~~~~~~~~~---h~~~V~~v~--fs~dg~~la~g~~~-~-~~iw~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~   74 (355)
T 3vu4_A            3 LGSMITRNPIVPENH---VSNPVTDYE--FNQDQSCLILSTLK-S-FEIYNVHPVAHIMSQEM-RHLSKVRMLHRTNYVA   74 (355)
T ss_dssp             -------------------CCCCCEEE--ECTTSSEEEEECSS-E-EEEEEETTEEEEEEEEC-SCCCEEEECTTSSEEE
T ss_pred             cccccccCCcccccc---CCCceEEEE--ECCCCCEEEEEcCC-E-EEEEecCCcceeeeeec-CCeEEEEEcCCCCEEE
Confidence            566666666655544   457788888  99999999988765 4 78999887665544333 358889999988887 


Q ss_pred             EEecCCCcEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCc
Q 014475           96 AGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHT  175 (424)
Q Consensus        96 ~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  175 (424)
                      ++++.|+.|++||..+++.+..+. +...|.++.|+++.  ++++ .|+.|++||+.+..          ..+..+..  
T Consensus        75 ~~~~~d~~v~iWd~~~~~~~~~~~-~~~~v~~v~~~~~~--~~~~-~~~~i~i~d~~~~~----------~~~~~~~~--  138 (355)
T 3vu4_A           75 FVTGVKEVVHIWDDVKKQDVSRIK-VDAPVKDLFLSREF--IVVS-YGDVISVFKFGNPW----------KRITDDIR--  138 (355)
T ss_dssp             EECSSTTEEEEEETTTTEEEEEEE-CSSCEEEEEECSSE--EEEE-ETTEEEEEESSTTC----------CBSSCCEE--
T ss_pred             EEECCccEEEEEECCCCcEEEEEE-CCCceEEEEEcCCE--EEEE-EcCEEEEEECCCCc----------eeeEEecc--
Confidence            567788999999999999988887 67799999998763  4444 47899999997631          11112221  


Q ss_pred             CceeEEEEEEcCceeEEEE-EeCCCcEEEEecCCCc---------------e-eeeee-cCcceeEEEECCCCCEEEEEe
Q 014475          176 LRITDIVIGYGGVSATIVS-ASEDRTCKVWSLLKGR---------------L-LRNIV-FPSVIDAIALDPAEHVFYAGS  237 (424)
Q Consensus       176 ~~i~~~~~~~~~~~~~l~~-~~~d~~v~iwd~~~~~---------------~-~~~~~-~~~~i~~~~~~~~~~~l~~~~  237 (424)
                       +...+++++ .  ...++ |+.||.|++||+++++               + +..+. |...|.+++|+|++++|++|+
T Consensus       139 -~~~~~~~s~-~--~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s  214 (355)
T 3vu4_A          139 -FGGVCEFSN-G--LLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCS  214 (355)
T ss_dssp             -EEEEEEEET-T--EEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred             -CCceEEEEc-c--EEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEe
Confidence             333344554 2  34444 7899999999999765               1 44444 889999999999999999999


Q ss_pred             CCCc-EEEEEcCCCCCCCCCcCceeeeeec-c-cCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCCCcEE--EEE-----
Q 014475          238 RDGS-IYIAALNAESPSTSSYGMHIIGSLS-D-HSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIV--RMF-----  306 (424)
Q Consensus       238 ~dg~-i~i~d~~~~~~~~~~~~~~~~~~~~-~-~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~~--~~~-----  306 (424)
                      .|++ |++||++++         +.+..+. + |...|.+++|+| +++|++++.|++|++||++.+...  ..+     
T Consensus       215 ~d~~~v~iwd~~~~---------~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~  285 (355)
T 3vu4_A          215 QDGTIIRVFKTEDG---------VLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWIN  285 (355)
T ss_dssp             TTCSEEEEEETTTC---------CEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEE
T ss_pred             CCCCEEEEEECCCC---------cEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceee
Confidence            9998 999999986         5566676 5 999999999999 999999999999999999765321  111     


Q ss_pred             -------------e---ccCCCeeEEEEEecCceeeeccCCCceeeccCCCCC
Q 014475          307 -------------R---LAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGSQ  343 (424)
Q Consensus       307 -------------~---~~~~~v~~l~~s~~~~~l~~~~~d~~i~iw~~~~~~  343 (424)
                                   .   .+..+...++|++++++|++++.||.+++|++....
T Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~~~  338 (355)
T 3vu4_A          286 MKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSLVVVWPHTRMIETFKVVFDD  338 (355)
T ss_dssp             CCCCCCSSCSEEEECCCCTTCCCCEEEESSSSEEEEEETTTTEEEEEEEEEET
T ss_pred             ccccccccceeEEEeccCCCCCceEEEEeCCCCEEEEEeCCCeEEEEEEEcCC
Confidence                         1   112234779999999999999999999999987543

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.4e-34  Score=257.51  Aligned_cols=266  Identities=7%  Similarity=0.021  Sum_probs=199.8

Q ss_pred             eecCCCccccCCCCceeEEEEECCCCceeeeecCCCCeeEEEECCCCCEEEEecCCCcEEEEEcc---------Ccceee
Q 014475           46 FLASSQLREQPSASSGSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVA---------SGRLLK  116 (424)
Q Consensus        46 ~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~---------~~~~~~  116 (424)
                      +.+++..+++++.| |.|++||+.+++...... ...|.++.|+|+   +++++.|++|++|+..         +++.+.
T Consensus        44 ~~~d~~~l~sg~~D-g~v~iwd~~~~~~~~~~~-~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~  118 (343)
T 3lrv_A           44 MYYDKWVCMCRCED-GALHFTQLKDSKTITTIT-TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTNKVLR  118 (343)
T ss_dssp             SSEEEEEEEEEEET-TEEEEEEESSSSCEEEEE-EECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTCCEEE
T ss_pred             hcCCCCEEEEECCC-CcEEEEECCCCcEEEEEe-cCCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCCcceeE
Confidence            55677777777776 888888877766543332 456777777777   7778888888888654         455444


Q ss_pred             eec-cccCCeEEEEEcc--CCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEee-cCCcCceeEEEEEEcCceeEE
Q 014475          117 KWH-AHYRAVTCLVFSE--DGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSF-TGHTLRITDIVIGYGGVSATI  192 (424)
Q Consensus       117 ~~~-~~~~~i~~~~~~~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~l  192 (424)
                      .+. +|...|.+++|+|  +++++++++.||.|++||++++.           ..... ..|...+.+++|+|++  .+|
T Consensus       119 ~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~-----------~~~~~~~~~~~~i~~~~~~pdg--~~l  185 (343)
T 3lrv_A          119 EIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDS-----------QYIVHSAKSDVEYSSGVLHKDS--LLL  185 (343)
T ss_dssp             EEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSC-----------EEEEECCCSSCCCCEEEECTTS--CEE
T ss_pred             EeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCc-----------EEEEEecCCCCceEEEEECCCC--CEE
Confidence            443 5778999999999  99999999999999999996522           23333 3456689999999998  899


Q ss_pred             EEEeCCCcEEEEecCCCcee-eeee--cCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccC
Q 014475          193 VSASEDRTCKVWSLLKGRLL-RNIV--FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHS  269 (424)
Q Consensus       193 ~~~~~d~~v~iwd~~~~~~~-~~~~--~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~  269 (424)
                      ++|+.||.|++||+++++.. ..+.  |...|.+++|+|++.+|++++ ++.|++||++.......      +..+..|.
T Consensus       186 asg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~------~~~~~~~~  258 (343)
T 3lrv_A          186 ALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLA------YPTYTIPE  258 (343)
T ss_dssp             EEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBS------SCCCBC--
T ss_pred             EEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCccee------eccccccc
Confidence            99999999999999999877 5554  689999999999999999999 45999999998753211      22222243


Q ss_pred             cCe--EEEEecC-CCEEEEeCC-CCcEEEEeCCCCcEEEEEeccCCCeeEEEEEe---cCceeeeccCCCceeeccCC
Q 014475          270 KAV--TCLAYST-GDLLISGSE-DGMVRVWDPITHNIVRMFRLAKGPVNNILVVR---RPLYLNLGSFSNPHTSSRRH  340 (424)
Q Consensus       270 ~~i--~~~~~~~-~~~l~t~~~-dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~---~~~~l~~~~~d~~i~iw~~~  340 (424)
                      ..+  .+++|+| +++|++++. |+.|++|++.+.......    .++..+.|.+   +...|++++.|+.+.++-..
T Consensus       259 ~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~  332 (343)
T 3lrv_A          259 FKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKNWTK----DEESALCLQSDTADFTDMDVVCGDGGIAAILKT  332 (343)
T ss_dssp             ---CCEEEEECTTSSEEEEEETTTTEEEEEEECTTTCSEEE----EEEEECCC----CCCCEEEEEEETTEEEEEEEC
T ss_pred             ccccceEEEECCCCCEEEEecCCCCcEEEEEEcccccceEe----cCceeEecCccccccceeEEEecCCceEEEEec
Confidence            444  4699999 999999888 999999999766543332    5677888888   88899999999998887644

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.5e-34  Score=285.69  Aligned_cols=250  Identities=15%  Similarity=0.188  Sum_probs=210.7

Q ss_pred             CCCCceEEecceeecCCCccccCCCCceeEEEEECCCCce--e-eeecCCCCeeEEEECCC--CCEEEEecCCCcEEEEE
Q 014475           34 SPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQV--E-VKSLPAEPIKPIAANSH--GTYIAGGGQSGDIYMWE  108 (424)
Q Consensus        34 ~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~--~-~~~~~~~~v~~~~~s~~--~~~l~~~~~dg~v~iwd  108 (424)
                      +|...|.+++  |+|+++++++++.| |.|++||+.++..  . ....|.++|.+++|+|+  +++|++|+.||.|++||
T Consensus         7 gH~~~V~~l~--~s~dg~~latg~~d-g~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd   83 (753)
T 3jro_A            7 AHNELIHDAV--LDYYGKRLATCSSD-KTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWK   83 (753)
T ss_dssp             -CCCCEEEEC--CCSSSCCEEEEETT-TEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEE
T ss_pred             cCcceeEEEE--ECCCCCeEEEEECC-CcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEE
Confidence            4667899999  99999999999987 9999999974432  2 33468899999999988  99999999999999999


Q ss_pred             ccCcc--eeeeeccccCCeEEEEEccC--CcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEE
Q 014475          109 VASGR--LLKKWHAHYRAVTCLVFSED--GSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIG  184 (424)
Q Consensus       109 ~~~~~--~~~~~~~~~~~i~~~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  184 (424)
                      +.+++  .+..+.+|...|.+++|+|+  ++.+++|+.||.|++||+++.         .......+.+|...|.+++|+
T Consensus        84 ~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~---------~~~~~~~~~~~~~~v~~l~~~  154 (753)
T 3jro_A           84 EENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKEN---------GTTSPIIIDAHAIGVNSASWA  154 (753)
T ss_dssp             EETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSS---------SCCCCEEEECCSSCEEEEEEC
T ss_pred             CCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecC---------CCcceeEeecCCCceEEEEec
Confidence            99886  67778889999999999998  999999999999999999763         223344567899999999999


Q ss_pred             EcC-----------ceeEEEEEeCCCcEEEEecCCCc----eeeeee-cCcceeEEEECCC---CCEEEEEeCCCcEEEE
Q 014475          185 YGG-----------VSATIVSASEDRTCKVWSLLKGR----LLRNIV-FPSVIDAIALDPA---EHVFYAGSRDGSIYIA  245 (424)
Q Consensus       185 ~~~-----------~~~~l~~~~~d~~v~iwd~~~~~----~~~~~~-~~~~i~~~~~~~~---~~~l~~~~~dg~i~i~  245 (424)
                      |..           ++..+++++.||.|++||++++.    ....+. |...|.+++|+|+   +.++++++.||.|++|
T Consensus       155 p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iw  234 (753)
T 3jro_A          155 PATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIW  234 (753)
T ss_dssp             CCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEE
T ss_pred             CcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEe
Confidence            941           12899999999999999998773    334444 7889999999999   8999999999999999


Q ss_pred             EcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCC
Q 014475          246 ALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPIT  299 (424)
Q Consensus       246 d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~  299 (424)
                      |++.+.....    ........|...|++++|+| +.++++|+.||.|++||+.+
T Consensus       235 d~~~~~~~~~----~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~  285 (753)
T 3jro_A          235 TQDNEQGPWK----KTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL  285 (753)
T ss_dssp             EESSSSSCCB----CCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCS
T ss_pred             cCCCCCCcce----eEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCC
Confidence            9988642111    22334456889999999999 99999999999999999874

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=100.00  E-value=1.1e-33  Score=256.30  Aligned_cols=268  Identities=10%  Similarity=0.122  Sum_probs=219.5

Q ss_pred             EEEeecCCCCCceEEEeCCC-CceE-EEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCceeeeecCC
Q 014475            3 LLIASSSVADTGIGCWDLES-GAEQ-LRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSLPA   80 (424)
Q Consensus         3 ~~lat~~~~dg~i~vwd~~~-~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~~~~~   80 (424)
                      .+||+++ .||.|+|||+++ +..+ ..+..   |...|.+++  |+|+++++++++.| |.|++||+.+++......|.
T Consensus        55 ~~l~~~~-~dg~i~iw~~~~~~~~~~~~~~~---h~~~v~~~~--~~~~~~~l~s~~~d-g~v~iwd~~~~~~~~~~~~~  127 (368)
T 3mmy_A           55 NFLIAGS-WANDVRCWEVQDSGQTIPKAQQM---HTGPVLDVC--WSDDGSKVFTASCD-KTAKMWDLSSNQAIQIAQHD  127 (368)
T ss_dssp             EEEEEEE-TTSEEEEEEECTTSCEEEEEEEE---CSSCEEEEE--ECTTSSEEEEEETT-SEEEEEETTTTEEEEEEECS
T ss_pred             eEEEEEC-CCCcEEEEEcCCCCceeEEEecc---ccCCEEEEE--ECcCCCEEEEEcCC-CcEEEEEcCCCCceeecccc
Confidence            6899999 999999999997 5555 55555   446788888  99999999999988 99999999999888778899


Q ss_pred             CCeeEEEE--CCCCCEEEEecCCCcEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchh
Q 014475           81 EPIKPIAA--NSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEEC  158 (424)
Q Consensus        81 ~~v~~~~~--s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~  158 (424)
                      .+|.+++|  +|++++|++++.||.|++||+++++.+..+..+. .+.++.+.+  ..+++++.++.+++|+++...   
T Consensus       128 ~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-~~~~~~~~~--~~~~~~~~~~~i~~~~~~~~~---  201 (368)
T 3mmy_A          128 APVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPE-RCYCADVIY--PMAVVATAERGLIVYQLENQP---  201 (368)
T ss_dssp             SCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSS-CEEEEEEET--TEEEEEEGGGCEEEEECSSSC---
T ss_pred             CceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCC-CceEEEecC--CeeEEEeCCCcEEEEEecccc---
Confidence            99999999  9999999999999999999999999988888664 577777764  478889999999999997622   


Q ss_pred             cccccccceEEeecCCcCceeEEEEEEcCc--eeEEEEEeCCCcEEEEecCCC---ceeeeee-cCc------------c
Q 014475          159 ESQRASHLYLHSFTGHTLRITDIVIGYGGV--SATIVSASEDRTCKVWSLLKG---RLLRNIV-FPS------------V  220 (424)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~~~l~~~~~d~~v~iwd~~~~---~~~~~~~-~~~------------~  220 (424)
                            .........+...+.++.+.+...  ...+++++.||.|++||++..   +....+. +..            .
T Consensus       202 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (368)
T 3mmy_A          202 ------SEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYA  275 (368)
T ss_dssp             ------EEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECC
T ss_pred             ------chhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeecccccccccccccc
Confidence                  112222233445566666666542  244999999999999999887   4445554 332            6


Q ss_pred             eeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCC
Q 014475          221 IDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPI  298 (424)
Q Consensus       221 i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~  298 (424)
                      |.+++|+|++++|++++.||.|++||++++         ..+..+..|..+|++++|+| +.+|++++.|+..+.|++.
T Consensus       276 v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~---------~~~~~~~~~~~~v~~~~~s~~g~~l~~~s~d~~~~~~~~~  345 (368)
T 3mmy_A          276 VNGIAFHPVHGTLATVGSDGRFSFWDKDAR---------TKLKTSEQLDQPISACCFNHNGNIFAYASSYDWSKGHEFY  345 (368)
T ss_dssp             EEEEEECTTTCCEEEEETTSCEEEEETTTT---------EEEEECCCCSSCEEEEEECTTSSCEEEEECCCSTTCGGGC
T ss_pred             eEEEEEecCCCEEEEEccCCeEEEEECCCC---------cEEEEecCCCCCceEEEECCCCCeEEEEeccccccccccc
Confidence            999999999999999999999999999986         66788889999999999999 9999999988765555543

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=100.00  E-value=8.4e-35  Score=266.06  Aligned_cols=280  Identities=9%  Similarity=0.019  Sum_probs=199.0

Q ss_pred             eecCCCccccCCCCceeEEEEECCCCce----------eeeecCCCCeeEEEE--------------------CCCCCEE
Q 014475           46 FLASSQLREQPSASSGSILYWSWSKPQV----------EVKSLPAEPIKPIAA--------------------NSHGTYI   95 (424)
Q Consensus        46 ~~~~~~~l~~~~~~~g~i~vwd~~~~~~----------~~~~~~~~~v~~~~~--------------------s~~~~~l   95 (424)
                      ..+++..+++++.+ +.|.+|+......          .....+..++..+.|                    ++++.+|
T Consensus        26 ~~~~~~~l~a~g~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  104 (393)
T 4gq1_A           26 QSPSCSNLLAIGHD-TGITIYCASEEQTPGSTGLTLQELFTIQTGLPTLHLSFSSSCSYSENLHDGDGNVNSSPVYSLFL  104 (393)
T ss_dssp             TSGGGTTEEEEEES-SEEEEEEEEECCSSSCCSEEEEEEEEEECSSCEEEEEECTTCEEECC----------CCEEEEEE
T ss_pred             CCCCCCCEEEEECC-CCEEEEECCCCCcccccccceeeeEEEecCCCeeeEeecCCccccccccCCCcceeecCCCCCEE
Confidence            45666666666665 7888887542210          111123334444444                    3456689


Q ss_pred             EEecCCCcEEEEEccCccee-----eeeccccCCeEEEEEcc--------CCcEEEEeeCCCcEEEEeCCcccchhcccc
Q 014475           96 AGGGQSGDIYMWEVASGRLL-----KKWHAHYRAVTCLVFSE--------DGSFLISGSEDGCVRIWSLLTVFEECESQR  162 (424)
Q Consensus        96 ~~~~~dg~v~iwd~~~~~~~-----~~~~~~~~~i~~~~~~~--------~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~  162 (424)
                      ++++.|++|++||.++++..     ..+.+|.+.|++++|+|        ++++|++|+.|++|+|||+++         
T Consensus       105 as~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~---------  175 (393)
T 4gq1_A          105 ACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTD---------  175 (393)
T ss_dssp             EEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEET---------
T ss_pred             EEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCC---------
Confidence            99999999999999887543     34688999999999997        789999999999999999954         


Q ss_pred             cccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeee--------------------------e
Q 014475          163 ASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNI--------------------------V  216 (424)
Q Consensus       163 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~--------------------------~  216 (424)
                        .........|..++.+++|+|++. .+|++++.|++|++||+++++.....                          .
T Consensus       176 --~~~~~~~~~~~~~v~~v~~~p~~~-~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~  252 (393)
T 4gq1_A          176 --EGPILAGYPLSSPGISVQFRPSNP-NQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSG  252 (393)
T ss_dssp             --TEEEEEEEECSSCEEEEEEETTEE-EEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------C
T ss_pred             --CceeeeecCCCCCcEEEEECCCCC-ceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeeccc
Confidence              334556677899999999999863 58999999999999999887644322                          1


Q ss_pred             cCcceeEEEEC-CCCCEEEEEeCCCcEEEEEcCCCCCCCCCcC----------ceeeeeecccCcCeEEEEecC--CCEE
Q 014475          217 FPSVIDAIALD-PAEHVFYAGSRDGSIYIAALNAESPSTSSYG----------MHIIGSLSDHSKAVTCLAYST--GDLL  283 (424)
Q Consensus       217 ~~~~i~~~~~~-~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~----------~~~~~~~~~~~~~i~~~~~~~--~~~l  283 (424)
                      +...+.++.|+ |+++.+++++.|+.+++||+...........          .........+...+..+.+.+  +.++
T Consensus       253 ~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  332 (393)
T 4gq1_A          253 IASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFA  332 (393)
T ss_dssp             CSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEECSSCTTEEE
T ss_pred             ccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEccCCCCEEE
Confidence            34567788876 7999999999999999999977542211000          000111222223333333333  3467


Q ss_pred             EEeCCCCcEEEEeCCCCcEEEEEeccCCCeeEEEEEecCceeeeccCCCceeeccC
Q 014475          284 ISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRR  339 (424)
Q Consensus       284 ~t~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~d~~i~iw~~  339 (424)
                      ++|+.||.|++||+.+++++..+..|..+|.+++|+|||++||+++.+| +.+|++
T Consensus       333 ~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~svafspdG~~LA~as~~G-v~lvrL  387 (393)
T 4gq1_A          333 TAHSQHGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQDGSHLAIATEGS-VLLTRL  387 (393)
T ss_dssp             EEETTTTEEEEEETTCTTCCEEEEECSSCEEEEEECTTSSEEEEEESSE-EEEEEE
T ss_pred             EEECCCCEEEEEECCCCcEEEEecCCCCcEEEEEEcCCCCEEEEEeCCC-eEEEEE
Confidence            7888999999999999999999899999999999999999999998777 555544

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=9.6e-33  Score=257.37  Aligned_cols=237  Identities=14%  Similarity=0.150  Sum_probs=196.0

Q ss_pred             ceEEecceeecCCCcc-ccCCCCceeEEEEECC--CCceeeee---cCCCCeeEEEECCCCCEEEEecCCCcEEEEEccC
Q 014475           38 GLACVGQRFLASSQLR-EQPSASSGSILYWSWS--KPQVEVKS---LPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVAS  111 (424)
Q Consensus        38 ~v~~~~~~~~~~~~~l-~~~~~~~g~i~vwd~~--~~~~~~~~---~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~  111 (424)
                      .|.+++  |+|++++| ++++.+ |.|++||+.  +++.....   .+...|.+++|+|++++|++|+.+|.|++|++.+
T Consensus       104 ~v~~~~--~s~d~~~l~~~~~~d-g~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~~~~  180 (450)
T 2vdu_B          104 YIRNLR--LTSDESRLIACADSD-KSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADKFGDVYSIDINS  180 (450)
T ss_dssp             CEEEEE--ECTTSSEEEEEEGGG-TEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTS
T ss_pred             ceEEEE--EcCCCCEEEEEECCC-CeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEeCCCcEEEEecCC
Confidence            588999  99999997 666666 999999998  65544332   5678999999999999999999999999999988


Q ss_pred             cceee----eeccccCCeEEEEEccC---CcEEEEeeCCCcEEEEeCCcccchhcccccccceEEe-ecCCcCceeEEEE
Q 014475          112 GRLLK----KWHAHYRAVTCLVFSED---GSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHS-FTGHTLRITDIVI  183 (424)
Q Consensus       112 ~~~~~----~~~~~~~~i~~~~~~~~---~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~  183 (424)
                      ++...    .+.+|...|.+++|+|+   +++|++++.|+.|++||++++           ..+.. +.+|...|.+++|
T Consensus       181 ~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~-----------~~~~~~~~~h~~~v~~~~~  249 (450)
T 2vdu_B          181 IPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQC-----------FIVDKWLFGHKHFVSSICC  249 (450)
T ss_dssp             CCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCT-----------TCEEEECCCCSSCEEEEEE
T ss_pred             cccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCC-----------ceeeeeecCCCCceEEEEE
Confidence            87554    77889999999999999   999999999999999999652           23334 5689999999999


Q ss_pred             EEcCceeEEEEEeCCCcEEEEecCCCceeeeeec--------------------------CcceeEEEECCCCCEEEEEe
Q 014475          184 GYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVF--------------------------PSVIDAIALDPAEHVFYAGS  237 (424)
Q Consensus       184 ~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~--------------------------~~~i~~~~~~~~~~~l~~~~  237 (424)
                      + ++  .+|++++.|+.|++||+++++++..+..                          ...+..++|+|+++++++++
T Consensus       250 s-d~--~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~  326 (450)
T 2vdu_B          250 G-KD--YLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFV  326 (450)
T ss_dssp             C-ST--TEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEE
T ss_pred             C-CC--CEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEE
Confidence            9 77  8999999999999999999998877752                          24688999999999999999


Q ss_pred             -CCCcEEEEEc--CCCCCCCCCcCceeeeeecccCcCeEEEEecCCCEEEEeCC-------CCcEEEEeCC
Q 014475          238 -RDGSIYIAAL--NAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTGDLLISGSE-------DGMVRVWDPI  298 (424)
Q Consensus       238 -~dg~i~i~d~--~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~t~~~-------dg~i~iwd~~  298 (424)
                       .++.|++|++  ....      ....+..+..| ..|.+++|+|+.++++.+.       +..|.+|.+.
T Consensus       327 ~~d~~i~iw~~~~~~~~------~l~~~~~~~~~-~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~~~  390 (450)
T 2vdu_B          327 EATKCIIILEMSEKQKG------DLALKQIITFP-YNVISLSAHNDEFQVTLDNKESSGVQKNFAKFIEYN  390 (450)
T ss_dssp             TTCSEEEEEEECSSSTT------CEEEEEEEECS-SCEEEEEEETTEEEEEECCTTCCSSCCCSEEEEEEE
T ss_pred             CCCCeEEEEEeccCCCC------ceeeccEeccC-CceEEEEecCCcEEEEEecccCCCCCCcceEEEEEE
Confidence             8999999999  3321      12456667777 8899999999555555443       4557888754

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=100.00  E-value=4.5e-33  Score=257.92  Aligned_cols=254  Identities=14%  Similarity=0.207  Sum_probs=207.5

Q ss_pred             CCCceEEecceeecC-CCccccCCCCceeEEEEECCC----------Cc-eeeeecCCCCeeEEEECCCCC-EEEEecCC
Q 014475           35 PPHGLACVGQRFLAS-SQLREQPSASSGSILYWSWSK----------PQ-VEVKSLPAEPIKPIAANSHGT-YIAGGGQS  101 (424)
Q Consensus        35 ~~~~v~~~~~~~~~~-~~~l~~~~~~~g~i~vwd~~~----------~~-~~~~~~~~~~v~~~~~s~~~~-~l~~~~~d  101 (424)
                      |...|.+++  |+|+ +.++++++.+ |.|++|++..          .. ......|...|.+++|+|++. +|++|+.|
T Consensus       127 h~~~v~~l~--~~p~~~~~lat~~~d-g~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d  203 (430)
T 2xyi_A          127 HEGEVNRAR--YMPQNACVIATKTPS-SDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDD  203 (430)
T ss_dssp             ESSCCSEEE--EETTEEEEEEEECSS-SCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECTT
T ss_pred             CCCcEEEEE--ECCCCCcEEEEECCC-CcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCC
Confidence            456788888  9997 6788888877 9999999975          22 223456889999999999988 99999999


Q ss_pred             CcEEEEEccCcce-------eeeeccccCCeEEEEEcc-CCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecC
Q 014475          102 GDIYMWEVASGRL-------LKKWHAHYRAVTCLVFSE-DGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTG  173 (424)
Q Consensus       102 g~v~iwd~~~~~~-------~~~~~~~~~~i~~~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  173 (424)
                      |.|++||+.++..       ...+.+|...|.+++|+| ++.+|++++.||.|++||+++..        .......+..
T Consensus       204 g~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~--------~~~~~~~~~~  275 (430)
T 2xyi_A          204 HTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNN--------TSKPSHTVDA  275 (430)
T ss_dssp             SCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSC--------SSSCSEEEEC
T ss_pred             CeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCC--------CCcceeEeec
Confidence            9999999987422       455678999999999999 78899999999999999997631        1234555678


Q ss_pred             CcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCC-Cceeeeee-cCcceeEEEECCCCC-EEEEEeCCCcEEEEEcCCC
Q 014475          174 HTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLK-GRLLRNIV-FPSVIDAIALDPAEH-VFYAGSRDGSIYIAALNAE  250 (424)
Q Consensus       174 ~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~-~~~~~~~~-~~~~i~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~  250 (424)
                      |...|++++|+|++. ..+++++.||.|++||+++ ++++..+. |...|.+++|+|++. +|++++.|+.|++||+...
T Consensus       276 ~~~~v~~i~~~p~~~-~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~  354 (430)
T 2xyi_A          276 HTAEVNCLSFNPYSE-FILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKI  354 (430)
T ss_dssp             CSSCEEEEEECSSCT-TEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGT
T ss_pred             CCCCeEEEEeCCCCC-CEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCC
Confidence            999999999999873 4799999999999999998 45666666 889999999999885 6899999999999999874


Q ss_pred             CCCCC-----CcCceeeeeecccCcCeEEEEecC-CC-EEEEeCCCCcEEEEeCCCC
Q 014475          251 SPSTS-----SYGMHIIGSLSDHSKAVTCLAYST-GD-LLISGSEDGMVRVWDPITH  300 (424)
Q Consensus       251 ~~~~~-----~~~~~~~~~~~~~~~~i~~~~~~~-~~-~l~t~~~dg~i~iwd~~~~  300 (424)
                      .....     ......+..+.+|...|++++|+| +. +|++++.||.|++|++...
T Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~  411 (430)
T 2xyi_A          355 GEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAEN  411 (430)
T ss_dssp             TCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred             ccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEcccc
Confidence            32110     001245667788999999999999 77 8999999999999998754

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=100.00  E-value=4.2e-32  Score=248.47  Aligned_cols=266  Identities=14%  Similarity=0.104  Sum_probs=219.6

Q ss_pred             ccccCCCCceeEEEEECCCCceeeeecCCCCeeEEEECCCCCEE-EEecCCCcEEEEEccCcceeeeeccccCCeEEEEE
Q 014475           52 LREQPSASSGSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYI-AGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVF  130 (424)
Q Consensus        52 ~l~~~~~~~g~i~vwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~  130 (424)
                      .+++++.+ +.|++||+.+++......+...+.+++|+|+++++ ++++.|+.|++||+.+++.+..+..+. .+.+++|
T Consensus         4 l~vs~~~d-~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~v~~~~~   81 (391)
T 1l0q_A            4 AYIANSES-DNISVIDVTSNKVTATIPVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVAV   81 (391)
T ss_dssp             EEEEETTT-TEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEEE
T ss_pred             EEEEcCCC-CEEEEEECCCCeEEEEeecCCCcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCC-CccceEE
Confidence            34555555 99999999988877666666779999999999977 677789999999999999988887655 8999999


Q ss_pred             ccCCcEEEEe-eCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEE-EEEeCCCcEEEEecCC
Q 014475          131 SEDGSFLISG-SEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATI-VSASEDRTCKVWSLLK  208 (424)
Q Consensus       131 ~~~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l-~~~~~d~~v~iwd~~~  208 (424)
                      +|++++++++ +.++.|++||+.++           ..+..+. +...+.+++|++++  +.+ ++++.++.|++||+.+
T Consensus        82 spdg~~l~~~~~~~~~v~v~d~~~~-----------~~~~~~~-~~~~~~~~~~s~dg--~~l~~~~~~~~~v~~~d~~~  147 (391)
T 1l0q_A           82 SPDGKQVYVTNMASSTLSVIDTTSN-----------TVAGTVK-TGKSPLGLALSPDG--KKLYVTNNGDKTVSVINTVT  147 (391)
T ss_dssp             CTTSSEEEEEETTTTEEEEEETTTT-----------EEEEEEE-CSSSEEEEEECTTS--SEEEEEETTTTEEEEEETTT
T ss_pred             CCCCCEEEEEECCCCEEEEEECCCC-----------eEEEEEe-CCCCcceEEECCCC--CEEEEEeCCCCEEEEEECCC
Confidence            9999987554 46799999999652           2333344 34467899999998  555 7888899999999999


Q ss_pred             CceeeeeecCcceeEEEECCCCCEE-EEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEe
Q 014475          209 GRLLRNIVFPSVIDAIALDPAEHVF-YAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISG  286 (424)
Q Consensus       209 ~~~~~~~~~~~~i~~~~~~~~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~  286 (424)
                      ++.+..+.....+..++|+|+++.+ ++++.++.|++||++++         +....+. +...+.+++|+| +++++++
T Consensus       148 ~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~---------~~~~~~~-~~~~~~~~~~~~~g~~l~~~  217 (391)
T 1l0q_A          148 KAVINTVSVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTN---------SVIDTVK-VEAAPSGIAVNPEGTKAYVT  217 (391)
T ss_dssp             TEEEEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTT---------EEEEEEE-CSSEEEEEEECTTSSEEEEE
T ss_pred             CcEEEEEecCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCC---------eEEEEEe-cCCCccceEECCCCCEEEEE
Confidence            9998888877788999999999887 56678899999999886         3333333 556789999999 8888888


Q ss_pred             C---CCCcEEEEeCCCCcEEEEEeccCCCeeEEEEEecCcee-eeccCCCceeeccCCCCCC
Q 014475          287 S---EDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYL-NLGSFSNPHTSSRRHGSQL  344 (424)
Q Consensus       287 ~---~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l-~~~~~d~~i~iw~~~~~~~  344 (424)
                      +   .++.|++||+.+++.+..+..|. .+.+++|+|++++| ++++.|+.|++||+.++++
T Consensus       218 ~~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~  278 (391)
T 1l0q_A          218 NVDKYFNTVSMIDTGTNKITARIPVGP-DPAGIAVTPDGKKVYVALSFXNTVSVIDTATNTI  278 (391)
T ss_dssp             EECSSCCEEEEEETTTTEEEEEEECCS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEE
T ss_pred             ecCcCCCcEEEEECCCCeEEEEEecCC-CccEEEEccCCCEEEEEcCCCCEEEEEECCCCcE
Confidence            7   68999999999999999988765 57899999999887 6778999999999987654

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=100.00  E-value=4.4e-31  Score=238.02  Aligned_cols=278  Identities=12%  Similarity=0.089  Sum_probs=206.1

Q ss_pred             EEeecCCCCCceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCceeeeecCCCCe
Q 014475            4 LIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSLPAEPI   83 (424)
Q Consensus         4 ~lat~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~~~~~~~v   83 (424)
                      +||+|+ .|| ++|||+.+++........     ++..++  +.++++.++.++..+++|++||..+++......+..+|
T Consensus        33 ~la~g~-~~~-~~iw~~~~~~~~~~~~~~-----~~~~~~--~~~~~~~~~~~~~~d~~v~iWd~~~~~~~~~~~~~~~v  103 (355)
T 3vu4_A           33 CLILST-LKS-FEIYNVHPVAHIMSQEMR-----HLSKVR--MLHRTNYVAFVTGVKEVVHIWDDVKKQDVSRIKVDAPV  103 (355)
T ss_dssp             EEEEEC-SSE-EEEEEETTEEEEEEEECS-----CCCEEE--ECTTSSEEEEECSSTTEEEEEETTTTEEEEEEECSSCE
T ss_pred             EEEEEc-CCE-EEEEecCCcceeeeeecC-----CeEEEE--EcCCCCEEEEEECCccEEEEEECCCCcEEEEEECCCce
Confidence            678888 665 789999988776554322     356666  88888888654444499999999998887777788899


Q ss_pred             eEEEECCCCCEEEEecCCCcEEEEEccCc-ceeeeeccccCCeEEEEEccCCcEEEE--eeCCCcEEEEeCCcccchhcc
Q 014475           84 KPIAANSHGTYIAGGGQSGDIYMWEVASG-RLLKKWHAHYRAVTCLVFSEDGSFLIS--GSEDGCVRIWSLLTVFEECES  160 (424)
Q Consensus        84 ~~~~~s~~~~~l~~~~~dg~v~iwd~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~s--~~~dg~i~iwd~~~~~~~~~~  160 (424)
                      .+++|+++.  ++++ .++.|++||+.++ +.+..+..   +...+++++  .+++.  |+.||.|++||++++......
T Consensus       104 ~~v~~~~~~--~~~~-~~~~i~i~d~~~~~~~~~~~~~---~~~~~~~s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~  175 (355)
T 3vu4_A          104 KDLFLSREF--IVVS-YGDVISVFKFGNPWKRITDDIR---FGGVCEFSN--GLLVYSNEFNLGQIHITKLQSSGSATTQ  175 (355)
T ss_dssp             EEEEECSSE--EEEE-ETTEEEEEESSTTCCBSSCCEE---EEEEEEEET--TEEEEEESSCTTCEEEEECCC-------
T ss_pred             EEEEEcCCE--EEEE-EcCEEEEEECCCCceeeEEecc---CCceEEEEc--cEEEEeCCCcCcEEEEEECCCCCccccc
Confidence            999999865  3333 3789999999988 77766654   445566776  55665  688999999999764311100


Q ss_pred             c----ccccce-EEeecCCcCceeEEEEEEcCceeEEEEEeCCCc-EEEEecCCCceeeeee---cCcceeEEEECCCCC
Q 014475          161 Q----RASHLY-LHSFTGHTLRITDIVIGYGGVSATIVSASEDRT-CKVWSLLKGRLLRNIV---FPSVIDAIALDPAEH  231 (424)
Q Consensus       161 ~----~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~-v~iwd~~~~~~~~~~~---~~~~i~~~~~~~~~~  231 (424)
                      .    .....+ +..+.+|...|++++|+|++  .+|++++.|++ |++||+++++++..+.   |...|.+++|+|+++
T Consensus       176 ~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g--~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~  253 (355)
T 3vu4_A          176 DQGVQQKAILGKGVLIKAHTNPIKMVRLNRKS--DMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGS  253 (355)
T ss_dssp             -----------CCEEECCCSSCEEEEEECTTS--SEEEEEETTCSEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSC
T ss_pred             cccccccccCcccEEEEccCCceEEEEECCCC--CEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCC
Confidence            0    001112 56788999999999999998  89999999998 9999999999999997   889999999999999


Q ss_pred             EEEEEeCCCcEEEEEcCCCCCCCCCc--------------CceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEe
Q 014475          232 VFYAGSRDGSIYIAALNAESPSTSSY--------------GMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWD  296 (424)
Q Consensus       232 ~l~~~~~dg~i~i~d~~~~~~~~~~~--------------~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd  296 (424)
                      +|++++.|+.|++||++.........              ..........+......++|++ ++.+++++.||.+++|+
T Consensus       254 ~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~  333 (355)
T 3vu4_A          254 KLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSLVVVWPHTRMIETFK  333 (355)
T ss_dssp             EEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEESSSSEEEEEETTTTEEEEEE
T ss_pred             EEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCCCCceEEEEeCCCCEEEEEeCCCeEEEEE
Confidence            99999999999999998754221100              0000001111223347789999 88999999999999999


Q ss_pred             CCCC
Q 014475          297 PITH  300 (424)
Q Consensus       297 ~~~~  300 (424)
                      +..+
T Consensus       334 ~~~~  337 (355)
T 3vu4_A          334 VVFD  337 (355)
T ss_dssp             EEEE
T ss_pred             EEcC
Confidence            7653

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=7.8e-33  Score=248.61  Aligned_cols=238  Identities=9%  Similarity=-0.044  Sum_probs=190.8

Q ss_pred             EECCCCCEEEEecCCCcEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccc
Q 014475           87 AANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHL  166 (424)
Q Consensus        87 ~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~  166 (424)
                      .+.+++.++++|+.||.|++||+.+++.+..+.  ...|.++.|+|+   +++++.|+.|++|+..........  ....
T Consensus        43 ~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~--~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~--~~~~  115 (343)
T 3lrv_A           43 SMYYDKWVCMCRCEDGALHFTQLKDSKTITTIT--TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDS--KTNK  115 (343)
T ss_dssp             SSSEEEEEEEEEEETTEEEEEEESSSSCEEEEE--EECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEET--TTCC
T ss_pred             hhcCCCCEEEEECCCCcEEEEECCCCcEEEEEe--cCCceeeeeCCc---eEEecCCCeEEEEEccCceEEeec--CCcc
Confidence            345688999999999999999999999888776  467888899987   999999999999998642211111  1122


Q ss_pred             eEEee-cCCcCceeEEEEEE--cCceeEEEEEeCCCcEEEEecCCCceeeeee--cCcceeEEEECCCCCEEEEEeCCCc
Q 014475          167 YLHSF-TGHTLRITDIVIGY--GGVSATIVSASEDRTCKVWSLLKGRLLRNIV--FPSVIDAIALDPAEHVFYAGSRDGS  241 (424)
Q Consensus       167 ~~~~~-~~~~~~i~~~~~~~--~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~dg~  241 (424)
                      .+... ..|..+|.+++|+|  ++  +++++++.||+|++||+++++......  +...+.+++|+|++.++++|+.||.
T Consensus       116 ~~~~~~~~~~~~v~~~~~~~~~~~--~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~  193 (343)
T 3lrv_A          116 VLREIEVDSANEIIYMYGHNEVNT--EYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGI  193 (343)
T ss_dssp             EEEEEECCCSSCEEEEECCC---C--CEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSC
T ss_pred             eeEEeecCCCCCEEEEEcCCCCCC--CEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCE
Confidence            22222 36778999999999  77  899999999999999999998866553  5567999999999999999999999


Q ss_pred             EEEEEcCCCCCCCCCcCceeeeeecc-cCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCCCcEEEEEec---cCCCee--
Q 014475          242 IYIAALNAESPSTSSYGMHIIGSLSD-HSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRL---AKGPVN--  314 (424)
Q Consensus       242 i~i~d~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~~~~~~~---~~~~v~--  314 (424)
                      |++||++++.        .....+.. |..+|++++|+| +.+|++++ |+.|++||+++++.+..+..   |..++.  
T Consensus       194 i~iwd~~~~~--------~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~  264 (343)
T 3lrv_A          194 LDVYNLSSPD--------QASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTV  264 (343)
T ss_dssp             EEEEESSCTT--------SCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSCCCBC-----CCE
T ss_pred             EEEEECCCCC--------CCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeecccccccccccce
Confidence            9999999874        22245666 999999999999 99999999 55999999999887665543   444554  


Q ss_pred             EEEEEecCceeeeccC-CCceeeccCCCC
Q 014475          315 NILVVRRPLYLNLGSF-SNPHTSSRRHGS  342 (424)
Q Consensus       315 ~l~~s~~~~~l~~~~~-d~~i~iw~~~~~  342 (424)
                      +++|+|++++|++++. |+.+++|++...
T Consensus       265 ~~~~~~~g~~l~~~s~~d~~i~v~~~~~~  293 (343)
T 3lrv_A          265 TYDIDDSGKNMIAYSNESNSLTIYKFDKK  293 (343)
T ss_dssp             EEEECTTSSEEEEEETTTTEEEEEEECTT
T ss_pred             EEEECCCCCEEEEecCCCCcEEEEEEccc
Confidence            5999999999999888 999999998644

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=100.00  E-value=8e-31  Score=248.24  Aligned_cols=320  Identities=13%  Similarity=0.086  Sum_probs=250.1

Q ss_pred             EEEeecCCCCCceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEEC--CCCceeeeecCC
Q 014475            3 LLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSW--SKPQVEVKSLPA   80 (424)
Q Consensus         3 ~~lat~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~--~~~~~~~~~~~~   80 (424)
                      .++++++ .|++|.+||..+++++.++.....    +..++  |+|+|+++++++.+ +.|.+||+  .+.+......+.
T Consensus       150 ~~~vs~~-~d~~V~v~D~~t~~~~~~i~~g~~----~~~v~--~spdg~~l~v~~~d-~~V~v~D~~~~t~~~~~~i~~g  221 (543)
T 1nir_A          150 LFSVTLR-DAGQIALVDGDSKKIVKVIDTGYA----VHISR--MSASGRYLLVIGRD-ARIDMIDLWAKEPTKVAEIKIG  221 (543)
T ss_dssp             EEEEEEG-GGTEEEEEETTTCCEEEEEECSTT----EEEEE--ECTTSCEEEEEETT-SEEEEEETTSSSCEEEEEEECC
T ss_pred             EEEEEEc-CCCeEEEEECCCceEEEEEecCcc----cceEE--ECCCCCEEEEECCC-CeEEEEECcCCCCcEEEEEecC
Confidence            4677888 899999999999999999874322    66777  99999999999998 99999999  676665555567


Q ss_pred             CCeeEEEECC----CCCEEEEecC-CCcEEEEEccCcceeeeecc----------cc-CCeEEEEEccCCc-EEEEeeCC
Q 014475           81 EPIKPIAANS----HGTYIAGGGQ-SGDIYMWEVASGRLLKKWHA----------HY-RAVTCLVFSEDGS-FLISGSED  143 (424)
Q Consensus        81 ~~v~~~~~s~----~~~~l~~~~~-dg~v~iwd~~~~~~~~~~~~----------~~-~~i~~~~~~~~~~-~l~s~~~d  143 (424)
                      ..+..++|+|    ||+++++++. +++|.+||..+++++..+..          |. ..+..+.++|++. ++++...+
T Consensus       222 ~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~  301 (543)
T 1nir_A          222 IEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKET  301 (543)
T ss_dssp             SEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTT
T ss_pred             CCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCC
Confidence            7889999999    9999999884 89999999999998887754          22 3789999999665 45667778


Q ss_pred             CcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEE-EEeCCCcEEEEecCCCceeeeee-----c
Q 014475          144 GCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIV-SASEDRTCKVWSLLKGRLLRNIV-----F  217 (424)
Q Consensus       144 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~-~~~~d~~v~iwd~~~~~~~~~~~-----~  217 (424)
                      +.|.+||+.+..         ...+..+ .+...+.++.|+|++  ++++ ++..+++|.+||..+++++..+.     |
T Consensus       302 g~i~vvd~~~~~---------~l~~~~i-~~~~~~~~~~~spdg--~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph  369 (543)
T 1nir_A          302 GKVLLVNYKDID---------NLTVTSI-GAAPFLHDGGWDSSH--RYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPH  369 (543)
T ss_dssp             TEEEEEECTTSS---------SCEEEEE-ECCSSCCCEEECTTS--CEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBC
T ss_pred             CeEEEEEecCCC---------cceeEEe-ccCcCccCceECCCC--CEEEEEecCCCeEEEEECCCCeEEEeeccCCCCC
Confidence            999999996621         1112223 245667889999998  6655 44568999999999999888776     3


Q ss_pred             CcceeEEEECCC-CCEEEEEe-CCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeC-------
Q 014475          218 PSVIDAIALDPA-EHVFYAGS-RDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGS-------  287 (424)
Q Consensus       218 ~~~i~~~~~~~~-~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~-------  287 (424)
                      +.....+ ++|+ +..++++. .|++|.+||+.+...  ....++.+..+..|...+..++++| +++|++++       
T Consensus       370 ~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~--~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~  446 (543)
T 1nir_A          370 PGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNH--PQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDAR  446 (543)
T ss_dssp             CTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTC--TTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHH
T ss_pred             CCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCC--chhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcc
Confidence            3223333 4676 55566665 579999999987321  1222477889999998999999999 99999987       


Q ss_pred             CCCcEEEEeCCCCcEE-EEE--------eccCCCeeEEEEEecCceeeec-----cCCCceeeccCCCCCCC
Q 014475          288 EDGMVRVWDPITHNIV-RMF--------RLAKGPVNNILVVRRPLYLNLG-----SFSNPHTSSRRHGSQLP  345 (424)
Q Consensus       288 ~dg~i~iwd~~~~~~~-~~~--------~~~~~~v~~l~~s~~~~~l~~~-----~~d~~i~iw~~~~~~~~  345 (424)
                      .+++|.+||+.+++.. ..+        ..+...+..+.|+|+|+.|.++     +.|+.|.+||..+.++.
T Consensus       447 ~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~t~~~~  518 (543)
T 1nir_A          447 ISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLK  518 (543)
T ss_dssp             HHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEETTTTEEE
T ss_pred             cCceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEECCCceEE
Confidence            2779999999999877 444        2456789999999999999865     35899999999988754

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=100.00  E-value=4e-30  Score=238.55  Aligned_cols=269  Identities=17%  Similarity=0.162  Sum_probs=219.6

Q ss_pred             EEEeecCCCCCceEEEeCCCCceEEEeeC--CCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCceeee-ecC
Q 014475            3 LLIASSSVADTGIGCWDLESGAEQLRYKS--CASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVK-SLP   79 (424)
Q Consensus         3 ~~lat~~~~dg~i~vwd~~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~-~~~   79 (424)
                      .++++++ .|+.|++||+.+++....+..  ...|...+.+++  |+++++++++++.+ +.|++||+++++.... ..+
T Consensus       135 ~~~~~~~-~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~--~~~~~~~~~s~~~d-~~v~~~d~~~~~~~~~~~~~  210 (433)
T 3bws_A          135 RLAIPLL-EDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETIS--IPEHNELWVSQMQA-NAVHVFDLKTLAYKATVDLT  210 (433)
T ss_dssp             EEEEEBT-TSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEE--EGGGTEEEEEEGGG-TEEEEEETTTCCEEEEEECS
T ss_pred             eEEEEeC-CCCeEEEEECCCCeEeeecCcccccccCCceeEEE--EcCCCEEEEEECCC-CEEEEEECCCceEEEEEcCC
Confidence            4677888 899999999999998864432  124567788888  99999999998887 9999999998776544 357


Q ss_pred             CCCeeEEEECCCCCEEE-EecCCCcEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEee--------CCCcEEEEe
Q 014475           80 AEPIKPIAANSHGTYIA-GGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGS--------EDGCVRIWS  150 (424)
Q Consensus        80 ~~~v~~~~~s~~~~~l~-~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~--------~dg~i~iwd  150 (424)
                      ...+.+++|+|+++.++ +++.++.|++||+++++.+..+..+ ..+.+++|+|+++++++++        .||.|++||
T Consensus       211 ~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d  289 (433)
T 3bws_A          211 GKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKI-GLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYS  289 (433)
T ss_dssp             SSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCC-SEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEE
T ss_pred             CCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCC-CCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEE
Confidence            88999999999999885 5557999999999999888877754 4599999999999999888        588999999


Q ss_pred             CCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeeecCcceeEEEECCCC
Q 014475          151 LLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAE  230 (424)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~i~~~~~~~~~  230 (424)
                      +.++           ..... ..|...+.+++|+|++. ..+++++.++.|++||+.+++....+.+...+.+++|+|++
T Consensus       290 ~~~~-----------~~~~~-~~~~~~~~~~~~~~~g~-~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg  356 (433)
T 3bws_A          290 MDKE-----------KLIDT-IGPPGNKRHIVSGNTEN-KIYVSDMCCSKIEVYDLKEKKVQKSIPVFDKPNTIALSPDG  356 (433)
T ss_dssp             TTTT-----------EEEEE-EEEEECEEEEEECSSTT-EEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTS
T ss_pred             CCCC-----------cEEee-ccCCCCcceEEECCCCC-EEEEEecCCCEEEEEECCCCcEEEEecCCCCCCeEEEcCCC
Confidence            9653           12222 24556788999999873 45677789999999999999999888888899999999999


Q ss_pred             CEEEEEeC---------------CCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeC-CCCcEE
Q 014475          231 HVFYAGSR---------------DGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGS-EDGMVR  293 (424)
Q Consensus       231 ~~l~~~~~---------------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~-~dg~i~  293 (424)
                      +++++++.               ||.|++||..+.         +.+..+.. ...+.+++|+| +++|++++ .|+.|+
T Consensus       357 ~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~---------~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~d~~i~  426 (433)
T 3bws_A          357 KYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTD---------TVKEFWEA-GNQPTGLDVSPDNRYLVISDFLDHQIR  426 (433)
T ss_dssp             SEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTT---------EEEEEEEC-SSSEEEEEECTTSCEEEEEETTTTEEE
T ss_pred             CEEEEEecCCCccccccccccccceEEEEEECCCC---------cEEEEecC-CCCCceEEEcCCCCEEEEEECCCCeEE
Confidence            99988876               579999999886         44555544 45789999999 88888776 599999


Q ss_pred             EEeCCC
Q 014475          294 VWDPIT  299 (424)
Q Consensus       294 iwd~~~  299 (424)
                      +|++..
T Consensus       427 v~~~~~  432 (433)
T 3bws_A          427 VYRRDG  432 (433)
T ss_dssp             EEEETT
T ss_pred             EEEecC
Confidence            999763

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=100.00  E-value=1.6e-31  Score=244.37  Aligned_cols=239  Identities=13%  Similarity=0.113  Sum_probs=174.8

Q ss_pred             eecCCCccccCCCCceeEEEEECCCCceee------eecCCCCeeEEEECC--------CCCEEEEecCCCcEEEEEccC
Q 014475           46 FLASSQLREQPSASSGSILYWSWSKPQVEV------KSLPAEPIKPIAANS--------HGTYIAGGGQSGDIYMWEVAS  111 (424)
Q Consensus        46 ~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~------~~~~~~~v~~~~~s~--------~~~~l~~~~~dg~v~iwd~~~  111 (424)
                      +.+++.++++++.| ++|++||.+.++...      ...|.+.|++++|+|        |+++||+|+.|++|+|||+++
T Consensus        97 ~~~~~~~las~~~d-~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~  175 (393)
T 4gq1_A           97 SPVYSLFLACVCQD-NTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTD  175 (393)
T ss_dssp             CCEEEEEEEEEETT-SCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEET
T ss_pred             cCCCCCEEEEEeCC-CcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCC
Confidence            56677788888887 999999998876432      235899999999998        889999999999999999999


Q ss_pred             cceeeeeccccCCeEEEEEccCCc-EEEEeeCCCcEEEEeCCcccchhcccc--------------cccceEEeecCCcC
Q 014475          112 GRLLKKWHAHYRAVTCLVFSEDGS-FLISGSEDGCVRIWSLLTVFEECESQR--------------ASHLYLHSFTGHTL  176 (424)
Q Consensus       112 ~~~~~~~~~~~~~i~~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~--------------~~~~~~~~~~~~~~  176 (424)
                      +..+..+..|..++.+++|+|++. +|++++.||.|++||++++........              ..........+|..
T Consensus       176 ~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~  255 (393)
T 4gq1_A          176 EGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIAS  255 (393)
T ss_dssp             TEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSS
T ss_pred             CceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccccc
Confidence            888888888999999999999874 799999999999999987543222110              00111223457888


Q ss_pred             ceeEEEEE-EcCceeEEEEEeCCCcEEEEecCCCceeeeee-cCcce------------------eEEEECC--CCCEEE
Q 014475          177 RITDIVIG-YGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-FPSVI------------------DAIALDP--AEHVFY  234 (424)
Q Consensus       177 ~i~~~~~~-~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~-~~~~i------------------~~~~~~~--~~~~l~  234 (424)
                      .+.++.|. +++  ..+++++.|+++++||+..++....+. +...+                  ....++|  ++.+++
T Consensus       256 ~v~~v~~~~~dg--~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  333 (393)
T 4gq1_A          256 SLANVRWIGSDG--SGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFAT  333 (393)
T ss_dssp             SCSEEEEETTTT--CEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEE
T ss_pred             cceeeeeecCCC--CEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEccCCCCEEEE
Confidence            99999997 566  899999999999999998776554443 22212                  2233443  344667


Q ss_pred             EEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeC
Q 014475          235 AGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDP  297 (424)
Q Consensus       235 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~  297 (424)
                      +|+.||.|++||+.++.         .......|..+|.+++|+| |++||+++.+| +.+|.+
T Consensus       334 sgs~Dg~V~lwd~~~~~---------~~~~~~~~~~~V~svafspdG~~LA~as~~G-v~lvrL  387 (393)
T 4gq1_A          334 AHSQHGLIQLINTYEKD---------SNSIPIQLGMPIVDFCWHQDGSHLAIATEGS-VLLTRL  387 (393)
T ss_dssp             EETTTTEEEEEETTCTT---------CCEEEEECSSCEEEEEECTTSSEEEEEESSE-EEEEEE
T ss_pred             EECCCCEEEEEECCCCc---------EEEEecCCCCcEEEEEEcCCCCEEEEEeCCC-eEEEEE
Confidence            78899999999998863         3455667889999999999 99999998776 556654

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.98  E-value=3.2e-30  Score=237.10  Aligned_cols=282  Identities=15%  Similarity=0.054  Sum_probs=219.6

Q ss_pred             CCC----ceEEEeC--CCCceE--EEeeCCCCCCCceEEecceeec--------------CCCccccCCCC--c---eeE
Q 014475           11 ADT----GIGCWDL--ESGAEQ--LRYKSCASPPHGLACVGQRFLA--------------SSQLREQPSAS--S---GSI   63 (424)
Q Consensus        11 ~dg----~i~vwd~--~~~~~~--~~~~~~~~~~~~v~~~~~~~~~--------------~~~~l~~~~~~--~---g~i   63 (424)
                      .||    +|+|||+  .+++.+  ..+.++.   ..+..++  +.+              .+..++.++.+  +   +.|
T Consensus        87 ~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~---~~~~~~~--~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i  161 (415)
T 2hqs_A           87 PDGSYNVAYQLVDTGGAPGTVLAQNSYKVNK---QWLRYAG--HTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYEL  161 (415)
T ss_dssp             TTSCEEEEEEEEECSSSTTCEEEEEEEEECG---GGHHHHH--HHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEE
T ss_pred             CCCeEEEEEEEEeCCCCCCCEEeeeEEEcCh---hHHHHHH--HHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceE
Confidence            467    8999999  999877  3465543   3444444  443              14555555443  2   799


Q ss_pred             EEEECCCCceeeeecCCCCeeEEEECCCCCEEEEecCCC---cEEEEEccCcceeeeeccccCCeEEEEEccCCcEEE-E
Q 014475           64 LYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSG---DIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLI-S  139 (424)
Q Consensus        64 ~vwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg---~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-s  139 (424)
                      ++||.+.........|...+.+++|+|+|++|++++.++   .|++||+++++.. .+..|...+.+++|+|+++.|+ +
T Consensus       162 ~i~d~~g~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~-~l~~~~~~~~~~~~spdg~~la~~  240 (415)
T 2hqs_A          162 RVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-QVASFPRHNGAPAFSPDGSKLAFA  240 (415)
T ss_dssp             EEEETTSCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-EEECCSSCEEEEEECTTSSEEEEE
T ss_pred             EEEcCCCCCCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEE-EeecCCCcccCEEEcCCCCEEEEE
Confidence            999998776666667889999999999999999998875   8999999988765 4666888999999999999887 6


Q ss_pred             eeCCCc--EEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeC-CC--cEEEEecCCCceeee
Q 014475          140 GSEDGC--VRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASE-DR--TCKVWSLLKGRLLRN  214 (424)
Q Consensus       140 ~~~dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~-d~--~v~iwd~~~~~~~~~  214 (424)
                      ++.++.  |++||+.++            ....+..|...+.+++|+|++  +.|++++. ++  .|.+||+.+++....
T Consensus       241 ~~~~g~~~i~~~d~~~~------------~~~~l~~~~~~~~~~~~spdg--~~l~~~s~~~g~~~i~~~d~~~~~~~~l  306 (415)
T 2hqs_A          241 LSKTGSLNLYVMDLASG------------QIRQVTDGRSNNTEPTWFPDS--QNLAFTSDQAGRPQVYKVNINGGAPQRI  306 (415)
T ss_dssp             ECTTSSCEEEEEETTTC------------CEEECCCCSSCEEEEEECTTS--SEEEEEECTTSSCEEEEEETTSSCCEEC
T ss_pred             EecCCCceEEEEECCCC------------CEEeCcCCCCcccceEECCCC--CEEEEEECCCCCcEEEEEECCCCCEEEE
Confidence            666655  999998652            124566788899999999998  77777775 45  677889988775443


Q ss_pred             eecCcceeEEEECCCCCEEEEEeCC---CcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCCC
Q 014475          215 IVFPSVIDAIALDPAEHVFYAGSRD---GSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDG  290 (424)
Q Consensus       215 ~~~~~~i~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg  290 (424)
                      ..+...+..++|+|+|++|++++.+   ..|++||+.++.          ...+..|. .+.+++|+| +++|++++.++
T Consensus       307 ~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~----------~~~l~~~~-~~~~~~~spdg~~l~~~s~~~  375 (415)
T 2hqs_A          307 TWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGG----------VQVLSSTF-LDETPSLAPNGTMVIYSSSQG  375 (415)
T ss_dssp             CCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCC----------EEECCCSS-SCEEEEECTTSSEEEEEEEET
T ss_pred             ecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCC----------EEEecCCC-CcCCeEEcCCCCEEEEEEcCC
Confidence            3466788999999999999988764   589999998863          23344454 899999999 99898888776


Q ss_pred             ---cEEEEeCCCCcEEEEEeccCCCeeEEEEEecCce
Q 014475          291 ---MVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLY  324 (424)
Q Consensus       291 ---~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~  324 (424)
                         .|++||+. ++....+..|.+.|.+++|+|...+
T Consensus       376 ~~~~l~~~d~~-g~~~~~l~~~~~~v~~~~~~~~~~~  411 (415)
T 2hqs_A          376 MGSVLNLVSTD-GRFKARLPATDGQVKFPAWSPYLHH  411 (415)
T ss_dssp             TEEEEEEEETT-SCCEEECCCSSSEEEEEEECCCCCC
T ss_pred             CccEEEEEECC-CCcEEEeeCCCCCCcCCcccccccc
Confidence               79999987 6667888899999999999997543

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.97  E-value=7e-28  Score=228.09  Aligned_cols=276  Identities=11%  Similarity=0.057  Sum_probs=221.0

Q ss_pred             eecCCCccccCCCCceeEEEEECCCCceeeeecCCCCeeEEEECCCCCEEEEecCCCcEEEEEc--cCcceeeeeccccC
Q 014475           46 FLASSQLREQPSASSGSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEV--ASGRLLKKWHAHYR  123 (424)
Q Consensus        46 ~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~--~~~~~~~~~~~~~~  123 (424)
                      ++|++..+++...+ ++|.+||..+++..........+..++|+|||++|++++.|+.|.+||+  .+++.+..+. +..
T Consensus       145 ~~p~~~~~vs~~~d-~~V~v~D~~t~~~~~~i~~g~~~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~-~g~  222 (543)
T 1nir_A          145 LDLPNLFSVTLRDA-GQIALVDGDSKKIVKVIDTGYAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIK-IGI  222 (543)
T ss_dssp             CCGGGEEEEEEGGG-TEEEEEETTTCCEEEEEECSTTEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEE-CCS
T ss_pred             cCCCCEEEEEEcCC-CeEEEEECCCceEEEEEecCcccceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEe-cCC
Confidence            78898888777776 9999999998887655443344899999999999999999999999999  8888888887 455


Q ss_pred             CeEEEEEcc----CCcEEEEeeC-CCcEEEEeCCcccchhcccccccceEEeecC----------C-cCceeEEEEEEcC
Q 014475          124 AVTCLVFSE----DGSFLISGSE-DGCVRIWSLLTVFEECESQRASHLYLHSFTG----------H-TLRITDIVIGYGG  187 (424)
Q Consensus       124 ~i~~~~~~~----~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~----------~-~~~i~~~~~~~~~  187 (424)
                      .+..++|+|    +++++++++. +++|.+||..++.           .+..+..          | ...+..+.+++++
T Consensus       223 ~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~-----------~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~  291 (543)
T 1nir_A          223 EARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLE-----------PKQIVSTRGMTVDTQTYHPEPRVAAIIASHEH  291 (543)
T ss_dssp             EEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCC-----------EEEEEECCEECSSSCCEESCCCEEEEEECSSS
T ss_pred             CcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccc-----------cceeecccCcccCccccccCCceEEEEECCCC
Confidence            689999999    9999998884 8999999986632           2233322          2 2368889999876


Q ss_pred             ceeEEEEEeCCCcEEEEecCCCceee--eeecCcceeEEEECCCCCEEEEEe-CCCcEEEEEcCCCCCCCCCcCceeeee
Q 014475          188 VSATIVSASEDRTCKVWSLLKGRLLR--NIVFPSVIDAIALDPAEHVFYAGS-RDGSIYIAALNAESPSTSSYGMHIIGS  264 (424)
Q Consensus       188 ~~~~l~~~~~d~~v~iwd~~~~~~~~--~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~  264 (424)
                      . .++++...++.|.+||+.+.+.+.  .+.+...+..+.|+|+++++++++ .+++|.+||..++         +++..
T Consensus       292 ~-~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg---------~l~~~  361 (543)
T 1nir_A          292 P-EFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDR---------RLSAL  361 (543)
T ss_dssp             S-EEEEEETTTTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTT---------EEEEE
T ss_pred             C-EEEEEECCCCeEEEEEecCCCcceeEEeccCcCccCceECCCCCEEEEEecCCCeEEEEECCCC---------eEEEe
Confidence            4 677888899999999998876554  555667788999999999877665 5889999999987         44444


Q ss_pred             ecc----cCcCeEEEEecC--CCEEEEeC-CCCcEEEEeCCC-------CcEEEEEeccCCCeeEEEEEecCceeeecc-
Q 014475          265 LSD----HSKAVTCLAYST--GDLLISGS-EDGMVRVWDPIT-------HNIVRMFRLAKGPVNNILVVRRPLYLNLGS-  329 (424)
Q Consensus       265 ~~~----~~~~i~~~~~~~--~~~l~t~~-~dg~i~iwd~~~-------~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~-  329 (424)
                      +..    |......+ ++|  +..++++. .|++|.+||+.+       +++++++..|.+.+..+.++|++++|.+++ 
T Consensus       362 i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~  440 (543)
T 1nir_A          362 VDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTT  440 (543)
T ss_dssp             EECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCT
T ss_pred             eccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecC
Confidence            442    55444443 355  56677775 689999999998       899999999998999999999999999987 


Q ss_pred             ------CCCceeeccCCCCCCC
Q 014475          330 ------FSNPHTSSRRHGSQLP  345 (424)
Q Consensus       330 ------~d~~i~iw~~~~~~~~  345 (424)
                            .+++|.+||+.+.+..
T Consensus       441 ~~~~~~~~~~v~v~d~~~~~~~  462 (543)
T 1nir_A          441 FNPDARISQSVAVFDLKNLDAK  462 (543)
T ss_dssp             TCSSHHHHTCEEEEETTCTTSC
T ss_pred             CCCCcccCceEEEEECCCCCCC
Confidence                  3789999999988754

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.96  E-value=1.9e-27  Score=205.15  Aligned_cols=234  Identities=14%  Similarity=0.057  Sum_probs=171.0

Q ss_pred             ceEEEeCCCCceEEEeeCC-----------CCCCCceEEecceeecC----CCccccCCCCceeEEEEECCCCceeeeec
Q 014475           14 GIGCWDLESGAEQLRYKSC-----------ASPPHGLACVGQRFLAS----SQLREQPSASSGSILYWSWSKPQVEVKSL   78 (424)
Q Consensus        14 ~i~vwd~~~~~~~~~~~~~-----------~~~~~~v~~~~~~~~~~----~~~l~~~~~~~g~i~vwd~~~~~~~~~~~   78 (424)
                      .++-|.......+......           .-+...|.+++  ++|+    ++.+++++   ..+.+|++          
T Consensus        78 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla--~spd~~~~~~~l~s~g---~~~~v~~l----------  142 (356)
T 2w18_A           78 KLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALF--CSSDDESEKQVLLKSG---NIKAVLGL----------  142 (356)
T ss_dssp             EEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEEC--C------CCEEEEEEE---EEEEEEEE----------
T ss_pred             eeEEEeccCceeEEEEEcCcccceeeeeeccccccceEEEE--ECCCccccccEEEeCC---CeEEEEec----------
Confidence            5677776654444332221           12345678888  9999    88888866   34777753          


Q ss_pred             CCCCeeEEEECCCCCEEEEec--CCCcEEEEEc-cCcceeeeeccccCCeEEEEEcc---CCcEEEEeeCCCcEEEEeCC
Q 014475           79 PAEPIKPIAANSHGTYIAGGG--QSGDIYMWEV-ASGRLLKKWHAHYRAVTCLVFSE---DGSFLISGSEDGCVRIWSLL  152 (424)
Q Consensus        79 ~~~~v~~~~~s~~~~~l~~~~--~dg~v~iwd~-~~~~~~~~~~~~~~~i~~~~~~~---~~~~l~s~~~dg~i~iwd~~  152 (424)
                                 ++++.+.+++  .|+.|++|++ .+++.+..+..|...++.++|+|   ++..|++++.|++|+|||+.
T Consensus       143 -----------~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~  211 (356)
T 2w18_A          143 -----------TKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLK  211 (356)
T ss_dssp             -----------TTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETT
T ss_pred             -----------CCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECC
Confidence                       4566666643  5889999999 45788888889999999999999   77999999999999999996


Q ss_pred             cccchhcccccccceEEeecCCc---CceeEEEEEEcCceeEE------------EEEeCCCcEEEEecCCCceeeeee-
Q 014475          153 TVFEECESQRASHLYLHSFTGHT---LRITDIVIGYGGVSATI------------VSASEDRTCKVWSLLKGRLLRNIV-  216 (424)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~---~~i~~~~~~~~~~~~~l------------~~~~~d~~v~iwd~~~~~~~~~~~-  216 (424)
                      +           ...++++.+|.   ..+.+++|+|++  .++            ++|+.|++|++||..+++.+..+. 
T Consensus       212 T-----------Gk~l~tL~g~~~~v~~v~~vafSpdG--~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~  278 (356)
T 2w18_A          212 T-----------GQLLKKMHIDDSYQASVCHKAYSEMG--LLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLY  278 (356)
T ss_dssp             T-----------CCEEEEEECCC---CCCEEEEEEETT--EEEEEEC------------CCEEEEEEETTTTEEEEEEEE
T ss_pred             C-----------CcEEEEEcCCCcceeeeEEEEECCCC--CEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEe
Confidence            5           34566666543   467777899988  665            668899999999999998876552 


Q ss_pred             -----cCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeE-EEEecC-CCEEEEeCCC
Q 014475          217 -----FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVT-CLAYST-GDLLISGSED  289 (424)
Q Consensus       217 -----~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~~~-~~~l~t~~~d  289 (424)
                           +...+.  ..+.++.++++++.|++|++||+.++         +.+.++.+|...+. .++|+| +++|++|+.|
T Consensus       279 ~~p~Gh~~~~l--sg~~sg~~lASgS~DgTIkIWDl~tG---------k~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D  347 (356)
T 2w18_A          279 CLPPGQAGRFL--EGDVKDHCAAAILTSGTIAIWDLLLG---------QCTALLPPVSDQHWSFVKWSGTDSHLLAGQKD  347 (356)
T ss_dssp             CCCTTCCCCEE--EEEEETTEEEEEETTSCEEEEETTTC---------SEEEEECCC--CCCCEEEECSSSSEEEEECTT
T ss_pred             eccCCCcceeE--ccccCCCEEEEEcCCCcEEEEECCCC---------cEEEEecCCCCCeEEEEEECCCCCEEEEEECC
Confidence                 222232  23334778999999999999999997         67788888887655 589999 9999999999


Q ss_pred             CcEEEEeC
Q 014475          290 GMVRVWDP  297 (424)
Q Consensus       290 g~i~iwd~  297 (424)
                      ++|+|||+
T Consensus       348 ~TIklWd~  355 (356)
T 2w18_A          348 GNIFVYHY  355 (356)
T ss_dssp             SCEEEEEE
T ss_pred             CcEEEecC
Confidence            99999995

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.96  E-value=8.8e-28  Score=238.00  Aligned_cols=311  Identities=11%  Similarity=0.083  Sum_probs=232.3

Q ss_pred             EEeecCCC-CC-----ceEEEeCCCCceEEEeeCCCCCC---------------------CceEEecceeecCCCccccC
Q 014475            4 LIASSSVA-DT-----GIGCWDLESGAEQLRYKSCASPP---------------------HGLACVGQRFLASSQLREQP   56 (424)
Q Consensus         4 ~lat~~~~-dg-----~i~vwd~~~~~~~~~~~~~~~~~---------------------~~v~~~~~~~~~~~~~l~~~   56 (424)
                      +||+++ . ||     .|++||+.+++....+..+....                     ..+..++  |+|||++|+++
T Consensus        50 ~la~~~-~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--~SpDg~~l~~~  126 (741)
T 2ecf_A           50 RVTFLR-GKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQ--WSPDAQRLLFP  126 (741)
T ss_dssp             EEEEEE-CCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCE--ECTTSSEEEEE
T ss_pred             EEEEEe-ccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeE--ECCCCCEEEEE
Confidence            567777 5 88     89999999998877665432210                     2356667  99999999988


Q ss_pred             CCCceeEEEEECCCC---ceeeeecCCCCeeEEEECCCCCEEEEecCCCcEEEEEccCcceeeeeccccCC---------
Q 014475           57 SASSGSILYWSWSKP---QVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRA---------  124 (424)
Q Consensus        57 ~~~~g~i~vwd~~~~---~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~---------  124 (424)
                      +.  +.|.+||+.++   +......+...+..++|||||++|+.++ ++.|++||+.+++.......+...         
T Consensus       127 ~~--~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~~~~~~~~~~~~~~~g~~~~v  203 (741)
T 2ecf_A          127 LG--GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGRQMQLTADGSTTIGNGIAEFV  203 (741)
T ss_dssp             ET--TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTEEEECCCCCCSSEEESCCCHH
T ss_pred             eC--CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCCEEEeccCCccceecccccee
Confidence            86  89999999987   6555556778899999999999999987 468999999988766554444332         


Q ss_pred             -------eEEEEEccCCcEEEEeeCCC---------------------------------cEEEEeCCc-ccchhccccc
Q 014475          125 -------VTCLVFSEDGSFLISGSEDG---------------------------------CVRIWSLLT-VFEECESQRA  163 (424)
Q Consensus       125 -------i~~~~~~~~~~~l~s~~~dg---------------------------------~i~iwd~~~-~~~~~~~~~~  163 (424)
                             +..+.|+|||++|++++.|+                                 .|.+||+.+ +..       
T Consensus       204 ~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~-------  276 (741)
T 2ecf_A          204 ADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQAQT-------  276 (741)
T ss_dssp             HHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTTCCC-------
T ss_pred             eeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCCCce-------
Confidence                   47899999999999988765                                 788888854 321       


Q ss_pred             ccceEEeecCCcCceeEEEEEEcCceeEEEEEeC-----CCcEEEEecCCCceeeeeecCc-----ceeEEEECCCCCEE
Q 014475          164 SHLYLHSFTGHTLRITDIVIGYGGVSATIVSASE-----DRTCKVWSLLKGRLLRNIVFPS-----VIDAIALDPAEHVF  233 (424)
Q Consensus       164 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~-----d~~v~iwd~~~~~~~~~~~~~~-----~i~~~~~~~~~~~l  233 (424)
                        ..+.....|...+..++| |++  +.|++++.     +..|.+||+.+++....+....     .+..++|+|+|+++
T Consensus       277 --~~~~~~~~~~~~~~~~~~-pDg--~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~spdg~~~  351 (741)
T 2ecf_A          277 --QWIDLGKEQDIYLARVNW-RDP--QHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFLDDGSIL  351 (741)
T ss_dssp             --EEECCCSCSSEEEEEEEE-EET--TEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEECTTSCEE
T ss_pred             --EEecCCCCcceEEEEEEe-CCC--CEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEECCCCeEE
Confidence              011111247788999999 999  67776553     5679999999998776665322     45689999999999


Q ss_pred             EEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEE-EecC-CCEEE-EeCCCC--cEEEEeCCC-CcEEEEEe
Q 014475          234 YAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCL-AYST-GDLLI-SGSEDG--MVRVWDPIT-HNIVRMFR  307 (424)
Q Consensus       234 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~~~-~~~l~-t~~~dg--~i~iwd~~~-~~~~~~~~  307 (424)
                      ++++.+|.+++|.++...        . ...+..|...+..+ .|+| ++.|+ +++.++  .++||++.. +.....+.
T Consensus       352 ~~~~~~g~~~l~~~~~~~--------~-~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~g~~~~~l~  422 (741)
T 2ecf_A          352 WSSERTGFQHLYRIDSKG--------K-AAALTHGNWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPLQGGQPQRLS  422 (741)
T ss_dssp             EEECTTSSCEEEEECSSS--------C-EEESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEETTCCCCEECC
T ss_pred             EEecCCCccEEEEEcCCC--------C-eeeeeecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEcCCCCeeecc
Confidence            999999988888887432        3 45666777888887 5999 77664 555565  899999864 55566666


Q ss_pred             ccCCCeeEEEEEecCceeeeccCC----CceeeccCCCC
Q 014475          308 LAKGPVNNILVVRRPLYLNLGSFS----NPHTSSRRHGS  342 (424)
Q Consensus       308 ~~~~~v~~l~~s~~~~~l~~~~~d----~~i~iw~~~~~  342 (424)
                      . ...+..++|+|||++|+....+    ..+.+|+..+.
T Consensus       423 ~-~~~~~~~~~spdg~~l~~~~~~~~~p~~~~l~~~~~~  460 (741)
T 2ecf_A          423 K-APGMHSASFARNASVYVDSWSNNSTPPQIELFRANGE  460 (741)
T ss_dssp             C-SCSEEEEEECTTSSEEEEEEEETTEEEEEEEEETTSC
T ss_pred             c-CCCceEEEECCCCCEEEEEecCCCCCCeEEEEEcCCC
Confidence            5 6678899999999998765433    45777876543

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.96  E-value=5.9e-28  Score=237.89  Aligned_cols=309  Identities=13%  Similarity=0.086  Sum_probs=221.1

Q ss_pred             EeecCCCCCceEEEeCCCCceE-EEeeCCCC--------------CCCceEEecceeecCCCccccCCCCceeEEEEECC
Q 014475            5 IASSSVADTGIGCWDLESGAEQ-LRYKSCAS--------------PPHGLACVGQRFLASSQLREQPSASSGSILYWSWS   69 (424)
Q Consensus         5 lat~~~~dg~i~vwd~~~~~~~-~~~~~~~~--------------~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~   69 (424)
                      +++++ .|| | +||+.+|+.+ ..+..+..              +...+.+++  |+|+ +.++.+. + +.|.+||+.
T Consensus        38 ~~~~~-~~~-i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~--~spd-~~~~~~~-~-~~i~~~d~~  109 (706)
T 2z3z_A           38 YVFIE-GDD-L-VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTL--DAGR-GLVVLFT-Q-GGLVGFDML  109 (706)
T ss_dssp             EEEEE-TTE-E-EEEC-------CEEEEHHHHHTTC-----------CCCEEEE--ETTT-TEEEEEE-T-TEEEEEETT
T ss_pred             EEEEe-CCc-E-EEECCCCcEeeEEeechhHhhhhccchhccccccccCceeEE--ECCC-CeEEEEE-C-CEEEEEECC
Confidence            34455 567 8 9999999873 33332211              114578888  9999 6655553 3 899999999


Q ss_pred             CCceeeeecCCCCeeEEEECCCCCEEEEecCCCcEEEEEccC-----cceeeeeccccCC--------------eEEEEE
Q 014475           70 KPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVAS-----GRLLKKWHAHYRA--------------VTCLVF  130 (424)
Q Consensus        70 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~-----~~~~~~~~~~~~~--------------i~~~~~  130 (424)
                      +++......+...+.+++|||||++|+++ .++.|++||+.+     ++.......+...              +.++.|
T Consensus       110 ~~~~~~l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~  188 (706)
T 2z3z_A          110 ARKVTYLFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFW  188 (706)
T ss_dssp             TTEEEEEECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEE
T ss_pred             CCceEEccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEE
Confidence            88776666677889999999999999985 679999999998     7766544444333              488999


Q ss_pred             ccCCcEEEEee---------------------------------CCCcEEEEeCCcccchhcccccccceEEeecCCcCc
Q 014475          131 SEDGSFLISGS---------------------------------EDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLR  177 (424)
Q Consensus       131 ~~~~~~l~s~~---------------------------------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (424)
                      +|||++|++++                                 .+..|++||+.++..         ..+.....|...
T Consensus       189 SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~---------~~~~~~~~~~~~  259 (706)
T 2z3z_A          189 SPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKT---------VYLQTGEPKEKF  259 (706)
T ss_dssp             CTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEE---------EECCCCSCTTCE
T ss_pred             CCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCce---------EeeccCCCCcee
Confidence            99999999987                                 446799999966321         111112256778


Q ss_pred             eeEEEEEEcCceeEEEEEeCCC-----cEEEEecCCCceeeeee---cCc---ceeEEEECC--CCCEEEEEeCCCcEEE
Q 014475          178 ITDIVIGYGGVSATIVSASEDR-----TCKVWSLLKGRLLRNIV---FPS---VIDAIALDP--AEHVFYAGSRDGSIYI  244 (424)
Q Consensus       178 i~~~~~~~~~~~~~l~~~~~d~-----~v~iwd~~~~~~~~~~~---~~~---~i~~~~~~~--~~~~l~~~~~dg~i~i  244 (424)
                      +.+++|+|++  +.|++++.++     .|.+||+.+++....+.   ...   .+..++|+|  ++++++++..++.+++
T Consensus       260 ~~~~~~spdg--~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l  337 (706)
T 2z3z_A          260 LTNLSWSPDE--NILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHL  337 (706)
T ss_dssp             EEEEEECTTS--SEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEE
T ss_pred             EeeEEEECCC--CEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCccEE
Confidence            9999999998  7888877665     89999999984333332   222   246789999  9999999999999999


Q ss_pred             EEcCCCCCCCCCcCceeeeeecccCcCeEE-EEecC-CCEEEE-eCCCC----cEEEEeCCCCcEEEEEeccCCCeeEEE
Q 014475          245 AALNAESPSTSSYGMHIIGSLSDHSKAVTC-LAYST-GDLLIS-GSEDG----MVRVWDPITHNIVRMFRLAKGPVNNIL  317 (424)
Q Consensus       245 ~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~-~~~l~t-~~~dg----~i~iwd~~~~~~~~~~~~~~~~v~~l~  317 (424)
                      |.++...        .....+..|...+.. ++|+| ++.|+. ++.++    .|..||+.+++ ...+. |...+.+++
T Consensus       338 ~~~~~~~--------~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~-~~~l~-~~~~~~~~~  407 (706)
T 2z3z_A          338 YLYDTTG--------RLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGK-TKDLT-PESGMHRTQ  407 (706)
T ss_dssp             EEEETTS--------CEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCC-CEESC-CSSSEEEEE
T ss_pred             EEEECCC--------CEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCC-ceecc-CCCceEEEE
Confidence            9887322        345566677777877 79999 776654 44554    67778877765 44444 667899999


Q ss_pred             EEecCceeeeccCC----CceeeccCCCCC
Q 014475          318 VVRRPLYLNLGSFS----NPHTSSRRHGSQ  343 (424)
Q Consensus       318 ~s~~~~~l~~~~~d----~~i~iw~~~~~~  343 (424)
                      |+|||++|+....+    +.+.+|++.+++
T Consensus       408 ~spdg~~l~~~~~~~~~p~~i~l~d~~~~~  437 (706)
T 2z3z_A          408 LSPDGSAIIDIFQSPTVPRKVTVTNIGKGS  437 (706)
T ss_dssp             ECTTSSEEEEEEECSSCSCEEEEEESSSCE
T ss_pred             ECCCCCEEEEEecCCCCCcEEEEEECCCCe
Confidence            99999998876443    459999988764

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.96  E-value=6.1e-28  Score=221.86  Aligned_cols=277  Identities=12%  Similarity=0.021  Sum_probs=211.0

Q ss_pred             ceEEecceeecCCCccc-cCC---CCce----eEEEEEC--CCCceee---eecCCCCeeEEEECC--------------
Q 014475           38 GLACVGQRFLASSQLRE-QPS---ASSG----SILYWSW--SKPQVEV---KSLPAEPIKPIAANS--------------   90 (424)
Q Consensus        38 ~v~~~~~~~~~~~~~l~-~~~---~~~g----~i~vwd~--~~~~~~~---~~~~~~~v~~~~~s~--------------   90 (424)
                      .+...+  |.+.|..++ +++   ..+|    .|++||+  .+++...   ...|...+..+++++              
T Consensus        64 ~~~~~~--w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~  141 (415)
T 2hqs_A           64 EVQPAA--WSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGA  141 (415)
T ss_dssp             GCCHHH--HHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCC
T ss_pred             CcCHHH--HHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCc
Confidence            455555  777776555 443   1236    8999999  7776542   244666677776664              


Q ss_pred             CCCEEEEecCC------CcEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEeeCCC---cEEEEeCCcccchhccc
Q 014475           91 HGTYIAGGGQS------GDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDG---CVRIWSLLTVFEECESQ  161 (424)
Q Consensus        91 ~~~~l~~~~~d------g~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg---~i~iwd~~~~~~~~~~~  161 (424)
                      .+..++.++.+      +.|++||+. +.....+..|...+.+++|+|++++|++++.++   .|++||+.++.      
T Consensus       142 ~~~~l~~~s~~~~~~~~~~i~i~d~~-g~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~------  214 (415)
T 2hqs_A          142 FRTRIAYVVQTNGGQFPYELRVSDYD-GYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGA------  214 (415)
T ss_dssp             TTCEEEEEEECSSSSCCEEEEEEETT-SCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCC------
T ss_pred             CCCEEEEEEecCCCCccceEEEEcCC-CCCCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCc------
Confidence            25566665554      789999997 455677788999999999999999999999875   99999996631      


Q ss_pred             ccccceEEeecCCcCceeEEEEEEcCceeEEE-EEeCCCc--EEEEecCCCceeeeeecCcceeEEEECCCCCEEEEEeC
Q 014475          162 RASHLYLHSFTGHTLRITDIVIGYGGVSATIV-SASEDRT--CKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSR  238 (424)
Q Consensus       162 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~-~~~~d~~--v~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~  238 (424)
                            ...+..|...+.+++|+|++  +.|+ +++.++.  |.+||+.+++......+...+.+++|+|+++.|++++.
T Consensus       215 ------~~~l~~~~~~~~~~~~spdg--~~la~~~~~~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~~spdg~~l~~~s~  286 (415)
T 2hqs_A          215 ------VRQVASFPRHNGAPAFSPDG--SKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSD  286 (415)
T ss_dssp             ------EEEEECCSSCEEEEEECTTS--SEEEEEECTTSSCEEEEEETTTCCEEECCCCSSCEEEEEECTTSSEEEEEEC
T ss_pred             ------EEEeecCCCcccCEEEcCCC--CEEEEEEecCCCceEEEEECCCCCEEeCcCCCCcccceEECCCCCEEEEEEC
Confidence                  12455677889999999998  6666 6666655  99999998887554457788999999999999988876


Q ss_pred             -CC--cEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCC---CcEEEEeCCCCcEEEEEeccCC
Q 014475          239 -DG--SIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSED---GMVRVWDPITHNIVRMFRLAKG  311 (424)
Q Consensus       239 -dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~d---g~i~iwd~~~~~~~~~~~~~~~  311 (424)
                       ++  .|++||+.++.          ...+..|...+.+++|+| +++|++++.+   ..|++||+.+++.. .+..+. 
T Consensus       287 ~~g~~~i~~~d~~~~~----------~~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~-~l~~~~-  354 (415)
T 2hqs_A          287 QAGRPQVYKVNINGGA----------PQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLSSTF-  354 (415)
T ss_dssp             TTSSCEEEEEETTSSC----------CEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEE-ECCCSS-
T ss_pred             CCCCcEEEEEECCCCC----------EEEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEE-EecCCC-
Confidence             44  67777887753          233445667889999999 8988888754   58999999988764 455554 


Q ss_pred             CeeEEEEEecCceeeeccCCC---ceeeccCCCCC
Q 014475          312 PVNNILVVRRPLYLNLGSFSN---PHTSSRRHGSQ  343 (424)
Q Consensus       312 ~v~~l~~s~~~~~l~~~~~d~---~i~iw~~~~~~  343 (424)
                      .+.+++|+|+|++|++++.++   .|++|++.+..
T Consensus       355 ~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g~~  389 (415)
T 2hqs_A          355 LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRF  389 (415)
T ss_dssp             SCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCC
T ss_pred             CcCCeEEcCCCCEEEEEEcCCCccEEEEEECCCCc
Confidence            899999999999999988877   79999987553

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.95  E-value=8.4e-27  Score=204.38  Aligned_cols=251  Identities=17%  Similarity=0.082  Sum_probs=194.8

Q ss_pred             ceeEEEEECCCCceeeeecCCCCeeEEEECCCCCEEEEecCCCcEEEEEccC-cceeeeeccc-cCCeEEEEEccCCcEE
Q 014475           60 SGSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVAS-GRLLKKWHAH-YRAVTCLVFSEDGSFL  137 (424)
Q Consensus        60 ~g~i~vwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~-~~~~~~~~~~-~~~i~~~~~~~~~~~l  137 (424)
                      ++.|++||+.+++......|...|.+++|+|++++|++++ ++.|++||+.+ ++.......+ ...+.+++|+|++++|
T Consensus        21 ~~~i~~~d~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l   99 (297)
T 2ojh_A           21 RSSIEIFNIRTRKMRVVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPDGALY   99 (297)
T ss_dssp             CEEEEEEETTTTEEEEEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTTSSEE
T ss_pred             ceeEEEEeCCCCceeeeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEECCCCCEE
Confidence            4999999999988777777889999999999999999976 78999999998 8777666555 3678899999999999


Q ss_pred             EEee--CCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEE-EEeCCCcEEEEecC--CCcee
Q 014475          138 ISGS--EDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIV-SASEDRTCKVWSLL--KGRLL  212 (424)
Q Consensus       138 ~s~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~-~~~~d~~v~iwd~~--~~~~~  212 (424)
                      ++++  .++...+|.++..         .. ....+..+ ..+..++|+|++  +.++ +++.++.+++|+++  +++..
T Consensus       100 ~~~~~~~~~~~~l~~~~~~---------~~-~~~~~~~~-~~~~~~~~spdg--~~l~~~~~~~~~~~l~~~~~~~~~~~  166 (297)
T 2ojh_A          100 AISDKVEFGKSAIYLLPST---------GG-TPRLMTKN-LPSYWHGWSPDG--KSFTYCGIRDQVFDIYSMDIDSGVET  166 (297)
T ss_dssp             EEEECTTTSSCEEEEEETT---------CC-CCEECCSS-SSEEEEEECTTS--SEEEEEEEETTEEEEEEEETTTCCEE
T ss_pred             EEEEeCCCCcceEEEEECC---------CC-ceEEeecC-CCccceEECCCC--CEEEEEECCCCceEEEEEECCCCcce
Confidence            9998  3455666655321         11 12223333 348889999998  5555 78889999999864  44444


Q ss_pred             eeeecCcceeEEEECCCCCEEEEEe-CCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCC-
Q 014475          213 RNIVFPSVIDAIALDPAEHVFYAGS-RDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSED-  289 (424)
Q Consensus       213 ~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~d-  289 (424)
                      ....+...+.+++|+|+++.+++++ .++.+.+|+++...        .....+..|...+..++|+| +++|++++.+ 
T Consensus       167 ~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~--------~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~  238 (297)
T 2ojh_A          167 RLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDG--------SSVERITDSAYGDWFPHPSPSGDKVVFVSYDA  238 (297)
T ss_dssp             ECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTS--------SCEEECCCCSEEEEEEEECTTSSEEEEEEEET
T ss_pred             EcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCC--------CCcEEEecCCcccCCeEECCCCCEEEEEEcCC
Confidence            4444778899999999999888766 58899999987432        33456667788899999999 8888888765 


Q ss_pred             ----------CcEEEEeCCCCcE--EEEEeccCCCeeEEEEEecCceeeeccCCC
Q 014475          290 ----------GMVRVWDPITHNI--VRMFRLAKGPVNNILVVRRPLYLNLGSFSN  332 (424)
Q Consensus       290 ----------g~i~iwd~~~~~~--~~~~~~~~~~v~~l~~s~~~~~l~~~~~d~  332 (424)
                                +.|.+||+.+++.  +..+..|...+..++|+|++++|++++.+.
T Consensus       239 ~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~  293 (297)
T 2ojh_A          239 DVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYFP  293 (297)
T ss_dssp             TCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred             CCCcccccCceEEEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEecc
Confidence                      5699999998865  444557888999999999999998887654

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.95  E-value=1.4e-25  Score=200.23  Aligned_cols=281  Identities=8%  Similarity=-0.014  Sum_probs=202.1

Q ss_pred             EEEeecCCCCCceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCce-eee-ecCC
Q 014475            3 LLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQV-EVK-SLPA   80 (424)
Q Consensus         3 ~~lat~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~-~~~-~~~~   80 (424)
                      .++++.+ .++.|.+||.++++....+..+   .... .++  |+|+++.+++++..++.|.+||..+++. ... ..+.
T Consensus        11 ~~~v~~~-~~~~v~~~d~~~~~~~~~~~~~---~~~~-~~~--~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~   83 (331)
T 3u4y_A           11 FGIVVEQ-HLRRISFFSTDTLEILNQITLG---YDFV-DTA--ITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQ   83 (331)
T ss_dssp             EEEEEEG-GGTEEEEEETTTCCEEEEEECC---CCEE-EEE--ECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEECS
T ss_pred             EEEEEec-CCCeEEEEeCcccceeeeEEcc---CCcc-eEE--EcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccCC
Confidence            4567777 8999999999999998887643   2334 777  9999998777776559999999998875 333 3344


Q ss_pred             CCeeEEEECCCCCEEEEecCCC---cEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEe-eCCCc-EEEEeCCccc
Q 014475           81 EPIKPIAANSHGTYIAGGGQSG---DIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISG-SEDGC-VRIWSLLTVF  155 (424)
Q Consensus        81 ~~v~~~~~s~~~~~l~~~~~dg---~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~~dg~-i~iwd~~~~~  155 (424)
                      .+..+++|+|++++++++..++   .|.+||+.+++.+..+..+ ..+.+++|+|++++++++ ..++. |.+|++....
T Consensus        84 ~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g  162 (331)
T 3u4y_A           84 SSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIP-YDAVGIAISPNGNGLILIDRSSANTVRRFKIDADG  162 (331)
T ss_dssp             SCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECC-TTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTC
T ss_pred             CCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECC-CCccceEECCCCCEEEEEecCCCceEEEEEECCCC
Confidence            5555599999999999665553   8999999999888777643 457999999999865554 55588 9999986421


Q ss_pred             chhcccccccceEEeecCCcCceeEEEEEEcCceeEE-EEEeCCCcEEEEecCCCce---eeeeecCcceeEEEECCCCC
Q 014475          156 EECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATI-VSASEDRTCKVWSLLKGRL---LRNIVFPSVIDAIALDPAEH  231 (424)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l-~~~~~d~~v~iwd~~~~~~---~~~~~~~~~i~~~~~~~~~~  231 (424)
                      ....     .. ...+ ........++|+|++  +++ +++..++.|.+||+.+++.   +..+.....+..++|+|+++
T Consensus       163 ~~~~-----~~-~~~~-~~~~~~~~~~~spdg--~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~  233 (331)
T 3u4y_A          163 VLFD-----TG-QEFI-SGGTRPFNITFTPDG--NFAFVANLIGNSIGILETQNPENITLLNAVGTNNLPGTIVVSRDGS  233 (331)
T ss_dssp             CEEE-----EE-EEEE-CSSSSEEEEEECTTS--SEEEEEETTTTEEEEEECSSTTSCEEEEEEECSSCCCCEEECTTSS
T ss_pred             cEee-----cC-Cccc-cCCCCccceEECCCC--CEEEEEeCCCCeEEEEECCCCcccceeeeccCCCCCceEEECCCCC
Confidence            1000     00 1112 334557899999998  544 5555789999999999988   77777778889999999999


Q ss_pred             EEEEEe-CCCcEEEEEcCCCCCCCCCcCceeeeeeccc----C---cCeEEEEecC-CCEEE-EeCCCCcEEEEeCCCCc
Q 014475          232 VFYAGS-RDGSIYIAALNAESPSTSSYGMHIIGSLSDH----S---KAVTCLAYST-GDLLI-SGSEDGMVRVWDPITHN  301 (424)
Q Consensus       232 ~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~----~---~~i~~~~~~~-~~~l~-t~~~dg~i~iwd~~~~~  301 (424)
                      +++++. .++.|.+||..++..       ..+..+..+    .   .....++|+| +++|+ ++..++.|.+||+....
T Consensus       234 ~l~v~~~~~~~i~~~d~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~  306 (331)
T 3u4y_A          234 TVYVLTESTVDVFNFNQLSGTL-------SFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTISGKV  306 (331)
T ss_dssp             EEEEECSSEEEEEEEETTTTEE-------EEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSCE
T ss_pred             EEEEEEcCCCEEEEEECCCCce-------eeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEecCCc
Confidence            877665 477899999987642       112222111    2   2235689999 77765 45567799999998643


Q ss_pred             EEEEEec
Q 014475          302 IVRMFRL  308 (424)
Q Consensus       302 ~~~~~~~  308 (424)
                       +..+..
T Consensus       307 -~~~~~~  312 (331)
T 3u4y_A          307 -VGYVAG  312 (331)
T ss_dssp             -EEECTT
T ss_pred             -ccceec
Confidence             333433

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.95  E-value=1.8e-25  Score=200.38  Aligned_cols=297  Identities=11%  Similarity=0.124  Sum_probs=200.9

Q ss_pred             EEEeecCCCCCceEEEeCC-CCc--eEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECC--CCceee--
Q 014475            3 LLIASSSVADTGIGCWDLE-SGA--EQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWS--KPQVEV--   75 (424)
Q Consensus         3 ~~lat~~~~dg~i~vwd~~-~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~--~~~~~~--   75 (424)
                      .++++++ .|+.|++||+. +++  .+..+.    +...+.+++  |+|+++++++++.+++.|.+|+++  +++...  
T Consensus         6 ~l~~~~~-~~~~v~~~~~~~~~~~~~~~~~~----~~~~~~~~~--~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~   78 (343)
T 1ri6_A            6 TVYIASP-ESQQIHVWNLNHEGALTLTQVVD----VPGQVQPMV--VSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAA   78 (343)
T ss_dssp             EEEEEEG-GGTEEEEEEECTTSCEEEEEEEE----CSSCCCCEE--ECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEE
T ss_pred             EEEEeCC-CCCeEEEEEECCCCcEEEeeeEe----cCCCCceEE--ECCCCCEEEEeecCCCeEEEEEecCCCCceeecc
Confidence            3445546 79999999985 342  333332    234456667  999999988888766999999997  444332  


Q ss_pred             eecCCCCeeEEEECCCCCEEEEec-CCCcEEEEEcc---CcceeeeeccccCCeEEEEEccCCcEEEEee-CCCcEEEEe
Q 014475           76 KSLPAEPIKPIAANSHGTYIAGGG-QSGDIYMWEVA---SGRLLKKWHAHYRAVTCLVFSEDGSFLISGS-EDGCVRIWS  150 (424)
Q Consensus        76 ~~~~~~~v~~~~~s~~~~~l~~~~-~dg~v~iwd~~---~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~-~dg~i~iwd  150 (424)
                      .......+..++|+|+++++++++ .++.|.+||+.   +.+....+..+ ..+.+++|+|+++++++++ .++.|.+||
T Consensus        79 ~~~~~~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~~~d  157 (343)
T 1ri6_A           79 ESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGL-DGCHSANISPDNRTLWVPALKQDRICLFT  157 (343)
T ss_dssp             EEECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCC-TTBCCCEECTTSSEEEEEEGGGTEEEEEE
T ss_pred             ccccCCCCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccCC-CCceEEEECCCCCEEEEecCCCCEEEEEE
Confidence            222344889999999999886665 47889999994   44445555433 4588999999999888877 889999999


Q ss_pred             CCcccchhcccccccceEE--eec-CCcCceeEEEEEEcCceeEEE-EEeCCCcEEEEecCC--Cce--eeeee-c----
Q 014475          151 LLTVFEECESQRASHLYLH--SFT-GHTLRITDIVIGYGGVSATIV-SASEDRTCKVWSLLK--GRL--LRNIV-F----  217 (424)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~--~~~-~~~~~i~~~~~~~~~~~~~l~-~~~~d~~v~iwd~~~--~~~--~~~~~-~----  217 (424)
                      +.+..        ......  ... .....+..++|+|++  ++++ ++..++.+.+||+..  ++.  ...+. .    
T Consensus       158 ~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~pdg--~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~  227 (343)
T 1ri6_A          158 VSDDG--------HLVAQDPAEVTTVEGAGPRHMVFHPNE--QYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENF  227 (343)
T ss_dssp             ECTTS--------CEEEEEEEEEECSTTCCEEEEEECTTS--SEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTC
T ss_pred             ecCCC--------ceeeecccccccCCCCCcceEEECCCC--CEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccc
Confidence            96411        001111  122 233467889999998  6554 455889999999953  432  22222 1    


Q ss_pred             --CcceeEEEECCCCCEEEEEe-CCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeC-CCCcE
Q 014475          218 --PSVIDAIALDPAEHVFYAGS-RDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGS-EDGMV  292 (424)
Q Consensus       218 --~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~-~dg~i  292 (424)
                        ...+..++|+|++++++++. .++.|.+||+......     .+.+..+..+.. +..++|+| +++|++++ .++.|
T Consensus       228 ~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~-----~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~v  301 (343)
T 1ri6_A          228 SDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSV-----LSKEGFQPTETQ-PRGFNVDHSGKYLIAAGQKSHHI  301 (343)
T ss_dssp             CSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCC-----EEEEEEEECSSS-CCCEEECTTSSEEEEECTTTCEE
T ss_pred             cccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCc-----eEEeeeecCCCc-cceEEECCCCCEEEEecCCCCeE
Confidence              23466899999999887554 7899999999842110     134444444444 88999999 88777777 68999


Q ss_pred             EEE--eCCCCc--EEEEEeccCCCeeEEEEEecCce
Q 014475          293 RVW--DPITHN--IVRMFRLAKGPVNNILVVRRPLY  324 (424)
Q Consensus       293 ~iw--d~~~~~--~~~~~~~~~~~v~~l~~s~~~~~  324 (424)
                      .+|  |..+++  .+..+.. .....+++|.|+.+.
T Consensus       302 ~v~~~d~~~g~~~~~~~~~~-g~~p~~i~~~~~~~~  336 (343)
T 1ri6_A          302 SVYEIVGEQGLLHEKGRYAV-GQGPMWVVVNAHEGG  336 (343)
T ss_dssp             EEEEEETTTTEEEEEEEEEC-SSSCCEEEEEEEC--
T ss_pred             EEEEEcCCCceeeEcccccc-CCCCeeEEEEcccCC
Confidence            999  555664  3444543 245678888886543

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.95  E-value=1.3e-25  Score=200.76  Aligned_cols=275  Identities=13%  Similarity=0.038  Sum_probs=203.1

Q ss_pred             EEEeecCCCCCceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCceeeeecCCC-
Q 014475            3 LLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSLPAE-   81 (424)
Q Consensus         3 ~~lat~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~~~~~~-   81 (424)
                      .+|++++ .+++|.+||+.+++.+..+...... ..+..++  |+|+++.+++++..++.|.+||..+++......... 
T Consensus         2 ~~~v~~~-~~~~v~~~d~~~~~~~~~~~~~~~~-~~~~~~~--~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~   77 (337)
T 1pby_B            2 DYILAPA-RPDKLVVIDTEKMAVDKVITIADAG-PTPMVPM--VAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTP   77 (337)
T ss_dssp             EEEEEEE-TTTEEEEEETTTTEEEEEEECTTCT-TCCCCEE--ECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBT
T ss_pred             cEEEEcC-CCCeEEEEECCCCcEEEEEEcCCCC-CCccceE--EcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCc
Confidence            4688888 8999999999999998887643210 0244555  999998776665555999999998887654433322 


Q ss_pred             -----CeeEEEECCCCCEEEEec------------CCCcEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEeeCCC
Q 014475           82 -----PIKPIAANSHGTYIAGGG------------QSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDG  144 (424)
Q Consensus        82 -----~v~~~~~s~~~~~l~~~~------------~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg  144 (424)
                           .+..++|+|+|++++++.            .++.|.+||+.+++.+..+.. ...+.+++|+|++++++++  ++
T Consensus        78 ~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~--~~  154 (337)
T 1pby_B           78 EERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWARDGSKLYGL--GR  154 (337)
T ss_dssp             TEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECTTSSCEEEE--SS
T ss_pred             ccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-CCCcceeEECCCCCEEEEe--CC
Confidence                 678999999999998885            579999999999888777764 4567889999999988887  68


Q ss_pred             cEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeC-CC-----------------------c
Q 014475          145 CVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASE-DR-----------------------T  200 (424)
Q Consensus       145 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~-d~-----------------------~  200 (424)
                      .|.+||+.++.           ....+..+.. ...+.|+|++  ..++..+. ++                       .
T Consensus       155 ~i~~~d~~~~~-----------~~~~~~~~~~-~~~~~~s~dg--~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  220 (337)
T 1pby_B          155 DLHVMDPEAGT-----------LVEDKPIQSW-EAETYAQPDV--LAVWNQHESSGVMATPFYTARKDIDPADPTAYRTG  220 (337)
T ss_dssp             SEEEEETTTTE-----------EEEEECSTTT-TTTTBCCCBC--CCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEE
T ss_pred             eEEEEECCCCc-----------Eeeeeecccc-CCCceeCCCc--cEEeeeccCCCceeeeeeccccccccccccccccc
Confidence            89999996632           2222222220 0122567766  44433332 22                       4


Q ss_pred             EEEEecCCCceeeeee---cCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEe
Q 014475          201 CKVWSLLKGRLLRNIV---FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAY  277 (424)
Q Consensus       201 v~iwd~~~~~~~~~~~---~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  277 (424)
                      |.+||+.+++.. .+.   +...+..++|+|++++++++  ++.|++||+.+.         +.+..+.. ...+.+++|
T Consensus       221 v~~~d~~~~~~~-~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~---------~~~~~~~~-~~~~~~~~~  287 (337)
T 1pby_B          221 LLTMDLETGEMA-MREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKN---------ASIKRVPL-PHSYYSVNV  287 (337)
T ss_dssp             EEEEETTTCCEE-EEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTT---------EEEEEEEC-SSCCCEEEE
T ss_pred             eEEEeCCCCCce-EeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCC---------cCcceecC-CCceeeEEE
Confidence            789999988765 332   45567889999999999988  789999999875         33444432 356789999


Q ss_pred             cC-CCEEEEeCCCCcEEEEeCCCCcEEEEEeccCC
Q 014475          278 ST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKG  311 (424)
Q Consensus       278 ~~-~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~  311 (424)
                      +| +++|++++.++.|.+||+.+++.+..+..+.+
T Consensus       288 s~dg~~l~~~~~~~~i~v~d~~~~~~~~~~~~~~~  322 (337)
T 1pby_B          288 STDGSTVWLGGALGDLAAYDAETLEKKGQVDLPGN  322 (337)
T ss_dssp             CTTSCEEEEESBSSEEEEEETTTCCEEEEEECGGG
T ss_pred             CCCCCEEEEEcCCCcEEEEECcCCcEEEEEEcCCC
Confidence            99 88888889999999999999999988876543

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.95  E-value=7.4e-26  Score=202.92  Aligned_cols=275  Identities=13%  Similarity=0.135  Sum_probs=192.0

Q ss_pred             CccccCCCCceeEEEEECCC-Cc--eeeeecCCCCeeEEEECCCCCEEEEecCC-CcEEEEEcc--Ccc--eeeeecccc
Q 014475           51 QLREQPSASSGSILYWSWSK-PQ--VEVKSLPAEPIKPIAANSHGTYIAGGGQS-GDIYMWEVA--SGR--LLKKWHAHY  122 (424)
Q Consensus        51 ~~l~~~~~~~g~i~vwd~~~-~~--~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-g~v~iwd~~--~~~--~~~~~~~~~  122 (424)
                      +++++++..++.|.+|+++. ++  ......+...+.+++|+|++++|++++.+ +.|.+|++.  +++  .+..+..+.
T Consensus         5 ~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~   84 (343)
T 1ri6_A            5 QTVYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG   84 (343)
T ss_dssp             EEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS
T ss_pred             EEEEEeCCCCCeEEEEEECCCCcEEEeeeEecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC
Confidence            34444533349999999963 32  22334577789999999999988888776 899999997  554  334444433


Q ss_pred             CCeEEEEEccCCcEEEEeeC-CCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEe-CCCc
Q 014475          123 RAVTCLVFSEDGSFLISGSE-DGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSAS-EDRT  200 (424)
Q Consensus       123 ~~i~~~~~~~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~-~d~~  200 (424)
                       .+..++|+|+++++++++. ++.|.+||+.++.        .......+.. ...+.+++|+|++  +.+++++ .++.
T Consensus        85 -~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~--------~~~~~~~~~~-~~~~~~~~~s~dg--~~l~~~~~~~~~  152 (343)
T 1ri6_A           85 -SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGL--------PVGVVDVVEG-LDGCHSANISPDN--RTLWVPALKQDR  152 (343)
T ss_dssp             -CCSEEEECTTSSEEEEEETTTTEEEEEEEETTE--------EEEEEEEECC-CTTBCCCEECTTS--SEEEEEEGGGTE
T ss_pred             -CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCc--------cccccccccC-CCCceEEEECCCC--CEEEEecCCCCE
Confidence             7899999999998876665 8889999984210        1122233333 3458889999998  6677666 8999


Q ss_pred             EEEEecCC-Cceee----eee--cCcceeEEEECCCCCEEEEEe-CCCcEEEEEcCCCCCCCCCcCceeeeeecc---cC
Q 014475          201 CKVWSLLK-GRLLR----NIV--FPSVIDAIALDPAEHVFYAGS-RDGSIYIAALNAESPSTSSYGMHIIGSLSD---HS  269 (424)
Q Consensus       201 v~iwd~~~-~~~~~----~~~--~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~---~~  269 (424)
                      |.+||+.+ ++...    ...  ....+..++|+|+++++++++ .++.+.+|+++.......  .......+..   ..
T Consensus       153 v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~--~~~~~~~~~~~~~~~  230 (343)
T 1ri6_A          153 ICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIE--CVQTLDMMPENFSDT  230 (343)
T ss_dssp             EEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCE--EEEEEECSCTTCCSC
T ss_pred             EEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEE--EEeeccccCcccccc
Confidence            99999987 65432    222  345788999999999776655 789999999965221100  0011111111   13


Q ss_pred             cCeEEEEecC-CCEEE-EeCCCCcEEEEeCC----CCcEEEEEeccCCCeeEEEEEecCceeeecc-CCCceeeccCC
Q 014475          270 KAVTCLAYST-GDLLI-SGSEDGMVRVWDPI----THNIVRMFRLAKGPVNNILVVRRPLYLNLGS-FSNPHTSSRRH  340 (424)
Q Consensus       270 ~~i~~~~~~~-~~~l~-t~~~dg~i~iwd~~----~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~-~d~~i~iw~~~  340 (424)
                      ..+..++|+| +++|+ ++..++.|.+||+.    +.+.+..+..+.. +..++|+|++++|++++ .++.+.+|++.
T Consensus       231 ~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~v~v~~~d  307 (343)
T 1ri6_A          231 RWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQ-PRGFNVDHSGKYLIAAGQKSHHISVYEIV  307 (343)
T ss_dssp             CCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSS-CCCEEECTTSSEEEEECTTTCEEEEEEEE
T ss_pred             CCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCCc-cceEEECCCCCEEEEecCCCCeEEEEEEc
Confidence            4577899999 77666 56689999999998    3345556665544 89999999999887776 68999999665

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.95  E-value=1.3e-25  Score=229.98  Aligned_cols=317  Identities=11%  Similarity=0.057  Sum_probs=237.6

Q ss_pred             EEeecCCCCCceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCCC-----ceeEEEEECCCCceeeeec
Q 014475            4 LIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSAS-----SGSILYWSWSKPQVEVKSL   78 (424)
Q Consensus         4 ~lat~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~-----~g~i~vwd~~~~~~~~~~~   78 (424)
                      .||.++  ++.|.+|++..++.. .+..   |...+.+++  |+|||+.||.++.+     +..|.+|+..+++......
T Consensus        26 ~iaf~~--~~~l~~~~~~gg~~~-~lt~---~~~~v~~~~--~SPDG~~la~~s~~~~~~~~~~i~~~d~~~g~~~~lt~   97 (1045)
T 1k32_A           26 RIIFVC--CDDLWEHDLKSGSTR-KIVS---NLGVINNAR--FFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKRITY   97 (1045)
T ss_dssp             EEEEEE--TTEEEEEETTTCCEE-EEEC---SSSEEEEEE--ECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEECCC
T ss_pred             EEEEEE--CCcEEEEECCCCcEE-Eeee---CCCcccCeE--ECCCCCEEEEEEeeccCCCCCeEEEEECCCCCeEEccc
Confidence            355555  368999999877654 4544   446788888  99999999987532     2589999999887666666


Q ss_pred             CCCCe-------eEEEECCCCCEEEEecCC------CcEEEEEccCccee------------------------------
Q 014475           79 PAEPI-------KPIAANSHGTYIAGGGQS------GDIYMWEVASGRLL------------------------------  115 (424)
Q Consensus        79 ~~~~v-------~~~~~s~~~~~l~~~~~d------g~v~iwd~~~~~~~------------------------------  115 (424)
                      |...+       ..++|+|||+++++++.+      ..|++|++.+++..                              
T Consensus        98 ~~~~~~~~~~~~~~~~~SpDg~ll~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~spG~l~~~~~~~~~~~~~  177 (1045)
T 1k32_A           98 FSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPLNLGPATHILFADGRRVIGRNTFELPHWK  177 (1045)
T ss_dssp             CCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEECCSCSCSEEEEETTEEEEEESCSCCTTST
T ss_pred             CCCcccccccccccccCCCCCEEEEEECCcCCCcccceEEEEECCCCCeEEecCCCcceeeeCCCEEEEeccCCCccccc
Confidence            77777       899999999977777644      35888887665422                              


Q ss_pred             -------------------eeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCccc-chhccc------------cc
Q 014475          116 -------------------KKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVF-EECESQ------------RA  163 (424)
Q Consensus       116 -------------------~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~------------~~  163 (424)
                                         ..+.+|...+.++.|+++ ..+++++.++.+.+|.+.... ......            ..
T Consensus       178 ~~~g~~~~~lw~~~~~~~~~~l~~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~~~~~SpDG  256 (1045)
T 1k32_A          178 GYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVGH-RIYFITDIDGFGQIYSTDLDGKDLRKHTSFTDYYPRHLNTDG  256 (1045)
T ss_dssp             TCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEEETT-EEEEEECTTSSCEEEEEETTSCSCEECCCCCSSCEEEEEESS
T ss_pred             cccCCCcCCEEEECCCCCeEECcCCCCcccceEEeCC-EEEEEEeccCceEEEEEeCCCCcceEecCCCCcceeeEcCCC
Confidence                               112346677888999887 667778888999999764211 100000            00


Q ss_pred             c----------------cceEEeecC-----------CcCceeEEEEE-EcCceeEEEEEeCCCcEEEEecCCCceeeee
Q 014475          164 S----------------HLYLHSFTG-----------HTLRITDIVIG-YGGVSATIVSASEDRTCKVWSLLKGRLLRNI  215 (424)
Q Consensus       164 ~----------------~~~~~~~~~-----------~~~~i~~~~~~-~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~  215 (424)
                      .                ...+..+..           |...+.+++|+ |++  +.+++++ ++.+.+|++..++.....
T Consensus       257 ~~la~~~~~~i~~~d~~~~~l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG--~~la~~~-~~~i~~~~~~~~~~~~~~  333 (1045)
T 1k32_A          257 RRILFSKGGSIYIFNPDTEKIEKIEIGDLESPEDRIISIPSKFAEDFSPLDG--DLIAFVS-RGQAFIQDVSGTYVLKVP  333 (1045)
T ss_dssp             SCEEEEETTEEEEECTTTCCEEECCCCCCCBCCSEEEECGGGGEEEEEECGG--GCEEEEE-TTEEEEECTTSSBEEECS
T ss_pred             CEEEEEeCCEEEEecCCceEeeeeccCcccccccccccccccceeeecCCCC--CEEEEEE-cCEEEEEcCCCCceEEcc
Confidence            0                000111122           23368899999 998  7777777 789999999887765544


Q ss_pred             ecCc-ceeEEEECCCCCEEEEEeCCCcEE-EEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcE
Q 014475          216 VFPS-VIDAIALDPAEHVFYAGSRDGSIY-IAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMV  292 (424)
Q Consensus       216 ~~~~-~i~~~~~~~~~~~l~~~~~dg~i~-i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i  292 (424)
                      .+.. .+..++|+ +++.++.++.++.+. +|++..+.          ...+.+|...+..++|+| +++|++++.++.|
T Consensus       334 ~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~----------~~~l~~~~~~~~~~~~SpDG~~la~~~~~~~v  402 (1045)
T 1k32_A          334 EPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGK----------AEKFEENLGNVFAMGVDRNGKFAVVANDRFEI  402 (1045)
T ss_dssp             CCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCC----------EEECCCCCCSEEEEEECTTSSEEEEEETTSEE
T ss_pred             CCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCC----------ceEecCCccceeeeEECCCCCEEEEECCCCeE
Confidence            4666 89999999 999999998888888 88987753          223337778999999999 9999999999999


Q ss_pred             EEEeCCCCcEEEEEeccCCCeeEEEEEecCceeeeccCCC----------ceeeccCCCCC
Q 014475          293 RVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSN----------PHTSSRRHGSQ  343 (424)
Q Consensus       293 ~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~d~----------~i~iw~~~~~~  343 (424)
                      ++||+.+++....+..|.+.+..++|+|||++|++++.++          .|++|++.+++
T Consensus       403 ~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~  463 (1045)
T 1k32_A          403 MTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK  463 (1045)
T ss_dssp             EEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE
T ss_pred             EEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCc
Confidence            9999999998888878999999999999999999887654          89999998765

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.95  E-value=6e-25  Score=197.89  Aligned_cols=268  Identities=10%  Similarity=0.090  Sum_probs=209.2

Q ss_pred             ceEEecceeecCCCccccCCCC------ceeEEEEECCCCceeeeecCCCCeeEEEECCCCCEEE-EecCCCcEEEEEcc
Q 014475           38 GLACVGQRFLASSQLREQPSAS------SGSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIA-GGGQSGDIYMWEVA  110 (424)
Q Consensus        38 ~v~~~~~~~~~~~~~l~~~~~~------~g~i~vwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-~~~~dg~v~iwd~~  110 (424)
                      .+..++  |+|+++.+++++.+      ++.|.+||..+++..........+..++|+|++++++ +...++.|.+||..
T Consensus        42 ~~~~~~--~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~  119 (353)
T 3vgz_A           42 GAYEMA--YSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHNDLKPFGATINNTTQTLWFGNTVNSAVTAIDAK  119 (353)
T ss_dssp             SEEEEE--EETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEESSCCCSEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             CccceE--ECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecCCCcceEEECCCCCEEEEEecCCCEEEEEeCC
Confidence            456677  99999988887743      4899999999888766655566788999999999555 45567999999999


Q ss_pred             CcceeeeeccccCC---------eEEEEEccCCcEEEEee--CCCcEEEEeCCcccchhcccccccceEEeecCCcCcee
Q 014475          111 SGRLLKKWHAHYRA---------VTCLVFSEDGSFLISGS--EDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRIT  179 (424)
Q Consensus       111 ~~~~~~~~~~~~~~---------i~~~~~~~~~~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  179 (424)
                      +++.+..+..+...         +.++.|+|+++++++++  .++.|.+||+.+           ......+..+...+.
T Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~-----------~~~~~~~~~~~~~~~  188 (353)
T 3vgz_A          120 TGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGN-----------IKLKTAIQNTGKMST  188 (353)
T ss_dssp             TCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTT-----------TEEEEEECCCCTTCC
T ss_pred             CCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCC-----------CceEEEecCCCCccc
Confidence            99988877654432         78899999999877776  478899999965           233444544555678


Q ss_pred             EEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeeec-----CcceeEEEECCCCCEEEEEeC-CCcEEEEEcCCCCCC
Q 014475          180 DIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVF-----PSVIDAIALDPAEHVFYAGSR-DGSIYIAALNAESPS  253 (424)
Q Consensus       180 ~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~-----~~~i~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~  253 (424)
                      +++|++++  +.+++++.++.|.+||+.+++....+..     ...+..++|+|+++.+++++. ++.|.+||..++.  
T Consensus       189 ~~~~s~dg--~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~--  264 (353)
T 3vgz_A          189 GLALDSEG--KRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGN--  264 (353)
T ss_dssp             CCEEETTT--TEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCC--
T ss_pred             eEEECCCC--CEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCc--
Confidence            89999998  7888888999999999999998877763     345778999999998777765 4899999998763  


Q ss_pred             CCCcCceeeeeecccCcCeEEEEecC-CCE-EEEeCCCCcEEEEeCCCCcEEEEEeccCCCeeEEEEEecCceeeeccCC
Q 014475          254 TSSYGMHIIGSLSDHSKAVTCLAYST-GDL-LISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSFS  331 (424)
Q Consensus       254 ~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~-l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~d  331 (424)
                             .+..+..+.  ...++|+| +++ +++...++.|.+||..+++.+..+... ..+.+++|+|+|++|+++..+
T Consensus       265 -------~~~~~~~~~--~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~v~~~~  334 (353)
T 3vgz_A          265 -------ILAKVAAPE--SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTP-THPNSLALSADGKTLYVSVKQ  334 (353)
T ss_dssp             -------EEEEEECSS--CCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEECC-SEEEEEEECTTSCEEEEEEEC
T ss_pred             -------EEEEEEcCC--CceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEecC-CCCCeEEEcCCCCEEEEEEcc
Confidence                   333333322  25689999 774 455557999999999999999888754 467999999999988777655


Q ss_pred             C
Q 014475          332 N  332 (424)
Q Consensus       332 ~  332 (424)
                      +
T Consensus       335 ~  335 (353)
T 3vgz_A          335 K  335 (353)
T ss_dssp             C
T ss_pred             c
Confidence            4

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.95  E-value=2.7e-26  Score=226.79  Aligned_cols=299  Identities=11%  Similarity=0.053  Sum_probs=210.3

Q ss_pred             EeecCCCCCceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCCC--------ceeEEEEECCCCceeee
Q 014475            5 IASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSAS--------SGSILYWSWSKPQVEVK   76 (424)
Q Consensus         5 lat~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~--------~g~i~vwd~~~~~~~~~   76 (424)
                      +++ + .||+|++||+.+++....+..+......+..++  |+|||++|++++.+        ++.+.+||+.+++....
T Consensus        31 ~~~-~-~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~--~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l  106 (723)
T 1xfd_A           31 IYR-E-QKGTVRLWNVETNTSTVLIEGKKIESLRAIRYE--ISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSL  106 (723)
T ss_dssp             CCC-C-SSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEE--ECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEEC
T ss_pred             EEE-e-CCCCEEEEECCCCcEEEEeccccccccccceEE--ECCCCCEEEEEecCccceeecceeeEEEEECCCCceEec
Confidence            444 6 799999999999998877766543323577788  99999999988653        27899999998875322


Q ss_pred             ec---CCCCeeEEEECCCCCEEEEecCCCcEEEEEccCcceeeeeccccCCe------------------EEEEEccCCc
Q 014475           77 SL---PAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAV------------------TCLVFSEDGS  135 (424)
Q Consensus        77 ~~---~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i------------------~~~~~~~~~~  135 (424)
                      ..   +...+..++|||||+.||.++. +.|++||+.+++.......+...+                  .++.|+|||+
T Consensus       107 ~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~  185 (723)
T 1xfd_A          107 DPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGT  185 (723)
T ss_dssp             CCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSS
T ss_pred             cCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCC
Confidence            22   3335899999999999999875 799999999888766655544433                  7899999999


Q ss_pred             EEEEeeCCC----------------------------------cEEEEeCCcccchhcccccccceEEeecC------Cc
Q 014475          136 FLISGSEDG----------------------------------CVRIWSLLTVFEECESQRASHLYLHSFTG------HT  175 (424)
Q Consensus       136 ~l~s~~~dg----------------------------------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~------~~  175 (424)
                      +|++++.|+                                  .|++||+.++..           ...+..      +.
T Consensus       186 ~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~-----------~~~l~~~~~~~~~~  254 (723)
T 1xfd_A          186 RLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTH-----------DLEMMPPDDPRMRE  254 (723)
T ss_dssp             EEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCC-----------CEECCCCCCGGGSS
T ss_pred             EEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCce-----------eEEeeCCccCCCcc
Confidence            999887553                                  688888865321           122222      36


Q ss_pred             CceeEEEEEEcCceeEEEEEeC----CCcEEEEecCCCceeeeee--cCcce----eEEEECCCCCEEEE--EeCCC---
Q 014475          176 LRITDIVIGYGGVSATIVSASE----DRTCKVWSLLKGRLLRNIV--FPSVI----DAIALDPAEHVFYA--GSRDG---  240 (424)
Q Consensus       176 ~~i~~~~~~~~~~~~~l~~~~~----d~~v~iwd~~~~~~~~~~~--~~~~i----~~~~~~~~~~~l~~--~~~dg---  240 (424)
                      ..+..++|+|++  +++++...    +..|.+||+.+++....+.  +...+    ..++|+|+|+.|+.  +..++   
T Consensus       255 ~~~~~~~~SpDg--~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~  332 (723)
T 1xfd_A          255 YYITMVKWATST--KVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRG  332 (723)
T ss_dssp             EEEEEEEESSSS--EEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSS
T ss_pred             ceeEEEEEeCCC--eEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCc
Confidence            778999999998  77766643    3579999999988766554  23333    37899999997775  44566   


Q ss_pred             ---cEEEEEc-CCCCCCCCCcCceeeeeecccCcCeEE-EEecC-CCEEEEeCC-C--CcEEEEeCCCCc--EEEEEec-
Q 014475          241 ---SIYIAAL-NAESPSTSSYGMHIIGSLSDHSKAVTC-LAYST-GDLLISGSE-D--GMVRVWDPITHN--IVRMFRL-  308 (424)
Q Consensus       241 ---~i~i~d~-~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~-~~~l~t~~~-d--g~i~iwd~~~~~--~~~~~~~-  308 (424)
                         .|++||. ..+..       .....+..+...+.. ++|+| ++.|+..+. +  +.+++|++....  ....+.. 
T Consensus       333 ~~~~l~~~d~~~~~~~-------~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~  405 (723)
T 1xfd_A          333 KFYHITVSSSQPNSSN-------DNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCD  405 (723)
T ss_dssp             CEEEEEEECSSCCSSS-------CCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTT
T ss_pred             ceeEEEEEeccCCCCc-------cceeEeecCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCCCCCCcceeccc
Confidence               4666663 33210       002223333344444 68999 888865544 4  789999986432  3344443 


Q ss_pred             --cCCCeeEEEEEecCceeeec
Q 014475          309 --AKGPVNNILVVRRPLYLNLG  328 (424)
Q Consensus       309 --~~~~v~~l~~s~~~~~l~~~  328 (424)
                        |...+..++|+|||++|+..
T Consensus       406 ~~~~~~~~~~~~spdg~~l~~~  427 (723)
T 1xfd_A          406 LVENCTYFSASFSHSMDFFLLK  427 (723)
T ss_dssp             SSSSCCCCEEEECTTSSEEEEE
T ss_pred             ccCCCCeEEEEECCCCCEEEEE
Confidence              56778999999999988764

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.95  E-value=5.3e-26  Score=225.27  Aligned_cols=277  Identities=9%  Similarity=-0.000  Sum_probs=210.2

Q ss_pred             CCceEEecceeecCCCccccCCC-Cce-----eEEEEECCCCceeeeec-CC------------------------CCee
Q 014475           36 PHGLACVGQRFLASSQLREQPSA-SSG-----SILYWSWSKPQVEVKSL-PA------------------------EPIK   84 (424)
Q Consensus        36 ~~~v~~~~~~~~~~~~~l~~~~~-~~g-----~i~vwd~~~~~~~~~~~-~~------------------------~~v~   84 (424)
                      ...+..++  |+|||++|++++. + +     .|.+||+.+++...... +.                        ..+.
T Consensus        36 ~~~~~~~~--~SpdG~~la~~~~~d-~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  112 (741)
T 2ecf_A           36 GPTLMKPK--VAPDGSRVTFLRGKD-SDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIV  112 (741)
T ss_dssp             CCCCEEEE--ECTTSSEEEEEECCS-SCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESC
T ss_pred             CCCCCCce--EecCCCEEEEEeccC-CCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcc
Confidence            35577888  9999999999987 5 6     99999999887543332 21                        2388


Q ss_pred             EEEECCCCCEEEEecCCCcEEEEEccCcc--eeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccc
Q 014475           85 PIAANSHGTYIAGGGQSGDIYMWEVASGR--LLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQR  162 (424)
Q Consensus        85 ~~~~s~~~~~l~~~~~dg~v~iwd~~~~~--~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~  162 (424)
                      +++|||||++|++++. +.|++||+.++.  ....+..|...+.+++|+|||++|+.++. +.|++||+.++..      
T Consensus       113 ~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~~-~~i~~~d~~~g~~------  184 (741)
T 2ecf_A          113 DYQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIRG-RNLWVIDLASGRQ------  184 (741)
T ss_dssp             CCEECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEET-TEEEEEETTTTEE------
T ss_pred             eeEECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEeC-CcEEEEecCCCCE------
Confidence            9999999999999876 899999998873  45567778888999999999999998874 5899999966321      


Q ss_pred             cccceEEeecCCcC----------------ceeEEEEEEcCceeEEEEEeCCC---------------------------
Q 014475          163 ASHLYLHSFTGHTL----------------RITDIVIGYGGVSATIVSASEDR---------------------------  199 (424)
Q Consensus       163 ~~~~~~~~~~~~~~----------------~i~~~~~~~~~~~~~l~~~~~d~---------------------------  199 (424)
                           ......+..                .+..+.|+|++  +.|++++.|+                           
T Consensus       185 -----~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg--~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g  257 (741)
T 2ecf_A          185 -----MQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDD--SAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAG  257 (741)
T ss_dssp             -----EECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTS--SCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTT
T ss_pred             -----EEeccCCccceeccccceeeeeccccccceEECCCC--CEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCC
Confidence                 111111221                24789999999  7888887665                           


Q ss_pred             ------cEEEEecCC-Cceeeee---ecCcceeEEEECCCCCEEEEEeC-----CCcEEEEEcCCCCCCCCCcCceeeee
Q 014475          200 ------TCKVWSLLK-GRLLRNI---VFPSVIDAIALDPAEHVFYAGSR-----DGSIYIAALNAESPSTSSYGMHIIGS  264 (424)
Q Consensus       200 ------~v~iwd~~~-~~~~~~~---~~~~~i~~~~~~~~~~~l~~~~~-----dg~i~i~d~~~~~~~~~~~~~~~~~~  264 (424)
                            .|.+||+.+ ++.....   .+...+..++| |+|+.|++++.     +..|++||+.++.         ....
T Consensus       258 ~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~---------~~~~  327 (741)
T 2ecf_A          258 DANVQVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQ---------QRVL  327 (741)
T ss_dssp             SCCCEEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCC---------EEEE
T ss_pred             CCCCeeEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCc---------eEEE
Confidence                  788999988 7755433   25578899999 99999987764     5679999998863         2233


Q ss_pred             ecccCc----CeEEEEecC-CCEEEEeCCCCcEEEEeCC-CCcEEEEEeccCCCeeEE-EEEecCceee-eccCCC--ce
Q 014475          265 LSDHSK----AVTCLAYST-GDLLISGSEDGMVRVWDPI-THNIVRMFRLAKGPVNNI-LVVRRPLYLN-LGSFSN--PH  334 (424)
Q Consensus       265 ~~~~~~----~i~~~~~~~-~~~l~t~~~dg~i~iwd~~-~~~~~~~~~~~~~~v~~l-~~s~~~~~l~-~~~~d~--~i  334 (424)
                      +..+..    .+..++|+| ++++++++.||.++||.+. +++ ...+..|...+..+ .|+|+++.|+ +++.++  .+
T Consensus       328 ~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~  406 (741)
T 2ecf_A          328 AHETSPTWVPLHNSLRFLDDGSILWSSERTGFQHLYRIDSKGK-AAALTHGNWSVDELLAVDEKAGLAYFRAGIESARES  406 (741)
T ss_dssp             EEEECSSCCCCCSCCEECTTSCEEEEECTTSSCEEEEECSSSC-EEESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCB
T ss_pred             EEcCCCCcCCcCCceEECCCCeEEEEecCCCccEEEEEcCCCC-eeeeeecceEEEeEeEEeCCCCEEEEEEeCCCCceE
Confidence            333332    456889999 8899999999988888765 455 77888888888887 5999998775 455555  89


Q ss_pred             eeccCCC
Q 014475          335 TSSRRHG  341 (424)
Q Consensus       335 ~iw~~~~  341 (424)
                      ++|++..
T Consensus       407 ~l~~~~~  413 (741)
T 2ecf_A          407 QIYAVPL  413 (741)
T ss_dssp             EEEEEET
T ss_pred             EEEEEEc
Confidence            9998863

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.95  E-value=6.7e-25  Score=195.85  Aligned_cols=277  Identities=12%  Similarity=0.111  Sum_probs=197.2

Q ss_pred             eecCCCccccCCCCceeEEEEECCCCceeeee-cCCCCeeEEEECCCCCEEEEecC-CCcEEEEEccCcce-eeeecccc
Q 014475           46 FLASSQLREQPSASSGSILYWSWSKPQVEVKS-LPAEPIKPIAANSHGTYIAGGGQ-SGDIYMWEVASGRL-LKKWHAHY  122 (424)
Q Consensus        46 ~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~-dg~v~iwd~~~~~~-~~~~~~~~  122 (424)
                      |.++++.++++...++.|.+||..+++..... .+...+ .++|+|+++++++++. ++.|.+||+.+++. ...+..+.
T Consensus         5 ~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~   83 (331)
T 3u4y_A            5 FQTTSNFGIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQ   83 (331)
T ss_dssp             --CCCCEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEECS
T ss_pred             EcCCCCEEEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccCC
Confidence            56666665555544599999999988775443 345556 9999999997666555 88999999999987 77777676


Q ss_pred             CCeEEEEEccCCcEEEEeeCCC---cEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCC
Q 014475          123 RAVTCLVFSEDGSFLISGSEDG---CVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDR  199 (424)
Q Consensus       123 ~~i~~~~~~~~~~~l~s~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~  199 (424)
                      .+..+++|+|++++++++..++   .|.+||+.++           ..+..+.. .....+++|+|++. ..+++...++
T Consensus        84 ~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~-----------~~~~~~~~-~~~~~~~~~spdg~-~l~~~~~~~~  150 (331)
T 3u4y_A           84 SSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKN-----------KFISTIPI-PYDAVGIAISPNGN-GLILIDRSSA  150 (331)
T ss_dssp             SCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTT-----------EEEEEEEC-CTTEEEEEECTTSS-CEEEEEETTT
T ss_pred             CCccceEECCCCCEEEEecCCCCcccEEEEECCCC-----------CeEEEEEC-CCCccceEECCCCC-EEEEEecCCC
Confidence            6666699999999998665553   8999999653           22333333 33458999999983 3455556668


Q ss_pred             c-EEEEecCCCcee-----eeeecCcceeEEEECCCCCEEEEEe-CCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCe
Q 014475          200 T-CKVWSLLKGRLL-----RNIVFPSVIDAIALDPAEHVFYAGS-RDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAV  272 (424)
Q Consensus       200 ~-v~iwd~~~~~~~-----~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i  272 (424)
                      . +.+|++.....+     ..+.....+..++|+|+++++++++ .++.|++||+.++...      ..+..+. ....+
T Consensus       151 ~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~------~~~~~~~-~~~~~  223 (331)
T 3u4y_A          151 NTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENI------TLLNAVG-TNNLP  223 (331)
T ss_dssp             TEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSC------EEEEEEE-CSSCC
T ss_pred             ceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCccc------ceeeecc-CCCCC
Confidence            8 999998754332     2223456689999999999766554 6889999999876420      1133443 34667


Q ss_pred             EEEEecC-CCEEEEe-CCCCcEEEEeCCCCcE--EEEEecc----CCC---eeEEEEEecCceeeec-cCCCceeeccCC
Q 014475          273 TCLAYST-GDLLISG-SEDGMVRVWDPITHNI--VRMFRLA----KGP---VNNILVVRRPLYLNLG-SFSNPHTSSRRH  340 (424)
Q Consensus       273 ~~~~~~~-~~~l~t~-~~dg~i~iwd~~~~~~--~~~~~~~----~~~---v~~l~~s~~~~~l~~~-~~d~~i~iw~~~  340 (424)
                      ..++|+| +++++++ ..++.|.+||+.+++.  +..+..+    ..+   ...++|+|++++|+++ ..++.|.+|++.
T Consensus       224 ~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~  303 (331)
T 3u4y_A          224 GTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTIS  303 (331)
T ss_dssp             CCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETT
T ss_pred             ceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEec
Confidence            8899999 8866554 4578899999999887  4444432    222   3558999999988654 556799999998


Q ss_pred             CCC
Q 014475          341 GSQ  343 (424)
Q Consensus       341 ~~~  343 (424)
                      +..
T Consensus       304 ~~~  306 (331)
T 3u4y_A          304 GKV  306 (331)
T ss_dssp             SCE
T ss_pred             CCc
Confidence            543

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.94  E-value=1.3e-25  Score=200.74  Aligned_cols=265  Identities=12%  Similarity=0.075  Sum_probs=202.3

Q ss_pred             ccccCCCCceeEEEEECCCCceeeeecCCC---CeeEEEECCCCCEE-EEecCCCcEEEEEccCcceeeeeccc-----c
Q 014475           52 LREQPSASSGSILYWSWSKPQVEVKSLPAE---PIKPIAANSHGTYI-AGGGQSGDIYMWEVASGRLLKKWHAH-----Y  122 (424)
Q Consensus        52 ~l~~~~~~~g~i~vwd~~~~~~~~~~~~~~---~v~~~~~s~~~~~l-~~~~~dg~v~iwd~~~~~~~~~~~~~-----~  122 (424)
                      ++++++.+ +.|.+||..+++.........   .+..++|+|+++.+ +++..++.|.+||+.+++.+..+...     .
T Consensus         3 ~~v~~~~~-~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~   81 (337)
T 1pby_B            3 YILAPARP-DKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERV   81 (337)
T ss_dssp             EEEEEETT-TEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEE
T ss_pred             EEEEcCCC-CeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCccccc
Confidence            45666666 999999999887765554444   68999999999766 45566789999999999887766531     2


Q ss_pred             CCeEEEEEccCCcEEEEee------------CCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCcee
Q 014475          123 RAVTCLVFSEDGSFLISGS------------EDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSA  190 (424)
Q Consensus       123 ~~i~~~~~~~~~~~l~s~~------------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  190 (424)
                      ..+.+++|+|++++++++.            .++.|.+||+.++           .....+.. ...+.+++|+|++  +
T Consensus        82 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~-----------~~~~~~~~-~~~~~~~~~s~dg--~  147 (337)
T 1pby_B           82 KSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETL-----------SRRKAFEA-PRQITMLAWARDG--S  147 (337)
T ss_dssp             ECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTT-----------EEEEEEEC-CSSCCCEEECTTS--S
T ss_pred             ccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCC-----------cEEEEEeC-CCCcceeEECCCC--C
Confidence            3677899999999988886            5799999999652           22233332 3457788999998  6


Q ss_pred             EEEEEeCCCcEEEEecCCCceeeeeecCcceeEEEECCCCCEEEEEeCCC------------------------cEEEEE
Q 014475          191 TIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDG------------------------SIYIAA  246 (424)
Q Consensus       191 ~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg------------------------~i~i~d  246 (424)
                      +++++  ++.|.+||+.+++....+........+.|+|++..+++.+..+                        .|.+||
T Consensus       148 ~l~~~--~~~i~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d  225 (337)
T 1pby_B          148 KLYGL--GRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMD  225 (337)
T ss_dssp             CEEEE--SSSEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEE
T ss_pred             EEEEe--CCeEEEEECCCCcEeeeeeccccCCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEe
Confidence            67766  6889999999998887776433222347899988776554333                        468899


Q ss_pred             cCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCCCcEEEEEeccCCCeeEEEEEecCcee
Q 014475          247 LNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYL  325 (424)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l  325 (424)
                      +.++.        .....+..+...+.+++|+| +++++++  ++.|.+||+.+++.+..+..+ ..+.+++|+|++++|
T Consensus       226 ~~~~~--------~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l  294 (337)
T 1pby_B          226 LETGE--------MAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPLP-HSYYSVNVSTDGSTV  294 (337)
T ss_dssp             TTTCC--------EEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEECS-SCCCEEEECTTSCEE
T ss_pred             CCCCC--------ceEeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceecCC-CceeeEEECCCCCEE
Confidence            98764        11333445667788999999 8888888  799999999999988888743 567899999999999


Q ss_pred             eeccCCCceeeccCCCCCC
Q 014475          326 NLGSFSNPHTSSRRHGSQL  344 (424)
Q Consensus       326 ~~~~~d~~i~iw~~~~~~~  344 (424)
                      ++++.++.|.+|++.+.+.
T Consensus       295 ~~~~~~~~i~v~d~~~~~~  313 (337)
T 1pby_B          295 WLGGALGDLAAYDAETLEK  313 (337)
T ss_dssp             EEESBSSEEEEEETTTCCE
T ss_pred             EEEcCCCcEEEEECcCCcE
Confidence            9889999999999987754

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.94  E-value=4.1e-25  Score=226.22  Aligned_cols=312  Identities=13%  Similarity=0.038  Sum_probs=233.9

Q ss_pred             EeecCCCCCceEEEeCCCCceEEEeeCCCC--------CCCceEEecceee-cCCCccccCCCCceeEEEEECCCCceee
Q 014475            5 IASSSVADTGIGCWDLESGAEQLRYKSCAS--------PPHGLACVGQRFL-ASSQLREQPSASSGSILYWSWSKPQVEV   75 (424)
Q Consensus         5 lat~~~~dg~i~vwd~~~~~~~~~~~~~~~--------~~~~v~~~~~~~~-~~~~~l~~~~~~~g~i~vwd~~~~~~~~   75 (424)
                      ||.+.  ++.|.+||+..+ .+..+..+..        +...+..++  |+ |+|+.+++++ + +.|.+|+...++...
T Consensus       259 la~~~--~~~i~~~d~~~~-~l~~l~~~~~~~~~~~~~~~~~v~~~~--~S~pdG~~la~~~-~-~~i~~~~~~~~~~~~  331 (1045)
T 1k32_A          259 ILFSK--GGSIYIFNPDTE-KIEKIEIGDLESPEDRIISIPSKFAED--FSPLDGDLIAFVS-R-GQAFIQDVSGTYVLK  331 (1045)
T ss_dssp             EEEEE--TTEEEEECTTTC-CEEECCCCCCCBCCSEEEECGGGGEEE--EEECGGGCEEEEE-T-TEEEEECTTSSBEEE
T ss_pred             EEEEe--CCEEEEecCCce-EeeeeccCcccccccccccccccceee--ecCCCCCEEEEEE-c-CEEEEEcCCCCceEE
Confidence            44444  788999999544 3445543211        223577788  99 9999999887 3 899999998877655


Q ss_pred             eecCCC-CeeEEEECCCCCEEEEecCCCcEE-EEEccCcceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCc
Q 014475           76 KSLPAE-PIKPIAANSHGTYIAGGGQSGDIY-MWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLT  153 (424)
Q Consensus        76 ~~~~~~-~v~~~~~s~~~~~l~~~~~dg~v~-iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~  153 (424)
                      ...+.. .+..++|+ ||+.|++++.++.+. +||+.+++... +..|...+..++|+|++++|++++.++.|++||+.+
T Consensus       332 ~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~~-l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~t  409 (1045)
T 1k32_A          332 VPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAEK-FEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLET  409 (1045)
T ss_dssp             CSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCEEE-CCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred             ccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCceE-ecCCccceeeeEECCCCCEEEEECCCCeEEEEECCC
Confidence            555666 89999999 999999988888888 99988776544 347888999999999999999999999999999965


Q ss_pred             ccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCC----------cEEEEecCCCceeeeeecCcceeE
Q 014475          154 VFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDR----------TCKVWSLLKGRLLRNIVFPSVIDA  223 (424)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~----------~v~iwd~~~~~~~~~~~~~~~i~~  223 (424)
                      +           ........|...+.+++|+|++  ++|++++.++          .|++||+.+++......+...+..
T Consensus       410 g-----------~~~~~~~~~~~~v~~~~~SpDG--~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~~~~l~~~~~~~~~  476 (1045)
T 1k32_A          410 G-----------KPTVIERSREAMITDFTISDNS--RFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYA  476 (1045)
T ss_dssp             C-----------CEEEEEECSSSCCCCEEECTTS--CEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECSCSSSBEEE
T ss_pred             C-----------ceEEeccCCCCCccceEECCCC--CeEEEEecCccccccCCCCCeEEEEECCCCcEEEeeCCCcccCC
Confidence            2           2333445788899999999998  7888777644          899999998874433346777889


Q ss_pred             EEECCCCCEEEEEeCCCcEEEEEcCCCCCCCC----------------C-----------------c-CceeeeeecccC
Q 014475          224 IALDPAEHVFYAGSRDGSIYIAALNAESPSTS----------------S-----------------Y-GMHIIGSLSDHS  269 (424)
Q Consensus       224 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~----------------~-----------------~-~~~~~~~~~~~~  269 (424)
                      ++|+|+|+.|+.++.++....|+.........                .                 . ....+..+..|.
T Consensus       477 ~~~spdG~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~l~~~~  556 (1045)
T 1k32_A          477 PAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDP  556 (1045)
T ss_dssp             EEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCC
T ss_pred             ceEcCCCCEEEEEecccCCcCcchhccccccccCceeEEEEeCCCCCCccccCcCccccccccccccCHhHceEEcCCCC
Confidence            99999999999999887777776543211000                0                 0 001123344567


Q ss_pred             cCeEEEEecC-CCEEEE-------------eCCCCcEEEEeCCCCcEEEEEeccCCCeeEEEEEecCceeeeccCCCcee
Q 014475          270 KAVTCLAYST-GDLLIS-------------GSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHT  335 (424)
Q Consensus       270 ~~i~~~~~~~-~~~l~t-------------~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~d~~i~  335 (424)
                      ..+..++++| +.++++             ......|.+||+.+++.....    ..+..++|+|||++|++++.+ .++
T Consensus       557 ~~~~~~~~s~dg~~~~~~~~~g~~~~~~~~~~~~~~l~~~d~~~~~~~~l~----~~v~~~~~S~DG~~l~~~~~~-~i~  631 (1045)
T 1k32_A          557 GDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTEVK----NNLTDLRLSADRKTVMVRKDD-GKI  631 (1045)
T ss_dssp             BCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEEEEE----EEEEEEEECTTSCEEEEEETT-SCE
T ss_pred             CChhheEEcCCCeEEEEecccCcccccccccCCCceEEEEECCCCcEEEee----cCcceEEECCCCCEEEEEcCC-cEE
Confidence            7899999999 766664             123557899999988754333    568899999999999998766 899


Q ss_pred             eccCCCCC
Q 014475          336 SSRRHGSQ  343 (424)
Q Consensus       336 iw~~~~~~  343 (424)
                      +|++.+.+
T Consensus       632 ~~d~~~~~  639 (1045)
T 1k32_A          632 YTFPLEKP  639 (1045)
T ss_dssp             EEEESSCT
T ss_pred             EEeCccCc
Confidence            99998765

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.94  E-value=4.2e-25  Score=193.53  Aligned_cols=254  Identities=13%  Similarity=0.075  Sum_probs=189.3

Q ss_pred             ecCCCCCceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCC-Cceeeee-cC-CCCe
Q 014475            7 SSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSK-PQVEVKS-LP-AEPI   83 (424)
Q Consensus         7 t~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~-~~~~~~~-~~-~~~v   83 (424)
                      +++ .|++|++||+.+++..... .+   ...+.+++  |+|+++++++++ + +.|.+||+.+ ++..... .+ ...+
T Consensus        17 ~~~-~~~~i~~~d~~~~~~~~~~-~~---~~~v~~~~--~spdg~~l~~~~-~-~~i~~~d~~~~~~~~~~~~~~~~~~~   87 (297)
T 2ojh_A           17 GGS-MRSSIEIFNIRTRKMRVVW-QT---PELFEAPN--WSPDGKYLLLNS-E-GLLYRLSLAGDPSPEKVDTGFATICN   87 (297)
T ss_dssp             -CC-CCEEEEEEETTTTEEEEEE-EE---SSCCEEEE--ECTTSSEEEEEE-T-TEEEEEESSSCCSCEECCCTTCCCBC
T ss_pred             CCC-cceeEEEEeCCCCceeeec-cC---CcceEeeE--ECCCCCEEEEEc-C-CeEEEEeCCCCCCceEeccccccccc
Confidence            345 7899999999988876444 33   45678888  999999999876 4 8999999988 6654333 23 4688


Q ss_pred             eEEEECCCCCEEEEec--CCCcEEEEEc--cCcceeeeeccccCCeEEEEEccCCcEEE-EeeCCCcEEEEeCCcccchh
Q 014475           84 KPIAANSHGTYIAGGG--QSGDIYMWEV--ASGRLLKKWHAHYRAVTCLVFSEDGSFLI-SGSEDGCVRIWSLLTVFEEC  158 (424)
Q Consensus        84 ~~~~~s~~~~~l~~~~--~dg~v~iwd~--~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-s~~~dg~i~iwd~~~~~~~~  158 (424)
                      .+++|+|++++|++++  .++...||.+  .++. ...+..+ ..+..++|+|+++.|+ +++.++.+++|+++..    
T Consensus        88 ~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~----  161 (297)
T 2ojh_A           88 NDHGISPDGALYAISDKVEFGKSAIYLLPSTGGT-PRLMTKN-LPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDID----  161 (297)
T ss_dssp             SCCEECTTSSEEEEEECTTTSSCEEEEEETTCCC-CEECCSS-SSEEEEEECTTSSEEEEEEEETTEEEEEEEETT----
T ss_pred             cceEECCCCCEEEEEEeCCCCcceEEEEECCCCc-eEEeecC-CCccceEECCCCCEEEEEECCCCceEEEEEECC----
Confidence            9999999999999988  3345555544  4444 3444433 3489999999999877 7788999999986421    


Q ss_pred             cccccccceEEeecCCcCceeEEEEEEcCceeEEEEEe-CCCcEEEEecC-CCceeeeee-cCcceeEEEECCCCCEEEE
Q 014475          159 ESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSAS-EDRTCKVWSLL-KGRLLRNIV-FPSVIDAIALDPAEHVFYA  235 (424)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~-~d~~v~iwd~~-~~~~~~~~~-~~~~i~~~~~~~~~~~l~~  235 (424)
                            ......+..+...+.+++|+|++  +.++.++ .++.+++|++. .+.....+. +...+..++|+|++++|++
T Consensus       162 ------~~~~~~~~~~~~~~~~~~~s~dg--~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~  233 (297)
T 2ojh_A          162 ------SGVETRLTHGEGRNDGPDYSPDG--RWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVF  233 (297)
T ss_dssp             ------TCCEEECCCSSSCEEEEEECTTS--SEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEE
T ss_pred             ------CCcceEcccCCCccccceECCCC--CEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEE
Confidence                  11234556678889999999998  6666555 58999999986 444444444 6678899999999999988


Q ss_pred             EeCC-----------CcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCCC
Q 014475          236 GSRD-----------GSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDG  290 (424)
Q Consensus       236 ~~~d-----------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg  290 (424)
                      ++.+           +.|++||+.++.       ...+..+.+|...+..++|+| +++|++++.+.
T Consensus       234 ~~~~~~~~~~~~~~~~~l~~~d~~~~~-------~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~  293 (297)
T 2ojh_A          234 VSYDADVFDHPRDLDVRVQLMDMDGGN-------VETLFDLFGGQGTMNSPNWSPDGDEFAYVRYFP  293 (297)
T ss_dssp             EEEETTCCSCCSSEEEEEEEEETTSCS-------CEEEEEEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred             EEcCCCCCcccccCceEEEEEecCCCC-------ceeeeccCCCCcccccceECCCCCEEEEEEecc
Confidence            8765           569999998764       234455557888999999999 88888876553

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.93  E-value=3.6e-25  Score=218.70  Aligned_cols=276  Identities=8%  Similarity=-0.001  Sum_probs=195.3

Q ss_pred             eEEecceeecCCCccccCCCCceeEEEEECCCCceeeeec-CCC---CeeEEEECCCCCEEEEecCC---------CcEE
Q 014475           39 LACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSL-PAE---PIKPIAANSHGTYIAGGGQS---------GDIY  105 (424)
Q Consensus        39 v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~~~-~~~---~v~~~~~s~~~~~l~~~~~d---------g~v~  105 (424)
                      ...++  |+|+|+++++ +.+ |+|++||..+++...... +..   .|.+++|||||++|++++.+         +.++
T Consensus        19 ~~~~~--~spdg~~~~~-~~d-g~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~   94 (723)
T 1xfd_A           19 DPEAK--WISDTEFIYR-EQK-GTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYV   94 (723)
T ss_dssp             CCCCC--BSSSSCBCCC-CSS-SCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEE
T ss_pred             ccccE--EcCCCcEEEE-eCC-CCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEE
Confidence            44556  9999997766 555 999999999887654443 332   49999999999999998764         7789


Q ss_pred             EEEccCcce--eeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcC-------
Q 014475          106 MWEVASGRL--LKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTL-------  176 (424)
Q Consensus       106 iwd~~~~~~--~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-------  176 (424)
                      +||+.+++.  +.....|...+..++|+|||+.|+.++. +.|++||+.++..           ......+..       
T Consensus        95 ~~d~~~~~~~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~-----------~~~~~~~~~~~~~~g~  162 (723)
T 1xfd_A           95 LSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQA-----------IRVVSTGKEGVIYNGL  162 (723)
T ss_dssp             EEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCC-----------EEEECCCBTTTEEEEE
T ss_pred             EEECCCCceEeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCce-----------EEEecCCCCCceECcc
Confidence            999998876  2222345556889999999999999886 7999999976321           112222222       


Q ss_pred             -----------ceeEEEEEEcCceeEEEEEeCCC----------------------------------cEEEEecCCCce
Q 014475          177 -----------RITDIVIGYGGVSATIVSASEDR----------------------------------TCKVWSLLKGRL  211 (424)
Q Consensus       177 -----------~i~~~~~~~~~~~~~l~~~~~d~----------------------------------~v~iwd~~~~~~  211 (424)
                                 .+.+++|+|++  +.|++++.++                                  .|++||+.+++.
T Consensus       163 ~~~v~~ee~~~~~~~~~~SpDg--~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~  240 (723)
T 1xfd_A          163 SDWLYEEEILKTHIAHWWSPDG--TRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTH  240 (723)
T ss_dssp             CCHHHHHTTSSSSEEEEECTTS--SEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCC
T ss_pred             cceeEEEEeccCcceEEECCCC--CEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCce
Confidence                       23789999999  7888877543                                  799999998876


Q ss_pred             eeeeec-------CcceeEEEECCCCCEEEEEeC----CCcEEEEEcCCCCCCCCCcCceeeeeec-ccCcCe----EEE
Q 014475          212 LRNIVF-------PSVIDAIALDPAEHVFYAGSR----DGSIYIAALNAESPSTSSYGMHIIGSLS-DHSKAV----TCL  275 (424)
Q Consensus       212 ~~~~~~-------~~~i~~~~~~~~~~~l~~~~~----dg~i~i~d~~~~~~~~~~~~~~~~~~~~-~~~~~i----~~~  275 (424)
                      ...+..       ...+..++|+|+|+++++...    +..|++||+.++.         ....+. .+...+    ..+
T Consensus       241 ~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~---------~~~~~~~~~~~~~~~~~~~~  311 (723)
T 1xfd_A          241 DLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGV---------CTKKHEDESEAWLHRQNEEP  311 (723)
T ss_dssp             CEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCC---------EEEEEEEECSSCCCCCCCCC
T ss_pred             eEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCc---------ceEEEEeccCCEEeccCCCc
Confidence            455542       467899999999998877653    3579999998763         222222 233333    378


Q ss_pred             EecC-CCEEEE--eCCCC------cEEEEe-CCCCc--EEEEEeccCCCeeE-EEEEecCceeeeccCC---CceeeccC
Q 014475          276 AYST-GDLLIS--GSEDG------MVRVWD-PITHN--IVRMFRLAKGPVNN-ILVVRRPLYLNLGSFS---NPHTSSRR  339 (424)
Q Consensus       276 ~~~~-~~~l~t--~~~dg------~i~iwd-~~~~~--~~~~~~~~~~~v~~-l~~s~~~~~l~~~~~d---~~i~iw~~  339 (424)
                      +|+| ++.|+.  +..++      .|.+|| ...++  +...+..+...+.. ++|+|||+.|+..+.+   +.+++|++
T Consensus       312 ~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~  391 (723)
T 1xfd_A          312 VFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSA  391 (723)
T ss_dssp             EECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEE
T ss_pred             eEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEE
Confidence            9999 876664  45666      577788 34444  14555544445554 6999999999765554   78999988


Q ss_pred             CC
Q 014475          340 HG  341 (424)
Q Consensus       340 ~~  341 (424)
                      ..
T Consensus       392 ~~  393 (723)
T 1xfd_A          392 NT  393 (723)
T ss_dssp             CS
T ss_pred             eC
Confidence            64

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.93  E-value=3.4e-23  Score=186.05  Aligned_cols=264  Identities=10%  Similarity=0.104  Sum_probs=184.5

Q ss_pred             eeEEEEECCC--Cceee--eecCCCCeeEEEECCCCCEEEEecC---CCcEEEEEccCcc--eeeeeccccCCeEEEEEc
Q 014475           61 GSILYWSWSK--PQVEV--KSLPAEPIKPIAANSHGTYIAGGGQ---SGDIYMWEVASGR--LLKKWHAHYRAVTCLVFS  131 (424)
Q Consensus        61 g~i~vwd~~~--~~~~~--~~~~~~~v~~~~~s~~~~~l~~~~~---dg~v~iwd~~~~~--~~~~~~~~~~~i~~~~~~  131 (424)
                      +.|.+|+++.  ++...  ...+...+..++|+|+|+ |++++.   ++.|.+|++.+++  .+..+..+...+..++|+
T Consensus        16 ~~i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~s   94 (347)
T 3hfq_A           16 QGIYQGTLDTTAKTLTNDGLLAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVD   94 (347)
T ss_dssp             CEEEEEEEETTTTEEEEEEEEEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEE
T ss_pred             CCEEEEEEcCCCCeEEEeeeeeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEEC
Confidence            6777877654  44332  233456788999999999 555443   6899999997765  344445577888999999


Q ss_pred             cCCcEEEEee-CCCcEEEEeCCcccchhcccccccceEEeecC---------CcCceeEEEEEEcCceeEEEEEeCCCcE
Q 014475          132 EDGSFLISGS-EDGCVRIWSLLTVFEECESQRASHLYLHSFTG---------HTLRITDIVIGYGGVSATIVSASEDRTC  201 (424)
Q Consensus       132 ~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~---------~~~~i~~~~~~~~~~~~~l~~~~~d~~v  201 (424)
                      |++++|++++ .++.+.+|++....        ....+..+..         +...+.+++|+|++  +.+++...++.|
T Consensus        95 pdg~~l~~~~~~~~~v~v~~~~~~g--------~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg--~l~v~~~~~~~v  164 (347)
T 3hfq_A           95 EARQLVYSANYHKGTAEVMKIAADG--------ALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDN--RLAVIDLGSDKV  164 (347)
T ss_dssp             TTTTEEEEEETTTTEEEEEEECTTS--------CEEEEEEEECCCCCSSTTCSSCCEEEEEECTTS--CEEEEETTTTEE
T ss_pred             CCCCEEEEEeCCCCEEEEEEeCCCC--------CeeecceeecCCCCCCccccCCCceEEEECCCC--cEEEEeCCCCEE
Confidence            9999888887 67899999985311        1111222211         22357889999998  666666678899


Q ss_pred             EEEecC-CCceeee--ee--cCcceeEEEECCCCCEEEE-EeCCCcEEEEEcCCCCCCCCCcCceeeeeecccC------
Q 014475          202 KVWSLL-KGRLLRN--IV--FPSVIDAIALDPAEHVFYA-GSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHS------  269 (424)
Q Consensus       202 ~iwd~~-~~~~~~~--~~--~~~~i~~~~~~~~~~~l~~-~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~------  269 (424)
                      .+||+. +++....  +.  ....+..++|+|+|+++++ ...++.+.+|+++.....     ...........      
T Consensus       165 ~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~-----~~~~~~~~~~~~~~~~~  239 (347)
T 3hfq_A          165 YVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGA-----FTQLGIVKTIPADYTAH  239 (347)
T ss_dssp             EEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTE-----EEEEEEEESSCTTCCSC
T ss_pred             EEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCc-----eEEeeeeeecCCCCCCC
Confidence            999998 4543322  22  2346788999999997666 456789999998852210     12222222222      


Q ss_pred             cCeEEEEecC-CCEE-EEeCCCCcEEEEeCCC---CcEEEEEeccCCCeeEEEEEecCceeeeccC-CCceeeccCC
Q 014475          270 KAVTCLAYST-GDLL-ISGSEDGMVRVWDPIT---HNIVRMFRLAKGPVNNILVVRRPLYLNLGSF-SNPHTSSRRH  340 (424)
Q Consensus       270 ~~i~~~~~~~-~~~l-~t~~~dg~i~iwd~~~---~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~-d~~i~iw~~~  340 (424)
                      ..+..++|+| +++| ++...++.|.+|++..   .+.+..+..+...+..++|+|||++|++++. ++.+.+|++.
T Consensus       240 ~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d  316 (347)
T 3hfq_A          240 NGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARD  316 (347)
T ss_dssp             CEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred             CcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEe
Confidence            4588899999 8866 5556789999999973   3556666666677899999999998887765 4889999553

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.92  E-value=5.4e-23  Score=184.76  Aligned_cols=282  Identities=12%  Similarity=0.136  Sum_probs=186.1

Q ss_pred             CeEEEeecCC---CCCceEEEeCC--CCceEE-EeeCCCCCCCceEEecceeecCCCccccCCC--CceeEEEEECCCCc
Q 014475            1 MELLIASSSV---ADTGIGCWDLE--SGAEQL-RYKSCASPPHGLACVGQRFLASSQLREQPSA--SSGSILYWSWSKPQ   72 (424)
Q Consensus         1 ~e~~lat~~~---~dg~i~vwd~~--~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~--~~g~i~vwd~~~~~   72 (424)
                      |.-.++.|++   .++.|.+|++.  +++... ....+.   .....++  |+|+|+ +++++.  +++.|.+|++.+++
T Consensus         1 ~~~~~~vg~y~~~~~~~i~v~~~d~~tg~~~~~~~~~~~---~~p~~~a--~spdg~-l~~~~~~~~~~~v~~~~~~~g~   74 (347)
T 3hfq_A            1 MQERILFGTYTKKTSQGIYQGTLDTTAKTLTNDGLLAAT---QNPTYLA--LSAKDC-LYSVDKEDDEGGIAAWQIDGQT   74 (347)
T ss_dssp             CEEEEEEEECCSSSCCEEEEEEEETTTTEEEEEEEEEEC---SCCCCEE--ECTTCE-EEEEEEETTEEEEEEEEEETTE
T ss_pred             CCcEEEEEeccCCCCCCEEEEEEcCCCCeEEEeeeeecc---CCcceEE--EccCCe-EEEEEecCCCceEEEEEecCCc
Confidence            3444455521   35567777664  555433 122222   3344556  999999 555543  24899999997765


Q ss_pred             eeee---ecCCCCeeEEEECCCCCEEEEec-CCCcEEEEEccC-cc--eeeeecc---------ccCCeEEEEEccCCcE
Q 014475           73 VEVK---SLPAEPIKPIAANSHGTYIAGGG-QSGDIYMWEVAS-GR--LLKKWHA---------HYRAVTCLVFSEDGSF  136 (424)
Q Consensus        73 ~~~~---~~~~~~v~~~~~s~~~~~l~~~~-~dg~v~iwd~~~-~~--~~~~~~~---------~~~~i~~~~~~~~~~~  136 (424)
                      ....   ..+...+..++|+|+|++|++++ .++.|.+|++.. +.  .+..+..         +...+.+++|+|++++
T Consensus        75 ~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l  154 (347)
T 3hfq_A           75 AHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRL  154 (347)
T ss_dssp             EEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCE
T ss_pred             EEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcE
Confidence            4322   23567889999999999888877 678999999963 22  2222221         1234889999999996


Q ss_pred             EEEeeCCCcEEEEeCCcccchhcccccccceEEeecC-CcCceeEEEEEEcCceeEE-EEEeCCCcEEEEecCC--Ccee
Q 014475          137 LISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTG-HTLRITDIVIGYGGVSATI-VSASEDRTCKVWSLLK--GRLL  212 (424)
Q Consensus       137 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~l-~~~~~d~~v~iwd~~~--~~~~  212 (424)
                      +++...++.|.+|++...        ........+.. .......++|+|++  +++ ++...++.+.+|++..  ++..
T Consensus       155 ~v~~~~~~~v~~~~~~~~--------g~~~~~~~~~~~~g~~p~~~~~spdg--~~l~v~~~~~~~v~v~~~~~~~g~~~  224 (347)
T 3hfq_A          155 AVIDLGSDKVYVYNVSDA--------GQLSEQSVLTMEAGFGPRHLVFSPDG--QYAFLAGELSSQIASLKYDTQTGAFT  224 (347)
T ss_dssp             EEEETTTTEEEEEEECTT--------SCEEEEEEEECCTTCCEEEEEECTTS--SEEEEEETTTTEEEEEEEETTTTEEE
T ss_pred             EEEeCCCCEEEEEEECCC--------CcEEEeeeEEcCCCCCCceEEECCCC--CEEEEEeCCCCEEEEEEecCCCCceE
Confidence            666667889999999621        11111122222 22356789999998  644 4556788999999874  4432


Q ss_pred             --eeee-cC------cceeEEEECCCCCEEEE-EeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CC
Q 014475          213 --RNIV-FP------SVIDAIALDPAEHVFYA-GSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GD  281 (424)
Q Consensus       213 --~~~~-~~------~~i~~~~~~~~~~~l~~-~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~  281 (424)
                        ..+. .+      ..+..++|+|+|++|++ ...++.|.+|++....      ....+..+..+...+..++|+| ++
T Consensus       225 ~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g------~~~~~~~~~~~~~~~~~~~~spdg~  298 (347)
T 3hfq_A          225 QLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADG------HLTLIQQISTEGDFPRDFDLDPTEA  298 (347)
T ss_dssp             EEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGG------CEEEEEEEECSSSCCCEEEECTTSS
T ss_pred             EeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCC------cEEEeEEEecCCCCcCeEEECCCCC
Confidence              2222 12      45888999999998754 5568999999997421      0244556666667789999999 88


Q ss_pred             EEEEeCC-CCcEEEE--eCCCCcEEE
Q 014475          282 LLISGSE-DGMVRVW--DPITHNIVR  304 (424)
Q Consensus       282 ~l~t~~~-dg~i~iw--d~~~~~~~~  304 (424)
                      +|++++. ++.|.+|  |..+++...
T Consensus       299 ~l~v~~~~~~~v~v~~~d~~tg~l~~  324 (347)
T 3hfq_A          299 FVVVVNQNTDNATLYARDLTSGKLSL  324 (347)
T ss_dssp             EEEEEETTTTEEEEEEECTTTCCEEE
T ss_pred             EEEEEEcCCCcEEEEEEeCCCCeEEe
Confidence            7777765 5899999  666676553

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.92  E-value=2.2e-23  Score=187.25  Aligned_cols=273  Identities=10%  Similarity=0.021  Sum_probs=189.8

Q ss_pred             eecCCCccccCCCCceeEEEEECCCCceeeeecCCC--CeeEEEECCCCCEEE-EecCCCcEEEEEccCcceeeeeccc-
Q 014475           46 FLASSQLREQPSASSGSILYWSWSKPQVEVKSLPAE--PIKPIAANSHGTYIA-GGGQSGDIYMWEVASGRLLKKWHAH-  121 (424)
Q Consensus        46 ~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~~~~~~--~v~~~~~s~~~~~l~-~~~~dg~v~iwd~~~~~~~~~~~~~-  121 (424)
                      +.++++++++++.+ +.|.+||..+++.........  .+..++|+|++++++ ++..++.|.+||+.+++.+..+..+ 
T Consensus         7 ~~~~~~~~v~~~~~-~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~   85 (349)
T 1jmx_B            7 LKAGHEYMIVTNYP-NNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSS   85 (349)
T ss_dssp             CCTTCEEEEEEETT-TEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCC
T ss_pred             ccCCCEEEEEeCCC-CeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEccc
Confidence            77888888888877 999999999887654444334  688999999998654 5567899999999999887766532 


Q ss_pred             -----cCCeEEEEEccCCcEEEEeeCC------------CcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEE
Q 014475          122 -----YRAVTCLVFSEDGSFLISGSED------------GCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIG  184 (424)
Q Consensus       122 -----~~~i~~~~~~~~~~~l~s~~~d------------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  184 (424)
                           ...+..++|+|+++++++++.+            +.|.+||+.++..        ...+.... +...+.+++|+
T Consensus        86 ~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~--------~~~~~~~~-~~~~~~~~~~s  156 (349)
T 1jmx_B           86 VPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLE--------AKPVRTFP-MPRQVYLMRAA  156 (349)
T ss_dssp             STTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGG--------BCCSEEEE-CCSSCCCEEEC
T ss_pred             ccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccc--------cceeeecc-CCCcccceeEC
Confidence                 2347889999999999998865            8999999976321        11112222 33468889999


Q ss_pred             EcCceeEEEEEeCCCcEEEEecCCCceeeeeecCc-------------------------ceeEEEECCCCCEEEEEeCC
Q 014475          185 YGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPS-------------------------VIDAIALDPAEHVFYAGSRD  239 (424)
Q Consensus       185 ~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~-------------------------~i~~~~~~~~~~~l~~~~~d  239 (424)
                      |++  + +++++  +.|.+||+.+++....+....                         ....+++++++.........
T Consensus       157 ~dg--~-l~~~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  231 (349)
T 1jmx_B          157 DDG--S-LYVAG--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADL  231 (349)
T ss_dssp             TTS--C-EEEES--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEE
T ss_pred             CCC--c-EEEcc--CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCcccccc
Confidence            998  6 55544  349999999998877665332                         33456666544211000000


Q ss_pred             -CcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC--CCEEEEeCCCCcEEEEeCCCCcEEEEEeccCCCeeEE
Q 014475          240 -GSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST--GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNI  316 (424)
Q Consensus       240 -g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l  316 (424)
                       ..+..++..++.        ........+...+..++++|  +++++++  ++.|.+||+.+++.+..+.. ...+.++
T Consensus       232 ~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~-~~~~~~~  300 (349)
T 1jmx_B          232 LYGYLSVDLKTGK--------THTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANL-DHTYYCV  300 (349)
T ss_dssp             EEEEEEEETTTCC--------EEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEEC-SSCCCEE
T ss_pred             ceeEEEEeccCCc--------EEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEcC-CCCccce
Confidence             111224444432        11112223556788899998  6677777  88999999999998888874 3457899


Q ss_pred             EEEecCceeeeccCCCceeeccCCCCCC
Q 014475          317 LVVRRPLYLNLGSFSNPHTSSRRHGSQL  344 (424)
Q Consensus       317 ~~s~~~~~l~~~~~d~~i~iw~~~~~~~  344 (424)
                      +|+|++++|++++.++.|.+||..+.+.
T Consensus       301 ~~s~dg~~l~~~~~~~~v~v~d~~~~~~  328 (349)
T 1jmx_B          301 AFDKKGDKLYLGGTFNDLAVFNPDTLEK  328 (349)
T ss_dssp             EECSSSSCEEEESBSSEEEEEETTTTEE
T ss_pred             EECCCCCEEEEecCCCeEEEEeccccce
Confidence            9999999998888899999999987653

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.92  E-value=5.2e-23  Score=202.64  Aligned_cols=276  Identities=14%  Similarity=0.111  Sum_probs=189.4

Q ss_pred             CCceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCC-----Cceeeeec-CCCC---
Q 014475           12 DTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSK-----PQVEVKSL-PAEP---   82 (424)
Q Consensus        12 dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~-----~~~~~~~~-~~~~---   82 (424)
                      ++.|++||+.+++..... .+.   ..+..++  |+|+|+.++++ .+ +.|.+|++.+     ++...... +...   
T Consensus       100 ~~~i~~~d~~~~~~~~l~-~~~---~~~~~~~--~SpdG~~la~~-~~-~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~  171 (706)
T 2z3z_A          100 QGGLVGFDMLARKVTYLF-DTN---EETASLD--FSPVGDRVAYV-RN-HNLYIARGGKLGEGMSRAIAVTIDGTETLVY  171 (706)
T ss_dssp             TTEEEEEETTTTEEEEEE-CCT---TCCTTCE--ECTTSSEEEEE-ET-TEEEEEECBCTTSCCCCCEESCSCCBTTEEE
T ss_pred             CCEEEEEECCCCceEEcc-CCc---ccccCCc--CCCCCCEEEEE-EC-CeEEEEecCcccccCCCcEEeccCCCCCeEc
Confidence            589999999988765433 333   2344455  99999999985 44 8999999987     65543222 2222   


Q ss_pred             -----------eeEEEECCCCCEEEEec---------------------------------CCCcEEEEEccCcceeeee
Q 014475           83 -----------IKPIAANSHGTYIAGGG---------------------------------QSGDIYMWEVASGRLLKKW  118 (424)
Q Consensus        83 -----------v~~~~~s~~~~~l~~~~---------------------------------~dg~v~iwd~~~~~~~~~~  118 (424)
                                 +.+++|||||++|++++                                 .+..|++||+.+++.....
T Consensus       172 g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~  251 (706)
T 2z3z_A          172 GQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQ  251 (706)
T ss_dssp             SSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECC
T ss_pred             ccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeec
Confidence                       58999999999999987                                 3467999999988765443


Q ss_pred             --ccccCCeEEEEEccCCcEEEEeeCCC-----cEEEEeCCcccchhcccccccceEEee--cCCcCceeEEEEEE--cC
Q 014475          119 --HAHYRAVTCLVFSEDGSFLISGSEDG-----CVRIWSLLTVFEECESQRASHLYLHSF--TGHTLRITDIVIGY--GG  187 (424)
Q Consensus       119 --~~~~~~i~~~~~~~~~~~l~s~~~dg-----~i~iwd~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~~~~~~--~~  187 (424)
                        ..|...+.+++|+||++.|++++.++     .|++||+.++..        ...+...  ......+.++.|+|  ++
T Consensus       252 ~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~--------~~~~~~~~~~~~~~~~~~~~~sp~~dg  323 (706)
T 2z3z_A          252 TGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRF--------VRTLFVETDKHYVEPLHPLTFLPGSNN  323 (706)
T ss_dssp             CCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCE--------EEEEEEEECSSCCCCCSCCEECTTCSS
T ss_pred             cCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCce--------eeEEEEccCCCeECccCCceeecCCCC
Confidence              24667799999999999999988775     899999976311        1111110  11112346789999  87


Q ss_pred             ceeEEEEEeCCCcEEEEecC-CCceeeeee-cCcceeE-EEECCCCCEEEEEeCC-C----cEEEEEcCCCCCCCCCcCc
Q 014475          188 VSATIVSASEDRTCKVWSLL-KGRLLRNIV-FPSVIDA-IALDPAEHVFYAGSRD-G----SIYIAALNAESPSTSSYGM  259 (424)
Q Consensus       188 ~~~~l~~~~~d~~v~iwd~~-~~~~~~~~~-~~~~i~~-~~~~~~~~~l~~~~~d-g----~i~i~d~~~~~~~~~~~~~  259 (424)
                        +++++++.++.+++|++. +++.+..+. +...+.. ++|+|+++.|+.++.+ +    .|+.||..++.        
T Consensus       324 --~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~--------  393 (706)
T 2z3z_A          324 --QFIWQSRRDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGK--------  393 (706)
T ss_dssp             --EEEEEECTTSSCEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCC--------
T ss_pred             --EEEEEEccCCccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCC--------
Confidence              789999999999999886 566566555 4555666 7999999988766544 3    56666665542        


Q ss_pred             eeeeeecccCcCeEEEEecC-CCEEEEeCCC----CcEEEEeCCCCcEEEEEeccCCCeeEEEE
Q 014475          260 HIIGSLSDHSKAVTCLAYST-GDLLISGSED----GMVRVWDPITHNIVRMFRLAKGPVNNILV  318 (424)
Q Consensus       260 ~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~d----g~i~iwd~~~~~~~~~~~~~~~~v~~l~~  318 (424)
                        ...+ .|...+.+++|+| +++++....+    +.|++||+.+++ ...+. +..++....+
T Consensus       394 --~~~l-~~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~~~~-~~~~~-~~~~~~~~~~  452 (706)
T 2z3z_A          394 --TKDL-TPESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIGKGS-HTLLE-AKNPDTGYAM  452 (706)
T ss_dssp             --CEES-CCSSSEEEEEECTTSSEEEEEEECSSCSCEEEEEESSSCE-EEEEE-CC------CC
T ss_pred             --ceec-cCCCceEEEEECCCCCEEEEEecCCCCCcEEEEEECCCCe-Eeecc-ccchhhhcCC
Confidence              1222 2567789999999 8877766433    569999998887 43333 3344444434

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.92  E-value=2.7e-22  Score=180.54  Aligned_cols=249  Identities=12%  Similarity=0.093  Sum_probs=190.5

Q ss_pred             CCceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCceeeeecC-CC---------
Q 014475           12 DTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSLP-AE---------   81 (424)
Q Consensus        12 dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~~~~-~~---------   81 (424)
                      ++.|.+||..+++.+..+....    ....++  ++|+++.++++...++.|.+||..+++....... ..         
T Consensus        68 ~~~v~~~d~~~~~~~~~~~~~~----~~~~~~--~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~  141 (353)
T 3vgz_A           68 GGVVYRLDPVTLEVTQAIHNDL----KPFGAT--INNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPL  141 (353)
T ss_dssp             SEEEEEECTTTCCEEEEEEESS----CCCSEE--EETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCC
T ss_pred             CccEEEEcCCCCeEEEEEecCC----CcceEE--ECCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCC
Confidence            6789999999999988886532    234445  9999997776655559999999998876543322 11         


Q ss_pred             CeeEEEECCCCCEEEEec--CCCcEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhc
Q 014475           82 PIKPIAANSHGTYIAGGG--QSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECE  159 (424)
Q Consensus        82 ~v~~~~~s~~~~~l~~~~--~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~  159 (424)
                      .+.+++|+|+++++++++  .++.|.+||..+++.+..+..+...+.++.|+|+++++++++.++.|.+||+.++.    
T Consensus       142 ~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~----  217 (353)
T 3vgz_A          142 QPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNK----  217 (353)
T ss_dssp             EEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTE----
T ss_pred             CCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCe----
Confidence            278899999999887765  47889999999999888887666678899999999999999999999999996632    


Q ss_pred             ccccccceEEeec----CCcCceeEEEEEEcCceeEEEEEe-CCCcEEEEecCCCceeeeeecCcceeEEEECCCCCEEE
Q 014475          160 SQRASHLYLHSFT----GHTLRITDIVIGYGGVSATIVSAS-EDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFY  234 (424)
Q Consensus       160 ~~~~~~~~~~~~~----~~~~~i~~~~~~~~~~~~~l~~~~-~d~~v~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~  234 (424)
                             ....+.    ++...+..++|+|++  +.+++++ .++.|.+||+.+++.+..+....+ ..++|+|++++++
T Consensus       218 -------~~~~~~~~~~~~~~~~~~~~~s~dg--~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~~s~dg~~l~  287 (353)
T 3vgz_A          218 -------ILSRKKLLDDGKEHFFINISLDTAR--QRAFITDSKAAEVLVVDTRNGNILAKVAAPES-LAVLFNPARNEAY  287 (353)
T ss_dssp             -------EEEEEECCCSSSCCCEEEEEEETTT--TEEEEEESSSSEEEEEETTTCCEEEEEECSSC-CCEEEETTTTEEE
T ss_pred             -------EEEEEEcCCCCCCcccceEEECCCC--CEEEEEeCCCCEEEEEECCCCcEEEEEEcCCC-ceEEECCCCCEEE
Confidence                   222222    255667889999998  5555544 559999999999998888875543 6799999999776


Q ss_pred             EEe-CCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCCC
Q 014475          235 AGS-RDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDG  290 (424)
Q Consensus       235 ~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg  290 (424)
                      ++. .++.|.+||..+.         +.+..+.. ...+.+++|+| +++++++..++
T Consensus       288 v~~~~~~~v~~~d~~~~---------~~~~~~~~-~~~~~~~~~s~dg~~l~v~~~~~  335 (353)
T 3vgz_A          288 VTHRQAGKVSVIDAKSY---------KVVKTFDT-PTHPNSLALSADGKTLYVSVKQK  335 (353)
T ss_dssp             EEETTTTEEEEEETTTT---------EEEEEEEC-CSEEEEEEECTTSCEEEEEEECC
T ss_pred             EEECCCCeEEEEECCCC---------eEEEEEec-CCCCCeEEEcCCCCEEEEEEccc
Confidence            665 6899999999876         44444443 34678999999 88666665553

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.92  E-value=1.3e-23  Score=207.35  Aligned_cols=319  Identities=12%  Similarity=0.031  Sum_probs=211.6

Q ss_pred             eecCCCCCceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCCC--------ceeEEEEECCCCceeeee
Q 014475            6 ASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSAS--------SGSILYWSWSKPQVEVKS   77 (424)
Q Consensus         6 at~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~--------~g~i~vwd~~~~~~~~~~   77 (424)
                      +..+ .|++|++||+.+++....+..+......+..++  |+|||++|++++..        ++.|++||+.+++.....
T Consensus        30 ~~~~-~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~--~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~  106 (719)
T 1z68_A           30 LHQS-ADNNIVLYNIETGQSYTILSNRTMKSVNASNYG--LSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGN  106 (719)
T ss_dssp             EEEC-TTSCEEEEESSSCCEEEEECHHHHHTTTCSEEE--ECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSS
T ss_pred             EEEc-CCCCEEEEEcCCCcEEEEEccccccccceeeEE--ECCCCCeEEEEecCceeEEeecceEEEEEECCCCccccce
Confidence            3344 589999999999988766654321112367777  99999999988751        389999999988762111


Q ss_pred             cCCCCeeEEEECCCCCEEEEecCCCcEEEEEccCcceeeee-ccccCCe-----------------EEEEEccCCcEEEE
Q 014475           78 LPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKW-HAHYRAV-----------------TCLVFSEDGSFLIS  139 (424)
Q Consensus        78 ~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~-~~~~~~i-----------------~~~~~~~~~~~l~s  139 (424)
                      .....+..++|||||+.||.+. ++.|++|++.+++..... .++...|                 .++.|+|||++|++
T Consensus       107 ~l~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~  185 (719)
T 1z68_A          107 ELPRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAY  185 (719)
T ss_dssp             CCCSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEE
T ss_pred             ecCcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEE
Confidence            2236789999999999999985 789999999888765433 2332222                 48999999999999


Q ss_pred             eeCCC----------------------------------cEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEE
Q 014475          140 GSEDG----------------------------------CVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGY  185 (424)
Q Consensus       140 ~~~dg----------------------------------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  185 (424)
                      ++.|.                                  .|++||+.++......   .......+.+|...+..++|+|
T Consensus       186 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~Sp  262 (719)
T 1z68_A          186 AEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQ---EVPVPAMIASSDYYFSWLTWVT  262 (719)
T ss_dssp             EEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCE---ECCCCHHHHTSCEEEEEEEESS
T ss_pred             EEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCcccee---EccCCccCCCCcceEEEeEEeC
Confidence            87652                                  7889998764321000   0000012346888899999999


Q ss_pred             cCceeEEEEEeCC----CcEEEEe----cCCCceeeee-----ecCccee-----EEEECCCCCEEEE--EeCCCc--EE
Q 014475          186 GGVSATIVSASED----RTCKVWS----LLKGRLLRNI-----VFPSVID-----AIALDPAEHVFYA--GSRDGS--IY  243 (424)
Q Consensus       186 ~~~~~~l~~~~~d----~~v~iwd----~~~~~~~~~~-----~~~~~i~-----~~~~~~~~~~l~~--~~~dg~--i~  243 (424)
                      ++  ..+++....    ..|.+||    +.+++....+     .+...+.     .+.|+|+|+.++.  ...+|.  |+
T Consensus       263 D~--~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~  340 (719)
T 1z68_A          263 DE--RVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIH  340 (719)
T ss_dssp             SS--EEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEE
T ss_pred             CC--eEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEE
Confidence            96  777764433    2488899    8777765554     2445555     7899999996554  445564  55


Q ss_pred             EEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecCCCEE-EEeCC----CCcEEEEeCCC--Cc-EEEEEec----cCC
Q 014475          244 IAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTGDLL-ISGSE----DGMVRVWDPIT--HN-IVRMFRL----AKG  311 (424)
Q Consensus       244 i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l-~t~~~----dg~i~iwd~~~--~~-~~~~~~~----~~~  311 (424)
                      +||+..+.          ...+..+...+..+.+.+++.| +++..    ++..++|.+..  +. ....+..    |..
T Consensus       341 ~~~~~~~~----------~~~lt~~~~~v~~~~~~d~~~i~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~l~~~~~~~~~  410 (719)
T 1z68_A          341 YIKDTVEN----------AIQITSGKWEAINIFRVTQDSLFYSSNEFEEYPGRRNIYRISIGSYPPSKKCVTCHLRKERC  410 (719)
T ss_dssp             EESSCSTT----------CEECSCSSSCEEEEEEECSSEEEEEESCGGGCTTCBEEEEEECSSSSCCEEESSTTTTTTTB
T ss_pred             EEECCCCc----------eEecccCceEEEEEEEEeCCEEEEEEecCCCCCceEEEEEEeCCCCCCCceeccCccCCCCC
Confidence            66665532          2234445555666554474444 44444    48889998754  32 1233332    556


Q ss_pred             CeeEEEEEecCceeee-ccCC--CceeeccCCCCC
Q 014475          312 PVNNILVVRRPLYLNL-GSFS--NPHTSSRRHGSQ  343 (424)
Q Consensus       312 ~v~~l~~s~~~~~l~~-~~~d--~~i~iw~~~~~~  343 (424)
                      .+..+.|+|++++++. ++.+  ..+.+|++.+++
T Consensus       411 ~~~~~~~s~dg~~l~~~~s~~~~p~~~l~d~~~g~  445 (719)
T 1z68_A          411 QYYTASFSDYAKYYALVCYGPGIPISTLHDGRTDQ  445 (719)
T ss_dssp             CBEEEEECGGGSSEEEEECCBSSCEEEEECSSSCC
T ss_pred             ceEEEEECCCCCEEEEEcCCCCCCeEEEEECCCCC
Confidence            7889999999988764 3333  357888886654

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.91  E-value=2.7e-23  Score=200.01  Aligned_cols=268  Identities=12%  Similarity=0.045  Sum_probs=196.5

Q ss_pred             CceEEecceeecCCCccccCCCCceeEEEEECCCCceeeeecCC-CCeeEEEECCCCCEEEEecC---CCcEEEEEccC-
Q 014475           37 HGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSLPA-EPIKPIAANSHGTYIAGGGQ---SGDIYMWEVAS-  111 (424)
Q Consensus        37 ~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~~~~---dg~v~iwd~~~-  111 (424)
                      ..+.+++  |+|||+.||+++..+|++.||++++++......+. ..+..++|+|| +++++++.   +....+|.+.. 
T Consensus        22 ~~~~~~~--~~~DG~~la~~s~~~g~~~lw~~~~g~~~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~   98 (582)
T 3o4h_A           22 VEKYSLQ--GVVDGDKLLVVGFSEGSVNAYLYDGGETVKLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTS   98 (582)
T ss_dssp             SCEEEEE--EEETTTEEEEEEEETTEEEEEEEETTEEEECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETT
T ss_pred             cchheee--cCCCCCeEEEEEccCCceeEEEEcCCCcEeeecccccccccccCCCC-eEEEEeccCCCCcceEEEEEecc
Confidence            3578888  99999999998874499999999777665555555 58999999999 77776654   45566665543 


Q ss_pred             --cceeeeeccccCCeEEEEEccCCcE-EEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCc
Q 014475          112 --GRLLKKWHAHYRAVTCLVFSEDGSF-LISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGV  188 (424)
Q Consensus       112 --~~~~~~~~~~~~~i~~~~~~~~~~~-l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  188 (424)
                        +... .+..+ ..+...+|+|+++. +++.+.++.+.+||+.++.           . ..+..+..  .+++|+|++ 
T Consensus        99 ~~g~~~-~l~~~-~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~-----------~-~~l~~~~~--~~~~~spDG-  161 (582)
T 3o4h_A           99 RPGEEQ-RLEAV-KPMRILSGVDTGEAVVFTGATEDRVALYALDGGG-----------L-RELARLPG--FGFVSDIRG-  161 (582)
T ss_dssp             STTCCE-ECTTS-CSBEEEEEEECSSCEEEEEECSSCEEEEEEETTE-----------E-EEEEEESS--CEEEEEEET-
T ss_pred             CCCccc-cccCC-CCceeeeeCCCCCeEEEEecCCCCceEEEccCCc-----------E-EEeecCCC--ceEEECCCC-
Confidence              2222 33322 23446688887753 3333444556699986531           1 11222222  788999999 


Q ss_pred             eeEEEEEeCC----CcEEEEecCCCceeeeeecCcceeEEEECCCCCEEEEEeCCC--cEEEEEcCCCCCCCCCcCceee
Q 014475          189 SATIVSASED----RTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDG--SIYIAALNAESPSTSSYGMHII  262 (424)
Q Consensus       189 ~~~l~~~~~d----~~v~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~  262 (424)
                       +.+++++.+    +.|++||+.+++......+...+..++|+|||+.|+++..++  .|++||+.++.         ..
T Consensus       162 -~~la~~~~~~~~~~~i~~~d~~~g~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~---------~~  231 (582)
T 3o4h_A          162 -DLIAGLGFFGGGRVSLFTSNLSSGGLRVFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGS---------VE  231 (582)
T ss_dssp             -TEEEEEEEEETTEEEEEEEETTTCCCEEECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCC---------EE
T ss_pred             -CEEEEEEEcCCCCeEEEEEcCCCCCceEeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCc---------EE
Confidence             888877776    789999999888765545778899999999999999888888  89999998763         22


Q ss_pred             eeecccCcCeEEEE--------ecC-CCEEEEeCCCCcEEEEeCCCCcEEEEEeccCCCeeEEEEEecCceeeeccCCCc
Q 014475          263 GSLSDHSKAVTCLA--------YST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNP  333 (424)
Q Consensus       263 ~~~~~~~~~i~~~~--------~~~-~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~d~~  333 (424)
                       .+..|...+..+.        |+| +.++++++.|+.+++|++  ++...   .+.+.+.+++|+ +++++++++.+..
T Consensus       232 -~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~~~~---~~~~~v~~~~~s-dg~~l~~~s~~~~  304 (582)
T 3o4h_A          232 -DLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID--GERVE---APQGNHGRVVLW-RGKLVTSHTSLST  304 (582)
T ss_dssp             -ECCCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET--TEEEC---CCSSEEEEEEEE-TTEEEEEEEETTE
T ss_pred             -EccCCCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE--CCeec---cCCCceEEEEec-CCEEEEEEcCCCC
Confidence             5556666666666        999 888899999999999999  66554   345778999999 9999988887754


Q ss_pred             ---eeeccCCC
Q 014475          334 ---HTSSRRHG  341 (424)
Q Consensus       334 ---i~iw~~~~  341 (424)
                         +.+|+..+
T Consensus       305 p~~l~~~d~~~  315 (582)
T 3o4h_A          305 PPRIVSLPSGE  315 (582)
T ss_dssp             EEEEEEETTCC
T ss_pred             CCeEEEEcCCC
Confidence               67777654

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.91  E-value=1.1e-22  Score=187.53  Aligned_cols=262  Identities=13%  Similarity=0.101  Sum_probs=177.7

Q ss_pred             eeEEEEECCCCceeeeecCCCCeeEEEECCCCCEEEEecCCCcEEEEEccCcce----------eee-----eccccCCe
Q 014475           61 GSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRL----------LKK-----WHAHYRAV  125 (424)
Q Consensus        61 g~i~vwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~----------~~~-----~~~~~~~i  125 (424)
                      +.+++|+....      .+...++.+++++++.++++++.++ +++|+......          +..     ...+...|
T Consensus        23 ~~vri~~~~~~------~~~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v   95 (434)
T 2oit_A           23 KKVRIFDSPEE------LPKERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPI   95 (434)
T ss_dssp             CEEECSCCCSS------CCCSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCE
T ss_pred             eeEEecCCccc------cCCCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcc
Confidence            46777764311      2345689999999999999999887 99987642111          110     11245679


Q ss_pred             EEEEEccCCcEEE----EeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcE
Q 014475          126 TCLVFSEDGSFLI----SGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTC  201 (424)
Q Consensus       126 ~~~~~~~~~~~l~----s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v  201 (424)
                      .+++|+|++++|+    +++.|+.|++||+++.................+.+|...|.+++|+|+.. .+|++++.||+|
T Consensus        96 ~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~-~~las~s~Dg~v  174 (434)
T 2oit_A           96 HHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVP-SMVAVCLADGSI  174 (434)
T ss_dssp             EEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCT-TEEEEEETTSCE
T ss_pred             cEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCC-CEEEEEECCCeE
Confidence            9999999999999    78899999999996531100000011112456678999999999999832 799999999999


Q ss_pred             EEEecCCCceeeeee-cCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeec-------ccCcCeE
Q 014475          202 KVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLS-------DHSKAVT  273 (424)
Q Consensus       202 ~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~-------~~~~~i~  273 (424)
                      ++||++++....... |...+.+++|+|+|++|++|+.||.|++||.+..          ....+.       .|...|.
T Consensus       175 ~iwD~~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~~~----------~~~~~~~~~~~~~~~~~~v~  244 (434)
T 2oit_A          175 AVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPTLQ----------EKKVIPCPPFYESDHPVRVL  244 (434)
T ss_dssp             EEEEESSSEEEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTTCC----------EEEEECCCTTCCTTSCEEEE
T ss_pred             EEEEcCCCcceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccCCc----------ccccccCCcccCCCCceeEE
Confidence            999999886654443 6789999999999999999999999999999832          111221       2345899


Q ss_pred             EEEecC-CCEEEEe-CCCC------cEEEEeCCCCc-----EEEEEe-------ccCCCeeEEEEEecCceeee-ccCCC
Q 014475          274 CLAYST-GDLLISG-SEDG------MVRVWDPITHN-----IVRMFR-------LAKGPVNNILVVRRPLYLNL-GSFSN  332 (424)
Q Consensus       274 ~~~~~~-~~~l~t~-~~dg------~i~iwd~~~~~-----~~~~~~-------~~~~~v~~l~~s~~~~~l~~-~~~d~  332 (424)
                      +++|++ +.++++. ..||      .+++|+++..+     ....+.       ....+-..+..-++.+++++ .+..+
T Consensus       245 ~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~dw~l~~v~s~~s~  324 (434)
T 2oit_A          245 DVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCTERQHHYYLSYIEEWDLVLAASAAST  324 (434)
T ss_dssp             EEEEEETTEEEEEEEETTCCSSSCCEEEEEECCCTTTCCCCEEEECCCSSCCCCSSSCCCEEEEEEGGGTEEEEEETTCS
T ss_pred             EEEEecCceEEEEEccCCCccCCCCceEEEEeccCCCCCCcceEecccCCCCCCCCcCcceeeehhccCCEEEEecCCCC
Confidence            999999 5555432 2333      38999998652     112211       11122223334477666654 44555


Q ss_pred             ceeeccCC
Q 014475          333 PHTSSRRH  340 (424)
Q Consensus       333 ~i~iw~~~  340 (424)
                      .|-+....
T Consensus       325 dv~vl~~~  332 (434)
T 2oit_A          325 EVSILARQ  332 (434)
T ss_dssp             BCEEEEEC
T ss_pred             ceeEEEec
Confidence            56666644

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.91  E-value=1.9e-21  Score=174.55  Aligned_cols=267  Identities=12%  Similarity=0.075  Sum_probs=184.8

Q ss_pred             EEEeecCCCCCceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCceeeeecC---
Q 014475            3 LLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSLP---   79 (424)
Q Consensus         3 ~~lat~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~~~~---   79 (424)
                      .++++++ .+++|.+||+.+++.+..+.....  ..+..++  |+|+++.+++++..++.|.+||..+++.......   
T Consensus        12 ~~~v~~~-~~~~v~~~d~~~~~~~~~~~~~~~--~~~~~~~--~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~   86 (349)
T 1jmx_B           12 EYMIVTN-YPNNLHVVDVASDTVYKSCVMPDK--FGPGTAM--MAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSV   86 (349)
T ss_dssp             EEEEEEE-TTTEEEEEETTTTEEEEEEECSSC--CSSCEEE--ECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCS
T ss_pred             EEEEEeC-CCCeEEEEECCCCcEEEEEecCCC--CCCceeE--ECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEcccc
Confidence            4677888 899999999999999888865431  1345566  9999987766554449999999998776544332   


Q ss_pred             ----CCCeeEEEECCCCCEEEEecCC------------CcEEEEEccCcceee---eeccccCCeEEEEEccCCcEEEEe
Q 014475           80 ----AEPIKPIAANSHGTYIAGGGQS------------GDIYMWEVASGRLLK---KWHAHYRAVTCLVFSEDGSFLISG  140 (424)
Q Consensus        80 ----~~~v~~~~~s~~~~~l~~~~~d------------g~v~iwd~~~~~~~~---~~~~~~~~i~~~~~~~~~~~l~s~  140 (424)
                          ...+..++|+|+|+++++++.+            +.|.+||+.+++...   .+. +...+.+++|+|+++ ++++
T Consensus        87 ~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~s~dg~-l~~~  164 (349)
T 1jmx_B           87 PGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFP-MPRQVYLMRAADDGS-LYVA  164 (349)
T ss_dssp             TTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEE-CCSSCCCEEECTTSC-EEEE
T ss_pred             cccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeecc-CCCcccceeECCCCc-EEEc
Confidence                2237899999999999998865            899999998865433   333 334688999999999 5555


Q ss_pred             eCCCcEEEEeCCcccchhcccccccceEEeecCCc---------------------C---ceeEEEEEEcCce-------
Q 014475          141 SEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHT---------------------L---RITDIVIGYGGVS-------  189 (424)
Q Consensus       141 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~---~i~~~~~~~~~~~-------  189 (424)
                      +.  .|.+||+.++...           ..+..+.                     .   ....+++.+++..       
T Consensus       165 ~~--~i~~~d~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  231 (349)
T 1jmx_B          165 GP--DIYKMDVKTGKYT-----------VALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADL  231 (349)
T ss_dssp             SS--SEEEECTTTCCEE-----------EEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEE
T ss_pred             cC--cEEEEeCCCCcee-----------ccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCcccccc
Confidence            43  4999999764321           1111110                     0   2233444433210       


Q ss_pred             --eEEEEEeCCCcEEEEecCCCceeeeeecCcceeEEEECC-CCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeec
Q 014475          190 --ATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDP-AEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLS  266 (424)
Q Consensus       190 --~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~  266 (424)
                        .++.....++.+++|++.        .....+..++++| ++++++++  ++.|.+||+.+.         +.+..+.
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~---------~~~~~~~  292 (349)
T 1jmx_B          232 LYGYLSVDLKTGKTHTQEFA--------DLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQR---------KLIKAAN  292 (349)
T ss_dssp             EEEEEEEETTTCCEEEEEEE--------ECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTT---------EEEEEEE
T ss_pred             ceeEEEEeccCCcEEecccc--------cCCCcceeeEecCCCCCEEEEE--cCeEEEEECccC---------eEEEEEc
Confidence              111122334445554442        1455788999999 99999988  889999999886         3344443


Q ss_pred             ccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCCCcEEEEEecc
Q 014475          267 DHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLA  309 (424)
Q Consensus       267 ~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~  309 (424)
                       ....+.+++|+| +++|++++.++.|++||+.+++.+..+..+
T Consensus       293 -~~~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~~~~~~~~~  335 (349)
T 1jmx_B          293 -LDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKLP  335 (349)
T ss_dssp             -CSSCCCEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEEECS
T ss_pred             -CCCCccceEECCCCCEEEEecCCCeEEEEeccccceeeeeecC
Confidence             234577899999 888888888999999999999999888755

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.90  E-value=5.9e-21  Score=172.43  Aligned_cols=291  Identities=11%  Similarity=0.146  Sum_probs=189.9

Q ss_pred             CCCceEEEeC--CCCceEEEeeCCCCCCCceEEecceeecCCCccccCCCC---ceeEEEEECCC--Cceeee---ecCC
Q 014475           11 ADTGIGCWDL--ESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSAS---SGSILYWSWSK--PQVEVK---SLPA   80 (424)
Q Consensus        11 ~dg~i~vwd~--~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~---~g~i~vwd~~~--~~~~~~---~~~~   80 (424)
                      .++.|.+|++  ++|+.......   +......++  |+|+|++|++++.+   ++.|.+|+++.  ++....   ..+.
T Consensus        25 ~~~~i~~~~~d~~~g~~~~~~~~---~~~~p~~l~--~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~   99 (361)
T 3scy_A           25 NSKGIYTFRFNEETGESLPLSDA---EVANPSYLI--PSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMG   99 (361)
T ss_dssp             SCCEEEEEEEETTTCCEEEEEEE---ECSCCCSEE--ECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSS
T ss_pred             CCCCEEEEEEeCCCCCEEEeecc---cCCCCceEE--ECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCC
Confidence            4678999976  55654433222   234445556  99999998888763   37999999875  333222   2245


Q ss_pred             CCeeEEEECCCCCEEEEec-CCCcEEEEEccCcceeeeec--------------cccCCeEEEEEccCCcEEEEee-CCC
Q 014475           81 EPIKPIAANSHGTYIAGGG-QSGDIYMWEVASGRLLKKWH--------------AHYRAVTCLVFSEDGSFLISGS-EDG  144 (424)
Q Consensus        81 ~~v~~~~~s~~~~~l~~~~-~dg~v~iwd~~~~~~~~~~~--------------~~~~~i~~~~~~~~~~~l~s~~-~dg  144 (424)
                      .....+++  ++++|++++ .++.|.+|++.....+..+.              .+...+.+++|+|+++++++++ .++
T Consensus       100 ~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~  177 (361)
T 3scy_A          100 ADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTD  177 (361)
T ss_dssp             SCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTT
T ss_pred             CCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCC
Confidence            56777888  777777665 57899999997543332211              1223468899999999766555 478


Q ss_pred             cEEEEeCCcccchhcccccc-cce----EEeecCCcCceeEEEEEEcCceeEEEEEe-CCCcEEEEecCCCcee--eeee
Q 014475          145 CVRIWSLLTVFEECESQRAS-HLY----LHSFTGHTLRITDIVIGYGGVSATIVSAS-EDRTCKVWSLLKGRLL--RNIV  216 (424)
Q Consensus       145 ~i~iwd~~~~~~~~~~~~~~-~~~----~~~~~~~~~~i~~~~~~~~~~~~~l~~~~-~d~~v~iwd~~~~~~~--~~~~  216 (424)
                      .|.+|++.........   . ...    ......+......++|+|++  +++++++ .++.|.+||+.+++..  ..+.
T Consensus       178 ~v~v~~~~~~~~~~~~---~~l~~~~~~~~~~~~~~~~~~~~~~spdg--~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~  252 (361)
T 3scy_A          178 QIHKFNINPNANADNK---EKFLTKGTPEAFKVAPGSGPRHLIFNSDG--KFAYLINEIGGTVIAFRYADGMLDEIQTVA  252 (361)
T ss_dssp             EEEEEEECTTCCTTTC---CCCEEEEEEEEEECCTTCCEEEEEECTTS--SEEEEEETTTCEEEEEEEETTEEEEEEEEE
T ss_pred             EEEEEEEcCCCCcccc---cceeecccccceecCCCCCCeEEEEcCCC--CEEEEEcCCCCeEEEEEecCCceEEeEEEe
Confidence            9999998642110000   0 000    11122344567889999998  6676666 6899999999877542  2222


Q ss_pred             ----cCcceeEEEECCCCCEEEEEeCC--CcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeC-C
Q 014475          217 ----FPSVIDAIALDPAEHVFYAGSRD--GSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGS-E  288 (424)
Q Consensus       217 ----~~~~i~~~~~~~~~~~l~~~~~d--g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~-~  288 (424)
                          +......++|+|++++|+++..+  +.|.+|+++.....     ...+..+.. ...+..++|+| +++|++++ .
T Consensus       253 ~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~-----~~~~~~~~~-g~~~~~~~~spdg~~l~~~~~~  326 (361)
T 3scy_A          253 ADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGT-----LTKVGYQLT-GIHPRNFIITPNGKYLLVACRD  326 (361)
T ss_dssp             SCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCC-----EEEEEEEEC-SSCCCEEEECTTSCEEEEEETT
T ss_pred             cCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCc-----EEEeeEecC-CCCCceEEECCCCCEEEEEECC
Confidence                12346799999999999777665  89999999732110     133444443 45788999999 88777776 6


Q ss_pred             CCcEEEE--eCCCCcEEEEE-eccCCCeeEEEEE
Q 014475          289 DGMVRVW--DPITHNIVRMF-RLAKGPVNNILVV  319 (424)
Q Consensus       289 dg~i~iw--d~~~~~~~~~~-~~~~~~v~~l~~s  319 (424)
                      ++.|.+|  |..+++..... ..+...+.++.|.
T Consensus       327 ~~~v~v~~~d~~~g~~~~~~~~~~~~~p~~v~~~  360 (361)
T 3scy_A          327 TNVIQIFERDQATGLLTDIKKDIKVDKPVCLKFV  360 (361)
T ss_dssp             TTEEEEEEECTTTCCEEECSCCEECSSEEEEEEE
T ss_pred             CCCEEEEEEECCCCcEeecceeeeCCCCeEEEEc
Confidence            7899995  55577765543 2344578888886

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.90  E-value=9.4e-23  Score=196.19  Aligned_cols=236  Identities=9%  Similarity=0.024  Sum_probs=179.2

Q ss_pred             CCCCeeEEEECCCCCEEEEecC-CCcEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEeeC---CCcEEEEeCCcc
Q 014475           79 PAEPIKPIAANSHGTYIAGGGQ-SGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSE---DGCVRIWSLLTV  154 (424)
Q Consensus        79 ~~~~v~~~~~s~~~~~l~~~~~-dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~---dg~i~iwd~~~~  154 (424)
                      ...+|.+++|+|||+.||.++. ||++.||++.+++..+....+...+..+.|+|| +.+++++.   +....+|.+...
T Consensus        20 ~~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~   98 (582)
T 3o4h_A           20 IAVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVKLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTS   98 (582)
T ss_dssp             HHSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEEECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETT
T ss_pred             hccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcEeeecccccccccccCCCC-eEEEEeccCCCCcceEEEEEecc
Confidence            3568999999999999999877 999999999766654443333368999999999 77777765   455666655320


Q ss_pred             cchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeeecCcceeEEEECCCCCEEE
Q 014475          155 FEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFY  234 (424)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~  234 (424)
                      ..      ...  . .+.... .....+|+|+++...+++++. +.+.+||+.+++......++.  .+++|+|+|++++
T Consensus        99 ~~------g~~--~-~l~~~~-~~~~~~~s~dg~~~~~~s~~~-~~~~l~d~~~g~~~~l~~~~~--~~~~~spDG~~la  165 (582)
T 3o4h_A           99 RP------GEE--Q-RLEAVK-PMRILSGVDTGEAVVFTGATE-DRVALYALDGGGLRELARLPG--FGFVSDIRGDLIA  165 (582)
T ss_dssp             ST------TCC--E-ECTTSC-SBEEEEEEECSSCEEEEEECS-SCEEEEEEETTEEEEEEEESS--CEEEEEEETTEEE
T ss_pred             CC------Ccc--c-cccCCC-CceeeeeCCCCCeEEEEecCC-CCceEEEccCCcEEEeecCCC--ceEEECCCCCEEE
Confidence            00      011  1 122222 234668999986445555544 455599999887666555444  8899999999999


Q ss_pred             EEeCC----CcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCCC--cEEEEeCCCCcEEEEEe
Q 014475          235 AGSRD----GSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDG--MVRVWDPITHNIVRMFR  307 (424)
Q Consensus       235 ~~~~d----g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg--~i~iwd~~~~~~~~~~~  307 (424)
                      .++.+    +.|++||+.++.          ...+..|...+..++|+| |+.|+++..++  .|++||+.+++.. .+.
T Consensus       166 ~~~~~~~~~~~i~~~d~~~g~----------~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~  234 (582)
T 3o4h_A          166 GLGFFGGGRVSLFTSNLSSGG----------LRVFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLE  234 (582)
T ss_dssp             EEEEEETTEEEEEEEETTTCC----------CEEECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECC
T ss_pred             EEEEcCCCCeEEEEEcCCCCC----------ceEeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-Ecc
Confidence            88776    789999998764          335667888899999999 99999888888  8999999999887 777


Q ss_pred             ccCCCeeEEE--------EEecCceeeeccCCCceeeccC
Q 014475          308 LAKGPVNNIL--------VVRRPLYLNLGSFSNPHTSSRR  339 (424)
Q Consensus       308 ~~~~~v~~l~--------~s~~~~~l~~~~~d~~i~iw~~  339 (424)
                      .|...+..++        |+|||..+++++.|+.+++|++
T Consensus       235 ~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~  274 (582)
T 3o4h_A          235 LPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID  274 (582)
T ss_dssp             CSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET
T ss_pred             CCCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE
Confidence            7877777777        9999988899999999999998

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.90  E-value=6.3e-22  Score=180.62  Aligned_cols=301  Identities=9%  Similarity=-0.074  Sum_probs=203.9

Q ss_pred             EEEeCCCCceEEEeeCCCCCCCc--eEEecceeecCCCccccCCCCce--eEEEEECCCCceeeeec-CCCCeeEEEECC
Q 014475           16 GCWDLESGAEQLRYKSCASPPHG--LACVGQRFLASSQLREQPSASSG--SILYWSWSKPQVEVKSL-PAEPIKPIAANS   90 (424)
Q Consensus        16 ~vwd~~~~~~~~~~~~~~~~~~~--v~~~~~~~~~~~~~l~~~~~~~g--~i~vwd~~~~~~~~~~~-~~~~v~~~~~s~   90 (424)
                      ..+|..+|..+..+..+......  +...+  |+|||+.|+.++..+|  .|.+||..+++...... +...+..+.|+|
T Consensus        13 ~~~~~~~g~~~~~lt~~~~~~~~~~~~~~~--~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~sp   90 (388)
T 3pe7_A           13 TYQDASTGAQVTRLTPPDVTCHRNYFYQKC--FTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSP   90 (388)
T ss_dssp             EEECTTTCCEEEECSCTTSCEECCCTTSCC--BCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECT
T ss_pred             EEecCCCCcceEEecCCcccccchhhcCcc--CCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcC
Confidence            45677888888887655432211  11145  9999999998887436  48888988877654433 444555788999


Q ss_pred             CCCEEEEecCCCcEEEEEccCcceeeeeccccCCeEEEE--EccCCcEEEEe----------------------eCCCcE
Q 014475           91 HGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLV--FSEDGSFLISG----------------------SEDGCV  146 (424)
Q Consensus        91 ~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~--~~~~~~~l~s~----------------------~~dg~i  146 (424)
                      ||+.|+.++.++.|++||+.+++....+..+...+....  ++|++++++..                      ..+..|
T Consensus        91 dg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  170 (388)
T 3pe7_A           91 DDDALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRL  170 (388)
T ss_dssp             TSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEE
T ss_pred             CCCEEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceE
Confidence            999999999889999999999987766665655554444  48899888742                      244679


Q ss_pred             EEEeCCcccchhcccccccceEEeecCCcCceeEEEEEE-cCceeEEEEEeCC------CcEEEEecCCCceeeeeecC-
Q 014475          147 RIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGY-GGVSATIVSASED------RTCKVWSLLKGRLLRNIVFP-  218 (424)
Q Consensus       147 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~l~~~~~d------~~v~iwd~~~~~~~~~~~~~-  218 (424)
                      .+||+.++.            ...+..+...+..+.|+| ++  +.|+....+      ..|.++|...++......+. 
T Consensus       171 ~~~d~~~g~------------~~~l~~~~~~~~~~~~sp~dg--~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~  236 (388)
T 3pe7_A          171 MRVDLKTGE------------STVILQENQWLGHPIYRPYDD--STVAFCHEGPHDLVDARMWLINEDGTNMRKVKTHAE  236 (388)
T ss_dssp             EEEETTTCC------------EEEEEEESSCEEEEEEETTEE--EEEEEEECSCTTTSSCSEEEEETTSCCCEESCCCCT
T ss_pred             EEEECCCCc------------eEEeecCCccccccEECCCCC--CEEEEEEecCCCCCcceEEEEeCCCCceEEeeeCCC
Confidence            999986631            223334566788999999 87  777766653      37888887766544333333 


Q ss_pred             -cceeEEEECCCCCEEEEEeC-CC----cEEEEEcCCCCCCCCCcCceeeeeecccCcC---eEEEEecC-CCEEEEe--
Q 014475          219 -SVIDAIALDPAEHVFYAGSR-DG----SIYIAALNAESPSTSSYGMHIIGSLSDHSKA---VTCLAYST-GDLLISG--  286 (424)
Q Consensus       219 -~~i~~~~~~~~~~~l~~~~~-dg----~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~---i~~~~~~~-~~~l~t~--  286 (424)
                       ..+....|+|+|+.|+..+. ++    .|++||+.++..       ..+..+.++...   .....|+| ++.|+..  
T Consensus       237 ~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~-------~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~  309 (388)
T 3pe7_A          237 GESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLEN-------RQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQ  309 (388)
T ss_dssp             TEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCE-------EEEEEECCEEEEEECTTSSEEEEEECCC-----
T ss_pred             CcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCce-------EEEEcCCCceeeeecCCCCeEccCCCcceeEee
Confidence             35778899999997765443 22    399999988641       223333321110   11236888 7766643  


Q ss_pred             -------CCCCcEEEEeCCCCcEEEEEeccCC-----------CeeEEEEEecCceeeecc-CCCceeeccCC
Q 014475          287 -------SEDGMVRVWDPITHNIVRMFRLAKG-----------PVNNILVVRRPLYLNLGS-FSNPHTSSRRH  340 (424)
Q Consensus       287 -------~~dg~i~iwd~~~~~~~~~~~~~~~-----------~v~~l~~s~~~~~l~~~~-~d~~i~iw~~~  340 (424)
                             ..+..|++||+.+++. ..+..+..           .+..++|+|||+.|+.++ .+|...+|.+.
T Consensus       310 ~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~~  381 (388)
T 3pe7_A          310 DDSGYKIENDPFLYVFNMKNGTQ-HRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLAT  381 (388)
T ss_dssp             -------CCCCEEEEEETTTTEE-EEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEE
T ss_pred             eccccccCCCCEEEEEeccCCce-EEeccccCcccccccccccCCCCccCCCCCCEEEEEecCCCceeEEEEE
Confidence                   4567899999998765 45555655           578899999999887655 57777788765

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.89  E-value=1.8e-20  Score=169.17  Aligned_cols=266  Identities=9%  Similarity=0.077  Sum_probs=180.2

Q ss_pred             eeEEEEECC--CCceeee-ecCCCCeeEEEECCCCCEEEEecCC----CcEEEEEccC--cce--eeeeccccCCeEEEE
Q 014475           61 GSILYWSWS--KPQVEVK-SLPAEPIKPIAANSHGTYIAGGGQS----GDIYMWEVAS--GRL--LKKWHAHYRAVTCLV  129 (424)
Q Consensus        61 g~i~vwd~~--~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~d----g~v~iwd~~~--~~~--~~~~~~~~~~i~~~~  129 (424)
                      +.|.+|.++  +++.... ..+...+..++|+|++++|++++.+    +.|.+|++..  ++.  +.....+......++
T Consensus        27 ~~i~~~~~d~~~g~~~~~~~~~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~  106 (361)
T 3scy_A           27 KGIYTFRFNEETGESLPLSDAEVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLT  106 (361)
T ss_dssp             CEEEEEEEETTTCCEEEEEEEECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEE
T ss_pred             CCEEEEEEeCCCCCEEEeecccCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEE
Confidence            789999774  4443322 2267788899999999999998875    7999999875  432  333344556677888


Q ss_pred             EccCCcEEEEee-CCCcEEEEeCCcccchhcccccccceEEee--------cCCcCceeEEEEEEcCceeEEEEE-eCCC
Q 014475          130 FSEDGSFLISGS-EDGCVRIWSLLTVFEECESQRASHLYLHSF--------TGHTLRITDIVIGYGGVSATIVSA-SEDR  199 (424)
Q Consensus       130 ~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~--------~~~~~~i~~~~~~~~~~~~~l~~~-~~d~  199 (424)
                      +  +++++++++ .++.|.+|++........     .......        ..+...+.+++|+|++  ++++++ ..++
T Consensus       107 ~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~-----~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg--~~l~~~~~~~~  177 (361)
T 3scy_A          107 T--NGKNIVTANYSGGSITVFPIGQDGALLP-----ASDVIEFKGSGPDKERQTMPHLHCVRITPDG--KYLLADDLGTD  177 (361)
T ss_dssp             E--CSSEEEEEETTTTEEEEEEBCTTSCBCS-----CSEEEECCCCCSCTTTCSSCCEEEEEECTTS--SEEEEEETTTT
T ss_pred             E--CCCEEEEEECCCCEEEEEEeCCCCcCcc-----cceeEEccCCCCCccccCCCcceEEEECCCC--CEEEEEeCCCC
Confidence            8  777777666 578999999964221100     0000011        1123345789999998  655544 4588


Q ss_pred             cEEEEecCCCc-------e-------eeeeecCcceeEEEECCCCCEEEEEe-CCCcEEEEEcCCCCCCCCCcCceeeee
Q 014475          200 TCKVWSLLKGR-------L-------LRNIVFPSVIDAIALDPAEHVFYAGS-RDGSIYIAALNAESPSTSSYGMHIIGS  264 (424)
Q Consensus       200 ~v~iwd~~~~~-------~-------~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~  264 (424)
                      .|.+|++....       .       .........+..++|+|+++++++++ .++.|.+|++.++....    ...+..
T Consensus       178 ~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~----~~~~~~  253 (361)
T 3scy_A          178 QIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDE----IQTVAA  253 (361)
T ss_dssp             EEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEE----EEEEES
T ss_pred             EEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEE----eEEEec
Confidence            99999987543       1       11222456678999999999888777 68999999998642100    011222


Q ss_pred             ecccCcCeEEEEecC-CCEEEEeCC--CCcEEEEeCC--CCc--EEEEEeccCCCeeEEEEEecCceeeecc-CCCceee
Q 014475          265 LSDHSKAVTCLAYST-GDLLISGSE--DGMVRVWDPI--THN--IVRMFRLAKGPVNNILVVRRPLYLNLGS-FSNPHTS  336 (424)
Q Consensus       265 ~~~~~~~i~~~~~~~-~~~l~t~~~--dg~i~iwd~~--~~~--~~~~~~~~~~~v~~l~~s~~~~~l~~~~-~d~~i~i  336 (424)
                      ...+...+..++|+| +++|+++..  ++.|.+|++.  +++  .+..+.. ...+..++|+|+|++|++++ .++.|.+
T Consensus       254 ~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~spdg~~l~~~~~~~~~v~v  332 (361)
T 3scy_A          254 DTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT-GIHPRNFIITPNGKYLLVACRDTNVIQI  332 (361)
T ss_dssp             CSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-SSCCCEEEECTTSCEEEEEETTTTEEEE
T ss_pred             CCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-CCCCceEEECCCCCEEEEEECCCCCEEE
Confidence            233445678999999 888866554  5899999985  454  4455554 55788999999999888876 6788999


Q ss_pred             ccCC
Q 014475          337 SRRH  340 (424)
Q Consensus       337 w~~~  340 (424)
                      |++.
T Consensus       333 ~~~d  336 (361)
T 3scy_A          333 FERD  336 (361)
T ss_dssp             EEEC
T ss_pred             EEEE
Confidence            7554

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.89  E-value=1.5e-21  Score=179.92  Aligned_cols=196  Identities=13%  Similarity=0.079  Sum_probs=152.6

Q ss_pred             ceEEecceeecCCCccccCCCCceeEEEEECCCC-----------ce-----eeeecCCCCeeEEEECCCCCEEE----E
Q 014475           38 GLACVGQRFLASSQLREQPSASSGSILYWSWSKP-----------QV-----EVKSLPAEPIKPIAANSHGTYIA----G   97 (424)
Q Consensus        38 ~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~-----------~~-----~~~~~~~~~v~~~~~s~~~~~l~----~   97 (424)
                      .+..++  +++++.++++++.+ + +++|+....           ..     .....+...|.+++|+|++++|+    +
T Consensus        38 ~~n~la--vs~~~~~l~~~~~d-g-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~s  113 (434)
T 2oit_A           38 RSSLLA--VSNKYGLVFAGGAS-G-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMS  113 (434)
T ss_dssp             CCBCEE--EETTTTEEEEEETT-E-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEE
T ss_pred             CccEEE--EecCCCEEEEECCC-E-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEec
Confidence            466777  99999999998886 6 888875311           00     01223456899999999999999    7


Q ss_pred             ecCCCcEEEEEccCc--------ce---eeeeccccCCeEEEEEccC-CcEEEEeeCCCcEEEEeCCcccchhccccccc
Q 014475           98 GGQSGDIYMWEVASG--------RL---LKKWHAHYRAVTCLVFSED-GSFLISGSEDGCVRIWSLLTVFEECESQRASH  165 (424)
Q Consensus        98 ~~~dg~v~iwd~~~~--------~~---~~~~~~~~~~i~~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~  165 (424)
                      |+.|+.|+|||++++        +.   +..+.+|...|.+++|+|+ +++|++++.||+|++||++++           
T Consensus       114 gs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~-----------  182 (434)
T 2oit_A          114 SEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTET-----------  182 (434)
T ss_dssp             TTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSS-----------
T ss_pred             cCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCC-----------
Confidence            889999999999765        21   3456679999999999997 889999999999999999652           


Q ss_pred             ceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeee-c-------CcceeEEEECCCCCEEEEE-
Q 014475          166 LYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-F-------PSVIDAIALDPAEHVFYAG-  236 (424)
Q Consensus       166 ~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~-~-------~~~i~~~~~~~~~~~l~~~-  236 (424)
                      .......+|...|.+++|+|++  ++|++|+.||.|++||++ ++....+. +       ...+.+++|++++.++++. 
T Consensus       183 ~~~~~~~~~~~~v~~v~wspdg--~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~  259 (434)
T 2oit_A          183 VKVCATLPSTVAVTSVCWSPKG--KQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYA  259 (434)
T ss_dssp             EEEEEEECGGGCEEEEEECTTS--SCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEE
T ss_pred             cceeeccCCCCceeEEEEcCCC--CEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEc
Confidence            2334456688999999999998  899999999999999998 55554443 1       2378999999988877653 


Q ss_pred             eCCC------cEEEEEcCCCC
Q 014475          237 SRDG------SIYIAALNAES  251 (424)
Q Consensus       237 ~~dg------~i~i~d~~~~~  251 (424)
                      ..+|      .+++|+++...
T Consensus       260 ~~dg~~~~~~~v~i~~l~~~~  280 (434)
T 2oit_A          260 AADGTLETSPDVVMALLPKKE  280 (434)
T ss_dssp             ETTCCSSSCCEEEEEECCCTT
T ss_pred             cCCCccCCCCceEEEEeccCC
Confidence            3443      38999998753

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.89  E-value=2.3e-22  Score=198.42  Aligned_cols=275  Identities=11%  Similarity=0.027  Sum_probs=190.2

Q ss_pred             eecCCCccccCCCCceeEEEEECCCCceeeeecCCC----CeeEEEECCCCCEEEEecC---------CCcEEEEEccCc
Q 014475           46 FLASSQLREQPSASSGSILYWSWSKPQVEVKSLPAE----PIKPIAANSHGTYIAGGGQ---------SGDIYMWEVASG  112 (424)
Q Consensus        46 ~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~~~~~~----~v~~~~~s~~~~~l~~~~~---------dg~v~iwd~~~~  112 (424)
                      |+|+|++++++ .+ +.|++||..+++......+..    .+.+++|||||++|++++.         ++.|++||+.++
T Consensus        23 ~s~dg~~~~~~-~d-~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g  100 (719)
T 1z68_A           23 WISGQEYLHQS-AD-NNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNG  100 (719)
T ss_dssp             ESSSSEEEEEC-TT-SCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTT
T ss_pred             ECCCCeEEEEc-CC-CCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCC
Confidence            99999766655 44 999999999887655443322    4899999999999998876         689999999988


Q ss_pred             cee--eeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCc---------eeEE
Q 014475          113 RLL--KKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLR---------ITDI  181 (424)
Q Consensus       113 ~~~--~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~---------i~~~  181 (424)
                      +.+  ..+   ...+..++|+|||+.|+.+. ++.|++||+.++............  ..+.++...         ..++
T Consensus       101 ~~~~~~~l---~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~--~v~~g~~~~v~~ee~~~~~~~~  174 (719)
T 1z68_A          101 EFVRGNEL---PRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGREN--KIFNGIPDWVYEEEMLATKYAL  174 (719)
T ss_dssp             EECCSSCC---CSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTT--TEEESSCCHHHHHHTTCSSCCE
T ss_pred             ccccceec---CcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcC--CeEcccccceeeeecccCcccE
Confidence            763  222   24688899999999999886 779999999764321100000000  011223222         2589


Q ss_pred             EEEEcCceeEEEEEeCCC----------------------------------cEEEEecCCCcee--eee-------ecC
Q 014475          182 VIGYGGVSATIVSASEDR----------------------------------TCKVWSLLKGRLL--RNI-------VFP  218 (424)
Q Consensus       182 ~~~~~~~~~~l~~~~~d~----------------------------------~v~iwd~~~~~~~--~~~-------~~~  218 (424)
                      +|+|++  +.|++++.|.                                  .|++||+.+++..  ..+       .+.
T Consensus       175 ~wSPDG--~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~  252 (719)
T 1z68_A          175 WWSPNG--KFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSD  252 (719)
T ss_dssp             EECTTS--SEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSC
T ss_pred             EECCCC--CEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCc
Confidence            999999  7888877552                                  7889999887753  111       155


Q ss_pred             cceeEEEECCCCCEEEEEeCCC----cEEEEE----cCCCCCCCCCcCceeeeee----cccCcCeE-----EEEecC-C
Q 014475          219 SVIDAIALDPAEHVFYAGSRDG----SIYIAA----LNAESPSTSSYGMHIIGSL----SDHSKAVT-----CLAYST-G  280 (424)
Q Consensus       219 ~~i~~~~~~~~~~~l~~~~~dg----~i~i~d----~~~~~~~~~~~~~~~~~~~----~~~~~~i~-----~~~~~~-~  280 (424)
                      ..+..++|+|+++++++....+    .|.+||    ..++.         .....    ..|...+.     .+.|+| +
T Consensus       253 ~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~---------~~~~~~~~~~~~~~~~~~~~~~~~~~spdg  323 (719)
T 1z68_A          253 YYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWD---------CPKTQEHIEESRTGWAGGFFVSTPVFSYDA  323 (719)
T ss_dssp             EEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEE---------CCGGGEEEEECSSSCSSSSSCCCCEECTTS
T ss_pred             ceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCc---------eEEEEecccccCCceEccccCCccEECCCC
Confidence            6789999999987777644332    488888    65542         22222    35666666     789999 7


Q ss_pred             CEEE--EeCCCC--cEEEEeCCCCcEEEEEeccCCCeeEEEEEecCceeeeccCC-----CceeeccCCC
Q 014475          281 DLLI--SGSEDG--MVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSFS-----NPHTSSRRHG  341 (424)
Q Consensus       281 ~~l~--t~~~dg--~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~d-----~~i~iw~~~~  341 (424)
                      +.++  +...+|  .|.+||+.+++ ...+..+...+..+.++ +++.|+..+.+     +..++|.+..
T Consensus       324 ~~l~~~~~~~~g~~~l~~~~~~~~~-~~~lt~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~  391 (719)
T 1z68_A          324 ISYYKIFSDKDGYKHIHYIKDTVEN-AIQITSGKWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRISI  391 (719)
T ss_dssp             SCEEEEEECTTSCEEEEEESSCSTT-CEECSCSSSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEEC
T ss_pred             CeEEEEEEccCCceEEEEEECCCCc-eEecccCceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEeC
Confidence            7544  344555  57778887776 45566566678888888 88777666554     8899998764

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.88  E-value=2.9e-20  Score=167.29  Aligned_cols=285  Identities=12%  Similarity=0.076  Sum_probs=202.1

Q ss_pred             CCCceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCC---------CceeEEEEECCCCceeeeec---
Q 014475           11 ADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSA---------SSGSILYWSWSKPQVEVKSL---   78 (424)
Q Consensus        11 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~---------~~g~i~vwd~~~~~~~~~~~---   78 (424)
                      .|+.|.+||..+++.+.++.....   .  .++  |+|++++++++..         .++.|.+||..+.+......   
T Consensus        29 ~d~~v~v~D~~t~~~~~~i~~g~~---p--~i~--~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~  101 (361)
T 2oiz_A           29 TESRVHVYDYTNGKFLGMVPTAFN---G--HVQ--VSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPP  101 (361)
T ss_dssp             GGCEEEEEETTTCCEEEEEECCEE---E--EEE--ECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECT
T ss_pred             ccCeEEEEECCCCeEEEEecCCCC---C--ceE--ECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCc
Confidence            478999999999999888875432   2  556  9999999998752         24789999998776543322   


Q ss_pred             ----CCCCeeEEEECCCCCEEEEecC--CCcEEEEEccCcceeee-eccccCCeEEEEEccCC-cEEEEeeCCCcEEEEe
Q 014475           79 ----PAEPIKPIAANSHGTYIAGGGQ--SGDIYMWEVASGRLLKK-WHAHYRAVTCLVFSEDG-SFLISGSEDGCVRIWS  150 (424)
Q Consensus        79 ----~~~~v~~~~~s~~~~~l~~~~~--dg~v~iwd~~~~~~~~~-~~~~~~~i~~~~~~~~~-~~l~s~~~dg~i~iwd  150 (424)
                          +......++|+|||++|+++..  ++.|.+||+.+++.+.. +...  ....+.+.|++ ..+++.+.||.+.+|+
T Consensus       102 ~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~--~~~~v~~~p~~~~~~~~~~~dg~~~~v~  179 (361)
T 2oiz_A          102 KRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAA--GCWSVIPQPNRPRSFMTICGDGGLLTIN  179 (361)
T ss_dssp             TBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGT--TEEEEEECTTSSSEEEEEETTSSEEEEE
T ss_pred             cccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCC--CcceeEEcCCCCeeEEEECCCCcEEEEE
Confidence                2345788999999999998864  57899999999988877 5432  22335677765 6788889999999998


Q ss_pred             CCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCcee--eeeec-----------
Q 014475          151 LLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLL--RNIVF-----------  217 (424)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~--~~~~~-----------  217 (424)
                      +..........    .....+.....++ .+.+.+++  ..++..+.++.+.++|+......  ..+..           
T Consensus       180 ~~~~g~~~~~~----~~~~~~~~~~~~~-~~~~~~~g--~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~  252 (361)
T 2oiz_A          180 LGEDGKVASQS----RSKQMFSVKDDPI-FIAPALDK--DKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWV  252 (361)
T ss_dssp             ECTTSSEEEEE----ECCCCSCTTTSCB-CSCCEECS--SEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCE
T ss_pred             ECCCCcEeeec----cccceEcCCCCce-EEEecccC--CEEEEEeCCCeEEEEEecCCCceecccccccCccccccccc
Confidence            85411100000    0001122222222 23345666  55666678899999998755322  22111           


Q ss_pred             CcceeEEEECCCCCEEEEEeC-----------CCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEE
Q 014475          218 PSVIDAIALDPAEHVFYAGSR-----------DGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLIS  285 (424)
Q Consensus       218 ~~~i~~~~~~~~~~~l~~~~~-----------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t  285 (424)
                      +.....++++|+++.++++..           .+.|.+||+.+.         +.+..+..+.  +.+++|+| +++|++
T Consensus       253 p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~---------~~v~~i~~~~--p~~ia~spdg~~l~v  321 (361)
T 2oiz_A          253 PGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTK---------QRVARIPGRD--ALSMTIDQQRNLMLT  321 (361)
T ss_dssp             ECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTT---------EEEEEEECTT--CCEEEEETTTTEEEE
T ss_pred             cCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCC---------cEEEEEecCC--eeEEEECCCCCEEEE
Confidence            122223789999888887653           347999999886         6677777766  89999999 889998


Q ss_pred             eCCCCcEEEEeCCCC--cEEEEEeccCCCeeEEEEEecCc
Q 014475          286 GSEDGMVRVWDPITH--NIVRMFRLAKGPVNNILVVRRPL  323 (424)
Q Consensus       286 ~~~dg~i~iwd~~~~--~~~~~~~~~~~~v~~l~~s~~~~  323 (424)
                      ++. +.|.+||..++  +.+.++..+...-..++++|+|.
T Consensus       322 ~n~-~~v~v~D~~t~~l~~~~~i~~~G~~P~~~~~~p~G~  360 (361)
T 2oiz_A          322 LDG-GNVNVYDISQPEPKLLRTIEGAAEASLQVQFHPVGG  360 (361)
T ss_dssp             ECS-SCEEEEECSSSSCEEEEEETTSCSSEEEEEECCCSC
T ss_pred             eCC-CeEEEEECCCCcceeeEEeccCCCCcEEEEecCCCC
Confidence            887 99999999999  99999866677778999999985

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.88  E-value=3.3e-20  Score=167.64  Aligned_cols=277  Identities=10%  Similarity=0.037  Sum_probs=182.4

Q ss_pred             eEEEeecCCC-CCceEEEeC--CCCceEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECC-CCceeeee
Q 014475            2 ELLIASSSVA-DTGIGCWDL--ESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWS-KPQVEVKS   77 (424)
Q Consensus         2 e~~lat~~~~-dg~i~vwd~--~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~-~~~~~~~~   77 (424)
                      -..|+.|++. ++.|.+|++  ++|+....-.........+..++  |+|+|+++++++.+  .|.+|++. +++.....
T Consensus         2 ~~~~~vg~~~~~~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a--~spdg~~l~~~~~~--~v~~~~~~~~g~~~~~~   77 (365)
T 1jof_A            2 LHHLMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMT--FDHERKNIYGAAMK--KWSSFAVKSPTEIVHEA   77 (365)
T ss_dssp             EEEEEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEE--ECTTSSEEEEEEBT--EEEEEEEEETTEEEEEE
T ss_pred             cEEEEEEEccCCCcEEEEEEECCCCCEEEeeEEccCCCCCCcEEE--ECCCCCEEEEEccc--eEEEEEECCCCCEEEee
Confidence            3445555523 357888765  56654322111011223456677  99999998887764  89999987 66543222


Q ss_pred             c--CCCCeeEEEECCCCCE--EEEec-------------CCCcEEEEEcc-Ccceeeeec----cccCCeEEEEEccCCc
Q 014475           78 L--PAEPIKPIAANSHGTY--IAGGG-------------QSGDIYMWEVA-SGRLLKKWH----AHYRAVTCLVFSEDGS  135 (424)
Q Consensus        78 ~--~~~~v~~~~~s~~~~~--l~~~~-------------~dg~v~iwd~~-~~~~~~~~~----~~~~~i~~~~~~~~~~  135 (424)
                      .  ..+.+.+++|+|+|++  ++++.             .+|.+.+|++. +++....+.    .+...+.+++|+|+|+
T Consensus        78 ~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~  157 (365)
T 1jof_A           78 SHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTET  157 (365)
T ss_dssp             EEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSS
T ss_pred             EeecCCCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCC
Confidence            1  1234677999999994  55553             68999999997 465544443    2456799999999999


Q ss_pred             EEEEeeC-CCcEEEEeCC-cccchhcccccccceEEeec--CCcCceeEEEEEEcCceeEEEEEeC-CCcEEEEecC--C
Q 014475          136 FLISGSE-DGCVRIWSLL-TVFEECESQRASHLYLHSFT--GHTLRITDIVIGYGGVSATIVSASE-DRTCKVWSLL--K  208 (424)
Q Consensus       136 ~l~s~~~-dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~~l~~~~~-d~~v~iwd~~--~  208 (424)
                      +++++.. ++.|++||+. ++.         ...+..+.  .|...+..++|+|++  +++++++. ++.|.+|++.  +
T Consensus       158 ~l~~~~~~~~~v~~~~~~~~g~---------~~~~~~~~~~~~g~~p~~~~~spdg--~~l~v~~~~~~~v~v~~~~~~~  226 (365)
T 1jof_A          158 YLYSADLTANKLWTHRKLASGE---------VELVGSVDAPDPGDHPRWVAMHPTG--NYLYALMEAGNRICEYVIDPAT  226 (365)
T ss_dssp             EEEEEETTTTEEEEEEECTTSC---------EEEEEEEECSSTTCCEEEEEECTTS--SEEEEEETTTTEEEEEEECTTT
T ss_pred             EEEEEcCCCCEEEEEEECCCCC---------EEEeeeEecCCCCCCCCEeEECCCC--CEEEEEECCCCeEEEEEEeCCC
Confidence            8887654 6799999996 321         11122222  245678899999998  77777664 7899999875  4


Q ss_pred             Cceee---eee-cC------c-------ceeEEE-ECCCCCEEEEEeCCC------cEEEEEcCC-CCCCCCCcCceeee
Q 014475          209 GRLLR---NIV-FP------S-------VIDAIA-LDPAEHVFYAGSRDG------SIYIAALNA-ESPSTSSYGMHIIG  263 (424)
Q Consensus       209 ~~~~~---~~~-~~------~-------~i~~~~-~~~~~~~l~~~~~dg------~i~i~d~~~-~~~~~~~~~~~~~~  263 (424)
                      ++...   .+. .+      .       .+..++ |+|+|++|+++..+.      .|.+|+++. +.       ...+.
T Consensus       227 g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~-------~~~~~  299 (365)
T 1jof_A          227 HMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGS-------IEKQL  299 (365)
T ss_dssp             CCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSC-------EEEEE
T ss_pred             CcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCC-------EEEee
Confidence            55421   222 11      1       478999 999999988776433      799999963 32       11111


Q ss_pred             -eecccCcCeEEEEecC----CCEEEEeCC-CCcEEEEeCCCC
Q 014475          264 -SLSDHSKAVTCLAYST----GDLLISGSE-DGMVRVWDPITH  300 (424)
Q Consensus       264 -~~~~~~~~i~~~~~~~----~~~l~t~~~-dg~i~iwd~~~~  300 (424)
                       ....+...+..++|+|    +++|++++. ++.|.+|++...
T Consensus       300 ~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~  342 (365)
T 1jof_A          300 FLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE  342 (365)
T ss_dssp             EEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred             eeeecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence             1333445567788888    788988876 489999998765

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.87  E-value=1.8e-20  Score=169.38  Aligned_cols=270  Identities=11%  Similarity=0.073  Sum_probs=180.3

Q ss_pred             eeEEEEEC--CCCceeeee----cCCCCeeEEEECCCCCEEEEecCCCcEEEEEcc-Ccceeeeeccc-cCCeEEEEEcc
Q 014475           61 GSILYWSW--SKPQVEVKS----LPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVA-SGRLLKKWHAH-YRAVTCLVFSE  132 (424)
Q Consensus        61 g~i~vwd~--~~~~~~~~~----~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~-~~~~~~~~~~~-~~~i~~~~~~~  132 (424)
                      +.|.+|++  .+++.....    .....+..++|+|++++|++++.+ .|.+|++. +++........ .+.+.+++|+|
T Consensus        14 ~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~sp   92 (365)
T 1jof_A           14 GAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGGHPRANDADT   92 (365)
T ss_dssp             CEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCSSGGGGCTTS
T ss_pred             CcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecCCCCccEEECC
Confidence            45777665  344443221    133478899999999999988887 99999997 77654433211 13356689999


Q ss_pred             CCcE--EEEee-------------CCCcEEEEeCCc-ccchhcccccccceEEeec-CCcCceeEEEEEEcCceeEEEEE
Q 014475          133 DGSF--LISGS-------------EDGCVRIWSLLT-VFEECESQRASHLYLHSFT-GHTLRITDIVIGYGGVSATIVSA  195 (424)
Q Consensus       133 ~~~~--l~s~~-------------~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~l~~~  195 (424)
                      ++++  ++++.             .+|.+.+|++.. +..        ...+..+. .+...+.+++|+|++  ++++++
T Consensus        93 dg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~--------~~~~~~~~~~~~~~~~~~~~spdG--~~l~~~  162 (365)
T 1jof_A           93 NTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKL--------EKNVQNYEYQENTGIHGMVFDPTE--TYLYSA  162 (365)
T ss_dssp             CCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCE--------EEEEEEEECCTTCCEEEEEECTTS--SEEEEE
T ss_pred             CCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcC--------cceEeeEEeCCCCcceEEEECCCC--CEEEEE
Confidence            9994  45553             688999999863 110        00111111 245678899999998  677766


Q ss_pred             e-CCCcEEEEecC-CCcee--eeee---cCcceeEEEECCCCCEEEEEeC-CCcEEEEEcCCCCCCCCCcCceeeeeec-
Q 014475          196 S-EDRTCKVWSLL-KGRLL--RNIV---FPSVIDAIALDPAEHVFYAGSR-DGSIYIAALNAESPSTSSYGMHIIGSLS-  266 (424)
Q Consensus       196 ~-~d~~v~iwd~~-~~~~~--~~~~---~~~~i~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~-  266 (424)
                      . .++.|.+||+. +++..  ..+.   +...+..++|+|+|+++++++. ++.+.+|+++........ ....+..+. 
T Consensus       163 ~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~-~~~~~~~~~~  241 (365)
T 1jof_A          163 DLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVY-THHSFPLIPP  241 (365)
T ss_dssp             ETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEE-EEEEEESSCT
T ss_pred             cCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEE-ccceEEcCCC
Confidence            5 46799999998 67643  2333   2456899999999999988775 689999988642110000 000111221 


Q ss_pred             ---ccCc------CeEEEE-ecC-CCEEEEeCCC-C-----cEEEEeCC-CCcEEE---EEeccCCCeeEEEEEe---cC
Q 014475          267 ---DHSK------AVTCLA-YST-GDLLISGSED-G-----MVRVWDPI-THNIVR---MFRLAKGPVNNILVVR---RP  322 (424)
Q Consensus       267 ---~~~~------~i~~~~-~~~-~~~l~t~~~d-g-----~i~iwd~~-~~~~~~---~~~~~~~~v~~l~~s~---~~  322 (424)
                         +|..      .+..++ |+| +++|++++.+ +     .|.+|++. +++...   .+..+......++|+|   ||
T Consensus       242 ~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg  321 (365)
T 1jof_A          242 GIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSD  321 (365)
T ss_dssp             TCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCT
T ss_pred             CcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCC
Confidence               2222      588999 999 8888776543 2     89999986 666543   2333555678899999   89


Q ss_pred             ceeeeccC-CCceeeccCCCC
Q 014475          323 LYLNLGSF-SNPHTSSRRHGS  342 (424)
Q Consensus       323 ~~l~~~~~-d~~i~iw~~~~~  342 (424)
                      ++|++++. ++.|.+|++...
T Consensus       322 ~~l~v~~~~~~~v~v~~~~~~  342 (365)
T 1jof_A          322 EWMAITDDQEGWLEIYRWKDE  342 (365)
T ss_dssp             TEEEEECSSSCEEEEEEEETT
T ss_pred             CEEEEEEcCCCeEEEEEEchh
Confidence            99998876 489999998755

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.87  E-value=1.5e-19  Score=178.48  Aligned_cols=312  Identities=12%  Similarity=0.057  Sum_probs=200.4

Q ss_pred             EEeecCCCCCceEEEeCCCCceEEEeeCCCCCCCceEE--ecceeecCCCccccCCCCc--------eeEEEEECCCCce
Q 014475            4 LIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLAC--VGQRFLASSQLREQPSASS--------GSILYWSWSKPQV   73 (424)
Q Consensus         4 ~lat~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~--~~~~~~~~~~~l~~~~~~~--------g~i~vwd~~~~~~   73 (424)
                      +|+++   ||+|++||+.+++....+..+......+..  +.  |+|||++++.++.+.        +.+.+||+.+++.
T Consensus        30 ~~~~~---~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~  104 (740)
T 4a5s_A           30 YLYKQ---ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYS--ISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQL  104 (740)
T ss_dssp             EEEEE---TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEE--ECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEE
T ss_pred             EEEEc---CCcEEEEECCCCceEEEEechhhhhhcccccceE--ECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcE
Confidence            45553   689999999999988777766543333322  55  899999999887641        4567999999887


Q ss_pred             eeeecCCCCeeEEEECCCCCEEEEecCCCcEEEEEccCcceeeee-ccccCCe-----------------EEEEEccCCc
Q 014475           74 EVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKW-HAHYRAV-----------------TCLVFSEDGS  135 (424)
Q Consensus        74 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~-~~~~~~i-----------------~~~~~~~~~~  135 (424)
                      .....+...+...+|||||+.||.+ .++.|++|++.+++..+.. .++...+                 ..+.|+|||+
T Consensus       105 ~~l~~~~~~~~~~~~SPdG~~la~~-~~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~  183 (740)
T 4a5s_A          105 ITEERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGT  183 (740)
T ss_dssp             CCSSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSS
T ss_pred             EEcccCCCcceeeEECCCCCEEEEE-ECCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcCCCcceEECCCCC
Confidence            6656667889999999999999987 4689999999887754422 2332222                 3589999999


Q ss_pred             EEEEeeCCC------------------------------------cEEEEeCCc---ccchhcccccccceEEeec----
Q 014475          136 FLISGSEDG------------------------------------CVRIWSLLT---VFEECESQRASHLYLHSFT----  172 (424)
Q Consensus       136 ~l~s~~~dg------------------------------------~i~iwd~~~---~~~~~~~~~~~~~~~~~~~----  172 (424)
                      .|+.++.|.                                    .|++||+.+   +..         .....+.    
T Consensus       184 ~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~---------~~~~~l~~~~~  254 (740)
T 4a5s_A          184 FLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTN---------ATSIQITAPAS  254 (740)
T ss_dssp             EEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSC---------CCEEEECCCHH
T ss_pred             EEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCc---------ceEEEecCCcc
Confidence            999876432                                    355555543   210         0111222    


Q ss_pred             --CCcCceeEEEEEEcCceeEEEEEeC----CCcEEEEecCCCc----ee--eee---ecCcce-----eEEEECCCCCE
Q 014475          173 --GHTLRITDIVIGYGGVSATIVSASE----DRTCKVWSLLKGR----LL--RNI---VFPSVI-----DAIALDPAEHV  232 (424)
Q Consensus       173 --~~~~~i~~~~~~~~~~~~~l~~~~~----d~~v~iwd~~~~~----~~--~~~---~~~~~i-----~~~~~~~~~~~  232 (424)
                        +|...+..++|+|++  +.++....    +..|.+||+.+++    +.  ..+   .+...+     ....|+|||+.
T Consensus       255 ~~~~~~~~~~~~wspdg--~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~  332 (740)
T 4a5s_A          255 MLIGDHYLCDVTWATQE--RISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNS  332 (740)
T ss_dssp             HHTSCEEEEEEEEEETT--EEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSE
T ss_pred             CCCCCeEEEEEEEeCCC--eEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcCCCCE
Confidence              377789999999998  65554432    2369999999887    22  222   133333     37889999998


Q ss_pred             EE-EEe-CCC--cEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEE-ecCCCEEEEeCC----CC--cEEEEeCCCCc
Q 014475          233 FY-AGS-RDG--SIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLA-YSTGDLLISGSE----DG--MVRVWDPITHN  301 (424)
Q Consensus       233 l~-~~~-~dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~l~t~~~----dg--~i~iwd~~~~~  301 (424)
                      ++ ..+ .+|  .|++||...+.          ...+......+..+. ++.+.+++++..    .+  .|...++..+.
T Consensus       333 l~~~~s~~~G~~~l~~~~~~~~~----------~~~lT~g~~~v~~~~~~d~~~i~f~~~~~~~~~~~~~ly~v~~~g~~  402 (740)
T 4a5s_A          333 FYKIISNEEGYRHICYFQIDKKD----------CTFITKGTWEVIGIEALTSDYLYYISNEYKGMPGGRNLYKIQLIDYT  402 (740)
T ss_dssp             EEEEEECTTSCEEEEEEETTCSS----------CEESCCSSSCEEEEEEECSSEEEEEESCGGGCTTCBEEEEEETTEEE
T ss_pred             EEEEEEcCCCceEEEEEECCCCc----------eEecccCCEEEEEEEEEeCCEEEEEEecCCCCCceeEEEEEECCCCC
Confidence            77 555 344  57888887653          223333344555544 332344445544    23  34445555444


Q ss_pred             EEEEEec----cCCCeeEEEEEecCceeeeccCC---CceeeccCCCC
Q 014475          302 IVRMFRL----AKGPVNNILVVRRPLYLNLGSFS---NPHTSSRRHGS  342 (424)
Q Consensus       302 ~~~~~~~----~~~~v~~l~~s~~~~~l~~~~~d---~~i~iw~~~~~  342 (424)
                      ....+..    .........|+|++++++.....   ..+.+++..++
T Consensus       403 ~~~~lt~~~~~~~~~~~~~~~S~dg~~~~~~~s~~~~p~~~l~~~~~~  450 (740)
T 4a5s_A          403 KVTCLSCELNPERCQYYSVSFSKEAKYYQLRCSGPGLPLYTLHSSVND  450 (740)
T ss_dssp             EEEESSTTTSTTTBCBEEEEECTTSSEEEEEECSBSSCEEEEEETTTT
T ss_pred             cceeeccccCCCCCceEEEEECCCCCEEEEEeCCCCCCEEEEEECCCC
Confidence            3333432    23568899999999987643322   24566666544

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.86  E-value=7.5e-19  Score=156.72  Aligned_cols=277  Identities=13%  Similarity=0.068  Sum_probs=190.0

Q ss_pred             ceEEecceeecCCCccccCCCCceeEEEEECCCCceeeeecCCCCeeEEEECCCCCEEEEecCCCcEEEEEccCcceeee
Q 014475           38 GLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKK  117 (424)
Q Consensus        38 ~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~  117 (424)
                      .+.++.  |++++..++..+.+ +.++.|.  .........+...+.+++|+|++++++++..++.|.+||..+++....
T Consensus         7 ~~~~~~--~~~~~~~~~~~~~~-~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~   81 (333)
T 2dg1_A            7 DLPTLF--YSGKSNSAVPIISE-SELQTIT--AEPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRP   81 (333)
T ss_dssp             CCCBCC--SCGGGGCSSCCCCG-GGSCEEE--CEEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEE
T ss_pred             ccceee--ecCCccceeEEeec-ccCcccc--cceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEE
Confidence            355666  99999988887666 8999993  222223334556779999999999888888899999999988876554


Q ss_pred             eccccCCeEEEEEccCCcEEEEeeCC----CcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEE
Q 014475          118 WHAHYRAVTCLVFSEDGSFLISGSED----GCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIV  193 (424)
Q Consensus       118 ~~~~~~~i~~~~~~~~~~~l~s~~~d----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~  193 (424)
                      ...+...+.+++++|+++++++...+    +.|.+||..+...         ........+...+.++++++++  .+++
T Consensus        82 ~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~---------~~~~~~~~~~~~~~~i~~d~~g--~l~v  150 (333)
T 2dg1_A           82 FVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNL---------QDIIEDLSTAYCIDDMVFDSKG--GFYF  150 (333)
T ss_dssp             EECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSC---------EEEECSSSSCCCEEEEEECTTS--CEEE
T ss_pred             eeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEE---------EEEEccCccCCcccceEECCCC--CEEE
Confidence            44566789999999999988877666    6899999865221         1011111234578899999887  6666


Q ss_pred             EEeC------CCcEEEEecCCCceeeeeecCcceeEEEECCCCCEEEEE-eCCCcEEEEEcCCCCCCCCCcCceeeeeec
Q 014475          194 SASE------DRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAG-SRDGSIYIAALNAESPSTSSYGMHIIGSLS  266 (424)
Q Consensus       194 ~~~~------d~~v~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~  266 (424)
                      +...      .+.|..+|..+++..........+..++|+|+++.++++ +.++.|++||.+................+.
T Consensus       151 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~  230 (333)
T 2dg1_A          151 TDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFT  230 (333)
T ss_dssp             EECCCBTTBCCEEEEEECTTSCCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECC
T ss_pred             EeccccccCCCceEEEEeCCCCEEEEeecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecC
Confidence            5543      355667776655544333344457899999999866554 567899999996421100000000111122


Q ss_pred             ccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCCCcEEEEEeccCC------CeeEEEEEecCceeeeccCCC
Q 014475          267 DHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKG------PVNNILVVRRPLYLNLGSFSN  332 (424)
Q Consensus       267 ~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~------~v~~l~~s~~~~~l~~~~~d~  332 (424)
                      ++ ..+..+++++ ++++++...++.|.+||. +++.+..+..+..      .+.+++|+|++..|..++.++
T Consensus       231 ~~-~~~~~i~~d~~G~l~v~~~~~~~v~~~d~-~g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~g  301 (333)
T 2dg1_A          231 GH-EGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSNDI  301 (333)
T ss_dssp             SS-SEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEECG
T ss_pred             CC-CCCCceEECCCCCEEEEEcCCCEEEEECC-CCCEEEEEEcCCCccccccCcceEEECCCCCEEEEEeCcc
Confidence            22 4678899999 888887777889999998 5777777765543      689999999987776665554

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.85  E-value=7.4e-20  Score=167.25  Aligned_cols=296  Identities=7%  Similarity=-0.120  Sum_probs=193.1

Q ss_pred             EEEeCCCCceEEEeeCCCCC--CCceEEecceeecCCCccccCCCCc--eeEEEEECCCCceeeeecCCCCe-eEEEECC
Q 014475           16 GCWDLESGAEQLRYKSCASP--PHGLACVGQRFLASSQLREQPSASS--GSILYWSWSKPQVEVKSLPAEPI-KPIAANS   90 (424)
Q Consensus        16 ~vwd~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~l~~~~~~~--g~i~vwd~~~~~~~~~~~~~~~v-~~~~~s~   90 (424)
                      ...|..+|+.+..+..+...  ...+..++  |+|+|+.++.+...+  ..|.+||..+++......+.... ..+.|+|
T Consensus        13 ~~~d~~~g~~~~~l~~~~~~~~~~~~~~~~--~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~sp   90 (396)
T 3c5m_A           13 TFVDSDTQVKVTRLTPTDIICHRNYFYQKC--FTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFIST   90 (396)
T ss_dssp             EEECTTTCCEEEECSCTTSCEECCCTTSCC--BCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECT
T ss_pred             eeecCCCCcceEEEecCCCCccceeeecCc--CCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECC
Confidence            34588888888777554322  11244455  999999988764432  47888899887755443333333 3488999


Q ss_pred             CCCEEEEecCCCcEEEEEccCcceeeeeccccCCeEE-------------------EEEccCCcEEEEe-----eCCCcE
Q 014475           91 HGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTC-------------------LVFSEDGSFLISG-----SEDGCV  146 (424)
Q Consensus        91 ~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~-------------------~~~~~~~~~l~s~-----~~dg~i  146 (424)
                      ||++|+.++.++.|++||+.+++.......+......                   +.|+|+++.++.+     ..+..|
T Consensus        91 dg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l  170 (396)
T 3c5m_A           91 DERAFFYVKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRL  170 (396)
T ss_dssp             TSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEE
T ss_pred             CCCEEEEEEcCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceE
Confidence            9999999988889999999888765555434332222                   2456666665543     356689


Q ss_pred             EEEeCCcccchhcccccccceEEeecCCcCceeEEEEEE-cCceeEEEEEeCC------CcEEEEecCCCceeeeeec--
Q 014475          147 RIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGY-GGVSATIVSASED------RTCKVWSLLKGRLLRNIVF--  217 (424)
Q Consensus       147 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~l~~~~~d------~~v~iwd~~~~~~~~~~~~--  217 (424)
                      .+||+.++.            ...+..+...+..+.|+| ++  ..|+..+.+      ..|.+||+..++......+  
T Consensus       171 ~~~d~~~g~------------~~~~~~~~~~~~~~~~sp~dg--~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~  236 (396)
T 3c5m_A          171 IKVDIETGE------------LEVIHQDTAWLGHPIYRPFDD--STVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAE  236 (396)
T ss_dssp             EEEETTTCC------------EEEEEEESSCEEEEEEETTEE--EEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCT
T ss_pred             EEEECCCCc------------EEeeccCCcccccceECCCCC--CEEEEEecCCCCCCCceEEEEECCCCceeEeeccCC
Confidence            999986521            112224566788899999 66  666655543      3688889876654333332  


Q ss_pred             CcceeEEEECCCCCEEEEEeCC-----CcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC--CCEEEEeC---
Q 014475          218 PSVIDAIALDPAEHVFYAGSRD-----GSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST--GDLLISGS---  287 (424)
Q Consensus       218 ~~~i~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~l~t~~---  287 (424)
                      ...+..++|+|+++.|+..+.+     +.|++||+.++..       ..+....+    .. +.|+|  ++++++++   
T Consensus       237 ~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~-------~~l~~~~~----~~-~~~s~~dg~~l~~~~~~~  304 (396)
T 3c5m_A          237 GESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLEN-------EEVMVMPP----CS-HLMSNFDGSLMVGDGCDA  304 (396)
T ss_dssp             TEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCE-------EEEEECCS----EE-EEEECSSSSEEEEEECCC
T ss_pred             CccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCe-------EEeeeCCC----CC-CCccCCCCceEEEecCCc
Confidence            2357889999999987776543     3499999987631       22222221    22 77887  66776643   


Q ss_pred             -------------CCCcEEEEeCCCCcEEEEEeccCC-----------CeeEEEEEecCceeeeccC-CCceeeccCC
Q 014475          288 -------------EDGMVRVWDPITHNIVRMFRLAKG-----------PVNNILVVRRPLYLNLGSF-SNPHTSSRRH  340 (424)
Q Consensus       288 -------------~dg~i~iwd~~~~~~~~~~~~~~~-----------~v~~l~~s~~~~~l~~~~~-d~~i~iw~~~  340 (424)
                                   .++.|++||+.+++. ..+..+..           .+..+.|+|+|+.|+.++. ++...+|.+.
T Consensus       305 p~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~~  381 (396)
T 3c5m_A          305 PVDVADADSYNIENDPFLYVLNTKAKSA-QKLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIAD  381 (396)
T ss_dssp             ----------CCCCCCEEEEEETTTTBC-CEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEE
T ss_pred             ceeeccccccccCCCCcEEEEecccCce-EEccCCCCccccccccccCCCCCceEccCCCeEEEEecCCCCceEEEEE
Confidence                         347899999988764 34444544           2567899999998876654 5666666544

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.85  E-value=2.5e-19  Score=175.04  Aligned_cols=313  Identities=8%  Similarity=-0.095  Sum_probs=197.8

Q ss_pred             EEEeec--CCCCCceEEEeCCCCceEEEeeCCCCCCC-ce-----EEecceee--cCCCc-cccCCCCceeEEEEECC--
Q 014475            3 LLIASS--SVADTGIGCWDLESGAEQLRYKSCASPPH-GL-----ACVGQRFL--ASSQL-REQPSASSGSILYWSWS--   69 (424)
Q Consensus         3 ~~lat~--~~~dg~i~vwd~~~~~~~~~~~~~~~~~~-~v-----~~~~~~~~--~~~~~-l~~~~~~~g~i~vwd~~--   69 (424)
                      .++++.  + .++...||....+...+.+..+..... .+     ....  |+  |||+. |+.+...+..|.+|+..  
T Consensus        36 ~~~~~~~~~-~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~--~~~SPDg~~~la~~~~~~~~l~~~~~~~~  112 (662)
T 3azo_A           36 VWWVAPRPA-EAGRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWA--GVPRPAGGPLLVFTHFGDQRLYAFEPDAP  112 (662)
T ss_dssp             EEEEEEETT-TTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEE--EECCSSSSCEEEEEBTTTCCEEEECTTST
T ss_pred             EEEEecCcc-cCCcEEEEEECCCCCcceeCCCCccccccccccCCccce--eeeecCCCeEEEEEECCCCeEEEEcCCCC
Confidence            345555  5 688999999655555556654432211 00     0222  44  99999 88776544788888876  


Q ss_pred             C-Cceeeeec-----CCCCeeEEEECCCCCEEEEecCC----------CcEEEEEccC------cceeeeec-cccCCeE
Q 014475           70 K-PQVEVKSL-----PAEPIKPIAANSHGTYIAGGGQS----------GDIYMWEVAS------GRLLKKWH-AHYRAVT  126 (424)
Q Consensus        70 ~-~~~~~~~~-----~~~~v~~~~~s~~~~~l~~~~~d----------g~v~iwd~~~------~~~~~~~~-~~~~~i~  126 (424)
                      + ++......     +...+..++|+|||+.|++++.+          ..|++||+.+      ++. ..+. .+...+.
T Consensus       113 g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~l~~~~~~~~~  191 (662)
T 3azo_A          113 GGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAV-RELSDDAHRFVT  191 (662)
T ss_dssp             TCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGS-EESSCSCSSEEC
T ss_pred             CCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCce-eEEEecCCCccc
Confidence            3 44333333     45678999999999999998876          5799999987      544 4444 5556788


Q ss_pred             EEEEccCCcEEEEeeCC--------CcEEEEeCC-cccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeC
Q 014475          127 CLVFSEDGSFLISGSED--------GCVRIWSLL-TVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASE  197 (424)
Q Consensus       127 ~~~~~~~~~~l~s~~~d--------g~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~  197 (424)
                      .+.|+|||++|+.++.+        ..|++||+. ++.        ..........|...+..+.|+|++  ++++++..
T Consensus       192 ~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~--------~~~~~~l~~~~~~~~~~~~~spdg--~l~~~~~~  261 (662)
T 3azo_A          192 GPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGR--------FADTRTLLGGPEEAIAQAEWAPDG--SLIVATDR  261 (662)
T ss_dssp             CCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSC--------EEEEEEEEEETTBCEEEEEECTTS--CEEEEECT
T ss_pred             CceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCc--------ccccEEeCCCCCceEcceEECCCC--eEEEEECC
Confidence            89999999999988755        379999986 320        001222233456788999999998  67778888


Q ss_pred             CC--cEEEEecCCCceeeeeecCcc---------eeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeec
Q 014475          198 DR--TCKVWSLLKGRLLRNIVFPSV---------IDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLS  266 (424)
Q Consensus       198 d~--~v~iwd~~~~~~~~~~~~~~~---------i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~  266 (424)
                      ++  .|.+||+.+++......+...         +..++++|++++++++.. +.+++|.++...        ..+..+.
T Consensus       262 ~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~--------~~~~~l~  332 (662)
T 3azo_A          262 TGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPES--------GELVDAA  332 (662)
T ss_dssp             TSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETTT--------TEEEECC
T ss_pred             CCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEECCC--------CcEEEec
Confidence            88  566677666665443332221         467889999999999998 999999554321        2245566


Q ss_pred             ccCcCeEEE-EecCCCEEE-EeCCCC--cEEEEeCCCCcEEEEEeccCCCeeEEEEEecCceeeeccCCCceeecc
Q 014475          267 DHSKAVTCL-AYSTGDLLI-SGSEDG--MVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSR  338 (424)
Q Consensus       267 ~~~~~i~~~-~~~~~~~l~-t~~~dg--~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~d~~i~iw~  338 (424)
                      .|...+..+ +++++.+++ +++.+.  .|.+||+.+++.......+...+....+.+.....+.+..+..+..|-
T Consensus       333 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~dg~~i~~~~  408 (662)
T 3azo_A          333 GPWTEWAATLTVSGTRAVGVAASPRTAYEVVELDTVTGRARTIGARHTDPVDPAYYPEPQIRTFTAPDGREIHAHI  408 (662)
T ss_dssp             SSCCEEEEEEEEETTEEEEEEEETTEEEEEEEEETTTCCEEEEESCCCCSSCGGGSCCCEEEEEECTTSCEEEEEE
T ss_pred             CCCCeEEEEEecCCCEEEEEEcCCCCCCEEEEEECCCCceEEeecCCcccCCccccCcceEEEEEcCCCCEEEEEE
Confidence            677777777 555443443 344443  466667777775544444433333333333333333333333444443

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.84  E-value=5.7e-18  Score=150.57  Aligned_cols=241  Identities=15%  Similarity=0.135  Sum_probs=184.3

Q ss_pred             CCCeeEEEECCCCCEEEEecCC------------------------CcEEEEEccCcceeeeec-cccCCeEEEEEccCC
Q 014475           80 AEPIKPIAANSHGTYIAGGGQS------------------------GDIYMWEVASGRLLKKWH-AHYRAVTCLVFSEDG  134 (424)
Q Consensus        80 ~~~v~~~~~s~~~~~l~~~~~d------------------------g~v~iwd~~~~~~~~~~~-~~~~~i~~~~~~~~~  134 (424)
                      -+.+.+++++|+|+++++...+                        +.|.+||..+++.+..+. .+...+..++++|++
T Consensus        23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g  102 (329)
T 3fvz_A           23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDG  102 (329)
T ss_dssp             CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTS
T ss_pred             cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCC
Confidence            4679999999999999888776                        479999998888876654 445678999999999


Q ss_pred             cEEEEeeCCCcEEEEeCCcccchhcccccccceEEee---------cCCcCceeEEEEEE-cCceeEEEEEe-CCCcEEE
Q 014475          135 SFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSF---------TGHTLRITDIVIGY-GGVSATIVSAS-EDRTCKV  203 (424)
Q Consensus       135 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~---------~~~~~~i~~~~~~~-~~~~~~l~~~~-~d~~v~i  203 (424)
                      +++++...++.|++||.....          ..+..+         ..+......+++++ ++  .++++.+ .++.|++
T Consensus       103 ~l~v~d~~~~~v~~~~~~g~~----------~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g--~lyv~d~~~~~~I~~  170 (329)
T 3fvz_A          103 NYWVTDVALHQVFKLDPHSKE----------GPLLILGRSMQPGSDQNHFCQPTDVAVEPSTG--AVFVSDGYCNSRIVQ  170 (329)
T ss_dssp             CEEEEETTTTEEEEECTTCSS----------CCSEEESBTTBCCCSTTCCSSEEEEEECTTTC--CEEEEECSSCCEEEE
T ss_pred             CEEEEECCCCEEEEEeCCCCe----------EEEEEecccCCCCCCccccCCCcEEEEeCCCC--eEEEEeCCCCCeEEE
Confidence            988888889999999985421          011122         23445688999998 66  6777775 6899999


Q ss_pred             EecCCCceeeeeecC-----------cceeEEEECCC-CCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeee--cccC
Q 014475          204 WSLLKGRLLRNIVFP-----------SVIDAIALDPA-EHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSL--SDHS  269 (424)
Q Consensus       204 wd~~~~~~~~~~~~~-----------~~i~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~--~~~~  269 (424)
                      || .+++.+..+...           .....++++|+ +.++++...++.|++|+..++         +.+..+  ..+.
T Consensus       171 ~~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G---------~~~~~~~~~~~~  240 (329)
T 3fvz_A          171 FS-PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTK---------EFVREIKHASFG  240 (329)
T ss_dssp             EC-TTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTC---------CEEEEECCTTTT
T ss_pred             Ec-CCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCC---------cEEEEEeccccC
Confidence            99 567776666421           23789999998 777777778889999999855         333333  3456


Q ss_pred             cCeEEEEecCCCEEEEeC-------CCCcEEEEeCCCCcEEEEEe---ccCCCeeEEEEEecCceeeeccCCCceeeccC
Q 014475          270 KAVTCLAYSTGDLLISGS-------EDGMVRVWDPITHNIVRMFR---LAKGPVNNILVVRRPLYLNLGSFSNPHTSSRR  339 (424)
Q Consensus       270 ~~i~~~~~~~~~~l~t~~-------~dg~i~iwd~~~~~~~~~~~---~~~~~v~~l~~s~~~~~l~~~~~d~~i~iw~~  339 (424)
                      ..+..++++|+..+++.+       .+..|++||..+++.+..+.   .+......++++|+|..+++...++.|++|++
T Consensus       241 ~~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~  320 (329)
T 3fvz_A          241 RNVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTL  320 (329)
T ss_dssp             TCEEEEEEETTEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEE
T ss_pred             CCcceeeecCCEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeC
Confidence            678888888843443333       34589999999999999884   56667899999999988899999999999998


Q ss_pred             CCC
Q 014475          340 HGS  342 (424)
Q Consensus       340 ~~~  342 (424)
                      .+.
T Consensus       321 ~~~  323 (329)
T 3fvz_A          321 TEK  323 (329)
T ss_dssp             EEC
T ss_pred             Ccc
Confidence            754

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.83  E-value=1.6e-17  Score=144.79  Aligned_cols=236  Identities=9%  Similarity=0.171  Sum_probs=176.5

Q ss_pred             CCCCeeEEEECCCCCEEEEecCCCcEEEEEccCcceeeeec------cccCCeEEEEE-ccCCcEEEEeeC-CCcEEEEe
Q 014475           79 PAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWH------AHYRAVTCLVF-SEDGSFLISGSE-DGCVRIWS  150 (424)
Q Consensus        79 ~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~------~~~~~i~~~~~-~~~~~~l~s~~~-dg~i~iwd  150 (424)
                      +...+.+++++++++++++...++.|.+||.. ++.+..+.      ++...+..+++ .++++++++... ++.|.+||
T Consensus        28 ~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d  106 (286)
T 1q7f_A           28 QFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYN  106 (286)
T ss_dssp             CBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEEC
T ss_pred             ccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEEC
Confidence            44578999999999988888888999999976 65555553      24467899999 467776666643 78999999


Q ss_pred             CCcccchhcccccccceEEeec-CCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeee---cCcceeEEEE
Q 014475          151 LLTVFEECESQRASHLYLHSFT-GHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV---FPSVIDAIAL  226 (424)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~---~~~~i~~~~~  226 (424)
                      ...            ..+..+. .+...+.++++.+++  +++++...++.|.+||.. ++.+..+.   ....+..+++
T Consensus       107 ~~g------------~~~~~~~~~~~~~~~~i~~~~~g--~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~~i~~  171 (286)
T 1q7f_A          107 QYG------------QFVRKFGATILQHPRGVTVDNKG--RIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVV  171 (286)
T ss_dssp             TTS------------CEEEEECTTTCSCEEEEEECTTS--CEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEE
T ss_pred             CCC------------cEEEEecCccCCCceEEEEeCCC--CEEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCcEEEEE
Confidence            532            1122222 244567889998887  777777778999999964 55565554   2346889999


Q ss_pred             CCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecc--cCcCeEEEEecC-CCEEEEeCCCC-cEEEEeCCCCcE
Q 014475          227 DPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSD--HSKAVTCLAYST-GDLLISGSEDG-MVRVWDPITHNI  302 (424)
Q Consensus       227 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~~~~~-~~~l~t~~~dg-~i~iwd~~~~~~  302 (424)
                      +|+++++++...++.|++||....          .+..+..  +...+..+++++ ++++++...++ .|.+||. +++.
T Consensus       172 ~~~g~l~v~~~~~~~i~~~~~~g~----------~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~  240 (286)
T 1q7f_A          172 NDKQEIFISDNRAHCVKVFNYEGQ----------YLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQL  240 (286)
T ss_dssp             CSSSEEEEEEGGGTEEEEEETTCC----------EEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCE
T ss_pred             CCCCCEEEEECCCCEEEEEcCCCC----------EEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECC-CCCE
Confidence            999998887788999999997542          2333332  336789999999 88888887776 9999995 5777


Q ss_pred             EEEEeccCC--CeeEEEEEecCceeeeccCCCceeeccCCCC
Q 014475          303 VRMFRLAKG--PVNNILVVRRPLYLNLGSFSNPHTSSRRHGS  342 (424)
Q Consensus       303 ~~~~~~~~~--~v~~l~~s~~~~~l~~~~~d~~i~iw~~~~~  342 (424)
                      +..+..+..  .+.+++++|+|+++++ +.|+.|++|+....
T Consensus       241 ~~~~~~~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~~  281 (286)
T 1q7f_A          241 ISALESKVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQL  281 (286)
T ss_dssp             EEEEEESSCCSCEEEEEEETTTEEEEE-ETTTEEEEEECSCC
T ss_pred             EEEEcccCCCCcceeEEECCCCcEEEE-CCCCeEEEEEcccc
Confidence            887776543  4779999999987777 57999999998644

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.82  E-value=2.6e-18  Score=154.54  Aligned_cols=258  Identities=10%  Similarity=0.026  Sum_probs=178.9

Q ss_pred             ceeEEEEECCCCceeeeecCCCCeeEEEECCCCCEEEEec----------CCCcEEEEEccCcceeeeeccc------cC
Q 014475           60 SGSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGG----------QSGDIYMWEVASGRLLKKWHAH------YR  123 (424)
Q Consensus        60 ~g~i~vwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~----------~dg~v~iwd~~~~~~~~~~~~~------~~  123 (424)
                      |+.|.+||..+++........... .++|+||+++++++.          .++.|.+||..+++.+..+...      ..
T Consensus        30 d~~v~v~D~~t~~~~~~i~~g~~p-~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~  108 (361)
T 2oiz_A           30 ESRVHVYDYTNGKFLGMVPTAFNG-HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLN  108 (361)
T ss_dssp             GCEEEEEETTTCCEEEEEECCEEE-EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCC
T ss_pred             cCeEEEEECCCCeEEEEecCCCCC-ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCC
Confidence            389999999888765443333333 899999999999886          2567999999998888777532      34


Q ss_pred             CeEEEEEccCCcEEEEeeC--CCcEEEEeCCcccchhcccccccceEEe-ecCCcCceeEEEEEEcCceeEEEEEeCCCc
Q 014475          124 AVTCLVFSEDGSFLISGSE--DGCVRIWSLLTVFEECESQRASHLYLHS-FTGHTLRITDIVIGYGGVSATIVSASEDRT  200 (424)
Q Consensus       124 ~i~~~~~~~~~~~l~s~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~  200 (424)
                      ....++++|+|++|+++..  ++.|.+||+.+.           ..+.. +.. . ....+.+.|++. ..+++.+.||.
T Consensus       109 ~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~-----------~~~~~~i~~-~-~~~~v~~~p~~~-~~~~~~~~dg~  174 (361)
T 2oiz_A          109 YDGLFRQTTDGKFIVLQNASPATSIGIVDVAKG-----------DYVEDVTAA-A-GCWSVIPQPNRP-RSFMTICGDGG  174 (361)
T ss_dssp             CGGGEEECTTSSEEEEEEESSSEEEEEEETTTT-----------EEEEEEGGG-T-TEEEEEECTTSS-SEEEEEETTSS
T ss_pred             CcceEEECCCCCEEEEECCCCCCeEEEEECCCC-----------cEEEEEecC-C-CcceeEEcCCCC-eeEEEECCCCc
Confidence            5678999999999998864  578999999663           22333 221 1 112244556553 57788889999


Q ss_pred             EEEEecCC-Cceeeee------ecCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeec------c
Q 014475          201 CKVWSLLK-GRLLRNI------VFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLS------D  267 (424)
Q Consensus       201 v~iwd~~~-~~~~~~~------~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~------~  267 (424)
                      +.+|+... ++.....      ........+..+|++..++..+.++.+.++|+.....       .....+.      .
T Consensus       175 ~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~-------~~~~~~~~~~~~~~  247 (361)
T 2oiz_A          175 LLTINLGEDGKVASQSRSKQMFSVKDDPIFIAPALDKDKAHFVSYYGNVYSADFSGDEV-------KVDGPWSLLNDEDK  247 (361)
T ss_dssp             EEEEEECTTSSEEEEEECCCCSCTTTSCBCSCCEECSSEEEEEBTTSEEEEEECSSSSC-------EEEEEEESCCHHHH
T ss_pred             EEEEEECCCCcEeeeccccceEcCCCCceEEEecccCCEEEEEeCCCeEEEEEecCCCc-------eecccccccCcccc
Confidence            99999865 5544211      1111112233356677777778889999999975431       1111110      0


Q ss_pred             c----CcCeEEEEecC-CCEEEEeCC-----------CCcEEEEeCCCCcEEEEEeccCCCeeEEEEEecCceeeeccCC
Q 014475          268 H----SKAVTCLAYST-GDLLISGSE-----------DGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSFS  331 (424)
Q Consensus       268 ~----~~~i~~~~~~~-~~~l~t~~~-----------dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~d  331 (424)
                      +    ......++++| ++.++++..           .+.|.+||+.+++.+.++..+.  ..+++|+|||++|++++. 
T Consensus       248 ~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~--p~~ia~spdg~~l~v~n~-  324 (361)
T 2oiz_A          248 AKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD--ALSMTIDQQRNLMLTLDG-  324 (361)
T ss_dssp             HTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT--CCEEEEETTTTEEEEECS-
T ss_pred             ccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC--eeEEEECCCCCEEEEeCC-
Confidence            0    11112367888 666665432           3489999999999999999876  999999999999998886 


Q ss_pred             CceeeccCCCC
Q 014475          332 NPHTSSRRHGS  342 (424)
Q Consensus       332 ~~i~iw~~~~~  342 (424)
                      +.|.+||..+.
T Consensus       325 ~~v~v~D~~t~  335 (361)
T 2oiz_A          325 GNVNVYDISQP  335 (361)
T ss_dssp             SCEEEEECSSS
T ss_pred             CeEEEEECCCC
Confidence            99999999877

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.82  E-value=3.2e-17  Score=154.86  Aligned_cols=320  Identities=11%  Similarity=0.055  Sum_probs=223.3

Q ss_pred             EEEeecCCCCCceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECC--CCceeeeecCC
Q 014475            3 LLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWS--KPQVEVKSLPA   80 (424)
Q Consensus         3 ~~lat~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~--~~~~~~~~~~~   80 (424)
                      .++++.. .+++|.++|..+++.+.++....    .+..+.  |+|+|+++++++.+ +.|.+||+.  +.+........
T Consensus       168 ~~~V~~~-~~~~V~viD~~t~~v~~~i~~g~----~p~~v~--~SpDGr~lyv~~~d-g~V~viD~~~~t~~~v~~i~~G  239 (567)
T 1qks_A          168 LFSVTLR-DAGQIALIDGSTYEIKTVLDTGY----AVHISR--LSASGRYLFVIGRD-GKVNMIDLWMKEPTTVAEIKIG  239 (567)
T ss_dssp             EEEEEET-TTTEEEEEETTTCCEEEEEECSS----CEEEEE--ECTTSCEEEEEETT-SEEEEEETTSSSCCEEEEEECC
T ss_pred             eEEEEeC-CCCeEEEEECCCCeEEEEEeCCC----CccceE--ECCCCCEEEEEcCC-CeEEEEECCCCCCcEeEEEecC
Confidence            4566777 89999999999999999887432    345666  99999999988876 999999995  66655554455


Q ss_pred             CCeeEEEEC----CCCCEEEEecC-CCcEEEEEccCcceeeeecc----------ccC-CeEEEEEccCCcE-EEEeeCC
Q 014475           81 EPIKPIAAN----SHGTYIAGGGQ-SGDIYMWEVASGRLLKKWHA----------HYR-AVTCLVFSEDGSF-LISGSED  143 (424)
Q Consensus        81 ~~v~~~~~s----~~~~~l~~~~~-dg~v~iwd~~~~~~~~~~~~----------~~~-~i~~~~~~~~~~~-l~s~~~d  143 (424)
                      .....++|+    |||++++++.. +++|.++|..+.+.+..+..          |.. .+..+..++++.. ++....+
T Consensus       240 ~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~  319 (567)
T 1qks_A          240 SEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKET  319 (567)
T ss_dssp             SEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTT
T ss_pred             CCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCC
Confidence            667899999    69999888765 48999999999988877642          112 5778888887554 4555567


Q ss_pred             CcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEE-eCCCcEEEEecCCCceeeeeec-C---
Q 014475          144 GCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSA-SEDRTCKVWSLLKGRLLRNIVF-P---  218 (424)
Q Consensus       144 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~-~~d~~v~iwd~~~~~~~~~~~~-~---  218 (424)
                      |.|.++|..+.         ....+..+. ......++.|++++  ++++++ ..++.|.++|+.+++....+.. .   
T Consensus       320 g~v~~vd~~~~---------~~~~v~~i~-~~~~~~d~~~~pdg--r~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~P  387 (567)
T 1qks_A          320 GKILLVDYTDL---------NNLKTTEIS-AERFLHDGGLDGSH--RYFITAANARNKLVVIDTKEGKLVAIEDTGGQTP  387 (567)
T ss_dssp             TEEEEEETTCS---------SEEEEEEEE-CCSSEEEEEECTTS--CEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSB
T ss_pred             CeEEEEecCCC---------ccceeeeee-ccccccCceECCCC--CEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCC
Confidence            99999998652         111222222 23345678899988  665554 4678999999999988776654 2   


Q ss_pred             cceeEEE-ECCCCCEEE-EEe-CCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCC------
Q 014475          219 SVIDAIA-LDPAEHVFY-AGS-RDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSE------  288 (424)
Q Consensus       219 ~~i~~~~-~~~~~~~l~-~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~------  288 (424)
                      .+-.... ++|++..++ ++. .++.|.++|......  ....++.+..+......-..+..+| ++++.+...      
T Consensus       388 hpg~g~~~~~p~~g~v~~t~~~g~~~Vsvid~~~~~~--~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~  465 (567)
T 1qks_A          388 HPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPEGH--PDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAE  465 (567)
T ss_dssp             CCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTC--TTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHH
T ss_pred             CCccceeeECCCCCcEEEeCCCCCCeEEEecCCCCCC--ccccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCcc
Confidence            1111222 578755554 443 468999999987431  1222456666665444445577889 788777653      


Q ss_pred             -CCcEEEEeCCCC-----c-EEEEEec--------cCCCeeEEEEEecCceeeecc-----CCCceeeccCCCCCC
Q 014475          289 -DGMVRVWDPITH-----N-IVRMFRL--------AKGPVNNILVVRRPLYLNLGS-----FSNPHTSSRRHGSQL  344 (424)
Q Consensus       289 -dg~i~iwd~~~~-----~-~~~~~~~--------~~~~v~~l~~s~~~~~l~~~~-----~d~~i~iw~~~~~~~  344 (424)
                       .++|.++|+.+.     . ....+..        ....+..+.|+|+|+++..+.     .++.|.++|..+.++
T Consensus       466 ~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D~~t~~~  541 (567)
T 1qks_A          466 ISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLEL  541 (567)
T ss_dssp             HHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTTEE
T ss_pred             cCceEEEEECCcccccccCCCcEEeccccccccCCCCcceEeeeECCCCCEEEEEeecCCCCCCcEEEEECCCceE
Confidence             358999999876     2 1233321        134788999999999886652     378899999887754

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.81  E-value=4.6e-18  Score=154.95  Aligned_cols=236  Identities=10%  Similarity=0.008  Sum_probs=163.7

Q ss_pred             EEECCCCCEEEEecC-CC--cEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccc
Q 014475           86 IAANSHGTYIAGGGQ-SG--DIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQR  162 (424)
Q Consensus        86 ~~~s~~~~~l~~~~~-dg--~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~  162 (424)
                      .+|+|||++|+.++. +|  .|.+||+.+++.......+...+..+.|+||++.|+.++.++.|++||+.++.       
T Consensus        41 ~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~-------  113 (388)
T 3pe7_A           41 KCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLE-------  113 (388)
T ss_dssp             CCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCC-------
T ss_pred             ccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCc-------
Confidence            789999999998877 66  48889999888777776666666677899999999999999999999997632       


Q ss_pred             cccceEEeecCCcCceeEEEE--EEcCceeEEEEE----------------------eCCCcEEEEecCCCceeeeeecC
Q 014475          163 ASHLYLHSFTGHTLRITDIVI--GYGGVSATIVSA----------------------SEDRTCKVWSLLKGRLLRNIVFP  218 (424)
Q Consensus       163 ~~~~~~~~~~~~~~~i~~~~~--~~~~~~~~l~~~----------------------~~d~~v~iwd~~~~~~~~~~~~~  218 (424)
                          .......+...+....+  ++++  ..++..                      ..+..|.+||+.+++......+.
T Consensus       114 ----~~~~~~~~~~~~~~~~~~~~~dg--~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~  187 (388)
T 3pe7_A          114 ----ENVVYQVPAEWVGYGTWVANSDC--TKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVILQEN  187 (388)
T ss_dssp             ----EEEEEECCTTEEEEEEEEECTTS--SEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEEEEES
T ss_pred             ----ceeeeechhhcccccceeECCCC--CeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEEeecCC
Confidence                12223334444444444  4555  566532                      24467999999998876666677


Q ss_pred             cceeEEEECC-CCCEEEEEeCC------CcEEEEEcCCCCCCCCCcCceeeeeecccC--cCeEEEEecC-CCEEEEeCC
Q 014475          219 SVIDAIALDP-AEHVFYAGSRD------GSIYIAALNAESPSTSSYGMHIIGSLSDHS--KAVTCLAYST-GDLLISGSE  288 (424)
Q Consensus       219 ~~i~~~~~~~-~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~--~~i~~~~~~~-~~~l~t~~~  288 (424)
                      ..+..++|+| +++.++....+      ..|.++|.....          ...+..+.  ..+...+|+| ++.|+..+.
T Consensus       188 ~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~----------~~~l~~~~~~~~~~~~~~spdg~~l~~~~~  257 (388)
T 3pe7_A          188 QWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTN----------MRKVKTHAEGESCTHEFWVPDGSALVYVSY  257 (388)
T ss_dssp             SCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCC----------CEESCCCCTTEEEEEEEECTTSSCEEEEEE
T ss_pred             ccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCc----------eEEeeeCCCCcccccceECCCCCEEEEEec
Confidence            7899999999 99988877653      378888876643          22233333  3577889999 876655432


Q ss_pred             -C----CcEEEEeCCCCcEEE--EEeccCC---CeeEEEEEecCceeeec---------cCCCceeeccCCCCCC
Q 014475          289 -D----GMVRVWDPITHNIVR--MFRLAKG---PVNNILVVRRPLYLNLG---------SFSNPHTSSRRHGSQL  344 (424)
Q Consensus       289 -d----g~i~iwd~~~~~~~~--~~~~~~~---~v~~l~~s~~~~~l~~~---------~~d~~i~iw~~~~~~~  344 (424)
                       +    ..|++||+.+++...  .+..+..   ....+.|+|||+.|+..         ..+..|++|++.+++.
T Consensus       258 ~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~  332 (388)
T 3pe7_A          258 LKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQ  332 (388)
T ss_dssp             ETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTTEE
T ss_pred             CCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCce
Confidence             2    239999999987433  3332110   12234799999998864         4566899999987653

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.81  E-value=2.2e-18  Score=170.23  Aligned_cols=284  Identities=10%  Similarity=0.010  Sum_probs=180.2

Q ss_pred             EecceeecCCCccccCCCCceeEEEEECCCCceeee-ecCCC-----CeeEEEECCCCCEEEEecCC---------CcEE
Q 014475           41 CVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVK-SLPAE-----PIKPIAANSHGTYIAGGGQS---------GDIY  105 (424)
Q Consensus        41 ~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~-~~~~~-----~v~~~~~s~~~~~l~~~~~d---------g~v~  105 (424)
                      .+.  |+|+|++++++  + |.|++||+.+++.... ..+..     ....++|||||++|+.++.+         +.+.
T Consensus        21 ~~~--w~~dg~~~~~~--~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~   95 (740)
T 4a5s_A           21 SLR--WISDHEYLYKQ--E-NNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYD   95 (740)
T ss_dssp             CEE--ECSSSEEEEEE--T-TEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEE
T ss_pred             ccE--ECCCCcEEEEc--C-CcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEE
Confidence            445  99999988886  4 9999999998875433 22321     22448899999999998875         5678


Q ss_pred             EEEccCcceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCc---------C
Q 014475          106 MWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHT---------L  176 (424)
Q Consensus       106 iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~---------~  176 (424)
                      +||+.+++.. .+..|...+...+|+|||+.|+.+. ++.|++|++.++....-......  ...+.++.         .
T Consensus        96 ~~d~~~~~~~-~l~~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~~lt~~g~~--~~~~~g~~~~v~~ee~~~  171 (740)
T 4a5s_A           96 IYDLNKRQLI-TEERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKE--DIIYNGITDWVYEEEVFS  171 (740)
T ss_dssp             EEETTTTEEC-CSSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBT--TTEEESBCCHHHHHHTSS
T ss_pred             EEECCCCcEE-EcccCCCcceeeEECCCCCEEEEEE-CCeEEEEECCCCceEEEcCCCCc--cceecCcccccccchhcC
Confidence            9999998754 4666778899999999999998885 67999999976432110000000  00112222         2


Q ss_pred             ceeEEEEEEcCceeEEEEEeCCC------------------------------------cEEEEecCC---Cc--eeeee
Q 014475          177 RITDIVIGYGGVSATIVSASEDR------------------------------------TCKVWSLLK---GR--LLRNI  215 (424)
Q Consensus       177 ~i~~~~~~~~~~~~~l~~~~~d~------------------------------------~v~iwd~~~---~~--~~~~~  215 (424)
                      ....+.|+|++  +.|+.++.|.                                    .|.+||+.+   ++  ....+
T Consensus       172 ~~~~~~wSpDg--~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l  249 (740)
T 4a5s_A          172 AYSALWWSPNG--TFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQI  249 (740)
T ss_dssp             SSBCEEECTTS--SEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEE
T ss_pred             CCcceEECCCC--CEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEe
Confidence            22458899998  7777765321                                    488899988   73  12223


Q ss_pred             e-------cCcceeEEEECCCCCEEEEEeC----CCcEEEEEcCCCCCCCCCcCceeeeee--cccCcCeE-----EEEe
Q 014475          216 V-------FPSVIDAIALDPAEHVFYAGSR----DGSIYIAALNAESPSTSSYGMHIIGSL--SDHSKAVT-----CLAY  277 (424)
Q Consensus       216 ~-------~~~~i~~~~~~~~~~~l~~~~~----dg~i~i~d~~~~~~~~~~~~~~~~~~~--~~~~~~i~-----~~~~  277 (424)
                      .       +...+..++|+|+|+.++....    +..|++||+.++.....   ...+..+  ..|...|.     ...|
T Consensus       250 ~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~---~~~~~~l~~~~~~~~v~~~~~~~p~f  326 (740)
T 4a5s_A          250 TAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWN---CLVARQHIEMSTTGWVGRFRPSEPHF  326 (740)
T ss_dssp             CCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEE---ECGGGCEEEECSSSCSSSSSCCCCEE
T ss_pred             cCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccc---eeEEEEeeeccCCceEccCcCCCceE
Confidence            2       4556889999999997665543    23799999988641000   0001111  34554444     6789


Q ss_pred             cC-CCEEE-EeC-CCC--cEEEEeCCCCcEEEEEeccCCCeeEEEEEecCceeee-ccC----CCceeeccCC
Q 014475          278 ST-GDLLI-SGS-EDG--MVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNL-GSF----SNPHTSSRRH  340 (424)
Q Consensus       278 ~~-~~~l~-t~~-~dg--~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~-~~~----d~~i~iw~~~  340 (424)
                      +| |+.|+ ..+ .+|  .|.+||+..++.. .+......|..+.. +|++.|+. ++.    .+...+|.+.
T Consensus       327 spDG~~l~~~~s~~~G~~~l~~~~~~~~~~~-~lT~g~~~v~~~~~-~d~~~i~f~~~~~~~~~~~~~ly~v~  397 (740)
T 4a5s_A          327 TLDGNSFYKIISNEEGYRHICYFQIDKKDCT-FITKGTWEVIGIEA-LTSDYLYYISNEYKGMPGGRNLYKIQ  397 (740)
T ss_dssp             CTTSSEEEEEEECTTSCEEEEEEETTCSSCE-ESCCSSSCEEEEEE-ECSSEEEEEESCGGGCTTCBEEEEEE
T ss_pred             cCCCCEEEEEEEcCCCceEEEEEECCCCceE-ecccCCEEEEEEEE-EeCCEEEEEEecCCCCCceeEEEEEE
Confidence            99 87766 554 344  5888998876554 34434556666543 44665544 333    2445555543

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.81  E-value=5e-18  Score=165.85  Aligned_cols=286  Identities=12%  Similarity=0.022  Sum_probs=184.2

Q ss_pred             CCceEEecceeecCCCccccC--CCCceeEEEEECC-CCceeeeecCCCCee---------EEEEC--CCCCE-EEEecC
Q 014475           36 PHGLACVGQRFLASSQLREQP--SASSGSILYWSWS-KPQVEVKSLPAEPIK---------PIAAN--SHGTY-IAGGGQ  100 (424)
Q Consensus        36 ~~~v~~~~~~~~~~~~~l~~~--~~~~g~i~vwd~~-~~~~~~~~~~~~~v~---------~~~~s--~~~~~-l~~~~~  100 (424)
                      ...+..++  ++++..+++..  ..+ +...||... .++......+...+.         ...|+  |||+. |+.++.
T Consensus        23 ~~~~~~~~--~s~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~~   99 (662)
T 3azo_A           23 SGRPACVG--AVGDEVWWVAPRPAEA-GRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFTHF   99 (662)
T ss_dssp             CSCCEEEE--EETTEEEEEEEETTTT-TEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEEBT
T ss_pred             CCccceeE--EcCCeEEEEecCcccC-CcEEEEEECCCCCcceeCCCCccccccccccCCccceeeeecCCCeEEEEEEC
Confidence            35567777  88876666665  444 889999853 333333334444555         56565  99998 776543


Q ss_pred             -CCcEEEEEcc--Ccceeeeecc-----ccCCeEEEEEccCCcEEEEeeCC----------CcEEEEeCCcccchhcccc
Q 014475          101 -SGDIYMWEVA--SGRLLKKWHA-----HYRAVTCLVFSEDGSFLISGSED----------GCVRIWSLLTVFEECESQR  162 (424)
Q Consensus       101 -dg~v~iwd~~--~~~~~~~~~~-----~~~~i~~~~~~~~~~~l~s~~~d----------g~i~iwd~~~~~~~~~~~~  162 (424)
                       +..|.++++.  .......+..     |...+..++|+|||+.|++++.+          ..|++||+.+....     
T Consensus       100 ~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-----  174 (662)
T 3azo_A          100 GDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAA-----  174 (662)
T ss_dssp             TTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTT-----
T ss_pred             CCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccc-----
Confidence             5667777765  2033444544     56678999999999999988876          58999998651000     


Q ss_pred             cccceEEeec-CCcCceeEEEEEEcCceeEEEEEeCC--------CcEEEEecC-CC---ceeeeee-cCcceeEEEECC
Q 014475          163 ASHLYLHSFT-GHTLRITDIVIGYGGVSATIVSASED--------RTCKVWSLL-KG---RLLRNIV-FPSVIDAIALDP  228 (424)
Q Consensus       163 ~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~l~~~~~d--------~~v~iwd~~-~~---~~~~~~~-~~~~i~~~~~~~  228 (424)
                      ... ....+. .+...+..++|+|++  +.|+.++.+        ..|.+||+. ++   +...... +...+..+.|+|
T Consensus       175 ~~~-~~~~l~~~~~~~~~~~~~SpDG--~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~sp  251 (662)
T 3azo_A          175 DRS-AVRELSDDAHRFVTGPRLSPDG--RQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAP  251 (662)
T ss_dssp             CGG-GSEESSCSCSSEECCCEECTTS--SEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECT
T ss_pred             cCC-ceeEEEecCCCcccCceECCCC--CEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECC
Confidence            001 112333 455678889999999  788877754        379999998 56   3333333 367899999999


Q ss_pred             CCCEEEEEeCCC--cEEEEEcCCCCCCCCCcCceeeeeecccCcC--------eEEEEecC-CCEEEEeCCCCcEEEE--
Q 014475          229 AEHVFYAGSRDG--SIYIAALNAESPSTSSYGMHIIGSLSDHSKA--------VTCLAYST-GDLLISGSEDGMVRVW--  295 (424)
Q Consensus       229 ~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~--------i~~~~~~~-~~~l~t~~~dg~i~iw--  295 (424)
                      +|++++++..++  .|++||..++.         .......+...        +..++|+| +.++++++. +.++||  
T Consensus       252 dg~l~~~~~~~~~~~l~~~~~~~~~---------~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~  321 (662)
T 3azo_A          252 DGSLIVATDRTGWWNLHRVDPATGA---------ATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGIL  321 (662)
T ss_dssp             TSCEEEEECTTSSCEEEEECTTTCC---------EEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEE
T ss_pred             CCeEEEEECCCCCeEEEEEECCCCc---------eeecccccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEE
Confidence            999888888888  55555554432         11111122111        56788988 889999988 999999  


Q ss_pred             eCCCCcEEEEEeccCCCeeEE-EEEecCceeeeccCCCc--eeeccCCCCC
Q 014475          296 DPITHNIVRMFRLAKGPVNNI-LVVRRPLYLNLGSFSNP--HTSSRRHGSQ  343 (424)
Q Consensus       296 d~~~~~~~~~~~~~~~~v~~l-~~s~~~~~l~~~~~d~~--i~iw~~~~~~  343 (424)
                      |+.+++ +..+..|.+.+..+ +++.+...+++++.+..  +..|++.+++
T Consensus       322 d~~~~~-~~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~d~~~g~  371 (662)
T 3azo_A          322 DPESGE-LVDAAGPWTEWAATLTVSGTRAVGVAASPRTAYEVVELDTVTGR  371 (662)
T ss_dssp             ETTTTE-EEECCSSCCEEEEEEEEETTEEEEEEEETTEEEEEEEEETTTCC
T ss_pred             ECCCCc-EEEecCCCCeEEEEEecCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence            655554 67787787777766 44333333445555554  4444554443

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.80  E-value=3.3e-17  Score=146.93  Aligned_cols=251  Identities=13%  Similarity=0.098  Sum_probs=169.6

Q ss_pred             CCCccccCC--------CCceeEEEEECCCCceeeeecCCCCeeEEEECCCCCEEEEecCC---C--cEEEEEccCccee
Q 014475           49 SSQLREQPS--------ASSGSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQS---G--DIYMWEVASGRLL  115 (424)
Q Consensus        49 ~~~~l~~~~--------~~~g~i~vwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---g--~v~iwd~~~~~~~  115 (424)
                      +|+.++...        ..++.|.+||+.+++....    ..+..++|||||++|+.++.+   +  .|.+|++.+++..
T Consensus        23 dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l----~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~   98 (347)
T 2gop_A           23 KGELVAYVLTKANLKDNKYENTIVIENLKNNARRFI----ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSK   98 (347)
T ss_dssp             ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEEE----ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEE
T ss_pred             CCcEEEEEEeecCcccCCccceEEEEeCCCCceEEc----ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceE
Confidence            777766542        1137899999988765433    678899999999999887654   2  3888898887765


Q ss_pred             eeeccccCCeEEEEEccCCcEEEEeeCC---------------------------CcEEEEeCCcccchhcccccccceE
Q 014475          116 KKWHAHYRAVTCLVFSEDGSFLISGSED---------------------------GCVRIWSLLTVFEECESQRASHLYL  168 (424)
Q Consensus       116 ~~~~~~~~~i~~~~~~~~~~~l~s~~~d---------------------------g~i~iwd~~~~~~~~~~~~~~~~~~  168 (424)
                      .....+ . +..+.|+|+++.|+.++.+                           ..|.+||+.++.           .+
T Consensus        99 ~l~~~~-~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~-----------~~  165 (347)
T 2gop_A           99 KILEAK-N-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEE-----------VI  165 (347)
T ss_dssp             EEEEES-E-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTE-----------EE
T ss_pred             EEEcCC-C-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCe-----------EE
Confidence            544433 3 9999999999998887642                           568899986521           11


Q ss_pred             EeecCCcCceeEEEEEEcCceeEEEEEeCCC-------cEEEEecCCCceeeeeecCcceeEEEECCCCCEEEEEeCC--
Q 014475          169 HSFTGHTLRITDIVIGYGGVSATIVSASEDR-------TCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRD--  239 (424)
Q Consensus       169 ~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~-------~v~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d--  239 (424)
                      ..+.. . .+..+.|+|++   +++++..++       ...+|.+.+++......+ ..+..  ++|+|+.++.++.+  
T Consensus       166 ~~l~~-~-~~~~~~~spdg---~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~l~~~-~~~~~--~spdg~~l~~~~~~~~  237 (347)
T 2gop_A          166 EEFEK-P-RFSSGIWHRDK---IVVNVPHREIIPQYFKFWDIYIWEDGKEEKMFEK-VSFYA--VDSDGERILLYGKPEK  237 (347)
T ss_dssp             EEEEE-E-TTCEEEEETTE---EEEEEECCCSSCCSSCCEEEEEEETTEEEEEEEE-ESEEE--EEECSSCEEEEECCSS
T ss_pred             eeecC-C-CcccccCCCCe---EEEEEecccccccccccccEEEeCCCceEEeccC-cceee--ECCCCCEEEEEEcccc
Confidence            22222 2 67788999875   556665442       345554445544333233 44444  38999988877754  


Q ss_pred             ------CcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEE-EEecCCCEEEEeCCCCcEEEEeCCCCcEEEEEeccCCC
Q 014475          240 ------GSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTC-LAYSTGDLLISGSEDGMVRVWDPITHNIVRMFRLAKGP  312 (424)
Q Consensus       240 ------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~  312 (424)
                            ..|++||  ++         +.......|...+.. +.|+ +.++++++.++.++|| +.+++... +..+.+.
T Consensus       238 ~~~~~~~~l~~~d--~~---------~~~~l~~~~~~~~~~~~~~s-dg~~~~~~~~~~~~l~-~~~g~~~~-~~~~~~~  303 (347)
T 2gop_A          238 KYMSEHNKLYIYD--GK---------EVMGILDEVDRGVGQAKIKD-GKVYFTLFEEGSVNLY-IWDGEIKP-IAKGRHW  303 (347)
T ss_dssp             SCCCSSCEEEEEC--SS---------CEEESSTTCCSEEEEEEEET-TEEEEEEEETTEEEEE-EESSSEEE-EECSSSE
T ss_pred             CCccccceEEEEC--CC---------ceEeccccCCcccCCccEEc-CcEEEEEecCCcEEEE-EcCCceEE-EecCCCe
Confidence                  3577777  32         223334456677876 8898 4488888999999999 88666544 4445788


Q ss_pred             eeEEEEEecCceeeeccCCCce-eeccCC
Q 014475          313 VNNILVVRRPLYLNLGSFSNPH-TSSRRH  340 (424)
Q Consensus       313 v~~l~~s~~~~~l~~~~~d~~i-~iw~~~  340 (424)
                      |.+++|+|  .++++++.++.. .+|.+.
T Consensus       304 v~~~~~s~--~~~~~~~~~~~~~~l~~~~  330 (347)
T 2gop_A          304 IMGFDVDE--IVVYLKETATRLRELFTWD  330 (347)
T ss_dssp             EEEEEESS--SEEEEEECSSSCCEEEEES
T ss_pred             EEeeeeeC--cEEEEEcCCCChHHheEeC
Confidence            99999999  566676666654 777765

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.79  E-value=3.7e-17  Score=146.56  Aligned_cols=251  Identities=7%  Similarity=0.062  Sum_probs=170.8

Q ss_pred             CCceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCCC----ceeEEEEECCCCceeeeecCCCCeeEEE
Q 014475           12 DTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSAS----SGSILYWSWSKPQVEVKSLPAEPIKPIA   87 (424)
Q Consensus        12 dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~----~g~i~vwd~~~~~~~~~~~~~~~v~~~~   87 (424)
                      ++.|.+||+.+++.. .+       ..+..+.  |+|+|+.|+.++.+    ...|.+|++.+++......... +..++
T Consensus        42 ~~~l~~~d~~~~~~~-~l-------~~~~~~~--~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~-~~~~~  110 (347)
T 2gop_A           42 ENTIVIENLKNNARR-FI-------ENATMPR--ISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAKN-IRSLE  110 (347)
T ss_dssp             EEEEEEEETTTCCEE-EE-------ESCEEEE--ECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEESE-EEEEE
T ss_pred             cceEEEEeCCCCceE-Ec-------ccCCCeE--ECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCCC-cccee
Confidence            678999999988754 33       2356666  99999999987643    1358888988876554443444 99999


Q ss_pred             ECCCCCEEEEecCC---------------------------CcEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEe
Q 014475           88 ANSHGTYIAGGGQS---------------------------GDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISG  140 (424)
Q Consensus        88 ~s~~~~~l~~~~~d---------------------------g~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~  140 (424)
                      |+|||+.|+.++.+                           ..|++||+.+++.+..+.. . .+..+.|+|++ .++++
T Consensus       111 wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~spdg-~~~~~  187 (347)
T 2gop_A          111 WNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHRDK-IVVNV  187 (347)
T ss_dssp             ECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEETTE-EEEEE
T ss_pred             ECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecC-C-CcccccCCCCe-EEEEE
Confidence            99999999887632                           5699999988876455544 3 78899999999 77777


Q ss_pred             eCCC-------cEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCC--------CcEEEEe
Q 014475          141 SEDG-------CVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASED--------RTCKVWS  205 (424)
Q Consensus       141 ~~dg-------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d--------~~v~iwd  205 (424)
                      ..++       ...+|.+.++         .   ...+..+ ..+..+  +|++  +.|+.++.+        ..|.+||
T Consensus       188 ~~~~~~~~~~~~~~l~~~d~~---------~---~~~l~~~-~~~~~~--spdg--~~l~~~~~~~~~~~~~~~~l~~~d  250 (347)
T 2gop_A          188 PHREIIPQYFKFWDIYIWEDG---------K---EEKMFEK-VSFYAV--DSDG--ERILLYGKPEKKYMSEHNKLYIYD  250 (347)
T ss_dssp             ECCCSSCCSSCCEEEEEEETT---------E---EEEEEEE-ESEEEE--EECS--SCEEEEECCSSSCCCSSCEEEEEC
T ss_pred             ecccccccccccccEEEeCCC---------c---eEEeccC-cceeeE--CCCC--CEEEEEEccccCCccccceEEEEC
Confidence            6542       3455544221         1   1122222 344433  8888  677666643        3688888


Q ss_pred             cCCCceeeeee-cCcceeE-EEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecCCCEE
Q 014475          206 LLKGRLLRNIV-FPSVIDA-IALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTGDLL  283 (424)
Q Consensus       206 ~~~~~~~~~~~-~~~~i~~-~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l  283 (424)
                        +++...... +...+.. +.|+ ++ ++++++.++.+++| +.++         +. ..+..+...|.+++|+| .++
T Consensus       251 --~~~~~~l~~~~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g---------~~-~~~~~~~~~v~~~~~s~-~~~  314 (347)
T 2gop_A          251 --GKEVMGILDEVDRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IWDG---------EI-KPIAKGRHWIMGFDVDE-IVV  314 (347)
T ss_dssp             --SSCEEESSTTCCSEEEEEEEET-TE-EEEEEEETTEEEEE-EESS---------SE-EEEECSSSEEEEEEESS-SEE
T ss_pred             --CCceEeccccCCcccCCccEEc-Cc-EEEEEecCCcEEEE-EcCC---------ce-EEEecCCCeEEeeeeeC-cEE
Confidence              555443333 4567776 8999 88 88899999999999 8732         22 23334577899999999 888


Q ss_pred             EEeCCCCcE-EEEeCCCCcEEEEEeccCC
Q 014475          284 ISGSEDGMV-RVWDPITHNIVRMFRLAKG  311 (424)
Q Consensus       284 ~t~~~dg~i-~iwd~~~~~~~~~~~~~~~  311 (424)
                      ++++.++.. .+|.+. ++ ...+..|+.
T Consensus       315 ~~~~~~~~~~~l~~~~-g~-~~~lt~~n~  341 (347)
T 2gop_A          315 YLKETATRLRELFTWD-GE-EKQLTDYND  341 (347)
T ss_dssp             EEEECSSSCCEEEEES-SS-EEECCCTTS
T ss_pred             EEEcCCCChHHheEeC-Cc-EEEeccccH
Confidence            888777664 777766 54 444555544

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.79  E-value=1.3e-16  Score=138.98  Aligned_cols=237  Identities=14%  Similarity=0.167  Sum_probs=170.6

Q ss_pred             CCCceEEecceeecCCCccccCCCCceeEEEEECCCCceeeee------cCCCCeeEEEE-CCCCCEEEEecC-CCcEEE
Q 014475           35 PPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKS------LPAEPIKPIAA-NSHGTYIAGGGQ-SGDIYM  106 (424)
Q Consensus        35 ~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~~------~~~~~v~~~~~-s~~~~~l~~~~~-dg~v~i  106 (424)
                      +......++  ++++++++++...+ +.|.+||.+........      .+...+..+++ .++++++++... ++.|.+
T Consensus        28 ~~~~p~~v~--~~~~g~l~v~~~~~-~~i~~~d~~g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~  104 (286)
T 1q7f_A           28 QFTEPSGVA--VNAQNDIIVADTNN-HRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQI  104 (286)
T ss_dssp             CBSCEEEEE--ECTTCCEEEEEGGG-TEEEEECTTSCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEE
T ss_pred             ccCCCceEE--ECCCCCEEEEECCC-CEEEEECCCCcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEE
Confidence            345567777  99999877776665 89999998744322211      12356889999 578877777643 789999


Q ss_pred             EEccCcceeeeec-cccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEee--cCCcCceeEEEE
Q 014475          107 WEVASGRLLKKWH-AHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSF--TGHTLRITDIVI  183 (424)
Q Consensus       107 wd~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~~~~  183 (424)
                      || .+++.+..+. .+...+.+++++|+++++++...++.|.+||...            .....+  ..+...+..+++
T Consensus       105 ~d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g------------~~~~~~~~~~~~~~p~~i~~  171 (286)
T 1q7f_A          105 YN-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNG------------NVLHKFGCSKHLEFPNGVVV  171 (286)
T ss_dssp             EC-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTS------------CEEEEEECTTTCSSEEEEEE
T ss_pred             EC-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCCC------------CEEEEeCCCCccCCcEEEEE
Confidence            99 5677666663 3446789999999999888877888999999642            112222  234456889999


Q ss_pred             EEcCceeEEEEEeCCCcEEEEecCCCceeeeeecC---cceeEEEECCCCCEEEEEeCCC-cEEEEEcCCCCCCCCCcCc
Q 014475          184 GYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFP---SVIDAIALDPAEHVFYAGSRDG-SIYIAALNAESPSTSSYGM  259 (424)
Q Consensus       184 ~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~---~~i~~~~~~~~~~~l~~~~~dg-~i~i~d~~~~~~~~~~~~~  259 (424)
                      ++++  +++++...++.|++||. +++.+..+...   ..+..++++|+++++++...++ .|.+||...          
T Consensus       172 ~~~g--~l~v~~~~~~~i~~~~~-~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~g----------  238 (286)
T 1q7f_A          172 NDKQ--EIFISDNRAHCVKVFNY-EGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQDG----------  238 (286)
T ss_dssp             CSSS--EEEEEEGGGTEEEEEET-TCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTTS----------
T ss_pred             CCCC--CEEEEECCCCEEEEEcC-CCCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCCC----------
Confidence            9987  77777778899999997 45555555432   5688999999999888887776 999999654          


Q ss_pred             eeeeeecccC--cCeEEEEecC-CCEEEEeCCCCcEEEEeCCCCc
Q 014475          260 HIIGSLSDHS--KAVTCLAYST-GDLLISGSEDGMVRVWDPITHN  301 (424)
Q Consensus       260 ~~~~~~~~~~--~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~  301 (424)
                      +.+..+..+.  ..+.+++++| ++++++ +.|+.|++|++....
T Consensus       239 ~~~~~~~~~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~~~  282 (286)
T 1q7f_A          239 QLISALESKVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQLA  282 (286)
T ss_dssp             CEEEEEEESSCCSCEEEEEEETTTEEEEE-ETTTEEEEEECSCCC
T ss_pred             CEEEEEcccCCCCcceeEEECCCCcEEEE-CCCCeEEEEEccccc
Confidence            2233333332  3478999999 776666 569999999986543

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.79  E-value=1.7e-16  Score=140.94  Aligned_cols=279  Identities=8%  Similarity=-0.035  Sum_probs=190.2

Q ss_pred             CCCceEEEeCCCCceEEEeeC---CCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCceeeeecCCCCeeEEE
Q 014475           11 ADTGIGCWDLESGAEQLRYKS---CASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSLPAEPIKPIA   87 (424)
Q Consensus        11 ~dg~i~vwd~~~~~~~~~~~~---~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~~~~~~~v~~~~   87 (424)
                      .+++|.++|.++++....+..   ...-......+.  +. +++..++... ++.|.+||..+.+.............++
T Consensus        15 ~~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~--~~-~~~lyv~~~~-~~~v~viD~~t~~~~~~i~~~~~p~~i~   90 (328)
T 3dsm_A           15 SNATLSYYDPATCEVENEVFYRANGFKLGDVAQSMV--IR-DGIGWIVVNN-SHVIFAIDINTFKEVGRITGFTSPRYIH   90 (328)
T ss_dssp             CCBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEE--EE-TTEEEEEEGG-GTEEEEEETTTCCEEEEEECCSSEEEEE
T ss_pred             CCceEEEEECCCCEEhhhhHhhhcCcccCccceEEE--EE-CCEEEEEEcC-CCEEEEEECcccEEEEEcCCCCCCcEEE
Confidence            389999999999987765421   011112234444  42 3444444443 4999999999888765555567889999


Q ss_pred             ECCCCCEEEEecCCCcEEEEEccCcceeeeecccc-----CCeEEEEEccCCcEEEEee-CCCcEEEEeCCcccchhccc
Q 014475           88 ANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHY-----RAVTCLVFSEDGSFLISGS-EDGCVRIWSLLTVFEECESQ  161 (424)
Q Consensus        88 ~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~-----~~i~~~~~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~  161 (424)
                      ++++++.+++...++.|.+||+.+++....+....     .....+++ .+++.+++.. .++.|.++|+.++.      
T Consensus        91 ~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~-~~~~lyv~~~~~~~~v~viD~~t~~------  163 (328)
T 3dsm_A           91 FLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ-YGKYVYVNCWSYQNRILKIDTETDK------  163 (328)
T ss_dssp             EEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE-ETTEEEEEECTTCCEEEEEETTTTE------
T ss_pred             EeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE-ECCEEEEEcCCCCCEEEEEECCCCe------
Confidence            99998655555478999999999998877665433     14556777 4454444443 48899999997632      


Q ss_pred             ccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCC----------CcEEEEecCCCceeeeeec--CcceeEEEECCC
Q 014475          162 RASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASED----------RTCKVWSLLKGRLLRNIVF--PSVIDAIALDPA  229 (424)
Q Consensus       162 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d----------~~v~iwd~~~~~~~~~~~~--~~~i~~~~~~~~  229 (424)
                           ....+... .....+++++++  ++++++..+          +.|.++|..+++....+..  ......++++|+
T Consensus       164 -----~~~~i~~g-~~p~~i~~~~dG--~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d  235 (328)
T 3dsm_A          164 -----VVDELTIG-IQPTSLVMDKYN--KMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGT  235 (328)
T ss_dssp             -----EEEEEECS-SCBCCCEECTTS--EEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTT
T ss_pred             -----EEEEEEcC-CCccceEEcCCC--CEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecC
Confidence                 22223222 234577888877  666666554          7899999999988877764  346899999999


Q ss_pred             CCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC--CCEEEEe----CCCCcEEEEeCCCCcEE
Q 014475          230 EHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST--GDLLISG----SEDGMVRVWDPITHNIV  303 (424)
Q Consensus       230 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~l~t~----~~dg~i~iwd~~~~~~~  303 (424)
                      ++.++++..  .|.+||..++.....       .....+......++++|  +.++++.    ..++.|.+||.. ++.+
T Consensus       236 ~~~lyv~~~--~v~~~d~~t~~~~~~-------~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~~  305 (328)
T 3dsm_A          236 RDTLYWINN--DIWRMPVEADRVPVR-------PFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKLI  305 (328)
T ss_dssp             SCEEEEESS--SEEEEETTCSSCCSS-------CSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CCEE
T ss_pred             CCEEEEEcc--EEEEEECCCCceeee-------eeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CCEE
Confidence            999988765  899999987653110       11111246688999998  5666666    678999999988 9999


Q ss_pred             EEEeccCCCeeEEEEE
Q 014475          304 RMFRLAKGPVNNILVV  319 (424)
Q Consensus       304 ~~~~~~~~~v~~l~~s  319 (424)
                      .++..-.. -..++|-
T Consensus       306 ~~i~~G~~-P~~~~~~  320 (328)
T 3dsm_A          306 DEFYVGII-PGAFCWK  320 (328)
T ss_dssp             EEEEEEES-EEEEEEE
T ss_pred             EEEEeccC-cceEEEe
Confidence            98874333 2455553

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.79  E-value=4.8e-17  Score=159.95  Aligned_cols=279  Identities=11%  Similarity=0.032  Sum_probs=188.0

Q ss_pred             ecCCCccccCCCCc----eeEEEEECCCCceeeee-------cCCCCeeEEEECCCCCEEEEecCCC-----cEEEEEcc
Q 014475           47 LASSQLREQPSASS----GSILYWSWSKPQVEVKS-------LPAEPIKPIAANSHGTYIAGGGQSG-----DIYMWEVA  110 (424)
Q Consensus        47 ~~~~~~l~~~~~~~----g~i~vwd~~~~~~~~~~-------~~~~~v~~~~~s~~~~~l~~~~~dg-----~v~iwd~~  110 (424)
                      .|+|++++....+.    +.+.+.+...++.....       .+...+..++|||||++||.+..++     .|++||+.
T Consensus        80 ~~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~  159 (710)
T 2xdw_A           80 FKKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVD  159 (710)
T ss_dssp             EEETTEEEEEEECSSCSSCEEEEESSTTSCCEEEECGGGGCTTSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETT
T ss_pred             EEECCEEEEEEEcCCceEEEEEEEcCCCCCcEEEECHHHhccCCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECC
Confidence            36777666543221    23444444333332211       1223588999999999999775533     89999999


Q ss_pred             CcceeeeeccccCCeEEEEEccCCcEEEEeeCCCc----------------EEEEeCCcccchhcccccccceEEeecCC
Q 014475          111 SGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGC----------------VRIWSLLTVFEECESQRASHLYLHSFTGH  174 (424)
Q Consensus       111 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~----------------i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  174 (424)
                      +++.......+ ..+..++|+||++.|+.++.++.                |++|++.++..       ....+.....|
T Consensus       160 tg~~~~~~~~~-~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~-------~~~~v~~~~~~  231 (710)
T 2xdw_A          160 GAKELPDVLER-VKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQS-------EDILCAEFPDE  231 (710)
T ss_dssp             TTEEEEEEEEE-ECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGG-------GCEEEECCTTC
T ss_pred             CCCCCcccccC-cccceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcc-------cceEEeccCCC
Confidence            99876543322 23678999999999999888766                99999966321       11223333345


Q ss_pred             cCceeEEEEEEcCceeEEEEEeC-----CCcEEEEecCC------Cc-eeeeee-cCcceeEEEECCCCCEEEEEeCC--
Q 014475          175 TLRITDIVIGYGGVSATIVSASE-----DRTCKVWSLLK------GR-LLRNIV-FPSVIDAIALDPAEHVFYAGSRD--  239 (424)
Q Consensus       175 ~~~i~~~~~~~~~~~~~l~~~~~-----d~~v~iwd~~~------~~-~~~~~~-~~~~i~~~~~~~~~~~l~~~~~d--  239 (424)
                      ...+..+.|+|++  ++|+.++.     +..|.+||+.+      +. ....+. +...+.. .|+|+|..|+..+..  
T Consensus       232 ~~~~~~~~~SpDg--~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~  308 (710)
T 2xdw_A          232 PKWMGGAELSDDG--RYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHS  308 (710)
T ss_dssp             TTCEEEEEECTTS--CEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTC
T ss_pred             CeEEEEEEEcCCC--CEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCCCCcEEE-EEeccCCEEEEEECCCC
Confidence            5667889999998  67776654     56899999986      43 244444 3344433 588888888776653  


Q ss_pred             --CcEEEEEcCCCCCCCCCcCceeeeeecccCc--CeEEEEecC-CCEEEEeCCCCc--EEEEeCCCCcEEEEEeccCCC
Q 014475          240 --GSIYIAALNAESPSTSSYGMHIIGSLSDHSK--AVTCLAYST-GDLLISGSEDGM--VRVWDPITHNIVRMFRLAKGP  312 (424)
Q Consensus       240 --g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~--~i~~~~~~~-~~~l~t~~~dg~--i~iwd~~~~~~~~~~~~~~~~  312 (424)
                        +.|.+||+.+...       .....+..|..  .+..+.|++ +.++++...|+.  |.+||+.+++.+..+..+.+.
T Consensus       309 ~~~~l~~~d~~~~~~-------~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g~~~~~l~~~~~~  381 (710)
T 2xdw_A          309 PNYRLINIDFTDPEE-------SKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGALLKIFPLEVGS  381 (710)
T ss_dssp             TTCEEEEEETTSCCG-------GGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCCEEEEECCCSSE
T ss_pred             CCCEEEEEeCCCCCc-------ccceeccCCCCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCCCEEEecCCCCce
Confidence              3599999877521       01223334433  678899987 778888888874  667788788888888888888


Q ss_pred             eeEEEEEecCceeee----ccCCCceeeccCCCCC
Q 014475          313 VNNILVVRRPLYLNL----GSFSNPHTSSRRHGSQ  343 (424)
Q Consensus       313 v~~l~~s~~~~~l~~----~~~d~~i~iw~~~~~~  343 (424)
                      +..+.++|++..++.    ....+.+..||+.+++
T Consensus       382 v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~  416 (710)
T 2xdw_A          382 VVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE  416 (710)
T ss_dssp             EEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred             EEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence            999999999876652    3355789999988765

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.78  E-value=1.8e-16  Score=140.93  Aligned_cols=238  Identities=13%  Similarity=0.146  Sum_probs=176.5

Q ss_pred             CCceEEecceeecCCCccccCCCCc-----------------------eeEEEEECCCCceeeeec--CCCCeeEEEECC
Q 014475           36 PHGLACVGQRFLASSQLREQPSASS-----------------------GSILYWSWSKPQVEVKSL--PAEPIKPIAANS   90 (424)
Q Consensus        36 ~~~v~~~~~~~~~~~~~l~~~~~~~-----------------------g~i~vwd~~~~~~~~~~~--~~~~v~~~~~s~   90 (424)
                      ...+..++  ++|+|+++++...+.                       +.|.+||..+++......  +...+..++++|
T Consensus        23 l~~v~~va--~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~  100 (329)
T 3fvz_A           23 PGQVSGVA--LDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDT  100 (329)
T ss_dssp             CSCEEEEE--ECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECT
T ss_pred             cCCceEEE--ECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECC
Confidence            35577788  999998877665541                       379999998777654433  345789999999


Q ss_pred             CCCEEEEecCCCcEEEEEccCcc-eeeee---------ccccCCeEEEEEcc-CCcEEEEee-CCCcEEEEeCCcccchh
Q 014475           91 HGTYIAGGGQSGDIYMWEVASGR-LLKKW---------HAHYRAVTCLVFSE-DGSFLISGS-EDGCVRIWSLLTVFEEC  158 (424)
Q Consensus        91 ~~~~l~~~~~dg~v~iwd~~~~~-~~~~~---------~~~~~~i~~~~~~~-~~~~l~s~~-~dg~i~iwd~~~~~~~~  158 (424)
                      +|+++++...++.|++||..... .+..+         ..+...+..++++| ++.++++.+ .++.|++||....    
T Consensus       101 ~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~~g~----  176 (329)
T 3fvz_A          101 DGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSPSGK----  176 (329)
T ss_dssp             TSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECTTSC----
T ss_pred             CCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcCCCC----
Confidence            99988888888999999975442 44444         24455789999999 788888876 6899999995321    


Q ss_pred             cccccccceEEeec----------CCcCceeEEEEEEc-CceeEEEEEeCCCcEEEEecCCCceeeeee---cCcceeEE
Q 014475          159 ESQRASHLYLHSFT----------GHTLRITDIVIGYG-GVSATIVSASEDRTCKVWSLLKGRLLRNIV---FPSVIDAI  224 (424)
Q Consensus       159 ~~~~~~~~~~~~~~----------~~~~~i~~~~~~~~-~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~---~~~~i~~~  224 (424)
                              .+..+.          ++-.....++++++ +  .++++...++.|++||..+++.+..+.   +...+..+
T Consensus       177 --------~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g--~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~  246 (329)
T 3fvz_A          177 --------FVTQWGEESSGSSPRPGQFSVPHSLALVPHLD--QLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAI  246 (329)
T ss_dssp             --------EEEEECEECCSSSCCTTEESCEEEEEEETTTT--EEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEE
T ss_pred             --------EEEEeccCCCCCCCCCcccCCCcEEEEECCCC--EEEEEECCCCEEEEEECCCCcEEEEEeccccCCCccee
Confidence                    122221          12234788999988 5  788888889999999998888888775   44678889


Q ss_pred             EECCCCCEEEE-------EeCCCcEEEEEcCCCCCCCCCcCceeeeee---cccCcCeEEEEecC-CCEEEEeCCCCcEE
Q 014475          225 ALDPAEHVFYA-------GSRDGSIYIAALNAESPSTSSYGMHIIGSL---SDHSKAVTCLAYST-GDLLISGSEDGMVR  293 (424)
Q Consensus       225 ~~~~~~~~l~~-------~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~---~~~~~~i~~~~~~~-~~~l~t~~~dg~i~  293 (424)
                      +++| +..+.+       ...+..+++|+..++.         .+..+   .++...+..++++| +.++++...++.|+
T Consensus       247 ~~~p-g~~~~~~g~~~v~~~~~~~v~~~~~~~g~---------~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~  316 (329)
T 3fvz_A          247 SYIP-GFLFAVNGKPYFGDQEPVQGFVMNFSSGE---------IIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVW  316 (329)
T ss_dssp             EEET-TEEEEEECCCCTTCSCCCCEEEEETTTCC---------EEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEE
T ss_pred             eecC-CEEEEeCCCEEeccCCCcEEEEEEcCCCe---------EEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEE
Confidence            9999 433333       3344589999998763         34444   35677799999999 88888888999999


Q ss_pred             EEeCCC
Q 014475          294 VWDPIT  299 (424)
Q Consensus       294 iwd~~~  299 (424)
                      +|++..
T Consensus       317 ~~~~~~  322 (329)
T 3fvz_A          317 KFTLTE  322 (329)
T ss_dssp             EEEEEE
T ss_pred             EEeCCc
Confidence            999753

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.78  E-value=1.7e-16  Score=138.94  Aligned_cols=231  Identities=13%  Similarity=0.015  Sum_probs=165.7

Q ss_pred             CCCCeeEEEECCCCC-EEEEecCCCcEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccch
Q 014475           79 PAEPIKPIAANSHGT-YIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEE  157 (424)
Q Consensus        79 ~~~~v~~~~~s~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~  157 (424)
                      ......+++|+|+++ +++++..++.|..||..++  ...+..+...+.+++++|+++++++...++.|.+||..++...
T Consensus        26 ~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~~  103 (296)
T 3e5z_A           26 GFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPGGEWE  103 (296)
T ss_dssp             CCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTTCCEE
T ss_pred             CCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCCCcEE
Confidence            345678999999998 7888888999999999877  5666667788999999999998877777789999998653210


Q ss_pred             hcccccccceEEeecC-CcCceeEEEEEEcCceeEEEE----Ee-------------CCCcEEEEecCCCceeeeeecCc
Q 014475          158 CESQRASHLYLHSFTG-HTLRITDIVIGYGGVSATIVS----AS-------------EDRTCKVWSLLKGRLLRNIVFPS  219 (424)
Q Consensus       158 ~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~l~~----~~-------------~d~~v~iwd~~~~~~~~~~~~~~  219 (424)
                              ........ ....+.++++++++  +++++    ++             ..+.|..++.. ++.........
T Consensus       104 --------~~~~~~~~~~~~~~~~i~~d~~G--~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~  172 (296)
T 3e5z_A          104 --------SIADSFEGKKLNSPNDVCLAPDG--SLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSAPIRDRV  172 (296)
T ss_dssp             --------EEECEETTEECCCCCCEEECTTS--CEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEEEECCCS
T ss_pred             --------EEeeccCCCCCCCCCCEEECCCC--CEEEECCccccccccccccccccCCCcEEEEECCC-CCEEEeecCCC
Confidence                    00111111 12356788998887  67776    32             13456666655 54443334556


Q ss_pred             ceeEEEECCCCCEEEEEeCCCcEEEEEcCC-CCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeC
Q 014475          220 VIDAIALDPAEHVFYAGSRDGSIYIAALNA-ESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDP  297 (424)
Q Consensus       220 ~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~  297 (424)
                      ....++|+|+++.+++.+.++.|++|++.. +...      .....+..+...+..+++++ ++++++.  ++.|.+||.
T Consensus       173 ~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~------~~~~~~~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~  244 (296)
T 3e5z_A          173 KPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETE------YQGVHFTVEPGKTDGLRVDAGGLIWASA--GDGVHVLTP  244 (296)
T ss_dssp             SEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEE------EEEEEECCSSSCCCSEEEBTTSCEEEEE--TTEEEEECT
T ss_pred             CCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCc------CCCeEeeCCCCCCCeEEECCCCCEEEEc--CCeEEEECC
Confidence            678999999999987777789999999973 2100      00111233456677899999 7766666  788999998


Q ss_pred             CCCcEEEEEeccCCCeeEEEEE-ecCceeeeccCCC
Q 014475          298 ITHNIVRMFRLAKGPVNNILVV-RRPLYLNLGSFSN  332 (424)
Q Consensus       298 ~~~~~~~~~~~~~~~v~~l~~s-~~~~~l~~~~~d~  332 (424)
                      . ++.+..+..+.. +++++|. |+++.|.+++.++
T Consensus       245 ~-g~~~~~~~~~~~-~~~~~f~~~d~~~L~v~t~~~  278 (296)
T 3e5z_A          245 D-GDELGRVLTPQT-TSNLCFGGPEGRTLYMTVSTE  278 (296)
T ss_dssp             T-SCEEEEEECSSC-CCEEEEESTTSCEEEEEETTE
T ss_pred             C-CCEEEEEECCCC-ceeEEEECCCCCEEEEEcCCe
Confidence            6 888888887777 9999995 8888888887764

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.77  E-value=6.6e-15  Score=128.77  Aligned_cols=274  Identities=7%  Similarity=-0.021  Sum_probs=190.8

Q ss_pred             CceEEecceeecCCCccccCCCCceeEEEEECCCCceeeee--cCCCCeeEEEECCCCCEEEEecCCCcEEEEEccCcce
Q 014475           37 HGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKS--LPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRL  114 (424)
Q Consensus        37 ~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~  114 (424)
                      ..+.+++  +.++|+..++...+ +.|.+||.. ++.....  .....+.++++++++.++++...++.|..||.. ++.
T Consensus        15 ~~~~~i~--~d~~g~l~v~~~~~-~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~   89 (299)
T 2z2n_A           15 TGPYGIT--VSDKGKVWITQHKA-NMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK-GII   89 (299)
T ss_dssp             CCEEEEE--ECTTSCEEEEETTT-TEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE
T ss_pred             CCccceE--ECCCCCEEEEecCC-CcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC-CcE
Confidence            4567777  88999877766655 899999988 5544322  235679999999999988887778889999976 332


Q ss_pred             e-eeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEE
Q 014475          115 L-KKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIV  193 (424)
Q Consensus       115 ~-~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~  193 (424)
                      . ..+......+..+++.++++++++...++.|..||. ++.          ............+..+++.+++  ...+
T Consensus        90 ~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~----------~~~~~~~~~~~~~~~i~~~~~g--~l~v  156 (299)
T 2z2n_A           90 KEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGK----------IREYELPNKGSYPSFITLGSDN--ALWF  156 (299)
T ss_dssp             EEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCC----------EEEEECSSTTCCEEEEEECTTS--CEEE
T ss_pred             EEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCC----------EEEecCCCCCCCCceEEEcCCC--CEEE
Confidence            1 122234567899999999988887777889999998 311          1111122344567888888776  6666


Q ss_pred             EEeCCCcEEEEecCCCceeee-ee-cCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcC
Q 014475          194 SASEDRTCKVWSLLKGRLLRN-IV-FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKA  271 (424)
Q Consensus       194 ~~~~d~~v~iwd~~~~~~~~~-~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~  271 (424)
                      +...++.|..||. +++.... .. ....+..+++++++.++++...++.|..||. ++.        ........+...
T Consensus       157 ~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~--------~~~~~~~~~~~~  226 (299)
T 2z2n_A          157 TENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGE--------ITEFKIPTPNAR  226 (299)
T ss_dssp             EETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCC--------EEEEECSSTTCC
T ss_pred             EeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCc--------EEEEECCCCCCC
Confidence            6666789999998 6655432 11 3356789999999987776667889999998 442        111122335567


Q ss_pred             eEEEEecC-CCEEEEeCCCCcEEEEeCCCCcEEEEE--eccCCCeeEEEEEecCceeeeccCCCceeeccCCCC
Q 014475          272 VTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMF--RLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGS  342 (424)
Q Consensus       272 i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~~~~~--~~~~~~v~~l~~s~~~~~l~~~~~d~~i~iw~~~~~  342 (424)
                      +.++++++ ++++++...++.|..||. +++ +..+  ..+...+.++++ +++...++.+ .+.+..++..+.
T Consensus       227 ~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~-~~~~~~~~~~~~~~~i~~-~~g~l~v~~~-~~~l~~~~~~~~  296 (299)
T 2z2n_A          227 PHAITAGAGIDLWFTEWGANKIGRLTS-NNI-IEEYPIQIKSAEPHGICF-DGETIWFAME-CDKIGKLTLIKD  296 (299)
T ss_dssp             EEEEEECSTTCEEEEETTTTEEEEEET-TTE-EEEEECSSSSCCEEEEEE-CSSCEEEEET-TTEEEEEEEC--
T ss_pred             ceeEEECCCCCEEEeccCCceEEEECC-CCc-eEEEeCCCCCCccceEEe-cCCCEEEEec-CCcEEEEEcCcc
Confidence            89999998 787777767889999998 454 3333  234467899999 8888777655 455666665543

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.77  E-value=2.5e-17  Score=161.49  Aligned_cols=279  Identities=10%  Similarity=-0.012  Sum_probs=186.2

Q ss_pred             eecCCCccccCCCCc----eeEEEEECCCCceeeee-------cCCCCeeEEEECCCCCEEE-----EecCCCcEEEEEc
Q 014475           46 FLASSQLREQPSASS----GSILYWSWSKPQVEVKS-------LPAEPIKPIAANSHGTYIA-----GGGQSGDIYMWEV  109 (424)
Q Consensus        46 ~~~~~~~l~~~~~~~----g~i~vwd~~~~~~~~~~-------~~~~~v~~~~~s~~~~~l~-----~~~~dg~v~iwd~  109 (424)
                      ..|+|++++....+.    +.|.+.+...++.....       .|...+..++|||||++||     .|+.+..|++||+
T Consensus        75 p~~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl  154 (695)
T 2bkl_A           75 PSRRNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDV  154 (695)
T ss_dssp             CEEETTEEEEEEECTTCSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEET
T ss_pred             CEEECCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEEC
Confidence            457788777665442    23444444444333222       1334689999999999999     4445578999999


Q ss_pred             cCcceeeeeccccCCe--EEEEEccCCcEEEEeeCCCc-------------EEEEeCCcccchhcccccccceEEeecCC
Q 014475          110 ASGRLLKKWHAHYRAV--TCLVFSEDGSFLISGSEDGC-------------VRIWSLLTVFEECESQRASHLYLHSFTGH  174 (424)
Q Consensus       110 ~~~~~~~~~~~~~~~i--~~~~~~~~~~~l~s~~~dg~-------------i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  174 (424)
                      .+++.+..  .+...+  ..++|+|||+.|+.++.|..             |++|++.++..       ....+.....+
T Consensus       155 ~tg~~~~~--~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~-------~~~lv~~~~~~  225 (695)
T 2bkl_A          155 DSGEWSKV--DVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPS-------KDTVVHERTGD  225 (695)
T ss_dssp             TTCCBCSS--CCBSCCTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGG-------GCEEEECCCCC
T ss_pred             CCCCCcCC--cccCcccccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCch-------hceEEEecCCC
Confidence            99886511  122222  67999999999999988766             99999976321       12234444456


Q ss_pred             cCceeEEEEEEcCceeEEEEEeCCC----cEEEEecCCCceeeeeecCcceeEEEECCCCCEEEEEeC----CCcEEEEE
Q 014475          175 TLRITDIVIGYGGVSATIVSASEDR----TCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSR----DGSIYIAA  246 (424)
Q Consensus       175 ~~~i~~~~~~~~~~~~~l~~~~~d~----~v~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~----dg~i~i~d  246 (424)
                      ...+..+.|+|++  ++|+.++.++    .|.+||..+++......+...+....+ +++. ++..+.    ++.|.+||
T Consensus       226 ~~~~~~~~~SpDG--~~l~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d  301 (695)
T 2bkl_A          226 PTTFLQSDLSRDG--KYLFVYILRGWSENDVYWKRPGEKDFRLLVKGVGAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVD  301 (695)
T ss_dssp             TTCEEEEEECTTS--CCEEEEEEETTTEEEEEEECTTCSSCEEEEECSSCCEEEEE-ETTE-EEEEECTTCTTCEEEEEB
T ss_pred             CEEEEEEEECCCC--CEEEEEEeCCCCceEEEEEcCCCCceEEeecCCCceEEEEe-cCCc-EEEEECCCCCCCEEEEEe
Confidence            6678899999998  6777666555    677777666654444445555666666 5666 554443    57899999


Q ss_pred             cCCCCCCCCCcCceeeeeeccc-CcCeEEEEecCCCEEEEeCCCCcEEEEeCC-CCcEEEEEecc-CCCeeEEEEEecCc
Q 014475          247 LNAESPSTSSYGMHIIGSLSDH-SKAVTCLAYSTGDLLISGSEDGMVRVWDPI-THNIVRMFRLA-KGPVNNILVVRRPL  323 (424)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~l~t~~~dg~i~iwd~~-~~~~~~~~~~~-~~~v~~l~~s~~~~  323 (424)
                      +.++...      .....+..+ ...+..++++.+.++++...|+..+||.+. +++....+..+ .+.+..+.++|++.
T Consensus       302 ~~~~~~~------~~~~l~~~~~~~~l~~~~~~~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~  375 (695)
T 2bkl_A          302 PAKPARA------SWKEIVPEDSSASLLSVSIVGGHLSLEYLKDATSEVRVATLKGKPVRTVQLPGVGAASNLMGLEDLD  375 (695)
T ss_dssp             TTBCSGG------GCEEEECCCSSCEEEEEEEETTEEEEEEEETTEEEEEEEETTCCEEEECCCSSSSEECCCBSCTTCS
T ss_pred             CCCCCcc------CCeEEecCCCCCeEEEEEEECCEEEEEEEECCEEEEEEEeCCCCeeEEecCCCCeEEEEeecCCCCC
Confidence            8765310      011122222 456778888767788888899988888655 46667777655 66788889999998


Q ss_pred             eee----eccCCCceeeccCCCCC
Q 014475          324 YLN----LGSFSNPHTSSRRHGSQ  343 (424)
Q Consensus       324 ~l~----~~~~d~~i~iw~~~~~~  343 (424)
                      .|+    +....+.|++|++.+++
T Consensus       376 ~l~~~~ss~~~P~~v~~~d~~~g~  399 (695)
T 2bkl_A          376 DAYYVFTSFTTPRQIYKTSVSTGK  399 (695)
T ss_dssp             EEEEEEEETTEEEEEEEEETTTCC
T ss_pred             EEEEEEcCCCCCCEEEEEECCCCc
Confidence            777    44556789999988765

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.76  E-value=5.4e-16  Score=152.50  Aligned_cols=246  Identities=9%  Similarity=0.038  Sum_probs=166.9

Q ss_pred             ceEEecceeecCCCccccCCCCce----eEEEEECCCCceeeeecCCCCeeEEEECCCCCEEEEecCCCc----------
Q 014475           38 GLACVGQRFLASSQLREQPSASSG----SILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGD----------  103 (424)
Q Consensus        38 ~v~~~~~~~~~~~~~l~~~~~~~g----~i~vwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~----------  103 (424)
                      .+..++  |+|||++|+.+..++|    .|++||+.+++..........+..++|+|||+.|+.++.++.          
T Consensus       126 ~~~~~~--~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~  203 (710)
T 2xdw_A          126 ALRGYA--FSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETS  203 (710)
T ss_dssp             EEEEEE--ECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEEECSCCEEECTTSSEEEEEECCCCSSCCSSSCCC
T ss_pred             EEEEEE--ECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccCcccceEEEEeCCCEEEEEEECCccccccccccc
Confidence            466667  9999999997755423    899999999876543333334778999999999999887765          


Q ss_pred             ------EEEEEccCccee--e--eeccccCCeEEEEEccCCcEEEEeeC-----CCcEEEEeCCcccchhcccccccceE
Q 014475          104 ------IYMWEVASGRLL--K--KWHAHYRAVTCLVFSEDGSFLISGSE-----DGCVRIWSLLTVFEECESQRASHLYL  168 (424)
Q Consensus       104 ------v~iwd~~~~~~~--~--~~~~~~~~i~~~~~~~~~~~l~s~~~-----dg~i~iwd~~~~~~~~~~~~~~~~~~  168 (424)
                            |++|++.++...  .  ....|...+..+.|+|||++|+.++.     +..|.+||+.+.....    ......
T Consensus       204 ~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~----~~~~~~  279 (710)
T 2xdw_A          204 TNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGI----TGILKW  279 (710)
T ss_dssp             CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSS----CSSCCC
T ss_pred             cCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECccccccc----CCccce
Confidence                  999999887532  2  22335566889999999999887765     5689999985410000    001122


Q ss_pred             EeecCCcCceeEEEEEEcCceeEEEEEeCC----CcEEEEecCCCce--eeee-ecC--cceeEEEECCCCCEEEEEeCC
Q 014475          169 HSFTGHTLRITDIVIGYGGVSATIVSASED----RTCKVWSLLKGRL--LRNI-VFP--SVIDAIALDPAEHVFYAGSRD  239 (424)
Q Consensus       169 ~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d----~~v~iwd~~~~~~--~~~~-~~~--~~i~~~~~~~~~~~l~~~~~d  239 (424)
                      ..+..+...+.. .|++++  ..|+..+..    +.|.+||+.++..  ...+ .+.  ..+..++|++++.++++...+
T Consensus       280 ~~l~~~~~~~~~-~~s~dg--~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~  356 (710)
T 2xdw_A          280 VKLIDNFEGEYD-YVTNEG--TVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHD  356 (710)
T ss_dssp             EEEECSSSSCEE-EEEEET--TEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEET
T ss_pred             EEeeCCCCcEEE-EEeccC--CEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEEEC
Confidence            334445555544 477877  455544432    3699999987642  2333 333  368889998888888888888


Q ss_pred             Cc--EEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEE-Ee---CCCCcEEEEeCCCCc
Q 014475          240 GS--IYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLI-SG---SEDGMVRVWDPITHN  301 (424)
Q Consensus       240 g~--i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~-t~---~~dg~i~iwd~~~~~  301 (424)
                      +.  |++|++.++         .....+..+...+..+.++| ++.++ +.   ...+.|..||+.+++
T Consensus       357 g~~~l~~~~~~~g---------~~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~  416 (710)
T 2xdw_A          357 VKNTLQLHDLATG---------ALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE  416 (710)
T ss_dssp             TEEEEEEEETTTC---------CEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred             CEEEEEEEECCCC---------CEEEecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence            85  556666444         33445556677888899998 65554 32   245789999998877

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.75  E-value=1.3e-15  Score=135.19  Aligned_cols=254  Identities=8%  Similarity=-0.003  Sum_probs=181.0

Q ss_pred             ceeEEEEECCCCceeeee-------cCCCCeeEEEECCCCCEEEEecCCCcEEEEEccCcceeeeeccccCCeEEEEEcc
Q 014475           60 SGSILYWSWSKPQVEVKS-------LPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSE  132 (424)
Q Consensus        60 ~g~i~vwd~~~~~~~~~~-------~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~  132 (424)
                      ++.|.++|.++++.....       ........+.+. +++.+++...++.|.+||..+++.+.++. .......+++++
T Consensus        16 ~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~-~~~~p~~i~~~~   93 (328)
T 3dsm_A           16 NATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRIT-GFTSPRYIHFLS   93 (328)
T ss_dssp             CBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEE-CCSSEEEEEEEE
T ss_pred             CceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcC-CCCCCcEEEEeC
Confidence            389999999988764322       122456778875 45556666667899999999999988885 446789999998


Q ss_pred             CCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCc-----CceeEEEEEEcCceeEEEEEe-CCCcEEEEec
Q 014475          133 DGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHT-----LRITDIVIGYGGVSATIVSAS-EDRTCKVWSL  206 (424)
Q Consensus       133 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-----~~i~~~~~~~~~~~~~l~~~~-~d~~v~iwd~  206 (424)
                      +++.+++...++.|.+||..++.           ....+....     .....+++ .++  ..+++.. .++.|.++|+
T Consensus        94 ~g~lyv~~~~~~~v~~iD~~t~~-----------~~~~i~~g~~~~~~~~p~~i~~-~~~--~lyv~~~~~~~~v~viD~  159 (328)
T 3dsm_A           94 DEKAYVTQIWDYRIFIINPKTYE-----------ITGYIECPDMDMESGSTEQMVQ-YGK--YVYVNCWSYQNRILKIDT  159 (328)
T ss_dssp             TTEEEEEEBSCSEEEEEETTTTE-----------EEEEEECTTCCTTTCBCCCEEE-ETT--EEEEEECTTCCEEEEEET
T ss_pred             CCeEEEEECCCCeEEEEECCCCe-----------EEEEEEcCCccccCCCcceEEE-ECC--EEEEEcCCCCCEEEEEEC
Confidence            88655555478999999996632           222222111     24456777 343  4444444 4889999999


Q ss_pred             CCCceeeeeecCcceeEEEECCCCCEEEEEeCC----------CcEEEEEcCCCCCCCCCcCceeeeeeccc-CcCeEEE
Q 014475          207 LKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRD----------GSIYIAALNAESPSTSSYGMHIIGSLSDH-SKAVTCL  275 (424)
Q Consensus       207 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d----------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~  275 (424)
                      .+++....+........++++|+|++++++..+          +.|.++|..+.         +....+... ......+
T Consensus       160 ~t~~~~~~i~~g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~---------~v~~~~~~~~g~~p~~l  230 (328)
T 3dsm_A          160 ETDKVVDELTIGIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETF---------TVEKQFKFKLGDWPSEV  230 (328)
T ss_dssp             TTTEEEEEEECSSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTT---------EEEEEEECCTTCCCEEE
T ss_pred             CCCeEEEEEEcCCCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCC---------eEEEEEecCCCCCceeE
Confidence            999988888866677889999999877766554          78999999875         333333321 2468899


Q ss_pred             EecC-CCEEEEeCCCCcEEEEeCCCCcEEEE--EeccCCCeeEEEEEe-cCceeeec----cCCCceeeccCC
Q 014475          276 AYST-GDLLISGSEDGMVRVWDPITHNIVRM--FRLAKGPVNNILVVR-RPLYLNLG----SFSNPHTSSRRH  340 (424)
Q Consensus       276 ~~~~-~~~l~t~~~dg~i~iwd~~~~~~~~~--~~~~~~~v~~l~~s~-~~~~l~~~----~~d~~i~iw~~~  340 (424)
                      +++| ++.|+++..  .|.+||..+++....  +.........++++| ++...++.    ..++.|.+|+..
T Consensus       231 a~~~d~~~lyv~~~--~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~  301 (328)
T 3dsm_A          231 QLNGTRDTLYWINN--DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ  301 (328)
T ss_dssp             EECTTSCEEEEESS--SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT
T ss_pred             EEecCCCEEEEEcc--EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC
Confidence            9999 888877765  899999998876421  221235678999999 45555665    678999999988

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.75  E-value=3.3e-17  Score=149.64  Aligned_cols=236  Identities=8%  Similarity=-0.052  Sum_probs=157.3

Q ss_pred             eeEEEECCCCCEEEEecCC---CcEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhc
Q 014475           83 IKPIAANSHGTYIAGGGQS---GDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECE  159 (424)
Q Consensus        83 v~~~~~s~~~~~l~~~~~d---g~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~  159 (424)
                      +..++|+|||++|+.....   ..|.+||+.+++.......+......+.|+|+++.|+.++.++.|++||+.++..   
T Consensus        38 ~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~---  114 (396)
T 3c5m_A           38 FYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDERAFFYVKNELNLMKVDLETLEE---  114 (396)
T ss_dssp             TTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCCE---
T ss_pred             eecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCCCEEEEEEcCCcEEEEECCCCCc---
Confidence            6788999999998876442   4688899988876544443333333478999999999999999999999966321   


Q ss_pred             ccccccceEEeecCCcCceeE-------------------EEEEEcCceeEEEEE-----eCCCcEEEEecCCCceeeee
Q 014475          160 SQRASHLYLHSFTGHTLRITD-------------------IVIGYGGVSATIVSA-----SEDRTCKVWSLLKGRLLRNI  215 (424)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~i~~-------------------~~~~~~~~~~~l~~~-----~~d~~v~iwd~~~~~~~~~~  215 (424)
                              ......+......                   ..++|++  +.++..     ..+..|.+||+.+++.....
T Consensus       115 --------~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg--~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~  184 (396)
T 3c5m_A          115 --------QVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLT--SWEKFAEFYHTNPTCRLIKVDIETGELEVIH  184 (396)
T ss_dssp             --------EEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCC--SHHHHHHHHHTCCCEEEEEEETTTCCEEEEE
T ss_pred             --------EEEEecccccCCCCCEEEeccCCccccccccccccCCCC--cceeeeeeccCCCcceEEEEECCCCcEEeec
Confidence                    1111112111111                   1234444  333322     35568999999988876666


Q ss_pred             ecCcceeEEEECC-CCCEEEEEeCC------CcEEEEEcCCCCCCCCCcCceeeeeeccc--CcCeEEEEecC-CCEEEE
Q 014475          216 VFPSVIDAIALDP-AEHVFYAGSRD------GSIYIAALNAESPSTSSYGMHIIGSLSDH--SKAVTCLAYST-GDLLIS  285 (424)
Q Consensus       216 ~~~~~i~~~~~~~-~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~--~~~i~~~~~~~-~~~l~t  285 (424)
                      .+...+..+.|+| ++..++..+.+      ..|.+||+....          ...+..+  ...+..++|+| ++.|+.
T Consensus       185 ~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~----------~~~l~~~~~~~~~~~~~~spdg~~l~~  254 (396)
T 3c5m_A          185 QDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSN----------VRKIKEHAEGESCTHEFWIPDGSAMAY  254 (396)
T ss_dssp             EESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCC----------CEESSCCCTTEEEEEEEECTTSSCEEE
T ss_pred             cCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCc----------eeEeeccCCCccccceEECCCCCEEEE
Confidence            6777889999999 78877766543      368888886542          1122222  23578899999 887776


Q ss_pred             eCCC-----CcEEEEeCCCCcEEEEEeccCCCeeEEEEEe-cCceeeecc----------------CCCceeeccCCCCC
Q 014475          286 GSED-----GMVRVWDPITHNIVRMFRLAKGPVNNILVVR-RPLYLNLGS----------------FSNPHTSSRRHGSQ  343 (424)
Q Consensus       286 ~~~d-----g~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~-~~~~l~~~~----------------~d~~i~iw~~~~~~  343 (424)
                      ++.+     +.|++||+.+++....... .+ .. +.|+| +|+++++++                .+..|++|++.+++
T Consensus       255 ~~~~~~~~~~~l~~~d~~~g~~~~l~~~-~~-~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~  331 (396)
T 3c5m_A          255 VSYFKGQTDRVIYKANPETLENEEVMVM-PP-CS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKS  331 (396)
T ss_dssp             EEEETTTCCEEEEEECTTTCCEEEEEEC-CS-EE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTB
T ss_pred             EecCCCCccceEEEEECCCCCeEEeeeC-CC-CC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCc
Confidence            6543     4499999998875443322 22 33 89999 999888754                34679999988765


Q ss_pred             C
Q 014475          344 L  344 (424)
Q Consensus       344 ~  344 (424)
                      .
T Consensus       332 ~  332 (396)
T 3c5m_A          332 A  332 (396)
T ss_dssp             C
T ss_pred             e
Confidence            4

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.75  E-value=4e-15  Score=140.56  Aligned_cols=271  Identities=13%  Similarity=0.080  Sum_probs=193.2

Q ss_pred             cCCCccccCCCCceeEEEEECCCCceeeeecCCCCeeEEEECCCCCEEEEecCCCcEEEEEcc--CcceeeeeccccCCe
Q 014475           48 ASSQLREQPSASSGSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVA--SGRLLKKWHAHYRAV  125 (424)
Q Consensus        48 ~~~~~l~~~~~~~g~i~vwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~--~~~~~~~~~~~~~~i  125 (424)
                      +.+..+++... ++.|.++|..+++..........+..+.|+|||+++++++.++.|.+||+.  +++.+..+.... ..
T Consensus       165 ~~~~~~V~~~~-~~~V~viD~~t~~v~~~i~~g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~-~P  242 (567)
T 1qks_A          165 LENLFSVTLRD-AGQIALIDGSTYEIKTVLDTGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGS-EA  242 (567)
T ss_dssp             GGGEEEEEETT-TTEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCS-EE
T ss_pred             CCceEEEEeCC-CCeEEEEECCCCeEEEEEeCCCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCC-CC
Confidence            43344444444 499999999998887666666678899999999999999999999999995  777777776533 46


Q ss_pred             EEEEEc----cCCcEEEEeeC-CCcEEEEeCCcccchhcccccccceEEeecC----------C-cCceeEEEEEEcCce
Q 014475          126 TCLVFS----EDGSFLISGSE-DGCVRIWSLLTVFEECESQRASHLYLHSFTG----------H-TLRITDIVIGYGGVS  189 (424)
Q Consensus       126 ~~~~~~----~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~----------~-~~~i~~~~~~~~~~~  189 (424)
                      ..++|+    |+|++++++.. ++.+.++|..+...           +..+..          | ...+..+..++++. 
T Consensus       243 ~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~-----------~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~-  310 (567)
T 1qks_A          243 RSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEP-----------KKIQSTRGMTYDEQEYHPEPRVAAILASHYRP-  310 (567)
T ss_dssp             EEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCE-----------EEEEECCEECTTTCCEESCCCEEEEEECSSSS-
T ss_pred             ceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcE-----------EEEEeccccccccccccCCCceEEEEEcCCCC-
Confidence            799999    69998877665 58999999866322           222111          2 22566777777654 


Q ss_pred             eEEEEEeCCCcEEEEecCCCcee--eeeecCcceeEEEECCCCCEEEEEe-CCCcEEEEEcCCCCCCCCCcCceeeeeec
Q 014475          190 ATIVSASEDRTCKVWSLLKGRLL--RNIVFPSVIDAIALDPAEHVFYAGS-RDGSIYIAALNAESPSTSSYGMHIIGSLS  266 (424)
Q Consensus       190 ~~l~~~~~d~~v~iwd~~~~~~~--~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~  266 (424)
                      .+++....+|.|.++|....+.+  ..+........+.|+|++++++++. .++.|.++|+.+++         .+....
T Consensus       311 ~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~k---------l~~~i~  381 (567)
T 1qks_A          311 EFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGK---------LVAIED  381 (567)
T ss_dssp             EEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTE---------EEEEEE
T ss_pred             EEEEEecCCCeEEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCCc---------EEEEEe
Confidence            66777778899999998765432  3333455677889999999988766 57899999999863         222222


Q ss_pred             -----ccCcCeEEEEecC--CCEEEEeC-CCCcEEEEeCCC-------CcEEEEEeccCCCeeEEEEEecCceeeeccC-
Q 014475          267 -----DHSKAVTCLAYST--GDLLISGS-EDGMVRVWDPIT-------HNIVRMFRLAKGPVNNILVVRRPLYLNLGSF-  330 (424)
Q Consensus       267 -----~~~~~i~~~~~~~--~~~l~t~~-~dg~i~iwd~~~-------~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~-  330 (424)
                           .|.+.-..+ ++|  +..++++. .++.|.++|..+       .+.++++......-..+..+|++++|.+... 
T Consensus       382 vgg~~Phpg~g~~~-~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~  460 (567)
T 1qks_A          382 TGGQTPHPGRGANF-VHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATL  460 (567)
T ss_dssp             CSSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTT
T ss_pred             ccCcCCCCccceee-ECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCC
Confidence                 243222222 466  34445553 568999999988       6788888865444355778999998877542 


Q ss_pred             ------CCceeeccCCCC
Q 014475          331 ------SNPHTSSRRHGS  342 (424)
Q Consensus       331 ------d~~i~iw~~~~~  342 (424)
                            .+.|.++|+.+.
T Consensus       461 ~~~~~~~~~v~v~d~~~~  478 (567)
T 1qks_A          461 NPEAEISGSVAVFDIKAM  478 (567)
T ss_dssp             CSSHHHHTCEEEEEGGGC
T ss_pred             CCCcccCceEEEEECCcc
Confidence                  458999998865

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.74  E-value=1e-15  Score=150.04  Aligned_cols=239  Identities=8%  Similarity=-0.072  Sum_probs=161.8

Q ss_pred             CceEEecceeecCCCccc-----cCCCCceeEEEEECCCCcee-eeecCCCCeeEEEECCCCCEEEEecCCCc-------
Q 014475           37 HGLACVGQRFLASSQLRE-----QPSASSGSILYWSWSKPQVE-VKSLPAEPIKPIAANSHGTYIAGGGQSGD-------  103 (424)
Q Consensus        37 ~~v~~~~~~~~~~~~~l~-----~~~~~~g~i~vwd~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~dg~-------  103 (424)
                      ..+..++  |+|||++||     .++.+ ..|++||+.+++.. ...........++|+|||+.|+.++.+..       
T Consensus       121 ~~~~~~~--~SPDG~~la~~~~~~G~~~-~~i~v~dl~tg~~~~~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~  197 (695)
T 2bkl_A          121 VSLGTWA--VSWDGKKVAFAQKPNAADE-AVLHVIDVDSGEWSKVDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDE  197 (695)
T ss_dssp             EEEEEEE--ECTTSSEEEEEEEETTCSC-CEEEEEETTTCCBCSSCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCGGG
T ss_pred             EEEEEEE--ECCCCCEEEEEECCCCCce-EEEEEEECCCCCCcCCcccCcccccceEEecCCCEEEEEEecCCCCCcccc
Confidence            4566777  999999999     44433 79999999988764 22222222378999999999999888765       


Q ss_pred             ------EEEEEccCcc----eeeeeccccCCeEEEEEccCCcEEEEeeCCC----cEEEEeCCcccchhcccccccceEE
Q 014475          104 ------IYMWEVASGR----LLKKWHAHYRAVTCLVFSEDGSFLISGSEDG----CVRIWSLLTVFEECESQRASHLYLH  169 (424)
Q Consensus       104 ------v~iwd~~~~~----~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg----~i~iwd~~~~~~~~~~~~~~~~~~~  169 (424)
                            |++|++.++.    ++.....|...+..+.|+|||++|+.++.++    .|.+|+..++         .   ..
T Consensus       198 ~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~---------~---~~  265 (695)
T 2bkl_A          198 RPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEK---------D---FR  265 (695)
T ss_dssp             GGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCS---------S---CE
T ss_pred             CCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCC---------c---eE
Confidence                  9999998876    3333344556789999999999998877666    6777765321         1   22


Q ss_pred             eecCCcCceeEEEEEEcCceeEEEEEe---CCCcEEEEecCCCce---eeeeec--CcceeEEEECCCCCEEEEEeCCCc
Q 014475          170 SFTGHTLRITDIVIGYGGVSATIVSAS---EDRTCKVWSLLKGRL---LRNIVF--PSVIDAIALDPAEHVFYAGSRDGS  241 (424)
Q Consensus       170 ~~~~~~~~i~~~~~~~~~~~~~l~~~~---~d~~v~iwd~~~~~~---~~~~~~--~~~i~~~~~~~~~~~l~~~~~dg~  241 (424)
                      .+..+...+....+ +++  .+++.+.   .++.|.+||+.+++.   ...+.+  ...+..++++ ++.++++...|+.
T Consensus       266 ~l~~~~~~~~~~~~-~~g--~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~  341 (695)
T 2bkl_A          266 LLVKGVGAKYEVHA-WKD--RFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDAT  341 (695)
T ss_dssp             EEEECSSCCEEEEE-ETT--EEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTE
T ss_pred             EeecCCCceEEEEe-cCC--cEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCE
Confidence            23334445555555 666  5333333   257899999987653   333332  4467888887 6778888889998


Q ss_pred             EEEEEcCCCCCCCCCcCceeeeeeccc-CcCeEEEEecC-CCEEE----EeCCCCcEEEEeCCCCcE
Q 014475          242 IYIAALNAESPSTSSYGMHIIGSLSDH-SKAVTCLAYST-GDLLI----SGSEDGMVRVWDPITHNI  302 (424)
Q Consensus       242 i~i~d~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~-~~~l~----t~~~dg~i~iwd~~~~~~  302 (424)
                      .++|.++...        .....+..+ ...+..+.++| ++.++    +....++|++||+.+++.
T Consensus       342 ~~l~~~~~~g--------~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~~  400 (695)
T 2bkl_A          342 SEVRVATLKG--------KPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGKS  400 (695)
T ss_dssp             EEEEEEETTC--------CEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCCE
T ss_pred             EEEEEEeCCC--------CeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence            8888765321        223334433 56677788888 66666    333457899999998763

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.74  E-value=8.4e-16  Score=132.51  Aligned_cols=239  Identities=9%  Similarity=-0.047  Sum_probs=167.6

Q ss_pred             CeeEEEECCCCCEEE-EecCCCcEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcc
Q 014475           82 PIKPIAANSHGTYIA-GGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECES  160 (424)
Q Consensus        82 ~v~~~~~s~~~~~l~-~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~  160 (424)
                      ...++++++++++++ +...++.|.+||..++........+...+.+++++++++++++.. ++.|.+||.....     
T Consensus        25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~-----   98 (270)
T 1rwi_B           25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNN-----   98 (270)
T ss_dssp             CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSC-----
T ss_pred             CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCce-----
Confidence            778999999999777 556788999999766543322223445678999999998666655 8899999985421     


Q ss_pred             cccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeee-cCcceeEEEECCCCCEEEEEeCC
Q 014475          161 QRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYAGSRD  239 (424)
Q Consensus       161 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~d  239 (424)
                            ...........+.++++.+++  ..+++...++.|.+|+..+........ ....+..++++|+++++++...+
T Consensus        99 ------~~~~~~~~~~~p~~i~~~~~g--~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~  170 (270)
T 1rwi_B           99 ------QTVLPFDGLNYPEGLAVDTQG--AVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDN  170 (270)
T ss_dssp             ------CEECCCCSCSSEEEEEECTTC--CEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGGG
T ss_pred             ------EeeeecCCcCCCcceEECCCC--CEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECCC
Confidence                  111111223567889998877  677776778899999866544332221 23467889999999977777778


Q ss_pred             CcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCCCcEEEEEeccCCCeeEEEE
Q 014475          240 GSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILV  318 (424)
Q Consensus       240 g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~  318 (424)
                      +.|.+||.....         .......+...+..+++++ +.++++...++.|.+||............+...+.++++
T Consensus       171 ~~i~~~~~~~~~---------~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~  241 (270)
T 1rwi_B          171 NRVVKLEAESNN---------QVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAV  241 (270)
T ss_dssp             TEEEEECTTTCC---------EEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEECCCCSCSCEEEEEE
T ss_pred             CEEEEEecCCCc---------eEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcceeeccCCCCCceeEEE
Confidence            899999987653         1111222336688999999 888888878899999998765443322223356899999


Q ss_pred             EecCceeeeccCCCceeeccCCCCC
Q 014475          319 VRRPLYLNLGSFSNPHTSSRRHGSQ  343 (424)
Q Consensus       319 s~~~~~l~~~~~d~~i~iw~~~~~~  343 (424)
                      +++|+.+++...++.|++++....+
T Consensus       242 ~~~g~l~v~~~~~~~v~~~~~~~~~  266 (270)
T 1rwi_B          242 DSDRTVYVADRGNDRVVKLTSLEHH  266 (270)
T ss_dssp             CTTCCEEEEEGGGTEEEEECCCGGG
T ss_pred             CCCCCEEEEECCCCEEEEEcCCCcc
Confidence            9999988888999999999987544

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.73  E-value=4.4e-15  Score=127.94  Aligned_cols=246  Identities=14%  Similarity=0.055  Sum_probs=175.1

Q ss_pred             CCCccccCCCCceeEEEEECCCCceeeeecCC--CCeeEEEECCCCCEEEEecCCCcEEEEEccCcceeeeecccc-CCe
Q 014475           49 SSQLREQPSASSGSILYWSWSKPQVEVKSLPA--EPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHY-RAV  125 (424)
Q Consensus        49 ~~~~l~~~~~~~g~i~vwd~~~~~~~~~~~~~--~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~-~~i  125 (424)
                      .++.+++++.+ +.|.+||.++++........  ..+.++.++|+|+++++  .++.|..||. +++.+..+..+. ..+
T Consensus         4 ~~~~lv~~~~~-~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilvs--~~~~V~~~d~-~G~~~W~~~~~~~~~~   79 (276)
T 3no2_A            4 PQHLLVGGSGW-NKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILFS--YSKGAKMITR-DGRELWNIAAPAGCEM   79 (276)
T ss_dssp             CCEEEEECTTC-SEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEEE--CBSEEEEECT-TSCEEEEEECCTTCEE
T ss_pred             CCcEEEeeCCC-CEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEEe--CCCCEEEECC-CCCEEEEEcCCCCccc
Confidence            35667777776 99999999899888776543  37899999999998884  4678999998 899988887653 468


Q ss_pred             EEEEEccCCcEEEEeeC-CCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEE
Q 014475          126 TCLVFSEDGSFLISGSE-DGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVW  204 (424)
Q Consensus       126 ~~~~~~~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iw  204 (424)
                      .++.+.++|+.+++.+. ++.+..+|... .........     .....+......+...+++  +++++...++.|..|
T Consensus        80 ~~~~~~~dG~~lv~~~~~~~~v~~vd~~G-k~l~~~~~~-----~~~~~~~~~~~~v~~~~~G--~~lv~~~~~~~v~~~  151 (276)
T 3no2_A           80 QTARILPDGNALVAWCGHPSTILEVNMKG-EVLSKTEFE-----TGIERPHAQFRQINKNKKG--NYLVPLFATSEVREI  151 (276)
T ss_dssp             EEEEECTTSCEEEEEESTTEEEEEECTTS-CEEEEEEEC-----CSCSSGGGSCSCCEECTTS--CEEEEETTTTEEEEE
T ss_pred             cccEECCCCCEEEEecCCCCEEEEEeCCC-CEEEEEecc-----CCCCcccccccCceECCCC--CEEEEecCCCEEEEE
Confidence            89999999999999887 77788787622 110000000     0001222234455666666  899999999999999


Q ss_pred             ecCCCceeeeeecCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeeccc------CcCeEEEEec
Q 014475          205 SLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDH------SKAVTCLAYS  278 (424)
Q Consensus       205 d~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~------~~~i~~~~~~  278 (424)
                      |.. ++.+..+..+..+..+...++++.++++..+++|..+|..+++         .+-.+..+      -..+..++..
T Consensus       152 d~~-G~~~w~~~~~~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~---------~~w~~~~~~~~~~~l~~~~~~~~~  221 (276)
T 3no2_A          152 APN-GQLLNSVKLSGTPFSSAFLDNGDCLVACGDAHCFVQLNLESNR---------IVRRVNANDIEGVQLFFVAQLFPL  221 (276)
T ss_dssp             CTT-SCEEEEEECSSCCCEEEECTTSCEEEECBTTSEEEEECTTTCC---------EEEEEEGGGSBSCCCSEEEEEEEC
T ss_pred             CCC-CCEEEEEECCCCccceeEcCCCCEEEEeCCCCeEEEEeCcCCc---------EEEEecCCCCCCccccccccceEc
Confidence            987 9999998877777788899999999999888899999998764         33333222      1236777777


Q ss_pred             C-CCEEEEeC--CC------CcEEEEeC-CCCcEEEEEeccC--CCeeEE
Q 014475          279 T-GDLLISGS--ED------GMVRVWDP-ITHNIVRMFRLAK--GPVNNI  316 (424)
Q Consensus       279 ~-~~~l~t~~--~d------g~i~iwd~-~~~~~~~~~~~~~--~~v~~l  316 (424)
                      + ++++++..  ..      +..+++++ .+++.+.++..+.  +.+..+
T Consensus       222 ~~G~i~v~~~~g~~~~~~~~~~~~~~~~~~~g~~~W~~~~~~~~~~~~~~  271 (276)
T 3no2_A          222 QNGGLYICNWQGHDREAGKGKHPQLVEIDSEGKVVWQLNDKVKFGMISTI  271 (276)
T ss_dssp             TTSCEEEEEECTTCTTGGGSCCCSEEEECTTSBEEEEECCTTTSCCCCEE
T ss_pred             CCCCEEEEeccCccccccccCCceEEEECCCCCEEEEecCcccccceeee
Confidence            7 77777763  11      23345555 5788877776543  345544

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.72  E-value=5.4e-15  Score=129.31  Aligned_cols=232  Identities=12%  Similarity=0.121  Sum_probs=163.0

Q ss_pred             ceEEecceeecCCC-ccccCCCCceeEEEEECCCCceeeeecCCCCeeEEEECCCCCEEEEecCCCcEEEEEccCcceee
Q 014475           38 GLACVGQRFLASSQ-LREQPSASSGSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLK  116 (424)
Q Consensus        38 ~v~~~~~~~~~~~~-~l~~~~~~~g~i~vwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~  116 (424)
                      ....+.  |+|+++ +++++..+ +.|..|+..++ ......+...+.+++++|+|+++++...++.|.+||..+++...
T Consensus        29 ~~eg~~--~d~~g~~l~~~~~~~-~~i~~~~~~~~-~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~~~  104 (296)
T 3e5z_A           29 WTEGPV--YVPARSAVIFSDVRQ-NRTWAWSDDGQ-LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPGGEWES  104 (296)
T ss_dssp             SEEEEE--EEGGGTEEEEEEGGG-TEEEEEETTSC-EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTTCCEEE
T ss_pred             cccCCe--EeCCCCEEEEEeCCC-CEEEEEECCCC-eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCCCcEEE
Confidence            345566  999998 55555554 99999999887 54445567789999999999988887777899999998887544


Q ss_pred             eecc----ccCCeEEEEEccCCcEEEE----ee-------------CCCcEEEEeCCcccchhcccccccceEEeecCCc
Q 014475          117 KWHA----HYRAVTCLVFSEDGSFLIS----GS-------------EDGCVRIWSLLTVFEECESQRASHLYLHSFTGHT  175 (424)
Q Consensus       117 ~~~~----~~~~i~~~~~~~~~~~l~s----~~-------------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  175 (424)
                      ....    ....+..++++|+|+++++    ++             ..+.|..++...             ....+..+.
T Consensus       105 ~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~g-------------~~~~~~~~~  171 (296)
T 3e5z_A          105 IADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPDG-------------TLSAPIRDR  171 (296)
T ss_dssp             EECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTTS-------------CEEEEECCC
T ss_pred             EeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCCC-------------CEEEeecCC
Confidence            3322    1235678999999998887    33             123555555421             122334455


Q ss_pred             CceeEEEEEEcCceeEEEEEeCCCcEEEEecC-CCce---eeeee-cCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCC
Q 014475          176 LRITDIVIGYGGVSATIVSASEDRTCKVWSLL-KGRL---LRNIV-FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAE  250 (424)
Q Consensus       176 ~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~-~~~~---~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  250 (424)
                      .....++|+|++  +.+++.+.++.|.+||+. +++.   ...+. ....+..++++++|+++++.  ++.|.+||.+. 
T Consensus       172 ~~~~gi~~s~dg--~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~g-  246 (296)
T 3e5z_A          172 VKPNGLAFLPSG--NLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA--GDGVHVLTPDG-  246 (296)
T ss_dssp             SSEEEEEECTTS--CEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE--TTEEEEECTTS-
T ss_pred             CCCccEEECCCC--CEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc--CCeEEEECCCC-
Confidence            667889999998  667777788999999997 4544   22221 34456789999999866655  78899999864 


Q ss_pred             CCCCCCcCceeeeeecccCcCeEEEEe-cC-CCEEEEeCCCCcEEEEeCCCCcE
Q 014475          251 SPSTSSYGMHIIGSLSDHSKAVTCLAY-ST-GDLLISGSEDGMVRVWDPITHNI  302 (424)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~-~~~l~t~~~dg~i~iwd~~~~~~  302 (424)
                               +.+..+..+.. +++++| .| ++.|++++.++ +.-++.++.+.
T Consensus       247 ---------~~~~~~~~~~~-~~~~~f~~~d~~~L~v~t~~~-l~~~~~~~~~~  289 (296)
T 3e5z_A          247 ---------DELGRVLTPQT-TSNLCFGGPEGRTLYMTVSTE-FWSIETNVRGL  289 (296)
T ss_dssp             ---------CEEEEEECSSC-CCEEEEESTTSCEEEEEETTE-EEEEECSCCBC
T ss_pred             ---------CEEEEEECCCC-ceeEEEECCCCCEEEEEcCCe-EEEEEcccccc
Confidence                     34555666666 899999 46 77787777664 55556665543

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.72  E-value=4.1e-15  Score=128.20  Aligned_cols=238  Identities=8%  Similarity=-0.012  Sum_probs=165.6

Q ss_pred             ceEEecceeecCCCccc-cCCCCceeEEEEECCCCceeee-ecCCCCeeEEEECCCCCEEEEecCCCcEEEEEccCccee
Q 014475           38 GLACVGQRFLASSQLRE-QPSASSGSILYWSWSKPQVEVK-SLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLL  115 (424)
Q Consensus        38 ~v~~~~~~~~~~~~~l~-~~~~~~g~i~vwd~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~  115 (424)
                      ....++  +.++|++.+ +...+ +.|.+|+..+...... ......+.+++++++++++++.. ++.|.+||.......
T Consensus        25 ~p~~i~--~~~~g~l~v~~~~~~-~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~  100 (270)
T 1rwi_B           25 SPSGVA--VDSAGNVYVTSEGMY-GRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQT  100 (270)
T ss_dssp             CEEEEE--ECTTCCEEEEECSSS-CEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCCE
T ss_pred             CccceE--ECCCCCEEEEccCCC-CcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceEe
Confidence            556667  899998666 43454 8999999766544322 22335788999999999776665 889999998665433


Q ss_pred             eeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEE
Q 014475          116 KKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSA  195 (424)
Q Consensus       116 ~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~  195 (424)
                      .........+..+++.++++.+++...++.|.+|+..+.           ............+.++++++++  +.+++.
T Consensus       101 ~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~-----------~~~~~~~~~~~~p~~i~~~~~g--~l~v~~  167 (270)
T 1rwi_B          101 VLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSK-----------TQTVLPFTGLNDPDGVAVDNSG--NVYVTD  167 (270)
T ss_dssp             ECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCC-----------SCEECCCCSCCSCCCEEECTTC--CEEEEE
T ss_pred             eeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCc-----------eeEeeccccCCCceeEEEeCCC--CEEEEE
Confidence            222223367899999999998887777889999976431           1111112233457788998877  666776


Q ss_pred             eCCCcEEEEecCCCceeeeee-cCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEE
Q 014475          196 SEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTC  274 (424)
Q Consensus       196 ~~d~~v~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~  274 (424)
                      ..++.|.+||........... ....+..++++++|.++++...++.|.+|+......         ......+...+.+
T Consensus       168 ~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~---------~~~~~~~~~~p~~  238 (270)
T 1rwi_B          168 TDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTS---------TVLPFTGLNTPLA  238 (270)
T ss_dssp             GGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCC---------EECCCCSCSCEEE
T ss_pred             CCCCEEEEEecCCCceEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcc---------eeeccCCCCCcee
Confidence            678899999987765443322 226688999999997777777788999999876421         1111223356899


Q ss_pred             EEecC-CCEEEEeCCCCcEEEEeCCCCc
Q 014475          275 LAYST-GDLLISGSEDGMVRVWDPITHN  301 (424)
Q Consensus       275 ~~~~~-~~~l~t~~~dg~i~iwd~~~~~  301 (424)
                      +++++ ++++++...++.|+++++...+
T Consensus       239 i~~~~~g~l~v~~~~~~~v~~~~~~~~~  266 (270)
T 1rwi_B          239 VAVDSDRTVYVADRGNDRVVKLTSLEHH  266 (270)
T ss_dssp             EEECTTCCEEEEEGGGTEEEEECCCGGG
T ss_pred             EEECCCCCEEEEECCCCEEEEEcCCCcc
Confidence            99999 8888888899999999987654

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.71  E-value=1.1e-14  Score=129.61  Aligned_cols=247  Identities=14%  Similarity=0.110  Sum_probs=167.7

Q ss_pred             CCCceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCceeeee-cCCCCeeEEEEC
Q 014475           11 ADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKS-LPAEPIKPIAAN   89 (424)
Q Consensus        11 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~~-~~~~~v~~~~~s   89 (424)
                      .++.++.|   .++....+..+.   ..+..++  |++++++++++..+ +.|.+||.++++..... .+...+.+++++
T Consensus        25 ~~~~~~~~---~~~~~~~~~~~~---~~~~~~~--~~~~g~l~~~~~~~-~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~   95 (333)
T 2dg1_A           25 SESELQTI---TAEPWLEISKKG---LQLEGLN--FDRQGQLFLLDVFE-GNIFKINPETKEIKRPFVSHKANPAAIKIH   95 (333)
T ss_dssp             CGGGSCEE---ECEEEEEEESSC---CCEEEEE--ECTTSCEEEEETTT-CEEEEECTTTCCEEEEEECSSSSEEEEEEC
T ss_pred             ecccCccc---ccceeEEEeccC---ccccCcE--ECCCCCEEEEECCC-CEEEEEeCCCCcEEEEeeCCCCCcceEEEC
Confidence            67888999   355666665443   3456666  99999977666665 89999999887765433 456789999999


Q ss_pred             CCCCEEEEecCC----CcEEEEEccCcceeeeec--cccCCeEEEEEccCCcEEEEeeC------CCcEEEEeCCcccch
Q 014475           90 SHGTYIAGGGQS----GDIYMWEVASGRLLKKWH--AHYRAVTCLVFSEDGSFLISGSE------DGCVRIWSLLTVFEE  157 (424)
Q Consensus        90 ~~~~~l~~~~~d----g~v~iwd~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~s~~~------dg~i~iwd~~~~~~~  157 (424)
                      |+|+++++...+    +.|.+||.+++.....+.  .+...+.++.++|+++++++...      .+.|..+|..++.  
T Consensus        96 ~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~--  173 (333)
T 2dg1_A           96 KDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRT--  173 (333)
T ss_dssp             TTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCC--
T ss_pred             CCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCE--
Confidence            999988877666    689999988776543332  24467899999999988776653      3556666653311  


Q ss_pred             hcccccccceEEeecCCcCceeEEEEEEcCceeEE-EEEeCCCcEEEEecCC-Cceeeee------ecC--cceeEEEEC
Q 014475          158 CESQRASHLYLHSFTGHTLRITDIVIGYGGVSATI-VSASEDRTCKVWSLLK-GRLLRNI------VFP--SVIDAIALD  227 (424)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l-~~~~~d~~v~iwd~~~-~~~~~~~------~~~--~~i~~~~~~  227 (424)
                                ...+..+...+..++|++++  +.+ ++.+.++.|.+||+.+ +.....+      ...  ..+..++++
T Consensus       174 ----------~~~~~~~~~~~~~i~~~~dg--~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d  241 (333)
T 2dg1_A          174 ----------VTPIIQNISVANGIALSTDE--KVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCID  241 (333)
T ss_dssp             ----------EEEEEEEESSEEEEEECTTS--SEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEB
T ss_pred             ----------EEEeecCCCcccceEECCCC--CEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCCCCCCceEEC
Confidence                      11111223356788999987  544 4555678999999964 3322211      111  367889999


Q ss_pred             CCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccC------cCeEEEEecC-CCEEEEeCCCC
Q 014475          228 PAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHS------KAVTCLAYST-GDLLISGSEDG  290 (424)
Q Consensus       228 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~------~~i~~~~~~~-~~~l~t~~~dg  290 (424)
                      ++++++++...++.|.+||.+.          +.+..+..+.      ..+.+++|+| ++.|+.++.++
T Consensus       242 ~~G~l~v~~~~~~~v~~~d~~g----------~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~g  301 (333)
T 2dg1_A          242 SDDNLYVAMYGQGRVLVFNKRG----------YPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSNDI  301 (333)
T ss_dssp             TTCCEEEEEETTTEEEEECTTS----------CEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEECG
T ss_pred             CCCCEEEEEcCCCEEEEECCCC----------CEEEEEEcCCCccccccCcceEEECCCCCEEEEEeCcc
Confidence            9999888777888999999843          2233333222      2688999998 66666555443

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.71  E-value=8.8e-16  Score=151.60  Aligned_cols=279  Identities=13%  Similarity=0.010  Sum_probs=181.9

Q ss_pred             eecCCCccccCCCCce--eEEEEEC--C---CCceeee-------ecCCCCeeEEEECCCCCEEEEecCC-----CcEEE
Q 014475           46 FLASSQLREQPSASSG--SILYWSW--S---KPQVEVK-------SLPAEPIKPIAANSHGTYIAGGGQS-----GDIYM  106 (424)
Q Consensus        46 ~~~~~~~l~~~~~~~g--~i~vwd~--~---~~~~~~~-------~~~~~~v~~~~~s~~~~~l~~~~~d-----g~v~i  106 (424)
                      ..|+|++++....+.+  .-.+|..  .   .++....       ..+...+..++|||||++||.+..+     ..|++
T Consensus       114 p~pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v  193 (741)
T 1yr2_A          114 PQRRGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSDWRTVKF  193 (741)
T ss_dssp             CEEETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTCSEEEEEE
T ss_pred             CEEECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEE
Confidence            4588888876654433  3445543  3   3332221       1122368899999999999887543     35999


Q ss_pred             EEccCcceeeeeccccCCeEEEEEccCCcEEEEeeCCCc--------------EEEEeCCcccchhcccccccceEEeec
Q 014475          107 WEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGC--------------VRIWSLLTVFEECESQRASHLYLHSFT  172 (424)
Q Consensus       107 wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~--------------i~iwd~~~~~~~~~~~~~~~~~~~~~~  172 (424)
                      ||+.+++.+... .+...+..++|+|| +.|+.++.++.              |++|++.++..       ....+....
T Consensus       194 ~dl~tg~~~~~~-~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~-------~~~lv~~~~  264 (741)
T 1yr2_A          194 VGVADGKPLADE-LKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQS-------ADQPVFATP  264 (741)
T ss_dssp             EETTTCCEEEEE-EEEEESCCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGG-------GCEEEECCT
T ss_pred             EECCCCCCCCcc-CCCceeccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCch-------hCEEEeccC
Confidence            999999875432 12222357899999 98888876654              88999865321       112233333


Q ss_pred             CCcCceeEEEEEEcCceeEEEEEeCCC-----cEEEEecCCC--ceeeeee-cCcceeEEEECCCCCEEEEEeCC----C
Q 014475          173 GHTLRITDIVIGYGGVSATIVSASEDR-----TCKVWSLLKG--RLLRNIV-FPSVIDAIALDPAEHVFYAGSRD----G  240 (424)
Q Consensus       173 ~~~~~i~~~~~~~~~~~~~l~~~~~d~-----~v~iwd~~~~--~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~d----g  240 (424)
                      .+...+..+.|+|++  ++|+..+.++     .|.+||+.++  +....+. ......... +|+++.|+..+.+    +
T Consensus       265 ~~~~~~~~~~~SpDG--~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~-~~dg~~l~~~s~~~~~~~  341 (741)
T 1yr2_A          265 ELPKRGHGASVSSDG--RWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDFV-DGVGDQLWFVSGDGAPLK  341 (741)
T ss_dssp             TCTTCEEEEEECTTS--CEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEEE-EEETTEEEEEECTTCTTC
T ss_pred             CCCeEEEEEEECCCC--CEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEEEE-eccCCEEEEEECCCCCCC
Confidence            344457889999998  7777666443     7999999877  4133343 333444443 4889888887764    4


Q ss_pred             cEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecCCCEEEEeCCCCcEEEEeCC-CCcEEEEEecc-CCCeeEEEE
Q 014475          241 SIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTGDLLISGSEDGMVRVWDPI-THNIVRMFRLA-KGPVNNILV  318 (424)
Q Consensus       241 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~t~~~dg~i~iwd~~-~~~~~~~~~~~-~~~v~~l~~  318 (424)
                      .|.+||+.... .      .....+..+...+..+.+..+.++++...|+..+||.+. +++....+..+ .+.+..+.+
T Consensus       342 ~l~~~d~~~~~-~------~~~~l~~~~~~~l~~~~~~~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~  414 (741)
T 1yr2_A          342 KIVRVDLSGST-P------RFDTVVPESKDNLESVGIAGNRLFASYIHDAKSQVLAFDLDGKPAGAVSLPGIGSASGLSG  414 (741)
T ss_dssp             EEEEEECSSSS-C------EEEEEECCCSSEEEEEEEEBTEEEEEEEETTEEEEEEEETTSCEEEECBCSSSCEEEEEEC
T ss_pred             EEEEEeCCCCc-c------ccEEEecCCCCeEEEEEEECCEEEEEEEECCEEEEEEEeCCCCceeeccCCCCeEEEEeec
Confidence            59999987631 0      222233444555667777767778888889987777554 46667777653 567889999


Q ss_pred             EecCceee----eccCCCceeeccCCCCC
Q 014475          319 VRRPLYLN----LGSFSNPHTSSRRHGSQ  343 (424)
Q Consensus       319 s~~~~~l~----~~~~d~~i~iw~~~~~~  343 (424)
                      +|++..|+    +....+.++.||+.+++
T Consensus       415 s~d~~~l~~~~ss~~~P~~i~~~d~~tg~  443 (741)
T 1yr2_A          415 RPGDRHAYLSFSSFTQPATVLALDPATAK  443 (741)
T ss_dssp             CBTCSCEEEEEEETTEEEEEEEEETTTTE
T ss_pred             CCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence            99998776    44556789999987654

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.70  E-value=1.4e-14  Score=124.78  Aligned_cols=210  Identities=13%  Similarity=0.106  Sum_probs=162.0

Q ss_pred             CCCEEEEecCCCcEEEEEccCcceeeeecccc-CCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEE
Q 014475           91 HGTYIAGGGQSGDIYMWEVASGRLLKKWHAHY-RAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLH  169 (424)
Q Consensus        91 ~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~  169 (424)
                      .+++|++++.++.|.+||.++|+.+.++..+. ..+.++.++|+|+.+++  .++.|..||. ++           ..+.
T Consensus         4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilvs--~~~~V~~~d~-~G-----------~~~W   69 (276)
T 3no2_A            4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILFS--YSKGAKMITR-DG-----------RELW   69 (276)
T ss_dssp             CCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEEE--CBSEEEEECT-TS-----------CEEE
T ss_pred             CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEEe--CCCCEEEECC-CC-----------CEEE
Confidence            46789999999999999999999999998766 47899999999998883  4678999998 42           2334


Q ss_pred             eecCC-cCceeEEEEEEcCceeEEEEEeC-CCcEEEEecCCCceeeeeecC-------cceeEEEECCCCCEEEEEeCCC
Q 014475          170 SFTGH-TLRITDIVIGYGGVSATIVSASE-DRTCKVWSLLKGRLLRNIVFP-------SVIDAIALDPAEHVFYAGSRDG  240 (424)
Q Consensus       170 ~~~~~-~~~i~~~~~~~~~~~~~l~~~~~-d~~v~iwd~~~~~~~~~~~~~-------~~i~~~~~~~~~~~l~~~~~dg  240 (424)
                      .+..+ ...+.++.+.+++  +.+++.+. ++.+..+|. +++.+..+...       .....++..++|+++++...++
T Consensus        70 ~~~~~~~~~~~~~~~~~dG--~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~  146 (276)
T 3no2_A           70 NIAAPAGCEMQTARILPDG--NALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATS  146 (276)
T ss_dssp             EEECCTTCEEEEEEECTTS--CEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTT
T ss_pred             EEcCCCCccccccEECCCC--CEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCC
Confidence            44433 3467778888887  88888877 778888885 67777766522       2345667899999999999999


Q ss_pred             cEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCCCcEEEEEeccCC------Ce
Q 014475          241 SIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKG------PV  313 (424)
Q Consensus       241 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~------~v  313 (424)
                      .|..||.. +         +.+..+..+ ..+.++...+ ++.+++++.++.|..+|..+|+.+.++..+..      .+
T Consensus       147 ~v~~~d~~-G---------~~~w~~~~~-~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~  215 (276)
T 3no2_A          147 EVREIAPN-G---------QLLNSVKLS-GTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFV  215 (276)
T ss_dssp             EEEEECTT-S---------CEEEEEECS-SCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEE
T ss_pred             EEEEECCC-C---------CEEEEEECC-CCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCcccccc
Confidence            99999988 5         334444433 3455666777 88999998888999999999999999875431      26


Q ss_pred             eEEEEEecCceeeec
Q 014475          314 NNILVVRRPLYLNLG  328 (424)
Q Consensus       314 ~~l~~s~~~~~l~~~  328 (424)
                      ..+...++|..+++.
T Consensus       216 ~~~~~~~~G~i~v~~  230 (276)
T 3no2_A          216 AQLFPLQNGGLYICN  230 (276)
T ss_dssp             EEEEECTTSCEEEEE
T ss_pred             ccceEcCCCCEEEEe
Confidence            788888999888776

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.70  E-value=1.6e-13  Score=123.32  Aligned_cols=273  Identities=9%  Similarity=-0.117  Sum_probs=182.9

Q ss_pred             eecCCCccccCCC-Cce---eEEEEECCCCceeeeecCCCCeeEEEECCCCCEEEEec----------CCCcEEEEEccC
Q 014475           46 FLASSQLREQPSA-SSG---SILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGG----------QSGDIYMWEVAS  111 (424)
Q Consensus        46 ~~~~~~~l~~~~~-~~g---~i~vwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~----------~dg~v~iwd~~~  111 (424)
                      ..|+++++.++.. ..+   .|.++|..+.+..........- .++++|||++++++.          .++.|.+||..+
T Consensus        28 ~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g~~p-~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t  106 (373)
T 2mad_H           28 PGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP-NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVT  106 (373)
T ss_pred             CCCCCCEEEEeCCcccCCccEEEEEECCCCeEEEEecCCCCC-CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCC
Confidence            4467766666543 213   8899999988765443333333 999999999999885          367899999998


Q ss_pred             cceeeeeccc-------cCCeEEEEEccCCcEEEEeeC--CCcEEEEeCCcccchhcccccccceEEe-ecCCcCceeEE
Q 014475          112 GRLLKKWHAH-------YRAVTCLVFSEDGSFLISGSE--DGCVRIWSLLTVFEECESQRASHLYLHS-FTGHTLRITDI  181 (424)
Q Consensus       112 ~~~~~~~~~~-------~~~i~~~~~~~~~~~l~s~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~  181 (424)
                      .+.+..+...       ......+.|+|||++|+++..  ++.|.++| .++.           .+.. +.. ..   ++
T Consensus       107 ~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~-----------~~~~~i~~-~~---~~  170 (373)
T 2mad_H          107 FLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGS-----------SDDQLLSS-PT---CY  170 (373)
T ss_pred             CcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCC-----------EEeEEcCC-Cc---eE
Confidence            8877766432       133568999999999998874  47899999 7732           1222 221 11   24


Q ss_pred             EEEEcCceeEEEEEeCCCcEEEEecCCCceeeeee------cCcc-eeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCC
Q 014475          182 VIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV------FPSV-IDAIALDPAEHVFYAGSRDGSIYIAALNAESPST  254 (424)
Q Consensus       182 ~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~------~~~~-i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~  254 (424)
                      .+.+.+. ..+++.+.||.+.++|. +++......      ...+ .....+.+++..++..+..+.+.+.|+.....  
T Consensus       171 ~~~~~~~-~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~--  246 (373)
T 2mad_H          171 HIHPGAP-STFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGA--  246 (373)
T ss_pred             EEEeCCC-ceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcc--
Confidence            4556654 46677788999999999 877663322      1111 12234556655555555788999999975431  


Q ss_pred             CCcCceeeeeec----------ccCcCeEEEEecC-CCEEEEeCC----------CCcEEEEeCCCCcEEEEEeccCCCe
Q 014475          255 SSYGMHIIGSLS----------DHSKAVTCLAYST-GDLLISGSE----------DGMVRVWDPITHNIVRMFRLAKGPV  313 (424)
Q Consensus       255 ~~~~~~~~~~~~----------~~~~~i~~~~~~~-~~~l~t~~~----------dg~i~iwd~~~~~~~~~~~~~~~~v  313 (424)
                           ..+..+.          ........+.++| ++.++.+..          ++.|.++|+.+++.+.++.. ....
T Consensus       247 -----~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~-g~~p  320 (373)
T 2mad_H          247 -----TNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISL-GHDV  320 (373)
T ss_pred             -----eEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEEC-CCCc
Confidence                 1111111          0122344577888 666655432          35799999999999999964 3467


Q ss_pred             eEEEEEecCc-eeeecc-CCCceeeccCCCCCCC
Q 014475          314 NNILVVRRPL-YLNLGS-FSNPHTSSRRHGSQLP  345 (424)
Q Consensus       314 ~~l~~s~~~~-~l~~~~-~d~~i~iw~~~~~~~~  345 (424)
                      ..++|+|||+ .++++. .++.|.++|..+.+..
T Consensus       321 ~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv  354 (373)
T 2mad_H          321 DAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQD  354 (373)
T ss_pred             CeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEE
Confidence            9999999999 677766 5899999999877653

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.69  E-value=3.1e-14  Score=126.36  Aligned_cols=280  Identities=10%  Similarity=0.022  Sum_probs=189.8

Q ss_pred             CCceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCC---------CceeEEEEECCCCceeeeec-C--
Q 014475           12 DTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSA---------SSGSILYWSWSKPQVEVKSL-P--   79 (424)
Q Consensus        12 dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~---------~~g~i~vwd~~~~~~~~~~~-~--   79 (424)
                      ++.|.+.|..+++.+.++.....+    . +.  ++|+|+.+.++..         +++.|.+||..+.+...... .  
T Consensus        58 ~~~V~ViD~~t~~v~~~I~vG~~P----~-va--~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g  130 (386)
T 3sjl_D           58 VTQQFVIDGEAGRVIGMIDGGFLP----N-PV--VADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDA  130 (386)
T ss_dssp             SEEEEEEETTTTEEEEEEEECSSC----E-EE--ECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTC
T ss_pred             CCEEEEEECCCCeEEEEEECCCCC----c-EE--ECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCc
Confidence            689999999999999999765443    2 55  9999999988762         23789999999988654432 1  


Q ss_pred             -----CCCeeEEEECCCCCEEEEecC--CCcEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCC
Q 014475           80 -----AEPIKPIAANSHGTYIAGGGQ--SGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLL  152 (424)
Q Consensus        80 -----~~~v~~~~~s~~~~~l~~~~~--dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~  152 (424)
                           ......++|+|||++++++..  ++.|.++|+.+++.+.++....  . ...+....+.+++.+.||.+.+.++.
T Consensus       131 ~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g--~-~~~~P~g~~~~~~~~~DG~~~~v~~~  207 (386)
T 3sjl_D          131 PRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPD--C-YHIFPTAPDTFFMHCRDGSLAKVAFG  207 (386)
T ss_dssp             CCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS--E-EEEEEEETTEEEEEETTSCEEEEECC
T ss_pred             cccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCC--c-ceeecCCCceeEEECCCCCEEEEECC
Confidence                 235678999999999888764  6889999999999988885322  1 22233345667788889999999986


Q ss_pred             cccchhcccccccceEEeecCCcCcee-EEEEE-EcCceeEEEEEeCCCcEEEEecCCCc--eeeeee-----------c
Q 014475          153 TVFEECESQRASHLYLHSFTGHTLRIT-DIVIG-YGGVSATIVSASEDRTCKVWSLLKGR--LLRNIV-----------F  217 (424)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~~-~~~~~~~l~~~~~d~~v~iwd~~~~~--~~~~~~-----------~  217 (424)
                      +...... ..  .   ..+.....++. ...|. +++  ++++ .+.+|.|.+.|+.+..  ....+.           .
T Consensus       208 ~~g~v~~-~~--~---~~~~~~~~~~~~~~~~~~~dG--~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~  278 (386)
T 3sjl_D          208 TEGTPEI-TH--T---EVFHPEDEFLINHPAYSQKAG--RLVW-PTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWR  278 (386)
T ss_dssp             SSSCCEE-EE--C---CCCSCTTSCBCSCCEEETTTT--EEEE-EBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEE
T ss_pred             CCCeEEE-ee--c---ceeccccccccccceeEcCCC--cEEE-EeCCCEEEEEECCCCcceeecceecccccccccccc
Confidence            5211100 00  0   01111112221 13444 343  4444 5668999999997654  333332           1


Q ss_pred             CcceeEEEECCCCCEEEEEeC----------CCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CC-EEEE
Q 014475          218 PSVIDAIALDPAEHVFYAGSR----------DGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GD-LLIS  285 (424)
Q Consensus       218 ~~~i~~~~~~~~~~~l~~~~~----------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~-~l~t  285 (424)
                      +.....++++|+++.+++...          .+.|.++|+.+.         +.+..+.. ...+..+++++ ++ +|++
T Consensus       279 p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~---------kv~~~i~v-g~~~~~lavs~D~~~~ly~  348 (386)
T 3sjl_D          279 PGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTG---------ERLAKFEM-GHEIDSINVSQDEKPLLYA  348 (386)
T ss_dssp             ECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTC---------CEEEEEEE-EEEECEEEECSSSSCEEEE
T ss_pred             CCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCC---------eEEEEEEC-CCCcceEEECCCCCeEEEE
Confidence            334556888999988888653          247999999887         34444432 23678999999 65 5555


Q ss_pred             -eCCCCcEEEEeCCCCcEEEEEeccCCCeeEEEEEec
Q 014475          286 -GSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRR  321 (424)
Q Consensus       286 -~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~  321 (424)
                       ...++.|.++|..+++.++++... +.-..|.+++|
T Consensus       349 tn~~~~~VsViD~~t~k~~~~i~~~-~~p~~l~~s~d  384 (386)
T 3sjl_D          349 LSTGDKTLYIHDAESGEELRSVNQL-GHGPQVITTAD  384 (386)
T ss_dssp             EETTTTEEEEEETTTCCEEEEECCC-CSSCCEEEECC
T ss_pred             EcCCCCeEEEEECCCCcEEEEecCC-CCCceeEECCc
Confidence             456899999999999999999854 33456677766

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.68  E-value=3.8e-13  Score=117.60  Aligned_cols=271  Identities=7%  Similarity=-0.012  Sum_probs=187.0

Q ss_pred             CceEEecceeecCCCccccCCCCceeEEEEECCCCceeeeec--CCCCeeEEEECCCCCEEEEecCCCcEEEEEccCcce
Q 014475           37 HGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSL--PAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRL  114 (424)
Q Consensus        37 ~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~  114 (424)
                      .....+.  +.++|+..++...+ +.|.+||.. ++......  ....+..+++.++++++++...++.|..||.. ++.
T Consensus        20 ~~p~~i~--~d~~g~l~v~~~~~-~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~   94 (300)
T 2qc5_A           20 SGPYGIT--SSEDGKVWFTQHKA-NKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGF   94 (300)
T ss_dssp             CCEEEEE--ECTTSCEEEEETTT-TEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE
T ss_pred             CCcceee--ECCCCCEEEEcCCC-CeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCe
Confidence            4566777  88999877776655 899999988 54433222  23678999999999988877777889999987 554


Q ss_pred             ee-eeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEE
Q 014475          115 LK-KWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIV  193 (424)
Q Consensus       115 ~~-~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~  193 (424)
                      .. .+......+.++++.++++++++...++.|..+|... .          ............+..+++.+++  +..+
T Consensus        95 ~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g-~----------~~~~~~~~~~~~~~~i~~d~~g--~l~v  161 (300)
T 2qc5_A           95 TEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTADG-T----------IYEYDLPNKGSYPAFITLGSDN--ALWF  161 (300)
T ss_dssp             EEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTTS-C----------EEEEECSSTTCCEEEEEECTTS--SEEE
T ss_pred             EEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCCC-C----------EEEccCCCCCCCceeEEECCCC--CEEE
Confidence            32 2222346789999999998888777678899998742 1          1111122234567888888877  6666


Q ss_pred             EEeCCCcEEEEecCCCceeeeee---cCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCc
Q 014475          194 SASEDRTCKVWSLLKGRLLRNIV---FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSK  270 (424)
Q Consensus       194 ~~~~d~~v~iwd~~~~~~~~~~~---~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~  270 (424)
                      +...++.|..+|. +++... +.   ....+..+++++++.++++....+.|.+|+.. +.        ........+..
T Consensus       162 ~~~~~~~i~~~~~-~g~~~~-~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~-g~--------~~~~~~~~~~~  230 (300)
T 2qc5_A          162 TENQNNSIGRITN-TGKLEE-YPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITTT-GE--------ISEYDIPTPNA  230 (300)
T ss_dssp             EETTTTEEEEECT-TCCEEE-EECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECTT-CC--------EEEEECSSTTC
T ss_pred             EecCCCeEEEECC-CCcEEE-eeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcCC-Cc--------EEEEECCCCCC
Confidence            6666788999998 555443 32   23468899999999877766667789999983 21        11112233456


Q ss_pred             CeEEEEecC-CCEEEEeCCCCcEEEEeCCCCcEEEE-EeccCCCeeEEEEEecCceeeeccCCCceeeccC
Q 014475          271 AVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRM-FRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRR  339 (424)
Q Consensus       271 ~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~~~~-~~~~~~~v~~l~~s~~~~~l~~~~~d~~i~iw~~  339 (424)
                      .+.++++++ ++++++...++.|..||. +++.... +......+.+++++++|...++.. . .|..++.
T Consensus       231 ~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~-~-~i~~~~p  298 (300)
T 2qc5_A          231 RPHAITAGKNSEIWFTEWGANQIGRITN-DNTIQEYQLQTENAEPHGITFGKDGSVWFALK-C-KIGKLNL  298 (300)
T ss_dssp             CEEEEEECSTTCEEEEETTTTEEEEECT-TSCEEEEECCSTTCCCCCEEECTTSCEEEECS-S-EEEEEEE
T ss_pred             CceEEEECCCCCEEEeccCCCeEEEECC-CCcEEEEECCccCCccceeEeCCCCCEEEEcc-C-ceEEeCC
Confidence            788999998 787777777889999998 4544322 222345788999999998766655 4 5555543

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.67  E-value=1.1e-13  Score=121.94  Aligned_cols=246  Identities=9%  Similarity=0.057  Sum_probs=168.1

Q ss_pred             CCCeeEEEECCCCCEEEE-------ecCCCcEEEEEccCcceeeeec----cccCCeEEEEEccC-CcEEEEeeCCCcEE
Q 014475           80 AEPIKPIAANSHGTYIAG-------GGQSGDIYMWEVASGRLLKKWH----AHYRAVTCLVFSED-GSFLISGSEDGCVR  147 (424)
Q Consensus        80 ~~~v~~~~~s~~~~~l~~-------~~~dg~v~iwd~~~~~~~~~~~----~~~~~i~~~~~~~~-~~~l~s~~~dg~i~  147 (424)
                      -....+++|++++.++++       +..++.|.+||..+++......    ++...+.++.++++ ++++++.. .+.|.
T Consensus        17 ~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~-~~~l~   95 (314)
T 1pjx_A           17 IPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADM-RLGLL   95 (314)
T ss_dssp             CTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEET-TTEEE
T ss_pred             CCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEEC-CCCEE
Confidence            345689999999988888       6778899999988776543222    25567999999998 76555544 44788


Q ss_pred             EEeCCcccchhcccccccceEEeec-CCcCceeEEEEEEcCceeEEEEEeCC---------------CcEEEEecCCCce
Q 014475          148 IWSLLTVFEECESQRASHLYLHSFT-GHTLRITDIVIGYGGVSATIVSASED---------------RTCKVWSLLKGRL  211 (424)
Q Consensus       148 iwd~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~l~~~~~d---------------~~v~iwd~~~~~~  211 (424)
                      +||.. +.....       ...... .....+.++++.+++  ++.++...+               +.|..||.. ++.
T Consensus        96 ~~d~~-g~~~~~-------~~~~~~~~~~~~~~~i~~d~~g--~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~  164 (314)
T 1pjx_A           96 VVQTD-GTFEEI-------AKKDSEGRRMQGCNDCAFDYEG--NLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQM  164 (314)
T ss_dssp             EEETT-SCEEEC-------CSBCTTSCBCBCCCEEEECTTS--CEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCE
T ss_pred             EEeCC-CCEEEE-------EeccCCCccccCCcCEEECCCC--CEEEEecCcccccccccccccCCCCeEEEECCC-CCE
Confidence            99985 211000       000001 122457889998887  666665544               567777765 554


Q ss_pred             eeeeecCcceeEEEEC----CCCCEEEEE-eCCCcEEEEEcC-CCCCCCCCcCceeeeeecccC-cCeEEEEecC-CCEE
Q 014475          212 LRNIVFPSVIDAIALD----PAEHVFYAG-SRDGSIYIAALN-AESPSTSSYGMHIIGSLSDHS-KAVTCLAYST-GDLL  283 (424)
Q Consensus       212 ~~~~~~~~~i~~~~~~----~~~~~l~~~-~~dg~i~i~d~~-~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~-~~~l  283 (424)
                      ............++++    |+++.++++ ..++.|.+||.. .+...    .......+..+. ..+..+++++ ++++
T Consensus       165 ~~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~----~~~~~~~~~~~~~~~p~~i~~d~~G~l~  240 (314)
T 1pjx_A          165 IQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIE----NKKVWGHIPGTHEGGADGMDFDEDNNLL  240 (314)
T ss_dssp             EEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEE----EEEEEEECCCCSSCEEEEEEEBTTCCEE
T ss_pred             EEeccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccc----cceEEEECCCCCCCCCCceEECCCCCEE
Confidence            4433444556889999    999766655 467899999986 22100    001222333343 5678899999 8888


Q ss_pred             EEeCCCCcEEEEeCCCCcEEEEEeccCCCeeEEEEEecCcee-eeccCCCceeeccCCC
Q 014475          284 ISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYL-NLGSFSNPHTSSRRHG  341 (424)
Q Consensus       284 ~t~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l-~~~~~d~~i~iw~~~~  341 (424)
                      ++...++.|.+||..+++.+..+..+...+.+++|+|+++.| ++...++.|..|++..
T Consensus       241 v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~  299 (314)
T 1pjx_A          241 VANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR  299 (314)
T ss_dssp             EEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred             EEEcCCCEEEEEcCCCCcEeEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence            887778899999998888888887777889999999999855 5555678898888764

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.67  E-value=1.1e-12  Score=117.87  Aligned_cols=262  Identities=9%  Similarity=-0.090  Sum_probs=175.5

Q ss_pred             ceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCC---------CceeEEEEECCCCceeeeecC-----
Q 014475           14 GIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSA---------SSGSILYWSWSKPQVEVKSLP-----   79 (424)
Q Consensus        14 ~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~---------~~g~i~vwd~~~~~~~~~~~~-----   79 (424)
                      +|.++|..+++.+.++.....+     .+.  ++|||+.+.++..         .++.|.+||..+.+.......     
T Consensus        48 ~v~v~D~~t~~~~~~i~~g~~p-----~i~--~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~  120 (373)
T 2mad_H           48 QQWVLDAGSGSILGHVNGGFLP-----NPV--AAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPR  120 (373)
T ss_pred             EEEEEECCCCeEEEEecCCCCC-----CeE--ECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccc
Confidence            8999999999998888654321     344  9999999998852         237899999987665433211     


Q ss_pred             ---CCCeeEEEECCCCCEEEEecC--CCcEEEEEccCcceeee-eccccCCeEEEEEccCC-cEEEEeeCCCcEEEEeCC
Q 014475           80 ---AEPIKPIAANSHGTYIAGGGQ--SGDIYMWEVASGRLLKK-WHAHYRAVTCLVFSEDG-SFLISGSEDGCVRIWSLL  152 (424)
Q Consensus        80 ---~~~v~~~~~s~~~~~l~~~~~--dg~v~iwd~~~~~~~~~-~~~~~~~i~~~~~~~~~-~~l~s~~~dg~i~iwd~~  152 (424)
                         ......++|+|||++|+++..  ++.|.++| .+++.+.. +... .   ++.+.|++ +.+++.+.||.+.++|. 
T Consensus       121 ~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~-~---~~~~~~~~~~~~~~~~~dg~~~~vd~-  194 (373)
T 2mad_H          121 FDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSP-T---CYHIHPGAPSTFYLLCAQGGLAKTDH-  194 (373)
T ss_pred             cccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCC-c---eEEEEeCCCceEEEEcCCCCEEEEEC-
Confidence               134568999999999998864  47899999 99988877 6432 2   24455544 45667778999999999 


Q ss_pred             cccchhcccccccceEEeecCCcCce-eEEEEEEcCceeEEEEEeCCCcEEEEecCCCc--eeeeee-----------cC
Q 014475          153 TVFEECESQRASHLYLHSFTGHTLRI-TDIVIGYGGVSATIVSASEDRTCKVWSLLKGR--LLRNIV-----------FP  218 (424)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~i-~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~--~~~~~~-----------~~  218 (424)
                      ++........   .  ..+ ....++ ....+.+++  ..++..+.++.+.+.|+....  .+..+.           .+
T Consensus       195 ~g~~~~~~~~---~--~~~-~~~~p~~~~~~~~~~~--~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p  266 (373)
T 2mad_H          195 AGGAAGAGLV---G--AML-TAAQNLLTQPAQANKS--GRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRP  266 (373)
T ss_pred             CCcEEEEEec---c--ccc-cCCcceeecceeEecC--CEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceec
Confidence            6432100000   0  001 111121 223455555  333333467889999986543  222222           12


Q ss_pred             cceeEEEECCCCCEEEEEeC----------CCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CC-EEEEe
Q 014475          219 SVIDAIALDPAEHVFYAGSR----------DGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GD-LLISG  286 (424)
Q Consensus       219 ~~i~~~~~~~~~~~l~~~~~----------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~-~l~t~  286 (424)
                      .....+.++|+++.+++...          .+.|.++|..+.         +.+..+. -......++|+| ++ .++++
T Consensus       267 ~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~---------~vv~~i~-~g~~p~~i~~s~Dg~~~l~v~  336 (373)
T 2mad_H          267 GGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVG---------QTSSQIS-LGHDVDAISVAQDGGPDLYAL  336 (373)
T ss_pred             CceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCC---------EEEEEEE-CCCCcCeEEECCCCCeEEEEE
Confidence            33455789999998888654          357999999886         4455553 233578999999 77 77777


Q ss_pred             C-CCCcEEEEeCCCCcEEEEE
Q 014475          287 S-EDGMVRVWDPITHNIVRMF  306 (424)
Q Consensus       287 ~-~dg~i~iwd~~~~~~~~~~  306 (424)
                      . .++.|.++|+.+++.+.++
T Consensus       337 ~~~~~~V~ViD~~t~~vv~~i  357 (373)
T 2mad_H          337 SAGTEVLHIYDAGAGDQDQST  357 (373)
T ss_pred             cCCCCeEEEEECCCCCEEeee
Confidence            6 5899999999999999884

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.66  E-value=1.2e-12  Score=114.21  Aligned_cols=257  Identities=10%  Similarity=0.049  Sum_probs=174.2

Q ss_pred             CCCceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCceeeee--cCCCCeeEEEE
Q 014475           11 ADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKS--LPAEPIKPIAA   88 (424)
Q Consensus        11 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~~--~~~~~v~~~~~   88 (424)
                      .++.|.+||.. ++.. .+... .....+..++  +.++|...++...+ +.|..|+.+. +.....  .....+..+++
T Consensus        34 ~~~~v~~~d~~-~~~~-~~~~~-~~~~~~~~i~--~~~~g~l~v~~~~~-~~i~~~~~~g-~~~~~~~~~~~~~~~~i~~  106 (299)
T 2z2n_A           34 KANMISCINLD-GKIT-EYPLP-TPDAKVMCLT--ISSDGEVWFTENAA-NKIGRITKKG-IIKEYTLPNPDSAPYGITE  106 (299)
T ss_dssp             TTTEEEEECTT-CCEE-EEECS-STTCCEEEEE--ECTTSCEEEEETTT-TEEEEECTTS-CEEEEECSSTTCCEEEEEE
T ss_pred             CCCcEEEEcCC-CCeE-EecCC-cccCceeeEE--ECCCCCEEEeCCCC-CeEEEECCCC-cEEEEeCCCcCCCceeeEE
Confidence            47889999988 5543 33221 1235577777  88999887776655 8899999863 332222  23557899999


Q ss_pred             CCCCCEEEEecCCCcEEEEEccCcceeee-eccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccce
Q 014475           89 NSHGTYIAGGGQSGDIYMWEVASGRLLKK-WHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLY  167 (424)
Q Consensus        89 s~~~~~l~~~~~dg~v~iwd~~~~~~~~~-~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~  167 (424)
                      .|+++++++...++.|..||. +++.... ...+...+..+++.++++.+++...++.|..||. ++.         .. 
T Consensus       107 ~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~---------~~-  174 (299)
T 2z2n_A          107 GPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTENQNNAIGRITE-SGD---------IT-  174 (299)
T ss_dssp             CTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCC---------EE-
T ss_pred             CCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCc---------EE-
Confidence            999998888777889999998 5544322 2334567899999999988877777789999998 321         11 


Q ss_pred             EEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeee---cCcceeEEEECCCCCEEEEEeCCCcEEE
Q 014475          168 LHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV---FPSVIDAIALDPAEHVFYAGSRDGSIYI  244 (424)
Q Consensus       168 ~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~---~~~~i~~~~~~~~~~~l~~~~~dg~i~i  244 (424)
                      ..........+.++++.+++  ...++...++.|..||. +++... +.   ....+..++++++++++++...++.|..
T Consensus       175 ~~~~~~~~~~~~~i~~~~~g--~l~v~~~~~~~i~~~~~-~g~~~~-~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~  250 (299)
T 2z2n_A          175 EFKIPTPASGPVGITKGNDD--ALWFVEIIGNKIGRITT-SGEITE-FKIPTPNARPHAITAGAGIDLWFTEWGANKIGR  250 (299)
T ss_dssp             EEECSSTTCCEEEEEECTTS--SEEEEETTTTEEEEECT-TCCEEE-EECSSTTCCEEEEEECSTTCEEEEETTTTEEEE
T ss_pred             EeeCCCCCCcceeEEECCCC--CEEEEccCCceEEEECC-CCcEEE-EECCCCCCCceeEEECCCCCEEEeccCCceEEE
Confidence            11122344567788888876  66666666789999998 665433 32   2367889999999986666657789999


Q ss_pred             EEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCCCc
Q 014475          245 AALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHN  301 (424)
Q Consensus       245 ~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~  301 (424)
                      ||... .        ........+...+.++++ + +.++++.. .+.|..++.++++
T Consensus       251 ~d~~g-~--------~~~~~~~~~~~~~~~i~~-~~g~l~v~~~-~~~l~~~~~~~~~  297 (299)
T 2z2n_A          251 LTSNN-I--------IEEYPIQIKSAEPHGICF-DGETIWFAME-CDKIGKLTLIKDN  297 (299)
T ss_dssp             EETTT-E--------EEEEECSSSSCCEEEEEE-CSSCEEEEET-TTEEEEEEEC---
T ss_pred             ECCCC-c--------eEEEeCCCCCCccceEEe-cCCCEEEEec-CCcEEEEEcCccc
Confidence            99832 1        111122344567899999 8 77666655 5667777776543

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.64  E-value=8.4e-14  Score=123.57  Aligned_cols=274  Identities=11%  Similarity=-0.006  Sum_probs=184.4

Q ss_pred             eecCCCccccCCCC----ceeEEEEECCCCceeeeecCCCCeeEEEECCCCCEEEEec----------CCCcEEEEEccC
Q 014475           46 FLASSQLREQPSAS----SGSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGG----------QSGDIYMWEVAS  111 (424)
Q Consensus        46 ~~~~~~~l~~~~~~----~g~i~vwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~----------~dg~v~iwd~~~  111 (424)
                      ..|+++.+.++...    ++.|.+.|..+.+............ ++++|||++++++.          .++.|.+||..+
T Consensus        40 ~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t  118 (386)
T 3sjl_D           40 PAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLPN-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVT  118 (386)
T ss_dssp             CCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSCE-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTT
T ss_pred             cCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCCc-EEECCCCCEEEEEcccccccccCCCCCEEEEEECCC
Confidence            56888887777552    4899999999988765443333334 99999999888775          357899999999


Q ss_pred             cceeeeecccc-------CCeEEEEEccCCcEEEEeeC--CCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEE
Q 014475          112 GRLLKKWHAHY-------RAVTCLVFSEDGSFLISGSE--DGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIV  182 (424)
Q Consensus       112 ~~~~~~~~~~~-------~~i~~~~~~~~~~~l~s~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  182 (424)
                      ++.+..+....       .....+.|+|||++++++..  ++.|.++|+.+.           ..+.++....    +..
T Consensus       119 ~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~-----------~vv~tI~v~g----~~~  183 (386)
T 3sjl_D          119 LLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGK-----------AFKRMLDVPD----CYH  183 (386)
T ss_dssp             CCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTT-----------EEEEEEECCS----EEE
T ss_pred             CeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCC-----------cEEEEEECCC----cce
Confidence            99888775321       24667999999999888764  688999999663           2333332211    112


Q ss_pred             EEEcCceeEEEEEeCCCcEEEEecCC-Cceeeeee-c----Ccce-eEEEE-CCCCCEEEEEeCCCcEEEEEcCCCCCCC
Q 014475          183 IGYGGVSATIVSASEDRTCKVWSLLK-GRLLRNIV-F----PSVI-DAIAL-DPAEHVFYAGSRDGSIYIAALNAESPST  254 (424)
Q Consensus       183 ~~~~~~~~~l~~~~~d~~v~iwd~~~-~~~~~~~~-~----~~~i-~~~~~-~~~~~~l~~~~~dg~i~i~d~~~~~~~~  254 (424)
                      +.|.+. ..+++.+.||.+.+.++.+ ++...... .    ..++ ....| .++|++++ .+.+|.+++.|....... 
T Consensus       184 ~~P~g~-~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~-  260 (386)
T 3sjl_D          184 IFPTAP-DTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAK-  260 (386)
T ss_dssp             EEEEET-TEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSCE-
T ss_pred             eecCCC-ceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEE-EeCCCEEEEEECCCCcce-
Confidence            234332 5677888899999999876 55432111 1    1112 12355 35776555 556899999999775421 


Q ss_pred             CCcCceeeeeec----------ccCcCeEEEEecC-CCEEEEeCC----------CCcEEEEeCCCCcEEEEEeccCCCe
Q 014475          255 SSYGMHIIGSLS----------DHSKAVTCLAYST-GDLLISGSE----------DGMVRVWDPITHNIVRMFRLAKGPV  313 (424)
Q Consensus       255 ~~~~~~~~~~~~----------~~~~~i~~~~~~~-~~~l~t~~~----------dg~i~iwd~~~~~~~~~~~~~~~~v  313 (424)
                            ....+.          -.......+++++ ++.++....          .+.|.+.|+.+++.+.++... .++
T Consensus       261 ------v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg-~~~  333 (386)
T 3sjl_D          261 ------FLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMG-HEI  333 (386)
T ss_dssp             ------ECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE-EEE
T ss_pred             ------eecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECC-CCc
Confidence                  111111          0123344567788 665555431          257999999999999998753 478


Q ss_pred             eEEEEEecCc-eeee-ccCCCceeeccCCCCCCC
Q 014475          314 NNILVVRRPL-YLNL-GSFSNPHTSSRRHGSQLP  345 (424)
Q Consensus       314 ~~l~~s~~~~-~l~~-~~~d~~i~iw~~~~~~~~  345 (424)
                      .++++++|++ +|.+ ...++.|.++|..+.+..
T Consensus       334 ~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~  367 (386)
T 3sjl_D          334 DSINVSQDEKPLLYALSTGDKTLYIHDAESGEEL  367 (386)
T ss_dssp             CEEEECSSSSCEEEEEETTTTEEEEEETTTCCEE
T ss_pred             ceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEE
Confidence            8999999997 5555 456899999999877653

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.62  E-value=8.6e-14  Score=137.39  Aligned_cols=240  Identities=11%  Similarity=0.055  Sum_probs=157.2

Q ss_pred             ceEEecceeecCCCccccCCCCc----eeEEEEECCCCceeeeecCCCCeeEEEECCCCCEEEEecCCCc----------
Q 014475           38 GLACVGQRFLASSQLREQPSASS----GSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGD----------  103 (424)
Q Consensus        38 ~v~~~~~~~~~~~~~l~~~~~~~----g~i~vwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~----------  103 (424)
                      .+..+.  |+|||++++.+..++    ..|++||+.+++......+...+..++|+|| +.|+.++.++.          
T Consensus       164 ~~~~~~--~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~  240 (741)
T 1yr2_A          164 ALDAWA--ASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADELKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALN  240 (741)
T ss_dssp             EEEEEE--ECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEEEEEEESCCCEESTT-SEEEEEECCCC--------CC
T ss_pred             EEEeEE--ECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCccCCCceeccEEEECC-CEEEEEEecCcccccccccCC
Confidence            456666  999999999875432    4699999999886543323223468899999 98888876554          


Q ss_pred             ----EEEEEccCcce--eeee--ccccCCeEEEEEccCCcEEEEeeCCC-----cEEEEeCCcccchhcccccccceEEe
Q 014475          104 ----IYMWEVASGRL--LKKW--HAHYRAVTCLVFSEDGSFLISGSEDG-----CVRIWSLLTVFEECESQRASHLYLHS  170 (424)
Q Consensus       104 ----v~iwd~~~~~~--~~~~--~~~~~~i~~~~~~~~~~~l~s~~~dg-----~i~iwd~~~~~~~~~~~~~~~~~~~~  170 (424)
                          |++|++.++..  ...+  ..+...+..+.|+|||++|+..+.++     .|.+||+.++.         ......
T Consensus       241 ~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~---------~~~~~~  311 (741)
T 1yr2_A          241 YNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGK---------IGPVTA  311 (741)
T ss_dssp             CCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTE---------ECCCEE
T ss_pred             CCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCC---------CcccEE
Confidence                89999877652  2222  33334588999999999988877554     79999985521         010223


Q ss_pred             ecCCcCceeEEEEEEcCceeEEEEEeC----CCcEEEEecCCC--ceeeeee-cCcceeEEEECCCCCEEEEEeCCCcEE
Q 014475          171 FTGHTLRITDIVIGYGGVSATIVSASE----DRTCKVWSLLKG--RLLRNIV-FPSVIDAIALDPAEHVFYAGSRDGSIY  243 (424)
Q Consensus       171 ~~~~~~~i~~~~~~~~~~~~~l~~~~~----d~~v~iwd~~~~--~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~  243 (424)
                      +..+...+... +.+++  +.|+..+.    ++.|.+||+.++  +....+. +...+..++++ ++.++++...++..+
T Consensus       312 l~~~~~~~~~~-~~~dg--~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~  387 (741)
T 1yr2_A          312 LIPDLKAQWDF-VDGVG--DQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-GNRLFASYIHDAKSQ  387 (741)
T ss_dssp             EECSSSSCEEE-EEEET--TEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-BTEEEEEEEETTEEE
T ss_pred             ecCCCCceEEE-EeccC--CEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-CCEEEEEEEECCEEE
Confidence            33344444444 34776  56666554    345999999875  2333333 33456677776 666778888888877


Q ss_pred             EEEcCCCCCCCCCcCceeeeeecc-cCcCeEEEEecC-CCEEE-E---eCCCCcEEEEeCCCCc
Q 014475          244 IAALNAESPSTSSYGMHIIGSLSD-HSKAVTCLAYST-GDLLI-S---GSEDGMVRVWDPITHN  301 (424)
Q Consensus       244 i~d~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~-~~~l~-t---~~~dg~i~iwd~~~~~  301 (424)
                      +|.++...        .....+.. +...+..+.++| ++.++ +   ....++|++||+.+++
T Consensus       388 l~~~~~~g--------~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~  443 (741)
T 1yr2_A          388 VLAFDLDG--------KPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAK  443 (741)
T ss_dssp             EEEEETTS--------CEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTE
T ss_pred             EEEEeCCC--------CceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence            77665221        22333433 356788899998 66555 2   2345789999998876

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.62  E-value=1.1e-13  Score=124.96  Aligned_cols=279  Identities=11%  Similarity=-0.018  Sum_probs=185.8

Q ss_pred             cCCCccccCCCCc----eeEEEEECCCCceeeeecCCCCeeEEEECCCCCEEEEec----------CCCcEEEEEccCcc
Q 014475           48 ASSQLREQPSASS----GSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGG----------QSGDIYMWEVASGR  113 (424)
Q Consensus        48 ~~~~~l~~~~~~~----g~i~vwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~----------~dg~v~iwd~~~~~  113 (424)
                      ++++.+.++...+    +.|.+.|..+.+..........- .+.++||+++++++.          .++.|.++|..+++
T Consensus        82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~P-gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~  160 (426)
T 3c75_H           82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFLP-HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFL  160 (426)
T ss_dssp             CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSSC-EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCC
T ss_pred             CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCCC-ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCc
Confidence            4555555554433    79999999998877554433333 899999999888875          36789999999999


Q ss_pred             eeeeeccc-------cCCeEEEEEccCCcEEEEeeC--CCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEE
Q 014475          114 LLKKWHAH-------YRAVTCLVFSEDGSFLISGSE--DGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIG  184 (424)
Q Consensus       114 ~~~~~~~~-------~~~i~~~~~~~~~~~l~s~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  184 (424)
                      .+..+.-.       ......+.|+||+++++++..  ++.|.+.|+.+.           ..+..+....    +....
T Consensus       161 vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~-----------kvv~~I~v~g----~~~~~  225 (426)
T 3c75_H          161 PIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGK-----------TFDRMLDVPD----CYHIF  225 (426)
T ss_dssp             EEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTT-----------EEEEEEECCS----EEEEE
T ss_pred             EEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCC-----------eEEEEEEcCC----ceeec
Confidence            88877532       234567899999999998864  578999999662           2333333211    12344


Q ss_pred             EcCceeEEEEEeCCCcEEEEecCCCceeee----eec-Ccc-eeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcC
Q 014475          185 YGGVSATIVSASEDRTCKVWSLLKGRLLRN----IVF-PSV-IDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYG  258 (424)
Q Consensus       185 ~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~----~~~-~~~-i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  258 (424)
                      |.+. ..+++.+.||.+.+.+..+++....    +.. ..+ ...+.+.+++..++..+..+.+.+.|.......... .
T Consensus       226 p~g~-~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~-~  303 (426)
T 3c75_H          226 PASP-TVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRA-P  303 (426)
T ss_dssp             EEET-TEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECC-C
T ss_pred             cCCC-cEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEee-e
Confidence            4443 5667777889988888866655422    111 111 123567888888888888899999999764311000 0


Q ss_pred             ceeee--e--ecccCcCeEEEEecC-CCEEEEeC----------CCCcEEEEeCCCCcEEEEEeccCCCeeEEEEEecCc
Q 014475          259 MHIIG--S--LSDHSKAVTCLAYST-GDLLISGS----------EDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPL  323 (424)
Q Consensus       259 ~~~~~--~--~~~~~~~i~~~~~~~-~~~l~t~~----------~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~  323 (424)
                      +....  .  ..........++++| ++.+++..          .++.|.+.|+.+.+.+.++... .....+.|+||++
T Consensus       304 ~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg-~~P~gia~spDg~  382 (426)
T 3c75_H          304 IEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELG-HEIDSINVSQDAE  382 (426)
T ss_dssp             EESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE-EEECEEEECCSSS
T ss_pred             eeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECC-CCcCeEEEccCCC
Confidence            00000  0  000111222367888 66555542          1357999999999999999753 3578999999999


Q ss_pred             -eeeecc-CCCceeeccCCCCCCC
Q 014475          324 -YLNLGS-FSNPHTSSRRHGSQLP  345 (424)
Q Consensus       324 -~l~~~~-~d~~i~iw~~~~~~~~  345 (424)
                       +++++. .++.|.++|..+.+..
T Consensus       383 ~~lyv~n~~s~~VsVID~~t~kvv  406 (426)
T 3c75_H          383 PLLYALSAGTQTLHIYDAATGEEL  406 (426)
T ss_dssp             CEEEEEETTTTEEEEEETTTCCEE
T ss_pred             EEEEEEcCCCCeEEEEECCCCCEE
Confidence             777776 5999999999977643

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=99.61  E-value=2.8e-12  Score=116.08  Aligned_cols=308  Identities=9%  Similarity=0.033  Sum_probs=187.6

Q ss_pred             EEeecCCCCCceEEEeCCCCceEEEeeCCCCC------CCceEEecceeecCCCccccCCCCceeEEEEECCCCceeeee
Q 014475            4 LIASSSVADTGIGCWDLESGAEQLRYKSCASP------PHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKS   77 (424)
Q Consensus         4 ~lat~~~~dg~i~vwd~~~~~~~~~~~~~~~~------~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~~   77 (424)
                      .|+.++ .++.|..+|.++|+.+-+.......      ...+...   ...++..+.+++.+ +.|..+|..+++.....
T Consensus        55 ~v~~~~-~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~---~~~~~~~v~v~~~~-g~l~a~d~~tG~~~W~~  129 (376)
T 3q7m_A           55 VVYAAD-RAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGG---VTVSGGHVYIGSEK-AQVYALNTSDGTVAWQT  129 (376)
T ss_dssp             EEEEEC-TTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEE---EEEETTEEEEEETT-SEEEEEETTTCCEEEEE
T ss_pred             EEEEEc-CCCeEEEEEccCCceeeeecCccccccccccCcccccC---ceEeCCEEEEEcCC-CEEEEEECCCCCEEEEE
Confidence            355666 6899999999999988766543210      1222221   22344556666665 89999999998887665


Q ss_pred             cCCCCeeE-EEECCCCCEEEEecCCCcEEEEEccCcceeeeeccccCCe-----EEEEEccCCcEEEEeeCCCcEEEEeC
Q 014475           78 LPAEPIKP-IAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAV-----TCLVFSEDGSFLISGSEDGCVRIWSL  151 (424)
Q Consensus        78 ~~~~~v~~-~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i-----~~~~~~~~~~~l~s~~~dg~i~iwd~  151 (424)
                      .....+.+ ...  .+..+++++.++.|..+|.++|+.+..........     ......  +..++.++.++.+..+|.
T Consensus       130 ~~~~~~~~~p~~--~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~--~~~v~~g~~~g~l~~~d~  205 (376)
T 3q7m_A          130 KVAGEALSRPVV--SDGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA--FGAAVVGGDNGRVSAVLM  205 (376)
T ss_dssp             ECSSCCCSCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE--TTEEEECCTTTEEEEEET
T ss_pred             eCCCceEcCCEE--ECCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE--CCEEEEEcCCCEEEEEEC
Confidence            44333221 112  24467778889999999999998887765432211     112222  446778888999999999


Q ss_pred             CcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeeecCcceeEEEECCCCC
Q 014475          152 LTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEH  231 (424)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~  231 (424)
                      .++................+... ..+.......+   ..++.++.++.+..+|.++++.+....... ...+..  ++.
T Consensus       206 ~tG~~~w~~~~~~~~~~~~~~~~-~~~~~~p~~~~---~~v~~~~~~g~l~~~d~~tG~~~w~~~~~~-~~~~~~--~~~  278 (376)
T 3q7m_A          206 EQGQMIWQQRISQATGSTEIDRL-SDVDTTPVVVN---GVVFALAYNGNLTALDLRSGQIMWKRELGS-VNDFIV--DGN  278 (376)
T ss_dssp             TTCCEEEEEECCC------------CCCCCCEEET---TEEEEECTTSCEEEEETTTCCEEEEECCCC-EEEEEE--ETT
T ss_pred             CCCcEEEEEecccCCCCcccccc-cccCCCcEEEC---CEEEEEecCcEEEEEECCCCcEEeeccCCC-CCCceE--ECC
Confidence            77543211110000000000000 00101011112   567777889999999999999887665333 333333  467


Q ss_pred             EEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeec-ccCcCeEEEEecCCCEEEEeCCCCcEEEEeCCCCcEEEEEeccC
Q 014475          232 VFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLS-DHSKAVTCLAYSTGDLLISGSEDGMVRVWDPITHNIVRMFRLAK  310 (424)
Q Consensus       232 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~  310 (424)
                      .+++++.++.+..+|..+++.         .-... .....+...... +..|+.++.+|.|..+|..+++.+.......
T Consensus       279 ~l~~~~~~g~l~~~d~~tG~~---------~w~~~~~~~~~~~~~~~~-~~~l~v~~~~g~l~~~d~~tG~~~~~~~~~~  348 (376)
T 3q7m_A          279 RIYLVDQNDRVMALTIDGGVT---------LWTQSDLLHRLLTSPVLY-NGNLVVGDSEGYLHWINVEDGRFVAQQKVDS  348 (376)
T ss_dssp             EEEEEETTCCEEEEETTTCCE---------EEEECTTTTSCCCCCEEE-TTEEEEECTTSEEEEEETTTCCEEEEEECCT
T ss_pred             EEEEEcCCCeEEEEECCCCcE---------EEeecccCCCcccCCEEE-CCEEEEEeCCCeEEEEECCCCcEEEEEecCC
Confidence            788888999999999988742         22221 111122222222 6788889999999999999999998887644


Q ss_pred             CCeeEEEEEecCceeeeccCCCceeecc
Q 014475          311 GPVNNILVVRRPLYLNLGSFSNPHTSSR  338 (424)
Q Consensus       311 ~~v~~l~~s~~~~~l~~~~~d~~i~iw~  338 (424)
                      ..+....... +..|..++.+|.+..|+
T Consensus       349 ~~~~~~~~~~-~~~l~v~~~~G~l~~~~  375 (376)
T 3q7m_A          349 SGFQTEPVAA-DGKLLIQAKDGTVYSIT  375 (376)
T ss_dssp             TCBCSCCEEE-TTEEEEEBTTSCEEEEE
T ss_pred             CcceeCCEEE-CCEEEEEeCCCEEEEEe
Confidence            4443322223 45677788899998876

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.60  E-value=5.2e-13  Score=120.68  Aligned_cols=264  Identities=9%  Similarity=-0.039  Sum_probs=179.1

Q ss_pred             CceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCC---------CceeEEEEECCCCceeeeecC----
Q 014475           13 TGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSA---------SSGSILYWSWSKPQVEVKSLP----   79 (424)
Q Consensus        13 g~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~---------~~g~i~vwd~~~~~~~~~~~~----   79 (424)
                      +.|.+.|..+++.+.++.....+  .   +.  ++|+++.+.++..         .++.|.++|..+.+.......    
T Consensus        99 ~~VsVID~~t~~vv~~I~vG~~P--g---ia--~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~  171 (426)
T 3c75_H           99 TQQFVIDGSTGRILGMTDGGFLP--H---PV--AAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAP  171 (426)
T ss_dssp             EEEEEEETTTTEEEEEEEECSSC--E---EE--ECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCC
T ss_pred             CeEEEEECCCCEEEEEEECCCCC--c---eE--ECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCcc
Confidence            79999999999999999865433  3   44  9999999988863         248999999998876543321    


Q ss_pred             ----CCCeeEEEECCCCCEEEEecC--CCcEEEEEccCcceeeeeccccCCeEEEEEccC-CcEEEEeeCCCcEEEEeCC
Q 014475           80 ----AEPIKPIAANSHGTYIAGGGQ--SGDIYMWEVASGRLLKKWHAHYRAVTCLVFSED-GSFLISGSEDGCVRIWSLL  152 (424)
Q Consensus        80 ----~~~v~~~~~s~~~~~l~~~~~--dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~s~~~dg~i~iwd~~  152 (424)
                          ......+.|+|||++++++..  ++.|.+.|+.+++.+..+.....    ....|+ ...+++.+.||.+.+.+..
T Consensus       172 r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~----~~~~p~g~~~~v~~~~dG~~~~V~~~  247 (426)
T 3c75_H          172 RFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDC----YHIFPASPTVFYMNCRDGSLARVDFA  247 (426)
T ss_dssp             CCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE----EEEEEEETTEEEEEETTSSEEEEECC
T ss_pred             ccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCc----eeeccCCCcEEEEEcCCCCEEEEECC
Confidence                234678999999999998764  57899999999998888764221    223333 2556667778888888873


Q ss_pred             cccchhcccccccceEEeecCCcCce-eEEEEEEcCceeEEEEEeCCCcEEEEecCCCcee--eeee-----------cC
Q 014475          153 TVFEECESQRASHLYLHSFTGHTLRI-TDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLL--RNIV-----------FP  218 (424)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~i-~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~--~~~~-----------~~  218 (424)
                      ++......   .    ..+.....++ ..+.+.+++  ..++..+..+.+.+.|.......  ..+.           .+
T Consensus       248 ~~~v~~~~---~----~~~~v~~~p~~~~~~~~~dg--~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p  318 (426)
T 3c75_H          248 DGETKVTN---T----EVFHTEDELLINHPAFSLRS--GRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRP  318 (426)
T ss_dssp             TTCCEEEE---C----CCCSCTTSCBCSCCEECTTT--CEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEE
T ss_pred             CCcEEEEe---e----eeeccCCCceeeEeeecCCC--CEEEEEeCCCcEEEEeccCCceEEeeeeeecccccccccccc
Confidence            32111000   0    0111111111 123456666  55555567889999998654421  1111           12


Q ss_pred             cceeEEEECCCCCEEEEEeC----------CCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CC-EEEEe
Q 014475          219 SVIDAIALDPAEHVFYAGSR----------DGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GD-LLISG  286 (424)
Q Consensus       219 ~~i~~~~~~~~~~~l~~~~~----------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~-~l~t~  286 (424)
                      .....++++|+++.+++...          .+.|.++|..+.         +.+..+... .....+.|+| ++ ++++.
T Consensus       319 ~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~---------kvv~~I~vg-~~P~gia~spDg~~~lyv~  388 (426)
T 3c75_H          319 GGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETG---------ERINKIELG-HEIDSINVSQDAEPLLYAL  388 (426)
T ss_dssp             CSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTC---------CEEEEEEEE-EEECEEEECCSSSCEEEEE
T ss_pred             CCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCC---------eEEEEEECC-CCcCeEEEccCCCEEEEEE
Confidence            22334789999888877653          347999999986         445555422 2578899999 77 77777


Q ss_pred             C-CCCcEEEEeCCCCcEEEEE
Q 014475          287 S-EDGMVRVWDPITHNIVRMF  306 (424)
Q Consensus       287 ~-~dg~i~iwd~~~~~~~~~~  306 (424)
                      . .++.|.++|+.+++.++++
T Consensus       389 n~~s~~VsVID~~t~kvv~tI  409 (426)
T 3c75_H          389 SAGTQTLHIYDAATGEELRSV  409 (426)
T ss_dssp             ETTTTEEEEEETTTCCEEEEE
T ss_pred             cCCCCeEEEEECCCCCEEEEe
Confidence            6 5999999999999999997

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.60  E-value=1.6e-12  Score=113.59  Aligned_cols=231  Identities=10%  Similarity=0.113  Sum_probs=155.3

Q ss_pred             CCeeEEEECCC-CCEEEEecCCCcEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhc
Q 014475           81 EPIKPIAANSH-GTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECE  159 (424)
Q Consensus        81 ~~v~~~~~s~~-~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~  159 (424)
                      .-..+..|+|+ +.++++...++.|..||..+++. ..+. ....+.+++++++++++++ . ++.|.+||..++.    
T Consensus        13 ~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~-~~~~-~~~~~~~i~~~~dG~l~v~-~-~~~l~~~d~~~g~----   84 (297)
T 3g4e_A           13 RCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQV-QRVT-MDAPVSSVALRQSGGYVAT-I-GTKFCALNWKEQS----   84 (297)
T ss_dssp             SBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE-EEEE-CSSCEEEEEEBTTSSEEEE-E-TTEEEEEETTTTE----
T ss_pred             ccccCCeEECCCCEEEEEECCCCEEEEEECCCCcE-EEEe-CCCceEEEEECCCCCEEEE-E-CCeEEEEECCCCc----
Confidence            34567889985 55666767788999999987764 2332 4567999999999995554 4 5679999986532    


Q ss_pred             ccccccceEEeec--CCcCceeEEEEEEcCceeEEEEEeCC---------CcEEEEecCC-CceeeeeecCcceeEEEEC
Q 014475          160 SQRASHLYLHSFT--GHTLRITDIVIGYGGVSATIVSASED---------RTCKVWSLLK-GRLLRNIVFPSVIDAIALD  227 (424)
Q Consensus       160 ~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~~l~~~~~d---------~~v~iwd~~~-~~~~~~~~~~~~i~~~~~~  227 (424)
                           ...+....  .....++++++++++  ++.++....         ..-.+|.+.. ++...........+.++|+
T Consensus        85 -----~~~~~~~~~~~~~~~~~di~~d~dG--~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~pngi~~s  157 (297)
T 3g4e_A           85 -----AVVLATVDNDKKNNRFNDGKVDPAG--RYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFDQVDISNGLDWS  157 (297)
T ss_dssp             -----EEEEEECCTTCSSEEEEEEEECTTS--CEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEEEESBEEEEEEC
T ss_pred             -----EEEEEecCCCCCCCCCCCEEECCCC--CEEEecCCcccccccccCCCcEEEEEECCCCEEEEeeccccccceEEc
Confidence                 11111111  123457889998887  655544221         2234554432 3433333344567899999


Q ss_pred             CCCCEEEE-EeCCCcEEEEEcC--CCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCCCcEE
Q 014475          228 PAEHVFYA-GSRDGSIYIAALN--AESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIV  303 (424)
Q Consensus       228 ~~~~~l~~-~~~dg~i~i~d~~--~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~~  303 (424)
                      |+++.+++ .+.++.|..|+++  ++...    ..+....+..+...+..+++++ +++.++...++.|..||..+++.+
T Consensus       158 pdg~~lyv~~~~~~~i~~~~~d~~~G~~~----~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~  233 (297)
T 3g4e_A          158 LDHKIFYYIDSLSYSVDAFDYDLQTGQIS----NRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRL  233 (297)
T ss_dssp             TTSCEEEEEEGGGTEEEEEEECTTTCCEE----EEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEE
T ss_pred             CCCCEEEEecCCCCcEEEEeccCCCCccc----CcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEE
Confidence            99987755 4567889999985  32210    0122233334456678899999 887777777888999999999999


Q ss_pred             EEEeccCCCeeEEEEE-ecCceeeeccC
Q 014475          304 RMFRLAKGPVNNILVV-RRPLYLNLGSF  330 (424)
Q Consensus       304 ~~~~~~~~~v~~l~~s-~~~~~l~~~~~  330 (424)
                      ..+..+...+++++|. |+++.|..++.
T Consensus       234 ~~i~~p~~~~t~~~f~g~d~~~L~vt~~  261 (297)
T 3g4e_A          234 QTVKLPVDKTTSCCFGGKNYSEMYVTCA  261 (297)
T ss_dssp             EEEECSSSBEEEEEEESGGGCEEEEEEB
T ss_pred             EEEECCCCCceEEEEeCCCCCEEEEEcC
Confidence            9998887889999999 88887755443

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.60  E-value=9.7e-13  Score=119.97  Aligned_cols=235  Identities=9%  Similarity=0.020  Sum_probs=161.9

Q ss_pred             CCeeEEEECCCCCEEEEecCCCcEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEeeCCC--cEEEEeCCcccchh
Q 014475           81 EPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDG--CVRIWSLLTVFEEC  158 (424)
Q Consensus        81 ~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg--~i~iwd~~~~~~~~  158 (424)
                      .....++|+++++++++...++.|++||..++........... .. ++|+++++.|+++..++  .|.+++......  
T Consensus       131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~~-~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~--  206 (409)
T 3hrp_A          131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFKG-GK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWA--  206 (409)
T ss_dssp             CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETCCB-CB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTC--
T ss_pred             CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccCCC-Cc-eeEecCCCcEEEEecCCCceEEEEEcCCCce--
Confidence            4678999999999888877788999999987766555443322 33 99999999988888766  788888744211  


Q ss_pred             cccccccceEEeecC-CcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeee----eecCcce---eEEEECCC-
Q 014475          159 ESQRASHLYLHSFTG-HTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRN----IVFPSVI---DAIALDPA-  229 (424)
Q Consensus       159 ~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~----~~~~~~i---~~~~~~~~-  229 (424)
                            ...+..... ....+.+++++|+.  ..|+.+..++.|..||..++.....    .......   ..++++|+ 
T Consensus       207 ------~~~~g~~~~~~~~~p~~iav~p~~--g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~  278 (409)
T 3hrp_A          207 ------PTRIGQLGSTFSGKIGAVALDETE--EWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVD  278 (409)
T ss_dssp             ------EEEEEECCTTSCSCCCBCEECTTS--SEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTT
T ss_pred             ------eEEeeeccchhcCCcEEEEEeCCC--CeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCC
Confidence                  001111112 44567888998844  3455577788999999987753322    1111111   39999995 


Q ss_pred             CCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeeccc---------------CcCeEEEEecC-CCEEEEeC-CCCcE
Q 014475          230 EHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDH---------------SKAVTCLAYST-GDLLISGS-EDGMV  292 (424)
Q Consensus       230 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~---------------~~~i~~~~~~~-~~~l~t~~-~dg~i  292 (424)
                      +.++++-..++.|+.|+.+...           ..+.++               -.....+++++ ++++++-. .++.|
T Consensus       279 g~lyv~d~~~~~I~~~~~~g~~-----------~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I  347 (409)
T 3hrp_A          279 SNFYMSDQNLSSVYKITPDGEC-----------EWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCL  347 (409)
T ss_dssp             TEEEEEETTTTEEEEECTTCCE-----------EEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEE
T ss_pred             CEEEEEeCCCCEEEEEecCCCE-----------EEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEE
Confidence            5555555667889999876531           111111               24578999999 88888888 89999


Q ss_pred             EEEeCCCCcEEEEEecc---------------CCCeeEEEEEecCceeeeccCCCceeeccC
Q 014475          293 RVWDPITHNIVRMFRLA---------------KGPVNNILVVRRPLYLNLGSFSNPHTSSRR  339 (424)
Q Consensus       293 ~iwd~~~~~~~~~~~~~---------------~~~v~~l~~s~~~~~l~~~~~d~~i~iw~~  339 (424)
                      +.|++.++. +.++.++               -.....+++++++.++++-..++.|+.+++
T Consensus       348 ~~~~~~~G~-v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~  408 (409)
T 3hrp_A          348 RKLDILDGY-VSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV  408 (409)
T ss_dssp             EEEETTTTE-EEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred             EEEECCCCE-EEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence            999987776 4444444               235789999999988888888888876654

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.60  E-value=9.9e-13  Score=115.84  Aligned_cols=233  Identities=9%  Similarity=0.070  Sum_probs=157.2

Q ss_pred             ceEEecceeecCCCcccc-------CCCCceeEEEEECCCCceeeeec-----CCCCeeEEEECCC-CCEEEEecCCCcE
Q 014475           38 GLACVGQRFLASSQLREQ-------PSASSGSILYWSWSKPQVEVKSL-----PAEPIKPIAANSH-GTYIAGGGQSGDI  104 (424)
Q Consensus        38 ~v~~~~~~~~~~~~~l~~-------~~~~~g~i~vwd~~~~~~~~~~~-----~~~~v~~~~~s~~-~~~l~~~~~dg~v  104 (424)
                      ....++  |.++++++++       ...+ +.|.+||..+++......     +...+.+++++++ ++++++.. .+.|
T Consensus        19 ~~~~~~--~~~~g~l~~~~~~~~~~~~~~-~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~-~~~l   94 (314)
T 1pjx_A           19 GAEGPV--FDKNGDFYIVAPEVEVNGKPA-GEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADM-RLGL   94 (314)
T ss_dssp             TCEEEE--ECTTSCEEEEETTCEETTEEC-CEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEET-TTEE
T ss_pred             CccCce--ECCCCCEEEEEeccccCCCCC-CEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEEC-CCCE
Confidence            345566  8899987777       4555 899999987776543332     3467899999999 77565554 3479


Q ss_pred             EEEEccCcceeee-ecc----ccCCeEEEEEccCCcEEEEeeCC---------------CcEEEEeCCcccchhcccccc
Q 014475          105 YMWEVASGRLLKK-WHA----HYRAVTCLVFSEDGSFLISGSED---------------GCVRIWSLLTVFEECESQRAS  164 (424)
Q Consensus       105 ~iwd~~~~~~~~~-~~~----~~~~i~~~~~~~~~~~l~s~~~d---------------g~i~iwd~~~~~~~~~~~~~~  164 (424)
                      .+||.+ ++.... ...    ....+.+++++++++++++...+               +.|..||...           
T Consensus        95 ~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g-----------  162 (314)
T 1pjx_A           95 LVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDG-----------  162 (314)
T ss_dssp             EEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTTS-----------
T ss_pred             EEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCCC-----------
Confidence            999987 665433 221    22458899999999888776655               4677776531           


Q ss_pred             cceEEeecCCcCceeEEEEE----EcCceeEEEEE-eCCCcEEEEecC-CCce-----eeeee-cC-cceeEEEECCCCC
Q 014475          165 HLYLHSFTGHTLRITDIVIG----YGGVSATIVSA-SEDRTCKVWSLL-KGRL-----LRNIV-FP-SVIDAIALDPAEH  231 (424)
Q Consensus       165 ~~~~~~~~~~~~~i~~~~~~----~~~~~~~l~~~-~~d~~v~iwd~~-~~~~-----~~~~~-~~-~~i~~~~~~~~~~  231 (424)
                       . ...+..+......++++    +++  +.++.+ ..++.|.+||+. +++.     ...+. +. ..+..++++++|+
T Consensus       163 -~-~~~~~~~~~~~~~i~~~~~~d~dg--~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~  238 (314)
T 1pjx_A          163 -Q-MIQVDTAFQFPNGIAVRHMNDGRP--YQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNN  238 (314)
T ss_dssp             -C-EEEEEEEESSEEEEEEEECTTSCE--EEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCC
T ss_pred             -C-EEEeccCCCCcceEEEecccCCCC--CEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCC
Confidence             1 11111223345778888    776  555444 567899999986 4432     11121 11 5678899999999


Q ss_pred             EEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CC-EEEEeCCCCcEEEEeCCC
Q 014475          232 VFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GD-LLISGSEDGMVRVWDPIT  299 (424)
Q Consensus       232 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~-~l~t~~~dg~i~iwd~~~  299 (424)
                      ++++...++.|.+||.+++.         ....+..+...+.+++++| ++ ++++...++.|..|++..
T Consensus       239 l~v~~~~~~~i~~~d~~~g~---------~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~  299 (314)
T 1pjx_A          239 LLVANWGSSHIEVFGPDGGQ---------PKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR  299 (314)
T ss_dssp             EEEEEETTTEEEEECTTCBS---------CSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred             EEEEEcCCCEEEEEcCCCCc---------EeEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence            88887788999999987542         2333444557889999988 77 555666678899999764

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.57  E-value=8e-12  Score=109.10  Aligned_cols=236  Identities=12%  Similarity=0.041  Sum_probs=167.9

Q ss_pred             CCCeeEEEECCCCCEEEEecCCCcEEEEEccCcceee-eeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchh
Q 014475           80 AEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLK-KWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEEC  158 (424)
Q Consensus        80 ~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~-~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~  158 (424)
                      ...+.++++.++|++.++...++.|.+||.. ++... .+..+...+..+++.++++.+++...++.|..+|... .   
T Consensus        19 ~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~g-~---   93 (300)
T 2qc5_A           19 DSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKKG-G---   93 (300)
T ss_dssp             TCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTTS-C---
T ss_pred             CCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCCC-C---
Confidence            4578999999999988887778899999987 55433 2233346789999999998877776678899999752 1   


Q ss_pred             cccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeee-ee-cCcceeEEEECCCCCEEEEE
Q 014475          159 ESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRN-IV-FPSVIDAIALDPAEHVFYAG  236 (424)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~-~~-~~~~i~~~~~~~~~~~l~~~  236 (424)
                             ............+.++++.+++  .+.++...++.|..+|.. ++.... +. ....+..++++++++++++.
T Consensus        94 -------~~~~~~~~~~~~~~~i~~~~~g--~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~  163 (300)
T 2qc5_A           94 -------FTEYPLPQPDSGPYGITEGLNG--DIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFTE  163 (300)
T ss_dssp             -------EEEEECSSTTCCEEEEEECSTT--CEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEEE
T ss_pred             -------eEEecCCCCCCCCccceECCCC--CEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEEEe
Confidence                   1111222234567888888776  677766668899999987 554422 12 24568899999999966666


Q ss_pred             eCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCCCcEEEE-EeccCCCee
Q 014475          237 SRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRM-FRLAKGPVN  314 (424)
Q Consensus       237 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~~~~-~~~~~~~v~  314 (424)
                      ..++.|..+|. .+.        ........+...+..+++.+ +.++++....+.|.+||. +++.... +..+...+.
T Consensus       164 ~~~~~i~~~~~-~g~--------~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~  233 (300)
T 2qc5_A          164 NQNNSIGRITN-TGK--------LEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISEYDIPTPNARPH  233 (300)
T ss_dssp             TTTTEEEEECT-TCC--------EEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEE
T ss_pred             cCCCeEEEECC-CCc--------EEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEEEECCCCCCCce
Confidence            66788999988 332        11112223445788999998 877777777788999998 5554433 223445788


Q ss_pred             EEEEEecCceeeeccCCCceeeccCC
Q 014475          315 NILVVRRPLYLNLGSFSNPHTSSRRH  340 (424)
Q Consensus       315 ~l~~s~~~~~l~~~~~d~~i~iw~~~  340 (424)
                      +++++++|+..++...++.|..++..
T Consensus       234 ~i~~d~~g~l~v~~~~~~~i~~~~~~  259 (300)
T 2qc5_A          234 AITAGKNSEIWFTEWGANQIGRITND  259 (300)
T ss_dssp             EEEECSTTCEEEEETTTTEEEEECTT
T ss_pred             EEEECCCCCEEEeccCCCeEEEECCC
Confidence            99999999877777677889999874

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=99.56  E-value=6.9e-12  Score=121.96  Aligned_cols=298  Identities=13%  Similarity=0.077  Sum_probs=186.5

Q ss_pred             EEeecCCCCCceEEEeCCCCceEEEeeCCCCCCC------ceEEecceeecCCCccccCCCCceeEEEEECCCCceeeee
Q 014475            4 LIASSSVADTGIGCWDLESGAEQLRYKSCASPPH------GLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKS   77 (424)
Q Consensus         4 ~lat~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~------~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~~   77 (424)
                      .|+.++ .++.|.-+|.++|+.+-++........      ....-.  ....+..+++++.+ +.|..+|..+++.....
T Consensus        72 ~vyv~~-~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~--~~~~~g~v~v~~~d-g~l~AlDa~TG~~~W~~  147 (689)
T 1yiq_A           72 VMYTTG-PFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRG--VAVWKGKVYVGVLD-GRLEAIDAKTGQRAWSV  147 (689)
T ss_dssp             EEEEEC-GGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCC--CEEETTEEEEECTT-SEEEEEETTTCCEEEEE
T ss_pred             EEEEEc-CCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCc--cEEECCEEEEEccC-CEEEEEECCCCCEeeee
Confidence            355566 689999999999999987754322100      000011  22345566677666 99999999999887665


Q ss_pred             cCC---CCeeEEEECC---CCCEEEEec------CCCcEEEEEccCcceeeeeccc------------------------
Q 014475           78 LPA---EPIKPIAANS---HGTYIAGGG------QSGDIYMWEVASGRLLKKWHAH------------------------  121 (424)
Q Consensus        78 ~~~---~~v~~~~~s~---~~~~l~~~~------~dg~v~iwd~~~~~~~~~~~~~------------------------  121 (424)
                      ...   .....+..+|   ++. ++++.      .+|.|+.||.++|+.+..+...                        
T Consensus       148 ~~~~~~~~~~~~~~sP~v~~g~-v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~  226 (689)
T 1yiq_A          148 DTRADHKRSYTITGAPRVVNGK-VVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDA  226 (689)
T ss_dssp             ECCSCTTSCCBCCSCCEEETTE-EEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSST
T ss_pred             cCcCCCCCCccccCCcEEECCE-EEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCCce
Confidence            432   1111222233   444 44443      3689999999999987765421                        


Q ss_pred             -------cCCeEEEEEccCCcEEEEeeCCCc-------------------EEEEeCCcccchhcccccccceEEeecCCc
Q 014475          122 -------YRAVTCLVFSEDGSFLISGSEDGC-------------------VRIWSLLTVFEECESQRASHLYLHSFTGHT  175 (424)
Q Consensus       122 -------~~~i~~~~~~~~~~~l~s~~~dg~-------------------i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  175 (424)
                             ......+.+.|+...++.++.++.                   |..+|.+++...         .......|.
T Consensus       227 w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~---------W~~~~~~~d  297 (689)
T 1yiq_A          227 YVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYV---------WHYQTTPGD  297 (689)
T ss_dssp             HHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEE---------EEEESSTTC
T ss_pred             eeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCcee---------EeeecCCcc
Confidence                   011125788888888888887764                   899999875422         111111121


Q ss_pred             -------CceeEEEEEEcCc-eeEEEEEeCCCcEEEEecCCCceeeeeecCc----------------------------
Q 014475          176 -------LRITDIVIGYGGV-SATIVSASEDRTCKVWSLLKGRLLRNIVFPS----------------------------  219 (424)
Q Consensus       176 -------~~i~~~~~~~~~~-~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~----------------------------  219 (424)
                             .+........++. ...++.++.+|.++++|.++++++.......                            
T Consensus       298 ~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~  377 (689)
T 1yiq_A          298 AWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGK  377 (689)
T ss_dssp             CSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSS
T ss_pred             cccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCC
Confidence                   1111122223441 1378899999999999999999875443111                            


Q ss_pred             ------------ceeEEEECCCCCEEEEEeC---------------------------------------------CCcE
Q 014475          220 ------------VIDAIALDPAEHVFYAGSR---------------------------------------------DGSI  242 (424)
Q Consensus       220 ------------~i~~~~~~~~~~~l~~~~~---------------------------------------------dg~i  242 (424)
                                  .-..++++|+..++++...                                             +|.|
T Consensus       378 ~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l  457 (689)
T 1yiq_A          378 RNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKL  457 (689)
T ss_dssp             CEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEE
T ss_pred             eeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeE
Confidence                        0012678888888887643                                             2668


Q ss_pred             EEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCCCcEEEEEeccCCC-eeEEEEEe
Q 014475          243 YIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGP-VNNILVVR  320 (424)
Q Consensus       243 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~-v~~l~~s~  320 (424)
                      +.||+.+++         .+-....+ .+...-.+.. +.+++.|+.||.|+.||.++|+.+.+++...+. ..-+.|..
T Consensus       458 ~A~D~~tG~---------~~W~~~~~-~~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~ty~~  527 (689)
T 1yiq_A          458 IAWDPVKQQ---------AAWEVPYV-TIFNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQPAASGVMAAPVTYSV  527 (689)
T ss_dssp             EEEETTTTE---------EEEEEEES-SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEE
T ss_pred             EEEECCCCC---------eEeEccCC-CCccCccceECCCEEEEECCCCcEEEEECCCCccceeeeCCCCcccCceEEEE
Confidence            888888763         23333322 2222223444 889999999999999999999999999865432 24567788


Q ss_pred             cCcee
Q 014475          321 RPLYL  325 (424)
Q Consensus       321 ~~~~l  325 (424)
                      +|+..
T Consensus       528 ~G~qy  532 (689)
T 1yiq_A          528 DGEQY  532 (689)
T ss_dssp             TTEEE
T ss_pred             CCEEE
Confidence            88644

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.56  E-value=9e-12  Score=113.57  Aligned_cols=236  Identities=8%  Similarity=0.032  Sum_probs=160.1

Q ss_pred             CceEEecceeecCCCccccCCCCceeEEEEECCCCceeeeecCCCCeeEEEECCCCCEEEEecCCC--cEEEEEccCcce
Q 014475           37 HGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSG--DIYMWEVASGRL  114 (424)
Q Consensus        37 ~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg--~v~iwd~~~~~~  114 (424)
                      .....++  ++++++++++...+ +.|++||.+++............. ++|+|+++.|+++..++  .|.+++...+..
T Consensus       131 ~~P~~la--~d~~g~lyv~d~~~-~~I~~id~~~g~~~~~~~~~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~  206 (409)
T 3hrp_A          131 KYMWGIA--AVGNNTVLAYQRDD-PRVRLISVDDNKVTTVHPGFKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWA  206 (409)
T ss_dssp             CCEEEEE--ECSTTEEEEEETTT-TEEEEEETTTTEEEEEEETCCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTC
T ss_pred             CCceEEE--EeCCCCEEEEecCC-CcEEEEECCCCEEEEeeccCCCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCce
Confidence            3456777  99999977666655 899999998877654443333344 99999999988887766  799998876654


Q ss_pred             eeee----ccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEe--ecCCcCce--eEEEEEEc
Q 014475          115 LKKW----HAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHS--FTGHTLRI--TDIVIGYG  186 (424)
Q Consensus       115 ~~~~----~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~--~~~~~~~i--~~~~~~~~  186 (424)
                      ...+    ......+.+++++|++..|+.+..++.|+.||..+...         .....  ..++...-  ..++++|+
T Consensus       207 ~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~---------~~~~~~~~~g~~~~~P~~~ia~~p~  277 (409)
T 3hrp_A          207 PTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEV---------TLIKQLELSGSLGTNPGPYLIYYFV  277 (409)
T ss_dssp             EEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCE---------EEEEECCCCSCCCCSSCCEEEEETT
T ss_pred             eEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCE---------EEEecccccCCCCCCccccEEEeCC
Confidence            4343    22456778999999544555577788999999865321         11100  11122222  38999995


Q ss_pred             CceeEEEEEeCCCcEEEEecCCCceeeeeecC---------------cceeEEEECCCCCEEEEEe-CCCcEEEEEcCCC
Q 014475          187 GVSATIVSASEDRTCKVWSLLKGRLLRNIVFP---------------SVIDAIALDPAEHVFYAGS-RDGSIYIAALNAE  250 (424)
Q Consensus       187 ~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~---------------~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~  250 (424)
                      +. .++++-...+.|+.|+.... ........               .....++++|+++++++-. .++.|+.|++.++
T Consensus       278 ~g-~lyv~d~~~~~I~~~~~~g~-~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G  355 (409)
T 3hrp_A          278 DS-NFYMSDQNLSSVYKITPDGE-CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDG  355 (409)
T ss_dssp             TT-EEEEEETTTTEEEEECTTCC-EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTT
T ss_pred             CC-EEEEEeCCCCEEEEEecCCC-EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCC
Confidence            32 67777777889999997643 22222121               3478999999999777777 7889999997654


Q ss_pred             CCCCCCcCceeeeeeccc---------------CcCeEEEEecC-CCEEEEeCCCCcEEEEeC
Q 014475          251 SPSTSSYGMHIIGSLSDH---------------SKAVTCLAYST-GDLLISGSEDGMVRVWDP  297 (424)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~---------------~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~  297 (424)
                      .          +..+.++               -.....+++++ +.++++-..++.|+.+++
T Consensus       356 ~----------v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~  408 (409)
T 3hrp_A          356 Y----------VSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV  408 (409)
T ss_dssp             E----------EEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred             E----------EEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence            2          2222222               24578899999 878888888888887765

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.55  E-value=3.4e-12  Score=111.98  Aligned_cols=235  Identities=12%  Similarity=0.037  Sum_probs=157.4

Q ss_pred             ecCCCCeeEEEECCCCC-EEEEecCCCcEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCccc
Q 014475           77 SLPAEPIKPIAANSHGT-YIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVF  155 (424)
Q Consensus        77 ~~~~~~v~~~~~s~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~  155 (424)
                      ...........|+|+++ +++++..++.|..|+. +++ ...+..+...+..++++++|+++++...++.|.+|+... .
T Consensus        41 ~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~-~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~g-~  117 (305)
T 3dr2_A           41 YDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGT-VDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDADG-Q  117 (305)
T ss_dssp             ECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSC-EEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTTS-C
T ss_pred             ecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCC-EEEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCCC-C
Confidence            33445677899999998 6677777889999997 454 345555667899999999999766655667899998742 1


Q ss_pred             chhcccccccceEEeecC-CcCceeEEEEEEcCceeEEEE----EeC-------------CCcEEEEecCCCceeeeeec
Q 014475          156 EECESQRASHLYLHSFTG-HTLRITDIVIGYGGVSATIVS----ASE-------------DRTCKVWSLLKGRLLRNIVF  217 (424)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~l~~----~~~-------------d~~v~iwd~~~~~~~~~~~~  217 (424)
                      .        ........+ ....+.++++.+++  .+.++    |..             .+.|..+|..+++..... .
T Consensus       118 ~--------~~~~~~~~~~~~~~~~~i~~d~dG--~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~-~  186 (305)
T 3dr2_A          118 A--------HLLVGRYAGKRLNSPNDLIVARDG--AIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA-D  186 (305)
T ss_dssp             E--------EEEECEETTEECSCCCCEEECTTS--CEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE-E
T ss_pred             E--------EEEEeccCCCccCCCCCEEECCCC--CEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe-c
Confidence            0        001111111 12346788998887  66665    332             256888887767654443 4


Q ss_pred             CcceeEEEECCCCCEEEEEeCC------CcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCCC
Q 014475          218 PSVIDAIALDPAEHVFYAGSRD------GSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDG  290 (424)
Q Consensus       218 ~~~i~~~~~~~~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg  290 (424)
                      ....+.++|+|+++.|+++...      +.|+.|++..... .   ......  ......+..+++++ ++ |.++..+|
T Consensus       187 ~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l-~---~~~~~~--~~~~~~pdgi~~d~~G~-lwv~~~~g  259 (305)
T 3dr2_A          187 LDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGAL-H---DRRHFA--SVPDGLPDGFCVDRGGW-LWSSSGTG  259 (305)
T ss_dssp             ESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEE-E---EEEEEE--CCSSSCCCSEEECTTSC-EEECCSSE
T ss_pred             CCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCc-c---CCeEEE--ECCCCCCCeEEECCCCC-EEEecCCc
Confidence            4456789999999988887665      6899999875420 0   001111  11234456788888 77 44444454


Q ss_pred             cEEEEeCCCCcEEEEEeccCCCeeEEEEEecCceeeeccCCCcee
Q 014475          291 MVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHT  335 (424)
Q Consensus       291 ~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~d~~i~  335 (424)
                       |.+|+. +++.+..+..+. .+.+++|+|+++.|..++.++..+
T Consensus       260 -v~~~~~-~g~~~~~~~~~~-~~~~~~f~~d~~~L~it~~~~l~~  301 (305)
T 3dr2_A          260 -VCVFDS-DGQLLGHIPTPG-TASNCTFDQAQQRLFITGGPCLWM  301 (305)
T ss_dssp             -EEEECT-TSCEEEEEECSS-CCCEEEECTTSCEEEEEETTEEEE
T ss_pred             -EEEECC-CCCEEEEEECCC-ceeEEEEeCCCCEEEEEcCCeEEE
Confidence             999997 588888887655 589999999998888777665443

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=99.55  E-value=3.5e-12  Score=123.72  Aligned_cols=297  Identities=13%  Similarity=0.119  Sum_probs=188.1

Q ss_pred             EEeecCCCCCceEEEeCCCCceEEEeeCCCCCCCc------eEEecceeecCCCccccCCCCceeEEEEECCCCceeeee
Q 014475            4 LIASSSVADTGIGCWDLESGAEQLRYKSCASPPHG------LACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKS   77 (424)
Q Consensus         4 ~lat~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~------v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~~   77 (424)
                      .|+.++ .++.|.-+|.++|+.+-++.........      +..-.  ...++..+++++.+ +.|..+|..+++.....
T Consensus        79 ~vyv~~-~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~--~a~~~~~v~v~~~d-g~l~alD~~tG~~~W~~  154 (677)
T 1kb0_A           79 IMYVSA-SWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRG--VALWKGKVYVGAWD-GRLIALDAATGKEVWHQ  154 (677)
T ss_dssp             EEEEEC-GGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCC--CEEETTEEEEECTT-SEEEEEETTTCCEEEEE
T ss_pred             EEEEEC-CCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCC--ceEECCEEEEEcCC-CEEEEEECCCCCEEeee
Confidence            355566 6799999999999999877644321000      01111  22245566666666 99999999999887665


Q ss_pred             cCC------CCeeEEEECC--CCCEEEEecC------CCcEEEEEccCcceeeeeccccC--------------------
Q 014475           78 LPA------EPIKPIAANS--HGTYIAGGGQ------SGDIYMWEVASGRLLKKWHAHYR--------------------  123 (424)
Q Consensus        78 ~~~------~~v~~~~~s~--~~~~l~~~~~------dg~v~iwd~~~~~~~~~~~~~~~--------------------  123 (424)
                      ...      ..+.+   +|  .+..+++++.      +|.|+.+|.++|+.+..+.....                    
T Consensus       155 ~~~~~~~~~~~~~~---~p~v~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~  231 (677)
T 1kb0_A          155 NTFEGQKGSLTITG---APRVFKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDP  231 (677)
T ss_dssp             ETTTTCCSSCBCCS---CCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCG
T ss_pred             cCCcCcCcCccccc---CcEEECCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCccccccccccccccccccc
Confidence            432      11211   11  2345555543      68999999999998876643211                    


Q ss_pred             ------------CeEEEEEccCCcEEEEeeCCC-------------------cEEEEeCCcccchhcccccccceEEeec
Q 014475          124 ------------AVTCLVFSEDGSFLISGSEDG-------------------CVRIWSLLTVFEECESQRASHLYLHSFT  172 (424)
Q Consensus       124 ------------~i~~~~~~~~~~~l~s~~~dg-------------------~i~iwd~~~~~~~~~~~~~~~~~~~~~~  172 (424)
                                  ....+.++|++..++.+..++                   .|..+|.+++...         ......
T Consensus       232 ~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~---------W~~~~~  302 (677)
T 1kb0_A          232 SGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYK---------WHYQET  302 (677)
T ss_dssp             GGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEE---------EEEESS
T ss_pred             cCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEE---------EEEecC
Confidence                        113578888888888877664                   4888898774321         112222


Q ss_pred             CCc-------CceeEEEEEEcCc-eeEEEEEeCCCcEEEEecCCCceeeeeecCc------------ce-----------
Q 014475          173 GHT-------LRITDIVIGYGGV-SATIVSASEDRTCKVWSLLKGRLLRNIVFPS------------VI-----------  221 (424)
Q Consensus       173 ~~~-------~~i~~~~~~~~~~-~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~------------~i-----------  221 (424)
                      .|.       ....-+....++. ...++.++.+|.+.++|.++++.+..+....            ++           
T Consensus       303 ~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~  382 (677)
T 1kb0_A          303 PGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKP  382 (677)
T ss_dssp             TTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSC
T ss_pred             CCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCc
Confidence            221       1111122223431 1478899999999999999999887765211            01           


Q ss_pred             -------------eEEEECCCCCEEEEEeCC-------------------------------------------CcEEEE
Q 014475          222 -------------DAIALDPAEHVFYAGSRD-------------------------------------------GSIYIA  245 (424)
Q Consensus       222 -------------~~~~~~~~~~~l~~~~~d-------------------------------------------g~i~i~  245 (424)
                                   ..++++|+..++++...+                                           |.|..|
T Consensus       383 ~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~  462 (677)
T 1kb0_A          383 QDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAW  462 (677)
T ss_dssp             EECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEE
T ss_pred             cEECcCcccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEE
Confidence                         146788988888876542                                           678888


Q ss_pred             EcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCCCcEEEEEeccCC-CeeEEEEEecCc
Q 014475          246 ALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKG-PVNNILVVRRPL  323 (424)
Q Consensus       246 d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~-~v~~l~~s~~~~  323 (424)
                      |+.+++         .+-... +..++....+.. +..++.++.||.+++||.++++.+.++....+ ...-+.+..+|+
T Consensus       463 D~~tG~---------~~W~~~-~~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~y~~~G~  532 (677)
T 1kb0_A          463 DPVAQK---------AAWSVE-HVSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGR  532 (677)
T ss_dssp             ETTTTE---------EEEEEE-ESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTE
T ss_pred             eCCCCc---------EEeecC-CCCCCcCcceEeCCCEEEEECCCCcEEEEECCCCceeeeeeCCCCcccCCEEEEeCCE
Confidence            888763         222222 223333334444 78888899999999999999999999985443 334456778886


Q ss_pred             eee
Q 014475          324 YLN  326 (424)
Q Consensus       324 ~l~  326 (424)
                      .++
T Consensus       533 ~~v  535 (677)
T 1kb0_A          533 QYV  535 (677)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            544

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.55  E-value=1.6e-11  Score=108.65  Aligned_cols=227  Identities=13%  Similarity=0.049  Sum_probs=150.2

Q ss_pred             CeeEEEECCC-CCEEEEecCCCcEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcc
Q 014475           82 PIKPIAANSH-GTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECES  160 (424)
Q Consensus        82 ~v~~~~~s~~-~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~  160 (424)
                      -.....|+|+ +.++++...++.|..||..+++.. .+. ....+.++.|+++++++++. .+ .|.+||..++..    
T Consensus        50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~-~~~~v~~i~~~~dg~l~v~~-~~-gl~~~d~~~g~~----  121 (326)
T 2ghs_A           50 LGEGPTFDPASGTAWWFNILERELHELHLASGRKT-VHA-LPFMGSALAKISDSKQLIAS-DD-GLFLRDTATGVL----  121 (326)
T ss_dssp             BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEE-CSSCEEEEEEEETTEEEEEE-TT-EEEEEETTTCCE----
T ss_pred             CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEE-EEE-CCCcceEEEEeCCCeEEEEE-CC-CEEEEECCCCcE----
Confidence            3467789997 556666667889999999877543 232 34679999999999877654 44 499999865321    


Q ss_pred             cccccceEEeec--CCcCceeEEEEEEcCceeEEEEEeC------CCcEEEEecCCCceeeeeecCcceeEEEECCCCCE
Q 014475          161 QRASHLYLHSFT--GHTLRITDIVIGYGGVSATIVSASE------DRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHV  232 (424)
Q Consensus       161 ~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~~l~~~~~------d~~v~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~  232 (424)
                           ..+....  .....+.++++++++  ++.++...      .+.|..+|  +++.............++|+|+++.
T Consensus       122 -----~~~~~~~~~~~~~~~~~i~~d~~G--~l~v~~~~~~~~~~~~~l~~~~--~g~~~~~~~~~~~~~~i~~s~dg~~  192 (326)
T 2ghs_A          122 -----TLHAELESDLPGNRSNDGRMHPSG--ALWIGTMGRKAETGAGSIYHVA--KGKVTKLFADISIPNSICFSPDGTT  192 (326)
T ss_dssp             -----EEEECSSTTCTTEEEEEEEECTTS--CEEEEEEETTCCTTCEEEEEEE--TTEEEEEEEEESSEEEEEECTTSCE
T ss_pred             -----EEEeeCCCCCCCCCCCCEEECCCC--CEEEEeCCCcCCCCceEEEEEe--CCcEEEeeCCCcccCCeEEcCCCCE
Confidence                 1111111  112467889999887  55554432      24455555  4544333333345678999999987


Q ss_pred             EEEE-eCCCcEEEEEcC--CC-CCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCCCcEEEEEe
Q 014475          233 FYAG-SRDGSIYIAALN--AE-SPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFR  307 (424)
Q Consensus       233 l~~~-~~dg~i~i~d~~--~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~~~~~~  307 (424)
                      ++.+ +.++.|.+|+++  ++ ....    ......+......+..+++.+ +++.++...++.|..||. +++.+..+.
T Consensus       193 lyv~~~~~~~I~~~d~~~~~Gl~~~~----~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~  267 (326)
T 2ghs_A          193 GYFVDTKVNRLMRVPLDARTGLPTGK----AEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYE  267 (326)
T ss_dssp             EEEEETTTCEEEEEEBCTTTCCBSSC----CEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEE
T ss_pred             EEEEECCCCEEEEEEcccccCCcccC----ceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEEE
Confidence            7655 456899999986  33 2110    122222333345567899988 777777666788999998 688888888


Q ss_pred             ccCCCeeEEEEE-ecCceeeeccC
Q 014475          308 LAKGPVNNILVV-RRPLYLNLGSF  330 (424)
Q Consensus       308 ~~~~~v~~l~~s-~~~~~l~~~~~  330 (424)
                      .+...+++++|+ +++..|.+++.
T Consensus       268 ~~~~~~~~~af~g~d~~~L~vt~~  291 (326)
T 2ghs_A          268 VPGKQTTCPAFIGPDASRLLVTSA  291 (326)
T ss_dssp             CSCSBEEEEEEESTTSCEEEEEEB
T ss_pred             CCCCCcEEEEEecCCCCEEEEEec
Confidence            777789999999 88877755443

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.54  E-value=4e-13  Score=119.73  Aligned_cols=174  Identities=10%  Similarity=0.024  Sum_probs=130.2

Q ss_pred             CCCeeEEEECCCCCEEEEecCCCcEEEEEccCcc---------eee-eeccccCCeEEEEEccCCcEEEEeeCCCcEEEE
Q 014475           80 AEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGR---------LLK-KWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIW  149 (424)
Q Consensus        80 ~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~---------~~~-~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iw  149 (424)
                      ..+++.+++++...++++|+.++ +.+|++++..         ... ....+.. |+.++|  ++++|+++ .++.|++|
T Consensus        37 ~~~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~~~L~v~-~~~~l~v~  111 (388)
T 1xip_A           37 FASLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--HGDQVLVS-TRNALYSL  111 (388)
T ss_dssp             SSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--ETTEEEEE-ESSEEEEE
T ss_pred             cccccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--CCCEEEEE-cCCcEEEE
Confidence            34799999999999999999874 7779986543         111 2223556 999999  88999998 88999999


Q ss_pred             eCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeeecCcceeEEEECCC
Q 014475          150 SLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPA  229 (424)
Q Consensus       150 d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~i~~~~~~~~  229 (424)
                      |+.+..           .......|..++.++.+.+.    .+++++.||.|.+||+.+++...   +...|++++|+|+
T Consensus       112 dv~sl~-----------~~~~~~~~~~~v~~i~~~~p----~~av~~~dG~L~v~dl~~~~~~~---~~~~Vs~v~WSpk  173 (388)
T 1xip_A          112 DLEELS-----------EFRTVTSFEKPVFQLKNVNN----TLVILNSVNDLSALDLRTKSTKQ---LAQNVTSFDVTNS  173 (388)
T ss_dssp             ESSSTT-----------CEEEEEECSSCEEEEEECSS----EEEEEETTSEEEEEETTTCCEEE---EEESEEEEEECSS
T ss_pred             Echhhh-----------ccCccceeecceeeEEecCC----CEEEEECCCCEEEEEccCCcccc---ccCCceEEEEcCC
Confidence            996632           22234456667777665432    38888999999999999877643   4568999999999


Q ss_pred             CCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeee------c---ccCcCeEEEEecC-CCEEEE
Q 014475          230 EHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSL------S---DHSKAVTCLAYST-GDLLIS  285 (424)
Q Consensus       230 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~------~---~~~~~i~~~~~~~-~~~l~t  285 (424)
                      |  ++.|..||++++|+......       .....+      .   +|...|.++.|.+ +.++++
T Consensus       174 G--~~vg~~dg~i~~~~~~~~~~-------~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~  230 (388)
T 1xip_A          174 Q--LAVLLKDRSFQSFAWRNGEM-------EKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAV  230 (388)
T ss_dssp             E--EEEEETTSCEEEEEEETTEE-------EEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEE
T ss_pred             c--eEEEEcCCcEEEEcCCCccc-------cccceecCCcccccccCCCeeEEEEEEecCCeEEEE
Confidence            9  78899999999998877531       002222      2   4788999999998 777776

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=99.53  E-value=1.5e-12  Score=115.57  Aligned_cols=292  Identities=13%  Similarity=0.068  Sum_probs=183.0

Q ss_pred             EEeecCCCCCceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCceeeeecC-CCC
Q 014475            4 LIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSLP-AEP   82 (424)
Q Consensus         4 ~lat~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~~~~-~~~   82 (424)
                      .|..++ .++.|..|| .+++....+..   +...+..+.  ..+++...+ ++.  + |..+|. +++....... ...
T Consensus        32 ~l~v~t-~~~~l~~~d-~~g~~~~~~~~---~~~~~~~~~--~~~~g~l~v-~t~--~-l~~~d~-~g~~~~~~~~~~~~   99 (330)
T 3hxj_A           32 TIYLGS-SNKNLYAIN-TDGSVKWFFKS---GEIIECRPS--IGKDGTIYF-GSD--K-VYAINP-DGTEKWRFDTKKAI   99 (330)
T ss_dssp             CEECSS-TTTTTEEEC-TTSCEEESSCG---GGEEEECCE--ETTTTEECC-SSC--E-EEEECC-CGGGGGGSCC----
T ss_pred             eEEEEc-CCCEEEEEC-CCCcEEEEEec---CCCcccceE--EecCCcEEE-ecC--c-EEEECC-CCcEEEEEECCCCc
Confidence            355666 788999999 88887654432   112233333  445665443 333  5 888886 4443332222 222


Q ss_pred             eeEEEECCCCCEEEEecCCCcEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccc
Q 014475           83 IKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQR  162 (424)
Q Consensus        83 v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~  162 (424)
                      .....+.  +..+.+++.++.|..+|.. ++.......+...+.++...+++. +..++.++.|..+|.. +.       
T Consensus       100 ~~~~~~~--~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~-------  167 (330)
T 3hxj_A          100 VSDFTIF--EDILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDGT-IYVGSNDNYLYAINPD-GT-------  167 (330)
T ss_dssp             -CCEEEE--TTEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTSC-EEEECTTSEEEEECTT-SC-------
T ss_pred             ccCceEE--CCEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCCE-EEEEcCCCEEEEECCC-CC-------
Confidence            2233333  4557777888999999988 777666665555566777777776 5667778899999984 21       


Q ss_pred             cccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeee-cCcceeEEEECCCCCEEEEEeCCCc
Q 014475          163 ASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYAGSRDGS  241 (424)
Q Consensus       163 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~  241 (424)
                          ...........+.++...+++  . +..++  +.+..+| .+++...... ....+.++...+++. +++++.++.
T Consensus       168 ----~~~~~~~~~~~~~~~~~d~~g--~-l~v~t--~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~~g  236 (330)
T 3hxj_A          168 ----EKWRFKTNDAITSAASIGKDG--T-IYFGS--DKVYAIN-PDGTEKWNFYAGYWTVTRPAISEDGT-IYVTSLDGH  236 (330)
T ss_dssp             ----EEEEEECSSCCCSCCEECTTC--C-EEEES--SSEEEEC-TTSCEEEEECCSSCCCSCCEECTTSC-EEEEETTTE
T ss_pred             ----EeEEEecCCCceeeeEEcCCC--E-EEEEe--CEEEEEC-CCCcEEEEEccCCcceeceEECCCCe-EEEEcCCCe
Confidence                222233334455566655554  4 44555  7899999 7777666655 345677888888775 566777788


Q ss_pred             EEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecCCCEEEEeCCCCcEEEEeCCCCcEEEEEeccCCCeeEEEEEec
Q 014475          242 IYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTGDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRR  321 (424)
Q Consensus       242 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~  321 (424)
                      +..+|....          ...........+..+...++..|..++.+|.|..+|. +++.+..+......+.++...++
T Consensus       237 l~~~~~~g~----------~~~~~~~~~~~~~~~~~~~~g~l~v~t~~ggl~~~d~-~g~~~~~~~~~~~~~~~~~~d~~  305 (330)
T 3hxj_A          237 LYAINPDGT----------EKWRFKTGKRIESSPVIGNTDTIYFGSYDGHLYAINP-DGTEKWNFETGSWIIATPVIDEN  305 (330)
T ss_dssp             EEEECTTSC----------EEEEEECSSCCCSCCEECTTSCEEEECTTCEEEEECT-TSCEEEEEECSSCCCSCCEECTT
T ss_pred             EEEECCCCC----------EeEEeeCCCCccccceEcCCCeEEEecCCCCEEEECC-CCcEEEEEEcCCccccceEEcCC
Confidence            888874332          2222332333344455555566777888888999995 78888877766667788888777


Q ss_pred             CceeeeccCCCceeeccCCCC
Q 014475          322 PLYLNLGSFSNPHTSSRRHGS  342 (424)
Q Consensus       322 ~~~l~~~~~d~~i~iw~~~~~  342 (424)
                      +. |..++.+|.+++...+..
T Consensus       306 g~-l~~gt~~G~~~~~~~~~~  325 (330)
T 3hxj_A          306 GT-IYFGTRNGKFYALFNLEH  325 (330)
T ss_dssp             CC-EEEECTTSCEEEEEC---
T ss_pred             CE-EEEEcCCCeEEEEecccc
Confidence            75 556788999998776644

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.52  E-value=4.4e-13  Score=119.45  Aligned_cols=179  Identities=10%  Similarity=0.070  Sum_probs=132.7

Q ss_pred             CeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEE
Q 014475          124 AVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKV  203 (424)
Q Consensus       124 ~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~i  203 (424)
                      .++.+++++...++++|+.+ .+.+|++.+................. ..+.. |+.++|  ++  ..|+++ .++.|++
T Consensus        39 ~~nlLais~~~gll~a~~~~-~l~v~~~~~l~~~~~~~~~~~~~~~~-~~lp~-V~~l~f--d~--~~L~v~-~~~~l~v  110 (388)
T 1xip_A           39 SLQNLDISNSKSLFVAASGS-KAVVGELQLLRDHITSDSTPLTFKWE-KEIPD-VIFVCF--HG--DQVLVS-TRNALYS  110 (388)
T ss_dssp             CCBCEEEETTTTEEEEEETT-EEEEEEHHHHHHHHHSSSCCCCCSEE-EECTT-EEEEEE--ET--TEEEEE-ESSEEEE
T ss_pred             cccEEEEcCCCCEEEEeCCC-EEEEEEhhHhhhhhccccccccceEE-eeCCC-eeEEEE--CC--CEEEEE-cCCcEEE
Confidence            68999999999999999988 56679986644211111111111111 23555 999999  55  788888 8899999


Q ss_pred             EecCCCceeeeee-cCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CC
Q 014475          204 WSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GD  281 (424)
Q Consensus       204 wd~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~  281 (424)
                      ||+++........ +...+.++.+.+..  +++++.||.+.+||+....         ..    .+...|++++|+| | 
T Consensus       111 ~dv~sl~~~~~~~~~~~~v~~i~~~~p~--~av~~~dG~L~v~dl~~~~---------~~----~~~~~Vs~v~WSpkG-  174 (388)
T 1xip_A          111 LDLEELSEFRTVTSFEKPVFQLKNVNNT--LVILNSVNDLSALDLRTKS---------TK----QLAQNVTSFDVTNSQ-  174 (388)
T ss_dssp             EESSSTTCEEEEEECSSCEEEEEECSSE--EEEEETTSEEEEEETTTCC---------EE----EEEESEEEEEECSSE-
T ss_pred             EEchhhhccCccceeecceeeEEecCCC--EEEEECCCCEEEEEccCCc---------cc----cccCCceEEEEcCCc-
Confidence            9998766544443 56677777766543  8889999999999999763         11    1456899999999 6 


Q ss_pred             EEEEeCCCCcEEEEeCCCCcE--EEEE------e---ccCCCeeEEEEEecCceeee
Q 014475          282 LLISGSEDGMVRVWDPITHNI--VRMF------R---LAKGPVNNILVVRRPLYLNL  327 (424)
Q Consensus       282 ~l~t~~~dg~i~iwd~~~~~~--~~~~------~---~~~~~v~~l~~s~~~~~l~~  327 (424)
                       ++.|..||++++|+...++.  .+++      .   +|...|.++.|.+++.++++
T Consensus       175 -~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~  230 (388)
T 1xip_A          175 -LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAV  230 (388)
T ss_dssp             -EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEE
T ss_pred             -eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEE
Confidence             77888999999999887775  6666      2   36788999999999999886

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.50  E-value=3e-11  Score=105.47  Aligned_cols=218  Identities=10%  Similarity=0.101  Sum_probs=143.4

Q ss_pred             eecCCCccccCCCCceeEEEEECCCCceeeeecCCCCeeEEEECCCCCEEEEecCCCcEEEEEccCcceeeeecc----c
Q 014475           46 FLASSQLREQPSASSGSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHA----H  121 (424)
Q Consensus        46 ~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~----~  121 (424)
                      |++++..+..+...++.|..||..+++... ......+.+++++|+|+++++.  ++.|.+||.++++.......    .
T Consensus        20 w~~~~~~l~~~d~~~~~i~~~d~~~~~~~~-~~~~~~~~~i~~~~dG~l~v~~--~~~l~~~d~~~g~~~~~~~~~~~~~   96 (297)
T 3g4e_A           20 WEEVSNSLLFVDIPAKKVCRWDSFTKQVQR-VTMDAPVSSVALRQSGGYVATI--GTKFCALNWKEQSAVVLATVDNDKK   96 (297)
T ss_dssp             EETTTTEEEEEETTTTEEEEEETTTCCEEE-EECSSCEEEEEEBTTSSEEEEE--TTEEEEEETTTTEEEEEEECCTTCS
T ss_pred             EECCCCEEEEEECCCCEEEEEECCCCcEEE-EeCCCceEEEEECCCCCEEEEE--CCeEEEEECCCCcEEEEEecCCCCC
Confidence            888655555444434899999998776532 3346789999999999965553  46799999987765432221    1


Q ss_pred             cCCeEEEEEccCCcEEEEeeCC---------CcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEE
Q 014475          122 YRAVTCLVFSEDGSFLISGSED---------GCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATI  192 (424)
Q Consensus       122 ~~~i~~~~~~~~~~~l~s~~~d---------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l  192 (424)
                      ...++.++++|+|+++++...+         ..-.+|.+...          .. ......+....+.++|++++  +.+
T Consensus        97 ~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~----------g~-~~~~~~~~~~pngi~~spdg--~~l  163 (297)
T 3g4e_A           97 NNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPD----------HH-VKKYFDQVDISNGLDWSLDH--KIF  163 (297)
T ss_dssp             SEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTT----------SC-EEEEEEEESBEEEEEECTTS--CEE
T ss_pred             CCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECC----------CC-EEEEeeccccccceEEcCCC--CEE
Confidence            2357889999999977654322         22345544321          01 11122233456789999988  544


Q ss_pred             -EEEeCCCcEEEEec--CCCcee--eee---e-cCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeee
Q 014475          193 -VSASEDRTCKVWSL--LKGRLL--RNI---V-FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIG  263 (424)
Q Consensus       193 -~~~~~d~~v~iwd~--~~~~~~--~~~---~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~  263 (424)
                       ++.+.++.|..||+  .++...  ..+   . .......++++++|++.++....+.|..||..++         +.+.
T Consensus       164 yv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG---------~~~~  234 (297)
T 3g4e_A          164 YYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTG---------KRLQ  234 (297)
T ss_dssp             EEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTC---------CEEE
T ss_pred             EEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCc---------eEEE
Confidence             55666789999997  455432  112   1 2356789999999987777777888999999865         4455


Q ss_pred             eecccCcCeEEEEec-C-CC-EEEEeCC
Q 014475          264 SLSDHSKAVTCLAYS-T-GD-LLISGSE  288 (424)
Q Consensus       264 ~~~~~~~~i~~~~~~-~-~~-~l~t~~~  288 (424)
                      .+..+...+++++|. | ++ ++++...
T Consensus       235 ~i~~p~~~~t~~~f~g~d~~~L~vt~~~  262 (297)
T 3g4e_A          235 TVKLPVDKTTSCCFGGKNYSEMYVTCAR  262 (297)
T ss_dssp             EEECSSSBEEEEEEESGGGCEEEEEEBC
T ss_pred             EEECCCCCceEEEEeCCCCCEEEEEcCC
Confidence            666666789999998 6 44 4444443

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.47  E-value=3.2e-12  Score=125.05  Aligned_cols=242  Identities=14%  Similarity=0.079  Sum_probs=154.6

Q ss_pred             CCCeeEEEECCCCCEEEEe-----cCCCcEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEeeCCCc---------
Q 014475           80 AEPIKPIAANSHGTYIAGG-----GQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGC---------  145 (424)
Q Consensus        80 ~~~v~~~~~s~~~~~l~~~-----~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~---------  145 (424)
                      ...+..++|||||++||.+     +....|++||+.+++.+.... +......++|+ |++.|+.++.+..         
T Consensus       128 ~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~-~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~  205 (693)
T 3iuj_A          128 TTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPL-KDVKFSGISWL-GNEGFFYSSYDKPDGSELSART  205 (693)
T ss_dssp             CCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEE-EEEESCCCEEE-TTTEEEEEESSCCC-------C
T ss_pred             cEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcccc-CCceeccEEEe-CCCEEEEEEecCcccccccccC
Confidence            3468889999999999853     333579999999998654311 11113567899 9999998887743         


Q ss_pred             ----EEEEeCCcccchhcccccccceEEeecC-CcCceeEEEEEEcCceeEEE-EEeC---CCcEEEEecCCCc-eeeee
Q 014475          146 ----VRIWSLLTVFEECESQRASHLYLHSFTG-HTLRITDIVIGYGGVSATIV-SASE---DRTCKVWSLLKGR-LLRNI  215 (424)
Q Consensus       146 ----i~iwd~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~l~-~~~~---d~~v~iwd~~~~~-~~~~~  215 (424)
                          |++|++.+...       ....+..... |......+.+++++  ++|+ +.+.   +..|.++|+.++. ....+
T Consensus       206 ~~~~v~~~~lgt~~~-------~~~~v~~~~~~~~~~~~~~~~SpDg--~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l  276 (693)
T 3iuj_A          206 DQHKVYFHRLGTAQE-------DDRLVFGAIPAQHHRYVGATVTEDD--RFLLISAANSTSGNRLYVKDLSQENAPLLTV  276 (693)
T ss_dssp             CCCEEEEEETTSCGG-------GCEEEESCSGGGCCSEEEEEECTTS--CEEEEEEESSSSCCEEEEEETTSTTCCCEEE
T ss_pred             CCcEEEEEECCCCcc-------cceEEEecCCCCCeEEEEEEEcCCC--CEEEEEEccCCCCcEEEEEECCCCCCceEEE
Confidence                99999866321       1123333333 44556788899998  5554 3332   3589999998763 33344


Q ss_pred             e-cCcceeEEEECCCCCEEEEEeC-C---CcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCC-
Q 014475          216 V-FPSVIDAIALDPAEHVFYAGSR-D---GSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSE-  288 (424)
Q Consensus       216 ~-~~~~i~~~~~~~~~~~l~~~~~-d---g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~-  288 (424)
                      . ........ +++++..|+..+. +   +.|..+|+.+...       .....+..|...+.  .|++ ++.|+.... 
T Consensus       277 ~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~-------~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~  346 (693)
T 3iuj_A          277 QGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGP-------AHWRDLIPERQQVL--TVHSGSGYLFAEYMV  346 (693)
T ss_dssp             ECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCG-------GGCEEEECCCSSCE--EEEEETTEEEEEEEE
T ss_pred             eCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCc-------cccEEEecCCCCEE--EEEEECCEEEEEEEE
Confidence            3 33434443 6666666655443 3   5788999887531       11223444555554  7788 777766654 


Q ss_pred             CC--cEEEEeCCCCcEEEEEec-cCCCeeEEEEEecCceeeeccCC----CceeeccCCCCC
Q 014475          289 DG--MVRVWDPITHNIVRMFRL-AKGPVNNILVVRRPLYLNLGSFS----NPHTSSRRHGSQ  343 (424)
Q Consensus       289 dg--~i~iwd~~~~~~~~~~~~-~~~~v~~l~~s~~~~~l~~~~~d----~~i~iw~~~~~~  343 (424)
                      ++  .|++||+.. .....+.. ..+.+..+.+++++..|+....+    +.+..|++.+++
T Consensus       347 ~g~~~l~~~d~~g-~~~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~  407 (693)
T 3iuj_A          347 DATARVEQFDYEG-KRVREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGA  407 (693)
T ss_dssp             TTEEEEEEECTTS-CEEEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCC
T ss_pred             CCeeEEEEEECCC-CeeEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCe
Confidence            44  689999874 44555543 34567778888888877655444    778888887654

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=99.46  E-value=7.1e-12  Score=111.46  Aligned_cols=267  Identities=9%  Similarity=-0.068  Sum_probs=174.5

Q ss_pred             ceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCC---------CCceeEEEEECCCCceeeeec-C----
Q 014475           14 GIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPS---------ASSGSILYWSWSKPQVEVKSL-P----   79 (424)
Q Consensus        14 ~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~---------~~~g~i~vwd~~~~~~~~~~~-~----   79 (424)
                      +|.+.|..+++.+.++.....+     .+.  ++|+++.+.++.         ..++.|.+||..+.+...... .    
T Consensus        47 ~vsvID~~t~~v~~~i~vG~~P-----~i~--~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~  119 (368)
T 1mda_H           47 ENWVSCAGCGVTLGHSLGAFLS-----LAV--AGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPR  119 (368)
T ss_dssp             EEEEEETTTTEEEEEEEECTTC-----EEE--ECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCS
T ss_pred             eEEEEECCCCeEEEEEeCCCCC-----ceE--ECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccc
Confidence            7889999999999999866543     344  999999999886         335899999999988765432 2    


Q ss_pred             ---CCCeeEEEECCCCCEEEEecC--CCcEEE--EEccCcceeeeeccccCCeEEEEEccCC-cEEEEeeCCCcEEEEeC
Q 014475           80 ---AEPIKPIAANSHGTYIAGGGQ--SGDIYM--WEVASGRLLKKWHAHYRAVTCLVFSEDG-SFLISGSEDGCVRIWSL  151 (424)
Q Consensus        80 ---~~~v~~~~~s~~~~~l~~~~~--dg~v~i--wd~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~s~~~dg~i~iwd~  151 (424)
                         ......++++|||++++++..  +..|.+  +|+.+   +..+... +.   ..+.|++ ..+++.+.||.+.+.|+
T Consensus       120 ~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~-~~---~~~~p~g~~~~~~~~~dg~~~~vd~  192 (368)
T 1mda_H          120 FSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSA-SC---FHIHPGAAATHYLGSCPASLAASDL  192 (368)
T ss_dssp             CCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECS-SC---CCCEEEETTEEECCCCTTSCEEEEC
T ss_pred             cccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECC-Cc---eEEccCCCeEEEEEcCCCCEEEEEC
Confidence               134679999999999998864  456888  99877   3444321 11   1223433 34566677888888888


Q ss_pred             Cc-----ccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCc--eeeeeec-------
Q 014475          152 LT-----VFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGR--LLRNIVF-------  217 (424)
Q Consensus       152 ~~-----~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~--~~~~~~~-------  217 (424)
                      .+     +......   .    ..+.....+.   . .+++  ..++..+. +.+.+.|..+..  .+..+..       
T Consensus       193 ~~~~~~~~~v~~~~---t----~~i~vg~~P~---~-~~~~--~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~  258 (368)
T 1mda_H          193 AAAPAAAGIVGAQC---T----GAQNCSSQAA---Q-ANYP--GMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKA  258 (368)
T ss_dssp             CSSCCCCEECCCCS---C----TTSCBCSCCE---E-ETTT--TEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHH
T ss_pred             ccccccCCeEEEEe---e----eeeeCCCCcc---c-cccC--CEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccc
Confidence            65     2110000   0    0011112232   2 4444  44444555 899999986532  2222221       


Q ss_pred             ----CcceeEEEECCCCCEEEEEeC-C--------CcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CC-E
Q 014475          218 ----PSVIDAIALDPAEHVFYAGSR-D--------GSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GD-L  282 (424)
Q Consensus       218 ----~~~i~~~~~~~~~~~l~~~~~-d--------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~-~  282 (424)
                          +.....++++|+++.++++.. .        +.+.++|+.+.         +.+..+.... ....++++| ++ .
T Consensus       259 ~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~---------~vv~~i~vg~-~p~gi~~s~Dg~~l  328 (368)
T 1mda_H          259 DNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVG---------QTSGPISNGH-DSDAIIAAQDGASD  328 (368)
T ss_dssp             TTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSC---------CEEECCEEEE-EECEEEECCSSSCE
T ss_pred             cccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCC---------eEEEEEECCC-CcceEEECCCCCEE
Confidence                122233789999998887643 2        35679999986         3444444332 578899999 65 5


Q ss_pred             EEEeC-CCCcEEEEeCCCCcEEEEEeccCCCeeEEEEE
Q 014475          283 LISGS-EDGMVRVWDPITHNIVRMFRLAKGPVNNILVV  319 (424)
Q Consensus       283 l~t~~-~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s  319 (424)
                      +++.. .++.|.++|+.+++.+.++.....+ ..+++.
T Consensus       329 ~va~~~~~~~VsVID~~t~kvv~~I~vg~~P-~~i~~~  365 (368)
T 1mda_H          329 NYANSAGTEVLDIYDAASDQDQSSVELDKGP-ESLSVQ  365 (368)
T ss_dssp             EEEEETTTTEEEEEESSSCEEEEECCCCSCC-CEEECC
T ss_pred             EEEccCCCCeEEEEECCCCcEEEEEECCCCC-CEEEee
Confidence            66666 5999999999999999999865443 445443

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.46  E-value=2e-11  Score=119.46  Aligned_cols=239  Identities=10%  Similarity=0.039  Sum_probs=153.2

Q ss_pred             CceEEecceeecCCCccccC----CCCceeEEEEECCCCceeeeecCCCCeeEEEECCCCCEEEEecCCCc---------
Q 014475           37 HGLACVGQRFLASSQLREQP----SASSGSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGD---------  103 (424)
Q Consensus        37 ~~v~~~~~~~~~~~~~l~~~----~~~~g~i~vwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~---------  103 (424)
                      ..+..+.  |+|||+++|.+    +.+...|++||+.+++......+......++|+ |++.|+.++.+..         
T Consensus       129 ~~l~~~~--~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~  205 (693)
T 3iuj_A          129 TALDQLS--FSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPLKDVKFSGISWL-GNEGFFYSSYDKPDGSELSART  205 (693)
T ss_dssp             CEEEEEE--ECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEEEEESCCCEEE-TTTEEEEEESSCCC-------C
T ss_pred             EEEEEEE--ECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccccCCceeccEEEe-CCCEEEEEEecCcccccccccC
Confidence            3566666  99999999843    333478999999998864432222224678999 9999998877643         


Q ss_pred             ----EEEEEccCcce----eeeecc-ccCCeEEEEEccCCcEEEEeeC----CCcEEEEeCCcccchhcccccccceEEe
Q 014475          104 ----IYMWEVASGRL----LKKWHA-HYRAVTCLVFSEDGSFLISGSE----DGCVRIWSLLTVFEECESQRASHLYLHS  170 (424)
Q Consensus       104 ----v~iwd~~~~~~----~~~~~~-~~~~i~~~~~~~~~~~l~s~~~----dg~i~iwd~~~~~~~~~~~~~~~~~~~~  170 (424)
                          |++|++.++..    +..... |......+.|+||+++|+....    +..|+++|+.++.         . ....
T Consensus       206 ~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~---------~-~~~~  275 (693)
T 3iuj_A          206 DQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQEN---------A-PLLT  275 (693)
T ss_dssp             CCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTT---------C-CCEE
T ss_pred             CCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCC---------C-ceEE
Confidence                99999977642    333333 4556788999999998865432    3489999986521         1 1223


Q ss_pred             ecCCcCceeEEEEEEcCceeEEEEEeCC---CcEEEEecCCCce---eeeeecCcceeEEEECCCCCEEEEEeCCC---c
Q 014475          171 FTGHTLRITDIVIGYGGVSATIVSASED---RTCKVWSLLKGRL---LRNIVFPSVIDAIALDPAEHVFYAGSRDG---S  241 (424)
Q Consensus       171 ~~~~~~~i~~~~~~~~~~~~~l~~~~~d---~~v~iwd~~~~~~---~~~~~~~~~i~~~~~~~~~~~l~~~~~dg---~  241 (424)
                      +..+....... +++++. .+++.+..+   +.|..+|+.++..   .....+...+.  .|+++++.|+....++   .
T Consensus       276 l~~~~~~~~~~-~~~~g~-~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~~~  351 (693)
T 3iuj_A          276 VQGDLDADVSL-VDNKGS-TLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYMVDATAR  351 (693)
T ss_dssp             EECSSSSCEEE-EEEETT-EEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEEEEETTEEE
T ss_pred             EeCCCCceEEE-EeccCC-EEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEEEEEECCeeE
Confidence            44455544444 556653 455555443   5799999987654   22233444443  8889888887765543   6


Q ss_pred             EEEEEcCCCCCCCCCcCceeeeeec-ccCcCeEEEEecC-CCEEEEeCCC----CcEEEEeCCCCcE
Q 014475          242 IYIAALNAESPSTSSYGMHIIGSLS-DHSKAVTCLAYST-GDLLISGSED----GMVRVWDPITHNI  302 (424)
Q Consensus       242 i~i~d~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~-~~~l~t~~~d----g~i~iwd~~~~~~  302 (424)
                      |++|++....          ...+. .+...+..+.+++ ++.++....+    +.|..||+.+++.
T Consensus       352 l~~~d~~g~~----------~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~  408 (693)
T 3iuj_A          352 VEQFDYEGKR----------VREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGAI  408 (693)
T ss_dssp             EEEECTTSCE----------EEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCCE
T ss_pred             EEEEECCCCe----------eEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCeE
Confidence            8888887532          22222 2344566777777 5544443333    7899999987763

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.45  E-value=4.7e-11  Score=106.44  Aligned_cols=245  Identities=9%  Similarity=0.016  Sum_probs=157.5

Q ss_pred             CCeeEEEECCCCCEEEEec--CCCcEEEEEccCcceeeee-------ccccCCeEEEEEccCCcEEEEeeC-----CCcE
Q 014475           81 EPIKPIAANSHGTYIAGGG--QSGDIYMWEVASGRLLKKW-------HAHYRAVTCLVFSEDGSFLISGSE-----DGCV  146 (424)
Q Consensus        81 ~~v~~~~~s~~~~~l~~~~--~dg~v~iwd~~~~~~~~~~-------~~~~~~i~~~~~~~~~~~l~s~~~-----dg~i  146 (424)
                      ..+..++++|+|+++++..  .++.++||.+.+++.. .+       ..+...+..++++++++++++-..     ++.|
T Consensus        17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~~-~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i   95 (343)
T 2qe8_A           17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGLI-PFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKL   95 (343)
T ss_dssp             SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEEE-ESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEE
T ss_pred             CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCee-cCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeE
Confidence            6789999999999988853  2343555655555432 22       234568999999999886665443     5789


Q ss_pred             EEEeCCcccchhcccccccceEEeec------CCcCceeEEEEEEcCceeEEEEEe---CCCcEEEEecCCCceeeeeec
Q 014475          147 RIWSLLTVFEECESQRASHLYLHSFT------GHTLRITDIVIGYGGVSATIVSAS---EDRTCKVWSLLKGRLLRNIVF  217 (424)
Q Consensus       147 ~iwd~~~~~~~~~~~~~~~~~~~~~~------~~~~~i~~~~~~~~~~~~~l~~~~---~d~~v~iwd~~~~~~~~~~~~  217 (424)
                      .+||+.++.           .+..+.      .+...+..+++++++. ..+++-.   .++.|.+||+.+++..+.+..
T Consensus        96 ~~~d~~tg~-----------~~~~~~~~~~~~~~~~~~~~v~vd~~~g-~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~  163 (343)
T 2qe8_A           96 VAWDTLNNQ-----------LSRVIYLPPPITLSNSFVNDLAVDLIHN-FVYISDPAPDDKAALIRVDLQTGLAARVLQG  163 (343)
T ss_dssp             EEEETTTTE-----------EEEEEECCTTTSCTTCCCCEEEEETTTT-EEEEEECCSGGGCEEEEEETTTCCEEEECTT
T ss_pred             EEEECCCCe-----------EEEEEECChhhcccccccceEEEecCCC-EEEEEcCccCCCCeEEEEECCCCCEEEEecC
Confidence            999996532           111111      2234568899987542 4555555   678999999987765554321


Q ss_pred             ------------------------------CcceeEEEECCCCCEEEEEeCCC-cEEEEEcCCCCCCCCCcCceeee--e
Q 014475          218 ------------------------------PSVIDAIALDPAEHVFYAGSRDG-SIYIAALNAESPSTSSYGMHIIG--S  264 (424)
Q Consensus       218 ------------------------------~~~i~~~~~~~~~~~l~~~~~dg-~i~i~d~~~~~~~~~~~~~~~~~--~  264 (424)
                                                    ...+..++++|+++.|+++...+ .++.++......... ...+...  .
T Consensus       164 ~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~  242 (343)
T 2qe8_A          164 YPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQL-TDAELGSKIE  242 (343)
T ss_dssp             CTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTC-CHHHHHTTCE
T ss_pred             CCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCC-ChhhhhcceE
Confidence                                          02357899999999888887666 555555321100000 0000000  1


Q ss_pred             ecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCCCcEEEEEec-cCCCeeEEEEEecCceeeeccCCCceeeccC
Q 014475          265 LSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRL-AKGPVNNILVVRRPLYLNLGSFSNPHTSSRR  339 (424)
Q Consensus       265 ~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~~~~~~~-~~~~v~~l~~s~~~~~l~~~~~d~~i~iw~~  339 (424)
                      ..++......+++++ +.++++...++.|.+||..+++....... +.....+++|.+++.++++.+..+.+.+|..
T Consensus       243 ~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~~g~l~v~~~~~~~~~~f~~  319 (343)
T 2qe8_A          243 RYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDEKLSWTDSFNFGSDGYLYFDCNQLHHSAPLNA  319 (343)
T ss_dssp             EEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECGGGSCEEEEEECTTSCEEEEECCGGGSGGGBT
T ss_pred             ecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECCceecCCeeEECCCCcEEEEeCcccccccccc
Confidence            113344567789999 88999988899999999856764333332 2346889999999988888776666666653

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=99.43  E-value=3.3e-12  Score=113.60  Aligned_cols=250  Identities=9%  Similarity=-0.095  Sum_probs=165.9

Q ss_pred             eEEEEECCCCceeeeecC-CCCeeEEEECCCCCEEEEec----------CCCcEEEEEccCcceeeeeccc-------cC
Q 014475           62 SILYWSWSKPQVEVKSLP-AEPIKPIAANSHGTYIAGGG----------QSGDIYMWEVASGRLLKKWHAH-------YR  123 (424)
Q Consensus        62 ~i~vwd~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~----------~dg~v~iwd~~~~~~~~~~~~~-------~~  123 (424)
                      .|.+.|..+.+......- ..+  .+.++||+++++++.          .++.|.+||+.+++.+.++..+       ..
T Consensus        47 ~vsvID~~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~  124 (368)
T 1mda_H           47 ENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGP  124 (368)
T ss_dssp             EEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSC
T ss_pred             eEEEEECCCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCC
Confidence            889999999887655432 334  799999999998885          3678999999999999888643       13


Q ss_pred             CeEEEEEccCCcEEEEeeC--CCcEEE--EeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCC
Q 014475          124 AVTCLVFSEDGSFLISGSE--DGCVRI--WSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDR  199 (424)
Q Consensus       124 ~i~~~~~~~~~~~l~s~~~--dg~i~i--wd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~  199 (424)
                      ....+.++|||++++++..  +..+.+  +|..+              +..+... ..   ..+.|++. ..+++.+.|+
T Consensus       125 ~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t--------------v~~i~v~-~~---~~~~p~g~-~~~~~~~~dg  185 (368)
T 1mda_H          125 RVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD--------------DQLTKSA-SC---FHIHPGAA-ATHYLGSCPA  185 (368)
T ss_dssp             CTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE--------------EEEEECS-SC---CCCEEEET-TEEECCCCTT
T ss_pred             CcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh--------------ceEEECC-Cc---eEEccCCC-eEEEEEcCCC
Confidence            4668999999999998864  356888  88844              1122111 11   12345543 4556777889


Q ss_pred             cEEEEecCC-----Cceee----eee-cCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeec---
Q 014475          200 TCKVWSLLK-----GRLLR----NIV-FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLS---  266 (424)
Q Consensus       200 ~v~iwd~~~-----~~~~~----~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~---  266 (424)
                      .+.+.|+.+     ++...    .+. ...+.   . .+++..++..+. +.+.+.|......       ..+..+.   
T Consensus       186 ~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~---~-~~~~~~~~~vs~-~~V~viD~~~~~~-------~v~~~~~~~~  253 (368)
T 1mda_H          186 SLAASDLAAAPAAAGIVGAQCTGAQNCSSQAA---Q-ANYPGMLVWAVA-SSILQGDIPAAGA-------TMKAAIDGNE  253 (368)
T ss_dssp             SCEEEECCSSCCCCEECCCCSCTTSCBCSCCE---E-ETTTTEEEECBS-SCCEEEECCSSCC-------EEECCCCSSC
T ss_pred             CEEEEECccccccCCeEEEEeeeeeeCCCCcc---c-cccCCEEEEEcC-CEEEEEECCCCcc-------eEEEEEEecc
Confidence            988899886     44331    111 12222   3 555666665556 9999999965321       1111110   


Q ss_pred             ----c---cCcCeEEEEecC-CCEEEEeCC---------CCcEEEEeCCCCcEEEEEeccCCCeeEEEEEecCcee-eec
Q 014475          267 ----D---HSKAVTCLAYST-GDLLISGSE---------DGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYL-NLG  328 (424)
Q Consensus       267 ----~---~~~~i~~~~~~~-~~~l~t~~~---------dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l-~~~  328 (424)
                          .   .......++++| ++.++.+..         ++.+.++|+.+++.+.++.... ....++|+|||+++ ++.
T Consensus       254 ~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~-~p~gi~~s~Dg~~l~va~  332 (368)
T 1mda_H          254 SGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGH-DSDAIIAAQDGASDNYAN  332 (368)
T ss_dssp             THHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEE-EECEEEECCSSSCEEEEE
T ss_pred             ccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCC-CcceEEECCCCCEEEEEc
Confidence                0   111122267888 666665422         2356699999999999887544 57899999999854 555


Q ss_pred             c-CCCceeeccCCCCCCC
Q 014475          329 S-FSNPHTSSRRHGSQLP  345 (424)
Q Consensus       329 ~-~d~~i~iw~~~~~~~~  345 (424)
                      . .++.|.++|+.+.+..
T Consensus       333 ~~~~~~VsVID~~t~kvv  350 (368)
T 1mda_H          333 SAGTEVLDIYDAASDQDQ  350 (368)
T ss_dssp             ETTTTEEEEEESSSCEEE
T ss_pred             cCCCCeEEEEECCCCcEE
Confidence            5 5899999999977643

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=99.42  E-value=6.3e-11  Score=109.61  Aligned_cols=305  Identities=11%  Similarity=0.028  Sum_probs=206.9

Q ss_pred             EEEeecCCCCCceEEEeCCCCceEEEeeCCCC------------------------------------CCCceEEeccee
Q 014475            3 LLIASSSVADTGIGCWDLESGAEQLRYKSCAS------------------------------------PPHGLACVGQRF   46 (424)
Q Consensus         3 ~~lat~~~~dg~i~vwd~~~~~~~~~~~~~~~------------------------------------~~~~v~~~~~~~   46 (424)
                      ..+.||+ ..|.|+|+-+.+++.++.+.-...                                    .........  .
T Consensus        16 ~~f~s~g-~~g~~~v~g~ps~r~~~~i~vf~~~~~~g~g~~~es~~~l~~~~~~~~~~~~~~~g~~~~~~gd~hh~~--~   92 (595)
T 1fwx_A           16 YGFWSSG-QSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHDNGDLHHVH--M   92 (595)
T ss_dssp             EEEECCB-TTCEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCCHHHHHHHHHTTCSSCCCCCBCCEE--E
T ss_pred             EEEeeCC-cCceEEEEecCCcceEEEeeeecCCCCcccCCchhHHHHHhccCCccchhhhhccCceecccCCCCccc--c
Confidence            3467788 999999999999999987753211                                    011122233  4


Q ss_pred             ec-----CCCccccCCCCceeEEEEECCCCceee--eecCCCCeeEEEE-C-CCCCEEEEec------------------
Q 014475           47 LA-----SSQLREQPSASSGSILYWSWSKPQVEV--KSLPAEPIKPIAA-N-SHGTYIAGGG------------------   99 (424)
Q Consensus        47 ~~-----~~~~l~~~~~~~g~i~vwd~~~~~~~~--~~~~~~~v~~~~~-s-~~~~~l~~~~------------------   99 (424)
                      +.     ||+++.+...+++.|.+.|+++.+...  ..........+++ + |+++++++++                  
T Consensus        93 s~t~g~~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~  172 (595)
T 1fwx_A           93 SFTEGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVAN  172 (595)
T ss_dssp             EEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGG
T ss_pred             CCCCCCcCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccc
Confidence            44     899999888877899999999987553  3333567889998 5 9999998884                  


Q ss_pred             CCCcEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEeeCCC---------------cEEEEeCCcccchhcccccc
Q 014475          100 QSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDG---------------CVRIWSLLTVFEECESQRAS  164 (424)
Q Consensus       100 ~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg---------------~i~iwd~~~~~~~~~~~~~~  164 (424)
                      .++.+.+.|.++.+...++.... ....+.++|+|+++++.+.+.               .|.+.|.....         
T Consensus       173 ~~~~vtvID~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~---------  242 (595)
T 1fwx_A          173 YVNVFTAVDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIE---------  242 (595)
T ss_dssp             EEEEEEEEETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHH---------
T ss_pred             cCceEEEEECCCCeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeecccee---------
Confidence            34579999999998888876433 456788999999999888663               24444432110         


Q ss_pred             cceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCC--Cce-eeeeecCcceeEEEECCCCCEEEEEe-CCC
Q 014475          165 HLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLK--GRL-LRNIVFPSVIDAIALDPAEHVFYAGS-RDG  240 (424)
Q Consensus       165 ~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~--~~~-~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg  240 (424)
                                       .+.+++...++      +.|.+.|.++  ++. +..+..+....++.++|||+++++++ .+.
T Consensus       243 -----------------~~v~~Gk~~~i------~~V~VID~~~~~~~~~~~~Ipvg~~PhGv~~sPDGk~v~V~~~~s~  299 (595)
T 1fwx_A          243 -----------------KAIAAGDYQEL------NGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSP  299 (595)
T ss_dssp             -----------------HHHHHTCSEEE------TTEEEEECSGGGCCSSEEEEEEESSCCCEEECTTSSEEEEECTTSS
T ss_pred             -----------------EeccCCCeeEE------CcEEEEeCcccCCceeEEEEecCCCceEEEEcCCCCEEEEeCCCCC
Confidence                             01122321222      5599999998  555 56777777889999999999888766 577


Q ss_pred             cEEEEEcCCCCCC---CCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCC----------CcEEEEE
Q 014475          241 SIYIAALNAESPS---TSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPIT----------HNIVRMF  306 (424)
Q Consensus       241 ~i~i~d~~~~~~~---~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~----------~~~~~~~  306 (424)
                      +|.++|+.+....   ............. -......++|+| |...++.-.|+.|.+||+.+          .+.+.++
T Consensus       300 ~VsVid~~~~~~~~~~~l~~~~~v~~~v~-vG~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~ki  378 (595)
T 1fwx_A          300 TVTVLDVTRFDAVFYENADPRSAVVAEPE-LGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKL  378 (595)
T ss_dssp             BEEEEEGGGHHHHHHSCCCGGGGEEECCB-CCSCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEE
T ss_pred             eEEEEECcccccccccccCcccceEEEcC-CCCCcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEe
Confidence            9999999864100   0000011222222 234578899999 85556677899999999987          5677888


Q ss_pred             eccCCCe-----eEEEEEecCceeeecc---CCCce----------eeccCCCCCC
Q 014475          307 RLAKGPV-----NNILVVRRPLYLNLGS---FSNPH----------TSSRRHGSQL  344 (424)
Q Consensus       307 ~~~~~~v-----~~l~~s~~~~~l~~~~---~d~~i----------~iw~~~~~~~  344 (424)
                      ..|-.+-     ..+.++|||++|+++.   .|..+          .+.|+.+.++
T Consensus       379 dV~yqpGh~~~~~g~t~~~DGk~l~~~Nk~skdr~~~~gp~~~~~~ql~dis~~~m  434 (595)
T 1fwx_A          379 DVHYQPGHLKTVMGETLDATNDWLVCLSKFSKDRFLNVGPLKPENDQLIDISGDKM  434 (595)
T ss_dssp             ECSSCEEEEEETTTTSTTCCSSEEEEEESCCTTSSCCCCSSCCEEEEEEECSSSSC
T ss_pred             ecccccccceeccceEeCCCCCEEEEcCCCCccccccCCCCCCCcceEEEcCCCcE
Confidence            7765432     2234579999998754   23321          6778766554

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.41  E-value=8.7e-11  Score=102.92  Aligned_cols=221  Identities=10%  Similarity=0.086  Sum_probs=142.5

Q ss_pred             EEecceeecCCCccccCCCCceeEEEEECCCCceeeeecCCCCeeEEEECCCCCEEEEecCCCcEEEEEccCcceeeeec
Q 014475           40 ACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWH  119 (424)
Q Consensus        40 ~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~  119 (424)
                      ....  |+++++.|+..+..++.|..|+.. ++......+...+..++++++|+++++...++.|.+|+.. ++......
T Consensus        48 egp~--~~~~g~~l~~~d~~~~~i~~~~~~-g~~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~~~~~~~  123 (305)
T 3dr2_A           48 EGPA--WWEAQRTLVWSDLVGRRVLGWRED-GTVDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQAHLLVG  123 (305)
T ss_dssp             EEEE--EEGGGTEEEEEETTTTEEEEEETT-SCEEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEC
T ss_pred             cCCe--EeCCCCEEEEEECCCCEEEEEeCC-CCEEEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC-CCEEEEEe
Confidence            3445  999999554444444899999984 4444444566788999999999977776666789999975 54322211


Q ss_pred             ---c-ccCCeEEEEEccCCcEEEE----eeC-------------CCcEEEEeCCcccchhcccccccceEEeecCCcCce
Q 014475          120 ---A-HYRAVTCLVFSEDGSFLIS----GSE-------------DGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRI  178 (424)
Q Consensus       120 ---~-~~~~i~~~~~~~~~~~l~s----~~~-------------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i  178 (424)
                         + ....++.+.+.|+|+++++    |..             .+.|..+|..++.         ...+   . .....
T Consensus       124 ~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~---------~~~~---~-~~~~p  190 (305)
T 3dr2_A          124 RYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSP---------LQRM---A-DLDHP  190 (305)
T ss_dssp             EETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCC---------CEEE---E-EESSE
T ss_pred             ccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCc---------EEEE---e-cCCCC
Confidence               1 1235678999999998886    332             2457777764421         1111   1 23355


Q ss_pred             eEEEEEEcCceeEEEEEeCC------CcEEEEecCCCcee--eeee--cCcceeEEEECCCCCEEEEEeCCCcEEEEEcC
Q 014475          179 TDIVIGYGGVSATIVSASED------RTCKVWSLLKGRLL--RNIV--FPSVIDAIALDPAEHVFYAGSRDGSIYIAALN  248 (424)
Q Consensus       179 ~~~~~~~~~~~~~l~~~~~d------~~v~iwd~~~~~~~--~~~~--~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~  248 (424)
                      ..++|++++  +.|+.+...      +.|..||+..+...  ..+.  .......++++++|+ +++++.+ .|.+|+..
T Consensus       191 ~gl~~spdg--~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~-lwv~~~~-gv~~~~~~  266 (305)
T 3dr2_A          191 NGLAFSPDE--QTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGW-LWSSSGT-GVCVFDSD  266 (305)
T ss_dssp             EEEEECTTS--SEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSC-EEECCSS-EEEEECTT
T ss_pred             cceEEcCCC--CEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCC-EEEecCC-cEEEECCC
Confidence            788999998  666666554      78999998765411  1111  234456789999999 4555544 49999885


Q ss_pred             CCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcE
Q 014475          249 AESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMV  292 (424)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i  292 (424)
                      .          +.+..+..+. .+.+++|++ ++.|..++.++..
T Consensus       267 g----------~~~~~~~~~~-~~~~~~f~~d~~~L~it~~~~l~  300 (305)
T 3dr2_A          267 G----------QLLGHIPTPG-TASNCTFDQAQQRLFITGGPCLW  300 (305)
T ss_dssp             S----------CEEEEEECSS-CCCEEEECTTSCEEEEEETTEEE
T ss_pred             C----------CEEEEEECCC-ceeEEEEeCCCCEEEEEcCCeEE
Confidence            4          3344444333 588899988 7777766665433

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.39  E-value=2.3e-10  Score=101.15  Aligned_cols=215  Identities=13%  Similarity=0.074  Sum_probs=139.7

Q ss_pred             eecCCCccccCCCCceeEEEEECCCCceeeeecCCCCeeEEEECCCCCEEEEecCCCcEEEEEccCcceeeeecc----c
Q 014475           46 FLASSQLREQPSASSGSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHA----H  121 (424)
Q Consensus        46 ~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~----~  121 (424)
                      |+|+++.++.+...++.|..||.++++.... .....+.+++++|+|+++++. .+ .|.+||..+++.......    .
T Consensus        56 ~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~~-~~~~~v~~i~~~~dg~l~v~~-~~-gl~~~d~~~g~~~~~~~~~~~~~  132 (326)
T 2ghs_A           56 FDPASGTAWWFNILERELHELHLASGRKTVH-ALPFMGSALAKISDSKQLIAS-DD-GLFLRDTATGVLTLHAELESDLP  132 (326)
T ss_dssp             EETTTTEEEEEEGGGTEEEEEETTTTEEEEE-ECSSCEEEEEEEETTEEEEEE-TT-EEEEEETTTCCEEEEECSSTTCT
T ss_pred             EeCCCCEEEEEECCCCEEEEEECCCCcEEEE-ECCCcceEEEEeCCCeEEEEE-CC-CEEEEECCCCcEEEEeeCCCCCC
Confidence            8998665555544448999999987765432 235689999999999877764 44 499999988765432211    1


Q ss_pred             cCCeEEEEEccCCcEEEEeeC------CCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEE-EE
Q 014475          122 YRAVTCLVFSEDGSFLISGSE------DGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATI-VS  194 (424)
Q Consensus       122 ~~~i~~~~~~~~~~~l~s~~~------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l-~~  194 (424)
                      ...+..+.++|+|+++++...      .+.|..++  ++.            ...+..+......++|++++  +.+ ++
T Consensus       133 ~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~------------~~~~~~~~~~~~~i~~s~dg--~~lyv~  196 (326)
T 2ghs_A          133 GNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGK------------VTKLFADISIPNSICFSPDG--TTGYFV  196 (326)
T ss_dssp             TEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTE------------EEEEEEEESSEEEEEECTTS--CEEEEE
T ss_pred             CCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCc------------EEEeeCCCcccCCeEEcCCC--CEEEEE
Confidence            235889999999987765542      23455555  211            11111122345688999887  555 44


Q ss_pred             EeCCCcEEEEecC--CC-cee--eeee----cCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeee
Q 014475          195 ASEDRTCKVWSLL--KG-RLL--RNIV----FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSL  265 (424)
Q Consensus       195 ~~~d~~v~iwd~~--~~-~~~--~~~~----~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~  265 (424)
                      .+.++.|.+||+.  ++ +..  ..+.    ....+..++++++|.++++...++.|..||...          +.+..+
T Consensus       197 ~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~~g----------~~~~~i  266 (326)
T 2ghs_A          197 DTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTDG----------NHIARY  266 (326)
T ss_dssp             ETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECTTC----------CEEEEE
T ss_pred             ECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECCCC----------CEEEEE
Confidence            4567899999986  55 321  1121    234577899999998777776778899998743          334445


Q ss_pred             cccCcCeEEEEec-C-CCEE-EEeCCC
Q 014475          266 SDHSKAVTCLAYS-T-GDLL-ISGSED  289 (424)
Q Consensus       266 ~~~~~~i~~~~~~-~-~~~l-~t~~~d  289 (424)
                      ..+...+++++|+ + ++.| ++...+
T Consensus       267 ~~~~~~~~~~af~g~d~~~L~vt~~~~  293 (326)
T 2ghs_A          267 EVPGKQTTCPAFIGPDASRLLVTSARE  293 (326)
T ss_dssp             ECSCSBEEEEEEESTTSCEEEEEEBCT
T ss_pred             ECCCCCcEEEEEecCCCCEEEEEecCC
Confidence            5556679999998 6 5555 444443

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=99.38  E-value=2.2e-10  Score=111.19  Aligned_cols=243  Identities=9%  Similarity=0.070  Sum_probs=157.7

Q ss_pred             EEeecCCCCCceEEEeCCCCceEEEeeCC-CCCC-CceEEecceeecCCCccccCCC----CceeEEEEECCCCceeeee
Q 014475            4 LIASSSVADTGIGCWDLESGAEQLRYKSC-ASPP-HGLACVGQRFLASSQLREQPSA----SSGSILYWSWSKPQVEVKS   77 (424)
Q Consensus         4 ~lat~~~~dg~i~vwd~~~~~~~~~~~~~-~~~~-~~v~~~~~~~~~~~~~l~~~~~----~~g~i~vwd~~~~~~~~~~   77 (424)
                      .|+.++ .|+.|..+|.++|+.+-++... .... ..+....  ...++..++..+.    .+|.|+.+|..+++.....
T Consensus       130 ~v~v~~-~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p--~v~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~  206 (677)
T 1kb0_A          130 KVYVGA-WDGRLIALDAATGKEVWHQNTFEGQKGSLTITGAP--RVFKGKVIIGNGGAEYGVRGYITAYDAETGERKWRW  206 (677)
T ss_dssp             EEEEEC-TTSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCC--EEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEE
T ss_pred             EEEEEc-CCCEEEEEECCCCCEEeeecCCcCcCcCcccccCc--EEECCEEEEEecccccCCCCEEEEEECCCCcEEEEe
Confidence            456667 7899999999999999887754 2110 1122111  2234444433321    1399999999999887654


Q ss_pred             cCCCC---------------------------------eeEEEECCCCCEEEEecCCC-------------------cEE
Q 014475           78 LPAEP---------------------------------IKPIAANSHGTYIAGGGQSG-------------------DIY  105 (424)
Q Consensus        78 ~~~~~---------------------------------v~~~~~s~~~~~l~~~~~dg-------------------~v~  105 (424)
                      ....+                                 ...++++|++..++.+..++                   .|.
T Consensus       207 ~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~  286 (677)
T 1kb0_A          207 FSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIV  286 (677)
T ss_dssp             ESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEE
T ss_pred             ccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEE
Confidence            32111                                 13578889888888887664                   499


Q ss_pred             EEEccCcceeeeecc--cc-------CCeEEEEEccCC---cEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecC
Q 014475          106 MWEVASGRLLKKWHA--HY-------RAVTCLVFSEDG---SFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTG  173 (424)
Q Consensus       106 iwd~~~~~~~~~~~~--~~-------~~i~~~~~~~~~---~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  173 (424)
                      .+|.++|+.+..++.  |.       .....+....+|   ..++.++.+|.++++|.+++................+..
T Consensus       287 AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~  366 (677)
T 1kb0_A          287 ALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDK  366 (677)
T ss_dssp             EECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECT
T ss_pred             EEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCC
Confidence            999999998877653  21       222333444467   679999999999999998875433221111000000000


Q ss_pred             Cc------------------------CceeEEEEEEcCceeEEEEEeC--------------------------------
Q 014475          174 HT------------------------LRITDIVIGYGGVSATIVSASE--------------------------------  197 (424)
Q Consensus       174 ~~------------------------~~i~~~~~~~~~~~~~l~~~~~--------------------------------  197 (424)
                      ..                        ..-..++++|+.  .++++...                                
T Consensus       367 ~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~--~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~  444 (677)
T 1kb0_A          367 HGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQT--GLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAK  444 (677)
T ss_dssp             TSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTT--TEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCE
T ss_pred             CCceeeccccCcCCCccEECcCcccccCCCCceEcCCC--CEEEEeChhcceeeeccccccccccccccccccccccccc
Confidence            00                        001246677765  45555432                                


Q ss_pred             -----------CCcEEEEecCCCceeeeeecCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCC
Q 014475          198 -----------DRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAES  251 (424)
Q Consensus       198 -----------d~~v~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  251 (424)
                                 .|.|..||+.+++.+..+.+..+.....+...+..+++++.||.+++||.++++
T Consensus       445 ~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~  509 (677)
T 1kb0_A          445 FFNAEPPKSKPFGRLLAWDPVAQKAAWSVEHVSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGE  509 (677)
T ss_dssp             EECSSCCCSCCEEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCC
T ss_pred             ccccccCCCCCccEEEEEeCCCCcEEeecCCCCCCcCcceEeCCCEEEEECCCCcEEEEECCCCc
Confidence                       278999999999999888876666666666778889999999999999999984

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=99.37  E-value=1.3e-09  Score=98.40  Aligned_cols=268  Identities=9%  Similarity=0.038  Sum_probs=167.1

Q ss_pred             CCCccccCCCCceeEEEEECCCCceeeeecC----------CCCeeEEEECCCCCEEEEecCCCcEEEEEccCcceeeee
Q 014475           49 SSQLREQPSASSGSILYWSWSKPQVEVKSLP----------AEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKW  118 (424)
Q Consensus        49 ~~~~l~~~~~~~g~i~vwd~~~~~~~~~~~~----------~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~  118 (424)
                      .+..+.+++.+ +.|..+|..+++.......          ...+.+. ...++..+++++.++.|..+|.++|+.+...
T Consensus        52 ~~~~v~~~~~~-g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~v~~~~g~l~a~d~~tG~~~W~~  129 (376)
T 3q7m_A           52 ADNVVYAADRA-GLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGG-VTVSGGHVYIGSEKAQVYALNTSDGTVAWQT  129 (376)
T ss_dssp             ETTEEEEECTT-SEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEE-EEEETTEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred             ECCEEEEEcCC-CeEEEEEccCCceeeeecCccccccccccCcccccC-ceEeCCEEEEEcCCCEEEEEECCCCCEEEEE
Confidence            34555566655 8999999998887765443          2223222 1224556777888999999999999988766


Q ss_pred             ccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCC
Q 014475          119 HAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASED  198 (424)
Q Consensus       119 ~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d  198 (424)
                      .............  +..+++++.++.|..+|..++...........  ........    ..... +   ..++.++.+
T Consensus       130 ~~~~~~~~~p~~~--~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~--~~~~~~~~----~~~~~-~---~~v~~g~~~  197 (376)
T 3q7m_A          130 KVAGEALSRPVVS--DGLVLIHTSNGQLQALNEADGAVKWTVNLDMP--SLSLRGES----APTTA-F---GAAVVGGDN  197 (376)
T ss_dssp             ECSSCCCSCCEEE--TTEEEEECTTSEEEEEETTTCCEEEEEECCC-------CCCC----CCEEE-T---TEEEECCTT
T ss_pred             eCCCceEcCCEEE--CCEEEEEcCCCeEEEEECCCCcEEEEEeCCCC--ceeecCCC----CcEEE-C---CEEEEEcCC
Confidence            5433222222222  44677888899999999977543211111000  00000011    11121 2   467788889


Q ss_pred             CcEEEEecCCCceeeeeecCcce-----e---EEEECC--CCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeeccc
Q 014475          199 RTCKVWSLLKGRLLRNIVFPSVI-----D---AIALDP--AEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDH  268 (424)
Q Consensus       199 ~~v~iwd~~~~~~~~~~~~~~~i-----~---~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~  268 (424)
                      +.+..+|..+++.+.......+.     .   .+...|  .+..+++++.++.+..+|..+++.         +-...  
T Consensus       198 g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~---------~w~~~--  266 (376)
T 3q7m_A          198 GRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQI---------MWKRE--  266 (376)
T ss_dssp             TEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTCCE---------EEEEC--
T ss_pred             CEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCCcE---------Eeecc--
Confidence            99999999999988777633211     0   011222  356788888899999999988742         21111  


Q ss_pred             CcCeEEEEecCCCEEEEeCCCCcEEEEeCCCCcEEEEEecc-CCCeeEEEEEecCceeeeccCCCceeeccCCCCCC
Q 014475          269 SKAVTCLAYSTGDLLISGSEDGMVRVWDPITHNIVRMFRLA-KGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGSQL  344 (424)
Q Consensus       269 ~~~i~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~-~~~v~~l~~s~~~~~l~~~~~d~~i~iw~~~~~~~  344 (424)
                      ......+... +..++.++.++.|..+|..+++.+...... ...+.....  .+..|..++.+|.+..+|..+++.
T Consensus       267 ~~~~~~~~~~-~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~--~~~~l~v~~~~g~l~~~d~~tG~~  340 (376)
T 3q7m_A          267 LGSVNDFIVD-GNRIYLVDQNDRVMALTIDGGVTLWTQSDLLHRLLTSPVL--YNGNLVVGDSEGYLHWINVEDGRF  340 (376)
T ss_dssp             CCCEEEEEEE-TTEEEEEETTCCEEEEETTTCCEEEEECTTTTSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCE
T ss_pred             CCCCCCceEE-CCEEEEEcCCCeEEEEECCCCcEEEeecccCCCcccCCEE--ECCEEEEEeCCCeEEEEECCCCcE
Confidence            1223333333 677788888999999999999988776622 223333333  345788888899999999887754

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=99.31  E-value=1.9e-14  Score=129.66  Aligned_cols=256  Identities=11%  Similarity=0.088  Sum_probs=140.9

Q ss_pred             CCCccccCCCCceeEEEEECCCCceeeeecCCCCeeEEEECCCCCEEEEecCCCcEEEEEccCcceeeeeccccC-CeE-
Q 014475           49 SSQLREQPSASSGSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYR-AVT-  126 (424)
Q Consensus        49 ~~~~l~~~~~~~g~i~vwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~-~i~-  126 (424)
                      ++..+++++.+ |.|+.||..+++..+.... +++.+..+..++..+++++.||.|+.||.++|+.+..+..+.. .+. 
T Consensus         8 ~~~~v~~gs~d-g~v~a~d~~tG~~~W~~~~-~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~   85 (369)
T 2hz6_A            8 PETLLFVSTLD-GSLHAVSKRTGSIKWTLKE-DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQA   85 (369)
T ss_dssp             CTTEEEEEETT-SEEEEEETTTCCEEEEEEC-CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTT
T ss_pred             eCCEEEEEcCC-CEEEEEECCCCCEEEEecC-CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCcccccc
Confidence            56677777776 9999999999998877655 6666666667888888888999999999999987766543311 010 


Q ss_pred             EEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEec
Q 014475          127 CLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSL  206 (424)
Q Consensus       127 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~  206 (424)
                      ...+. .+..+++++.++.++.||.+++...           ..+..+.    ...++|.+  ..+++++.++.|+.||.
T Consensus        86 sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~-----------w~~~~~~----~~~~~p~~--~~v~~~~~dg~v~a~d~  147 (369)
T 2hz6_A           86 SPCRS-SDGILYMGKKQDIWYVIDLLTGEKQ-----------QTLSSAF----ADSLSPST--SLLYLGRTEYTITMYDT  147 (369)
T ss_dssp             CSCC------CCCCEEEEEEEEECCC---------------------------------------EEEEEEEEEEECCCS
T ss_pred             CceEe-cCCEEEEEeCCCEEEEEECCCCcEE-----------EEecCCC----cccccccC--CEEEEEecCCEEEEEEC
Confidence            00111 3456888889999999999875432           1222221    12344544  78889999999999999


Q ss_pred             CCCceeeeeecCcceeEEEECCCC---CEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEE-EEecCCCE
Q 014475          207 LKGRLLRNIVFPSVIDAIALDPAE---HVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTC-LAYSTGDL  282 (424)
Q Consensus       207 ~~~~~~~~~~~~~~i~~~~~~~~~---~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~~~  282 (424)
                      ++++.+..+.... ....++.++.   ..+++++.+|.++.||.++++         .+-... ...++.. ..++++..
T Consensus       148 ~tG~~~W~~~~~~-~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~---------~~W~~~-~~~pv~~~~~~~~dg~  216 (369)
T 2hz6_A          148 KTRELRWNATYFD-YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGD---------VLWIQN-YASPVVAFYVWQREGL  216 (369)
T ss_dssp             SSSSCCCEEEEEE-ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCC---------EEEEEE-CSSCEEEEEECTTSSC
T ss_pred             CCCCEEEeEeccc-ccCccccCCccccceEEEECCCCEEEEEECCCCc---------EEEEec-CCCceEEEEEecCCce
Confidence            9999877765321 2223333332   567788999999999998874         222222 2334433 23333222


Q ss_pred             E-----EEeCCCCcEEEEeCCCCc----EEEEEeccCCCeeEEEEEecCceeeeccCCCceeeccCC
Q 014475          283 L-----ISGSEDGMVRVWDPITHN----IVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRH  340 (424)
Q Consensus       283 l-----~t~~~dg~i~iwd~~~~~----~~~~~~~~~~~v~~l~~s~~~~~l~~~~~d~~i~iw~~~  340 (424)
                      +     +.+  ++.++.+|..+|+    .+..+... +.+.  ...-.+..|..++.||.++..+..
T Consensus       217 ~~v~~~~~~--~~~l~~ld~~tG~~~~~~~W~~~~~-~~~~--sp~~~~g~lyv~~~~G~l~al~~~  278 (369)
T 2hz6_A          217 RKVMHINVA--VETLRYLTFMSGEVGRITKWKYPFP-KETE--AKSKLTPTLYVGKYSTSLYASPSM  278 (369)
T ss_dssp             EEECCEEEE--HHHHHHHHHHHHHHHHHHTSCCCCC-CHHH--HHHHSEEEECBEECSSCEECCEEE
T ss_pred             Eeccceeec--ccceeeeehhcCCcccceeeeeccC-cccc--ccccccceEEEecccCCEEecCcc
Confidence            1     112  3445666666665    44333211 1111  000123467778888988888776

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=99.31  E-value=7.6e-10  Score=107.65  Aligned_cols=243  Identities=9%  Similarity=0.115  Sum_probs=155.1

Q ss_pred             EEeecCCCCCceEEEeCCCCceEEEeeCC-C-CCCCceEEecceeecCCCccccCCC----CceeEEEEECCCCceeeee
Q 014475            4 LIASSSVADTGIGCWDLESGAEQLRYKSC-A-SPPHGLACVGQRFLASSQLREQPSA----SSGSILYWSWSKPQVEVKS   77 (424)
Q Consensus         4 ~lat~~~~dg~i~vwd~~~~~~~~~~~~~-~-~~~~~v~~~~~~~~~~~~~l~~~~~----~~g~i~vwd~~~~~~~~~~   77 (424)
                      .|+.++ .|+.|..+|.++|+.+-++... . .....+.+..  ...++..++..+.    .+|.|..||..+++.....
T Consensus       123 ~v~v~~-~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP--~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~  199 (689)
T 1yiq_A          123 KVYVGV-LDGRLEAIDAKTGQRAWSVDTRADHKRSYTITGAP--RVVNGKVVIGNGGAEFGVRGYVTAYDAETGKEAWRF  199 (689)
T ss_dssp             EEEEEC-TTSEEEEEETTTCCEEEEEECCSCTTSCCBCCSCC--EEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEE
T ss_pred             EEEEEc-cCCEEEEEECCCCCEeeeecCcCCCCCCccccCCc--EEECCEEEEEeCCCccCCCCEEEEEECCCCcEEEEe
Confidence            466777 7999999999999999777653 1 1111122111  2224554443322    1389999999999887654


Q ss_pred             cC--CC------------------------------CeeEEEECCCCCEEEEecCCCc-------------------EEE
Q 014475           78 LP--AE------------------------------PIKPIAANSHGTYIAGGGQSGD-------------------IYM  106 (424)
Q Consensus        78 ~~--~~------------------------------~v~~~~~s~~~~~l~~~~~dg~-------------------v~i  106 (424)
                      ..  ..                              ....++++|++..++.+..++.                   |..
T Consensus       200 ~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~A  279 (689)
T 1yiq_A          200 YTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVA  279 (689)
T ss_dssp             ESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEE
T ss_pred             cccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEE
Confidence            31  00                              1125788898888998887763                   999


Q ss_pred             EEccCcceeeeecc--cc-------CCeEEEEEccCCc---EEEEeeCCCcEEEEeCCcccchhcccccccceEEe----
Q 014475          107 WEVASGRLLKKWHA--HY-------RAVTCLVFSEDGS---FLISGSEDGCVRIWSLLTVFEECESQRASHLYLHS----  170 (424)
Q Consensus       107 wd~~~~~~~~~~~~--~~-------~~i~~~~~~~~~~---~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~----  170 (424)
                      +|.++|+.+..++.  |.       .++.......+|+   .++.++.+|.++++|.+++................    
T Consensus       280 lD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~  359 (689)
T 1yiq_A          280 VNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMK  359 (689)
T ss_dssp             EETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETT
T ss_pred             EEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCcc
Confidence            99999999887754  21       1222222223565   78899999999999998876532211110000000    


Q ss_pred             ----------------------ecCC--cCceeEEEEEEcCceeEEEEEeC-----------------------------
Q 014475          171 ----------------------FTGH--TLRITDIVIGYGGVSATIVSASE-----------------------------  197 (424)
Q Consensus       171 ----------------------~~~~--~~~i~~~~~~~~~~~~~l~~~~~-----------------------------  197 (424)
                                            ..+.  ...-..++++|+.  .++++...                             
T Consensus       360 ~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~--~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  437 (689)
T 1yiq_A          360 TGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDT--GLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTG  437 (689)
T ss_dssp             TTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTT--TEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEEC
T ss_pred             CCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCC--CEEEEeccccceeeeeccccccccccccccccCcccc
Confidence                                  0000  0011235666665  44444321                             


Q ss_pred             ----------------CCcEEEEecCCCceeeeeecCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCC
Q 014475          198 ----------------DRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAES  251 (424)
Q Consensus       198 ----------------d~~v~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  251 (424)
                                      +|.|..||+.+++.+..+....+...-.+...+.++++++.||.++.||.++++
T Consensus       438 ~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~  507 (689)
T 1yiq_A          438 MMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYVTIFNGGTLSTAGNLVFEGSADGRVIAYAADTGE  507 (689)
T ss_dssp             CCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCC
T ss_pred             ccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCCCCccCccceECCCEEEEECCCCcEEEEECCCCc
Confidence                            378999999999999888866555544566678899999999999999999984

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=99.30  E-value=1.1e-08  Score=99.30  Aligned_cols=300  Identities=14%  Similarity=0.143  Sum_probs=179.0

Q ss_pred             EeecCCCCCceEEEeCCCCceEEEeeCCCCCCCc------eEEecceeecCCCccccCCCCceeEEEEECCCCceeeeec
Q 014475            5 IASSSVADTGIGCWDLESGAEQLRYKSCASPPHG------LACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSL   78 (424)
Q Consensus         5 lat~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~------v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~~~   78 (424)
                      |+.++ .++.|.-+|.++|+.+-++.........      ...-.  ....+..+++++.+ +.|..+|..+++......
T Consensus        69 vyv~~-~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~v~v~~~d-g~l~alD~~tG~~~W~~~  144 (668)
T 1kv9_A           69 IYTSM-SWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRG--VALWGDKVYVGTLD-GRLIALDAKTGKAIWSQQ  144 (668)
T ss_dssp             EEEEE-GGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCC--CEEEBTEEEEECTT-SEEEEEETTTCCEEEEEE
T ss_pred             EEEEC-CCCeEEEEECCCChhceEECCCCCccccccccccCCccc--eEEECCEEEEEcCC-CEEEEEECCCCCEeeeec
Confidence            45555 6789999999999999877543221100      00000  11234556666666 999999999998876654


Q ss_pred             CCC--CeeEEEECC--CCCEEEEecC------CCcEEEEEccCcceeeeeccc--c------------------------
Q 014475           79 PAE--PIKPIAANS--HGTYIAGGGQ------SGDIYMWEVASGRLLKKWHAH--Y------------------------  122 (424)
Q Consensus        79 ~~~--~v~~~~~s~--~~~~l~~~~~------dg~v~iwd~~~~~~~~~~~~~--~------------------------  122 (424)
                      ...  ....+..+|  .+..++++..      +|.|..+|.++|+.+..+...  .                        
T Consensus       145 ~~~~~~~~~~~~~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~  224 (668)
T 1kv9_A          145 TTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWK  224 (668)
T ss_dssp             CSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHH
T ss_pred             cCCCCCcceecCCCEEECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCccceee
Confidence            321  011111122  1334555543      589999999999988766421  0                        


Q ss_pred             -----CCeEEEEEccCCcEEEEeeCCCc-------------------EEEEeCCcccchhcccccccceEEeecCCc---
Q 014475          123 -----RAVTCLVFSEDGSFLISGSEDGC-------------------VRIWSLLTVFEECESQRASHLYLHSFTGHT---  175 (424)
Q Consensus       123 -----~~i~~~~~~~~~~~l~s~~~dg~-------------------i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~---  175 (424)
                           .....+++.|+...++.++.++.                   |..+|.+++...         .......|.   
T Consensus       225 ~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~---------W~~~~~~~~~wd  295 (668)
T 1kv9_A          225 LGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLA---------WHYQVTPGDSWD  295 (668)
T ss_dssp             HCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEE---------EEEESSTTCCSC
T ss_pred             eCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCcee---------eEeecCCCcccc
Confidence                 01124678887788888877663                   888998774321         222222222   


Q ss_pred             ----CceeEEEEEEcCc-eeEEEEEeCCCcEEEEecCCCceeeeeecCc-------------ce----------------
Q 014475          176 ----LRITDIVIGYGGV-SATIVSASEDRTCKVWSLLKGRLLRNIVFPS-------------VI----------------  221 (424)
Q Consensus       176 ----~~i~~~~~~~~~~-~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~-------------~i----------------  221 (424)
                          .+.....+..++. ...++.++.+|.+.++|..+|+.+.......             ++                
T Consensus       296 ~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p  375 (668)
T 1kv9_A          296 FTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWP  375 (668)
T ss_dssp             CCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESS
T ss_pred             ccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCccccccccccCCeeEECC
Confidence                2222223333542 1368899999999999999999885443111             00                


Q ss_pred             --------eEEEECCCCCEEEEEe------------------------------------CCCcEEEEEcCCCCCCCCCc
Q 014475          222 --------DAIALDPAEHVFYAGS------------------------------------RDGSIYIAALNAESPSTSSY  257 (424)
Q Consensus       222 --------~~~~~~~~~~~l~~~~------------------------------------~dg~i~i~d~~~~~~~~~~~  257 (424)
                              ..++++|+...+++..                                    .+|.|..||..+++      
T Consensus       376 ~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~------  449 (668)
T 1kv9_A          376 SPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQK------  449 (668)
T ss_dssp             CTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTE------
T ss_pred             CCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCc------
Confidence                    1256777766666532                                    23678888888763      


Q ss_pred             CceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCCCcEEEEEeccCCCe-eEEEEEecCc-eeee
Q 014475          258 GMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPV-NNILVVRRPL-YLNL  327 (424)
Q Consensus       258 ~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~v-~~l~~s~~~~-~l~~  327 (424)
                         .+-....+ .+.....+.. +.+++.++.||.|+.||.++++.+..++...+.. .-+.+..+|+ +++.
T Consensus       450 ---~~W~~~~~-~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~~~~~~~~~~~~p~~~~~~G~~yva~  518 (668)
T 1kv9_A          450 ---AAWKVPYP-THWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAGRQYVAI  518 (668)
T ss_dssp             ---EEEEEEES-SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEE
T ss_pred             ---EEEEccCC-CCCcCceeEeCCCEEEEECCcccchhhhhhcChhheEecCCCCcccCceEEEECCEEEEEE
Confidence               22222211 2222222333 7889999999999999999999999988654321 2344456665 4444

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=99.30  E-value=1.1e-08  Score=91.65  Aligned_cols=219  Identities=15%  Similarity=0.184  Sum_probs=145.9

Q ss_pred             CCCCEEEE-ecCCCcEEEEEccCc----ceeeeec-------cccCCeEEEEEccCCcEEEEeeCC------CcEEEEeC
Q 014475           90 SHGTYIAG-GGQSGDIYMWEVASG----RLLKKWH-------AHYRAVTCLVFSEDGSFLISGSED------GCVRIWSL  151 (424)
Q Consensus        90 ~~~~~l~~-~~~dg~v~iwd~~~~----~~~~~~~-------~~~~~i~~~~~~~~~~~l~s~~~d------g~i~iwd~  151 (424)
                      +++++|++ +..++.|+++|+.+.    +..+++.       ........+...|++ .++++..+      |.|.++|.
T Consensus        93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~  171 (462)
T 2ece_A           93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDH  171 (462)
T ss_dssp             CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECT
T ss_pred             ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEEC
Confidence            77777765 556788999999755    5555552       112245667888999 77766655      78999998


Q ss_pred             CcccchhcccccccceEEeecCC--c-CceeEEEEEEcCceeEEEEEe-------------------CCCcEEEEecCCC
Q 014475          152 LTVFEECESQRASHLYLHSFTGH--T-LRITDIVIGYGGVSATIVSAS-------------------EDRTCKVWSLLKG  209 (424)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~--~-~~i~~~~~~~~~~~~~l~~~~-------------------~d~~v~iwd~~~~  209 (424)
                      ++.           ..+..+...  . .--..+.|+|++  +.++++.                   .+.+|.+||+.++
T Consensus       172 ~T~-----------~v~~~~~~~~~~~~~~Yd~~~~p~~--~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~  238 (462)
T 2ece_A          172 YSF-----------EPLGKWEIDRGDQYLAYDFWWNLPN--EVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKR  238 (462)
T ss_dssp             TTC-----------CEEEECCSBCTTCCCCCCEEEETTT--TEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTT
T ss_pred             CCC-----------eEEEEEccCCCCccccceEEECCCC--CEEEEccCcCccccccccchhhhhhccCCEEEEEECCCC
Confidence            653           233333311  1 223357788888  7777774                   3689999999999


Q ss_pred             ceeeeeecC---cceeEEEE--CCCCCEEEEEe------CCCcEEEEEcCCCCCCCCCcCceeeee--ecc---------
Q 014475          210 RLLRNIVFP---SVIDAIAL--DPAEHVFYAGS------RDGSIYIAALNAESPSTSSYGMHIIGS--LSD---------  267 (424)
Q Consensus       210 ~~~~~~~~~---~~i~~~~~--~~~~~~l~~~~------~dg~i~i~d~~~~~~~~~~~~~~~~~~--~~~---------  267 (424)
                      +.+..+...   .....+.|  +|+++++++++      .+++|.+|..+.+.       +...+.  +..         
T Consensus       239 k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~-------~~~~~vIdi~~~~v~~~lp~  311 (462)
T 2ece_A          239 KRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGK-------WNAEKVIEIPAEPLEGNLPE  311 (462)
T ss_dssp             EEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTE-------EEEEEEEEECCEECCSSCCG
T ss_pred             cEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCc-------eeEEEEEeCCCccccccccc
Confidence            888888754   34455555  99999988877      45688877765421       111111  000         


Q ss_pred             -------cCcCeEEEEecC-CCEEEEeC-CCCcEEEEeCCC---CcEEEEEeccC--------------CCeeEEEEEec
Q 014475          268 -------HSKAVTCLAYST-GDLLISGS-EDGMVRVWDPIT---HNIVRMFRLAK--------------GPVNNILVVRR  321 (424)
Q Consensus       268 -------~~~~i~~~~~~~-~~~l~t~~-~dg~i~iwd~~~---~~~~~~~~~~~--------------~~v~~l~~s~~  321 (424)
                             -......+.+++ +++|.++. ..+.|.+||+..   .+.+..+....              +.-..+.++||
T Consensus       312 ~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpD  391 (462)
T 2ece_A          312 ILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRD  391 (462)
T ss_dssp             GGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTT
T ss_pred             cccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCC
Confidence                   024578899999 88777665 478999999863   35565554321              12478999999


Q ss_pred             Cceeeecc
Q 014475          322 PLYLNLGS  329 (424)
Q Consensus       322 ~~~l~~~~  329 (424)
                      |++|.++.
T Consensus       392 Gk~LyVaN  399 (462)
T 2ece_A          392 GRRVYVTN  399 (462)
T ss_dssp             SSEEEEEC
T ss_pred             CCEEEEEc
Confidence            99998876

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=99.29  E-value=9.1e-13  Score=118.62  Aligned_cols=202  Identities=11%  Similarity=0.080  Sum_probs=113.4

Q ss_pred             CCCEEEEecCCCcEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEe
Q 014475           91 HGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHS  170 (424)
Q Consensus        91 ~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  170 (424)
                      ++..+++++.||.|+.||..+|+.+..+..  +.+.+..+..++..+++++.||.|+.||.+++....           .
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w-----------~   74 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLT-----------K   74 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSE-----------E
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceee-----------e
Confidence            577899999999999999999999888775  455555566677788888899999999997643211           1


Q ss_pred             ecCCcC-cee-EEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeeecCcceeEEEECCCCCEEEEEeCCCcEEEEEcC
Q 014475          171 FTGHTL-RIT-DIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALN  248 (424)
Q Consensus       171 ~~~~~~-~i~-~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~  248 (424)
                      +..+.. .+. ...+. .+  ..+++++.++.++.||.++|+.+..+.....   ..++|++..+++++.++.|+.||.+
T Consensus        75 ~~~~~~~~~~~sp~~~-~~--~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~~---~~~~p~~~~v~~~~~dg~v~a~d~~  148 (369)
T 2hz6_A           75 LPFTIPELVQASPCRS-SD--GILYMGKKQDIWYVIDLLTGEKQQTLSSAFA---DSLSPSTSLLYLGRTEYTITMYDTK  148 (369)
T ss_dssp             CSCCHHHHHTTCSCC--------CCCCEEEEEEEEECCC-------------------------EEEEEEEEEEECCCSS
T ss_pred             eeccCccccccCceEe-cC--CEEEEEeCCCEEEEEECCCCcEEEEecCCCc---ccccccCCEEEEEecCCEEEEEECC
Confidence            111110 000 00111 22  5678888899999999999998877764432   3456788899999999999999998


Q ss_pred             CCCCCCCCcCceeeeeecccCcCeEEEEecC----CCEEEEeCCCCcEEEEeCCCCcEEEEEeccCCCeeE-EEEEecCc
Q 014475          249 AESPSTSSYGMHIIGSLSDHSKAVTCLAYST----GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNN-ILVVRRPL  323 (424)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~----~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~-l~~s~~~~  323 (424)
                      +++...         .+..+.  .....+.+    +..+++++.||.|+.||.++|+.+.++.. ..++.. ..+++++.
T Consensus       149 tG~~~W---------~~~~~~--~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~-~~pv~~~~~~~~dg~  216 (369)
T 2hz6_A          149 TRELRW---------NATYFD--YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQNY-ASPVVAFYVWQREGL  216 (369)
T ss_dssp             SSSCCC---------EEEEEE--ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEEC-SSCEEEEEECTTSSC
T ss_pred             CCCEEE---------eEeccc--ccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEecC-CCceEEEEEecCCce
Confidence            875321         111110  11122222    26677888999999999999999888773 445543 33445553

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=99.28  E-value=1.7e-08  Score=86.47  Aligned_cols=240  Identities=10%  Similarity=-0.011  Sum_probs=149.9

Q ss_pred             eeEEEEECCCCcee------eeecCCCCeeEEEECCCCCEEE-EecCCCcEEEEEccCcceeeeeccccCCeEEEEEccC
Q 014475           61 GSILYWSWSKPQVE------VKSLPAEPIKPIAANSHGTYIA-GGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSED  133 (424)
Q Consensus        61 g~i~vwd~~~~~~~------~~~~~~~~v~~~~~s~~~~~l~-~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~  133 (424)
                      +.|+.++++.....      ........+..++|++++..|. +-..++.|..+++..+.....+.........++++++
T Consensus        10 ~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~   89 (267)
T 1npe_A           10 GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHL   89 (267)
T ss_dssp             EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETT
T ss_pred             CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCccEEEEEec
Confidence            67888887765421      1111234678999999655554 5455788999998765543333333357899999986


Q ss_pred             Cc-EEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeC--CCcEEEEecCCCc
Q 014475          134 GS-FLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASE--DRTCKVWSLLKGR  210 (424)
Q Consensus       134 ~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~--d~~v~iwd~~~~~  210 (424)
                      +. .+++-...+.|.++++....         ...+  ..........+++++++. ..+++...  .+.|..+++... 
T Consensus        90 ~~~lyv~d~~~~~I~~~~~~g~~---------~~~~--~~~~~~~P~~i~vd~~~g-~lyv~~~~~~~~~I~~~~~dg~-  156 (267)
T 1npe_A           90 GRTIFWTDSQLDRIEVAKMDGTQ---------RRVL--FDTGLVNPRGIVTDPVRG-NLYWTDWNRDNPKIETSHMDGT-  156 (267)
T ss_dssp             TTEEEEEETTTTEEEEEETTSCS---------CEEE--ECSSCSSEEEEEEETTTT-EEEEEECCSSSCEEEEEETTSC-
T ss_pred             CCeEEEEECCCCEEEEEEcCCCC---------EEEE--EECCCCCccEEEEeeCCC-EEEEEECCCCCcEEEEEecCCC-
Confidence            54 44555556789999985311         1111  111224567899998651 34444333  468888887643 


Q ss_pred             eeeeee--cCcceeEEEECCCCCEEEEEe-CCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecCCCEEEEeC
Q 014475          211 LLRNIV--FPSVIDAIALDPAEHVFYAGS-RDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTGDLLISGS  287 (424)
Q Consensus       211 ~~~~~~--~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~t~~  287 (424)
                      ....+.  .......++++|++..|+.+. ..+.|..+|.....         ...... .......++...+.++++..
T Consensus       157 ~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~---------~~~~~~-~~~~P~gi~~d~~~lyva~~  226 (267)
T 1npe_A          157 NRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPG---------RRKVLE-GLQYPFAVTSYGKNLYYTDW  226 (267)
T ss_dssp             CCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEE---------EEEEEE-CCCSEEEEEEETTEEEEEET
T ss_pred             CcEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCc---------eEEEec-CCCCceEEEEeCCEEEEEEC
Confidence            233332  234578899999877666554 56789999987632         111122 12334566655455566666


Q ss_pred             CCCcEEEEeCCCCcEEEEEeccCC-CeeEEEEEecCc
Q 014475          288 EDGMVRVWDPITHNIVRMFRLAKG-PVNNILVVRRPL  323 (424)
Q Consensus       288 ~dg~i~iwd~~~~~~~~~~~~~~~-~v~~l~~s~~~~  323 (424)
                      ..+.|..+|..+++.+..+..... ....+++.|++.
T Consensus       227 ~~~~v~~~d~~~g~~~~~i~~g~~~~p~gi~~~~~~~  263 (267)
T 1npe_A          227 KTNSVIAMDLAISKEMDTFHPHKQTRLYGITIALSQC  263 (267)
T ss_dssp             TTTEEEEEETTTTEEEEEECCSSCCCCCCEEEECSCC
T ss_pred             CCCeEEEEeCCCCCceEEEccccccccceeeecCccC
Confidence            678999999999999998875432 467888888764

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=99.23  E-value=1.4e-08  Score=90.85  Aligned_cols=254  Identities=13%  Similarity=0.102  Sum_probs=159.7

Q ss_pred             ceEEEeCCC-----CceEEEeeCCC----CCCCce----EEecceee--cCCCccccCCCCceeEEEEECCCC--ceee-
Q 014475           14 GIGCWDLES-----GAEQLRYKSCA----SPPHGL----ACVGQRFL--ASSQLREQPSASSGSILYWSWSKP--QVEV-   75 (424)
Q Consensus        14 ~i~vwd~~~-----~~~~~~~~~~~----~~~~~v----~~~~~~~~--~~~~~l~~~~~~~g~i~vwd~~~~--~~~~-   75 (424)
                      .|.+-|+..     ++.+..+.-..    .|..+-    .|+...++  +++++|++.+..++.|.+.|+.+.  +... 
T Consensus        44 ~la~vDvdp~s~ty~~vi~~~~~p~~gde~HH~gwn~css~~~~~~~~~~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~  123 (462)
T 2ece_A           44 FIAVVDVNPKSETYSKIVHKVELPYINDELHHFGWNACSSALCPNGKPNIERRFLIVPGLRSSRIYIIDTKPNPREPKII  123 (462)
T ss_dssp             EEEEEECCTTSTTTTSEEEEEECSSSCCCBCCCEESCCGGGGSTTCCTTCCSCEEEEEBTTTCCEEEEECCSCTTSCEEE
T ss_pred             eEEEEECCCCCCCcceEEEEEECCCCCCcccccchhhhhhhcccccCCCccCCEEEEccCCCCeEEEEECCCCCCCceee
Confidence            478889887     77777664322    111111    11111146  888888888877799999998643  2111 


Q ss_pred             eec---------CCCCeeEEEECCCCCEEEEecCC------CcEEEEEccCcceeeeecccc---CCeEEEEEccCCcEE
Q 014475           76 KSL---------PAEPIKPIAANSHGTYIAGGGQS------GDIYMWEVASGRLLKKWHAHY---RAVTCLVFSEDGSFL  137 (424)
Q Consensus        76 ~~~---------~~~~v~~~~~s~~~~~l~~~~~d------g~v~iwd~~~~~~~~~~~~~~---~~i~~~~~~~~~~~l  137 (424)
                      +..         .......+..+|+| +++++..+      |.|.++|.++.+.+.++....   ..-..+-|+|+++.+
T Consensus       124 k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~m  202 (462)
T 2ece_A          124 KVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVL  202 (462)
T ss_dssp             EEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEE
T ss_pred             eeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEECCCCeEEEEEccCCCCccccceEEECCCCCEE
Confidence            111         11245667889999 66665544      789999999999998886332   223468889999988


Q ss_pred             EEee-------------------CCCcEEEEeCCcccchhcccccccceEEeecCC--cCceeEEEE--EEcCceeEEEE
Q 014475          138 ISGS-------------------EDGCVRIWSLLTVFEECESQRASHLYLHSFTGH--TLRITDIVI--GYGGVSATIVS  194 (424)
Q Consensus       138 ~s~~-------------------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~~~~~--~~~~~~~~l~~  194 (424)
                      ++..                   ...+|.+||+.+.           ..+.++...  ......+.|  +|++  +++++
T Consensus       203 vsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~-----------k~~~tI~vg~~g~~P~~i~f~~~Pdg--~~aYV  269 (462)
T 2ece_A          203 VSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKR-----------KRIHSLTLGEENRMALELRPLHDPTK--LMGFI  269 (462)
T ss_dssp             EECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTT-----------EEEEEEESCTTEEEEEEEEECSSTTC--CEEEE
T ss_pred             EEccCcCccccccccchhhhhhccCCEEEEEECCCC-----------cEeeEEecCCCCCccceeEeeECCCC--CEEEE
Confidence            8874                   3678999999652           223333321  223445555  7776  56555


Q ss_pred             Ee------CCCcEEEEecCCCce--eeee--ec-----------------CcceeEEEECCCCCEEEEEeC-CCcEEEEE
Q 014475          195 AS------EDRTCKVWSLLKGRL--LRNI--VF-----------------PSVIDAIALDPAEHVFYAGSR-DGSIYIAA  246 (424)
Q Consensus       195 ~~------~d~~v~iwd~~~~~~--~~~~--~~-----------------~~~i~~~~~~~~~~~l~~~~~-dg~i~i~d  246 (424)
                      ++      .+++|.+|..+.++.  .+.+  ..                 ......+.++|++++|+++.. .+.|.+||
T Consensus       270 ~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~Vavfd  349 (462)
T 2ece_A          270 NMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYD  349 (462)
T ss_dssp             EEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEE
T ss_pred             EEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEE
Confidence            55      566887766554321  1111  00                 245788999999999998875 57999999


Q ss_pred             cCCCCCCCCCcCceeeeeeccc--------------CcCeEEEEecC-CCEEEEeC
Q 014475          247 LNAESPSTSSYGMHIIGSLSDH--------------SKAVTCLAYST-GDLLISGS  287 (424)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~--------------~~~i~~~~~~~-~~~l~t~~  287 (424)
                      +.....      .+.+..+...              .+....++++| +++|+++.
T Consensus       350 V~d~~~------~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN  399 (462)
T 2ece_A          350 ISNPFK------PVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN  399 (462)
T ss_dssp             CSSTTS------CEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred             ecCCCC------cEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence            964321      1333333221              01357899999 88888877

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=99.22  E-value=1.8e-08  Score=95.70  Aligned_cols=298  Identities=14%  Similarity=0.094  Sum_probs=172.2

Q ss_pred             EeecCCC-CCceEEEeC-CCCceEEEeeCCCCCC-Cc-----eEEecceeecCCCccccCCCCceeEEEEECCCCceeee
Q 014475            5 IASSSVA-DTGIGCWDL-ESGAEQLRYKSCASPP-HG-----LACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVK   76 (424)
Q Consensus         5 lat~~~~-dg~i~vwd~-~~~~~~~~~~~~~~~~-~~-----v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~   76 (424)
                      |..++ . ++.|.-+|. ++|+.+-++....... ..     ...-.  ....+..+++++.+ +.|..+|..+++....
T Consensus        65 vyv~~-~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~v~v~~~d-g~l~alD~~tG~~~W~  140 (571)
T 2ad6_A           65 MYVHS-AFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRG--LAYGAGQIVKKQAN-GHLLALDAKTGKINWE  140 (571)
T ss_dssp             EEEEC-STTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCC--CEEETTEEEEECTT-SEEEEEETTTCCEEEE
T ss_pred             EEEEe-CCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccc--cEEECCEEEEEeCC-CEEEEEECCCCCEEEE
Confidence            44555 5 789999999 9999987765432110 00     00000  11234556666665 9999999999988766


Q ss_pred             ecCCCC--eeEEEECC--CCCEEEEecC------CCcEEEEEccCcceeeeeccccCC----------------------
Q 014475           77 SLPAEP--IKPIAANS--HGTYIAGGGQ------SGDIYMWEVASGRLLKKWHAHYRA----------------------  124 (424)
Q Consensus        77 ~~~~~~--v~~~~~s~--~~~~l~~~~~------dg~v~iwd~~~~~~~~~~~~~~~~----------------------  124 (424)
                      ......  -..+.-+|  .+..+++++.      +|.|..+|.++|+.+.++......                      
T Consensus       141 ~~~~~~~~~~~~~~~P~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~G~~~~g  220 (571)
T 2ad6_A          141 VEVCDPKVGSTLTQAPFVAKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQFGLG  220 (571)
T ss_dssp             EECCCGGGTCBCCSCCEEETTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCSSHH
T ss_pred             ecCCCCCccceeccCCEEECCEEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCcccccccccccccccc
Confidence            443220  00111122  1334555544      789999999999987765421110                      


Q ss_pred             ---------------e-EEEEEccCCcEEEEeeCC----------------CcEEEEeCCcccchhcccccccceEEeec
Q 014475          125 ---------------V-TCLVFSEDGSFLISGSED----------------GCVRIWSLLTVFEECESQRASHLYLHSFT  172 (424)
Q Consensus       125 ---------------i-~~~~~~~~~~~l~s~~~d----------------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~  172 (424)
                                     + ..+++.++...+..+..+                +.|..+|.+++..         .......
T Consensus       221 ~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~---------~W~~~~~  291 (571)
T 2ad6_A          221 TKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMA---------KWGYQKT  291 (571)
T ss_dssp             HHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCE---------EEEEESS
T ss_pred             cccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcE---------EEEecCC
Confidence                           0 135566655566655432                2588889877432         1122222


Q ss_pred             CC--------cCceeEEEEEEcCce-eEEEEEeCCCcEEEEecCCCceeeeeecCc--------------ce--------
Q 014475          173 GH--------TLRITDIVIGYGGVS-ATIVSASEDRTCKVWSLLKGRLLRNIVFPS--------------VI--------  221 (424)
Q Consensus       173 ~~--------~~~i~~~~~~~~~~~-~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~--------------~i--------  221 (424)
                      .|        ..++. +....++.. ..++.++.+|.+.++|..+++.+.......              ++        
T Consensus       292 ~~d~~d~~~~~~p~l-~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~  370 (571)
T 2ad6_A          292 PHDEWDFAGVNQMVL-TDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATR  370 (571)
T ss_dssp             TTCSSCCCCCCCCEE-EEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCC
T ss_pred             CCcccccccCCCCEE-EecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCccccccccccCCceecccccCCC
Confidence            22        12221 112234411 246778889999999999999887765322              11        


Q ss_pred             ------------------eEEEECCCCCEEEEEeC-------------------------------------CCcEEEEE
Q 014475          222 ------------------DAIALDPAEHVFYAGSR-------------------------------------DGSIYIAA  246 (424)
Q Consensus       222 ------------------~~~~~~~~~~~l~~~~~-------------------------------------dg~i~i~d  246 (424)
                                        ..++++|+..++++...                                     +|.|..||
T Consensus       371 ~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D  450 (571)
T 2ad6_A          371 MDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFD  450 (571)
T ss_dssp             TTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEEC
T ss_pred             CCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEE
Confidence                              23567787777777643                                     36777888


Q ss_pred             cCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCCCcEEEEEeccCCC-eeEEEEEecCce
Q 014475          247 LNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGP-VNNILVVRRPLY  324 (424)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~-v~~l~~s~~~~~  324 (424)
                      ..+++         .+-... +...+....+.. +..++.++.||.|+.||.++|+.+.+++..... -.-+.+..+|+.
T Consensus       451 ~~tG~---------~~W~~~-~~~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~~~~~G~~  520 (571)
T 2ad6_A          451 LTTGK---------AKWTKW-EKFAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKGKQ  520 (571)
T ss_dssp             TTTCC---------EEEEEE-ESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEE
T ss_pred             CCCCC---------EEEEec-CCCCccceeEEECCCEEEEEcCCCeEEEEECCCCCEEEEEeCCCCcEeeeEEEEECCEE
Confidence            77764         122221 112222222222 677888999999999999999999998854322 122345577764


Q ss_pred             ee
Q 014475          325 LN  326 (424)
Q Consensus       325 l~  326 (424)
                      ++
T Consensus       521 yv  522 (571)
T 2ad6_A          521 YI  522 (571)
T ss_dssp             EE
T ss_pred             EE
Confidence            44

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=99.21  E-value=4.5e-10  Score=99.47  Aligned_cols=253  Identities=14%  Similarity=0.055  Sum_probs=157.2

Q ss_pred             cCCCccccCCCCceeEEEEECCCCceeeeec-CCCCeeEEEECCCCCEEEEecCCCcEEEEEccCcceeeeeccccCCeE
Q 014475           48 ASSQLREQPSASSGSILYWSWSKPQVEVKSL-PAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVT  126 (424)
Q Consensus        48 ~~~~~l~~~~~~~g~i~vwd~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~  126 (424)
                      .++. +.+++.+ +.|..|| .+++...... ....+.++...+++. +.+++.+  |..+|. +++.+..+........
T Consensus        29 ~~g~-l~v~t~~-~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~--l~~~d~-~g~~~~~~~~~~~~~~  101 (330)
T 3hxj_A           29 KNGT-IYLGSSN-KNLYAIN-TDGSVKWFFKSGEIIECRPSIGKDGT-IYFGSDK--VYAINP-DGTEKWRFDTKKAIVS  101 (330)
T ss_dssp             TTSC-EECSSTT-TTTEEEC-TTSCEEESSCGGGEEEECCEETTTTE-ECCSSCE--EEEECC-CGGGGGGSCC-----C
T ss_pred             cCCe-EEEEcCC-CEEEEEC-CCCcEEEEEecCCCcccceEEecCCc-EEEecCc--EEEECC-CCcEEEEEECCCCccc
Confidence            4554 4455554 7899999 7766654432 233457777777776 4445544  888886 6666555443333233


Q ss_pred             EEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEec
Q 014475          127 CLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSL  206 (424)
Q Consensus       127 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~  206 (424)
                      ...+.  +..+..++.++.|..+|.. +.           .......+...+.++...+++   .+..++.++.+..+|.
T Consensus       102 ~~~~~--~~~l~v~t~~~~l~~~d~~-g~-----------~~~~~~~~~~~~~~~~~~~~g---~l~vgt~~~~l~~~d~  164 (330)
T 3hxj_A          102 DFTIF--EDILYVTSMDGHLYAINTD-GT-----------EKWRFKTKKAIYATPIVSEDG---TIYVGSNDNYLYAINP  164 (330)
T ss_dssp             CEEEE--TTEEEEECTTSEEEEECTT-SC-----------EEEEEECSSCCCSCCEECTTS---CEEEECTTSEEEEECT
T ss_pred             CceEE--CCEEEEEecCCEEEEEcCC-CC-----------EEEEEcCCCceeeeeEEcCCC---EEEEEcCCCEEEEECC
Confidence            33333  4457778888999999985 21           122222333345555554443   4677888899999999


Q ss_pred             CCCceeeeee-cCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecCCCEEEE
Q 014475          207 LKGRLLRNIV-FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTGDLLIS  285 (424)
Q Consensus       207 ~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~t  285 (424)
                      . ++....+. ....+.++...+++.++ +++  +.+..+| .++.         ...........+.++...++..|..
T Consensus       165 ~-g~~~~~~~~~~~~~~~~~~d~~g~l~-v~t--~~l~~~d-~~g~---------~~~~~~~~~~~~~~~~~~~~g~l~v  230 (330)
T 3hxj_A          165 D-GTEKWRFKTNDAITSAASIGKDGTIY-FGS--DKVYAIN-PDGT---------EKWNFYAGYWTVTRPAISEDGTIYV  230 (330)
T ss_dssp             T-SCEEEEEECSSCCCSCCEECTTCCEE-EES--SSEEEEC-TTSC---------EEEEECCSSCCCSCCEECTTSCEEE
T ss_pred             C-CCEeEEEecCCCceeeeEEcCCCEEE-EEe--CEEEEEC-CCCc---------EEEEEccCCcceeceEECCCCeEEE
Confidence            8 77766665 34456677777777744 444  7899999 4442         2233333445677777777445666


Q ss_pred             eCCCCcEEEEeCCCCcEEEEEeccCCCeeEEEEEecCceeeeccCCCceeeccCC
Q 014475          286 GSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRH  340 (424)
Q Consensus       286 ~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~d~~i~iw~~~  340 (424)
                      ++.++.|..+| .+++.+..+......+..+...+++ .|..++.+|.+..++..
T Consensus       231 ~t~~~gl~~~~-~~g~~~~~~~~~~~~~~~~~~~~~g-~l~v~t~~ggl~~~d~~  283 (330)
T 3hxj_A          231 TSLDGHLYAIN-PDGTEKWRFKTGKRIESSPVIGNTD-TIYFGSYDGHLYAINPD  283 (330)
T ss_dssp             EETTTEEEEEC-TTSCEEEEEECSSCCCSCCEECTTS-CEEEECTTCEEEEECTT
T ss_pred             EcCCCeEEEEC-CCCCEeEEeeCCCCccccceEcCCC-eEEEecCCCCEEEECCC
Confidence            66778888888 4677777776555555566665555 56667778888888863

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.20  E-value=2.6e-09  Score=95.15  Aligned_cols=247  Identities=9%  Similarity=0.050  Sum_probs=148.9

Q ss_pred             ceEEecceeecCCCccccCCC-CceeEEEEECCCCceeee-------ecCCCCeeEEEECCCCCEEEEecC-----CCcE
Q 014475           38 GLACVGQRFLASSQLREQPSA-SSGSILYWSWSKPQVEVK-------SLPAEPIKPIAANSHGTYIAGGGQ-----SGDI  104 (424)
Q Consensus        38 ~v~~~~~~~~~~~~~l~~~~~-~~g~i~vwd~~~~~~~~~-------~~~~~~v~~~~~s~~~~~l~~~~~-----dg~v  104 (424)
                      ....++  ++++|+.+++... +++.++||.+++++....       ..+...+..++++++++++++-..     ++.|
T Consensus        18 ~p~~va--~~~~g~~~v~~~~~~~~~~~l~~~~~g~~~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i   95 (343)
T 2qe8_A           18 APGNIT--LTPDGRLFLSLHQFYQPEMQVAELTQDGLIPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKL   95 (343)
T ss_dssp             CEEEEE--ECTTSCEEEEECGGGCCSCSEEEEETTEEEESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEE
T ss_pred             CcceEE--ECCCCCEEEEeCCCCCCceEEEEECCCCeecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeE
Confidence            455666  9999998887532 214355665544432210       113457999999999987776543     5789


Q ss_pred             EEEEccCcceeeeecc------ccCCeEEEEEccCC-cEEEEee---CCCcEEEEeCCcccchhcccc---ccc-ceEEe
Q 014475          105 YMWEVASGRLLKKWHA------HYRAVTCLVFSEDG-SFLISGS---EDGCVRIWSLLTVFEECESQR---ASH-LYLHS  170 (424)
Q Consensus       105 ~iwd~~~~~~~~~~~~------~~~~i~~~~~~~~~-~~l~s~~---~dg~i~iwd~~~~~~~~~~~~---~~~-~~~~~  170 (424)
                      .+||+.+++.+..+..      +...+..+++++++ ..+++-.   .++.|.+||+.++........   ... .....
T Consensus        96 ~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~  175 (343)
T 2qe8_A           96 VAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDLV  175 (343)
T ss_dssp             EEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCCE
T ss_pred             EEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCccccccccee
Confidence            9999999887666542      22456899999854 4445554   578999999976432111100   000 00000


Q ss_pred             ecC--------------CcCceeEEEEEEcCceeEEEEEeCCC-cEEEEecC---CCc-----e---eeeeecCcceeEE
Q 014475          171 FTG--------------HTLRITDIVIGYGGVSATIVSASEDR-TCKVWSLL---KGR-----L---LRNIVFPSVIDAI  224 (424)
Q Consensus       171 ~~~--------------~~~~i~~~~~~~~~~~~~l~~~~~d~-~v~iwd~~---~~~-----~---~~~~~~~~~i~~~  224 (424)
                      ..+              ....+..+++++++  +.|+.+..++ .+..++..   .+.     .   +...........+
T Consensus       176 ~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg--~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgi  253 (343)
T 2qe8_A          176 IDGVPVQIGQPDGTVIRPHLGVNGIVLDAEN--EWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGI  253 (343)
T ss_dssp             ETTEECBEECTTSCEECCCCCEEEEEECTTS--CEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCE
T ss_pred             ECCEEEEeccCCCceeceecccceeEeccCC--CEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceE
Confidence            000              11246789999988  6777776665 44444432   111     0   1111233456789


Q ss_pred             EECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEe
Q 014475          225 ALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWD  296 (424)
Q Consensus       225 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd  296 (424)
                      +++++|.++++...++.|.+||..++.       ...+... .+...+.++++.+ +.++++.+..+.+.+|.
T Consensus       254 a~d~~G~l~va~~~~~~V~~~d~~~G~-------~~~~~~~-~~~~~p~~va~~~~g~l~v~~~~~~~~~~f~  318 (343)
T 2qe8_A          254 SIDKDHNIYVGDLAHSAIGVITSADRA-------YKLLVTD-EKLSWTDSFNFGSDGYLYFDCNQLHHSAPLN  318 (343)
T ss_dssp             EECTTCCEEEEEGGGTEEEEEETTTTE-------EEEEEEC-GGGSCEEEEEECTTSCEEEEECCGGGSGGGB
T ss_pred             EECCCCCEEEEccCCCeEEEEECCCCC-------EEEEEEC-CceecCCeeEECCCCcEEEEeCccccccccc
Confidence            999999999888889999999984432       1112111 1345688999988 77888777655554443

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=99.17  E-value=3.2e-07  Score=91.30  Aligned_cols=301  Identities=10%  Similarity=0.135  Sum_probs=187.7

Q ss_pred             CCCceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCceeeeec--------CCCC
Q 014475           11 ADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSL--------PAEP   82 (424)
Q Consensus        11 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~~~--------~~~~   82 (424)
                      .++.|..||..+++......  ......|.++.  ..+++.+.+.+..  +.+..||..+.+......        ....
T Consensus       191 ~~~Gl~~~~~~~~~~~~~~~--~~~~~~i~~i~--~d~~g~lwigt~~--~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~  264 (795)
T 4a2l_A          191 STDGLYTYSITQKTFEKVIP--ILGTKQIQAIL--QQSPTRIWVATEG--AGLFLINPKTKEIKNYLHSPSNPKSISSNY  264 (795)
T ss_dssp             SSSCEEEEETTTCCEEECC------CCCEEEEE--EEETTEEEEEEBS--SCEEEEETTTTEEEEECCCTTCTTSCSCSB
T ss_pred             CCCCEEEEeCCCCeEEEecC--CCCCCeeEEEE--EcCCCCEEEEECC--CCeEEEeCCCCeEEEeecCCCCccccCCCe
Confidence            44568899987766443211  11234567766  6677776654433  458889987765432211        2457


Q ss_pred             eeEEEECCCCCEEEEecCCCcEEEEEccCcceeeeec-------cccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCccc
Q 014475           83 IKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWH-------AHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVF  155 (424)
Q Consensus        83 v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~-------~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~  155 (424)
                      |.++...++|.+.+. +.+ -|.+||..+++......       .....|.++...++|. |..|+.++-|..|+..+..
T Consensus       265 i~~i~~d~~g~lWig-t~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~  341 (795)
T 4a2l_A          265 IRSLAMDSQNRLWIG-TFN-DLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGG-MWLGTYFGGLNYYHPIRNR  341 (795)
T ss_dssp             EEEEEECTTSCEEEE-ESS-CEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSC-EEEEESSSCEEEECGGGGS
T ss_pred             EEEEEEcCCCCEEEE-eCC-hhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcC-EEEEECCCCeEEeCCCccc
Confidence            999999988886554 445 48999987765433221       1236799999998887 5566777778899874421


Q ss_pred             chhcccccccceEEee----cCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeee---------cCccee
Q 014475          156 EECESQRASHLYLHSF----TGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV---------FPSVID  222 (424)
Q Consensus       156 ~~~~~~~~~~~~~~~~----~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~---------~~~~i~  222 (424)
                               .......    .-....|.++....++   .|..|+.++-|..||..+++......         ....|.
T Consensus       342 ---------~~~~~~~~~~~~l~~~~V~~i~~d~~g---~lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~  409 (795)
T 4a2l_A          342 ---------FKNIRNIPYKNSLSDNVVSCIVEDKDK---NLWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIK  409 (795)
T ss_dssp             ---------SEEECCCTTSSSCSCSSEEEEEECTTS---CEEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEE
T ss_pred             ---------ceEEcCCCCCCCCCCCeeEEEEECCCC---CEEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEE
Confidence                     1111000    1123457777766554   56778888789999987765433221         135688


Q ss_pred             EEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeee--ecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCC
Q 014475          223 AIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGS--LSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPIT  299 (424)
Q Consensus       223 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~--~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~  299 (424)
                      +++..++++.|.+|+.++-|..+|..++..       .....  ...+...|.++...+ +.+.+.. .+ -|.+||..+
T Consensus       410 ~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~-------~~~~~~~~~l~~~~v~~i~~d~~g~lwigt-~~-Gl~~~~~~~  480 (795)
T 4a2l_A          410 AVYVDEKKSLVYIGTHAGGLSILHRNSGQV-------ENFNQRNSQLVNENVYAILPDGEGNLWLGT-LS-ALVRFNPEQ  480 (795)
T ss_dssp             EEEEETTTTEEEEEETTTEEEEEETTTCCE-------EEECTTTSCCSCSCEEEEEECSSSCEEEEE-SS-CEEEEETTT
T ss_pred             EEEEcCCCCEEEEEeCcCceeEEeCCCCcE-------EEeecCCCCcCCCeeEEEEECCCCCEEEEe-cC-ceeEEeCCC
Confidence            998888888677888877899999887531       11110  002345788998887 6655544 44 488999887


Q ss_pred             CcEEEEEe------ccCCCeeEEEEEecCceeeeccCCCceeeccCCCCC
Q 014475          300 HNIVRMFR------LAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGSQ  343 (424)
Q Consensus       300 ~~~~~~~~------~~~~~v~~l~~s~~~~~l~~~~~d~~i~iw~~~~~~  343 (424)
                      ++......      .....|.++...++|...+...  +-+..|+..+.+
T Consensus       481 ~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~--~Gl~~~~~~~~~  528 (795)
T 4a2l_A          481 RSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGGE--EGLSVFKQEGLD  528 (795)
T ss_dssp             TEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEEES--SCEEEEEEETTE
T ss_pred             CeEEEccccccccccCCceEEEEEECCCCCEEEEeC--CceEEEeCCCCe
Confidence            65433221      1235789999988887666544  457777776543

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=99.15  E-value=1e-08  Score=95.03  Aligned_cols=237  Identities=9%  Similarity=-0.009  Sum_probs=154.1

Q ss_pred             EeecCCCCCceEEEeCCCCceEEEeeCCCCCCCceEEeccee-e-cCCCccccC-----------------CCCceeEEE
Q 014475            5 IASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRF-L-ASSQLREQP-----------------SASSGSILY   65 (424)
Q Consensus         5 lat~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~-~-~~~~~l~~~-----------------~~~~g~i~v   65 (424)
                      .++.. .++.|.+.|+.+.+..+.+.-..+  .....++  + . |++++++++                 ...++.+.+
T Consensus       105 fVnd~-~~~rVavIdl~t~~~~~ii~ip~g--~~phg~~--~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtv  179 (595)
T 1fwx_A          105 FMNDK-ANTRVARVRCDVMKCDAILEIPNA--KGIHGLR--PQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTA  179 (595)
T ss_dssp             EEEET-TTTEEEEEETTTTEEEEEEECSSC--CSEEEEE--ECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEE
T ss_pred             EEEcC-CCCEEEEEECCCceEeeEEeCCCC--CCCccee--eeecCCCcEEEEecccccccCCCCcccccccccCceEEE
Confidence            44555 678899999999998885532211  1233333  3 2 556555555                 455689999


Q ss_pred             EECCCCceeeeecCCCCeeEEEECCCCCEEEEecCCC--------------------------------------cEEEE
Q 014475           66 WSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSG--------------------------------------DIYMW  107 (424)
Q Consensus        66 wd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg--------------------------------------~v~iw  107 (424)
                      .|.++.+......-.+....++++|+|+++++.+.+.                                      .|.+.
T Consensus       180 ID~~t~~v~~qI~Vgg~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~VI  259 (595)
T 1fwx_A          180 VDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVV  259 (595)
T ss_dssp             EETTTTEEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEE
T ss_pred             EECCCCeEEEEEEeCCCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEEEE
Confidence            9999988776654434667888999999999887543                                      36777


Q ss_pred             EccC--cce-eeeeccccCCeEEEEEccCCcEEEEee-CCCcEEEEeCCcccchhccc-ccccceEEeecCCcCceeEEE
Q 014475          108 EVAS--GRL-LKKWHAHYRAVTCLVFSEDGSFLISGS-EDGCVRIWSLLTVFEECESQ-RASHLYLHSFTGHTLRITDIV  182 (424)
Q Consensus       108 d~~~--~~~-~~~~~~~~~~i~~~~~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~  182 (424)
                      |.++  ++. +..+.. .....++.++|||+++++++ .+.+|.++|+.+........ ........... -......++
T Consensus       260 D~~~~~~~~~~~~Ipv-g~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~-vG~gP~h~a  337 (595)
T 1fwx_A          260 DGRKEASSLFTRYIPI-ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE-LGLGPLHTA  337 (595)
T ss_dssp             ECSGGGCCSSEEEEEE-ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCB-CCSCEEEEE
T ss_pred             eCcccCCceeEEEEec-CCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcC-CCCCcceEE
Confidence            7776  444 344443 34567899999999877655 57799999997642111100 01111222332 234567789


Q ss_pred             EEEcCceeEEEEEeCCCcEEEEecCC----------CceeeeeecCcce------eEEEECCCCCEEEEEeCCC--cE--
Q 014475          183 IGYGGVSATIVSASEDRTCKVWSLLK----------GRLLRNIVFPSVI------DAIALDPAEHVFYAGSRDG--SI--  242 (424)
Q Consensus       183 ~~~~~~~~~l~~~~~d~~v~iwd~~~----------~~~~~~~~~~~~i------~~~~~~~~~~~l~~~~~dg--~i--  242 (424)
                      |++++  ...++...|+.|..||+.+          .+.+..+......      ..+..+|||++|++...-.  ++  
T Consensus       338 F~~dG--~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk~skdr~~~  415 (595)
T 1fwx_A          338 FDGRG--NAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSKFSKDRFLN  415 (595)
T ss_dssp             ECTTS--EEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEESCCTTSSCC
T ss_pred             ECCCC--eEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcCCCCcccccc
Confidence            99988  6777888899999999987          4556666533222      1224579999999976422  23  


Q ss_pred             ---------EEEEcCCC
Q 014475          243 ---------YIAALNAE  250 (424)
Q Consensus       243 ---------~i~d~~~~  250 (424)
                               .++|+..+
T Consensus       416 ~gp~~~~~~ql~dis~~  432 (595)
T 1fwx_A          416 VGPLKPENDQLIDISGD  432 (595)
T ss_dssp             CCSSCCEEEEEEECSSS
T ss_pred             CCCCCCCcceEEEcCCC
Confidence                     78888554

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=99.14  E-value=8e-08  Score=91.22  Aligned_cols=298  Identities=12%  Similarity=0.109  Sum_probs=171.8

Q ss_pred             EeecCCC-CCceEEEeC-CCCceEEEeeCCCCCC-Cc-------eEEecceeecCCCc----cccCCCCceeEEEEECCC
Q 014475            5 IASSSVA-DTGIGCWDL-ESGAEQLRYKSCASPP-HG-------LACVGQRFLASSQL----REQPSASSGSILYWSWSK   70 (424)
Q Consensus         5 lat~~~~-dg~i~vwd~-~~~~~~~~~~~~~~~~-~~-------v~~~~~~~~~~~~~----l~~~~~~~g~i~vwd~~~   70 (424)
                      |+.++ . ++.|.-+|. ++|+.+-++....... ..       ...++  +.|.+..    +++++.+ +.|..+|..+
T Consensus        65 vyv~~-~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~a--v~p~~g~~~~rV~v~t~d-g~l~AlDa~T  140 (599)
T 1w6s_A           65 MYIHT-SFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLA--YWPGDGKTPALILKTQLD-GNVAALNAET  140 (599)
T ss_dssp             EEEEC-STTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCE--EECCCSSSCCEEEEECTT-SEEEEEETTT
T ss_pred             EEEEe-CCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceE--EEecCCcceeEEEEEcCC-CEEEEEECCC
Confidence            44555 5 789999999 9999997775432210 00       01122  4334444    6666666 9999999999


Q ss_pred             CceeeeecCCC-----CeeE-EEECCCCCEEEEec------CCCcEEEEEccCcceeeeeccccCC--------------
Q 014475           71 PQVEVKSLPAE-----PIKP-IAANSHGTYIAGGG------QSGDIYMWEVASGRLLKKWHAHYRA--------------  124 (424)
Q Consensus        71 ~~~~~~~~~~~-----~v~~-~~~s~~~~~l~~~~------~dg~v~iwd~~~~~~~~~~~~~~~~--------------  124 (424)
                      ++.........     .+.+ -.+. ++ .+++++      .+|.|+-+|.++|+.+..+......              
T Consensus       141 G~~~W~~~~~~~~~~~~~~ssP~v~-~g-~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~  218 (599)
T 1w6s_A          141 GETVWKVENSDIKVGSTLTIAPYVV-KD-KVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNP  218 (599)
T ss_dssp             CCEEEEEECCCGGGTCBCCSCCEEE-TT-EEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCG
T ss_pred             CCEEEeecCCCCCccceeecCCEEE-CC-EEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCccccccccccccccc
Confidence            98876643322     1211 1111 34 455554      3789999999999987765422110              


Q ss_pred             -----------------------e-EEEEEccCCcEEEEeeCC----------------CcEEEEeCCcccchhcccccc
Q 014475          125 -----------------------V-TCLVFSEDGSFLISGSED----------------GCVRIWSLLTVFEECESQRAS  164 (424)
Q Consensus       125 -----------------------i-~~~~~~~~~~~l~s~~~d----------------g~i~iwd~~~~~~~~~~~~~~  164 (424)
                                             + ..+++.++...++.+..+                +.|..+|.+++..        
T Consensus       219 ~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~--------  290 (599)
T 1w6s_A          219 HYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEA--------  290 (599)
T ss_dssp             GGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCE--------
T ss_pred             cccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCce--------
Confidence                                   0 134566666677766654                3788888877432        


Q ss_pred             cceEEeecCCc--------CceeEEEEE-EcCce-eEEEEEeCCCcEEEEecCCCceeeeeecCc--------------c
Q 014475          165 HLYLHSFTGHT--------LRITDIVIG-YGGVS-ATIVSASEDRTCKVWSLLKGRLLRNIVFPS--------------V  220 (424)
Q Consensus       165 ~~~~~~~~~~~--------~~i~~~~~~-~~~~~-~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~--------------~  220 (424)
                       ........|.        .++. +... .++.. ..++.++.+|.+.++|.++++.+.......              +
T Consensus       291 -~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p  368 (599)
T 1w6s_A          291 -KFGYQKTPHDEWDYAGVNVMML-SEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSVDLKTGQP  368 (599)
T ss_dssp             -EEEEESSTTCSSCCCCCCCCEE-EEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCCE
T ss_pred             -eeEeecCCCccccccCCCccEE-EeccccCCcEEEEEEEECCCcEEEEEECCCCCEeecccccCCcccccccccCCCce
Confidence             2222222221        1121 1111 12211 457778899999999999999887665221              1


Q ss_pred             e--------------------------eEEEECCCCCEEEEEeC------------------------------------
Q 014475          221 I--------------------------DAIALDPAEHVFYAGSR------------------------------------  238 (424)
Q Consensus       221 i--------------------------~~~~~~~~~~~l~~~~~------------------------------------  238 (424)
                      +                          ..++++|+..++++...                                    
T Consensus       369 ~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~  448 (599)
T 1w6s_A          369 VRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQN  448 (599)
T ss_dssp             EECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTT
T ss_pred             eeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCCcceecccceeccCCcCCccc
Confidence            1                          23566777666665432                                    


Q ss_pred             ---CCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEec-CCCEEEEeCCCCcEEEEeCCCCcEEEEEeccCCCe-
Q 014475          239 ---DGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYS-TGDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPV-  313 (424)
Q Consensus       239 ---dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~v-  313 (424)
                         .|.+..||+.+++.         +-... +..+...-... .+.+++.++.||.++.||.++|+.+.+++...+.+ 
T Consensus       449 ~~~~G~l~A~D~~tG~~---------~W~~~-~~~~~~~g~~~tagg~vf~gt~dg~l~A~D~~tG~~lW~~~l~~g~~~  518 (599)
T 1w6s_A          449 YEGLGQIKAYNAITGDY---------KWEKM-ERFAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIG  518 (599)
T ss_dssp             TBCCEEEEEECTTTCCE---------EEEEE-ESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCS
T ss_pred             CCCcCeEEEEECCCCCE---------EeEec-CCCCccCcceEecCCEEEEECCCCeEEEEECCCCCEEEEeeCCCCcEe
Confidence               34566666665531         11111 11111110111 26788889999999999999999999987554322 


Q ss_pred             eEEEEEecCc-eeeec
Q 014475          314 NNILVVRRPL-YLNLG  328 (424)
Q Consensus       314 ~~l~~s~~~~-~l~~~  328 (424)
                      .-+.+..+|+ |+++.
T Consensus       519 ~P~~y~~~G~qyv~~~  534 (599)
T 1w6s_A          519 YPMTYTHKGTQYVAIY  534 (599)
T ss_dssp             CCEEEEETTEEEEEEE
T ss_pred             ccEEEEeCCEEEEEEE
Confidence            2355667776 44443

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=99.13  E-value=6.4e-08  Score=92.02  Aligned_cols=305  Identities=14%  Similarity=0.153  Sum_probs=172.0

Q ss_pred             CceEEEeCCCCceEEEeeCCCCCCCceEE--ecceeecCCCccccCCCCceeEEEEECCCCceeeeecCCC-----Cee-
Q 014475           13 TGIGCWDLESGAEQLRYKSCASPPHGLAC--VGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSLPAE-----PIK-   84 (424)
Q Consensus        13 g~i~vwd~~~~~~~~~~~~~~~~~~~v~~--~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~~~~~~-----~v~-   84 (424)
                      +.|.-+|.++|+.+-++...........|  +.......+..+++++.+ +.|..+|..+++.........     .+. 
T Consensus        78 ~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~~~~~v~~~t~d-g~l~AlD~~TG~~~W~~~~~~~~~~~~~~~  156 (582)
T 1flg_A           78 SRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAIYGDKVFFGTLD-ASVVALNKNTGKVVWKKKFADHGAGYTMTG  156 (582)
T ss_dssp             TEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEEETTEEEEEETT-TEEEEEESSSCCEEEEEECSCGGGTCBCCS
T ss_pred             CCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEEECCEEEEEeCC-CEEEEEECCCCCEEeeecCCCCCcCccccc
Confidence            34999999999998777654322110000  000011134455555555 899999999998876643221     111 


Q ss_pred             --EEEEC-CCCC-EEEEec------CCCcEEEEEccCcceeeeeccccCCe-----------------------------
Q 014475           85 --PIAAN-SHGT-YIAGGG------QSGDIYMWEVASGRLLKKWHAHYRAV-----------------------------  125 (424)
Q Consensus        85 --~~~~s-~~~~-~l~~~~------~dg~v~iwd~~~~~~~~~~~~~~~~i-----------------------------  125 (424)
                        .+.=. .+++ .+++++      .+|.|+-+|.++|+.+.........+                             
T Consensus       157 sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~~~~~~~~p~~~~~~~~~g~~g~~~w~~~~~~~~g~  236 (582)
T 1flg_A          157 APTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTVTGDVKAPSWPDDRNSPTGK  236 (582)
T ss_dssp             CCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCEEEETTEEEEESSCTTCTTSCBCTTSTTSB
T ss_pred             CCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeecCCCccccccccCcccccccccccccCCCcccccccc
Confidence              11111 1233 566654      37899999999998876543211000                             


Q ss_pred             ------------EEEEEccCCcEEEEeeC--------------------C----CcEEEEeCCcccchhcccccccceEE
Q 014475          126 ------------TCLVFSEDGSFLISGSE--------------------D----GCVRIWSLLTVFEECESQRASHLYLH  169 (424)
Q Consensus       126 ------------~~~~~~~~~~~l~s~~~--------------------d----g~i~iwd~~~~~~~~~~~~~~~~~~~  169 (424)
                                  ..+++.|+...++.+..                    |    +.|..+|..++..         ....
T Consensus       237 ~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~---------~W~~  307 (582)
T 1flg_A          237 VESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEV---------KWFY  307 (582)
T ss_dssp             CGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCE---------EEEE
T ss_pred             ccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCE---------EEEE
Confidence                        12456666666665553                    2    5788889877432         2222


Q ss_pred             eecCCcC----cee-EEEEE---EcCce-eEEEEEeCCCcEEEEecCCCceeeeeecCcce-------------------
Q 014475          170 SFTGHTL----RIT-DIVIG---YGGVS-ATIVSASEDRTCKVWSLLKGRLLRNIVFPSVI-------------------  221 (424)
Q Consensus       170 ~~~~~~~----~i~-~~~~~---~~~~~-~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~i-------------------  221 (424)
                      ....|..    .+. -+.+.   .++.. ..++.++.+|.+.++|.++++.+..+.....+                   
T Consensus       308 q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~  387 (582)
T 1flg_A          308 QHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNITWASHIDLKTGRPVEREGQ  387 (582)
T ss_dssp             ESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCCSEEEECTTTCCEEECTTC
T ss_pred             eCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCccccccccccCCCEeEcccc
Confidence            2222211    011 12222   13311 36788999999999999999988766532100                   


Q ss_pred             ---------------------------eEEEECCCCCEEEEEeC---------------------------------CCc
Q 014475          222 ---------------------------DAIALDPAEHVFYAGSR---------------------------------DGS  241 (424)
Q Consensus       222 ---------------------------~~~~~~~~~~~l~~~~~---------------------------------dg~  241 (424)
                                                 ..++++|+...+++...                                 +|.
T Consensus       388 ~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~  467 (582)
T 1flg_A          388 RPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGS  467 (582)
T ss_dssp             SCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEESCSSCSEE
T ss_pred             CCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcceeeecccccccCCCceeccceeecCCCCCCcce
Confidence                                       13456666556655432                                 466


Q ss_pred             EEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEec-CCCEEEEeCCCCcEEEEeCCCCcEEEEEeccCCCe-eEEEEE
Q 014475          242 IYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYS-TGDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPV-NNILVV  319 (424)
Q Consensus       242 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~v-~~l~~s  319 (424)
                      |..||+.+++.         +-..... .++..-... .+.+++.++.||.++.||.++|+.+.+++...+.. .-+.+.
T Consensus       468 l~A~D~~tG~~---------~W~~~~~-~~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~~~~~g~~a~P~~y~  537 (582)
T 1flg_A          468 LRAMDPVSGKV---------VWEHKEH-LPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWE  537 (582)
T ss_dssp             EEEECTTTCCE---------EEEEEES-SCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEE
T ss_pred             EEEEECCCCCE---------EEEecCC-CCCcccceEeCCCEEEEECCCCcEEEEECCCCCEEEEecCCCCcccCceEEE
Confidence            77788777642         1111111 111111111 27788889999999999999999999998654322 236677


Q ss_pred             ecCc-eeeecc-CCCceeec
Q 014475          320 RRPL-YLNLGS-FSNPHTSS  337 (424)
Q Consensus       320 ~~~~-~l~~~~-~d~~i~iw  337 (424)
                      .+|+ |+++.+ ..|.+-+|
T Consensus       538 ~~G~qYv~~~~G~gg~~~~~  557 (582)
T 1flg_A          538 QDGEQYLGVTVGYGGAVPLW  557 (582)
T ss_dssp             ETTEEEEEEEECCCSHHHHH
T ss_pred             ECCEEEEEEEccCCCccccc
Confidence            8886 444432 23445555

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=99.11  E-value=8.4e-08  Score=84.53  Aligned_cols=239  Identities=10%  Similarity=0.009  Sum_probs=150.5

Q ss_pred             CCeeEEEECCCCCEEEEecCCCcEEEEEccCcceeeeec--------------------cccCCeEEEEEcc-CCcEEEE
Q 014475           81 EPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWH--------------------AHYRAVTCLVFSE-DGSFLIS  139 (424)
Q Consensus        81 ~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~--------------------~~~~~i~~~~~~~-~~~~l~s  139 (424)
                      ....+++++++++++.++..++.|..|+..+++.. .+.                    .....+..+++.+ +++ |+.
T Consensus        19 ~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~-l~v   96 (322)
T 2fp8_A           19 YAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFV-DFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQ-LYI   96 (322)
T ss_dssp             SCCCCEECCTTCSSEEEECTTSEEEEECCTTTCEE-EEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTE-EEE
T ss_pred             CCceEEEEcCCCCEEEEEcCCCeEEEECCCCCceE-EEecccccccccccccccchhccccCCCCceEEEcCCCCc-EEE
Confidence            34678889999987778888899999998765432 221                    1123578999997 665 454


Q ss_pred             eeCCCcEEEEeCCcccchhcccccccceEEeecC-CcCceeEEEEEE-cCceeEEEEEeC-----------------CCc
Q 014475          140 GSEDGCVRIWSLLTVFEECESQRASHLYLHSFTG-HTLRITDIVIGY-GGVSATIVSASE-----------------DRT  200 (424)
Q Consensus       140 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~-~~~~~~l~~~~~-----------------d~~  200 (424)
                      +...+.|..+|..++..        ........+ .......+++.+ ++  ...++-..                 ++.
T Consensus        97 ~d~~~~i~~~d~~~g~~--------~~~~~~~~~~~~~~p~~i~~d~~~G--~l~v~d~~~~~~~~~~~~~~~~~~~~g~  166 (322)
T 2fp8_A           97 VDCYYHLSVVGSEGGHA--------TQLATSVDGVPFKWLYAVTVDQRTG--IVYFTDVSTLYDDRGVQQIMDTSDKTGR  166 (322)
T ss_dssp             EETTTEEEEECTTCEEC--------EEEESEETTEECSCEEEEEECTTTC--CEEEEESCSSCCTTCHHHHHHHTCCCEE
T ss_pred             EECCCCEEEEeCCCCEE--------EEecccCCCCcccccceEEEecCCC--EEEEECCcccccccccceehcccCCCce
Confidence            54445588888754211        000001111 113457788887 66  55554322                 367


Q ss_pred             EEEEecCCCceeeeeecCcceeEEEECCCCCEEEEE-eCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC
Q 014475          201 CKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAG-SRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST  279 (424)
Q Consensus       201 v~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  279 (424)
                      |..+|..+++.............++++|+++.|+++ +..+.|..|++......    ........   .+ ...+++.+
T Consensus       167 v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~----~~~~~~~~---~g-P~gi~~d~  238 (322)
T 2fp8_A          167 LIKYDPSTKETTLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKG----TAEVLVKI---PN-PGNIKRNA  238 (322)
T ss_dssp             EEEEETTTTEEEEEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTT----CEEEEEEC---SS-EEEEEECT
T ss_pred             EEEEeCCCCEEEEeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCC----ccceEEeC---CC-CCCeEECC
Confidence            888998776644333333456779999999877666 55689999998753210    01112221   23 67889988


Q ss_pred             -CCEEEEeCC----------CCcEEEEeCCCCcEEEEEeccC----CCeeEEEEEecCceeeeccCCCceeeccCCC
Q 014475          280 -GDLLISGSE----------DGMVRVWDPITHNIVRMFRLAK----GPVNNILVVRRPLYLNLGSFSNPHTSSRRHG  341 (424)
Q Consensus       280 -~~~l~t~~~----------dg~i~iwd~~~~~~~~~~~~~~----~~v~~l~~s~~~~~l~~~~~d~~i~iw~~~~  341 (424)
                       +++.++...          .+.|..+|. .++.+..+....    ..++.+++ .+++..++....+.|..+++..
T Consensus       239 ~G~l~va~~~~~~~~~~~~~~~~v~~~d~-~G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~~  313 (322)
T 2fp8_A          239 DGHFWVSSSEELDGNMHGRVDPKGIKFDE-FGNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILVYDK  313 (322)
T ss_dssp             TSCEEEEEEEETTSSTTSCEEEEEEEECT-TSCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEEC--
T ss_pred             CCCEEEEecCcccccccCCCccEEEEECC-CCCEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCceEEEeccc
Confidence             777666544          467889986 488888776543    34667766 5677777777788888888753

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=99.08  E-value=2.2e-07  Score=79.44  Aligned_cols=239  Identities=10%  Similarity=-0.048  Sum_probs=141.8

Q ss_pred             CceEEEeCCCCceE-----EEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCceeeeec-CCCCeeEE
Q 014475           13 TGIGCWDLESGAEQ-----LRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSL-PAEPIKPI   86 (424)
Q Consensus        13 g~i~vwd~~~~~~~-----~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~~~-~~~~v~~~   86 (424)
                      +.|+.+++......     ..+..   +......++  +.+++..+..+...++.|..++.++........ .......+
T Consensus        10 ~~I~~~~~~g~~~~~~~~~~~~~~---~~~~~~gi~--~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~i   84 (267)
T 1npe_A           10 GKIERLPLERNTMKKTEAKAFLHI---PAKVIIGLA--FDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGI   84 (267)
T ss_dssp             EEEEEEEESSSCBCGGGCEEEEEE---EEEEEEEEE--EETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEE
T ss_pred             CeEEEEEecCcccccccceeeecC---CCCcEEEEE--EecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCccEE
Confidence            47999998754321     11111   112345666  898776666665444899999998765433222 23578999


Q ss_pred             EECCCCCEE-EEecCCCcEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEeeC---CCcEEEEeCCcccchhcccc
Q 014475           87 AANSHGTYI-AGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSE---DGCVRIWSLLTVFEECESQR  162 (424)
Q Consensus        87 ~~s~~~~~l-~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~---dg~i~iwd~~~~~~~~~~~~  162 (424)
                      +++|++..| ++-...+.|.++++..................++++|++..|..+..   .+.|..+++...        
T Consensus        85 a~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~--------  156 (267)
T 1npe_A           85 ALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGT--------  156 (267)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSC--------
T ss_pred             EEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCC--------
Confidence            999975544 45455678999998644322222222356789999996555554443   367888887431        


Q ss_pred             cccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeeecCcceeEEEECCCCCEEEEEe-CCCc
Q 014475          163 ASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGS-RDGS  241 (424)
Q Consensus       163 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~  241 (424)
                       ....+  ..........+++++++. ..+++-...+.|..+|+........+........++..  +..++++. ..+.
T Consensus       157 -~~~~~--~~~~~~~P~gia~d~~~~-~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~P~gi~~d--~~~lyva~~~~~~  230 (267)
T 1npe_A          157 -NRRIL--AQDNLGLPNGLTFDAFSS-QLCWVDAGTHRAECLNPAQPGRRKVLEGLQYPFAVTSY--GKNLYYTDWKTNS  230 (267)
T ss_dssp             -CCEEE--ECTTCSCEEEEEEETTTT-EEEEEETTTTEEEEEETTEEEEEEEEECCCSEEEEEEE--TTEEEEEETTTTE
T ss_pred             -CcEEE--EECCCCCCcEEEEcCCCC-EEEEEECCCCEEEEEecCCCceEEEecCCCCceEEEEe--CCEEEEEECCCCe
Confidence             11111  112234567889998752 45556666789999998765443333333334566654  44555544 5689


Q ss_pred             EEEEEcCCCCCCCCCcCceeeeeecccC-cCeEEEEecC
Q 014475          242 IYIAALNAESPSTSSYGMHIIGSLSDHS-KAVTCLAYST  279 (424)
Q Consensus       242 i~i~d~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~  279 (424)
                      |..+|..++         +.+..+.... .....+++.|
T Consensus       231 v~~~d~~~g---------~~~~~i~~g~~~~p~gi~~~~  260 (267)
T 1npe_A          231 VIAMDLAIS---------KEMDTFHPHKQTRLYGITIAL  260 (267)
T ss_dssp             EEEEETTTT---------EEEEEECCSSCCCCCCEEEEC
T ss_pred             EEEEeCCCC---------CceEEEccccccccceeeecC
Confidence            999999876         3344443222 2355666665

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=99.06  E-value=2.2e-08  Score=97.16  Aligned_cols=287  Identities=10%  Similarity=0.063  Sum_probs=169.1

Q ss_pred             CccccCCCCceeEEEEECCCCceeeeecCCCCe------------eEEEECCCCCEEEEecCCCcEEEEEccCcceeeee
Q 014475           51 QLREQPSASSGSILYWSWSKPQVEVKSLPAEPI------------KPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKW  118 (424)
Q Consensus        51 ~~l~~~~~~~g~i~vwd~~~~~~~~~~~~~~~v------------~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~  118 (424)
                      ..+++++.+ +.|.-+|..+++..++.......            ..+.+  .+..+++++.|+.|..+|.++|+.+..+
T Consensus        67 g~vyv~~~~-~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~~W~~  143 (668)
T 1kv9_A           67 GVIYTSMSW-SRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL--WGDKVYVGTLDGRLIALDAKTGKAIWSQ  143 (668)
T ss_dssp             TEEEEEEGG-GEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--EBTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             CEEEEECCC-CeEEEEECCCChhceEECCCCCccccccccccCCccceEE--ECCEEEEEcCCCEEEEEECCCCCEeeee
Confidence            344444444 88999999998887765432211            11222  3557788888999999999999988776


Q ss_pred             cccc----CCeEE-EEEccCCcEEEEeeC------CCcEEEEeCCcccchhcccccccceE------------Eeec---
Q 014475          119 HAHY----RAVTC-LVFSEDGSFLISGSE------DGCVRIWSLLTVFEECESQRASHLYL------------HSFT---  172 (424)
Q Consensus       119 ~~~~----~~i~~-~~~~~~~~~l~s~~~------dg~i~iwd~~~~~~~~~~~~~~~~~~------------~~~~---  172 (424)
                      ....    ..+.+ .... ++ .++++..      +|.|..+|.+++..............            ..+.   
T Consensus       144 ~~~~~~~~~~~~~~P~v~-~~-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~  221 (668)
T 1kv9_A          144 QTTDPAKPYSITGAPRVV-KG-KVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQ  221 (668)
T ss_dssp             ECSCTTSSCBCCSCCEEE-TT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSC
T ss_pred             ccCCCCCcceecCCCEEE-CC-EEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCccc
Confidence            5421    11111 1111 34 4444433      58899999988654332211000000            0000   


Q ss_pred             -----CCcCceeEEEEEEcCceeEEEEEeCCC-------------------cEEEEecCCCceeeeeecC----------
Q 014475          173 -----GHTLRITDIVIGYGGVSATIVSASEDR-------------------TCKVWSLLKGRLLRNIVFP----------  218 (424)
Q Consensus       173 -----~~~~~i~~~~~~~~~~~~~l~~~~~d~-------------------~v~iwd~~~~~~~~~~~~~----------  218 (424)
                           ++......+++.+..  ..++.++.++                   .|..+|.++++.+..+...          
T Consensus       222 ~w~~~~gg~~w~~~a~d~~~--~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~  299 (668)
T 1kv9_A          222 YWKLGGGGTVWDSMAYDPEL--DLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTAT  299 (668)
T ss_dssp             HHHHCEECCCCSCEEEETTT--TEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCC
T ss_pred             eeeeCCCCccccceEEcCCC--CEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCC
Confidence                 011112345666665  6777776665                   3999999999998887632          


Q ss_pred             cceeEEEECCCCC---EEEEEeCCCcEEEEEcCCCCCCCCCc----Cc---------eeee------------eecccCc
Q 014475          219 SVIDAIALDPAEH---VFYAGSRDGSIYIAALNAESPSTSSY----GM---------HIIG------------SLSDHSK  270 (424)
Q Consensus       219 ~~i~~~~~~~~~~---~l~~~~~dg~i~i~d~~~~~~~~~~~----~~---------~~~~------------~~~~~~~  270 (424)
                      .+.....+..+++   .++.++.+|.++++|..+++......    .+         .++.            ...+..+
T Consensus       300 ~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G  379 (668)
T 1kv9_A          300 QQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFG  379 (668)
T ss_dssp             SCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTC
T ss_pred             CCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCccccccccccCCeeEECCCCcc
Confidence            2222222223554   68889999999999998876431000    00         0000            0000000


Q ss_pred             --CeEEEEecC-CCEEEE------------------------------------eCCCCcEEEEeCCCCcEEEEEeccCC
Q 014475          271 --AVTCLAYST-GDLLIS------------------------------------GSEDGMVRVWDPITHNIVRMFRLAKG  311 (424)
Q Consensus       271 --~i~~~~~~~-~~~l~t------------------------------------~~~dg~i~iwd~~~~~~~~~~~~~~~  311 (424)
                        .-..++++| ...++.                                    ...+|.|..||+.+++.+.+...+ .
T Consensus       380 ~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~~-~  458 (668)
T 1kv9_A          380 AHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYP-T  458 (668)
T ss_dssp             SSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEES-S
T ss_pred             ccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEccCC-C
Confidence              001255666 344332                                    113488999999999998887743 4


Q ss_pred             CeeEEEEEecCceeeeccCCCceeeccCCCCCCC
Q 014475          312 PVNNILVVRRPLYLNLGSFSNPHTSSRRHGSQLP  345 (424)
Q Consensus       312 ~v~~l~~s~~~~~l~~~~~d~~i~iw~~~~~~~~  345 (424)
                      +.....+...+..++.++.|+.++.||..+++..
T Consensus       459 ~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l  492 (668)
T 1kv9_A          459 HWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEAL  492 (668)
T ss_dssp             SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred             CCcCceeEeCCCEEEEECCcccchhhhhhcChhh
Confidence            4555566677888999999999999999987653

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=99.05  E-value=2.7e-06  Score=84.68  Aligned_cols=298  Identities=14%  Similarity=0.093  Sum_probs=184.4

Q ss_pred             CCceEEEeCCCCceEEEeeCC----CCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCceeeee--------cC
Q 014475           12 DTGIGCWDLESGAEQLRYKSC----ASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKS--------LP   79 (424)
Q Consensus        12 dg~i~vwd~~~~~~~~~~~~~----~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~~--------~~   79 (424)
                      ++.+.+||..+++........    .-....|.++.  ..++|.+.+.+ .  +-|.+|+..+.......        ..
T Consensus       234 ~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~--~d~~g~lWigt-~--~Gl~~~~~~~~~~~~~~~~~~~~~~l~  308 (795)
T 4a2l_A          234 GAGLFLINPKTKEIKNYLHSPSNPKSISSNYIRSLA--MDSQNRLWIGT-F--NDLNIYHEGTDSFASYSSNPVENGSLS  308 (795)
T ss_dssp             SSCEEEEETTTTEEEEECCCTTCTTSCSCSBEEEEE--ECTTSCEEEEE-S--SCEEEEETTTTEEEEECCCTTSTTSCS
T ss_pred             CCCeEEEeCCCCeEEEeecCCCCccccCCCeEEEEE--EcCCCCEEEEe-C--ChhheEcCCCCeEEEEecCCCCCCCCC
Confidence            345889998776544322111    11235678877  77777765544 3  35888998776544321        12


Q ss_pred             CCCeeEEEECCCCCEEEEecCCCcEEEEEccCcceeeeec------cccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCc
Q 014475           80 AEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWH------AHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLT  153 (424)
Q Consensus        80 ~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~------~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~  153 (424)
                      ...|.++...++|.+. .|+.++-|..|+..++.......      .....|.++...++++ |..|+.++-|..||..+
T Consensus       309 ~~~i~~i~~D~~g~lW-igt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g~-lWiGt~~~Gl~~~~~~~  386 (795)
T 4a2l_A          309 QRSVRSIFMDSQGGMW-LGTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDKDKN-LWIGTNDGGLNLYNPIT  386 (795)
T ss_dssp             SSCEEEEEECTTSCEE-EEESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECTTSC-EEEEESSSCEEEECTTT
T ss_pred             CCcEEEEEEeCCcCEE-EEECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECCCCC-EEEEECCCCeEEEcCCC
Confidence            4679999999988754 56666679999876654322111      1245699999988876 55577777799999854


Q ss_pred             ccchhcccccccceEEee------cCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeee-----cCccee
Q 014475          154 VFEECESQRASHLYLHSF------TGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-----FPSVID  222 (424)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~------~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~-----~~~~i~  222 (424)
                      ..         .......      ......|.++...+++  ..|..|+.++-|..+|..+++......     ....|.
T Consensus       387 ~~---------~~~~~~~~~~~~~~l~~~~v~~i~~d~~g--~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~  455 (795)
T 4a2l_A          387 QR---------FTSYTLQEDESARGIGSNNIKAVYVDEKK--SLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVY  455 (795)
T ss_dssp             CC---------EEEECCC------CCSCSCEEEEEEETTT--TEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEE
T ss_pred             Cc---------EEEEecCCCCcccCCCCccEEEEEEcCCC--CEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeE
Confidence            21         1000000      0123567888776665  547788887889999988776433221     235688


Q ss_pred             EEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeee----cccCcCeEEEEecC-CCEEEEeCCCCcEEEEeC
Q 014475          223 AIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSL----SDHSKAVTCLAYST-GDLLISGSEDGMVRVWDP  297 (424)
Q Consensus       223 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~----~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~  297 (424)
                      ++...+++.+.+ |+. +.+.+||..++..       ......    .-....|.++...+ +.+.+.. . +-|..||.
T Consensus       456 ~i~~d~~g~lwi-gt~-~Gl~~~~~~~~~~-------~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt-~-~Gl~~~~~  524 (795)
T 4a2l_A          456 AILPDGEGNLWL-GTL-SALVRFNPEQRSF-------TTIEKEKDGTPVVSKQITTLFRDSHKRLWIGG-E-EGLSVFKQ  524 (795)
T ss_dssp             EEEECSSSCEEE-EES-SCEEEEETTTTEE-------EECCBCTTCCBCCCCCEEEEEECTTCCEEEEE-S-SCEEEEEE
T ss_pred             EEEECCCCCEEE-Eec-CceeEEeCCCCeE-------EEccccccccccCCceEEEEEECCCCCEEEEe-C-CceEEEeC
Confidence            999888887544 445 4588999876431       111110    11236788998888 6555544 4 45888998


Q ss_pred             CCCcEEEEEe-------ccCCCeeEEEEEecCceeeeccCCCceeeccCCCC
Q 014475          298 ITHNIVRMFR-------LAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGS  342 (424)
Q Consensus       298 ~~~~~~~~~~-------~~~~~v~~l~~s~~~~~l~~~~~d~~i~iw~~~~~  342 (424)
                      .+++.  .+.       .+...|.++...++|...++.. . -+..|+..+.
T Consensus       525 ~~~~~--~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~-~-Gl~~~d~~~~  572 (795)
T 4a2l_A          525 EGLDI--QKASILPVSNVTKLFTNCIYEASNGIIWVGTR-E-GFYCFNEKDK  572 (795)
T ss_dssp             ETTEE--EECCCSCSCGGGGSCEEEEEECTTSCEEEEES-S-CEEEEETTTT
T ss_pred             CCCeE--EEecCCCCCCCCCCeeEEEEECCCCCEEEEeC-C-CceeECCCCC
Confidence            77665  332       2335788999888887655443 3 5677776544

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=99.04  E-value=1.2e-07  Score=79.63  Aligned_cols=204  Identities=12%  Similarity=0.079  Sum_probs=136.4

Q ss_pred             ceeeeeccccC--CeEEEEEccCCcEEEEeeC--CCcEEEEeCCcccchhcccccccceEEeec--CCcCceeEEEEEEc
Q 014475          113 RLLKKWHAHYR--AVTCLVFSEDGSFLISGSE--DGCVRIWSLLTVFEECESQRASHLYLHSFT--GHTLRITDIVIGYG  186 (424)
Q Consensus       113 ~~~~~~~~~~~--~i~~~~~~~~~~~l~s~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~  186 (424)
                      +.+.++. |..  ....+.|++++.++++.+.  ++.|.++|+.++.           .+..+.  .+.. ...+++.  
T Consensus        10 ~vv~~~p-~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~-----------v~~~i~l~~~~f-geGi~~~--   74 (266)
T 2iwa_A           10 EVLNEFP-HDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGK-----------VENIHKMDDSYF-GEGLTLL--   74 (266)
T ss_dssp             EEEEEEE-CCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCC-----------EEEEEECCTTCC-EEEEEEE--
T ss_pred             eEEEEEE-CCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCC-----------EEEEEecCCCcc-eEEEEEe--
Confidence            4455553 443  3689999998765555543  5799999997743           222222  2211 1234443  


Q ss_pred             CceeEEEEEeCCCcEEEEecCCCceeeeeecCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeec
Q 014475          187 GVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLS  266 (424)
Q Consensus       187 ~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~  266 (424)
                      +. ...++.-.++.+.++|..+.+.+..+..+ .-....++++++.++++..++.|.++|..+..         .+..+.
T Consensus        75 g~-~lyv~t~~~~~v~viD~~t~~v~~~i~~g-~~~g~glt~Dg~~l~vs~gs~~l~viD~~t~~---------v~~~I~  143 (266)
T 2iwa_A           75 NE-KLYQVVWLKNIGFIYDRRTLSNIKNFTHQ-MKDGWGLATDGKILYGSDGTSILYEIDPHTFK---------LIKKHN  143 (266)
T ss_dssp             TT-EEEEEETTCSEEEEEETTTTEEEEEEECC-SSSCCEEEECSSSEEEECSSSEEEEECTTTCC---------EEEEEE
T ss_pred             CC-EEEEEEecCCEEEEEECCCCcEEEEEECC-CCCeEEEEECCCEEEEECCCCeEEEEECCCCc---------EEEEEE
Confidence            42 55556667889999999999999988754 11223455678888888788899999998853         233322


Q ss_pred             c--c---CcCeEEEEecCCCEEEEeCCCCcEEEEeCCCCcEEEEEeccC-------------CCeeEEEEEecCce-eee
Q 014475          267 D--H---SKAVTCLAYSTGDLLISGSEDGMVRVWDPITHNIVRMFRLAK-------------GPVNNILVVRRPLY-LNL  327 (424)
Q Consensus       267 ~--~---~~~i~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~-------------~~v~~l~~s~~~~~-l~~  327 (424)
                      -  +   -..++.+.|..+..++....++.|.+.|..+++.+..+....             .....++|+|+++. +++
T Consensus       144 Vg~~~~p~~~~nele~~dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVT  223 (266)
T 2iwa_A          144 VKYNGHRVIRLNELEYINGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVT  223 (266)
T ss_dssp             CEETTEECCCEEEEEEETTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEE
T ss_pred             ECCCCcccccceeEEEECCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEE
Confidence            1  1   123667777766555666578899999999999999987421             24589999999764 566


Q ss_pred             ccCCCceeeccCCCC
Q 014475          328 GSFSNPHTSSRRHGS  342 (424)
Q Consensus       328 ~~~d~~i~iw~~~~~  342 (424)
                      +...+.+..-++...
T Consensus       224 gk~~~~v~~i~l~~~  238 (266)
T 2iwa_A          224 GKLWPKLFEIKLHLV  238 (266)
T ss_dssp             ETTCSEEEEEEEEEC
T ss_pred             CCCCCeEEEEEEecc
Confidence            767888887777643

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.98  E-value=2.7e-07  Score=76.61  Aligned_cols=190  Identities=12%  Similarity=0.130  Sum_probs=126.7

Q ss_pred             eeeeeccccCC--eEEEEEccCCcEEEEeeCCC--cEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCce
Q 014475          114 LLKKWHAHYRA--VTCLVFSEDGSFLISGSEDG--CVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVS  189 (424)
Q Consensus       114 ~~~~~~~~~~~--i~~~~~~~~~~~l~s~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  189 (424)
                      .+.++ .|...  ...+.|+ ++.++.+.+.+|  .|+.+|+.++..           +...... ......-+.+.++ 
T Consensus        33 vv~~~-phd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv-----------~~~~~l~-~~~FgeGit~~g~-   97 (262)
T 3nol_A           33 IVHSY-PHDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKT-----------LQQIELG-KRYFGEGISDWKD-   97 (262)
T ss_dssp             EEEEE-ECCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCE-----------EEEEECC-TTCCEEEEEEETT-
T ss_pred             EEEEe-cCCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcE-----------EEEEecC-CccceeEEEEeCC-
Confidence            45555 35544  3788998 677777888776  899999977432           2222211 2222222333442 


Q ss_pred             eEEEEEeCCCcEEEEecCCCceeeeeecCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecc--
Q 014475          190 ATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSD--  267 (424)
Q Consensus       190 ~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~--  267 (424)
                      ...+..-.++.+.++|..+.+.+..+..+..-..++  +++..|+.+..++.|.++|..+..         .+..+..  
T Consensus        98 ~ly~ltw~~~~v~v~D~~t~~~~~ti~~~~eG~glt--~dg~~L~~SdGs~~i~~iDp~T~~---------v~~~I~V~~  166 (262)
T 3nol_A           98 KIVGLTWKNGLGFVWNIRNLRQVRSFNYDGEGWGLT--HNDQYLIMSDGTPVLRFLDPESLT---------PVRTITVTA  166 (262)
T ss_dssp             EEEEEESSSSEEEEEETTTCCEEEEEECSSCCCCEE--ECSSCEEECCSSSEEEEECTTTCS---------EEEEEECEE
T ss_pred             EEEEEEeeCCEEEEEECccCcEEEEEECCCCceEEe--cCCCEEEEECCCCeEEEEcCCCCe---------EEEEEEecc
Confidence            455555568899999999999999998655333444  567778777767889999998863         2333222  


Q ss_pred             cC---cCeEEEEecCCCEEEEeCCCCcEEEEeCCCCcEEEEEecc------------CCCeeEEEEEecCceeeecc
Q 014475          268 HS---KAVTCLAYSTGDLLISGSEDGMVRVWDPITHNIVRMFRLA------------KGPVNNILVVRRPLYLNLGS  329 (424)
Q Consensus       268 ~~---~~i~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~------------~~~v~~l~~s~~~~~l~~~~  329 (424)
                      ..   ..++.+.|..+..++..-.++.|.+.|.++++.+..+...            ....+.++++|+++.|.+.+
T Consensus       167 ~g~~~~~lNELe~~~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTG  243 (262)
T 3nol_A          167 HGEELPELNELEWVDGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTG  243 (262)
T ss_dssp             TTEECCCEEEEEEETTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEE
T ss_pred             CCccccccceeEEECCEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEEC
Confidence            11   3355677766766666667889999999999999988742            12458899999877766554

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.98  E-value=4e-07  Score=76.50  Aligned_cols=193  Identities=8%  Similarity=0.009  Sum_probs=129.3

Q ss_pred             CeeEEEECCCCCEEEEecC--CCcEEEEEccCcceeeeecccc-CCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchh
Q 014475           82 PIKPIAANSHGTYIAGGGQ--SGDIYMWEVASGRLLKKWHAHY-RAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEEC  158 (424)
Q Consensus        82 ~v~~~~~s~~~~~l~~~~~--dg~v~iwd~~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~  158 (424)
                      ....+.|+|++.+.++.+.  ++.|.++|+.+++.+..+.... .....+++.. +...++.-.++.+.++|..+.    
T Consensus        22 f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g-~~lyv~t~~~~~v~viD~~t~----   96 (266)
T 2iwa_A           22 FTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLLN-EKLYQVVWLKNIGFIYDRRTL----   96 (266)
T ss_dssp             CEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEET-TEEEEEETTCSEEEEEETTTT----
T ss_pred             CcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEeC-CEEEEEEecCCEEEEEECCCC----
Confidence            3689999998765555443  5789999999999888865322 2234566652 344455556889999999653    


Q ss_pred             cccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeeecC---c---ceeEEEECCCCCE
Q 014475          159 ESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFP---S---VIDAIALDPAEHV  232 (424)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~---~---~i~~~~~~~~~~~  232 (424)
                             ..+..+.....  ....+++++  +.++.+..++.|.++|..+.+.+..+...   .   .++.+.+. ++..
T Consensus        97 -------~v~~~i~~g~~--~g~glt~Dg--~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~l  164 (266)
T 2iwa_A           97 -------SNIKNFTHQMK--DGWGLATDG--KILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEV  164 (266)
T ss_dssp             -------EEEEEEECCSS--SCCEEEECS--SSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEE
T ss_pred             -------cEEEEEECCCC--CeEEEEECC--CEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEE
Confidence                   22333332111  123356676  55555667899999999999988888732   1   35677877 6655


Q ss_pred             EEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeeccc-------------CcCeEEEEecC--CCEEEEeCCCCcEEEEeC
Q 014475          233 FYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDH-------------SKAVTCLAYST--GDLLISGSEDGMVRVWDP  297 (424)
Q Consensus       233 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~-------------~~~i~~~~~~~--~~~l~t~~~dg~i~iwd~  297 (424)
                      ++....++.|.+.|..+++         .+..+.-.             ....+.++++|  +.+++++...+.|...++
T Consensus       165 yvn~~~~~~V~vID~~tg~---------V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l  235 (266)
T 2iwa_A          165 WANIWQTDCIARISAKDGT---------LLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKL  235 (266)
T ss_dssp             EEEETTSSEEEEEETTTCC---------EEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEE
T ss_pred             EEecCCCCeEEEEECCCCc---------EEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEE
Confidence            5555567899999999874         33333211             13568999999  457778888899988887


Q ss_pred             CCC
Q 014475          298 ITH  300 (424)
Q Consensus       298 ~~~  300 (424)
                      ...
T Consensus       236 ~~~  238 (266)
T 2iwa_A          236 HLV  238 (266)
T ss_dssp             EEC
T ss_pred             ecc
Confidence            654

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=98.93  E-value=3.7e-07  Score=86.66  Aligned_cols=242  Identities=11%  Similarity=0.030  Sum_probs=143.1

Q ss_pred             EEeecCCCCCceEEEeCCCCceEEEeeCCCCC-CCceEEecceeecCCCccccCCCC----ceeEEEEECCCCceeeeec
Q 014475            4 LIASSSVADTGIGCWDLESGAEQLRYKSCASP-PHGLACVGQRFLASSQLREQPSAS----SGSILYWSWSKPQVEVKSL   78 (424)
Q Consensus         4 ~lat~~~~dg~i~vwd~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~l~~~~~~----~g~i~vwd~~~~~~~~~~~   78 (424)
                      .|+.++ .|+.|..+|.++|+.+-+....... ...+.+..  ...++..++.....    +|.|..+|..+++...+..
T Consensus       117 ~v~v~~-~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P--~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~  193 (571)
T 2ad6_A          117 QIVKKQ-ANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAP--FVAKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAF  193 (571)
T ss_dssp             EEEEEC-TTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCC--EEETTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEE
T ss_pred             EEEEEe-CCCEEEEEECCCCCEEEEecCCCCCccceeccCC--EEECCEEEEEecCCccCCCCEEEEEECCCCcEEEEEc
Confidence            355666 7899999999999998776532210 00122111  12244443333320    3899999999998876544


Q ss_pred             CCCCe---------------------------------------eEEEECCCCCEEEEecCC----------------Cc
Q 014475           79 PAEPI---------------------------------------KPIAANSHGTYIAGGGQS----------------GD  103 (424)
Q Consensus        79 ~~~~v---------------------------------------~~~~~s~~~~~l~~~~~d----------------g~  103 (424)
                      ...+.                                       ..+++.++...+..+..+                +.
T Consensus       194 ~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~  273 (571)
T 2ad6_A          194 ATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMT  273 (571)
T ss_dssp             SSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTE
T ss_pred             cCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEE
Confidence            32211                                       235666766666665532                35


Q ss_pred             EEEEEccCcceeeeecc--cc--------CCeEEEEEccCCc---EEEEeeCCCcEEEEeCCcccchhcccccc------
Q 014475          104 IYMWEVASGRLLKKWHA--HY--------RAVTCLVFSEDGS---FLISGSEDGCVRIWSLLTVFEECESQRAS------  164 (424)
Q Consensus       104 v~iwd~~~~~~~~~~~~--~~--------~~i~~~~~~~~~~---~l~s~~~dg~i~iwd~~~~~~~~~~~~~~------  164 (424)
                      |..+|.++|+.+..++.  |.        .++ -+....+|+   .++.++.+|.+.++|..++..........      
T Consensus       274 v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~-l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~  352 (571)
T 2ad6_A          274 IWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMV-LTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFK  352 (571)
T ss_dssp             EEEEETTTCCEEEEEESSTTCSSCCCCCCCCE-EEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEE
T ss_pred             EEEEecCCCcEEEEecCCCCcccccccCCCCE-EEecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCccccc
Confidence            99999999998877653  21        222 122224674   57788899999999998865432221110      


Q ss_pred             ------cceEE--------------eecCCc--CceeEEEEEEcCceeEEEEEe--------------------------
Q 014475          165 ------HLYLH--------------SFTGHT--LRITDIVIGYGGVSATIVSAS--------------------------  196 (424)
Q Consensus       165 ------~~~~~--------------~~~~~~--~~i~~~~~~~~~~~~~l~~~~--------------------------  196 (424)
                            ..++.              ...+..  ..-..++++|+.  ..++..+                          
T Consensus       353 ~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~--g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~  430 (571)
T 2ad6_A          353 KVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPES--RTLYAGLNHICMDWEPFMLPYRAGQFFVGATLA  430 (571)
T ss_dssp             EECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTT--TEEEEEEECEEEEEEECCCCCCTTSCCCCEEEE
T ss_pred             cccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCC--CEEEEEchhccccccccccccccCCccccccce
Confidence                  00000              000000  000234555554  3333332                          


Q ss_pred             -----------CCCcEEEEecCCCceeeeeecCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCC
Q 014475          197 -----------EDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAES  251 (424)
Q Consensus       197 -----------~d~~v~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  251 (424)
                                 .+|.|..||+.+++.+..+.....+....+...+..+++++.||.++.+|.++++
T Consensus       431 ~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~  496 (571)
T 2ad6_A          431 MYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKFAAWGGTLYTKGGLVWYATLDGYLKALDNKDGK  496 (571)
T ss_dssp             EEECTTSTTSCCCEEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCC
T ss_pred             eccCccccCCCCCCeEEEEECCCCCEEEEecCCCCccceeEEECCCEEEEEcCCCeEEEEECCCCC
Confidence                       3578999999999998888755444333333356778889999999999999874

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=98.93  E-value=8.3e-06  Score=71.37  Aligned_cols=229  Identities=11%  Similarity=-0.043  Sum_probs=142.2

Q ss_pred             eeEEEEECCCCceeeeecCCCCeeEEEECCCCC-EEEEecCCCcEEEEEccC----cceeeeeccccCCeEEEEEcc-CC
Q 014475           61 GSILYWSWSKPQVEVKSLPAEPIKPIAANSHGT-YIAGGGQSGDIYMWEVAS----GRLLKKWHAHYRAVTCLVFSE-DG  134 (424)
Q Consensus        61 g~i~vwd~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~v~iwd~~~----~~~~~~~~~~~~~i~~~~~~~-~~  134 (424)
                      ..|+..|+++.+..........+..++|++.+. .+++-...+.|..+++..    ......+.........+++.+ ++
T Consensus        10 ~~I~~i~~~~~~~~~~~~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~   89 (316)
T 1ijq_A           10 HEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHS   89 (316)
T ss_dssp             SSEEEEETTSCCCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTT
T ss_pred             CeEEEEECCCcceEehhcCCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCC
Confidence            578888988776554444566789999998654 445555668899999875    222222322334567899986 44


Q ss_pred             cEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCC-CcEEEEecCCCceee
Q 014475          135 SFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASED-RTCKVWSLLKGRLLR  213 (424)
Q Consensus       135 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d-~~v~iwd~~~~~~~~  213 (424)
                      +.+++-...+.|.+.++....           ..............+++.|.+. ..+++.... +.|...++.. ....
T Consensus        90 ~ly~~d~~~~~I~~~~~~g~~-----------~~~~~~~~~~~P~~iavdp~~g-~ly~~d~~~~~~I~~~~~dG-~~~~  156 (316)
T 1ijq_A           90 NIYWTDSVLGTVSVADTKGVK-----------RKTLFRENGSKPRAIVVDPVHG-FMYWTDWGTPAKIKKGGLNG-VDIY  156 (316)
T ss_dssp             EEEEEETTTTEEEEEETTSSS-----------EEEEEECTTCCEEEEEEETTTT-EEEEEECSSSCEEEEEETTS-CCEE
T ss_pred             eEEEEECCCCEEEEEeCCCCc-----------eEEEEECCCCCcceEEeCCCCC-EEEEEccCCCCeEEEEcCCC-CCeE
Confidence            555555667889999985311           1111122234567889987552 444444333 6788888753 3333


Q ss_pred             eee--cCcceeEEEECCCCCEEEEEe-CCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecCCCEEEEeCCCC
Q 014475          214 NIV--FPSVIDAIALDPAEHVFYAGS-RDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTGDLLISGSEDG  290 (424)
Q Consensus       214 ~~~--~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~t~~~dg  290 (424)
                      .+.  .-...+.++++|++..|+.+. ..+.|..+|++....       +.+............+++..+.++++-...+
T Consensus       157 ~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~-------~~~~~~~~~~~~P~giav~~~~ly~~d~~~~  229 (316)
T 1ijq_A          157 SLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR-------KTILEDEKRLAHPFSLAVFEDKVFWTDIINE  229 (316)
T ss_dssp             EEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-------EEEEECTTTTSSEEEEEEETTEEEEEETTTT
T ss_pred             EEEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCce-------EEEeecCCccCCcEEEEEECCEEEEEECCCC
Confidence            332  234678999999777666654 557899999875321       2222211223345677776577777777788


Q ss_pred             cEEEEeCCCCcEEEEEecc
Q 014475          291 MVRVWDPITHNIVRMFRLA  309 (424)
Q Consensus       291 ~i~iwd~~~~~~~~~~~~~  309 (424)
                      .|..++..+++.+..+...
T Consensus       230 ~V~~~~~~~g~~~~~i~~~  248 (316)
T 1ijq_A          230 AIFSANRLTGSDVNLLAEN  248 (316)
T ss_dssp             EEEEEETTTCCCCEEEECS
T ss_pred             eEEEEeCCCCcceEEEecC
Confidence            9999998888777766543

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.91  E-value=6.2e-06  Score=73.21  Aligned_cols=238  Identities=8%  Similarity=-0.090  Sum_probs=150.5

Q ss_pred             eeEEEEECCCCceeeeecCCCCeeEEEECCCCCEE-EEecCCCcEEEEEccCcceeeeeccccCCeEEEEEccC-CcEEE
Q 014475           61 GSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYI-AGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSED-GSFLI  138 (424)
Q Consensus        61 g~i~vwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~  138 (424)
                      ..|+..+.+.............+..++|++....| ++-...+.|..+++..+.....+.........+++.+. +++++
T Consensus        53 ~~I~~i~~~g~~~~~~~~~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~ly~  132 (349)
T 3v64_C           53 IDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYW  132 (349)
T ss_dssp             SCEEEECTTSCCEEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEE
T ss_pred             cceEEEeCCCCeeEEeecCCCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCCCCccEEEEecCCCeEEE
Confidence            56888888776655544455668999999755544 45456788999998766544433333345678999874 55556


Q ss_pred             EeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCC-CcEEEEecCCCceeeeee-
Q 014475          139 SGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASED-RTCKVWSLLKGRLLRNIV-  216 (424)
Q Consensus       139 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d-~~v~iwd~~~~~~~~~~~-  216 (424)
                      +-...+.|.+.++....           ........-.....+++.|.+. .++++-... +.|...++.......... 
T Consensus       133 ~d~~~~~I~~~~~dG~~-----------~~~l~~~~l~~P~~iavdp~~g-~ly~td~~~~~~I~r~~~dG~~~~~~~~~  200 (349)
T 3v64_C          133 TDSGTSRIEVANLDGAH-----------RKVLLWQSLEKPRAIALHPMEG-TIYWTDWGNTPRIEASSMDGSGRRIIADT  200 (349)
T ss_dssp             EETTTTEEEEEETTSCS-----------CEEEECTTCSCEEEEEEETTTT-EEEEEECSSSCEEEEEETTSCSCEESCCS
T ss_pred             EcCCCCeEEEEcCCCCc-----------eEEEEeCCCCCcceEEEecCcC-eEEEeccCCCCEEEEEeCCCCCcEEEEEC
Confidence            65667789999985411           1111222334568899998552 455555455 788888876433222222 


Q ss_pred             cCcceeEEEECCCCCEEEEEe-CCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecCCCEEEEeCCCCcEEEE
Q 014475          217 FPSVIDAIALDPAEHVFYAGS-RDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTGDLLISGSEDGMVRVW  295 (424)
Q Consensus       217 ~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~t~~~dg~i~iw  295 (424)
                      .-...+.++++|++..|+.+. ..+.|..++++....         .............+++..+.++++-...+.|..+
T Consensus       201 ~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~---------~~~~~~~~~~P~giav~~~~ly~td~~~~~V~~~  271 (349)
T 3v64_C          201 HLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHR---------KAVISQGLPHPFAITVFEDSLYWTDWHTKSINSA  271 (349)
T ss_dssp             SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC---------EEEECSSCSSEEEEEEETTEEEEEETTTTEEEEE
T ss_pred             CCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCce---------EEEEeCCCCCceEEEEECCEEEEecCCCCeEEEE
Confidence            234578999998766666554 567899999876421         1112222345677777557777777778889999


Q ss_pred             eCCCCcEEEEEeccCCCeeEEEEE
Q 014475          296 DPITHNIVRMFRLAKGPVNNILVV  319 (424)
Q Consensus       296 d~~~~~~~~~~~~~~~~v~~l~~s  319 (424)
                      +..+|+.+..+.........+++.
T Consensus       272 ~~~~G~~~~~i~~~~~~p~gi~v~  295 (349)
T 3v64_C          272 NKFTGKNQEIIRNKLHFPMDIHTL  295 (349)
T ss_dssp             ETTTCCSCEEEECSCSCCCCEEEE
T ss_pred             EccCCCccEEeccCCCCCceEEEE
Confidence            977887777776444444555554

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.91  E-value=2.6e-07  Score=76.72  Aligned_cols=180  Identities=12%  Similarity=0.117  Sum_probs=120.4

Q ss_pred             EEecceeecCCCccccCCCC-ceeEEEEECCCCceeeeecCCCCeeEEEECCCCCEEEE-ecCCCcEEEEEccCcceeee
Q 014475           40 ACVGQRFLASSQLREQPSAS-SGSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAG-GGQSGDIYMWEVASGRLLKK  117 (424)
Q Consensus        40 ~~~~~~~~~~~~~l~~~~~~-~g~i~vwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~-~~~dg~v~iwd~~~~~~~~~  117 (424)
                      ..+.  |+ ++.+..+++.+ ...|+++|.++++.................++++.|.. .-.++.+.+||.++.+.+.+
T Consensus        46 qGL~--~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~~~~t  122 (262)
T 3nol_A           46 EGFF--YR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDWKDKIVGLTWKNGLGFVWNIRNLRQVRS  122 (262)
T ss_dssp             EEEE--EE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEEEETTTCCEEEE
T ss_pred             ceEE--EE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEeCCEEEEEEeeCCEEEEEECccCcEEEE
Confidence            4455  77 66666666654 24999999999988766554455544333334444444 44578999999999999988


Q ss_pred             eccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecC--Cc---CceeEEEEEEcCceeEE
Q 014475          118 WHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTG--HT---LRITDIVIGYGGVSATI  192 (424)
Q Consensus       118 ~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~--~~---~~i~~~~~~~~~~~~~l  192 (424)
                      +.... .-..++  ++++.|+.+..++.|.++|..+..           .+..+.-  ..   ..++.+.+. ++  ...
T Consensus       123 i~~~~-eG~glt--~dg~~L~~SdGs~~i~~iDp~T~~-----------v~~~I~V~~~g~~~~~lNELe~~-~G--~ly  185 (262)
T 3nol_A          123 FNYDG-EGWGLT--HNDQYLIMSDGTPVLRFLDPESLT-----------PVRTITVTAHGEELPELNELEWV-DG--EIF  185 (262)
T ss_dssp             EECSS-CCCCEE--ECSSCEEECCSSSEEEEECTTTCS-----------EEEEEECEETTEECCCEEEEEEE-TT--EEE
T ss_pred             EECCC-CceEEe--cCCCEEEEECCCCeEEEEcCCCCe-----------EEEEEEeccCCccccccceeEEE-CC--EEE
Confidence            86432 223344  567777766667889999997632           2222211  11   334456665 54  666


Q ss_pred             EEEeCCCcEEEEecCCCceeeeeecC-------------cceeEEEECCCCCEEEEEeCC
Q 014475          193 VSASEDRTCKVWSLLKGRLLRNIVFP-------------SVIDAIALDPAEHVFYAGSRD  239 (424)
Q Consensus       193 ~~~~~d~~v~iwd~~~~~~~~~~~~~-------------~~i~~~~~~~~~~~l~~~~~d  239 (424)
                      +..-.++.|.+.|.++++.+..+...             ...+.++++|+++.|++.+..
T Consensus       186 an~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~  245 (262)
T 3nol_A          186 ANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKL  245 (262)
T ss_dssp             EEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETT
T ss_pred             EEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCC
Confidence            65557889999999999999888742             345899999988888777654

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=98.90  E-value=8.4e-06  Score=80.93  Aligned_cols=302  Identities=10%  Similarity=0.051  Sum_probs=178.5

Q ss_pred             CCCceEEEeCCCCceEEEeeCC-----CCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCceeeee--------
Q 014475           11 ADTGIGCWDLESGAEQLRYKSC-----ASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKS--------   77 (424)
Q Consensus        11 ~dg~i~vwd~~~~~~~~~~~~~-----~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~~--------   77 (424)
                      .++.|..||..+++.. .+...     .-....|.++.  ..+++.+.+.+ .  +.+.+||..+.+.....        
T Consensus       181 ~~~Gl~~~~~~~~~~~-~~~~~~~~~~~l~~~~i~~i~--~d~~g~lwigt-~--~Gl~~~d~~~~~~~~~~~~~~~~~~  254 (781)
T 3v9f_A          181 VEGGLSILSLNDKSVK-HFVHDPQNPNSLPGNDVRCIY--KDTNGNIWIGT-S--KGLALFNANTETFTNFHNNPGNIHG  254 (781)
T ss_dssp             TTTEEEEEETTTTEEE-EECC--------CCSSEEEEE--ECTTCCEEEEE-T--TEEEEEETTTTEEEC----------
T ss_pred             cCCCeEEEcCCCCceE-eeecCCCCcccCCCCceeEEE--EcCCCCEEEEe-C--CcHheECCCCCcEEEEEcCCCcccc
Confidence            3445888898766543 22211     11234577766  66777665543 3  35888998766543221        


Q ss_pred             cCCCCeeEEEECCCCCEEEEecCCCcEEEEEccCcceeeeec--------------cccCCeEEEEEccCCcEEEEeeCC
Q 014475           78 LPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWH--------------AHYRAVTCLVFSEDGSFLISGSED  143 (424)
Q Consensus        78 ~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~--------------~~~~~i~~~~~~~~~~~l~s~~~d  143 (424)
                      .....|.++...++|.+.+ |+..+-|.++|..++.......              .....|.++...+++. |-.|+.+
T Consensus       255 l~~~~i~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~-lWigt~~  332 (781)
T 3v9f_A          255 ALSSYIFSIKQLKDNKLWI-ATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNN-IWIGTWG  332 (781)
T ss_dssp             -CCCCEEEEEECTTSEEEE-EESSSCEEEEETTCC---------CEEECBCSSTTSBSSSCEEEEEECSSCC-EEEEEBS
T ss_pred             ccCceEEEEEECCCCCEEE-EeCCCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCC-EEEEecC
Confidence            2346799999988887554 5554558889987664322111              2346799999988876 5566767


Q ss_pred             CcEEEEeCCcccchhcccccccceEE-------eecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeee-
Q 014475          144 GCVRIWSLLTVFEECESQRASHLYLH-------SFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNI-  215 (424)
Q Consensus       144 g~i~iwd~~~~~~~~~~~~~~~~~~~-------~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~-  215 (424)
                      +-|..++..+..         .....       ........|.++....++   .|..|+.++-|..||..+++..... 
T Consensus       333 ~Gl~~~~~~~~~---------~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g---~lWigt~~~Gl~~~~~~~~~~~~~~~  400 (781)
T 3v9f_A          333 GGINFISNAPPT---------FHTWSYSPTQMNESSLSNKVVSSVCDDGQG---KLWIGTDGGGINVFENGKRVAIYNKE  400 (781)
T ss_dssp             SCEEEECSSCCS---------CEEEC----CCCSSCCSSSCEEEEEECTTS---CEEEEEBSSCEEEEETTEEEEECC--
T ss_pred             CeEEEeCCCCCc---------ceeeccCccccccCCCCCcceEEEEEcCCC---CEEEEeCCCcEEEEECCCCeEEEccC
Confidence            778889875421         11110       001123467777765554   4667776777999998765432211 


Q ss_pred             --e-cCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecCCCEEEEeCCCCcE
Q 014475          216 --V-FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTGDLLISGSEDGMV  292 (424)
Q Consensus       216 --~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~t~~~dg~i  292 (424)
                        . ....|.++...+++. |.+|+.++.+..++..++..       ............|.++...+...|..|+. +-|
T Consensus       401 ~~~~~~~~v~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~-------~~~~~~~~~~~~v~~i~~d~~g~lwigt~-~Gl  471 (781)
T 3v9f_A          401 NRELLSNSVLCSLKDSEGN-LWFGTYLGNISYYNTRLKKF-------QIIELEKNELLDVRVFYEDKNKKIWIGTH-AGV  471 (781)
T ss_dssp             ---CCCSBEEEEEECTTSC-EEEEETTEEEEEECSSSCEE-------EECCSTTTCCCCEEEEEECTTSEEEEEET-TEE
T ss_pred             CCCCCCcceEEEEECCCCC-EEEEeccCCEEEEcCCCCcE-------EEeccCCCCCCeEEEEEECCCCCEEEEEC-Cce
Confidence              1 235688888887776 55577767788888776421       11100012346788988887444555555 458


Q ss_pred             EEEeCCCCcEEEEEecc-----CCCeeEEEEEecCceeeeccCCCceeeccCCCC
Q 014475          293 RVWDPITHNIVRMFRLA-----KGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGS  342 (424)
Q Consensus       293 ~iwd~~~~~~~~~~~~~-----~~~v~~l~~s~~~~~l~~~~~d~~i~iw~~~~~  342 (424)
                      ..||..+++........     ...|.++...++|.+.+.. .++-+..++..+.
T Consensus       472 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt-~~~Gl~~~~~~~~  525 (781)
T 3v9f_A          472 FVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGT-FGGGVGIYTPDMQ  525 (781)
T ss_dssp             EEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEE-SSSCEEEECTTCC
T ss_pred             EEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEEE-cCCCEEEEeCCCC
Confidence            89998876644333222     3578899888888765544 4334666776544

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=98.90  E-value=6.7e-06  Score=81.67  Aligned_cols=301  Identities=12%  Similarity=0.070  Sum_probs=177.8

Q ss_pred             ceEEEeCCCCceEEEeeCC----CCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCceeee-------------
Q 014475           14 GIGCWDLESGAEQLRYKSC----ASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVK-------------   76 (424)
Q Consensus        14 ~i~vwd~~~~~~~~~~~~~----~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~-------------   76 (424)
                      .+.+||..+++...-....    ......|.++.  ..++|.+.+.. .. +-|.+++..+......             
T Consensus       231 Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~--~d~~g~lWigt-~~-~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~  306 (781)
T 3v9f_A          231 GLALFNANTETFTNFHNNPGNIHGALSSYIFSIK--QLKDNKLWIAT-EL-NGIMILDLQQNQFLLPEQIRFEFIREGDN  306 (781)
T ss_dssp             EEEEEETTTTEEEC-----------CCCCEEEEE--ECTTSEEEEEE-SS-SCEEEEETTCC---------CEEECBCSS
T ss_pred             cHheECCCCCcEEEEEcCCCccccccCceEEEEE--ECCCCCEEEEe-CC-CCeEEECCCCCeeeeeeccccccccCCCC
Confidence            5888887766543211111    11235577776  66777765544 32 5678888876553211             


Q ss_pred             --ecCCCCeeEEEECCCCCEEEEecCCCcEEEEEccCcceeeeec---------cccCCeEEEEEccCCcEEEEeeCCCc
Q 014475           77 --SLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWH---------AHYRAVTCLVFSEDGSFLISGSEDGC  145 (424)
Q Consensus        77 --~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~---------~~~~~i~~~~~~~~~~~l~s~~~dg~  145 (424)
                        ......|.++...++|. |..|+.++-|..++..++.......         .....|.++...+++. |..|+.++-
T Consensus       307 ~~~l~~~~v~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~-lWigt~~~G  384 (781)
T 3v9f_A          307 NYSLSNASARYIFQDSFNN-IWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGK-LWIGTDGGG  384 (781)
T ss_dssp             TTSBSSSCEEEEEECSSCC-EEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTSC-EEEEEBSSC
T ss_pred             CCCCCCCeEEEEEEeCCCC-EEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcCCCC-EEEEeCCCc
Confidence              12346799999999887 4556666678999876654322111         1235699999888776 555665667


Q ss_pred             EEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeee---cCccee
Q 014475          146 VRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV---FPSVID  222 (424)
Q Consensus       146 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~---~~~~i~  222 (424)
                      |..||..+.....        ...........|.++...+++   .|..|+.++-+..+|..+++......   ....|.
T Consensus       385 l~~~~~~~~~~~~--------~~~~~~~~~~~v~~i~~d~~g---~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~  453 (781)
T 3v9f_A          385 INVFENGKRVAIY--------NKENRELLSNSVLCSLKDSEG---NLWFGTYLGNISYYNTRLKKFQIIELEKNELLDVR  453 (781)
T ss_dssp             EEEEETTEEEEEC--------C-----CCCSBEEEEEECTTS---CEEEEETTEEEEEECSSSCEEEECCSTTTCCCCEE
T ss_pred             EEEEECCCCeEEE--------ccCCCCCCCcceEEEEECCCC---CEEEEeccCCEEEEcCCCCcEEEeccCCCCCCeEE
Confidence            8899985421100        000001234567777765554   46667777779999987765433221   235788


Q ss_pred             EEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeec---ccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCC
Q 014475          223 AIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLS---DHSKAVTCLAYST-GDLLISGSEDGMVRVWDPI  298 (424)
Q Consensus       223 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~---~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~  298 (424)
                      ++...+++. +.+|+. +.+..+|..+...       .......   .....|.++...+ +.+. .|+.++-|..||..
T Consensus       454 ~i~~d~~g~-lwigt~-~Gl~~~~~~~~~~-------~~~~~~~~~~~~~~~i~~i~~d~~g~lW-igt~~~Gl~~~~~~  523 (781)
T 3v9f_A          454 VFYEDKNKK-IWIGTH-AGVFVIDLASKKV-------IHHYDTSNSQLLENFVRSIAQDSEGRFW-IGTFGGGVGIYTPD  523 (781)
T ss_dssp             EEEECTTSE-EEEEET-TEEEEEESSSSSC-------CEEECTTTSSCSCSCEEEEEECTTCCEE-EEESSSCEEEECTT
T ss_pred             EEEECCCCC-EEEEEC-CceEEEeCCCCeE-------EecccCcccccccceeEEEEEcCCCCEE-EEEcCCCEEEEeCC
Confidence            888888776 555555 5688999876531       1111111   1136788998888 5544 45443347789987


Q ss_pred             CCcEEEEEec----cCCCeeEEEEEecCceeeeccCCCceeeccCCCCC
Q 014475          299 THNIVRMFRL----AKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGSQ  343 (424)
Q Consensus       299 ~~~~~~~~~~----~~~~v~~l~~s~~~~~l~~~~~d~~i~iw~~~~~~  343 (424)
                      +++. ..+..    ....|.++...++|...++.. +|.+..|+..+.+
T Consensus       524 ~~~~-~~~~~~~~l~~~~i~~i~~d~~g~lWi~T~-~Glv~~~d~~~~~  570 (781)
T 3v9f_A          524 MQLV-RKFNQYEGFCSNTINQIYRSSKGQMWLATG-EGLVCFPSARNFD  570 (781)
T ss_dssp             CCEE-EEECTTTTCSCSCEEEEEECTTSCEEEEET-TEEEEESCTTTCC
T ss_pred             CCeE-EEccCCCCCCCCeeEEEEECCCCCEEEEEC-CCceEEECCCCCc
Confidence            6543 33331    234688888888887665544 6665888876554

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.89  E-value=2.9e-06  Score=74.60  Aligned_cols=227  Identities=9%  Similarity=0.002  Sum_probs=136.5

Q ss_pred             eecCCCccccCCCCceeEEEEECCCCceeeeec--------------------CCCCeeEEEECC-CCCEEEEecCCCcE
Q 014475           46 FLASSQLREQPSASSGSILYWSWSKPQVEVKSL--------------------PAEPIKPIAANS-HGTYIAGGGQSGDI  104 (424)
Q Consensus        46 ~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~~~--------------------~~~~v~~~~~s~-~~~~l~~~~~dg~v  104 (424)
                      +.++++++.++..+ +.|..|+..+++......                    ....+..+++.+ +++++++ ...+.|
T Consensus        26 ~d~~g~~l~v~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~-d~~~~i  103 (322)
T 2fp8_A           26 FDSTNKGFYTSVQD-GRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIV-DCYYHL  103 (322)
T ss_dssp             CCTTCSSEEEECTT-SEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEE-ETTTEE
T ss_pred             EcCCCCEEEEEcCC-CeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEE-ECCCCE
Confidence            88888867776665 899999987665432211                    013578999998 6665554 334458


Q ss_pred             EEEEccCcceeeee---cc-ccCCeEEEEEcc-CCcEEEEeeC-----------------CCcEEEEeCCcccchhcccc
Q 014475          105 YMWEVASGRLLKKW---HA-HYRAVTCLVFSE-DGSFLISGSE-----------------DGCVRIWSLLTVFEECESQR  162 (424)
Q Consensus       105 ~iwd~~~~~~~~~~---~~-~~~~i~~~~~~~-~~~~l~s~~~-----------------dg~i~iwd~~~~~~~~~~~~  162 (424)
                      ..+|..++......   .+ .......+++.+ +|+..++-..                 ++.|..+|..++.       
T Consensus       104 ~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~-------  176 (322)
T 2fp8_A          104 SVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKE-------  176 (322)
T ss_dssp             EEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTE-------
T ss_pred             EEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCE-------
Confidence            88887655422111   11 123578899999 8887666432                 3678888875421       


Q ss_pred             cccceEEeecCCcCceeEEEEEEcCceeEEE-EEeCCCcEEEEecCCCc--eeeee-ecCcceeEEEECCCCCEEEEEeC
Q 014475          163 ASHLYLHSFTGHTLRITDIVIGYGGVSATIV-SASEDRTCKVWSLLKGR--LLRNI-VFPSVIDAIALDPAEHVFYAGSR  238 (424)
Q Consensus       163 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~-~~~~d~~v~iwd~~~~~--~~~~~-~~~~~i~~~~~~~~~~~l~~~~~  238 (424)
                           ...+.........+++++++  +.|+ +-+..+.|..|++....  ....+ ..+. ...++++++|+++++...
T Consensus       177 -----~~~~~~~~~~p~gia~~~dg--~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~G~l~va~~~  248 (322)
T 2fp8_A          177 -----TTLLLKELHVPGGAEVSADS--SFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGHFWVSSSE  248 (322)
T ss_dssp             -----EEEEEEEESCCCEEEECTTS--SEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECTTSCEEEEEEE
T ss_pred             -----EEEeccCCccCcceEECCCC--CEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECCCCCEEEEecC
Confidence                 11111111234568898887  5554 44566889999987531  11112 2334 788999999986666544


Q ss_pred             ----------CCcEEEEEcCCCCCCCCCcCceeeeeeccc----CcCeEEEEecCCCEEEEeCCCCcEEEEeCCC
Q 014475          239 ----------DGSIYIAALNAESPSTSSYGMHIIGSLSDH----SKAVTCLAYSTGDLLISGSEDGMVRVWDPIT  299 (424)
Q Consensus       239 ----------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~----~~~i~~~~~~~~~~l~t~~~dg~i~iwd~~~  299 (424)
                                .+.|..+|...          +.+..+...    ...++.+++..+.++++...++.|..+++..
T Consensus       249 ~~~~~~~~~~~~~v~~~d~~G----------~~~~~~~~~~g~~~~~~~~~~~~~g~L~v~~~~~~~i~~~~~~~  313 (322)
T 2fp8_A          249 ELDGNMHGRVDPKGIKFDEFG----------NILEVIPLPPPFAGEHFEQIQEHDGLLYIGTLFHGSVGILVYDK  313 (322)
T ss_dssp             ETTSSTTSCEEEEEEEECTTS----------CEEEEEECCTTTTTSCCCEEEEETTEEEEECSSCSEEEEEEC--
T ss_pred             cccccccCCCccEEEEECCCC----------CEEEEEECCCCCccccceEEEEeCCEEEEeecCCCceEEEeccc
Confidence                      35677777643          223333222    2346666664466666666788899998763

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=98.88  E-value=1e-06  Score=83.71  Aligned_cols=288  Identities=10%  Similarity=-0.004  Sum_probs=161.2

Q ss_pred             ccccCCC-CceeEEEEEC-CCCceeeeecCCCC------------eeEEEECCCCCE----EEEecCCCcEEEEEccCcc
Q 014475           52 LREQPSA-SSGSILYWSW-SKPQVEVKSLPAEP------------IKPIAANSHGTY----IAGGGQSGDIYMWEVASGR  113 (424)
Q Consensus        52 ~l~~~~~-~~g~i~vwd~-~~~~~~~~~~~~~~------------v~~~~~s~~~~~----l~~~~~dg~v~iwd~~~~~  113 (424)
                      .+.+++. + +.|.-+|. .+++...+......            ...++++|.+..    +++++.|+.|..+|.++|+
T Consensus        64 ~vyv~~~~~-~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG~  142 (599)
T 1w6s_A           64 KMYIHTSFP-NNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETGE  142 (599)
T ss_dssp             EEEEECSTT-TCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTCC
T ss_pred             EEEEEeCCC-CEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECCCCC
Confidence            3444444 4 88999999 88888776554321            123455443333    7778889999999999999


Q ss_pred             eeeeecccc----CCeEE-EEEccCCcEEEEee------CCCcEEEEeCCcccchhcccccccceE--------------
Q 014475          114 LLKKWHAHY----RAVTC-LVFSEDGSFLISGS------EDGCVRIWSLLTVFEECESQRASHLYL--------------  168 (424)
Q Consensus       114 ~~~~~~~~~----~~i~~-~~~~~~~~~l~s~~------~dg~i~iwd~~~~~~~~~~~~~~~~~~--------------  168 (424)
                      .+.......    ..+.+ -... ++ .+++++      .+|.|+.+|.+++...-..........              
T Consensus       143 ~~W~~~~~~~~~~~~~~ssP~v~-~g-~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~~  220 (599)
T 1w6s_A          143 TVWKVENSDIKVGSTLTIAPYVV-KD-KVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHY  220 (599)
T ss_dssp             EEEEEECCCGGGTCBCCSCCEEE-TT-EEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGG
T ss_pred             EEEeecCCCCCccceeecCCEEE-CC-EEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCccccccccccccccccc
Confidence            887654221    01111 1111 44 455544      378999999988654322211110000              


Q ss_pred             -------Ee-----ecCCcCce-eEEEEEEcCceeEEEEEeCC----------------CcEEEEecCCCceeeeeecCc
Q 014475          169 -------HS-----FTGHTLRI-TDIVIGYGGVSATIVSASED----------------RTCKVWSLLKGRLLRNIVFPS  219 (424)
Q Consensus       169 -------~~-----~~~~~~~i-~~~~~~~~~~~~~l~~~~~d----------------~~v~iwd~~~~~~~~~~~~~~  219 (424)
                             ..     +..-...+ ..+++.+..  ..++.++.+                +.|.-+|.++++.+..++...
T Consensus       221 g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~--g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~  298 (599)
T 1w6s_A          221 GQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGT--NLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTP  298 (599)
T ss_dssp             CCTTHHHHTSSTTGGGGCCCCCCSCCEEETTT--TEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESST
T ss_pred             cccccccccCCCcceecCCCccccceeEeCCC--CEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCC
Confidence                   00     00000001 123444444  566666544                379999999999988877321


Q ss_pred             ----------ceeEEEEC-CCC---CEEEEEeCCCcEEEEEcCCCCCCCCCcC--------------ceeeee-------
Q 014475          220 ----------VIDAIALD-PAE---HVFYAGSRDGSIYIAALNAESPSTSSYG--------------MHIIGS-------  264 (424)
Q Consensus       220 ----------~i~~~~~~-~~~---~~l~~~~~dg~i~i~d~~~~~~~~~~~~--------------~~~~~~-------  264 (424)
                                ...-+... .+|   ..++.++.+|.++++|..+++.......              ..++..       
T Consensus       299 ~d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~  378 (599)
T 1w6s_A          299 HDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGTRM  378 (599)
T ss_dssp             TCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCCEEECGGGCCCT
T ss_pred             CccccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEEECCCCCEeecccccCCcccccccccCCCceeeccccCCCC
Confidence                      11112222 456   5677789999999999988754211000              000000       


Q ss_pred             -------eccc--CcCeEEEEecC-CCEEEEe---------------------------------C------CCCcEEEE
Q 014475          265 -------LSDH--SKAVTCLAYST-GDLLISG---------------------------------S------EDGMVRVW  295 (424)
Q Consensus       265 -------~~~~--~~~i~~~~~~~-~~~l~t~---------------------------------~------~dg~i~iw  295 (424)
                             ..+.  ...-..++++| ..++++.                                 +      .+|.|.-|
T Consensus       379 ~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G~l~A~  458 (599)
T 1w6s_A          379 DHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQIKAY  458 (599)
T ss_dssp             TCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEEEEEE
T ss_pred             CCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCCcceecccceeccCCcCCcccCCCcCeEEEE
Confidence                   0000  00001234444 3332221                                 1      45789999


Q ss_pred             eCCCCcEEEEEeccCCCeeEEEEEecCceeeeccCCCceeeccCCCCCCC
Q 014475          296 DPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGSQLP  345 (424)
Q Consensus       296 d~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~d~~i~iw~~~~~~~~  345 (424)
                      |+.+++.+-+... ..+...-.....+..++.++.|+.++.+|..+++..
T Consensus       459 D~~tG~~~W~~~~-~~~~~~g~~~tagg~vf~gt~dg~l~A~D~~tG~~l  507 (599)
T 1w6s_A          459 NAITGDYKWEKME-RFAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLL  507 (599)
T ss_dssp             CTTTCCEEEEEEE-SSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred             ECCCCCEEeEecC-CCCccCcceEecCCEEEEECCCCeEEEEECCCCCEE
Confidence            9999999887763 233333234446667777999999999999988764

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.88  E-value=6.3e-07  Score=74.35  Aligned_cols=189  Identities=15%  Similarity=0.158  Sum_probs=127.2

Q ss_pred             ceeeeeccccC--CeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCcee
Q 014475          113 RLLKKWHAHYR--AVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSA  190 (424)
Q Consensus       113 ~~~~~~~~~~~--~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  190 (424)
                      +.+.++ .|..  ....+.|+ ++.++++.+.+|.|+.+|++++...         ... +..   .....-....++ .
T Consensus        44 ~Vv~~~-phd~~~ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~---------~~~-l~~---~~FgeGit~~g~-~  107 (268)
T 3nok_A           44 HIIREY-PHATNAFTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPV---------WME-RLG---NIFAEGLASDGE-R  107 (268)
T ss_dssp             EEEEEE-ECCTTCCEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCS---------EEE-ECT---TCCEEEEEECSS-C
T ss_pred             EEEEEE-cCCCccccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEE---------eEE-CCC---CcceeEEEEeCC-E
Confidence            344555 3443  34788887 4677788888999999999874321         111 222   222222333442 4


Q ss_pred             EEEEEeCCCcEEEEecCCCceeeeeecCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecc--c
Q 014475          191 TIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSD--H  268 (424)
Q Consensus       191 ~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~--~  268 (424)
                      ..+..-.++.+.+||..+.+.+..+..+..-..++  ++++.|+.+..++.|+++|..+.+         .+..+.-  +
T Consensus       108 Ly~ltw~~~~v~V~D~~Tl~~~~ti~~~~eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~---------v~~~I~V~~~  176 (268)
T 3nok_A          108 LYQLTWTEGLLFTWSGMPPQRERTTRYSGEGWGLC--YWNGKLVRSDGGTMLTFHEPDGFA---------LVGAVQVKLR  176 (268)
T ss_dssp             EEEEESSSCEEEEEETTTTEEEEEEECSSCCCCEE--EETTEEEEECSSSEEEEECTTTCC---------EEEEEECEET
T ss_pred             EEEEEccCCEEEEEECCcCcEEEEEeCCCceeEEe--cCCCEEEEECCCCEEEEEcCCCCe---------EEEEEEeCCC
Confidence            55556678999999999999999998654444444  578888888888899999988863         2333221  2


Q ss_pred             C---cCeEEEEecCCCEEEEeCCCCcEEEEeCCCCcEEEEEecc-------------CCCeeEEEEEecCceeeec
Q 014475          269 S---KAVTCLAYSTGDLLISGSEDGMVRVWDPITHNIVRMFRLA-------------KGPVNNILVVRRPLYLNLG  328 (424)
Q Consensus       269 ~---~~i~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~-------------~~~v~~l~~s~~~~~l~~~  328 (424)
                      .   ..++.+.|..+..++..-.+..|.+.|.++++.+..+...             ....+.++++|+++.|.+.
T Consensus       177 g~~v~~lNeLe~~dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVT  252 (268)
T 3nok_A          177 GQPVELINELECANGVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMT  252 (268)
T ss_dssp             TEECCCEEEEEEETTEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEE
T ss_pred             CcccccccccEEeCCEEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEe
Confidence            2   2456677776766666657889999999999999988742             1356889999987655544

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.87  E-value=3.7e-06  Score=69.17  Aligned_cols=190  Identities=17%  Similarity=0.120  Sum_probs=125.9

Q ss_pred             eeeeecccc--CCeEEEEEccCCcEEEEeeCCC--cEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCce
Q 014475          114 LLKKWHAHY--RAVTCLVFSEDGSFLISGSEDG--CVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVS  189 (424)
Q Consensus       114 ~~~~~~~~~--~~i~~~~~~~~~~~l~s~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  189 (424)
                      .+.++ .|.  .....+.|++ +.++.+.+.+|  .|+.+|+.++..           +....-.. ..........++ 
T Consensus        11 v~~~~-phd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv-----------~~~~~l~~-~~fgeGi~~~~~-   75 (243)
T 3mbr_X           11 VVKRY-PHDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRI-----------LQRAEVPP-PYFGAGIVAWRD-   75 (243)
T ss_dssp             EEEEE-ECCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCE-----------EEEEECCT-TCCEEEEEEETT-
T ss_pred             EEEEc-CCCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCE-----------EEEEeCCC-CcceeEEEEeCC-
Confidence            44455 354  3466899986 66667777654  899999977432           22222111 122222233332 


Q ss_pred             eEEEEEeCCCcEEEEecCCCceeeeeecCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecc--
Q 014475          190 ATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSD--  267 (424)
Q Consensus       190 ~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~--  267 (424)
                      ......-.++.+.+||..+.+.+.++..+..-..++  +++..|+++..++.|.++|..+..         .+..+.-  
T Consensus        76 ~ly~ltw~~~~v~v~D~~tl~~~~ti~~~~~Gwglt--~dg~~L~vSdgs~~l~~iDp~t~~---------~~~~I~V~~  144 (243)
T 3mbr_X           76 RLIQLTWRNHEGFVYDLATLTPRARFRYPGEGWALT--SDDSHLYMSDGTAVIRKLDPDTLQ---------QVGSIKVTA  144 (243)
T ss_dssp             EEEEEESSSSEEEEEETTTTEEEEEEECSSCCCEEE--ECSSCEEEECSSSEEEEECTTTCC---------EEEEEECEE
T ss_pred             EEEEEEeeCCEEEEEECCcCcEEEEEeCCCCceEEe--eCCCEEEEECCCCeEEEEeCCCCe---------EEEEEEEcc
Confidence            555566678999999999999999998665445555  467778877778899999998863         2333322  


Q ss_pred             cC---cCeEEEEecCCCEEEEeCCCCcEEEEeCCCCcEEEEEecc-------------CCCeeEEEEEecCceeeecc
Q 014475          268 HS---KAVTCLAYSTGDLLISGSEDGMVRVWDPITHNIVRMFRLA-------------KGPVNNILVVRRPLYLNLGS  329 (424)
Q Consensus       268 ~~---~~i~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~-------------~~~v~~l~~s~~~~~l~~~~  329 (424)
                      +.   ..++.+.+..+..++..-.+..|.+.|.++++.+..+...             ....+.++++|+++.|.+.+
T Consensus       145 ~g~~~~~lNeLe~~~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTG  222 (243)
T 3mbr_X          145 GGRPLDNLNELEWVNGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTG  222 (243)
T ss_dssp             TTEECCCEEEEEEETTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEE
T ss_pred             CCcccccceeeEEeCCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEEC
Confidence            21   3456677766666666657889999999999999988732             12568899999876665543

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.87  E-value=5.1e-06  Score=74.92  Aligned_cols=239  Identities=8%  Similarity=-0.097  Sum_probs=151.1

Q ss_pred             eeEEEEECCCCceeeeecCCCCeeEEEECCCCC-EEEEecCCCcEEEEEccCcceeeeeccccCCeEEEEEccC-CcEEE
Q 014475           61 GSILYWSWSKPQVEVKSLPAEPIKPIAANSHGT-YIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSED-GSFLI  138 (424)
Q Consensus        61 g~i~vwd~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~  138 (424)
                      ..|+..++..............+..++|++.+. ++++-...+.|..+++..+.....+.........+++.+. +.+++
T Consensus        96 ~~I~~i~~~~~~~~~~~~~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~lY~  175 (386)
T 3v65_B           96 IDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYW  175 (386)
T ss_dssp             SCEEEECTTSCCCEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEEETTTTEEEE
T ss_pred             ccceeeccCCCcEEEEecCCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeCCCeEEE
Confidence            578888887766555545556789999997554 4455556788999998766544433333345677888874 45555


Q ss_pred             EeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCC-CcEEEEecCCCceeeeee-
Q 014475          139 SGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASED-RTCKVWSLLKGRLLRNIV-  216 (424)
Q Consensus       139 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d-~~v~iwd~~~~~~~~~~~-  216 (424)
                      +-...+.|.+.++...           ...............+++.|.+. .++++-... +.|..+++.......... 
T Consensus       176 ~d~~~~~I~~~~~dg~-----------~~~~l~~~~l~~P~giavdp~~g-~ly~td~~~~~~I~r~~~dG~~~~~~~~~  243 (386)
T 3v65_B          176 TDSGTSRIEVANLDGA-----------HRKVLLWQSLEKPRAIALHPMEG-TIYWTDWGNTPRIEASSMDGSGRRIIADT  243 (386)
T ss_dssp             EETTTTEEEECBTTSC-----------SCEEEECSSCSCEEEEEEETTTT-EEEEEECSSSCEEEEEETTSCSCEEEECS
T ss_pred             EcCCCCeEEEEeCCCC-----------ceEEeecCCCCCCcEEEEEcCCC-eEEEeccCCCCEEEEEeCCCCCcEEEEEC
Confidence            5556678888887531           11111223334568889987652 444444444 678888876443322222 


Q ss_pred             cCcceeEEEECCCCCEEEEE-eCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecCCCEEEEeCCCCcEEEE
Q 014475          217 FPSVIDAIALDPAEHVFYAG-SRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTGDLLISGSEDGMVRVW  295 (424)
Q Consensus       217 ~~~~i~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~t~~~dg~i~iw  295 (424)
                      .-...+.++++|++..|+.+ ...+.|..+|++...         ..............+++..+.++++-...+.|..+
T Consensus       244 ~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~---------~~~~~~~~~~~P~giav~~~~ly~td~~~~~V~~~  314 (386)
T 3v65_B          244 HLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSH---------RKAVISQGLPHPFAITVFEDSLYWTDWHTKSINSA  314 (386)
T ss_dssp             SCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCS---------CEEEECSSCSSEEEEEEETTEEEEEETTTTEEEEE
T ss_pred             CCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCe---------eEEEEECCCCCceEEEEECCEEEEeeCCCCeEEEE
Confidence            23457899999876666655 456789899887532         11112222345677777557777777788899999


Q ss_pred             eCCCCcEEEEEeccCCCeeEEEEEe
Q 014475          296 DPITHNIVRMFRLAKGPVNNILVVR  320 (424)
Q Consensus       296 d~~~~~~~~~~~~~~~~v~~l~~s~  320 (424)
                      +..+++.+..+.........+++..
T Consensus       315 ~~~~G~~~~~i~~~~~~p~gi~v~~  339 (386)
T 3v65_B          315 NKFTGKNQEIIRNKLHFPMDIHTLH  339 (386)
T ss_dssp             ETTTCCSCEEEECSCSCCCCEEEES
T ss_pred             ECCCCcceEEEccCCCCCceEEEEc
Confidence            9888887777765444555665543

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=98.86  E-value=1.8e-05  Score=71.60  Aligned_cols=241  Identities=10%  Similarity=-0.038  Sum_probs=152.1

Q ss_pred             eeEEEEECCCCceeeeecCCCCeeEEEECCCCCEE-EEecCCCcEEEEEccCc----ceeeeeccccCCeEEEEEcc-CC
Q 014475           61 GSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYI-AGGGQSGDIYMWEVASG----RLLKKWHAHYRAVTCLVFSE-DG  134 (424)
Q Consensus        61 g~i~vwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~~~~~dg~v~iwd~~~~----~~~~~~~~~~~~i~~~~~~~-~~  134 (424)
                      ..|+..+++.............+..++|++.+..| ++-...+.|+.+++...    .....+.........+++.+ .+
T Consensus        92 ~~I~~i~l~~~~~~~~~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~  171 (400)
T 3p5b_L           92 HEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHS  171 (400)
T ss_dssp             TEEEEECTTSCSCEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTT
T ss_pred             ceeEEEccCCcceeEeccccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCC
Confidence            67888888877665555556788999999855544 44455678999988652    22233333445678899987 55


Q ss_pred             cEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeC-CCcEEEEecCCCceee
Q 014475          135 SFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASE-DRTCKVWSLLKGRLLR  213 (424)
Q Consensus       135 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~-d~~v~iwd~~~~~~~~  213 (424)
                      +++++-...+.|.+.+++...           ....+...-.....+++.|.+. .++++-.. .+.|...++.......
T Consensus       172 ~lY~~d~~~~~I~~~~~~g~~-----------~~~l~~~~~~~P~~iavdp~~g-~ly~td~~~~~~I~~~~~dG~~~~~  239 (400)
T 3p5b_L          172 NIYWTDSVLGTVSVADTKGVK-----------RKTLFRENGSKPRAIVVDPVHG-FMYWTDWGTPAKIKKGGLNGVDIYS  239 (400)
T ss_dssp             EEEEEETTTTEEEEECTTTCS-----------EEEEEECSSCCEEEEEEETTTT-EEEEEECSSSCCEEEEETTSCSCEE
T ss_pred             ceEEEECCCCeEEEEeCCCCc-----------eEEEEeCCCCCcceEEEecccC-eEEEEeCCCCCEEEEEeCCCCccEE
Confidence            556666667889999885411           1111222334567899988652 34444322 4788888886443333


Q ss_pred             eee-cCcceeEEEECCCCCEEEEEe-CCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecCCCEEEEeCCCCc
Q 014475          214 NIV-FPSVIDAIALDPAEHVFYAGS-RDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTGDLLISGSEDGM  291 (424)
Q Consensus       214 ~~~-~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~t~~~dg~  291 (424)
                      ... .-...+.++++|++..|+.+. ..+.|..+|++....       ..+............+++..+.++++-...+.
T Consensus       240 ~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~-------~~~~~~~~~l~~P~gl~v~~~~lywtd~~~~~  312 (400)
T 3p5b_L          240 LVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR-------KTILEDEKRLAHPFSLAVFEDKVFWTDIINEA  312 (400)
T ss_dssp             EECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCC-------EEEEECSSTTSSEEEEEEETTEEEEEESSSCS
T ss_pred             EEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCcc-------EEEEeCCCCCCCCEEEEEeCCEEEEecCCCCe
Confidence            222 225678999998777776664 467899999876431       22222112234456777755777777778889


Q ss_pred             EEEEeCCCCcEEEEEeccCCCeeEEEEEe
Q 014475          292 VRVWDPITHNIVRMFRLAKGPVNNILVVR  320 (424)
Q Consensus       292 i~iwd~~~~~~~~~~~~~~~~v~~l~~s~  320 (424)
                      |..+|..+|+.+..+.........+....
T Consensus       313 V~~~~~~~G~~~~~i~~~~~~p~~i~v~~  341 (400)
T 3p5b_L          313 IFSANRLTGSDVNLLAENLLSPEDMVLFH  341 (400)
T ss_dssp             EEEEESSSCCCCEEEECSCSCEEEEEEES
T ss_pred             EEEEEcCCCCceEEEecCCCCCceEEEEe
Confidence            99999888888877765444555665543

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.84  E-value=1e-05  Score=70.42  Aligned_cols=234  Identities=13%  Similarity=0.052  Sum_probs=133.6

Q ss_pred             eEEecceeecCCCccccCCCCceeEEEEECCCCceeeeecCCCCeeEEEECCCCCEEEEecCC--CcEEEEEccCcceee
Q 014475           39 LACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQS--GDIYMWEVASGRLLK  116 (424)
Q Consensus        39 v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d--g~v~iwd~~~~~~~~  116 (424)
                      ...++  +.++++++++.... +.|..||.+.... ........+..+++.++|+++++....  ..|..+|..+++...
T Consensus        34 pegia--~~~~g~lyv~d~~~-~~I~~~d~~g~~~-~~~~~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~  109 (306)
T 2p4o_A           34 LENLA--SAPDGTIFVTNHEV-GEIVSITPDGNQQ-IHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVET  109 (306)
T ss_dssp             EEEEE--ECTTSCEEEEETTT-TEEEEECTTCCEE-EEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEE
T ss_pred             cceEE--ECCCCCEEEEeCCC-CeEEEECCCCceE-EEEeCCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEE
Confidence            45556  88998866665555 8999999876432 223334678999999999966654332  247777777776533


Q ss_pred             eec-cccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEE
Q 014475          117 KWH-AHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSA  195 (424)
Q Consensus       117 ~~~-~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~  195 (424)
                      ... ........++..+++..+++-..++.|..+|..++............ .......-...+.+  ++++. ..+++-
T Consensus       110 ~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~-~~~~~~~~~~pngi--s~dg~-~lyv~d  185 (306)
T 2p4o_A          110 LLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLA-RSNSESVFPAANGL--KRFGN-FLYVSN  185 (306)
T ss_dssp             EEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGS-CSSTTCCSCSEEEE--EEETT-EEEEEE
T ss_pred             EEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccc-cccccCCCCcCCCc--CcCCC-EEEEEe
Confidence            222 12233455665555555555556888999987542100000000000 00000111233444  67662 455555


Q ss_pred             eCCCcEEEEecCC-Cce--eeeeecCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCe
Q 014475          196 SEDRTCKVWSLLK-GRL--LRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAV  272 (424)
Q Consensus       196 ~~d~~v~iwd~~~-~~~--~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i  272 (424)
                      ...+.|..+|+.. ++.  ...+........++++++|+++++....+.|.++|.....        ..+..........
T Consensus       186 ~~~~~I~~~~~~~~g~~~~~~~~~~~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~G~~--------~~~~~~~~~~~~p  257 (306)
T 2p4o_A          186 TEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPDRST--------TIIAQAEQGVIGS  257 (306)
T ss_dssp             TTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBTTCCEEEECTTCCE--------EEEECGGGTCTTE
T ss_pred             CCCCEEEEEEeCCCCCCCccEEEeccCCCCCeEECCCCCEEEEeCCCCeEEEECCCCCE--------EEEeecccccCCc
Confidence            6678999999874 332  1222222356778999999877776677899999875321        1122233333568


Q ss_pred             EEEEec---C-CCEEEEeCC
Q 014475          273 TCLAYS---T-GDLLISGSE  288 (424)
Q Consensus       273 ~~~~~~---~-~~~l~t~~~  288 (424)
                      ++++|.   | ++.|+.++.
T Consensus       258 ~~~a~~g~~~d~~~LyVt~~  277 (306)
T 2p4o_A          258 TAVAFGQTEGDCTAIYVVTN  277 (306)
T ss_dssp             EEEEECCSTTTTTEEEEEEC
T ss_pred             eEEEEecccCCCCEEEEECC
Confidence            899997   6 555554443

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.83  E-value=4.1e-06  Score=73.04  Aligned_cols=227  Identities=9%  Similarity=0.012  Sum_probs=134.5

Q ss_pred             CCeeEEEECCCCCEEEEecCCCcEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEeeCCC--cEEEEeCCcccchh
Q 014475           81 EPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDG--CVRIWSLLTVFEEC  158 (424)
Q Consensus        81 ~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg--~i~iwd~~~~~~~~  158 (424)
                      .....++|+++++++++-..++.|..||.... ....+. ....+..+++.++++++++.....  .|..+|..++.   
T Consensus        32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~-~~~~~~-~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~---  106 (306)
T 2p4o_A           32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGN-QQIHAT-VEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGT---  106 (306)
T ss_dssp             CCEEEEEECTTSCEEEEETTTTEEEEECTTCC-EEEEEE-CSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSC---
T ss_pred             CCcceEEECCCCCEEEEeCCCCeEEEECCCCc-eEEEEe-CCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCe---
Confidence            56789999999997777767889999997653 333332 234688999999998666554332  36666764421   


Q ss_pred             cccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCce-eeee-------e---cCcceeEEEEC
Q 014475          159 ESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRL-LRNI-------V---FPSVIDAIALD  227 (424)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~-~~~~-------~---~~~~i~~~~~~  227 (424)
                            ...+.... .......++..+.+  ..+++-..++.|..+|..+++. +...       .   .-...+.+  +
T Consensus       107 ------~~~~~~~~-~~~~~~g~~~~~~~--~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s  175 (306)
T 2p4o_A          107 ------VETLLTLP-DAIFLNGITPLSDT--QYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--K  175 (306)
T ss_dssp             ------EEEEEECT-TCSCEEEEEESSSS--EEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--E
T ss_pred             ------EEEEEeCC-CccccCcccccCCC--cEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--C
Confidence                  11111111 11222334433332  4445544688899999765421 1100       0   11123444  7


Q ss_pred             CCCCEEEEEe-CCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCCCcEEE-
Q 014475          228 PAEHVFYAGS-RDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVR-  304 (424)
Q Consensus       228 ~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~~~-  304 (424)
                      |+++.|+++. ..+.|..+++.......   ........    .....+++++ ++++++....+.|.++|.. ++... 
T Consensus       176 ~dg~~lyv~d~~~~~I~~~~~~~~g~~~---~~~~~~~~----~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~  247 (306)
T 2p4o_A          176 RFGNFLYVSNTEKMLLLRIPVDSTDKPG---EPEIFVEQ----TNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTII  247 (306)
T ss_dssp             EETTEEEEEETTTTEEEEEEBCTTSCBC---CCEEEEES----CCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEE
T ss_pred             cCCCEEEEEeCCCCEEEEEEeCCCCCCC---ccEEEecc----CCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEE
Confidence            7887666654 56789999987521100   01111111    3456688888 8887777778899999975 66533 


Q ss_pred             -EEeccCCCeeEEEEE---ecCceeeeccCC
Q 014475          305 -MFRLAKGPVNNILVV---RRPLYLNLGSFS  331 (424)
Q Consensus       305 -~~~~~~~~v~~l~~s---~~~~~l~~~~~d  331 (424)
                       .+.......++++|.   |++..|..++..
T Consensus       248 ~~~~~~~~~p~~~a~~g~~~d~~~LyVt~~~  278 (306)
T 2p4o_A          248 AQAEQGVIGSTAVAFGQTEGDCTAIYVVTNG  278 (306)
T ss_dssp             ECGGGTCTTEEEEEECCSTTTTTEEEEEECT
T ss_pred             eecccccCCceEEEEecccCCCCEEEEECCC
Confidence             333333567899998   887777665443

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=98.83  E-value=2.4e-06  Score=81.18  Aligned_cols=289  Identities=13%  Similarity=0.034  Sum_probs=161.4

Q ss_pred             CCCccccCCCCceeEEEEECCCCceeeeecCCCCe----------eEEEECCCCCEEEEecCCCcEEEEEccCcceeeee
Q 014475           49 SSQLREQPSASSGSILYWSWSKPQVEVKSLPAEPI----------KPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKW  118 (424)
Q Consensus        49 ~~~~l~~~~~~~g~i~vwd~~~~~~~~~~~~~~~v----------~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~  118 (424)
                      ++..++.+..+ + |.-+|..+++...+.....+.          ..+++  .+..+++++.++.|.-+|.++|+.+...
T Consensus        68 ~g~vyv~~~~~-~-v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~--~~~~v~~~t~dg~l~AlD~~TG~~~W~~  143 (582)
T 1flg_A           68 DGVIYVTASYS-R-LFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAI--YGDKVFFGTLDASVVALNKNTGKVVWKK  143 (582)
T ss_dssp             TTEEEEEETTT-E-EEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEE--ETTEEEEEETTTEEEEEESSSCCEEEEE
T ss_pred             CCEEEEEcCCC-C-EEEEECCCCcEEEEEcCCCCcccccccccCCCccEE--ECCEEEEEeCCCEEEEEECCCCCEEeee
Confidence            44444443333 4 888999988887665433221          11222  3456777888999999999999988765


Q ss_pred             ccccC----CeE-EEEEcc---CCc-EEEEee------CCCcEEEEeCCcccchhcccccccceEE-------ee-----
Q 014475          119 HAHYR----AVT-CLVFSE---DGS-FLISGS------EDGCVRIWSLLTVFEECESQRASHLYLH-------SF-----  171 (424)
Q Consensus       119 ~~~~~----~i~-~~~~~~---~~~-~l~s~~------~dg~i~iwd~~~~~~~~~~~~~~~~~~~-------~~-----  171 (424)
                      +....    .+. .-....   +++ .+++++      .+|.|..+|.+++........... .+.       ..     
T Consensus       144 ~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~~~~~-~~~p~~~~~~~~~g~~g  222 (582)
T 1flg_A          144 KFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEG-HMGRLNGKDSTVTGDVK  222 (582)
T ss_dssp             ECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTT-CEEEETTEEEEESSCTT
T ss_pred             cCCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeecCCCcc-ccccccCcccccccccc
Confidence            43210    111 111111   222 555554      378999999988654432211100 000       00     


Q ss_pred             ----c---------------CCcCceeEEEEEEcCceeEEEEEeC--------------------C----CcEEEEecCC
Q 014475          172 ----T---------------GHTLRITDIVIGYGGVSATIVSASE--------------------D----RTCKVWSLLK  208 (424)
Q Consensus       172 ----~---------------~~~~~i~~~~~~~~~~~~~l~~~~~--------------------d----~~v~iwd~~~  208 (424)
                          .               +....-..+++.+..  ..++.+..                    |    +.|.-+|.++
T Consensus       223 ~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~--g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~T  300 (582)
T 1flg_A          223 APSWPDDRNSPTGKVESWSHGGGAPWQSASFDAET--NTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSS  300 (582)
T ss_dssp             CTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTT--TEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTT
T ss_pred             cccCCCccccccccccccccCCccccCCceEcCCC--CEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCC
Confidence                0               000011234555554  45555442                    2    5899999999


Q ss_pred             CceeeeeecCc----------ceeEEEEC-CCCC---EEEEEeCCCcEEEEEcCCCCCCCCCcCc--------------e
Q 014475          209 GRLLRNIVFPS----------VIDAIALD-PAEH---VFYAGSRDGSIYIAALNAESPSTSSYGM--------------H  260 (424)
Q Consensus       209 ~~~~~~~~~~~----------~i~~~~~~-~~~~---~l~~~~~dg~i~i~d~~~~~~~~~~~~~--------------~  260 (424)
                      ++.+..++...          ...-+... .+|+   .++.++.+|.++++|..+++........              +
T Consensus       301 G~~~W~~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~  380 (582)
T 1flg_A          301 GEVKWFYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNITWASHIDLKTGR  380 (582)
T ss_dssp             CCEEEEEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCCSEEEECTTTCC
T ss_pred             CCEEEEEeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCccccccccccCCC
Confidence            99998876321          11111221 4563   7888999999999999887542110000              0


Q ss_pred             eee--------------------eecccC--cCeEEEEecC-CCEEEEe-------------------------------
Q 014475          261 IIG--------------------SLSDHS--KAVTCLAYST-GDLLISG-------------------------------  286 (424)
Q Consensus       261 ~~~--------------------~~~~~~--~~i~~~~~~~-~~~l~t~-------------------------------  286 (424)
                      ++.                    ...+..  ..-..++++| ..++++.                               
T Consensus       381 p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~p~  460 (582)
T 1flg_A          381 PVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAYLGMGFRIKRM  460 (582)
T ss_dssp             EEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEES
T ss_pred             EeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcceeeecccccccCCCceeccceeecCC
Confidence            000                    000000  0001345555 3333332                               


Q ss_pred             --CCCCcEEEEeCCCCcEEEEEeccCCCeeEEEEEecCceeeeccCCCceeeccCCCCCCC
Q 014475          287 --SEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGSQLP  345 (424)
Q Consensus       287 --~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~d~~i~iw~~~~~~~~  345 (424)
                        ..+|.|.-||+.+++.+-+.... .++..-.....+..++.++.|+.++.+|.++++..
T Consensus       461 ~~~~~G~l~A~D~~tG~~~W~~~~~-~~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~l  520 (582)
T 1flg_A          461 YDDHVGSLRAMDPVSGKVVWEHKEH-LPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKEL  520 (582)
T ss_dssp             CSSCSEEEEEECTTTCCEEEEEEES-SCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred             CCCCcceEEEEECCCCCEEEEecCC-CCCcccceEeCCCEEEEECCCCcEEEEECCCCCEE
Confidence              13688999999999998877643 33433334445667888999999999999988754

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.80  E-value=1.5e-06  Score=72.18  Aligned_cols=176  Identities=11%  Similarity=0.059  Sum_probs=117.7

Q ss_pred             EEecceeecCCCccccCCCCceeEEEEECCCCceeeeecCCCCeeE--EEECCCCCEEEEecCCCcEEEEEccCcceeee
Q 014475           40 ACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSLPAEPIKP--IAANSHGTYIAGGGQSGDIYMWEVASGRLLKK  117 (424)
Q Consensus        40 ~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~~~~~~~v~~--~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~  117 (424)
                      ..+.  |+ ++.+.++++.+ |.|+++|+++++..... .......  +++..+ +..++.-.++.+.+||.++.+.+.+
T Consensus        58 qGL~--~~-~~~Ly~stG~~-g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~g~-~Ly~ltw~~~~v~V~D~~Tl~~~~t  131 (268)
T 3nok_A           58 QGLV--FH-QGHFFESTGHQ-GTLRQLSLESAQPVWME-RLGNIFAEGLASDGE-RLYQLTWTEGLLFTWSGMPPQRERT  131 (268)
T ss_dssp             EEEE--EE-TTEEEEEETTT-TEEEECCSSCSSCSEEE-ECTTCCEEEEEECSS-CEEEEESSSCEEEEEETTTTEEEEE
T ss_pred             ceEE--EE-CCEEEEEcCCC-CEEEEEECCCCcEEeEE-CCCCcceeEEEEeCC-EEEEEEccCCEEEEEECCcCcEEEE
Confidence            4444  65 35555566665 88999999999877655 4344433  555433 3444455688999999999999988


Q ss_pred             eccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeec--CCc---CceeEEEEEEcCceeEE
Q 014475          118 WHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFT--GHT---LRITDIVIGYGGVSATI  192 (424)
Q Consensus       118 ~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~--~~~---~~i~~~~~~~~~~~~~l  192 (424)
                      +... ..-..++  ++++.|+.+..++.|.++|..+...           +..+.  .+.   ..++.+.|. ++  ...
T Consensus       132 i~~~-~eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v-----------~~~I~V~~~g~~v~~lNeLe~~-dG--~ly  194 (268)
T 3nok_A          132 TRYS-GEGWGLC--YWNGKLVRSDGGTMLTFHEPDGFAL-----------VGAVQVKLRGQPVELINELECA-NG--VIY  194 (268)
T ss_dssp             EECS-SCCCCEE--EETTEEEEECSSSEEEEECTTTCCE-----------EEEEECEETTEECCCEEEEEEE-TT--EEE
T ss_pred             EeCC-CceeEEe--cCCCEEEEECCCCEEEEEcCCCCeE-----------EEEEEeCCCCcccccccccEEe-CC--EEE
Confidence            8743 2223444  4577777777788999999976322           22221  122   234566665 54  555


Q ss_pred             EEEeCCCcEEEEecCCCceeeeeecC--------------cceeEEEECCCCCEEEEEeC
Q 014475          193 VSASEDRTCKVWSLLKGRLLRNIVFP--------------SVIDAIALDPAEHVFYAGSR  238 (424)
Q Consensus       193 ~~~~~d~~v~iwd~~~~~~~~~~~~~--------------~~i~~~~~~~~~~~l~~~~~  238 (424)
                      +....++.|.+.|.++++.+..+...              ...+.++++|+++.|++.+.
T Consensus       195 anvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK  254 (268)
T 3nok_A          195 ANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGK  254 (268)
T ss_dssp             EEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEET
T ss_pred             EEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCC
Confidence            55557889999999999998888732              35689999997766666553

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=98.79  E-value=3.4e-07  Score=88.92  Aligned_cols=253  Identities=11%  Similarity=0.018  Sum_probs=138.8

Q ss_pred             ceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCceeeeec-C-CCCeeEEEECCC
Q 014475           14 GIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSL-P-AEPIKPIAANSH   91 (424)
Q Consensus        14 ~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~~~-~-~~~v~~~~~s~~   91 (424)
                      .+.+||..+++..........+.......+  +.++++.++++|.+++.+.+||..+.+...... + ...-.++...++
T Consensus       220 ~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~--~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~d  297 (656)
T 1k3i_A          220 LTSSWDPSTGIVSDRTVTVTKHDMFCPGIS--MDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSD  297 (656)
T ss_dssp             EEEEECTTTCCBCCCEEEECSCCCSSCEEE--ECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTT
T ss_pred             EEEEEeCCCCcEEeCcccCCCCCCcccccc--CCCCCCEEEeCCCCCCceEEecCcCCceeECCCCCccccccceEEecC
Confidence            588999988764321111111111122233  678999999999766799999988765432211 1 112235566679


Q ss_pred             CCEEEEec-CC-----CcEEEEEccCcceeeee----ccccCCeEEEEEccCCcEEEEeeCCC---------cEEEEeCC
Q 014475           92 GTYIAGGG-QS-----GDIYMWEVASGRLLKKW----HAHYRAVTCLVFSEDGSFLISGSEDG---------CVRIWSLL  152 (424)
Q Consensus        92 ~~~l~~~~-~d-----g~v~iwd~~~~~~~~~~----~~~~~~i~~~~~~~~~~~l~s~~~dg---------~i~iwd~~  152 (424)
                      +++++.|+ .+     ..+.+||..+++-...-    ......-....+..++..++.++.+|         .+..||..
T Consensus       298 g~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~  377 (656)
T 1k3i_A          298 GRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTS  377 (656)
T ss_dssp             SCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECS
T ss_pred             CeEEEEeCcccCCcccccceEeCCCCCcceeCCCccccccccccccceeecCCceEEEECCCCcEEEecCccceeeeecC
Confidence            99999998 34     46999999876533210    00000000011223445555554444         46677775


Q ss_pred             cccchhcccccccceEEeecCCc---------CceeEEEEEE-cCceeEEEEEeCCC-----------cEEEEecCCCce
Q 014475          153 TVFEECESQRASHLYLHSFTGHT---------LRITDIVIGY-GGVSATIVSASEDR-----------TCKVWSLLKGRL  211 (424)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~---------~~i~~~~~~~-~~~~~~l~~~~~d~-----------~v~iwd~~~~~~  211 (424)
                      +..-           ......+.         ..-.++.+.. ++  ++++.|+.++           .+.+||..+.+-
T Consensus       378 ~~~w-----------~~~~~~~~~~~~~~~~~~~~~av~~~~~~~--~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W  444 (656)
T 1k3i_A          378 GSGD-----------VKSAGKRQSNRGVAPDAMCGNAVMYDAVKG--KILTFGGSPDYQDSDATTNAHIITLGEPGTSPN  444 (656)
T ss_dssp             TTCE-----------EEEEEECEETTEECCCCBTCEEEEEETTTT--EEEEECCBSSSSSSBCCCCEEEEECCSTTSCCE
T ss_pred             Ccce-----------eecCCccccccccCCCCCCCceEeccCCCC--eEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCe
Confidence            5210           11111111         1112333322 33  7888887543           678888877654


Q ss_pred             eeee----ecCcceeEEEECCCCCEEEEEeCC-----------CcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEE
Q 014475          212 LRNI----VFPSVIDAIALDPAEHVFYAGSRD-----------GSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLA  276 (424)
Q Consensus       212 ~~~~----~~~~~i~~~~~~~~~~~l~~~~~d-----------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  276 (424)
                      ....    ..+..-.+++..|++++++.|+.+           ..+.+||..+..       +..+..+........+..
T Consensus       445 ~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~-------W~~~~~~~~~R~~hs~a~  517 (656)
T 1k3i_A          445 TVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDT-------FYKQNPNSIVRVYHSISL  517 (656)
T ss_dssp             EEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTE-------EEECCCCSSCCCTTEEEE
T ss_pred             eEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCCCc-------eeecCCCCCccccccHhh
Confidence            4332    223334566778899999998754           468999987753       233332222222233344


Q ss_pred             ecC-CCEEEEeCC
Q 014475          277 YST-GDLLISGSE  288 (424)
Q Consensus       277 ~~~-~~~l~t~~~  288 (424)
                      +.| +++++.|+.
T Consensus       518 ll~dg~v~v~GG~  530 (656)
T 1k3i_A          518 LLPDGRVFNGGGG  530 (656)
T ss_dssp             ECTTSCEEEEECC
T ss_pred             cCCCcEEEecCCC
Confidence            556 889999885

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.73  E-value=7.3e-06  Score=67.43  Aligned_cols=194  Identities=12%  Similarity=0.090  Sum_probs=124.0

Q ss_pred             ceEEEeeCCCCCCCceEEecceeecCCCccccCCCC-ceeEEEEECCCCceeeeecCCCCeeEEEECCCCC-EEEEecCC
Q 014475           24 AEQLRYKSCASPPHGLACVGQRFLASSQLREQPSAS-SGSILYWSWSKPQVEVKSLPAEPIKPIAANSHGT-YIAGGGQS  101 (424)
Q Consensus        24 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~-~g~i~vwd~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~d  101 (424)
                      +.+.++ .|. ...-..-+.  |+. +.+..+++.. ...|+.+|+.+++.................+.++ .....-.+
T Consensus        10 ~v~~~~-phd-~~~ftqGL~--~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~ltw~~   84 (243)
T 3mbr_X           10 RVVKRY-PHD-TTAFTEGLF--YLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQLTWRN   84 (243)
T ss_dssp             EEEEEE-ECC-TTCCEEEEE--EET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSS
T ss_pred             EEEEEc-CCC-CccccccEE--EEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEEEeeC
Confidence            344555 342 223344555  776 5555665553 2589999999998876655444443333333334 44445568


Q ss_pred             CcEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecC--Cc---C
Q 014475          102 GDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTG--HT---L  176 (424)
Q Consensus       102 g~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~--~~---~  176 (424)
                      +.+.+||.++.+.+.++.... .-..++  ++++.|+.+..++.|.++|..+...           +..+.-  +.   .
T Consensus        85 ~~v~v~D~~tl~~~~ti~~~~-~Gwglt--~dg~~L~vSdgs~~l~~iDp~t~~~-----------~~~I~V~~~g~~~~  150 (243)
T 3mbr_X           85 HEGFVYDLATLTPRARFRYPG-EGWALT--SDDSHLYMSDGTAVIRKLDPDTLQQ-----------VGSIKVTAGGRPLD  150 (243)
T ss_dssp             SEEEEEETTTTEEEEEEECSS-CCCEEE--ECSSCEEEECSSSEEEEECTTTCCE-----------EEEEECEETTEECC
T ss_pred             CEEEEEECCcCcEEEEEeCCC-CceEEe--eCCCEEEEECCCCeEEEEeCCCCeE-----------EEEEEEccCCcccc
Confidence            899999999999999887433 224454  4566666666688999999976321           222221  22   2


Q ss_pred             ceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeeecC--------------cceeEEEECCCCCEEEEEeCC
Q 014475          177 RITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFP--------------SVIDAIALDPAEHVFYAGSRD  239 (424)
Q Consensus       177 ~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~--------------~~i~~~~~~~~~~~l~~~~~d  239 (424)
                      .++.+.+. ++  ...+..-.+..|.+.|.++++.+..+...              ...+.++++|+++.|++.+..
T Consensus       151 ~lNeLe~~-~G--~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK~  224 (243)
T 3mbr_X          151 NLNELEWV-NG--ELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGKR  224 (243)
T ss_dssp             CEEEEEEE-TT--EEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEETT
T ss_pred             cceeeEEe-CC--EEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECCC
Confidence            34455554 44  55555556889999999999998888622              256899999987777766643

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=98.70  E-value=3.4e-05  Score=67.39  Aligned_cols=236  Identities=10%  Similarity=-0.043  Sum_probs=146.9

Q ss_pred             eeEEEEECCCCc--eeeeecCCCCeeEEEECCC-CCEEEEecCCCcEEEEEccCccee-eeeccccCCeEEEEEcc-CCc
Q 014475           61 GSILYWSWSKPQ--VEVKSLPAEPIKPIAANSH-GTYIAGGGQSGDIYMWEVASGRLL-KKWHAHYRAVTCLVFSE-DGS  135 (424)
Q Consensus        61 g~i~vwd~~~~~--~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~v~iwd~~~~~~~-~~~~~~~~~i~~~~~~~-~~~  135 (424)
                      ..|+..+++...  ..........+.+++|++. +.++.+-...+.|..+++..+... ..+.........+++.+ .++
T Consensus        13 ~~I~~i~l~~~~~~~~~~~~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g~   92 (318)
T 3sov_A           13 RDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEK   92 (318)
T ss_dssp             EEEEEEETTCTTSCCEEEEEEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTTE
T ss_pred             CeEEEEECCCCceEEEEEecCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCCe
Confidence            789999998763  2222222345778999985 555555566788999998766422 22222334567899987 455


Q ss_pred             EEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEe--CCCcEEEEecCCCceee
Q 014475          136 FLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSAS--EDRTCKVWSLLKGRLLR  213 (424)
Q Consensus       136 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~--~d~~v~iwd~~~~~~~~  213 (424)
                      ++++-...+.|.++++....         .  .............+++.|.+  ..|+.+.  ..+.|...++.... ..
T Consensus        93 ly~~d~~~~~I~~~~~dG~~---------~--~~l~~~~~~~P~giavdp~~--g~ly~td~~~~~~I~r~~~dG~~-~~  158 (318)
T 3sov_A           93 LYWTDSETNRIEVSNLDGSL---------R--KVLFWQELDQPRAIALDPSS--GFMYWTDWGEVPKIERAGMDGSS-RF  158 (318)
T ss_dssp             EEEEETTTTEEEEEETTSCS---------C--EEEECSSCSSEEEEEEEGGG--TEEEEEECSSSCEEEEEETTSCS-CE
T ss_pred             EEEEECCCCEEEEEECCCCc---------E--EEEEeCCCCCccEEEEeCCC--CEEEEEecCCCCEEEEEEcCCCC-eE
Confidence            55665667789999985411         1  11122333456788998765  3444444  35788888876433 22


Q ss_pred             eee--cCcceeEEEECCCCCEEEEE-eCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecCCCEEEEeCCCC
Q 014475          214 NIV--FPSVIDAIALDPAEHVFYAG-SRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTGDLLISGSEDG  290 (424)
Q Consensus       214 ~~~--~~~~i~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~t~~~dg  290 (424)
                      .+.  .-...+.++++|++..|+.+ +..+.|..+|++....       +.+  ..+.......+++..+.++++-...+
T Consensus       159 ~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~-------~~~--~~~~~~~P~glav~~~~lywtd~~~~  229 (318)
T 3sov_A          159 IIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNR-------QAV--VKGSLPHPFALTLFEDILYWTDWSTH  229 (318)
T ss_dssp             EEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-------EEE--ECSCCSCEEEEEEETTEEEEEETTTT
T ss_pred             EEEECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCce-------EEE--ecCCCCCceEEEEeCCEEEEEecCCC
Confidence            322  22456899999976666655 4567899999875321       111  12233456677776677777777788


Q ss_pred             cEEEEeCCCCcEEEEEeccCCCeeEEEEE
Q 014475          291 MVRVWDPITHNIVRMFRLAKGPVNNILVV  319 (424)
Q Consensus       291 ~i~iwd~~~~~~~~~~~~~~~~v~~l~~s  319 (424)
                      .|..++..+++....+.........++..
T Consensus       230 ~V~~~~~~~G~~~~~i~~~~~~P~~i~v~  258 (318)
T 3sov_A          230 SILACNKYTGEGLREIHSDIFSPMDIHAF  258 (318)
T ss_dssp             EEEEEETTTCCSCEEEECCCSSCCCEEEE
T ss_pred             eEEEEECCCCCceEEEeCCCCCCcEEEEe
Confidence            99999998888777766443344455544

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=98.68  E-value=0.0001  Score=64.35  Aligned_cols=218  Identities=9%  Similarity=-0.019  Sum_probs=131.8

Q ss_pred             CceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCC----Cceeeee-cCCCCeeEEE
Q 014475           13 TGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSK----PQVEVKS-LPAEPIKPIA   87 (424)
Q Consensus        13 g~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~----~~~~~~~-~~~~~v~~~~   87 (424)
                      ..|+..|+.+++....+..    ......++  |.+.++.+..+...++.|..++.++    ....... ........++
T Consensus        10 ~~I~~i~~~~~~~~~~~~~----~~~p~g~~--~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~gla   83 (316)
T 1ijq_A           10 HEVRKMTLDRSEYTSLIPN----LRNVVALD--TEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLA   83 (316)
T ss_dssp             SSEEEEETTSCCCEEEECS----CSSEEEEE--EETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEE
T ss_pred             CeEEEEECCCcceEehhcC----CCceEEEE--EEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEE
Confidence            5799999998776655432    23456666  9887766666554448999999876    2222211 2224568899


Q ss_pred             ECCC-CCEEEEecCCCcEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEeeC-C-CcEEEEeCCcccchhcccccc
Q 014475           88 ANSH-GTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSE-D-GCVRIWSLLTVFEECESQRAS  164 (424)
Q Consensus        88 ~s~~-~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~-d-g~i~iwd~~~~~~~~~~~~~~  164 (424)
                      +.+. +++.++-...+.|.+.++........+.........+++.|.+..|+.+.. . +.|...++...         .
T Consensus        84 vd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~---------~  154 (316)
T 1ijq_A           84 VDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV---------D  154 (316)
T ss_dssp             EETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC---------C
T ss_pred             EeecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCC---------C
Confidence            9874 455555566788999998654333333334456889999986555554443 2 67888887431         1


Q ss_pred             cceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeee-c---CcceeEEEECCCCCEEEEEeCCC
Q 014475          165 HLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-F---PSVIDAIALDPAEHVFYAGSRDG  240 (424)
Q Consensus       165 ~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~-~---~~~i~~~~~~~~~~~l~~~~~dg  240 (424)
                      .  .......-.....+++++++. .+.++-+..+.|..+|+.... ...+. .   ......+++. .+.++++-...+
T Consensus       155 ~--~~~~~~~~~~P~gla~d~~~~-~lY~~D~~~~~I~~~d~dg~~-~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~  229 (316)
T 1ijq_A          155 I--YSLVTENIQWPNGITLDLLSG-RLYWVDSKLHSISSIDVNGGN-RKTILEDEKRLAHPFSLAVF-EDKVFWTDIINE  229 (316)
T ss_dssp             E--EEEECSSCSCEEEEEEETTTT-EEEEEETTTTEEEEEETTSCS-CEEEEECTTTTSSEEEEEEE-TTEEEEEETTTT
T ss_pred             e--EEEEECCCCCceEEEEeccCC-EEEEEECCCCeEEEEecCCCc-eEEEeecCCccCCcEEEEEE-CCEEEEEECCCC
Confidence            1  111112234567899997662 445555566789999987433 23222 1   2345667774 355555556677


Q ss_pred             cEEEEEcCCC
Q 014475          241 SIYIAALNAE  250 (424)
Q Consensus       241 ~i~i~d~~~~  250 (424)
                      .|..++..++
T Consensus       230 ~V~~~~~~~g  239 (316)
T 1ijq_A          230 AIFSANRLTG  239 (316)
T ss_dssp             EEEEEETTTC
T ss_pred             eEEEEeCCCC
Confidence            8888887654

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.64  E-value=3e-05  Score=64.70  Aligned_cols=200  Identities=11%  Similarity=0.123  Sum_probs=131.4

Q ss_pred             CceEEecceeecCCCccccCCCCceeEEEEECCCCceeeeec--CCCCeeEEEECCCCCEEEEecCCCcEEEEEccCcce
Q 014475           37 HGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSL--PAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRL  114 (424)
Q Consensus        37 ~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~  114 (424)
                      ..+..++  +.|++..|.+....++.|...|.+ ++......  -......+++.+++.++++.-.++.+.++++.....
T Consensus        27 ~~lSGla--~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~~~  103 (255)
T 3qqz_A           27 NNISSLT--WSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLTPNSE  103 (255)
T ss_dssp             SCEEEEE--EETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEECTTCC
T ss_pred             cCcceeE--EeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcCCCCe
Confidence            4577777  999877777655555999999998 55443332  235788999999998777766678899998865442


Q ss_pred             e---eeec------cccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEe----ecCCcCceeEE
Q 014475          115 L---KKWH------AHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHS----FTGHTLRITDI  181 (424)
Q Consensus       115 ~---~~~~------~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~----~~~~~~~i~~~  181 (424)
                      +   ....      ........++|+|.++.|.++.......+|.+......     ........    -..+...+.++
T Consensus       104 i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~-----~~l~i~~~~~~~~~~~~~d~S~l  178 (255)
T 3qqz_A          104 VKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSS-----NELHISKDKALQRQFTLDDVSGA  178 (255)
T ss_dssp             EEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCS-----SCCEEEECHHHHHTCCSSCCCEE
T ss_pred             eeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccC-----CceeeecchhhccccccCCceeE
Confidence            1   2211      23455789999998877777776656666666410000     00000000    01133457889


Q ss_pred             EEEEcCceeEEEEEeCCCcEEEEecCCCceeeeeecC----------cceeEEEECCCCCEEEEEeCCCcEEEEEc
Q 014475          182 VIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFP----------SVIDAIALDPAEHVFYAGSRDGSIYIAAL  247 (424)
Q Consensus       182 ~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~----------~~i~~~~~~~~~~~l~~~~~dg~i~i~d~  247 (424)
                      +++|... .+++.+..++.+..+|.. ++.+..+...          .....+++.++|++ ++.+..+.++.+.-
T Consensus       179 ~~dp~tg-~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~l-yIvsE~n~~y~f~~  251 (255)
T 3qqz_A          179 EFNQQKN-TLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNI-YIVSEPNRFYRFTP  251 (255)
T ss_dssp             EEETTTT-EEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCE-EEEETTTEEEEEEC
T ss_pred             EEcCCCC-eEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECCCCCE-EEEcCCceEEEEEe
Confidence            9998764 677777788899999965 6666666633          26789999999984 44566666666643

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=98.62  E-value=2e-06  Score=83.51  Aligned_cols=242  Identities=10%  Similarity=0.067  Sum_probs=136.0

Q ss_pred             eEEEECC-CCCEEEEecCCC-----------cEEEEEccCcceee--eec-cccCCeEEEEEccCCcEEEEeeC-CCcEE
Q 014475           84 KPIAANS-HGTYIAGGGQSG-----------DIYMWEVASGRLLK--KWH-AHYRAVTCLVFSEDGSFLISGSE-DGCVR  147 (424)
Q Consensus        84 ~~~~~s~-~~~~l~~~~~dg-----------~v~iwd~~~~~~~~--~~~-~~~~~i~~~~~~~~~~~l~s~~~-dg~i~  147 (424)
                      .++++.| ++++++.|+.+.           .+.+||+.+++...  .+. .+.....++++.++++.++.|+. +..+.
T Consensus       189 ~~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~  268 (656)
T 1k3i_A          189 AAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTS  268 (656)
T ss_dssp             SEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEE
T ss_pred             eeEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceE
Confidence            3566777 888888887543           58899998875432  222 13333445778889999999984 45799


Q ss_pred             EEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEe-CC-----CcEEEEecCCCceeeee-----e
Q 014475          148 IWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSAS-ED-----RTCKVWSLLKGRLLRNI-----V  216 (424)
Q Consensus       148 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~-~d-----~~v~iwd~~~~~~~~~~-----~  216 (424)
                      +||..+.         ....+..+.... .-.+++..+++  +.++.|+ .+     ..+.+||..+.+-...-     .
T Consensus       269 ~yd~~t~---------~W~~~~~~~~~R-~~~s~~~~~dg--~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p  336 (656)
T 1k3i_A          269 LYDSSSD---------SWIPGPDMQVAR-GYQSSATMSDG--RVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNP  336 (656)
T ss_dssp             EEEGGGT---------EEEECCCCSSCC-SSCEEEECTTS--CEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGG
T ss_pred             EecCcCC---------ceeECCCCCccc-cccceEEecCC--eEEEEeCcccCCcccccceEeCCCCCcceeCCCccccc
Confidence            9998652         111111111111 11233344455  7888887 34     56999999876533220     0


Q ss_pred             cCcceeEEEECCCCCEEEEEeCCC---------cEEEEEcCCCCCCCCCcCceeeeeecc------cCcCeEEEEecC--
Q 014475          217 FPSVIDAIALDPAEHVFYAGSRDG---------SIYIAALNAESPSTSSYGMHIIGSLSD------HSKAVTCLAYST--  279 (424)
Q Consensus       217 ~~~~i~~~~~~~~~~~l~~~~~dg---------~i~i~d~~~~~~~~~~~~~~~~~~~~~------~~~~i~~~~~~~--  279 (424)
                      ....-....+..++..++.|+.+|         .+..||.......      ........      ....-.++.+..  
T Consensus       337 ~~~~~~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~------~~~~~~~~~~~~~~~~~~~~av~~~~~~  410 (656)
T 1k3i_A          337 MLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDV------KSAGKRQSNRGVAPDAMCGNAVMYDAVK  410 (656)
T ss_dssp             GCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEE------EEEEECEETTEECCCCBTCEEEEEETTT
T ss_pred             cccccccceeecCCceEEEECCCCcEEEecCccceeeeecCCccee------ecCCccccccccCCCCCCCceEeccCCC
Confidence            000000112334566666665554         4567887765310      11111100      011234444443  


Q ss_pred             CCEEEEeCCCC-----------cEEEEeCCCCcEEEEE--eccCCCe-eEEEEEecCceeeeccCC-----------Cce
Q 014475          280 GDLLISGSEDG-----------MVRVWDPITHNIVRMF--RLAKGPV-NNILVVRRPLYLNLGSFS-----------NPH  334 (424)
Q Consensus       280 ~~~l~t~~~dg-----------~i~iwd~~~~~~~~~~--~~~~~~v-~~l~~s~~~~~l~~~~~d-----------~~i  334 (424)
                      +++++.|+.++           .|.+||..+.+-....  ..+.... .+++..|+++.++.|+.+           ..+
T Consensus       411 ~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v  490 (656)
T 1k3i_A          411 GKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTP  490 (656)
T ss_dssp             TEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCC
T ss_pred             CeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCCcccce
Confidence            77888887543           6888998876644433  2233332 344666899999999865           457


Q ss_pred             eeccCCCCC
Q 014475          335 TSSRRHGSQ  343 (424)
Q Consensus       335 ~iw~~~~~~  343 (424)
                      .+||..+.+
T Consensus       491 ~~ydp~t~~  499 (656)
T 1k3i_A          491 EIYVPEQDT  499 (656)
T ss_dssp             EEEEGGGTE
T ss_pred             EEEcCCCCc
Confidence            888876543

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.62  E-value=0.00021  Score=63.36  Aligned_cols=237  Identities=10%  Similarity=-0.061  Sum_probs=141.0

Q ss_pred             CeeEEEECCCCCEEEEecCCCcEEEEEccCcceeeeeccccCCeEEEEEccCCcEE-EEeeCCCcEEEEeCCcccchhcc
Q 014475           82 PIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFL-ISGSEDGCVRIWSLLTVFEECES  160 (424)
Q Consensus        82 ~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l-~s~~~dg~i~iwd~~~~~~~~~~  160 (424)
                      ...|.+..+++ +|+.+. ...|+..++........+. ....+..++|++.++.| ++-...+.|..+++....     
T Consensus        35 ~~~C~~~~~~~-~ll~~~-~~~I~~i~~~g~~~~~~~~-~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~-----  106 (349)
T 3v64_C           35 RRSCKALGPEP-VLLFAN-RIDIRQVLPHRSEYTLLLN-NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSN-----  106 (349)
T ss_dssp             SSCEEESSSCC-EEEEEC-BSCEEEECTTSCCEEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-----
T ss_pred             CCcccccccCc-eeEeec-ccceEEEeCCCCeeEEeec-CCCceEEEEEeccccEEEEEeccCCceEEEecCCCC-----
Confidence            34555656644 444433 3458888876654443333 34458899999755554 454567789999885421     


Q ss_pred             cccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeee-cCcceeEEEECCCCCEEEEEe-C
Q 014475          161 QRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYAGS-R  238 (424)
Q Consensus       161 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~-~  238 (424)
                            ..............+++.+.+. .+.++-...+.|.+.++........+. .......++++|.+..++... .
T Consensus       107 ------~~~~~~~~~~~p~glavd~~~g-~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~  179 (349)
T 3v64_C          107 ------VEEVVSTGLESPGGLAVDWVHD-KLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWG  179 (349)
T ss_dssp             ------CEEEECSSCSCCCEEEEETTTT-EEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECS
T ss_pred             ------ceEEEeCCCCCccEEEEecCCC-eEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccC
Confidence                  1111222223456788886542 566666667889999987544333332 235678999999666555544 4


Q ss_pred             C-CcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CC-EEEEeCCCCcEEEEeCCCCcEEEEEeccCCCeeE
Q 014475          239 D-GSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GD-LLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNN  315 (424)
Q Consensus       239 d-g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~-~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~  315 (424)
                      . +.|..++++....         .......-...+.++++| +. ++++-...+.|..+|+........+......-..
T Consensus       180 ~~~~I~r~~~dG~~~---------~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~g  250 (349)
T 3v64_C          180 NTPRIEASSMDGSGR---------RIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFA  250 (349)
T ss_dssp             SSCEEEEEETTSCSC---------EESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEE
T ss_pred             CCCEEEEEeCCCCCc---------EEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCCCCCceE
Confidence            4 7788888876421         111112334578999997 44 5555556788999998743333333333345577


Q ss_pred             EEEEecCceeeeccCCCceeeccCCCCC
Q 014475          316 ILVVRRPLYLNLGSFSNPHTSSRRHGSQ  343 (424)
Q Consensus       316 l~~s~~~~~l~~~~~d~~i~iw~~~~~~  343 (424)
                      +++ ..+....+-...+.|...+..+++
T Consensus       251 iav-~~~~ly~td~~~~~V~~~~~~~G~  277 (349)
T 3v64_C          251 ITV-FEDSLYWTDWHTKSINSANKFTGK  277 (349)
T ss_dssp             EEE-ETTEEEEEETTTTEEEEEETTTCC
T ss_pred             EEE-ECCEEEEecCCCCeEEEEEccCCC
Confidence            787 345555665666777777754443

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.60  E-value=0.00019  Score=64.57  Aligned_cols=237  Identities=10%  Similarity=-0.074  Sum_probs=143.0

Q ss_pred             eeEEEECCCCCEEEEecCCCcEEEEEccCcceeeeeccccCCeEEEEEccCCcE-EEEeeCCCcEEEEeCCcccchhccc
Q 014475           83 IKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSF-LISGSEDGCVRIWSLLTVFEECESQ  161 (424)
Q Consensus        83 v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~-l~s~~~dg~i~iwd~~~~~~~~~~~  161 (424)
                      -.|.+..+.+ +|+.+.. ..|+..++.......... ....+..++|++.++. +++-...+.|..+++....      
T Consensus        79 ~~C~~~~~~~-~l~~~~~-~~I~~i~~~~~~~~~~~~-~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~------  149 (386)
T 3v65_B           79 RSCKALGPEP-VLLFANR-IDIRQVLPHRSEYTLLLN-NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSN------  149 (386)
T ss_dssp             SCEEECSSCC-EEEEECB-SCEEEECTTSCCCEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCC------
T ss_pred             CeECCccccc-eeEeecC-ccceeeccCCCcEEEEec-CCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCC------
Confidence            3455555533 4444433 568888887665444443 3456889999975544 4555567789999985421      


Q ss_pred             ccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeee-cCcceeEEEECCCCCEEEEEe-CC
Q 014475          162 RASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYAGS-RD  239 (424)
Q Consensus       162 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~-~d  239 (424)
                           ..............+++.+.+. .++++-...+.|.+.++........+. .......++++|.+..|+... ..
T Consensus       150 -----~~~~~~~~~~~p~glavd~~~g-~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~  223 (386)
T 3v65_B          150 -----VEEVVSTGLESPGGLAVDWVHD-KLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGN  223 (386)
T ss_dssp             -----EEEEECSSCSCCCCEEEETTTT-EEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSS
T ss_pred             -----cEEEEeCCCCCccEEEEEeCCC-eEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCC
Confidence                 1111222223456788886542 566666667889999886544333333 235678999999776666554 33


Q ss_pred             -CcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC--CCEEEEeCCCCcEEEEeCCCCcEEEEEeccCCCeeEE
Q 014475          240 -GSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST--GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNI  316 (424)
Q Consensus       240 -g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l  316 (424)
                       +.|..++++...         ........-...+.++++|  +.++++-...+.|..+|+........+.........+
T Consensus       224 ~~~I~r~~~dG~~---------~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~gi  294 (386)
T 3v65_B          224 TPRIEASSMDGSG---------RRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAI  294 (386)
T ss_dssp             SCEEEEEETTSCS---------CEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEECSSCSSEEEE
T ss_pred             CCEEEEEeCCCCC---------cEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEECCCCCceEE
Confidence             678888877642         1111122334578999997  5555565677889999987443333333333455778


Q ss_pred             EEEecCceeeeccCCCceeeccCCCCCC
Q 014475          317 LVVRRPLYLNLGSFSNPHTSSRRHGSQL  344 (424)
Q Consensus       317 ~~s~~~~~l~~~~~d~~i~iw~~~~~~~  344 (424)
                      ++ ..+..+.+-...+.|..++..+++.
T Consensus       295 av-~~~~ly~td~~~~~V~~~~~~~G~~  321 (386)
T 3v65_B          295 TV-FEDSLYWTDWHTKSINSANKFTGKN  321 (386)
T ss_dssp             EE-ETTEEEEEETTTTEEEEEETTTCCS
T ss_pred             EE-ECCEEEEeeCCCCeEEEEECCCCcc
Confidence            88 4455556666777788777544443

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.57  E-value=1.2e-05  Score=79.29  Aligned_cols=195  Identities=12%  Similarity=0.010  Sum_probs=110.9

Q ss_pred             ceEEecceee-cCCCccccCCCC----ceeEEEEECCCC-ceeeeecCCCCeeEEEECCCCCEEEEecCC-----CcEEE
Q 014475           38 GLACVGQRFL-ASSQLREQPSAS----SGSILYWSWSKP-QVEVKSLPAEPIKPIAANSHGTYIAGGGQS-----GDIYM  106 (424)
Q Consensus        38 ~v~~~~~~~~-~~~~~l~~~~~~----~g~i~vwd~~~~-~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-----g~v~i  106 (424)
                      .+....  |+ |||+++|.+...    ...|+++|+.++ +...... ......++|+|||+.|+....+     ..|++
T Consensus       175 ~~~~~~--~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~-~~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~  251 (751)
T 2xe4_A          175 DVMEVK--PAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKV-SGTNGEIVWGPDHTSLFYVTKDETLRENKVWR  251 (751)
T ss_dssp             EEEEEE--ECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCE-EEECSCCEECSSTTEEEEEEECTTCCEEEEEE
T ss_pred             EEeeeE--ecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCccc-cCceeeEEEecCCCEEEEEEECCCCCCCEEEE
Confidence            455566  99 999998855332    246999999987 5321111 1124578899999988877654     25888


Q ss_pred             EEccCccee--eeec-cccCCeEEEEEccCCcEEEEeeC---CCcEEEEeCCcccchhcccccccce--EEeecCCcCce
Q 014475          107 WEVASGRLL--KKWH-AHYRAVTCLVFSEDGSFLISGSE---DGCVRIWSLLTVFEECESQRASHLY--LHSFTGHTLRI  178 (424)
Q Consensus       107 wd~~~~~~~--~~~~-~~~~~i~~~~~~~~~~~l~s~~~---dg~i~iwd~~~~~~~~~~~~~~~~~--~~~~~~~~~~i  178 (424)
                      +++.++...  ..+. ........+.|+||+++|+..+.   ...|.++|+.++.         ...  ...........
T Consensus       252 ~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~---------~~~~~~~l~~~~~~~~  322 (751)
T 2xe4_A          252 HVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGN---------AHNTLEIVRPREKGVR  322 (751)
T ss_dssp             EETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCT---------TCCCEEESSCCCTTCC
T ss_pred             EECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCC---------CCceeEEeecCCCCce
Confidence            888776422  2222 22345678899999998886653   3468888886521         011  11112233344


Q ss_pred             eEEEEEEcCceeEEEEEeCC----CcEEEEecCCC-ceee-eeecCc--ceeEEEECCCCCEEEEEeCCCc--EEEEEc
Q 014475          179 TDIVIGYGGVSATIVSASED----RTCKVWSLLKG-RLLR-NIVFPS--VIDAIALDPAEHVFYAGSRDGS--IYIAAL  247 (424)
Q Consensus       179 ~~~~~~~~~~~~~l~~~~~d----~~v~iwd~~~~-~~~~-~~~~~~--~i~~~~~~~~~~~l~~~~~dg~--i~i~d~  247 (424)
                      .++.|.. +. .+++.+..+    ..|..+|+.++ +... .+.+..  .+..+.+. .+.++++...++.  |+++++
T Consensus       323 ~s~~~~~-g~-~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~-~~~lv~~~~~~g~~~l~~~dl  398 (751)
T 2xe4_A          323 YDVQMHG-TS-HLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVR-SNYLVVAGRRAGLTRIWTMMA  398 (751)
T ss_dssp             EEEEEET-TT-EEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEEC-SSEEEEEEEETTEEEEEEEEC
T ss_pred             EEEeeee-CC-EEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEE-CCEEEEEEEeCCEEEEEEEec
Confidence            4444333 32 444444443    25666777642 2222 233332  45556665 3445556666775  455554

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=98.57  E-value=3.3e-05  Score=70.61  Aligned_cols=240  Identities=7%  Similarity=0.011  Sum_probs=137.3

Q ss_pred             CeeEEEECC-CCCEEEEecCCCcEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEeeC-CC----cEEEEeCCccc
Q 014475           82 PIKPIAANS-HGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSE-DG----CVRIWSLLTVF  155 (424)
Q Consensus        82 ~v~~~~~s~-~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~-dg----~i~iwd~~~~~  155 (424)
                      ....++++| ++..|.++...+.|+.+|+..+...... ........++|++++++|+++.. ++    .+...+.... 
T Consensus       138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~-~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~g~-  215 (430)
T 3tc9_A          138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVY-SGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRESG-  215 (430)
T ss_dssp             CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEE-CCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGGGT-
T ss_pred             CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEe-cCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCCCc-
Confidence            567889998 4555666555578999998776544333 34566889999999996665554 22    2333443210 


Q ss_pred             chhcccccccceEEeecCCcCceeEEEEEE-cCceeEEEEEeCCCcEEEEecCCCceeeeeec--CcceeEEEECCCCCE
Q 014475          156 EECESQRASHLYLHSFTGHTLRITDIVIGY-GGVSATIVSASEDRTCKVWSLLKGRLLRNIVF--PSVIDAIALDPAEHV  232 (424)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~--~~~i~~~~~~~~~~~  232 (424)
                               ......+. .......++++| ++  .++++-..++.|..++...+........  ......++++|++++
T Consensus       216 ---------~~~~~~l~-~~~~p~giavdp~~g--~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~  283 (430)
T 3tc9_A          216 ---------FKVITELT-KGQNCNGAETHPING--ELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNY  283 (430)
T ss_dssp             ---------SCSEEEEE-ECSSCCCEEECTTTC--CEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSE
T ss_pred             ---------eeeeeeec-cCCCceEEEEeCCCC--EEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCE
Confidence                     11001111 122346778888 44  5666666778999999887654333332  245778999999995


Q ss_pred             EEEE-eCCCcEEEEEcCCCCCCCCCcCceeeeee------------cccCcCeE-EEEec--------C-CCEEEEeCCC
Q 014475          233 FYAG-SRDGSIYIAALNAESPSTSSYGMHIIGSL------------SDHSKAVT-CLAYS--------T-GDLLISGSED  289 (424)
Q Consensus       233 l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~------------~~~~~~i~-~~~~~--------~-~~~l~t~~~d  289 (424)
                      |++. ...+.|..++.+........  ...+...            ...-.... .++..        + +.++++-...
T Consensus       284 lyv~d~~~~~I~~~~~d~~~~~~~~--~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n  361 (430)
T 3tc9_A          284 AYIVVVNQHYILRSDYDWKTKRLTT--PYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDREN  361 (430)
T ss_dssp             EEEEETTTTEEEEEEEETTTTEECC--CEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGG
T ss_pred             EEEEECCCCEEEEEeCCcccccccc--eEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCC
Confidence            5554 56778999887643100000  0000000            00011223 44442        3 4555665667


Q ss_pred             CcEEEEeCCCCcEEEEEecc---------C---------CCeeEEEEEec-CceeeeccCCCceeeccC
Q 014475          290 GMVRVWDPITHNIVRMFRLA---------K---------GPVNNILVVRR-PLYLNLGSFSNPHTSSRR  339 (424)
Q Consensus       290 g~i~iwd~~~~~~~~~~~~~---------~---------~~v~~l~~s~~-~~~l~~~~~d~~i~iw~~  339 (424)
                      +.|+.++ .+|... ++.+.         .         ..-..++++|+ +.++++-.....|+..++
T Consensus       362 ~~I~~i~-~~G~v~-~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~  428 (430)
T 3tc9_A          362 HCIRILT-PQGRVT-TFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGY  428 (430)
T ss_dssp             TEEEEEC-TTSEEE-EEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEE
T ss_pred             cEEEEEC-CCCcEE-EEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEcc
Confidence            7888888 456433 33221         1         14578999984 666666556666766554

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=98.55  E-value=0.00045  Score=62.43  Aligned_cols=219  Identities=10%  Similarity=-0.018  Sum_probs=133.9

Q ss_pred             CceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCC----cee-eeecCCCCeeEEE
Q 014475           13 TGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKP----QVE-VKSLPAEPIKPIA   87 (424)
Q Consensus        13 g~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~----~~~-~~~~~~~~v~~~~   87 (424)
                      ..|+..++........+.    ....+..++  |.+.+..|..+....+.|..++++..    ... ...........++
T Consensus        92 ~~I~~i~l~~~~~~~~~~----~~~~~~~l~--~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~gla  165 (400)
T 3p5b_L           92 HEVRKMTLDRSEYTSLIP----NLRNVVALD--TEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLA  165 (400)
T ss_dssp             TEEEEECTTSCSCEEEEC----SCSCEEEEE--EETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEE
T ss_pred             ceeEEEccCCcceeEecc----ccCcceEEe--eeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEE
Confidence            578888888665544433    234567777  99876666666544489999998752    222 2222345678899


Q ss_pred             ECC-CCCEEEEecCCCcEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEee-C-CCcEEEEeCCcccchhcccccc
Q 014475           88 ANS-HGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGS-E-DGCVRIWSLLTVFEECESQRAS  164 (424)
Q Consensus        88 ~s~-~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~-~-dg~i~iwd~~~~~~~~~~~~~~  164 (424)
                      +.+ .+++.++-...+.|.+.+++.......+.........|++.|.+..|..+. . .+.|...++...          
T Consensus       166 vD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~----------  235 (400)
T 3p5b_L          166 VDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV----------  235 (400)
T ss_dssp             EETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSC----------
T ss_pred             EEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCC----------
Confidence            988 555556656678899999875544444444455689999999655555443 2 367888887531          


Q ss_pred             cceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeeec---CcceeEEEECCCCCEEEEEeCCCc
Q 014475          165 HLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVF---PSVIDAIALDPAEHVFYAGSRDGS  241 (424)
Q Consensus       165 ~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~---~~~i~~~~~~~~~~~l~~~~~dg~  241 (424)
                       .........-.....|++++.+. .+.++-...+.|..+|+...........   -.....+++ ..+.++++-...+.
T Consensus       236 -~~~~~~~~~l~~P~glavd~~~~-~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v-~~~~lywtd~~~~~  312 (400)
T 3p5b_L          236 -DIYSLVTENIQWPNGITLDLLSG-RLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAV-FEDKVFWTDIINEA  312 (400)
T ss_dssp             -SCEEEECSSCSCEEEEEEETTTT-EEEEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEE-ETTEEEEEESSSCS
T ss_pred             -ccEEEEECCCCceEEEEEEeCCC-EEEEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEE-eCCEEEEecCCCCe
Confidence             11111222334668899997762 4444445567899999865433322221   233456666 24455556666778


Q ss_pred             EEEEEcCCC
Q 014475          242 IYIAALNAE  250 (424)
Q Consensus       242 i~i~d~~~~  250 (424)
                      |..+|..++
T Consensus       313 V~~~~~~~G  321 (400)
T 3p5b_L          313 IFSANRLTG  321 (400)
T ss_dssp             EEEEESSSC
T ss_pred             EEEEEcCCC
Confidence            888886665

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.54  E-value=0.00011  Score=61.36  Aligned_cols=203  Identities=14%  Similarity=0.131  Sum_probs=128.0

Q ss_pred             eeccccCCeEEEEEccCCcE-EEEeeCCCcEEEEeCCcccchhcccccccceEEeec-CCcCceeEEEEEEcCceeEEEE
Q 014475          117 KWHAHYRAVTCLVFSEDGSF-LISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFT-GHTLRITDIVIGYGGVSATIVS  194 (424)
Q Consensus       117 ~~~~~~~~i~~~~~~~~~~~-l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~l~~  194 (424)
                      .+.+-...+..++|+|+++. +++...++.|...|...            ..+..+. .-....-.+++.+++  .++++
T Consensus        21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~g------------~v~~~i~l~g~~D~EGIa~~~~g--~~~vs   86 (255)
T 3qqz_A           21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTNG------------DLIRTIPLDFVKDLETIEYIGDN--QFVIS   86 (255)
T ss_dssp             ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETTC------------CEEEEEECSSCSSEEEEEECSTT--EEEEE
T ss_pred             ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCCC------------CEEEEEecCCCCChHHeEEeCCC--EEEEE
Confidence            44555678999999997654 45577788888888741            1222221 122456677777665  66666


Q ss_pred             EeCCCcEEEEecCCCce---eeeee-------cCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeee
Q 014475          195 ASEDRTCKVWSLLKGRL---LRNIV-------FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGS  264 (424)
Q Consensus       195 ~~~d~~v~iwd~~~~~~---~~~~~-------~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~  264 (424)
                      .-.++.+.++++.....   +....       .......++++|.++.|+++.......+|.++. .....  .......
T Consensus        87 ~E~~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g-~~~~~--~l~i~~~  163 (255)
T 3qqz_A           87 DERDYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNG-LLSSN--ELHISKD  163 (255)
T ss_dssp             ETTTTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEES-TTCSS--CCEEEEC
T ss_pred             ECCCCcEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcc-cccCC--ceeeecc
Confidence            55677888888765442   22221       233458999999998888877666666666652 11000  0111111


Q ss_pred             --e--cccCcCeEEEEecC--CCEEEEeCCCCcEEEEeCCCCcEEEEEeccCC---------CeeEEEEEecCceeeecc
Q 014475          265 --L--SDHSKAVTCLAYST--GDLLISGSEDGMVRVWDPITHNIVRMFRLAKG---------PVNNILVVRRPLYLNLGS  329 (424)
Q Consensus       265 --~--~~~~~~i~~~~~~~--~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~---------~v~~l~~s~~~~~l~~~~  329 (424)
                        +  ..+...+.+++++|  +++++.......|..+|.. ++.+..+....+         .-..++|.++|+..++ +
T Consensus       164 ~~~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIv-s  241 (255)
T 3qqz_A          164 KALQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIV-S  241 (255)
T ss_dssp             HHHHHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEE-E
T ss_pred             hhhccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEE-c
Confidence              0  11334678999999  7788888888999999965 777776664422         4578999999975555 5


Q ss_pred             CCCceeecc
Q 014475          330 FSNPHTSSR  338 (424)
Q Consensus       330 ~d~~i~iw~  338 (424)
                      +.+.++.+.
T Consensus       242 E~n~~y~f~  250 (255)
T 3qqz_A          242 EPNRFYRFT  250 (255)
T ss_dssp             TTTEEEEEE
T ss_pred             CCceEEEEE
Confidence            655444443

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=98.52  E-value=0.00026  Score=69.51  Aligned_cols=239  Identities=10%  Similarity=-0.051  Sum_probs=144.4

Q ss_pred             eeEEEEECCCCceeeeecCCCCeeEEEECCC-CCEEEEecCCCcEEEEEccCc----ceeeeeccccCCeEEEEEccCC-
Q 014475           61 GSILYWSWSKPQVEVKSLPAEPIKPIAANSH-GTYIAGGGQSGDIYMWEVASG----RLLKKWHAHYRAVTCLVFSEDG-  134 (424)
Q Consensus        61 g~i~vwd~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~v~iwd~~~~----~~~~~~~~~~~~i~~~~~~~~~-  134 (424)
                      ..|+..++..............+..++|.+. +.++++-...+.|+.+++...    .....+.........|++.+.+ 
T Consensus       404 ~~Ir~i~l~~~~~~~l~~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~  483 (791)
T 3m0c_C          404 HEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHS  483 (791)
T ss_dssp             SSEEEECTTSCCCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTT
T ss_pred             cceeEeeccCCcceeeecCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCC
Confidence            4677777776655544455667889999985 445555556678988888653    2233333344567789998766 


Q ss_pred             cEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCC-CcEEEEecCCCceee
Q 014475          135 SFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASED-RTCKVWSLLKGRLLR  213 (424)
Q Consensus       135 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d-~~v~iwd~~~~~~~~  213 (424)
                      +++++-...+.|.+.++...           .....+...-.....|++.|... .++++-... +.|...++.......
T Consensus       484 ~LY~tD~~~~~I~v~~ldG~-----------~~~~l~~~~l~~P~gIaVDp~~g-~LYwtD~g~~~~I~~~~~dG~~~~~  551 (791)
T 3m0c_C          484 NIYWTDSVLGTVSVADTKGV-----------KRKTLFRENGSKPRAIVVDPVHG-FMYWTDWGTPAKIKKGGLNGVDIYS  551 (791)
T ss_dssp             EEEEEETTTTEEEEEETTSS-----------SEEEEEECTTCCEEEEEEETTTT-EEEEEECSSSCEEEEEETTSCCEEE
T ss_pred             cEEEEecCCCeEEEEeCCCC-----------eEEEEEeCCCCCcceEEEecCCC-CEEEecCCCCCeEEEEecCCCceEE
Confidence            45555566788999998541           11111223334578899988752 344443233 678888886544333


Q ss_pred             eee-cCcceeEEEECCCCCEEEEEe-CCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecCCCEEEEeCCCCc
Q 014475          214 NIV-FPSVIDAIALDPAEHVFYAGS-RDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTGDLLISGSEDGM  291 (424)
Q Consensus       214 ~~~-~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~t~~~dg~  291 (424)
                      .+. .-.....|++++.+..|+.+. ..+.|..++++....       ..+......-....+|++..+.++++-...+.
T Consensus       552 lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~-------~~v~~~~~~l~~P~glav~~~~lYwtD~~~~~  624 (791)
T 3m0c_C          552 LVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR-------KTILEDEKRLAHPFSLAVFEDKVFWTDIINEA  624 (791)
T ss_dssp             EECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-------EEEEECTTTTSSEEEEEEETTEEEEEETTTTE
T ss_pred             EEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCce-------EEEecCCCccCCCCEEEEeCCEEEEEECCCCE
Confidence            333 235688999998776666664 456799999876431       11211111223455677655666677777888


Q ss_pred             EEEEeCCCCcEEEEEeccCCCeeEEEE
Q 014475          292 VRVWDPITHNIVRMFRLAKGPVNNILV  318 (424)
Q Consensus       292 i~iwd~~~~~~~~~~~~~~~~v~~l~~  318 (424)
                      |...|..+|+.+..+.........|++
T Consensus       625 I~~~dk~tG~~~~~l~~~l~~P~~i~v  651 (791)
T 3m0c_C          625 IFSANRLTGSDVNLLAENLLSPEDMVL  651 (791)
T ss_dssp             EEEEETTTCCCCEEEECSCSCCCCEEE
T ss_pred             EEEEeCCCCcceEEeecCCCCceeEee
Confidence            999998888777666533333334443

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=98.51  E-value=0.00014  Score=66.48  Aligned_cols=240  Identities=11%  Similarity=0.048  Sum_probs=138.9

Q ss_pred             CeeEEEECCC--CCEEEEecCCCcEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEeeCC---C-cEEEEeCCccc
Q 014475           82 PIKPIAANSH--GTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSED---G-CVRIWSLLTVF  155 (424)
Q Consensus        82 ~v~~~~~s~~--~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d---g-~i~iwd~~~~~  155 (424)
                      ....++|+|+  +..|..+...+.|+.+|+.++...... ........++++++++++++....   . .+...+.... 
T Consensus       140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~-~~~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~~-  217 (433)
T 4hw6_A          140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKT-TNIGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRASG-  217 (433)
T ss_dssp             CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEEC-CCCSCEEEEEECTTCCEEEEECCSCTTSEEEEEECGGGT-
T ss_pred             CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEee-cCCCCccEEEECCCCCEEEEcCCCCcccceEEEEECCCC-
Confidence            4678999984  344555444488999998777655443 345568999999999944443321   1 1333332110 


Q ss_pred             chhcccccccceEEeecCCcCceeEEEEEE-cCceeEEEEEeCCCcEEEEecCCCceeeee-e--cCcceeEEEECCCCC
Q 014475          156 EECESQRASHLYLHSFTGHTLRITDIVIGY-GGVSATIVSASEDRTCKVWSLLKGRLLRNI-V--FPSVIDAIALDPAEH  231 (424)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~-~--~~~~i~~~~~~~~~~  231 (424)
                               ......+. .-.....+++.+ ++  .+.++-..++.|+.+|..++.....+ .  .......++++|+++
T Consensus       218 ---------~~~~~~~~-~~~~P~giavd~~~G--~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~  285 (433)
T 4hw6_A          218 ---------FTERLSLC-NARGAKTCAVHPQNG--KIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGD  285 (433)
T ss_dssp             ---------TCCEEEEE-ECSSBCCCEECTTTC--CEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSS
T ss_pred             ---------eecccccc-ccCCCCEEEEeCCCC--eEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCC
Confidence                     00001111 123345677887 44  55556556788999998877653332 2  122234699999999


Q ss_pred             EEEEE-eCCCcEEEEEcCCCCCCCCCcCceeeee------------ecccCcCeEEEEe---------cC-CCEEEEeCC
Q 014475          232 VFYAG-SRDGSIYIAALNAESPSTSSYGMHIIGS------------LSDHSKAVTCLAY---------ST-GDLLISGSE  288 (424)
Q Consensus       232 ~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~------------~~~~~~~i~~~~~---------~~-~~~l~t~~~  288 (424)
                      .|+++ ...+.|+.++.+........  ...+..            ....-.....+++         .+ ++++++-..
T Consensus       286 ~LYvad~~~~~I~~~~~d~~~~~~~~--~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~  363 (433)
T 4hw6_A          286 WAYIIYNGKHCIYRVDYNRETGKLAV--PYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRD  363 (433)
T ss_dssp             EEEEEETTTTEEEEEEBCTTTCCBCC--CEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETT
T ss_pred             EEEEEeCCCCEEEEEeCCCCCcccCc--EEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECC
Confidence            66555 45678999887642110000  000000            0011234677888         56 677777777


Q ss_pred             CCcEEEEeCCCCcEEEEEeccC------------------CCeeEEEEE-ecCceeeeccCCCceeeccC
Q 014475          289 DGMVRVWDPITHNIVRMFRLAK------------------GPVNNILVV-RRPLYLNLGSFSNPHTSSRR  339 (424)
Q Consensus       289 dg~i~iwd~~~~~~~~~~~~~~------------------~~v~~l~~s-~~~~~l~~~~~d~~i~iw~~  339 (424)
                      .+.|+.++. +|. +.++.+..                  ..-..++++ +++.++++=...+.|+..++
T Consensus       364 n~~I~~~~~-~G~-v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~  431 (433)
T 4hw6_A          364 SHTVRVLTP-EGR-VTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAP  431 (433)
T ss_dssp             TTEEEEECT-TSE-EEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEE
T ss_pred             CCEEEEECC-CCC-EEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEec
Confidence            889999985 564 44433221                  125678898 66766666666666776654

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=98.47  E-value=1.9e-06  Score=83.80  Aligned_cols=238  Identities=11%  Similarity=-0.020  Sum_probs=138.9

Q ss_pred             eeEEEEECCCCceeeeecCCCCeeEEEECCCCCEEEEe-cCCCcEEEEEccC----cceeeeeccccCCeEEEEEcc-CC
Q 014475           61 GSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGG-GQSGDIYMWEVAS----GRLLKKWHAHYRAVTCLVFSE-DG  134 (424)
Q Consensus        61 g~i~vwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg~v~iwd~~~----~~~~~~~~~~~~~i~~~~~~~-~~  134 (424)
                      +.|+..++.+.+..........+..++|++.+..|+.+ ...+.|+.+++..    ......+.........|++.+ .+
T Consensus       386 ~~I~~id~~~~~~~~~~~~~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g  465 (699)
T 1n7d_A          386 HEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHS  465 (699)
T ss_dssp             TC-CEECTTSCCEECCSCCCTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSS
T ss_pred             cceEEEeCCCCcceeeeccCcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCC
Confidence            57888888776655444445567899999876666555 4457899999875    222222222223356688875 45


Q ss_pred             cEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEe-CC-CcEEEEecCCCcee
Q 014475          135 SFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSAS-ED-RTCKVWSLLKGRLL  212 (424)
Q Consensus       135 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~-~d-~~v~iwd~~~~~~~  212 (424)
                      +++++-...+.|.++++....           ....+.........+++.|.+  ..|+.+. .. +.|..+++.... .
T Consensus       466 ~LY~tD~~~~~I~v~d~dg~~-----------~~~l~~~~~~~P~giavDp~~--g~ly~td~~~~~~I~~~~~dG~~-~  531 (699)
T 1n7d_A          466 NIYWTDSVLGTVSVADTKGVK-----------RKTLFREQGSKPRAIVVDPVH--GFMYWTDWGTPAKIKKGGLNGVD-I  531 (699)
T ss_dssp             BCEECCTTTSCEEEEBSSSCC-----------EEEECCCSSCCCCCEECCSSS--SCCEECCCSSSCCEEBCCSSSCC-C
T ss_pred             cEEEEeccCCeEEEEecCCCc-----------eEEEEeCCCCCcceEEEccCC--CcEEEcccCCCCeEEEEeCCCCC-e
Confidence            555555567889999985411           111112222345678888765  3444333 22 678888775432 2


Q ss_pred             eeee--cCcceeEEEECCCCCEEEEE-eCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecCCCEEEEeCCC
Q 014475          213 RNIV--FPSVIDAIALDPAEHVFYAG-SRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTGDLLISGSED  289 (424)
Q Consensus       213 ~~~~--~~~~i~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~t~~~d  289 (424)
                      ..+.  .-...+.|+++|++..|+.+ ...+.|..+++.....       ..+............|++..+.++++....
T Consensus       532 ~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~-------~~~~~~~~~~~~P~glavd~~~lywtd~~~  604 (699)
T 1n7d_A          532 YSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR-------KTILEDEKRLAHPFSLAVFEDKVFWTDIIN  604 (699)
T ss_dssp             CEESCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCC-------EEECCCSSSCSSCCCCEEETTEEEEECSTT
T ss_pred             eEEEeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCce-------EEEEecCCcCCCceEeEEECCEEEEEeCCC
Confidence            2221  22456789999976555554 4567899999875321       112111111223445555556677777778


Q ss_pred             CcEEEEeCCCCcEEEEEeccCCCeeEEEEE
Q 014475          290 GMVRVWDPITHNIVRMFRLAKGPVNNILVV  319 (424)
Q Consensus       290 g~i~iwd~~~~~~~~~~~~~~~~v~~l~~s  319 (424)
                      +.|..++..+++.+..+.........|++.
T Consensus       605 ~~V~~~d~~~G~~~~~i~~~~~~P~~i~v~  634 (699)
T 1n7d_A          605 EAIFSANRLTGSDVNLLAENLLSPEDMVLF  634 (699)
T ss_dssp             TCEEEEETTTEEEEECCCTTCSSCCCCCBC
T ss_pred             CeEEEEEccCCCceEEeecCCCCCcEEEEe
Confidence            899999998898887775433334444443

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=98.47  E-value=0.00015  Score=62.83  Aligned_cols=201  Identities=14%  Similarity=0.269  Sum_probs=130.0

Q ss_pred             CCCEEEEecCCCcEEEEEccCcceeeeeccccCCeEEEEEccC----CcE--EE--EeeC--CCcEEEEeCCcccchhcc
Q 014475           91 HGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSED----GSF--LI--SGSE--DGCVRIWSLLTVFEECES  160 (424)
Q Consensus        91 ~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~----~~~--l~--s~~~--dg~i~iwd~~~~~~~~~~  160 (424)
                      ...+++.....+-+.+||+ +|+.++.+..  +.++.+..-|+    ++.  ++  +.-.  +.+|++|++.....    
T Consensus        39 ~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~----  111 (355)
T 3amr_A           39 QNSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNG----  111 (355)
T ss_dssp             GGCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTC----
T ss_pred             CccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCC----
Confidence            3455555566778999999 8888888764  56777777662    222  23  3333  57899997732110    


Q ss_pred             cccccceEEeec-------CCcCceeEEEE--EEcCceeEEEEEeCCCcEEEEec-------CCCceeeeeecCcceeEE
Q 014475          161 QRASHLYLHSFT-------GHTLRITDIVI--GYGGVSATIVSASEDRTCKVWSL-------LKGRLLRNIVFPSVIDAI  224 (424)
Q Consensus       161 ~~~~~~~~~~~~-------~~~~~i~~~~~--~~~~~~~~l~~~~~d~~v~iwd~-------~~~~~~~~~~~~~~i~~~  224 (424)
                            .+..+.       .....+..+++  ++.....++++...+|.+..|++       .+.+.++.+.....+..+
T Consensus       112 ------~l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lgsq~Egc  185 (355)
T 3amr_A          112 ------TLQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMNSQTEGM  185 (355)
T ss_dssp             ------CEEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECSSCEEEE
T ss_pred             ------ceeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCCCCcceE
Confidence                  122221       11155667777  44332246888888999999998       345677888888899999


Q ss_pred             EECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeec-cc-CcCeEEEEec--C-CC-EEEEeC-CCCcEEEEeC
Q 014475          225 ALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLS-DH-SKAVTCLAYS--T-GD-LLISGS-EDGMVRVWDP  297 (424)
Q Consensus       225 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~-~~-~~~i~~~~~~--~-~~-~l~t~~-~dg~i~iwd~  297 (424)
                      ...+....|+++-.+..|..++.+......    ...+.... ++ ...+..|++-  + ++ +|++++ .++++.+||.
T Consensus       186 vvDd~~g~Lyv~eEd~GIw~~da~p~~~~~----~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr  261 (355)
T 3amr_A          186 AADDEYGRLYIAEEDEAIWKFSAEPDGGSN----GTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDR  261 (355)
T ss_dssp             EEETTTTEEEEEETTTEEEEEECSTTSCSC----CEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEES
T ss_pred             EEcCCCCeEEEecccceEEEEeCCcCCCCC----ceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEEC
Confidence            999999999999998777666655332110    13333331 22 2467888874  3 33 565555 6779999999


Q ss_pred             C-CCcEEEEEec
Q 014475          298 I-THNIVRMFRL  308 (424)
Q Consensus       298 ~-~~~~~~~~~~  308 (424)
                      . +.+.+..|.-
T Consensus       262 ~~~~~~vg~f~I  273 (355)
T 3amr_A          262 QGKNKYVADFRI  273 (355)
T ss_dssp             STTCCEEEEEEE
T ss_pred             CCCCcEEEEEEe
Confidence            6 6777777763

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=98.44  E-value=0.00052  Score=59.80  Aligned_cols=220  Identities=10%  Similarity=0.004  Sum_probs=131.7

Q ss_pred             CceEEEeCCCCc--eEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCce--eeeecCCCCeeEEEE
Q 014475           13 TGIGCWDLESGA--EQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQV--EVKSLPAEPIKPIAA   88 (424)
Q Consensus        13 g~i~vwd~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~--~~~~~~~~~v~~~~~   88 (424)
                      ..|+..|+....  ....+..    ......++  |.+.+..|..+....+.|..++.+....  ............+++
T Consensus        13 ~~I~~i~l~~~~~~~~~~~~~----~~~~~~ld--~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glav   86 (318)
T 3sov_A           13 RDLRLVDATNGKENATIVVGG----LEDAAAVD--FVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLAC   86 (318)
T ss_dssp             EEEEEEETTCTTSCCEEEEEE----EEEEEEEE--EEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEE
T ss_pred             CeEEEEECCCCceEEEEEecC----CCccEEEE--EEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEE
Confidence            579999998663  1111211    12345666  9987666665544448999999876632  122223345678899


Q ss_pred             CC-CCCEEEEecCCCcEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEee--CCCcEEEEeCCcccchhccccccc
Q 014475           89 NS-HGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGS--EDGCVRIWSLLTVFEECESQRASH  165 (424)
Q Consensus        89 s~-~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~  165 (424)
                      .+ ++++.++-...+.|.+++++.......+.........+++.|.+..|..+.  ..+.|...++...         ..
T Consensus        87 d~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~---------~~  157 (318)
T 3sov_A           87 DWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGS---------SR  157 (318)
T ss_dssp             ETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSC---------SC
T ss_pred             EcCCCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCC---------Ce
Confidence            87 455555656677899999865433333334456678999998655555544  2567888887431         11


Q ss_pred             ceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeee-cCcceeEEEECCCCCEEEEEeCCCcEEE
Q 014475          166 LYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYAGSRDGSIYI  244 (424)
Q Consensus       166 ~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i  244 (424)
                        .......-...+.+++++++. .+.++=+..+.|..+|+.......... .......+++. .+.++++-...+.|..
T Consensus       158 --~~~~~~~l~~Pnglavd~~~~-~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~glav~-~~~lywtd~~~~~V~~  233 (318)
T 3sov_A          158 --FIIINSEIYWPNGLTLDYEEQ-KLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLF-EDILYWTDWSTHSILA  233 (318)
T ss_dssp             --EEEECSSCSCEEEEEEETTTT-EEEEEETTTTEEEEEETTSCSCEEEECSCCSCEEEEEEE-TTEEEEEETTTTEEEE
T ss_pred             --EEEEECCCCCccEEEEeccCC-EEEEEECCCCEEEEEcCCCCceEEEecCCCCCceEEEEe-CCEEEEEecCCCeEEE
Confidence              111122233557899998652 455555567889999986433222222 23345566664 3445555556778888


Q ss_pred             EEcCCCC
Q 014475          245 AALNAES  251 (424)
Q Consensus       245 ~d~~~~~  251 (424)
                      ++..++.
T Consensus       234 ~~~~~G~  240 (318)
T 3sov_A          234 CNKYTGE  240 (318)
T ss_dssp             EETTTCC
T ss_pred             EECCCCC
Confidence            8886653

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=98.42  E-value=0.00078  Score=59.06  Aligned_cols=269  Identities=9%  Similarity=0.021  Sum_probs=143.3

Q ss_pred             CceEEecceeecCCCccccCCCCceeEEEEECCCCc-eeeeec----CCCCeeEEEECCCCCEEEEecCCCcEEEEEccC
Q 014475           37 HGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQ-VEVKSL----PAEPIKPIAANSHGTYIAGGGQSGDIYMWEVAS  111 (424)
Q Consensus        37 ~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~-~~~~~~----~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~  111 (424)
                      ..+.++.  |.+++..+++ +.. |.|. ...+.++ -.....    ....+.++.|.+ +..+++ +..|.|.. ....
T Consensus        36 ~~~~~v~--~~~~~~~~~~-G~~-g~i~-~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~-~~~~~~-g~~g~i~~-S~Dg  107 (327)
T 2xbg_A           36 ATILDMS--FIDRHHGWLV-GVN-ATLM-ETRDGGQTWEPRTLVLDHSDYRFNSVSFQG-NEGWIV-GEPPIMLH-TTDG  107 (327)
T ss_dssp             SCEEEEE--ESSSSCEEEE-ETT-TEEE-EESSTTSSCEECCCCCSCCCCEEEEEEEET-TEEEEE-EETTEEEE-ESST
T ss_pred             CcEEEEE--ECCCCcEEEE-cCC-CeEE-EeCCCCCCCeECCCCCCCCCccEEEEEecC-CeEEEE-ECCCeEEE-ECCC
Confidence            3566776  7777776664 444 6553 3333332 111111    244789999986 444444 55664443 2233


Q ss_pred             cceeeeec---cccCCeEEEEEccCCcEEEEeeCCCcEEE-EeCCcccchhcccccccceEEeecCCcCceeEEEEEEcC
Q 014475          112 GRLLKKWH---AHYRAVTCLVFSEDGSFLISGSEDGCVRI-WSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGG  187 (424)
Q Consensus       112 ~~~~~~~~---~~~~~i~~~~~~~~~~~l~s~~~dg~i~i-wd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  187 (424)
                      |+.-....   .+...+..+.+.+++..++++ .+|.|.. .|-            ..............+..+.+.+++
T Consensus       108 G~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~g~v~~S~Dg------------G~tW~~~~~~~~~~~~~~~~~~~~  174 (327)
T 2xbg_A          108 GQSWSQIPLDPKLPGSPRLIKALGNGSAEMIT-NVGAIYRTKDS------------GKNWQALVQEAIGVMRNLNRSPSG  174 (327)
T ss_dssp             TSSCEECCCCTTCSSCEEEEEEEETTEEEEEE-TTCCEEEESST------------TSSEEEEECSCCCCEEEEEECTTS
T ss_pred             CCCceECccccCCCCCeEEEEEECCCCEEEEe-CCccEEEEcCC------------CCCCEEeecCCCcceEEEEEcCCC
Confidence            33322221   233557788887777666555 4554422 221            111222223445577888887765


Q ss_pred             ceeEEEEEeCCCcEEEEec--CCCceeeeeecCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeee
Q 014475          188 VSATIVSASEDRTCKVWSL--LKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSL  265 (424)
Q Consensus       188 ~~~~l~~~~~d~~v~iwd~--~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~  265 (424)
                        ..++.+...+..+-.|-  .+-+.+. ......+..+.+.+++..+ +.+.+|.+++.+.+.+..      +..+..-
T Consensus       175 --~~~~~g~~G~~~~S~d~gG~tW~~~~-~~~~~~~~~~~~~~~g~~~-~~~~~G~~~~s~~D~G~t------W~~~~~~  244 (327)
T 2xbg_A          175 --EYVAVSSRGSFYSTWEPGQTAWEPHN-RTTSRRLHNMGFTPDGRLW-MIVNGGKIAFSDPDNSEN------WGELLSP  244 (327)
T ss_dssp             --CEEEEETTSSEEEEECTTCSSCEEEE-CCSSSCEEEEEECTTSCEE-EEETTTEEEEEETTEEEE------ECCCBCT
T ss_pred             --cEEEEECCCcEEEEeCCCCCceeECC-CCCCCccceeEECCCCCEE-EEeCCceEEEecCCCCCe------eEeccCC
Confidence              56655544333333442  2222221 1245678889999988755 455678777764332210      1111100


Q ss_pred             -cccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCCCcEEEEEec---cCCCeeEEEEEecCceeeeccCCCceeeccC
Q 014475          266 -SDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRL---AKGPVNNILVVRRPLYLNLGSFSNPHTSSRR  339 (424)
Q Consensus       266 -~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~~~~~~~---~~~~v~~l~~s~~~~~l~~~~~d~~i~iw~~  339 (424)
                       ..+...+.++.+.+ +.+++++. +|.| ++....|+.-..+..   ....+.++.|.+++. +++++.+|.|.-++-
T Consensus       245 ~~~~~~~~~~v~~~~~~~~~~~g~-~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~~-~~~~G~~G~i~~~~~  320 (327)
T 2xbg_A          245 LRRNSVGFLDLAYRTPNEVWLAGG-AGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPDQ-GFILGQKGILLRYVT  320 (327)
T ss_dssp             TSSCCSCEEEEEESSSSCEEEEES-TTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEETTE-EEEECSTTEEEEECC
T ss_pred             cccCCcceEEEEecCCCEEEEEeC-CCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEECCCc-eEEEcCCceEEEEcC
Confidence             01224578888887 66666655 6766 445455554444442   245788999986665 555567887766553

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.41  E-value=2.1e-05  Score=77.43  Aligned_cols=194  Identities=14%  Similarity=0.119  Sum_probs=108.6

Q ss_pred             CeeEEEEC-CCCCEEEEecC-C----CcEEEEEccCc-ceeee-eccccCCeEEEEEccCCcEEEEeeCC-----CcEEE
Q 014475           82 PIKPIAAN-SHGTYIAGGGQ-S----GDIYMWEVASG-RLLKK-WHAHYRAVTCLVFSEDGSFLISGSED-----GCVRI  148 (424)
Q Consensus        82 ~v~~~~~s-~~~~~l~~~~~-d----g~v~iwd~~~~-~~~~~-~~~~~~~i~~~~~~~~~~~l~s~~~d-----g~i~i  148 (424)
                      .+...+|| |||++||.+.. +    ..|+++|+.++ +.+.. +..   ....+.|+||++.|+....+     ..|.+
T Consensus       175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~~---~~~~~~WspDg~~l~y~~~d~~~~~~~v~~  251 (751)
T 2xe4_A          175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVSG---TNGEIVWGPDHTSLFYVTKDETLRENKVWR  251 (751)
T ss_dssp             EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEEE---ECSCCEECSSTTEEEEEEECTTCCEEEEEE
T ss_pred             EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCccccC---ceeeEEEecCCCEEEEEEECCCCCCCEEEE
Confidence            57889999 99998886533 2    24999999988 63321 211   13468899999888877665     25788


Q ss_pred             EeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeC---CCcEEEEecCCCc-ee--eeee--cCcc
Q 014475          149 WSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASE---DRTCKVWSLLKGR-LL--RNIV--FPSV  220 (424)
Q Consensus       149 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~---d~~v~iwd~~~~~-~~--~~~~--~~~~  220 (424)
                      +++.++..       ....+... ........+.|++++  ++|+..+.   ...|.++|+.++. ..  ..+.  ....
T Consensus       252 ~~lgt~~~-------~~~lv~~~-~~~~~~~~~~~SpDg--~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~  321 (751)
T 2xe4_A          252 HVMGKLQS-------EDVCLYEE-HNPLFSAFMYKAADT--NTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGV  321 (751)
T ss_dssp             EETTSCGG-------GCEEEEEC-CCTTCEEEEEECTTS--SEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTC
T ss_pred             EECCCCch-------hcEEEEec-CCCceEEEEEECCCC--CEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCc
Confidence            88865221       11112111 222345677899998  66655442   3458888987752 12  2222  2334


Q ss_pred             eeEEEECCCCCEEEEEeCC--C--cEEEEEcCCCCCCCCCcCceeeee-ecccCc--CeEEEEecCCCEEEEeCCCCc--
Q 014475          221 IDAIALDPAEHVFYAGSRD--G--SIYIAALNAESPSTSSYGMHIIGS-LSDHSK--AVTCLAYSTGDLLISGSEDGM--  291 (424)
Q Consensus       221 i~~~~~~~~~~~l~~~~~d--g--~i~i~d~~~~~~~~~~~~~~~~~~-~~~~~~--~i~~~~~~~~~~l~t~~~dg~--  291 (424)
                      ...+.|+..+.+++....+  +  .|..+++.+...      +.   . +..+..  .+..+.+..+.++++...++.  
T Consensus       322 ~~s~~~~~g~~l~~~t~~~~a~~~~L~~~d~~~~~~------~~---~~li~~~~~~~l~~~~~~~~~lv~~~~~~g~~~  392 (751)
T 2xe4_A          322 RYDVQMHGTSHLVILTNEGGAVNHKLLIAPRGQPSD------WS---HVLVDHSEDVFMESIAVRSNYLVVAGRRAGLTR  392 (751)
T ss_dssp             CEEEEEETTTEEEEEECTTTCTTCEEEEEETTSTTC------CC---CEEECCCSSEEEEEEEECSSEEEEEEEETTEEE
T ss_pred             eEEEeeeeCCEEEEEeCCCCCCCcEEEEEcCCCccc------ce---eeEECCCCCcEEEEEEEECCEEEEEEEeCCEEE
Confidence            4455544444444444443  2  566666654210      11   1 112222  345555554556666677775  


Q ss_pred             EEEEeC
Q 014475          292 VRVWDP  297 (424)
Q Consensus       292 i~iwd~  297 (424)
                      |.++++
T Consensus       393 l~~~dl  398 (751)
T 2xe4_A          393 IWTMMA  398 (751)
T ss_dssp             EEEEEC
T ss_pred             EEEEec
Confidence            555565

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=98.40  E-value=0.00017  Score=65.87  Aligned_cols=232  Identities=7%  Similarity=0.023  Sum_probs=126.6

Q ss_pred             EeecCCCCCceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCCCc----eeEEEEECCCCcee-eeecC
Q 014475            5 IASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASS----GSILYWSWSKPQVE-VKSLP   79 (424)
Q Consensus         5 lat~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~----g~i~vwd~~~~~~~-~~~~~   79 (424)
                      |..+. ..+.|+.+|...+...... .   .......++  ++++++.|.++...+    ..+.+.+.+..... .....
T Consensus       152 Lyv~d-~~~~I~~id~~~~~v~~~~-~---~~~~P~~ia--~d~~G~~lyvad~~~~~~~~~v~~~~~~g~~~~~~~l~~  224 (430)
T 3tc9_A          152 LYLVG-EQHPTRLIDFEKEYVSTVY-S---GLSKVRTIC--WTHEADSMIITNDQNNNDRPNNYILTRESGFKVITELTK  224 (430)
T ss_dssp             EEEEE-BTEEEEEEETTTTEEEEEE-C---CCSCEEEEE--ECTTSSEEEEEECCSCTTSEEEEEEEGGGTSCSEEEEEE
T ss_pred             EEEEe-CCCcEEEEECCCCEEEEEe-c---CCCCcceEE--EeCCCCEEEEEeCCCCcccceEEEEeCCCceeeeeeecc
Confidence            44444 3378999998866544333 2   223456666  999999666554321    23444443322110 11112


Q ss_pred             CCCeeEEEECC-CCCEEEEecCCCcEEEEEccCcceeeeecc-ccCCeEEEEEccCCcEE-EEeeCCCcEEEEeCCcccc
Q 014475           80 AEPIKPIAANS-HGTYIAGGGQSGDIYMWEVASGRLLKKWHA-HYRAVTCLVFSEDGSFL-ISGSEDGCVRIWSLLTVFE  156 (424)
Q Consensus        80 ~~~v~~~~~s~-~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l-~s~~~dg~i~iwd~~~~~~  156 (424)
                      ......++++| ++.++++-..++.|..++...+........ .......++|+|++++| ++-...+.|..++......
T Consensus       225 ~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d~~~~  304 (430)
T 3tc9_A          225 GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYDWKTK  304 (430)
T ss_dssp             CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTT
T ss_pred             CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEEEEEeCCcccc
Confidence            34567889999 777777766778999999876654222221 22457899999999954 4545677899987643100


Q ss_pred             hhcccccccceEEee------------cCCcCcee-EEEEEE------cCceeEEEEEeCCCcEEEEecCCCceeeeeec
Q 014475          157 ECESQRASHLYLHSF------------TGHTLRIT-DIVIGY------GGVSATIVSASEDRTCKVWSLLKGRLLRNIVF  217 (424)
Q Consensus       157 ~~~~~~~~~~~~~~~------------~~~~~~i~-~~~~~~------~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~  217 (424)
                      ...    ....+...            ...-.... .++..+      +..+.+.++-...+.|+.++. +++.......
T Consensus       305 ~~~----~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~i~~-~G~v~~~~g~  379 (430)
T 3tc9_A          305 RLT----TPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRILTP-QGRVTTFAGR  379 (430)
T ss_dssp             EEC----CCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEEECT-TSEEEEEEEC
T ss_pred             ccc----ceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEEEECC-CCcEEEEEeC
Confidence            000    00000000            00011122 344432      122355555556678888883 4543333221


Q ss_pred             ---------C---------cceeEEEECCC-CCEEEEEeCCCcEEEEEcC
Q 014475          218 ---------P---------SVIDAIALDPA-EHVFYAGSRDGSIYIAALN  248 (424)
Q Consensus       218 ---------~---------~~i~~~~~~~~-~~~l~~~~~dg~i~i~d~~  248 (424)
                               .         .....++++|+ +.++++-..++.|+.++++
T Consensus       380 g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e  429 (430)
T 3tc9_A          380 GSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGYE  429 (430)
T ss_dssp             CTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred             CCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEccC
Confidence                     1         14678889885 5555554556677777653

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=98.39  E-value=0.00013  Score=66.60  Aligned_cols=234  Identities=11%  Similarity=0.051  Sum_probs=134.0

Q ss_pred             eEEecceeecC--CCccccCCCCceeEEEEECCCCceeeeecCCCCeeEEEECCCCCEEEEecCC---C-cEEEEEccCc
Q 014475           39 LACVGQRFLAS--SQLREQPSASSGSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQS---G-DIYMWEVASG  112 (424)
Q Consensus        39 v~~~~~~~~~~--~~~l~~~~~~~g~i~vwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---g-~v~iwd~~~~  112 (424)
                      ...++  +.|+  ...|.++... +.|+.++..++..............++++++|+++++....   . .+...+...+
T Consensus       141 P~gva--vd~~s~~g~Lyv~D~~-~~I~~id~~~g~v~~~~~~~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~~  217 (433)
T 4hw6_A          141 IWRMM--FDPNSNYDDLYWVGQR-DAFRHVDFVNQYVDIKTTNIGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRASG  217 (433)
T ss_dssp             CCEEE--ECTTTTTCEEEEECBT-SCEEEEETTTTEEEEECCCCSCEEEEEECTTCCEEEEECCSCTTSEEEEEECGGGT
T ss_pred             CceEE--EccccCCCEEEEEeCC-CCEEEEECCCCEEEEeecCCCCccEEEECCCCCEEEEcCCCCcccceEEEEECCCC
Confidence            34555  8874  3444454444 78999998877766555556678999999999955543311   1 1333333222


Q ss_pred             cee-eeeccccCCeEEEEEcc-CCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCcee
Q 014475          113 RLL-KKWHAHYRAVTCLVFSE-DGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSA  190 (424)
Q Consensus       113 ~~~-~~~~~~~~~i~~~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  190 (424)
                      ... ..+. .......++++| ++.++++-..++.|+.+|..++...        ..+... +....-..+++++++  +
T Consensus       218 ~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~--------~~~~~~-~~~~~~~~ia~dpdG--~  285 (433)
T 4hw6_A          218 FTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLT--------EEEVMM-DTKGSNFHIVWHPTG--D  285 (433)
T ss_dssp             TCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEE--------EEEEEC-SCCSSCEEEEECTTS--S
T ss_pred             eecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEE--------EEEecc-CCCCCcccEEEeCCC--C
Confidence            110 1121 234456789999 7776666667788999998642110        011111 111223468999988  5


Q ss_pred             -EEEEEeCCCcEEEEecC--CCcee--eeeec----------------CcceeEEEE---------CCCCCEEEEEeCCC
Q 014475          191 -TIVSASEDRTCKVWSLL--KGRLL--RNIVF----------------PSVIDAIAL---------DPAEHVFYAGSRDG  240 (424)
Q Consensus       191 -~l~~~~~d~~v~iwd~~--~~~~~--~~~~~----------------~~~i~~~~~---------~~~~~~l~~~~~dg  240 (424)
                       ++++-...+.|..++..  ++...  ..+..                -.....+++         .+++.++++-...+
T Consensus       286 ~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~  365 (433)
T 4hw6_A          286 WAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSH  365 (433)
T ss_dssp             EEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTT
T ss_pred             EEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCC
Confidence             45555567889998865  23211  11110                123567888         67777777666778


Q ss_pred             cEEEEEcCCCCCCCCCcCceeeeeecc------------------cCcCeEEEEec-C-CCEEEEeCCCCcEEEEeCC
Q 014475          241 SIYIAALNAESPSTSSYGMHIIGSLSD------------------HSKAVTCLAYS-T-GDLLISGSEDGMVRVWDPI  298 (424)
Q Consensus       241 ~i~i~d~~~~~~~~~~~~~~~~~~~~~------------------~~~~i~~~~~~-~-~~~l~t~~~dg~i~iwd~~  298 (424)
                      .|+.++... .          +..+.+                  .-.....++++ + +.++++-..++.|+.++++
T Consensus       366 ~I~~~~~~G-~----------v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e  432 (433)
T 4hw6_A          366 TVRVLTPEG-R----------VTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE  432 (433)
T ss_dssp             EEEEECTTS-E----------EEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred             EEEEECCCC-C----------EEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence            898887532 1          111110                  11346778888 4 5555555566777777653

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=98.33  E-value=0.0014  Score=62.85  Aligned_cols=224  Identities=6%  Similarity=-0.080  Sum_probs=140.8

Q ss_pred             eeEEEEECCCCceeeee--cCCCCeeEEEECCCCCEE-EEecCCCcEEEEEccCcceeeeeccccCCeEEEEEccC-CcE
Q 014475           61 GSILYWSWSKPQVEVKS--LPAEPIKPIAANSHGTYI-AGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSED-GSF  136 (424)
Q Consensus        61 g~i~vwd~~~~~~~~~~--~~~~~v~~~~~s~~~~~l-~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~~  136 (424)
                      +.|+..++++.......  ..-..+..++|++.+..| ++-..++.|..+++........+.........+++.+. +++
T Consensus        15 ~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlAvD~~~~~L   94 (628)
T 4a0p_A           15 ADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMAVDWLGKNL   94 (628)
T ss_dssp             TEEEEEESSCTTCEEECCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEE
T ss_pred             CcEEEEECCCCCcceEEEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEEEEeCCCEE
Confidence            68899998865543222  223578899999865554 45556788999998655443333333345778999875 445


Q ss_pred             EEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEe--CCCcEEEEecCCCceeee
Q 014475          137 LISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSAS--EDRTCKVWSLLKGRLLRN  214 (424)
Q Consensus       137 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~--~d~~v~iwd~~~~~~~~~  214 (424)
                      +++-...+.|.+.++....         ...+  ....-.....+++.|..  ..|+.+.  ..+.|...++........
T Consensus        95 Y~tD~~~~~I~v~~~dG~~---------~~~l--~~~~l~~P~~iavdp~~--G~lY~tD~g~~~~I~r~~~dG~~~~~l  161 (628)
T 4a0p_A           95 YWADTGTNRIEVSKLDGQH---------RQVL--VWKDLDSPRALALDPAE--GFMYWTEWGGKPKIDRAAMDGSERTTL  161 (628)
T ss_dssp             EEEETTTTEEEEEETTSTT---------CEEE--ECSSCCCEEEEEEETTT--TEEEEEECSSSCEEEEEETTSCSCEEE
T ss_pred             EEEECCCCEEEEEecCCCc---------EEEE--EeCCCCCcccEEEccCC--CeEEEeCCCCCCEEEEEeCCCCceEEE
Confidence            5555567789999985421         1111  11233456789998854  3444443  256788888765443333


Q ss_pred             eecCcceeEEEECCCCCEEEEEe-CCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecCCCEEEEeCCCCcEE
Q 014475          215 IVFPSVIDAIALDPAEHVFYAGS-RDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTGDLLISGSEDGMVR  293 (424)
Q Consensus       215 ~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~t~~~dg~i~  293 (424)
                      ...-.....+++++++..|+.+. ..+.|..+|++....       +   .+.........+++..+.++++-...+.|.
T Consensus       162 ~~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~-------~---v~~~~l~~P~glav~~~~ly~tD~~~~~I~  231 (628)
T 4a0p_A          162 VPNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR-------E---VIADDLPHPFGLTQYQDYIYWTDWSRRSIE  231 (628)
T ss_dssp             ECSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-------E---EEEECCSCEEEEEEETTEEEEEETTTTEEE
T ss_pred             ECCCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCce-------E---EeeccCCCceEEEEECCEEEEecCCCCEEE
Confidence            33445678999999776666654 567899999876431       1   122233345677776666666766788999


Q ss_pred             EEeCCCCcEEEEEe
Q 014475          294 VWDPITHNIVRMFR  307 (424)
Q Consensus       294 iwd~~~~~~~~~~~  307 (424)
                      ..|..+++....+.
T Consensus       232 ~~dk~tg~~~~~l~  245 (628)
T 4a0p_A          232 RANKTSGQNRTIIQ  245 (628)
T ss_dssp             EEETTTCCSCEEEE
T ss_pred             EEECCCCCceEEEe
Confidence            99987776554443

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=98.27  E-value=0.0034  Score=60.09  Aligned_cols=181  Identities=10%  Similarity=0.011  Sum_probs=102.5

Q ss_pred             CceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCce--eeeecCCCCeeEEEECC
Q 014475           13 TGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQV--EVKSLPAEPIKPIAANS   90 (424)
Q Consensus        13 g~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~--~~~~~~~~~v~~~~~s~   90 (424)
                      ..|+.-|+.......++.  .........++  |++.+..+..+....+.|..++.+....  ............+++.+
T Consensus        18 ~~I~~i~~~~~~~~~~~~--~~~~~~~~~ld--~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~   93 (619)
T 3s94_A           18 RDLRLVDATNGKENATIV--VGGLEDAAAVD--FVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDW   93 (619)
T ss_dssp             SBEEEECCC-----------CBCCSCEEEEE--EETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEET
T ss_pred             ccEEEEeCCCCcceEEEE--EcCCCceEEEE--EEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEe
Confidence            679999987543111111  11224456777  9987777766655448899999876532  22222235789999998


Q ss_pred             CC-CEEEEecCCCcEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEeeC--CCcEEEEeCCcccchhcccccccce
Q 014475           91 HG-TYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSE--DGCVRIWSLLTVFEECESQRASHLY  167 (424)
Q Consensus        91 ~~-~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~--dg~i~iwd~~~~~~~~~~~~~~~~~  167 (424)
                      .+ ++.++-...+.|.+.++........+.........|++.|.+..|..+..  .+.|...++...         ..  
T Consensus        94 ~~~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~---------~~--  162 (619)
T 3s94_A           94 LGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGS---------SR--  162 (619)
T ss_dssp             TTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSC---------SC--
T ss_pred             cCCEEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCC---------ce--
Confidence            54 45555566788999998654333333344456788999986555544442  356666666431         11  


Q ss_pred             EEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCC
Q 014475          168 LHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKG  209 (424)
Q Consensus       168 ~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~  209 (424)
                      .......-.....+++++.+. .+.++-...+.|...|+...
T Consensus       163 ~~l~~~~~~~P~Glald~~~~-~LY~aD~~~~~I~~~~~dG~  203 (619)
T 3s94_A          163 FIIINSEIYWPNGLTLDYEEQ-KLYWADAKLNFIHKSNLDGT  203 (619)
T ss_dssp             EEEECSSCSSEEEEEEETTTT-EEEEEETTTCCEEEESSSCC
T ss_pred             EEEEeCCCCCCcEEEEEccCC-EEEEEeCCCCeEEEecCCCC
Confidence            111112234567788887652 44455455667888887543

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=98.25  E-value=0.00072  Score=62.06  Aligned_cols=253  Identities=9%  Similarity=0.021  Sum_probs=144.7

Q ss_pred             CeeEEEECC-CCCEEEEe-cCCCcEEEEEccCcceeeeecc---ccCCeEEEEE-------ccCCcEEEEeeCCC-----
Q 014475           82 PIKPIAANS-HGTYIAGG-GQSGDIYMWEVASGRLLKKWHA---HYRAVTCLVF-------SEDGSFLISGSEDG-----  144 (424)
Q Consensus        82 ~v~~~~~s~-~~~~l~~~-~~dg~v~iwd~~~~~~~~~~~~---~~~~i~~~~~-------~~~~~~l~s~~~dg-----  144 (424)
                      ....|+|+| ++..|.++ ...+.|++.|++++........   .......++|       ++++++|+++...+     
T Consensus       140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~  219 (496)
T 3kya_A          140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDE  219 (496)
T ss_dssp             SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGG
T ss_pred             CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCccc
Confidence            467899998 34444444 3346789999887765544432   2235899999       99998666665543     


Q ss_pred             --cEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecC-------CCce----
Q 014475          145 --CVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLL-------KGRL----  211 (424)
Q Consensus       145 --~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~-------~~~~----  211 (424)
                        .|.+++...... ... ......+..+    .....++++|++. .++++-..++.|..+|+.       ++..    
T Consensus       220 ~~~V~~i~r~~~G~-~~~-~~~~~~v~~~----~~p~giavdp~~g-~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~  292 (496)
T 3kya_A          220 SPSVYIIKRNADGT-FDD-RSDIQLIAAY----KQCNGATIHPING-ELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPI  292 (496)
T ss_dssp             EEEEEEEECCTTSC-CST-TSCEEEEEEE----SCCCCEEECTTTC-CEEEEETTTTEEEEECHHHHHHHHHTTCCCCCB
T ss_pred             CceEEEEecCCCCc-eee-cccceeeccC----CCceEEEEcCCCC-eEEEEECCCCEEEEEecccccccccCceeeccc
Confidence              256665322000 000 0000112222    1334677887542 566666678889999997       4543    


Q ss_pred             -------eee-ee--cCcceeEEEECCCCCEEEEE-eCCCcEEEEEcCCCCCCCCCcCceeeeee---cc---------c
Q 014475          212 -------LRN-IV--FPSVIDAIALDPAEHVFYAG-SRDGSIYIAALNAESPSTSSYGMHIIGSL---SD---------H  268 (424)
Q Consensus       212 -------~~~-~~--~~~~i~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~---~~---------~  268 (424)
                             ... +.  .......++++|+++.|+++ +....|+.++.+........  ...+.-.   .+         .
T Consensus       293 ~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~--~~~~aG~~g~~G~~DG~~~~a~  370 (496)
T 3kya_A          293 VKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFIT--PYNFVGGYKQSGYRDDVGTEAR  370 (496)
T ss_dssp             GGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECC--CEEEEEBTTBCCCBCCBGGGCB
T ss_pred             ccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecc--cEEecCCCCCCcccCCcccccc
Confidence                   112 22  23446799999999965555 45678888776543210000  0000000   00         1


Q ss_pred             CcCeE-EEEec-------C-CCEEEEeCCCCcEEEEeCCCCcEEEEEeccC------------------------CCeeE
Q 014475          269 SKAVT-CLAYS-------T-GDLLISGSEDGMVRVWDPITHNIVRMFRLAK------------------------GPVNN  315 (424)
Q Consensus       269 ~~~i~-~~~~~-------~-~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~------------------------~~v~~  315 (424)
                      -.... .++..       + +.++++-..+..|+.++ .+|. +.++.+..                        ..-..
T Consensus       371 f~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~-~~G~-v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~g  448 (496)
T 3kya_A          371 MNNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVT-PEGI-VSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSG  448 (496)
T ss_dssp             CSSEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEEC-TTCB-EEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEE
T ss_pred             cCCCeEEEEEccccccccCCCeEEEEECCCCEEEEEe-CCCC-EEEEecccccccccCccccccCCCCchhhhhcCCCcE
Confidence            12234 45554       4 56777767788999998 4563 45554320                        12467


Q ss_pred             EEEEec-CceeeeccCCCceeeccCCCCCCC
Q 014475          316 ILVVRR-PLYLNLGSFSNPHTSSRRHGSQLP  345 (424)
Q Consensus       316 l~~s~~-~~~l~~~~~d~~i~iw~~~~~~~~  345 (424)
                      |+++++ +.+.++=+....|+.+++.+....
T Consensus       449 Iavd~~~g~lyVaD~~N~rIrki~~~~~~~~  479 (496)
T 3kya_A          449 LVYDDVKEMFYVHDQVGHTIRTISMEQEENV  479 (496)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEEECCCC--
T ss_pred             EEEECCCCEEEEEeCCCCEEEEEECCCCccc
Confidence            899986 777777777788888888766543

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=98.21  E-value=0.0024  Score=55.90  Aligned_cols=229  Identities=12%  Similarity=0.070  Sum_probs=123.0

Q ss_pred             CceEEecceeecCCCccccCCCCceeEEEEECCCCceeeee-----cCCCCeeEEEECCCCCEEEEecCCCcEEEEEccC
Q 014475           37 HGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKS-----LPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVAS  111 (424)
Q Consensus        37 ~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~~-----~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~  111 (424)
                      ..+..+.  +.+ +..++ ++.. |.|.. ..+.++ ....     .....+..+.+.+++..++++. +|.|..- .+.
T Consensus        80 ~~~~~i~--~~~-~~~~~-~g~~-g~i~~-S~DgG~-tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~g~v~~S-~Dg  150 (327)
T 2xbg_A           80 YRFNSVS--FQG-NEGWI-VGEP-PIMLH-TTDGGQ-SWSQIPLDPKLPGSPRLIKALGNGSAEMITN-VGAIYRT-KDS  150 (327)
T ss_dssp             CEEEEEE--EET-TEEEE-EEET-TEEEE-ESSTTS-SCEECCCCTTCSSCEEEEEEEETTEEEEEET-TCCEEEE-SST
T ss_pred             ccEEEEE--ecC-CeEEE-EECC-CeEEE-ECCCCC-CceECccccCCCCCeEEEEEECCCCEEEEeC-CccEEEE-cCC
Confidence            3566776  765 44443 4444 64444 223222 2211     1234578888877777776654 5544321 122


Q ss_pred             cceeee-eccccCCeEEEEEccCCcEEEEeeCCCcEEE-EeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCce
Q 014475          112 GRLLKK-WHAHYRAVTCLVFSEDGSFLISGSEDGCVRI-WSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVS  189 (424)
Q Consensus       112 ~~~~~~-~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~i-wd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  189 (424)
                      |+.-.. .......+..+.+.+++.+++.+. +|.+.. .|-..         .....+  -......+..+.+.+++  
T Consensus       151 G~tW~~~~~~~~~~~~~~~~~~~~~~~~~g~-~G~~~~S~d~gG---------~tW~~~--~~~~~~~~~~~~~~~~g--  216 (327)
T 2xbg_A          151 GKNWQALVQEAIGVMRNLNRSPSGEYVAVSS-RGSFYSTWEPGQ---------TAWEPH--NRTTSRRLHNMGFTPDG--  216 (327)
T ss_dssp             TSSEEEEECSCCCCEEEEEECTTSCEEEEET-TSSEEEEECTTC---------SSCEEE--ECCSSSCEEEEEECTTS--
T ss_pred             CCCCEEeecCCCcceEEEEEcCCCcEEEEEC-CCcEEEEeCCCC---------CceeEC--CCCCCCccceeEECCCC--
Confidence            332222 234456789999999888776664 444433 33200         111111  12344567778877665  


Q ss_pred             eEEEEEeCCCcEEEEecCCCceeeeeec-----CcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeee
Q 014475          190 ATIVSASEDRTCKVWSLLKGRLLRNIVF-----PSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGS  264 (424)
Q Consensus       190 ~~l~~~~~d~~v~iwd~~~~~~~~~~~~-----~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~  264 (424)
                      . ++.++.+|.+.+.+...++.-..+..     ...+..+.+.+++..++++. +|.+ .+..+.+..      +..+..
T Consensus       217 ~-~~~~~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~-~g~i-~~S~DgG~t------W~~~~~  287 (327)
T 2xbg_A          217 R-LWMIVNGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAGG-AGAL-LCSQDGGQT------WQQDVD  287 (327)
T ss_dssp             C-EEEEETTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEES-TTCE-EEESSTTSS------CEECGG
T ss_pred             C-EEEEeCCceEEEecCCCCCeeEeccCCcccCCcceEEEEecCCCEEEEEeC-CCeE-EEeCCCCcc------cEEcCc
Confidence            4 44556678877764333443333321     23578889998777666654 6666 344444321      222221


Q ss_pred             ecccCcCeEEEEecCCCEEEEeCCCCcEEEEeC
Q 014475          265 LSDHSKAVTCLAYSTGDLLISGSEDGMVRVWDP  297 (424)
Q Consensus       265 ~~~~~~~i~~~~~~~~~~l~t~~~dg~i~iwd~  297 (424)
                      .......+.++.|.++..+++++.+|.|.-++-
T Consensus       288 ~~~~~~~~~~v~~~~~~~~~~~G~~G~i~~~~~  320 (327)
T 2xbg_A          288 VKKVPSNFYKILFFSPDQGFILGQKGILLRYVT  320 (327)
T ss_dssp             GTTSSSCCCEEEEEETTEEEEECSTTEEEEECC
T ss_pred             cCCCCCCeEEEEEECCCceEEEcCCceEEEEcC
Confidence            112345677888866555667777898777663

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=98.20  E-value=0.00078  Score=61.85  Aligned_cols=239  Identities=8%  Similarity=0.059  Sum_probs=132.1

Q ss_pred             EeecCCCCCceEEEeCCCCceEEEeeCCCCCCCceEEeccee-------ecCCCccccCCCCc------eeEEEEECCC-
Q 014475            5 IASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRF-------LASSQLREQPSASS------GSILYWSWSK-   70 (424)
Q Consensus         5 lat~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~-------~~~~~~l~~~~~~~------g~i~vwd~~~-   70 (424)
                      +++.. ..+.|++.|.+++.....+............++  |       .++++.|.++...+      ..|.+.+... 
T Consensus       155 yv~~~-~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia--~~~~~~~~d~~G~~lyvad~~~~~~~~~~~V~~i~r~~~  231 (496)
T 3kya_A          155 YICYD-GHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIA--FNKKIEGYADEAEYMIVAIDYDGKGDESPSVYIIKRNAD  231 (496)
T ss_dssp             EEEEE-TEEEEEEEETTTTEEEEEECCTTSSCSBEEEEE--ECCCBTTTBCTTCEEEEEECCCTTGGGEEEEEEEECCTT
T ss_pred             EEEEC-CCCeEEEEECCCCEEEEEEccCccccCCCcEEE--EeecccccCCCCCEEEEEeCCCCCcccCceEEEEecCCC
Confidence            33434 456799999887666554433222344567777  8       99999666665442      2366665433 


Q ss_pred             Ccee-----eeecCCCCeeEEEECC-CCCEEEEecCCCcEEEEEcc-------Ccce-----------eee-ec-cccCC
Q 014475           71 PQVE-----VKSLPAEPIKPIAANS-HGTYIAGGGQSGDIYMWEVA-------SGRL-----------LKK-WH-AHYRA  124 (424)
Q Consensus        71 ~~~~-----~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~v~iwd~~-------~~~~-----------~~~-~~-~~~~~  124 (424)
                      +...     ...........++++| ++.++++-..++.|..+|+.       ++..           ... +. +....
T Consensus       232 G~~~~~~~~~~v~~~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~  311 (496)
T 3kya_A          232 GTFDDRSDIQLIAAYKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSW  311 (496)
T ss_dssp             SCCSTTSCEEEEEEESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSC
T ss_pred             CceeecccceeeccCCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccccccceeEecCCCCC
Confidence            1221     0111123456888999 55656666677889999997       4543           111 11 12345


Q ss_pred             eEEEEEccCCcE-EEEeeCCCcEEEEeCCcccchhcccccccceEEe--ecC---------CcCcee-EEEEEEc-----
Q 014475          125 VTCLVFSEDGSF-LISGSEDGCVRIWSLLTVFEECESQRASHLYLHS--FTG---------HTLRIT-DIVIGYG-----  186 (424)
Q Consensus       125 i~~~~~~~~~~~-l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~--~~~---------~~~~i~-~~~~~~~-----  186 (424)
                      ...++|+|+++. +++-+..+.|+.++.........   ......-.  ..+         .-.... .++....     
T Consensus       312 p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~---~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~  388 (496)
T 3kya_A          312 EFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFI---TPYNFVGGYKQSGYRDDVGTEARMNNPCQGVFVKNPDYTGE  388 (496)
T ss_dssp             CEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEC---CCEEEEEBTTBCCCBCCBGGGCBCSSEEEEEEEECTTCCSS
T ss_pred             ceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceec---ccEEecCCCCCCcccCCcccccccCCCeEEEEEcccccccc
Confidence            689999999995 44445567888866532110000   00000000  000         001223 3333310     


Q ss_pred             CceeEEEEEeCCCcEEEEecCCCceeeeee-c------------------------CcceeEEEECCC-CCEEEEEeCCC
Q 014475          187 GVSATIVSASEDRTCKVWSLLKGRLLRNIV-F------------------------PSVIDAIALDPA-EHVFYAGSRDG  240 (424)
Q Consensus       187 ~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~-~------------------------~~~i~~~~~~~~-~~~l~~~~~dg  240 (424)
                      ..+.++++=...+.|+.++. ++. +..+. .                        -.....++++++ +.++++=..+.
T Consensus       389 ~~g~lyVaD~~N~rIr~i~~-~G~-v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~~g~lyVaD~~N~  466 (496)
T 3kya_A          389 EEYDFYFVDRLNFCVRKVTP-EGI-VSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDVKEMFYVHDQVGH  466 (496)
T ss_dssp             CCEEEEEEEGGGTEEEEECT-TCB-EEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEETTTTEEEEEETTTT
T ss_pred             CCCeEEEEECCCCEEEEEeC-CCC-EEEEecccccccccCccccccCCCCchhhhhcCCCcEEEEECCCCEEEEEeCCCC
Confidence            22266666667788999984 453 33332 1                        013567888886 66555556677


Q ss_pred             cEEEEEcCCCC
Q 014475          241 SIYIAALNAES  251 (424)
Q Consensus       241 ~i~i~d~~~~~  251 (424)
                      +|+.+++....
T Consensus       467 rIrki~~~~~~  477 (496)
T 3kya_A          467 TIRTISMEQEE  477 (496)
T ss_dssp             EEEEEEECCCC
T ss_pred             EEEEEECCCCc
Confidence            88888887753

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=98.19  E-value=0.00081  Score=58.13  Aligned_cols=231  Identities=9%  Similarity=0.038  Sum_probs=116.6

Q ss_pred             CCCEEEEec-CC-----CcEEEEEccCcceee--eeccccCCeEEEEEccCCcEEEEeeCC-----CcEEEEeCCcccch
Q 014475           91 HGTYIAGGG-QS-----GDIYMWEVASGRLLK--KWHAHYRAVTCLVFSEDGSFLISGSED-----GCVRIWSLLTVFEE  157 (424)
Q Consensus        91 ~~~~l~~~~-~d-----g~v~iwd~~~~~~~~--~~~~~~~~i~~~~~~~~~~~l~s~~~d-----g~i~iwd~~~~~~~  157 (424)
                      ++.+++.|+ .+     ..+.+||+.+.+-..  .+.........+.  .+++.++.|+.+     ..+.+||+.+... 
T Consensus        14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~-   90 (301)
T 2vpj_A           14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYVASVS--LHDRIYVIGGYDGRSRLSSVECLDYTADED-   90 (301)
T ss_dssp             CEEEEEECCEETTTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEE--ETTEEEEECCBCSSCBCCCEEEEETTCCTT-
T ss_pred             CCEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCChhhccccEEE--ECCEEEEEcCCCCCccCceEEEEECCCCCC-
Confidence            456677776 33     368899987764322  2222112222222  357777887765     3588899866320 


Q ss_pred             hcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCC-----CcEEEEecCCCceeeeeec--CcceeEEEECCCC
Q 014475          158 CESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASED-----RTCKVWSLLKGRLLRNIVF--PSVIDAIALDPAE  230 (424)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d-----~~v~iwd~~~~~~~~~~~~--~~~i~~~~~~~~~  230 (424)
                           .....+..+......- ++ ...++  ..++.|+.+     ..+.+||+.+.+-...-..  +..-.+++. .++
T Consensus        91 -----~~W~~~~~~p~~r~~~-~~-~~~~~--~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~  160 (301)
T 2vpj_A           91 -----GVWYSVAPMNVRRGLA-GA-TTLGD--MIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVV-ASG  160 (301)
T ss_dssp             -----CCCEEECCCSSCCBSC-EE-EEETT--EEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEE-ETT
T ss_pred             -----CeeEECCCCCCCccce-eE-EEECC--EEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEE-ECC
Confidence                 0022222221111111 11 22244  677777654     3588899877654332221  111122222 266


Q ss_pred             CEEEEEeCC-----CcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecCCCEEEEeCCC-----CcEEEEeCCCC
Q 014475          231 HVFYAGSRD-----GSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTGDLLISGSED-----GMVRVWDPITH  300 (424)
Q Consensus       231 ~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~t~~~d-----g~i~iwd~~~~  300 (424)
                      ++++.|+.+     ..+.+||+.+..       +..+..+.........+. ..+.+++.|+.+     ..+.+||+.+.
T Consensus       161 ~iyv~GG~~~~~~~~~~~~~d~~~~~-------W~~~~~~p~~r~~~~~~~-~~~~i~v~GG~~~~~~~~~v~~yd~~~~  232 (301)
T 2vpj_A          161 VIYCLGGYDGLNILNSVEKYDPHTGH-------WTNVTPMATKRSGAGVAL-LNDHIYVVGGFDGTAHLSSVEAYNIRTD  232 (301)
T ss_dssp             EEEEECCBCSSCBCCCEEEEETTTTE-------EEEECCCSSCCBSCEEEE-ETTEEEEECCBCSSSBCCCEEEEETTTT
T ss_pred             EEEEECCCCCCcccceEEEEeCCCCc-------EEeCCCCCcccccceEEE-ECCEEEEEeCCCCCcccceEEEEeCCCC
Confidence            777777654     468899987754       333332222222222222 236777777754     46899999876


Q ss_pred             cEEEEEeccCCCeeEEEEEecCceeeeccCCC-----ceeeccCCCC
Q 014475          301 NIVRMFRLAKGPVNNILVVRRPLYLNLGSFSN-----PHTSSRRHGS  342 (424)
Q Consensus       301 ~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~d~-----~i~iw~~~~~  342 (424)
                      +-...-..........+..-+++.++.|+.++     .+.++|..+.
T Consensus       233 ~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~  279 (301)
T 2vpj_A          233 SWTTVTSMTTPRCYVGATVLRGRLYAIAGYDGNSLLSSIECYDPIID  279 (301)
T ss_dssp             EEEEECCCSSCCBSCEEEEETTEEEEECCBCSSSBEEEEEEEETTTT
T ss_pred             cEEECCCCCCcccceeEEEECCEEEEEcCcCCCcccccEEEEcCCCC
Confidence            53332111112222223334777778887664     3455565543

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=98.17  E-value=0.0046  Score=60.70  Aligned_cols=219  Identities=10%  Similarity=-0.029  Sum_probs=126.8

Q ss_pred             CceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCc----ee-eeecCCCCeeEEE
Q 014475           13 TGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQ----VE-VKSLPAEPIKPIA   87 (424)
Q Consensus        13 g~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~----~~-~~~~~~~~v~~~~   87 (424)
                      ..|+..++........+..    ...+..++  |.+....|..+....+.|+.++++...    .. ...........|+
T Consensus       404 ~~Ir~i~l~~~~~~~l~~~----~~~~~gl~--~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLA  477 (791)
T 3m0c_C          404 HEVRKMTLDRSEYTSLIPN----LRNVVALD--TEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLA  477 (791)
T ss_dssp             SSEEEECTTSCCCEEEECS----CSSEEEEE--EETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEE
T ss_pred             cceeEeeccCCcceeeecC----CCceEEEe--ecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceee
Confidence            5678888776554443332    24456677  888665555554444889999987531    12 2222345677899


Q ss_pred             ECCCC-CEEEEecCCCcEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEee-CC-CcEEEEeCCcccchhcccccc
Q 014475           88 ANSHG-TYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGS-ED-GCVRIWSLLTVFEECESQRAS  164 (424)
Q Consensus        88 ~s~~~-~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~-~d-g~i~iwd~~~~~~~~~~~~~~  164 (424)
                      +.+.+ ++.++-...+.|.+.++........+.........|++.|....|+.+. .. +.|...++...          
T Consensus       478 vD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~----------  547 (791)
T 3m0c_C          478 VDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV----------  547 (791)
T ss_dssp             EETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC----------
T ss_pred             eeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCC----------
Confidence            98866 4455556678899999875543333334455689999999755555443 22 67888887431          


Q ss_pred             cceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeeec---CcceeEEEECCCCCEEEEEeCCCc
Q 014475          165 HLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVF---PSVIDAIALDPAEHVFYAGSRDGS  241 (424)
Q Consensus       165 ~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~---~~~i~~~~~~~~~~~l~~~~~dg~  241 (424)
                       .........-.....|++.+... .++++=...+.|...++........+..   -.....|++. .+.++++-...+.
T Consensus       548 -~~~~lv~~~l~~P~GLavD~~~~-~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~-~~~lYwtD~~~~~  624 (791)
T 3m0c_C          548 -DIYSLVTENIQWPNGITLDLLSG-RLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEA  624 (791)
T ss_dssp             -CEEEEECSSCSCEEEEEEETTTT-EEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTE
T ss_pred             -ceEEEEeCCCCCceEEEEecCCC-eEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEe-CCEEEEEECCCCE
Confidence             11112222335677899987652 4444445567899999865443333322   1233455553 2334444445567


Q ss_pred             EEEEEcCCC
Q 014475          242 IYIAALNAE  250 (424)
Q Consensus       242 i~i~d~~~~  250 (424)
                      |...+..++
T Consensus       625 I~~~dk~tG  633 (791)
T 3m0c_C          625 IFSANRLTG  633 (791)
T ss_dssp             EEEEETTTC
T ss_pred             EEEEeCCCC
Confidence            777776555

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=98.10  E-value=0.013  Score=60.21  Aligned_cols=307  Identities=12%  Similarity=0.076  Sum_probs=160.1

Q ss_pred             EEeecCCC-CCceEEEeCCCCceEEEeeCC-CCCCCceEEecceeecCCCccccCCCCceeEEEEECC--CCceee---e
Q 014475            4 LIASSSVA-DTGIGCWDLESGAEQLRYKSC-ASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWS--KPQVEV---K   76 (424)
Q Consensus         4 ~lat~~~~-dg~i~vwd~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~--~~~~~~---~   76 (424)
                      ++|.|. . |++|+|+++.+.+.+...... ...+..+..+.  + ....+|.++-.+ |.+.-+.++  +++..-   .
T Consensus       573 ~~aVg~-~~d~tv~I~sL~~l~~~~~~~L~~~~~p~si~l~~--~-~~~~~L~igl~d-G~l~~~~~d~~tg~l~d~r~~  647 (1158)
T 3ei3_A          573 LCAIGL-WTDISARILKLPSFELLHKEMLGGEIIPRSILMTT--F-ESSHYLLCALGD-GALFYFGLNIETGLLSDRKKV  647 (1158)
T ss_dssp             EEEEEE-TTTTEEEEEETTTCCEEEEEECCSSCCEEEEEEEE--E-TTEEEEEEEETT-SEEEEEEECTTTCCEEEEEEE
T ss_pred             EEEEEE-CCCCEEEEEECCCCCeEEEEECCCCCCCcEEEEEE--e-CCCcEEEEEeCC-CeEEEEEEcCCCCccccceeE
Confidence            567777 5 999999999987766543321 12333444333  3 334566666665 887766654  333321   1


Q ss_pred             ecCCCCeeEEEECCCCCEEEEecCCCcEEEEEccCcceeeeeccccCCe-EEEEEccC--CcEEEEeeCCCcEEEEeCCc
Q 014475           77 SLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAV-TCLVFSED--GSFLISGSEDGCVRIWSLLT  153 (424)
Q Consensus        77 ~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i-~~~~~~~~--~~~l~s~~~dg~i~iwd~~~  153 (424)
                      .....++.-..+...+..-+.+..+....+|.-+ ++.... .-....+ ....|+..  .+-++..+ ++.++|..+.+
T Consensus       648 ~LG~~pv~L~~~~~~~~~~V~a~s~rp~liy~~~-~~l~~s-~l~~~~v~~~~~F~se~~~~g~v~~~-~~~LrI~~i~~  724 (1158)
T 3ei3_A          648 TLGTQPTVLRTFRSLSTTNVFACSDRPTVIYSSN-HKLVFS-NVNLKEVNYMCPLNSDGYPDSLALAN-NSTLTIGTIDE  724 (1158)
T ss_dssp             ECCSSCCEEEEEESSSCEEEEEESSSCEEEEESS-SSEEEE-EBSSSCCCEEEEECCSSSTTEEEEEC-SSCEEEEEECC
T ss_pred             EcCCCceEEEEEeeCCceeEEEECCCCEEEEEcC-CceEEe-ccChHHhceEeccCcccCCCcEEEEc-CCceEEEEecc
Confidence            2234455544454443332222334455555433 332211 1122233 33445431  23344433 45688888754


Q ss_pred             ccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEe-------------------------------------
Q 014475          154 VFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSAS-------------------------------------  196 (424)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~-------------------------------------  196 (424)
                      ..         ....+.+.- ...+..++++|..  +.++.+.                                     
T Consensus       725 ~~---------~~~~~~ipL-~~Tprri~y~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  792 (1158)
T 3ei3_A          725 IQ---------KLHIRTVPL-YESPRKICYQEVS--QCFGVLSSRIEVQDTSGGTTALRPSASTQALSSSVSSSKLFSSS  792 (1158)
T ss_dssp             SS---------SEEEEEEEC-SSEEEEEEEEGGG--TEEEEEEEEEEEECSSSSEEESSCCHHHHCSEEEECCCCCC---
T ss_pred             cC---------CeeEEEEeC-CCCceEEEEcCCC--CEEEEEEEeccccccccccchhhhhhhhhhhhhccccccccccc
Confidence            21         111221111 1233444444433  1111111                                     


Q ss_pred             ------------CCCcEEEEecCCCceeeeee--cCcceeEEEE---CC-CCCEEEEEe----------CCCcEEEEEcC
Q 014475          197 ------------EDRTCKVWSLLKGRLLRNIV--FPSVIDAIAL---DP-AEHVFYAGS----------RDGSIYIAALN  248 (424)
Q Consensus       197 ------------~d~~v~iwd~~~~~~~~~~~--~~~~i~~~~~---~~-~~~~l~~~~----------~dg~i~i~d~~  248 (424)
                                  .-+.+++.|..+.+.+..+.  ....+.+++.   .. ...++++|+          ..|.|++|++.
T Consensus       793 ~~~~~~~~g~~~~~s~i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~  872 (1158)
T 3ei3_A          793 TAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYS  872 (1158)
T ss_dssp             -------CCCEEEEEEEEEEETTTCCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEE
T ss_pred             ccCchhhcCCceeeEEEEEEeCCCCeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEE
Confidence                        11357888888888776666  3344555543   22 247888887          35789999997


Q ss_pred             CCCCCCCCcCceeeeeecccCcCeEEEEecCCCEEEEeCCCCcEEEEeCCCCcEEEEEeccCCCeeEEEEEecCceeeec
Q 014475          249 AESPSTSSYGMHIIGSLSDHSKAVTCLAYSTGDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLG  328 (424)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~  328 (424)
                      ..+       .+.+... ...++|++++--.| +|++|- ..+|++|++...+.++.-..+-..|..+.....+.+++.|
T Consensus       873 ~~k-------L~lv~~~-~v~g~v~al~~~~g-~Lla~i-g~~l~vy~l~~~~~L~~~~~~~~~i~~~~l~~~~~~I~vg  942 (1158)
T 3ei3_A          873 DGK-------LQTVAEK-EVKGAVYSMVEFNG-KLLASI-NSTVRLYEWTTEKELRTECNHYNNIMALYLKTKGDFILVG  942 (1158)
T ss_dssp             TTE-------EEEEEEE-EESSCEEEEEEETT-EEEEEE-TTEEEEEEECTTSCEEEEEEECCCSCEEEEEEETTEEEEE
T ss_pred             CCE-------EEEEEEE-EcCCcCEEEeeeCC-EEEEEc-CCEEEEEECCCCceEEEEeeccccEEEEEEeccCCEEEEE
Confidence            321       2333322 34678888875445 444443 4789999998765444111122224444555567889998


Q ss_pred             cCCCceeeccCC
Q 014475          329 SFSNPHTSSRRH  340 (424)
Q Consensus       329 ~~d~~i~iw~~~  340 (424)
                      ..-..+.+...+
T Consensus       943 D~~~Sv~~~~y~  954 (1158)
T 3ei3_A          943 DLMRSVLLLAYK  954 (1158)
T ss_dssp             ESSBCEEEEEEE
T ss_pred             EhhheEEEEEEE
Confidence            877777776544

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=98.09  E-value=0.0013  Score=57.12  Aligned_cols=200  Identities=13%  Similarity=0.198  Sum_probs=119.0

Q ss_pred             EeecCCCCCceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCc--c-ccCCCC--ceeEEEEECC--CCceeeee
Q 014475            5 IASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQL--R-EQPSAS--SGSILYWSWS--KPQVEVKS   77 (424)
Q Consensus         5 lat~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~--l-~~~~~~--~g~i~vwd~~--~~~~~~~~   77 (424)
                      ++... +.+.+.++|+ +|+.++.+..  +..+.|.... .|.-.|+.  + +++..+  +++|.+++++  +++.....
T Consensus        43 ii~t~-k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~-~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~i~  117 (355)
T 3amr_A           43 LITTN-KKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRY-DFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSMT  117 (355)
T ss_dssp             EEEEE-TTTEEEEEET-TSCEEEEECC--SCEEEEEEEE-EEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEECS
T ss_pred             EEEEc-CCCCEEEEcC-CCcEEEEccC--CCcccEEEec-ccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCceeecc
Confidence            44444 5688999999 7999988853  2233333211 13323332  3 333333  4899999774  33322221


Q ss_pred             c------CC-CCeeEEEE--CCC-CC-EEEEecCCCcEEEEEcc-------CcceeeeeccccCCeEEEEEccCCcEEEE
Q 014475           78 L------PA-EPIKPIAA--NSH-GT-YIAGGGQSGDIYMWEVA-------SGRLLKKWHAHYRAVTCLVFSEDGSFLIS  139 (424)
Q Consensus        78 ~------~~-~~v~~~~~--s~~-~~-~l~~~~~dg~v~iwd~~-------~~~~~~~~~~~~~~i~~~~~~~~~~~l~s  139 (424)
                      .      .. ..+..+++  +|. +. ++++...+|.+..|++.       +.+.++++.. .+.+..+...+....|+.
T Consensus       118 ~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l-gsq~EgcvvDd~~g~Lyv  196 (355)
T 3amr_A          118 DPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM-NSQTEGMAADDEYGRLYI  196 (355)
T ss_dssp             CTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC-SSCEEEEEEETTTTEEEE
T ss_pred             ccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecC-CCCcceEEEcCCCCeEEE
Confidence            1      11 56677777  774 44 67778888999999983       3355666654 356888999988888999


Q ss_pred             eeCCCcEEEEeCCcccchhcccccccceEEeec-C-CcCceeEEEEEEcCcee-EEEEEe-CCCcEEEEecC-CCceeee
Q 014475          140 GSEDGCVRIWSLLTVFEECESQRASHLYLHSFT-G-HTLRITDIVIGYGGVSA-TIVSAS-EDRTCKVWSLL-KGRLLRN  214 (424)
Q Consensus       140 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~-~-~~~~i~~~~~~~~~~~~-~l~~~~-~d~~v~iwd~~-~~~~~~~  214 (424)
                      +-++.-|..++.+...      ......+.... + -...+..|++-+..++. +|++++ .++++.+||.. +.+.+..
T Consensus       197 ~eEd~GIw~~da~p~~------~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~~vg~  270 (355)
T 3amr_A          197 AEEDEAIWKFSAEPDG------GSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNKYVAD  270 (355)
T ss_dssp             EETTTEEEEEECSTTS------CSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEE
T ss_pred             ecccceEEEEeCCcCC------CCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCcEEEE
Confidence            9988666555543210      01122233321 2 23467888885443223 555555 67799999986 5555555


Q ss_pred             ee
Q 014475          215 IV  216 (424)
Q Consensus       215 ~~  216 (424)
                      +.
T Consensus       271 f~  272 (355)
T 3amr_A          271 FR  272 (355)
T ss_dssp             EE
T ss_pred             EE
Confidence            54

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=98.06  E-value=4.1e-05  Score=74.49  Aligned_cols=219  Identities=9%  Similarity=-0.036  Sum_probs=123.0

Q ss_pred             CceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCC----Cceeeee-cCCCCeeEEE
Q 014475           13 TGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSK----PQVEVKS-LPAEPIKPIA   87 (424)
Q Consensus        13 g~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~----~~~~~~~-~~~~~v~~~~   87 (424)
                      +.|+..++.+.+....+...    ..+..++  |.+.+..|..+....+.|+.+++.+    ....... ........|+
T Consensus       386 ~~I~~id~~~~~~~~~~~~~----~~p~gla--~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~gla  459 (699)
T 1n7d_A          386 HEVRKMTLDRSEYTSLIPNL----RNVVALD--TEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLA  459 (699)
T ss_dssp             TC-CEECTTSCCEECCSCCC----TTCCCCE--EETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEE
T ss_pred             cceEEEeCCCCcceeeeccC----cceEEEc--cccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEE
Confidence            57888888766554433322    2334455  8887766666654448999999875    2221111 1223456788


Q ss_pred             ECCC-CCEEEEecCCCcEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEeeC-C-CcEEEEeCCcccchhcccccc
Q 014475           88 ANSH-GTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSE-D-GCVRIWSLLTVFEECESQRAS  164 (424)
Q Consensus        88 ~s~~-~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~-d-g~i~iwd~~~~~~~~~~~~~~  164 (424)
                      +.+. ++++++-...+.|.++++........+.........+++.|.+.+|+.+.. . +.|..+++...         .
T Consensus       460 vD~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~---------~  530 (699)
T 1n7d_A          460 VDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV---------D  530 (699)
T ss_dssp             CCCSSSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSC---------C
T ss_pred             EEeeCCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCC---------C
Confidence            8864 454555456678999998655433333333345678899986555444432 2 67777776431         1


Q ss_pred             cceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeeec---CcceeEEEECCCCCEEEEEeCCCc
Q 014475          165 HLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVF---PSVIDAIALDPAEHVFYAGSRDGS  241 (424)
Q Consensus       165 ~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~---~~~i~~~~~~~~~~~l~~~~~dg~  241 (424)
                      ...+  ....-...+.|++++++. .++++-+..+.|..+|+........+..   ......+++..+ .++++....+.
T Consensus       531 ~~~l--~~~~l~~PnGlavd~~~~-~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~  606 (699)
T 1n7d_A          531 IYSL--VTENIQWPNGITLDLLSG-RLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEA  606 (699)
T ss_dssp             CCEE--SCSSCSSCCCEEECTTTC-CEEEEETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTC
T ss_pred             eeEE--EeCCCCCccEEEEeccCC-EEEEEecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCe
Confidence            1111  111223456789988752 4555555677899999864332222211   122334555433 44445556678


Q ss_pred             EEEEEcCCC
Q 014475          242 IYIAALNAE  250 (424)
Q Consensus       242 i~i~d~~~~  250 (424)
                      |..++..++
T Consensus       607 V~~~d~~~G  615 (699)
T 1n7d_A          607 IFSANRLTG  615 (699)
T ss_dssp             EEEEETTTE
T ss_pred             EEEEEccCC
Confidence            888887654

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=98.04  E-value=0.015  Score=59.72  Aligned_cols=300  Identities=11%  Similarity=0.070  Sum_probs=155.3

Q ss_pred             ceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCcee--eeecCCCCeeEEEECCC
Q 014475           14 GIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVE--VKSLPAEPIKPIAANSH   91 (424)
Q Consensus        14 ~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~--~~~~~~~~v~~~~~s~~   91 (424)
                      .|++.+...+..+..++...+  ..|...+    .++..++.+. . +.+.++.++.++..  ........|.|+++.|.
T Consensus       493 ~Irli~~~~~~~~~~w~~p~~--~~I~~As----~n~~~vvva~-g-~~l~~fel~~~~L~~~~~~~l~~evscl~i~~~  564 (1158)
T 3ei3_A          493 SVRLVSQEPKALVSEWKEPQA--KNISVAS----CNSSQVVVAV-G-RALYYLQIHPQELRQISHTEMEHEVACLDITPL  564 (1158)
T ss_dssp             CEEEEESSSCCEEEEECCTTC--CCCCEEE----ECSSEEEEEE-T-TEEEEEEEETTEEEEEEEEECSSCEEEEECCCC
T ss_pred             EEEEEECCCCeEEEEEECCCC--CEEEEEE----eCCCEEEEEE-C-CEEEEEEeeCCceeeecccCCCCceEEEEeecC
Confidence            467777665556666643321  2333322    2234455553 3 77888877654322  22334678999999863


Q ss_pred             ------CCEEEEecC-CCcEEEEEccCcceeeeecc-ccCCeEEEEEcc--CCcEEEEeeCCCcEEEEeCCcccchhccc
Q 014475           92 ------GTYIAGGGQ-SGDIYMWEVASGRLLKKWHA-HYRAVTCLVFSE--DGSFLISGSEDGCVRIWSLLTVFEECESQ  161 (424)
Q Consensus        92 ------~~~l~~~~~-dg~v~iwd~~~~~~~~~~~~-~~~~i~~~~~~~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~  161 (424)
                            +.++++|.. |++|+|+++.+.+.+....- ......++.+..  ...+|..|-.||.+.-+.+.......   
T Consensus       565 ~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~dG~l~~~~~d~~tg~l---  641 (1158)
T 3ei3_A          565 GDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYFGLNIETGLL---  641 (1158)
T ss_dssp             SSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCSSCCEEEEEEEEETTEEEEEEEETTSEEEEEEECTTTCCE---
T ss_pred             CCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCCCCCCcEEEEEEeCCCcEEEEEeCCCeEEEEEEcCCCCcc---
Confidence                  478999986 99999999987665543221 112445554432  34578899999998766654211000   


Q ss_pred             ccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeeecCcce-eEEEECCC--CCEEEEEeC
Q 014475          162 RASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVI-DAIALDPA--EHVFYAGSR  238 (424)
Q Consensus       162 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~i-~~~~~~~~--~~~l~~~~~  238 (424)
                        ... ...+-+ ..++.=..+...+. ..+++.+ +.-..++.-+ ++....-..-..+ ....|+..  ..-++..+ 
T Consensus       642 --~d~-r~~~LG-~~pv~L~~~~~~~~-~~V~a~s-~rp~liy~~~-~~l~~s~l~~~~v~~~~~F~se~~~~g~v~~~-  713 (1158)
T 3ei3_A          642 --SDR-KKVTLG-TQPTVLRTFRSLST-TNVFACS-DRPTVIYSSN-HKLVFSNVNLKEVNYMCPLNSDGYPDSLALAN-  713 (1158)
T ss_dssp             --EEE-EEEECC-SSCCEEEEEESSSC-EEEEEES-SSCEEEEESS-SSEEEEEBSSSCCCEEEEECCSSSTTEEEEEC-
T ss_pred             --ccc-eeEEcC-CCceEEEEEeeCCc-eeEEEEC-CCCEEEEEcC-CceEEeccChHHhceEeccCcccCCCcEEEEc-
Confidence              000 011122 23443333333332 2333333 3334444332 3322111111223 33345432  23344333 


Q ss_pred             CCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCC-----------------------------
Q 014475          239 DGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSE-----------------------------  288 (424)
Q Consensus       239 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~-----------------------------  288 (424)
                      ++.++|..++....       ..+..+. -...+..++++| .+.++.+..                             
T Consensus       714 ~~~LrI~~i~~~~~-------~~~~~ip-L~~Tprri~y~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  785 (1158)
T 3ei3_A          714 NSTLTIGTIDEIQK-------LHIRTVP-LYESPRKICYQEVSQCFGVLSSRIEVQDTSGGTTALRPSASTQALSSSVSS  785 (1158)
T ss_dssp             SSCEEEEEECCSSS-------EEEEEEE-CSSEEEEEEEEGGGTEEEEEEEEEEEECSSSSEEESSCCHHHHCSEEEECC
T ss_pred             CCceEEEEecccCC-------eeEEEEe-CCCCceEEEEcCCCCEEEEEEEeccccccccccchhhhhhhhhhhhhcccc
Confidence            45699988865421       1222222 234567777777 443332210                             


Q ss_pred             --------------------CCcEEEEeCCCCcEEEEEeccCC-CeeEEEEE---ec-Cceeeecc----------CCCc
Q 014475          289 --------------------DGMVRVWDPITHNIVRMFRLAKG-PVNNILVV---RR-PLYLNLGS----------FSNP  333 (424)
Q Consensus       289 --------------------dg~i~iwd~~~~~~~~~~~~~~~-~v~~l~~s---~~-~~~l~~~~----------~d~~  333 (424)
                                          -+.|++.|..+.+.+..+..... .+.+++.-   .+ ..+|++|+          ..|.
T Consensus       786 ~~~~~~~~~~~~~~~g~~~~~s~i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gr  865 (1158)
T 3ei3_A          786 SKLFSSSTAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGR  865 (1158)
T ss_dssp             CCCC----------CCCEEEEEEEEEEETTTCCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEE
T ss_pred             cccccccccCchhhcCCceeeEEEEEEeCCCCeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceE
Confidence                                13478888888888777664433 34444432   22 46787776          3467


Q ss_pred             eeeccCC
Q 014475          334 HTSSRRH  340 (424)
Q Consensus       334 i~iw~~~  340 (424)
                      |.++++.
T Consensus       866 i~vf~v~  872 (1158)
T 3ei3_A          866 IVVFQYS  872 (1158)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEE
Confidence            8888876

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=98.03  E-value=0.0023  Score=55.29  Aligned_cols=227  Identities=11%  Similarity=0.120  Sum_probs=112.9

Q ss_pred             CCEEEEecCC----CcEEEEEccCcceee--eeccccCCeEEEEEccCCcEEEEeeCCC-----cEEEEeCCcccchhcc
Q 014475           92 GTYIAGGGQS----GDIYMWEVASGRLLK--KWHAHYRAVTCLVFSEDGSFLISGSEDG-----CVRIWSLLTVFEECES  160 (424)
Q Consensus        92 ~~~l~~~~~d----g~v~iwd~~~~~~~~--~~~~~~~~i~~~~~~~~~~~l~s~~~dg-----~i~iwd~~~~~~~~~~  160 (424)
                      +.+++.|+.+    ..+.+||+.+.+-..  .+......-..+.+  ++..++.|+.++     .+.+||..+.      
T Consensus        16 ~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~------   87 (302)
T 2xn4_A           16 KLMVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRRCRAGMVYM--AGLVFAVGGFNGSLRVRTVDSYDPVKD------   87 (302)
T ss_dssp             EEEEEECCBSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEESCBCSSSBCCCEEEEETTTT------
T ss_pred             CEEEEECCCCCCCCCcEEEEcCcCCcEeEcccCCcccccceEEEE--CCEEEEEeCcCCCccccceEEECCCCC------
Confidence            4556666643    358889987764322  12211111122222  677788887553     4788888652      


Q ss_pred             cccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCC-----cEEEEecCCCceeeeee--cCcceeEEEECCCCCEE
Q 014475          161 QRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDR-----TCKVWSLLKGRLLRNIV--FPSVIDAIALDPAEHVF  233 (424)
Q Consensus       161 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~-----~v~iwd~~~~~~~~~~~--~~~~i~~~~~~~~~~~l  233 (424)
                         ....+..+...... .+++ ..++  ..++.|+.++     .+.+||+.+.+-...-.  .+..-.+++. -+++++
T Consensus        88 ---~W~~~~~~p~~r~~-~~~~-~~~~--~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iy  159 (302)
T 2xn4_A           88 ---QWTSVANMRDRRST-LGAA-VLNG--LLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGV-VGGLLY  159 (302)
T ss_dssp             ---EEEEECCCSSCCBS-CEEE-EETT--EEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEE
T ss_pred             ---ceeeCCCCCccccc-eEEE-EECC--EEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEE-ECCEEE
Confidence               11112111111111 1122 2244  6777777553     47788887765333222  1111122222 256666


Q ss_pred             EEEeCC-------CcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecCCCEEEEeCCC-----CcEEEEeCCCCc
Q 014475          234 YAGSRD-------GSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTGDLLISGSED-----GMVRVWDPITHN  301 (424)
Q Consensus       234 ~~~~~d-------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~t~~~d-----g~i~iwd~~~~~  301 (424)
                      +.|+.+       ..+.+||+.+..       +..+..+........ ++...+.+++.|+.+     ..+.+||+.+.+
T Consensus       160 v~GG~~~~~~~~~~~~~~yd~~~~~-------W~~~~~~p~~r~~~~-~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~  231 (302)
T 2xn4_A          160 AVGGYDVASRQCLSTVECYNATTNE-------WTYIAEMSTRRSGAG-VGVLNNLLYAVGGHDGPLVRKSVEVYDPTTNA  231 (302)
T ss_dssp             EECCEETTTTEECCCEEEEETTTTE-------EEEECCCSSCCBSCE-EEEETTEEEEECCBSSSSBCCCEEEEETTTTE
T ss_pred             EEeCCCCCCCccccEEEEEeCCCCc-------EEECCCCcccccccc-EEEECCEEEEECCCCCCcccceEEEEeCCCCC
Confidence            666542       358899987754       333332222222222 222347777887754     368999988764


Q ss_pred             EEEEEeccCCCeeEEEEEecCceeeeccCCCc-----eeeccCCCC
Q 014475          302 IVRMFRLAKGPVNNILVVRRPLYLNLGSFSNP-----HTSSRRHGS  342 (424)
Q Consensus       302 ~~~~~~~~~~~v~~l~~s~~~~~l~~~~~d~~-----i~iw~~~~~  342 (424)
                      -...-..........+...+++.++.|+.++.     +.++|..+.
T Consensus       232 W~~~~~~~~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~  277 (302)
T 2xn4_A          232 WRQVADMNMCRRNAGVCAVNGLLYVVGGDDGSCNLASVEYYNPTTD  277 (302)
T ss_dssp             EEEECCCSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTT
T ss_pred             EeeCCCCCCccccCeEEEECCEEEEECCcCCCcccccEEEEcCCCC
Confidence            33221111111122233347777788876643     556665543

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=98.02  E-value=0.0066  Score=53.97  Aligned_cols=215  Identities=10%  Similarity=0.106  Sum_probs=133.9

Q ss_pred             CceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCceeeeecCCCCeeEEEECCCC
Q 014475           13 TGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSLPAEPIKPIAANSHG   92 (424)
Q Consensus        13 g~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~~~~~~~v~~~~~s~~~   92 (424)
                      .+|.|-|+..+..+.+..-  .....|      .+|..+.+|.=..  .++.++|+++.+........++|.-=.|-.+.
T Consensus        48 ~~vvIiDl~~~~~~~rrpi--~AdsAI------MnP~~~iiALrag--~~lQiFnle~K~klks~~~~e~VvfWkWis~~  117 (494)
T 1bpo_A           48 AQVVIIDMNDPSNPIRRPI--SADSAI------MNPASKVIALKAG--KTLQIFNIEMKSKMKAHTMTDDVTFWKWISLN  117 (494)
T ss_dssp             CEEEEEETTSTTSCEEEEC--CCSEEE------ECSSSSCEEEEET--TEEEEEETTTTEEEEEEECSSCCCEEEEEETT
T ss_pred             CeEEEEECCCCCcceeccc--ccceee------eCCCCcEEEEecC--CeEEEEchHHhhhhcceecCCCceEEEecCCC
Confidence            3677777777655422211  111112      5677777776653  79999999998876666666777776775443


Q ss_pred             CEEEEecCCCcEEEEEccCc-ceeeeeccc----cCCeEEEEEccCCcEEEEeeC-------CCcEEEEeCCcccchhcc
Q 014475           93 TYIAGGGQSGDIYMWEVASG-RLLKKWHAH----YRAVTCLVFSEDGSFLISGSE-------DGCVRIWSLLTVFEECES  160 (424)
Q Consensus        93 ~~l~~~~~dg~v~iwd~~~~-~~~~~~~~~----~~~i~~~~~~~~~~~l~s~~~-------dg~i~iwd~~~~~~~~~~  160 (424)
                       .|+..+ +..|+-|++... .+.+.+..|    ...|..-..+++.++++..+-       .|.+.+|..+.       
T Consensus       118 -~l~lVT-~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er-------  188 (494)
T 1bpo_A          118 -TVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR-------  188 (494)
T ss_dssp             -EEEEEC-SSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTT-------
T ss_pred             -eEEEEc-CCeeEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccc-------
Confidence             455544 357999999643 445555443    245666677888888774432       46788998854       


Q ss_pred             cccccceEEeecCCcCceeEEEEEEcCc-eeEEEEEeC---CCcEEEEecCCC---ce-----eeeee-----cCcceeE
Q 014475          161 QRASHLYLHSFTGHTLRITDIVIGYGGV-SATIVSASE---DRTCKVWSLLKG---RL-----LRNIV-----FPSVIDA  223 (424)
Q Consensus       161 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~l~~~~~---d~~v~iwd~~~~---~~-----~~~~~-----~~~~i~~  223 (424)
                           ...+.+.+|...-..+.+..+.. ...++.+..   .+.+++-++...   .+     ...+.     ..+-.-+
T Consensus       189 -----~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPva  263 (494)
T 1bpo_A          189 -----KVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVA  263 (494)
T ss_dssp             -----CCEEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEE
T ss_pred             -----cccchheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeE
Confidence                 23455677766554443322111 134444443   278999998543   11     11111     1234567


Q ss_pred             EEECCCCCEEEEEeCCCcEEEEEcCCCC
Q 014475          224 IALDPAEHVFYAGSRDGSIYIAALNAES  251 (424)
Q Consensus       224 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~  251 (424)
                      +..++....++.-+.-|.+++||+.++.
T Consensus       264 mqvs~kygviyviTK~G~i~lyDleTgt  291 (494)
T 1bpo_A          264 MQISEKHDVVFLITKYGYIHLYDLETGT  291 (494)
T ss_dssp             EEEETTTTEEEEEETTSEEEEEETTTCC
T ss_pred             EEecccCCEEEEEecCceEEEEecccce
Confidence            8888888899999999999999999973

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=98.00  E-value=0.0072  Score=53.46  Aligned_cols=239  Identities=13%  Similarity=0.018  Sum_probs=126.0

Q ss_pred             CCCeeEEEECCCCCEEEEecCCCcEEEEEccCcce--eeeec---cccCCeEEEEEccC---CcEEEEe-eCC-----Cc
Q 014475           80 AEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRL--LKKWH---AHYRAVTCLVFSED---GSFLISG-SED-----GC  145 (424)
Q Consensus        80 ~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~--~~~~~---~~~~~i~~~~~~~~---~~~l~s~-~~d-----g~  145 (424)
                      -.....++|.|+|+++++ ..+|.|++++  +++.  +..+.   ........++|+|+   +..|.++ ...     +.
T Consensus        30 l~~P~~ia~~pdG~l~V~-e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~  106 (352)
T 2ism_A           30 LEVPWALAFLPDGGMLIA-ERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQ  106 (352)
T ss_dssp             CSCEEEEEECTTSCEEEE-ETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEE
T ss_pred             CCCceEEEEcCCCeEEEE-eCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccE
Confidence            345689999999996665 5568999998  3432  22111   12456889999997   4444443 332     56


Q ss_pred             EEEEeCCcccchhcccccccceEEeec---CCcCceeEEEEEEcCceeEEEEEeC-------------CCcEEEEecCCC
Q 014475          146 VRIWSLLTVFEECESQRASHLYLHSFT---GHTLRITDIVIGYGGVSATIVSASE-------------DRTCKVWSLLKG  209 (424)
Q Consensus       146 i~iwd~~~~~~~~~~~~~~~~~~~~~~---~~~~~i~~~~~~~~~~~~~l~~~~~-------------d~~v~iwd~~~~  209 (424)
                      |..++......    . .....+..+.   ........++|.+++  .+.++.+.             .|.|.-++....
T Consensus       107 v~r~~~~~~~~----~-~~~~l~~~~p~~~~~~h~~~~l~~~pdG--~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~  179 (352)
T 2ism_A          107 VVRLRHLGERG----V-LDRVVLDGIPARPHGLHSGGRIAFGPDG--MLYVTTGEVYERELAQDLASLGGKILRLTPEGE  179 (352)
T ss_dssp             EEEEEECSSCE----E-EEEEEEEEECCCTTCCCCCCCEEECTTS--CEEEECCCTTCGGGGGCTTCSSSEEEEECTTSS
T ss_pred             EEEEEeCCCCc----C-ceEEEEEeCCCCCCCCcCCceEEECCCC--CEEEEECCCCCCccccCCCCCceEEEEEcCCCC
Confidence            77777653210    0 0111122222   111233688999987  55555432             245666665431


Q ss_pred             ------------ceeeeee-cCcceeEEEECC-CCCEEEEEeCCCcE------EEEEcCCCCCCCCC--------c-Cce
Q 014475          210 ------------RLLRNIV-FPSVIDAIALDP-AEHVFYAGSRDGSI------YIAALNAESPSTSS--------Y-GMH  260 (424)
Q Consensus       210 ------------~~~~~~~-~~~~i~~~~~~~-~~~~l~~~~~dg~i------~i~d~~~~~~~~~~--------~-~~~  260 (424)
                                  .....+. .-.....++|+| ++.++++-.....+      .+.-+..+..-..+        . ...
T Consensus       180 ~p~~npf~~~~~~~~~i~a~G~rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~  259 (352)
T 2ism_A          180 PAPGNPFLGRRGARPEVYSLGHRNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRD  259 (352)
T ss_dssp             BCTTCTTTTCTTSCTTEEEECCSEECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCC
T ss_pred             CCCCCcccCCCCCCccEEEEcCCCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcC
Confidence                        0111111 123467889999 56655543333321      23333322210000        0 011


Q ss_pred             eeeeecccCcCeEEEEecCCCEEEEeCCCCcEEEEeCCCCcE------EEEEeccCCCeeEEEEEecCceeeecc
Q 014475          261 IIGSLSDHSKAVTCLAYSTGDLLISGSEDGMVRVWDPITHNI------VRMFRLAKGPVNNILVVRRPLYLNLGS  329 (424)
Q Consensus       261 ~~~~~~~~~~~i~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~------~~~~~~~~~~v~~l~~s~~~~~l~~~~  329 (424)
                      +...+ .+......++|..+.++++.-..+.|...++.....      ...+......+..+++.|||.+.++..
T Consensus       260 p~~~~-~~~~ap~G~~~~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~~~  333 (352)
T 2ism_A          260 PLYFW-PQGFPPGNLAFFRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALSGFGRLREVQVGPDGALYVTTS  333 (352)
T ss_dssp             CSEEC-TTCCCEEEEEEETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEESSCCEEEEEECTTSCEEEEEC
T ss_pred             CeEec-CCCCCCcceEEECCEEEEEECCCCEEEEEEECCCCcceeecchheecccCCCeeEEEECCCCcEEEEEe
Confidence            22233 223356677875577777777777888887764331      122222346789999999997666543

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=97.98  E-value=0.0017  Score=56.01  Aligned_cols=217  Identities=12%  Similarity=0.129  Sum_probs=111.7

Q ss_pred             eeEEEEECCCCceeeeec-CCCCeeEEEECCCCCEEEEecCC-----CcEEEEEccCcc---ee--eeeccccCCeEEEE
Q 014475           61 GSILYWSWSKPQVEVKSL-PAEPIKPIAANSHGTYIAGGGQS-----GDIYMWEVASGR---LL--KKWHAHYRAVTCLV  129 (424)
Q Consensus        61 g~i~vwd~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~d-----g~v~iwd~~~~~---~~--~~~~~~~~~i~~~~  129 (424)
                      ..+.++|..+.+...... +...........++.+++.|+.+     ..+.+||+.+.+   -.  ..+.........+.
T Consensus        31 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~  110 (301)
T 2vpj_A           31 DVVEKYDPKTQEWSFLPSITRKRRYVASVSLHDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATT  110 (301)
T ss_dssp             CCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEEE
T ss_pred             eEEEEEcCCCCeEEeCCCCChhhccccEEEECCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEEE
Confidence            478888887765432221 11111111222357777888765     359999988765   22  22222222222233


Q ss_pred             EccCCcEEEEeeCCC-----cEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCC-----C
Q 014475          130 FSEDGSFLISGSEDG-----CVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASED-----R  199 (424)
Q Consensus       130 ~~~~~~~l~s~~~dg-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d-----~  199 (424)
                      +  +++.++.|+.++     .+.+||+.+.         ....+......... .++ ...++  ..++.|+.+     .
T Consensus       111 ~--~~~lyv~GG~~~~~~~~~~~~~d~~~~---------~W~~~~~~p~~r~~-~~~-~~~~~--~iyv~GG~~~~~~~~  175 (301)
T 2vpj_A          111 L--GDMIYVSGGFDGSRRHTSMERYDPNID---------QWSMLGDMQTAREG-AGL-VVASG--VIYCLGGYDGLNILN  175 (301)
T ss_dssp             E--TTEEEEECCBCSSCBCCEEEEEETTTT---------EEEEEEECSSCCBS-CEE-EEETT--EEEEECCBCSSCBCC
T ss_pred             E--CCEEEEEcccCCCcccceEEEEcCCCC---------eEEECCCCCCCccc-ceE-EEECC--EEEEECCCCCCcccc
Confidence            3  577777777543     5788888652         22222222211111 112 22244  677777654     4


Q ss_pred             cEEEEecCCCceeeeee--cCcceeEEEECCCCCEEEEEeCC-----CcEEEEEcCCCCCCCCCcCceeeeeecccCcCe
Q 014475          200 TCKVWSLLKGRLLRNIV--FPSVIDAIALDPAEHVFYAGSRD-----GSIYIAALNAESPSTSSYGMHIIGSLSDHSKAV  272 (424)
Q Consensus       200 ~v~iwd~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i  272 (424)
                      .+..||+.+.+-...-.  .+..-.+++. -++.+++.|+.+     ..+.+||+.+..       +..+..+.......
T Consensus       176 ~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~i~v~GG~~~~~~~~~v~~yd~~~~~-------W~~~~~~p~~r~~~  247 (301)
T 2vpj_A          176 SVEKYDPHTGHWTNVTPMATKRSGAGVAL-LNDHIYVVGGFDGTAHLSSVEAYNIRTDS-------WTTVTSMTTPRCYV  247 (301)
T ss_dssp             CEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCBCSSSBCCCEEEEETTTTE-------EEEECCCSSCCBSC
T ss_pred             eEEEEeCCCCcEEeCCCCCcccccceEEE-ECCEEEEEeCCCCCcccceEEEEeCCCCc-------EEECCCCCCcccce
Confidence            58899988765433222  1111112222 256777777654     468999998764       33333222222222


Q ss_pred             EEEEecCCCEEEEeCCC-----CcEEEEeCCCCc
Q 014475          273 TCLAYSTGDLLISGSED-----GMVRVWDPITHN  301 (424)
Q Consensus       273 ~~~~~~~~~~l~t~~~d-----g~i~iwd~~~~~  301 (424)
                      .++. ..+.+++.|+.+     ..+.+||+.+.+
T Consensus       248 ~~~~-~~~~i~v~GG~~~~~~~~~v~~yd~~~~~  280 (301)
T 2vpj_A          248 GATV-LRGRLYAIAGYDGNSLLSSIECYDPIIDS  280 (301)
T ss_dssp             EEEE-ETTEEEEECCBCSSSBEEEEEEEETTTTE
T ss_pred             eEEE-ECCEEEEEcCcCCCcccccEEEEcCCCCe
Confidence            2222 246777777765     357888887653

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=97.96  E-value=0.0086  Score=53.23  Aligned_cols=265  Identities=11%  Similarity=0.091  Sum_probs=159.8

Q ss_pred             eeEEEEECCCCceeeeecCCCCeeEEEECCCCCEEEEecCCCcEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEe
Q 014475           61 GSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISG  140 (424)
Q Consensus        61 g~i~vwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~  140 (424)
                      ..|.+-|+..+....+..-.  --+.-.+|..+.+|.-. ..++.|+|+++.+.++.+.-. ..|.-=.|-.+. .|+..
T Consensus        48 ~~vvIiDl~~~~~~~rrpi~--AdsAIMnP~~~iiALra-g~~lQiFnle~K~klks~~~~-e~VvfWkWis~~-~l~lV  122 (494)
T 1bpo_A           48 AQVVIIDMNDPSNPIRRPIS--ADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMT-DDVTFWKWISLN-TVALV  122 (494)
T ss_dssp             CEEEEEETTSTTSCEEEECC--CSEEEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEECS-SCCCEEEEEETT-EEEEE
T ss_pred             CeEEEEECCCCCcceecccc--cceeeeCCCCcEEEEec-CCeEEEEchHHhhhhcceecC-CCceEEEecCCC-eEEEE
Confidence            58888898876654333221  12445678888777754 578999999999888877643 456666776444 34443


Q ss_pred             eCCCcEEEEeCCcccchhcccccccceEEeecCCc----CceeEEEEEEcCceeEEEEEe-------CCCcEEEEecCCC
Q 014475          141 SEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHT----LRITDIVIGYGGVSATIVSAS-------EDRTCKVWSLLKG  209 (424)
Q Consensus       141 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~----~~i~~~~~~~~~~~~~l~~~~-------~d~~v~iwd~~~~  209 (424)
                      + +..|+-|+++.          ...+.+.+..|.    ..|..-..+++.  ++++..+       -.|.+.+|..+.+
T Consensus       123 T-~taVyHWsi~~----------~s~P~kvFdR~~~L~~~QIInY~~d~~~--kW~~l~GI~~~~~~v~G~mQLYS~er~  189 (494)
T 1bpo_A          123 T-DNAVYHWSMEG----------ESQPVKMFDRHSSLAGCQIINYRTDAKQ--KWLLLTGISAQQNRVVGAMQLYSVDRK  189 (494)
T ss_dssp             C-SSEEEEEESSS----------SCCCEEEEECCGGGTTCEEEEEEECTTS--SEEEEEEEEEETTEEEEEEEEEESTTC
T ss_pred             c-CCeeEEecccC----------CCCchhheecchhcccceEEEEEECCCC--CeEEEEeecccCCcccceEEEeecccc
Confidence            3 44799999964          223344444432    344444444444  6665433       2467889988755


Q ss_pred             ceeeeeecCcceeEEEECCC--C-CEEEEEeC---CCcEEEEEcCCCCCCCCCcCceeeeeec---ccCcCeEEEEecC-
Q 014475          210 RLLRNIVFPSVIDAIALDPA--E-HVFYAGSR---DGSIYIAALNAESPSTSSYGMHIIGSLS---DHSKAVTCLAYST-  279 (424)
Q Consensus       210 ~~~~~~~~~~~i~~~~~~~~--~-~~l~~~~~---dg~i~i~d~~~~~~~~~~~~~~~~~~~~---~~~~~i~~~~~~~-  279 (424)
                      .....-.|-.....+.+.-+  . ..++.+..   .+++++.++.........+..+.+..+.   .-.+-..++..++ 
T Consensus       190 ~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~k  269 (494)
T 1bpo_A          190 VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEK  269 (494)
T ss_dssp             CEEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETT
T ss_pred             ccchheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEeccc
Confidence            43222223333323222211  1 23333333   3789999996642112222222222222   2245567888888 


Q ss_pred             CCEEEEeCCCCcEEEEeCCCCcEEEEEeccCCCeeEEEEEecCceeeeccCCCceeeccCCCCC
Q 014475          280 GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGSQ  343 (424)
Q Consensus       280 ~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~d~~i~iw~~~~~~  343 (424)
                      ...+..-..-|.|.+||+.++.++..-+-...+|...+-.....-++.....|.|.--.++...
T Consensus       270 ygviyviTK~G~i~lyDleTgt~i~~nrIs~~~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~e~~  333 (494)
T 1bpo_A          270 HDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEEN  333 (494)
T ss_dssp             TTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTTTEEEEEETTCEEEEEEECTTT
T ss_pred             CCEEEEEecCceEEEEecccceeeeeecccCCceEEecccCCCCcEEEEccCceEEEEEEcccc
Confidence            7888888899999999999999999887777777766666555555555567766655555443

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=97.96  E-value=0.015  Score=55.68  Aligned_cols=281  Identities=11%  Similarity=-0.030  Sum_probs=148.5

Q ss_pred             eEEecceeecCCCccccCCCCceeEEEEECCCCceeeeec-CCCCeeEEEECCCCCEEEEecCCCcEEEEEccCcceeee
Q 014475           39 LACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSL-PAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKK  117 (424)
Q Consensus        39 v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~  117 (424)
                      ...++  +.++++.|..+....+.|...+++......... .......+++..+ ..+++-...+.|...|..+++....
T Consensus       173 P~Gla--ld~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~gi~~~~~-~ly~td~~~~~V~~~d~~tg~~~~~  249 (619)
T 3s94_A          173 PNGLT--LDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFED-ILYWTDWSTHSILACNKYTGEGLRE  249 (619)
T ss_dssp             EEEEE--EETTTTEEEEEETTTCCEEEESSSCCEEC---------CCCEEESSS-EEEEECTTTCSEEEEESSSCCCCEE
T ss_pred             CcEEE--EEccCCEEEEEeCCCCeEEEecCCCCccEEEEeCCCCCceEEEEeCC-EEEEecCCCCEEEEEECCCCcccEE
Confidence            34455  888766666665444889999987654432211 2233457777655 4555555667899888877754433


Q ss_pred             eccccCCeEE-------------------------EEE-----------ccCC---------------cEEEEeeCCCcE
Q 014475          118 WHAHYRAVTC-------------------------LVF-----------SEDG---------------SFLISGSEDGCV  146 (424)
Q Consensus       118 ~~~~~~~i~~-------------------------~~~-----------~~~~---------------~~l~s~~~dg~i  146 (424)
                      +.........                         +++           +|.|               .+|+.+ ..+.|
T Consensus       250 i~~~~~~p~~i~v~~~~~qp~~~n~C~~~ng~Cs~lCl~~~~~~~~~C~C~~g~~l~~d~~~C~~~~~~~Ll~~-~~~~i  328 (619)
T 3s94_A          250 IHSDIFSPMDIHAFSQQRQPNATNPCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCKDGATELLLLA-RRTDL  328 (619)
T ss_dssp             CCSCCCCCSEEEECCGGGSCCCCCTTTTTGGGCSSEEEECSSTTSEEEECCTTCCBCTTSSCBCSSCSEEEEEE-ESSCE
T ss_pred             EecCCCCCcEEEEEccccCCCccccccCCCCcccceEECCCCCCCceEeCCchheecccCcccCCCCceEEEEE-cccce
Confidence            2211111111                         111           1110               112222 12334


Q ss_pred             EEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeee-cCcceeEEE
Q 014475          147 RIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIA  225 (424)
Q Consensus       147 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~-~~~~i~~~~  225 (424)
                      +..++....        ......... .-..+.++++.+.+. ..+++-...+.|..+++........+. .-.....++
T Consensus       329 ~~i~l~~~~--------~~~~~~~~~-~l~~~~~ld~d~~~~-~ly~sD~~~~~I~r~~~~g~~~~~v~~~~~~~p~GlA  398 (619)
T 3s94_A          329 RRISLDTPD--------FTDIVLQLE-DIRHAIAIDYDPVEG-YIYWTDDEVRAIRRSFIDGSGSQFVVTAQIAHPDGIA  398 (619)
T ss_dssp             EEEESSSTT--------CCCEECCCS-CCSSEEEEEEETTTT-EEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEE
T ss_pred             EEEecCCCc--------cceeEEecc-ccCccEEEEEEcCCC-eEEEEeCCCCeEEEEEcCCCccEEEEECCCCCcCceE
Confidence            444443210        000010111 123456777877442 455555567889999887544333332 224677899


Q ss_pred             ECCCCC-EEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeC--CCCcEEEEeCCCCc
Q 014475          226 LDPAEH-VFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGS--EDGMVRVWDPITHN  301 (424)
Q Consensus       226 ~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~--~dg~i~iwd~~~~~  301 (424)
                      +.+.+. ++++-+..+.|.+.+++....       ..  .....-.....+++.| ...|..+.  ..+.|...++. |.
T Consensus       399 vD~~~~~lY~tD~~~~~I~v~~~~G~~~-------~~--l~~~~l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~d-G~  468 (619)
T 3s94_A          399 VDWVARNLYWTDTGTDRIEVTRLNGTMR-------KI--LISEDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALD-GS  468 (619)
T ss_dssp             EETTTTEEEEEETTTTEEEEEETTSCSC-------EE--EECTTCCSEEEEEEETTTTEEEEEECSSSCEEEEEETT-SC
T ss_pred             EecccCcEEEEeCCCCcEEEEeCCCCeE-------EE--EEECCCCCeeeEEEEcCCCcEEEecCCCCCEEEEEccC-CC
Confidence            987544 555555678899999876421       11  1122345678999998 44444443  34667777765 33


Q ss_pred             EEEEE-eccCCCeeEEEEEecCceeeec-cCCCceeeccCCCCC
Q 014475          302 IVRMF-RLAKGPVNNILVVRRPLYLNLG-SFSNPHTSSRRHGSQ  343 (424)
Q Consensus       302 ~~~~~-~~~~~~v~~l~~s~~~~~l~~~-~~d~~i~iw~~~~~~  343 (424)
                      ....+ ...-..-+.|++++++..|..+ +..+.|...++.+..
T Consensus       469 ~~~~l~~~~l~~P~GlalD~~~~~LY~aD~~~~~I~~~~~dG~~  512 (619)
T 3s94_A          469 DRVVLVNTSLGWPNGLALDYDEGKIYWGDAKTDKIEVMNTDGTG  512 (619)
T ss_dssp             SCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEESSSCC
T ss_pred             ccEEEEeCCCCCCeeeEEcccCCEEEEEECCCCEEEEEecCCCc
Confidence            23333 2233467889999876666444 445667777776543

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=97.95  E-value=0.00056  Score=58.81  Aligned_cols=156  Identities=8%  Similarity=0.034  Sum_probs=102.1

Q ss_pred             CeeEEEECCCCCEEEEe-cCCCcEEEEEccCcceeee-ecc----cc--CCeEEEEE---ccCCcEEEEee---------
Q 014475           82 PIKPIAANSHGTYIAGG-GQSGDIYMWEVASGRLLKK-WHA----HY--RAVTCLVF---SEDGSFLISGS---------  141 (424)
Q Consensus        82 ~v~~~~~s~~~~~l~~~-~~dg~v~iwd~~~~~~~~~-~~~----~~--~~i~~~~~---~~~~~~l~s~~---------  141 (424)
                      -..+++|.+....|..+ -..+.|..|+...+..... +..    ..  ..+..|.|   .|+++++++..         
T Consensus        14 yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g   93 (334)
T 2p9w_A           14 TPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFAD   93 (334)
T ss_dssp             CCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTS
T ss_pred             CCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccccccc
Confidence            44678898754445444 4789999999875543322 222    11  13578999   68877777543         


Q ss_pred             ----CCCcEEEEeCC---cccchhcccccccceEEeecC-----------CcCceeEEEEEEcCceeEEEEEeCC-CcEE
Q 014475          142 ----EDGCVRIWSLL---TVFEECESQRASHLYLHSFTG-----------HTLRITDIVIGYGGVSATIVSASED-RTCK  202 (424)
Q Consensus       142 ----~dg~i~iwd~~---~~~~~~~~~~~~~~~~~~~~~-----------~~~~i~~~~~~~~~~~~~l~~~~~d-~~v~  202 (424)
                          .+..|..+|+.   ++.         ......+..           ......+++..++|  +..++++.. +.|.
T Consensus        94 ~~~~g~~~v~~~Dl~~~~tg~---------~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~G--naYVt~s~~~~~I~  162 (334)
T 2p9w_A           94 QSSHGASSFHSFNLPLSENSK---------PVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDG--NSYVAFALGMPAIA  162 (334)
T ss_dssp             CCSSSCCEEEEEESSCCTTCC---------CSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTS--CEEEEEEESSCEEE
T ss_pred             cccCCCCEEEEEcCCcCCCCC---------EEEEecCccccccccccccccccCCceeEECCCC--CEEEeCCCCCCeEE
Confidence                25779999987   422         111112111           11347788888887  788888887 8888


Q ss_pred             EEecCCCceeeeee--c-----CcceeEEEECCCCCEEEEEeCCCcEEEEEcCC
Q 014475          203 VWSLLKGRLLRNIV--F-----PSVIDAIALDPAEHVFYAGSRDGSIYIAALNA  249 (424)
Q Consensus       203 iwd~~~~~~~~~~~--~-----~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~  249 (424)
                      ..+.... ....+.  .     ....+.++++|++..|++....|.+..+|+..
T Consensus       163 rV~pdG~-~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~  215 (334)
T 2p9w_A          163 RVSADGK-TVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSK  215 (334)
T ss_dssp             EECTTSC-CEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSS
T ss_pred             EEeCCCC-EEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCC
Confidence            7776543 222221  1     12367999999999999987799999999984

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=97.92  E-value=0.017  Score=55.26  Aligned_cols=180  Identities=9%  Similarity=-0.013  Sum_probs=106.4

Q ss_pred             CCceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCceeeeec-CCCCeeEEEECC
Q 014475           12 DTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSL-PAEPIKPIAANS   90 (424)
Q Consensus        12 dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~~~-~~~~v~~~~~s~   90 (424)
                      ...|+.-|+++......+..  ........++  |.+.+..+..+...++.|..++++......... .......+++.+
T Consensus        14 ~~~I~~i~l~~~~~~~~~~~--~~~~~~~~l~--~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlAvD~   89 (628)
T 4a0p_A           14 RADIRRISLETNNNNVAIPL--TGVKEASALD--FDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMAVDW   89 (628)
T ss_dssp             TTEEEEEESSCTTCEEECCC--CSCSCEEEEE--EETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEET
T ss_pred             CCcEEEEECCCCCcceEEEc--CCCCceEEEE--EECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEEEEe
Confidence            36899999987654433321  1234567777  998777777665545899999988654433222 224577899987


Q ss_pred             CCC-EEEEecCCCcEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEee--CCCcEEEEeCCcccchhcccccccce
Q 014475           91 HGT-YIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGS--EDGCVRIWSLLTVFEECESQRASHLY  167 (424)
Q Consensus        91 ~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~~~  167 (424)
                      .+. +.++-...+.|.+.++........+.........+++.|....|..+.  ..+.|...++....         ...
T Consensus        90 ~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~---------~~~  160 (628)
T 4a0p_A           90 LGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSE---------RTT  160 (628)
T ss_dssp             TTTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS---------CEE
T ss_pred             CCCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCc---------eEE
Confidence            544 445555667899999865433222334445679999998544454443  24677777774311         111


Q ss_pred             EEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCC
Q 014475          168 LHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLK  208 (424)
Q Consensus       168 ~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~  208 (424)
                      +   ...-.....+++++.+. .+.++-...+.|...|+..
T Consensus       161 l---~~~~~~P~GlalD~~~~-~LY~aD~~~~~I~~~d~dG  197 (628)
T 4a0p_A          161 L---VPNVGRANGLTIDYAKR-RLYWTDLDTNLIESSNMLG  197 (628)
T ss_dssp             E---ECSCSSEEEEEEETTTT-EEEEEETTTTEEEEEETTS
T ss_pred             E---ECCCCCcceEEEccccC-EEEEEECCCCEEEEEcCCC
Confidence            1   11233455667766542 3333434455666666654

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=97.89  E-value=0.0052  Score=52.88  Aligned_cols=207  Identities=8%  Similarity=0.043  Sum_probs=122.8

Q ss_pred             ccccCCeEEEEEccCCcEEEEee-CCCcEEEEeCCcccchhcccccccceEEeecC----C--cCceeEEEE---EEcCc
Q 014475          119 HAHYRAVTCLVFSEDGSFLISGS-EDGCVRIWSLLTVFEECESQRASHLYLHSFTG----H--TLRITDIVI---GYGGV  188 (424)
Q Consensus       119 ~~~~~~i~~~~~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~----~--~~~i~~~~~---~~~~~  188 (424)
                      +.......++.|++....|..++ ..|+|..||...+.         ...+ .+..    .  ...+..+.+   .+++ 
T Consensus         9 ~~~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~---------~~~~-~~~~~s~~g~~~~~~sGl~~~~~D~~g-   77 (334)
T 2p9w_A            9 KVKNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQS---------HFNV-VIDGASSNGDGEQQMSGLSLLTHDNSK-   77 (334)
T ss_dssp             CCTTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCC---------EEEE-CCTTTCCSSCCSEEEEEEEESSSSSCC-
T ss_pred             cCcccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCe---------EEEE-ecCCccccCCCcceeeEEEEeccCCCC-
Confidence            33444556789988555555555 78999999985321         1111 1221    1  113467777   4554 


Q ss_pred             eeEEEEEe-------------CCCcEEEEecC---CCceeeeeecC--------------cceeEEEECCCCCEEEEEeC
Q 014475          189 SATIVSAS-------------EDRTCKVWSLL---KGRLLRNIVFP--------------SVIDAIALDPAEHVFYAGSR  238 (424)
Q Consensus       189 ~~~l~~~~-------------~d~~v~iwd~~---~~~~~~~~~~~--------------~~i~~~~~~~~~~~l~~~~~  238 (424)
                       .++++..             .+..|..+|+.   +++.+......              .....++..++|+..++++.
T Consensus        78 -rL~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~  156 (334)
T 2p9w_A           78 -RLFAVMKNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFAL  156 (334)
T ss_dssp             -EEEEEEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEE
T ss_pred             -cEEEEEcccccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCC
Confidence             6666543             26779999999   78877666521              25889999999999999988


Q ss_pred             C-CcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCCCcE--EEEEe-cc---C
Q 014475          239 D-GSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNI--VRMFR-LA---K  310 (424)
Q Consensus       239 d-g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~--~~~~~-~~---~  310 (424)
                      . +.|..++.+......    +.............+.|+++| ++.|++....|.|.-+|+.+...  +..-. +.   -
T Consensus       157 ~~~~I~rV~pdG~~~~~----~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~pv~~~v~~~~~G~~~~~  232 (334)
T 2p9w_A          157 GMPAIARVSADGKTVST----FAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKPYAWPEPVKINGDFGTL  232 (334)
T ss_dssp             SSCEEEEECTTSCCEEE----EEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSSSCCCEECEESSCCCCC
T ss_pred             CCCeEEEEeCCCCEEee----eeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCCcceeecccccCCcccc
Confidence            8 887777766532100    000000011223467899999 88888777799999999885432  21110 21   1


Q ss_pred             CCeeEE-EEEecCcee-eeccCCCceeeccCCC
Q 014475          311 GPVNNI-LVVRRPLYL-NLGSFSNPHTSSRRHG  341 (424)
Q Consensus       311 ~~v~~l-~~s~~~~~l-~~~~~d~~i~iw~~~~  341 (424)
                      .....+ ..-.+|+.| ++....+.+.+.+..+
T Consensus       233 ~~~dgilp~~~~G~vllV~~~~~~~~~l~S~Dg  265 (334)
T 2p9w_A          233 SGTEKIVTVPVGNESVLVGARAPYAISFRSWDN  265 (334)
T ss_dssp             TTEEEEEEEEETTEEEEEEEETTEEEEEECSST
T ss_pred             cCcccccccccCCEEEEEEcCCCCEEEEECCCC
Confidence            123343 333577774 4444555555555443

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=97.89  E-value=0.0039  Score=53.78  Aligned_cols=217  Identities=12%  Similarity=0.206  Sum_probs=108.7

Q ss_pred             eeEEEEECCCCceeeeec-CCCCeeEEEECCCCCEEEEecCC-----CcEEEEEccCcceee--eeccccCCeEEEEEcc
Q 014475           61 GSILYWSWSKPQVEVKSL-PAEPIKPIAANSHGTYIAGGGQS-----GDIYMWEVASGRLLK--KWHAHYRAVTCLVFSE  132 (424)
Q Consensus        61 g~i~vwd~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~d-----g~v~iwd~~~~~~~~--~~~~~~~~i~~~~~~~  132 (424)
                      ..+..+|..+.+...... +..........-++.+++.|+.+     ..+.+||+.+.+-..  .+.........+.+  
T Consensus        30 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--  107 (302)
T 2xn4_A           30 RSVECYDFKEERWHQVAELPSRRCRAGMVYMAGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAVL--  107 (302)
T ss_dssp             CCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--
T ss_pred             CcEEEEcCcCCcEeEcccCCcccccceEEEECCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEEE--
Confidence            467888887765432221 11111111112267778888754     358899987764322  22222222222333  


Q ss_pred             CCcEEEEeeCCC-----cEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCC-------Cc
Q 014475          133 DGSFLISGSEDG-----CVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASED-------RT  200 (424)
Q Consensus       133 ~~~~l~s~~~dg-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d-------~~  200 (424)
                      +++.++.|+.++     .+.+||+.+.         ....+..+...... .+++. .++  ..++.|+.+       ..
T Consensus       108 ~~~iyv~GG~~~~~~~~~~~~~d~~~~---------~W~~~~~~p~~r~~-~~~~~-~~~--~iyv~GG~~~~~~~~~~~  174 (302)
T 2xn4_A          108 NGLLYAVGGFDGSTGLSSVEAYNIKSN---------EWFHVAPMNTRRSS-VGVGV-VGG--LLYAVGGYDVASRQCLST  174 (302)
T ss_dssp             TTEEEEEEEECSSCEEEEEEEEETTTT---------EEEEECCCSSCCBS-CEEEE-ETT--EEEEECCEETTTTEECCC
T ss_pred             CCEEEEEcCCCCCccCceEEEEeCCCC---------eEeecCCCCCcccC-ceEEE-ECC--EEEEEeCCCCCCCccccE
Confidence            577778887654     4677887652         11112111111111 11222 244  666766542       35


Q ss_pred             EEEEecCCCceeeeee--cCcceeEEEECCCCCEEEEEeCC-----CcEEEEEcCCCCCCCCCcCceeeeeecccCcCeE
Q 014475          201 CKVWSLLKGRLLRNIV--FPSVIDAIALDPAEHVFYAGSRD-----GSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVT  273 (424)
Q Consensus       201 v~iwd~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~  273 (424)
                      +.+||+.+.+-...-.  .+..-.+++. -++.+++.|+.+     ..+.+||..+..       +..+..+........
T Consensus       175 ~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~-------W~~~~~~~~~r~~~~  246 (302)
T 2xn4_A          175 VECYNATTNEWTYIAEMSTRRSGAGVGV-LNNLLYAVGGHDGPLVRKSVEVYDPTTNA-------WRQVADMNMCRRNAG  246 (302)
T ss_dssp             EEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCBSSSSBCCCEEEEETTTTE-------EEEECCCSSCCBSCE
T ss_pred             EEEEeCCCCcEEECCCCccccccccEEE-ECCEEEEECCCCCCcccceEEEEeCCCCC-------EeeCCCCCCccccCe
Confidence            8899988765333211  1111122222 256777777654     368899987753       333332221111112


Q ss_pred             EEEecCCCEEEEeCCCC-----cEEEEeCCCCc
Q 014475          274 CLAYSTGDLLISGSEDG-----MVRVWDPITHN  301 (424)
Q Consensus       274 ~~~~~~~~~l~t~~~dg-----~i~iwd~~~~~  301 (424)
                       ++...+.+++.|+.++     .+.+||+.+.+
T Consensus       247 -~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~  278 (302)
T 2xn4_A          247 -VCAVNGLLYVVGGDDGSCNLASVEYYNPTTDK  278 (302)
T ss_dssp             -EEEETTEEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred             -EEEECCEEEEECCcCCCcccccEEEEcCCCCe
Confidence             2222367777777553     47888877654

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=97.87  E-value=0.0057  Score=52.86  Aligned_cols=227  Identities=10%  Similarity=0.047  Sum_probs=113.6

Q ss_pred             CCEEEEecC--CCcEEEEEccCccee--eeeccccCCeEEEEEccCCcEEEEeeCC----CcEEEEeCCcccchhccccc
Q 014475           92 GTYIAGGGQ--SGDIYMWEVASGRLL--KKWHAHYRAVTCLVFSEDGSFLISGSED----GCVRIWSLLTVFEECESQRA  163 (424)
Q Consensus        92 ~~~l~~~~~--dg~v~iwd~~~~~~~--~~~~~~~~~i~~~~~~~~~~~l~s~~~d----g~i~iwd~~~~~~~~~~~~~  163 (424)
                      +.+++.|+.  ...+.+||..+++-.  ..+.........+.+  ++..++.|+.+    ..+.+||+.+.         
T Consensus        12 ~~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~d~~~~---------   80 (306)
T 3ii7_A           12 DYRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVFW--DNVVYILGGSQLFPIKRMDCYNVVKD---------   80 (306)
T ss_dssp             CEEEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEEE--TTEEEEECCBSSSBCCEEEEEETTTT---------
T ss_pred             ceEEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEEE--CCEEEEEeCCCCCCcceEEEEeCCCC---------
Confidence            345556654  356999998876432  222222222223332  57777888754    56888888652         


Q ss_pred             ccceEEeecCCcCceeEEEEEEcCceeEEEEEeCC------CcEEEEecCCCceeeeee--cCcceeEEEECCCCCEEEE
Q 014475          164 SHLYLHSFTGHTLRITDIVIGYGGVSATIVSASED------RTCKVWSLLKGRLLRNIV--FPSVIDAIALDPAEHVFYA  235 (424)
Q Consensus       164 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d------~~v~iwd~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~  235 (424)
                      ....+..+......  ..+...++  ..++.|+.+      ..+.+||+.+.+-...-.  .+..-.+++. -++++++.
T Consensus        81 ~W~~~~~~p~~r~~--~~~~~~~~--~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~  155 (306)
T 3ii7_A           81 SWYSKLGPPTPRDS--LAACAAEG--KIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVE-ANGLIYVC  155 (306)
T ss_dssp             EEEEEECCSSCCBS--CEEEEETT--EEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEE
T ss_pred             eEEECCCCCccccc--eeEEEECC--EEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEE-ECCEEEEE
Confidence            12222222211111  11122344  677777765      458899988765333222  1111122222 25666666


Q ss_pred             EeC---------CCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecCCCEEEEeCCC-----CcEEEEeCCCCc
Q 014475          236 GSR---------DGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTGDLLISGSED-----GMVRVWDPITHN  301 (424)
Q Consensus       236 ~~~---------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~t~~~d-----g~i~iwd~~~~~  301 (424)
                      |+.         -..+.+||..+..       +..+..+......-. +....+.+++.|+.+     ..+.+||+.+.+
T Consensus       156 GG~~~~~~~~~~~~~~~~yd~~~~~-------W~~~~~~p~~r~~~~-~~~~~~~i~v~GG~~~~~~~~~~~~yd~~~~~  227 (306)
T 3ii7_A          156 GGSLGNNVSGRVLNSCEVYDPATET-------WTELCPMIEARKNHG-LVFVKDKIFAVGGQNGLGGLDNVEYYDIKLNE  227 (306)
T ss_dssp             CCEESCTTTCEECCCEEEEETTTTE-------EEEECCCSSCCBSCE-EEEETTEEEEECCEETTEEBCCEEEEETTTTE
T ss_pred             CCCCCCCCcccccceEEEeCCCCCe-------EEECCCccchhhcce-EEEECCEEEEEeCCCCCCCCceEEEeeCCCCc
Confidence            653         3458899988764       333332222112222 222246777777754     358899988764


Q ss_pred             EEEEEeccCCCeeEEEEEecCceeeeccCCC-----ceeeccCCCC
Q 014475          302 IVRMFRLAKGPVNNILVVRRPLYLNLGSFSN-----PHTSSRRHGS  342 (424)
Q Consensus       302 ~~~~~~~~~~~v~~l~~s~~~~~l~~~~~d~-----~i~iw~~~~~  342 (424)
                      -...-..........+..-+++.++.|+.++     .+..+|..+.
T Consensus       228 W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~yd~~~~  273 (306)
T 3ii7_A          228 WKMVSPMPWKGVTVKCAAVGSIVYVLAGFQGVGRLGHILEYNTETD  273 (306)
T ss_dssp             EEECCCCSCCBSCCEEEEETTEEEEEECBCSSSBCCEEEEEETTTT
T ss_pred             EEECCCCCCCccceeEEEECCEEEEEeCcCCCeeeeeEEEEcCCCC
Confidence            2221111111111122223677778887553     3555665543

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=97.85  E-value=0.011  Score=52.25  Aligned_cols=239  Identities=12%  Similarity=0.027  Sum_probs=122.9

Q ss_pred             CCeeEEEECCCCC-EEEEecCCCcEEEEEccCccee---eee----ccccCCeEEEEEccC----CcEEEEeeC------
Q 014475           81 EPIKPIAANSHGT-YIAGGGQSGDIYMWEVASGRLL---KKW----HAHYRAVTCLVFSED----GSFLISGSE------  142 (424)
Q Consensus        81 ~~v~~~~~s~~~~-~l~~~~~dg~v~iwd~~~~~~~---~~~----~~~~~~i~~~~~~~~----~~~l~s~~~------  142 (424)
                      .....|+|.|+|+ ++++ ...|.|++++.. +...   ..+    .........++++|+    +.+.++-+.      
T Consensus        18 ~~P~~i~~~pdG~~l~V~-e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~   95 (353)
T 2g8s_A           18 DHPWALAFLPDNHGMLIT-LRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGK   95 (353)
T ss_dssp             SSEEEEEECSTTCCEEEE-ETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSC
T ss_pred             CCcEEEEEcCCCCEEEEE-eCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCC
Confidence            4568999999999 5555 567899999853 3321   111    112345789999995    444444332      


Q ss_pred             -CCcEEEEeCCcccchhcccccccceEEeec---CCcCceeEEEEEEcCceeEEEEEeC-------------CCcEEEEe
Q 014475          143 -DGCVRIWSLLTVFEECESQRASHLYLHSFT---GHTLRITDIVIGYGGVSATIVSASE-------------DRTCKVWS  205 (424)
Q Consensus       143 -dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~---~~~~~i~~~~~~~~~~~~~l~~~~~-------------d~~v~iwd  205 (424)
                       ...|..|++........   .....+..+.   ........++|.|++  .+.++.+.             .|.|.-+|
T Consensus        96 ~~~~v~r~~~~~~~~~~~---~~~~i~~~~p~~~~~~h~~~~l~~~pdG--~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~  170 (353)
T 2g8s_A           96 AGTAVGYGRLSDDLSKVT---DFRTVFRQMPKLSTGNHFGGRLVFDGKG--YLFIALGENNQRPTAQDLDKLQGKLVRLT  170 (353)
T ss_dssp             EEEEEEEEEECTTSSBEE---EEEEEEECSSCCBSSSCCCCCEEECSSS--EEEEEECCTTCGGGGGCTTSCTTEEEEEE
T ss_pred             ceeEEEEEEECCCCCCCC---ceEEEEEECCCCCCCcccCccEEECCCC--cEEEEECCCCCCCccCCCCCCCeEEEEEC
Confidence             23466666543110000   0011111111   111223579999987  55555433             24566667


Q ss_pred             cCCCc------------eeeeee-cCcceeEEEECCCCCEEEEEeCC--CcEEEEEcCCCCCCC----------------
Q 014475          206 LLKGR------------LLRNIV-FPSVIDAIALDPAEHVFYAGSRD--GSIYIAALNAESPST----------------  254 (424)
Q Consensus       206 ~~~~~------------~~~~~~-~~~~i~~~~~~~~~~~l~~~~~d--g~i~i~d~~~~~~~~----------------  254 (424)
                      ....-            ....+. .-.....++|+|....|+++...  +.=.|.-+..+..-.                
T Consensus       171 ~dG~~p~~npf~~~~~~~~~i~a~G~rnp~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~~  250 (353)
T 2g8s_A          171 DQGEIPDDNPFIKESGVRAEIWSYGIRNPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKIP  250 (353)
T ss_dssp             TTSCCCTTCTTTTSTTSCTTEEEECCSEEEEEEEETTTTEEEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSCCT
T ss_pred             CCCCCCCCCCCcCCCCCCccEEEEcCcCccceEEECCCCCEEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCccC
Confidence            64320            111222 22457889999943344443322  111222222211100                


Q ss_pred             ------CCcCceeeeeecccCcCeEEEEecC--------CCEEEEeCCCCcEEEEeCCCCcEEEEEe---ccCCCeeEEE
Q 014475          255 ------SSYGMHIIGSLSDHSKAVTCLAYST--------GDLLISGSEDGMVRVWDPITHNIVRMFR---LAKGPVNNIL  317 (424)
Q Consensus       255 ------~~~~~~~~~~~~~~~~~i~~~~~~~--------~~~l~t~~~dg~i~iwd~~~~~~~~~~~---~~~~~v~~l~  317 (424)
                            ......++..+. +...+..+.|..        +.++++.-..+.|...++..++.+....   .....+..++
T Consensus       251 ~~~~~~~~~~~~P~~~~~-~~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~  329 (353)
T 2g8s_A          251 EAKGEIVAGTEQPVFYWK-DSPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVR  329 (353)
T ss_dssp             TCCBSSCTTSCCCSEEES-SCCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEE
T ss_pred             cccCCCCCCccCCeEEeC-CCcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEE
Confidence                  000011122222 234567777752        5677766677888888877665443322   2235789999


Q ss_pred             EEecCceeee
Q 014475          318 VVRRPLYLNL  327 (424)
Q Consensus       318 ~s~~~~~l~~  327 (424)
                      +.|||.+.++
T Consensus       330 ~~pdG~lyv~  339 (353)
T 2g8s_A          330 TGPDGYLYVL  339 (353)
T ss_dssp             ECTTSCEEEE
T ss_pred             ECCCCcEEEE
Confidence            9999986664

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=97.80  E-value=0.014  Score=50.41  Aligned_cols=215  Identities=10%  Similarity=0.089  Sum_probs=111.8

Q ss_pred             eeEEEEECCCCceeeeec-C--CCCeeEEEECCCCCEEEEecCC----CcEEEEEccCcceee--eeccccCCeEEEEEc
Q 014475           61 GSILYWSWSKPQVEVKSL-P--AEPIKPIAANSHGTYIAGGGQS----GDIYMWEVASGRLLK--KWHAHYRAVTCLVFS  131 (424)
Q Consensus        61 g~i~vwd~~~~~~~~~~~-~--~~~v~~~~~s~~~~~l~~~~~d----g~v~iwd~~~~~~~~--~~~~~~~~i~~~~~~  131 (424)
                      ..+.+||..+.+-..... +  .....++.  -++.+++.|+.+    ..+.+||+.+.+-..  .+.........+.+ 
T Consensus        24 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-  100 (306)
T 3ii7_A           24 QSCRYFNPKDYSWTDIRCPFEKRRDAACVF--WDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAACAA-  100 (306)
T ss_dssp             TSEEEEETTTTEEEECCCCSCCCBSCEEEE--ETTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBSCEEEEE-
T ss_pred             ceEEEecCCCCCEecCCCCCcccceeEEEE--ECCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccceeEEEE-
Confidence            578889988765432221 1  11112222  367777888755    568999988764322  22222222222333 


Q ss_pred             cCCcEEEEeeCC------CcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeC--------
Q 014475          132 EDGSFLISGSED------GCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASE--------  197 (424)
Q Consensus       132 ~~~~~l~s~~~d------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~--------  197 (424)
                       +++.++.|+.+      ..+.+||+.+..         ...+..+...... .++ ...++  ..++.|+.        
T Consensus       101 -~~~iyv~GG~~~~~~~~~~~~~~d~~~~~---------W~~~~~~p~~r~~-~~~-~~~~~--~iyv~GG~~~~~~~~~  166 (306)
T 3ii7_A          101 -EGKIYTSGGSEVGNSALYLFECYDTRTES---------WHTKPSMLTQRCS-HGM-VEANG--LIYVCGGSLGNNVSGR  166 (306)
T ss_dssp             -TTEEEEECCBBTTBSCCCCEEEEETTTTE---------EEEECCCSSCCBS-CEE-EEETT--EEEEECCEESCTTTCE
T ss_pred             -CCEEEEECCCCCCCcEeeeEEEEeCCCCc---------eEeCCCCcCCcce-eEE-EEECC--EEEEECCCCCCCCccc
Confidence             57777887765      458888986521         1111111111111 111 22344  66666653        


Q ss_pred             -CCcEEEEecCCCceeeeee--cCcceeEEEECCCCCEEEEEeCC-----CcEEEEEcCCCCCCCCCcCceeeeeecccC
Q 014475          198 -DRTCKVWSLLKGRLLRNIV--FPSVIDAIALDPAEHVFYAGSRD-----GSIYIAALNAESPSTSSYGMHIIGSLSDHS  269 (424)
Q Consensus       198 -d~~v~iwd~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~  269 (424)
                       -..+.+||+.+.+-...-.  .+..-.+++.. ++++++.|+.+     ..+.+||+.+..       +..+..+....
T Consensus       167 ~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~i~v~GG~~~~~~~~~~~~yd~~~~~-------W~~~~~~p~~r  238 (306)
T 3ii7_A          167 VLNSCEVYDPATETWTELCPMIEARKNHGLVFV-KDKIFAVGGQNGLGGLDNVEYYDIKLNE-------WKMVSPMPWKG  238 (306)
T ss_dssp             ECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEECCEETTEEBCCEEEEETTTTE-------EEECCCCSCCB
T ss_pred             ccceEEEeCCCCCeEEECCCccchhhcceEEEE-CCEEEEEeCCCCCCCCceEEEeeCCCCc-------EEECCCCCCCc
Confidence             3458899988765332222  11111222222 56677776643     468899988764       33333332222


Q ss_pred             cCeEEEEecCCCEEEEeCCC-----CcEEEEeCCCCc
Q 014475          270 KAVTCLAYSTGDLLISGSED-----GMVRVWDPITHN  301 (424)
Q Consensus       270 ~~i~~~~~~~~~~l~t~~~d-----g~i~iwd~~~~~  301 (424)
                      ....++.+ .+.+++.|+.+     ..+.+||+.+.+
T Consensus       239 ~~~~~~~~-~~~i~v~GG~~~~~~~~~~~~yd~~~~~  274 (306)
T 3ii7_A          239 VTVKCAAV-GSIVYVLAGFQGVGRLGHILEYNTETDK  274 (306)
T ss_dssp             SCCEEEEE-TTEEEEEECBCSSSBCCEEEEEETTTTE
T ss_pred             cceeEEEE-CCEEEEEeCcCCCeeeeeEEEEcCCCCe
Confidence            22233333 46778888754     468889987753

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=97.80  E-value=0.0047  Score=53.52  Aligned_cols=219  Identities=11%  Similarity=0.093  Sum_probs=107.8

Q ss_pred             CCCCEEEEecCC----CcEEEEEccCcceee--eeccccCCeEEEEEccCCcEEEEeeC----C-----CcEEEEeCCcc
Q 014475           90 SHGTYIAGGGQS----GDIYMWEVASGRLLK--KWHAHYRAVTCLVFSEDGSFLISGSE----D-----GCVRIWSLLTV  154 (424)
Q Consensus        90 ~~~~~l~~~~~d----g~v~iwd~~~~~~~~--~~~~~~~~i~~~~~~~~~~~l~s~~~----d-----g~i~iwd~~~~  154 (424)
                      -++.+++.|+.+    ..+.+||+.+.+-..  .+.........+.+  ++..++.|+.    +     ..+.+||+.+.
T Consensus        23 ~~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~  100 (308)
T 1zgk_A           23 VGRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCVV--GGLLYAVGGRNNSPDGNTDSSALDCYNPMTN  100 (308)
T ss_dssp             CCCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCEEEETTEEEECCCEEEEETTTT
T ss_pred             CCCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccceEEEE--CCEEEEECCCcCCCCCCeecceEEEECCCCC
Confidence            356667777632    358899987764322  22211111222222  5677777775    2     35788888652


Q ss_pred             cchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCC-----CcEEEEecCCCceeeeee--cCcceeEEEEC
Q 014475          155 FEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASED-----RTCKVWSLLKGRLLRNIV--FPSVIDAIALD  227 (424)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d-----~~v~iwd~~~~~~~~~~~--~~~~i~~~~~~  227 (424)
                      .         ...+..+......- +++ ..++  ..++.|+.+     ..+.+||+.+.+-...-.  .+..-.+++..
T Consensus       101 ~---------W~~~~~~p~~r~~~-~~~-~~~~--~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~  167 (308)
T 1zgk_A          101 Q---------WSPCAPMSVPRNRI-GVG-VIDG--HIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL  167 (308)
T ss_dssp             E---------EEECCCCSSCCBTC-EEE-EETT--EEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE
T ss_pred             e---------EeECCCCCcCcccc-EEE-EECC--EEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE
Confidence            1         11111111111111 112 2244  677776643     358889987765332222  11111122222


Q ss_pred             CCCCEEEEEeCC-----CcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecCCCEEEEeCCC-----CcEEEEeC
Q 014475          228 PAEHVFYAGSRD-----GSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTGDLLISGSED-----GMVRVWDP  297 (424)
Q Consensus       228 ~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~t~~~d-----g~i~iwd~  297 (424)
                       ++.+++.|+.+     ..+.+||+.+..       +..+..+........++.+ .+.+++.|+.+     ..+.+||+
T Consensus       168 -~~~iyv~GG~~~~~~~~~~~~yd~~~~~-------W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~  238 (308)
T 1zgk_A          168 -NRLLYAVGGFDGTNRLNSAECYYPERNE-------WRMITAMNTIRSGAGVCVL-HNCIYAAGGYDGQDQLNSVERYDV  238 (308)
T ss_dssp             -TTEEEEECCBCSSCBCCCEEEEETTTTE-------EEECCCCSSCCBSCEEEEE-TTEEEEECCBCSSSBCCCEEEEET
T ss_pred             -CCEEEEEeCCCCCCcCceEEEEeCCCCe-------EeeCCCCCCccccceEEEE-CCEEEEEeCCCCCCccceEEEEeC
Confidence             56677777654     468899987754       2323222222222222222 46777777754     56899998


Q ss_pred             CCCcEEEEEeccCCCeeEEEEEecCceeeeccCCC
Q 014475          298 ITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSN  332 (424)
Q Consensus       298 ~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~d~  332 (424)
                      .+.+-...-..........+..-+++.++.|+.++
T Consensus       239 ~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~  273 (308)
T 1zgk_A          239 ETETWTFVAPMKHRRSALGITVHQGRIYVLGGYDG  273 (308)
T ss_dssp             TTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCS
T ss_pred             CCCcEEECCCCCCCccceEEEEECCEEEEEcCcCC
Confidence            87643221111111111222233677778877654

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=97.71  E-value=0.016  Score=50.34  Aligned_cols=225  Identities=11%  Similarity=0.004  Sum_probs=113.3

Q ss_pred             eEEEeecCCCCCceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCC-----C-----ceeEEEEECCCC
Q 014475            2 ELLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSA-----S-----SGSILYWSWSKP   71 (424)
Q Consensus         2 e~~lat~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~-----~-----~g~i~vwd~~~~   71 (424)
                      |.+++.|+   ..+.+||..+++-.. .. ...+.....+..  ...+++.++.+|.     .     ...+.+||..+.
T Consensus         5 ~~l~~~GG---~~~~~yd~~~~~W~~-~~-~~~p~~r~~~~~--~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~   77 (315)
T 4asc_A            5 DLIFMISE---EGAVAYDPAANECYC-AS-LSSQVPKNHVSL--VTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDS   77 (315)
T ss_dssp             EEEEEEET---TEEEEEETTTTEEEE-EE-CCCCSCSSEEEE--ECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTT
T ss_pred             eEEEEEcC---CceEEECCCCCeEec-CC-CCCCCCccceEE--EEECCEEEEEcCcccCCCCCccccccceEEecCCCC
Confidence            45566666   479999999887543 22 111111222222  3356777777763     1     123778888776


Q ss_pred             ceeeeecCCC---CeeEEEECCCCCEEEEecCC--------CcEEEEEccCccee--eeeccccCCeEEEEEccCCcEEE
Q 014475           72 QVEVKSLPAE---PIKPIAANSHGTYIAGGGQS--------GDIYMWEVASGRLL--KKWHAHYRAVTCLVFSEDGSFLI  138 (424)
Q Consensus        72 ~~~~~~~~~~---~v~~~~~s~~~~~l~~~~~d--------g~v~iwd~~~~~~~--~~~~~~~~~i~~~~~~~~~~~l~  138 (424)
                      +.........   ....+.+  ++.+++.|+.+        ..+.+||+.+.+-.  ..+.........+.  .+++.++
T Consensus        78 ~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv  153 (315)
T 4asc_A           78 EWLGMPPLPSPRCLFGLGEA--LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLS--HMDLVYV  153 (315)
T ss_dssp             EEEECCCBSSCEESCEEEEE--TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE--ETTEEEE
T ss_pred             eEEECCCCCcchhceeEEEE--CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEE--ECCEEEE
Confidence            5432211111   1112222  56777777742        35899999876422  22222222222222  3567777


Q ss_pred             EeeC-C-----CcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCC-----cEEEEecC
Q 014475          139 SGSE-D-----GCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDR-----TCKVWSLL  207 (424)
Q Consensus       139 s~~~-d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~-----~v~iwd~~  207 (424)
                      .|+. +     ..+.+||+.+..         ...+..+...... .+ +...++  ..++.|+.++     .+.+||+.
T Consensus       154 ~GG~~~~~~~~~~~~~yd~~~~~---------W~~~~~~p~~r~~-~~-~~~~~~--~iyv~GG~~~~~~~~~~~~yd~~  220 (315)
T 4asc_A          154 IGGKGSDRKCLNKMCVYDPKKFE---------WKELAPMQTARSL-FG-ATVHDG--RIIVAAGVTDTGLTSSAEVYSIT  220 (315)
T ss_dssp             ECCBCTTSCBCCCEEEEETTTTE---------EEECCCCSSCCBS-CE-EEEETT--EEEEEEEECSSSEEEEEEEEETT
T ss_pred             EeCCCCCCcccceEEEEeCCCCe---------EEECCCCCCchhc-eE-EEEECC--EEEEEeccCCCCccceEEEEECC
Confidence            7776 2     358889886521         1111111111111 11 222244  7777777654     48889988


Q ss_pred             CCceeeeee--cCcceeEEEECCCCCEEEEEeCC--------------CcEEEEEcCCCC
Q 014475          208 KGRLLRNIV--FPSVIDAIALDPAEHVFYAGSRD--------------GSIYIAALNAES  251 (424)
Q Consensus       208 ~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~d--------------g~i~i~d~~~~~  251 (424)
                      +.+-...-.  .+..-.+++.. ++++++.|+.+              ..+.+||+.+..
T Consensus       221 ~~~W~~~~~~p~~r~~~~~~~~-~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~  279 (315)
T 4asc_A          221 DNKWAPFEAFPQERSSLSLVSL-VGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKK  279 (315)
T ss_dssp             TTEEEEECCCSSCCBSCEEEEE-TTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTE
T ss_pred             CCeEEECCCCCCcccceeEEEE-CCEEEEECCccccCcCCccccccccCcEEEecCCCCh
Confidence            764333222  11111222222 56677777653              236778877653

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=97.70  E-value=0.0055  Score=53.04  Aligned_cols=229  Identities=10%  Similarity=0.090  Sum_probs=114.8

Q ss_pred             cCCCccccCCCC---ceeEEEEECCCCceeeeec-CCCCe-eEEEECCCCCEEEEecC----C-----CcEEEEEccCcc
Q 014475           48 ASSQLREQPSAS---SGSILYWSWSKPQVEVKSL-PAEPI-KPIAANSHGTYIAGGGQ----S-----GDIYMWEVASGR  113 (424)
Q Consensus        48 ~~~~~l~~~~~~---~g~i~vwd~~~~~~~~~~~-~~~~v-~~~~~s~~~~~l~~~~~----d-----g~v~iwd~~~~~  113 (424)
                      -++..++.+|..   -..+.++|..+.+...... +.... .++. ..++.+++.|+.    +     ..+.+||+.+.+
T Consensus        23 ~~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~-~~~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~  101 (308)
T 1zgk_A           23 VGRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGLAGC-VVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQ  101 (308)
T ss_dssp             CCCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEE-EETTEEEEECCEEEETTEEEECCCEEEEETTTTE
T ss_pred             CCCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccceEE-EECCEEEEECCCcCCCCCCeecceEEEECCCCCe
Confidence            345555555521   1478889987765433221 11111 1222 226777777776    2     458899987764


Q ss_pred             eee--eeccccCCeEEEEEccCCcEEEEeeCC-----CcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEc
Q 014475          114 LLK--KWHAHYRAVTCLVFSEDGSFLISGSED-----GCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYG  186 (424)
Q Consensus       114 ~~~--~~~~~~~~i~~~~~~~~~~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  186 (424)
                      -..  .+.........+.+  +++.++.|+.+     ..+.+||+.+..         ...+..+......- +++. .+
T Consensus       102 W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~---------W~~~~~~p~~r~~~-~~~~-~~  168 (308)
T 1zgk_A          102 WSPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERDE---------WHLVAPMLTRRIGV-GVAV-LN  168 (308)
T ss_dssp             EEECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTTE---------EEECCCCSSCCBSC-EEEE-ET
T ss_pred             EeECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCCe---------EeECCCCCccccce-EEEE-EC
Confidence            322  22222222223333  57777777644     357888886521         11111111111111 1222 24


Q ss_pred             CceeEEEEEeCC-----CcEEEEecCCCceeeeee--cCcceeEEEECCCCCEEEEEeCC-----CcEEEEEcCCCCCCC
Q 014475          187 GVSATIVSASED-----RTCKVWSLLKGRLLRNIV--FPSVIDAIALDPAEHVFYAGSRD-----GSIYIAALNAESPST  254 (424)
Q Consensus       187 ~~~~~l~~~~~d-----~~v~iwd~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~  254 (424)
                      +  ..++.|+.+     ..+.+||+.+.+-...-.  .+..-.+++.. ++.+++.|+.+     ..+.+||+.+..   
T Consensus       169 ~--~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~~~~---  242 (308)
T 1zgk_A          169 R--LLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL-HNCIYAAGGYDGQDQLNSVERYDVETET---  242 (308)
T ss_dssp             T--EEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TTEEEEECCBCSSSBCCCEEEEETTTTE---
T ss_pred             C--EEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE-CCEEEEEeCCCCCCccceEEEEeCCCCc---
Confidence            4  677777654     458899987765332211  11111222222 66777777654     468999988764   


Q ss_pred             CCcCceeeeeecccCcCeEEEEecCCCEEEEeCCC-----CcEEEEeCCCCc
Q 014475          255 SSYGMHIIGSLSDHSKAVTCLAYSTGDLLISGSED-----GMVRVWDPITHN  301 (424)
Q Consensus       255 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~t~~~d-----g~i~iwd~~~~~  301 (424)
                          +..+..+........ ++...+.+++.|+.+     ..+.+||+.+.+
T Consensus       243 ----W~~~~~~p~~r~~~~-~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~  289 (308)
T 1zgk_A          243 ----WTFVAPMKHRRSALG-ITVHQGRIYVLGGYDGHTFLDSVECYDPDTDT  289 (308)
T ss_dssp             ----EEECCCCSSCCBSCE-EEEETTEEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred             ----EEECCCCCCCccceE-EEEECCEEEEEcCcCCCcccceEEEEcCCCCE
Confidence                333332222112222 222236777777754     346777877653

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=97.61  E-value=0.031  Score=49.06  Aligned_cols=226  Identities=13%  Similarity=0.094  Sum_probs=126.1

Q ss_pred             CCeeEEEECCCCCEEEEec------------CCCcEEEEEccCcc-eeeee--cc-----ccCCeEEEEEcc--CCc-EE
Q 014475           81 EPIKPIAANSHGTYIAGGG------------QSGDIYMWEVASGR-LLKKW--HA-----HYRAVTCLVFSE--DGS-FL  137 (424)
Q Consensus        81 ~~v~~~~~s~~~~~l~~~~------------~dg~v~iwd~~~~~-~~~~~--~~-----~~~~i~~~~~~~--~~~-~l  137 (424)
                      .....+...|+|..+++++            .+|.|.++|+.+.. ....+  .+     .......+.+.+  ++. +|
T Consensus        50 ~G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L  129 (355)
T 3sre_A           50 NGSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYL  129 (355)
T ss_dssp             SCCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEE
T ss_pred             CCcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEE
Confidence            3456777788876655542            68999999987431 11222  22     234677788766  343 34


Q ss_pred             EEe-eC--CCcEEEEeCCcccchhcccccccceEEeecCC-cCceeEEEEEEcCceeEEEEEe-----------------
Q 014475          138 ISG-SE--DGCVRIWSLLTVFEECESQRASHLYLHSFTGH-TLRITDIVIGYGGVSATIVSAS-----------------  196 (424)
Q Consensus       138 ~s~-~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~~l~~~~-----------------  196 (424)
                      +++ ..  +.++.+|++....       .....+..+.+. -...+++.+.+++  .+.++..                 
T Consensus       130 ~Vvnh~~~~s~ielf~~d~~~-------~~~~~~~~~~g~~~~~pND~~v~~~G--~fyvt~~~~ftd~~~~~~e~~~~~  200 (355)
T 3sre_A          130 LVVNHPGSSSTVEVFKFQEEE-------KSLLHLKTIRHKLLPSVNDIVAVGPE--HFYATNDHYFIDPYLKSWEMHLGL  200 (355)
T ss_dssp             EEEECSTTCCEEEEEEEETTT-------TEEEEEEEECCTTCSSEEEEEEEETT--EEEEEESCSCSSHHHHHHHHHTTC
T ss_pred             EEEECCCCCCeEEEEEEECCC-------CEEEEEeccccCCCCCCceEEEeCCC--CEEecCCcEeCCcccccchhhccC
Confidence            433 32  4577787774321       112233444432 3457889999988  6666543                 


Q ss_pred             CCCcEEEEecCCCceeeeeecCcceeEEEECCCCCEEEEEe-CCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEE
Q 014475          197 EDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGS-RDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCL  275 (424)
Q Consensus       197 ~d~~v~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  275 (424)
                      ..|.|..+|.  ++.......-...+.++|+|+++.++++. ..+.|+.|+++.....      .....+ ......-.+
T Consensus       201 ~~g~vyr~d~--~~~~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l------~~~~~~-~~~g~PDGi  271 (355)
T 3sre_A          201 AWSFVTYYSP--NDVRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTL------TPLRVL-SFDTLVDNI  271 (355)
T ss_dssp             CCEEEEEECT--TCCEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCE------EEEEEE-ECSSEEEEE
T ss_pred             CccEEEEEEC--CeEEEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcE------ecCEEE-eCCCCCceE
Confidence            1244555554  33332233345678999999998887765 5678999999743211      111122 224556778


Q ss_pred             EecC--CCEEEEeCCC-CcEEEEeCC--CCcEEEEEec---cCCCeeEEEEEecCcee
Q 014475          276 AYST--GDLLISGSED-GMVRVWDPI--THNIVRMFRL---AKGPVNNILVVRRPLYL  325 (424)
Q Consensus       276 ~~~~--~~~l~t~~~d-g~i~iwd~~--~~~~~~~~~~---~~~~v~~l~~s~~~~~l  325 (424)
                      ++.+  |++.+++..+ +.|..|+..  .+..+..++.   -...+..+ |..||+.|
T Consensus       272 ~vD~e~G~lwva~~~~g~~v~~~~P~~~~~s~v~rI~~~~~~~~~v~~v-~~ddG~~l  328 (355)
T 3sre_A          272 SVDPVTGDLWVGCHPNGMRIFFYDAENPPGSEVLRIQDILSEEPKVTVV-YAENGTVL  328 (355)
T ss_dssp             EECTTTCCEEEEEESCHHHHHSCCTTSCCCEEEEEEECTTSSSCEEEEE-EEECSSSC
T ss_pred             EEeCCCCcEEEEecCCceEEEEECCCCCCCCEEEEEEccCCCCcEEEEE-EEcCCCEE
Confidence            8876  5666655433 345555544  2555555552   12233333 44567654

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=97.61  E-value=0.028  Score=48.75  Aligned_cols=214  Identities=7%  Similarity=0.058  Sum_probs=105.3

Q ss_pred             EEEEecCCCcEEEEEccCcceee-eeccccCCeEEEEEccCCcEEEEeeC-----C------CcEEEEeCCcccchhccc
Q 014475           94 YIAGGGQSGDIYMWEVASGRLLK-KWHAHYRAVTCLVFSEDGSFLISGSE-----D------GCVRIWSLLTVFEECESQ  161 (424)
Q Consensus        94 ~l~~~~~dg~v~iwd~~~~~~~~-~~~~~~~~i~~~~~~~~~~~l~s~~~-----d------g~i~iwd~~~~~~~~~~~  161 (424)
                      +++.|+  ..+.+||+.+++-.. .+..............+++.++.|+.     .      ..+..||..+..      
T Consensus         7 l~~~GG--~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~------   78 (315)
T 4asc_A            7 IFMISE--EGAVAYDPAANECYCASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSE------   78 (315)
T ss_dssp             EEEEET--TEEEEEETTTTEEEEEECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTE------
T ss_pred             EEEEcC--CceEEECCCCCeEecCCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCe------
Confidence            445555  579999998876432 22211122233333447778888873     1      126778876521      


Q ss_pred             ccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCC--------CcEEEEecCCCceeeeee--cCcceeEEEECCCCC
Q 014475          162 RASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASED--------RTCKVWSLLKGRLLRNIV--FPSVIDAIALDPAEH  231 (424)
Q Consensus       162 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d--------~~v~iwd~~~~~~~~~~~--~~~~i~~~~~~~~~~  231 (424)
                         ...+..+...... .+++. .++  ..++.|+.+        ..+.+||+.+.+-...-.  .+..-.+++. .+++
T Consensus        79 ---W~~~~~~p~~r~~-~~~~~-~~~--~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~  150 (315)
T 4asc_A           79 ---WLGMPPLPSPRCL-FGLGE-ALN--SIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLS-HMDL  150 (315)
T ss_dssp             ---EEECCCBSSCEES-CEEEE-ETT--EEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE-ETTE
T ss_pred             ---EEECCCCCcchhc-eeEEE-ECC--EEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEE-ECCE
Confidence               1111111111001 11122 244  677777632        458899988765322212  1111122222 3566


Q ss_pred             EEEEEeC-C-----CcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecCCCEEEEeCCCC-----cEEEEeCCCC
Q 014475          232 VFYAGSR-D-----GSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTGDLLISGSEDG-----MVRVWDPITH  300 (424)
Q Consensus       232 ~l~~~~~-d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~t~~~dg-----~i~iwd~~~~  300 (424)
                      +++.|+. +     ..+.+||..+..       +..+..+........++ ...+.+++.|+.++     .+.+||+.+.
T Consensus       151 iyv~GG~~~~~~~~~~~~~yd~~~~~-------W~~~~~~p~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~yd~~~~  222 (315)
T 4asc_A          151 VYVIGGKGSDRKCLNKMCVYDPKKFE-------WKELAPMQTARSLFGAT-VHDGRIIVAAGVTDTGLTSSAEVYSITDN  222 (315)
T ss_dssp             EEEECCBCTTSCBCCCEEEEETTTTE-------EEECCCCSSCCBSCEEE-EETTEEEEEEEECSSSEEEEEEEEETTTT
T ss_pred             EEEEeCCCCCCcccceEEEEeCCCCe-------EEECCCCCCchhceEEE-EECCEEEEEeccCCCCccceEEEEECCCC
Confidence            7777765 2     468899988754       23333222211222222 22467777777554     5888998876


Q ss_pred             cEEEEEeccCCCeeEEEEEecCceeeeccCC
Q 014475          301 NIVRMFRLAKGPVNNILVVRRPLYLNLGSFS  331 (424)
Q Consensus       301 ~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~d  331 (424)
                      +-...-..........+..-+++.++.|+.+
T Consensus       223 ~W~~~~~~p~~r~~~~~~~~~~~l~v~GG~~  253 (315)
T 4asc_A          223 KWAPFEAFPQERSSLSLVSLVGTLYAIGGFA  253 (315)
T ss_dssp             EEEEECCCSSCCBSCEEEEETTEEEEEEEEE
T ss_pred             eEEECCCCCCcccceeEEEECCEEEEECCcc
Confidence            4332211111222222233466777777764

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=97.57  E-value=0.0076  Score=53.39  Aligned_cols=235  Identities=13%  Similarity=0.082  Sum_probs=115.4

Q ss_pred             cCCCccccCCCCceeEEEEECCCCceeeeec---C-CC--CeeEEEECCCCCEEEEecC-C---------CcEEEEEccC
Q 014475           48 ASSQLREQPSASSGSILYWSWSKPQVEVKSL---P-AE--PIKPIAANSHGTYIAGGGQ-S---------GDIYMWEVAS  111 (424)
Q Consensus        48 ~~~~~l~~~~~~~g~i~vwd~~~~~~~~~~~---~-~~--~v~~~~~s~~~~~l~~~~~-d---------g~v~iwd~~~  111 (424)
                      .+++.++.+|.+...+.++|.......+...   + ..  ...++.+  ++.+++.|+. +         ..+.+||+.+
T Consensus        18 ~~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~   95 (357)
T 2uvk_A           18 DNDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFI--DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKT   95 (357)
T ss_dssp             ETTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEE--TTEEEEECCEEECTTSCEEECCCEEEEETTT
T ss_pred             ECCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEEE--CCEEEEEcCCCCCCCccceeeccEEEEeCCC
Confidence            3677777777665788999987422222211   1 11  1122222  5777777776 2         4689999987


Q ss_pred             cceee--eec-cccCCeEEEEEccCCcEEEEeeCC---------------------------------------CcEEEE
Q 014475          112 GRLLK--KWH-AHYRAVTCLVFSEDGSFLISGSED---------------------------------------GCVRIW  149 (424)
Q Consensus       112 ~~~~~--~~~-~~~~~i~~~~~~~~~~~l~s~~~d---------------------------------------g~i~iw  149 (424)
                      .+-..  .+. .......++.  .+++.++.|+.+                                       ..+.+|
T Consensus        96 ~~W~~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~y  173 (357)
T 2uvk_A           96 NSWVKLMSHAPMGMAGHVTFV--HNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFLLSF  173 (357)
T ss_dssp             TEEEECSCCCSSCCSSEEEEE--ETTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGGCCCCEEEEE
T ss_pred             CcEEECCCCCCcccccceEEE--ECCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccccCCcccEEEE
Confidence            64322  222 1112222233  467788888754                                       468888


Q ss_pred             eCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeC------CCcEEEEec--CCCceee--eeecCc
Q 014475          150 SLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASE------DRTCKVWSL--LKGRLLR--NIVFPS  219 (424)
Q Consensus       150 d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~------d~~v~iwd~--~~~~~~~--~~~~~~  219 (424)
                      |+.+.         ....+..+......-.+++. .++  ..++.|+.      ...+..||+  .+.+-..  .+..+.
T Consensus       174 d~~~~---------~W~~~~~~p~~~~~~~~~~~-~~~--~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~  241 (357)
T 2uvk_A          174 DPSTQ---------QWSYAGESPWYGTAGAAVVN-KGD--KTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPD  241 (357)
T ss_dssp             ETTTT---------EEEEEEECSSCCCBSCEEEE-ETT--EEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTTT
T ss_pred             eCCCC---------cEEECCCCCCCCcccccEEE-ECC--EEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCCc
Confidence            88652         22222222211111012222 233  66666653      345777876  3333221  111111


Q ss_pred             c-eeEEEECCCCCEEEEEeCC----------------------CcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEE
Q 014475          220 V-IDAIALDPAEHVFYAGSRD----------------------GSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLA  276 (424)
Q Consensus       220 ~-i~~~~~~~~~~~l~~~~~d----------------------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  276 (424)
                      . ....+...++.+++.|+.+                      ..+.+||+.+..       +..+..+......-.++.
T Consensus       242 ~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~-------W~~~~~~p~~r~~~~~~~  314 (357)
T 2uvk_A          242 GVAGGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGK-------WDKSGELSQGRAYGVSLP  314 (357)
T ss_dssp             CCBSCEEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC----------CEEEEECSSCCBSSEEEE
T ss_pred             ccccceEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCc-------eeeCCCCCCCcccceeEE
Confidence            1 1111222356677776632                      257789988754       444444433222222332


Q ss_pred             ecCCCEEEEeCCCC------cEEEEeCCCCcEEEEE
Q 014475          277 YSTGDLLISGSEDG------MVRVWDPITHNIVRMF  306 (424)
Q Consensus       277 ~~~~~~l~t~~~dg------~i~iwd~~~~~~~~~~  306 (424)
                       ..+.+++.|+.++      .|.++++++++.+...
T Consensus       315 -~~~~i~v~GG~~~~~~~~~~v~~l~~~~~~~~~~~  349 (357)
T 2uvk_A          315 -WNNSLLIIGGETAGGKAVTDSVLITVKDNKVTVQN  349 (357)
T ss_dssp             -ETTEEEEEEEECGGGCEEEEEEEEEC-CCSCEEEC
T ss_pred             -eCCEEEEEeeeCCCCCEeeeEEEEEEcCcEeEeee
Confidence             2377888887543      3556687777665543

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=97.54  E-value=0.0086  Score=61.33  Aligned_cols=264  Identities=10%  Similarity=0.074  Sum_probs=145.8

Q ss_pred             eeEEEEECCCCceeeeecCCCCeeEEEECCCCCEEEEecCCCcEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEe
Q 014475           61 GSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISG  140 (424)
Q Consensus        61 g~i~vwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~  140 (424)
                      ..|.|-|+..+....+..-  .--+.-.+|..+.+|.-. ..++.|+|+++...+..+.- ..+|.-=.|-.+. .|+..
T Consensus        48 ~~vvIidl~~~~~~~rrpi--~AdsAIMnP~~~iiALra-g~~lQiFnl~~k~klks~~~-~e~VvfWkWis~~-~l~lV  122 (1630)
T 1xi4_A           48 AQVVIIDMNDPSNPIRRPI--SADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTM-TDDVTFWKWISLN-TVALV  122 (1630)
T ss_pred             ceEEEEECCCCCCcccccc--cchhhccCCCcceEEEec-CCeEEEeehHHhhhhccccc-CCCceEEEecCCC-eeEEE
Confidence            5788888887654422211  112344678777777754 57899999999888777664 3456666776443 34433


Q ss_pred             eCCCcEEEEeCCcccchhcccccccceEEeecCC----cCceeEEEEEEcCceeEEEEEe-------CCCcEEEEecCCC
Q 014475          141 SEDGCVRIWSLLTVFEECESQRASHLYLHSFTGH----TLRITDIVIGYGGVSATIVSAS-------EDRTCKVWSLLKG  209 (424)
Q Consensus       141 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~----~~~i~~~~~~~~~~~~~l~~~~-------~d~~v~iwd~~~~  209 (424)
                      + +..|.-|++.....          +.+.+..|    ...|..-..+++.  ++++..+       -.|.+.+|..+.+
T Consensus       123 T-~~aVyHW~~~~~s~----------P~k~fdR~~~L~~~QIinY~~d~~~--kW~~l~gi~~~~~~v~G~mQLyS~er~  189 (1630)
T 1xi4_A          123 T-DNAVYHWSMEGESQ----------PVKMFDRHSSLAGCQIINYRTDAKQ--KWLLLTGISAQQNRVVGAMQLYSVDRK  189 (1630)
T ss_pred             c-CCeEEEeccCCCCc----------cHHHHhcchhcccCeeEEeeeCCCC--CeEEEEeeccCCCcccceeeeeecccc
Confidence            3 34799999964222          22222222    3455555555555  6666433       3578889987654


Q ss_pred             ceeeeeecCcceeEEEEC--CC-CCEEEEEe---CCCcEEEEEcCCCCCCCCCcCceeeeeec---ccCcCeEEEEecC-
Q 014475          210 RLLRNIVFPSVIDAIALD--PA-EHVFYAGS---RDGSIYIAALNAESPSTSSYGMHIIGSLS---DHSKAVTCLAYST-  279 (424)
Q Consensus       210 ~~~~~~~~~~~i~~~~~~--~~-~~~l~~~~---~dg~i~i~d~~~~~~~~~~~~~~~~~~~~---~~~~~i~~~~~~~-  279 (424)
                      .....-.|-+....+...  +. ...++.+.   ..+++++.++.........+..+.+..+.   .-..-..++..++ 
T Consensus       190 ~sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k  269 (1630)
T 1xi4_A          190 VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEK  269 (1630)
T ss_pred             cchhhhHhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccc
Confidence            322111122222222111  11 12222222   13689999986541111122112111111   1234456778888 


Q ss_pred             CCEEEEeCCCCcEEEEeCCCCcEEEEEeccCCCeeEEEEEecCceeeeccCCCceeeccCCCC
Q 014475          280 GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGS  342 (424)
Q Consensus       280 ~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~d~~i~iw~~~~~  342 (424)
                      ...+..-+.-|.|.++|+.++.++..-+-...+|...+-++...-++.....|.|.--.+...
T Consensus       270 ~g~iy~itk~G~~~~~d~~t~~~i~~~ris~~~iF~~~~~~~~~g~~~vnr~G~vl~v~v~~~  332 (1630)
T 1xi4_A          270 HDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEE  332 (1630)
T ss_pred             cCEEEEEecCceEEEEecccchhhhhccccCCceEEeccCCCCCceEEEcCCceEEEEEEccc
Confidence            777888888999999999999988765544555554444443333444445555544444433

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=97.49  E-value=0.0053  Score=54.49  Aligned_cols=151  Identities=12%  Similarity=0.137  Sum_probs=93.4

Q ss_pred             cCCCccccCCCCceeEEEEECCCC-ceeeeecC----CCCeeEEEECCCCCEEEEecCCCcEEEEEccCcce--------
Q 014475           48 ASSQLREQPSASSGSILYWSWSKP-QVEVKSLP----AEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRL--------  114 (424)
Q Consensus        48 ~~~~~l~~~~~~~g~i~vwd~~~~-~~~~~~~~----~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~--------  114 (424)
                      .+|..++++-.  +.||.-++... ........    ...|..+..||+|++||..+. ..|.|-.+..+..        
T Consensus        30 ~n~t~i~~a~~--n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~-~~V~Vv~LP~~~~~~~~~~~~  106 (452)
T 3pbp_A           30 QNGTRIVFIQD--NIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFND-NEIFVMEVPWGYSNVEDVSIQ  106 (452)
T ss_dssp             TTTTEEEEEET--TEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECS-SEEEEEECCTTCSCCCCHHHH
T ss_pred             cCCCEEEEEEC--CEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecC-CeEEEEEecCccccCcccccc
Confidence            45555555543  67888787633 22222222    336888999999999999865 4789888863310        


Q ss_pred             ----eeeecc------ccCCeEEEEEcc---CCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEE
Q 014475          115 ----LKKWHA------HYRAVTCLVFSE---DGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDI  181 (424)
Q Consensus       115 ----~~~~~~------~~~~i~~~~~~~---~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  181 (424)
                          .+.++-      ...+|..+.|+|   ++..|++-..|+.|++||+......-. ...+.............|.++
T Consensus       107 ~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S~  185 (452)
T 3pbp_A          107 DAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITDL  185 (452)
T ss_dssp             HTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEEE
T ss_pred             cccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEEEE
Confidence                112221      246799999999   566899999999999999976221111 000111112223344678888


Q ss_pred             EEEEcCceeEEEE--EeCCCcEEEE
Q 014475          182 VIGYGGVSATIVS--ASEDRTCKVW  204 (424)
Q Consensus       182 ~~~~~~~~~~l~~--~~~d~~v~iw  204 (424)
                      +|..++  -.|..  .+++|.|.-.
T Consensus       186 ~Fg~~~--lTLYvl~~t~~GDIYAl  208 (452)
T 3pbp_A          186 EFSKDG--LTLYCLNTTEGGDIFAF  208 (452)
T ss_dssp             EECTTS--SCEEEEECTTSCEEEEE
T ss_pred             EEcCCC--cEEEEEecCCCCCEEEE
Confidence            888866  45555  4477776644

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=97.46  E-value=0.036  Score=48.07  Aligned_cols=216  Identities=9%  Similarity=0.100  Sum_probs=102.7

Q ss_pred             CEEEEecCCCcEEEEEccCcceee-eeccccCCeEEEEEccCCcEEEEeeC----CC-------cEEEEeCCcccchhcc
Q 014475           93 TYIAGGGQSGDIYMWEVASGRLLK-KWHAHYRAVTCLVFSEDGSFLISGSE----DG-------CVRIWSLLTVFEECES  160 (424)
Q Consensus        93 ~~l~~~~~dg~v~iwd~~~~~~~~-~~~~~~~~i~~~~~~~~~~~l~s~~~----dg-------~i~iwd~~~~~~~~~~  160 (424)
                      .+++.|+.  .+..||..+++-.. .+..............++..++.|+.    ++       .+..||..+..     
T Consensus        17 ~i~~~GG~--~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~-----   89 (318)
T 2woz_A           17 LILLVNDT--AAVAYDPMENECYLTALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSE-----   89 (318)
T ss_dssp             EEEEECSS--EEEEEETTTTEEEEEEECTTSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTE-----
T ss_pred             hhhhcccc--ceEEECCCCCceecccCCccCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCc-----
Confidence            34555553  48899998776433 11111112222333456777788773    12       16677875521     


Q ss_pred             cccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCC-------CcEEEEecCCCceeeeeecC--cceeEEEECCCCC
Q 014475          161 QRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASED-------RTCKVWSLLKGRLLRNIVFP--SVIDAIALDPAEH  231 (424)
Q Consensus       161 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d-------~~v~iwd~~~~~~~~~~~~~--~~i~~~~~~~~~~  231 (424)
                          ...+..+...... .+++. .++  ..++.|+.+       ..+.+||+.+.+-...-..+  ..-.+++. .+++
T Consensus        90 ----W~~~~~~p~~r~~-~~~~~-~~~--~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~  160 (318)
T 2woz_A           90 ----WVGLPPLPSARCL-FGLGE-VDD--KIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVIS-HNGM  160 (318)
T ss_dssp             ----EEECSCBSSCBCS-CEEEE-ETT--EEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEE-ETTE
T ss_pred             ----EEECCCCCccccc-cceEE-ECC--EEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEE-ECCE
Confidence                1111111111111 11222 244  677777754       24788888776533322211  11112222 3666


Q ss_pred             EEEEEeC------CCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecCCCEEEEeCCC-----CcEEEEeCCCC
Q 014475          232 VFYAGSR------DGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTGDLLISGSED-----GMVRVWDPITH  300 (424)
Q Consensus       232 ~l~~~~~------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~t~~~d-----g~i~iwd~~~~  300 (424)
                      +++.|+.      -..+.+||..+..       +..+..+........ ++...+.+++.|+.+     ..+.+||+.+.
T Consensus       161 iyv~GG~~~~~~~~~~~~~yd~~~~~-------W~~~~~~p~~r~~~~-~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~  232 (318)
T 2woz_A          161 IYCLGGKTDDKKCTNRVFIYNPKKGD-------WKDLAPMKTPRSMFG-VAIHKGKIVIAGGVTEDGLSASVEAFDLKTN  232 (318)
T ss_dssp             EEEECCEESSSCBCCCEEEEETTTTE-------EEEECCCSSCCBSCE-EEEETTEEEEEEEEETTEEEEEEEEEETTTC
T ss_pred             EEEEcCCCCCCCccceEEEEcCCCCE-------EEECCCCCCCcccce-EEEECCEEEEEcCcCCCCccceEEEEECCCC
Confidence            6666653      2358999988764       333332222112222 223346777777643     34778998876


Q ss_pred             cEEEEEeccCCCeeEEEEEecCceeeeccCCC
Q 014475          301 NIVRMFRLAKGPVNNILVVRRPLYLNLGSFSN  332 (424)
Q Consensus       301 ~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~d~  332 (424)
                      +-...-..........+...+++.++.|+.++
T Consensus       233 ~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~  264 (318)
T 2woz_A          233 KWEVMTEFPQERSSISLVSLAGSLYAIGGFAM  264 (318)
T ss_dssp             CEEECCCCSSCCBSCEEEEETTEEEEECCBCC
T ss_pred             eEEECCCCCCcccceEEEEECCEEEEECCeec
Confidence            42221111111112222334667777777543

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=97.42  E-value=0.011  Score=52.48  Aligned_cols=138  Identities=9%  Similarity=0.130  Sum_probs=92.1

Q ss_pred             CCcEEEEecCCCceeeeeecC----c-ceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCC----cCceeeeeecc-
Q 014475          198 DRTCKVWSLLKGRLLRNIVFP----S-VIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSS----YGMHIIGSLSD-  267 (424)
Q Consensus       198 d~~v~iwd~~~~~~~~~~~~~----~-~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~----~~~~~~~~~~~-  267 (424)
                      ++.||.-++......+.+..+    . .+..+..+|+|.+|+..+ +..|.+..+..+......    ...+ ...+.- 
T Consensus        40 ~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~~~~q-~~ty~l~  117 (452)
T 3pbp_A           40 DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFN-DNEIFVMEVPWGYSNVEDVSIQDAFQ-IFHYSID  117 (452)
T ss_dssp             TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEEC-SSEEEEEECCTTCSCCCCHHHHHTTE-EEEEEGG
T ss_pred             CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEec-CCeEEEEEecCccccCcccccccccc-eeEEEcC
Confidence            477888888755445555543    2 688899999999999886 457999999844322111    0011 111111 


Q ss_pred             -----cCcCeEEEEecC----CCEEEEeCCCCcEEEEeCCCC--cEEEEEe---------ccCCCeeEEEEEecCceeee
Q 014475          268 -----HSKAVTCLAYST----GDLLISGSEDGMVRVWDPITH--NIVRMFR---------LAKGPVNNILVVRRPLYLNL  327 (424)
Q Consensus       268 -----~~~~i~~~~~~~----~~~l~t~~~dg~i~iwd~~~~--~~~~~~~---------~~~~~v~~l~~s~~~~~l~~  327 (424)
                           ...+|..+.|+|    +..|++-..|+.|++||+...  ++. .++         .....|.+++|.+++-.|-.
T Consensus       118 ~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYv  196 (452)
T 3pbp_A          118 EEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITDLEFSKDGLTLYC  196 (452)
T ss_dssp             GCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEEEEECTTSSCEEE
T ss_pred             CcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEEEEEEcCCCcEEEE
Confidence                 357899999999    668999999999999999852  222 222         12257889999998766655


Q ss_pred             --ccCCCceeecc
Q 014475          328 --GSFSNPHTSSR  338 (424)
Q Consensus       328 --~~~d~~i~iw~  338 (424)
                        .+..|.|+-.-
T Consensus       197 l~~t~~GDIYAlc  209 (452)
T 3pbp_A          197 LNTTEGGDIFAFY  209 (452)
T ss_dssp             EECTTSCEEEEES
T ss_pred             EecCCCCCEEEEC
Confidence              55778776544

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=97.41  E-value=0.0082  Score=52.25  Aligned_cols=115  Identities=11%  Similarity=0.150  Sum_probs=71.4

Q ss_pred             eEEEeecCCCCCceEEEeCCCCceEEEeeCCCCCCCceEEec-ceeecCCCccccC-CCCceeEEEEECCCCceeeeec-
Q 014475            2 ELLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVG-QRFLASSQLREQP-SASSGSILYWSWSKPQVEVKSL-   78 (424)
Q Consensus         2 e~~lat~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~l~~~-~~~~g~i~vwd~~~~~~~~~~~-   78 (424)
                      +.+++.++ .||.|.-.|.++|+.+-+++..  ....+.... .....++..++.. ..+ |.|..++..++....... 
T Consensus        10 ~~~V~v~t-~dG~l~Ald~~tG~~~W~~~~~--~~~p~~~~~~~~~~~~~~~~vv~p~~d-G~l~a~~~~~G~~~~~~~~   85 (339)
T 2be1_A           10 SDILIAAD-VEGGLHAVDRRNGHIIWSIEPE--NFQPLIEIQEPSRLETYETLIIEPFGD-GNIYYFNAHQGLQKLPLSI   85 (339)
T ss_dssp             EEEEEEEE-TTSCEEEEETTTTEEEEEECGG--GSCCSEECCCSCTTTSSEEEEECCSTT-TEEEEEETTTEEEEEEEEH
T ss_pred             CCEEEEEe-CCCeEEEEECCCCcEEEEecCC--ccCCcEEecCCccccCCcEEEEEECCC-CEEEEEECCCCcEEeeecc
Confidence            46778888 8999999999999999888654  111122111 0011123333333 344 999999987765443322 


Q ss_pred             ----CCCCeeE---EEE-----CCCCCEEEEecCCCcEEEEEccCcceeeeecc
Q 014475           79 ----PAEPIKP---IAA-----NSHGTYIAGGGQSGDIYMWEVASGRLLKKWHA  120 (424)
Q Consensus        79 ----~~~~v~~---~~~-----s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~  120 (424)
                          ...++..   ...     +..+..+++|+.+|.+.-.|+.+|+.+..+..
T Consensus        86 ~~lv~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~  139 (339)
T 2be1_A           86 RQLVSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGP  139 (339)
T ss_dssp             HHHHTTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEEST
T ss_pred             ccceeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEec
Confidence                1222221   000     01456788999999999999999999988853

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=97.40  E-value=0.06  Score=47.49  Aligned_cols=241  Identities=12%  Similarity=0.009  Sum_probs=124.9

Q ss_pred             CCCeeEEEECCCCCEEEEecCCCcEEEEEccCcc-eeeeec---cccCCeEEEEEccC----CcEEEEeeC---C----C
Q 014475           80 AEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGR-LLKKWH---AHYRAVTCLVFSED----GSFLISGSE---D----G  144 (424)
Q Consensus        80 ~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~-~~~~~~---~~~~~i~~~~~~~~----~~~l~s~~~---d----g  144 (424)
                      -.....++|.|+|+++++ ..+|.|++++ .+++ .+..+.   ........|+++|+    +.+.++-+.   +    .
T Consensus        28 l~~P~~ia~~pdG~l~V~-e~~g~I~~~d-~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~  105 (354)
T 3a9g_A           28 LEVPWSIAPLGGGRYLVT-ERPGRLVLIS-PSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRN  105 (354)
T ss_dssp             CSCEEEEEEEETTEEEEE-ETTTEEEEEC-SSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEE
T ss_pred             CCCCeEEEEcCCCeEEEE-eCCCEEEEEe-CCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcce
Confidence            345789999999986555 5569999997 3454 222211   12356889999997    444444332   2    5


Q ss_pred             cEEEEeCCcccchhcccccccceEEeec-CCcCceeEEEEEEcCceeEEEEEeC-------------CCcEEEEecCCCc
Q 014475          145 CVRIWSLLTVFEECESQRASHLYLHSFT-GHTLRITDIVIGYGGVSATIVSASE-------------DRTCKVWSLLKGR  210 (424)
Q Consensus       145 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~l~~~~~-------------d~~v~iwd~~~~~  210 (424)
                      .|..|+.........   .....+..+. ........++|.|++  .+.++.+.             .|.|.-++....-
T Consensus       106 ~v~r~~~~~~~~~~~---~~~~l~~~~~~~~~h~~~~l~~~pDG--~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~  180 (354)
T 3a9g_A          106 RVIRGRLDGSTFKLK---EVKTLIDGIPGAYIHNGGRIRFGPDG--MLYITTGDAADPRLAQDLSSLAGKILRVDEEGRP  180 (354)
T ss_dssp             EEEEEEECSSSCCEE---EEEEEEEEEECCSSCCCCCEEECTTS--CEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCC
T ss_pred             EEEEEEECCCCcCcC---ccEEEEEcCCCCCCcCCceEEECCCC--cEEEEECCCCCCccccCCCCCCeEEEEEcCCCCC
Confidence            677777643210000   0011111122 111234678999988  56555432             2456555554210


Q ss_pred             -------eeeeee-cCcceeEEEECC-CCCEEEEEeCCC---cEEEEEcCCCCCCC---------CCcCceeeeeecccC
Q 014475          211 -------LLRNIV-FPSVIDAIALDP-AEHVFYAGSRDG---SIYIAALNAESPST---------SSYGMHIIGSLSDHS  269 (424)
Q Consensus       211 -------~~~~~~-~~~~i~~~~~~~-~~~~l~~~~~dg---~i~i~d~~~~~~~~---------~~~~~~~~~~~~~~~  269 (424)
                             ....+. .-.....++|+| ++.++++-...+   .|.+.  ..+..-.         ......++..+....
T Consensus       181 p~~npf~~~~i~a~G~rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i--~~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~  258 (354)
T 3a9g_A          181 PADNPFPNSPIWSYGHRNPQGIDWHRASGVMVATEHGPVGHDEVNII--LKGGNYGWPLATGKAGRGEFVDPVIDTGSET  258 (354)
T ss_dssp             CTTSSSTTCCEEEECCSCCCEEEECTTTCCEEEEECCSSSCCEEEEE--CTTCBCCTTTCCSCCCCTTSCCCSEECTTCC
T ss_pred             CCCCCCCCCcEEEEccCCcceEEEeCCCCCEEEEecCCCCCcEEEEe--cCCCcCCCCcccCCCCCCCCcCCEeecCCCC
Confidence                   011111 223466899999 566554432222   23332  2221000         000001222221123


Q ss_pred             cCeEEEEec-------C-CCEEEEeCCCCcEEEEeCCCC-cEE--EEEe-ccCCCeeEEEEEecCceeeecc
Q 014475          270 KAVTCLAYS-------T-GDLLISGSEDGMVRVWDPITH-NIV--RMFR-LAKGPVNNILVVRRPLYLNLGS  329 (424)
Q Consensus       270 ~~i~~~~~~-------~-~~~l~t~~~dg~i~iwd~~~~-~~~--~~~~-~~~~~v~~l~~s~~~~~l~~~~  329 (424)
                      .....++|.       . +.++++.-..+.|...++... +..  ..+. .....+..+++.|||.+.++..
T Consensus       259 ~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~pDG~lyv~~~  330 (354)
T 3a9g_A          259 WAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVIDDDGGILISTS  330 (354)
T ss_dssp             CCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEECTTSCEEEEEC
T ss_pred             cCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeeccCCCCCeeEEEECCCCcEEEEEe
Confidence            456778873       3 667777667788888888753 332  2332 2245789999999997666543

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=97.30  E-value=0.054  Score=47.83  Aligned_cols=234  Identities=9%  Similarity=-0.017  Sum_probs=108.7

Q ss_pred             EEEeecCCCCCceEEEeCCC-CceEEEeeCCCCCCCceEEecceeecCCCccccCCC-C--------ceeEEEEECCCCc
Q 014475            3 LLIASSSVADTGIGCWDLES-GAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSA-S--------SGSILYWSWSKPQ   72 (424)
Q Consensus         3 ~~lat~~~~dg~i~vwd~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~-~--------~g~i~vwd~~~~~   72 (424)
                      ++++-|. ....+.++|..+ ...-..+.......+.-.++   ...+++.++.+|. +        -..+.+||..+.+
T Consensus        22 iyv~GG~-~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~---~~~~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~   97 (357)
T 2uvk_A           22 VYIGLGS-AGTAWYKLDTQAKDKKWTALAAFPGGPRDQATS---AFIDGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNS   97 (357)
T ss_dssp             EEEECGG-GTTCEEEEETTSSSCCEEECCCCTTCCCBSCEE---EEETTEEEEECCEEECTTSCEEECCCEEEEETTTTE
T ss_pred             EEEEeCc-CCCeEEEEccccCCCCeeECCCCCCCcCccceE---EEECCEEEEEcCCCCCCCccceeeccEEEEeCCCCc
Confidence            3444444 566799999874 22223333222011111111   2236777777776 1        1468889988765


Q ss_pred             eeeeecC--CCCeeEEEECCCCCEEEEecCC---------------------------------------CcEEEEEccC
Q 014475           73 VEVKSLP--AEPIKPIAANSHGTYIAGGGQS---------------------------------------GDIYMWEVAS  111 (424)
Q Consensus        73 ~~~~~~~--~~~v~~~~~s~~~~~l~~~~~d---------------------------------------g~v~iwd~~~  111 (424)
                      -......  .......+...++++++.|+.+                                       ..+.+||+.+
T Consensus        98 W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~  177 (357)
T 2uvk_A           98 WVKLMSHAPMGMAGHVTFVHNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFLLSFDPST  177 (357)
T ss_dssp             EEECSCCCSSCCSSEEEEEETTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGGCCCCEEEEEETTT
T ss_pred             EEECCCCCCcccccceEEEECCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccccCCcccEEEEeCCC
Confidence            4332211  1111111122467888888754                                       4689999877


Q ss_pred             cceee--eeccccCCeEEEEEccCCcEEEEeeC------CCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEE
Q 014475          112 GRLLK--KWHAHYRAVTCLVFSEDGSFLISGSE------DGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVI  183 (424)
Q Consensus       112 ~~~~~--~~~~~~~~i~~~~~~~~~~~l~s~~~------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  183 (424)
                      .+-..  .+......-.++... +++.++.|+.      ...+..||+....       .....+..+..........+.
T Consensus       178 ~~W~~~~~~p~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~~d~d~~~-------~~W~~~~~~~~~~~~~~~~~~  249 (357)
T 2uvk_A          178 QQWSYAGESPWYGTAGAAVVNK-GDKTWLINGEAKPGLRTDAVFELDFTGNN-------LKWNKLAPVSSPDGVAGGFAG  249 (357)
T ss_dssp             TEEEEEEECSSCCCBSCEEEEE-TTEEEEECCEEETTEECCCEEEEECC----------CEEEECCCSSTTTCCBSCEEE
T ss_pred             CcEEECCCCCCCCcccccEEEE-CCEEEEEeeecCCCcccCceEEEEecCCC-------CcEEecCCCCCCcccccceEE
Confidence            64322  222111110223332 5677777764      2356777762110       111111111111111111223


Q ss_pred             EEcCceeEEEEEeCC----------------------CcEEEEecCCCceeee--eecCcceeEEEECCCCCEEEEEeCC
Q 014475          184 GYGGVSATIVSASED----------------------RTCKVWSLLKGRLLRN--IVFPSVIDAIALDPAEHVFYAGSRD  239 (424)
Q Consensus       184 ~~~~~~~~l~~~~~d----------------------~~v~iwd~~~~~~~~~--~~~~~~i~~~~~~~~~~~l~~~~~d  239 (424)
                      ..++  .+++.|+.+                      ..+.+||+.+.+-...  +..+..-.+ +...++++++.|+.+
T Consensus       250 ~~~~--~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~-~~~~~~~i~v~GG~~  326 (357)
T 2uvk_A          250 ISND--SLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQGRAYGV-SLPWNNSLLIIGGET  326 (357)
T ss_dssp             EETT--EEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEECSSCCBSSE-EEEETTEEEEEEEEC
T ss_pred             EECC--EEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCCCCCcccce-eEEeCCEEEEEeeeC
Confidence            3344  677777632                      2477899876543322  222111112 222367777788754


Q ss_pred             C------cEEEEEcCCCC
Q 014475          240 G------SIYIAALNAES  251 (424)
Q Consensus       240 g------~i~i~d~~~~~  251 (424)
                      +      .+.++++++++
T Consensus       327 ~~~~~~~~v~~l~~~~~~  344 (357)
T 2uvk_A          327 AGGKAVTDSVLITVKDNK  344 (357)
T ss_dssp             GGGCEEEEEEEEEC-CCS
T ss_pred             CCCCEeeeEEEEEEcCcE
Confidence            3      35666777764

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=97.30  E-value=0.062  Score=47.38  Aligned_cols=218  Identities=11%  Similarity=0.095  Sum_probs=107.8

Q ss_pred             CCCceEEEeCCCCceE--EEeeCCCCCCCceEEecceeecC---CCccccCCCCc-----eeEEEEECCCCc-----eee
Q 014475           11 ADTGIGCWDLESGAEQ--LRYKSCASPPHGLACVGQRFLAS---SQLREQPSASS-----GSILYWSWSKPQ-----VEV   75 (424)
Q Consensus        11 ~dg~i~vwd~~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~---~~~l~~~~~~~-----g~i~vwd~~~~~-----~~~   75 (424)
                      .+|.|.+++  .++..  ..+............++  ++|+   +..|.++....     +.|..++.....     ...
T Consensus        49 ~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia--~~pdf~~~g~lYv~~~~~~~~~~~~v~r~~~~~~~~~~~~~l~  124 (352)
T 2ism_A           49 RPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLA--LHPRFPQEPYVYAYRTVAEGGLRNQVVRLRHLGERGVLDRVVL  124 (352)
T ss_dssp             TTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEE--ECTTTTTSCEEEEEEEECTTSSEEEEEEEEECSSCEEEEEEEE
T ss_pred             CCCeEEEEE--CCCccEeecceEeecCCCCceeEE--ECCCCCCCCEEEEEEecCCCCCccEEEEEEeCCCCcCceEEEE
Confidence            457888887  34321  11211111234566677  9998   44444443311     577788776432     111


Q ss_pred             eecC-----CCCeeEEEECCCCCEEEEecC-------------CCcEEEEEccCc------------ceeeee-ccccCC
Q 014475           76 KSLP-----AEPIKPIAANSHGTYIAGGGQ-------------SGDIYMWEVASG------------RLLKKW-HAHYRA  124 (424)
Q Consensus        76 ~~~~-----~~~v~~~~~s~~~~~l~~~~~-------------dg~v~iwd~~~~------------~~~~~~-~~~~~~  124 (424)
                      ....     ......++|.|||.+.++.+.             .|.|.-++....            .....+ .++ ..
T Consensus       125 ~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~npf~~~~~~~~~i~a~G~-rn  203 (352)
T 2ism_A          125 DGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGNPFLGRRGARPEVYSLGH-RN  203 (352)
T ss_dssp             EEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCTTTTCTTSCTTEEEECC-SE
T ss_pred             EeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCCcccCCCCCCccEEEEcC-CC
Confidence            1111     123478999999987666432             145665665420            011111 122 23


Q ss_pred             eEEEEEcc-CCcEEEEeeCCCcE------EEEeCCcccc----hhcc---cccccceEEeecCCcCceeEEEEEEcCcee
Q 014475          125 VTCLVFSE-DGSFLISGSEDGCV------RIWSLLTVFE----ECES---QRASHLYLHSFTGHTLRITDIVIGYGGVSA  190 (424)
Q Consensus       125 i~~~~~~~-~~~~l~s~~~dg~i------~iwd~~~~~~----~~~~---~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  190 (424)
                      ...++|+| ++.++++-.....+      .+.-+..+..    ....   ......+...+. +......+++ .++  .
T Consensus       204 p~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~-~~~ap~G~~~-~~G--~  279 (352)
T 2ism_A          204 PQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPLYFWP-QGFPPGNLAF-FRG--D  279 (352)
T ss_dssp             ECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECT-TCCCEEEEEE-ETT--E
T ss_pred             cccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCCeEecC-CCCCCcceEE-ECC--E
Confidence            56789999 66655543322221      1222222110    0000   000011223332 2334567777 455  6


Q ss_pred             EEEEEeCCCcEEEEecCCCce------eee-eecCcceeEEEECCCCCEEEEEe
Q 014475          191 TIVSASEDRTCKVWSLLKGRL------LRN-IVFPSVIDAIALDPAEHVFYAGS  237 (424)
Q Consensus       191 ~l~~~~~d~~v~iwd~~~~~~------~~~-~~~~~~i~~~~~~~~~~~l~~~~  237 (424)
                      .+++.-..+.|...++.....      ... +.....+..+++.|+|.++++..
T Consensus       280 l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~~~  333 (352)
T 2ism_A          280 LYVAGLRGQALLRLVLEGERGRWRVLRVETALSGFGRLREVQVGPDGALYVTTS  333 (352)
T ss_dssp             EEEEETTTTEEEEEEEEEETTEEEEEEEEEEEESSCCEEEEEECTTSCEEEEEC
T ss_pred             EEEEECCCCEEEEEEECCCCcceeecchheecccCCCeeEEEECCCCcEEEEEe
Confidence            666666677788887764431      111 22335788999999987666654

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=97.30  E-value=0.022  Score=58.48  Aligned_cols=190  Identities=10%  Similarity=0.110  Sum_probs=115.3

Q ss_pred             eecCCCccccCCCCceeEEEEECCCCceeeeecCCCCeeEEEECCCCCEEEEecCCCcEEEEEccCc-ceeeeeccc---
Q 014475           46 FLASSQLREQPSASSGSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASG-RLLKKWHAH---  121 (424)
Q Consensus        46 ~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~-~~~~~~~~~---  121 (424)
                      .+|..+.+|.-+.  .++.|+|+++..........++|.-=.|-.+.. |+..+ +..|+.|++... .+.+.+..|   
T Consensus        73 MnP~~~iiALrag--~~lQiFnl~~k~klks~~~~e~VvfWkWis~~~-l~lVT-~~aVyHW~~~~~s~P~k~fdR~~~L  148 (1630)
T 1xi4_A           73 MNPASKVIALKAG--KTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNT-VALVT-DNAVYHWSMEGESQPVKMFDRHSSL  148 (1630)
T ss_pred             cCCCcceEEEecC--CeEEEeehHHhhhhcccccCCCceEEEecCCCe-eEEEc-CCeEEEeccCCCCccHHHHhcchhc
Confidence            5677777666653  799999999877665555567777767764443 44443 347999999643 344444444   


Q ss_pred             -cCCeEEEEEccCCcEEEEee-------CCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCce-eEE
Q 014475          122 -YRAVTCLVFSEDGSFLISGS-------EDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVS-ATI  192 (424)
Q Consensus       122 -~~~i~~~~~~~~~~~l~s~~-------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~l  192 (424)
                       ...|..-..+++.++++..|       -.|.+.+|+.+...            .+.+.+|...-..+........ ..+
T Consensus       149 ~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~------------sQ~iegha~~F~~~~~~~~~~~~~l~  216 (1630)
T 1xi4_A          149 AGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV------------SQPIEGHAASFAQFKMEGNAEESTLF  216 (1630)
T ss_pred             ccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeeccccc------------chhhhHhHhhhheeccCCCCCCceEE
Confidence             34566667788888876443       35789999986522            2233444443333322211110 222


Q ss_pred             EEEeC---CCcEEEEecCCC---ce-e----eeee-----cCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCC
Q 014475          193 VSASE---DRTCKVWSLLKG---RL-L----RNIV-----FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAES  251 (424)
Q Consensus       193 ~~~~~---d~~v~iwd~~~~---~~-~----~~~~-----~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  251 (424)
                      +.+..   .+.++|-++...   .+ .    ..+.     ..+-..++..++....++.-+.-|.+++||+.++.
T Consensus       217 ~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~  291 (1630)
T 1xi4_A          217 CFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGT  291 (1630)
T ss_pred             EEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecCceEEEEecccch
Confidence            22221   368888887543   11 1    0011     12334577788888889999999999999999974

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=97.26  E-value=0.085  Score=46.11  Aligned_cols=248  Identities=11%  Similarity=0.000  Sum_probs=132.2

Q ss_pred             CCCeeEEEECCCCCEEEEecCCCcEEEEEccCccee--eee----ccccCCeEEEEEccC----CcEEEEee--CCCcEE
Q 014475           80 AEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLL--KKW----HAHYRAVTCLVFSED----GSFLISGS--EDGCVR  147 (424)
Q Consensus        80 ~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~--~~~----~~~~~~i~~~~~~~~----~~~l~s~~--~dg~i~  147 (424)
                      -.....|+|.|+|.++++--..|.|++++..+++..  ..+    .........|+++|+    +.+.++-+  .++.|.
T Consensus        31 L~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~  110 (347)
T 3das_A           31 LNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRIV  110 (347)
T ss_dssp             CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEEE
T ss_pred             CCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEEE
Confidence            456789999999998877655899999986655432  112    123456899999985    44444322  344566


Q ss_pred             EEeCCcccchhcccccccceEEeec-CCcCceeEEEEEEcCceeEEEEEeC-------------CCcEEEEecCCCc---
Q 014475          148 IWSLLTVFEECESQRASHLYLHSFT-GHTLRITDIVIGYGGVSATIVSASE-------------DRTCKVWSLLKGR---  210 (424)
Q Consensus       148 iwd~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~l~~~~~-------------d~~v~iwd~~~~~---  210 (424)
                      -|.+................+..+. .....-..|.|.+++  .+.++.+.             .|.|.-.+....-   
T Consensus       111 R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG--~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip~~  188 (347)
T 3das_A          111 RMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDK--MLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPAPG  188 (347)
T ss_dssp             EEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTS--CEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBCTT
T ss_pred             EEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCC--CEEEEECCCCCCccccCCCCCCCEEEEEeCCCCccCC
Confidence            6655431100000001111111221 122234678999988  66666442             3455555544220   


Q ss_pred             ----eeeeee-cCcceeEEEECCCCCEEEEEe-CCCcEEEEEcCCCCCCCC---------CcCceeeeeecccCcCeEEE
Q 014475          211 ----LLRNIV-FPSVIDAIALDPAEHVFYAGS-RDGSIYIAALNAESPSTS---------SYGMHIIGSLSDHSKAVTCL  275 (424)
Q Consensus       211 ----~~~~~~-~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~---------~~~~~~~~~~~~~~~~i~~~  275 (424)
                          ....+. .-.....++|+|++.++++=. .++.=.|.-+..+..-.-         .....++..+..+......+
T Consensus       189 nPf~~~~i~a~G~RNp~Gla~dp~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~~~~~ap~G~  268 (347)
T 3das_A          189 NPFPGSPVYSYGHRNVQGLAWDDKQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWSTDEASPSGI  268 (347)
T ss_dssp             CSSTTCCEEEBCCSBCCEEEECTTCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEECTTTCCEEEE
T ss_pred             CCCCCCeEEeeCCCCcceEEECCCCCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEecCCCCCCCcce
Confidence                011122 223467899999877655432 233233333333221000         00011223333233466778


Q ss_pred             EecCCCEEEEeCCCCcEEEEeCCCCcE----EEEEeccCCCeeEEEEEecCceeeecc
Q 014475          276 AYSTGDLLISGSEDGMVRVWDPITHNI----VRMFRLAKGPVNNILVVRRPLYLNLGS  329 (424)
Q Consensus       276 ~~~~~~~l~t~~~dg~i~iwd~~~~~~----~~~~~~~~~~v~~l~~s~~~~~l~~~~  329 (424)
                      +|..+.+++..-..+.|....+.....    ...+.+..+.+..+...|||.++++..
T Consensus       269 ~~~~g~~~~~~l~~~~l~~v~~~~~~~~~~~e~~l~~~~gR~~dv~~~pDG~lyv~td  326 (347)
T 3das_A          269 AYAEGSVWMAGLRGERLWRIPLKGTAAAADPQAFLEGEYGRLRTVAPAGGDKLWLVTS  326 (347)
T ss_dssp             EEETTEEEEEESTTCSEEEEEEETTEESSCCEEESTTTSSCEEEEEEEETTEEEEEEC
T ss_pred             EEEcCceeeccccCCEEEEEEecCCceecceEEeecCCCCCccEEEECCCCcEEEEEc
Confidence            887777777766666776666654432    222333446899999999998766543

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=97.20  E-value=0.2  Score=49.34  Aligned_cols=295  Identities=11%  Similarity=0.072  Sum_probs=153.7

Q ss_pred             ceEEEeCCCCceEEEeeC--CCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCceeeeecC------CCCeeE
Q 014475           14 GIGCWDLESGAEQLRYKS--CASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSLP------AEPIKP   85 (424)
Q Consensus        14 ~i~vwd~~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~~~~------~~~v~~   85 (424)
                      .+..+|..+++.. .+..  ...+...|.++.  ...++.+.+.. .  +-+..++..+.+.......      ...|.+
T Consensus       122 Gl~~~~~~~~~~~-~~~~~~~~l~~~~i~~i~--~d~~g~lWigt-~--~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~  195 (758)
T 3ott_A          122 GLYTYQLQSRKLT-SFDTRRNGLPNNTIYSII--RTKDNQIYVGT-Y--NGLCRYIPSNGKFEGIPLPVHSSQSNLFVNS  195 (758)
T ss_dssp             EEEEEETTTCCEE-EECHHHHCCSCSCEEEEE--ECTTCCEEEEE-T--TEEEEEETTTTEEEEECCCCCTTCSSCCEEE
T ss_pred             cceeEeCCCCeEE-EeccCCCCcCCCeEEEEE--EcCCCCEEEEe-C--CCHhhCccCCCceEEecCCCccccccceeEE
Confidence            4677787665433 2310  111234466655  55666665533 3  3467788766554322111      234888


Q ss_pred             EEECCCCCEEEEecCCCcEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhccccccc
Q 014475           86 IAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASH  165 (424)
Q Consensus        86 ~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~  165 (424)
                      +...+++..|..|+. +-+..+|..+++...........|.++...+++.+.+ |+.+ -+.+++..+..         .
T Consensus       196 i~~d~~~~~lWigt~-~Gl~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi-gT~~-Gl~~~~~~~~~---------~  263 (758)
T 3ott_A          196 LLEDTTRQCVWIGTE-GYLFQYFPSTGQIKQTEAFHNNSIKSLALDGNGDLLA-GTDN-GLYVYHNDTTP---------L  263 (758)
T ss_dssp             EEEETTTTEEEEEEE-EEEEEEETTTTEEEEEEEEEEEEEEEEEECTTCCEEE-EETT-EEEEECCTTSC---------C
T ss_pred             EEEECCCCEEEEEEC-CCCeEEcCCCCeEEeccCCCCCeEEEEEEcCCCCEEE-EeCC-ceeEEecCCCc---------E
Confidence            888777765555554 4588889876654322112234588888887776544 4444 47888875421         1


Q ss_pred             ceEEee-----cCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeee--------cCcceeEEEECCCCCE
Q 014475          166 LYLHSF-----TGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV--------FPSVIDAIALDPAEHV  232 (424)
Q Consensus       166 ~~~~~~-----~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~--------~~~~i~~~~~~~~~~~  232 (424)
                      ......     .-....|.++....++   .|..|+..| +.++... . ....+.        ....|.++.-.++|.+
T Consensus       264 ~~~~~~~~~~~~l~~~~i~~i~~D~~g---~lWiGT~~G-l~~~~~~-~-~~~~~~~~~~~~~~~~~~v~~i~~D~~g~l  337 (758)
T 3ott_A          264 QHIIHDSRNIQSLTNNIIWNIFADQEH---NIWLGTDYG-ISLSRYN-S-ALQFIPISQITGTGDGNQFYSLFRDSKGFY  337 (758)
T ss_dssp             EEECCCTTCTTSCSCSCEEEEEECTTC---CEEEEESSS-EEEECCC-C--CEEEEHHHHSCSCCCCBEEEEEECTTCCE
T ss_pred             EEEEcCCCCcCcCCcCeEEEEEEcCCC---CEEEEeCCc-ccccccC-C-ceeEEecccCCCCCCCceEEEEEEcCCCCE
Confidence            000000     0123457776655443   456666666 5444322 1 111111        1246888888877765


Q ss_pred             EEEEeCCCcEEEEEcCCCCCCCCCcCceeeee----ecccCcCeEEEEecCCCEEEEeCCCCcEEEEeCCCCcEEEEEe-
Q 014475          233 FYAGSRDGSIYIAALNAESPSTSSYGMHIIGS----LSDHSKAVTCLAYSTGDLLISGSEDGMVRVWDPITHNIVRMFR-  307 (424)
Q Consensus       233 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~----~~~~~~~i~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~-  307 (424)
                      . +|+.+| +..++..++....    ......    ..-....|.++.-.+...|..|+. +-|..||..+++...-.. 
T Consensus       338 W-iGt~~G-l~~~~~~~~~~~~----~~~~~~~~~~~~l~~~~v~~i~~d~~g~lWigt~-~GL~~~~~~~~~~~~~~~~  410 (758)
T 3ott_A          338 W-FGGANG-LIRFTDPAGERHD----AIWYRMGDKTYPLSHNRIRHIYEDKEQQLWIATD-GSINRYDYATRQFIHYNIV  410 (758)
T ss_dssp             E-EEETTE-EEEESCTTSSCCC----CEEECTTCSSSCCSCSCEEEEEECTTSCEEEEET-TEEEEEETTTTEEEEEEEE
T ss_pred             E-EeeCCc-ceeecccccccce----eEEeccCCcCCCCCCCceEEEEECCCCCEEEEeC-CcHhhcCcCCCcEEEeecC
Confidence            4 455554 6666654421100    000000    001224588888777333444553 468999988775433211 


Q ss_pred             c-----cCCCeeEEEEEecCceeeeccCCCceeeccCC
Q 014475          308 L-----AKGPVNNILVVRRPLYLNLGSFSNPHTSSRRH  340 (424)
Q Consensus       308 ~-----~~~~v~~l~~s~~~~~l~~~~~d~~i~iw~~~  340 (424)
                      .     ....|.++...+++.+.+ |+..+-+..++..
T Consensus       411 ~~~~~~~~~~v~~i~~d~~g~lWi-gT~~~Gl~~~~~~  447 (758)
T 3ott_A          411 DNTGTYNTNWTYYIFEDTAGQLWI-STCLGGIFVVDKH  447 (758)
T ss_dssp             CCC--CBSSSEEEEEECTTSEEEE-EESSSCEEEEEHH
T ss_pred             CCcCCCCCceEEEEEEcCCCCEEE-EECCCceEEEccc
Confidence            1     123577777777765444 5555556666543

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=97.20  E-value=0.018  Score=50.15  Aligned_cols=196  Identities=12%  Similarity=0.082  Sum_probs=104.5

Q ss_pred             CEEEEecCCCcEEEEEccCcceeeeeccc-cCCeEEEEEc--c-CCcEEEEe-eCCCcEEEEeCCcccchhcccccccce
Q 014475           93 TYIAGGGQSGDIYMWEVASGRLLKKWHAH-YRAVTCLVFS--E-DGSFLISG-SEDGCVRIWSLLTVFEECESQRASHLY  167 (424)
Q Consensus        93 ~~l~~~~~dg~v~iwd~~~~~~~~~~~~~-~~~i~~~~~~--~-~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~~~~~  167 (424)
                      ..+++++.||.|.-.|.++|+.+.+++.. ..++....-.  + ++..++.. +.||.|..++..++.........    
T Consensus        11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~----   86 (339)
T 2be1_A           11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIR----   86 (339)
T ss_dssp             EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHH----
T ss_pred             CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeeccc----
Confidence            46888899999999999999998887654 1233221110  1 23344443 58999999998765321110000    


Q ss_pred             EEeecCCcCceeE---EEE-E----EcCceeEEEEEeCCCcEEEEecCCCceeeeeecCccee--------EEEEC----
Q 014475          168 LHSFTGHTLRITD---IVI-G----YGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVID--------AIALD----  227 (424)
Q Consensus       168 ~~~~~~~~~~i~~---~~~-~----~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~i~--------~~~~~----  227 (424)
                        .+. ...++..   ..+ .    ..+  ..+++|+.+|.+.-.|+++|+.+..+....+..        |....    
T Consensus        87 --~lv-~~SP~~~~~~pvv~~~~~~~~~--g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~  161 (339)
T 2be1_A           87 --QLV-STSPLHLKTNIVVNDSGKIVED--EKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKL  161 (339)
T ss_dssp             --HHH-TTCSEEEECC----------CC--EEEEECEEEEEEEEEETTTCCEEEEESTTCBCC-----------------
T ss_pred             --cce-eccccccCCCceeecccccccC--CEEEEEecCCEEEEEECCCCcEEEEEecCCCccccccccccccccccccc
Confidence              000 1112211   000 0    022  788999999999999999999999887443211        11111    


Q ss_pred             -CCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCc--CeE-EEEecC-CCEEEEeCCCCcEEEEeCCCCcE
Q 014475          228 -PAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSK--AVT-CLAYST-GDLLISGSEDGMVRVWDPITHNI  302 (424)
Q Consensus       228 -~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~--~i~-~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~  302 (424)
                       ..+..++.+..+..+.+.+ +++. .   .... ......+..  ++. .-..+. +.+ +.++.||.|.-+|..+|+.
T Consensus       162 d~~~~~v~ig~~~y~v~~~~-~sG~-~---W~~~-~s~~~~~~~~~~~~~~~~~s~Dg~~-~~~~~dg~v~A~d~~~G~~  234 (339)
T 2be1_A          162 QECENMIVIGKTIFELGIHS-YDGA-S---YNVT-YSTWQQNVLDVPLALQNTFSKDGMC-IAPFRDKSLLASDLDFRIA  234 (339)
T ss_dssp             ---CCEEEEEEEEEECEECC-TTSC-C---CCCE-EEEEECCTTTHHHHTTCSSCSSSCC-EEEETTTEEEEECSTTCCE
T ss_pred             ccCCCeEEEecceEEEEEEC-CCCC-e---EEEe-cccccccccccccccccccccCCcE-EEECCCCEEEEEECCCCcE
Confidence             1245677777776666666 3321 1   1000 111111100  000 000011 334 4567788888888888887


Q ss_pred             EE
Q 014475          303 VR  304 (424)
Q Consensus       303 ~~  304 (424)
                      +.
T Consensus       235 ~W  236 (339)
T 2be1_A          235 RW  236 (339)
T ss_dssp             EE
T ss_pred             EE
Confidence            65

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=97.18  E-value=0.089  Score=46.15  Aligned_cols=197  Identities=13%  Similarity=0.071  Sum_probs=108.3

Q ss_pred             CeEEEEEccCCcEEEEe------------eCCCcEEEEeCCcccchhcccccccceEEe--ecCCcCceeEEEEEEc--C
Q 014475          124 AVTCLVFSEDGSFLISG------------SEDGCVRIWSLLTVFEECESQRASHLYLHS--FTGHTLRITDIVIGYG--G  187 (424)
Q Consensus       124 ~i~~~~~~~~~~~l~s~------------~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~~~~~~~--~  187 (424)
                      ....+...|+|..++++            ..+|.|.++|+.+.....     .......  +.........+.+.++  +
T Consensus        51 G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~-----~~l~~~g~~~~~~~f~PhGi~~~~d~dg  125 (355)
T 3sre_A           51 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAV-----SELEIIGNTLDISSFNPHGISTFIDDDN  125 (355)
T ss_dssp             CCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCE-----EECEEECSSCCGGGCCEEEEEEEECTTC
T ss_pred             CcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCce-----EEEEccCCCCCcCceeeeeeEEEECCCC
Confidence            34566677766554444            268999999986421100     0001111  1112345666777663  3


Q ss_pred             ceeEEEEEeC--CCcEEEEecCCCc-ee---eeeec--CcceeEEEECCCCCEEEEEeC-----------------CCcE
Q 014475          188 VSATIVSASE--DRTCKVWSLLKGR-LL---RNIVF--PSVIDAIALDPAEHVFYAGSR-----------------DGSI  242 (424)
Q Consensus       188 ~~~~l~~~~~--d~~v~iwd~~~~~-~~---~~~~~--~~~i~~~~~~~~~~~l~~~~~-----------------dg~i  242 (424)
                      ...++++-..  +.++.+|++.... ..   ..+.+  -...+.+.+.++|.++++...                 .|.+
T Consensus       126 ~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~v  205 (355)
T 3sre_A          126 TVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFV  205 (355)
T ss_dssp             CEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEE
T ss_pred             cEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEE
Confidence            2234444443  4678888776532 22   22222  245789999999987776541                 1334


Q ss_pred             EEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEe-CCCCcEEEEeCCC-CcE--EEEEeccCCCeeEEE
Q 014475          243 YIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISG-SEDGMVRVWDPIT-HNI--VRMFRLAKGPVNNIL  317 (424)
Q Consensus       243 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~-~~dg~i~iwd~~~-~~~--~~~~~~~~~~v~~l~  317 (424)
                      +.+|.  +.          +..+...-...+.++|+| ++.|+.+ +..+.|..|++.. ++.  .+.+. ..+..-.++
T Consensus       206 yr~d~--~~----------~~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~~-~~g~PDGi~  272 (355)
T 3sre_A          206 TYYSP--ND----------VRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLS-FDTLVDNIS  272 (355)
T ss_dssp             EEECT--TC----------CEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEE-CSSEEEEEE
T ss_pred             EEEEC--Ce----------EEEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEEe-CCCCCceEE
Confidence            44443  21          112222335578899999 6655554 5678899999863 332  23342 345667888


Q ss_pred             EEe-cCceeeeccCC-Cceeecc
Q 014475          318 VVR-RPLYLNLGSFS-NPHTSSR  338 (424)
Q Consensus       318 ~s~-~~~~l~~~~~d-~~i~iw~  338 (424)
                      +.+ +|.+.+++..+ +.|..|+
T Consensus       273 vD~e~G~lwva~~~~g~~v~~~~  295 (355)
T 3sre_A          273 VDPVTGDLWVGCHPNGMRIFFYD  295 (355)
T ss_dssp             ECTTTCCEEEEEESCHHHHHSCC
T ss_pred             EeCCCCcEEEEecCCceEEEEEC
Confidence            988 58877766544 3444444

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=97.15  E-value=0.1  Score=45.10  Aligned_cols=216  Identities=10%  Similarity=0.121  Sum_probs=106.9

Q ss_pred             eEEEEECCCCceeeeecC--CCCeeEEEECCCCCEEEEecC----CC-------cEEEEEccCcceee--eeccccCCeE
Q 014475           62 SILYWSWSKPQVEVKSLP--AEPIKPIAANSHGTYIAGGGQ----SG-------DIYMWEVASGRLLK--KWHAHYRAVT  126 (424)
Q Consensus        62 ~i~vwd~~~~~~~~~~~~--~~~v~~~~~s~~~~~l~~~~~----dg-------~v~iwd~~~~~~~~--~~~~~~~~i~  126 (424)
                      .+..||..+.+.......  ...........++.+++.|+.    ++       .+.+||..+.+-..  .+........
T Consensus        25 ~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~  104 (318)
T 2woz_A           25 AAVAYDPMENECYLTALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCLFG  104 (318)
T ss_dssp             EEEEEETTTTEEEEEEECTTSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCSCE
T ss_pred             ceEEECCCCCceecccCCccCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccccccc
Confidence            478889887764432211  122223334457788888873    12       17788887664322  2222122222


Q ss_pred             EEEEccCCcEEEEeeCC-------CcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeC--
Q 014475          127 CLVFSEDGSFLISGSED-------GCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASE--  197 (424)
Q Consensus       127 ~~~~~~~~~~l~s~~~d-------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~--  197 (424)
                      .+.+  +++.++.|+.+       ..+.+||+.+.         ....+..+...... .++ ...++  ..++.|+.  
T Consensus       105 ~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~---------~W~~~~~~p~~r~~-~~~-~~~~~--~iyv~GG~~~  169 (318)
T 2woz_A          105 LGEV--DDKIYVVAGKDLQTEASLDSVLCYDPVAA---------KWSEVKNLPIKVYG-HNV-ISHNG--MIYCLGGKTD  169 (318)
T ss_dssp             EEEE--TTEEEEEEEEBTTTCCEEEEEEEEETTTT---------EEEEECCCSSCEES-CEE-EEETT--EEEEECCEES
T ss_pred             eEEE--CCEEEEEcCccCCCCcccceEEEEeCCCC---------CEeECCCCCCcccc-cEE-EEECC--EEEEEcCCCC
Confidence            2223  57777777754       24778888652         11111111111001 111 22344  66677664  


Q ss_pred             ----CCcEEEEecCCCceeeeee--cCcceeEEEECCCCCEEEEEeCC-----CcEEEEEcCCCCCCCCCcCceeeeeec
Q 014475          198 ----DRTCKVWSLLKGRLLRNIV--FPSVIDAIALDPAEHVFYAGSRD-----GSIYIAALNAESPSTSSYGMHIIGSLS  266 (424)
Q Consensus       198 ----d~~v~iwd~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~  266 (424)
                          -..+.+||+.+.+-...-.  .+..-.+++. -++++++.|+.+     ..+.+||+.+..       +..+..+.
T Consensus       170 ~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~-------W~~~~~~p  241 (318)
T 2woz_A          170 DKKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAI-HKGKIVIAGGVTEDGLSASVEAFDLKTNK-------WEVMTEFP  241 (318)
T ss_dssp             SSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEEEEEETTEEEEEEEEEETTTCC-------EEECCCCS
T ss_pred             CCCccceEEEEcCCCCEEEECCCCCCCcccceEEE-ECCEEEEEcCcCCCCccceEEEEECCCCe-------EEECCCCC
Confidence                2358999988765332222  1111122222 256777777643     357788887754       33333332


Q ss_pred             ccCcCeEEEEecCCCEEEEeCCC--------------CcEEEEeCCCCc
Q 014475          267 DHSKAVTCLAYSTGDLLISGSED--------------GMVRVWDPITHN  301 (424)
Q Consensus       267 ~~~~~i~~~~~~~~~~l~t~~~d--------------g~i~iwd~~~~~  301 (424)
                      ....... +....+.+++.|+.+              ..+.+||+.+.+
T Consensus       242 ~~r~~~~-~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~  289 (318)
T 2woz_A          242 QERSSIS-LVSLAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKE  289 (318)
T ss_dssp             SCCBSCE-EEEETTEEEEECCBCCBC----CCBCCBCCCEEEEETTTTE
T ss_pred             CcccceE-EEEECCEEEEECCeeccCCCCceeccceeeeEEEEeCCCCE
Confidence            2222222 222236777777754              347778877654

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=96.83  E-value=0.23  Score=43.78  Aligned_cols=232  Identities=12%  Similarity=0.042  Sum_probs=117.3

Q ss_pred             ceEEecceeecCCCccccCCCCceeEEEEECCCCceeeee-----cCCCCeeEEEECCC---CCEEEEecC----C----
Q 014475           38 GLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKS-----LPAEPIKPIAANSH---GTYIAGGGQ----S----  101 (424)
Q Consensus        38 ~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~~-----~~~~~v~~~~~s~~---~~~l~~~~~----d----  101 (424)
                      .-..++  |.|+|+++++ ... |.|.+++.+ ++.....     ........|+++|+   +..|.++..    +    
T Consensus        30 ~P~~ia--~~pdG~l~V~-e~~-g~I~~~d~~-G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~  104 (354)
T 3a9g_A           30 VPWSIA--PLGGGRYLVT-ERP-GRLVLISPS-GKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIR  104 (354)
T ss_dssp             CEEEEE--EEETTEEEEE-ETT-TEEEEECSS-CEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEE
T ss_pred             CCeEEE--EcCCCeEEEE-eCC-CEEEEEeCC-CceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcc
Confidence            345666  9999985554 444 899998743 3322211     12356899999997   444544332    2    


Q ss_pred             CcEEEEEccCc-------cee-eeecc-ccCCeEEEEEccCCcEEEEeeC-------------CCcEEEEeCCcccchhc
Q 014475          102 GDIYMWEVASG-------RLL-KKWHA-HYRAVTCLVFSEDGSFLISGSE-------------DGCVRIWSLLTVFEECE  159 (424)
Q Consensus       102 g~v~iwd~~~~-------~~~-~~~~~-~~~~i~~~~~~~~~~~l~s~~~-------------dg~i~iwd~~~~~~~~~  159 (424)
                      ..|..|+....       +.+ ..+.. .......+.|.|+|.++++.+.             .|.|.-++.........
T Consensus       105 ~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~n  184 (354)
T 3a9g_A          105 NRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADN  184 (354)
T ss_dssp             EEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTS
T ss_pred             eEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCC
Confidence            56777776543       111 11221 1123467999999987776543             24555555432100000


Q ss_pred             ccccccceEEeecCCcCceeEEEEEE-cCceeEEEEEeCCC---cEEEEecCCCc------------------eeeee-e
Q 014475          160 SQRASHLYLHSFTGHTLRITDIVIGY-GGVSATIVSASEDR---TCKVWSLLKGR------------------LLRNI-V  216 (424)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~l~~~~~d~---~v~iwd~~~~~------------------~~~~~-~  216 (424)
                      ..  ....+. ..++. ....++|++ .+  .++++-...+   .|.+..  .+.                  ++..+ .
T Consensus       185 pf--~~~~i~-a~G~r-np~Gla~d~~~g--~l~v~d~g~~~~dei~~i~--~G~nyGwp~~~g~~~~~~~~~p~~~~~~  256 (354)
T 3a9g_A          185 PF--PNSPIW-SYGHR-NPQGIDWHRASG--VMVATEHGPVGHDEVNIIL--KGGNYGWPLATGKAGRGEFVDPVIDTGS  256 (354)
T ss_dssp             SS--TTCCEE-EECCS-CCCEEEECTTTC--CEEEEECCSSSCCEEEEEC--TTCBCCTTTCCSCCCCTTSCCCSEECTT
T ss_pred             CC--CCCcEE-EEccC-CcceEEEeCCCC--CEEEEecCCCCCcEEEEec--CCCcCCCCcccCCCCCCCCcCCEeecCC
Confidence            00  000111 12232 345788888 44  3333322211   133322  111                  12222 1


Q ss_pred             cCcceeEEEEC-------CCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeC
Q 014475          217 FPSVIDAIALD-------PAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGS  287 (424)
Q Consensus       217 ~~~~i~~~~~~-------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~  287 (424)
                      .......+++.       .++.++++....+.|...++......     ......+.+....+..+++.| +.++++..
T Consensus       257 ~~~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~-----~~~~~~~~~~~~rp~~v~~~pDG~lyv~~~  330 (354)
T 3a9g_A          257 ETWAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEV-----RKISTFFKNVFGRLRDVVIDDDGGILISTS  330 (354)
T ss_dssp             CCCCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCE-----EEEEEECTTTSCCEEEEEECTTSCEEEEEC
T ss_pred             CCcCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcc-----cceeeeccCCCCCeeEEEECCCCcEEEEEe
Confidence            23356777774       45666666666778888888753210     001111222245688888888 76666553

>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B

Probab=96.68  E-value=0.24  Score=41.97  Aligned_cols=225  Identities=15%  Similarity=0.037  Sum_probs=121.5

Q ss_pred             CCCeeEEEECCCCCEEEEecCCCcEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhc
Q 014475           80 AEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECE  159 (424)
Q Consensus        80 ~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~  159 (424)
                      ...|..++...... ++. . ||.|+.|-....-.+..-......|..++...+- .++. . ||.|..|-.....+...
T Consensus        23 ~~~i~~ia~G~~h~-~~l-~-~G~v~~wG~n~~Gqlg~p~~~~~~i~~ia~G~~h-s~~l-~-~G~v~~wG~n~~Gqlg~   96 (282)
T 3qhy_B           23 QSGVDAIAGGYFHG-LAL-K-GGKVLGWGANLNGQLTMPAATQSGVDAIAAGNYH-SLAL-K-DGEVIAWGGNEDGQTTV   96 (282)
T ss_dssp             SSSCCEEEECSSEE-EEE-E-TTEEEEEECCSSSTTSCCGGGGSCCCEEEECSSE-EEEE-E-TTEEEEEECCTTSTTCC
T ss_pred             cCCCcEEEeCCCeE-EEE-E-CCEEEEEeCCCCCCCCCCccCCCCEEEEEeCCCE-EEEE-E-CCEEEEeeCCCCCCCCC
Confidence            34677777764433 333 4 8999999865433222212233467777775432 2333 4 89999998654221100


Q ss_pred             ccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCC-CceeeeeecCcceeEEEECCCCCEEEEEeC
Q 014475          160 SQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLK-GRLLRNIVFPSVIDAIALDPAEHVFYAGSR  238 (424)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~  238 (424)
                           +.      .-...|..++....    +.+.-. +|.|..|-... +++-........|..++.-.....+  -. 
T Consensus        97 -----P~------~~~~~v~~ia~G~~----hs~al~-~G~v~~wG~n~~gqlg~~~~~~~~i~~i~~G~~~~~~--l~-  157 (282)
T 3qhy_B           97 -----PA------EARSGVDAIAAGAW----ASYALK-DGKVIAWGDDSDGQTTVPAEAQSGVTALDGGVYTALA--VK-  157 (282)
T ss_dssp             -----CG------GGSSSEEEEEEETT----EEEEEE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSSEEEE--EE-
T ss_pred             -----Cc------ccCCCeEEEECcCC----EEEEEe-CCeEEEecCCCCCcCCCCccCCCCeEEEEcccCEEEE--EE-
Confidence                 00      01235666665443    333344 89999997654 2222111233456666654433222  23 


Q ss_pred             CCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecCCCEEEEeCCCCcEEEEeCCCCcEEEEEeccCCCeeEEEE
Q 014475          239 DGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTGDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILV  318 (424)
Q Consensus       239 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~  318 (424)
                      ||.++.|-.........+         ..-...|..++......++.  .||.|..|-......+..-......|..++.
T Consensus       158 ~G~v~~wG~n~~gqlg~p---------~~~~~~v~~i~~G~~hs~al--~~G~v~~wG~n~~gqlg~p~~~~~~v~~i~~  226 (282)
T 3qhy_B          158 NGGVIAWGDNYFGQTTVP---------AEAQSGVDDVAGGIFHSLAL--KDGKVIAWGDNRYKQTTVPTEALSGVSAIAS  226 (282)
T ss_dssp             TTEEEEEECCTTSTTSCC---------GGGGSSEEEEEECSSEEEEE--ETTEEEEEECCTTSTTCCCGGGGSSCCEEEE
T ss_pred             CCEEEEecCCCCCCCCCc---------eecCCCeEEEEecCCEEEEE--ECCeEEEEECCCCCCCCCCcccCCCceEEEc
Confidence            799999987664322111         11135677777665444444  5999999976543222111112245677766


Q ss_pred             EecCceeeeccCCCceeeccCCCCC
Q 014475          319 VRRPLYLNLGSFSNPHTSSRRHGSQ  343 (424)
Q Consensus       319 s~~~~~l~~~~~d~~i~iw~~~~~~  343 (424)
                      ..+....++   ||.+..|-.....
T Consensus       227 G~~h~~al~---~g~v~~wG~n~~g  248 (282)
T 3qhy_B          227 GEWYSLALK---NGKVIAWGSSRTA  248 (282)
T ss_dssp             CSSCEEEEE---TTEEEEESTTCCC
T ss_pred             CCCEEEEEE---CCEEEEecCCCCc
Confidence            554333333   8999999776543

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=96.68  E-value=0.26  Score=47.91  Aligned_cols=217  Identities=9%  Similarity=0.020  Sum_probs=106.8

Q ss_pred             CceEEEeCCCCceEEEe-e---CCCCCCCceEEecceeec-CCCccccCCCCc-----eeEEEEECCCCceeeeecCCC-
Q 014475           13 TGIGCWDLESGAEQLRY-K---SCASPPHGLACVGQRFLA-SSQLREQPSASS-----GSILYWSWSKPQVEVKSLPAE-   81 (424)
Q Consensus        13 g~i~vwd~~~~~~~~~~-~---~~~~~~~~v~~~~~~~~~-~~~~l~~~~~~~-----g~i~vwd~~~~~~~~~~~~~~-   81 (424)
                      ..+.++|..+++-...- .   +.......-.++.  ..+ +++.++.||.+.     ..+.+||..+.+......... 
T Consensus       412 ~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~--~~~~~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~p~~  489 (695)
T 2zwa_A          412 NEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFT--TISRNNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSHT  489 (695)
T ss_dssp             CCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEE--EETTTTEEEEECCBSSTTCBCCCCEEEETTTTEEEECCCCSBC
T ss_pred             CcEEEEECCCCeEEEeccCCCCCCCCccccceEEE--EEccCCEEEEEcCCCCCCCccccEEEEeCCCCcEEECCCCCCC
Confidence            45888998877644322 1   0011112122222  333 777888877542     357888887765432221111 


Q ss_pred             -CeeEEEECCCCCEEEEecCCC--cEEEEEccCcceeee-----eccccCCeEEEEEccC-CcEEEEeeC--C-----Cc
Q 014475           82 -PIKPIAANSHGTYIAGGGQSG--DIYMWEVASGRLLKK-----WHAHYRAVTCLVFSED-GSFLISGSE--D-----GC  145 (424)
Q Consensus        82 -~v~~~~~s~~~~~l~~~~~dg--~v~iwd~~~~~~~~~-----~~~~~~~i~~~~~~~~-~~~l~s~~~--d-----g~  145 (424)
                       .-.+++.-.++.+++.|+.++  .+.+||+.+..-...     +........++.+..+ ++.++.|+.  +     ..
T Consensus       490 R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~  569 (695)
T 2zwa_A          490 RFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDK  569 (695)
T ss_dssp             CBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCE
T ss_pred             cccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCc
Confidence             112233324788888887655  699999987643221     1112222233555554 677777776  2     35


Q ss_pred             EEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeC--------CCcEEEEecCCCceeeeeec
Q 014475          146 VRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASE--------DRTCKVWSLLKGRLLRNIVF  217 (424)
Q Consensus       146 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~--------d~~v~iwd~~~~~~~~~~~~  217 (424)
                      +.+||+.+..-  . .......+.........-.+++...++  ..++.|+.        ...+.+||+.+.+-. ....
T Consensus       570 v~~yd~~~~~w--~-~~~~W~~~~~~p~~~R~~~~~~~~~~~--~iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~-~~~~  643 (695)
T 2zwa_A          570 AIIFKYDAENA--T-EPITVIKKLQHPLFQRYGSQIKYITPR--KLLIVGGTSPSGLFDRTNSIISLDPLSETLT-SIPI  643 (695)
T ss_dssp             EEEEEECTTCS--S-CCEEEEEEEECGGGCCBSCEEEEEETT--EEEEECCBCSSCCCCTTTSEEEEETTTTEEE-ECCC
T ss_pred             EEEEEccCCcc--c-cceEEEEcCCCCCCCcccceEEEeCCC--EEEEECCccCCCCCCCCCeEEEEECCCCeEE-Eeec
Confidence            88889866320  0 000011111110011111122333324  77777774        346899999877544 2222


Q ss_pred             Ccce----------eEEEECCCCCEEEEEe
Q 014475          218 PSVI----------DAIALDPAEHVFYAGS  237 (424)
Q Consensus       218 ~~~i----------~~~~~~~~~~~l~~~~  237 (424)
                      +...          .+.+..+++++++.|+
T Consensus       644 p~~~~~~~~p~~~gh~~~~~~~g~i~v~GG  673 (695)
T 2zwa_A          644 SRRIWEDHSLMLAGFSLVSTSMGTIHIIGG  673 (695)
T ss_dssp             CHHHHHHSCCCCSSCEEECC---CEEEECC
T ss_pred             cccccCCCCccceeeeEEEeCCCEEEEEeC
Confidence            2211          3344445556777665

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=96.64  E-value=0.2  Score=48.76  Aligned_cols=200  Identities=14%  Similarity=0.149  Sum_probs=102.7

Q ss_pred             CCCCEEEEecCC----CcEEEEEccCcceeeee--------ccccCCeEEEEEccCCcEEEEeeCCC------cEEEEeC
Q 014475           90 SHGTYIAGGGQS----GDIYMWEVASGRLLKKW--------HAHYRAVTCLVFSEDGSFLISGSEDG------CVRIWSL  151 (424)
Q Consensus        90 ~~~~~l~~~~~d----g~v~iwd~~~~~~~~~~--------~~~~~~i~~~~~~~~~~~l~s~~~dg------~i~iwd~  151 (424)
                      .++.+++.|+.+    ..+.+||+.+++-...-        ......-..+.+..+++.++.|+.++      .+.+||+
T Consensus       396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~  475 (695)
T 2zwa_A          396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDM  475 (695)
T ss_dssp             CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEET
T ss_pred             ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeC
Confidence            467777777753    46889998877533221        11112223333322677888887543      4778888


Q ss_pred             CcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCC--cEEEEecCCCceeeeee-----cC-cceeE
Q 014475          152 LTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDR--TCKVWSLLKGRLLRNIV-----FP-SVIDA  223 (424)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~--~v~iwd~~~~~~~~~~~-----~~-~~i~~  223 (424)
                      .+.         ....+..+...... .+++...++  ..++.|+.++  .+.+||+.+.+-...-.     .+ ....+
T Consensus       476 ~t~---------~W~~~~~~p~~R~~-h~~~~~~~~--~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a  543 (695)
T 2zwa_A          476 KTR---------EWSMIKSLSHTRFR-HSACSLPDG--NVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAG  543 (695)
T ss_dssp             TTT---------EEEECCCCSBCCBS-CEEEECTTS--CEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCE
T ss_pred             CCC---------cEEECCCCCCCccc-ceEEEEcCC--EEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeE
Confidence            652         11111111111111 111221244  6777777654  68999988765332221     11 12233


Q ss_pred             EEECCC-CCEEEEEeC--C-----CcEEEEEcCCCCCCCCCcCceeeeeec-ccCcCeEEEEecCCCEEEEeCC------
Q 014475          224 IALDPA-EHVFYAGSR--D-----GSIYIAALNAESPSTSSYGMHIIGSLS-DHSKAVTCLAYSTGDLLISGSE------  288 (424)
Q Consensus       224 ~~~~~~-~~~l~~~~~--d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~l~t~~~------  288 (424)
                      +.+..+ +.+++.|+.  +     ..+.+||+.+..- .....+..+.... .......++.+..+.+++.|+.      
T Consensus       544 ~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w-~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG~~~~~~~  622 (695)
T 2zwa_A          544 LEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENA-TEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLF  622 (695)
T ss_dssp             EEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCS-SCCEEEEEEEECGGGCCBSCEEEEEETTEEEEECCBCSSCCC
T ss_pred             EEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCcc-ccceEEEEcCCCCCCCcccceEEEeCCCEEEEECCccCCCCC
Confidence            555554 667777765  2     3588999887642 1111122222211 1111223333332677777874      


Q ss_pred             --CCcEEEEeCCCCcE
Q 014475          289 --DGMVRVWDPITHNI  302 (424)
Q Consensus       289 --dg~i~iwd~~~~~~  302 (424)
                        ...+.+||+.+.+-
T Consensus       623 ~~~~~v~~yd~~t~~W  638 (695)
T 2zwa_A          623 DRTNSIISLDPLSETL  638 (695)
T ss_dssp             CTTTSEEEEETTTTEE
T ss_pred             CCCCeEEEEECCCCeE
Confidence              34589999987653

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=96.58  E-value=0.65  Score=45.66  Aligned_cols=290  Identities=13%  Similarity=0.171  Sum_probs=153.7

Q ss_pred             ceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCceeee-----ecCCCCeeEEEE
Q 014475           14 GIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVK-----SLPAEPIKPIAA   88 (424)
Q Consensus        14 ~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~-----~~~~~~v~~~~~   88 (424)
                      -+..+|..+++...   ........|.++.  . .++.+. ++..  +.+..++..+.+....     ......|.++..
T Consensus        83 Gl~~yd~~~~~f~~---~~~~~~~~i~~i~--~-~~g~lW-igt~--~Gl~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~  153 (758)
T 3ott_A           83 GILVYNYRADRYEQ---PETDFPTDVRTMA--L-QGDTLW-LGAL--NGLYTYQLQSRKLTSFDTRRNGLPNNTIYSIIR  153 (758)
T ss_dssp             EEEEEETTTTEECC---CSCCCCSCEEEEE--E-ETTEEE-EEET--TEEEEEETTTCCEEEECHHHHCCSCSCEEEEEE
T ss_pred             CeEEEeCCCCEEEC---cccCCCceEEEEE--e-cCCcEE-EEcC--CcceeEeCCCCeEEEeccCCCCcCCCeEEEEEE
Confidence            37788877654321   1111223455543  3 355443 3433  3577888776654322     123457889888


Q ss_pred             CCCCCEEEEecCCCcEEEEEccCcceeee-ecc----ccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhccccc
Q 014475           89 NSHGTYIAGGGQSGDIYMWEVASGRLLKK-WHA----HYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRA  163 (424)
Q Consensus        89 s~~~~~l~~~~~dg~v~iwd~~~~~~~~~-~~~----~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~  163 (424)
                      .+++.+.+. +.+| |..++..+++.... ...    ....|.++...+++..|..|+. +-+..+|..+..        
T Consensus       154 d~~g~lWig-t~~G-l~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~~--------  222 (758)
T 3ott_A          154 TKDNQIYVG-TYNG-LCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-GYLFQYFPSTGQ--------  222 (758)
T ss_dssp             CTTCCEEEE-ETTE-EEEEETTTTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-EEEEEEETTTTE--------
T ss_pred             cCCCCEEEE-eCCC-HhhCccCCCceEEecCCCccccccceeEEEEEECCCCEEEEEEC-CCCeEEcCCCCe--------
Confidence            888876654 4444 77888766543221 111    1234888888777665555554 458888875421        


Q ss_pred             ccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeee--------cCcceeEEEECCCCCEEEE
Q 014475          164 SHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV--------FPSVIDAIALDPAEHVFYA  235 (424)
Q Consensus       164 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~--------~~~~i~~~~~~~~~~~l~~  235 (424)
                       ......+  ....|.++....++   .|..|+.+ -+.+++..+++......        ....|.++....+|. |.+
T Consensus       223 -~~~~~~l--~~~~i~~i~~d~~g---~lWigT~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~-lWi  294 (758)
T 3ott_A          223 -IKQTEAF--HNNSIKSLALDGNG---DLLAGTDN-GLYVYHNDTTPLQHIIHDSRNIQSLTNNIIWNIFADQEHN-IWL  294 (758)
T ss_dssp             -EEEEEEE--EEEEEEEEEECTTC---CEEEEETT-EEEEECCTTSCCEEECCCTTCTTSCSCSCEEEEEECTTCC-EEE
T ss_pred             -EEeccCC--CCCeEEEEEEcCCC---CEEEEeCC-ceeEEecCCCcEEEEEcCCCCcCcCCcCeEEEEEEcCCCC-EEE
Confidence             1111111  12346666655443   45556644 58888877654322211        123588888887776 555


Q ss_pred             EeCCCcEEEEEcCCCCCCCCCcCceeeee--e--cccCcCeEEEEecCCCEEEEeCCCCcEEEEeCCCCc--EEEEEec-
Q 014475          236 GSRDGSIYIAALNAESPSTSSYGMHIIGS--L--SDHSKAVTCLAYSTGDLLISGSEDGMVRVWDPITHN--IVRMFRL-  308 (424)
Q Consensus       236 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~--~--~~~~~~i~~~~~~~~~~l~t~~~dg~i~iwd~~~~~--~~~~~~~-  308 (424)
                      |+..| +.++.....        ......  .  ......|.++.-.....|..|+.+| +..++..+++  ....+.. 
T Consensus       295 GT~~G-l~~~~~~~~--------~~~~~~~~~~~~~~~~~v~~i~~D~~g~lWiGt~~G-l~~~~~~~~~~~~~~~~~~~  364 (758)
T 3ott_A          295 GTDYG-ISLSRYNSA--------LQFIPISQITGTGDGNQFYSLFRDSKGFYWFGGANG-LIRFTDPAGERHDAIWYRMG  364 (758)
T ss_dssp             EESSS-EEEECCCC---------CEEEEHHHHSCSCCCCBEEEEEECTTCCEEEEETTE-EEEESCTTSSCCCCEEECTT
T ss_pred             EeCCc-ccccccCCc--------eeEEecccCCCCCCCceEEEEEEcCCCCEEEeeCCc-ceeecccccccceeEEeccC
Confidence            66666 554432211        011110  0  0123468888777733444445555 6667665432  1222221 


Q ss_pred             ------cCCCeeEEEEEecCceeeeccCCCceeeccCCCCC
Q 014475          309 ------AKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGSQ  343 (424)
Q Consensus       309 ------~~~~v~~l~~s~~~~~l~~~~~d~~i~iw~~~~~~  343 (424)
                            ....|.++.-.++|...+ |+ ++-+..++..+.+
T Consensus       365 ~~~~~l~~~~v~~i~~d~~g~lWi-gt-~~GL~~~~~~~~~  403 (758)
T 3ott_A          365 DKTYPLSHNRIRHIYEDKEQQLWI-AT-DGSINRYDYATRQ  403 (758)
T ss_dssp             CSSSCCSCSCEEEEEECTTSCEEE-EE-TTEEEEEETTTTE
T ss_pred             CcCCCCCCCceEEEEECCCCCEEE-Ee-CCcHhhcCcCCCc
Confidence                  123578887777776544 34 3467778776543

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=96.25  E-value=0.72  Score=42.62  Aligned_cols=296  Identities=11%  Similarity=0.078  Sum_probs=158.4

Q ss_pred             EEEeecCCCCCceEEEeCCCCceEEEeeCCCC---------------------------CCCceEEecceeecCCCcccc
Q 014475            3 LLIASSSVADTGIGCWDLESGAEQLRYKSCAS---------------------------PPHGLACVGQRFLASSQLREQ   55 (424)
Q Consensus         3 ~~lat~~~~dg~i~vwd~~~~~~~~~~~~~~~---------------------------~~~~v~~~~~~~~~~~~~l~~   55 (424)
                      ..+.||+ ..|.|+|+-+.+++.++.+.-...                           |...+..-.  =..||+++..
T Consensus        71 y~f~SgG-~sG~v~v~G~PSmR~l~~IpVF~~~~~~G~G~t~esk~il~~~~~~~~gD~HHp~~S~td--g~yDGrylfi  147 (638)
T 3sbq_A           71 YGFWSGG-HQGEVRVLGVPSMRELMRIPVFNVDSATGWGLTNESRHIMGDSAKFLNGDCHHPHISMTD--GKYDGKYLFI  147 (638)
T ss_dssp             EEEEECG-GGCCEEEEEETTTEEEEEECSSSCCTTTCTTTBHHHHHHHGGGGGCCCCCCCCCEEEEET--TEEEEEEEEE
T ss_pred             EEEeecC-cCceEEEEecCCcceEEEeecccCCCCcccCCchhHHHHHhcCCCccCCCcCCCcccccC--CeeeeEEEEE
Confidence            3567888 999999999999999988754321                           111111111  1135666666


Q ss_pred             CCCCceeEEEEECCCCcee--eeecCCCCeeEEEEC--CCCCEEEEecCC-------CcEEEEEccCcceeeeec---cc
Q 014475           56 PSASSGSILYWSWSKPQVE--VKSLPAEPIKPIAAN--SHGTYIAGGGQS-------GDIYMWEVASGRLLKKWH---AH  121 (424)
Q Consensus        56 ~~~~~g~i~vwd~~~~~~~--~~~~~~~~v~~~~~s--~~~~~l~~~~~d-------g~v~iwd~~~~~~~~~~~---~~  121 (424)
                      -......|-.-+++..+..  +.......+..++|-  |+-.|++++++.       |..  ..++..+....+.   +.
T Consensus       148 Ndkan~RvAri~l~~~~~d~Ii~iPn~~~~Hg~~~~~~p~T~yv~~~~e~~~P~pndg~~--~~~~~~~~y~~f~~iD~~  225 (638)
T 3sbq_A          148 NDKANSRVARIRLDIMKCDKMITVPNVQAIHGLRLQKVPHTKYVFANAEFIIPHPNDGKV--FDLQDENSYTMYNAIDAE  225 (638)
T ss_dssp             EETTTTEEEEEETTTTEEEEEEECTTCSCEEEEEECCSSBCCEEEEEECSCEESSCSSSC--CCTTSTTEEEEEEEEETT
T ss_pred             ecCCCcceEEEECCcEeeceeEeCCCCcCcccccccccCCccEEEecceeeccCCCCCcc--cccCChhhceEEEEEcCC
Confidence            6555566777777765543  233456788899986  788888887653       221  0001111001111   10


Q ss_pred             c----------CCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEE------
Q 014475          122 Y----------RAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGY------  185 (424)
Q Consensus       122 ~----------~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~------  185 (424)
                      .          +....+...+++++.++.+.+       .+.+........            ...=..+.|+.      
T Consensus       226 tm~v~~Qv~v~gnld~~~~~~~g~~af~t~yN-------sE~~~~l~em~~------------~e~D~~~vfn~~~ie~~  286 (638)
T 3sbq_A          226 TMEMAFQVIVDGNLDNTDADYTGRFAAATCYN-------SEKAFDLGGMMR------------NERDWVVVFDIHAVEAA  286 (638)
T ss_dssp             TCSEEEEEEESSCCCCEEECSSSSEEEEEESC-------TTCCSSHHHHTC------------SSCEEEEEEEHHHHHHH
T ss_pred             ccEEEEEEEcCCChhhcCCCCCCCEEEEeeec-------cccCcChhhcCc------------ccccEEEEecHHHHHHH
Confidence            0          011112222333333333221       111100000000            01111122221      


Q ss_pred             --cCceeEEEEEeCCC-cEEEEecCC----C-ceeeeeecCcceeEEEECCCCCEEEEEe-CCCcEEEEEcCCCCCC---
Q 014475          186 --GGVSATIVSASEDR-TCKVWSLLK----G-RLLRNIVFPSVIDAIALDPAEHVFYAGS-RDGSIYIAALNAESPS---  253 (424)
Q Consensus       186 --~~~~~~l~~~~~d~-~v~iwd~~~----~-~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~---  253 (424)
                        ++  ++-   -.+| .+.+.|.+.    + .....+..+.....+.++|+|+++++++ -+.++.++|++.....   
T Consensus       287 vk~G--~~~---~~~g~gv~ViD~~~~~~~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~  361 (638)
T 3sbq_A          287 VKAG--DFI---TLGDSKTPVLDGRKKDGKDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAG  361 (638)
T ss_dssp             HHTT--CCB---CCTTCCCCEEECSCBTTBCCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTT
T ss_pred             HhcC--CeE---EECCCCeeEEccccccccCCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhc
Confidence              22  111   0121 478888876    2 3445556778888999999999988876 4678999999852110   


Q ss_pred             -CCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCCC----------cEEEEEeccCCCeeEEEE---
Q 014475          254 -TSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITH----------NIVRMFRLAKGPVNNILV---  318 (424)
Q Consensus       254 -~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~----------~~~~~~~~~~~~v~~l~~---  318 (424)
                       ............. -.-.....+|.+ |....|---|..|.-|++...          ..+..+..|-.+ -.+.-   
T Consensus       362 k~~~~~~~~~ae~e-~GlGPlHt~Fd~~G~aYTtlfidSqvvkWni~~a~~~~~g~~~~~v~~k~dv~Yqp-GH~~~~~g  439 (638)
T 3sbq_A          362 KLADPRDVIVGEPE-LGLGPLHTTFDGRGNAYTTLFIDSQVVKWNMEEAVRAYKGEKVNYIKQKLDVHYQP-GHLHASLC  439 (638)
T ss_dssp             CCSCGGGGEEECCB-CCSCEEEEEECSSSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCE-EEEEETTT
T ss_pred             cccCcccceEeecc-CCCcccEEEECCCCceEeeeeecceEEEEeccHHHHHhcCccCCeeeeccccccCC-cccccCCC
Confidence             0000011122222 234567788988 866667778999999998754          456667665433 33333   


Q ss_pred             ---EecCceeeecc
Q 014475          319 ---VRRPLYLNLGS  329 (424)
Q Consensus       319 ---s~~~~~l~~~~  329 (424)
                         .|+|++|++..
T Consensus       440 et~~~dGk~lv~ln  453 (638)
T 3sbq_A          440 ETNEADGKWLVALS  453 (638)
T ss_dssp             TSTTCCSCEEEEEE
T ss_pred             ccCCCCccEEEEec
Confidence               47888888754

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=96.05  E-value=0.7  Score=40.61  Aligned_cols=101  Identities=12%  Similarity=0.093  Sum_probs=55.2

Q ss_pred             eEEecceeecCCCccccCCCCceeEEEEECCCCcee-ee------ecCCCCeeEEEECCC---CCEEEEe-cC-------
Q 014475           39 LACVGQRFLASSQLREQPSASSGSILYWSWSKPQVE-VK------SLPAEPIKPIAANSH---GTYIAGG-GQ-------  100 (424)
Q Consensus        39 v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~-~~------~~~~~~v~~~~~s~~---~~~l~~~-~~-------  100 (424)
                      -..++  |.|+|+.+.++... |.|++++.+..... ..      .........++++|+   +..|.+. ..       
T Consensus        20 P~~i~--~~pdG~~l~V~e~~-G~i~~~~~~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~   96 (353)
T 2g8s_A           20 PWALA--FLPDNHGMLITLRG-GELRHWQAGKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKA   96 (353)
T ss_dssp             EEEEE--ECSTTCCEEEEETT-TEEEEEETTTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCE
T ss_pred             cEEEE--EcCCCCEEEEEeCC-ceEEEEeCCCceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCc
Confidence            45566  99999934444455 89999985432111 11      112346789999996   4444443 22       


Q ss_pred             CCcEEEEEccCc--c--eee----eec---cccCCeEEEEEccCCcEEEEeeC
Q 014475          101 SGDIYMWEVASG--R--LLK----KWH---AHYRAVTCLVFSEDGSFLISGSE  142 (424)
Q Consensus       101 dg~v~iwd~~~~--~--~~~----~~~---~~~~~i~~~~~~~~~~~l~s~~~  142 (424)
                      ...|..|++..+  .  ...    .+.   ........+.|.|+|.++++.+.
T Consensus        97 ~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd  149 (353)
T 2g8s_A           97 GTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGE  149 (353)
T ss_dssp             EEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECC
T ss_pred             eeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECC
Confidence            224666666432  1  111    111   11112357999999976666543

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=95.79  E-value=0.15  Score=41.01  Aligned_cols=144  Identities=8%  Similarity=-0.021  Sum_probs=78.6

Q ss_pred             ceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeeecCcc--------eeEEEECCCCCEEEEEeCCCcEEEEEcC
Q 014475          177 RITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSV--------IDAIALDPAEHVFYAGSRDGSIYIAALN  248 (424)
Q Consensus       177 ~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~--------i~~~~~~~~~~~l~~~~~dg~i~i~d~~  248 (424)
                      .+.+++|+|++  .+.++  .+|.+.-.+..+.....-+.....        ..++.|.|+|.+.++  .||.|+-++-.
T Consensus        42 ~~~~laf~P~G--~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~pP  115 (236)
T 1tl2_A           42 NFKFLFLSPGG--ELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASPP  115 (236)
T ss_dssp             TCSEEEECTTS--CEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECTTSCEEEE--ETTEEEEESCC
T ss_pred             cceeEEECCCc--cEEEE--eCCeEEEECCCCCCcccccccccEecccccccceEEEECCCCCEEEe--CCCEEEEeCCC
Confidence            67799999976  54444  677777666544222111111122        478999999998887  56988877653


Q ss_pred             CCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCCCc------EEEEEe-ccCCCeeEEEEEe
Q 014475          249 AESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHN------IVRMFR-LAKGPVNNILVVR  320 (424)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~------~~~~~~-~~~~~v~~l~~s~  320 (424)
                      +.....  ....-...-..--..+..+.+.| +.+.+..  |+.++-+...++.      ....+- ..-..-+.+.|.+
T Consensus       116 ~~~~~~--Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~  191 (236)
T 1tl2_A          116 QSDTDN--WIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSS  191 (236)
T ss_dssp             CSTTCC--HHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECT
T ss_pred             cCCCCc--eeccccEeccCCCCceEEEEECCCceEEEEe--CCcEEecCCCCCCCcccccccceeccCCcceEEEEEECC
Confidence            322110  00000001111225678999999 6655555  7776544433221      111111 1222345567888


Q ss_pred             cCceeeeccCCC
Q 014475          321 RPLYLNLGSFSN  332 (424)
Q Consensus       321 ~~~~l~~~~~d~  332 (424)
                      ++...++.  ++
T Consensus       192 ~G~l~~v~--~g  201 (236)
T 1tl2_A          192 VGTLFGVQ--GG  201 (236)
T ss_dssp             TSCEEEEE--TT
T ss_pred             CCcEEEEe--CC
Confidence            88776665  56

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=95.74  E-value=0.041  Score=44.18  Aligned_cols=133  Identities=8%  Similarity=-0.040  Sum_probs=79.0

Q ss_pred             eEEEeecCCCCCceEEEeCCCCc------eEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCceee
Q 014475            2 ELLIASSSVADTGIGCWDLESGA------EQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEV   75 (424)
Q Consensus         2 e~~lat~~~~dg~i~vwd~~~~~------~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~   75 (424)
                      |.+|++.. .| +++.=...++.      ...++-..  .-..+..++  |+|+|.+.++  .+ |.+.-.+..+.....
T Consensus         4 ~~~l~~v~-~d-~~y~G~~P~~~~~~~~~~a~~iG~~--gw~~~~~la--f~P~G~LYaV--~~-G~Ly~~~~~t~~~~~   74 (236)
T 1tl2_A            4 ESMLRGVY-QD-KFYQGTYPQNKNDNWLARATLIGKG--GWSNFKFLF--LSPGGELYGV--LN-DKIYKGTPPTHDNDN   74 (236)
T ss_dssp             CCCEEEEE-TT-EEEEESCCCSTTCCHHHHSEEEESS--SCTTCSEEE--ECTTSCEEEE--ET-TEEEEESCCCSTTCC
T ss_pred             ceEEEEEe-CC-cEEecCCCCCcccchhhhccccCcc--ccccceeEE--ECCCccEEEE--eC-CeEEEECCCCCCccc
Confidence            44566666 66 66666665555      12222221  123567888  9999997777  44 776666653321110


Q ss_pred             eecCCCC--------eeEEEECCCCCEEEEecCCCcEEEEEccCcceee-------eeccccCCeEEEEEccCCcEEEEe
Q 014475           76 KSLPAEP--------IKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLK-------KWHAHYRAVTCLVFSEDGSFLISG  140 (424)
Q Consensus        76 ~~~~~~~--------v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~-------~~~~~~~~i~~~~~~~~~~~l~s~  140 (424)
                      -......        ..++.|.|+|.+.++  .||.|+-++..+.....       .-+.--..+..|.|.|+|.+.++.
T Consensus        75 W~~s~t~IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~  152 (236)
T 1tl2_A           75 WMGRAKKIGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH  152 (236)
T ss_dssp             HHHHCEEEECSCGGGCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE
T ss_pred             ccccccEecccccccceEEEECCCCCEEEe--CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe
Confidence            0011222        488999999998888  56988877763321111       111112567999999999877776


Q ss_pred             eCCCcEE
Q 014475          141 SEDGCVR  147 (424)
Q Consensus       141 ~~dg~i~  147 (424)
                        |+.++
T Consensus       153 --dg~ly  157 (236)
T 1tl2_A          153 --GQQFY  157 (236)
T ss_dssp             --TTEEE
T ss_pred             --CCcEE
Confidence              77754

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=95.68  E-value=0.61  Score=42.60  Aligned_cols=109  Identities=8%  Similarity=0.003  Sum_probs=60.1

Q ss_pred             cCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeee---------cCcceeEEEECCC---CCEEEEEeC----
Q 014475          175 TLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV---------FPSVIDAIALDPA---EHVFYAGSR----  238 (424)
Q Consensus       175 ~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~---------~~~~i~~~~~~~~---~~~l~~~~~----  238 (424)
                      -...+.|+|.|++  .++++-...+.|++++..+++......         .......++++|+   +..|++...    
T Consensus        26 l~~P~~~a~~pdG--~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~  103 (454)
T 1cru_A           26 LNKPHALLWGPDN--QIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNP  103 (454)
T ss_dssp             CSSEEEEEECTTS--CEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECT
T ss_pred             CCCceEEEEcCCC--cEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEecccc
Confidence            3455789999987  655554433478888865554322221         1345668999995   555655542    


Q ss_pred             ---------CCcEEEEEcCCCCCCCCCcCceeee-eec-ccCcCeEEEEecC-CCEEEEeC
Q 014475          239 ---------DGSIYIAALNAESPSTSSYGMHIIG-SLS-DHSKAVTCLAYST-GDLLISGS  287 (424)
Q Consensus       239 ---------dg~i~i~d~~~~~~~~~~~~~~~~~-~~~-~~~~~i~~~~~~~-~~~l~t~~  287 (424)
                               ...|.-++.........  ..+.+. .+. ........|+|.| +.++++.+
T Consensus       104 ~~~~~~~~~~~~v~r~~~~~~~~~~~--~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~G  162 (454)
T 1cru_A          104 KSTDKELPNQTIIRRYTYNKSTDTLE--KPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIG  162 (454)
T ss_dssp             TC--CCSCEEEEEEEEEEETTTTEEE--EEEEEEEEECCCSSCCEEEEEECTTSCEEEEEC
T ss_pred             CCCccccccccEEEEEEECCCCCCcC--CcEEEEEcCCCCCCCCCCeEeECCCCeEEEEEC
Confidence                     23566666543211000  011111 122 1223468899999 77777654

>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1

Probab=95.38  E-value=1.2  Score=38.34  Aligned_cols=207  Identities=9%  Similarity=0.017  Sum_probs=114.0

Q ss_pred             CCCCEEEEecCCCcEEEEEccCcceee---------eeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcc
Q 014475           90 SHGTYIAGGGQSGDIYMWEVASGRLLK---------KWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECES  160 (424)
Q Consensus        90 ~~~~~l~~~~~dg~v~iwd~~~~~~~~---------~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~  160 (424)
                      |+..++++.+.+|.|+--.+...+...         .++. .+.+..+........++..+..|.++-+...........
T Consensus         6 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lke-~D~l~~~~~~~~~~~ll~~T~~G~~~~~~~~~ip~~~r~   84 (312)
T 1suu_A            6 QKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLND-GDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSRA   84 (312)
T ss_dssp             --CEEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCCT-TCCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCC----
T ss_pred             CCCCEEEEEeCCCEEEEeEHHHhhccccCCCCceecccCC-CCEEEEEEEECCCCEEEEEECCCeEEEEEHHHCCCCCcc
Confidence            466778888999999988765432211         1222 234555555555667788888999877766432111000


Q ss_pred             ccccc-ceEEeecCCcCceeEEEEEEc-CceeEEEEEeCCCcEEEEecCCC-------ceeeeeecCcceeEEEECCCCC
Q 014475          161 QRASH-LYLHSFTGHTLRITDIVIGYG-GVSATIVSASEDRTCKVWSLLKG-------RLLRNIVFPSVIDAIALDPAEH  231 (424)
Q Consensus       161 ~~~~~-~~~~~~~~~~~~i~~~~~~~~-~~~~~l~~~~~d~~v~iwd~~~~-------~~~~~~~~~~~i~~~~~~~~~~  231 (424)
                      ..... .....+.. ...|..+...++ .....++..+..|.++...+..-       .....+...+.+-.+.....+.
T Consensus        85 ~~G~~i~~~l~l~~-~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L~~~d~lv~~~~~~~~~  163 (312)
T 1suu_A           85 SKGQNISELINLGD-QEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLNDKDFVTSAEIVFKDE  163 (312)
T ss_dssp             ---CBGGGTSCCCT-TCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----CEECBCCCTTCCEEEEEEECTTC
T ss_pred             CCCcChhhccCCCC-CCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCcEEEEecCCCCEEEEEEEeCCCC
Confidence            00000 00111222 234444433321 11267888899999998877432       2222233345555555545566


Q ss_pred             EEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCC
Q 014475          232 VFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPIT  299 (424)
Q Consensus       232 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~  299 (424)
                      .++..+.+|.+..+....-..............+.. ...|.++..-+ +..+++.+..|..+..++..
T Consensus       164 ~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~~-~d~vv~~~~v~~~~~l~~vt~~G~~kr~~~~e  231 (312)
T 1suu_A          164 KVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLKE-GDLFVKVLSVKENPYLLIVSENGYGKRLNMSK  231 (312)
T ss_dssp             EEEEEETTSEEEEEEGGGSCBCCTTBCCEECCCCCT-TCCEEEEEECTTCSEEEEEETTSEEEEEEGGG
T ss_pred             EEEEEeCCCcEEEEEHHHccccCCCCCCeEeEEeCC-CCEEEEEEEECCCCeEEEEECCCceEEEEHHH
Confidence            788899999999998876332222111122223332 34555555444 67788888899998888753

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=95.10  E-value=0.18  Score=46.50  Aligned_cols=123  Identities=15%  Similarity=0.132  Sum_probs=78.8

Q ss_pred             ceEEEeCCC----CceEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCc------e-------eee
Q 014475           14 GIGCWDLES----GAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQ------V-------EVK   76 (424)
Q Consensus        14 ~i~vwd~~~----~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~------~-------~~~   76 (424)
                      .|.|-|.+.    +..+..+-.....+.++.     .+|||+++++++.-+.++.++|+++..      +       ...
T Consensus       299 gv~ViD~~~~~~~~~~~~~~iP~pksPHGv~-----vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae  373 (638)
T 3sbq_A          299 KTPVLDGRKKDGKDSKFTRYVPVPKNPHGCN-----TSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGE  373 (638)
T ss_dssp             CCCEEECSCBTTBCCSSEEEEEESSSCCCEE-----ECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEEC
T ss_pred             CeeEEccccccccCCceEEEEeCCCCCccee-----eCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEee
Confidence            467777765    332322222223344554     899999999999888999999987421      1       111


Q ss_pred             ecCCCCeeEEEECCCCCEEEEecCCCcEEEEEccCc----------ceeeeeccccCCeEEEEE------ccCCcEEEEe
Q 014475           77 SLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASG----------RLLKKWHAHYRAVTCLVF------SEDGSFLISG  140 (424)
Q Consensus        77 ~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~----------~~~~~~~~~~~~i~~~~~------~~~~~~l~s~  140 (424)
                      ....-.....+|.++|....+---|.+|.-|++...          ..+..+..|-.+ -.+.-      .|+|++|++.
T Consensus       374 ~e~GlGPlHt~Fd~~G~aYTtlfidSqvvkWni~~a~~~~~g~~~~~v~~k~dv~Yqp-GH~~~~~get~~~dGk~lv~l  452 (638)
T 3sbq_A          374 PELGLGPLHTTFDGRGNAYTTLFIDSQVVKWNMEEAVRAYKGEKVNYIKQKLDVHYQP-GHLHASLCETNEADGKWLVAL  452 (638)
T ss_dssp             CBCCSCEEEEEECSSSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCE-EEEEETTTTSTTCCSCEEEEE
T ss_pred             ccCCCcccEEEECCCCceEeeeeecceEEEEeccHHHHHhcCccCCeeeeccccccCC-cccccCCCccCCCCccEEEEe
Confidence            223556788999999966666668999999999753          234444444332 22332      4688888887


Q ss_pred             eC
Q 014475          141 SE  142 (424)
Q Consensus       141 ~~  142 (424)
                      ..
T Consensus       453 nK  454 (638)
T 3sbq_A          453 SK  454 (638)
T ss_dssp             ES
T ss_pred             cc
Confidence            54

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=95.06  E-value=2  Score=39.21  Aligned_cols=112  Identities=13%  Similarity=0.098  Sum_probs=60.8

Q ss_pred             CCCeeEEEECCCCCEEEEecCCCcEEEEEccCccee--eeecc------ccCCeEEEEEccC----CcEEEEeeC-----
Q 014475           80 AEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLL--KKWHA------HYRAVTCLVFSED----GSFLISGSE-----  142 (424)
Q Consensus        80 ~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~--~~~~~------~~~~i~~~~~~~~----~~~l~s~~~-----  142 (424)
                      -.....|+|.|+|+++++-...+.|++++..+++..  ..+..      .......|+|+|+    +.+.++-+.     
T Consensus        26 l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~  105 (454)
T 1cru_A           26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKS  105 (454)
T ss_dssp             CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC
T ss_pred             CCCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCC
Confidence            345689999999997777544457888876555432  22221      2456779999994    444444332     


Q ss_pred             -------CCcEEEEeCCcccchhcccccccceEEeec-CCcCceeEEEEEEcCceeEEEEEe
Q 014475          143 -------DGCVRIWSLLTVFEECESQRASHLYLHSFT-GHTLRITDIVIGYGGVSATIVSAS  196 (424)
Q Consensus       143 -------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~l~~~~  196 (424)
                             ...|.-++........  . .....+..+. ........|+|.+++  .+.++.+
T Consensus       106 ~~~~~~~~~~v~r~~~~~~~~~~--~-~~~~i~~~~p~~~~H~~~~l~f~pDG--~Lyv~~G  162 (454)
T 1cru_A          106 TDKELPNQTIIRRYTYNKSTDTL--E-KPVDLLAGLPSSKDHQSGRLVIGPDQ--KIYYTIG  162 (454)
T ss_dssp             --CCSCEEEEEEEEEEETTTTEE--E-EEEEEEEEECCCSSCCEEEEEECTTS--CEEEEEC
T ss_pred             CccccccccEEEEEEECCCCCCc--C-CcEEEEEcCCCCCCCCCCeEeECCCC--eEEEEEC
Confidence                   1345555543211000  0 0111111122 122346789999988  5555544

>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}

Probab=94.62  E-value=2  Score=37.13  Aligned_cols=166  Identities=13%  Similarity=0.084  Sum_probs=96.9

Q ss_pred             CCCCeeEEEECC---CCCEEEEecCCCcEEEEEccCcce-------eeeeccccCCeEEEEEccCCcEEEEeeCCCcEEE
Q 014475           79 PAEPIKPIAANS---HGTYIAGGGQSGDIYMWEVASGRL-------LKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRI  148 (424)
Q Consensus        79 ~~~~v~~~~~s~---~~~~l~~~~~dg~v~iwd~~~~~~-------~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~i  148 (424)
                      ..+.|.++..-+   +..+++..+.+|.++--.+.....       ...++. .+.+..+........++..+..|.+..
T Consensus        93 ~~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke-~D~lv~~~~~~~~d~ill~T~~G~~~r  171 (327)
T 3uc1_A           93 PEERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRD-NDELVGAVLCSAGDDLLLVSANGQSIR  171 (327)
T ss_dssp             TTCCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCT-TCCEEEEEEECTTCEEEEEETTSEEEE
T ss_pred             CCCEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhccccCceEEEEECC-CCEEEEEEEecCCCEEEEEECCCeEEE
Confidence            355666654433   578899999999999988755322       223333 344555555555567888889999998


Q ss_pred             EeCC--cccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCc-------eeeeee--c
Q 014475          149 WSLL--TVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGR-------LLRNIV--F  217 (424)
Q Consensus       149 wd~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~-------~~~~~~--~  217 (424)
                      +...  ........  ........+. ....|.++...+.+  ..++..+..|.++.-.+..-.       -+..+.  .
T Consensus       172 f~~~~~eip~~gr~--a~Gv~~i~L~-~~d~Vv~~~~~~~~--~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~~~~l~~  246 (327)
T 3uc1_A          172 FSATDEALRPMGRA--TSGVQGMRFN-IDDRLLSLNVVREG--TYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDR  246 (327)
T ss_dssp             EECCTTTSCCCCTT--SBCEESSCCC-TTCCEEEEEECCTT--CEEEEEETTSEEEEEEGGGSCBCCTTSCCEESSCCCT
T ss_pred             EECcccccCcCCcC--CCCeeeecCC-CCCEEEEEEEECCC--CEEEEEeCCCcEEEEEHHHccccCcCCCcEEEEEecC
Confidence            8886  32211110  1111111222 23456665554444  688899999999888764322       122222  1


Q ss_pred             -CcceeEEEECCCCCEEEEEeCCCcEEEEEcCCC
Q 014475          218 -PSVIDAIALDPAEHVFYAGSRDGSIYIAALNAE  250 (424)
Q Consensus       218 -~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  250 (424)
                       .+.+-.+....+...++..+.+|.+.-++...-
T Consensus       247 ~~d~lv~~~~~~~~~~i~l~T~~G~~ir~~~~~i  280 (327)
T 3uc1_A          247 RRGRLVGALIVDDDSELYAVTSGGGVIRTAARQV  280 (327)
T ss_dssp             TTCSEEEEEEECTTCEEEEEEGGGCEEEEEGGGS
T ss_pred             CCCeEEEEEEeCCCccEEEEcCCCeEEEEehhhc
Confidence             334444443344556777788888888877654

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=94.45  E-value=2.1  Score=36.58  Aligned_cols=234  Identities=9%  Similarity=0.030  Sum_probs=120.1

Q ss_pred             eecCCCccccCC-CCceeEEEEECCCCceeeeecCCCCeeEEEECCCCCEEEEecCC--------------CcEEEEEcc
Q 014475           46 FLASSQLREQPS-ASSGSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQS--------------GDIYMWEVA  110 (424)
Q Consensus        46 ~~~~~~~l~~~~-~~~g~i~vwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d--------------g~v~iwd~~  110 (424)
                      |+.++..+.... .+++.|...+.+.........  .  .+--+++++.+|+-....              ..|+..++.
T Consensus        21 ~~~~g~~iy~~n~~d~~~ly~~~~dg~~~~~l~~--~--~~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~d   96 (302)
T 3s25_A           21 FCESDGEVFFSNTNDNGRLYAMNIDGSNIHKLSN--D--TAMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRN   96 (302)
T ss_dssp             EEEETTEEEEEEGGGTTEEEEEETTSCSCEEEEE--E--EEEEEEECSSEEEEEEECC------CCSSCCSEEEEEEETT
T ss_pred             EEEeCCEEEEEeCCCCceEEEEcCCCCCCEEccC--C--ceeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCC
Confidence            445666655553 223677777766554332221  1  234567888888877543              357777776


Q ss_pred             CcceeeeeccccCCeEEEEEccCCcEEEEee--CCC--cEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEc
Q 014475          111 SGRLLKKWHAHYRAVTCLVFSEDGSFLISGS--EDG--CVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYG  186 (424)
Q Consensus       111 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~--~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  186 (424)
                      .++... +..  ..  +..|+++++.|+-..  .++  .|...++..         ..   ...+..+..    ..++++
T Consensus        97 g~~~~~-l~~--~~--~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dG---------s~---~~~lt~~~~----~~~~~~  155 (302)
T 3s25_A           97 GHGSTV-LDP--DP--CIYASLIGNYIYYLHYDTQTATSLYRIRIDG---------EE---KKKIKNHYL----FTCNTS  155 (302)
T ss_dssp             SCCCEE-EEC--SC--EEEEEEETTEEEEEEESSSSCEEEEEEETTS---------CC---CEEEESSCC----CCSEEE
T ss_pred             CCcceE-eec--CC--ccEEEEeCCEEEEEeecCCCCceEEEEECCC---------CC---eEEEeCCCc----eEeeEE
Confidence            554322 221  22  236777888887665  334  454455532         11   112222222    345777


Q ss_pred             CceeEEE-EEeCCCcEEEEecCCCceeeeeecCcceeEEEECCCCCEEEEEeCCC--cEEEEEcCCCCCCCCCcCceeee
Q 014475          187 GVSATIV-SASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDG--SIYIAALNAESPSTSSYGMHIIG  263 (424)
Q Consensus       187 ~~~~~l~-~~~~d~~v~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~~  263 (424)
                      +  +.|+ +......|..-++..+.....+.  +... ..+.|++.+|+-....+  .|..-+++...          ..
T Consensus       156 g--~~iy~t~~g~~~Iy~~~l~g~~~~~l~~--~~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~----------~~  220 (302)
T 3s25_A          156 D--RYFYYNNPKNGQLYRYDTASQSEALFYD--CNCY-KPVVLDDTNVYYMDVNRDNAIVHVNINNPN----------PV  220 (302)
T ss_dssp             T--TEEEEECTTTCCEEEEETTTTEEEEEEC--SCEE-EEEEEETTEEEEEEGGGTTEEEEECSSSCC----------CE
T ss_pred             C--CEEEEEeCCCceEEEEECCCCCEEEEeC--CCcc-ceeeecCCEEEEEEcCCCcEEEEEECCCCC----------eE
Confidence            7  4444 44446778888887665433332  2222 23558888887665443  56666665543          11


Q ss_pred             eecccCcCeEEEEecC-CCEEEEeC--CCCcEEEEeCCCCcEEEEEeccCCCeeEEEEEecCceeeec
Q 014475          264 SLSDHSKAVTCLAYST-GDLLISGS--EDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLG  328 (424)
Q Consensus       264 ~~~~~~~~i~~~~~~~-~~~l~t~~--~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~  328 (424)
                      .+..  ..+.  .++| ++.|.-++  ..+.|..-++. |...+.+...  .+.  .+++.+.+|.-.
T Consensus       221 ~Lt~--~~~~--~~~~~g~~Iy~~~~~~~~~i~~~~~D-G~~r~~l~~~--~~~--~i~i~~d~Iy~t  279 (302)
T 3s25_A          221 VLTE--ANIE--HYNVYGSLIFYQRGGDNPALCVVKND-GTGFKELAKG--EFC--NINVTSQYVYFT  279 (302)
T ss_dssp             ECSC--SCEE--EEEEETTEEEEEECSSSCEEEEEETT-SCCCEEEEES--CEE--EEEECSSEEEEE
T ss_pred             EEeC--CCcc--eEEECCCEEEEEECCCCcEEEEEECC-CCccEEeeCC--ccc--eEEEeCCEEEEE
Confidence            2211  2232  3666 77666542  34566666665 3333333321  233  445556666443

>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B

Probab=94.39  E-value=2  Score=36.22  Aligned_cols=204  Identities=15%  Similarity=0.114  Sum_probs=110.1

Q ss_pred             eeEEEEECCCC-ceeeeecCCCCeeEEEECCCCCEEEEecCCCcEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEE
Q 014475           61 GSILYWSWSKP-QVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLIS  139 (424)
Q Consensus        61 g~i~vwd~~~~-~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s  139 (424)
                      |.|..|-.... +.-........|..++...+.. ++. . ||.|+.|-....-.+..-..-...|..++...+  +.+.
T Consensus        42 G~v~~wG~n~~Gqlg~p~~~~~~i~~ia~G~~hs-~~l-~-~G~v~~wG~n~~Gqlg~P~~~~~~v~~ia~G~~--hs~a  116 (282)
T 3qhy_B           42 GKVLGWGANLNGQLTMPAATQSGVDAIAAGNYHS-LAL-K-DGEVIAWGGNEDGQTTVPAEARSGVDAIAAGAW--ASYA  116 (282)
T ss_dssp             TEEEEEECCSSSTTSCCGGGGSCCCEEEECSSEE-EEE-E-TTEEEEEECCTTSTTCCCGGGSSSEEEEEEETT--EEEE
T ss_pred             CEEEEEeCCCCCCCCCCccCCCCEEEEEeCCCEE-EEE-E-CCEEEEeeCCCCCCCCCCcccCCCeEEEECcCC--EEEE
Confidence            99999986543 2222222234677777765433 333 4 899999986543222211112346777777643  3344


Q ss_pred             eeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceee-eeecC
Q 014475          140 GSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLR-NIVFP  218 (424)
Q Consensus       140 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~-~~~~~  218 (424)
                      -. ||.|..|-.....+..         +  .......|..++....   ..++ -. ||.|..|-......+. .....
T Consensus       117 l~-~G~v~~wG~n~~gqlg---------~--~~~~~~~i~~i~~G~~---~~~~-l~-~G~v~~wG~n~~gqlg~p~~~~  179 (282)
T 3qhy_B          117 LK-DGKVIAWGDDSDGQTT---------V--PAEAQSGVTALDGGVY---TALA-VK-NGGVIAWGDNYFGQTTVPAEAQ  179 (282)
T ss_dssp             EE-TTEEEEEECCTTSTTS---------C--CGGGGSSEEEEEECSS---EEEE-EE-TTEEEEEECCTTSTTSCCGGGG
T ss_pred             Ee-CCeEEEecCCCCCcCC---------C--CccCCCCeEEEEcccC---EEEE-EE-CCEEEEecCCCCCCCCCceecC
Confidence            44 8999999765421110         0  0011234555544332   2333 34 7999999765422221 11123


Q ss_pred             cceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecCCCEEEEeCCCCcEEEEeCC
Q 014475          219 SVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTGDLLISGSEDGMVRVWDPI  298 (424)
Q Consensus       219 ~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~t~~~dg~i~iwd~~  298 (424)
                      ..|..++.-.... ++.  .+|.++.|-.........+         ......|..++......++..  ||.|..|-..
T Consensus       180 ~~v~~i~~G~~hs-~al--~~G~v~~wG~n~~gqlg~p---------~~~~~~v~~i~~G~~h~~al~--~g~v~~wG~n  245 (282)
T 3qhy_B          180 SGVDDVAGGIFHS-LAL--KDGKVIAWGDNRYKQTTVP---------TEALSGVSAIASGEWYSLALK--NGKVIAWGSS  245 (282)
T ss_dssp             SSEEEEEECSSEE-EEE--ETTEEEEEECCTTSTTCCC---------GGGGSSCCEEEECSSCEEEEE--TTEEEEESTT
T ss_pred             CCeEEEEecCCEE-EEE--ECCeEEEEECCCCCCCCCC---------cccCCCceEEEcCCCEEEEEE--CCEEEEecCC
Confidence            4566666644333 333  5999999987664322111         011235777776554444444  9999999766


Q ss_pred             CC
Q 014475          299 TH  300 (424)
Q Consensus       299 ~~  300 (424)
                      ..
T Consensus       246 ~~  247 (282)
T 3qhy_B          246 RT  247 (282)
T ss_dssp             CC
T ss_pred             CC
Confidence            54

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=94.02  E-value=3.5  Score=37.61  Aligned_cols=114  Identities=10%  Similarity=0.041  Sum_probs=59.4

Q ss_pred             CCeeEEEECCCCC-EEEEecCCCcEEEEEccCcc---eeeeec---------cccCCeEEEEEccC----CcEEEEeeCC
Q 014475           81 EPIKPIAANSHGT-YIAGGGQSGDIYMWEVASGR---LLKKWH---------AHYRAVTCLVFSED----GSFLISGSED  143 (424)
Q Consensus        81 ~~v~~~~~s~~~~-~l~~~~~dg~v~iwd~~~~~---~~~~~~---------~~~~~i~~~~~~~~----~~~l~s~~~d  143 (424)
                      .....|+|.|+|. .++++...|.|++++.....   .+..+.         ........|+|+|+    +.+.++-+.+
T Consensus        14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~   93 (463)
T 2wg3_C           14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTN   93 (463)
T ss_dssp             SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEEC
T ss_pred             CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCC
Confidence            4568999999986 34445678999999753221   122221         11356789999985    4444443321


Q ss_pred             ------------CcEEEEeCCcccchhcccccccceEEee--cCCcCceeEEEEEEcCceeEEEEEeC
Q 014475          144 ------------GCVRIWSLLTVFEECESQRASHLYLHSF--TGHTLRITDIVIGYGGVSATIVSASE  197 (424)
Q Consensus       144 ------------g~i~iwd~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~~~l~~~~~  197 (424)
                                  ..|.-|.+....... ........+..+  .........|+|.|++  .+.++.+.
T Consensus        94 ~~~~~~~~~~~~~~v~r~~~~~~~~~~-~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG--~LYv~~Gd  158 (463)
T 2wg3_C           94 QERWAIGPHDHILRVVEYTVSRKNPHQ-VDLRTARVFLEVAELHRKHLGGQLLFGPDG--FLYIILGD  158 (463)
T ss_dssp             CCSSCSSSSCEEEEEEEEEBCTTCTTS-BCGGGCEEEEEEEESSSSSCEEEEEECTTS--CEEEEECC
T ss_pred             CCCcccCCcccceEEEEEEEcCCCCCc-cCCCCceEEEEcCCCCCcccCCcEeECCCC--cEEEEeCC
Confidence                        134445554321100 000011111111  1222345789999988  56555544

>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}

Probab=93.79  E-value=3  Score=36.01  Aligned_cols=243  Identities=13%  Similarity=0.002  Sum_probs=131.0

Q ss_pred             CEEEEecCCCcEEEEEccCcce---------eeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhccccc
Q 014475           93 TYIAGGGQSGDIYMWEVASGRL---------LKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRA  163 (424)
Q Consensus        93 ~~l~~~~~dg~v~iwd~~~~~~---------~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~  163 (424)
                      ..+++.+.+|.|+--.+.+.+.         -..++ ....+..+........++.-+..|.++-...........  ..
T Consensus         4 ~v~v~ls~~GyiKr~~~~~y~~~~rgg~g~~~~~~k-e~D~~~~~~~~~t~d~ll~fT~~Gr~y~~~~~~lp~~~r--~~   80 (327)
T 3uc1_A            4 DVVVTITETGYAKRTKTDLYRSQKRGGKGVQGAGLK-QDDIVAHFFVCSTHDLILFFTTQGRVYRAKAYDLPEASR--TA   80 (327)
T ss_dssp             EEEEEEETTSEEEEEEHHHHHHHC--------CCCC-GGGCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCS--SS
T ss_pred             cEEEEEeCCCEEEEeeHHHhhhcccCCCCccccccC-CCCEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCcCCCc--cC
Confidence            4567778888888765433211         11222 234455555555555666667788776655433211100  01


Q ss_pred             ccceEE---eecCCcCceeEEEEEEc-CceeEEEEEeCCCcEEEEecCCCce-------eeeeecCcceeEEEECCCCCE
Q 014475          164 SHLYLH---SFTGHTLRITDIVIGYG-GVSATIVSASEDRTCKVWSLLKGRL-------LRNIVFPSVIDAIALDPAEHV  232 (424)
Q Consensus       164 ~~~~~~---~~~~~~~~i~~~~~~~~-~~~~~l~~~~~d~~v~iwd~~~~~~-------~~~~~~~~~i~~~~~~~~~~~  232 (424)
                      ...++.   .+. ....|..+....+ .+...++..+.+|.++.-.+.....       ...+...+.+..+........
T Consensus        81 ~G~~i~~~l~l~-~~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke~D~lv~~~~~~~~d~  159 (327)
T 3uc1_A           81 RGQHVANLLAFQ-PEERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRDNDELVGAVLCSAGDD  159 (327)
T ss_dssp             CCEEHHHHTTCC-TTCCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCTTCCEEEEEEECTTCE
T ss_pred             CCEEHHHccCCC-CCCEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhccccCceEEEEECCCCEEEEEEEecCCCE
Confidence            111111   122 2344555544332 1227899999999999988654221       122333455555555555667


Q ss_pred             EEEEeCCCcEEEEEcC--CCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCCCc-------E
Q 014475          233 FYAGSRDGSIYIAALN--AESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHN-------I  302 (424)
Q Consensus       233 l~~~~~dg~i~i~d~~--~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~-------~  302 (424)
                      ++..+..|.+..+...  .-..............+. ....|.++...+ +..++..+..|.++.-.+....       -
T Consensus       160 ill~T~~G~~~rf~~~~~eip~~gr~a~Gv~~i~L~-~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G  238 (327)
T 3uc1_A          160 LLLVSANGQSIRFSATDEALRPMGRATSGVQGMRFN-IDDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKG  238 (327)
T ss_dssp             EEEEETTSEEEEEECCTTTSCCCCTTSBCEESSCCC-TTCCEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCC
T ss_pred             EEEEECCCeEEEEECcccccCcCCcCCCCeeeecCC-CCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCCc
Confidence            8888999999988887  322211111111122232 234566665555 7789999999999888754322       1


Q ss_pred             EEEEe--ccCCCeeEEEEEecCceeeeccCCCceeeccCC
Q 014475          303 VRMFR--LAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRH  340 (424)
Q Consensus       303 ~~~~~--~~~~~v~~l~~s~~~~~l~~~~~d~~i~iw~~~  340 (424)
                      +..++  .-.+.+-.+....+...++..+.+|.+.-+...
T Consensus       239 ~~~~~l~~~~d~lv~~~~~~~~~~i~l~T~~G~~ir~~~~  278 (327)
T 3uc1_A          239 VLTVMYDRRRGRLVGALIVDDDSELYAVTSGGGVIRTAAR  278 (327)
T ss_dssp             EESSCCCTTTCSEEEEEEECTTCEEEEEEGGGCEEEEEGG
T ss_pred             EEEEEecCCCCeEEEEEEeCCCccEEEEcCCCeEEEEehh
Confidence            22222  213455555555455566666777776666554

>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}

Probab=93.50  E-value=3.2  Score=35.46  Aligned_cols=246  Identities=12%  Similarity=0.034  Sum_probs=126.9

Q ss_pred             CCCCEEEEecCCCcEEEEEccCcceee---------eeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcc
Q 014475           90 SHGTYIAGGGQSGDIYMWEVASGRLLK---------KWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECES  160 (424)
Q Consensus        90 ~~~~~l~~~~~dg~v~iwd~~~~~~~~---------~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~  160 (424)
                      |+..++++.+.+|.|+--.+.+.+...         .++.+ +.+..+........++..+..|.++-+...........
T Consensus         1 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~~ke~-D~l~~~~~~~~~~~ll~fT~~G~~~~~~~~elp~~~~~   79 (307)
T 1zi0_A            1 TQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEE-DFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRG   79 (307)
T ss_dssp             CCCEEEEEEETTSEEEEEECC---------------------CCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCCCCSS
T ss_pred             CCCcEEEEEeCCCEEEEeeHHHhhhhccCCCCceeeeeCCC-CEEEEEEEECCCCEEEEEECCCEEEEEEhhHCcCCCCC
Confidence            456678888899999877664432211         12222 34444444445566777778888776665432211110


Q ss_pred             cccccceEE---eecCCcCceeEEEEEEc-CceeEEEEEeCCCcEEEEecCCCc-------eeeeeecCcceeEEEECCC
Q 014475          161 QRASHLYLH---SFTGHTLRITDIVIGYG-GVSATIVSASEDRTCKVWSLLKGR-------LLRNIVFPSVIDAIALDPA  229 (424)
Q Consensus       161 ~~~~~~~~~---~~~~~~~~i~~~~~~~~-~~~~~l~~~~~d~~v~iwd~~~~~-------~~~~~~~~~~i~~~~~~~~  229 (424)
                        ....++.   .+. ....|.++...++ .+...++..+..|.++.-.+..-.       ....+...+.+-.+.....
T Consensus        80 --a~G~~i~~~l~l~-~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~r~G~~~i~l~~~d~lv~~~~~~~  156 (307)
T 1zi0_A           80 --ARGRPIVNLLPLE-QDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSG  156 (307)
T ss_dssp             --SCCEEGGGTSCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTCCTTCEESSCCCTTCCEEEEEEECT
T ss_pred             --CCCeEhhhccCCC-CCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhccccCCeEEEEECCCCEEEEEEEeCC
Confidence              1111111   122 2334555543221 112578899999999998764221       1122223345555544445


Q ss_pred             CCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCCCc-------
Q 014475          230 EHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHN-------  301 (424)
Q Consensus       230 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~-------  301 (424)
                      ...++..+.+|.+..++...-..............+. ....|.++...+ +..+++.+..|.++-.++....       
T Consensus       157 ~~~i~l~T~~G~~irf~~~~v~~~gr~a~Gv~~i~L~-~~d~Vv~~~~~~~~~~ll~~T~~G~~Kr~~~~e~~~~~Rg~k  235 (307)
T 1zi0_A          157 EDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLG-EGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATK  235 (307)
T ss_dssp             TCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCC-TTCCEEEEECCCSSCEEEEEETTSEEEEECGGGSCCCCTTSC
T ss_pred             CCEEEEECCCCcEEEEEHHHcCccCCCCCCeEeEEeC-CCCEEEEEEEecCCCEEEEEEcCCceEEEEHHHhccCCCCCC
Confidence            5678888899998888876543222111111112232 234566665444 6678888889999888764211       


Q ss_pred             --EEEEEeccCCCeeEEEEEecCceeeeccCCCceeeccCC
Q 014475          302 --IVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRH  340 (424)
Q Consensus       302 --~~~~~~~~~~~v~~l~~s~~~~~l~~~~~d~~i~iw~~~  340 (424)
                        ....+..-.+.+-.+....+...|+..+.+|.+.-....
T Consensus       236 G~~~~~~~~~~~~lv~~~~v~~~~~l~~~t~~g~~ir~~~~  276 (307)
T 1zi0_A          236 GVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVS  276 (307)
T ss_dssp             CEESSCCCTTTCSEEEEEEECTTCEEEEEESSCCEEEEEGG
T ss_pred             CEEeeEecCCCCeEEEEEEeCCCceEEEEcCCCcEEEEecc
Confidence              111222223455555444444555555666665544443

>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}

Probab=93.29  E-value=4  Score=35.91  Aligned_cols=246  Identities=12%  Similarity=-0.012  Sum_probs=129.2

Q ss_pred             ECCCCCEEEEecCCCcEEEEEccCc---------ceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchh
Q 014475           88 ANSHGTYIAGGGQSGDIYMWEVASG---------RLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEEC  158 (424)
Q Consensus        88 ~s~~~~~l~~~~~dg~v~iwd~~~~---------~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~  158 (424)
                      +-|+..++++.+.+|.|+--.+.+.         .....++ ....+..+........++..+..|.++-+.........
T Consensus         3 lI~~e~~~v~lT~~GyIKr~~l~~y~~~~r~g~g~~~~~lk-e~D~l~~~~~~~t~d~ll~fT~~G~~~~~~~~eip~~~   81 (370)
T 3l6v_A            3 LIAPEDVVVTLSHAGYAKRQPVSAYRAQRRGGRGRSAASTK-EEDFIDQLWLVNTHDTLLTFTSSGKVFWLPVHQLPEAG   81 (370)
T ss_dssp             CCCCCCEEEEEESSCEEEEEEHHHHHHTCCCCCCSEEEECS-CCCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCC
T ss_pred             cccCCCEEEEEeCCCEEEEeeHHHhhhhccCCCCceecccC-CCCEEEEEEEecCCCEEEEEeCCCeEEEEEHHHCcCCC
Confidence            3467788999999999998665332         1122233 34556666665556667777888887766654322111


Q ss_pred             cccccccceEE---eecCCcCceeEEEEEEc-CceeEEEEEeCCCcEEEEecCCCc-------eeeeeecCcceeEEEEC
Q 014475          159 ESQRASHLYLH---SFTGHTLRITDIVIGYG-GVSATIVSASEDRTCKVWSLLKGR-------LLRNIVFPSVIDAIALD  227 (424)
Q Consensus       159 ~~~~~~~~~~~---~~~~~~~~i~~~~~~~~-~~~~~l~~~~~d~~v~iwd~~~~~-------~~~~~~~~~~i~~~~~~  227 (424)
                      ..  ....++.   .+. ....|.++....+ ....+++.++..|.++.-.+....       ....+...+.+-.+...
T Consensus        82 r~--a~G~~i~~ll~L~-~~e~Iv~~~~~~~~~~~~~ll~~T~~G~vKrt~l~e~~~~~~~G~~ai~L~~~d~lv~v~~~  158 (370)
T 3l6v_A           82 SN--ARGRPIINWIPLE-SGERVQAVLPVREYADNRYVFMATRNGTVKKTPLSEFAFRLARGKIAINLDEGDALVGVALT  158 (370)
T ss_dssp             TT--SCCEEGGGSCCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCSCCTTCEESSCCCTTCCEEEEEEE
T ss_pred             cc--cCCcCHhhccCCC-CCCEEEEEEEeccCCCCcEEEEEeCCCeEEEeEHHHhhcccCCceEEEEeCCCCEEEEEEEe
Confidence            00  1111111   122 2345555543321 122689999999999988764322       12222333444444444


Q ss_pred             CCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEec-----------------------------
Q 014475          228 PAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYS-----------------------------  278 (424)
Q Consensus       228 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-----------------------------  278 (424)
                      .....++..+.+|.+..++...-.........-....+.. ...|.++...                             
T Consensus       159 ~~~~~i~l~T~~G~~irf~~~~v~~~gR~a~GV~~i~L~~-~d~Vv~~~~~~~~~~~~~~~~~~~~~~~~~t~~g~~~~~  237 (370)
T 3l6v_A          159 DGDRDVLLFASNGKTVRFGESTVRSMGRTATGVRGIRLAK-GEEVVSLIVSERAGGVEDEVEDESAEEVVETTDGAEPAV  237 (370)
T ss_dssp             CSCCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCT-TCCEEEEEEECCC--------------------------
T ss_pred             CCCceEEEEeCCCeEEEEEccccCccCCCCCCeeeEEeCC-CCEEEEEEEeccccccccccccccccccccccccccccc
Confidence            5556788888899988888755432222111111111221 2333333222                             


Q ss_pred             -------CCCEEEEeCCCCcEEEEeCCCCc-------EEE--EEeccCCCeeEEEEEecCceeeeccCCCceeecc
Q 014475          279 -------TGDLLISGSEDGMVRVWDPITHN-------IVR--MFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSR  338 (424)
Q Consensus       279 -------~~~~l~t~~~dg~i~iwd~~~~~-------~~~--~~~~~~~~v~~l~~s~~~~~l~~~~~d~~i~iw~  338 (424)
                             .+..+++.+..|..+...+..-.       =+.  .+....+.+-.+.+..+...++..+..|.+.-..
T Consensus       238 ~~~~~~~~~~~il~vTe~G~gKrt~~~e~~~~~Rg~kGv~~~k~~~~~g~lv~~~~v~~~d~i~liT~~G~~iR~~  313 (370)
T 3l6v_A          238 IDVADNGDVAYILTATENGYGKRTPLAEYPRKGRGTQGVIGIQTTERNGKLVRAVLLGSTDEVMLISDGGTLVRTR  313 (370)
T ss_dssp             ---------CEEEEEETTSEEEEEEGGGSCCBCTTSCCEESSCCCTTTCSEEEEEEECTTCEEEEEETTCCEEEEE
T ss_pred             cccccccCCceEEEeeCCCCEEEEEHHHhcccccCCcceEEEEecCCCCcEEEEEEeCCCceEEEEcCCCeEEEee
Confidence                   23578888889988888764321       122  2222234555554444444555555566544333

>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1

Probab=92.99  E-value=4  Score=35.13  Aligned_cols=246  Identities=9%  Similarity=-0.028  Sum_probs=129.9

Q ss_pred             CCCCEEEEecCCCcEEEEEccCcc----eeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhccccccc
Q 014475           90 SHGTYIAGGGQSGDIYMWEVASGR----LLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASH  165 (424)
Q Consensus        90 ~~~~~l~~~~~dg~v~iwd~~~~~----~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~  165 (424)
                      |+..++++.+.+|.|+--.+.+.+    ....++.. +.+..+........++..+..|.++-+...........  ...
T Consensus         3 ~~e~~~v~lT~~G~IKr~~~~~~~~~~~~~~~lke~-D~l~~~~~~~t~d~ll~fT~~Gr~~~~~~~elp~~~r~--a~G   79 (323)
T 1wp5_A            3 ASEDVIVTVTKDGYVKRTSLRSYAASNGQDFAMKDT-DRLLAMLEMNTKDVLLLFTNKGNYLYCPVHELPDIRWK--DLG   79 (323)
T ss_dssp             SCCEEEEEEETTCEEEEEEHHHHHHTTTCCCCCCTT-CCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCTT--SCC
T ss_pred             cCCcEEEEEeCCCEEEEeEHHHhhhcCccccccCCC-CEEEEEEEECCCCEEEEEECCCEEEEEEHHHCcCCCCC--CCC
Confidence            566778888999999877654221    11223333 34555555555667777788888776665432211110  111


Q ss_pred             ceEE---eecCCcCceeEEEEEEc-CceeEEEEEeCCCcEEEEecCCCc--------eeeeeecCcceeEEEECCCCCEE
Q 014475          166 LYLH---SFTGHTLRITDIVIGYG-GVSATIVSASEDRTCKVWSLLKGR--------LLRNIVFPSVIDAIALDPAEHVF  233 (424)
Q Consensus       166 ~~~~---~~~~~~~~i~~~~~~~~-~~~~~l~~~~~d~~v~iwd~~~~~--------~~~~~~~~~~i~~~~~~~~~~~l  233 (424)
                      .++.   .+. ....|.++...++ .+..+++..+..|.++.-.+..-.        ....+...+.+-.+........+
T Consensus        80 ~~i~~~i~L~-~~e~Iv~~~~~~~~~~~~~ll~~T~~G~iKrt~l~e~~~~~r~~G~~ai~l~e~d~lv~~~~~~~~~~i  158 (323)
T 1wp5_A           80 QHIANIIPID-RDEEIIKAIPINDFELNGYFLFVTRNGMVKKTELKHYKAQRYSKPLTGINLKNDDQVVDVHLTDGMNEL  158 (323)
T ss_dssp             EEGGGTSCCC-TTCCEEEEEEESCTTSSCEEEEEETTSEEEEEEGGGGCCSCCSSCEECSCCCTTCCEEEEEEECSCSEE
T ss_pred             cChhhccCCC-CCCEEEEEEEecccCCCceEEEEeCCCeEEEeEHHHhhhccccCceEEEEeCCCCEEEEEEEeCCCCEE
Confidence            1111   122 2234555433332 112578899999999998874221        11222333555555554556678


Q ss_pred             EEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CC-EEEEeCCCCcEEEEeCCCC-------cEEE
Q 014475          234 YAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GD-LLISGSEDGMVRVWDPITH-------NIVR  304 (424)
Q Consensus       234 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~-~l~t~~~dg~i~iwd~~~~-------~~~~  304 (424)
                      +..+.+|.+..+....-..............+. ....|.++...+ +. .+++.+..|..+..++..-       +-+.
T Consensus       159 ~l~T~~G~~irf~~~ev~~~gR~a~GV~~i~L~-~~d~Vv~~~~~~~~~~~ll~vt~~G~gKr~~~~e~~~~~Rg~kGv~  237 (323)
T 1wp5_A          159 FLVTHNGYALWFDESEVSIVGVRAAGVKGMNLK-EGDYIVSGQLITSKDESIVVATQRGAVKKMKLTEFEKATRAKRGVV  237 (323)
T ss_dssp             EEEETTSEEEEEEGGGSCBCCSSCCCEECCCCC-TTCCEEEEEEECCTTCEEEEEETTSEEEEEEGGGSCCCCTTSCCEE
T ss_pred             EEEeCCCcEEEEEHHHCcccCCCCcCEEEEEeC-CCCEEEEEEEEcCCCcEEEEEECCCceEEEEHHHccccCCCCCCEE
Confidence            888999999998886543222211111222232 234566654434 55 7888888888887776531       1122


Q ss_pred             EEe---ccCCCeeEEEEEecCceeeeccCCCceeeccCC
Q 014475          305 MFR---LAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRH  340 (424)
Q Consensus       305 ~~~---~~~~~v~~l~~s~~~~~l~~~~~d~~i~iw~~~  340 (424)
                      .++   .....+..+....++..++..+..|.+.-..+.
T Consensus       238 ~~~~~~~~~~~l~~~~~v~~~~~i~~it~~g~~ir~~~~  276 (323)
T 1wp5_A          238 ILRELKANPHRISGFVVAQDSDTIYLQTEKSFIETIKVG  276 (323)
T ss_dssp             CSCCCSSSCCCEEEEEEECTTCEEEEEETTSCEEEEEGG
T ss_pred             CeeecCCCCceEEEEEEeCCCCeEEEEeCCCeEEEEEhh
Confidence            222   112245444333434455566666765544443

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=92.83  E-value=4.1  Score=34.74  Aligned_cols=175  Identities=9%  Similarity=0.063  Sum_probs=95.7

Q ss_pred             eecCCCccccCCCC-------------ceeEEEEECCCCceeeeecCCCCeeEEEECCCCCEEEEec--CC--CcEEEEE
Q 014475           46 FLASSQLREQPSAS-------------SGSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGG--QS--GDIYMWE  108 (424)
Q Consensus        46 ~~~~~~~l~~~~~~-------------~g~i~vwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~d--g~v~iwd  108 (424)
                      +++++.++..+...             ...|+..+++..+......  ..  +..|++++++|+-..  .+  ..|+..+
T Consensus        60 i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~l~~--~~--~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~  135 (302)
T 3s25_A           60 INADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTVLDP--DP--CIYASLIGNYIYYLHYDTQTATSLYRIR  135 (302)
T ss_dssp             EEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEEEEC--SC--EEEEEEETTEEEEEEESSSSCEEEEEEE
T ss_pred             EEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceEeec--CC--ccEEEEeCCEEEEEeecCCCCceEEEEE
Confidence            66888887776543             2578888888776443322  22  236777888888765  23  3455556


Q ss_pred             ccCcceeeeeccccCCeEEEEEccCCcEEEEeeC-CCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcC
Q 014475          109 VASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSE-DGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGG  187 (424)
Q Consensus       109 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  187 (424)
                      +.. .....+..+..    ..++++++.|.-.+. ...|...++....         ...+  +.+   ... ..+.|++
T Consensus       136 ~dG-s~~~~lt~~~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~---------~~~l--~~~---~~~-~~~~P~g  195 (302)
T 3s25_A          136 IDG-EEKKKIKNHYL----FTCNTSDRYFYYNNPKNGQLYRYDTASQS---------EALF--YDC---NCY-KPVVLDD  195 (302)
T ss_dssp             TTS-CCCEEEESSCC----CCSEEETTEEEEECTTTCCEEEEETTTTE---------EEEE--ECS---CEE-EEEEEET
T ss_pred             CCC-CCeEEEeCCCc----eEeeEECCEEEEEeCCCceEEEEECCCCC---------EEEE--eCC---Ccc-ceeeecC
Confidence            543 33344433322    345677777775554 5678777775421         1111  121   111 2355777


Q ss_pred             ceeEEEEEeCC--CcEEEEecCCCceeeeeecCcceeEEEECCCCCEEEEEeC--CCcEEEEEcCCC
Q 014475          188 VSATIVSASED--RTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSR--DGSIYIAALNAE  250 (424)
Q Consensus       188 ~~~~l~~~~~d--~~v~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~--dg~i~i~d~~~~  250 (424)
                        ..|+-...+  ..|..-++..... ..+. ...+  ..++|++.+|+-+..  .+.|..-+++..
T Consensus       196 --~~iy~t~~~~~~~I~~~~ldG~~~-~~Lt-~~~~--~~~~~~g~~Iy~~~~~~~~~i~~~~~DG~  256 (302)
T 3s25_A          196 --TNVYYMDVNRDNAIVHVNINNPNP-VVLT-EANI--EHYNVYGSLIFYQRGGDNPALCVVKNDGT  256 (302)
T ss_dssp             --TEEEEEEGGGTTEEEEECSSSCCC-EECS-CSCE--EEEEEETTEEEEEECSSSCEEEEEETTSC
T ss_pred             --CEEEEEEcCCCcEEEEEECCCCCe-EEEe-CCCc--ceEEECCCEEEEEECCCCcEEEEEECCCC
Confidence              555554433  3566666654442 2232 2223  347788888876533  356666666654

>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}

Probab=92.07  E-value=6.1  Score=35.02  Aligned_cols=225  Identities=7%  Similarity=-0.018  Sum_probs=100.9

Q ss_pred             CeeEEEECC-C-CCEEEEecCCCcEEEEEccCcceeeeecc-------------------ccCCeEEEEEcc-CCcEEEE
Q 014475           82 PIKPIAANS-H-GTYIAGGGQSGDIYMWEVASGRLLKKWHA-------------------HYRAVTCLVFSE-DGSFLIS  139 (424)
Q Consensus        82 ~v~~~~~s~-~-~~~l~~~~~dg~v~iwd~~~~~~~~~~~~-------------------~~~~i~~~~~~~-~~~~l~s  139 (424)
                      .|.++++.| + ...+.+++..+.|...+ ..++.-..+..                   ....+.+|.+.| +...+..
T Consensus       116 ~i~~l~~~~~~~~~~l~~g~~~ggl~~S~-DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~v  194 (394)
T 3b7f_A          116 HVFWLTPGHASEPGTWYAGTSPQGLFRST-DHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYI  194 (394)
T ss_dssp             EEEEEEECCTTSTTCEEEEEETTEEEEES-STTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEE
T ss_pred             ceeEEEeCCCCCCCEEEEEecCCcEEEEc-CCCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEEE
Confidence            577899987 2 45555555555555443 22222222211                   123578899987 3444555


Q ss_pred             eeCCCcEEEEeCCcccchhcccccccceEEeec----CCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeee
Q 014475          140 GSEDGCVRIWSLLTVFEECESQRASHLYLHSFT----GHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNI  215 (424)
Q Consensus       140 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~----~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~  215 (424)
                      +..++.|...+  .+............ ...+.    .....+.++.+.+... ..+..+...+ |...+ ..++.-..+
T Consensus       195 g~~~ggl~~s~--DgG~tW~~~~~~~~-~~~~p~~~~~~g~~~~~i~~~~~~~-~~l~vg~~~g-l~~s~-D~G~tW~~~  268 (394)
T 3b7f_A          195 GMSSGGVFEST--DAGTDWKPLNRGCA-ANFLPDPNVEFGHDPHCVVQHPAAP-DILYQQNHCG-IYRMD-RREGVWKRI  268 (394)
T ss_dssp             EEETBEEEEES--STTSSCEECCTTCC-CTTSSSSSSSSCBCEEEEEECSSST-TEEEEEETTE-EEEEE-TTTTEEECG
T ss_pred             EECCCCEEEEC--CCCCCceECCCCcc-ccccCCCccccCcceeEEEECCCCC-CEEEEEcCCe-EEEeC-CCCCcceEC
Confidence            55444444332  21111000000000 00000    0012477888877533 4555565544 44333 223322222


Q ss_pred             e--cC----cceeEEEECC-CCCEEEEEeC-----------CCcEEEEEcCCCCCCCCCcCceeeee-ecccCc----Ce
Q 014475          216 V--FP----SVIDAIALDP-AEHVFYAGSR-----------DGSIYIAALNAESPSTSSYGMHIIGS-LSDHSK----AV  272 (424)
Q Consensus       216 ~--~~----~~i~~~~~~~-~~~~l~~~~~-----------dg~i~i~d~~~~~~~~~~~~~~~~~~-~~~~~~----~i  272 (424)
                      .  .+    ..+..+.++| +...++++..           ++...+|....+...     ++.+.. +.....    ..
T Consensus       269 ~~~l~~~~~~~~~~i~~~p~~~~~l~~~t~~~~~~w~~~~~~~~~~~~~S~DgG~t-----W~~~~~glp~~~~~~~~~~  343 (394)
T 3b7f_A          269 GDAMPREVGDIGFPIVVHQRDPRTVWVFPMDGSDVWPRVSPGGKPAVYVTRDAGES-----WQRQDRGLPTDQAWLTVKR  343 (394)
T ss_dssp             GGGSCTTTCSCEEEEEECSSCTTCEEEEECBCCSSTTCCBCCSSCCEEEESSTTSC-----CEEECBTSCCSSCCCCCCT
T ss_pred             CCCCCCCCccceEEEEECCCCCCEEEEEeccCCccceeecCCCceeEEEECCCCCC-----ceECCCCCCCccccceEEE
Confidence            2  11    2356788887 3445555532           333456655543211     121111 111000    11


Q ss_pred             EEEEecC--CCEEEEeCCCCcEEEEeCCCCcEEEEEeccCCCeeEEEEE
Q 014475          273 TCLAYST--GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVV  319 (424)
Q Consensus       273 ~~~~~~~--~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s  319 (424)
                      ..++++|  ...|+.++.++.|..-+ ..++.-..+..+-..+.++.|.
T Consensus       344 ~~~~~~p~~~~~l~~g~~~g~l~~S~-D~G~tW~~~~~~lp~~~~v~~~  391 (394)
T 3b7f_A          344 QAMTADAHAPVGVYFGTTGGEIWASA-DEGEHWQCIASHLPHIYAVQSA  391 (394)
T ss_dssp             BSEEECCSSSCCEEEECTTSCEEEES-STTSBCEEEECSCSCEEEEEEE
T ss_pred             EEEEECCCCCCEEEEEeCCCeEEEEC-CCCCCceEcccCCCCeeEEEEe
Confidence            3577777  35566676666554433 3344444554444567777664

>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}

Probab=91.53  E-value=7.1  Score=34.63  Aligned_cols=213  Identities=17%  Similarity=0.112  Sum_probs=107.1

Q ss_pred             CCCeeEEEECCCCCEEEEecCCCcEEEEEccCcce-----------eeeecc-ccCCeEEEEEccCCcEEEEeeCCCcEE
Q 014475           80 AEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRL-----------LKKWHA-HYRAVTCLVFSEDGSFLISGSEDGCVR  147 (424)
Q Consensus        80 ~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~-----------~~~~~~-~~~~i~~~~~~~~~~~l~s~~~dg~i~  147 (424)
                      ...+..++++......++-..||.|+.|-....-.           ...+.. ....|..++..  ..+.+....+|.|.
T Consensus       104 ~~~~~~v~i~~G~~h~~al~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~va~G--~~hs~alt~~G~v~  181 (389)
T 3kci_A          104 HVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLGHGNRSPCDRPRVIESLRGIEVVDVAAG--GAHSACVTAAGDLY  181 (389)
T ss_dssp             TSCEEEEEECTTCSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEEC--SSEEEEEETTSCEE
T ss_pred             CCceeEEEECcCCCeEEEEcCCCCEEEEeCCCCCcCCCCCCccCcCCeEecccCCCeEEEEEeC--cCeEEEEeCCCeEE
Confidence            34566677777666777678899999996543110           111111 12256666654  44566667899999


Q ss_pred             EEeCCcccchhcccccc-cceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCC-c----------eeeee
Q 014475          148 IWSLLTVFEECESQRAS-HLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKG-R----------LLRNI  215 (424)
Q Consensus       148 iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~-~----------~~~~~  215 (424)
                      .|-.....+........ ..+..........|..++.....  .+.+....+|.|..|-.... +          ....+
T Consensus       182 ~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~v~~ia~G~g~--~~t~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v  259 (389)
T 3kci_A          182 TWGKGRYGRLGHSDSEDQLKPKLVEALQGHRVVDIACGSGD--AQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKI  259 (389)
T ss_dssp             EEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEECCSS--CEEEEEETTTEEEEEECCGGGTTSSSSCCCEEEEEEC
T ss_pred             EeCCCCCCCcCCCCCcccccceEecccCCCeEEEEEEcCCC--cEEEEEccCCEEEEEeCCCCCCCCCCCCCCccccEEe
Confidence            99765422111110000 01111111122345555543322  45666778999999965421 1          11111


Q ss_pred             ec--CcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCC---cCceeeeeecccCcCeEEEEecCCCEEEEeCCCC
Q 014475          216 VF--PSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSS---YGMHIIGSLSDHSKAVTCLAYSTGDLLISGSEDG  290 (424)
Q Consensus       216 ~~--~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~---~~~~~~~~~~~~~~~i~~~~~~~~~~l~t~~~dg  290 (424)
                      ..  ...|..++.  .....++-..+|.|+.|-..........   ....+..........|..++.. ....+.-..||
T Consensus       260 ~~~~~~~v~~v~~--G~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~v~~ia~G-~~h~~al~~~G  336 (389)
T 3kci_A          260 DSLTGLGVVKVEC--GSQFSVALTKSGAVYTWGKGDYHRLGHGSDDHVRRPRQVQGLQGKKVIAIATG-SLHCVCCTEDG  336 (389)
T ss_dssp             GGGTTSCEEEEEE--ETTEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEEEC-SSEEEEEETTC
T ss_pred             cccCCCcEEEEeC--CCCEEEEEeCCCeEEEEeCCCCCCCCCCCCccccCCeEeccCCCCCEEEEEec-cCeEEEECCCC
Confidence            11  123444443  3344555578999999987543221110   0001111111122356666654 34444456789


Q ss_pred             cEEEEeCCC
Q 014475          291 MVRVWDPIT  299 (424)
Q Consensus       291 ~i~iwd~~~  299 (424)
                      .|..|-...
T Consensus       337 ~v~~wG~n~  345 (389)
T 3kci_A          337 EVYTWGDND  345 (389)
T ss_dssp             CEEEEECCT
T ss_pred             CEEEeeCCC
Confidence            999997653

>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}

Probab=91.07  E-value=7.9  Score=34.31  Aligned_cols=70  Identities=10%  Similarity=0.085  Sum_probs=36.1

Q ss_pred             cCCCCeeEEEECC--CCCEEEEecCCC----cEEEEEccCcceeeeec------c--------ccCCeEEEEEcc-C-Cc
Q 014475           78 LPAEPIKPIAANS--HGTYIAGGGQSG----DIYMWEVASGRLLKKWH------A--------HYRAVTCLVFSE-D-GS  135 (424)
Q Consensus        78 ~~~~~v~~~~~s~--~~~~l~~~~~dg----~v~iwd~~~~~~~~~~~------~--------~~~~i~~~~~~~-~-~~  135 (424)
                      .....|.+|++.|  .+.+.+ ++..|    .|...+ ..++.-..+.      .        ....|.++++.| + ..
T Consensus        52 ~~~~~v~~i~~dp~~~~~l~~-g~~~g~~g~gl~~s~-D~G~tW~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~  129 (394)
T 3b7f_A           52 FLGHTIHHIVQDPREPERMLM-AARTGHLGPTVFRSD-DGGGNWTEATRPPAFNKAPEGETGRVVDHVFWLTPGHASEPG  129 (394)
T ss_dssp             STTSEEEEEEECSSSTTCEEE-EEEC--CCEEEEEES-STTSCCEECSBCCCCCCCC----CCCCCEEEEEEECCTTSTT
T ss_pred             CCCCceEEEEECCCCCCeEEE-EecCCCCCccEEEeC-CCCCCceECCccccCCCcccccccccccceeEEEeCCCCCCC
Confidence            3456799999998  454444 44444    343332 2232212111      0        112477888986 2 45


Q ss_pred             EEEEeeCCCcEEEE
Q 014475          136 FLISGSEDGCVRIW  149 (424)
Q Consensus       136 ~l~s~~~dg~i~iw  149 (424)
                      .+..+...+.|...
T Consensus       130 ~l~~g~~~ggl~~S  143 (394)
T 3b7f_A          130 TWYAGTSPQGLFRS  143 (394)
T ss_dssp             CEEEEEETTEEEEE
T ss_pred             EEEEEecCCcEEEE
Confidence            56666555555444

>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1

Probab=91.02  E-value=6.8  Score=33.52  Aligned_cols=195  Identities=8%  Similarity=0.029  Sum_probs=109.6

Q ss_pred             ecCCCccccCCCCceeEEEEECCCCce---------eeeecCCCCeeEEEECCCCCEEEEecCCCcEEEEEccCc-----
Q 014475           47 LASSQLREQPSASSGSILYWSWSKPQV---------EVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASG-----  112 (424)
Q Consensus        47 ~~~~~~l~~~~~~~g~i~vwd~~~~~~---------~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~-----  112 (424)
                      -++...+++.+.+ |.|+--....-..         .......+.+..+........++..+..|.++-.....-     
T Consensus         5 i~~e~~~v~~T~~-G~iKr~~~~~~~~~~~~~~g~~~~~lke~D~l~~~~~~~~~~~ll~~T~~G~~~~~~~~~ip~~~r   83 (312)
T 1suu_A            5 MQKENIVVMLTKK-GFLKRLSQNEYKLQGTGGKGLSSFDLNDGDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSR   83 (312)
T ss_dssp             ---CEEEEEEETT-CBEEEEEGGGSCBCCSSCCCEECCCCCTTCCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCC---
T ss_pred             cCCCCEEEEEeCC-CEEEEeEHHHhhccccCCCCceecccCCCCEEEEEEEECCCCEEEEEECCCeEEEEEHHHCCCCCc
Confidence            3455556666665 7777665432211         111123445555555555566777778888777665321     


Q ss_pred             ----ce---eeeeccccCCeEEEEEcc---CCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEE
Q 014475          113 ----RL---LKKWHAHYRAVTCLVFSE---DGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIV  182 (424)
Q Consensus       113 ----~~---~~~~~~~~~~i~~~~~~~---~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  182 (424)
                          ..   ...+.. ...|..+...+   +..+++..+..|.++...+.......    ........+.. ...+..+.
T Consensus        84 ~~~G~~i~~~l~l~~-~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r----~~G~~~i~L~~-~d~lv~~~  157 (312)
T 1suu_A           84 ASKGQNISELINLGD-QEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVK----SRGVIVIKLND-KDFVTSAE  157 (312)
T ss_dssp             ----CBGGGTSCCCT-TCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC--------CEECBCCCT-TCCEEEEE
T ss_pred             cCCCcChhhccCCCC-CCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccC----CCcEEEEecCC-CCEEEEEE
Confidence                11   111222 23455554332   46678888999999999886532211    11222223333 45566665


Q ss_pred             EEEcCceeEEEEEeCCCcEEEEecCCC---------ceeeeeecCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCC
Q 014475          183 IGYGGVSATIVSASEDRTCKVWSLLKG---------RLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAE  250 (424)
Q Consensus       183 ~~~~~~~~~l~~~~~d~~v~iwd~~~~---------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  250 (424)
                      .....  ..++..+.+|.+..+....-         .....+.....+..+..-+++..+++.+..|.....++..-
T Consensus       158 ~~~~~--~~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~~~d~vv~~~~v~~~~~l~~vt~~G~~kr~~~~e~  232 (312)
T 1suu_A          158 IVFKD--EKVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLKEGDLFVKVLSVKENPYLLIVSENGYGKRLNMSKI  232 (312)
T ss_dssp             EECTT--CEEEEEETTSEEEEEEGGGSCBCCTTBCCEECCCCCTTCCEEEEEECTTCSEEEEEETTSEEEEEEGGGS
T ss_pred             EeCCC--CEEEEEeCCCcEEEEEHHHccccCCCCCCeEeEEeCCCCEEEEEEEECCCCeEEEEECCCceEEEEHHHh
Confidence            55433  67888888999988887531         11222223455666666556667888899999998888654

>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}

Probab=90.48  E-value=7.6  Score=33.14  Aligned_cols=190  Identities=11%  Similarity=0.078  Sum_probs=102.0

Q ss_pred             CccccCCCCceeEEEEECCCCcee---------eeecCCCCeeEEEECCCCCEEEEecCCCcEEEEEccC---------c
Q 014475           51 QLREQPSASSGSILYWSWSKPQVE---------VKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVAS---------G  112 (424)
Q Consensus        51 ~~l~~~~~~~g~i~vwd~~~~~~~---------~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~---------~  112 (424)
                      ..+++.+.+ |.|+--.+..-+..         ......+.+..+........|+..+..|.++-+....         |
T Consensus         4 ~~~v~~T~~-G~iKr~~~~~~~~~~~~~~g~~~~~~ke~D~l~~~~~~~~~~~ll~fT~~G~~~~~~~~elp~~~~~a~G   82 (307)
T 1zi0_A            4 DVVVTLSHQ-GYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRGARG   82 (307)
T ss_dssp             EEEEEEETT-SEEEEEECC--------------------CCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCCCCSSSCC
T ss_pred             cEEEEEeCC-CEEEEeeHHHhhhhccCCCCceeeeeCCCCEEEEEEEECCCCEEEEEECCCEEEEEEhhHCcCCCCCCCC
Confidence            344555555 77766655432111         1112334555544444555666667788866665522         2


Q ss_pred             ceee---eeccccCCeEEEEEc---cCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEc
Q 014475          113 RLLK---KWHAHYRAVTCLVFS---EDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYG  186 (424)
Q Consensus       113 ~~~~---~~~~~~~~i~~~~~~---~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  186 (424)
                      ..+.   .+. ....|..+...   +++.+++..+.+|.++--.+.......    ........+..+ +.+..+.....
T Consensus        83 ~~i~~~l~l~-~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~----r~G~~~i~l~~~-d~lv~~~~~~~  156 (307)
T 1zi0_A           83 RPIVNLLPLE-QDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLR----TAGKVAIKLVDG-DELIGVDLTSG  156 (307)
T ss_dssp             EEGGGTSCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTCC----TTCEESSCCCTT-CCEEEEEEECT
T ss_pred             eEhhhccCCC-CCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhccc----cCCeEEEEECCC-CEEEEEEEeCC
Confidence            2211   122 23456655442   356678899999999998875432111    111112223333 45555554444


Q ss_pred             CceeEEEEEeCCCcEEEEecCCC---------ceeeeeecCcceeEEEECCCCCEEEEEeCCCcEEEEEcCC
Q 014475          187 GVSATIVSASEDRTCKVWSLLKG---------RLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNA  249 (424)
Q Consensus       187 ~~~~~l~~~~~d~~v~iwd~~~~---------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~  249 (424)
                      .  ..++..+.+|.+..++...-         .....+.....|..+...+++..+++.+..|..+-.++..
T Consensus       157 ~--~~i~l~T~~G~~irf~~~~v~~~gr~a~Gv~~i~L~~~d~Vv~~~~~~~~~~ll~~T~~G~~Kr~~~~e  226 (307)
T 1zi0_A          157 E--DEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAE  226 (307)
T ss_dssp             T--CEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCTTCCEEEEECCCSSCEEEEEETTSEEEEECGGG
T ss_pred             C--CEEEEECCCCcEEEEEHHHcCccCCCCCCeEeEEeCCCCEEEEEEEecCCCEEEEEEcCCceEEEEHHH
Confidence            3  56777888888888876421         1112233445666666555666788889999888887744

>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}

Probab=89.79  E-value=8  Score=32.38  Aligned_cols=205  Identities=13%  Similarity=0.058  Sum_probs=116.7

Q ss_pred             CCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEE
Q 014475          123 RAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCK  202 (424)
Q Consensus       123 ~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~  202 (424)
                      +.+..+.-......|+.-+..|.++--.+......      ...-+  +. ....|..+.. .+-+...++..+.+|.++
T Consensus        24 D~~~~~~~~~t~~~ll~fT~~G~v~~~~~~~lp~~------~~~~l--l~-~~e~i~~v~~-~~~~~~~~v~~T~~G~iK   93 (276)
T 3no0_A           24 APVVNILRVPFTEGLFLVSNRGRVYWIAGSQALQG------SKVSL--KS-REEKIVGAFI-REKFGNRLLLATKKGYVK   93 (276)
T ss_dssp             CCEEEEEEEETTSCEEEEETTSEEEEECSHHHHTS------EECCC--SS-TTCCEEEEEE-GGGSCSEEEEEETTSEEE
T ss_pred             CeEEEEEEECCCCEEEEEcCCCeEEEEEhhhCccC------ccccc--CC-CCCEEEEEEC-CcCCCCEEEEEeCCCEEE
Confidence            44555555444556666777888776554332110      00011  22 3455665543 320226899999999999


Q ss_pred             EEecCCCc------eeeeeecCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCC-cCceeeeeecccCcCeEEE
Q 014475          203 VWSLLKGR------LLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSS-YGMHIIGSLSDHSKAVTCL  275 (424)
Q Consensus       203 iwd~~~~~------~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~~~~~~~~~~~~i~~~  275 (424)
                      ...+..-.      ....+...+.+..+........++..+..|.+..+....-...... .+.. ...+.. ...|..+
T Consensus        94 r~~l~~~~~~~~G~~~i~lkegD~l~~~~~~~~~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv~-~i~L~~-~d~vv~~  171 (276)
T 3no0_A           94 KIPLAEFEYKAQGMPIIKLTEGDEVVSIASSVDETHILLFTKKGRVARFSVREVPPSTPGARGVQ-GIKLEK-NDETSGL  171 (276)
T ss_dssp             EEEGGGTTTCSTTEECSCCCTTCCEEEEEECCSSCEEEEEETTSEEEEEEGGGSCBCCTTCCCEE-CCCCCT-TCCEEEE
T ss_pred             EEEHHHhhhhcCCeEEEecCCCCEEEEEEEeCCCCEEEEEECCCEEEEEEhhhCCCcCCCCCCEE-EEccCC-CCEEEEE
Confidence            98875432      2222334456666666666778888999999988887553322211 1112 223333 3456655


Q ss_pred             EecC-CCEEEEeCCCCcEEEEeCCC-------CcEEEEEeccCCCeeEEEEEecCceeeeccCCCceee--ccCC
Q 014475          276 AYST-GDLLISGSEDGMVRVWDPIT-------HNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTS--SRRH  340 (424)
Q Consensus       276 ~~~~-~~~l~t~~~dg~i~iwd~~~-------~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~d~~i~i--w~~~  340 (424)
                      ...+ +..++..+..|.++...+..       ++-+..+ ...+.+-.+....+...++..+.+|.+..  ++..
T Consensus       172 ~~~~~~~~ll~~T~~G~~kr~~~~e~~~~~R~gkGv~~i-~~~~~lv~~~~~~~~~~i~~~t~~G~~ir~~~~~~  245 (276)
T 3no0_A          172 RIWNGEPYLLVITAKGRVKKISHEEIPKTNRGVKGTEVS-GTKDTLVDLIPIKEEVELLITTKNGKAFYDKINQK  245 (276)
T ss_dssp             EEESSCSEEEEEETTSCEEEEEGGGSCCCCTTCCCEECC-CSSSCEEEEEEESSEEEEEEEETTSCEEEEEEEGG
T ss_pred             EEeCCCCEEEEEeCCCcEEEeEHHHcccCCCCCcceEEE-cCCCcEEEEEEeCCCCEEEEEcCCCeEEEeeeCHH
Confidence            5444 77888889999998887643       2223333 23445555544444456666677777666  6554

>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1

Probab=89.42  E-value=9.6  Score=32.77  Aligned_cols=193  Identities=9%  Similarity=0.024  Sum_probs=103.1

Q ss_pred             CCCccccCCCCceeEEEEECCC----CceeeeecCCCCeeEEEECCCCCEEEEecCCCcEEEEEccC---------ccee
Q 014475           49 SSQLREQPSASSGSILYWSWSK----PQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVAS---------GRLL  115 (424)
Q Consensus        49 ~~~~l~~~~~~~g~i~vwd~~~----~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~---------~~~~  115 (424)
                      +...+++.+.+ |.|+--....    +.........+.+..+........|+..+..|.++-+....         |..+
T Consensus         4 ~e~~~v~lT~~-G~IKr~~~~~~~~~~~~~~~lke~D~l~~~~~~~t~d~ll~fT~~Gr~~~~~~~elp~~~r~a~G~~i   82 (323)
T 1wp5_A            4 SEDVIVTVTKD-GYVKRTSLRSYAASNGQDFAMKDTDRLLAMLEMNTKDVLLLFTNKGNYLYCPVHELPDIRWKDLGQHI   82 (323)
T ss_dssp             CCEEEEEEETT-CEEEEEEHHHHHHTTTCCCCCCTTCCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCTTSCCEEG
T ss_pred             CCcEEEEEeCC-CEEEEeEHHHhhhcCccccccCCCCEEEEEEEECCCCEEEEEECCCEEEEEEHHHCcCCCCCCCCcCh
Confidence            44445555555 7776554321    11111222344555555555556666667788876665522         2211


Q ss_pred             ee---eccccCCeEEEEEcc---CCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCce
Q 014475          116 KK---WHAHYRAVTCLVFSE---DGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVS  189 (424)
Q Consensus       116 ~~---~~~~~~~i~~~~~~~---~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  189 (424)
                      ..   +. ....|..+...+   ++.+++.++.+|.++--.+........   ........+... +.+..+......  
T Consensus        83 ~~~i~L~-~~e~Iv~~~~~~~~~~~~~ll~~T~~G~iKrt~l~e~~~~~r---~~G~~ai~l~e~-d~lv~~~~~~~~--  155 (323)
T 1wp5_A           83 ANIIPID-RDEEIIKAIPINDFELNGYFLFVTRNGMVKKTELKHYKAQRY---SKPLTGINLKND-DQVVDVHLTDGM--  155 (323)
T ss_dssp             GGTSCCC-TTCCEEEEEEESCTTSSCEEEEEETTSEEEEEEGGGGCCSCC---SSCEECSCCCTT-CCEEEEEEECSC--
T ss_pred             hhccCCC-CCCEEEEEEEecccCCCceEEEEeCCCeEEEeEHHHhhhccc---cCceEEEEeCCC-CEEEEEEEeCCC--
Confidence            11   22 223455544333   256789999999999998754322110   111111222322 455455444433  


Q ss_pred             eEEEEEeCCCcEEEEecCCCc---------eeeeeecCcceeEEEECCCCC-EEEEEeCCCcEEEEEcCC
Q 014475          190 ATIVSASEDRTCKVWSLLKGR---------LLRNIVFPSVIDAIALDPAEH-VFYAGSRDGSIYIAALNA  249 (424)
Q Consensus       190 ~~l~~~~~d~~v~iwd~~~~~---------~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~i~d~~~  249 (424)
                      ..++..+.+|.+..++...-.         ....+.....|.++...+++. .+++.+..|..+..++..
T Consensus       156 ~~i~l~T~~G~~irf~~~ev~~~gR~a~GV~~i~L~~~d~Vv~~~~~~~~~~~ll~vt~~G~gKr~~~~e  225 (323)
T 1wp5_A          156 NELFLVTHNGYALWFDESEVSIVGVRAAGVKGMNLKEGDYIVSGQLITSKDESIVVATQRGAVKKMKLTE  225 (323)
T ss_dssp             SEEEEEETTSEEEEEEGGGSCBCCSSCCCEECCCCCTTCCEEEEEEECCTTCEEEEEETTSEEEEEEGGG
T ss_pred             CEEEEEeCCCcEEEEEHHHCcccCCCCcCEEEEEeCCCCEEEEEEEEcCCCcEEEEEECCCceEEEEHHH
Confidence            567788888988888764311         111222344555554434444 788888888888877765

>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}

Probab=89.16  E-value=11  Score=33.27  Aligned_cols=250  Identities=11%  Similarity=0.060  Sum_probs=125.5

Q ss_pred             CeeEEEECCCCCEEEEecCCCcEEEEEccCcce-----------eeeecc-ccCCeEEEEEccCCcEEEEeeCCCcEEEE
Q 014475           82 PIKPIAANSHGTYIAGGGQSGDIYMWEVASGRL-----------LKKWHA-HYRAVTCLVFSEDGSFLISGSEDGCVRIW  149 (424)
Q Consensus        82 ~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~-----------~~~~~~-~~~~i~~~~~~~~~~~l~s~~~dg~i~iw  149 (424)
                      .+..++..  ....+.-..||.|+.|-....-.           ...+.. ....+..++.+.-..+.+.-..||.|..|
T Consensus        54 ~i~~i~~G--~~~~~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~~~~v~i~~G~~h~~al~~~G~v~~w  131 (389)
T 3kci_A           54 RPVQLIGG--EQTLFAVTADGKLYATGYGAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSW  131 (389)
T ss_dssp             CEEEEEEE--TTEEEEEETTSCEEEEECCGGGTTSSSSSCCEEEEEECGGGTTSCEEEEEECTTCSEEEEEETTSCEEEE
T ss_pred             ceEEEEeC--CCeEEEEcCCCcEEEEECCCCCCCCCCCcCCccCCEEcccccCCceeEEEECcCCCeEEEEcCCCCEEEE
Confidence            34444432  34444556789999996543210           111111 22345566776666677777889999999


Q ss_pred             eCCcccchhcccccccceEEeecC-CcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCC-c----------eeeeee-
Q 014475          150 SLLTVFEECESQRASHLYLHSFTG-HTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKG-R----------LLRNIV-  216 (424)
Q Consensus       150 d~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~-~----------~~~~~~-  216 (424)
                      -.....+..............+.. ....|..++..  .  .+.+....+|.|..|-.... +          ....+. 
T Consensus       132 G~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~va~G--~--~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~  207 (389)
T 3kci_A          132 GEAEDGKLGHGNRSPCDRPRVIESLRGIEVVDVAAG--G--AHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEA  207 (389)
T ss_dssp             ECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEEC--S--SEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGG
T ss_pred             eCCCCCcCCCCCCccCcCCeEecccCCCeEEEEEeC--c--CeEEEEeCCCeEEEeCCCCCCCcCCCCCcccccceEecc
Confidence            764422111100000001111111 12245555443  3  45666778999999975421 1          011111 


Q ss_pred             -cCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCc--Cceeeeeecc-cCcCeEEEEecCCCEEEEeCCCCcE
Q 014475          217 -FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSY--GMHIIGSLSD-HSKAVTCLAYSTGDLLISGSEDGMV  292 (424)
Q Consensus       217 -~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--~~~~~~~~~~-~~~~i~~~~~~~~~~l~t~~~dg~i  292 (424)
                       ....+..++........++-..+|.|+.|-...........  .......+.. ....|..++.. ..+.+.-..||.|
T Consensus       208 ~~~~~v~~ia~G~g~~~t~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~v~~G-~~hs~alt~~G~v  286 (389)
T 3kci_A          208 LQGHRVVDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLTGLGVVKVECG-SQFSVALTKSGAV  286 (389)
T ss_dssp             GTTSCEEEEEECCSSCEEEEEETTTEEEEEECCGGGTTSSSSCCCEEEEEECGGGTTSCEEEEEEE-TTEEEEEETTSCE
T ss_pred             cCCCeEEEEEEcCCCcEEEEEccCCEEEEEeCCCCCCCCCCCCCCccccEEecccCCCcEEEEeCC-CCEEEEEeCCCeE
Confidence             12346666655444566667789999999865432211100  0011111111 12346666554 3444445679999


Q ss_pred             EEEeCCCCc-----------EEEEEec-cCCCeeEEEEEecCceeeeccCCCceeeccCC
Q 014475          293 RVWDPITHN-----------IVRMFRL-AKGPVNNILVVRRPLYLNLGSFSNPHTSSRRH  340 (424)
Q Consensus       293 ~iwd~~~~~-----------~~~~~~~-~~~~v~~l~~s~~~~~l~~~~~d~~i~iw~~~  340 (424)
                      ..|-....-           ....+.. ....|..++.-.  ...+.-..||.|..|-..
T Consensus       287 ~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~v~~ia~G~--~h~~al~~~G~v~~wG~n  344 (389)
T 3kci_A          287 YTWGKGDYHRLGHGSDDHVRRPRQVQGLQGKKVIAIATGS--LHCVCCTEDGEVYTWGDN  344 (389)
T ss_dssp             EEEECCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEEECS--SEEEEEETTCCEEEEECC
T ss_pred             EEEeCCCCCCCCCCCCccccCCeEeccCCCCCEEEEEecc--CeEEEECCCCCEEEeeCC
Confidence            999754311           1111211 123455555433  334445689999999765

>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}

Probab=89.02  E-value=11  Score=33.04  Aligned_cols=196  Identities=10%  Similarity=0.044  Sum_probs=110.4

Q ss_pred             eecCCCccccCCCCceeEEEEECCC---------CceeeeecCCCCeeEEEECCCCCEEEEecCCCcEEEEEccC-----
Q 014475           46 FLASSQLREQPSASSGSILYWSWSK---------PQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVAS-----  111 (424)
Q Consensus        46 ~~~~~~~l~~~~~~~g~i~vwd~~~---------~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~-----  111 (424)
                      +-|+...+++.+.+ |.|+--.+..         +.........+.+..+........|+..+..|.++-+....     
T Consensus         3 lI~~e~~~v~lT~~-GyIKr~~l~~y~~~~r~g~g~~~~~lke~D~l~~~~~~~t~d~ll~fT~~G~~~~~~~~eip~~~   81 (370)
T 3l6v_A            3 LIAPEDVVVTLSHA-GYAKRQPVSAYRAQRRGGRGRSAASTKEEDFIDQLWLVNTHDTLLTFTSSGKVFWLPVHQLPEAG   81 (370)
T ss_dssp             CCCCCCEEEEEESS-CEEEEEEHHHHHHTCCCCCCSEEEECSCCCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCC
T ss_pred             cccCCCEEEEEeCC-CEEEEeeHHHhhhhccCCCCceecccCCCCEEEEEEEecCCCEEEEEeCCCeEEEEEHHHCcCCC
Confidence            44666777777777 8888754321         12223334456666666666666677677788877665422     


Q ss_pred             ----cceeee---eccccCCeEEEEEcc---CCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEE
Q 014475          112 ----GRLLKK---WHAHYRAVTCLVFSE---DGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDI  181 (424)
Q Consensus       112 ----~~~~~~---~~~~~~~i~~~~~~~---~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  181 (424)
                          |..+..   +. ....|.++...+   ++.+|+.++..|.++.-.+.......    ........+.. ...+..+
T Consensus        82 r~a~G~~i~~ll~L~-~~e~Iv~~~~~~~~~~~~~ll~~T~~G~vKrt~l~e~~~~~----~~G~~ai~L~~-~d~lv~v  155 (370)
T 3l6v_A           82 SNARGRPIINWIPLE-SGERVQAVLPVREYADNRYVFMATRNGTVKKTPLSEFAFRL----ARGKIAINLDE-GDALVGV  155 (370)
T ss_dssp             TTSCCEEGGGSCCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCSCC----TTCEESSCCCT-TCCEEEE
T ss_pred             cccCCcCHhhccCCC-CCCEEEEEEEeccCCCCcEEEEEeCCCeEEEeEHHHhhccc----CCceEEEEeCC-CCEEEEE
Confidence                222211   22 234566554432   45689999999999999875533211    11111222332 3445455


Q ss_pred             EEEEcCceeEEEEEeCCCcEEEEecCCC---------ceeeeeecCcceeEEEECC------------------------
Q 014475          182 VIGYGGVSATIVSASEDRTCKVWSLLKG---------RLLRNIVFPSVIDAIALDP------------------------  228 (424)
Q Consensus       182 ~~~~~~~~~~l~~~~~d~~v~iwd~~~~---------~~~~~~~~~~~i~~~~~~~------------------------  228 (424)
                      ......  ..++..+..|.+..++...-         -....+.....|.++...+                        
T Consensus       156 ~~~~~~--~~i~l~T~~G~~irf~~~~v~~~gR~a~GV~~i~L~~~d~Vv~~~~~~~~~~~~~~~~~~~~~~~~~t~~g~  233 (370)
T 3l6v_A          156 ALTDGD--RDVLLFASNGKTVRFGESTVRSMGRTATGVRGIRLAKGEEVVSLIVSERAGGVEDEVEDESAEEVVETTDGA  233 (370)
T ss_dssp             EEECSC--CEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCTTCCEEEEEEECCC----------------------
T ss_pred             EEeCCC--ceEEEEeCCCeEEEEEccccCccCCCCCCeeeEEeCCCCEEEEEEEeccccccccccccccccccccccccc
Confidence            444433  56777888888888875421         1111222334455444433                        


Q ss_pred             -----------CCCEEEEEeCCCcEEEEEcCCC
Q 014475          229 -----------AEHVFYAGSRDGSIYIAALNAE  250 (424)
Q Consensus       229 -----------~~~~l~~~~~dg~i~i~d~~~~  250 (424)
                                 .+..+++.+..|..+...+..-
T Consensus       234 ~~~~~~~~~~~~~~~il~vTe~G~gKrt~~~e~  266 (370)
T 3l6v_A          234 EPAVIDVADNGDVAYILTATENGYGKRTPLAEY  266 (370)
T ss_dssp             -------------CEEEEEETTSEEEEEEGGGS
T ss_pred             cccccccccccCCceEEEeeCCCCEEEEEHHHh
Confidence                       3457888888888888877653

>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B

Probab=87.46  E-value=26  Score=35.37  Aligned_cols=37  Identities=19%  Similarity=0.231  Sum_probs=31.4

Q ss_pred             CeEEEEecC-CCEEEEeCCCCcEEEEeCCCCcEEEEEe
Q 014475          271 AVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFR  307 (424)
Q Consensus       271 ~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~~~~~~  307 (424)
                      .+.+++..+ ..++++-+.|+++|+|++.+++++.+..
T Consensus       237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~d  274 (950)
T 4gq2_M          237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE  274 (950)
T ss_dssp             CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred             eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeec
Confidence            456666666 7799999999999999999999998765

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=85.91  E-value=17  Score=31.63  Aligned_cols=156  Identities=14%  Similarity=0.085  Sum_probs=83.0

Q ss_pred             cccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEe----ecCCcCceeEEEEEEc--CceeEEE
Q 014475          120 AHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHS----FTGHTLRITDIVIGYG--GVSATIV  193 (424)
Q Consensus       120 ~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~----~~~~~~~i~~~~~~~~--~~~~~l~  193 (424)
                      ..-.....|+|.|++.++++--..|.|++++..++..         ..+..    ..........|+++|+  .++.+.+
T Consensus        29 ~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~---------~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv   99 (347)
T 3das_A           29 TGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRK---------TELGEVPGVSPSGEGGLLGIALSPDYASDHMVYA   99 (347)
T ss_dssp             CCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCE---------EEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEE
T ss_pred             cCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcE---------eeecccCceeecCCCCceeeEeccccccCCEEEE
Confidence            3445678999999998776655489999998643211         11111    1234566788999885  1113333


Q ss_pred             EE--eCCCcEEEEecCCC----------cee-eeee--cCcceeEEEECCCCCEEEEEeC-------------CCcEEEE
Q 014475          194 SA--SEDRTCKVWSLLKG----------RLL-RNIV--FPSVIDAIALDPAEHVFYAGSR-------------DGSIYIA  245 (424)
Q Consensus       194 ~~--~~d~~v~iwd~~~~----------~~~-~~~~--~~~~i~~~~~~~~~~~l~~~~~-------------dg~i~i~  245 (424)
                      +-  ..++.|.-|.+..+          +.+ ..+.  .......+.|.|+|.++++.+.             .|.|.-.
T Consensus       100 ~yt~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi  179 (347)
T 3das_A          100 YFTSASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRM  179 (347)
T ss_dssp             EEECSSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEE
T ss_pred             EEecCCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEE
Confidence            32  23456666665541          111 1121  1234567999999987766442             3555555


Q ss_pred             EcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEe
Q 014475          246 ALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISG  286 (424)
Q Consensus       246 d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~  286 (424)
                      +.+...+...++....+ ...+|. ....++|+| +.++++-
T Consensus       180 ~~dG~ip~~nPf~~~~i-~a~G~R-Np~Gla~dp~G~L~~~d  219 (347)
T 3das_A          180 TPDGEPAPGNPFPGSPV-YSYGHR-NVQGLAWDDKQRLFASE  219 (347)
T ss_dssp             CTTSSBCTTCSSTTCCE-EEBCCS-BCCEEEECTTCCEEEEE
T ss_pred             eCCCCccCCCCCCCCeE-EeeCCC-CcceEEECCCCCEEEEe
Confidence            55433211111111111 122443 456788988 6655543

>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B

Probab=85.77  E-value=32  Score=34.73  Aligned_cols=148  Identities=15%  Similarity=0.171  Sum_probs=79.1

Q ss_pred             CCCcEEEEecCCCc-------eeeeeecCcce--eEEEEC--CC--CCEEEEEeCCCcEEEEEcCCCCC----CCCCcCc
Q 014475          197 EDRTCKVWSLLKGR-------LLRNIVFPSVI--DAIALD--PA--EHVFYAGSRDGSIYIAALNAESP----STSSYGM  259 (424)
Q Consensus       197 ~d~~v~iwd~~~~~-------~~~~~~~~~~i--~~~~~~--~~--~~~l~~~~~dg~i~i~d~~~~~~----~~~~~~~  259 (424)
                      .||++.+-++.-.+       ..-.+..+.+|  .+++|.  ++  .-.+.+-+..|.++-..++..--    ......+
T Consensus        80 ~~~~l~~~~~~~~~~~~~~~~~~l~~~Fp~~i~p~~v~f~d~~~~~~L~v~vit~~~~Ly~l~l~~~~f~~~~~~~~~~W  159 (950)
T 4gq2_M           80 QNRTLTIFDVSLNSKKEPLSKFNVKIHFPSNVMKDGVAFSFSEHSDTTIIYAITHARVLYYIRLSKTWFQLPDARLDDDW  159 (950)
T ss_dssp             TTTEEEEEECCCSCCSSCCCCEEEEEECSSCEEEEEEEEEEETGGGEEEEEEEETTCCEEEEEECTHHHHSTTCCCCTTS
T ss_pred             cCCeEEEEEeeccCCccccCCeEEEEECCCcccCCceEEeccCCCCeEEEEEEcCCCCEEEEEECHHHccCccccccccc
Confidence            45666666554211       12233445444  356664  33  33456678888888887764210    0011112


Q ss_pred             eeeeeec--ccCcCeEEEEecCCCEEEEeCCCCcEEE-EeCCCCcE-------------EEE-E-----ec---cCCCee
Q 014475          260 HIIGSLS--DHSKAVTCLAYSTGDLLISGSEDGMVRV-WDPITHNI-------------VRM-F-----RL---AKGPVN  314 (424)
Q Consensus       260 ~~~~~~~--~~~~~i~~~~~~~~~~l~t~~~dg~i~i-wd~~~~~~-------------~~~-~-----~~---~~~~v~  314 (424)
                      .......  ....+..-.+.++...+++-.+.|-+++ ++-..+..             ++. +     +.   ....+.
T Consensus       160 ~~~~~p~~f~~r~p~~l~av~~~~l~Vsl~dGgLlrl~r~~~~~~~~~~~f~~~s~~~sl~~l~~~~~~~~~~~~~~~~~  239 (950)
T 4gq2_M          160 CLCYRPISFLNQKPDLMAAISTSEICVSFFNGGLTKIILNPKDASHYEQHIDDSSYLFSLKKYLSLQAFKADYRSPNTII  239 (950)
T ss_dssp             EEEECCGGGTTSCEEEEEECSSSEEEEEETTSCEEEEEEETTTTEEEEEEECCCCCCCBCC-------CCSSCCCTTCEE
T ss_pred             cccccCcCccCCCceEEEEEcCCeEEEEECCCCEEEEEecCCCCCcceeeecCCcHHHhhhhhcccccCCCCCCCcceEE
Confidence            1111111  1223444455566777777766666776 33332211             111 0     11   112466


Q ss_pred             EEEEEecCceeeeccCCCceeeccCCCCCC
Q 014475          315 NILVVRRPLYLNLGSFSNPHTSSRRHGSQL  344 (424)
Q Consensus       315 ~l~~s~~~~~l~~~~~d~~i~iw~~~~~~~  344 (424)
                      +++..++..++++-+.|+++|+|++.++++
T Consensus       240 ~~~~~~~~~~lftl~~D~~LRiWsl~t~~~  269 (950)
T 4gq2_M          240 SMIFLSTYNVLVMLSLDYKLKVLDLSTNQC  269 (950)
T ss_dssp             EEEEETTTTEEEEEETTCEEEEEETTTTEE
T ss_pred             EEeecCCCcEEEEEECCCEEEEEECCCCCe
Confidence            777778888999999999999999988765

>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}

Probab=84.58  E-value=31  Score=33.49  Aligned_cols=246  Identities=9%  Similarity=0.065  Sum_probs=118.9

Q ss_pred             eeEEE-ECCCCCEEEEec----CC-CcEEEEEccCcceeee-ec-cccC------CeEEEEEccCCcEEEEee-------
Q 014475           83 IKPIA-ANSHGTYIAGGG----QS-GDIYMWEVASGRLLKK-WH-AHYR------AVTCLVFSEDGSFLISGS-------  141 (424)
Q Consensus        83 v~~~~-~s~~~~~l~~~~----~d-g~v~iwd~~~~~~~~~-~~-~~~~------~i~~~~~~~~~~~l~s~~-------  141 (424)
                      ...+. ++|++++++.+-    .| ..++++|+.+++.+.. +. .-..      ....++|..++..+++..       
T Consensus       131 ~~g~~~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~~~~~~~k~~~~~~~~~~~~~W~d~~~~~~~~~~~~~~~~  210 (711)
T 4hvt_A          131 YRGVSNCFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKNGFEPITNSGKLLEGKFTYPTWINKDTIIFNLVLHKNEIT  210 (711)
T ss_dssp             EEEEEECSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTTCSCCBCTTCCBCCEETCCEEEEETTEEEECCCCSTTCBC
T ss_pred             EeceeecCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCCCcccccccccccccccceeeEECCCEEEEEeCCCCCCcC
Confidence            34455 889999887652    22 3599999999977632 22 0000      113457874444444321       


Q ss_pred             ---CCCcEEEEeCCcccchhcccccccceEEeecCCcCce-eEEEEEEcCcee---EEEEEeCC---CcEEEEecCC--C
Q 014475          142 ---EDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRI-TDIVIGYGGVSA---TIVSASED---RTCKVWSLLK--G  209 (424)
Q Consensus       142 ---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i-~~~~~~~~~~~~---~l~~~~~d---~~v~iwd~~~--~  209 (424)
                         ....|+.|.+-+...       ..  ...+.+....+ .....+.++...   .+++.+.+   ..+.+.|...  +
T Consensus       211 ~~~~~~~v~~~~~Gt~~~-------~~--~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  281 (711)
T 4hvt_A          211 SSLYPNSLYIWKRGESIE-------KA--KKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKNL  281 (711)
T ss_dssp             TTSSBCEEEEEETTSCGG-------GC--EEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSSC
T ss_pred             cCCCCCEEEEEECCCChH-------HC--eEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCCC
Confidence               124588888755221       11  12222222222 122333444211   34443322   3455666543  3


Q ss_pred             ceeeeeecCcceeEEEECCCCCEEEEE----------eCCCcEEEEEcCCCCCCC-CCcCceeeeeecccCcCeEEEEec
Q 014475          210 RLLRNIVFPSVIDAIALDPAEHVFYAG----------SRDGSIYIAALNAESPST-SSYGMHIIGSLSDHSKAVTCLAYS  278 (424)
Q Consensus       210 ~~~~~~~~~~~i~~~~~~~~~~~l~~~----------~~dg~i~i~d~~~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~~  278 (424)
                      + ...+..+.... +..+.++.+++..          ...+.|...++....... ....++.+. .......+..+.+.
T Consensus       282 ~-~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~  358 (711)
T 4hvt_A          282 K-LQKINMPSDAT-LQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILF-TPTANEVFNFISTT  358 (711)
T ss_dssp             E-EEECCSCTTCE-EEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEE-CCCTTEEEEEEEEC
T ss_pred             c-ceEeecCCcce-EeeeECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEE-CCCCCCeEEEEEEE
Confidence            2 22233222222 2233455544422          246778899987642100 000112111 12234567788888


Q ss_pred             CCCEEEEeCCCCc--EEEEeCCCCc-EEEE-Eecc-CCCeeEEEEEecCceee-ecc---CCCceeeccCC
Q 014475          279 TGDLLISGSEDGM--VRVWDPITHN-IVRM-FRLA-KGPVNNILVVRRPLYLN-LGS---FSNPHTSSRRH  340 (424)
Q Consensus       279 ~~~~l~t~~~dg~--i~iwd~~~~~-~~~~-~~~~-~~~v~~l~~s~~~~~l~-~~~---~d~~i~iw~~~  340 (424)
                      .+.++++...++.  |.++|+.+++ .... +... .+.+.....++++..++ +.+   .-+.+..++..
T Consensus       359 ~~~l~~~~~~~~~~~l~~~~~~~g~~~~~~~i~lp~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~  429 (711)
T 4hvt_A          359 KDRVFLATYDNVVAKVVTFTLENEQWTKPVVLKLPYQNAIFGMSSYEEEEEALITIENSIVPPTIYLWVKT  429 (711)
T ss_dssp             SSCEEEEEEETTEEEEEEECEETTEECCCEEECCCSTTCEEEEECCTTCSCEEEEEECSSSCCEEEEECTT
T ss_pred             CCEEEEEEEECCEEEEEEEECCCCceEEEeccCCCCCeEEEEEeecCcCCEEEEEEecCCCCCEEEEEeCC
Confidence            7778888777765  6777776664 2333 3322 24566666666665443 222   22345555543

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=84.47  E-value=13  Score=33.80  Aligned_cols=111  Identities=10%  Similarity=0.005  Sum_probs=61.3

Q ss_pred             cceeEEEECCCCC-EEEEEeCCCcEEEEEcCCCCCCCCCcCceeee-eec-----ccCcCeEEEEecCC-----CEEEEe
Q 014475          219 SVIDAIALDPAEH-VFYAGSRDGSIYIAALNAESPSTSSYGMHIIG-SLS-----DHSKAVTCLAYSTG-----DLLISG  286 (424)
Q Consensus       219 ~~i~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~-~~~-----~~~~~i~~~~~~~~-----~~l~t~  286 (424)
                      .....|+|.|++. .++++...|.|++++.........   ..-+. .+.     ........|+++|+     .+.++-
T Consensus        14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~---~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~y   90 (463)
T 2wg3_C           14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEP---YLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSY   90 (463)
T ss_dssp             SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSC---SEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEE
T ss_pred             CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeee---ecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEE
Confidence            4567899999986 566677889999997543211000   00010 011     12466789999982     333332


Q ss_pred             CC--C----------CcEEEEeCCC----------CcEEEEEe--ccCCCeeEEEEEecCceeeeccCCC
Q 014475          287 SE--D----------GMVRVWDPIT----------HNIVRMFR--LAKGPVNNILVVRRPLYLNLGSFSN  332 (424)
Q Consensus       287 ~~--d----------g~i~iwd~~~----------~~~~~~~~--~~~~~v~~l~~s~~~~~l~~~~~d~  332 (424)
                      +.  +          ..|.-|.+..          .+.+..+.  .....-..|.|.|||.+.++.++.+
T Consensus        91 t~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd~~  160 (463)
T 2wg3_C           91 TTNQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGDGM  160 (463)
T ss_dssp             EECCCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECCTT
T ss_pred             eCCCCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCCCC
Confidence            21  1          1344455432          23333433  1223568999999997776655443

>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}

Probab=83.28  E-value=29  Score=32.72  Aligned_cols=58  Identities=24%  Similarity=0.228  Sum_probs=42.5

Q ss_pred             CeEEEEecC-CCEEEEeCCC------------CcEEEEeCCCCcEEEEEeccC-CCeeEEEEEecCceeeec
Q 014475          271 AVTCLAYST-GDLLISGSED------------GMVRVWDPITHNIVRMFRLAK-GPVNNILVVRRPLYLNLG  328 (424)
Q Consensus       271 ~i~~~~~~~-~~~l~t~~~d------------g~i~iwd~~~~~~~~~~~~~~-~~v~~l~~s~~~~~l~~~  328 (424)
                      ..-.|+|+| +++++.-..+            ..+.+.+..+++..+-+.++. .+++.++|+||++.|.+.
T Consensus       477 ~PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvn  548 (592)
T 3zwu_A          477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG  548 (592)
T ss_dssp             CEEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred             CCcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEE
Confidence            346689999 8877765432            246667777888777666654 589999999999888664

>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}

Probab=83.21  E-value=19  Score=30.07  Aligned_cols=211  Identities=10%  Similarity=-0.014  Sum_probs=116.4

Q ss_pred             eeCCCCCCCceEEecceeecCCCccccCCCCceeEEE---EECCCCce-eeeecCCCCeeEEEECC--CCCEEEEecCCC
Q 014475           29 YKSCASPPHGLACVGQRFLASSQLREQPSASSGSILY---WSWSKPQV-EVKSLPAEPIKPIAANS--HGTYIAGGGQSG  102 (424)
Q Consensus        29 ~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~v---wd~~~~~~-~~~~~~~~~v~~~~~s~--~~~~l~~~~~dg  102 (424)
                      .++|....+.+..+.  .......++.-+.. |.++-   |++..... .+ ....+.|..+.. +  +..+++..+.+|
T Consensus        16 ~~g~~~~gD~~~~~~--~~~t~~~ll~fT~~-G~v~~~~~~~lp~~~~~~l-l~~~e~i~~v~~-~~~~~~~~v~~T~~G   90 (276)
T 3no0_A           16 VEELPLEKAPVVNIL--RVPFTEGLFLVSNR-GRVYWIAGSQALQGSKVSL-KSREEKIVGAFI-REKFGNRLLLATKKG   90 (276)
T ss_dssp             GGGCCSSCCCEEEEE--EEETTSCEEEEETT-SEEEEECSHHHHTSEECCC-SSTTCCEEEEEE-GGGSCSEEEEEETTS
T ss_pred             ccCCCCCCCeEEEEE--EECCCCEEEEEcCC-CeEEEEEhhhCccCccccc-CCCCCEEEEEEC-CcCCCCEEEEEeCCC
Confidence            334433344555444  33444444444444 65554   33322111 12 334566777654 4  467899999999


Q ss_pred             cEEEEEccCcc------eeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcC
Q 014475          103 DIYMWEVASGR------LLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTL  176 (424)
Q Consensus       103 ~v~iwd~~~~~------~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (424)
                      .++-..+..-.      ....++. .+.+..+........++..+..|.+..+...........  ........+.. ..
T Consensus        91 ~iKr~~l~~~~~~~~G~~~i~lke-gD~l~~~~~~~~~~~ill~T~~G~~~r~~~~eip~~gR~--a~Gv~~i~L~~-~d  166 (276)
T 3no0_A           91 YVKKIPLAEFEYKAQGMPIIKLTE-GDEVVSIASSVDETHILLFTKKGRVARFSVREVPPSTPG--ARGVQGIKLEK-ND  166 (276)
T ss_dssp             EEEEEEGGGTTTCSTTEECSCCCT-TCCEEEEEECCSSCEEEEEETTSEEEEEEGGGSCBCCTT--CCCEECCCCCT-TC
T ss_pred             EEEEEEHHHhhhhcCCeEEEecCC-CCEEEEEEEeCCCCEEEEEECCCEEEEEEhhhCCCcCCC--CCCEEEEccCC-CC
Confidence            99999876532      1222332 345666655555667888899999988887553321111  11111122332 34


Q ss_pred             ceeEEEEEEcCceeEEEEEeCCCcEEEEecCCC-------ceeeeeecCcceeEEEECCCCCEEEEEeCCCcEEE--EEc
Q 014475          177 RITDIVIGYGGVSATIVSASEDRTCKVWSLLKG-------RLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYI--AAL  247 (424)
Q Consensus       177 ~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~-------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i--~d~  247 (424)
                      .|..+....++  ..++..+..|.++...+..-       +-+..+...+.+..+.....+..++..+.+|.+..  ++.
T Consensus       167 ~vv~~~~~~~~--~~ll~~T~~G~~kr~~~~e~~~~~R~gkGv~~i~~~~~lv~~~~~~~~~~i~~~t~~G~~ir~~~~~  244 (276)
T 3no0_A          167 ETSGLRIWNGE--PYLLVITAKGRVKKISHEEIPKTNRGVKGTEVSGTKDTLVDLIPIKEEVELLITTKNGKAFYDKINQ  244 (276)
T ss_dssp             CEEEEEEESSC--SEEEEEETTSCEEEEEGGGSCCCCTTCCCEECCCSSSCEEEEEEESSEEEEEEEETTSCEEEEEEEG
T ss_pred             EEEEEEEeCCC--CEEEEEeCCCcEEEeEHHHcccCCCCCcceEEEcCCCcEEEEEEeCCCCEEEEEcCCCeEEEeeeCH
Confidence            56555554444  67888899999998876432       22222233344444433334456777788888877  877


Q ss_pred             CCC
Q 014475          248 NAE  250 (424)
Q Consensus       248 ~~~  250 (424)
                      ..-
T Consensus       245 ~~i  247 (276)
T 3no0_A          245 KDI  247 (276)
T ss_dssp             GGS
T ss_pred             HHC
Confidence            653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	424
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	6e-24
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	3e-12
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	6e-12
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	5e-19
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	2e-07
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	3e-04
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	7e-18
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	8e-18
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	2e-16
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	1e-06
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	1e-05
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	3e-16
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	5e-14
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	3e-12
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	1e-11
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	1e-10
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	2e-13
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	2e-05
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	2e-05
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	5e-05
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	2e-12
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	4e-11
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	6e-10
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	1e-09
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	1e-09
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	2e-08
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	2e-12
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	2e-08
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	4e-07
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	2e-05
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	2e-11
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	7e-09
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	1e-06
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	5e-06
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	1e-05
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	0.003
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	2e-10
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	4e-09
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	1e-07
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	3e-07
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	1e-06
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	5e-06
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	1e-04
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	5e-09
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	1e-08
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	2e-07
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	2e-06
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	3e-06
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	1e-08
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	3e-07
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	5e-07
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	3e-05
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	5e-05
d1mdah_	368	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	2e-08
d1mdah_	368	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	2e-07
d1mdah_	368	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	4e-04
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	3e-08
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	9e-07
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	2e-06
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	3e-05
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	1e-04
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	3e-04
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	4e-08
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	2e-07
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	5e-06
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	9e-06
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	3e-04
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	6e-08
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	8e-07
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	1e-07
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	2e-07
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	5e-06
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	0.001
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	1e-07
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	2e-05
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	6e-05
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	0.004
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	2e-06
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	3e-05
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	8e-06
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	1e-05
d1ri6a_	333	b.69.11.1 (A:) Putative isomerase YbhE {Escherichi	0.001
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	0.002

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 99.4 bits (246), Expect = 6e-24
 Identities = 59/302 (19%), Positives = 114/302 (37%), Gaps = 24/302 (7%)

Query: 4   LIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSI 63
           ++ S+S  D  I  WD E+G  +   K        ++      L +S   +         
Sbjct: 31  VMVSAS-EDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQ 89

Query: 64  LYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYR 123
            +           ++ +  I P     +G +I    +   I MWEV +G  +K +  H  
Sbjct: 90  GFECIRTMHGHDHNVSSVSIMP-----NGDHIVSASRDKTIKMWEVQTGYCVKTFTGHRE 144

Query: 124 AVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLH-------SFTGHTL 176
            V  +  ++DG+ + S S D  VR+W + T   + E +   H+          S++  + 
Sbjct: 145 WVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISE 204

Query: 177 RITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYA 235
                    G     ++S S D+T K+W +  G  L  +V   + +  +          +
Sbjct: 205 ATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILS 264

Query: 236 GSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYS-TGDLLISGSEDGMVRV 294
            + D ++ +                 + +L+ H   VT L +  T   +++GS D  V+V
Sbjct: 265 CADDKTLRVWDYK---------NKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKV 315

Query: 295 WD 296
           W+
Sbjct: 316 WE 317

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 64.8 bits (156), Expect = 3e-12
 Identities = 41/226 (18%), Positives = 73/226 (32%), Gaps = 22/226 (9%)

Query: 120 AHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRIT 179
            H   VT ++F    S ++S SED  +++W              +  +  +  GHT  + 
Sbjct: 15  GHRSPVTRVIFHPVFSVMVSASEDATIKVWDY-----------ETGDFERTLKGHTDSVQ 63

Query: 180 DIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRD 239
           DI   + G      SA        +   +     +    +V       P      + SRD
Sbjct: 64  DISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSI-MPNGDHIVSASRD 122

Query: 240 GSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYS-TGDLLISGSEDGMVRVWDPI 298
            +I +  +            + + + + H + V  +  +  G L+ S S D  VRVW   
Sbjct: 123 KTIKMWEVQ---------TGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVA 173

Query: 299 THNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGSQL 344
           T       R  +  V  I       Y ++   +   T         
Sbjct: 174 TKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPF 219

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 64.0 bits (154), Expect = 6e-12
 Identities = 44/277 (15%), Positives = 89/277 (32%), Gaps = 28/277 (10%)

Query: 68  WSKPQVEVKSLPA--EPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAV 125
           W     E  +L     P+  +  +   + +    +   I +W+  +G   +    H  +V
Sbjct: 3   WIPRPPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSV 62

Query: 126 TCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGY 185
             + F   G  L S S D  +++W               H                    
Sbjct: 63  QDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPN---------- 112

Query: 186 GGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPS-VIDAIALDPAEHVFYAGSRDGSIYI 244
                 IVSAS D+T K+W +  G  ++        +  +  +    +  + S D ++ +
Sbjct: 113 ---GDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRV 169

Query: 245 AALNAESP------------STSSYGMHIIGSLSDHSKAVTCLAYSTGDLLISGSEDGMV 292
             +  +                S        S+S+ + + T  +   G  L+SGS D  +
Sbjct: 170 WVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTI 229

Query: 293 RVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGS 329
           ++WD  T   +         V  +L      ++   +
Sbjct: 230 KMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCA 266

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 86.1 bits (211), Expect = 5e-19
 Identities = 35/242 (14%), Positives = 82/242 (33%), Gaps = 33/242 (13%)

Query: 104 IYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRA 163
           +++    +G+      AH   +  +       F +S S DG +++W    +  E    ++
Sbjct: 2   VFIATANAGK------AHDADIFSVSACNS--FTVSCSGDGYLKVWDNKLLDNENPKDKS 53

Query: 164 SHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGR-----------LL 212
              ++H    H + +   +         + + S       + + +             LL
Sbjct: 54  YSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLL 113

Query: 213 RNIVFPSVIDAIALDPAE-----HVFYAGSRDGSIYIAALNAESPSTSSYGMHI------ 261
            + +      A+    +      H   A    G+ YI   +  +  ++S  ++       
Sbjct: 114 DSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLEL 173

Query: 262 ---IGSLSDHSKAVTCLAYSTGDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILV 318
              + S    S+  T +  S   L+ +G  +G V++ +  T   +  F      +NN   
Sbjct: 174 QGTVESPMTPSQFATSVDISERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNS 233

Query: 319 VR 320
           +R
Sbjct: 234 IR 235

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 50.2 bits (118), Expect = 2e-07
 Identities = 39/263 (14%), Positives = 71/263 (26%), Gaps = 40/263 (15%)

Query: 89  NSHGTYIAGGGQSGDIYMWEVASGRLLKKW----------HAHYRAVTCLVFSEDG---- 134
                 +A    SGD+  + +      KK                +   L +        
Sbjct: 76  AFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLL 135

Query: 135 -SFLISGSEDGCVRIWSLLTVFEECESQRASHLY-------LHSFTGHTLRITDIVIGYG 186
              L++    G   IW      +E  S   +          + S    +   T + I   
Sbjct: 136 SHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISER 195

Query: 187 GVSATIVSASEDRTCKVWS-------LLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRD 239
           G    I +   + T ++                  I   + I ++   P   +       
Sbjct: 196 G---LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDS 252

Query: 240 GSIYIAAL-------NAESPSTSSYGMHIIGSLSDHSKAVTCLAYS-TGDLLISGSEDGM 291
            S     L          S S  ++          HS  V  L+++ +G+ L S   DG 
Sbjct: 253 NSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGK 312

Query: 292 VRVWDPITHNIVRMFRLAKGPVN 314
           +R WD  T   +    +    + 
Sbjct: 313 LRFWDVKTKERITTLNMHCDDIE 335

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.6 bits (93), Expect = 3e-04
 Identities = 13/89 (14%), Positives = 26/89 (29%), Gaps = 5/89 (5%)

Query: 66  WSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAH---- 121
            + S      +   +  +  ++ N  G  +   G  G +  W+V +   +   + H    
Sbjct: 275 PTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDI 334

Query: 122 YRAVTCLVFSEDGSFLISGSEDGCVRIWS 150
                 L   E G  L        V+   
Sbjct: 335 EIEEDILAVDEHGDSLAEPGVF-DVKFLK 362

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 82.1 bits (201), Expect = 7e-18
 Identities = 25/145 (17%), Positives = 48/145 (33%), Gaps = 7/145 (4%)

Query: 8   SSVADTGIGCWDLESGAEQLRYKSCASPPHGLACV--GQRFLASSQLREQPSASSGSILY 65
           S   D     WD+  G  +  +    S  + +     G  F   S       A+      
Sbjct: 201 SGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSD-----DATCRLFDL 255

Query: 66  WSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAV 125
            +  +            I  ++ +  G  +  G    +  +W+            H   V
Sbjct: 256 RADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRV 315

Query: 126 TCLVFSEDGSFLISGSEDGCVRIWS 150
           +CL  ++DG  + +GS D  ++IW+
Sbjct: 316 SCLGVTDDGMAVATGSWDSFLKIWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 82.1 bits (201), Expect = 8e-18
 Identities = 32/216 (14%), Positives = 64/216 (29%), Gaps = 62/216 (28%)

Query: 82  PIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGS 141
            +  ++          G       +W+V  G   + +  H   +  + F  +G+   +GS
Sbjct: 186 DVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGS 245

Query: 142 EDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTC 201
           +D   R++         + +    L  +S       IT +     G    +++  +D  C
Sbjct: 246 DDATCRLF---------DLRADQELMTYSHDNIICGITSVSFSKSG--RLLLAGYDDFNC 294

Query: 202 KVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHI 261
            VW  LK                                                     
Sbjct: 295 NVWDALKADRAG------------------------------------------------ 306

Query: 262 IGSLSDHSKAVTCLAYS-TGDLLISGSEDGMVRVWD 296
              L+ H   V+CL  +  G  + +GS D  +++W+
Sbjct: 307 --VLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 78.2 bits (191), Expect = 2e-16
 Identities = 40/269 (14%), Positives = 85/269 (31%), Gaps = 41/269 (15%)

Query: 82  PIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGS 141
            I  +   +    +    Q G + +W+  +   +         V    ++  G+++  G 
Sbjct: 57  KIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGG 116

Query: 142 EDGCVRIWSLLTVFEECESQRAS--------------------------------HLYLH 169
            D    I++L T        R                                       
Sbjct: 117 LDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQ 176

Query: 170 SFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDP 228
           + T        + +     +   VS + D + K+W + +G   +      S I+AI   P
Sbjct: 177 TTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFP 236

Query: 229 AEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYS-TGDLLISGS 287
             + F  GS D +  +           +    +  S  +    +T +++S +G LL++G 
Sbjct: 237 NGNAFATGSDDATCRL-------FDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGY 289

Query: 288 EDGMVRVWDPITHNIVRMFRLAKGPVNNI 316
           +D    VWD +  +   +       V+ +
Sbjct: 290 DDFNCNVWDALKADRAGVLAGHDNRVSCL 318

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 47.4 bits (111), Expect = 1e-06
 Identities = 22/219 (10%), Positives = 58/219 (26%), Gaps = 25/219 (11%)

Query: 113 RLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLT-------------VFEECE 159
           R  +    H   +  + +  D   L+S S+DG + IW   T             V     
Sbjct: 46  RTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAY 105

Query: 160 SQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPS 219
           +   +++                       +  ++           L   +++ +    +
Sbjct: 106 APSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTT 165

Query: 220 VIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHII-----------GSLSDH 268
                     +   + G     + ++         S                   + + H
Sbjct: 166 CALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGH 225

Query: 269 SKAVTCLAYS-TGDLLISGSEDGMVRVWDPITHNIVRMF 306
              +  + +   G+   +GS+D   R++D      +  +
Sbjct: 226 ESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTY 264

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 44.7 bits (104), Expect = 1e-05
 Identities = 16/74 (21%), Positives = 27/74 (36%), Gaps = 1/74 (1%)

Query: 244 IAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYS-TGDLLISGSEDGMVRVWDPITHNI 302
           ++ +           M    +L  H   +  + +     LL+S S+DG + +WD  T N 
Sbjct: 30  LSQITNNIDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNK 89

Query: 303 VRMFRLAKGPVNNI 316
           V    L    V   
Sbjct: 90  VHAIPLRSSWVMTC 103

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 77.5 bits (189), Expect = 3e-16
 Identities = 53/326 (16%), Positives = 106/326 (32%), Gaps = 50/326 (15%)

Query: 4   LIASSSVADTGIGCWDLESGAEQLRY-------------KSCASPPHGLACVGQRFLASS 50
            +A+    +     + +  G+   R               + +SP   L      F    
Sbjct: 76  YLATGC--NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDG 133

Query: 51  QLREQPSASSGSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVA 110
           +     +      ++   ++  V +     + I  +     G  +  G     + +W++ 
Sbjct: 134 KFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLR 193

Query: 111 SGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHS 170
           +G+            T  V   DG ++ +GS D  VR+W      E             S
Sbjct: 194 TGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDS----ETGFLVERLDSENES 249

Query: 171 FTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFP------------ 218
            TGH   +  +V    G   ++VS S DR+ K+W+L       +   P            
Sbjct: 250 GTGHKDSVYSVVFTRDG--QSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGH 307

Query: 219 -SVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAY 277
              + ++A    +    +GS+D  +      + +P         +  L  H  +V  +A 
Sbjct: 308 KDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNP---------LLMLQGHRNSVISVAV 358

Query: 278 S-------TGDLLISGSEDGMVRVWD 296
           +         ++  +GS D   R+W 
Sbjct: 359 ANGSSLGPEYNVFATGSGDCKARIWK 384

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 71.0 bits (172), Expect = 5e-14
 Identities = 58/343 (16%), Positives = 115/343 (33%), Gaps = 69/343 (20%)

Query: 46  FLASSQLREQPSA----SSGSILYWSWSKPQVEVKSLPA-----EPIKPIAANSHGTYIA 96
           FL     +  P A    ++   + ++ + P+     L         +  +  ++ G Y+A
Sbjct: 19  FLLDLDSQSVPDALKKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSNDGEYLA 78

Query: 97  GGGQSGDIYMWEVASGRLLKKW------------------HAHYRAVTCLVFSEDGSFLI 138
            G  +    ++ V+ G L+ +                    +    +  + FS DG FL 
Sbjct: 79  TGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLA 137

Query: 139 SGSED------------GCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYG 186
           +G+ED              + +          +   +    +      T+RI D+  G  
Sbjct: 138 TGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQC 197

Query: 187 -----------------GVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSV--------I 221
                            G    I + S DR  +VW    G L+  +   +         +
Sbjct: 198 SLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSV 257

Query: 222 DAIALDPAEHVFYAGSRDGSIYIAAL---NAESPSTSSYGMHIIGSLSDHSKAVTCLAYS 278
            ++          +GS D S+ +  L   N +S S +        +   H   V  +A +
Sbjct: 258 YSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATT 317

Query: 279 T-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVR 320
              + ++SGS+D  V  WD  + N + M +  +  V ++ V  
Sbjct: 318 QNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVAN 360

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 65.6 bits (158), Expect = 3e-12
 Identities = 18/157 (11%), Positives = 43/157 (27%), Gaps = 27/157 (17%)

Query: 66  WSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYR-- 123
                 + E  +   + +  +     G  +  G     + +W + +              
Sbjct: 240 VERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGT 299

Query: 124 ----------AVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTG 173
                      V  +  +++  +++SGS+D  V  W   +              L    G
Sbjct: 300 CEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKS--GNP---------LLMLQG 348

Query: 174 HTLRITDIVIGYGGV----SATIVSASEDRTCKVWSL 206
           H   +  + +  G           + S D   ++W  
Sbjct: 349 HRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKY 385

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 63.7 bits (153), Expect = 1e-11
 Identities = 34/167 (20%), Positives = 55/167 (32%), Gaps = 21/167 (12%)

Query: 5   IASSSVADTGIGCWDLESGAEQLRYKSCASPPHG---------LACVGQRFLASS----- 50
           IA+ S  D  +  WD E+G    R  S      G             GQ  ++ S     
Sbjct: 220 IAAGS-LDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSV 278

Query: 51  QLREQPSASSGSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVA 110
           +L    +A++ S      S           + +  +A   +  YI  G +   +  W+  
Sbjct: 279 KLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKK 338

Query: 111 SGRLLKKWHAHYRAVTCLV------FSEDGSFLISGSEDGCVRIWSL 151
           SG  L     H  +V  +          + +   +GS D   RIW  
Sbjct: 339 SGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKY 385

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 60.6 bits (145), Expect = 1e-10
 Identities = 42/285 (14%), Positives = 88/285 (30%), Gaps = 63/285 (22%)

Query: 80  AEPIKPIAANSHGTYIA---GGGQSGDIYMWEVASGRL----LKKWHAHYRAVTCLVFSE 132
           ++PI P   +     +        +    ++  A  R     L K   H   V C+ FS 
Sbjct: 13  SKPIPPFLLDLDSQSVPDALKKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSN 72

Query: 133 DGSFLISGSEDGCVRIWSLLTV-------FEECESQRASHLYLHSFTGHTLRITDIVIGY 185
           DG +L +G  +   +++ +           +   ++   +L   S     L I  +    
Sbjct: 73  DGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSP 131

Query: 186 GGVSATIVSASEDRTCKVWSLLKGRLLRNIVFP--------------------------- 218
            G    + + +EDR  ++W +   +++  +                              
Sbjct: 132 DG--KFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRI 189

Query: 219 ----------------SVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHII 262
                            V              AGS D ++ +   ++E+           
Sbjct: 190 WDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVW--DSETGFLVERLDSEN 247

Query: 263 GSLSDHSKAVTCLAYS-TGDLLISGSEDGMVRVWDPITHNIVRMF 306
            S + H  +V  + ++  G  ++SGS D  V++W+    N     
Sbjct: 248 ESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDS 292

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 68.7 bits (166), Expect = 2e-13
 Identities = 39/265 (14%), Positives = 79/265 (29%), Gaps = 18/265 (6%)

Query: 77  SLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGR--LLKKWHAHYRAVTCLVFSEDG 134
           S   EPI   A N   T IA    + +++++E +  +   + +   H   VT + ++ D 
Sbjct: 4   SFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDS 63

Query: 135 SFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVS 194
           + +++   D    +W+L     +                         +G G    +I  
Sbjct: 64  NRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICY 123

Query: 195 ASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPST 254
             ++    V               S + ++   P   +  AGS D    I +   +    
Sbjct: 124 FEQENDWWVCK------HIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEE 177

Query: 255 SSYG---------MHIIGSLSDHSKAVTCLAYS-TGDLLISGSEDGMVRVWDPITHNIVR 304
                          ++   S     V  + +S  G  +   S D  V + D      V 
Sbjct: 178 RPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVA 237

Query: 305 MFRLAKGPVNNILVVRRPLYLNLGS 329
                  P+  +  +     +  G 
Sbjct: 238 TLASETLPLLAVTFITESSLVAAGH 262

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 44.1 bits (102), Expect = 2e-05
 Identities = 13/141 (9%), Positives = 37/141 (26%), Gaps = 11/141 (7%)

Query: 15  IGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVE 74
           +   D +         S   P   +  + +  L ++             + +++     +
Sbjct: 225 VCLADADKKMAVATLASETLPLLAVTFITESSLVAA-------GHDCFPVLFTYDSAAGK 277

Query: 75  VKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDG 134
           +       +   ++    T              E ++         H  +V+ +     G
Sbjct: 278 LSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGG 337

Query: 135 SF----LISGSEDGCVRIWSL 151
                   +   DG + IW +
Sbjct: 338 KAKCSQFCTTGMDGGMSIWDV 358

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 44.1 bits (102), Expect = 2e-05
 Identities = 14/174 (8%), Positives = 47/174 (27%), Gaps = 33/174 (18%)

Query: 65  YWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRA 124
                   +   S     +  +  +++G+ +A       + + +      +    +    
Sbjct: 186 SKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLP 245

Query: 125 VTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEEC----------ESQRASHLYLHSF--- 171
           +  + F  + S + +G  D    +++  +   +           +S +        F   
Sbjct: 246 LLAVTFITESSLVAAGH-DCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNL 304

Query: 172 -----------------TGHTLRITDIVI--GYGGVSATIVSASEDRTCKVWSL 206
                            + H   ++ I +  G     +   +   D    +W +
Sbjct: 305 DKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDV 358

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 42.9 bits (99), Expect = 5e-05
 Identities = 31/197 (15%), Positives = 67/197 (34%), Gaps = 28/197 (14%)

Query: 105 YMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRAS 164
           +  ++  G L+ +  +    V  + FS +GS +   S D  V +        + +   A+
Sbjct: 184 WGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADA-----DKKMAVAT 238

Query: 165 HLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAI 224
                        IT+         +++V+A  D    +++         + F   +D  
Sbjct: 239 LASETLPLLAVTFITE---------SSLVAAGHDCFPVLFTYDSAA--GKLSFGGRLDV- 286

Query: 225 ALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTGD--- 281
              P +      +           A S  +++ G    G  S H  +V+ ++  +G    
Sbjct: 287 ---PKQSSQRGLTARERFQNLDKKASSEGSAAAG---AGLDSLHKNSVSQISVLSGGKAK 340

Query: 282 --LLISGSEDGMVRVWD 296
                +   DG + +WD
Sbjct: 341 CSQFCTTGMDGGMSIWD 357

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.0 bits (159), Expect = 2e-12
 Identities = 35/191 (18%), Positives = 67/191 (35%), Gaps = 21/191 (10%)

Query: 58  ASSGSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKK 117
           A    +  W        + +L     +  +    G ++  G     I +W+V +G  +  
Sbjct: 154 AYDFMVKVWDPETETC-LHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHT 212

Query: 118 WHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLR 177
              H    + +   ++   L+SG+ D  V+IW +                         +
Sbjct: 213 LTGHQSLTSGMELKDN--ILVSGNADSTVKIWDI------------KTGQCLQTLQGPNK 258

Query: 178 ITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFP------SVIDAIALDPAEH 231
               V         ++++S+D T K+W L  G  +RN+V         V+  I     + 
Sbjct: 259 HQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKL 318

Query: 232 VFYAGSRDGSI 242
           V   GSR+G+ 
Sbjct: 319 VCAVGSRNGTE 329

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.8 bits (148), Expect = 4e-11
 Identities = 42/213 (19%), Positives = 76/213 (35%), Gaps = 28/213 (13%)

Query: 91  HGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWS 150
            G  +  G     + +W+  +   L     H   V  L F  DG  ++SGS D  +R+W 
Sbjct: 146 DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWD 203

Query: 151 LLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGR 210
           +            +   +H+ TGH    + + +        +VS + D T K+W +  G+
Sbjct: 204 V-----------ETGNCIHTLTGHQSLTSGMELK----DNILVSGNADSTVKIWDIKTGQ 248

Query: 211 LLRNIVF--PSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDH 268
            L+ +            L   ++     S DG++ +  L       +   +   G     
Sbjct: 249 CLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGG----S 304

Query: 269 SKAVTCLAYS-TGDLLISGSEDG----MVRVWD 296
              V  +  S T  +   GS +G     + V D
Sbjct: 305 GGVVWRIRASNTKLVCAVGSRNGTEETKLLVLD 337

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.3 bits (139), Expect = 6e-10
 Identities = 35/244 (14%), Positives = 67/244 (27%), Gaps = 34/244 (13%)

Query: 87  AANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCV 146
                G  I  G     + +W   +G+ L+    H   V      ++     S      V
Sbjct: 22  CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIISGSTDRTLKV 81

Query: 147 RIWSLLTVFEECESQRASHLYLHSFTGHTLR-----------------------ITDIVI 183
                           ++   +H      +                            V 
Sbjct: 82  WNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVR 141

Query: 184 GYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIY 243
                   +VS + D   KVW       L  +   +               +GS D SI 
Sbjct: 142 CVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSL-QFDGIHVVSGSLDTSIR 200

Query: 244 IAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTGDLLISGSEDGMVRVWDPITHNIV 303
           +  +            + I +L+ H    + +     ++L+SG+ D  V++WD  T   +
Sbjct: 201 VWDVE---------TGNCIHTLTGHQSLTSGMELK-DNILVSGNADSTVKIWDIKTGQCL 250

Query: 304 RMFR 307
           +  +
Sbjct: 251 QTLQ 254

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.1 bits (136), Expect = 1e-09
 Identities = 50/315 (15%), Positives = 105/315 (33%), Gaps = 35/315 (11%)

Query: 4   LIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSI 63
            I S S  D  +  W   +G                       ++ S  R     ++ + 
Sbjct: 29  RIVSGS-DDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIISGSTDRTLKVWNAETG 87

Query: 64  LYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYR 123
                                    + H   +  G +   + +W++ +G+ L     H  
Sbjct: 88  ECIHTLYGHTSTVRCM---------HLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVA 138

Query: 124 AVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVI 183
           AV C     DG  ++SG+ D  V++W              +   LH+  GHT R+  +  
Sbjct: 139 AVRC--VQYDGRRVVSGAYDFMVKVWDP-----------ETETCLHTLQGHTNRVYSLQF 185

Query: 184 GYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIY 243
                   +VS S D + +VW +  G  +  +     +    ++  +++  +G+ D ++ 
Sbjct: 186 D----GIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSL-TSGMELKDNILVSGNADSTVK 240

Query: 244 IAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTGDLLISGSEDGMVRVWDPITHNIV 303
           I           +          +  ++         + +I+ S+DG V++WD  T   +
Sbjct: 241 I-------WDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFI 293

Query: 304 RMFRLAKGPVNNILV 318
           R     +   +  +V
Sbjct: 294 RNLVTLESGGSGGVV 308

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.1 bits (136), Expect = 1e-09
 Identities = 41/235 (17%), Positives = 73/235 (31%), Gaps = 37/235 (15%)

Query: 107 WEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLT------------- 153
           W     +  K    H   V        G+ ++SGS+D  +++WS +T             
Sbjct: 1   WRRGELKSPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGG 59

Query: 154 ------------VFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTC 201
                             + +  +             T  V         +VS S D T 
Sbjct: 60  VWSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATL 119

Query: 202 KVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHI 261
           +VW +  G+ L  ++               V   G+ D  + +                 
Sbjct: 120 RVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVS-GAYDFMVKVWDPE---------TETC 169

Query: 262 IGSLSDHSKAVTCLAYSTGDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNI 316
           + +L  H+  V  L +  G  ++SGS D  +RVWD  T N +      +   + +
Sbjct: 170 LHTLQGHTNRVYSLQFD-GIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGM 223

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.9 bits (125), Expect = 2e-08
 Identities = 20/159 (12%), Positives = 47/159 (29%), Gaps = 20/159 (12%)

Query: 4   LIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSI 63
            + S S  DT I  WD+E+G          S   G+       ++ +        +  ++
Sbjct: 189 HVVSGS-LDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSGN--------ADSTV 239

Query: 64  LYWS--WSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKW--- 118
             W     +    ++              +  ++      G + +W++ +G  ++     
Sbjct: 240 KIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTL 299

Query: 119 --HAHYRAVTCLVFSEDGSFLISGSEDGC----VRIWSL 151
                   V  +  S        GS +G     + +   
Sbjct: 300 ESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDF 338

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.3 bits (157), Expect = 2e-12
 Identities = 48/294 (16%), Positives = 97/294 (32%), Gaps = 28/294 (9%)

Query: 4   LIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSI 63
            I S    D  I  WD  +   +          H  + +  ++     +         S 
Sbjct: 27  KIVSGL-RDNTIKIWDKNTLECKRILTG-----HTGSVLCLQYDERVIITGSSD----ST 76

Query: 64  LYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYR 123
           +          + +L       +    +   +    +   I +W++AS   +        
Sbjct: 77  VRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVG 136

Query: 124 -AVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIV 182
                 V   D  +++S S D  +++W+            ++  ++ +  GH   I  + 
Sbjct: 137 HRAAVNVVDFDDKYIVSASGDRTIKVWNT-----------STCEFVRTLNGHKRGIACLQ 185

Query: 183 IGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSI 242
                    +VS S D T ++W +  G  LR +     +             +G+ DG I
Sbjct: 186 YR----DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCI-RFDNKRIVSGAYDGKI 240

Query: 243 YIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTGDLLISGSEDGMVRVWD 296
            +  L A     +  G   + +L +HS  V  L +     ++S S D  + +WD
Sbjct: 241 KVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFD-EFQIVSSSHDDTILIWD 293

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.3 bits (126), Expect = 2e-08
 Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 1/58 (1%)

Query: 257 YGMHIIGSLSDHSKAVTCLAYSTGDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVN 314
           + +  I   S+ SK V CL Y     ++SG  D  +++WD  T    R+     G V 
Sbjct: 3   HSLQRIHCRSETSKGVYCLQYD-DQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVL 59

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.1 bits (115), Expect = 4e-07
 Identities = 38/240 (15%), Positives = 73/240 (30%), Gaps = 37/240 (15%)

Query: 91  HGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSED--------GSFLISGSE 142
               I  G +   I +W+  +    +    H  +V CL + E          +  +    
Sbjct: 24  DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVIITGSSDSTVRVWDVN 83

Query: 143 DGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITD------------------IVIG 184
            G +    +         +  + + +      ++ + D                   V  
Sbjct: 84  TGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNV 143

Query: 185 YGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYI 244
                  IVSAS DRT KVW+      +R +          L   + +  +GS D +I +
Sbjct: 144 VDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHK-RGIACLQYRDRLVVSGSSDNTIRL 202

Query: 245 AALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTGDLLISGSEDGMVRVWDPITHNIVR 304
             +   +      G   +                    ++SG+ DG ++VWD +     R
Sbjct: 203 WDIECGACLRVLEGHEEL----------VRCIRFDNKRIVSGAYDGKIKVWDLVAALDPR 252

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.7 bits (101), Expect = 2e-05
 Identities = 38/220 (17%), Positives = 70/220 (31%), Gaps = 35/220 (15%)

Query: 113 RLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLT------------------- 153
           + +       + V CL +  D   ++SG  D  ++IW   T                   
Sbjct: 6   QRIHCRSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY 63

Query: 154 ------VFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLL 207
                       + R   +         +   + V+     +  +V+ S+DR+  VW + 
Sbjct: 64  DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMA 123

Query: 208 KGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSD 267
               +          A          Y  S  G   I   N  +          + +L+ 
Sbjct: 124 SPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCE-------FVRTLNG 176

Query: 268 HSKAVTCLAYSTGDLLISGSEDGMVRVWDPITHNIVRMFR 307
           H + + CL Y    L++SGS D  +R+WD      +R+  
Sbjct: 177 HKRGIACLQYR-DRLVVSGSSDNTIRLWDIECGACLRVLE 215

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.1 bits (149), Expect = 2e-11
 Identities = 10/67 (14%), Positives = 25/67 (37%), Gaps = 1/67 (1%)

Query: 86  IAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGC 145
           +     G +    G+   +  W    G  + +      +V     S D  ++++GS D  
Sbjct: 271 LKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK-ESSSVLSCDISVDDKYIVTGSGDKK 329

Query: 146 VRIWSLL 152
             ++ ++
Sbjct: 330 ATVYEVI 336

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.8 bits (130), Expect = 7e-09
 Identities = 22/147 (14%), Positives = 48/147 (32%), Gaps = 15/147 (10%)

Query: 61  GSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHA 120
            ++  W   + +   +      I  +     G ++A G +S ++ +  V       + H 
Sbjct: 205 NTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDK-YQLHL 263

Query: 121 HYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITD 180
           H   V  L F+  G + +S  +D  +  W                      +  +  +  
Sbjct: 264 HESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPY------------GASIFQSKESSSVLS 311

Query: 181 IVIGYGGVSATIVSASEDRTCKVWSLL 207
             I        IV+ S D+   V+ ++
Sbjct: 312 CDISVDD--KYIVTGSGDKKATVYEVI 336

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.5 bits (111), Expect = 1e-06
 Identities = 43/310 (13%), Positives = 85/310 (27%), Gaps = 51/310 (16%)

Query: 46  FLASSQLREQPSASSGSILYWSWSKPQV-EVKSLP-AEPIKPIAANSHGTYIAGGGQSGD 103
           F  ++  + QP       L          ++ +L   E +  +  ++   ++  GG+ G 
Sbjct: 15  FHVTADGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTRHVYTGGK-GC 73

Query: 104 IYMWEVASGRLLKK-----WHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSL------- 151
           + +W+++                   +       DG  LI G E   + IW L       
Sbjct: 74  VKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRI 133

Query: 152 ------------------------LTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGG 187
                                       +   +    H                 I    
Sbjct: 134 KAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISN 193

Query: 188 VSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAAL 247
               + +   D T + W L +GR L+   F S I ++   P       G    ++ +  +
Sbjct: 194 DGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHV 253

Query: 248 NAESPSTSSYGMHIIGSLSDHSKAVTCLAYS-TGDLLISGSEDGMVRVWDPITHNIVRMF 306
           N                L  H   V  L ++  G   +S  +D ++  W       +   
Sbjct: 254 N----------KPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS 303

Query: 307 RLAKGPVNNI 316
           +     V + 
Sbjct: 304 K-ESSSVLSC 312

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.0 bits (107), Expect = 5e-06
 Identities = 37/296 (12%), Positives = 85/296 (28%), Gaps = 29/296 (9%)

Query: 4   LIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSI 63
            + +       +  WD+     +                  + L           +S   
Sbjct: 65  HVYTGG--KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLS 122

Query: 64  --LYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAH 121
                + +       +  A     +A +            G+I +W++ +  L++++  H
Sbjct: 123 IWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGH 182

Query: 122 YRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDI 181
               +C+  S DG+ L +G  D  VR W L    +  +    S ++   +          
Sbjct: 183 TDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPT------- 235

Query: 182 VIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGS 241
                     +    E    +V  + K    +  +  S + ++        F +  +D  
Sbjct: 236 -------GEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNL 288

Query: 242 IYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYS-TGDLLISGSEDGMVRVWD 296
           +        +    S            S +V     S     +++GS D    V++
Sbjct: 289 LNAWRTPYGASIFQS----------KESSSVLSCDISVDDKYIVTGSGDKKATVYE 334

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.8 bits (104), Expect = 1e-05
 Identities = 12/104 (11%), Positives = 25/104 (24%), Gaps = 7/104 (6%)

Query: 80  AEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLIS 139
           ++P       + G           +    +           H   V  +  S     + +
Sbjct: 9   SKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTRHVYT 68

Query: 140 GSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVI 183
           G   GCV++W +            S +           I    +
Sbjct: 69  GG-KGCVKVWDISH------PGNKSPVSQLDCLNRDNYIRSCKL 105

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.1 bits (84), Expect = 0.003
 Identities = 11/80 (13%), Positives = 25/80 (31%), Gaps = 7/80 (8%)

Query: 267 DHSKAVTCLAYS-TGDLLISGSEDGMVRVWDPITHNIVRMFRLA-----KGPVNNILVVR 320
           +H + V  +  S     + +G   G V+VWD                     + +  ++ 
Sbjct: 49  NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLP 107

Query: 321 RPLYLNLGSFSNPHTSSRRH 340
               L +G  ++  +     
Sbjct: 108 DGCTLIVGGEASTLSIWDLA 127

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 59.8 bits (143), Expect = 2e-10
 Identities = 34/337 (10%), Positives = 82/337 (24%), Gaps = 37/337 (10%)

Query: 4   LIASSSVADTGIGCWDLESGAEQLRYK-SCASPPHGLACV--GQRFLASSQLREQPSASS 60
            +  ++  +  +   D+ S              P         +     +          
Sbjct: 10  YMIVTNYPNN-LHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGID 68

Query: 61  GSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIA------------GGGQSGDIYMWE 108
                 ++      V       +   A +  G  +                +   + ++ 
Sbjct: 69  LDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFS 128

Query: 109 VASGRLLK--KWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLT---------VFEE 157
            A G   K  +     R V  +  ++DGS  ++G +   + + +              + 
Sbjct: 129 TADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVALPLRNWNRKG 188

Query: 158 CESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVF 217
             +    + + H    H   +   +  +        +A          L  G+       
Sbjct: 189 YSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFA 248

Query: 218 PSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAY 277
                       E  F                   +        +   ++      C+A+
Sbjct: 249 DL---------TELYFTGLRSPKDPNQIYGVLNRLAKYDLKQRKLIKAANLDHTYYCVAF 299

Query: 278 ST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPV 313
              GD L  G     + V++P T   V+  +L  G +
Sbjct: 300 DKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKLPGGDM 336

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 55.6 bits (132), Expect = 4e-09
 Identities = 28/286 (9%), Positives = 84/286 (29%), Gaps = 52/286 (18%)

Query: 73  VEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRL---LKKWHAHYRAVTCLV 129
           V+++  P + I  I      + +      G + +++         L +   +   + C  
Sbjct: 4   VQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCN 63

Query: 130 FSEDGSFLIS-GSEDGCVRIWSLLTVFE-------------------------------- 156
           F ++    I  G+  G +    L+                                    
Sbjct: 64  FIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGL 123

Query: 157 ----ECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLL 212
               +  +     + + +   +  ++ + +      S+ ++    +   + + L      
Sbjct: 124 IEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDD 183

Query: 213 R-----NIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSS------YGMHI 261
                 + +   + D   L   +  +   S DG + +   + +    +S          +
Sbjct: 184 NGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRL 243

Query: 262 IGSLSDHSKAVTCLAYS-TGDLLISGSEDGMVRVWDPITHNIVRMF 306
               ++ +  V  + +S     L +   DG++  W+  T   ++ F
Sbjct: 244 NLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNF 289

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 51.0 bits (120), Expect = 1e-07
 Identities = 18/192 (9%), Positives = 49/192 (25%), Gaps = 9/192 (4%)

Query: 113 RLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFT 172
           ++++   A    ++ +      S L+  S DG + ++            +A ++ L    
Sbjct: 2   QIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKF--------DIQAKNVDLLQSL 53

Query: 173 GHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHV 232
            +   +             I   +         L+     + +        I        
Sbjct: 54  RYKHPLLCCNFIDNT-DLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGD 112

Query: 233 FYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTGDLLISGSEDGMV 292
               +      I  ++  +       +  + S +   K       +    LI G  +  V
Sbjct: 113 DKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQV 172

Query: 293 RVWDPITHNIVR 304
           + +         
Sbjct: 173 QWFRLPLCEDDN 184

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 49.8 bits (117), Expect = 3e-07
 Identities = 17/180 (9%), Positives = 55/180 (30%), Gaps = 10/180 (5%)

Query: 91  HGTYIAGGGQSGDIYMWEVASGRLLKKWHAHY----RAVTCLVFSEDGSFLISGSEDGCV 146
           + + +  G  +  +  + +                 +     +  ++       S DG V
Sbjct: 159 NSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRV 218

Query: 147 RIWSLLTVFEECESQRASHLY----LHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCK 202
            +       ++  S +             T     +  I   +      + +A  D    
Sbjct: 219 AVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIE--FSPRHKFLYTAGSDGIIS 276

Query: 203 VWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHII 262
            W+L   + ++N    +    + +  ++++    + D +    A   ++   ++  ++II
Sbjct: 277 CWNLQTRKKIKNFAKFNEDSVVKIACSDNILCLATSDDTFKTNAAIDQTIELNASSIYII 336

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 47.5 bits (111), Expect = 1e-06
 Identities = 35/312 (11%), Positives = 71/312 (22%), Gaps = 23/312 (7%)

Query: 4   LIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACV------GQRFLASSQLREQPS 57
           L+  +S  D  +  +  +  A+ +         H L C         +    +   E   
Sbjct: 25  LLLITS-WDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILK 83

Query: 58  ASSGSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKK 117
                   +           +              ++             +         
Sbjct: 84  VDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLN 143

Query: 118 WHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLR 177
            +             + S LI G  +  V+ + L    ++  +   S L         L 
Sbjct: 144 SNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLP 203

Query: 178 ITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFP-------SVIDAIALDPAE 230
                     +   +     D     ++  K    R              +++I   P  
Sbjct: 204 KEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRH 263

Query: 231 HVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTGDLLISGSEDG 290
              Y    DG I    L             I      +  +V  +A S  ++L   + D 
Sbjct: 264 KFLYTAGSDGIISCWNLQT--------RKKIKNFAKFNEDSVVKIACS-DNILCLATSDD 314

Query: 291 MVRVWDPITHNI 302
             +    I   I
Sbjct: 315 TFKTNAAIDQTI 326

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 45.6 bits (106), Expect = 5e-06
 Identities = 9/62 (14%), Positives = 20/62 (32%), Gaps = 1/62 (1%)

Query: 259 MHIIGSLSDHSKAVTCLAYS-TGDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNIL 317
           M I+         ++ +    +  LL+  S DG + V+             +    + +L
Sbjct: 1   MQIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLL 60

Query: 318 VV 319
             
Sbjct: 61  CC 62

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.4 bits (95), Expect = 1e-04
 Identities = 23/125 (18%), Positives = 39/125 (31%), Gaps = 19/125 (15%)

Query: 107 WEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHL 166
           +     RL  K       V  + FS    FL +   DG +  W+L            +  
Sbjct: 236 FAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNL-----------QTRK 284

Query: 167 YLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIAL 226
            + +F        D V+        +  A+ D T K  + +   +  N    S I    +
Sbjct: 285 KIKNFAKFN---EDSVVKIACSDNILCLATSDDTFKTNAAIDQTIELN---ASSI--YII 336

Query: 227 DPAEH 231
              E+
Sbjct: 337 FDYEN 341

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 55.2 bits (131), Expect = 5e-09
 Identities = 41/345 (11%), Positives = 80/345 (23%), Gaps = 49/345 (14%)

Query: 2   ELLIASSSVADTGIGCWDLESGA--EQLRYKSCASPPHGLACV--GQRFLASSQLREQPS 57
           + ++A +      +   D E  A  + +        P        G+   A+        
Sbjct: 2   DYILAPAR--PDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATV------- 52

Query: 58  ASSGSILYWSWSKPQVEVKSLPAEPIKP------IAANSHGTYIAGGGQSGDIYMWEVAS 111
             S S++       +   +   + P +        A +  G  +A       + +     
Sbjct: 53  NKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEV 112

Query: 112 G-----------RLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECES 160
                          +K     R +T L ++ DGS L     D  V      T+ E+   
Sbjct: 113 QPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPI 172

Query: 161 QRASHLYLHSFTGHTLRITDIVIGYGGV--------SATIVSASEDRTCKVWSLLKGRLL 212
           Q              +       G                   +         L  G + 
Sbjct: 173 QSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMA 232

Query: 213 RNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAV 272
              V    +   +         A      +    L              I  +     + 
Sbjct: 233 MREVRIMDVFYFSTAVNPAKTRAFGAYNVLESFDLE---------KNASIKRV-PLPHSY 282

Query: 273 TCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNI 316
             +  ST G  +  G   G +  +D  T        L      ++
Sbjct: 283 YSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDLPGNASMSL 327

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 54.1 bits (128), Expect = 1e-08
 Identities = 23/303 (7%), Positives = 62/303 (20%), Gaps = 23/303 (7%)

Query: 2   ELLIASSSVADTGIGCWDLESGAEQLRYKS--CASPPHGLACVGQRFLASSQLREQPSAS 59
           ++     +     +G +D  +G  +   ++                 +A+ +        
Sbjct: 55  KVAFIHGTREGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDL 114

Query: 60  SGSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEV-ASGRLLKKW 118
                       +  +            A                 +      GR +   
Sbjct: 115 ETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAA 174

Query: 119 HAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLT-VFEECESQRASHLYLHSFTGHTLR 177
                      F  D   L   S          +   F      +   + L   + +  +
Sbjct: 175 TTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTK 234

Query: 178 ITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAI---ALDPAEHVFY 234
           +          +         +     ++  G     I   S I              + 
Sbjct: 235 LVPR--SMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQ 292

Query: 235 AGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVR 293
                G +    +                 +++    +T L  S     ++   +DG + 
Sbjct: 293 GAPEKGVLLKYDVKT-------------RKVTEVKNNLTDLRLSADRKTVMVRKDDGKIY 339

Query: 294 VWD 296
            + 
Sbjct: 340 TFP 342

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 50.2 bits (118), Expect = 2e-07
 Identities = 11/60 (18%), Positives = 24/60 (40%), Gaps = 4/60 (6%)

Query: 92  GTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSL 151
             Y  G  + G +  ++V + ++          +T L  S D   ++   +DG +  + L
Sbjct: 288 AAYYQGAPEKGVLLKYDVKTRKV----TEVKNNLTDLRLSADRKTVMVRKDDGKIYTFPL 343

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 47.5 bits (111), Expect = 2e-06
 Identities = 24/207 (11%), Positives = 50/207 (24%), Gaps = 25/207 (12%)

Query: 17  CWDLESGAEQLRYKSCASPPHGLACVGQRFLAS-SQLREQPSASSGSILYWSWSKPQVEV 75
            +D+E           +           + L   S     PS     + +      +  V
Sbjct: 163 VYDMEGRKIFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFV 222

Query: 76  KSLPAEPIKPIAANSHGTYIAGGGQSGD-------IYMWEVASGRLLKKWHAHYRAVTCL 128
             L      P            G    +           +    R++    +     +  
Sbjct: 223 IPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVP 282

Query: 129 VFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGV 188
           V  E  ++     E G +  + + T                  T     +TD+ +     
Sbjct: 283 VHGEFAAYYQGAPEKGVLLKYDVKT---------------RKVTEVKNNLTDLRLSADR- 326

Query: 189 SATIVSASEDRTCKVWSLLKGRLLRNI 215
             T++   +D     + L K    R +
Sbjct: 327 -KTVMVRKDDGKIYTFPLEKPEDERTV 352

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 46.4 bits (108), Expect = 3e-06
 Identities = 24/218 (11%), Positives = 54/218 (24%), Gaps = 17/218 (7%)

Query: 92  GTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDG--CVRIW 149
           G  IA   + G  ++ +V+   +LK        +  +    D              + I+
Sbjct: 15  GDLIAFVSR-GQAFIQDVSGTYVLKVPEPL--RIRYVRRGGDTKVAFIHGTREGDFLGIY 71

Query: 150 SLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKG 209
              T                 F  +   +  + +   G  A + +   +         K 
Sbjct: 72  DYRTGK------------AEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKP 119

Query: 210 RLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHS 269
            ++       + D    D +  + Y            +          G  I  + +++S
Sbjct: 120 TVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENS 179

Query: 270 KAVTCLAYSTGDLLISGSEDGMVRVWDPITHNIVRMFR 307
                   +    L   S   +    D +  N      
Sbjct: 180 HDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVV 217

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 53.4 bits (126), Expect = 1e-08
 Identities = 16/89 (17%), Positives = 38/89 (42%), Gaps = 2/89 (2%)

Query: 65  YWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVAS-GRLLKKWHAHYR 123
            W++   ++   S                 +A G    +I+++ V    +++K  +AH  
Sbjct: 200 RWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKD 259

Query: 124 AVTCLVFSEDGSFLISGSEDGCVRIWSLL 152
            V  L++    + L+S   D C++ W+++
Sbjct: 260 GVNNLLWETPST-LVSSGADACIKRWNVV 287

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 49.2 bits (115), Expect = 3e-07
 Identities = 12/90 (13%), Positives = 30/90 (33%), Gaps = 13/90 (14%)

Query: 118 WHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLR 177
                          +   + +GS D  + I+S+          +     + +   H   
Sbjct: 211 ISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSV----------KRPMKIIKALNAHKDG 260

Query: 178 ITDIVIGYGGVSATIVSASEDRTCKVWSLL 207
           + +++        T+VS+  D   K W+++
Sbjct: 261 VNNLLWETPS---TLVSSGADACIKRWNVV 287

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 48.8 bits (114), Expect = 5e-07
 Identities = 19/74 (25%), Positives = 32/74 (43%), Gaps = 8/74 (10%)

Query: 223 AIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTGDL 282
           A   +  E +   GS D +I+I ++           M II +L+ H   V  L + T   
Sbjct: 220 ANEEEIEEDLVATGSLDTNIFIYSVKR--------PMKIIKALNAHKDGVNNLLWETPST 271

Query: 283 LISGSEDGMVRVWD 296
           L+S   D  ++ W+
Sbjct: 272 LVSSGADACIKRWN 285

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 43.4 bits (100), Expect = 3e-05
 Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 4/46 (8%)

Query: 111 SGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFE 156
              +LK    H + +T L  +     LISGS DG +  WS  ++ +
Sbjct: 2   HDEVLKTISGHNKGITALTVNP----LISGSYDGRIMEWSSSSMHQ 43

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 42.3 bits (97), Expect = 5e-05
 Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 3/38 (7%)

Query: 262 IGSLSDHSKAVTCLAYSTGDLLISGSEDGMVRVWDPIT 299
           + ++S H+K +T L  +    LISGS DG +  W   +
Sbjct: 6   LKTISGHNKGITALTVNP---LISGSYDGRIMEWSSSS 40

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 53.1 bits (126), Expect = 2e-08
 Identities = 21/258 (8%), Positives = 52/258 (20%), Gaps = 17/258 (6%)

Query: 65  YWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRA 124
                 P     S+           S    +     S       V      +   +    
Sbjct: 109 IADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCF 168

Query: 125 V-------TCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLR 177
                   T  + S   S   S           +            +             
Sbjct: 169 HIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCT------GAQNCSSQAAQANYP 222

Query: 178 ITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGS 237
              +      +    + A+           +     +    +    +A           +
Sbjct: 223 GMLVWAVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILT 282

Query: 238 RDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYS---TGDLLISGSEDGMVRV 294
            + S    A    + S ++      G +  +      +  +     D   + +   ++ +
Sbjct: 283 VEHSRSCLAAAENTSSVTASVGQTSGPI-SNGHDSDAIIAAQDGASDNYANSAGTEVLDI 341

Query: 295 WDPITHNIVRMFRLAKGP 312
           +D  +        L KGP
Sbjct: 342 YDAASDQDQSSVELDKGP 359

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 50.7 bits (120), Expect = 2e-07
 Identities = 31/271 (11%), Positives = 67/271 (24%), Gaps = 29/271 (10%)

Query: 79  PAEPIKPIAANSHGTYI---AGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGS 135
            +    P  A S  ++I   A    + + ++     G  L      + ++   V    GS
Sbjct: 21  SSCDHGP-GAISRRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLSLA--VAGHSGS 77

Query: 136 FLI----------SGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGY 185
                         G     V ++  +T     +      + L      ++     +IG 
Sbjct: 78  DFALASTSFARSAKGKRTDYVEVFDPVTFLPIAD------IELPDAPRFSVGPRVHIIGN 131

Query: 186 GGVSATI-VSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYI 244
              SA +             S+      +     S         A    Y GS   S+  
Sbjct: 132 CASSACLLFFLFGSSAAAGLSVPGASDDQLT--KSASCFHIHPGAAATHYLGSCPASLAA 189

Query: 245 AALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTGDLLISGSEDGMVRVWDPITHNIVR 304
           + L A     ++ G+         + +      +   +L+  +    +   D        
Sbjct: 190 SDLAAA---PAAAGIVGAQCTGAQNCSSQAAQANYPGMLVW-AVASSILQGDIPAAGATM 245

Query: 305 MFRLAKGPVNNILVVRRPLYLNLGSFSNPHT 335
              +            R     + +      
Sbjct: 246 KAAIDGNESGRKADNFRSAGFQMVAKLKNTD 276

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 40.0 bits (92), Expect = 4e-04
 Identities = 19/220 (8%), Positives = 54/220 (24%), Gaps = 13/220 (5%)

Query: 5   IASSSVADTGIGCWDLESGAE--QLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGS 62
           +       +      +   ++    +  SC     G A         + L     A++ +
Sbjct: 138 LLFFLFGSSAAAGLSVPGASDDQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPA 197

Query: 63  ILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHY 122
                 ++                 AN  G  +     S        A   +      + 
Sbjct: 198 AAGIVGAQCTGAQNCSSQ----AAQANYPGMLVWAVASSILQGDIPAAGATMKAAIDGNE 253

Query: 123 RAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLR----- 177
                  F   G  +++  ++    +   +     C +   +   + +  G T       
Sbjct: 254 SGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNG 313

Query: 178 --ITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNI 215
                I+    G S    +++      ++     +   ++
Sbjct: 314 HDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSV 353

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 53.0 bits (125), Expect = 3e-08
 Identities = 39/220 (17%), Positives = 70/220 (31%), Gaps = 18/220 (8%)

Query: 87  AANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCV 146
                  Y+  G     I +++  + + L +   H   V  L ++  G  L+SGS D  V
Sbjct: 18  CLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTV 76

Query: 147 RIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSL 206
           R+W +         +  +             I  IV G           S D T  VW L
Sbjct: 77  RVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTG-----------SRDNTLHVWKL 125

Query: 207 LKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLS 266
            K   + +         +   P E+ ++ G   G +          + S +G  ++    
Sbjct: 126 PKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMA------SVRTVSGHGNIVVSGSY 179

Query: 267 DHSKAVTCLAYSTGDLLISGSEDGMVRVWDPITHNIVRMF 306
           D++  V  +A      ++SG  D +               
Sbjct: 180 DNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISA 219

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 48.4 bits (113), Expect = 9e-07
 Identities = 11/88 (12%), Positives = 24/88 (27%), Gaps = 2/88 (2%)

Query: 65  YWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKK-WHAHYR 123
               +       S     +  I        I   G      ++ + SG+L+         
Sbjct: 266 RGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHANILKDAD 325

Query: 124 AVTCLVFSEDGSFLISGSEDGCVRIWSL 151
            +  + F      + +  +DG   +  L
Sbjct: 326 QIWSVNFKGKT-LVAAVEKDGQSFLEIL 352

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 47.2 bits (110), Expect = 2e-06
 Identities = 13/53 (24%), Positives = 24/53 (45%)

Query: 264 SLSDHSKAVTCLAYSTGDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNI 316
           +L  H  +V        + +I+G++D M+RV+D I    +       G V  +
Sbjct: 7   TLRGHMTSVITCLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWAL 59

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 43.3 bits (100), Expect = 3e-05
 Identities = 15/108 (13%), Positives = 32/108 (29%), Gaps = 14/108 (12%)

Query: 99  GQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEEC 158
             +        A+    K  + H        F    + L+SGS +    I++L       
Sbjct: 259 AAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGS-ENQFNIYNL------- 310

Query: 159 ESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSL 206
              R+  L   +      +I  +      +   + +  +D    +  L
Sbjct: 311 ---RSGKLVHANILKDADQIWSVNFKGKTL---VAAVEKDGQSFLEIL 352

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.4 bits (95), Expect = 1e-04
 Identities = 28/314 (8%), Positives = 74/314 (23%), Gaps = 9/314 (2%)

Query: 4   LIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSI 63
            + + +  D  I  +D  +    L+          L       L S              
Sbjct: 25  YVITGA-DDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVR----VW 79

Query: 64  LYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYR 123
                    V            I    +  YI  G +   +++W++     +      + 
Sbjct: 80  DIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHD 139

Query: 124 AVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVI 183
                   E+  + +         + S+ TV        +             ++  + I
Sbjct: 140 YPLVFHTPEENPYFVGVL---RGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYI 196

Query: 184 GYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIY 243
             G       +  +    +  S      +R     +      L     +           
Sbjct: 197 LSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLSDKFL 256

Query: 244 IAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTGDLLISGSEDGMVRVWDPITHNIV 303
           ++A    S        +       H+       +   D ++    +    +++  +  +V
Sbjct: 257 VSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGSENQFNIYNLRSGKLV 316

Query: 304 RMFRLA-KGPVNNI 316
               L     + ++
Sbjct: 317 HANILKDADQIWSV 330

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.3 bits (92), Expect = 3e-04
 Identities = 34/248 (13%), Positives = 78/248 (31%), Gaps = 24/248 (9%)

Query: 49  SSQLREQPSASSGSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWE 108
            S + +        +++ +  +    V  L          + HG  +  G     + +W+
Sbjct: 128 ESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWD 187

Query: 109 VASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYL 168
           VA  + L     H   +   ++  +    IS S D  +RIW L         Q  + L  
Sbjct: 188 VAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVG 247

Query: 169 HSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDP 228
                                  +VSA+ D + + W         +    ++        
Sbjct: 248 LLRLSDK---------------FLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYV 292

Query: 229 AEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTGDLLISGSE 288
           ++++  +GS +    I  L +        G  +  ++   +  +  + +    L+ +  +
Sbjct: 293 SDNILVSGS-ENQFNIYNLRS--------GKLVHANILKDADQIWSVNFKGKTLVAAVEK 343

Query: 289 DGMVRVWD 296
           DG   +  
Sbjct: 344 DGQSFLEI 351

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 51.9 bits (122), Expect = 4e-08
 Identities = 13/42 (30%), Positives = 21/42 (50%)

Query: 112 GRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLT 153
           G + +  + H +A+T L  S DG  L S   +G +  W + T
Sbjct: 2   GSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDIST 43

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 50.0 bits (117), Expect = 2e-07
 Identities = 9/63 (14%), Positives = 24/63 (38%), Gaps = 2/63 (3%)

Query: 91  HGTYIAGGGQSGDIYMWEVASG--RLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRI 148
               +A G     + +W +       +    AH  +    V   + + ++S  +D  ++ 
Sbjct: 235 DNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKF 294

Query: 149 WSL 151
           W++
Sbjct: 295 WNV 297

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 45.7 bits (106), Expect = 5e-06
 Identities = 13/69 (18%), Positives = 26/69 (37%), Gaps = 6/69 (8%)

Query: 228 PAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTGDLLISGS 287
           P       GS D S+ +  +N  S         II   +    +V  + +     ++S  
Sbjct: 234 PDNVRLATGSLDNSVIVWNMNKPS------DHPIIIKGAHAMSSVNSVIWLNETTIVSAG 287

Query: 288 EDGMVRVWD 296
           +D  ++ W+
Sbjct: 288 QDSNIKFWN 296

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 45.0 bits (104), Expect = 9e-06
 Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 1/44 (2%)

Query: 265 LSDHSKAVTCLAYS-TGDLLISGSEDGMVRVWDPITHNIVRMFR 307
              H+KA+T L+ S  G  L S   +G +  WD  T    R+F 
Sbjct: 8   RYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFP 51

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 40.0 bits (91), Expect = 3e-04
 Identities = 23/89 (25%), Positives = 36/89 (40%), Gaps = 11/89 (12%)

Query: 118 WHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLR 177
           W  H   V C+ +S D   L +GS D  V +W++    +           +     H + 
Sbjct: 220 WTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHP---------IIIKGAHAMS 270

Query: 178 ITDIVIGYGGVSATIVSASEDRTCKVWSL 206
             + VI       TIVSA +D   K W++
Sbjct: 271 SVNSVIWLNE--TTIVSAGQDSNIKFWNV 297

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 52.1 bits (123), Expect = 6e-08
 Identities = 21/257 (8%), Positives = 54/257 (21%), Gaps = 14/257 (5%)

Query: 58  ASSGSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKK 117
             +                      +  +  +           +  + + ++      + 
Sbjct: 85  PVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRM 144

Query: 118 WHAHYRA-------VTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHS 170
                          T  +   DGS              +   VF   +    +H     
Sbjct: 145 LDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQ 204

Query: 171 FTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAE 230
             G  +  T      G +    +S+ + +       L      +   P     +A   A 
Sbjct: 205 KAGRLVWPTY----TGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRAL 260

Query: 231 HVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYS---TGDLLISGS 287
              Y        +     +              +  +    +  +  S      L    +
Sbjct: 261 DRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLLYALST 320

Query: 288 EDGMVRVWDPITHNIVR 304
            D  + + D  +   +R
Sbjct: 321 GDKTLYIHDAESGEELR 337

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 48.2 bits (113), Expect = 8e-07
 Identities = 34/241 (14%), Positives = 63/241 (26%), Gaps = 27/241 (11%)

Query: 81  EPIKPIAANSHGTYI-----AGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGS 135
           EP    A       +     A        ++ +  +GR++      +  +   V ++DGS
Sbjct: 2   EPRILEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGF--LPNPVVADDGS 59

Query: 136 FL----------ISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGY 185
           F+            G     V ++  +T            L                +  
Sbjct: 60  FIAHASTVFSRIARGERTDYVEVFDPVT----LLPTADIELPDAPRFLVGTYPWMTSLTP 115

Query: 186 GGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIA 245
            G +      S      V  L      R +             A   F+   RDGS+   
Sbjct: 116 DGKTLLFYQFSPAPAVGVVDLEGKAFKRML--DVPDCYHIFPTAPDTFFMHCRDGSLAKV 173

Query: 246 ALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTGD-LLISGSEDGMVRVWDPITHNIVR 304
           A        +    H      +    +   AYS     L+  +  G +   D  + +   
Sbjct: 174 AF---GTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKF 230

Query: 305 M 305
           +
Sbjct: 231 L 231

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 50.7 bits (119), Expect = 1e-07
 Identities = 14/64 (21%), Positives = 26/64 (40%), Gaps = 3/64 (4%)

Query: 91  HGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCL---VFSEDGSFLISGSEDGCVR 147
                A  G    I +W+V + + ++KW    + +      V +     +IS S DG + 
Sbjct: 262 DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLN 321

Query: 148 IWSL 151
            + L
Sbjct: 322 FYEL 325

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 50.3 bits (118), Expect = 2e-07
 Identities = 43/286 (15%), Positives = 74/286 (25%), Gaps = 60/286 (20%)

Query: 86  IAANSHGTYIA-GGGQSGDIYMWEVASGRL--LKKWHAHY-RAVTCLVFS--EDGSFLIS 139
           ++ +     IA   G+S  +   +    ++  + ++  H    VT + FS  +   +L S
Sbjct: 23  LSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCS 82

Query: 140 GSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDR 199
           G E G V +W       + ES          F      I+DI   + G    +V    D 
Sbjct: 83  GDESGKVIVWGWTF---DKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDN 139

Query: 200 TCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGM 259
                S   G  L  +   S               + +      +          S+   
Sbjct: 140 FGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDR 199

Query: 260 HIIGSLSDHSKAVTCLAYST---------------------------------------- 279
                       V  + +S                                         
Sbjct: 200 THHK----QGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGI 255

Query: 280 -------GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILV 318
                       +   D  +RVWD  T   V+ + L K  + N  V
Sbjct: 256 FALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQV 301

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 46.1 bits (107), Expect = 5e-06
 Identities = 12/90 (13%), Positives = 27/90 (30%), Gaps = 12/90 (13%)

Query: 118 WHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLR 177
                +     +   D     +   D  +R+W +            +   +  +T    +
Sbjct: 247 DQEPVQGGIFALSWLDSQKFATVGADATIRVWDV-----------TTSKCVQKWTLDKQQ 295

Query: 178 ITDIVIGYGGVS-ATIVSASEDRTCKVWSL 206
           + +  +G        I+S S D T   + L
Sbjct: 296 LGNQQVGVVATGNGRIISLSLDGTLNFYEL 325

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.4 bits (87), Expect = 0.001
 Identities = 10/66 (15%), Positives = 19/66 (28%), Gaps = 5/66 (7%)

Query: 231 HVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTGDLLISGSEDG 290
             F     D +I +        +TS                   +  +    +IS S DG
Sbjct: 264 QKFATVGADATIRVW-----DVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDG 318

Query: 291 MVRVWD 296
            +  ++
Sbjct: 319 TLNFYE 324

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 50.7 bits (119), Expect = 1e-07
 Identities = 16/80 (20%), Positives = 23/80 (28%), Gaps = 1/80 (1%)

Query: 86  IAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGC 145
           +     G  I        +Y   V S    + +  H    T    S  G +  SG   G 
Sbjct: 23  LGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGN 81

Query: 146 VRIWSLLTVFEECESQRASH 165
           VRIW         ++     
Sbjct: 82  VRIWDTTQTTHILKTTIPVF 101

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 43.7 bits (101), Expect = 2e-05
 Identities = 21/87 (24%), Positives = 34/87 (39%), Gaps = 12/87 (13%)

Query: 118 WHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLR 177
             AH  +V  L +S DG+ + S S D  ++IW++           A+     +    T R
Sbjct: 234 NVAHSGSVFGLTWSPDGTKIASASADKTIKIWNV-----------ATLKVEKTIPVGT-R 281

Query: 178 ITDIVIGYGGVSATIVSASEDRTCKVW 204
           I D  +G       +VS S +      
Sbjct: 282 IEDQQLGIIWTKQALVSISANGFINFV 308

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 42.2 bits (97), Expect = 6e-05
 Identities = 29/290 (10%), Positives = 71/290 (24%), Gaps = 14/290 (4%)

Query: 9   SVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSW 68
               T +    + S  +   Y   +            +  +S          G++  W  
Sbjct: 34  YCNGTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCAS------GDVHGNVRIWDT 87

Query: 69  SKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCL 128
           ++    +K+       P+   S  +        G+                         
Sbjct: 88  TQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQAR 147

Query: 129 VFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGV 188
             +                  + + +FE    +  S    H+   H++R       +   
Sbjct: 148 AMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFAST 207

Query: 189 SATIVSASED-RTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAAL 247
                    +        + +   L+N+     +  +   P      + S D +I I  +
Sbjct: 208 GGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNV 267

Query: 248 NAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTGDLLISGSEDGMVRVWDP 297
                         I   +        + ++    L+S S +G +   +P
Sbjct: 268 ATLKV------EKTIPVGTRIEDQQLGIIWT-KQALVSISANGFINFVNP 310

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 36.8 bits (83), Expect = 0.004
 Identities = 16/85 (18%), Positives = 28/85 (32%), Gaps = 11/85 (12%)

Query: 223 AIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYS-TGD 281
            +   PA       +   S+Y   + + + +            ++HS   T    S +G 
Sbjct: 22  VLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEI---------YTEHSHQTTVAKTSPSGY 71

Query: 282 LLISGSEDGMVRVWDPITHNIVRMF 306
              SG   G VR+WD      +   
Sbjct: 72  YCASGDVHGNVRIWDTTQTTHILKT 96

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 47.6 bits (112), Expect = 2e-06
 Identities = 17/87 (19%), Positives = 33/87 (37%), Gaps = 4/87 (4%)

Query: 67  SWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVT 126
           SW K  V+ +  P + +     +    +      +G I + +  S +++K     Y AV 
Sbjct: 10  SW-KVLVKPEDRPKKQL--NDLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGY-AVH 65

Query: 127 CLVFSEDGSFLISGSEDGCVRIWSLLT 153
               S  G +L+    D  + +  L  
Sbjct: 66  ISRMSASGRYLLVIGRDARIDMIDLWA 92

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 43.4 bits (101), Expect = 3e-05
 Identities = 14/140 (10%), Positives = 36/140 (25%), Gaps = 6/140 (4%)

Query: 177 RITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAG 236
           R    +      +   V+  +     +      ++++ I     +    +  +       
Sbjct: 20  RPKKQLNDLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYAVHISRMSASGRYLLVI 79

Query: 237 SRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTGD--LLISGSEDGMVRV 294
            RD  I +  L A+ P+        I    +     +       D   +          +
Sbjct: 80  GRDARIDMIDLWAKEPTKV----AEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAI 135

Query: 295 WDPITHNIVRMFRLAKGPVN 314
            D  T    ++       V+
Sbjct: 136 MDGETLEPKQIVSTRGMTVD 155

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 45.6 bits (107), Expect = 8e-06
 Identities = 27/183 (14%), Positives = 50/183 (27%), Gaps = 13/183 (7%)

Query: 67  SWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVT 126
           SW K  V  +  P + +     +    +      +G I + + ++  +       Y AV 
Sbjct: 10  SW-KVHVAPEDRPTQQM--NDWDLENLFSVTLRDAGQIALIDGSTYEIKTVLDTGY-AVH 65

Query: 127 CLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYG 186
               S  G +L     DG V +  L         +  +   +   +      T  + G+ 
Sbjct: 66  ISRLSASGRYLFVIGRDGKVNMIDLWM------KEPTTVAEIKIGSEARSIETSKMEGWE 119

Query: 187 GVSATIVSASEDRTCKVWSLLKGRLLRNIVFPS-VIDAIALDPAEHVFY-AGSRDGSIYI 244
              A I  A       +         +         D     P   V     S     +I
Sbjct: 120 DKYA-IAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFI 178

Query: 245 AAL 247
             +
Sbjct: 179 VNV 181

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 45.2 bits (106), Expect = 1e-05
 Identities = 16/140 (11%), Positives = 38/140 (27%), Gaps = 6/140 (4%)

Query: 177 RITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAG 236
           R T  +  +   +   V+  +     +       +   +     +    L  +    +  
Sbjct: 20  RPTQQMNDWDLENLFSVTLRDAGQIALIDGSTYEIKTVLDTGYAVHISRLSASGRYLFVI 79

Query: 237 SRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTGD--LLISGSEDGMVRV 294
            RDG + +  L  + P+T    +  I   S+     T       D   +          +
Sbjct: 80  GRDGKVNMIDLWMKEPTT----VAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVI 135

Query: 295 WDPITHNIVRMFRLAKGPVN 314
            D  T    ++        +
Sbjct: 136 MDGETLEPKKIQSTRGMTYD 155

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Length = 333

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

 Score = 38.7 bits (88), Expect = 0.001
 Identities = 15/76 (19%), Positives = 25/76 (32%), Gaps = 4/76 (5%)

Query: 94  YIAGGGQSGDIYMWEVASGRLLK--KWHAHYRAVTCLVFSEDGSFL-ISGSEDGCVRIWS 150
           YIA    S  I++W +     L   +       V  +V S D  +L +    +  V  + 
Sbjct: 7   YIASPE-SQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYR 65

Query: 151 LLTVFEECESQRASHL 166
           +            S L
Sbjct: 66  IAPDDGALTFAAESAL 81

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 37.5 bits (85), Expect = 0.002
 Identities = 6/50 (12%), Positives = 17/50 (34%), Gaps = 2/50 (4%)

Query: 105 YMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFL-ISGSEDGCVRIWSLLT 153
            M +  + ++  +          +  + DG  + ++ S    V +    T
Sbjct: 227 SMIDTGTNKITARIPVG-PDPAGIAVTPDGKKVYVALSFCNTVSVIDTAT 275

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	424
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	100.0
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	100.0
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	100.0
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	100.0
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	100.0
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	100.0
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.98
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.97
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.97
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.97
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.96
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.96
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.96
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.95
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.94
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.93
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.93
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.92
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.92
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.91
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.88
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.87
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.87
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.84
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.84
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.83
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.78
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.75
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.71
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.66
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.41
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.41
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	99.33
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.31
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.28
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	99.28
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.27
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	99.26
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.26
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	99.25
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	99.21
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.2
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	99.18
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	99.18
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	99.01
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.93
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	98.82
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.81
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	98.69
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	98.67
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.59
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	98.51
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	98.37
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	98.33
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	98.32
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	98.22
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	98.22
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	98.2
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	98.17
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	98.16
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	98.14
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	98.11
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	98.08
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	98.07
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	97.96
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	97.83
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	97.79
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	97.64
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	97.49
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	97.42
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	97.33
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	97.28
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	97.22
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	97.03
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	96.18
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	95.63
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	95.59
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	95.09
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	93.63
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	93.56
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	92.91
d2hu7a1	313	Acylamino-acid-releasing enzyme, N-terminal donain	92.84
d1jtdb_	273	beta-lactamase inhibitor protein-II, BLIP-II {Stre	92.49
d1wp5a_	323	Topoisomerase IV subunit A, ParC, C-terminal domai	92.46
d1jtdb_	273	beta-lactamase inhibitor protein-II, BLIP-II {Stre	88.81
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	87.78
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	85.74
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	84.74

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.2e-45  Score=323.91  Aligned_cols=278  Identities=19%  Similarity=0.288  Sum_probs=249.1

Q ss_pred             CCCCceEEecceeecCCCccccCCCCceeEEEEECCCCcee------eeecCCCCeeEEEECCCCCEEEEecCCCcEEEE
Q 014475           34 SPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVE------VKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMW  107 (424)
Q Consensus        34 ~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~------~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw  107 (424)
                      .|...|.+++  |+|+|++|++++ + |.|+|||+......      ....|.+.|.+++|+|++++|++|+.||.|++|
T Consensus        49 ~H~~~V~~v~--fs~~g~~latg~-d-g~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~~dg~i~iw  124 (337)
T d1gxra_          49 NHGEVVCAVT--ISNPTRHVYTGG-K-GCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIW  124 (337)
T ss_dssp             CCSSCCCEEE--ECSSSSEEEEEC-B-SEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEE
T ss_pred             CCCCcEEEEE--ECCCCCEEEEEE-C-CEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCCCEEEEeecccccccc
Confidence            4667899999  999999999987 5 89999999765321      123578899999999999999999999999999


Q ss_pred             EccCc--ceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEE
Q 014475          108 EVASG--RLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGY  185 (424)
Q Consensus       108 d~~~~--~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  185 (424)
                      |+...  +....+..|...+.+++|+|++.++++++.|+.|++|++.+           .........|...+.+++|++
T Consensus       125 d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~-----------~~~~~~~~~~~~~v~~l~~s~  193 (337)
T d1gxra_         125 DLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHN-----------QTLVRQFQGHTDGASCIDISN  193 (337)
T ss_dssp             ECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTT-----------TEEEEEECCCSSCEEEEEECT
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccc-----------ccccccccccccccccccccc
Confidence            98754  45667788999999999999999999999999999999955           345566778999999999999


Q ss_pred             cCceeEEEEEeCCCcEEEEecCCCceeeeeecCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeee
Q 014475          186 GGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSL  265 (424)
Q Consensus       186 ~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~  265 (424)
                      ++  ..+++++.|+.+++||+++++.+..+.+...|.+++|+|+++++++++.|+.+++||++...          ....
T Consensus       194 ~~--~~~~~~~~d~~v~i~d~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~----------~~~~  261 (337)
T d1gxra_         194 DG--TKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPD----------KYQL  261 (337)
T ss_dssp             TS--SEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSC----------EEEE
T ss_pred             cc--cccccccccccccccccccceeecccccccceEEEEEcccccccceeccccccccccccccc----------cccc
Confidence            88  89999999999999999999999999999999999999999999999999999999998863          3355


Q ss_pred             cccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCCCcEEEEEeccCCCeeEEEEEecCceeeeccCCCceeeccC
Q 014475          266 SDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRR  339 (424)
Q Consensus       266 ~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~d~~i~iw~~  339 (424)
                      ..|...|++++|+| +++|++++.||.|++||+.+++++..+. |.++|.+++|+|++++|++|+.||.|++||+
T Consensus       262 ~~~~~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~s~d~~~l~t~s~D~~I~vWdl  335 (337)
T d1gxra_         262 HLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK-ESSSVLSCDISVDDKYIVTGSGDKKATVYEV  335 (337)
T ss_dssp             CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-CSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred             cccccccceEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEcc-CCCCEEEEEEeCCCCEEEEEeCCCeEEEEEE
Confidence            67999999999999 9999999999999999999999998876 7899999999999999999999999999986

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.1e-43  Score=322.69  Aligned_cols=315  Identities=18%  Similarity=0.247  Sum_probs=255.1

Q ss_pred             ecCCCCCceEEEeCCCCceEE-EeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCceeeee--------
Q 014475            7 SSSVADTGIGCWDLESGAEQL-RYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKS--------   77 (424)
Q Consensus         7 t~~~~dg~i~vwd~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~~--------   77 (424)
                      .+. .++.+.+|+....+... .+....+|...|.|++  |+|+|++|++++ | +.|++||+.+++.....        
T Consensus        33 ~~~-~~~~~~~~~~~~~~~~~~~l~~~~~H~~~V~~l~--fs~dg~~lasg~-d-~~i~iW~~~~~~~~~~~~~~~~~~~  107 (388)
T d1erja_          33 KKQ-TNDYYILYNPALPREIDVELHKSLDHTSVVCCVK--FSNDGEYLATGC-N-KTTQVYRVSDGSLVARLSDDSAANK  107 (388)
T ss_dssp             EEE-CSSCEEEECTTSCCCEEEEEEEEEECSSCCCEEE--ECTTSSEEEEEC-B-SCEEEEETTTCCEEEEECC------
T ss_pred             ccC-CCCcEEEeCCCCCcceeeeeEeeCCCCCcEEEEE--ECCCCCEEEEEe-C-CeEEEEEecccceEeeecccccccc
Confidence            345 67889999976554432 2222224678899999  999999999876 5 89999999877654322        


Q ss_pred             -----------cCCCCeeEEEECCCCCEEEEecCCCcEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEeeCCCcE
Q 014475           78 -----------LPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCV  146 (424)
Q Consensus        78 -----------~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i  146 (424)
                                 .+...|++++|+|++++|++|+.||.|++||...++.+..+.+|...|.++.|++++..+++++.++.+
T Consensus       108 ~~~~~~~~~~~~~~~~V~~l~~s~~~~~l~s~~~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~i  187 (388)
T d1erja_         108 DPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTV  187 (388)
T ss_dssp             -----------CCCCBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred             cccccccccccCCCCCEEEEEECCCCCcceecccccccccccccccccccccccccccccccccccccccccccccceee
Confidence                       255679999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEeCCcccchhcccccccceEEeecCCcCceeEEEEEE-cCceeEEEEEeCCCcEEEEecCCCceeeeee--------c
Q 014475          147 RIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGY-GGVSATIVSASEDRTCKVWSLLKGRLLRNIV--------F  217 (424)
Q Consensus       147 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~--------~  217 (424)
                      ++||.++           .........+. ...++.+.+ ++  .+|++++.|+.|++||.+++.....+.        |
T Consensus       188 ~~~d~~~-----------~~~~~~~~~~~-~~~~~~~~~~~~--~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h  253 (388)
T d1erja_         188 RIWDLRT-----------GQCSLTLSIED-GVTTVAVSPGDG--KYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGH  253 (388)
T ss_dssp             EEEETTT-----------TEEEEEEECSS-CEEEEEECSTTC--CEEEEEETTSCEEEEETTTCCEEEEEC------CCC
T ss_pred             eeeeccc-----------ccccccccccc-ccccccccCCCC--CeEEEEcCCCeEEEeecccCccceeeccccccccCC
Confidence            9999965           22333334344 444555554 44  899999999999999999988776653        4


Q ss_pred             CcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCC---cCceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEE
Q 014475          218 PSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSS---YGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVR  293 (424)
Q Consensus       218 ~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~---~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~  293 (424)
                      ...|.+++|+|++++|++++.||.|++||++........   ...........|...|.+++|+| +++|++|+.||.|+
T Consensus       254 ~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~  333 (388)
T d1erja_         254 KDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVL  333 (388)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEE
T ss_pred             CCCEEEEEECCCCCEEEEEECCCcEEEEeccCCccccccccccccceeeecccccceEEEEEECCCCCEEEEEeCCCEEE
Confidence            678999999999999999999999999999876543221   12234556667999999999999 99999999999999


Q ss_pred             EEeCCCCcEEEEEeccCCCeeEEEE------EecCceeeeccCCCceeeccCC
Q 014475          294 VWDPITHNIVRMFRLAKGPVNNILV------VRRPLYLNLGSFSNPHTSSRRH  340 (424)
Q Consensus       294 iwd~~~~~~~~~~~~~~~~v~~l~~------s~~~~~l~~~~~d~~i~iw~~~  340 (424)
                      +||+++++++.++.+|.++|.++++      +|++.+|++|+.||.|++|+++
T Consensus       334 vwd~~~~~~~~~l~~H~~~V~~~~~~~~~~~spd~~~l~s~s~Dg~I~iW~~~  386 (388)
T d1erja_         334 FWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYK  386 (388)
T ss_dssp             EEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEE
T ss_pred             EEECCCCcEEEEEeCCCCCEEEEEEecCcccCCCCCEEEEEeCCCEEEEEeee
Confidence            9999999999999999999999975      5789999999999999999975

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=7.7e-43  Score=307.01  Aligned_cols=293  Identities=19%  Similarity=0.346  Sum_probs=262.9

Q ss_pred             EEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCceeee-ecCCCCeeEEEECCCCCEE
Q 014475           17 CWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVK-SLPAEPIKPIAANSHGTYI   95 (424)
Q Consensus        17 vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~-~~~~~~v~~~~~s~~~~~l   95 (424)
                      .|... .....++++|   ...|.+++  |+|++++|++++.| |+|++||+.+++.... ..|...|.+++|+|++.++
T Consensus         2 ~w~p~-~~~~~~L~GH---~~~I~~l~--~sp~~~~l~s~s~D-g~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~   74 (317)
T d1vyhc1           2 EWIPR-PPEKYALSGH---RSPVTRVI--FHPVFSVMVSASED-ATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLL   74 (317)
T ss_dssp             CCCCC-SSCSCEEECC---SSCEEEEE--ECSSSSEEEEEESS-SCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEE
T ss_pred             ccCCC-CCccEEEcCC---CCCeEEEE--EcCCCCEEEEEeCC-CeEEEEECCCCCEEEEEeCCCCcEEEEeeecccccc
Confidence            45433 3444567665   46799999  99999999999987 9999999998776543 4589999999999999999


Q ss_pred             EEecCCCcEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCc
Q 014475           96 AGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHT  175 (424)
Q Consensus        96 ~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  175 (424)
                      +++..++.+.+|+....+....+..|...+.++.|+|+++.+++++.|+.+++||+++           ......+..|.
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~-----------~~~~~~~~~~~  143 (317)
T d1vyhc1          75 ASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQT-----------GYCVKTFTGHR  143 (317)
T ss_dssp             EEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTT-----------CCEEEEEECCS
T ss_pred             cccccccccccccccccccccccccccccceeeeccCCCceEEeeccCcceeEeeccc-----------ceeeeEEccCC
Confidence            9999999999999999998888999999999999999999999999999999999955           34567788899


Q ss_pred             CceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeee-cCcceeEEEECCCC--------------------CEEE
Q 014475          176 LRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAE--------------------HVFY  234 (424)
Q Consensus       176 ~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~--------------------~~l~  234 (424)
                      ..+.++++++++  .+|++++.|+.|++|++.+++....+. +...+.+++++|++                    ..++
T Consensus       144 ~~~~~~~~~~~~--~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (317)
T d1vyhc1         144 EWVRMVRPNQDG--TLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLL  221 (317)
T ss_dssp             SCEEEEEECTTS--SEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEE
T ss_pred             CcceeeecccCC--CEEEEEeCCCeEEEEeeccceeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeE
Confidence            999999999988  899999999999999999999888776 77888888888753                    4689


Q ss_pred             EEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCCCcEEEEEeccCCCe
Q 014475          235 AGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPV  313 (424)
Q Consensus       235 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~v  313 (424)
                      +++.|+.|++||++++         .++..+.+|...|.+++++| +++|++|+.||.|++||+++++++.++.+|.++|
T Consensus       222 ~~~~d~~i~~~~~~~~---------~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~V  292 (317)
T d1vyhc1         222 SGSRDKTIKMWDVSTG---------MCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFV  292 (317)
T ss_dssp             EEETTSEEEEEETTTT---------EEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCE
T ss_pred             eccCCCEEEEEECCCC---------cEEEEEeCCCCCEEEEEECCCCCEEEEEECCCeEEEEECCCCcEEEEEcCCCCCE
Confidence            9999999999999986         67788889999999999999 9999999999999999999999999999999999


Q ss_pred             eEEEEEecCceeeeccCCCceeecc
Q 014475          314 NNILVVRRPLYLNLGSFSNPHTSSR  338 (424)
Q Consensus       314 ~~l~~s~~~~~l~~~~~d~~i~iw~  338 (424)
                      ++++|+|++++|++|+.||.|++||
T Consensus       293 ~~~~~s~~~~~l~s~s~Dg~i~iWd  317 (317)
T d1vyhc1         293 TSLDFHKTAPYVVTGSVDQTVKVWE  317 (317)
T ss_dssp             EEEEECSSSSCEEEEETTSEEEEEC
T ss_pred             EEEEEcCCCCEEEEEeCCCeEEEeC
Confidence            9999999999999999999999997

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=2.1e-42  Score=304.15  Aligned_cols=285  Identities=13%  Similarity=0.137  Sum_probs=238.9

Q ss_pred             ceEEecceeecCCCccccCCCCceeEEEEECCCCcee-eeecCCCCeeEEEECCCCCEEEEecCCCcEEEEEccCccee-
Q 014475           38 GLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVE-VKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLL-  115 (424)
Q Consensus        38 ~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~-  115 (424)
                      ...+++  ++|+|+.++.+..  +.|.+|++++.... ....|.+.|++++|+|+|++||+|+.||.|++||+.+++.. 
T Consensus        19 ~~~~~a--~~~~g~~l~~~~~--~~v~i~~~~~~~~~~~~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~~   94 (311)
T d1nr0a1          19 TAVVLG--NTPAGDKIQYCNG--TSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHIL   94 (311)
T ss_dssp             CCCCCE--ECTTSSEEEEEET--TEEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCE
T ss_pred             CeEEEE--EcCCCCEEEEEeC--CEEEEEECCCCceeEEEcCCCCCEEEEEEeCCCCeEeccccCceEeeeeeecccccc
Confidence            344566  9999999998864  67999999887654 44578999999999999999999999999999999887654 


Q ss_pred             -eeeccccCCeEEEEEccCCcEEEEeeC--CCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEE
Q 014475          116 -KKWHAHYRAVTCLVFSEDGSFLISGSE--DGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATI  192 (424)
Q Consensus       116 -~~~~~~~~~i~~~~~~~~~~~l~s~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l  192 (424)
                       ..+..|.++|.+++|+|++++|++++.  +..+++|+++++           .....+.+|...|++++|+|++. ..+
T Consensus        95 ~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~-----------~~~~~l~~h~~~v~~v~~~~~~~-~~l  162 (311)
T d1nr0a1          95 KTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTG-----------TSNGNLTGQARAMNSVDFKPSRP-FRI  162 (311)
T ss_dssp             EEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTC-----------CBCBCCCCCSSCEEEEEECSSSS-CEE
T ss_pred             ccccccccCccccccccccccccccccccccccccccccccc-----------cccccccccccccccccccccce-eee
Confidence             457889999999999999999999886  456999999652           33456788999999999999874 468


Q ss_pred             EEEeCCCcEEEEecCCCceeeeee-cCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcC
Q 014475          193 VSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKA  271 (424)
Q Consensus       193 ~~~~~d~~v~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~  271 (424)
                      ++|+.|+.|++||+++++....+. |...|.++.++|+++++++++.|+.+++||.+.........  .......+|...
T Consensus       163 ~sgs~d~~i~i~d~~~~~~~~~~~~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~--~~~~~~~~h~~~  240 (311)
T d1nr0a1         163 ISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFE--DDSLKNVAHSGS  240 (311)
T ss_dssp             EEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECB--CTTSSSCSSSSC
T ss_pred             cccccccccccccccccccccccccccccccccccCcccccccccccccccccccccccccccccc--cccccccccccc
Confidence            899999999999999998888876 78899999999999999999999999999998864211100  111234468999


Q ss_pred             eEEEEecC-CCEEEEeCCCCcEEEEeCCCCcEEEEEeccCC-CeeEEEEEecCceeeeccCCCceeeccCC
Q 014475          272 VTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKG-PVNNILVVRRPLYLNLGSFSNPHTSSRRH  340 (424)
Q Consensus       272 i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~-~v~~l~~s~~~~~l~~~~~d~~i~iw~~~  340 (424)
                      |++++|+| +++|++|+.||.|+|||++++++++++..|.. ....+.+.+++.+|++++.||.|++||.+
T Consensus       241 V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t~~~~~~l~~~~~~~~~~~~~~~~~~~l~s~s~dG~i~~wd~d  311 (311)
T d1nr0a1         241 VFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPE  311 (311)
T ss_dssp             EEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETT
T ss_pred             ccccccCCCCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCccceEEEEEecCCEEEEEECCCEEEEEeCC
Confidence            99999999 99999999999999999999999999987654 34455666777899999999999999964

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.8e-39  Score=288.83  Aligned_cols=288  Identities=19%  Similarity=0.307  Sum_probs=244.9

Q ss_pred             ceEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCceeee-ecCCCCeeEEEECCCCCEEEEecCCC
Q 014475           24 AEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVK-SLPAEPIKPIAANSHGTYIAGGGQSG  102 (424)
Q Consensus        24 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~dg  102 (424)
                      +..+++++   |...|.+++  |+|++++|++++.| |+|++||+.+++.... ..|..+|.+++|+|+++++++|+.|+
T Consensus        46 ~~~~tL~G---H~~~I~~l~--~s~~~~~l~sgs~D-g~v~iWd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~  119 (340)
T d1tbga_          46 RTRRTLRG---HLAKIYAMH--WGTDSRLLVSASQD-GKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDN  119 (340)
T ss_dssp             CEEEEECC---CSSCEEEEE--ECTTSSEEEEEETT-TEEEEEETTTTEEEEEEECSCSCEEEEEECTTSSEEEEEETTC
T ss_pred             eeeEEECC---CCCCEEEEE--ECCCCCEEEEEECC-CceeeeecccceeEEEEecccccEEeeEeeccceeeeeecccc
Confidence            45566665   557799999  99999999999998 9999999998876543 46889999999999999999999999


Q ss_pred             cEEEEEccCcc----eeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCce
Q 014475          103 DIYMWEVASGR----LLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRI  178 (424)
Q Consensus       103 ~v~iwd~~~~~----~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i  178 (424)
                      .+.+|+.....    ....+.+|..........+ +..+.....+.....+....           .........+...+
T Consensus       120 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~  187 (340)
T d1tbga_         120 ICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLD-DNQIVTSSGDTTCALWDIET-----------GQQTTTFTGHTGDV  187 (340)
T ss_dssp             CEEEEESSSSCSCCCEEEEECCCSSCEEEEEEEE-TTEEEEEETTTEEEEEETTT-----------TEEEEEEECCSSCE
T ss_pred             eeecccccccccccccceeccccccccccccccc-cccccccccccccccccccc-----------ccccccccccceeE
Confidence            99999986653    3445667777666665554 55677888888999988744           33344556677788


Q ss_pred             eEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeee-cCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCc
Q 014475          179 TDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSY  257 (424)
Q Consensus       179 ~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  257 (424)
                      ....+.+..  ..+++++.|+.|++||+++++++..+. |...|++++|+|++++|++|+.||.|++||++....     
T Consensus       188 ~~~~~~~~~--~~~~~~~~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~-----  260 (340)
T d1tbga_         188 MSLSLAPDT--RLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQE-----  260 (340)
T ss_dssp             EEEEECTTS--SEEEEEETTTEEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEE-----
T ss_pred             eeecccccc--ceeEEeecCceEEEEECCCCcEEEEEeCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeeccccc-----
Confidence            888888777  899999999999999999999988887 789999999999999999999999999999988631     


Q ss_pred             CceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCCCcEEEEEeccCCCeeEEEEEecCceeeeccCCCceee
Q 014475          258 GMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTS  336 (424)
Q Consensus       258 ~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~d~~i~i  336 (424)
                        ........+...|++++|+| +++|++|+.||.|++||+.+++++..+.+|.++|++++|+|++++|++|+.||.|++
T Consensus       261 --~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~H~~~V~~l~~s~d~~~l~s~s~Dg~v~i  338 (340)
T d1tbga_         261 --LMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKI  338 (340)
T ss_dssp             --EEEECCTTCCSCEEEEEECSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTSCEEE
T ss_pred             --ccccccccccCceEEEEECCCCCEEEEEECCCEEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEccCCEEEE
Confidence              12223456778899999999 999999999999999999999999999999999999999999999999999999999


Q ss_pred             cc
Q 014475          337 SR  338 (424)
Q Consensus       337 w~  338 (424)
                      ||
T Consensus       339 Wd  340 (340)
T d1tbga_         339 WN  340 (340)
T ss_dssp             EC
T ss_pred             eC
Confidence            97

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.3e-39  Score=288.45  Aligned_cols=265  Identities=16%  Similarity=0.242  Sum_probs=228.5

Q ss_pred             EEeecCCCCCceEEEeCCCCceEEEe--eCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCcee---eeec
Q 014475            4 LIASSSVADTGIGCWDLESGAEQLRY--KSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVE---VKSL   78 (424)
Q Consensus         4 ~lat~~~~dg~i~vwd~~~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~---~~~~   78 (424)
                      +||||+  ||.|+|||+.++.....+  .....|...|.+++  |+|++++|++++.| |.|++||+......   ....
T Consensus        65 ~latg~--dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~--~s~dg~~l~s~~~d-g~i~iwd~~~~~~~~~~~~~~  139 (337)
T d1gxra_          65 HVYTGG--KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCK--LLPDGCTLIVGGEA-STLSIWDLAAPTPRIKAELTS  139 (337)
T ss_dssp             EEEEEC--BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEE--ECTTSSEEEEEESS-SEEEEEECCCC--EEEEEEEC
T ss_pred             EEEEEE--CCEEEEEEccCCcccceeEEeeecCCCCcEEEEE--EcCCCCEEEEeecc-ccccccccccccccccccccc
Confidence            688887  789999999876543222  12345678899999  99999999999987 99999998765433   2345


Q ss_pred             CCCCeeEEEECCCCCEEEEecCCCcEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchh
Q 014475           79 PAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEEC  158 (424)
Q Consensus        79 ~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~  158 (424)
                      |...+.+++|+|++.++++++.|+.|++|++.+++.......|...|.+++|+++++.+++++.|+.+++||++++    
T Consensus       140 ~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~~~~~~~d~~v~i~d~~~~----  215 (337)
T d1gxra_         140 SAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREG----  215 (337)
T ss_dssp             SSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT----
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc----
Confidence            7889999999999999999999999999999999999999999999999999999999999999999999999653    


Q ss_pred             cccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeeecCcceeEEEECCCCCEEEEEeC
Q 014475          159 ESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSR  238 (424)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~  238 (424)
                             ..+.. ..|...|.+++|+|++  +.+++++.|+.+++||+++++......|...|.+++|+|++++|++++.
T Consensus       216 -------~~~~~-~~~~~~i~~l~~~~~~--~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~v~~s~~g~~l~s~s~  285 (337)
T d1gxra_         216 -------RQLQQ-HDFTSQIFSLGYCPTG--EWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGK  285 (337)
T ss_dssp             -------EEEEE-EECSSCEEEEEECTTS--SEEEEEETTSCEEEEETTSSCEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred             -------eeecc-cccccceEEEEEcccc--cccceeccccccccccccccccccccccccccceEEECCCCCEEEEEeC
Confidence                   22333 3478899999999988  8999999999999999999988877779999999999999999999999


Q ss_pred             CCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeC
Q 014475          239 DGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDP  297 (424)
Q Consensus       239 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~  297 (424)
                      ||.|++||+.++.         .+.. ..|...|.+++|+| +++|++|+.||+|+|||+
T Consensus       286 Dg~i~iwd~~~~~---------~~~~-~~~~~~v~~~~~s~d~~~l~t~s~D~~I~vWdl  335 (337)
T d1gxra_         286 DNLLNAWRTPYGA---------SIFQ-SKESSSVLSCDISVDDKYIVTGSGDKKATVYEV  335 (337)
T ss_dssp             TSEEEEEETTTCC---------EEEE-EECSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred             CCeEEEEECCCCC---------EEEE-ccCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEE
Confidence            9999999998863         3333 35889999999999 999999999999999996

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=4.8e-40  Score=296.79  Aligned_cols=285  Identities=11%  Similarity=0.099  Sum_probs=230.2

Q ss_pred             CCCceEEecceeecCCCccccCCCCceeEEEEECCCCcee---eeecCCCCeeEEEECCCCCEEEEecCCCcEEEEEccC
Q 014475           35 PPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVE---VKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVAS  111 (424)
Q Consensus        35 ~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~---~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~  111 (424)
                      ...+|+|++  |+|+++++|+++.+ |.|++||.++++..   ....|.++|.+++|+|++++|++|+.|+.|++||+.+
T Consensus         6 ~~~pIt~~~--~s~dg~~la~~~~~-~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~   82 (371)
T d1k8kc_           6 LVEPISCHA--WNKDRTQIAICPNN-HEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKG   82 (371)
T ss_dssp             CSSCCCEEE--ECTTSSEEEEECSS-SEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEET
T ss_pred             CCCCeEEEE--ECCCCCEEEEEeCC-CEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeecc
Confidence            456799999  99999999999887 99999999877533   2346899999999999999999999999999999987


Q ss_pred             cce--eeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCce
Q 014475          112 GRL--LKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVS  189 (424)
Q Consensus       112 ~~~--~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  189 (424)
                      +..  ...+.+|...|.+++|+|+++.|++++.|+.+++|+++...       ...........|...|.+++|+|++  
T Consensus        83 ~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~-------~~~~~~~~~~~~~~~v~~v~~~p~~--  153 (371)
T d1k8kc_          83 RTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQEN-------DWWVCKHIKKPIRSTVLSLDWHPNS--  153 (371)
T ss_dssp             TEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTT-------TEEEEEEECTTCCSCEEEEEECTTS--
T ss_pred             cccccccccccccccccccccccccccceeecccCcceeeeeeccc-------ccccccccccccccccccccccccc--
Confidence            754  44557789999999999999999999999999999986522       1122334456789999999999988  


Q ss_pred             eEEEEEeCCCcEEEEecCCCc------------------eeeeee-cCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCC
Q 014475          190 ATIVSASEDRTCKVWSLLKGR------------------LLRNIV-FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAE  250 (424)
Q Consensus       190 ~~l~~~~~d~~v~iwd~~~~~------------------~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  250 (424)
                      .+|++++.|+.+++||.....                  ...... +...+.+++|+|+++++++++.|+.|++||++.+
T Consensus       154 ~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~  233 (371)
T d1k8kc_         154 VLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKK  233 (371)
T ss_dssp             SEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGT
T ss_pred             cceeccccCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeecccccccccccCCcceEEeeecc
Confidence            899999999999999986432                  222222 6678999999999999999999999999999886


Q ss_pred             CCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCC--CcEEEE----------------------
Q 014475          251 SPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPIT--HNIVRM----------------------  305 (424)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~--~~~~~~----------------------  305 (424)
                               ..+..+..|..+|.+++|+| +.+|++| .|+.+++|....  +.....                      
T Consensus       234 ---------~~~~~~~~~~~~v~s~~fs~d~~~la~g-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (371)
T d1k8kc_         234 ---------MAVATLASETLPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQN  303 (371)
T ss_dssp             ---------TEEEEEECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHH
T ss_pred             ---------cceeeeecccccceeeeecCCCCEEEEE-cCCceEEEEeeCCCceEEEeeeecCccccccccccceeeEec
Confidence                     55777888999999999999 6666655 477766665332  221100                      


Q ss_pred             -----------------EeccCCCeeEEEEEecC----ceeeeccCCCceeeccCCC
Q 014475          306 -----------------FRLAKGPVNNILVVRRP----LYLNLGSFSNPHTSSRRHG  341 (424)
Q Consensus       306 -----------------~~~~~~~v~~l~~s~~~----~~l~~~~~d~~i~iw~~~~  341 (424)
                                       ...|.+.|+++++.+.+    ..++|++.||.|++|++++
T Consensus       304 ~~~~~~~~~~~~~~~~~~~~H~~~I~~i~~~~~~~~~~~~~~T~g~Dg~v~iW~~~~  360 (371)
T d1k8kc_         304 LDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRS  360 (371)
T ss_dssp             CCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHH
T ss_pred             ccceeEEeccccccceecccccCCEEEEEEeCCCCcceEEEEEEcCCCeEEEEeCCc
Confidence                             01388899999999865    3588999999999999864

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=2.4e-39  Score=284.41  Aligned_cols=263  Identities=17%  Similarity=0.208  Sum_probs=223.2

Q ss_pred             EeecCCCCCceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCceee---eecCCC
Q 014475            5 IASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEV---KSLPAE   81 (424)
Q Consensus         5 lat~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~---~~~~~~   81 (424)
                      ||.+.  ++.|.+||+.+++..+.+.+|   ...|.+++  |+|+|++|++++.| |+|++||+.+.....   ...|.+
T Consensus        32 l~~~~--~~~v~i~~~~~~~~~~~~~~H---~~~v~~~~--~sp~g~~latg~~d-g~i~iwd~~~~~~~~~~~~~~~~~  103 (311)
T d1nr0a1          32 IQYCN--GTSVYTVPVGSLTDTEIYTEH---SHQTTVAK--TSPSGYYCASGDVH-GNVRIWDTTQTTHILKTTIPVFSG  103 (311)
T ss_dssp             EEEEE--TTEEEEEETTCSSCCEEECCC---SSCEEEEE--ECTTSSEEEEEETT-SEEEEEESSSTTCCEEEEEECSSS
T ss_pred             EEEEe--CCEEEEEECCCCceeEEEcCC---CCCEEEEE--EeCCCCeEeccccC-ceEeeeeeeccccccccccccccC
Confidence            44444  457999999999998888654   46799999  99999999999998 999999998776432   345789


Q ss_pred             CeeEEEECCCCCEEEEecC--CCcEEEEEccCcceeeeeccccCCeEEEEEccCCcE-EEEeeCCCcEEEEeCCcccchh
Q 014475           82 PIKPIAANSHGTYIAGGGQ--SGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSF-LISGSEDGCVRIWSLLTVFEEC  158 (424)
Q Consensus        82 ~v~~~~~s~~~~~l~~~~~--dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~-l~s~~~dg~i~iwd~~~~~~~~  158 (424)
                      +|.+++|+|++++|++++.  +..+++|++++++....+.+|...|++++|+|++++ |++|+.||.|++||+++     
T Consensus       104 ~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~-----  178 (311)
T d1nr0a1         104 PVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPP-----  178 (311)
T ss_dssp             CEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTT-----
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccceeeecccccccccccccccc-----
Confidence            9999999999999999875  456999999999999999999999999999998875 78899999999999965     


Q ss_pred             cccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeee--------cCcceeEEEECCCC
Q 014475          159 ESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV--------FPSVIDAIALDPAE  230 (424)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~--------~~~~i~~~~~~~~~  230 (424)
                            .........|..+|+++.++|++  +++++++.|+.|++||+++++....+.        |...|.+++|+|++
T Consensus       179 ------~~~~~~~~~~~~~i~~v~~~p~~--~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~  250 (311)
T d1nr0a1         179 ------FKFKSTFGEHTKFVHSVRYNPDG--SLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDG  250 (311)
T ss_dssp             ------BEEEEEECCCSSCEEEEEECTTS--SEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTS
T ss_pred             ------cccccccccccccccccccCccc--cccccccccccccccccccccccccccccccccccccccccccccCCCC
Confidence                  34566778899999999999988  899999999999999999888776654        46789999999999


Q ss_pred             CEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccC---cCeEEEEecCCCEEEEeCCCCcEEEEeCC
Q 014475          231 HVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHS---KAVTCLAYSTGDLLISGSEDGMVRVWDPI  298 (424)
Q Consensus       231 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~---~~i~~~~~~~~~~l~t~~~dg~i~iwd~~  298 (424)
                      ++|++|+.||.|++||++++         +++..+..|.   ..+.++.|+ ++.|++++.||.|++||++
T Consensus       251 ~~l~tgs~Dg~v~iwd~~t~---------~~~~~l~~~~~~~~~~~~~~~~-~~~l~s~s~dG~i~~wd~d  311 (311)
T d1nr0a1         251 TKIASASADKTIKIWNVATL---------KVEKTIPVGTRIEDQQLGIIWT-KQALVSISANGFINFVNPE  311 (311)
T ss_dssp             SEEEEEETTSEEEEEETTTT---------EEEEEEECCSSGGGCEEEEEEC-SSCEEEEETTCCEEEEETT
T ss_pred             CEEEEEeCCCeEEEEECCCC---------cEEEEEECCCCccceEEEEEec-CCEEEEEECCCEEEEEeCC
Confidence            99999999999999999886         5566665543   344455554 6788999999999999974

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=1.2e-38  Score=278.78  Aligned_cols=286  Identities=14%  Similarity=0.136  Sum_probs=226.7

Q ss_pred             CceEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCceeee--ecCCCCeeEEEECCCCCEEEEecC
Q 014475           23 GAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVK--SLPAEPIKPIAANSHGTYIAGGGQ  100 (424)
Q Consensus        23 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~--~~~~~~v~~~~~s~~~~~l~~~~~  100 (424)
                      |+..+.+++|   ...|.+++  |+|++++|++++.| |+|++||+++++....  ..|...|++++|+|++++++ ++.
T Consensus         2 g~~~~~~~GH---~~~V~~l~--~s~dg~~l~s~s~D-g~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~~~~-~~~   74 (299)
T d1nr0a2           2 GSIDQVRYGH---NKAITALS--SSADGKTLFSADAE-GHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFT-VSW   74 (299)
T ss_dssp             TEEEEEECCC---SSCEEEEE--ECTTSSEEEEEETT-SCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEE-EET
T ss_pred             CccceEcCCC---CCCcEEEE--ECCCCCEEEEEcCC-CeEEEEECCCCcEEEEEcCCCCCcEEEEEeeccceeec-ccc
Confidence            5667777765   46799999  99999999999988 9999999998776543  35788999999999998655 556


Q ss_pred             CCcEEEEEccCcce---eeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCc
Q 014475          101 SGDIYMWEVASGRL---LKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLR  177 (424)
Q Consensus       101 dg~v~iwd~~~~~~---~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (424)
                      |+.+++|+......   ......+...+.+++|+|+++.+++++ ++.+++|+....             ...  .....
T Consensus        75 d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~-~~~i~~~~~~~~-------------~~~--~~~~~  138 (299)
T d1nr0a2          75 DDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAAC-YKHIAIYSHGKL-------------TEV--PISYN  138 (299)
T ss_dssp             TTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEE-SSEEEEEETTEE-------------EEE--ECSSC
T ss_pred             eeeEEEeccCCccccccccccccccccccccccccccccccccc-cccccccccccc-------------ccc--ccccc
Confidence            89999999865432   223345778899999999998777665 568999997431             111  13345


Q ss_pred             eeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceee--eeecCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCC
Q 014475          178 ITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLR--NIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTS  255 (424)
Q Consensus       178 i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~--~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~  255 (424)
                      +.+++++|++  +++++++.|+.|++||+++++...  ...|...|.+++|+|++.++++++.|+.|++||+.++...  
T Consensus       139 ~~~~~~s~~~--~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~--  214 (299)
T d1nr0a2         139 SSCVALSNDK--QFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFEL--  214 (299)
T ss_dssp             EEEEEECTTS--CEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEE--
T ss_pred             cccccccccc--cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc--
Confidence            6788999988  899999999999999998876543  3448899999999999999999999999999999876421  


Q ss_pred             CcCceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCCCcEEEEE--eccC-CCeeEEEEEecCceeeeccCC
Q 014475          256 SYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMF--RLAK-GPVNNILVVRRPLYLNLGSFS  331 (424)
Q Consensus       256 ~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~~~~~--~~~~-~~v~~l~~s~~~~~l~~~~~d  331 (424)
                          .....+.+|..+|++++|+| +.+|++|+.||.|++||++++.....+  ..|. ..+..+.| +++.+|++++.|
T Consensus       215 ----~~~~~~~~h~~~v~~l~~s~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s~s~D  289 (299)
T d1nr0a2         215 ----AHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIW-LNETTIVSAGQD  289 (299)
T ss_dssp             ----SCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEE-EETTEEEEEETT
T ss_pred             ----cccccccccccccccccccccccceEEEcCCCEEEEEECCCCCcceEEEecCCCCCcEEEEEE-CCCCEEEEEeCC
Confidence                22345677999999999999 999999999999999999887544333  2333 45666654 667899999999


Q ss_pred             CceeeccCC
Q 014475          332 NPHTSSRRH  340 (424)
Q Consensus       332 ~~i~iw~~~  340 (424)
                      +.|++||++
T Consensus       290 ~~i~iWdl~  298 (299)
T d1nr0a2         290 SNIKFWNVP  298 (299)
T ss_dssp             SCEEEEECC
T ss_pred             CEEEEEecc
Confidence            999999974

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.3e-38  Score=279.83  Aligned_cols=267  Identities=22%  Similarity=0.370  Sum_probs=239.7

Q ss_pred             EEEeecCCCCCceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCceee-eecCCC
Q 014475            3 LLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEV-KSLPAE   81 (424)
Q Consensus         3 ~~lat~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~-~~~~~~   81 (424)
                      .+||||+ .||+|+|||+++++.+.+++.|   ...|.+++  |+|++.+++++..+ +.+.+|+....+... ...+..
T Consensus        30 ~~l~s~s-~Dg~i~iWd~~~~~~~~~~~~h---~~~V~~~~--~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  102 (317)
T d1vyhc1          30 SVMVSAS-EDATIKVWDYETGDFERTLKGH---TDSVQDIS--FDHSGKLLASCSAD-MTIKLWDFQGFECIRTMHGHDH  102 (317)
T ss_dssp             SEEEEEE-SSSCEEEEETTTCCCCEEECCC---SSCEEEEE--ECTTSSEEEEEETT-SCCCEEETTSSCEEECCCCCSS
T ss_pred             CEEEEEe-CCCeEEEEECCCCCEEEEEeCC---CCcEEEEe--eecccccccccccc-cccccccccccccccccccccc
Confidence            4789999 9999999999999999998765   46788888  99999999999887 999999988766553 355788


Q ss_pred             CeeEEEECCCCCEEEEecCCCcEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhccc
Q 014475           82 PIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQ  161 (424)
Q Consensus        82 ~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~  161 (424)
                      .+.++.|+|+++.+++++.|+.+++||+++++....+.+|...+.+++|+|++++|++++.|+.|++|++.+        
T Consensus       103 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~~~~~~~--------  174 (317)
T d1vyhc1         103 NVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVAT--------  174 (317)
T ss_dssp             CEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT--------
T ss_pred             cceeeeccCCCceEEeeccCcceeEeecccceeeeEEccCCCcceeeecccCCCEEEEEeCCCeEEEEeecc--------
Confidence            999999999999999999999999999999999999999999999999999999999999999999999955        


Q ss_pred             ccccceEEeecCCcCceeEEEEEEcCc------------------eeEEEEEeCCCcEEEEecCCCceeeeee-cCccee
Q 014475          162 RASHLYLHSFTGHTLRITDIVIGYGGV------------------SATIVSASEDRTCKVWSLLKGRLLRNIV-FPSVID  222 (424)
Q Consensus       162 ~~~~~~~~~~~~~~~~i~~~~~~~~~~------------------~~~l~~~~~d~~v~iwd~~~~~~~~~~~-~~~~i~  222 (424)
                         ......+..|...+.++.++++..                  +..+++++.|+.|++||+++++++..+. |...|.
T Consensus       175 ---~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~v~  251 (317)
T d1vyhc1         175 ---KECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVR  251 (317)
T ss_dssp             ---CCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEE
T ss_pred             ---ceeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCCCcEEEEEeCCCCCEE
Confidence               345666778888888888876531                  2578999999999999999999988887 789999


Q ss_pred             EEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEe
Q 014475          223 AIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWD  296 (424)
Q Consensus       223 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd  296 (424)
                      +++++|++++|++|+.||.|++||++++         +++..+.+|..+|++++|+| +++|++|+.||+|+|||
T Consensus       252 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~---------~~~~~~~~h~~~V~~~~~s~~~~~l~s~s~Dg~i~iWd  317 (317)
T d1vyhc1         252 GVLFHSGGKFILSCADDKTLRVWDYKNK---------RCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE  317 (317)
T ss_dssp             EEEECSSSSCEEEEETTTEEEEECCTTS---------CCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred             EEEECCCCCEEEEEECCCeEEEEECCCC---------cEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEeC
Confidence            9999999999999999999999999886         56778889999999999999 99999999999999997

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=2.1e-38  Score=286.02  Aligned_cols=252  Identities=14%  Similarity=0.081  Sum_probs=214.5

Q ss_pred             cCCCCeeEEEECCCCCEEEEecCCCcEEEEEccCcc--eeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCccc
Q 014475           78 LPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGR--LLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVF  155 (424)
Q Consensus        78 ~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~--~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~  155 (424)
                      ...+||+|++|+|++++||+|+.||.|+|||..+++  .+..+++|.++|.+++|+|++++|++|+.|+.|++||+.+  
T Consensus         5 ~~~~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~--   82 (371)
T d1k8kc_           5 FLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKG--   82 (371)
T ss_dssp             SCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEET--
T ss_pred             CCCCCeEEEEECCCCCEEEEEeCCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeecc--
Confidence            456899999999999999999999999999998775  5677889999999999999999999999999999999965  


Q ss_pred             chhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeee-----cCcceeEEEECCCC
Q 014475          156 EECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-----FPSVIDAIALDPAE  230 (424)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~-----~~~~i~~~~~~~~~  230 (424)
                             ........+.+|...|.+++|+|++  +.|++++.|+.+++|++..........     +...|.+++|+|++
T Consensus        83 -------~~~~~~~~~~~~~~~v~~i~~~p~~--~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~  153 (371)
T d1k8kc_          83 -------RTWKPTLVILRINRAARCVRWAPNE--KKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNS  153 (371)
T ss_dssp             -------TEEEEEEECCCCSSCEEEEEECTTS--SEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTS
T ss_pred             -------ccccccccccccccccccccccccc--ccceeecccCcceeeeeecccccccccccccccccccccccccccc
Confidence                   2333455667889999999999998  899999999999999987665433222     56789999999999


Q ss_pred             CEEEEEeCCCcEEEEEcCCCCCCCCC---------cCceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCCC
Q 014475          231 HVFYAGSRDGSIYIAALNAESPSTSS---------YGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITH  300 (424)
Q Consensus       231 ~~l~~~~~dg~i~i~d~~~~~~~~~~---------~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~  300 (424)
                      ++|++|+.|+.+++|+..........         ...........|...|.+++|+| +++|++++.|+.|++||+.++
T Consensus       154 ~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~  233 (371)
T d1k8kc_         154 VLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKK  233 (371)
T ss_dssp             SEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGT
T ss_pred             cceeccccCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeecccccccccccCCcceEEeeecc
Confidence            99999999999999998765422111         11234566678999999999999 999999999999999999999


Q ss_pred             cEEEEEeccCCCeeEEEEEecCceeeeccCCCceeeccCCC
Q 014475          301 NIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHG  341 (424)
Q Consensus       301 ~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~d~~i~iw~~~~  341 (424)
                      +.+..+..|..+|.+++|+|++++|++|+ |+.+++|....
T Consensus       234 ~~~~~~~~~~~~v~s~~fs~d~~~la~g~-d~~~~~~~~~~  273 (371)
T d1k8kc_         234 MAVATLASETLPLLAVTFITESSLVAAGH-DCFPVLFTYDS  273 (371)
T ss_dssp             TEEEEEECSSCCEEEEEEEETTEEEEEET-TSSCEEEEEET
T ss_pred             cceeeeecccccceeeeecCCCCEEEEEc-CCceEEEEeeC
Confidence            99999999999999999999998888765 77777776554

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=4e-38  Score=281.37  Aligned_cols=299  Identities=16%  Similarity=0.242  Sum_probs=238.0

Q ss_pred             EEEeecCCCCCceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCceeeeecC---
Q 014475            3 LLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSLP---   79 (424)
Q Consensus         3 ~~lat~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~~~~---   79 (424)
                      .+||||+ .||+|+|||+.+++.+.++++|.   ..|.+++  |+|+ .++++++.| |.|++|+....+.......   
T Consensus        24 ~~l~tgs-~Dg~i~vWd~~~~~~~~~l~~H~---~~V~~l~--~s~~-~~l~s~s~D-~~i~iw~~~~~~~~~~~~~~~~   95 (355)
T d1nexb2          24 NYVITGA-DDKMIRVYDSINKKFLLQLSGHD---GGVWALK--YAHG-GILVSGSTD-RTVRVWDIKKGCCTHVFEGHNS   95 (355)
T ss_dssp             TEEEEEE-TTTEEEEEETTTTEEEEEEECCS---SCEEEEE--EETT-TEEEEEETT-CCEEEEETTTTEEEEEECCCSS
T ss_pred             CEEEEEe-CCCeEEEEECCCCcEEEEEECCC---CCEEEEE--EcCC-CEEEEEecc-cccccccccccccccccccccc
Confidence            3799999 99999999999999999998754   6688888  9886 578888887 9999999998876544332   


Q ss_pred             CCCeeEEEECCCCCEEEEecCCCcEEEEEccCcceeeee-----------------------ccccCCeEEEEEccCCcE
Q 014475           80 AEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKW-----------------------HAHYRAVTCLVFSEDGSF  136 (424)
Q Consensus        80 ~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~-----------------------~~~~~~i~~~~~~~~~~~  136 (424)
                      ........+++++.++++++.|+.|++||+.+.......                       ..|...+.  .+.++++.
T Consensus        96 ~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~~~~~~~  173 (355)
T d1nexb2          96 TVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVR--TVSGHGNI  173 (355)
T ss_dssp             CEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEECCSSCEE--EEEEETTE
T ss_pred             cccccccccccccceeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceeeeeeecccccc--ccccccce
Confidence            334566778899999999999999999999776433221                       12333333  34456889


Q ss_pred             EEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeee
Q 014475          137 LISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV  216 (424)
Q Consensus       137 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~  216 (424)
                      ++++..|+.+++||+++           ...+....++...+.++.+++.+  ..+++++.|+.|++||++++..+..+.
T Consensus       174 ~~~~~~d~~i~~~d~~~-----------~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~d~~i~i~d~~~~~~~~~~~  240 (355)
T d1nexb2         174 VVSGSYDNTLIVWDVAQ-----------MKCLYILSGHTDRIYSTIYDHER--KRCISASMDTTIRIWDLENGELMYTLQ  240 (355)
T ss_dssp             EEEEETTSCEEEEETTT-----------TEEEEEECCCSSCEEEEEEETTT--TEEEEEETTSCEEEEETTTCCEEEEEC
T ss_pred             eeeecccceeeeeeccc-----------ccceeeeeccccccccccccccc--eeeecccccceEEeeeccccccccccc
Confidence            99999999999999955           34566677888899999999988  899999999999999999999888887


Q ss_pred             -cCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEe-cC-CCEEEEeCCCCcEE
Q 014475          217 -FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAY-ST-GDLLISGSEDGMVR  293 (424)
Q Consensus       217 -~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~-~~~l~t~~~dg~i~  293 (424)
                       |...|.+++++  ++++++++.||.|++||+++..           ..+..|...+.++.+ ++ +.++++ +.||.|+
T Consensus       241 ~h~~~v~~~~~~--~~~l~~~~~dg~i~iwd~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~l~~-g~d~~i~  306 (355)
T d1nexb2         241 GHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYS-----------RKFSYHHTNLSAITTFYVSDNILVS-GSENQFN  306 (355)
T ss_dssp             CCSSCCCEEEEC--SSEEEEECTTSEEEEEETTTCC-----------EEEEEECTTCCCCCEEEECSSEEEE-EETTEEE
T ss_pred             cccccccccccc--cceeeeeecccccccccccccc-----------eecccccCCceEEEEEcCCCCEEEE-EeCCEEE
Confidence             78899999986  4789999999999999998753           234456666766654 44 555554 5689999


Q ss_pred             EEeCCCCcEEE-EEeccCCCeeEEEEEecCceeeeccCCCceeeccC
Q 014475          294 VWDPITHNIVR-MFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRR  339 (424)
Q Consensus       294 iwd~~~~~~~~-~~~~~~~~v~~l~~s~~~~~l~~~~~d~~i~iw~~  339 (424)
                      +||+++++++. .+.+|.++|.+++|+|+ ..+++++.||.+++|..
T Consensus       307 vwd~~tg~~~~~~~~~~~~~V~~v~~~~~-~~~~~~s~dg~~~l~~~  352 (355)
T d1nexb2         307 IYNLRSGKLVHANILKDADQIWSVNFKGK-TLVAAVEKDGQSFLEIL  352 (355)
T ss_dssp             EEETTTCCBCCSCTTTTCSEEEEEEEETT-EEEEEEESSSCEEEEEE
T ss_pred             EEECCCCCEEEEEecCCCCCEEEEEEcCC-eEEEEEECCCcEEEEEE
Confidence            99999999885 46789999999999987 47888999999777654

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3.8e-37  Score=279.30  Aligned_cols=274  Identities=20%  Similarity=0.299  Sum_probs=221.6

Q ss_pred             EEeecCCCCCceEEEeCCCCceEEEeeCCC---------------CCCCceEEecceeecCCCccccCCCCceeEEEEEC
Q 014475            4 LIASSSVADTGIGCWDLESGAEQLRYKSCA---------------SPPHGLACVGQRFLASSQLREQPSASSGSILYWSW   68 (424)
Q Consensus         4 ~lat~~~~dg~i~vwd~~~~~~~~~~~~~~---------------~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~   68 (424)
                      +||+|+  |++|+|||+.+++.+.++..+.               .+...|.+++  |+|++++|++++.| |.|++|+.
T Consensus        76 ~lasg~--d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~--~s~~~~~l~s~~~d-g~v~i~~~  150 (388)
T d1erja_          76 YLATGC--NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVC--FSPDGKFLATGAED-RLIRIWDI  150 (388)
T ss_dssp             EEEEEC--BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEE--ECTTSSEEEEEETT-SCEEEEET
T ss_pred             EEEEEe--CCeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEE--ECCCCCcceecccc-cccccccc
Confidence            688876  8899999999999988776442               3556688999  99999999999998 99999999


Q ss_pred             CCCceeee-ecCCCCeeEEEECCCCCEEEEecCCCcEEEEEccCcceeeeeccccCCeEEEEEcc-CCcEEEEeeCCCcE
Q 014475           69 SKPQVEVK-SLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSE-DGSFLISGSEDGCV  146 (424)
Q Consensus        69 ~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~s~~~dg~i  146 (424)
                      ..++.... ..|...|.++++++++..+++++.++.+++||.++.........+.. ..++.+.+ ++++|++++.||.|
T Consensus       151 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~d~~i  229 (388)
T d1erja_         151 ENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDG-VTTVAVSPGDGKYIAAGSLDRAV  229 (388)
T ss_dssp             TTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSC-EEEEEECSTTCCEEEEEETTSCE
T ss_pred             cccccccccccccccccccccccccccccccccceeeeeeeccccccccccccccc-cccccccCCCCCeEEEEcCCCeE
Confidence            88776544 45889999999999999999999999999999998887777665544 45555554 88999999999999


Q ss_pred             EEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceee-------------
Q 014475          147 RIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLR-------------  213 (424)
Q Consensus       147 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~-------------  213 (424)
                      ++||.+++......    ........+|...|.+++|++++  .+|++++.|+.|++||+++++...             
T Consensus       230 ~i~~~~~~~~~~~~----~~~~~~~~~h~~~v~~l~~s~~~--~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~  303 (388)
T d1erja_         230 RVWDSETGFLVERL----DSENESGTGHKDSVYSVVFTRDG--QSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVT  303 (388)
T ss_dssp             EEEETTTCCEEEEE----C------CCCSSCEEEEEECTTS--SEEEEEETTSEEEEEEC---------------CEEEE
T ss_pred             EEeecccCccceee----ccccccccCCCCCEEEEEECCCC--CEEEEEECCCcEEEEeccCCccccccccccccceeee
Confidence            99999764332111    11122345789999999999988  899999999999999997654322             


Q ss_pred             eeecCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEe------cC-CCEEEEe
Q 014475          214 NIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAY------ST-GDLLISG  286 (424)
Q Consensus       214 ~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~------~~-~~~l~t~  286 (424)
                      ...|...|.+++|+|++++|++|+.||.|++||++++         +++..+.+|...|+++++      +| +.+|++|
T Consensus       304 ~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~---------~~~~~l~~H~~~V~~~~~~~~~~~spd~~~l~s~  374 (388)
T d1erja_         304 YIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSG---------NPLLMLQGHRNSVISVAVANGSSLGPEYNVFATG  374 (388)
T ss_dssp             EECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTC---------CEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEE
T ss_pred             cccccceEEEEEECCCCCEEEEEeCCCEEEEEECCCC---------cEEEEEeCCCCCEEEEEEecCcccCCCCCEEEEE
Confidence            1226778999999999999999999999999999986         667889999999999975      55 7899999


Q ss_pred             CCCCcEEEEeCC
Q 014475          287 SEDGMVRVWDPI  298 (424)
Q Consensus       287 ~~dg~i~iwd~~  298 (424)
                      +.||+|+||+++
T Consensus       375 s~Dg~I~iW~~~  386 (388)
T d1erja_         375 SGDCKARIWKYK  386 (388)
T ss_dssp             ETTSEEEEEEEE
T ss_pred             eCCCEEEEEeee
Confidence            999999999974

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.7e-36  Score=268.26  Aligned_cols=279  Identities=13%  Similarity=0.133  Sum_probs=221.8

Q ss_pred             ceEEecceeecCCCccccCCCCceeEEEEECCCCce---eeeecC-CCCeeEEEECC--CCCEEEEecCCCcEEEEEccC
Q 014475           38 GLACVGQRFLASSQLREQPSASSGSILYWSWSKPQV---EVKSLP-AEPIKPIAANS--HGTYIAGGGQSGDIYMWEVAS  111 (424)
Q Consensus        38 ~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~---~~~~~~-~~~v~~~~~s~--~~~~l~~~~~dg~v~iwd~~~  111 (424)
                      .+++++  |+|+++.++.++.+...|+.|+......   .....| ...|++++|+|  ++.+|++|+.||+|+|||+..
T Consensus        19 ~~t~l~--~~~~~~~la~~~~~~~~i~~~~~~~~~~~~~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~   96 (325)
T d1pgua1          19 FTTHLS--YDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTF   96 (325)
T ss_dssp             CCCCCE--EETTTTEEEEEETTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEE
T ss_pred             CeEEEE--ECCCCCEEEEEeCCCEEEEEEeCCCCCccceEEEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecC
Confidence            355667  9999999998876545567777544332   222334 57899999998  678999999999999999976


Q ss_pred             cceee--------eeccccCCeEEEEEccCCcEEEEeeC--CCcEEEEeCCcccchhcccccccceEEeecCCcCceeEE
Q 014475          112 GRLLK--------KWHAHYRAVTCLVFSEDGSFLISGSE--DGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDI  181 (424)
Q Consensus       112 ~~~~~--------~~~~~~~~i~~~~~~~~~~~l~s~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  181 (424)
                      ++...        .+..|.++|.+++|+++++++++++.  ++.+++|+.++           ...+..+.+|...|+++
T Consensus        97 ~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~h~~~v~~~  165 (325)
T d1pgua1          97 DKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDS-----------GNSLGEVSGHSQRINAC  165 (325)
T ss_dssp             EGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTT-----------CCEEEECCSCSSCEEEE
T ss_pred             CcceeeeecccccccccccCcEEEEEECCCCCccceeeccccceEEEEeecc-----------cccceeeeecccccccc
Confidence            64432        23568889999999999999887764  67899999854           34567788999999999


Q ss_pred             EEEEcCceeEEEEEeCCCcEEEEecCCCceeeeee----cCcceeEEEECCC-CCEEEEEeCCCcEEEEEcCCCCCCCCC
Q 014475          182 VIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV----FPSVIDAIALDPA-EHVFYAGSRDGSIYIAALNAESPSTSS  256 (424)
Q Consensus       182 ~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~----~~~~i~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~  256 (424)
                      +|++++. ..+++++.|+.+++||....+......    +...|.+++|+|+ +.++++++.|+.|++||++++      
T Consensus       166 ~~~~~~~-~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~------  238 (325)
T d1pgua1         166 HLKQSRP-MRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSG------  238 (325)
T ss_dssp             EECSSSS-CEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTC------
T ss_pred             ccccccc-ceEEEeecccccccccccccccceecccccCCCCccEEeeeccccceeccccccccceeeeeeccc------
Confidence            9999874 467889999999999998877666554    5677999999996 688999999999999999886      


Q ss_pred             cCceeeeeecccCcCeEEEE----ecCCCEEEEeCCCCcEEEEeCCCCcEEEEEeccCCC--eeEEEEEec-Cceeeecc
Q 014475          257 YGMHIIGSLSDHSKAVTCLA----YSTGDLLISGSEDGMVRVWDPITHNIVRMFRLAKGP--VNNILVVRR-PLYLNLGS  329 (424)
Q Consensus       257 ~~~~~~~~~~~~~~~i~~~~----~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~--v~~l~~s~~-~~~l~~~~  329 (424)
                         +.+..+.+|..++..+.    +.++++|++++.|+.|+|||++++++++.+..|...  +..+++.+. +.+|++++
T Consensus       239 ---~~~~~l~~~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s  315 (325)
T d1pgua1         239 ---EFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLS  315 (325)
T ss_dssp             ---CEEEECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEE
T ss_pred             ---cccccccccccccccceeeeeccCCCEEEEEeCCCeEEEEECCCCCEEEEEEecCCcccCeEEEEEECCCCEEEEEE
Confidence               55677777777665444    444889999999999999999999999998877654  444555443 34789999


Q ss_pred             CCCceeeccC
Q 014475          330 FSNPHTSSRR  339 (424)
Q Consensus       330 ~d~~i~iw~~  339 (424)
                      .||.|++||+
T Consensus       316 ~dg~i~vwdl  325 (325)
T d1pgua1         316 LDGTLNFYEL  325 (325)
T ss_dssp             TTSCEEEEET
T ss_pred             CCCEEEEEEC
Confidence            9999999985

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.7e-35  Score=261.48  Aligned_cols=302  Identities=22%  Similarity=0.389  Sum_probs=240.4

Q ss_pred             EEEeecCCCCCceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCceeeeec-CCC
Q 014475            3 LLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSL-PAE   81 (424)
Q Consensus         3 ~~lat~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~~~-~~~   81 (424)
                      .+||||+ .||+|+|||++++++++++.+|.   ..|.+++  |+++  ++++++.| +.+++|+........... +..
T Consensus        28 ~~l~sgs-~Dg~i~vWd~~~~~~~~~~~~h~---~~V~~v~--~~~~--~l~s~s~D-~~~~~~~~~~~~~~~~~~~~~~   98 (342)
T d2ovrb2          28 NRIVSGS-DDNTLKVWSAVTGKCLRTLVGHT---GGVWSSQ--MRDN--IIISGSTD-RTLKVWNAETGECIHTLYGHTS   98 (342)
T ss_dssp             TEEEEEE-TTSCEEEEETTTCCEEEECCCCS---SCEEEEE--EETT--EEEEEETT-SCEEEEETTTTEEEEEECCCSS
T ss_pred             CEEEEEe-CCCeEEEEECCCCCEEEEEeCCC---CCEEEEE--eCCC--ccccceec-ccccccccccccceecccccce
Confidence            3689999 99999999999999999887654   6788888  8764  88888887 999999998876654443 344


Q ss_pred             CeeEEEECCCCCEEEEecCCCcEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhccc
Q 014475           82 PIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQ  161 (424)
Q Consensus        82 ~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~  161 (424)
                      .+.....  ....++.+..|+.+.+|+..+++....+..+......  ..+....+++++.|+.+++||.+.        
T Consensus        99 ~~~~~~~--~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~d~~i~~~d~~~--------  166 (342)
T d2ovrb2          99 TVRCMHL--HEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRC--VQYDGRRVVSGAYDFMVKVWDPET--------  166 (342)
T ss_dssp             CEEEEEE--ETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEE--EEECSSCEEEEETTSCEEEEEGGG--------
T ss_pred             eEeeeec--ccccccccccceeEEEeecccccceeeeeccccccee--eccccceeeeecCCCeEEEeeccc--------
Confidence            4554444  3456778889999999999999887777655554433  344567899999999999999843        


Q ss_pred             ccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeee-cCcceeEEEECCCCCEEEEEeCCC
Q 014475          162 RASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYAGSRDG  240 (424)
Q Consensus       162 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg  240 (424)
                         ...+..+.+|...+..+  .+++  ..+++++.||.|++||++.++++..+. +...+.++.++  ++++++++.|+
T Consensus       167 ---~~~~~~~~~~~~~~~~~--~~~~--~~l~s~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~s~d~  237 (342)
T d2ovrb2         167 ---ETCLHTLQGHTNRVYSL--QFDG--IHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELK--DNILVSGNADS  237 (342)
T ss_dssp             ---TEEEEEECCCSSCEEEE--EECS--SEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEE--TTEEEEEETTS
T ss_pred             ---ceeeEEEcCcccccccc--cCCC--CEEEEEeCCCeEEEeecccceeeeEecccccceeEEecC--CCEEEEEcCCC
Confidence               44566777787766554  4556  789999999999999999999888777 67777777665  56999999999


Q ss_pred             cEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecCCCEEEEeCCCCcEEEEeCCCCcEEEEEe-----ccCCCeeE
Q 014475          241 SIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTGDLLISGSEDGMVRVWDPITHNIVRMFR-----LAKGPVNN  315 (424)
Q Consensus       241 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~-----~~~~~v~~  315 (424)
                      .|++||+......      ........|...+.++.++ ++++++|+.||.|++||++++++++.+.     +|.++|++
T Consensus       238 ~i~iwd~~~~~~~------~~~~~~~~~~~~~~~~~~~-~~~~~s~s~Dg~i~iwd~~tg~~i~~~~~~~~~~~~~~v~~  310 (342)
T d2ovrb2         238 TVKIWDIKTGQCL------QTLQGPNKHQSAVTCLQFN-KNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWR  310 (342)
T ss_dssp             CEEEEETTTCCEE------EEECSTTSCSSCEEEEEEC-SSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEE
T ss_pred             EEEEEeccccccc------ccccccceeeeceeecccC-CCeeEEEcCCCEEEEEECCCCCEEEEEecccCCCCCCCEEE
Confidence            9999999886411      2223334567778888776 5799999999999999999999998875     56778999


Q ss_pred             EEEEecCceeeeccCCCc----eeeccCCC
Q 014475          316 ILVVRRPLYLNLGSFSNP----HTSSRRHG  341 (424)
Q Consensus       316 l~~s~~~~~l~~~~~d~~----i~iw~~~~  341 (424)
                      ++|+|++.+|++|+.||+    |++||++.
T Consensus       311 v~~s~~~~~la~g~~dGt~~~~l~~~Df~~  340 (342)
T d2ovrb2         311 IRASNTKLVCAVGSRNGTEETKLLVLDFDV  340 (342)
T ss_dssp             EEECSSEEEEEEECSSSSSCCEEEEEECCC
T ss_pred             EEECCCCCEEEEEeCCCCCeeEEEEEeCCC
Confidence            999999999999999986    99999863

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=6.1e-35  Score=259.31  Aligned_cols=264  Identities=18%  Similarity=0.299  Sum_probs=228.0

Q ss_pred             EEEeecCCCCCceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCceee-----ee
Q 014475            3 LLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEV-----KS   77 (424)
Q Consensus         3 ~~lat~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~-----~~   77 (424)
                      .+||||+ .||+|+|||+.+++.+..+..|.   ..|.+++  |+|+++++++++.+ +.+.+|+........     ..
T Consensus        68 ~~l~sgs-~Dg~v~iWd~~~~~~~~~~~~~~---~~v~~v~--~~~~~~~l~~~~~d-~~i~~~~~~~~~~~~~~~~~~~  140 (340)
T d1tbga_          68 RLLVSAS-QDGKLIIWDSYTTNKVHAIPLRS---SWVMTCA--YAPSGNYVACGGLD-NICSIYNLKTREGNVRVSRELA  140 (340)
T ss_dssp             SEEEEEE-TTTEEEEEETTTTEEEEEEECSC---SCEEEEE--ECTTSSEEEEEETT-CCEEEEESSSSCSCCCEEEEEC
T ss_pred             CEEEEEE-CCCceeeeecccceeEEEEeccc---ccEEeeE--eeccceeeeeeccc-ceeecccccccccccccceecc
Confidence            4799999 99999999999999999988654   5688888  99999999999998 999999987554321     12


Q ss_pred             cCCCCeeEEEECCCCCEEEEecCCCcEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccch
Q 014475           78 LPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEE  157 (424)
Q Consensus        78 ~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~  157 (424)
                      .|.......... .+..+.....+.....+.............+...+....+.+.+.++++++.|+.|++||+++    
T Consensus       141 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~i~d~~~----  215 (340)
T d1tbga_         141 GHTGYLSCCRFL-DDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVRE----  215 (340)
T ss_dssp             CCSSCEEEEEEE-ETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTTEEEEEETTT----
T ss_pred             cccccccccccc-cccccccccccccccccccccccccccccccceeEeeeccccccceeEEeecCceEEEEECCC----
Confidence            344444444444 455677778889999999888877777778889999999999999999999999999999954    


Q ss_pred             hcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeee---cCcceeEEEECCCCCEEE
Q 014475          158 CESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV---FPSVIDAIALDPAEHVFY  234 (424)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~---~~~~i~~~~~~~~~~~l~  234 (424)
                             ...+..+.+|...|++++|+|++  .+|++++.|+.|++||++..+....+.   +...+.+++|+|++++|+
T Consensus       216 -------~~~~~~~~~h~~~i~~v~~~p~~--~~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~  286 (340)
T d1tbga_         216 -------GMCRQTFTGHESDINAICFFPNG--NAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLL  286 (340)
T ss_dssp             -------TEEEEEECCCSSCEEEEEECTTS--SEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECSSSCEEE
T ss_pred             -------CcEEEEEeCCCCCeEEEEECCCC--CEEEEEeCCCeEEEEeecccccccccccccccCceEEEEECCCCCEEE
Confidence                   44667788999999999999988  899999999999999999988877664   567799999999999999


Q ss_pred             EEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEe
Q 014475          235 AGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWD  296 (424)
Q Consensus       235 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd  296 (424)
                      +|+.||.|++||+.++         +.+..+.+|..+|++++|+| +.+|++|+.||.|+|||
T Consensus       287 ~g~~dg~i~iwd~~~~---------~~~~~~~~H~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd  340 (340)
T d1tbga_         287 AGYDDFNCNVWDALKA---------DRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             EEETTSCEEEEETTTC---------CEEEEECCCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             EEECCCEEEEEECCCC---------cEEEEEcCCCCCEEEEEEeCCCCEEEEEccCCEEEEeC
Confidence            9999999999999886         66788999999999999999 99999999999999997

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3.5e-34  Score=255.53  Aligned_cols=295  Identities=17%  Similarity=0.242  Sum_probs=226.9

Q ss_pred             EEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCceeee-ecCCCCeeEEEECCCCCEEEEecCCCcE
Q 014475           26 QLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVK-SLPAEPIKPIAANSHGTYIAGGGQSGDI  104 (424)
Q Consensus        26 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~dg~v  104 (424)
                      ..++++|...+  ++|++    +++++|++++.| |+|++||+.+++.... ..|.++|++++|+|+ .+|++|+.||.|
T Consensus         5 ~~tL~GH~~~v--itc~~----~~~~~l~tgs~D-g~i~vWd~~~~~~~~~l~~H~~~V~~l~~s~~-~~l~s~s~D~~i   76 (355)
T d1nexb2           5 RTTLRGHMTSV--ITCLQ----FEDNYVITGADD-KMIRVYDSINKKFLLQLSGHDGGVWALKYAHG-GILVSGSTDRTV   76 (355)
T ss_dssp             EEEEECCSSSC--EEEEE----EETTEEEEEETT-TEEEEEETTTTEEEEEEECCSSCEEEEEEETT-TEEEEEETTCCE
T ss_pred             cEEECCcCCCc--EEEEE----ECCCEEEEEeCC-CeEEEEECCCCcEEEEEECCCCCEEEEEEcCC-CEEEEEeccccc
Confidence            44577765433  45644    568899999887 9999999998876544 568999999999986 589999999999


Q ss_pred             EEEEccCcceeeeecccc--CCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccc------------cccceEEe
Q 014475          105 YMWEVASGRLLKKWHAHY--RAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQR------------ASHLYLHS  170 (424)
Q Consensus       105 ~iwd~~~~~~~~~~~~~~--~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~------------~~~~~~~~  170 (424)
                      ++|+....+.......+.  .......+.++++++++++.|+.|++||+.+.........            ........
T Consensus        77 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (355)
T d1nexb2          77 RVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGV  156 (355)
T ss_dssp             EEEETTTTEEEEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEE
T ss_pred             ccccccccccccccccccccccccccccccccceeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceeee
Confidence            999999887776654433  3345566788999999999999999999976443221111            11112233


Q ss_pred             ecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeee-cCcceeEEEECCCCCEEEEEeCCCcEEEEEcCC
Q 014475          171 FTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNA  249 (424)
Q Consensus       171 ~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~  249 (424)
                      ...|...+.  .+.+++  +.++++..|+.+++||+++++.+.... +...+.++.++|++..+++++.|+.|++||.++
T Consensus       157 ~~~~~~~v~--~~~~~~--~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~  232 (355)
T d1nexb2         157 LRGHMASVR--TVSGHG--NIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLEN  232 (355)
T ss_dssp             EECCSSCEE--EEEEET--TEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTT
T ss_pred             eeecccccc--cccccc--ceeeeecccceeeeeecccccceeeeeccccccccccccccceeeecccccceEEeeeccc
Confidence            334444443  344555  789999999999999999998887776 778899999999999999999999999999998


Q ss_pred             CCCCCCCcCceeeeeecccCcCeEEEEecCCCEEEEeCCCCcEEEEeCCCCcEEEEEeccCCCeeEEE-EEecCceeeec
Q 014475          250 ESPSTSSYGMHIIGSLSDHSKAVTCLAYSTGDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNIL-VVRRPLYLNLG  328 (424)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~-~s~~~~~l~~~  328 (424)
                      +         ..+..+.+|...|.+++++ +++|++|+.||.|++||++++...  +..|...+.++. +++++++|++|
T Consensus       233 ~---------~~~~~~~~h~~~v~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~g  300 (355)
T d1nexb2         233 G---------ELMYTLQGHTALVGLLRLS-DKFLVSAAADGSIRGWDANDYSRK--FSYHHTNLSAITTFYVSDNILVSG  300 (355)
T ss_dssp             C---------CEEEEECCCSSCCCEEEEC-SSEEEEECTTSEEEEEETTTCCEE--EEEECTTCCCCCEEEECSSEEEEE
T ss_pred             c---------ccccccccccccccccccc-cceeeeeeccccccccccccccee--cccccCCceEEEEEcCCCCEEEEE
Confidence            6         5677888999999999997 579999999999999999988654  445666666664 56666666555


Q ss_pred             cCCCceeeccCCCCCCC
Q 014475          329 SFSNPHTSSRRHGSQLP  345 (424)
Q Consensus       329 ~~d~~i~iw~~~~~~~~  345 (424)
                       .|+.|++||++++++.
T Consensus       301 -~d~~i~vwd~~tg~~~  316 (355)
T d1nexb2         301 -SENQFNIYNLRSGKLV  316 (355)
T ss_dssp             -ETTEEEEEETTTCCBC
T ss_pred             -eCCEEEEEECCCCCEE
Confidence             6899999999988765

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=1.3e-34  Score=253.06  Aligned_cols=249  Identities=15%  Similarity=0.172  Sum_probs=203.7

Q ss_pred             eeeecCCCCeeEEEECCCCCEEEEecCCCcEEEEEccCcceeeeec-cccCCeEEEEEccCCcEEEEeeCCCcEEEEeCC
Q 014475           74 EVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWH-AHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLL  152 (424)
Q Consensus        74 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~  152 (424)
                      .....|.++|++++|+|++++|++|+.||.|++||+++++.+..+. .|...|++++|+|+++ +++++.|+.+++|+..
T Consensus         6 ~~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~-~~~~~~d~~v~~~~~~   84 (299)
T d1nr0a2           6 QVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGD-LFTVSWDDHLKVVPAG   84 (299)
T ss_dssp             EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSC-EEEEETTTEEEEECSS
T ss_pred             eEcCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeeccce-eecccceeeEEEeccC
Confidence            3556799999999999999999999999999999999999888874 6899999999999987 5566779999999986


Q ss_pred             cccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeeecCcceeEEEECCCCCE
Q 014475          153 TVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHV  232 (424)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~  232 (424)
                      ....        .........+...+.++++++++  ..++++ .++.+++|+...   .........+.+++++|++++
T Consensus        85 ~~~~--------~~~~~~~~~~~~~~~~~~~s~~g--~~~~~~-~~~~i~~~~~~~---~~~~~~~~~~~~~~~s~~~~~  150 (299)
T d1nr0a2          85 GSGV--------DSSKAVANKLSSQPLGLAVSADG--DIAVAA-CYKHIAIYSHGK---LTEVPISYNSSCVALSNDKQF  150 (299)
T ss_dssp             SSSS--------CTTSCCEEECSSCEEEEEECTTS--SCEEEE-ESSEEEEEETTE---EEEEECSSCEEEEEECTTSCE
T ss_pred             Cccc--------ccccccccccccccccccccccc--cccccc-cccccccccccc---ccccccccccccccccccccc
Confidence            5211        11112234467788899999887  555554 467899999542   333445667889999999999


Q ss_pred             EEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCCCcEEE---EEec
Q 014475          233 FYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVR---MFRL  308 (424)
Q Consensus       233 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~~~---~~~~  308 (424)
                      +++|+.||.+++||+++..        ........|...|++++|+| +.+|++++.|+.|++||+.++..+.   .+..
T Consensus       151 l~~g~~dg~i~~~d~~~~~--------~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~  222 (299)
T d1nr0a2         151 VAVGGQDSKVHVYKLSGAS--------VSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTF  222 (299)
T ss_dssp             EEEEETTSEEEEEEEETTE--------EEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCC
T ss_pred             ccccccccccccccccccc--------ccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            9999999999999998753        22234456889999999999 9999999999999999998876654   4567


Q ss_pred             cCCCeeEEEEEecCceeeeccCCCceeeccCCCCCCC
Q 014475          309 AKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGSQLP  345 (424)
Q Consensus       309 ~~~~v~~l~~s~~~~~l~~~~~d~~i~iw~~~~~~~~  345 (424)
                      |..+|++++|+|++++|++|+.||.|++|+++.....
T Consensus       223 h~~~v~~l~~s~~~~~l~sgs~dg~i~iwd~~~~~~~  259 (299)
T d1nr0a2         223 HTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDH  259 (299)
T ss_dssp             CSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSC
T ss_pred             cccccccccccccccceEEEcCCCEEEEEECCCCCcc
Confidence            8899999999999999999999999999999876543

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.7e-33  Score=241.92  Aligned_cols=278  Identities=19%  Similarity=0.334  Sum_probs=225.3

Q ss_pred             EEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCceeee-ecCCCCeeEEEECCCCCEEEEecCCCcE
Q 014475           26 QLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVK-SLPAEPIKPIAANSHGTYIAGGGQSGDI  104 (424)
Q Consensus        26 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~dg~v  104 (424)
                      ++.++.+..+..+|.|++    +++++|++++.| |+|+|||+++++.... ..|.++|++++|  ++++|++|+.||.|
T Consensus         5 ~~~i~~~~~~~~~V~c~~----~d~~~l~sgs~D-g~i~vWd~~~~~~~~~l~~H~~~V~~v~~--~~~~l~s~s~D~~i   77 (293)
T d1p22a2           5 LQRIHCRSETSKGVYCLQ----YDDQKIVSGLRD-NTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTV   77 (293)
T ss_dssp             CCCEECCCSSCCCEEEEE----CCSSEEEEEESS-SCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCE
T ss_pred             EEEEeccCCCCCCEEEEE----EcCCEEEEEeCC-CeEEEEECCCCcEEEEEecCCCCEeeeec--ccceeecccccccc
Confidence            445667778889999865    589999999998 9999999998876644 458999999987  57899999999999


Q ss_pred             EEEEccCcceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEE
Q 014475          105 YMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIG  184 (424)
Q Consensus       105 ~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  184 (424)
                      ++|++..+........+....  ..+.+....++++..++.+.+|+..+.        ........+..|...+..+.+.
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~v~~~~~~  147 (293)
T d1p22a2          78 RVWDVNTGEMLNTLIHHCEAV--LHLRFNNGMMVTCSKDRSIAVWDMASP--------TDITLRRVLVGHRAAVNVVDFD  147 (293)
T ss_dssp             EEEESSSCCEEEEECCCCSCE--EEEECCTTEEEEEETTSCEEEEECSSS--------SCCEEEEEECCCSSCEEEEEEE
T ss_pred             ccccccccccccccccccccc--ccccccccceeecccccceeEeecccc--------ccccccccccccccccccceec
Confidence            999999988777766554433  334455678999999999999999763        2233445567788888776664


Q ss_pred             EcCceeEEEEEeCCCcEEEEecCCCceeeeee-cCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeee
Q 014475          185 YGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIG  263 (424)
Q Consensus       185 ~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~  263 (424)
                      +    ..+++++.|+.+++||+++++.+..+. +...+..+.+  ++..+++++.||.|++||+++.         ..+.
T Consensus       148 ~----~~~~~~s~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~---------~~~~  212 (293)
T d1p22a2         148 D----KYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECG---------ACLR  212 (293)
T ss_dssp             T----TEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEE--ETTEEEEEETTSCEEEEETTTC---------CEEE
T ss_pred             c----cccccccCCCceeeecCCCCcEEEEEcccccccccccC--CCCeEEEecCCCEEEEEecccc---------eeee
Confidence            3    567889999999999999999888877 5566666665  4678999999999999999986         5567


Q ss_pred             eecccCcCeEEEEecCCCEEEEeCCCCcEEEEeCCC---------CcEEEEEeccCCCeeEEEEEecCceeeeccCCCce
Q 014475          264 SLSDHSKAVTCLAYSTGDLLISGSEDGMVRVWDPIT---------HNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPH  334 (424)
Q Consensus       264 ~~~~~~~~i~~~~~~~~~~l~t~~~dg~i~iwd~~~---------~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~d~~i  334 (424)
                      ...+|...+..+... +.+|++|+.||.|++||+.+         ..++..+.+|.++|++++|  ++.+|++++.||+|
T Consensus       213 ~~~~~~~~v~~~~~~-~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~~V~~v~~--d~~~l~s~s~Dg~i  289 (293)
T d1p22a2         213 VLEGHEELVRCIRFD-NKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTI  289 (293)
T ss_dssp             EECCCSSCEEEEECC-SSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCSSSEE
T ss_pred             eecccceeeeecccc-ceEEEEEcCCCEEEEEECCCCccccccCCceeeEEecCCCCCEEEEEE--cCCEEEEEecCCEE
Confidence            777888888765443 78999999999999999643         3578889999999999998  56789999999999


Q ss_pred             eecc
Q 014475          335 TSSR  338 (424)
Q Consensus       335 ~iw~  338 (424)
                      ++||
T Consensus       290 ~iWD  293 (293)
T d1p22a2         290 LIWD  293 (293)
T ss_dssp             EEEC
T ss_pred             EEeC
Confidence            9997

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3.8e-34  Score=253.00  Aligned_cols=270  Identities=14%  Similarity=0.168  Sum_probs=205.6

Q ss_pred             EeecCCCCCceEEEeCCCCc--eEEEeeCCCCCCCceEEecceeec--CCCccccCCCCceeEEEEECCCCcee------
Q 014475            5 IASSSVADTGIGCWDLESGA--EQLRYKSCASPPHGLACVGQRFLA--SSQLREQPSASSGSILYWSWSKPQVE------   74 (424)
Q Consensus         5 lat~~~~dg~i~vwd~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~--~~~~l~~~~~~~g~i~vwd~~~~~~~------   74 (424)
                      ||.++.....|+.||....+  ....+.+|.  ...|.+++  |+|  +++++++++.| |+|++||+...+..      
T Consensus        32 la~~~~~~~~i~~~~~~~~~~~~~~~~~gh~--~~~v~~v~--fsP~~~g~~lasgs~D-g~i~iWd~~~~~~~~~~~~~  106 (325)
T d1pgua1          32 IAYPCGKSAFVRCLDDGDSKVPPVVQFTGHG--SSVVTTVK--FSPIKGSQYLCSGDES-GKVIVWGWTFDKESNSVEVN  106 (325)
T ss_dssp             EEEEETTEEEEEECCSSCCSSCSEEEECTTT--TSCEEEEE--ECSSTTCCEEEEEETT-SEEEEEEEEEEGGGTEEEEE
T ss_pred             EEEEeCCCEEEEEEeCCCCCccceEEEeCCC--CCCEEEEE--EeeCCCCCEEEEEeCC-CCEEEeeecCCcceeeeecc
Confidence            44444134456778765443  344554432  35689999  997  56788888887 99999998754321      


Q ss_pred             ---eeecCCCCeeEEEECCCCCEEEEecC--CCcEEEEEccCcceeeeeccccCCeEEEEEccCCcE-EEEeeCCCcEEE
Q 014475           75 ---VKSLPAEPIKPIAANSHGTYIAGGGQ--SGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSF-LISGSEDGCVRI  148 (424)
Q Consensus        75 ---~~~~~~~~v~~~~~s~~~~~l~~~~~--dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~-l~s~~~dg~i~i  148 (424)
                         ....+.++|.+++|+++++++++++.  ++.+.+|+.++++.+..+.+|...|.+++|+|++++ +++++.|+.+++
T Consensus       107 ~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~  186 (325)
T d1pgua1         107 VKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVF  186 (325)
T ss_dssp             EEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEE
T ss_pred             cccccccccCcEEEEEECCCCCccceeeccccceEEEEeecccccceeeeecccccccccccccccceEEEeeccccccc
Confidence               12347789999999999999887654  678999999999999999999999999999998765 778999999999


Q ss_pred             EeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeee-cCcceeEEEEC
Q 014475          149 WSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALD  227 (424)
Q Consensus       149 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~-~~~~i~~~~~~  227 (424)
                      ||......        .........|...|.+++|+|+.. .++++++.|+.|++||+++++.+..+. |...+..+.|+
T Consensus       187 ~d~~~~~~--------~~~~~~~~~~~~~v~~v~~~pd~~-~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s  257 (325)
T d1pgua1         187 YQGPPFKF--------SASDRTHHKQGSFVRDVEFSPDSG-EFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFA  257 (325)
T ss_dssp             EETTTBEE--------EEEECSSSCTTCCEEEEEECSTTC-CEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEE
T ss_pred             cccccccc--------ceecccccCCCCccEEeeeccccc-eeccccccccceeeeeeccccccccccccccccccceee
Confidence            99865221        112233456888999999999743 789999999999999999999988887 55555544444


Q ss_pred             ---CCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCc--CeEEEEec--CCCEEEEeCCCCcEEEEeC
Q 014475          228 ---PAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSK--AVTCLAYS--TGDLLISGSEDGMVRVWDP  297 (424)
Q Consensus       228 ---~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~--~i~~~~~~--~~~~l~t~~~dg~i~iwd~  297 (424)
                         |++++|++++.|+.|++||++++         +++..+..|..  .+..+++.  ++.+|++++.||.|++||+
T Consensus       258 ~~~~dg~~l~s~s~D~~i~iwd~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~vwdl  325 (325)
T d1pgua1         258 LSWLDSQKFATVGADATIRVWDVTTS---------KCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYEL  325 (325)
T ss_dssp             EEESSSSEEEEEETTSEEEEEETTTT---------EEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEET
T ss_pred             eeccCCCEEEEEeCCCeEEEEECCCC---------CEEEEEEecCCcccCeEEEEEECCCCEEEEEECCCEEEEEEC
Confidence               68899999999999999999986         45555554443  34444444  3678999999999999996

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.5e-33  Score=248.28  Aligned_cols=300  Identities=12%  Similarity=0.144  Sum_probs=227.1

Q ss_pred             CCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCce----eeeecCCCCeeEEEECCC-CCEEEEecCCCcEE
Q 014475           31 SCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQV----EVKSLPAEPIKPIAANSH-GTYIAGGGQSGDIY  105 (424)
Q Consensus        31 ~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~----~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~v~  105 (424)
                      -.++|.+.|.+++  |+|++++||+++.| |+|+|||++....    .....|..+|.+++|+|+ +.+|++|+.||.|+
T Consensus         6 ~~~~h~d~I~~l~--fsp~~~~L~s~s~D-g~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~   82 (342)
T d1yfqa_           6 IEQAPKDYISDIK--IIPSKSLLLITSWD-GSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEIL   82 (342)
T ss_dssp             CSSCCSSCEEEEE--EEGGGTEEEEEETT-SEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEE
T ss_pred             cCCCCCCCEEEEE--EeCCCCEEEEEECC-CeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEccccccee
Confidence            3456778999999  99999999999987 9999999876543    223458999999999986 56899999999999


Q ss_pred             EEEccCcceeeeeccccCC-eEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCC--cCceeEEE
Q 014475          106 MWEVASGRLLKKWHAHYRA-VTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGH--TLRITDIV  182 (424)
Q Consensus       106 iwd~~~~~~~~~~~~~~~~-i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~~~~  182 (424)
                      +|++..+........+... .....+.++...+++++.++.+++||+++...       ..........+  ........
T Consensus        83 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~-------~~~~~~~~~~~~~~~~~~~~~  155 (342)
T d1yfqa_          83 KVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGD-------GVIAVKNLNSNNTKVKNKIFT  155 (342)
T ss_dssp             EECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTT-------BCEEEEESCSSSSSSCCCEEE
T ss_pred             eeecccccccccccccccccccccccccccccccccccccccceeecccccc-------ceeeecccccccccceeeeee
Confidence            9999888777666554443 44555667888999999999999999865321       11122222222  23344556


Q ss_pred             EEEcCceeEEEEEeCCCcEEEEecCCCceeeeee----cCcceeEEEECC-CCCEEEEEeCCCcEEEEEcCCCCCCCCCc
Q 014475          183 IGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV----FPSVIDAIALDP-AEHVFYAGSRDGSIYIAALNAESPSTSSY  257 (424)
Q Consensus       183 ~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~----~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  257 (424)
                      +.+.+  ..+++++.|+.|++||++..+......    ......+..+.+ ++..+++++.||.+.+|+...........
T Consensus       156 ~~~~~--~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~  233 (342)
T d1yfqa_         156 MDTNS--SRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSS  233 (342)
T ss_dssp             EEECS--SEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCT
T ss_pred             eeccC--CceeeecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeecc
Confidence            66776  789999999999999998766544332    334555555555 67889999999999999987764432222


Q ss_pred             Cce------eeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCCCcEEEEEeccCCCeeEEEEEecCceeeeccC
Q 014475          258 GMH------IIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSF  330 (424)
Q Consensus       258 ~~~------~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~  330 (424)
                      ...      .......|...|++++|+| +++|++|+.||.|++||+++++.+.++..+ .++..++|+|++++|++++.
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~~l~~~~~~-~~~~~~~~s~~~~~l~~a~s  312 (342)
T d1yfqa_         234 KRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKF-NEDSVVKIACSDNILCLATS  312 (342)
T ss_dssp             TCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCC-SSSEEEEEEECSSEEEEEEE
T ss_pred             ccceeeeeeeccCCCcccccceeEEecCCccEEEEECCCCEEEEEECCCCcEEEEecCC-CCCEEEEEEeCCCEEEEEEc
Confidence            111      1122345778899999999 999999999999999999999999988643 45667899999999999999


Q ss_pred             CCceeeccCCCCC
Q 014475          331 SNPHTSSRRHGSQ  343 (424)
Q Consensus       331 d~~i~iw~~~~~~  343 (424)
                      |+.+++|......
T Consensus       313 dd~~~~~~~~~~~  325 (342)
T d1yfqa_         313 DDTFKTNAAIDQT  325 (342)
T ss_dssp             CTHHHHCSSSCTT
T ss_pred             CCcEEEeeeeCCC
Confidence            9999999875443

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.3e-33  Score=245.06  Aligned_cols=269  Identities=14%  Similarity=0.118  Sum_probs=211.4

Q ss_pred             CceEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCceeeeecCCCCeeEEEECCCCCEEEEecCCC
Q 014475           23 GAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSG  102 (424)
Q Consensus        23 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg  102 (424)
                      +++++++++|   ...|.+++  |+|    |++++.| |+|++||..+.    ...|...|.++++++++ .+++++.|+
T Consensus         3 ~~~i~~l~gH---~~~I~~l~--~s~----l~sgs~D-g~v~~Wd~~~~----~~~h~~~V~~~~~~~~~-~~~s~s~D~   67 (287)
T d1pgua2           3 DEVLKTISGH---NKGITALT--VNP----LISGSYD-GRIMEWSSSSM----HQDHSNLIVSLDNSKAQ-EYSSISWDD   67 (287)
T ss_dssp             EEEEEEECCC---SSCEEEEE--TTT----TEEEETT-SCEEETTTTEE----ECCCCSCEEEEECCSTT-CCEEEETTT
T ss_pred             cceeEEECCC---CCceEEEE--ECc----EEEEeCC-CeEEEEECCCC----CCCCCCCEEEEEecCCC-eEEEEeecc
Confidence            4677777765   56788888  876    8888887 99999998653    34688999999999765 578889999


Q ss_pred             cEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEE
Q 014475          103 DIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIV  182 (424)
Q Consensus       103 ~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  182 (424)
                      ++++|++...+       ....+.++.+++++..+++++ ++.+.+|+..++           .....+..+ ..  ..+
T Consensus        68 ~v~~w~~~~~~-------~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-----------~~~~~~~~~-~~--~~~  125 (287)
T d1pgua2          68 TLKVNGITKHE-------FGSQPKVASANNDGFTAVLTN-DDDLLILQSFTG-----------DIIKSVRLN-SP--GSA  125 (287)
T ss_dssp             EEEETTEEEEE-------CSSCEEEEEECSSSEEEEEET-TSEEEEEETTTC-----------CEEEEEECS-SC--EEE
T ss_pred             ccccccccccc-------cccceeeeeeccCCceEEEee-cccceeeeccce-----------eeeeecccc-ce--eee
Confidence            99999975432       334578889998887776655 557888888552           223333322 23  345


Q ss_pred             EEEcCceeEEEEEeCC-CcEEEEecCCCceeeeee--cCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCc
Q 014475          183 IGYGGVSATIVSASED-RTCKVWSLLKGRLLRNIV--FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGM  259 (424)
Q Consensus       183 ~~~~~~~~~l~~~~~d-~~v~iwd~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~  259 (424)
                      +++++  ..+++++.+ +.+++|++...+....+.  +...+++++|+|++.+|++|+.||.|++||+.+..        
T Consensus       126 ~~~~~--~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~--------  195 (287)
T d1pgua2         126 VSLSQ--NYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSRE--------  195 (287)
T ss_dssp             EEECS--SEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE--------
T ss_pred             eeccC--cceeeeccccceeeeeeccccceeeeeeeccCCceeEEEeccCccccccccccccccceeecccc--------
Confidence            66776  566666665 579999998766655554  66789999999999999999999999999998863        


Q ss_pred             eeeeeecccCcCeEEEEecC-C----------CEEEEeCCCCcEEEEeCCC-CcEEEEEeccCCCeeEEEEEecCceeee
Q 014475          260 HIIGSLSDHSKAVTCLAYST-G----------DLLISGSEDGMVRVWDPIT-HNIVRMFRLAKGPVNNILVVRRPLYLNL  327 (424)
Q Consensus       260 ~~~~~~~~~~~~i~~~~~~~-~----------~~l~t~~~dg~i~iwd~~~-~~~~~~~~~~~~~v~~l~~s~~~~~l~~  327 (424)
                      .....+..|..+|.+++|+| +          .++++|+.|+.|++||+++ ++.+..+.+|.+.|++++|+|++ .|++
T Consensus       196 ~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h~~~V~~v~~~~~~-~l~s  274 (287)
T d1pgua2         196 VKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPS-TLVS  274 (287)
T ss_dssp             EEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETT-EEEE
T ss_pred             cccccccccccccceeeecccccccccccCCCCeeEeecCCCeEEEEECCCCCeEEEEeCCCCCCeEEEEECCCC-EEEE
Confidence            33445678999999999986 3          5899999999999999977 56777788999999999999987 5888


Q ss_pred             ccCCCceeeccC
Q 014475          328 GSFSNPHTSSRR  339 (424)
Q Consensus       328 ~~~d~~i~iw~~  339 (424)
                      ++.|+.|++|++
T Consensus       275 ~g~D~~v~iW~i  286 (287)
T d1pgua2         275 SGADACIKRWNV  286 (287)
T ss_dssp             EETTSCEEEEEE
T ss_pred             EECCCeEEEEEE
Confidence            999999999985

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3.2e-32  Score=247.18  Aligned_cols=294  Identities=16%  Similarity=0.161  Sum_probs=213.2

Q ss_pred             eeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCce-------eeeecCCCCeeEEE------ECC-CCCE
Q 014475           29 YKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQV-------EVKSLPAEPIKPIA------ANS-HGTY   94 (424)
Q Consensus        29 ~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~-------~~~~~~~~~v~~~~------~s~-~~~~   94 (424)
                      -....+|...|.+++  +.  ++++++++.| ++|++||....+.       .....+...+..+.      .++ ++.+
T Consensus         7 ~~~~~~H~~~I~~v~--~~--~~~l~S~S~D-~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (393)
T d1sq9a_           7 ANAGKAHDADIFSVS--AC--NSFTVSCSGD-GYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCL   81 (393)
T ss_dssp             EEESSCSSSCEEEEE--EC--SSEEEEEETT-SEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEE
T ss_pred             eecCCcccCccEEEE--Ee--CCEEEEEECC-CeEEEEECCCCCCCcccceeEeeeeccCCceEeeeEeeeccCCCCCcE
Confidence            344456778898887  64  5789999887 9999999765432       11223333333222      222 3457


Q ss_pred             EEEecCCCcEEEEEccCcceeeee----------ccccCCeEEEEEccC-----CcEEEEeeCCCcEEEEeCCcccchhc
Q 014475           95 IAGGGQSGDIYMWEVASGRLLKKW----------HAHYRAVTCLVFSED-----GSFLISGSEDGCVRIWSLLTVFEECE  159 (424)
Q Consensus        95 l~~~~~dg~v~iwd~~~~~~~~~~----------~~~~~~i~~~~~~~~-----~~~l~s~~~dg~i~iwd~~~~~~~~~  159 (424)
                      +++++.||.|++|++........+          ..+...+..++|.++     +.++++++.||.+++|++........
T Consensus        82 ~~s~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~  161 (393)
T d1sq9a_          82 VATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESN  161 (393)
T ss_dssp             EEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHH
T ss_pred             EEEEeCCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccc
Confidence            889999999999998655332221          235567888888764     46889999999999999854322111


Q ss_pred             ccccc-------cceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeee-------cCcceeEEE
Q 014475          160 SQRAS-------HLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-------FPSVIDAIA  225 (424)
Q Consensus       160 ~~~~~-------~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~-------~~~~i~~~~  225 (424)
                      .....       .........+...+.+++|+|++   +|++|+.|++|++||+++++++..+.       |..+|.+++
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg---~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~  238 (393)
T d1sq9a_         162 SLTLNWSPTLELQGTVESPMTPSQFATSVDISERG---LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVK  238 (393)
T ss_dssp             HTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS---EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEE
T ss_pred             eeeeeeccceecccceecccCCCCcEEEEEECCCC---EEEEEeCCCcEEEEeecccccccccccccccccccceEEEcc
Confidence            11100       11122233456678899999874   88999999999999999998876654       567899999


Q ss_pred             ECCCCCEEEEEeCCCc---EEEEEcCCCCCCCC----CcCceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeC
Q 014475          226 LDPAEHVFYAGSRDGS---IYIAALNAESPSTS----SYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDP  297 (424)
Q Consensus       226 ~~~~~~~l~~~~~dg~---i~i~d~~~~~~~~~----~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~  297 (424)
                      |+|++++|++|+.|+.   |++||++++.....    .........+.+|...|++++|+| +++|++|+.|++|++||+
T Consensus       239 ~spdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~  318 (393)
T d1sq9a_         239 FSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDV  318 (393)
T ss_dssp             ECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEET
T ss_pred             cccccceeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECCCCEEEEEEC
Confidence            9999999999998874   89999988643211    111223334568999999999999 999999999999999999


Q ss_pred             CCCcEEEEEeccCCCee----EEEEEecCceeeeccC
Q 014475          298 ITHNIVRMFRLAKGPVN----NILVVRRPLYLNLGSF  330 (424)
Q Consensus       298 ~~~~~~~~~~~~~~~v~----~l~~s~~~~~l~~~~~  330 (424)
                      ++++++.++++|.++|.    .++|+|++..+++++.
T Consensus       319 ~~g~~~~~l~gH~~~v~~~~~~~~~~~~~~~~~~~~~  355 (393)
T d1sq9a_         319 KTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGV  355 (393)
T ss_dssp             TTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCE
T ss_pred             CCCCEEEEECCcCCcccCCccEEEECCCCCEEEEccc
Confidence            99999999999998876    5889999999887753

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.8e-31  Score=234.41  Aligned_cols=292  Identities=17%  Similarity=0.269  Sum_probs=226.5

Q ss_pred             EeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCceeee-ecCCCCeeEEEECCCCCEEE
Q 014475           18 WDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVK-SLPAEPIKPIAANSHGTYIA   96 (424)
Q Consensus        18 wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~   96 (424)
                      |+..+.++.+.+++|...+  +.|    ++++|++|++++.| |+|+|||+.+++.... ..|..+|.+++|+|+  +|+
T Consensus         1 W~~~~~~~~~~l~GH~~~V--~s~----~~~~g~~l~sgs~D-g~i~vWd~~~~~~~~~~~~h~~~V~~v~~~~~--~l~   71 (342)
T d2ovrb2           1 WRRGELKSPKVLKGHDDHV--ITC----LQFCGNRIVSGSDD-NTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDN--III   71 (342)
T ss_dssp             HHHSCCCCCEEEECSTTSC--EEE----EEEETTEEEEEETT-SCEEEEETTTCCEEEECCCCSSCEEEEEEETT--EEE
T ss_pred             CCCCCCCcCEEECCcCCce--EEE----EEECCCEEEEEeCC-CeEEEEECCCCCEEEEEeCCCCCEEEEEeCCC--ccc
Confidence            5666677778888876543  233    55689999999987 9999999998876543 558899999999874  899


Q ss_pred             EecCCCcEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcC
Q 014475           97 GGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTL  176 (424)
Q Consensus        97 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (424)
                      +|+.|+.+++|+............+...+......  ...+..+..|+.+.+|+..++.           ....+..+..
T Consensus        72 s~s~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~d~~i~~~~~~~~~-----------~~~~~~~~~~  138 (342)
T d2ovrb2          72 SGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQ-----------CLHVLMGHVA  138 (342)
T ss_dssp             EEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSCC-----------EEEEEECCSS
T ss_pred             cceecccccccccccccceecccccceeEeeeecc--cccccccccceeEEEeeccccc-----------ceeeeecccc
Confidence            99999999999998887777777677777666655  4578889999999999996532           2222332322


Q ss_pred             ceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeee-cCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCC
Q 014475          177 RITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTS  255 (424)
Q Consensus       177 ~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~  255 (424)
                      ..  .......  ..+++++.|+.+++||.+..+.+..+. +...+  ..+.+++.++++++.||.|++||++..     
T Consensus       139 ~~--~~~~~~~--~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~--~~~~~~~~~l~s~~~dg~i~~~d~~~~-----  207 (342)
T d2ovrb2         139 AV--RCVQYDG--RRVVSGAYDFMVKVWDPETETCLHTLQGHTNRV--YSLQFDGIHVVSGSLDTSIRVWDVETG-----  207 (342)
T ss_dssp             CE--EEEEECS--SCEEEEETTSCEEEEEGGGTEEEEEECCCSSCE--EEEEECSSEEEEEETTSCEEEEETTTC-----
T ss_pred             cc--eeecccc--ceeeeecCCCeEEEeecccceeeEEEcCccccc--ccccCCCCEEEEEeCCCeEEEeecccc-----
Confidence            22  2334444  688999999999999999888877765 44444  445557899999999999999999886     


Q ss_pred             CcCceeeeeecccCcCeEEEEecCCCEEEEeCCCCcEEEEeCCCCcEEEEEeccCC-CeeEEEEEecCceeeeccCCCce
Q 014475          256 SYGMHIIGSLSDHSKAVTCLAYSTGDLLISGSEDGMVRVWDPITHNIVRMFRLAKG-PVNNILVVRRPLYLNLGSFSNPH  334 (424)
Q Consensus       256 ~~~~~~~~~~~~~~~~i~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~-~v~~l~~s~~~~~l~~~~~d~~i  334 (424)
                          +.+..+.+|...+.+++++ +++|++++.||.|++||+...+....+..+.. .....++.+++.++++|+.||.|
T Consensus       208 ----~~~~~~~~~~~~v~~~~~~-~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~Dg~i  282 (342)
T d2ovrb2         208 ----NCIHTLTGHQSLTSGMELK-DNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTV  282 (342)
T ss_dssp             ----CEEEEECCCCSCEEEEEEE-TTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEECSSEEEEEETTSEE
T ss_pred             ----eeeeEecccccceeEEecC-CCEEEEEcCCCEEEEEecccccccccccccceeeeceeecccCCCeeEEEcCCCEE
Confidence                5677888999999998876 57999999999999999999998888876443 22333444566799999999999


Q ss_pred             eeccCCCCCCCCC
Q 014475          335 TSSRRHGSQLPPP  347 (424)
Q Consensus       335 ~iw~~~~~~~~~~  347 (424)
                      ++||++++++...
T Consensus       283 ~iwd~~tg~~i~~  295 (342)
T d2ovrb2         283 KLWDLKTGEFIRN  295 (342)
T ss_dssp             EEEETTTCCEEEE
T ss_pred             EEEECCCCCEEEE
Confidence            9999998766443

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.1e-31  Score=228.90  Aligned_cols=264  Identities=19%  Similarity=0.325  Sum_probs=212.7

Q ss_pred             EEEeecCCCCCceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCceeeeecCCCC
Q 014475            3 LLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSLPAEP   82 (424)
Q Consensus         3 ~~lat~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~~~~~~~   82 (424)
                      .+||||+ .||+|+|||+.++++++++++|.   ..|.+++  |  ++++|++++.| |.|++|++..+...........
T Consensus        26 ~~l~sgs-~Dg~i~vWd~~~~~~~~~l~~H~---~~V~~v~--~--~~~~l~s~s~D-~~i~~~~~~~~~~~~~~~~~~~   96 (293)
T d1p22a2          26 QKIVSGL-RDNTIKIWDKNTLECKRILTGHT---GSVLCLQ--Y--DERVIITGSSD-STVRVWDVNTGEMLNTLIHHCE   96 (293)
T ss_dssp             SEEEEEE-SSSCEEEEESSSCCEEEEECCCS---SCEEEEE--C--CSSEEEEEETT-SCEEEEESSSCCEEEEECCCCS
T ss_pred             CEEEEEe-CCCeEEEEECCCCcEEEEEecCC---CCEeeee--c--ccceeeccccc-cccccccccccccccccccccc
Confidence            4799999 99999999999999999998654   5677766  5  78899999987 9999999998877655554433


Q ss_pred             eeEEEECCCCCEEEEecCCCcEEEEEccCcce---eeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhc
Q 014475           83 IKPIAANSHGTYIAGGGQSGDIYMWEVASGRL---LKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECE  159 (424)
Q Consensus        83 v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~---~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~  159 (424)
                      .. ..+.+....++++..++.+.+|+..+...   ...+..|...+.++.+.  ...+++++.|+.+++||+++      
T Consensus        97 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~~s~d~~i~~~d~~~------  167 (293)
T d1p22a2          97 AV-LHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWNTST------  167 (293)
T ss_dssp             CE-EEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTT------
T ss_pred             cc-ccccccccceeecccccceeEeeccccccccccccccccccccccceec--ccccccccCCCceeeecCCC------
Confidence            33 33445566788889999999999987653   34456788888888876  45788999999999999955      


Q ss_pred             ccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeee-cCcceeEEEECCCCCEEEEEeC
Q 014475          160 SQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYAGSR  238 (424)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~  238 (424)
                           ...+..+.++...+..+.++  +  ..+++++.|+.|++||+++.+.+.... +...+..  +++++.+|++|+.
T Consensus       168 -----~~~~~~~~~~~~~v~~~~~~--~--~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~--~~~~~~~l~sg~~  236 (293)
T d1p22a2         168 -----CEFVRTLNGHKRGIACLQYR--D--RLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRC--IRFDNKRIVSGAY  236 (293)
T ss_dssp             -----CCEEEEEECCSSCEEEEEEE--T--TEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEE--EECCSSEEEEEET
T ss_pred             -----CcEEEEEcccccccccccCC--C--CeEEEecCCCEEEEEecccceeeeeecccceeeee--ccccceEEEEEcC
Confidence                 34566778888888777664  4  689999999999999999998888776 4455543  5567889999999


Q ss_pred             CCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecCCCEEEEeCCCCcEEEEe
Q 014475          239 DGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTGDLLISGSEDGMVRVWD  296 (424)
Q Consensus       239 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~t~~~dg~i~iwd  296 (424)
                      ||.|++||+..............+..+.+|...|++++|+ +.+|++|+.||+|++||
T Consensus       237 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~~V~~v~~d-~~~l~s~s~Dg~i~iWD  293 (293)
T d1p22a2         237 DGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFD-EFQIVSSSHDDTILIWD  293 (293)
T ss_dssp             TSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEEC-SSCEEECCSSSEEEEEC
T ss_pred             CCEEEEEECCCCccccccCCceeeEEecCCCCCEEEEEEc-CCEEEEEecCCEEEEeC
Confidence            9999999997765544444456778889999999999997 56899999999999998

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=100.00  E-value=3.2e-33  Score=250.36  Aligned_cols=306  Identities=10%  Similarity=0.024  Sum_probs=231.8

Q ss_pred             EEeecCCCCCceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCCCc-eeEEEEECCCCceeeeecCCCC
Q 014475            4 LIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASS-GSILYWSWSKPQVEVKSLPAEP   82 (424)
Q Consensus         4 ~lat~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~-g~i~vwd~~~~~~~~~~~~~~~   82 (424)
                      ++|+++  +|.|.+||++.+...+ +    .|...|.+++  |+|||+.|++++.++ ..|++||.++++......|...
T Consensus        17 ~~a~~~--~g~v~v~d~~~~~~~~-~----~~~~~v~~~~--~spDg~~l~~~~~~~g~~v~v~d~~~~~~~~~~~~~~~   87 (360)
T d1k32a3          17 LIAFVS--RGQAFIQDVSGTYVLK-V----PEPLRIRYVR--RGGDTKVAFIHGTREGDFLGIYDYRTGKAEKFEENLGN   87 (360)
T ss_dssp             CEEEEE--TTEEEEECTTSSBEEE-C----SCCSCEEEEE--ECSSSEEEEEEEETTEEEEEEEETTTCCEEECCCCCCS
T ss_pred             EEEEEE--CCeEEEEECCCCcEEE-c----cCCCCEEEEE--ECCCCCEEEEEEcCCCCEEEEEECCCCcEEEeeCCCce
Confidence            466666  6899999999887664 2    2456788988  999999999877654 4799999999988888889999


Q ss_pred             eeEEEECCCCCEEEEecCCCcEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEee----------CCCcEEEEeCC
Q 014475           83 IKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGS----------EDGCVRIWSLL  152 (424)
Q Consensus        83 v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~----------~dg~i~iwd~~  152 (424)
                      |.+++|+|++++|++++.++.+++|++.+++....+..|...+.+++|+|++++|+.+.          .++.+++||+.
T Consensus        88 v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~  167 (360)
T d1k32a3          88 VFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDME  167 (360)
T ss_dssp             EEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETT
T ss_pred             EEeeeecccccccceeccccccccccccccceeeeeecccccccchhhccceeeeeeeccccccceeeccccceeeeccc
Confidence            99999999999999999999999999999999999999999999999999999998543          45568999996


Q ss_pred             cccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCcee-------eeee-cCcceeEE
Q 014475          153 TVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLL-------RNIV-FPSVIDAI  224 (424)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~-------~~~~-~~~~i~~~  224 (424)
                      ++            .......+...+..+.|+|++  +.|++++.++.+.+||.......       ..+. +......+
T Consensus       168 ~~------------~~~~~~~~~~~~~~~~~spdg--~~l~~~s~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (360)
T d1k32a3         168 GR------------KIFAATTENSHDYAPAFDADS--KNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPT  233 (360)
T ss_dssp             TT------------EEEECSCSSSBEEEEEECTTS--CEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGG
T ss_pred             cC------------ceeeecccccccccccccCCC--CEEEEEeCCCceEcccccccceeeccccceEEEecccCccccc
Confidence            52            223445677788889999998  89999999999999997654322       1111 33444455


Q ss_pred             EECCCCCEEEEEeCCC---cEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC----CCEEEEeCCCCcEEEEeC
Q 014475          225 ALDPAEHVFYAGSRDG---SIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST----GDLLISGSEDGMVRVWDP  297 (424)
Q Consensus       225 ~~~~~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~----~~~l~t~~~dg~i~iwd~  297 (424)
                      .+++++..++++..+.   ..++|.+....        .....+..+...+..+.+.+    ..++++++.++.|++||+
T Consensus       234 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~  305 (360)
T d1k32a3         234 KLVPRSMTSEAGEYDLNDMYKRSSPINVDP--------GDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDV  305 (360)
T ss_dssp             GCCCGGGSCCCCCCCCTTGGGGCEECSCCC--------BCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEET
T ss_pred             eECCCcCcccccceeecccccceeecccCc--------CceeEeeecCCCceEEEEEecCCCeeEEEecCCCCEEEEEEC
Confidence            6667666665544332   12233332221        11223334445555555544    457888899999999999


Q ss_pred             CCCcEEEEEeccCCCeeEEEEEecCceeeeccCCCceeeccCCCCCC
Q 014475          298 ITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGSQL  344 (424)
Q Consensus       298 ~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~d~~i~iw~~~~~~~  344 (424)
                      .+++..    .|.+.|.+++|+|||++|++++.||.|++|++..++.
T Consensus       306 ~~~~~~----~~~~~v~~~~~SpDG~~l~~~~~Dg~i~v~d~~~~~~  348 (360)
T d1k32a3         306 KTRKVT----EVKNNLTDLRLSADRKTVMVRKDDGKIYTFPLEKPED  348 (360)
T ss_dssp             TTCCEE----EEEEEEEEEEECTTSCEEEEEETTSCEEEEESSCTTS
T ss_pred             CCCeEE----EecCCcCEEEECCCCCEEEEEECCCeEEEEECCCCCc
Confidence            987643    2445689999999999999999999999999987654

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.98  E-value=5.4e-31  Score=239.03  Aligned_cols=270  Identities=11%  Similarity=0.095  Sum_probs=193.2

Q ss_pred             eeecCCCCeeEEEECCCCCEEEEecCCCcEEEEEccCcce------eeeeccccCCeEEEEEc------c-CCcEEEEee
Q 014475           75 VKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRL------LKKWHAHYRAVTCLVFS------E-DGSFLISGS  141 (424)
Q Consensus        75 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~------~~~~~~~~~~i~~~~~~------~-~~~~l~s~~  141 (424)
                      ....|...|.++++++  +++++++.|++|+|||..+.+.      ......|...+..+...      + +...+++++
T Consensus         9 ~~~~H~~~I~~v~~~~--~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~   86 (393)
T d1sq9a_           9 AGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTS   86 (393)
T ss_dssp             ESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEE
T ss_pred             cCCcccCccEEEEEeC--CEEEEEECCCeEEEEECCCCCCCcccceeEeeeeccCCceEeeeEeeeccCCCCCcEEEEEe
Confidence            3457999999999874  6899999999999999876532      12222344444333321      1 335678999


Q ss_pred             CCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCc---eeEEEEEeCCCcEEEEecCCCce-------
Q 014475          142 EDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGV---SATIVSASEDRTCKVWSLLKGRL-------  211 (424)
Q Consensus       142 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~---~~~l~~~~~d~~v~iwd~~~~~~-------  211 (424)
                      .||.|++|++............. ........+...+..+++.++..   ..++++++.||.+++||+.....       
T Consensus        87 ~dg~v~~w~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~  165 (393)
T d1sq9a_          87 FSGDLLFYRITREDETKKVIFEK-LDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTL  165 (393)
T ss_dssp             TTSCEEEEEEEECTTTCCEEEEE-ECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTT
T ss_pred             CCCcEEEEEccCCCceeeeeccc-cceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccceeee
Confidence            99999999986533211111000 00111123455677777776532   36889999999999999853210       


Q ss_pred             --------eeee----ecCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC
Q 014475          212 --------LRNI----VFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST  279 (424)
Q Consensus       212 --------~~~~----~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  279 (424)
                              ....    .+...+.+++|+|++ +|++|+.||.|++||+.++.+..   .......+.+|..+|++++|+|
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~~~~~---~~~~~~~l~~h~~~V~~l~~sp  241 (393)
T d1sq9a_         166 NWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLY---NFESQHSMINNSNSIRSVKFSP  241 (393)
T ss_dssp             CCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEE---EEECCC---CCCCCEEEEEECS
T ss_pred             eeccceecccceecccCCCCcEEEEEECCCC-EEEEEeCCCcEEEEeeccccccc---ccccccccccccceEEEccccc
Confidence                    0111    134568899999987 88999999999999998864211   1122345668999999999999


Q ss_pred             -CCEEEEeCCCCc---EEEEeCCCCcEEEEEe-------------ccCCCeeEEEEEecCceeeeccCCCceeeccCCCC
Q 014475          280 -GDLLISGSEDGM---VRVWDPITHNIVRMFR-------------LAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGS  342 (424)
Q Consensus       280 -~~~l~t~~~dg~---i~iwd~~~~~~~~~~~-------------~~~~~v~~l~~s~~~~~l~~~~~d~~i~iw~~~~~  342 (424)
                       +++|++|+.|++   |++||+++++++..+.             +|.+.|++++|+|++++|++++.|++|++||+.++
T Consensus       242 dg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~~g  321 (393)
T d1sq9a_         242 QGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTK  321 (393)
T ss_dssp             STTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTT
T ss_pred             ccceeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECCCCEEEEEECCCC
Confidence             999999998874   9999999999888774             79999999999999999999999999999999988


Q ss_pred             CCCCCcccc
Q 014475          343 QLPPPLDKY  351 (424)
Q Consensus       343 ~~~~~~~~~  351 (424)
                      ++...+..+
T Consensus       322 ~~~~~l~gH  330 (393)
T d1sq9a_         322 ERITTLNMH  330 (393)
T ss_dssp             EEEEEEECC
T ss_pred             CEEEEECCc
Confidence            776555433

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=1.3e-30  Score=226.05  Aligned_cols=250  Identities=20%  Similarity=0.222  Sum_probs=198.5

Q ss_pred             EeecCCCCCceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCceeeeecCCCCee
Q 014475            5 IASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSLPAEPIK   84 (424)
Q Consensus         5 lat~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~~~~~~~v~   84 (424)
                      |+||+ .||+|++||+.++.        ..|...|.+++  ++++ ..+++++.| +++++|+....      .....+.
T Consensus        24 l~sgs-~Dg~v~~Wd~~~~~--------~~h~~~V~~~~--~~~~-~~~~s~s~D-~~v~~w~~~~~------~~~~~~~   84 (287)
T d1pgua2          24 LISGS-YDGRIMEWSSSSMH--------QDHSNLIVSLD--NSKA-QEYSSISWD-DTLKVNGITKH------EFGSQPK   84 (287)
T ss_dssp             TEEEE-TTSCEEETTTTEEE--------CCCCSCEEEEE--CCST-TCCEEEETT-TEEEETTEEEE------ECSSCEE
T ss_pred             EEEEe-CCCeEEEEECCCCC--------CCCCCCEEEEE--ecCC-CeEEEEeec-ccccccccccc------cccccee
Confidence            68999 99999999987643        24567788888  8765 457788887 99999996542      2345678


Q ss_pred             EEEECCCCCEEEEecCCCcEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEeeCCC-cEEEEeCCcccchhccccc
Q 014475           85 PIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDG-CVRIWSLLTVFEECESQRA  163 (424)
Q Consensus        85 ~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg-~i~iwd~~~~~~~~~~~~~  163 (424)
                      ++++++++..++++. ++.+.+|+..+++.+..+..+ ..+  .+++++++.+++++.++ .+++|++....        
T Consensus        85 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~v~~~~~~~v~~~~~~~~~--------  152 (287)
T d1pgua2          85 VASANNDGFTAVLTN-DDDLLILQSFTGDIIKSVRLN-SPG--SAVSLSQNYVAVGLEEGNTIQVFKLSDLE--------  152 (287)
T ss_dssp             EEEECSSSEEEEEET-TSEEEEEETTTCCEEEEEECS-SCE--EEEEECSSEEEEEETTTSCEEEEETTEEE--------
T ss_pred             eeeeccCCceEEEee-cccceeeeccceeeeeecccc-cee--eeeeccCcceeeeccccceeeeeeccccc--------
Confidence            899999988887765 557899999998888777643 333  45667778888887765 69999985421        


Q ss_pred             ccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeee--ecCcceeEEEECCC----------CC
Q 014475          164 SHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNI--VFPSVIDAIALDPA----------EH  231 (424)
Q Consensus       164 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~--~~~~~i~~~~~~~~----------~~  231 (424)
                        ........|..++++++|+|++  .+|++++.||.|++||+.+++.....  .|...|.+++|+|.          +.
T Consensus       153 --~~~~~~~~~~~~v~~~~~s~~~--~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~  228 (287)
T d1pgua2         153 --VSFDLKTPLRAKPSYISISPSE--TYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEED  228 (287)
T ss_dssp             --EEEECSSCCSSCEEEEEECTTS--SEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCC
T ss_pred             --eeeeeeeccCCceeEEEeccCc--cccccccccccccceeecccccccccccccccccceeeecccccccccccCCCC
Confidence              1122234577899999999998  89999999999999999988766543  27889999999874          46


Q ss_pred             EEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecCCCEEEEeCCCCcEEEEeC
Q 014475          232 VFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTGDLLISGSEDGMVRVWDP  297 (424)
Q Consensus       232 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~t~~~dg~i~iwd~  297 (424)
                      ++++|+.|+.|++||++...        ..+..+.+|...|++++|+|+..|++++.|+.|++|++
T Consensus       229 ~l~sgs~D~~i~iw~~~~~~--------~~~~~~~~h~~~V~~v~~~~~~~l~s~g~D~~v~iW~i  286 (287)
T d1pgua2         229 LVATGSLDTNIFIYSVKRPM--------KIIKALNAHKDGVNNLLWETPSTLVSSGADACIKRWNV  286 (287)
T ss_dssp             EEEEEETTSCEEEEESSCTT--------CCEEETTSSTTCEEEEEEEETTEEEEEETTSCEEEEEE
T ss_pred             eeEeecCCCeEEEEECCCCC--------eEEEEeCCCCCCeEEEEECCCCEEEEEECCCeEEEEEE
Confidence            89999999999999998753        55677789999999999999667999999999999985

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=4.5e-30  Score=227.13  Aligned_cols=253  Identities=13%  Similarity=0.006  Sum_probs=190.2

Q ss_pred             eeecCCCCeeEEEECCCCCEEEEecCCCcEEEEEccCcceeee---eccccCCeEEEEEccC-CcEEEEeeCCCcEEEEe
Q 014475           75 VKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKK---WHAHYRAVTCLVFSED-GSFLISGSEDGCVRIWS  150 (424)
Q Consensus        75 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~---~~~~~~~i~~~~~~~~-~~~l~s~~~dg~i~iwd  150 (424)
                      +...|.+.|++|+|+|++++||+|+.||+|+|||++++.....   ..+|..+|.+++|+|+ +.+|++|+.||.|++|+
T Consensus         6 ~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~~w~   85 (342)
T d1yfqa_           6 IEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVD   85 (342)
T ss_dssp             CSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEEC
T ss_pred             cCCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEcccccceeeee
Confidence            4567899999999999999999999999999999987654333   3369999999999986 56899999999999999


Q ss_pred             CCcccchhcccccccceEEeecCCc-CceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeee-------cCccee
Q 014475          151 LLTVFEECESQRASHLYLHSFTGHT-LRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-------FPSVID  222 (424)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~-------~~~~i~  222 (424)
                      +....           .......+. .......+.++.  ..+++++.++.+++||++.+.......       ......
T Consensus        86 ~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~  152 (342)
T d1yfqa_          86 LIGSP-----------SFQALTNNEANLGICRICKYGD--DKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNK  152 (342)
T ss_dssp             SSSSS-----------SEEECBSCCCCSCEEEEEEETT--TEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCC
T ss_pred             ccccc-----------cccccccccccccccccccccc--ccccccccccccceeeccccccceeeecccccccccceee
Confidence            96521           222233333 333344455555  789999999999999997655433332       223455


Q ss_pred             EEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC--CCEEEEeCCCCcEEEEeCCCC
Q 014475          223 AIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST--GDLLISGSEDGMVRVWDPITH  300 (424)
Q Consensus       223 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~l~t~~~dg~i~iwd~~~~  300 (424)
                      ...+.+.+..+++++.|+.|++|+++......      .......+...+.+..+.+  +..+++++.||.+.+|+....
T Consensus       153 ~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~  226 (342)
T d1yfqa_         153 IFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDN------GTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQ  226 (342)
T ss_dssp             EEEEEECSSEEEEEESTTEEEEEESSCCTTCC------CEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTT
T ss_pred             eeeeeccCCceeeecCCCcEEEEecccCcccc------eeeeecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCC
Confidence            66778889999999999999999998765321      1223334555666666666  789999999999999997643


Q ss_pred             cEE------EE---------EeccCCCeeEEEEEecCceeeeccCCCceeeccCCCCCCCC
Q 014475          301 NIV------RM---------FRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGSQLPP  346 (424)
Q Consensus       301 ~~~------~~---------~~~~~~~v~~l~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~  346 (424)
                      ...      ..         ...|...|++++|+|++++|++|+.||.|++||+.+.+...
T Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~~l~  287 (342)
T d1yfqa_         227 GDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIK  287 (342)
T ss_dssp             CCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEE
T ss_pred             cceeeccccceeeeeeeccCCCcccccceeEEecCCccEEEEECCCCEEEEEECCCCcEEE
Confidence            211      11         12456689999999999999999999999999999776543

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.97  E-value=5.5e-30  Score=234.72  Aligned_cols=331  Identities=10%  Similarity=-0.052  Sum_probs=229.3

Q ss_pred             EEEeecCCCCCceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCceeee------
Q 014475            3 LLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVK------   76 (424)
Q Consensus         3 ~~lat~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~------   76 (424)
                      +++++.+ .||+|+|||+.+++.+.++..+.    .+..++  |+|||+++++++.| ++|++||+.+++....      
T Consensus        33 ~~~V~~~-~dg~v~vwD~~t~~~~~~l~~g~----~~~~va--fSPDGk~l~~~~~d-~~v~vwd~~t~~~~~~~~i~~~  104 (426)
T d1hzua2          33 LFSVTLR-DAGQIALVDGDSKKIVKVIDTGY----AVHISR--MSASGRYLLVIGRD-ARIDMIDLWAKEPTKVAEIKIG  104 (426)
T ss_dssp             EEEEEET-TTTEEEEEETTTCSEEEEEECCS----SEEEEE--ECTTSCEEEEEETT-SEEEEEETTSSSCEEEEEEECC
T ss_pred             EEEEEEc-CCCEEEEEECCCCcEEEEEeCCC----CeeEEE--ECCCCCEEEEEeCC-CCEEEEEccCCceeEEEEEeCC
Confidence            5678888 99999999999999999998653    467777  99999999999887 9999999988764321      


Q ss_pred             ecCCCCeeEEEECCCCCEEEEe-cCCCcEEEEEccCcceeeeeccccCCeEEEEEccCCcE-EEEeeCCCcEEEEeCCcc
Q 014475           77 SLPAEPIKPIAANSHGTYIAGG-GQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSF-LISGSEDGCVRIWSLLTV  154 (424)
Q Consensus        77 ~~~~~~v~~~~~s~~~~~l~~~-~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~-l~s~~~dg~i~iwd~~~~  154 (424)
                      ..|.+.+.+++|+|||++++++ ..++.+.+||..++..+..+..|...+....+.+++.. .+..+.|+...++.....
T Consensus       105 ~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~  184 (426)
T d1hzua2         105 IEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKET  184 (426)
T ss_dssp             SEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTT
T ss_pred             CCCcceEEeeeecCCCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCC
Confidence            1244556777888999987555 57899999999999888887766655554555444432 233344444433333221


Q ss_pred             cchhcc-cccccceEEeecCCcCceeEEEEEEcCceeEEEE-EeCCCcEEEEecCCCceeeeeecC---cceeEEEECCC
Q 014475          155 FEECES-QRASHLYLHSFTGHTLRITDIVIGYGGVSATIVS-ASEDRTCKVWSLLKGRLLRNIVFP---SVIDAIALDPA  229 (424)
Q Consensus       155 ~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~-~~~d~~v~iwd~~~~~~~~~~~~~---~~i~~~~~~~~  229 (424)
                      ...... .............+...+..+.+++++  +++++ ...+..+.+++..+++........   .......+.+.
T Consensus       185 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g--~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (426)
T d1hzua2         185 GKVLLVNYKDIDNLTVTSIGAAPFLADGGWDSSH--RYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHP  262 (426)
T ss_dssp             TEEEEEECSSSSSCEEEEEECCSSEEEEEECTTS--CEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEET
T ss_pred             CeEEEEEeccccceeeEEeccCCccEeeeECCCC--cEEEeeeecccceeeeecccccEEEEeccCCcccccceeeeecC
Confidence            100000 001111122334567778899999988  55554 456677999999999988777622   22223333332


Q ss_pred             C-CEE--EEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEE-------eCCCCcEEEEeCC
Q 014475          230 E-HVF--YAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLIS-------GSEDGMVRVWDPI  298 (424)
Q Consensus       230 ~-~~l--~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t-------~~~dg~i~iwd~~  298 (424)
                      + ..+  +....++.+.+|+.......  ...++....+.+|...+..++|+| +.+|++       ++.|++|++||+.
T Consensus       263 ~~~~~~~~~~~~d~~v~~~~~~~~~~~--~~~~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~  340 (426)
T d1hzua2         263 KYGPVWSTSHLGDGSISLIGTDPKNHP--QYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLK  340 (426)
T ss_dssp             TTEEEEEEECTTTCEEEEEECCTTTCT--TTBTSEEEEEECSSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETT
T ss_pred             CCCceEEeccCCCceEEEeeccccccc--cccceEeEEEecCCCceeEEEcCCCCceEEEeecCCCCcccCCEEEEEECC
Confidence            2 222  23346788888887765422  223466778899999999999999 889884       4568899999999


Q ss_pred             CCcEEEEEe---------ccCCCeeEEEEEecCceeee-----ccCCCceeeccCCCCCCC
Q 014475          299 THNIVRMFR---------LAKGPVNNILVVRRPLYLNL-----GSFSNPHTSSRRHGSQLP  345 (424)
Q Consensus       299 ~~~~~~~~~---------~~~~~v~~l~~s~~~~~l~~-----~~~d~~i~iw~~~~~~~~  345 (424)
                      +++...++.         .|...|.+++|||||++++.     ++.++.|++||..+.++.
T Consensus       341 t~~~~~~~~~~~~~~~~~~~~~rv~~~~fSpDGk~i~vs~~~~~~~~~~i~v~D~~T~k~~  401 (426)
T d1hzua2         341 NLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLK  401 (426)
T ss_dssp             CTTSCCEEECHHHHHCCCSSCCCEEEEEECSSSSEEEEEECCCTTSCCEEEEEETTTTEEE
T ss_pred             CCCcCeEEeccchhcccCCCCccEEEEEECCCCCEEEEEEecCCCCCCeEEEEECCCCeEE
Confidence            998776653         34557999999999997742     357889999999988643

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.96  E-value=1.5e-28  Score=224.69  Aligned_cols=317  Identities=10%  Similarity=-0.002  Sum_probs=219.9

Q ss_pred             EEEeecCCCCCceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCceee--e----
Q 014475            3 LLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEV--K----   76 (424)
Q Consensus         3 ~~lat~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~--~----   76 (424)
                      +++++.+ .||+|.|||.++++.+.++..+.    .+..++  |+|||+++++++.| |.|.+||+.+.+...  .    
T Consensus        33 ~~~v~~~-d~g~v~v~D~~t~~v~~~~~~g~----~~~~v~--fSpDG~~l~~~s~d-g~v~~~d~~t~~~~~~~~i~~~  104 (432)
T d1qksa2          33 LFSVTLR-DAGQIALIDGSTYEIKTVLDTGY----AVHISR--LSASGRYLFVIGRD-GKVNMIDLWMKEPTTVAEIKIG  104 (432)
T ss_dssp             EEEEEET-TTTEEEEEETTTCCEEEEEECSS----CEEEEE--ECTTSCEEEEEETT-SEEEEEETTSSSCCEEEEEECC
T ss_pred             EEEEEEc-CCCEEEEEECCCCcEEEEEeCCC----CeeEEE--ECCCCCEEEEEcCC-CCEEEEEeeCCCceEEEEEecC
Confidence            5578888 99999999999999999998653    467777  99999999999887 999999998765321  1    


Q ss_pred             ecCCCCeeEEEECCCCCEE-EEecCCCcEEEEEccCcceeeeecc-----------ccCCeEEEEEccCCcEE-EEeeCC
Q 014475           77 SLPAEPIKPIAANSHGTYI-AGGGQSGDIYMWEVASGRLLKKWHA-----------HYRAVTCLVFSEDGSFL-ISGSED  143 (424)
Q Consensus        77 ~~~~~~v~~~~~s~~~~~l-~~~~~dg~v~iwd~~~~~~~~~~~~-----------~~~~i~~~~~~~~~~~l-~s~~~d  143 (424)
                      ..|.+.+.+..|+|||++| +++..++.|++||..+++.+..+..           +......+.++|++..+ ++...+
T Consensus       105 ~~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~  184 (432)
T d1qksa2         105 SEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKET  184 (432)
T ss_dssp             SEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTT
T ss_pred             CCCCCeEEecccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccC
Confidence            1244556667788999986 6777899999999999988877654           34556778899988775 455667


Q ss_pred             CcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEe-CCCcEEEEecCCCceeeeeec-----
Q 014475          144 GCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSAS-EDRTCKVWSLLKGRLLRNIVF-----  217 (424)
Q Consensus       144 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~-~d~~v~iwd~~~~~~~~~~~~-----  217 (424)
                      +.|.+||..+.         +...+..+ .+...+.+++++|++  +++++++ .++.+.++|..+++....+..     
T Consensus       185 ~~i~~~d~~~~---------~~~~~~~i-~~g~~~~~~~~spdg--~~~~va~~~~~~v~v~d~~~~~~~~~~~~g~~~~  252 (432)
T d1qksa2         185 GKILLVDYTDL---------NNLKTTEI-SAERFLHDGGLDGSH--RYFITAANARNKLVVIDTKEGKLVAIEDTGGQTP  252 (432)
T ss_dssp             TEEEEEETTCS---------SEEEEEEE-ECCSSEEEEEECTTS--CEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSB
T ss_pred             CeEEEEEccCC---------CcceEEEE-cccCccccceECCCC--CEEEEeccccceEEEeecccceEEEEeccCcccc
Confidence            89999998652         12222222 244567889999998  6655555 566899999998887776652     


Q ss_pred             -CcceeEEEECCCCCEEEEEe-CCCcEEEEEcCCCCCCCCCcCceeeeeec-------------------------ccCc
Q 014475          218 -PSVIDAIALDPAEHVFYAGS-RDGSIYIAALNAESPSTSSYGMHIIGSLS-------------------------DHSK  270 (424)
Q Consensus       218 -~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~-------------------------~~~~  270 (424)
                       ........+...+....+.. .++.+.+|+.........  .++......                         .|..
T Consensus       253 ~~~~~~~~~~~~~g~~~~~~~lg~~~v~~~~~~~~~~~~~--~~~v~~~~~~~~g~~~~~~s~p~~~~lw~~~~~~~~~~  330 (432)
T d1qksa2         253 HPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPEGHPDN--AWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAE  330 (432)
T ss_dssp             CCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCTTT--BTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHH
T ss_pred             ccCcccceecCCCCceecccccCCceEEeccccccccccc--ccEEEEEEEcCCCCeEEEEecCCccceeecccCCCCCC
Confidence             23334444444444444433 366788887655432111  011111111                         1111


Q ss_pred             CeEEEEecC-CCEEEEeCCCCcEEEEeCCCCcEEEEEeccCCCeeEEEEEecCceeeec-----cCCCceeeccCCCCCC
Q 014475          271 AVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLG-----SFSNPHTSSRRHGSQL  344 (424)
Q Consensus       271 ~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~-----~~d~~i~iw~~~~~~~  344 (424)
                      ...++++ | ++.+++++.|+.+++|++.++..+   ..|...|.+++|+|||++|+.+     ..+|.|.+||..+.++
T Consensus       331 ~~~sv~v-pDg~~la~~s~d~~~k~w~~~~~~~l---~~~~~~v~~~~fS~DG~~v~~S~~~~~~~~g~i~i~D~~T~k~  406 (432)
T d1qksa2         331 ISGSVAV-FDIKAMTGDGSDPEFKTLPIAEWAGI---TEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLEL  406 (432)
T ss_dssp             HHTCEEE-EEGGGCCCSSSCCCEEEECHHHHHTC---CSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTTEE
T ss_pred             eeeEEEE-EechhhcccccCCceEeccccccccc---CCCCCcEEEeEECCCCCEEEEEEecCCCCCCcEEEEECCCceE
Confidence            1223443 5 778888889999999987655333   3466789999999999988544     3578899999998865


Q ss_pred             C
Q 014475          345 P  345 (424)
Q Consensus       345 ~  345 (424)
                      .
T Consensus       407 ~  407 (432)
T d1qksa2         407 K  407 (432)
T ss_dssp             E
T ss_pred             E
Confidence            3

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.96  E-value=4.6e-25  Score=191.69  Aligned_cols=274  Identities=13%  Similarity=0.121  Sum_probs=213.0

Q ss_pred             EEEeecCCCCCceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCceeeeecCCCC
Q 014475            3 LLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSLPAEP   82 (424)
Q Consensus         3 ~~lat~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~~~~~~~   82 (424)
                      ...++++ .|++|.|||+++++.++++....    ....++  |+|+|+++++++..++.|++||+.+++..........
T Consensus         3 ~~yV~~~-~~~~v~v~D~~t~~~~~~i~~g~----~p~~va--~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~~   75 (301)
T d1l0qa2           3 FAYIANS-ESDNISVIDVTSNKVTATIPVGS----NPMGAV--ISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSS   75 (301)
T ss_dssp             EEEEEET-TTTEEEEEETTTTEEEEEEECSS----SEEEEE--ECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSS
T ss_pred             EEEEEEC-CCCEEEEEECCCCeEEEEEECCC----CceEEE--EeCCCCEEEEEECCCCEEEEEECCCCceeeeeecccc
Confidence            3455667 89999999999999999987542    345667  9999999876655559999999999887766555667


Q ss_pred             eeEEEECCCCCEEEE-ecCCCcEEEEEccCcceeeeeccccCCeEEEEEccCCcEEE-EeeCCCcEEEEeCCcccchhcc
Q 014475           83 IKPIAANSHGTYIAG-GGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLI-SGSEDGCVRIWSLLTVFEECES  160 (424)
Q Consensus        83 v~~~~~s~~~~~l~~-~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-s~~~dg~i~iwd~~~~~~~~~~  160 (424)
                      +..++|++++..+++ +..++.+.+|+..+++....+..+ ..+.++.|+|+++.++ ++..++.+.+|+..+       
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~-------  147 (301)
T d1l0qa2          76 PQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSPDGKKLYVTNNGDKTVSVINTVT-------  147 (301)
T ss_dssp             EEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEETTTTEEEEEETTT-------
T ss_pred             ccccccccccccccccccccceeeecccccceeeeecccc-ccceEEEeecCCCeeeeeeccccceeeeeccc-------
Confidence            899999999986654 566778999999999888887644 5678999999998775 455678899999855       


Q ss_pred             cccccceEEeecCCcCceeEEEEEEcCceeEEEEEeC-CCcEEEEecCCCceeeeeecCcceeEEEECCCCCEEEEEeC-
Q 014475          161 QRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASE-DRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSR-  238 (424)
Q Consensus       161 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~-d~~v~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-  238 (424)
                          ......+. +...+..+.+++++  ..+++++. ++.+.+|+....+..........+..+++++++..++++.. 
T Consensus       148 ----~~~~~~~~-~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~~~  220 (301)
T d1l0qa2         148 ----KAVINTVS-VGRSPKGIAVTPDG--TKVYVANFDSMSISVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVD  220 (301)
T ss_dssp             ----TEEEEEEE-CCSSEEEEEECTTS--SEEEEEETTTTEEEEEETTTTEEEEEEECSSEEEEEEECTTSSEEEEEEEC
T ss_pred             ----cceeeecc-cCCCceEEEeeccc--cceeeecccccccccccccceeeeecccccCCcceeecccccccccccccc
Confidence                22333333 33456788898887  55555554 56788888888888888878888899999999998877653 


Q ss_pred             --CCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEE-EEeCCCCcEEEEeCCCCcEEEEEec
Q 014475          239 --DGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLL-ISGSEDGMVRVWDPITHNIVRMFRL  308 (424)
Q Consensus       239 --dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l-~t~~~dg~i~iwd~~~~~~~~~~~~  308 (424)
                        ++.|++||..+.         +.+..+.. ...+.+++|+| +++| ++++.|+.|++||+++++.+.++..
T Consensus       221 ~~~~~v~v~D~~t~---------~~~~~~~~-~~~~~~va~spdg~~l~va~~~~~~i~v~D~~t~~~~~~~~v  284 (301)
T d1l0qa2         221 KYFNTVSMIDTGTN---------KITARIPV-GPDPAGIAVTPDGKKVYVALSFCNTVSVIDTATNTITATMAV  284 (301)
T ss_dssp             SSCCEEEEEETTTT---------EEEEEEEC-CSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC
T ss_pred             ceeeeeeeeecCCC---------eEEEEEcC-CCCEEEEEEeCCCCEEEEEECCCCeEEEEECCCCeEEEEEeC
Confidence              367999999886         44445443 45689999999 8765 6788899999999999999998864

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.96  E-value=9.2e-26  Score=196.19  Aligned_cols=262  Identities=14%  Similarity=0.123  Sum_probs=206.1

Q ss_pred             CceeEEEEECCCCceeeeecCCCCeeEEEECCCCCEEE-EecCCCcEEEEEccCcceeeeeccccCCeEEEEEccCCcEE
Q 014475           59 SSGSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIA-GGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFL  137 (424)
Q Consensus        59 ~~g~i~vwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l  137 (424)
                      ++++|.+||..+++..........+..++|+|||++|+ ++..++.|++||+.+++.+..+..+. .+..+.|+++++.+
T Consensus        10 ~~~~v~v~D~~t~~~~~~i~~g~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~-~~~~~~~~~~~~~~   88 (301)
T d1l0qa2          10 ESDNISVIDVTSNKVTATIPVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVAVSPDGKQV   88 (301)
T ss_dssp             TTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEE
T ss_pred             CCCEEEEEECCCCeEEEEEECCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeeeccc-cccccccccccccc
Confidence            34999999999998876666677789999999999874 66778999999999999999887665 47899999998865


Q ss_pred             E-EeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeee
Q 014475          138 I-SGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV  216 (424)
Q Consensus       138 ~-s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~  216 (424)
                      + ++..++.+.+|+..+           ......+. +.....++.+++++. ..++++..++.+.+|+..+.+....+.
T Consensus        89 ~~~~~~~~~~~~~~~~~-----------~~~~~~~~-~~~~~~~~~~~~dg~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (301)
T d1l0qa2          89 YVTNMASSTLSVIDTTS-----------NTVAGTVK-TGKSPLGLALSPDGK-KLYVTNNGDKTVSVINTVTKAVINTVS  155 (301)
T ss_dssp             EEEETTTTEEEEEETTT-----------TEEEEEEE-CSSSEEEEEECTTSS-EEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred             cccccccceeeeccccc-----------ceeeeecc-ccccceEEEeecCCC-eeeeeeccccceeeeeccccceeeecc
Confidence            5 455677899999855           22334444 344567889999884 455667778899999999999999988


Q ss_pred             cCcceeEEEECCCCCEEEEEeCC-CcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeC---CCCc
Q 014475          217 FPSVIDAIALDPAEHVFYAGSRD-GSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGS---EDGM  291 (424)
Q Consensus       217 ~~~~i~~~~~~~~~~~l~~~~~d-g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~---~dg~  291 (424)
                      ....+..+.++|++..++++..+ +.+.+|+....         ....... ....+..+++++ ++.++.++   .++.
T Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~-~~~~~~~~~~~~~g~~~~v~~~~~~~~~  225 (301)
T d1l0qa2         156 VGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTN---------SVIDTVK-VEAAPSGIAVNPEGTKAYVTNVDKYFNT  225 (301)
T ss_dssp             CCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTT---------EEEEEEE-CSSEEEEEEECTTSSEEEEEEECSSCCE
T ss_pred             cCCCceEEEeeccccceeeecccccccccccccce---------eeeeccc-ccCCcceeeccccccccccccccceeee
Confidence            88889999999999998888766 45666666654         3333333 345567888988 77665543   4578


Q ss_pred             EEEEeCCCCcEEEEEeccCCCeeEEEEEecCcee-eeccCCCceeeccCCCCCCC
Q 014475          292 VRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYL-NLGSFSNPHTSSRRHGSQLP  345 (424)
Q Consensus       292 i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l-~~~~~d~~i~iw~~~~~~~~  345 (424)
                      |++||+.+++.+..+..+ ..+.+++|+|||++| ++++.|+.|++||+.++++.
T Consensus       226 v~v~D~~t~~~~~~~~~~-~~~~~va~spdg~~l~va~~~~~~i~v~D~~t~~~~  279 (301)
T d1l0qa2         226 VSMIDTGTNKITARIPVG-PDPAGIAVTPDGKKVYVALSFCNTVSVIDTATNTIT  279 (301)
T ss_dssp             EEEEETTTTEEEEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEE
T ss_pred             eeeeecCCCeEEEEEcCC-CCEEEEEEeCCCCEEEEEECCCCeEEEEECCCCeEE
Confidence            999999999999988754 567999999999987 67888999999999887654

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.95  E-value=7.5e-27  Score=208.48  Aligned_cols=279  Identities=13%  Similarity=-0.023  Sum_probs=211.8

Q ss_pred             eec-CCCccccCCCCceeEEEEECCCCceeeeecCCCCeeEEEECCCCCEEEEecCCC--cEEEEEccCcceeeeecccc
Q 014475           46 FLA-SSQLREQPSASSGSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSG--DIYMWEVASGRLLKKWHAHY  122 (424)
Q Consensus        46 ~~~-~~~~l~~~~~~~g~i~vwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg--~v~iwd~~~~~~~~~~~~~~  122 (424)
                      |+| ||+++|+++.  |.|.+||..++... ...|...|.+++|+|||++|++++.+.  .|++||.++++.. .+..|.
T Consensus        10 fSP~dG~~~a~~~~--g~v~v~d~~~~~~~-~~~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~-~~~~~~   85 (360)
T d1k32a3          10 FSPLDGDLIAFVSR--GQAFIQDVSGTYVL-KVPEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAE-KFEENL   85 (360)
T ss_dssp             EEECGGGCEEEEET--TEEEEECTTSSBEE-ECSCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEE-ECCCCC
T ss_pred             ccCCCCCEEEEEEC--CeEEEEECCCCcEE-EccCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcEE-EeeCCC
Confidence            999 9999998875  89999999887654 456899999999999999998876553  7999999877654 566799


Q ss_pred             CCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEe------
Q 014475          123 RAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSAS------  196 (424)
Q Consensus       123 ~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~------  196 (424)
                      ..|.+++|+|++++|++++.++.+++|++.+           ......+..|...+.+++|+|++  ++|+.+.      
T Consensus        86 ~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~spdg--~~la~~~~~~~~~  152 (360)
T d1k32a3          86 GNVFAMGVDRNGKFAVVANDRFEIMTVDLET-----------GKPTVIERSREAMITDFTISDNS--RFIAYGFPLKHGE  152 (360)
T ss_dssp             CSEEEEEECTTSSEEEEEETTSEEEEEETTT-----------CCEEEEEECSSSCCCCEEECTTS--CEEEEEEEECSST
T ss_pred             ceEEeeeecccccccceeccccccccccccc-----------cceeeeeecccccccchhhccce--eeeeeeccccccc
Confidence            9999999999999999999999999999955           33455677888999999999998  7777543      


Q ss_pred             ----CCCcEEEEecCCCceeeeeecCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCe
Q 014475          197 ----EDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAV  272 (424)
Q Consensus       197 ----~d~~v~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i  272 (424)
                          .++.+++||+.+++......+...+..++|+|+|+.|++++.++.+.+|+..........  .........|...+
T Consensus       153 ~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~s~~~~~~~~d~~~~~~~~~~--~~~~~~~~~~~~~~  230 (360)
T d1k32a3         153 TDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEV--VSKPFVIPLIPGSP  230 (360)
T ss_dssp             TCSCCEEEEEEEETTTTEEEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCS--CBEEEEEESSTTCC
T ss_pred             eeeccccceeeeccccCceeeecccccccccccccCCCCEEEEEeCCCceEcccccccceeecc--ccceEEEecccCcc
Confidence                345699999999888777778888999999999999999999999999998664321111  11222333455555


Q ss_pred             EEEEecC-CCEEEEeCCCC-----cEEEEeCCCCcEEEEEeccCCCeeEEEEEe---cCceeeeccCCCceeeccCCCCC
Q 014475          273 TCLAYST-GDLLISGSEDG-----MVRVWDPITHNIVRMFRLAKGPVNNILVVR---RPLYLNLGSFSNPHTSSRRHGSQ  343 (424)
Q Consensus       273 ~~~~~~~-~~~l~t~~~dg-----~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~---~~~~l~~~~~d~~i~iw~~~~~~  343 (424)
                      ..+.+++ +..++++..+.     .+..++...+.. ..+..+.+.+..+.+.+   ++.++++++.++.+++||+.+.+
T Consensus       231 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~  309 (360)
T d1k32a3         231 NPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDY-RMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRK  309 (360)
T ss_dssp             CGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCE-EEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCC
T ss_pred             ccceECCCcCcccccceeecccccceeecccCcCce-eEeeecCCCceEEEEEecCCCeeEEEecCCCCEEEEEECCCCe
Confidence            5566777 55555554332     244455555443 34445556566555554   44578899999999999998765


Q ss_pred             C
Q 014475          344 L  344 (424)
Q Consensus       344 ~  344 (424)
                      .
T Consensus       310 ~  310 (360)
T d1k32a3         310 V  310 (360)
T ss_dssp             E
T ss_pred             E
Confidence            4

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.94  E-value=4.3e-25  Score=194.97  Aligned_cols=289  Identities=13%  Similarity=0.036  Sum_probs=203.3

Q ss_pred             eEEEeecCCCCCceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCceeeeecC--
Q 014475            2 ELLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSLP--   79 (424)
Q Consensus         2 e~~lat~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~~~~--   79 (424)
                      +.+|++++ .|++|+|||+++++.+.++..+... ..+..++  |+|||+++++++..++.|.+||+.+++.......  
T Consensus         1 ~~~~vt~~-~d~~v~v~D~~s~~~~~~i~~~~~~-~~~~~i~--~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~   76 (337)
T d1pbyb_           1 RDYILAPA-RPDKLVVIDTEKMAVDKVITIADAG-PTPMVPM--VAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLST   76 (337)
T ss_dssp             CEEEEEEE-TTTEEEEEETTTTEEEEEEECTTCT-TCCCCEE--ECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCB
T ss_pred             CeEEEEEc-CCCEEEEEECCCCeEEEEEECCCCC-CCccEEE--ECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCC
Confidence            35789999 9999999999999999998754322 3355566  9999999865544449999999999887654322  


Q ss_pred             ----CCCeeEEEECCCCCEEEEec------------CCCcEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEeeCC
Q 014475           80 ----AEPIKPIAANSHGTYIAGGG------------QSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSED  143 (424)
Q Consensus        80 ----~~~v~~~~~s~~~~~l~~~~------------~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d  143 (424)
                          ...+..++|+|++++++++.            .++.+.+||..+++....+.. ...+..++|+|+++++++++.+
T Consensus        77 ~~~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~  155 (337)
T d1pbyb_          77 PEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWARDGSKLYGLGRD  155 (337)
T ss_dssp             TTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECTTSSCEEEESSS
T ss_pred             CcccccceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEeccc-cCCceEEEEcCCCCEEEEEcCC
Confidence                23456899999999998875            356799999999988888764 4568899999999999998654


Q ss_pred             CcEEEEeCCcccchhccccccc----------ceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceee
Q 014475          144 GCVRIWSLLTVFEECESQRASH----------LYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLR  213 (424)
Q Consensus       144 g~i~iwd~~~~~~~~~~~~~~~----------~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~  213 (424)
                        +.+||..++...........          ........+....................+..++.+.+||..+++...
T Consensus       156 --~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (337)
T d1pbyb_         156 --LHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAM  233 (337)
T ss_dssp             --EEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEE
T ss_pred             --cceeeeecCcEEEEeecCCccccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEE
Confidence              77899876432211110000          000000001111111111111000222233445679999998887654


Q ss_pred             eee--cCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCCC
Q 014475          214 NIV--FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDG  290 (424)
Q Consensus       214 ~~~--~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg  290 (424)
                      ...  +...+..+.++|++.+++.+  ++.+++||+.+.         +.+..+ .+...+.+++|+| |++|++++.|+
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~v~d~~~~---------~~~~~~-~~~~~~~~~~~s~dG~~l~v~~~~~  301 (337)
T d1pbyb_         234 REVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKN---------ASIKRV-PLPHSYYSVNVSTDGSTVWLGGALG  301 (337)
T ss_dssp             EEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTT---------EEEEEE-ECSSCCCEEEECTTSCEEEEESBSS
T ss_pred             EEecCCCcceEEEEecccceEEEEc--cccEEEEECCCC---------cEEEEE-cCCCCEEEEEECCCCCEEEEEeCCC
Confidence            432  56778889999999988776  478999999986         444444 3567789999999 99999999999


Q ss_pred             cEEEEeCCCCcEEEEEecc
Q 014475          291 MVRVWDPITHNIVRMFRLA  309 (424)
Q Consensus       291 ~i~iwd~~~~~~~~~~~~~  309 (424)
                      .|++||..+++.+.+++.+
T Consensus       302 ~i~v~D~~t~~~v~~i~~~  320 (337)
T d1pbyb_         302 DLAAYDAETLEKKGQVDLP  320 (337)
T ss_dssp             EEEEEETTTCCEEEEEECG
T ss_pred             cEEEEECCCCcEEEEEECC
Confidence            9999999999999998754

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.93  E-value=3.6e-25  Score=195.45  Aligned_cols=267  Identities=11%  Similarity=0.047  Sum_probs=197.1

Q ss_pred             CccccCCCCceeEEEEECCCCceeeeec---CCCCeeEEEECCCCCEE-EEecCCCcEEEEEccCcceeeeecccc----
Q 014475           51 QLREQPSASSGSILYWSWSKPQVEVKSL---PAEPIKPIAANSHGTYI-AGGGQSGDIYMWEVASGRLLKKWHAHY----  122 (424)
Q Consensus        51 ~~l~~~~~~~g~i~vwd~~~~~~~~~~~---~~~~v~~~~~s~~~~~l-~~~~~dg~v~iwd~~~~~~~~~~~~~~----  122 (424)
                      +++++++.+ ++|.+||+.+.+......   +...+.+++|+|||+++ ++++.++.|.+||+.+++.+..+..+.    
T Consensus         2 ~~~vt~~~d-~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~   80 (337)
T d1pbyb_           2 DYILAPARP-DKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEER   80 (337)
T ss_dssp             EEEEEEETT-TEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEE
T ss_pred             eEEEEEcCC-CEEEEEECCCCeEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCccc
Confidence            357777777 999999999988664332   34568899999999987 566789999999999999988876543    


Q ss_pred             -CCeEEEEEccCCcEEEEeeC------------CCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCce
Q 014475          123 -RAVTCLVFSEDGSFLISGSE------------DGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVS  189 (424)
Q Consensus       123 -~~i~~~~~~~~~~~l~s~~~------------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  189 (424)
                       ..+..++|+|++++++++..            +..+.+||..+           ......+. +...+..+++++++  
T Consensus        81 ~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~-----------~~~~~~~~-~~~~~~~~~~s~dg--  146 (337)
T d1pbyb_          81 VKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAET-----------LSRRKAFE-APRQITMLAWARDG--  146 (337)
T ss_dssp             EECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTT-----------TEEEEEEE-CCSSCCCEEECTTS--
T ss_pred             ccceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccC-----------CeEEEecc-ccCCceEEEEcCCC--
Confidence             34567999999999987764            56778888854           22333333 34567889999998  


Q ss_pred             eEEEEEeCCCcEEEEecCCCceeeeeecCcceeEEEECCCCCEEE------------------------EEeCCCcEEEE
Q 014475          190 ATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFY------------------------AGSRDGSIYIA  245 (424)
Q Consensus       190 ~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~------------------------~~~~dg~i~i~  245 (424)
                      .++++++.  .+.+||..+++....+..........+.|++..+.                        .+..++.+.+|
T Consensus       147 ~~l~~~~~--~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  224 (337)
T d1pbyb_         147 SKLYGLGR--DLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTM  224 (337)
T ss_dssp             SCEEEESS--SEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEE
T ss_pred             CEEEEEcC--CcceeeeecCcEEEEeecCCccccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEE
Confidence            78887764  47889999998887776433222223333322111                        11223457778


Q ss_pred             EcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCCCcEEEEEeccCCCeeEEEEEecCce
Q 014475          246 ALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLY  324 (424)
Q Consensus       246 d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~  324 (424)
                      +...+.        ........+...+..+.++| +.+++.+  ++.|++||+.+++.+..+. +...+.+++|+|||++
T Consensus       225 ~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~s~dG~~  293 (337)
T d1pbyb_         225 DLETGE--------MAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVP-LPHSYYSVNVSTDGST  293 (337)
T ss_dssp             ETTTCC--------EEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEE-CSSCCCEEEECTTSCE
T ss_pred             EcCCCc--------EEEEEecCCCcceEEEEecccceEEEEc--cccEEEEECCCCcEEEEEc-CCCCEEEEEECCCCCE
Confidence            877763        33344556777888889999 7776655  5889999999999999986 5678899999999999


Q ss_pred             eeeccCCCceeeccCCCCCCC
Q 014475          325 LNLGSFSNPHTSSRRHGSQLP  345 (424)
Q Consensus       325 l~~~~~d~~i~iw~~~~~~~~  345 (424)
                      |++++.|+.|++||..+.+..
T Consensus       294 l~v~~~~~~i~v~D~~t~~~v  314 (337)
T d1pbyb_         294 VWLGGALGDLAAYDAETLEKK  314 (337)
T ss_dssp             EEEESBSSEEEEEETTTCCEE
T ss_pred             EEEEeCCCcEEEEECCCCcEE
Confidence            999999999999999976543

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.93  E-value=6.2e-25  Score=194.68  Aligned_cols=275  Identities=10%  Similarity=-0.004  Sum_probs=200.4

Q ss_pred             eecCCCccccCCCCceeEEEEECCCCceeeee--cCCCCeeEEEECCCCCEE-EEecCCCcEEEEEccCcceeeeeccc-
Q 014475           46 FLASSQLREQPSASSGSILYWSWSKPQVEVKS--LPAEPIKPIAANSHGTYI-AGGGQSGDIYMWEVASGRLLKKWHAH-  121 (424)
Q Consensus        46 ~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~~--~~~~~v~~~~~s~~~~~l-~~~~~dg~v~iwd~~~~~~~~~~~~~-  121 (424)
                      |+++++++++++.+ ++|.+||+.+++.....  .+...+.+++|+|||+++ +++..++.|.+||+.+++.+..+... 
T Consensus         4 ~~~~~~~l~~~~~~-~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~~   82 (346)
T d1jmxb_           4 LKAGHEYMIVTNYP-NNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSS   82 (346)
T ss_dssp             CCTTCEEEEEEETT-TEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCC
T ss_pred             CCCCCcEEEEEcCC-CEEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeecccc
Confidence            89999999999998 99999999998876432  346678999999999987 55567899999999999888766432 


Q ss_pred             -----cCCeEEEEEccCCcEEEEee------------CCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEE
Q 014475          122 -----YRAVTCLVFSEDGSFLISGS------------EDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIG  184 (424)
Q Consensus       122 -----~~~i~~~~~~~~~~~l~s~~------------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  184 (424)
                           ...+..++|+|||+++++++            .++.+.+|+..++...        ..+.. ......+..+.++
T Consensus        83 ~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~--------~~~~~-~~~~~~~~~~~~~  153 (346)
T d1jmxb_          83 VPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEA--------KPVRT-FPMPRQVYLMRAA  153 (346)
T ss_dssp             STTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGB--------CCSEE-EECCSSCCCEEEC
T ss_pred             cccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceee--------eEEEe-eeccCceEEEEec
Confidence                 23466799999999988765            3667888887653211        01111 1122334445555


Q ss_pred             EcCceeEEEEEeCCCcEEEEecCCCceeeeeecCcceeEEEECCCCCEEEE--------------------------EeC
Q 014475          185 YGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYA--------------------------GSR  238 (424)
Q Consensus       185 ~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~--------------------------~~~  238 (424)
                      +++  ..+++   ++.+.+|++.+++.+..+........+.++|++..++.                          +..
T Consensus       154 ~~~--~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (346)
T d1jmxb_         154 DDG--SLYVA---GPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADL  228 (346)
T ss_dssp             TTS--CEEEE---SSSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEE
T ss_pred             CCC--EEEEe---CCcceEEEccCCCEEEEEecCCCccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccC
Confidence            554  44443   25689999999998888776555556666666544322                          223


Q ss_pred             CCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCCCcEEEEEeccCCCeeEEE
Q 014475          239 DGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNIL  317 (424)
Q Consensus       239 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~  317 (424)
                      ++.+.+|+.....        ........|...+..+.+++ +.+++... ++.|.+||..+++.+..+. +...+.+++
T Consensus       229 ~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~v~d~~~~~~~~~~~-~~~~~~~va  298 (346)
T d1jmxb_         229 LYGYLSVDLKTGK--------THTQEFADLTELYFTGLRSPKDPNQIYGV-LNRLAKYDLKQRKLIKAAN-LDHTYYCVA  298 (346)
T ss_dssp             EEEEEEEETTTCC--------EEEEEEEECSSCEEEEEECSSCTTEEEEE-ESEEEEEETTTTEEEEEEE-CSSCCCEEE
T ss_pred             CceEEEEECCCCc--------eEEEEeecccceeEEEEEeCCCCEEEEec-CCeEEEEECCCCcEEEEEc-CCCCEEEEE
Confidence            3456666766653        33445556778888888888 77776665 4679999999999998887 556799999


Q ss_pred             EEecCceeeeccCCCceeeccCCCCCCC
Q 014475          318 VVRRPLYLNLGSFSNPHTSSRRHGSQLP  345 (424)
Q Consensus       318 ~s~~~~~l~~~~~d~~i~iw~~~~~~~~  345 (424)
                      |+|||++|++++.|+.|++||..+.+..
T Consensus       299 ~s~DG~~l~v~~~d~~v~v~D~~t~~~i  326 (346)
T d1jmxb_         299 FDKKGDKLYLGGTFNDLAVFNPDTLEKV  326 (346)
T ss_dssp             ECSSSSCEEEESBSSEEEEEETTTTEEE
T ss_pred             EcCCCCEEEEEeCCCcEEEEECccCCEE
Confidence            9999999999999999999999877543

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.92  E-value=6.7e-24  Score=193.89  Aligned_cols=280  Identities=10%  Similarity=-0.018  Sum_probs=190.1

Q ss_pred             eecCCC-ccccCCCCceeEEEEECCCCceeeeecCCCCeeEEEECCCCCEEEEecCCCcEEEEEccCcceeeee-----c
Q 014475           46 FLASSQ-LREQPSASSGSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKW-----H  119 (424)
Q Consensus        46 ~~~~~~-~l~~~~~~~g~i~vwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~-----~  119 (424)
                      +..+.+ +++++..+||+|++||..+++..........+..++|||||+++++++.|+.|++||+.+++.....     .
T Consensus        26 ~~~d~~~~~~V~~~~dg~v~vwD~~t~~~~~~l~~g~~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~  105 (426)
T d1hzua2          26 NDLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGI  105 (426)
T ss_dssp             SCCCGGGEEEEEETTTTEEEEEETTTCSEEEEEECCSSEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCS
T ss_pred             ccCCCCeEEEEEEcCCCEEEEEECCCCcEEEEEeCCCCeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCC
Confidence            444433 3334344459999999999988766656678999999999999999999999999999988754322     3


Q ss_pred             cccCCeEEEEEccCCcEEEE-eeCCCcEEEEeCCcccchhcccccccceEEeecCCcCce-----------eEEEEEEcC
Q 014475          120 AHYRAVTCLVFSEDGSFLIS-GSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRI-----------TDIVIGYGG  187 (424)
Q Consensus       120 ~~~~~i~~~~~~~~~~~l~s-~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i-----------~~~~~~~~~  187 (424)
                      +|...+.+++|+|||+++++ +..++.+++||..++           ........|...+           ..+..++++
T Consensus       106 ~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~  174 (426)
T d1hzua2         106 EARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETL-----------EPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEH  174 (426)
T ss_dssp             EEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTC-----------CEEEEEECCEECSSSCCEESCCCEEEEEECSSS
T ss_pred             CCcceEEeeeecCCCCEEEEeecCCCeEEEEcCCcc-----------ceeEEeeccCCCccceeecCCCceeEEEECCCC
Confidence            56667778888999998754 457899999999663           2333334343333           334444444


Q ss_pred             ceeEEEEEeCCCcEEEEecCCCce--eeeeecCcceeEEEECCCCCEEEEEe-CCCcEEEEEcCCCCCCCCCcCceeeee
Q 014475          188 VSATIVSASEDRTCKVWSLLKGRL--LRNIVFPSVIDAIALDPAEHVFYAGS-RDGSIYIAALNAESPSTSSYGMHIIGS  264 (424)
Q Consensus       188 ~~~~l~~~~~d~~v~iwd~~~~~~--~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~  264 (424)
                      . ..+.+....+.+.+++......  ...+.+...+..+.++|++++++++. .+..+.+++..+..         .+..
T Consensus       175 ~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~---------~~~~  244 (426)
T d1hzua2         175 P-EFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRR---------LSAL  244 (426)
T ss_dssp             S-EEEEEETTTTEEEEEECSSSSSCEEEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTE---------EEEE
T ss_pred             C-EEEEecCCCCeEEEEEeccccceeeEEeccCCccEeeeECCCCcEEEeeeecccceeeeeccccc---------EEEE
Confidence            2 2222333344555555554432  23345677889999999999888876 45578899998863         2222


Q ss_pred             ec--ccCcCeEEEEecC-CC---EEEEeCCCCcEEEEeCCC-------CcEEEEEeccCCCeeEEEEEecCceee-----
Q 014475          265 LS--DHSKAVTCLAYST-GD---LLISGSEDGMVRVWDPIT-------HNIVRMFRLAKGPVNNILVVRRPLYLN-----  326 (424)
Q Consensus       265 ~~--~~~~~i~~~~~~~-~~---~l~t~~~dg~i~iwd~~~-------~~~~~~~~~~~~~v~~l~~s~~~~~l~-----  326 (424)
                      ..  .+..+.....+.+ +.   ..++.+.|+.+.+|+...       ++....+.+|...+..++|+||+++|+     
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~  324 (426)
T d1hzua2         245 VDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTF  324 (426)
T ss_dssp             EECSSCCCCSCCEEEEETTTEEEEEEECTTTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCCEECCTTCSEEEECCTT
T ss_pred             eccCCcccccceeeeecCCCCceEEeccCCCceEEEeeccccccccccceEeEEEecCCCceeEEEcCCCCceEEEeecC
Confidence            22  1222222232222 11   223345677888877554       478899999999999999999999999     


Q ss_pred             --eccCCCceeeccCCCCCCCC
Q 014475          327 --LGSFSNPHTSSRRHGSQLPP  346 (424)
Q Consensus       327 --~~~~d~~i~iw~~~~~~~~~  346 (424)
                        +++.|++|++||+.+.+...
T Consensus       325 ~~s~~~~~tv~vwd~~t~~~~~  346 (426)
T d1hzua2         325 NPDARISQSVAVFDLKNLDAKY  346 (426)
T ss_dssp             CSSHHHHTCEEEEETTCTTSCC
T ss_pred             CCCcccCCEEEEEECCCCCcCe
Confidence              46678999999998876543

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.92  E-value=6.5e-25  Score=200.39  Aligned_cols=282  Identities=11%  Similarity=-0.007  Sum_probs=184.4

Q ss_pred             ccccCCCCceeEEEEECCCCceeeeecCCCCeeEEEECCCCCEEEEecCCCcEEEEEccCccee--eee---ccccCCeE
Q 014475           52 LREQPSASSGSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLL--KKW---HAHYRAVT  126 (424)
Q Consensus        52 ~l~~~~~~~g~i~vwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~--~~~---~~~~~~i~  126 (424)
                      ++++...++|+|.|||..+.++.........+..++|||||+++++++.||.|++||+.+++..  ..+   ..|.+.+.
T Consensus        33 ~~~v~~~d~g~v~v~D~~t~~v~~~~~~g~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~  112 (432)
T d1qksa2          33 LFSVTLRDAGQIALIDGSTYEIKTVLDTGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIET  112 (432)
T ss_dssp             EEEEEETTTTEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEE
T ss_pred             EEEEEEcCCCEEEEEECCCCcEEEEEeCCCCeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCeEE
Confidence            3334444459999999999998877655668999999999999999999999999999887643  222   35666677


Q ss_pred             EEEEccCCcEE-EEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEe
Q 014475          127 CLVFSEDGSFL-ISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWS  205 (424)
Q Consensus       127 ~~~~~~~~~~l-~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd  205 (424)
                      +..|+|||++| ++++.++.|++||..++...................+......+.+++++. .++++...++.|.+||
T Consensus       113 s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~-~~~vs~~~~~~i~~~d  191 (432)
T d1qksa2         113 SKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRP-EFIVNVKETGKILLVD  191 (432)
T ss_dssp             CCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSS-EEEEEETTTTEEEEEE
T ss_pred             ecccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCC-EEEEEEccCCeEEEEE
Confidence            77788999986 678889999999997743221111000000000112445566778888874 4567777889999999


Q ss_pred             cCCCceee--eeecCcceeEEEECCCCCEEEEEeC-CCcEEEEEcCCCCCCCCCc--------C----------------
Q 014475          206 LLKGRLLR--NIVFPSVIDAIALDPAEHVFYAGSR-DGSIYIAALNAESPSTSSY--------G----------------  258 (424)
Q Consensus       206 ~~~~~~~~--~~~~~~~i~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~--------~----------------  258 (424)
                      ..+.+...  .+.....+..++++|+|+++++++. ++.+.++|...........        .                
T Consensus       192 ~~~~~~~~~~~i~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~  271 (432)
T d1qksa2         192 YTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWAT  271 (432)
T ss_dssp             TTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEEEEE
T ss_pred             ccCCCcceEEEEcccCccccceECCCCCEEEEeccccceEEEeecccceEEEEeccCccccccCcccceecCCCCceecc
Confidence            98876543  4456778899999999998887765 4578888887653210000        0                


Q ss_pred             ----ceeee-------eecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCCCcEEEEEeccCCCeeEEEEEecCceee
Q 014475          259 ----MHIIG-------SLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLN  326 (424)
Q Consensus       259 ----~~~~~-------~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~  326 (424)
                          ...+.       ....|...+....++| +..+++++.+...++|+..+..      .|.....++++ ||++.|+
T Consensus       272 ~~lg~~~v~~~~~~~~~~~~~~~~v~~~~~~~~g~~~~~~s~p~~~~lw~~~~~~------~~~~~~~sv~v-pDg~~la  344 (432)
T d1qksa2         272 SHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLN------PEAEISGSVAV-FDIKAMT  344 (432)
T ss_dssp             EBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTC------SSHHHHTCEEE-EEGGGCC
T ss_pred             cccCCceEEecccccccccccccEEEEEEEcCCCCeEEEEecCCccceeecccCC------CCCCeeeEEEE-Eechhhc
Confidence                00000       0111223344445555 4455555555555566543321      12222334554 8999999


Q ss_pred             eccCCCceeeccCCC
Q 014475          327 LGSFSNPHTSSRRHG  341 (424)
Q Consensus       327 ~~~~d~~i~iw~~~~  341 (424)
                      +++.|+.+++|+...
T Consensus       345 ~~s~d~~~k~w~~~~  359 (432)
T d1qksa2         345 GDGSDPEFKTLPIAE  359 (432)
T ss_dssp             CSSSCCCEEEECHHH
T ss_pred             ccccCCceEeccccc
Confidence            999999999998753

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.91  E-value=1.5e-22  Score=179.21  Aligned_cols=291  Identities=13%  Similarity=0.102  Sum_probs=199.2

Q ss_pred             EEEeecCCCCCceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCceeeeecC---
Q 014475            3 LLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSLP---   79 (424)
Q Consensus         3 ~~lat~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~~~~---   79 (424)
                      .+|++++ .|++|.|||+++++.+++++....  .....++  |+|||+++++++..++.|.+||+.+++.......   
T Consensus         9 ~~l~~~~-~~~~v~v~D~~t~~~~~t~~~~~~--~~p~~l~--~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~~~   83 (346)
T d1jmxb_           9 EYMIVTN-YPNNLHVVDVASDTVYKSCVMPDK--FGPGTAM--MAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSV   83 (346)
T ss_dssp             EEEEEEE-TTTEEEEEETTTTEEEEEEECSSC--CSSCEEE--ECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCS
T ss_pred             cEEEEEc-CCCEEEEEECCCCCEEEEEEcCCC--CCcceEE--ECCCCCEEEEEECCCCcEEEEeCccCeeeeeeccccc
Confidence            5789999 999999999999999998864321  3345666  9999999876665559999999998876544322   


Q ss_pred             ----CCCeeEEEECCCCCEEEEec------------CCCcEEEEEccCcceeeeeccc--cCCeEEEEEccCCcEEEEee
Q 014475           80 ----AEPIKPIAANSHGTYIAGGG------------QSGDIYMWEVASGRLLKKWHAH--YRAVTCLVFSEDGSFLISGS  141 (424)
Q Consensus        80 ----~~~v~~~~~s~~~~~l~~~~------------~dg~v~iwd~~~~~~~~~~~~~--~~~i~~~~~~~~~~~l~s~~  141 (424)
                          ...+..++|+|||+++++++            .++.+.+|+..+++....+..+  ...+..+.+++++..++++ 
T Consensus        84 ~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  162 (346)
T d1jmxb_          84 PGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAG-  162 (346)
T ss_dssp             TTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSCEEEES-
T ss_pred             ccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeeccCceEEEEecCCCEEEEeC-
Confidence                12467899999999998765            4677999999988776655443  2456667777777766543 


Q ss_pred             CCCcEEEEeCCcccchhccccccc----------ceEEeecCCcCceeEE--EEEEcCceeEEEEEeCCCcEEEEecCCC
Q 014475          142 EDGCVRIWSLLTVFEECESQRASH----------LYLHSFTGHTLRITDI--VIGYGGVSATIVSASEDRTCKVWSLLKG  209 (424)
Q Consensus       142 ~dg~i~iwd~~~~~~~~~~~~~~~----------~~~~~~~~~~~~i~~~--~~~~~~~~~~l~~~~~d~~v~iwd~~~~  209 (424)
                        +.+.+|++.++...........          ..+.........+...  ..........+.++..++.+.+||..++
T Consensus       163 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (346)
T d1jmxb_         163 --PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTG  240 (346)
T ss_dssp             --SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTC
T ss_pred             --CcceEEEccCCCEEEEEecCCCccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCceEEEEECCCC
Confidence              4688999866432211110000          0000000011111111  1111111134555666778999999988


Q ss_pred             ceeeeee--cCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEe
Q 014475          210 RLLRNIV--FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISG  286 (424)
Q Consensus       210 ~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~  286 (424)
                      .......  +...+..+.+++++..++.... +.+.+||..++         +.+..+. +...+.+++|+| +++++++
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~v~d~~~~---------~~~~~~~-~~~~~~~va~s~DG~~l~v~  309 (346)
T d1jmxb_         241 KTHTQEFADLTELYFTGLRSPKDPNQIYGVL-NRLAKYDLKQR---------KLIKAAN-LDHTYYCVAFDKKGDKLYLG  309 (346)
T ss_dssp             CEEEEEEEECSSCEEEEEECSSCTTEEEEEE-SEEEEEETTTT---------EEEEEEE-CSSCCCEEEECSSSSCEEEE
T ss_pred             ceEEEEeecccceeEEEEEeCCCCEEEEecC-CeEEEEECCCC---------cEEEEEc-CCCCEEEEEEcCCCCEEEEE
Confidence            7665543  6677888999998888776654 57999999886         4444443 456799999999 9999999


Q ss_pred             CCCCcEEEEeCCCCcEEEEEeccCCC
Q 014475          287 SEDGMVRVWDPITHNIVRMFRLAKGP  312 (424)
Q Consensus       287 ~~dg~i~iwd~~~~~~~~~~~~~~~~  312 (424)
                      +.|+.|++||+++++.+.+++.+.++
T Consensus       310 ~~d~~v~v~D~~t~~~i~~i~~p~g~  335 (346)
T d1jmxb_         310 GTFNDLAVFNPDTLEKVKNIKLPGGD  335 (346)
T ss_dssp             SBSSEEEEEETTTTEEEEEEECSSSC
T ss_pred             eCCCcEEEEECccCCEEEEEECCCCC
Confidence            99999999999999999999966553

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.88  E-value=1.2e-19  Score=159.40  Aligned_cols=292  Identities=10%  Similarity=0.081  Sum_probs=190.1

Q ss_pred             Ce-EEEeecCCCCCceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCcee----e
Q 014475            1 ME-LLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVE----V   75 (424)
Q Consensus         1 ~e-~~lat~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~----~   75 (424)
                      || ..+++++ .|++|+|||+.+...+..++... +...+..++  |+|||++|++++.+++.|.+|++......    .
T Consensus         2 ~~~~v~v~~~-~~~~I~v~~~~~~~~l~~~~~~~-~~~~v~~la--~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~   77 (333)
T d1ri6a_           2 LKQTVYIASP-ESQQIHVWNLNHEGALTLTQVVD-VPGQVQPMV--VSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAA   77 (333)
T ss_dssp             CEEEEEEEEG-GGTEEEEEEECTTSCEEEEEEEE-CSSCCCCEE--ECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEE
T ss_pred             CceEEEEECC-CCCcEEEEEEcCCCCeEEEEEEc-CCCCEeEEE--EeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEee
Confidence            45 3446666 89999999987654443333111 234566667  99999999777766699999999765432    2


Q ss_pred             eecCCCCeeEEEECCCCCEEEEecC-CCcEEEEEccCcceeee--eccccCCeEEEEEccCCcEEEEeeCC-CcEEEEeC
Q 014475           76 KSLPAEPIKPIAANSHGTYIAGGGQ-SGDIYMWEVASGRLLKK--WHAHYRAVTCLVFSEDGSFLISGSED-GCVRIWSL  151 (424)
Q Consensus        76 ~~~~~~~v~~~~~s~~~~~l~~~~~-dg~v~iwd~~~~~~~~~--~~~~~~~i~~~~~~~~~~~l~s~~~d-g~i~iwd~  151 (424)
                      .......+..++|+|||++|++++. ++.|.+|+.........  ...+...+.++.++|+++++++++.+ ..+.+|+.
T Consensus        78 ~~~~~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~  157 (333)
T d1ri6a_          78 ESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTV  157 (333)
T ss_dssp             EEECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEE
T ss_pred             ecccCCCceEEEEcCCCCEEeecccCCCceeeeccccccceecccccCCCccceEEEeeecceeeeccccccceeeEEEe
Confidence            2334566788999999999998875 67899998876654433  34466778899999999988877754 56889987


Q ss_pred             CcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCcee----eeee-------cCcc
Q 014475          152 LTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLL----RNIV-------FPSV  220 (424)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~----~~~~-------~~~~  220 (424)
                      ........     ................++|++++. ....+....+...+|+.......    ....       ....
T Consensus       158 ~~~~~~~~-----~~~~~~~~~~g~~p~~i~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (333)
T d1ri6a_         158 SDDGHLVA-----QDPAEVTTVEGAGPRHMVFHPNEQ-YAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRW  231 (333)
T ss_dssp             CTTSCEEE-----EEEEEEECSTTCCEEEEEECTTSS-EEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCC
T ss_pred             ccCCccee-----eeceeeeeecCCCccEEEEeccce-eEEeeccccCceEEEeecccccceeeeeeeeeeecCCCcccc
Confidence            55221100     001111223445567888988873 33444556677788876533211    1111       2245


Q ss_pred             eeEEEECCCCCEEEEE-eCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeC-CCCcEEEE--
Q 014475          221 IDAIALDPAEHVFYAG-SRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGS-EDGMVRVW--  295 (424)
Q Consensus       221 i~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~-~dg~i~iw--  295 (424)
                      ...++++++++++++. ..++.+.+|++......      ........+...+..++|+| |++|++++ .++.|++|  
T Consensus       232 ~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~p~~~a~spDGk~l~va~~~~~~v~v~~i  305 (333)
T d1ri6a_         232 AADIHITPDGRHLYACDRTASLITVFSVSEDGSV------LSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEI  305 (333)
T ss_dssp             EEEEEECTTSSEEEEEETTTTEEEEEEECTTSCC------EEEEEEEECSSSCCCEEECTTSSEEEEECTTTCEEEEEEE
T ss_pred             ceeEEEecccCceeeecccCCeEEEEEEcCCCCE------EEEEEEeCCCCCeeEEEEeCCCCEEEEEECCCCeEEEEEE
Confidence            6678899999877665 45678999998765321      12222233446678899999 88776654 56889998  


Q ss_pred             eCCCCcE--EEEEec
Q 014475          296 DPITHNI--VRMFRL  308 (424)
Q Consensus       296 d~~~~~~--~~~~~~  308 (424)
                      |..+|++  +..+..
T Consensus       306 d~~tG~l~~~~~~~~  320 (333)
T d1ri6a_         306 VGEQGLLHEKGRYAV  320 (333)
T ss_dssp             ETTTTEEEEEEEEEC
T ss_pred             ECCCCcEEEEEeccC
Confidence            5566654  344543

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.87  E-value=2.8e-20  Score=163.60  Aligned_cols=275  Identities=12%  Similarity=0.082  Sum_probs=185.0

Q ss_pred             cccCCCCceeEEEEECCCCc-ee--eeecCCCCeeEEEECCCCCEEEEe-cCCCcEEEEEccCcceeeee---ccccCCe
Q 014475           53 REQPSASSGSILYWSWSKPQ-VE--VKSLPAEPIKPIAANSHGTYIAGG-GQSGDIYMWEVASGRLLKKW---HAHYRAV  125 (424)
Q Consensus        53 l~~~~~~~g~i~vwd~~~~~-~~--~~~~~~~~v~~~~~s~~~~~l~~~-~~dg~v~iwd~~~~~~~~~~---~~~~~~i  125 (424)
                      +++++.+|++|++|+++... ..  ....+.+.+..++|+|||++|+++ ..|+.|++|++........+   ..+...+
T Consensus         6 v~v~~~~~~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p   85 (333)
T d1ri6a_           6 VYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSL   85 (333)
T ss_dssp             EEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCC
T ss_pred             EEEECCCCCcEEEEEEcCCCCeEEEEEEcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCCc
Confidence            33444445999999987543 22  334678899999999999998554 45899999999876543333   2244567


Q ss_pred             EEEEEccCCcEEEEeeC-CCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEe-CCCcEEE
Q 014475          126 TCLVFSEDGSFLISGSE-DGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSAS-EDRTCKV  203 (424)
Q Consensus       126 ~~~~~~~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~-~d~~v~i  203 (424)
                      ..++|+|||++|++++. ++.+.+|+....         ..........+...+.++.+++++  +.+++++ .+..+.+
T Consensus        86 ~~l~~spDg~~l~v~~~~~~~v~~~~~~~~---------~~~~~~~~~~~~~~~~~v~~s~d~--~~~~~~~~~~~~i~~  154 (333)
T d1ri6a_          86 THISTDHQGQFVFVGSYNAGNVSVTRLEDG---------LPVGVVDVVEGLDGCHSANISPDN--RTLWVPALKQDRICL  154 (333)
T ss_dssp             SEEEECTTSSEEEEEETTTTEEEEEEEETT---------EEEEEEEEECCCTTBCCCEECTTS--SEEEEEEGGGTEEEE
T ss_pred             eEEEEcCCCCEEeecccCCCceeeeccccc---------cceecccccCCCccceEEEeeecc--eeeeccccccceeeE
Confidence            78999999999998875 668899987542         222233445567778889999998  5555555 5567999


Q ss_pred             EecCCCceeeeee-------cCcceeEEEECCCCCEEEEEe-CCCcEEEEEcCCCCCCCCCcCceeeeee---cccCcCe
Q 014475          204 WSLLKGRLLRNIV-------FPSVIDAIALDPAEHVFYAGS-RDGSIYIAALNAESPSTSSYGMHIIGSL---SDHSKAV  272 (424)
Q Consensus       204 wd~~~~~~~~~~~-------~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~---~~~~~~i  272 (424)
                      |+...........       .......++|++++..++... ..+...+++...........  ..+...   .......
T Consensus       155 ~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~  232 (333)
T d1ri6a_         155 FTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECV--QTLDMMPENFSDTRWA  232 (333)
T ss_dssp             EEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEE--EEEECSCTTCCSCCCE
T ss_pred             EEeccCCcceeeeceeeeeecCCCccEEEEeccceeEEeeccccCceEEEeecccccceeee--eeeeeeecCCCccccc
Confidence            9987654332221       335567899999998887665 55678888876543211100  011111   1233456


Q ss_pred             EEEEecC-CCE-EEEeCCCCcEEEEeCCCCcEEEEE---eccCCCeeEEEEEecCceeeec-cCCCceeeccCC
Q 014475          273 TCLAYST-GDL-LISGSEDGMVRVWDPITHNIVRMF---RLAKGPVNNILVVRRPLYLNLG-SFSNPHTSSRRH  340 (424)
Q Consensus       273 ~~~~~~~-~~~-l~t~~~dg~i~iwd~~~~~~~~~~---~~~~~~v~~l~~s~~~~~l~~~-~~d~~i~iw~~~  340 (424)
                      ..+++++ +++ ++++..++.+.+|++........+   ......+..++|+|||++|+++ ..++.|++|++.
T Consensus       233 ~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~spDGk~l~va~~~~~~v~v~~id  306 (333)
T d1ri6a_         233 ADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEIV  306 (333)
T ss_dssp             EEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTTTCEEEEEEEE
T ss_pred             eeEEEecccCceeeecccCCeEEEEEEcCCCCEEEEEEEeCCCCCeeEEEEeCCCCEEEEEECCCCeEEEEEEE
Confidence            7788888 654 455567889999988765433332   2344567899999999987665 567889999664

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.87  E-value=1.8e-19  Score=161.13  Aligned_cols=292  Identities=8%  Similarity=-0.126  Sum_probs=196.4

Q ss_pred             CCCceEEecceeecCCCccccCCC----CceeEEEEECCCCceeeeecCCCCeeEEEECCCCCEEEEec----------C
Q 014475           35 PPHGLACVGQRFLASSQLREQPSA----SSGSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGG----------Q  100 (424)
Q Consensus        35 ~~~~v~~~~~~~~~~~~~l~~~~~----~~g~i~vwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~----------~  100 (424)
                      +...+..++  ++|+|+.+++...    ..+.|.+||..+++..... ..+....++|+|||++|++++          .
T Consensus        19 ~~~p~~~~a--~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~-~~~~~~~~a~SpDG~~l~va~~~~~~~~~~~~   95 (373)
T d2madh_          19 ADGPTNDEA--PGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHV-NGGFLPNPVAAHSGSEFALASTSFSRIAKGKR   95 (373)
T ss_pred             CCCCccccc--cCCCCCEEEEEcccccCCCceEEEEECCCCCEEEEE-eCCCCccEEEcCCCCEEEEEeecCCccccccc
Confidence            445566667  9999999876522    1267999999988876543 333344799999999999874          3


Q ss_pred             CCcEEEEEccCcceeeeeccccCCe-------EEEEEccCCcEEEEee--CCCcEEEEeCCcccchhcccccccceEEee
Q 014475          101 SGDIYMWEVASGRLLKKWHAHYRAV-------TCLVFSEDGSFLISGS--EDGCVRIWSLLTVFEECESQRASHLYLHSF  171 (424)
Q Consensus       101 dg~v~iwd~~~~~~~~~~~~~~~~i-------~~~~~~~~~~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  171 (424)
                      ++.|.+||..+++.+..+..+....       ..+.|+++++.++...  .++.+.+|+....           .    .
T Consensus        96 ~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~-----------~----~  160 (373)
T d2madh_          96 TDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGS-----------S----D  160 (373)
T ss_pred             ceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccCC-----------e----E
Confidence            5789999999999888876655433       4567888888765544  3557788887441           1    1


Q ss_pred             cCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeeec-------CcceeEEEECCCCCEEEEEeCCCcEEE
Q 014475          172 TGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVF-------PSVIDAIALDPAEHVFYAGSRDGSIYI  244 (424)
Q Consensus       172 ~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~-------~~~i~~~~~~~~~~~l~~~~~dg~i~i  244 (424)
                      ..+.....++.+++++. ..+++.+.|+.+.+||...++.......       ........+.+++. ++..+.++.+.+
T Consensus       161 ~~~~~~~~~~~~s~~g~-~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~  238 (373)
T d2madh_         161 DQLLSSPTCYHIHPGAP-STFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGR-IVWPVYSGKILQ  238 (373)
T ss_pred             EEEeccceeEEEecCCC-cEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECCCce-EEEecCCceEEE
Confidence            22333456788999885 5667889999999999988877665541       12233445555554 445567888999


Q ss_pred             EEcCCCCCCCCCc-Cce--eeeeecccCcCeEEEEecC-----------CCEEEEeCCCCcEEEEeCCCCcEEEEEeccC
Q 014475          245 AALNAESPSTSSY-GMH--IIGSLSDHSKAVTCLAYST-----------GDLLISGSEDGMVRVWDPITHNIVRMFRLAK  310 (424)
Q Consensus       245 ~d~~~~~~~~~~~-~~~--~~~~~~~~~~~i~~~~~~~-----------~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~  310 (424)
                      |+........... ...  ..............+++++           +..+++...++.+.+||..+++.+..+. +.
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~~~~~~~-~~  317 (373)
T d2madh_         239 ADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQIS-LG  317 (373)
T ss_pred             EEcCCCeEEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEECCCCcEEEEec-CC
Confidence            9987753210000 000  0000000011122233333           4455666778899999999999999886 56


Q ss_pred             CCeeEEEEEecCce--eeeccCCCceeeccCCCCCCCCC
Q 014475          311 GPVNNILVVRRPLY--LNLGSFSNPHTSSRRHGSQLPPP  347 (424)
Q Consensus       311 ~~v~~l~~s~~~~~--l~~~~~d~~i~iw~~~~~~~~~~  347 (424)
                      ..+..++|+|||+.  +++++.|+.|++||+.+++....
T Consensus       318 ~~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~tg~~~~~  356 (373)
T d2madh_         318 HDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQS  356 (373)
T ss_pred             CCeeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEE
Confidence            77899999999984  46889999999999998876433

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.84  E-value=9.1e-18  Score=149.90  Aligned_cols=282  Identities=8%  Similarity=-0.085  Sum_probs=190.4

Q ss_pred             CCCceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCC---------CceeEEEEECCCCceeeeec-CC
Q 014475           11 ADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSA---------SSGSILYWSWSKPQVEVKSL-PA   80 (424)
Q Consensus        11 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~---------~~g~i~vwd~~~~~~~~~~~-~~   80 (424)
                      .++.|.+||.++++.+.++..+..+     .++  |+|||++++++..         .++.|.+||..+++...... +.
T Consensus        45 ~~~~v~v~D~~tg~~~~~~~~~~~~-----~~a--~SpDG~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~  117 (373)
T d2madh_          45 AIIQQWVLDAGSGSILGHVNGGFLP-----NPV--AAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPD  117 (373)
T ss_pred             CCceEEEEECCCCCEEEEEeCCCCc-----cEE--EcCCCCEEEEEeecCCcccccccceEEEEEECCCCcEEEEEecCC
Confidence            3467999999999999988755432     355  9999999998753         23789999999888654432 22


Q ss_pred             C-------CeeEEEECCCCCEEEEec--CCCcEEEEEccCcceeeeeccccCCeEEEEEccCCcEE-EEeeCCCcEEEEe
Q 014475           81 E-------PIKPIAANSHGTYIAGGG--QSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFL-ISGSEDGCVRIWS  150 (424)
Q Consensus        81 ~-------~v~~~~~s~~~~~l~~~~--~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l-~s~~~dg~i~iwd  150 (424)
                      .       ....+.|+++++.++...  .++.+.+|+..+.+....    .....++.++|+++.+ ++.+.|+.+.+|+
T Consensus       118 ~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~s~~g~~~~v~~~~dg~~~~~~  193 (373)
T d2madh_         118 APRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSDDQL----LSSPTCYHIHPGAPSTFYLLCAQGGLAKTD  193 (373)
T ss_pred             cceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccCCeEEEE----eccceeEEEecCCCcEEEEEcCCCeEEEEE
Confidence            2       235678899988776554  456789999877665443    3346788999988754 6788999999999


Q ss_pred             CCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeee-------------c
Q 014475          151 LLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-------------F  217 (424)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~-------------~  217 (424)
                      .........       ..................+.+. ..++..+.++.+.+|+..+........             .
T Consensus       194 ~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (373)
T d2madh_         194 HAGGAAGAG-------LVGAMLTAAQNLLTQPAQANKS-GRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWR  265 (373)
T ss_pred             cCCceeeEE-------EeeeccccCccceeeeEEECCC-ceEEEecCCceEEEEEcCCCeEEEEEeeccccCcEEeeeec
Confidence            866322110       0001111111122222233332 455666778899999987765432221             1


Q ss_pred             CcceeEEEECCCCCEEE----------EEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CC--EEE
Q 014475          218 PSVIDAIALDPAEHVFY----------AGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GD--LLI  284 (424)
Q Consensus       218 ~~~i~~~~~~~~~~~l~----------~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~--~l~  284 (424)
                      +.....++++|++..++          ....++.+.+||..++.         .+..+ .+...+..++|+| ++  +++
T Consensus       266 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~---------~~~~~-~~~~~~~~~a~spDG~~~l~v  335 (373)
T d2madh_         266 PGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQ---------TSSQI-SLGHDVDAISVAQDGGPDLYA  335 (373)
T ss_pred             cCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEECCCCc---------EEEEe-cCCCCeeEEEECCCCCEEEEE
Confidence            23344556666665544          44556788999998863         34433 3667789999999 76  457


Q ss_pred             EeCCCCcEEEEeCCCCcEEEEEeccCCCeeEEEEEec
Q 014475          285 SGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRR  321 (424)
Q Consensus       285 t~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~  321 (424)
                      +++.|+.|++||+.+++.++++..+....+.+++.++
T Consensus       336 t~~~d~~v~v~D~~tg~~~~~~~~~g~~P~~l~~~~~  372 (373)
T d2madh_         336 LSAGTEVLHIYDAGAGDQDQSTVELGSGPQVLSVMNE  372 (373)
T ss_pred             EeCCCCeEEEEECCCCCEEEEECCCCCCCcEEEEecC
Confidence            8899999999999999999999988777777777654

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.84  E-value=7.8e-19  Score=155.73  Aligned_cols=275  Identities=10%  Similarity=-0.009  Sum_probs=186.4

Q ss_pred             CCCceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCC---------CceeEEEEECCCCceeeeec-C-
Q 014475           11 ADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSA---------SSGSILYWSWSKPQVEVKSL-P-   79 (424)
Q Consensus        11 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~---------~~g~i~vwd~~~~~~~~~~~-~-   79 (424)
                      .+++|.+||..+++.+.++..+..     ..++  |+|||+++++++.         .++.|.+||..+++...... + 
T Consensus        26 ~~~~v~v~D~~tg~~~~~~~~g~~-----~~~a--~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~   98 (355)
T d2bbkh_          26 AVTQQFVIDGEAGRVIGMIDGGFL-----PNPV--VADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPD   98 (355)
T ss_dssp             SSEEEEEEETTTTEEEEEEEECSS-----CEEE--ECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETT
T ss_pred             CcCeEEEEECCCCcEEEEEECCCC-----CceE--EcCCCCEEEEEeCCCccccccCCCCEEEEEECCCCCEEEEEecCC
Confidence            466799999999999998875432     2456  9999999987542         24899999999887654321 1 


Q ss_pred             ------CCCeeEEEECCCCCEEEEec--CCCcEEEEEccCcceeeeeccccC-------CeEEEEEccCCcEEEEe-eCC
Q 014475           80 ------AEPIKPIAANSHGTYIAGGG--QSGDIYMWEVASGRLLKKWHAHYR-------AVTCLVFSEDGSFLISG-SED  143 (424)
Q Consensus        80 ------~~~v~~~~~s~~~~~l~~~~--~dg~v~iwd~~~~~~~~~~~~~~~-------~i~~~~~~~~~~~l~s~-~~d  143 (424)
                            ......++|+|++++++++.  .+..+.+|+..+++.+..+..+..       ....+.++++++.++.. ..+
T Consensus        99 ~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~v~~~~~  178 (355)
T d2bbkh_          99 APRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTE  178 (355)
T ss_dssp             CCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSS
T ss_pred             cceeecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCCcEeeEEecCCcceEeecCCcceEEEcCCCCEEEEEecCC
Confidence                  23446789999999887764  457899999999988877654322       22334455554444332 223


Q ss_pred             CcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeee--e-----
Q 014475          144 GCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNI--V-----  216 (424)
Q Consensus       144 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~--~-----  216 (424)
                      +.+.+++....                ...+...+....+.+.+  ..++.++.++.+.+|++..++.....  .     
T Consensus       179 ~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  240 (355)
T d2bbkh_         179 GTPEITHTEVF----------------HPEDEFLINHPAYSQKA--GRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEA  240 (355)
T ss_dssp             SCCEEEECCCC----------------SCTTSCBCSCCEEETTT--TEEEEEBTTSEEEEEECTTSSCEECCCEESSCHH
T ss_pred             CeEEEEecccc----------------cceecceeeeccccCCC--CeEEEecCCCeEEEEecCCCcEEEEeccCCcccc
Confidence            33444443221                12233445555666666  67888899999999999877542211  1     


Q ss_pred             ------cCcceeEEEECCCCCEEEEEeCC----------CcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-
Q 014475          217 ------FPSVIDAIALDPAEHVFYAGSRD----------GSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-  279 (424)
Q Consensus       217 ------~~~~i~~~~~~~~~~~l~~~~~d----------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-  279 (424)
                            .+.....+++++++..++....+          ..|.+||..+..         .+..+. +...+.+++|+| 
T Consensus       241 ~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~---------~~~~~~-~~~~~~~~a~spD  310 (355)
T d2bbkh_         241 ERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGE---------RLAKFE-MGHEIDSINVSQD  310 (355)
T ss_dssp             HHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCC---------EEEEEE-EEEEECEEEECCS
T ss_pred             eEeeeeeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCCCc---------EEEEec-CCCCEEEEEEcCC
Confidence                  12234568899999988876544          369999999863         344443 345688999999 


Q ss_pred             CC--EEEEeCCCCcEEEEeCCCCcEEEEEeccCCCeeEEEEEe
Q 014475          280 GD--LLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVR  320 (424)
Q Consensus       280 ~~--~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~  320 (424)
                      ++  ++++++.|+.|++||+++++.++++..+...-..+.+.+
T Consensus       311 G~~~l~v~~~~d~~i~v~D~~tg~~~~~i~~~G~~p~~i~~~d  353 (355)
T d2bbkh_         311 EKPLLYALSTGDKTLYIHDAESGEELRSVNQLGHGPQVITTAD  353 (355)
T ss_dssp             SSCEEEEEETTTTEEEEEETTTCCEEEEECCCCSSCCEEECCC
T ss_pred             CCeEEEEEECCCCEEEEEECCCCCEEEEEeCcCCCccEEEeCC
Confidence            66  466778899999999999999999987655444444443

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.83  E-value=2.4e-19  Score=159.04  Aligned_cols=275  Identities=10%  Similarity=-0.006  Sum_probs=180.0

Q ss_pred             eecCCCccccCC----CCceeEEEEECCCCceeeeecCCCCeeEEEECCCCCEEEEec----------CCCcEEEEEccC
Q 014475           46 FLASSQLREQPS----ASSGSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGG----------QSGDIYMWEVAS  111 (424)
Q Consensus        46 ~~~~~~~l~~~~----~~~g~i~vwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~----------~dg~v~iwd~~~  111 (424)
                      .+|+++.++++.    ..++.|.+||..+++..... +.+....++|||||++|++++          .++.|++||+.+
T Consensus         9 ~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~-~~g~~~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t   87 (355)
T d2bbkh_           9 PAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMI-DGGFLPNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVT   87 (355)
T ss_dssp             CCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEE-EECSSCEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTT
T ss_pred             eCCCCCEEEEEecccCCCcCeEEEEECCCCcEEEEE-ECCCCCceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCC
Confidence            679999886542    11278999999988765433 233444799999999887653          478899999999


Q ss_pred             cceeeeecccc-------CCeEEEEEccCCcEEEEee--CCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEE
Q 014475          112 GRLLKKWHAHY-------RAVTCLVFSEDGSFLISGS--EDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIV  182 (424)
Q Consensus       112 ~~~~~~~~~~~-------~~i~~~~~~~~~~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  182 (424)
                      ++.+..+..+.       .....+.|+|++++++++.  .+..+.+|+..++.           ....+..+...   ..
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~---~~  153 (355)
T d2bbkh_          88 LLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKA-----------FKRMLDVPDCY---HI  153 (355)
T ss_dssp             CCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTE-----------EEEEEECCSEE---EE
T ss_pred             CCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCCc-----------EeeEEecCCcc---eE
Confidence            98887765432       2345689999999887764  45678999996632           22223222211   11


Q ss_pred             EEEcCceeEEEEEeCCCcEEEEecCCCceeeeee-------cCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCC
Q 014475          183 IGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-------FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTS  255 (424)
Q Consensus       183 ~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~-------~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~  255 (424)
                      +....  ...+..+.|+....+............       +...+....+.+++..++.++.++.+++|++..+...  
T Consensus       154 ~~~~~--~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--  229 (355)
T d2bbkh_         154 FPTAP--DTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAK--  229 (355)
T ss_dssp             EEEET--TEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCE--
T ss_pred             eecCC--cceEEEcCCCCEEEEEecCCCeEEEEecccccceecceeeeccccCCCCeEEEecCCCeEEEEecCCCcEE--
Confidence            11111  233344445554444433322222111       2334556677888888999999999999999886521  


Q ss_pred             CcCceeeeeecc----------cCcCeEEEEecC-CCEEEEeCCC----------CcEEEEeCCCCcEEEEEeccCCCee
Q 014475          256 SYGMHIIGSLSD----------HSKAVTCLAYST-GDLLISGSED----------GMVRVWDPITHNIVRMFRLAKGPVN  314 (424)
Q Consensus       256 ~~~~~~~~~~~~----------~~~~i~~~~~~~-~~~l~t~~~d----------g~i~iwd~~~~~~~~~~~~~~~~v~  314 (424)
                           .+.....          .......+++++ +..++....+          ..|.+||..+++.+..+.. ...+.
T Consensus       230 -----~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~~~~-~~~~~  303 (355)
T d2bbkh_         230 -----FLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEM-GHEID  303 (355)
T ss_dssp             -----ECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE-EEEEC
T ss_pred             -----EEeccCCcccceEeeeeeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCCCcEEEEecC-CCCEE
Confidence                 1111111          112334577788 6666654332          4699999999999998874 45688


Q ss_pred             EEEEEecCc--eeeeccCCCceeeccCCCCCCC
Q 014475          315 NILVVRRPL--YLNLGSFSNPHTSSRRHGSQLP  345 (424)
Q Consensus       315 ~l~~s~~~~--~l~~~~~d~~i~iw~~~~~~~~  345 (424)
                      +++|+|||+  ++++++.|+.|++||..+++..
T Consensus       304 ~~a~spDG~~~l~v~~~~d~~i~v~D~~tg~~~  336 (355)
T d2bbkh_         304 SINVSQDEKPLLYALSTGDKTLYIHDAESGEEL  336 (355)
T ss_dssp             EEEECCSSSCEEEEEETTTTEEEEEETTTCCEE
T ss_pred             EEEEcCCCCeEEEEEECCCCEEEEEECCCCCEE
Confidence            999999997  4567788999999999988653

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.78  E-value=3.7e-17  Score=150.75  Aligned_cols=322  Identities=10%  Similarity=0.019  Sum_probs=190.5

Q ss_pred             CCCceEEEeCCCCceEEEeeCC--CCCCCceEEecceeecCCCccccCCC--------CceeEEEEECCCCceeeeecCC
Q 014475           11 ADTGIGCWDLESGAEQLRYKSC--ASPPHGLACVGQRFLASSQLREQPSA--------SSGSILYWSWSKPQVEVKSLPA   80 (424)
Q Consensus        11 ~dg~i~vwd~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~l~~~~~--------~~g~i~vwd~~~~~~~~~~~~~   80 (424)
                      .|+.+.+||+.+++....+..+  ..+...+..+.  |+|||++|+.+..        .++.+.+||+.+++......+.
T Consensus        34 ~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~--~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~~~~~l~~~~  111 (470)
T d2bgra1          34 QENNILVFNAEYGNSSVFLENSTFDEFGHSINDYS--ISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLITEERIP  111 (470)
T ss_dssp             SSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEE--ECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCCC
T ss_pred             cCCcEEEEECCCCCEEEEEchhhhhhccCccceeE--ECCCCCEEEEEECCcceeeeccCceEEEEECCCCcccccccCC
Confidence            4688999999999987666543  33455678888  9999999998742        1278899999999887777788


Q ss_pred             CCeeEEEECCCCCEEEEecCCCcEEEEEccCcceeeeecc------------------ccCCeEEEEEccCCcEEEEeeC
Q 014475           81 EPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHA------------------HYRAVTCLVFSEDGSFLISGSE  142 (424)
Q Consensus        81 ~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~------------------~~~~i~~~~~~~~~~~l~s~~~  142 (424)
                      ..+..+.|||||+.+|.. .++.+++|+..+++..+....                  ..+....+.|+|||++|+....
T Consensus       112 ~~~~~~~~SPDG~~ia~~-~~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~wSPDGk~ia~~~~  190 (470)
T d2bgra1         112 NNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQF  190 (470)
T ss_dssp             TTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEE
T ss_pred             ccccccccccCcceeeEe-ecccceEEECCCCceeeeeeccCCCcccccccceeeeeeecCCccccEECCCCCccceeEe
Confidence            899999999999999986 567899999988876554322                  1233466889999999998876


Q ss_pred             CCc-EEEEeCCcccchh----cc---------cccccceEE--e--------------------ecCCcCceeEEEEEEc
Q 014475          143 DGC-VRIWSLLTVFEEC----ES---------QRASHLYLH--S--------------------FTGHTLRITDIVIGYG  186 (424)
Q Consensus       143 dg~-i~iwd~~~~~~~~----~~---------~~~~~~~~~--~--------------------~~~~~~~i~~~~~~~~  186 (424)
                      |.. +..|.+.......    ..         .......+.  .                    .......+..+.|.++
T Consensus       191 d~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~  270 (470)
T d2bgra1         191 NDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQ  270 (470)
T ss_dssp             ECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEEGGGCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEET
T ss_pred             cCCcCceEEEEeeccCCCCCCeeeeeccccccccCCcceEEEEECCCcceeeeccccccCCccccCCCCceEEEEEEcCC
Confidence            533 4444332100000    00         000000000  0                    0112233456778777


Q ss_pred             CceeEEEE-EeCCC---cEEEE--ecCCCceeeeee-------cCc-----ceeEEEECCC--CCEEEEEeCCCcEEEEE
Q 014475          187 GVSATIVS-ASEDR---TCKVW--SLLKGRLLRNIV-------FPS-----VIDAIALDPA--EHVFYAGSRDGSIYIAA  246 (424)
Q Consensus       187 ~~~~~l~~-~~~d~---~v~iw--d~~~~~~~~~~~-------~~~-----~i~~~~~~~~--~~~l~~~~~dg~i~i~d  246 (424)
                      +  ..++. ....+   .+.++  |..+++......       ...     ......+.++  +.+++.+..+|..++|.
T Consensus       271 ~--~~~~~~~~r~~~~~~~~~~~~d~~tg~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~s~~dg~~~ly~  348 (470)
T d2bgra1         271 E--RISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICY  348 (470)
T ss_dssp             T--EEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEE
T ss_pred             C--ceeEEEeeccCCceEEEEEEecCCCCcEEEEEEEeeeeeeccceeecccCCCceeeecCCCcEEEEeccCcCceeEE
Confidence            6  44443 22222   23344  444444332211       011     1112233443  34456677888766665


Q ss_pred             cCCCCCCCCCcCceeeeeecccCcCeEEEEe-cCCCEEEEeCCCC----c--EEEEeCCCCcEEEEE----eccCCCeeE
Q 014475          247 LNAESPSTSSYGMHIIGSLSDHSKAVTCLAY-STGDLLISGSEDG----M--VRVWDPITHNIVRMF----RLAKGPVNN  315 (424)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~l~t~~~dg----~--i~iwd~~~~~~~~~~----~~~~~~v~~  315 (424)
                      .....        .....+..+...|..+.. +++..++++..++    .  |.-.++..+.....+    ..|...+.+
T Consensus       349 ~~~~g--------~~~~~lt~g~~~v~~~~~~d~~~iyf~a~~~~~~p~~~~ly~v~~~g~~~~~~lt~~~~~~~~~~~s  420 (470)
T d2bgra1         349 FQIDK--------KDCTFITKGTWEVIGIEALTSDYLYYISNEYKGMPGGRNLYKIQLSDYTKVTCLSCELNPERCQYYS  420 (470)
T ss_dssp             EETTC--------SCCEESCCSSSCEEEEEEECSSEEEEEESCGGGCTTCBEEEEEETTCTTCEEESSTTTSTTTBCBEE
T ss_pred             EeccC--------CceeeeccCCeeEEEEEEECCCEEEEEEecCCCCcceEEEEEEECCCCCceeEecccccCCCCCEEE
Confidence            44322        223334344556666533 3344445554332    1  333344444444443    357778999


Q ss_pred             EEEEecCceee---eccCCCceeeccCCCCCCC
Q 014475          316 ILVVRRPLYLN---LGSFSNPHTSSRRHGSQLP  345 (424)
Q Consensus       316 l~~s~~~~~l~---~~~~d~~i~iw~~~~~~~~  345 (424)
                      ++|||||++++   ++...-.+.+|+..+++..
T Consensus       421 ~~fSpdgky~~~~~s~~~~P~~~l~~~~~g~~v  453 (470)
T d2bgra1         421 VSFSKEAKYYQLRCSGPGLPLYTLHSSVNDKGL  453 (470)
T ss_dssp             EEECTTSSEEEEEECSBSSCEEEEEETTTTEEE
T ss_pred             EEECCCCCEEEEEecCCCCCeEEEEECCCCCEE
Confidence            99999999987   4555556888887766543

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.75  E-value=2e-18  Score=153.04  Aligned_cols=333  Identities=9%  Similarity=-0.031  Sum_probs=215.1

Q ss_pred             EEEeecCCCCCceEEEeCCCCceEEEeeCCCC---------------------------CCCceEEecceeecCCCcccc
Q 014475            3 LLIASSSVADTGIGCWDLESGAEQLRYKSCAS---------------------------PPHGLACVGQRFLASSQLREQ   55 (424)
Q Consensus         3 ~~lat~~~~dg~i~vwd~~~~~~~~~~~~~~~---------------------------~~~~v~~~~~~~~~~~~~l~~   55 (424)
                      ..++|++ .+|+|+||++.+++.++++.....                           |........  ..|||+++++
T Consensus        12 y~f~Sgg-~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~--gtpDGr~lfV   88 (441)
T d1qnia2          12 YGFWSGG-HQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTD--GRYDGKYLFI   88 (441)
T ss_dssp             EEEEECB-TTCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEET--TEEEEEEEEE
T ss_pred             EEEEeCC-CCCcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceec--ccCCCCEEEE
Confidence            3467888 999999999999999988754210                           122345555  7899999988


Q ss_pred             CCCCceeEEEEECCCCceeee--ecCCCCeeEEEECCCCC--EEEEecCCC-----------------cEEEEEccCcce
Q 014475           56 PSASSGSILYWSWSKPQVEVK--SLPAEPIKPIAANSHGT--YIAGGGQSG-----------------DIYMWEVASGRL  114 (424)
Q Consensus        56 ~~~~~g~i~vwd~~~~~~~~~--~~~~~~v~~~~~s~~~~--~l~~~~~dg-----------------~v~iwd~~~~~~  114 (424)
                      ....++.|.++|+++.+....  ......+..++|+|+|+  |++..+.+.                 .+..+|..+.+.
T Consensus        89 ~d~~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v  168 (441)
T d1qnia2          89 NDKANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDV  168 (441)
T ss_dssp             EETTTTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCSE
T ss_pred             EcCCCCEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCcccee
Confidence            876669999999998876543  34577899999999998  555444332                 235578888777


Q ss_pred             eeeeccccCCeEEEEEccCCcEEEEeeCCCc-EEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEE
Q 014475          115 LKKWHAHYRAVTCLVFSEDGSFLISGSEDGC-VRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIV  193 (424)
Q Consensus       115 ~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~  193 (424)
                      ..++... +....+.|+|+|+++++++.+.. +..++..+.        .....+....    .-..+.+.+++  +++.
T Consensus       169 ~~qI~v~-~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~--------~~~d~i~v~n----~p~~~~~~~dG--k~~~  233 (441)
T d1qnia2         169 AWQVIVD-GNLDNTDADYTGKYATSTCYNSERAVDLAGTMR--------NDRDWVVVFN----VERIAAAVKAG--NFKT  233 (441)
T ss_dssp             EEEEEES-SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTC--------SSBCEEEEEE----HHHHHHHHHTT--CCBC
T ss_pred             eEEEecC-CCccceEECCCCCEEEEEecCCCceEEEeccCc--------ceEEEEEeCC----ccceEEEecCC--CEEE
Confidence            7666543 45788999999999988876532 222222110        0111111111    11122345666  4443


Q ss_pred             EEeCCCcEEEEecCCCceeeeeecCcceeEEEECCCCCEEEE-EeCCCcEEEEEcCCCCCCCCC--cCceeeeeecccCc
Q 014475          194 SASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYA-GSRDGSIYIAALNAESPSTSS--YGMHIIGSLSDHSK  270 (424)
Q Consensus       194 ~~~~d~~v~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~-~~~dg~i~i~d~~~~~~~~~~--~~~~~~~~~~~~~~  270 (424)
                       .+.++.+.+++....+.+..+..+.....+.++|||+++++ +..++++.+||+.........  .....+.......-
T Consensus       234 -v~~~~v~vvd~~~~~~v~~~IPvgksPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~~~~~gl  312 (441)
T d1qnia2         234 -IGDSKVPVVDGRGESEFTRYIPVPKNPHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVAEPELGL  312 (441)
T ss_dssp             -CTTCCCCEEECSSSCSSEEEECCBSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEEECCBCCS
T ss_pred             -eCCCCcEEEEcccCCceEEEEeCCCCccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcceEEEeeccccc
Confidence             34567888888777778888887777889999999998765 567899999998763210000  00011111111122


Q ss_pred             CeEEEEecC-CCEEEEeCCCCcEEEEeCCC----------CcEEEEE-----eccCCCeeEEEEEecCceeeeccCCCce
Q 014475          271 AVTCLAYST-GDLLISGSEDGMVRVWDPIT----------HNIVRMF-----RLAKGPVNNILVVRRPLYLNLGSFSNPH  334 (424)
Q Consensus       271 ~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~----------~~~~~~~-----~~~~~~v~~l~~s~~~~~l~~~~~d~~i  334 (424)
                      .....+|.+ +..+.+...|..|..|++..          ...+..+     .+|...+.+.+++|||+||++++.-..=
T Consensus       313 gplh~~fd~~g~~yts~~~ds~v~kw~~~~~~~~~~~~~~~~v~~~~~v~y~~GH~~~~~~~t~~pdGk~l~s~~k~s~d  392 (441)
T d1qnia2         313 GPLHTTFDGRGNAYTTLFIDSQVCKWNIADAIKHYNGDRVNYIRQKLDVQYQPGHNHASLTESRDADGKWLVVLSKFSKD  392 (441)
T ss_dssp             CEEEEEECSSSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCCCEEEEEESCCGG
T ss_pred             CcccceecCCceEEEcccccceEEEeccchhhhhhccCCCceeEeccccccCCCCCccccccccCCCCcEEEecCccccc
Confidence            344567888 88888889999999999742          1234444     4677777788899999999999654444


Q ss_pred             eeccCCCCCCCCCccccccccc
Q 014475          335 TSSRRHGSQLPPPLDKYVTSAD  356 (424)
Q Consensus       335 ~iw~~~~~~~~~~~~~~~~~~~  356 (424)
                      |++.+.  .+.+...+++.-..
T Consensus       393 r~~~~g--~~~~~~~q~~~i~~  412 (441)
T d1qnia2         393 RFLPVG--PLHPENDQLIDISG  412 (441)
T ss_dssp             GSCCCS--SSCCEEEEEEECSS
T ss_pred             cCcCCC--CCCCccceeEEecC
Confidence            444433  23333344444433

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.71  E-value=1.3e-15  Score=135.62  Aligned_cols=272  Identities=7%  Similarity=-0.085  Sum_probs=176.2

Q ss_pred             CCCc--eEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCC---------CCceeEEEEECCCCceeeeec-
Q 014475           11 ADTG--IGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPS---------ASSGSILYWSWSKPQVEVKSL-   78 (424)
Q Consensus        11 ~dg~--i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~---------~~~g~i~vwd~~~~~~~~~~~-   78 (424)
                      .+|.  |.+||..+++.+.++..+..+     .++  |+|||+.+++++         ..++.|.+||..+.+...... 
T Consensus        42 ~~g~~~~~~~d~~~~~~~~~~~~~~~~-----~~a--~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~  114 (368)
T d1mdah_          42 FAGTTENWVSCAGCGVTLGHSLGAFLS-----LAV--AGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIEL  114 (368)
T ss_dssp             TCSSEEEEEEETTTTEEEEEEEECTTC-----EEE--ECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEE
T ss_pred             CCCcceEEEEeCCCCcEEEEEeCCCCC-----cce--ECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecC
Confidence            4555  666699999999888765432     244  999999888653         234889999999887654321 


Q ss_pred             C-------CCCeeEEEECCCCCEEEEec-CCCcEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEe
Q 014475           79 P-------AEPIKPIAANSHGTYIAGGG-QSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWS  150 (424)
Q Consensus        79 ~-------~~~v~~~~~s~~~~~l~~~~-~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd  150 (424)
                      +       ......++|+|||++++++. .++.+.+||+.+++....+..+.....   +......++..+.||.+.+++
T Consensus       115 p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~~~~---~~~~~~~~v~~~~Dg~~~~~~  191 (368)
T d1mdah_         115 PDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHI---HPGAAATHYLGSCPASLAASD  191 (368)
T ss_dssp             TTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCCCC---EEEETTEEECCCCTTSCEEEE
T ss_pred             CccceecccCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcEeEEeeccCcceE---ccCCCceEEEEcCCCCEEEEE
Confidence            1       22345799999999998775 578999999999998888765544321   112344667777888888888


Q ss_pred             CCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeee-------------c
Q 014475          151 LLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-------------F  217 (424)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~-------------~  217 (424)
                      +...........     ......+...+....+.+++  ..+.+.  ++.+.+++...+.......             .
T Consensus       192 ~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~g--~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (368)
T d1mdah_         192 LAAAPAAAGIVG-----AQCTGAQNCSSQAAQANYPG--MLVWAV--ASSILQGDIPAAGATMKAAIDGNESGRKADNFR  262 (368)
T ss_dssp             CCSSCCCCEECC-----CCSCTTSCBCSCCEEETTTT--EEEECB--SSCCEEEECCSSCCEEECCCCSSCTHHHHTTEE
T ss_pred             ecCCceeeeeee-----cccccccccceeecccccCc--EEEEec--CCCEEEEeecCCceEEEeecccccceeeeeeec
Confidence            765322111000     01122333344445555544  444333  3456666655444332211             1


Q ss_pred             CcceeEEEECCCCCEEEEEeCC---------CcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CC--EEEE
Q 014475          218 PSVIDAIALDPAEHVFYAGSRD---------GSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GD--LLIS  285 (424)
Q Consensus       218 ~~~i~~~~~~~~~~~l~~~~~d---------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~--~l~t  285 (424)
                      +.....++++|++..+++...+         ..|.+||..+++         .+..+. +...+.+++|+| ++  ++++
T Consensus       263 ~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~---------~~~~~~-~~~~~~~~a~spDG~~~ly~s  332 (368)
T d1mdah_         263 SAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQ---------TSGPIS-NGHDSDAIIAAQDGASDNYAN  332 (368)
T ss_dssp             ECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCC---------EEECCE-EEEEECEEEECCSSSCEEEEE
T ss_pred             CCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEECCCCc---------EeEEec-CCCceeEEEECCCCCEEEEEE
Confidence            2234567889988887765433         258899998873         344443 346788999999 65  4567


Q ss_pred             eCCCCcEEEEeCCCCcEEEEEeccCC
Q 014475          286 GSEDGMVRVWDPITHNIVRMFRLAKG  311 (424)
Q Consensus       286 ~~~dg~i~iwd~~~~~~~~~~~~~~~  311 (424)
                      +..|+.|++||..+++.+.++.....
T Consensus       333 ~~~~~~v~v~D~~tgk~~~~i~~g~~  358 (368)
T d1mdah_         333 SAGTEVLDIYDAASDQDQSSVELDKG  358 (368)
T ss_dssp             ETTTTEEEEEESSSCEEEEECCCCSC
T ss_pred             eCCCCeEEEEECCCCCEEEEEECCCC
Confidence            78899999999999999999986544

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.66  E-value=3e-15  Score=133.13  Aligned_cols=279  Identities=10%  Similarity=-0.097  Sum_probs=174.6

Q ss_pred             eecCCCc--ccc-CCCC-ceeEEEEECCCCceeeeecCCCCeeEEEECCCCCEEEEec----------CCCcEEEEEccC
Q 014475           46 FLASSQL--REQ-PSAS-SGSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGG----------QSGDIYMWEVAS  111 (424)
Q Consensus        46 ~~~~~~~--l~~-~~~~-~g~i~vwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~----------~dg~v~iwd~~~  111 (424)
                      ..++++.  ++. ...+ +..+.+||..+++....... .....++|+|||+.|++.+          .|+.|.+||..+
T Consensus        27 ~~~~~~~~~v~~~~~~~g~~~~~~~d~~~~~~~~~~~~-~~~~~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t  105 (368)
T d1mdah_          27 PGAISRRSHITLPAYFAGTTENWVSCAGCGVTLGHSLG-AFLSLAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVT  105 (368)
T ss_dssp             CCCCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEE-CTTCEEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTT
T ss_pred             cCCCCcceeEEeeccCCCcceEEEEeCCCCcEEEEEeC-CCCCcceECCCCCEEEEEcccCccccccccCCeEEEEECCC
Confidence            5566664  332 2222 25577779888876544322 1223689999999988753          467799999999


Q ss_pred             cceeeeeccccC-------CeEEEEEccCCcEEEEee-CCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEE
Q 014475          112 GRLLKKWHAHYR-------AVTCLVFSEDGSFLISGS-EDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVI  183 (424)
Q Consensus       112 ~~~~~~~~~~~~-------~i~~~~~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  183 (424)
                      ++.+..+..+..       ....++|+|||++++++. .++.+.+||+.+.           ........+....    +
T Consensus       106 ~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~-----------~~~~~~~~~~~~~----~  170 (368)
T d1mdah_         106 FLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGA-----------SDDQLTKSASCFH----I  170 (368)
T ss_dssp             CCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTT-----------EEEEEEECSSCCC----C
T ss_pred             CcEeeeecCCccceecccCCccceEECCCCCEEEEEeCCCCeEEEEECCCC-----------cEeEEeeccCcce----E
Confidence            998887754322       234689999999998776 5789999999652           2333333333221    2


Q ss_pred             EEcCceeEEEEEeCCCcEEEEecCCCceeeeee-------cCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCC
Q 014475          184 GYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-------FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSS  256 (424)
Q Consensus       184 ~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~-------~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~  256 (424)
                      .+.+. ..++..+.||.+..+++..........       +...+....+.+++..+..  ..+.+++++..........
T Consensus       171 ~~~~~-~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--~~~~v~~~~~~~~~~~~~~  247 (368)
T d1mdah_         171 HPGAA-ATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWA--VASSILQGDIPAAGATMKA  247 (368)
T ss_dssp             EEEET-TEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEEC--BSSCCEEEECCSSCCEEEC
T ss_pred             ccCCC-ceEEEEcCCCCEEEEEecCCceeeeeeecccccccccceeecccccCcEEEEe--cCCCEEEEeecCCceEEEe
Confidence            22322 567778889999999887654433221       2234456677777765543  3566777777654321100


Q ss_pred             cC-ceeeee--ecccCcCeEEEEecC-CCEEEEeCC---------CCcEEEEeCCCCcEEEEEeccCCCeeEEEEEecCc
Q 014475          257 YG-MHIIGS--LSDHSKAVTCLAYST-GDLLISGSE---------DGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPL  323 (424)
Q Consensus       257 ~~-~~~~~~--~~~~~~~i~~~~~~~-~~~l~t~~~---------dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~  323 (424)
                      .. ......  ..........+++++ +..++....         ...|.+||..+++.+.++.. ...+..++|+|||+
T Consensus       248 ~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~-~~~~~~~a~spDG~  326 (368)
T d1mdah_         248 AIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISN-GHDSDAIIAAQDGA  326 (368)
T ss_dssp             CCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEE-EEEECEEEECCSSS
T ss_pred             ecccccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEECCCCcEeEEecC-CCceeEEEECCCCC
Confidence            00 000000  000112223466777 555544321         23599999999999988874 46789999999997


Q ss_pred             e--eeeccCCCceeeccCCCCCC
Q 014475          324 Y--LNLGSFSNPHTSSRRHGSQL  344 (424)
Q Consensus       324 ~--l~~~~~d~~i~iw~~~~~~~  344 (424)
                      .  ++++..|+.|++||..+++.
T Consensus       327 ~~ly~s~~~~~~v~v~D~~tgk~  349 (368)
T d1mdah_         327 SDNYANSAGTEVLDIYDAASDQD  349 (368)
T ss_dssp             CEEEEEETTTTEEEEEESSSCEE
T ss_pred             EEEEEEeCCCCeEEEEECCCCCE
Confidence            3  46777899999999988764

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.41  E-value=4.1e-11  Score=109.66  Aligned_cols=281  Identities=9%  Similarity=-0.028  Sum_probs=155.0

Q ss_pred             CCCceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCceeeeec------------
Q 014475           11 ADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSL------------   78 (424)
Q Consensus        11 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~~~------------   78 (424)
                      .++.+.|||+++++.. .+   ..+...+..+.  |+|||+.+|....  +.+.+|+..+++......            
T Consensus        90 ~~~~~~l~d~~~~~~~-~l---~~~~~~~~~~~--~SPDG~~ia~~~~--~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~  161 (470)
T d2bgra1          90 YTASYDIYDLNKRQLI-TE---ERIPNNTQWVT--WSPVGHKLAYVWN--NDIYVKIEPNLPSYRITWTGKEDIIYNGIT  161 (470)
T ss_dssp             EEEEEEEEETTTTEEC-CS---SCCCTTEEEEE--ECSSTTCEEEEET--TEEEEESSTTSCCEECCSCCBTTTEEESBC
T ss_pred             cCceEEEEECCCCccc-cc---ccCCccccccc--cccCcceeeEeec--ccceEEECCCCceeeeeeccCCCccccccc
Confidence            4577899999988643 33   34556677778  9999999999654  789999988776443221            


Q ss_pred             -------CCCCeeEEEECCCCCEEEEecCCCc-EE-----------------------------------EEEccCccee
Q 014475           79 -------PAEPIKPIAANSHGTYIAGGGQSGD-IY-----------------------------------MWEVASGRLL  115 (424)
Q Consensus        79 -------~~~~v~~~~~s~~~~~l~~~~~dg~-v~-----------------------------------iwd~~~~~~~  115 (424)
                             ..+....+.|||||++|+....|.. +.                                   +|++..+...
T Consensus       162 d~~~~~~~~~~~~~~~wSPDGk~ia~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~v~~~~~~~~~  241 (470)
T d2bgra1         162 DWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSV  241 (470)
T ss_dssp             CHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEEGGGCCSS
T ss_pred             ceeeeeeecCCccccEECCCCCccceeEecCCcCceEEEEeeccCCCCCCeeeeeccccccccCCcceEEEEECCCccee
Confidence                   1234567889999999998755432 33                                   2333222211


Q ss_pred             eeec-----------cccCCeEEEEEccCCcEEEEee-CCC---cEEEE--eCCcccchhccccccc--ceEEeecCCcC
Q 014475          116 KKWH-----------AHYRAVTCLVFSEDGSFLISGS-EDG---CVRIW--SLLTVFEECESQRASH--LYLHSFTGHTL  176 (424)
Q Consensus       116 ~~~~-----------~~~~~i~~~~~~~~~~~l~s~~-~dg---~i~iw--d~~~~~~~~~~~~~~~--~~~~~~~~~~~  176 (424)
                      ....           .....+..+.|.++++.++... ..+   .+.++  |..++...........  ........+..
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~r~~~~~~~~~~~~d~~tg~~~~~~~~~~~~~~~~~~i~~~~~  321 (470)
T d2bgra1         242 TNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRP  321 (470)
T ss_dssp             SCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSC
T ss_pred             eeccccccCCccccCCCCceEEEEEEcCCCceeEEEeeccCCceEEEEEEecCCCCcEEEEEEEeeeeeeccceeecccC
Confidence            1110           1122356778888777655432 222   23344  3333221110000000  00000111221


Q ss_pred             ceeEEEEEEcCceeEEEEEeCCCcEEEE--ecCCCceeeeeecCcceeEEEECCCCCEE-EEEeCCC----cEEEEE--c
Q 014475          177 RITDIVIGYGGVSATIVSASEDRTCKVW--SLLKGRLLRNIVFPSVIDAIALDPAEHVF-YAGSRDG----SIYIAA--L  247 (424)
Q Consensus       177 ~i~~~~~~~~~~~~~l~~~~~d~~v~iw--d~~~~~~~~~~~~~~~i~~~~~~~~~~~l-~~~~~dg----~i~i~d--~  247 (424)
                      .  ...+.+++.+..++.+..+|..+||  +...+...........+..+ ++++++.+ ++++.++    .-++|.  +
T Consensus       322 ~--~~~~~~~~~~~~~~~s~~dg~~~ly~~~~~g~~~~~lt~g~~~v~~~-~~~d~~~iyf~a~~~~~~p~~~~ly~v~~  398 (470)
T d2bgra1         322 S--EPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCTFITKGTWEVIGI-EALTSDYLYYISNEYKGMPGGRNLYKIQL  398 (470)
T ss_dssp             C--CCEECTTSSEEEEEEECTTSCEEEEEEETTCSCCEESCCSSSCEEEE-EEECSSEEEEEESCGGGCTTCBEEEEEET
T ss_pred             C--CceeeecCCCcEEEEeccCcCceeEEEeccCCceeeeccCCeeEEEE-EEECCCEEEEEEecCCCCcceEEEEEEEC
Confidence            1  2234455544566777788776655  55444443333355556665 33334433 4444332    224444  4


Q ss_pred             CCCCCCCCCcCceee-eeecccCcCeEEEEecC-CCEEE---EeCCCCcEEEEeCCCCcEEEEEec
Q 014475          248 NAESPSTSSYGMHII-GSLSDHSKAVTCLAYST-GDLLI---SGSEDGMVRVWDPITHNIVRMFRL  308 (424)
Q Consensus       248 ~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~-~~~l~---t~~~dg~i~iwd~~~~~~~~~~~~  308 (424)
                      .....      .+++ ..+..|...+..++||| +++++   ++...-.+.+|+..+++.++.+..
T Consensus       399 ~g~~~------~~~lt~~~~~~~~~~~s~~fSpdgky~~~~~s~~~~P~~~l~~~~~g~~v~~le~  458 (470)
T d2bgra1         399 SDYTK------VTCLSCELNPERCQYYSVSFSKEAKYYQLRCSGPGLPLYTLHSSVNDKGLRVLED  458 (470)
T ss_dssp             TCTTC------EEESSTTTSTTTBCBEEEEECTTSSEEEEEECSBSSCEEEEEETTTTEEEEEEEC
T ss_pred             CCCCc------eeEecccccCCCCCEEEEEECCCCCEEEEEecCCCCCeEEEEECCCCCEEEEEec
Confidence            43221      1222 23456888999999999 88877   333455699999999999998864

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.41  E-value=1.8e-11  Score=108.15  Aligned_cols=227  Identities=10%  Similarity=0.008  Sum_probs=147.2

Q ss_pred             EEeecCCCCCceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCCCc------------------eeEEE
Q 014475            4 LIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASS------------------GSILY   65 (424)
Q Consensus         4 ~lat~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~------------------g~i~v   65 (424)
                      ++++.. .+++|.++|+++++..+.+.-..  ..+...++  |+|+|+.+.+....+                  ..+..
T Consensus        86 lfV~d~-~~~rVavIDl~t~k~~~ii~iP~--g~gphgi~--~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~  160 (441)
T d1qnia2          86 LFINDK-ANTRVARIRLDIMKTDKITHIPN--VQAIHGLR--LQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTA  160 (441)
T ss_dssp             EEEEET-TTTEEEEEETTTTEEEEEEECTT--CCCEEEEE--ECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEE
T ss_pred             EEEEcC-CCCEEEEEECCCCcEeeEEecCC--CCCccceE--EeccCCEEEEEeccCCcccccCcccccccccccceEEe
Confidence            345555 78999999999999888765322  24566666  999999654332111                  23456


Q ss_pred             EECCCCceeeeecCCCCeeEEEECCCCCEEEEecCC-----------------------------------------CcE
Q 014475           66 WSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQS-----------------------------------------GDI  104 (424)
Q Consensus        66 wd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-----------------------------------------g~v  104 (424)
                      +|..+.+........+....++|+|+|+++++++.+                                         +.+
T Consensus       161 iD~~t~~v~~qI~v~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v~~~~v~  240 (441)
T d1qnia2         161 IDAETMDVAWQVIVDGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIGDSKVP  240 (441)
T ss_dssp             EETTTCSEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCCTTCCCC
T ss_pred             ecCccceeeEEEecCCCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEEEeCCCCcE
Confidence            888887776665556778999999999998877543                                         334


Q ss_pred             EEEEccCcceeeeeccccCCeEEEEEccCCcEEE-EeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEE
Q 014475          105 YMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLI-SGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVI  183 (424)
Q Consensus       105 ~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  183 (424)
                      .+++....+.+..+..... ...+.++|||++++ ++..+++|.+||+++..............+.......-......|
T Consensus       241 vvd~~~~~~v~~~IPvgks-PhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~~~~~glgplh~~f  319 (441)
T d1qnia2         241 VVDGRGESEFTRYIPVPKN-PHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVAEPELGLGPLHTTF  319 (441)
T ss_dssp             EEECSSSCSSEEEECCBSS-CCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEEECCBCCSCEEEEEE
T ss_pred             EEEcccCCceEEEEeCCCC-ccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcceEEEeecccccCccccee
Confidence            4444444455566655444 57899999999875 567799999999977543322221111111111111122233467


Q ss_pred             EEcCceeEEEEEeCCCcEEEEecCCC----------ceeeee------ecCcceeEEEECCCCCEEEEEeC
Q 014475          184 GYGGVSATIVSASEDRTCKVWSLLKG----------RLLRNI------VFPSVIDAIALDPAEHVFYAGSR  238 (424)
Q Consensus       184 ~~~~~~~~l~~~~~d~~v~iwd~~~~----------~~~~~~------~~~~~i~~~~~~~~~~~l~~~~~  238 (424)
                      .+++  +.+.+...|..|..|++...          ..+..+      .|...+.+.+++|+|++|++++.
T Consensus       320 d~~g--~~yts~~~ds~v~kw~~~~~~~~~~~~~~~~v~~~~~v~y~~GH~~~~~~~t~~pdGk~l~s~~k  388 (441)
T d1qnia2         320 DGRG--NAYTTLFIDSQVCKWNIADAIKHYNGDRVNYIRQKLDVQYQPGHNHASLTESRDADGKWLVVLSK  388 (441)
T ss_dssp             CSSS--EEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCCCEEEEEES
T ss_pred             cCCc--eEEEcccccceEEEeccchhhhhhccCCCceeEeccccccCCCCCccccccccCCCCcEEEecCc
Confidence            6666  78888889999999997421          122222      24455666678999999999953

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.33  E-value=3.2e-09  Score=88.90  Aligned_cols=238  Identities=13%  Similarity=0.047  Sum_probs=150.0

Q ss_pred             eeEEEEECCCCceeeeecCCCCeeEEEECCCCCEEEEecCC---CcEEEEEccCcceeeeeccccCCeEEEEEccCCcEE
Q 014475           61 GSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQS---GDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFL  137 (424)
Q Consensus        61 g~i~vwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---g~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l  137 (424)
                      -.|.|.|.+.............+..-+|||||+.||.....   ..+.+.+...+.. ..+..+........|+|+++.+
T Consensus        19 ~~l~i~d~dG~~~~~l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~spdg~~i   97 (269)
T d2hqsa1          19 YELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAV-RQVASFPRHNGAPAFSPDGSKL   97 (269)
T ss_dssp             EEEEEEETTSCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EEEECCSSCEEEEEECTTSSEE
T ss_pred             EEEEEEcCCCCCcEEEecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCce-eEEeeeecccccceecCCCCee
Confidence            36888898887777666677889999999999999876443   2466667655554 3444577888999999999988


Q ss_pred             EEeeC-CCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCc--EEEEecCCCceeee
Q 014475          138 ISGSE-DGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRT--CKVWSLLKGRLLRN  214 (424)
Q Consensus       138 ~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~--v~iwd~~~~~~~~~  214 (424)
                      +.... ++...++....         .... ...............+++.+. ..+++...++.  +...++..+.....
T Consensus        98 ~~~~~~~~~~~~~~~~~---------~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~i~~~~~~~~~~~~~  166 (269)
T d2hqsa1          98 AFALSKTGSLNLYVMDL---------ASGQ-IRQVTDGRSNNTEPTWFPDSQ-NLAFTSDQAGRPQVYKVNINGGAPQRI  166 (269)
T ss_dssp             EEEECTTSSCEEEEEET---------TTCC-EEECCCCSSCEEEEEECTTSS-EEEEEECTTSSCEEEEEETTSSCCEEC
T ss_pred             eEeeecCCccceeeccc---------cccc-ceeeeeccccccccccccccc-cceecccccCCceEeeeecccccceee
Confidence            86554 33333332211         1111 112222333333444555553 45555555554  55556666655444


Q ss_pred             eecCcceeEEEECCCCCEEEEEeCCC-cEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCC---C
Q 014475          215 IVFPSVIDAIALDPAEHVFYAGSRDG-SIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSE---D  289 (424)
Q Consensus       215 ~~~~~~i~~~~~~~~~~~l~~~~~dg-~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~---d  289 (424)
                      ...........|+|+++.++..+.++ ...+|......        ... ....+........|+| |+.|+..+.   .
T Consensus       167 ~~~~~~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~--------~~~-~~~~~~~~~~~p~~SPDG~~i~f~s~~~~~  237 (269)
T d2hqsa1         167 TWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLAT--------GGV-QVLSSTFLDETPSLAPNGTMVIYSSSQGMG  237 (269)
T ss_dssp             CCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTT--------CCE-EECCCSSSCEEEEECTTSSEEEEEEEETTE
T ss_pred             ecccccccccccccccceeEEEeecCCceeeeEeeccc--------ccc-eEeecCccccceEECCCCCEEEEEEcCCCC
Confidence            44667778889999999888766544 44444443332        111 2223455667788999 888775443   4


Q ss_pred             CcEEEEeCCCCcEEEEEeccCCCeeEEEEEe
Q 014475          290 GMVRVWDPITHNIVRMFRLAKGPVNNILVVR  320 (424)
Q Consensus       290 g~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~  320 (424)
                      ..|.++++..+.. ..+....+.+...+|+|
T Consensus       238 ~~l~~~~~dg~~~-~~lt~~~g~~~~p~WSP  267 (269)
T d2hqsa1         238 SVLNLVSTDGRFK-ARLPATDGQVKFPAWSP  267 (269)
T ss_dssp             EEEEEEETTSCCE-EECCCSSSEEEEEEECC
T ss_pred             cEEEEEECCCCCE-EEEeCCCCcEEeEEeCC
Confidence            5689999886654 55666677888899998

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.31  E-value=7.5e-10  Score=94.63  Aligned_cols=234  Identities=12%  Similarity=0.039  Sum_probs=154.2

Q ss_pred             ceEEecceeecCCCccccCCCCceeEEEEECCCCceeeeecCCCCeeEEEECCCCCEEEEecCCCcEEEEEccCccee-e
Q 014475           38 GLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLL-K  116 (424)
Q Consensus        38 ~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~-~  116 (424)
                      .+..++  +.|||+++++...+ ++|..|+.+.. ..........+.+++|+|+|+++++...++.+..++....... .
T Consensus        29 ~~e~iA--v~pdG~l~vt~~~~-~~I~~i~p~g~-~~~~~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~  104 (302)
T d2p4oa1          29 FLENLA--SAPDGTIFVTNHEV-GEIVSITPDGN-QQIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVE  104 (302)
T ss_dssp             CEEEEE--ECTTSCEEEEETTT-TEEEEECTTCC-EEEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEE
T ss_pred             CcCCEE--ECCCCCEEEEeCCC-CEEEEEeCCCC-EEEEEcCCCCcceEEEcCCCCeEEEecCCceEEEEEeccccccee
Confidence            356677  99999988887776 99999986544 4444556678999999999999998888888888887544221 1


Q ss_pred             ee--ccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEE
Q 014475          117 KW--HAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVS  194 (424)
Q Consensus       117 ~~--~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~  194 (424)
                      .+  .......+.+.+.++++++++.+.++.+..++................ .............+.+.  +. ..+++
T Consensus       105 ~~~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ngi~~~--~~-~l~~~  180 (302)
T d2p4oa1         105 TLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLA-RSNSESVFPAANGLKRF--GN-FLYVS  180 (302)
T ss_dssp             EEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGS-CSSTTCCSCSEEEEEEE--TT-EEEEE
T ss_pred             eccccCCccccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCccc-eeeccCccccccccccc--CC-ceeee
Confidence            11  124466889999999999998888888888888653221110000000 00011122234455554  32 67777


Q ss_pred             EeCCCcEEEEecCCCceeee---eecCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcC
Q 014475          195 ASEDRTCKVWSLLKGRLLRN---IVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKA  271 (424)
Q Consensus       195 ~~~d~~v~iwd~~~~~~~~~---~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~  271 (424)
                      .+..+.|..++.........   .........++++++|+++++...++.|..++.....        ..+......-..
T Consensus       181 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG~l~va~~~~~~V~~i~p~G~~--------~~~~~~~~~~~~  252 (302)
T d2p4oa1         181 NTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPDRST--------TIIAQAEQGVIG  252 (302)
T ss_dssp             ETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBTTCCEEEECTTCCE--------EEEECGGGTCTT
T ss_pred             cCCCCeEEeccccccccccccccccCCCCCcceEECCCCCEEEEEcCCCcEEEECCCCCE--------EEEEecCCCCCC
Confidence            78888999888775443322   2234556789999999988888889999999776542        233344444566


Q ss_pred             eEEEEec---C-CCEEEEeC
Q 014475          272 VTCLAYS---T-GDLLISGS  287 (424)
Q Consensus       272 i~~~~~~---~-~~~l~t~~  287 (424)
                      .++++|.   + ++.|+.++
T Consensus       253 pt~vafg~~~~D~~~Lyvtt  272 (302)
T d2p4oa1         253 STAVAFGQTEGDCTAIYVVT  272 (302)
T ss_dssp             EEEEEECCSTTTTTEEEEEE
T ss_pred             ceEEEEcCCCCCCCEEEEEC
Confidence            8899994   4 45554443

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.28  E-value=2.7e-09  Score=91.11  Aligned_cols=230  Identities=9%  Similarity=0.041  Sum_probs=153.1

Q ss_pred             CCeeEEEECCCCCEEEEecCCCcEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcc
Q 014475           81 EPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECES  160 (424)
Q Consensus        81 ~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~  160 (424)
                      ..+..++++|||+++++...+++|..|+.. ++ ...+......+.+++|.++|+++++...++.+..++.....     
T Consensus        28 ~~~e~iAv~pdG~l~vt~~~~~~I~~i~p~-g~-~~~~~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~-----  100 (302)
T d2p4oa1          28 TFLENLASAPDGTIFVTNHEVGEIVSITPD-GN-QQIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSD-----  100 (302)
T ss_dssp             CCEEEEEECTTSCEEEEETTTTEEEEECTT-CC-EEEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTT-----
T ss_pred             CCcCCEEECCCCCEEEEeCCCCEEEEEeCC-CC-EEEEEcCCCCcceEEEcCCCCeEEEecCCceEEEEEecccc-----
Confidence            357889999999999999889999888854 33 33444566789999999999999988888888888864311     


Q ss_pred             cccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeeec-----------CcceeEEEECCC
Q 014475          161 QRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVF-----------PSVIDAIALDPA  229 (424)
Q Consensus       161 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~-----------~~~i~~~~~~~~  229 (424)
                        .....+. ..........+++.+++  +++++.+.++.+..+|...+........           ......+.++. 
T Consensus       101 --~~~~~~~-~~~~~~~~n~i~~~~~g--~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~-  174 (302)
T d2p4oa1         101 --GTVETLL-TLPDAIFLNGITPLSDT--QYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFG-  174 (302)
T ss_dssp             --SCEEEEE-ECTTCSCEEEEEESSSS--EEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEET-
T ss_pred             --cceeecc-ccCCccccceeEEccCC--CEEeeccccccceeeeccCCcceeEecCCccceeeccCcccccccccccC-
Confidence              1111111 12234557788888887  8888888888898888877653332221           12344555543 


Q ss_pred             CCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCCCcEEEEE--
Q 014475          230 EHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMF--  306 (424)
Q Consensus       230 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~~~~~--  306 (424)
                      +.++++.+..+.|+.++.........       ............+++.+ |+++++...++.|..++.. ++.....  
T Consensus       175 ~~l~~~~~~~~~i~~~~~~~~~~~~~-------~~~~~~~~~pdgia~d~dG~l~va~~~~~~V~~i~p~-G~~~~~~~~  246 (302)
T d2p4oa1         175 NFLYVSNTEKMLLLRIPVDSTDKPGE-------PEIFVEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQA  246 (302)
T ss_dssp             TEEEEEETTTTEEEEEEBCTTSCBCC-------CEEEEESCCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECG
T ss_pred             CceeeecCCCCeEEeccccccccccc-------cccccCCCCCcceEECCCCCEEEEEcCCCcEEEECCC-CCEEEEEec
Confidence            34555667788888888876532111       11111234456799999 8888888889999999865 4433333  


Q ss_pred             eccCCCeeEEEE---EecCceeeeccCC
Q 014475          307 RLAKGPVNNILV---VRRPLYLNLGSFS  331 (424)
Q Consensus       307 ~~~~~~v~~l~~---s~~~~~l~~~~~d  331 (424)
                      ...-...++++|   .+|++.|..++..
T Consensus       247 ~~~~~~pt~vafg~~~~D~~~Lyvtt~~  274 (302)
T d2p4oa1         247 EQGVIGSTAVAFGQTEGDCTAIYVVTNG  274 (302)
T ss_dssp             GGTCTTEEEEEECCSTTTTTEEEEEECT
T ss_pred             CCCCCCceEEEEcCCCCCCCEEEEECCC
Confidence            223346789999   5677777655443

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.28  E-value=5.5e-09  Score=89.76  Aligned_cols=237  Identities=13%  Similarity=0.087  Sum_probs=150.3

Q ss_pred             CCCeeEEEECCCCCEEEEecCCCcEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEeeCC----CcEEEEeCCccc
Q 014475           80 AEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSED----GCVRIWSLLTVF  155 (424)
Q Consensus        80 ~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d----g~i~iwd~~~~~  155 (424)
                      ...+..++|.++|++.++-...+.|..|+.++++....+.........+++.++|+++++...+    +.+...+.....
T Consensus        39 ~~~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~~  118 (319)
T d2dg1a1          39 GLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDN  118 (319)
T ss_dssp             CCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCS
T ss_pred             CcCcEeCEECCCCCEEEEECCCCEEEEEECCCCeEEEEEeCCCCCeeEEEECCCCCEEEEecCCCccceeEEEEcCCCce
Confidence            3455789999999988887788999999987776665555556678999999999887765432    334444443311


Q ss_pred             chhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeC------CCcEEEEecCCCceeeeeecCcceeEEEECCC
Q 014475          156 EECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASE------DRTCKVWSLLKGRLLRNIVFPSVIDAIALDPA  229 (424)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~------d~~v~iwd~~~~~~~~~~~~~~~i~~~~~~~~  229 (424)
                               ......-.........+++.+++  ++.++...      .+.+..++...+........-...+.++|+|+
T Consensus       119 ---------~~~~~~~~~~~~~~nd~~~d~~G--~l~vtd~~~~~~~~~g~v~~~~~dg~~~~~~~~~~~~pnGia~s~d  187 (319)
T d2dg1a1         119 ---------LQDIIEDLSTAYCIDDMVFDSKG--GFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTD  187 (319)
T ss_dssp             ---------CEEEECSSSSCCCEEEEEECTTS--CEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEESSEEEEEECTT
T ss_pred             ---------eeeeccCCCcccCCcceeEEecc--ceeecccccccccCcceeEEEecccceeEEEeeccceeeeeeeccc
Confidence                     11111111123346778888887  55554322      22355555544333322333345678999999


Q ss_pred             CCEEEEE-eCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCCCcEEEEEe
Q 014475          230 EHVFYAG-SRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFR  307 (424)
Q Consensus       230 ~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~~~~~~  307 (424)
                      ++.|+++ +..+.|+.|+++................. ........+++.+ |++.++....+.|.+||. +|+.+..+.
T Consensus       188 g~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~-~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p-~G~~l~~i~  265 (319)
T d2dg1a1         188 EKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYF-TGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQIL  265 (319)
T ss_dssp             SSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEEC-CSSSEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEE
T ss_pred             cceEEEecccCCceEEEEEcCCCceeccccceeeecc-CCccceeeeeEcCCCCEEEEEcCCCEEEEECC-CCcEEEEEe
Confidence            9876555 56789999998754321111000111111 1223356799988 888888888999999995 699998887


Q ss_pred             cc------CCCeeEEEEEecCceeeecc
Q 014475          308 LA------KGPVNNILVVRRPLYLNLGS  329 (424)
Q Consensus       308 ~~------~~~v~~l~~s~~~~~l~~~~  329 (424)
                      ..      ...+++++|.+++..+++.+
T Consensus       266 ~P~~~~~~~~~~~~~~~~~~~~~~~~t~  293 (319)
T d2dg1a1         266 IPGRDEGHMLRSTHPQFIPGTNQLIICS  293 (319)
T ss_dssp             CTTGGGTCSCBCCEEEECTTSCEEEEEE
T ss_pred             CCCcCCCcCceeeeEEEeCCCCEEEEEc
Confidence            43      23578999998877665544

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.27  E-value=5.7e-09  Score=91.50  Aligned_cols=286  Identities=10%  Similarity=0.004  Sum_probs=156.8

Q ss_pred             CCCceEE--EeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCc-eeee--ecCCCCeeE
Q 014475           11 ADTGIGC--WDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQ-VEVK--SLPAEPIKP   85 (424)
Q Consensus        11 ~dg~i~v--wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~-~~~~--~~~~~~v~~   85 (424)
                      ..|.|.+  +|.++++....-.........+..++  |+++++.|.++..  +.+..|.+.... ....  .........
T Consensus        12 ~~~~i~~~~fd~~~~~l~~~~~~~~~~~~~~s~la--~s~d~~~ly~~~~--~~~~~~~i~~~~~~~~~~~~~~~~~p~~   87 (365)
T d1jofa_          12 PPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMT--FDHERKNIYGAAM--KKWSSFAVKSPTEIVHEASHPIGGHPRA   87 (365)
T ss_dssp             SSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEE--ECTTSSEEEEEEB--TEEEEEEEEETTEEEEEEEEECCSSGGG
T ss_pred             CCCCEEEEEEcCCCCeEEEeeeeeccCCCCCCEEE--EcCCCCEEEEEeC--CcEEEEEEeCCCCeEEEeeecCCCCcEE
Confidence            4556754  55566554321111111223355677  9999999988765  567777765432 2211  223445677


Q ss_pred             EEECCCCCEEE--EecC-CCcEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccc
Q 014475           86 IAANSHGTYIA--GGGQ-SGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQR  162 (424)
Q Consensus        86 ~~~s~~~~~l~--~~~~-dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~  162 (424)
                      +.++++++.+.  ++.. .+.|..                     ..+.+++........+...++...           
T Consensus        88 v~~~~~~~~~~v~~a~~~~~~v~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~-----------  135 (365)
T d1jofa_          88 NDADTNTRAIFLLAAKQPPYAVYA---------------------NPFYKFAGYGNVFSVSETGKLEKN-----------  135 (365)
T ss_dssp             GCTTSCCEEEEEEECSSTTCCEEE---------------------EEESSSCCEEEEEEECTTCCEEEE-----------
T ss_pred             EEECCCCCEEEEEEecCCCCEEEE---------------------eEccCCCCcceeEeeeecceecCc-----------
Confidence            88888888543  3221 233333                     333333322221111111111110           


Q ss_pred             cccceEEeecCCcCceeEEEEEEcCceeEEEEEeC-CCcEEEEecCCCceee---eee---cCcceeEEEECCCCCEEEE
Q 014475          163 ASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASE-DRTCKVWSLLKGRLLR---NIV---FPSVIDAIALDPAEHVFYA  235 (424)
Q Consensus       163 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~-d~~v~iwd~~~~~~~~---~~~---~~~~i~~~~~~~~~~~l~~  235 (424)
                          ...........+.++.|+|++  +++++++. ...|.+|+......+.   ...   .......++|+|+++++++
T Consensus       136 ----~~~~~~q~~~h~h~v~~sPdG--~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv  209 (365)
T d1jofa_         136 ----VQNYEYQENTGIHGMVFDPTE--TYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYA  209 (365)
T ss_dssp             ----EEEEECCTTCCEEEEEECTTS--SEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEE
T ss_pred             ----ccCcccCCCCcceEEEECCCC--CEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEE
Confidence                000011122345688899988  66666553 4578888765332221   111   3467889999999998876


Q ss_pred             Ee-CCCcEEEEEcCCCCCCCCCcCceeeee--------------ecccCcCeEEEEecC-CCEEEEeCC------CCcEE
Q 014475          236 GS-RDGSIYIAALNAESPSTSSYGMHIIGS--------------LSDHSKAVTCLAYST-GDLLISGSE------DGMVR  293 (424)
Q Consensus       236 ~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~--------------~~~~~~~i~~~~~~~-~~~l~t~~~------dg~i~  293 (424)
                      .. .++.|.+|+++.......    .....              ...+......+.++| +++|+++..      .+.|.
T Consensus       210 ~~e~~~~V~v~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~  285 (365)
T d1jofa_         210 LMEAGNRICEYVIDPATHMPV----YTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIA  285 (365)
T ss_dssp             EETTTTEEEEEEECTTTCCEE----EEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEE
T ss_pred             eccCCCEEEEEEecCCCceEE----EEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEE
Confidence            65 578899999977542110    00110              112233456789999 888877642      23477


Q ss_pred             EEeCCCCcEEEEE------eccCCCeeEEEEEe-cCceeeec-cCCCceeeccCCCC
Q 014475          294 VWDPITHNIVRMF------RLAKGPVNNILVVR-RPLYLNLG-SFSNPHTSSRRHGS  342 (424)
Q Consensus       294 iwd~~~~~~~~~~------~~~~~~v~~l~~s~-~~~~l~~~-~~d~~i~iw~~~~~  342 (424)
                      .|++.....+...      ......-..++++| +|++|+++ ..++.|.+|++...
T Consensus       286 ~~~~~~~g~~~~~~~~~~~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~~  342 (365)
T d1jofa_         286 GFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE  342 (365)
T ss_dssp             EEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred             EEEecCCCceeeEeEeeEEEcCCCCccEEEecCCCCCEEEEEeCCCCeEEEEEEeCC
Confidence            7877643322211      11223557799998 78877554 67889999988654

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=99.26  E-value=4.5e-09  Score=89.97  Aligned_cols=246  Identities=11%  Similarity=0.111  Sum_probs=155.7

Q ss_pred             CCeeEEEECCCCCEEEEecC-------CCcEEEEEccCcceeeeecc----ccCCeEEEEEccCCcEEEEeeCCCcEEEE
Q 014475           81 EPIKPIAANSHGTYIAGGGQ-------SGDIYMWEVASGRLLKKWHA----HYRAVTCLVFSEDGSFLISGSEDGCVRIW  149 (424)
Q Consensus        81 ~~v~~~~~s~~~~~l~~~~~-------dg~v~iwd~~~~~~~~~~~~----~~~~i~~~~~~~~~~~l~s~~~dg~i~iw  149 (424)
                      .....++|.|+|+++++...       +|.|..||..++........    .......+.|.++++.++++...+.+...
T Consensus        18 ~g~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~vad~~~~i~~~   97 (314)
T d1pjxa_          18 PGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRLGLLVV   97 (314)
T ss_dssp             TTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTTEEEEE
T ss_pred             CCCeEeEEeCCCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeCCCCEEEEEECCCeEEEE
Confidence            34567899999998876433       46788999887765433221    22346789999999888888777778888


Q ss_pred             eCCcccchhcccccccceEEeecCC-cCceeEEEEEEcCceeEEEEEeC---------------CCcEEEEecCCCceee
Q 014475          150 SLLTVFEECESQRASHLYLHSFTGH-TLRITDIVIGYGGVSATIVSASE---------------DRTCKVWSLLKGRLLR  213 (424)
Q Consensus       150 d~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~~l~~~~~---------------d~~v~iwd~~~~~~~~  213 (424)
                      +.........        .....+. -...+++++.+++  ++.++-..               .|.|..++. .++...
T Consensus        98 ~~~g~~~~~~--------~~~~~g~~~~~pndl~~d~~G--~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~-dg~~~~  166 (314)
T d1pjxa_          98 QTDGTFEEIA--------KKDSEGRRMQGCNDCAFDYEG--NLWITAPAGEVAPADYTRSMQEKFGSIYCFTT-DGQMIQ  166 (314)
T ss_dssp             ETTSCEEECC--------SBCTTSCBCBCCCEEEECTTS--CEEEEECBCBCTTSCCCBTTSSSCEEEEEECT-TSCEEE
T ss_pred             eCCCcEEEEE--------eccccccccCCCcEEEECCCC--CEEEecCccCcccccccceeccCCceEEEEee-cCceeE
Confidence            8754221100        0001111 1135678888877  56555321               234444443 344333


Q ss_pred             eeecCcceeEEEECCCCC-----EEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecc-cCcCeEEEEecC-CCEEEEe
Q 014475          214 NIVFPSVIDAIALDPAEH-----VFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSD-HSKAVTCLAYST-GDLLISG  286 (424)
Q Consensus       214 ~~~~~~~i~~~~~~~~~~-----~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~-~~~l~t~  286 (424)
                      ....-...+.++|+|++.     ++++-+..+.|+.|++........   .+....+.+ +......+++.. |+++++.
T Consensus       167 ~~~~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~---~~~~~~~~~~~~~~pdGiavD~~GnlyVa~  243 (314)
T d1pjxa_         167 VDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIEN---KKVWGHIPGTHEGGADGMDFDEDNNLLVAN  243 (314)
T ss_dssp             EEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEE---EEEEEECCCCSSCEEEEEEEBTTCCEEEEE
T ss_pred             eeCCcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccce---eeEEEEccccccccceeeEEecCCcEEEEE
Confidence            333334457889988764     444456778899998865421100   011112222 223456789988 8888888


Q ss_pred             CCCCcEEEEeCCCCcEEEEEeccCCCeeEEEEEecCcee-eeccCCCceeeccCC
Q 014475          287 SEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYL-NLGSFSNPHTSSRRH  340 (424)
Q Consensus       287 ~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l-~~~~~d~~i~iw~~~  340 (424)
                      ...+.|.+||.+.++.+..+..+....++++|.|+++.| ++.+.+|.|...++.
T Consensus       244 ~~~g~I~~~dp~~g~~~~~i~~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~  298 (314)
T d1pjxa_         244 WGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQ  298 (314)
T ss_dssp             ETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECS
T ss_pred             cCCCEEEEEeCCCCEEEEEEECCCCCEEEEEEeCCCCEEEEEECCCCcEEEEECC
Confidence            788999999999888888887766788999999998754 666677777766654

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.26  E-value=1.4e-09  Score=90.66  Aligned_cols=235  Identities=9%  Similarity=0.004  Sum_probs=149.5

Q ss_pred             CCeeEEEECCCCCEEEEe-cCCCcEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhc
Q 014475           81 EPIKPIAANSHGTYIAGG-GQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECE  159 (424)
Q Consensus        81 ~~v~~~~~s~~~~~l~~~-~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~  159 (424)
                      -....++++++|+..++. +..+.+..++............-......++++++++.+++....+.+++++-.+      
T Consensus        14 ~~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~gvav~~~g~i~v~d~~~~~i~~~~~~~------   87 (260)
T d1rwia_          14 LSPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDFNNRVVTLAAGSN------   87 (260)
T ss_dssp             CCEEEEEECTTCCEEEEECSSSCEEEEEC----CEEECCCCSCCSCCCEEECTTCCEEEEETTTEEEEECTTCS------
T ss_pred             CCCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEEEeccCCccCceEEEEcCCCCEEEeeeeeceeeeeeecc------
Confidence            346899999999966654 4556777776544432222222223467899999998877776666666655432      


Q ss_pred             ccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeee-ecCcceeEEEECCCCCEEEEEeC
Q 014475          160 SQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNI-VFPSVIDAIALDPAEHVFYAGSR  238 (424)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~  238 (424)
                           ...+.... ......++++.+++  +++++-..+..+..++.......... ........++++|+++.+++...
T Consensus        88 -----~~~~~~~~-~~~~p~~iavd~~g--~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~~~v~~~~  159 (260)
T d1rwia_          88 -----NQTVLPFD-GLNYPEGLAVDTQG--AVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTD  159 (260)
T ss_dssp             -----CCEECCCC-SCCSEEEEEECTTC--CEEEEEGGGTEEEEECTTCSSCEECCCCSCCSCCEEEECTTCCEEEEEGG
T ss_pred             -----ceeeeeee-eeeecccccccccc--eeEeeccccccccccccccceeeeeeecccCCcceeeecCCCCEeeeccc
Confidence                 11121112 22456788888876  67666666667777776544322211 12345678999999998888888


Q ss_pred             CCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCCCcEEEEEe-ccCCCeeEE
Q 014475          239 DGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFR-LAKGPVNNI  316 (424)
Q Consensus       239 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~l  316 (424)
                      ++.|..++.+...        . .............+++.+ ++++++....+.|..++..... ...+. ..-.....|
T Consensus       160 ~~~i~~~d~~~~~--------~-~~~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~~-~~~~~~~~~~~P~~i  229 (260)
T d1rwia_         160 NNRVVKLEAESNN--------Q-VVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTT-STVLPFTGLNTPLAV  229 (260)
T ss_dssp             GTEEEEECTTTCC--------E-EECCCSSCCSEEEEEECTTCCEEEEETTTTEEEEECTTCSC-CEECCCCSCCCEEEE
T ss_pred             cccccccccccce--------e-eeeeccccCCCccceeeeeeeeeeeecCCCEEEEEeCCCCe-EEEEccCCCCCeEEE
Confidence            8899999887653        1 111123445678899998 8888888888889888865443 22222 222456799


Q ss_pred             EEEecCceeeeccCCCceeeccC
Q 014475          317 LVVRRPLYLNLGSFSNPHTSSRR  339 (424)
Q Consensus       317 ~~s~~~~~l~~~~~d~~i~iw~~  339 (424)
                      +++++|..+++-..++.|+..+.
T Consensus       230 ~~d~~g~l~vad~~~~rI~~i~~  252 (260)
T d1rwia_         230 AVDSDRTVYVADRGNDRVVKLTS  252 (260)
T ss_dssp             EECTTCCEEEEEGGGTEEEEECC
T ss_pred             EEeCCCCEEEEECCCCEEEEEeC
Confidence            99999988777666666665443

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.25  E-value=1.9e-08  Score=84.61  Aligned_cols=233  Identities=9%  Similarity=0.180  Sum_probs=160.7

Q ss_pred             CeeEEEECCCCCEEEEecCCCcEEEEEccCcceeeeecc------ccCCeEEEEEccC-CcEEEE-eeCCCcEEEEeCCc
Q 014475           82 PIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHA------HYRAVTCLVFSED-GSFLIS-GSEDGCVRIWSLLT  153 (424)
Q Consensus        82 ~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~------~~~~i~~~~~~~~-~~~l~s-~~~dg~i~iwd~~~  153 (424)
                      ....++++++++++++-..+..|++||. +|+.+..+..      .......+.+.++ +..+++ .+.++.|..++...
T Consensus        24 ~P~gvavd~dg~i~VaD~~n~rI~v~d~-~G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g  102 (279)
T d1q7fa_          24 EPSGVAVNAQNDIIVADTNNHRIQIFDK-EGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQYG  102 (279)
T ss_dssp             CEEEEEECTTCCEEEEEGGGTEEEEECT-TSCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECTTS
T ss_pred             CccEEEEcCCCCEEEEECCCCEEEEEeC-CCCEEEEecccCCCcccccccccccccccccccceeccCCccccccccccc
Confidence            4689999999998888777788999995 4666655522      1223456666554 334433 33455677777532


Q ss_pred             ccchhcccccccceEEee-cCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeee---cCcceeEEEECCC
Q 014475          154 VFEECESQRASHLYLHSF-TGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV---FPSVIDAIALDPA  229 (424)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~---~~~~i~~~~~~~~  229 (424)
                                  .....+ .........+++.+++  ..+++....+.+.+++. +++.+..+.   +......+++.++
T Consensus       103 ------------~~~~~~~~~~~~~p~~~avd~~G--~i~v~~~~~~~~~~~~~-~g~~~~~~g~~~~~~~~~~i~~d~~  167 (279)
T d1q7fa_         103 ------------QFVRKFGATILQHPRGVTVDNKG--RIIVVECKVMRVIIFDQ-NGNVLHKFGCSKHLEFPNGVVVNDK  167 (279)
T ss_dssp             ------------CEEEEECTTTCSCEEEEEECTTS--CEEEEETTTTEEEEECT-TSCEEEEEECTTTCSSEEEEEECSS
T ss_pred             ------------cceeecCCCcccccceeccccCC--cEEEEeeccceeeEecc-CCceeecccccccccccceeeeccc
Confidence                        122222 2234456677887776  77777777778888885 456666654   4456788999999


Q ss_pred             CCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeee--cccCcCeEEEEecC-CCEEEEeCC-CCcEEEEeCCCCcEEEE
Q 014475          230 EHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSL--SDHSKAVTCLAYST-GDLLISGSE-DGMVRVWDPITHNIVRM  305 (424)
Q Consensus       230 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~--~~~~~~i~~~~~~~-~~~l~t~~~-dg~i~iwd~~~~~~~~~  305 (424)
                      ++.+++....+.|++||....          .+..+  .+.......+++.+ ++++++-.. ++.|.+|+ .+|+.+.+
T Consensus       168 g~i~v~d~~~~~V~~~d~~G~----------~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~-~~G~~~~~  236 (279)
T d1q7fa_         168 QEIFISDNRAHCVKVFNYEGQ----------YLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFT-QDGQLISA  236 (279)
T ss_dssp             SEEEEEEGGGTEEEEEETTCC----------EEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEEC-TTSCEEEE
T ss_pred             eeEEeeeccccceeeeecCCc----------eeeeecccccccCCcccccccCCeEEEEECCCCcEEEEEC-CCCCEEEE
Confidence            998888888899999997653          23333  23455678899999 887777544 55799999 56888888


Q ss_pred             EeccC--CCeeEEEEEecCceeeeccCCCceeeccCCCC
Q 014475          306 FRLAK--GPVNNILVVRRPLYLNLGSFSNPHTSSRRHGS  342 (424)
Q Consensus       306 ~~~~~--~~v~~l~~s~~~~~l~~~~~d~~i~iw~~~~~  342 (424)
                      +....  .....+++.|+|.+++ ++.+..|++|+....
T Consensus       237 ~~~~~~~~~p~~vav~~dG~l~V-~~~n~~v~~fr~~~~  274 (279)
T d1q7fa_         237 LESKVKHAQCFDVALMDDGSVVL-ASKDYRLYIYRYVQL  274 (279)
T ss_dssp             EEESSCCSCEEEEEEETTTEEEE-EETTTEEEEEECSCC
T ss_pred             EeCCCCCCCEeEEEEeCCCcEEE-EeCCCeEEEEEeeee
Confidence            76432  3578999999997655 457889999998754

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.21  E-value=3.1e-09  Score=96.22  Aligned_cols=310  Identities=12%  Similarity=0.091  Sum_probs=169.9

Q ss_pred             CCCceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCC--------CceeEEEEECCCCceeeeec---C
Q 014475           11 ADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSA--------SSGSILYWSWSKPQVEVKSL---P   79 (424)
Q Consensus        11 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~--------~~g~i~vwd~~~~~~~~~~~---~   79 (424)
                      .+|.|.+||+.+++...-+....-....+....  ++||+++++....        ..+.+.++|+.++.......   .
T Consensus        35 ~~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~--~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~~l~~~~~~  112 (465)
T d1xfda1          35 QKGTVRLWNVETNTSTVLIEGKKIESLRAIRYE--ISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVS  112 (465)
T ss_dssp             SSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEE--ECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCC
T ss_pred             CCCcEEEEECCCCCEEEEEcCccccccccceeE--ECCCCCeEEEEEcccceeEeeccccEEEEEccCCceeeccCccCC
Confidence            688999999998887555544433333455555  9999998876531        12789999998877543322   2


Q ss_pred             CCCeeEEEECCCCCEEEEecCCCcEEEEEccCcceeeeecc-ccC-----------------CeEEEEEccCCcEEEEee
Q 014475           80 AEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHA-HYR-----------------AVTCLVFSEDGSFLISGS  141 (424)
Q Consensus        80 ~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~-~~~-----------------~i~~~~~~~~~~~l~s~~  141 (424)
                      ...+....|||||+.+|-.. ++.|.+.+..++..++.... ..+                 .-..+-|+|||++|+...
T Consensus       113 ~~~l~~~~wSPDG~~iafv~-~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~~  191 (465)
T d1xfda1         113 NAKLQYAGWGPKGQQLIFIF-ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAA  191 (465)
T ss_dssp             SCCCSBCCBCSSTTCEEEEE-TTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEE
T ss_pred             ccccceeeeccCCceEEEEe-cceEEEEecCCCceEEEecccCcceeeccccchhhhhhhccccceEEECCCCCeEEEEE
Confidence            34566789999999998865 56899988877655543321 111                 125778999999999875


Q ss_pred             C-CCcEEEEeCCcccch----hc-------cccccc--ceEEee---------------cCCcCceeEEEEEEcCceeEE
Q 014475          142 E-DGCVRIWSLLTVFEE----CE-------SQRASH--LYLHSF---------------TGHTLRITDIVIGYGGVSATI  192 (424)
Q Consensus       142 ~-dg~i~iwd~~~~~~~----~~-------~~~~~~--~~~~~~---------------~~~~~~i~~~~~~~~~~~~~l  192 (424)
                      . +..+..+.+......    ..       ......  ..+..+               .....-+..+.|.+++  +.+
T Consensus       192 ~D~s~V~~~~~~~~~~~~~p~~~~~~Yp~~G~~np~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~~~~~W~~d~--~~~  269 (465)
T d1xfda1         192 INDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATST--KVA  269 (465)
T ss_dssp             EECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSS--EEE
T ss_pred             ecccccceeecccccccccceeeeeeccccCCCCCceeEEEEecCCCcEEEEEeccCcCccccceeeeeEEcCCC--eEE
Confidence            3 334444433211000    00       000000  000000               1112235667888776  554


Q ss_pred             EEE-eCCC---cEEEEecCCCceeeeee--cCcc----eeEEEECCCCCEEE---EEeCCC--cEEEEEcCCCCCCCCCc
Q 014475          193 VSA-SEDR---TCKVWSLLKGRLLRNIV--FPSV----IDAIALDPAEHVFY---AGSRDG--SIYIAALNAESPSTSSY  257 (424)
Q Consensus       193 ~~~-~~d~---~v~iwd~~~~~~~~~~~--~~~~----i~~~~~~~~~~~l~---~~~~dg--~i~i~d~~~~~~~~~~~  257 (424)
                      +.. ..+.   .+.++|..+++....+.  .+..    -....|+|+|+.++   ..-.+|  .++..++........  
T Consensus       270 ~~~~nR~q~~~~i~~~d~~tg~~~~~~~e~~~~wv~~~~~~p~~~~dg~~~~fi~~se~~g~~~ly~~~~~~~~~~~~--  347 (465)
T d1xfda1         270 VTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSS--  347 (465)
T ss_dssp             EEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSS--
T ss_pred             EEEEccccccceEEEEcCCCCcEEEEEEEcCCceEeccCCceeEccCCCeeEEEEeeeecccCceEEEEeccccccCC--
Confidence            443 3232   57889999888765544  2221    23467889887543   222333  455444432211100  


Q ss_pred             CceeeeeecccCcCeEEE-EecC-CC-EEEEeCCCC--cEEEEe--CCCCcEEEEEe---ccCCCeeEEEEEecCceeee
Q 014475          258 GMHIIGSLSDHSKAVTCL-AYST-GD-LLISGSEDG--MVRVWD--PITHNIVRMFR---LAKGPVNNILVVRRPLYLNL  327 (424)
Q Consensus       258 ~~~~~~~~~~~~~~i~~~-~~~~-~~-~l~t~~~dg--~i~iwd--~~~~~~~~~~~---~~~~~v~~l~~s~~~~~l~~  327 (424)
                       ......+....-.|..+ .|++ ++ .++++..++  .-.+|.  +..+.....+.   .......++.|||++++++.
T Consensus       348 -~~~~~~LT~G~w~V~~i~~~d~~~~~vyF~a~~~~p~~~hly~v~l~g~~~~~~lt~~~~~~~~~~~~~~S~~~~y~v~  426 (465)
T d1xfda1         348 -NDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFLL  426 (465)
T ss_dssp             -SCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEEEE
T ss_pred             -CceeEEeccCCceEEEEEEEcCCCCEEEEEEeCCCCCceEEEEEECCCCCcceeeccccCCCCCEEEEEECCCCCEEEE
Confidence             01222333334455554 5777 44 444554432  223444  33322222221   23345679999999999874


Q ss_pred             c
Q 014475          328 G  328 (424)
Q Consensus       328 ~  328 (424)
                      .
T Consensus       427 ~  427 (465)
T d1xfda1         427 K  427 (465)
T ss_dssp             E
T ss_pred             E
Confidence            3

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.20  E-value=3.7e-09  Score=88.02  Aligned_cols=189  Identities=8%  Similarity=-0.039  Sum_probs=126.7

Q ss_pred             eecCCCccccCCCCceeEEEEECCCCceeeeecCCCCeeEEEECCCCCEEEEecCCCcEEEEEccCcceeeeeccccCCe
Q 014475           46 FLASSQLREQPSASSGSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAV  125 (424)
Q Consensus        46 ~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i  125 (424)
                      +.+++...++.... +.+++++-.+...............+++.++++++++-..+..+..++.................
T Consensus        64 v~~~g~i~v~d~~~-~~i~~~~~~~~~~~~~~~~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p  142 (260)
T d1rwia_          64 VDGAGTVYVTDFNN-RVVTLAAGSNNQTVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDP  142 (260)
T ss_dssp             ECTTCCEEEEETTT-EEEEECTTCSCCEECCCCSCCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEECCCCSCCSC
T ss_pred             EcCCCCEEEeeeee-ceeeeeeeccceeeeeeeeeeecccccccccceeEeeccccccccccccccceeeeeeecccCCc
Confidence            88898877665554 77777665555444433345678999999999988877666777777765543322222223456


Q ss_pred             EEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEe
Q 014475          126 TCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWS  205 (424)
Q Consensus       126 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd  205 (424)
                      ..+++.++++.+++...++.|..++.+...           ........-.....+++.+++  +++++....+.|..++
T Consensus       143 ~~i~~~~~g~~~v~~~~~~~i~~~d~~~~~-----------~~~~~~~~~~~p~gi~~d~~g--~l~vsd~~~~~i~~~~  209 (260)
T d1rwia_         143 DGVAVDNSGNVYVTDTDNNRVVKLEAESNN-----------QVVLPFTDITAPWGIAVDEAG--TVYVTEHNTNQVVKLL  209 (260)
T ss_dssp             CEEEECTTCCEEEEEGGGTEEEEECTTTCC-----------EEECCCSSCCSEEEEEECTTC--CEEEEETTTTEEEEEC
T ss_pred             ceeeecCCCCEeeeccccccccccccccce-----------eeeeeccccCCCccceeeeee--eeeeeecCCCEEEEEe
Confidence            789999999988888888899999985421           111112333456788888876  7777777788888888


Q ss_pred             cCCCceeeeee--cCcceeEEEECCCCCEEEEEeCCCcEEEEEcCC
Q 014475          206 LLKGRLLRNIV--FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNA  249 (424)
Q Consensus       206 ~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~  249 (424)
                      ..... ...+.  .-.....+++++++.++++-..+++|+.++...
T Consensus       210 ~~~~~-~~~~~~~~~~~P~~i~~d~~g~l~vad~~~~rI~~i~~~~  254 (260)
T d1rwia_         210 AGSTT-STVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSLE  254 (260)
T ss_dssp             TTCSC-CEECCCCSCCCEEEEEECTTCCEEEEEGGGTEEEEECCCG
T ss_pred             CCCCe-EEEEccCCCCCeEEEEEeCCCCEEEEECCCCEEEEEeCCC
Confidence            65443 22222  224578999999998777766677776665544

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.18  E-value=3.4e-08  Score=82.46  Aligned_cols=235  Identities=12%  Similarity=0.083  Sum_probs=144.0

Q ss_pred             ceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCCCc--eeEEEEECCCCceeeeecCCCCeeEEEECCC
Q 014475           14 GIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASS--GSILYWSWSKPQVEVKSLPAEPIKPIAANSH   91 (424)
Q Consensus        14 ~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~--g~i~vwd~~~~~~~~~~~~~~~v~~~~~s~~   91 (424)
                      .|.|-|.. |...+.+....   ..+...+  |+|||+.||......  ..+.+.+...........+.+......|+|+
T Consensus        20 ~l~i~d~d-G~~~~~l~~~~---~~~~sP~--wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spd   93 (269)
T d2hqsa1          20 ELRVSDYD-GYNQFVVHRSP---QPLMSPA--WSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPD   93 (269)
T ss_dssp             EEEEEETT-SCSCEEEEEES---SCEEEEE--ECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEECCSSCEEEEEECTT
T ss_pred             EEEEEcCC-CCCcEEEecCC---CceeeeE--ECCCCCEEEEEEeeccCcceeeeecccCceeEEeeeecccccceecCC
Confidence            57787876 44444443222   3355666  999999999764432  4577778888877777788889999999999


Q ss_pred             CCEEEEecC-CCcEEEEEccCc-ceeeeeccccCCeEEEEEccCCcEEE-EeeCCCc--EEEEeCCcccchhcccccccc
Q 014475           92 GTYIAGGGQ-SGDIYMWEVASG-RLLKKWHAHYRAVTCLVFSEDGSFLI-SGSEDGC--VRIWSLLTVFEECESQRASHL  166 (424)
Q Consensus        92 ~~~l~~~~~-dg~v~iwd~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~-s~~~dg~--i~iwd~~~~~~~~~~~~~~~~  166 (424)
                      |+.++.... ++...++..... .................++++++.++ +...+|.  |.+.++...            
T Consensus        94 g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~------------  161 (269)
T d2hqsa1          94 GSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGG------------  161 (269)
T ss_dssp             SSEEEEEECTTSSCEEEEEETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSS------------
T ss_pred             CCeeeEeeecCCccceeecccccccceeeeeccccccccccccccccceecccccCCceEeeeecccc------------
Confidence            998887543 333333332222 22222233444455666777666544 4444554  444555331            


Q ss_pred             eEEeecCCcCceeEEEEEEcCceeEEEEE-eCCCcEEEE--ecCCCceeeeeecCcceeEEEECCCCCEEEEEeC---CC
Q 014475          167 YLHSFTGHTLRITDIVIGYGGVSATIVSA-SEDRTCKVW--SLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSR---DG  240 (424)
Q Consensus       167 ~~~~~~~~~~~i~~~~~~~~~~~~~l~~~-~~d~~v~iw--d~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---dg  240 (424)
                      .......+........|+|++  ..++.. ...+...+|  |...+. ..............|+|||+.|+..+.   ..
T Consensus       162 ~~~~~~~~~~~~~~~~~spdg--~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~~p~~SPDG~~i~f~s~~~~~~  238 (269)
T d2hqsa1         162 APQRITWEGSQNQDADVSSDG--KFMVMVSSNGGQQHIAKQDLATGG-VQVLSSTFLDETPSLAPNGTMVIYSSSQGMGS  238 (269)
T ss_dssp             CCEECCCSSSEEEEEEECTTS--SEEEEEEECSSCEEEEEEETTTCC-EEECCCSSSCEEEEECTTSSEEEEEEEETTEE
T ss_pred             cceeeeccccccccccccccc--ceeEEEeecCCceeeeEeeccccc-ceEeecCccccceEECCCCCEEEEEEcCCCCc
Confidence            122233455666777888888  555544 444555554  444333 333345566778899999999876553   34


Q ss_pred             cEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC
Q 014475          241 SIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST  279 (424)
Q Consensus       241 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  279 (424)
                      .|++++++...          ...+....+.+...+|+|
T Consensus       239 ~l~~~~~dg~~----------~~~lt~~~g~~~~p~WSP  267 (269)
T d2hqsa1         239 VLNLVSTDGRF----------KARLPATDGQVKFPAWSP  267 (269)
T ss_dssp             EEEEEETTSCC----------EEECCCSSSEEEEEEECC
T ss_pred             EEEEEECCCCC----------EEEEeCCCCcEEeEEeCC
Confidence            68899998753          334555566777888987

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=99.18  E-value=2.4e-08  Score=85.37  Aligned_cols=231  Identities=10%  Similarity=0.054  Sum_probs=147.5

Q ss_pred             eecCCCccccCCCC------ceeEEEEECCCCceeeeecC-----CCCeeEEEECCCCCEEEEecCCCcEEEEEccCcce
Q 014475           46 FLASSQLREQPSAS------SGSILYWSWSKPQVEVKSLP-----AEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRL  114 (424)
Q Consensus        46 ~~~~~~~l~~~~~~------~g~i~vwd~~~~~~~~~~~~-----~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~  114 (424)
                      |.++|++.++....      +|.|..||..++........     ......++|.++++.++++...+.|..++...+..
T Consensus        25 ~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~vad~~~~i~~~~~~g~~~  104 (314)
T d1pjxa_          25 FDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRLGLLVVQTDGTFE  104 (314)
T ss_dssp             ECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTTEEEEEETTSCEE
T ss_pred             EeCCCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeCCCCEEEEEECCCeEEEEeCCCcEE
Confidence            88999877654321      26799999887765443321     23467899999999888777667788888765533


Q ss_pred             eeeecccc----CCeEEEEEccCCcEEEEeeC---------------CCcEEEEeCCcccchhcccccccceEEeecCCc
Q 014475          115 LKKWHAHY----RAVTCLVFSEDGSFLISGSE---------------DGCVRIWSLLTVFEECESQRASHLYLHSFTGHT  175 (424)
Q Consensus       115 ~~~~~~~~----~~i~~~~~~~~~~~l~s~~~---------------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  175 (424)
                      ........    ...+.+.+.++|++.++-..               .|.|..++...            ... .+...-
T Consensus       105 ~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~dg------------~~~-~~~~~~  171 (314)
T d1pjxa_         105 EIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDG------------QMI-QVDTAF  171 (314)
T ss_dssp             ECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTTS------------CEE-EEEEEE
T ss_pred             EEEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEeecC------------cee-EeeCCc
Confidence            22111111    23678999999988776432               23344443321            111 111122


Q ss_pred             CceeEEEEEEcCce---eEEEEEeCCCcEEEEecCCCceeee------ee--cCcceeEEEECCCCCEEEEEeCCCcEEE
Q 014475          176 LRITDIVIGYGGVS---ATIVSASEDRTCKVWSLLKGRLLRN------IV--FPSVIDAIALDPAEHVFYAGSRDGSIYI  244 (424)
Q Consensus       176 ~~i~~~~~~~~~~~---~~l~~~~~d~~v~iwd~~~~~~~~~------~~--~~~~i~~~~~~~~~~~l~~~~~dg~i~i  244 (424)
                      ...+.++|++++++   .++++-+..+.|..||+.....+..      +.  .......+++.++|+++++....+.|.+
T Consensus       172 ~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~~g~I~~  251 (314)
T d1pjxa_         172 QFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEV  251 (314)
T ss_dssp             SSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEE
T ss_pred             ceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEecCCcEEEEEcCCCEEEE
Confidence            23467889887632   2444556778899998764332221      11  1234568999999998888888899999


Q ss_pred             EEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CC-EEEEeCCCCcEEEEeCC
Q 014475          245 AALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GD-LLISGSEDGMVRVWDPI  298 (424)
Q Consensus       245 ~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~-~l~t~~~dg~i~iwd~~  298 (424)
                      ||.+.+.         ....+......+++++|.| ++ ++++.+.+|.|...++.
T Consensus       252 ~dp~~g~---------~~~~i~~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~  298 (314)
T d1pjxa_         252 FGPDGGQ---------PKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQ  298 (314)
T ss_dssp             ECTTCBS---------CSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECS
T ss_pred             EeCCCCE---------EEEEEECCCCCEEEEEEeCCCCEEEEEECCCCcEEEEECC
Confidence            9987653         2334444556789999998 54 67777888888888865

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.01  E-value=3.2e-07  Score=76.83  Aligned_cols=231  Identities=14%  Similarity=0.176  Sum_probs=151.5

Q ss_pred             EEecceeecCCCccccCCCCceeEEEEECCCCceeeeec-------CCCCeeEEEECCC-CCEEEE-ecCCCcEEEEEcc
Q 014475           40 ACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSL-------PAEPIKPIAANSH-GTYIAG-GGQSGDIYMWEVA  110 (424)
Q Consensus        40 ~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~~~-------~~~~v~~~~~s~~-~~~l~~-~~~dg~v~iwd~~  110 (424)
                      ..++  +.++++.+++-... +.|++||.+.. ......       .......+++.++ +..+++ .+.++.|..++. 
T Consensus        26 ~gva--vd~dg~i~VaD~~n-~rI~v~d~~G~-~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~-  100 (279)
T d1q7fa_          26 SGVA--VNAQNDIIVADTNN-HRIQIFDKEGR-FKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQ-  100 (279)
T ss_dssp             EEEE--ECTTCCEEEEEGGG-TEEEEECTTSC-EEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECT-
T ss_pred             cEEE--EcCCCCEEEEECCC-CEEEEEeCCCC-EEEEecccCCCcccccccccccccccccccceeccCCccccccccc-
Confidence            4555  88999876665554 89999997643 222221       1113445565554 444443 344567777775 


Q ss_pred             Ccceeeeec-cccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEee--cCCcCceeEEEEEEcC
Q 014475          111 SGRLLKKWH-AHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSF--TGHTLRITDIVIGYGG  187 (424)
Q Consensus       111 ~~~~~~~~~-~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~~~~~~~~  187 (424)
                      .+.....+. ........+++.++++.+++....+.+.+++...            ..+..+  ..+......+++.+++
T Consensus       101 ~g~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~g------------~~~~~~g~~~~~~~~~~i~~d~~g  168 (279)
T d1q7fa_         101 YGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNG------------NVLHKFGCSKHLEFPNGVVVNDKQ  168 (279)
T ss_dssp             TSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTS------------CEEEEEECTTTCSSEEEEEECSSS
T ss_pred             cccceeecCCCcccccceeccccCCcEEEEeeccceeeEeccCC------------ceeecccccccccccceeeeccce
Confidence            555555553 3456678999999999888877778888888632            122222  3455667788887776


Q ss_pred             ceeEEEEEeCCCcEEEEecCCCceeeeeec---CcceeEEEECCCCCEEEEEeC-CCcEEEEEcCCCCCCCCCcCceeee
Q 014475          188 VSATIVSASEDRTCKVWSLLKGRLLRNIVF---PSVIDAIALDPAEHVFYAGSR-DGSIYIAALNAESPSTSSYGMHIIG  263 (424)
Q Consensus       188 ~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~---~~~i~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~  263 (424)
                        +.+++....+.|.+||. +++.+..+..   ......++++++|+++++-.. ++.|.+|+...          +.+.
T Consensus       169 --~i~v~d~~~~~V~~~d~-~G~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~~G----------~~~~  235 (279)
T d1q7fa_         169 --EIFISDNRAHCVKVFNY-EGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQDG----------QLIS  235 (279)
T ss_dssp             --EEEEEEGGGTEEEEEET-TCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTTS----------CEEE
T ss_pred             --eEEeeeccccceeeeec-CCceeeeecccccccCCcccccccCCeEEEEECCCCcEEEEECCCC----------CEEE
Confidence              78888888899999996 4666666642   345788999999997776543 45688988543          2333


Q ss_pred             eec--ccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCCCc
Q 014475          264 SLS--DHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHN  301 (424)
Q Consensus       264 ~~~--~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~  301 (424)
                      .+.  ........+++.| +. |++++.+..|++|......
T Consensus       236 ~~~~~~~~~~p~~vav~~dG~-l~V~~~n~~v~~fr~~~~~  275 (279)
T d1q7fa_         236 ALESKVKHAQCFDVALMDDGS-VVLASKDYRLYIYRYVQLA  275 (279)
T ss_dssp             EEEESSCCSCEEEEEEETTTE-EEEEETTTEEEEEECSCCC
T ss_pred             EEeCCCCCCCEeEEEEeCCCc-EEEEeCCCeEEEEEeeeec
Confidence            332  2234578899999 55 4555678999999987654

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.93  E-value=4.5e-06  Score=70.15  Aligned_cols=225  Identities=14%  Similarity=0.085  Sum_probs=145.3

Q ss_pred             EEEECC-CCCEEEEecCCCcEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhccccc
Q 014475           85 PIAANS-HGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRA  163 (424)
Q Consensus        85 ~~~~s~-~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~  163 (424)
                      +..|++ ++.+..+--..+.|.-||.++++.. .+. ....+.++.+.+++.++++ +.+ .+.++|..++.        
T Consensus        22 gp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~-~~~-~~~~~~~i~~~~dg~l~va-~~~-gl~~~d~~tg~--------   89 (295)
T d2ghsa1          22 GPTFDPASGTAWWFNILERELHELHLASGRKT-VHA-LPFMGSALAKISDSKQLIA-SDD-GLFLRDTATGV--------   89 (295)
T ss_dssp             EEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEE-CSSCEEEEEEEETTEEEEE-ETT-EEEEEETTTCC--------
T ss_pred             CCeEECCCCEEEEEECCCCEEEEEECCCCeEE-EEE-CCCCcEEEEEecCCCEEEE-EeC-ccEEeecccce--------
Confidence            345665 4445555445678999998877543 222 3456889999988876665 455 58899987632        


Q ss_pred             ccceEEeecC--CcCceeEEEEEEcCceeEEEEEeC----CCcEEEEecCCCceeeeeecCcceeEEEECCCCCEEEEE-
Q 014475          164 SHLYLHSFTG--HTLRITDIVIGYGGVSATIVSASE----DRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAG-  236 (424)
Q Consensus       164 ~~~~~~~~~~--~~~~i~~~~~~~~~~~~~l~~~~~----d~~v~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-  236 (424)
                       ...+.....  ....++++.+.+++  ++.++...    .+.-.+|.+..++.......-...+.++|+++++.++.. 
T Consensus        90 -~~~l~~~~~~~~~~~~nd~~vd~~G--~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~~~~~~Ng~~~s~d~~~l~~~d  166 (295)
T d2ghsa1          90 -LTLHAELESDLPGNRSNDGRMHPSG--ALWIGTMGRKAETGAGSIYHVAKGKVTKLFADISIPNSICFSPDGTTGYFVD  166 (295)
T ss_dssp             -EEEEECSSTTCTTEEEEEEEECTTS--CEEEEEEETTCCTTCEEEEEEETTEEEEEEEEESSEEEEEECTTSCEEEEEE
T ss_pred             -eeEEeeeecCCCcccceeeEECCCC--CEEEEeccccccccceeEeeecCCcEEEEeeccCCcceeeecCCCceEEEee
Confidence             111211111  22357788888887  55444332    234566777677665555544567889999999866554 


Q ss_pred             eCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCCCcEEEEEeccCCCeeE
Q 014475          237 SRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNN  315 (424)
Q Consensus       237 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~  315 (424)
                      +..+.|+.|+++......... ........+.......+++.. |++.++.-..+.|..||. +|+.+..+......+++
T Consensus       167 t~~~~I~~~~~d~~~~~~~~~-~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~dp-~G~~~~~i~lP~~~~T~  244 (295)
T d2ghsa1         167 TKVNRLMRVPLDARTGLPTGK-AEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPGKQTTC  244 (295)
T ss_dssp             TTTCEEEEEEBCTTTCCBSSC-CEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSCSBEEE
T ss_pred             cccceeeEeeecccccccccc-eEEEeccCcccccccceEEcCCCCEEeeeeCCCceEEecC-CCcEeeEecCCCCceEE
Confidence            567789999986543221111 122223334455678889988 887777667788999994 69999999877778999


Q ss_pred             EEEE-ecCceee
Q 014475          316 ILVV-RRPLYLN  326 (424)
Q Consensus       316 l~~s-~~~~~l~  326 (424)
                      ++|- +|.+.|.
T Consensus       245 ~~FGG~d~~~Ly  256 (295)
T d2ghsa1         245 PAFIGPDASRLL  256 (295)
T ss_dssp             EEEESTTSCEEE
T ss_pred             EEEeCCCCCEEE
Confidence            9997 5665554

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=98.82  E-value=1.3e-06  Score=76.10  Aligned_cols=168  Identities=9%  Similarity=0.053  Sum_probs=102.8

Q ss_pred             CCeeEEEECCCCCEEEEecC-CCcEEEEEccCcceee---ee--ccccCCeEEEEEccCCcEEEEe-eCCCcEEEEeCCc
Q 014475           81 EPIKPIAANSHGTYIAGGGQ-SGDIYMWEVASGRLLK---KW--HAHYRAVTCLVFSEDGSFLISG-SEDGCVRIWSLLT  153 (424)
Q Consensus        81 ~~v~~~~~s~~~~~l~~~~~-dg~v~iwd~~~~~~~~---~~--~~~~~~i~~~~~~~~~~~l~s~-~~dg~i~iwd~~~  153 (424)
                      ..+.++.|+|||++++++.. ...|.+|+......+.   ..  .........+.|+|+++++.+. ..+++|.+|++..
T Consensus       145 ~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~  224 (365)
T d1jofa_         145 TGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDP  224 (365)
T ss_dssp             CCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECT
T ss_pred             CcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEeccCCCEEEEEEecC
Confidence            35789999999998887753 3468888765432221   11  1234678999999999987554 4578899999865


Q ss_pred             ccchhcccccccc--------eEEeecCCcCceeEEEEEEcCceeEEEEEeC-C-----CcEEEEecCCCceeeee---e
Q 014475          154 VFEECESQRASHL--------YLHSFTGHTLRITDIVIGYGGVSATIVSASE-D-----RTCKVWSLLKGRLLRNI---V  216 (424)
Q Consensus       154 ~~~~~~~~~~~~~--------~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~-d-----~~v~iwd~~~~~~~~~~---~  216 (424)
                      .............        .......+......+.++|++  ++|+++.. +     +.|..|++.....+...   .
T Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG--~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~  302 (365)
T d1jofa_         225 ATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSG--KYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLS  302 (365)
T ss_dssp             TTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTS--SEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEE
T ss_pred             CCceEEEEeeeeccccccccccccccccccCCccceEECCCC--CEEEEEcccCCCccceEEEEEEecCCCceeeEeEee
Confidence            3211000000000        000011223345678899998  77766643 2     23777777543222211   1


Q ss_pred             ----cCcceeEEEECC-CCCEEEEEe-CCCcEEEEEcCCC
Q 014475          217 ----FPSVIDAIALDP-AEHVFYAGS-RDGSIYIAALNAE  250 (424)
Q Consensus       217 ----~~~~i~~~~~~~-~~~~l~~~~-~dg~i~i~d~~~~  250 (424)
                          .......++++| +|++|+++. .++.|.+|+++..
T Consensus       303 ~~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~~  342 (365)
T d1jofa_         303 PTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE  342 (365)
T ss_dssp             ECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred             EEEcCCCCccEEEecCCCCCEEEEEeCCCCeEEEEEEeCC
Confidence                234567899998 789887775 6789999998764

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.81  E-value=2.5e-06  Score=72.70  Aligned_cols=216  Identities=12%  Similarity=0.048  Sum_probs=128.7

Q ss_pred             CCCceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCCC---ceeEEEEECCCCceeeeecC---CCCee
Q 014475           11 ADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSAS---SGSILYWSWSKPQVEVKSLP---AEPIK   84 (424)
Q Consensus        11 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~---~g~i~vwd~~~~~~~~~~~~---~~~v~   84 (424)
                      .++.|..||.++++....+....   .....++  +.++|+++++...+   .+.+...+............   ....+
T Consensus        59 ~~g~I~ri~p~g~~~~~~~~~~~---~~p~gla--~~~dG~l~va~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~n  133 (319)
T d2dg1a1          59 FEGNIFKINPETKEIKRPFVSHK---ANPAAIK--IHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCID  133 (319)
T ss_dssp             TTCEEEEECTTTCCEEEEEECSS---SSEEEEE--ECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEE
T ss_pred             CCCEEEEEECCCCeEEEEEeCCC---CCeeEEE--ECCCCCEEEEecCCCccceeEEEEcCCCceeeeeccCCCcccCCc
Confidence            34555555555444333332222   2344556  89999877764321   14455555555544333222   34578


Q ss_pred             EEEECCCCCEEEEecC------CCcEEEEEccCcceeeeeccccCCeEEEEEccCCcEE-EEeeCCCcEEEEeCCcccch
Q 014475           85 PIAANSHGTYIAGGGQ------SGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFL-ISGSEDGCVRIWSLLTVFEE  157 (424)
Q Consensus        85 ~~~~s~~~~~l~~~~~------dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l-~s~~~dg~i~iwd~~~~~~~  157 (424)
                      .+++.++|++.++...      .+.+..++... ..+..+...-...+.++|+|+++.| ++-+..+.|..|++......
T Consensus       134 d~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg-~~~~~~~~~~~~pnGia~s~dg~~lyvad~~~~~I~~~d~~~~g~~  212 (319)
T d2dg1a1         134 DMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDF-RTVTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVT  212 (319)
T ss_dssp             EEEECTTSCEEEEECCCBTTBCCEEEEEECTTS-CCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSS
T ss_pred             ceeEEeccceeecccccccccCcceeEEEeccc-ceeEEEeeccceeeeeeeccccceEEEecccCCceEEEEEcCCCce
Confidence            8999999997776432      12355555433 3333333344557889999999865 55566789999987542110


Q ss_pred             hcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeeecCc-------ceeEEEECCCC
Q 014475          158 CESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPS-------VIDAIALDPAE  230 (424)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~-------~i~~~~~~~~~  230 (424)
                      ..   ..................+++..++  ++.++....+.|.++|. .++.+..+..+.       .++++++.|..
T Consensus       213 ~~---~~~~~~~~~~~~~~~PdGl~vD~~G--~l~Va~~~~g~V~~~~p-~G~~l~~i~~P~~~~~~~~~~~~~~~~~~~  286 (319)
T d2dg1a1         213 IQ---PFGATIPYYFTGHEGPDSCCIDSDD--NLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPGT  286 (319)
T ss_dssp             EE---EEEEEEEEECCSSSEEEEEEEBTTC--CEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTTS
T ss_pred             ec---cccceeeeccCCccceeeeeEcCCC--CEEEEEcCCCEEEEECC-CCcEEEEEeCCCcCCCcCceeeeEEEeCCC
Confidence            00   0000111111222335678888877  78888888999999995 688888887443       47899999988


Q ss_pred             CEEEEEeC
Q 014475          231 HVFYAGSR  238 (424)
Q Consensus       231 ~~l~~~~~  238 (424)
                      ..+++...
T Consensus       287 ~~~~~t~~  294 (319)
T d2dg1a1         287 NQLIICSN  294 (319)
T ss_dssp             CEEEEEEE
T ss_pred             CEEEEEcC
Confidence            77776553

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.69  E-value=3.8e-07  Score=82.19  Aligned_cols=227  Identities=11%  Similarity=0.029  Sum_probs=135.0

Q ss_pred             EEECCCCCEEEEecCCCcEEEEEccCcceeeeecc---ccCCeEEEEEccCCcEEEEee---------CCCcEEEEeCCc
Q 014475           86 IAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHA---HYRAVTCLVFSEDGSFLISGS---------EDGCVRIWSLLT  153 (424)
Q Consensus        86 ~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~---~~~~i~~~~~~~~~~~l~s~~---------~dg~i~iwd~~~  153 (424)
                      ..|.+++.++.. ..+|.|.+||+.+++....+..   ....+....|+||+++++...         ..+.+.++|+.+
T Consensus        22 ~~W~~~~~~~~~-~~~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~  100 (465)
T d1xfda1          22 AKWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPH  100 (465)
T ss_dssp             CCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSS
T ss_pred             CEEeCCCcEEEE-eCCCcEEEEECCCCCEEEEEcCccccccccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccC
Confidence            358888876654 5678899999998865443332   233577888999999987763         356788999976


Q ss_pred             ccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeeecC--c------------
Q 014475          154 VFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFP--S------------  219 (424)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~--~------------  219 (424)
                      +.         ...+.........+....|+|+|  +.++... ++.|.+.+..++..++.....  .            
T Consensus       101 ~~---------~~~l~~~~~~~~~l~~~~wSPDG--~~iafv~-~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vye  168 (465)
T d1xfda1         101 GD---------PQSLDPPEVSNAKLQYAGWGPKG--QQLIFIF-ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYE  168 (465)
T ss_dssp             CC---------CEECCCTTCCSCCCSBCCBCSST--TCEEEEE-TTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHH
T ss_pred             Cc---------eeeccCccCCccccceeeeccCC--ceEEEEe-cceEEEEecCCCceEEEecccCcceeeccccchhhh
Confidence            32         22222222334456667899999  6666655 567888888776655444311  1            


Q ss_pred             -----ceeEEEECCCCCEEEEEe-CCCcEEEEEcCCCCCCCCCc-------------Cc------------eee-----e
Q 014475          220 -----VIDAIALDPAEHVFYAGS-RDGSIYIAALNAESPSTSSY-------------GM------------HII-----G  263 (424)
Q Consensus       220 -----~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~-------------~~------------~~~-----~  263 (424)
                           .-..+-|||||+.|+... .+..+..+.+........+.             ..            ...     .
T Consensus       169 ee~~~~~~a~~WSPDgk~iaf~~~D~s~V~~~~~~~~~~~~~p~~~~~~Yp~~G~~np~~~l~v~d~~~~~~~~~~~~~~  248 (465)
T d1xfda1         169 EEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPD  248 (465)
T ss_dssp             HTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCC
T ss_pred             hhhccccceEEECCCCCeEEEEEecccccceeecccccccccceeeeeeccccCCCCCceeEEEEecCCCcEEEEEeccC
Confidence                 124678999999999865 33444444432211000000             00            000     0


Q ss_pred             eecccCcCeEEEEecC-CCEEEEeC----CCCcEEEEeCCCCcEEEEEeccC-CC----eeEEEEEecCcee
Q 014475          264 SLSDHSKAVTCLAYST-GDLLISGS----EDGMVRVWDPITHNIVRMFRLAK-GP----VNNILVVRRPLYL  325 (424)
Q Consensus       264 ~~~~~~~~i~~~~~~~-~~~l~t~~----~dg~i~iwd~~~~~~~~~~~~~~-~~----v~~l~~s~~~~~l  325 (424)
                      .......-+..+.|+| +++++...    ....|.++|..+++....+.... +.    -....|+|||+.+
T Consensus       249 ~~~~~~~y~~~~~W~~d~~~~~~~~nR~q~~~~i~~~d~~tg~~~~~~~e~~~~wv~~~~~~p~~~~dg~~~  320 (465)
T d1xfda1         249 DPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKF  320 (465)
T ss_dssp             CGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSE
T ss_pred             cCccccceeeeeEEcCCCeEEEEEEccccccceEEEEcCCCCcEEEEEEEcCCceEeccCCceeEccCCCee
Confidence            0111223467789988 65554432    22358889999998766555332 22    2346889999854

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.67  E-value=3e-06  Score=70.53  Aligned_cols=227  Identities=12%  Similarity=0.109  Sum_probs=125.2

Q ss_pred             eecC--CCccccCCCCceeEEEEECCCCceeeeecCCCCeeEEEECCCCCEEEEecC-C-----CcEEEEEccCcceeee
Q 014475           46 FLAS--SQLREQPSASSGSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQ-S-----GDIYMWEVASGRLLKK  117 (424)
Q Consensus        46 ~~~~--~~~l~~~~~~~g~i~vwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-d-----g~v~iwd~~~~~~~~~  117 (424)
                      .+|+  |+.++..+.  |.|.+.|+.+++......+.+.+...+|||||+.||.... +     ..|.+++..+++....
T Consensus         6 ~sPdi~G~~v~f~~~--~dl~~~d~~~g~~~~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~l   83 (281)
T d1k32a2           6 LNPDIHGDRIIFVCC--DDLWEHDLKSGSTRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKRI   83 (281)
T ss_dssp             EEEEEETTEEEEEET--TEEEEEETTTCCEEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEEC
T ss_pred             cCCCCCCCEEEEEeC--CcEEEEECCCCCEEEEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEEe
Confidence            5788  999887765  6788889999888766777788899999999999986532 1     2477788777765433


Q ss_pred             ec------cccCCeEEEEEccCCcEEEEeeCC------CcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEE
Q 014475          118 WH------AHYRAVTCLVFSEDGSFLISGSED------GCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGY  185 (424)
Q Consensus       118 ~~------~~~~~i~~~~~~~~~~~l~s~~~d------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  185 (424)
                      ..      ..........|+|+++.++.....      ..+...+...           .....   .+...... .+.+
T Consensus        84 t~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~---~~~~~~~~-~~~~  148 (281)
T d1k32a2          84 TYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDG-----------INFVP---LNLGPATH-ILFA  148 (281)
T ss_dssp             CCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGG-----------TEEEE---CCSCSCSE-EEEE
T ss_pred             eecCCCccCccccccccccCCCCCEEEEEEccCCCccceeeeeecCCC-----------ceeEE---ecCCccce-eeec
Confidence            21      122345778999999988865332      1233444322           11111   11222222 3444


Q ss_pred             cCceeEEEEEeCCC-----------cEEEEecCCCceeeeeecCcceeEEEECCCCCEEEEEeCC--CcEEEEEcCCCCC
Q 014475          186 GGVSATIVSASEDR-----------TCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRD--GSIYIAALNAESP  252 (424)
Q Consensus       186 ~~~~~~l~~~~~d~-----------~v~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d--g~i~i~d~~~~~~  252 (424)
                      ++. ..++....+.           ..........................++++. .+.....+  ..|+++|+.....
T Consensus       149 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~d~~g~~~  226 (281)
T d1k32a2         149 DGR-RVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVGHR-IYFITDIDGFGQIYSTDLDGKDL  226 (281)
T ss_dssp             TTE-EEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEEETTE-EEEEECTTSSCEEEEEETTSCSC
T ss_pred             CCC-eEEEeeccccceeeeeccCCcceeeeeccccceeeccCCccccceeeeeccc-cceecccccccceEEEeCCCCce
Confidence            442 3333332221           1122222222222222233344444555443 23333333  3577778876541


Q ss_pred             CCCCcCceeeeeeccc-CcCeEEEEecC-CCEEEEeCCCCcEEEEeCCCCcEEE
Q 014475          253 STSSYGMHIIGSLSDH-SKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVR  304 (424)
Q Consensus       253 ~~~~~~~~~~~~~~~~-~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~~~  304 (424)
                             +   .+..+ ...+  ..|+| |+.|+.. .++.|.++|+.+++..+
T Consensus       227 -------~---~lt~~~~~~~--~~~SpDG~~I~f~-~~~~l~~~d~~~g~~~~  267 (281)
T d1k32a2         227 -------R---KHTSFTDYYP--RHLNTDGRRILFS-KGGSIYIFNPDTEKIEK  267 (281)
T ss_dssp             -------E---ECCCCCSSCE--EEEEESSSCEEEE-ETTEEEEECTTTCCEEE
T ss_pred             -------E---EeecCCCccc--ccCcCCCCEEEEE-eCCEEEEEECCCCCEEE
Confidence                   1   22211 2223  35778 7766653 46789999998876543

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.59  E-value=3.1e-05  Score=64.81  Aligned_cols=217  Identities=13%  Similarity=0.076  Sum_probs=136.3

Q ss_pred             eecCCCccccCCCCceeEEEEECCCCceeeeecCCCCeeEEEECCCCCEEEEecCCCcEEEEEccCcceeeeecc----c
Q 014475           46 FLASSQLREQPSASSGSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHA----H  121 (424)
Q Consensus        46 ~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~----~  121 (424)
                      |.+....|.-.....+.|..||.++++.... .....+.++++.++|.++++. .+ .+.++|..+++.......    .
T Consensus        25 wd~~~~~l~wvDi~~~~I~r~d~~~g~~~~~-~~~~~~~~i~~~~dg~l~va~-~~-gl~~~d~~tg~~~~l~~~~~~~~  101 (295)
T d2ghsa1          25 FDPASGTAWWFNILERELHELHLASGRKTVH-ALPFMGSALAKISDSKQLIAS-DD-GLFLRDTATGVLTLHAELESDLP  101 (295)
T ss_dssp             EETTTTEEEEEEGGGTEEEEEETTTTEEEEE-ECSSCEEEEEEEETTEEEEEE-TT-EEEEEETTTCCEEEEECSSTTCT
T ss_pred             EECCCCEEEEEECCCCEEEEEECCCCeEEEE-ECCCCcEEEEEecCCCEEEEE-eC-ccEEeecccceeeEEeeeecCCC
Confidence            6654443333332238899999888766433 345678899999998877754 44 589999988875433221    1


Q ss_pred             cCCeEEEEEccCCcEEEEeeCC----CcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeC
Q 014475          122 YRAVTCLVFSEDGSFLISGSED----GCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASE  197 (424)
Q Consensus       122 ~~~i~~~~~~~~~~~l~s~~~d----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~  197 (424)
                      ...++.+.+.|+|++.++...+    +.-.+|.+..+           . +..+...-...+.++|++++. ..+++-+.
T Consensus       102 ~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g-----------~-~~~~~~~~~~~Ng~~~s~d~~-~l~~~dt~  168 (295)
T d2ghsa1         102 GNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKG-----------K-VTKLFADISIPNSICFSPDGT-TGYFVDTK  168 (295)
T ss_dssp             TEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETT-----------E-EEEEEEEESSEEEEEECTTSC-EEEEEETT
T ss_pred             cccceeeEECCCCCEEEEeccccccccceeEeeecCC-----------c-EEEEeeccCCcceeeecCCCc-eEEEeecc
Confidence            2357889999999876664322    23345554321           1 111112223456788888873 45566667


Q ss_pred             CCcEEEEecCCC------ceeeeee---cCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeeccc
Q 014475          198 DRTCKVWSLLKG------RLLRNIV---FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDH  268 (424)
Q Consensus       198 d~~v~iwd~~~~------~~~~~~~---~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~  268 (424)
                      .+.|..+++...      +......   .......+++.++|++.++....+.|..||.+.          +.+..+.-.
T Consensus       169 ~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~dp~G----------~~~~~i~lP  238 (295)
T d2ghsa1         169 VNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTDG----------NHIARYEVP  238 (295)
T ss_dssp             TCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECTTC----------CEEEEEECS
T ss_pred             cceeeEeeecccccccccceEEEeccCcccccccceEEcCCCCEEeeeeCCCceEEecCCC----------cEeeEecCC
Confidence            888988887532      1111111   345678899999999888777888999999654          445555544


Q ss_pred             CcCeEEEEecC---CCEEEEeCC
Q 014475          269 SKAVTCLAYST---GDLLISGSE  288 (424)
Q Consensus       269 ~~~i~~~~~~~---~~~l~t~~~  288 (424)
                      ...+++++|-.   ..+++|...
T Consensus       239 ~~~~T~~~FGG~d~~~LyvTta~  261 (295)
T d2ghsa1         239 GKQTTCPAFIGPDASRLLVTSAR  261 (295)
T ss_dssp             CSBEEEEEEESTTSCEEEEEEBC
T ss_pred             CCceEEEEEeCCCCCEEEEEECC
Confidence            56789999963   445565443

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.51  E-value=1.1e-05  Score=66.94  Aligned_cols=234  Identities=11%  Similarity=-0.028  Sum_probs=120.7

Q ss_pred             EECCC--CCEEEEecCCCcEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEeeC-CC-----cEEEEeCCcccchh
Q 014475           87 AANSH--GTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSE-DG-----CVRIWSLLTVFEEC  158 (424)
Q Consensus        87 ~~s~~--~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~-dg-----~i~iwd~~~~~~~~  158 (424)
                      ..+||  |+.++-.+ +|.|.+.|+.+++.. .+..+.+.+....|+|||+.|+.... ++     .|.+++..++....
T Consensus         5 ~~sPdi~G~~v~f~~-~~dl~~~d~~~g~~~-~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~   82 (281)
T d1k32a2           5 LLNPDIHGDRIIFVC-CDDLWEHDLKSGSTR-KIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKR   82 (281)
T ss_dssp             CEEEEEETTEEEEEE-TTEEEEEETTTCCEE-EEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEE
T ss_pred             ccCCCCCCCEEEEEe-CCcEEEEECCCCCEE-EEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEE
Confidence            35788  99888754 567999999887754 45556677899999999999885532 22     36666665532110


Q ss_pred             cccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCC------CcEEEEecCCCceeeeeecCcceeEEEECCCCCE
Q 014475          159 ESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASED------RTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHV  232 (424)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d------~~v~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~  232 (424)
                      -..     ................|+|++  +.++.....      ..+...+...+.....  .........+.+.+..
T Consensus        83 lt~-----~~~~~~~~~~~~~~~~~spdg--~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~  153 (281)
T d1k32a2          83 ITY-----FSGKSTGRRMFTDVAGFDPDG--NLIISTDAMQPFSSMTCLYRVENDGINFVPL--NLGPATHILFADGRRV  153 (281)
T ss_dssp             CCC-----CCEEEETTEECSEEEEECTTC--CEEEEECTTSSSTTCCEEEEEEGGGTEEEEC--CSCSCSEEEEETTEEE
T ss_pred             eee-----cCCCccCccccccccccCCCC--CEEEEEEccCCCccceeeeeecCCCceeEEe--cCCccceeeecCCCeE
Confidence            000     000011122344567788888  666654321      2244555544433221  2222223333333333


Q ss_pred             EEEEeCCC-----------cEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecCCCEEEEeCCC--CcEEEEeCCC
Q 014475          233 FYAGSRDG-----------SIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTGDLLISGSED--GMVRVWDPIT  299 (424)
Q Consensus       233 l~~~~~dg-----------~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~t~~~d--g~i~iwd~~~  299 (424)
                      ++......           ..........         . ......+........+.+...+.....+  ..|.++|+.+
T Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g  223 (281)
T d1k32a2         154 IGRNTFELPHWKGYRGGTRGKIWIEVNSG---------A-FKKIVDMSTHVSSPVIVGHRIYFITDIDGFGQIYSTDLDG  223 (281)
T ss_dssp             EEESCSCCTTSTTCCSTTCCEEEEEEETT---------E-EEEEECCSSCCEEEEEETTEEEEEECTTSSCEEEEEETTS
T ss_pred             EEeeccccceeeeeccCCcceeeeecccc---------c-eeeccCCccccceeeeeccccceecccccccceEEEeCCC
Confidence            33222111           0111111110         1 1111222333344444443344444333  3577778776


Q ss_pred             CcEEEEEeccCCCeeEEEEEecCceeeeccCCCceeeccCCCCCC
Q 014475          300 HNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGSQL  344 (424)
Q Consensus       300 ~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~d~~i~iw~~~~~~~  344 (424)
                      ++.. .+..+. ......|+|||+.|+. ..++.|.++++.+++.
T Consensus       224 ~~~~-~lt~~~-~~~~~~~SpDG~~I~f-~~~~~l~~~d~~~g~~  265 (281)
T d1k32a2         224 KDLR-KHTSFT-DYYPRHLNTDGRRILF-SKGGSIYIFNPDTEKI  265 (281)
T ss_dssp             CSCE-ECCCCC-SSCEEEEEESSSCEEE-EETTEEEEECTTTCCE
T ss_pred             CceE-EeecCC-CcccccCcCCCCEEEE-EeCCEEEEEECCCCCE
Confidence            6543 333222 2233479999999876 4567899999887764

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.37  E-value=0.00048  Score=58.83  Aligned_cols=227  Identities=10%  Similarity=0.018  Sum_probs=129.5

Q ss_pred             EEeecCCCCCceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCC-----------------CceeEEEE
Q 014475            4 LIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSA-----------------SSGSILYW   66 (424)
Q Consensus         4 ~lat~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~-----------------~~g~i~vw   66 (424)
                      +++.-. .+.+|-+-|+.+.+..+.+.....  .....+...-.|...+++..+.                 -.+.+.+.
T Consensus       102 lFVNDk-an~RVAvIdl~~fkt~kIi~iPn~--~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~~~~t~I  178 (459)
T d1fwxa2         102 LFMNDK-ANTRVARVRCDVMKCDAILEIPNA--KGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAV  178 (459)
T ss_dssp             EEEEET-TTTEEEEEETTTTEEEEEEECSSC--CSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-EEEEEEEE
T ss_pred             EEEEcC-CCceEEEEECcceeeeEEEecCCC--CCCceeecccCCCeEEEEccCccccccCCCCccccchhhcceEEEEE
Confidence            455555 889999999999988664432211  1222222001223333333222                 11567789


Q ss_pred             ECCCCceeeeecCCCCeeEEEECCCCCEEEEecCCC---------------cEEEEEc----------------------
Q 014475           67 SWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSG---------------DIYMWEV----------------------  109 (424)
Q Consensus        67 d~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg---------------~v~iwd~----------------------  109 (424)
                      |.++.+...+..-......++++++|+++++.+.+.               .+.+++.                      
T Consensus       179 D~~tm~V~~QV~V~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk~~eingV~VVD  258 (459)
T d1fwxa2         179 DADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVD  258 (459)
T ss_dssp             ETTTTEEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEE
T ss_pred             ecCCceEEEEeeeCCChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCCcEEeCCceeec
Confidence            999888877766667788999999999999876431               1333333                      


Q ss_pred             -cCc---ceeeeeccccCCeEEEEEccCCcEEEEeeC-CCcEEEEeCCcccchhccccc-ccceEEeecCCcCceeEEEE
Q 014475          110 -ASG---RLLKKWHAHYRAVTCLVFSEDGSFLISGSE-DGCVRIWSLLTVFEECESQRA-SHLYLHSFTGHTLRITDIVI  183 (424)
Q Consensus       110 -~~~---~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~  183 (424)
                       ++.   ..+..+.. ......+.++|||+++++++. +.++.++|+++.......... ......... ....-...+|
T Consensus       259 ~~~~~~~~v~~yIPV-pKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e~e-lglgPLht~f  336 (459)
T d1fwxa2         259 GRKEASSLFTRYIPI-ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE-LGLGPLHTAF  336 (459)
T ss_dssp             CSGG--CSSEEEEEE-ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEECCB-CCSCEEEEEE
T ss_pred             ccccCCcceeEEEec-CCCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEEeecc-cCcCcccccc
Confidence             221   11122222 233567899999999876654 789999999765433221111 111111111 1222233445


Q ss_pred             EEcCceeEEEEEeCCCcEEEEecCCC----------ceeeeeecCcceeEE------EECCCCCEEEEEe
Q 014475          184 GYGGVSATIVSASEDRTCKVWSLLKG----------RLLRNIVFPSVIDAI------ALDPAEHVFYAGS  237 (424)
Q Consensus       184 ~~~~~~~~l~~~~~d~~v~iwd~~~~----------~~~~~~~~~~~i~~~------~~~~~~~~l~~~~  237 (424)
                      ...+  +...+.--|..|.-|++...          ..+..+...-.+-.+      ...|+|++|++..
T Consensus       337 d~~g--~aytslfids~v~kw~~~~~~~~~~~~~~~~v~~k~~v~y~~gh~~~~~g~t~~~dgk~l~~~n  404 (459)
T d1fwxa2         337 DGRG--NAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLS  404 (459)
T ss_dssp             CTTS--EEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEE
T ss_pred             CCCc--eEEEEeeccceEEEEecchhhhhhccccCCcceeccccccCCCCCccCcCCcCCCCCCEEEEec
Confidence            4444  66666778999999998532          334444422223223      2367899999876

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.33  E-value=0.00044  Score=55.88  Aligned_cols=256  Identities=11%  Similarity=0.105  Sum_probs=155.4

Q ss_pred             eeEEEEECCCCceeeeecCCCCeeEEEECCCCCEEEEecCCCcEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEe
Q 014475           61 GSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISG  140 (424)
Q Consensus        61 g~i~vwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~  140 (424)
                      ..|.+-|+..+....+..-.  --+.-.+|..+.||.-+ ..++.++|+++.+.++.+.- ..+|.-=.|-.+. .|+..
T Consensus        45 ~~VvIidl~n~~~~~Rrpi~--AdsAIMhP~~~IiALra-g~~LQiFnletK~klks~~~-~e~VvfWkWis~~-~L~lV  119 (327)
T d1utca2          45 AQVVIIDMNDPSNPIRRPIS--ADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTM-TDDVTFWKWISLN-TVALV  119 (327)
T ss_dssp             EEEEEEETTSTTSCEEEECC--CSEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEEC-SSCCCEEEESSSS-EEEEE
T ss_pred             ceEEEEECCCCCcceecccc--hhhhhcCCCCcEEEEec-CCeEEEEehhHhhhhceEEc-CCCcEEEEecCCC-EEEEE
Confidence            68888888766544333221  23445678888888765 45899999999998888764 4567677776544 44444


Q ss_pred             eCCCcEEEEeCCcccchhcccccccceEEeecCCc----CceeEEEEEEcCceeEEEEEe-------CCCcEEEEecCCC
Q 014475          141 SEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHT----LRITDIVIGYGGVSATIVSAS-------EDRTCKVWSLLKG  209 (424)
Q Consensus       141 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~----~~i~~~~~~~~~~~~~l~~~~-------~d~~v~iwd~~~~  209 (424)
                      + +..|+-|+++..          ..+.+.+..|.    ..|..-..+++.  ++++..+       -.|.+.+|..+.+
T Consensus       120 T-~taVYHW~~~g~----------s~P~k~fdR~~~L~~~QIInY~~d~~~--kW~~l~GI~~~~~~i~G~mQLYS~er~  186 (327)
T d1utca2         120 T-DNAVYHWSMEGE----------SQPVKMFDRHSSLAGCQIINYRTDAKQ--KWLLLTGISAQQNRVVGAMQLYSVDRK  186 (327)
T ss_dssp             C-SSEEEEEESSSS----------CCCEEEEECCGGGTTCEEEEEEECTTS--CEEEEEEEEEETTEEEEEEEEEETTTT
T ss_pred             c-CCceEEEcccCC----------CCchhhhhhcccccCceEEEEEECCCC--CEEEEEeEecCCCceeEEEEEEEeccC
Confidence            4 347999999542          12344444443    344444444444  6655433       1367888987655


Q ss_pred             ceeeeee-cCcceeEEEECC--CC-CEEEEE---eCCCcEEEEEcCCCCCCCCCcCceeeeeec---ccCcCeEEEEecC
Q 014475          210 RLLRNIV-FPSVIDAIALDP--AE-HVFYAG---SRDGSIYIAALNAESPSTSSYGMHIIGSLS---DHSKAVTCLAYST  279 (424)
Q Consensus       210 ~~~~~~~-~~~~i~~~~~~~--~~-~~l~~~---~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~---~~~~~i~~~~~~~  279 (424)
                      .. +.+. |.+....+.+.-  .. ..++.+   ...+++++.++.........+..+.+..+.   .-.+-..++..++
T Consensus       187 ~s-Q~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~  265 (327)
T d1utca2         187 VS-QPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISE  265 (327)
T ss_dssp             EE-EEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEET
T ss_pred             cC-ccccceeeeeEEEEcCCCCCCceEEEEEECCCCCcEEEEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEeec
Confidence            33 2222 322222222211  11 122222   234689999998754322332223222222   2245567888888


Q ss_pred             -CCEEEEeCCCCcEEEEeCCCCcEEEEEeccCCCeeEEEEEecCceeeeccCCCcee
Q 014475          280 -GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHT  335 (424)
Q Consensus       280 -~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~d~~i~  335 (424)
                       ...+..-+.-|.|.+||+.++.++..-+-...+|...+-..+..-+++...+|.|.
T Consensus       266 kygiiyviTK~G~i~lyDleTgt~i~~nRIs~~~iF~~a~~~~~~Gi~~VNr~GqVl  322 (327)
T d1utca2         266 KHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVL  322 (327)
T ss_dssp             TTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTTTEEEEEETTSEEE
T ss_pred             cCCEEEEEecCcEEEEEEcccccEEEEeecCCCceEEeccCCCCceEEEECCCCeEE
Confidence             88888888999999999999999998887777777666665555555555666553

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=98.32  E-value=0.00038  Score=63.67  Aligned_cols=304  Identities=13%  Similarity=0.135  Sum_probs=156.1

Q ss_pred             EeecCCCCCceEEEeCCCCceEEEeeCCCCCCCceEEe----cceeecCCCccccCCCCceeEEEEECCCCceeeeecCC
Q 014475            5 IASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACV----GQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSLPA   80 (424)
Q Consensus         5 lat~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~----~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~~~~~   80 (424)
                      |..++ .++.|.-.|.++|+.+-++.............    .......+..++.+..+ +.|.-.|..+++........
T Consensus        69 vyv~t-~~~~v~AlDa~tG~~lW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-g~l~Alda~tG~~~w~~~~~  146 (560)
T d1kv9a2          69 IYTSM-SWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALWGDKVYVGTLD-GRLIALDAKTGKAIWSQQTT  146 (560)
T ss_dssp             EEEEE-GGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEEBTEEEEECTT-SEEEEEETTTCCEEEEEECS
T ss_pred             EEEEC-CCCeEEEEeCCCCCEEEEECCCCCccccccccccccccCcceeCCeEEEEeCC-CEEEEEECCCCcEEeccCcc
Confidence            34445 56889999999999997764322111000000    00011123345555555 88888998888877655432


Q ss_pred             CC--eeEEEECC--CCCEEEEecC------CCcEEEEEccCcceeeeeccc-----------------------------
Q 014475           81 EP--IKPIAANS--HGTYIAGGGQ------SGDIYMWEVASGRLLKKWHAH-----------------------------  121 (424)
Q Consensus        81 ~~--v~~~~~s~--~~~~l~~~~~------dg~v~iwd~~~~~~~~~~~~~-----------------------------  121 (424)
                      .+  -..+.-.|  ....++.+..      .|.|.-+|.++|+.+-.+..-                             
T Consensus       147 ~~~~~~~~~~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  226 (560)
T d1kv9a2         147 DPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLG  226 (560)
T ss_dssp             CTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHC
T ss_pred             CcccceeeeeeeeeecCcccccccceeccccceEEEEECCCceEEeeeeeccccccCCcccccccccccccccccccccc
Confidence            21  11111122  1233444432      367999999999988766310                             


Q ss_pred             -cCCe-EEEEEccCCcEEEEeeC-------------------CCcEEEEeCCcccchhcccccccceEEeecCCcC----
Q 014475          122 -YRAV-TCLVFSEDGSFLISGSE-------------------DGCVRIWSLLTVFEECESQRASHLYLHSFTGHTL----  176 (424)
Q Consensus       122 -~~~i-~~~~~~~~~~~l~s~~~-------------------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~----  176 (424)
                       ...+ ..+++.+...++..+..                   ...|.-.|++++.         .........|..    
T Consensus       227 ~G~~~W~~~s~D~~~~l~y~~tgn~~~~~~~~~~~~~g~n~~s~sivAld~~tG~---------~~W~~Q~~~~D~wd~d  297 (560)
T d1kv9a2         227 GGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGK---------LAWHYQVTPGDSWDFT  297 (560)
T ss_dssp             EECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCC---------EEEEEESSTTCCSCCC
T ss_pred             CCCCcccccccccccCeeeecCCCCcccccccccccCCccccceeeEEecCCccc---------eeEEEecccccccccc
Confidence             1111 12445555554443321                   1234444554422         111111111211    


Q ss_pred             ---ceeEEEEEEcCc-eeEEEEEeCCCcEEEEecCCCceeeeeecCcc--------------------------------
Q 014475          177 ---RITDIVIGYGGV-SATIVSASEDRTCKVWSLLKGRLLRNIVFPSV--------------------------------  220 (424)
Q Consensus       177 ---~i~~~~~~~~~~-~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~--------------------------------  220 (424)
                         ...-..+..++. ...++.++.+|.+.++|..+++++........                                
T Consensus       298 ~~~~~~l~~~~~~g~~~~~v~~~~k~G~~~~lDr~tG~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~p~~  377 (560)
T d1kv9a2         298 ATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSP  377 (560)
T ss_dssp             CCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCT
T ss_pred             ccceeeeeeeecCCceeeeeeecCccceEEEEecCCCcccccccccccccccccChhhccccccccccccccceeeeecc
Confidence               111112222332 24677788999999999999998765431110                                


Q ss_pred             -----eeEEEECCCCCEEEEEeCCC------------------------------------cEEEEEcCCCCCCCCCcCc
Q 014475          221 -----IDAIALDPAEHVFYAGSRDG------------------------------------SIYIAALNAESPSTSSYGM  259 (424)
Q Consensus       221 -----i~~~~~~~~~~~l~~~~~dg------------------------------------~i~i~d~~~~~~~~~~~~~  259 (424)
                           -...+++|+...+++...+.                                    .+.-+|+.+++.       
T Consensus       378 ~Gg~~w~~~a~dp~~~~~yvp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~G~l~A~D~~tGk~-------  450 (560)
T d1kv9a2         378 FGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKA-------  450 (560)
T ss_dssp             TCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEE-------
T ss_pred             ccccccccccccCCCCeeecccccccceeeccccccccccccccccCcccccCCCCcccccceEEEeCCCCeE-------
Confidence                 01345566666666554332                                    233444444321       


Q ss_pred             eeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCCCcEEEEEeccCCCe-eEEEEEecCc-eeeecc
Q 014475          260 HIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPV-NNILVVRRPL-YLNLGS  329 (424)
Q Consensus       260 ~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~v-~~l~~s~~~~-~l~~~~  329 (424)
                        +-... ...+...-.+.- +.++++|+.||.++-+|.++|+.+-+++...+.. .=+.+..+|+ ||++.+
T Consensus       451 --~W~~~-~~~~~~gg~l~TagglVF~G~~dg~l~A~Da~tGe~LW~~~l~~~~~~~P~ty~~dGkqyv~v~a  520 (560)
T d1kv9a2         451 --AWKVP-YPTHWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAGRQYVAIMA  520 (560)
T ss_dssp             --EEEEE-ESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEE
T ss_pred             --eeecc-CCCCCCCceeEECCCEEEEECCCCcEEEEECCCCcEeEEEECCCCccccCEEEEECCEEEEEEEe
Confidence              11110 111111111122 6788889999999999999999999988543311 1245667884 665433

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=98.22  E-value=0.0015  Score=59.85  Aligned_cols=102  Identities=14%  Similarity=0.144  Sum_probs=60.7

Q ss_pred             CCCceEEEeC-CCCceEEEeeCCCCC-----------CCceEEecceeecC----CCccccCCCCceeEEEEECCCCcee
Q 014475           11 ADTGIGCWDL-ESGAEQLRYKSCASP-----------PHGLACVGQRFLAS----SQLREQPSASSGSILYWSWSKPQVE   74 (424)
Q Consensus        11 ~dg~i~vwd~-~~~~~~~~~~~~~~~-----------~~~v~~~~~~~~~~----~~~l~~~~~~~g~i~vwd~~~~~~~   74 (424)
                      .++.+...|. ++|+.+-++......           .+++.     +.++    ..+++.+..+ +.|.-.|.++++..
T Consensus        71 ~~~~v~a~d~~~tG~~~W~~~~~~~~~~~~~~~~~~~~RGv~-----~~~~~~~~~~~v~~~t~d-g~l~Alda~tG~~~  144 (596)
T d1w6sa_          71 FPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLA-----YWPGDGKTPALILKTQLD-GNVAALNAETGETV  144 (596)
T ss_dssp             TTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCE-----EECCCSSSCCEEEEECTT-SEEEEEETTTCCEE
T ss_pred             CCCcEEEEeCCCCCCEEEEecCCCCcccccccccccccceeE-----EecCCCCCceEEEEEeCC-CCeEeeccccCcee
Confidence            4577888886 589998776532211           12222     3322    2346666666 89999999999887


Q ss_pred             eeecCCC--CeeEEEECC--CCCEEEEecC------CCcEEEEEccCcceeeee
Q 014475           75 VKSLPAE--PIKPIAANS--HGTYIAGGGQ------SGDIYMWEVASGRLLKKW  118 (424)
Q Consensus        75 ~~~~~~~--~v~~~~~s~--~~~~l~~~~~------dg~v~iwd~~~~~~~~~~  118 (424)
                      ......+  .-..+.-.|  -+..++++..      .|.|+-+|.++|+.+-++
T Consensus       145 w~~~~~d~~~~~~~t~~P~v~~~~vivg~~~~e~~~~G~v~A~Da~TG~~~W~~  198 (596)
T d1w6sa_         145 WKVENSDIKVGSTLTIAPYVVKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRA  198 (596)
T ss_dssp             EEEECCCGGGTCBCCSCCEEETTEEEECCBCGGGTCCCEEEEEETTTCCEEEEE
T ss_pred             ccccccccccccccccCCcEECCeEEEeeccccccccCceEEEECCCCcEEEEe
Confidence            6653211  101111122  1344555543      488999999999988765

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.22  E-value=0.00052  Score=58.61  Aligned_cols=243  Identities=10%  Similarity=0.015  Sum_probs=149.8

Q ss_pred             EEEeecCCCCCceEEEeCCCCceEEEeeCCCCCC------------------------------------CceEEeccee
Q 014475            3 LLIASSSVADTGIGCWDLESGAEQLRYKSCASPP------------------------------------HGLACVGQRF   46 (424)
Q Consensus         3 ~~lat~~~~dg~i~vwd~~~~~~~~~~~~~~~~~------------------------------------~~v~~~~~~~   46 (424)
                      ..+.||+ ..|.|+|+-+.+++.++.+.-.....                                    .........+
T Consensus        14 y~f~SgG-~sG~v~v~G~PSmR~l~~ipvF~~~~~~G~G~~~es~~il~~~~~~~t~~~l~~~g~~~~~~GD~HHP~~S~   92 (459)
T d1fwxa2          14 YGFWSSG-QSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHDNGDLHHVHMSF   92 (459)
T ss_dssp             EEEECCB-TTCEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCC--------------CCCCCBCCEEEEE
T ss_pred             EEEeeCC-ccceEEEEecCCcceEEEeeeecCCCCcccCcchhHHHHhhcccChhhhhhhhccCcccccCCCcCCCcccc
Confidence            3467788 99999999999999998775332100                                    0011111012


Q ss_pred             e---cCCCccccCCCCceeEEEEECCCCceee--eecCCCCeeEEEECC--CCCEEEEecCCC-----------------
Q 014475           47 L---ASSQLREQPSASSGSILYWSWSKPQVEV--KSLPAEPIKPIAANS--HGTYIAGGGQSG-----------------  102 (424)
Q Consensus        47 ~---~~~~~l~~~~~~~g~i~vwd~~~~~~~~--~~~~~~~v~~~~~s~--~~~~l~~~~~dg-----------------  102 (424)
                      .   +||+++.+....++.|-+-|++..+...  .......+..++..+  +-.|++.++.+.                 
T Consensus        93 TdGtyDGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~  172 (459)
T d1fwxa2          93 TEGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYV  172 (459)
T ss_dssp             ETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-EE
T ss_pred             cCCccceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccchhhcc
Confidence            2   3799999988777999999999887643  334456777777654  556777766532                 


Q ss_pred             -cEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEeeCCC---------------cEEEEeCCcccchhc-------
Q 014475          103 -DIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDG---------------CVRIWSLLTVFEECE-------  159 (424)
Q Consensus       103 -~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg---------------~i~iwd~~~~~~~~~-------  159 (424)
                       .+.++|.++.+....... .+....+.++++|+++++.+.+.               .+.++++........       
T Consensus       173 ~~~t~ID~~tm~V~~QV~V-~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk~~ei  251 (459)
T d1fwxa2         173 NVFTAVDADKWEVAWQVLV-SGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQEL  251 (459)
T ss_dssp             EEEEEEETTTTEEEEEEEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEE
T ss_pred             eEEEEEecCCceEEEEeee-CCChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCCcEEe
Confidence             367788888877766653 33566799999999988876432               244454422111000       


Q ss_pred             -------cc-ccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCce------------eeeeecCc
Q 014475          160 -------SQ-RASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRL------------LRNIVFPS  219 (424)
Q Consensus       160 -------~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~------------~~~~~~~~  219 (424)
                             .. ......+..+.. ......+.++|++. ..++++..+.++.++|+++-..            .......-
T Consensus       252 ngV~VVD~~~~~~~~v~~yIPV-pKsPHGV~vSPDGK-yi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e~elgl  329 (459)
T d1fwxa2         252 NGVKVVDGRKEASSLFTRYIPI-ANNPHGCNMAPDKK-HLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGL  329 (459)
T ss_dssp             TTEEEEECSGG--CSSEEEEEE-ESSCCCEEECTTSS-EEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEECCBCCS
T ss_pred             CCceeecccccCCcceeEEEec-CCCCCceEECCCCC-EEEEeCCcCCcEEEEEehhhhhhhcccCCccccEEeecccCc
Confidence                   00 001111111111 12245678899984 4455566789999999864211            11222344


Q ss_pred             ceeEEEECCCCCEEEEEeCCCcEEEEEcCC
Q 014475          220 VIDAIALDPAEHVFYAGSRDGSIYIAALNA  249 (424)
Q Consensus       220 ~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~  249 (424)
                      .....+|+..|....+-.-|..|.-|++..
T Consensus       330 gPLht~fd~~g~aytslfids~v~kw~~~~  359 (459)
T d1fwxa2         330 GPLHTAFDGRGNAYTSLFLDSQVVKWNIED  359 (459)
T ss_dssp             CEEEEEECTTSEEEEEETTTTEEEEEEHHH
T ss_pred             CccccccCCCceEEEEeeccceEEEEecch
Confidence            556778988886666667899999999854

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.20  E-value=0.00095  Score=54.45  Aligned_cols=236  Identities=11%  Similarity=-0.036  Sum_probs=141.4

Q ss_pred             eeEEEEECCCCceeeeecCCCCeeEEEECCCCCEEEEe-cCCCcEEEEEccCcc----eeeeeccccCCeEEEEEccCCc
Q 014475           61 GSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGG-GQSGDIYMWEVASGR----LLKKWHAHYRAVTCLVFSEDGS  135 (424)
Q Consensus        61 g~i~vwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg~v~iwd~~~~~----~~~~~~~~~~~i~~~~~~~~~~  135 (424)
                      ..|+-.++++.+..........+.+++|.+..+.+.-. ...+.|.-.++....    ....+......+..+++.+.+.
T Consensus        10 ~~I~~~~l~~~~~~~~~~~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~glAvD~~~~   89 (266)
T d1ijqa1          10 HEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHS   89 (266)
T ss_dssp             SSEEEEETTSCCCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTT
T ss_pred             CeEEEEECCCCcceeeeCCCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCcceEEEeeccc
Confidence            46888888877665555556678899999877766654 345667666654321    1222233345577888876444


Q ss_pred             -EEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEe--CCCcEEEEecCCCcee
Q 014475          136 -FLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSAS--EDRTCKVWSLLKGRLL  212 (424)
Q Consensus       136 -~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~--~d~~v~iwd~~~~~~~  212 (424)
                       ...+-...+.|.+.++...           ...............+++.|..  .++....  ..+.|.-.++......
T Consensus        90 ~lY~~d~~~~~I~v~~~~g~-----------~~~~~~~~~~~~P~~l~vd~~~--g~ly~~~~~~~~~I~r~~~dGs~~~  156 (266)
T d1ijqa1          90 NIYWTDSVLGTVSVADTKGV-----------KRKTLFRENGSKPRAIVVDPVH--GFMYWTDWGTPAKIKKGGLNGVDIY  156 (266)
T ss_dssp             EEEEEETTTTEEEEEETTSS-----------SEEEEEECTTCCEEEEEEETTT--TEEEEEECSSSCEEEEEETTSCCEE
T ss_pred             eEEEEecCCCEEEeEecCCc-----------eEEEEEcCCCCCcceEEEEccc--CeEEEeccCCCcceeEeccCCCcee
Confidence             4455456678999998541           1122233344566788888765  3444333  3445766776544333


Q ss_pred             eeee-cCcceeEEEECCCCCEEEEE-eCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecCCCEEEEeCCCC
Q 014475          213 RNIV-FPSVIDAIALDPAEHVFYAG-SRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTGDLLISGSEDG  290 (424)
Q Consensus       213 ~~~~-~~~~i~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~t~~~dg  290 (424)
                      .... .-.....+++++.++.|+.+ ...+.|...+++....       ..+............+++..+.++.+-..++
T Consensus       157 ~l~~~~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~~-------~~~~~~~~~~~~p~~lav~~~~ly~td~~~~  229 (266)
T d1ijqa1         157 SLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR-------KTILEDEKRLAHPFSLAVFEDKVFWTDIINE  229 (266)
T ss_dssp             EEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-------EEEEECTTTTSSEEEEEEETTEEEEEETTTT
T ss_pred             cccccccceeeEEEeeccccEEEEecCCcCEEEEEECCCCCE-------EEEEeCCCcccccEEEEEECCEEEEEECCCC
Confidence            3332 23557889999877766655 5567899889876431       2222222333446677776555666656778


Q ss_pred             cEEEEeCCCCcEEEEEeccCCCeeEE
Q 014475          291 MVRVWDPITHNIVRMFRLAKGPVNNI  316 (424)
Q Consensus       291 ~i~iwd~~~~~~~~~~~~~~~~v~~l  316 (424)
                      .|...+..+++....+.........+
T Consensus       230 ~I~~~~~~~g~~~~~~~~~~~~p~~i  255 (266)
T d1ijqa1         230 AIFSANRLTGSDVNLLAENLLSPEDM  255 (266)
T ss_dssp             EEEEEETTTCCCCEEEECSCSCCCCE
T ss_pred             eEEEEECCCCcceEEEEcCCCCceEE
Confidence            88888888887766665444433333

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.17  E-value=0.0011  Score=53.97  Aligned_cols=238  Identities=9%  Similarity=-0.027  Sum_probs=142.3

Q ss_pred             eeEEEEECCCCcee------eeecCCCCeeEEEECCCCCEEEEe-cCCCcEEEEEccCcceeeeeccccCCeEEEEEccC
Q 014475           61 GSILYWSWSKPQVE------VKSLPAEPIKPIAANSHGTYIAGG-GQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSED  133 (424)
Q Consensus        61 g~i~vwd~~~~~~~------~~~~~~~~v~~~~~s~~~~~l~~~-~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~  133 (424)
                      +.|+-.+++.....      ....+...+.+++|.+..+.+.-. ..++.|+..++..+.....+......+..+++..-
T Consensus        10 ~~I~~~~ld~~~~~~~~~~~~~~~~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~~~p~~iAvD~~   89 (263)
T d1npea_          10 GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHL   89 (263)
T ss_dssp             EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETT
T ss_pred             CeEEEEECCCccccccccccccccCCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEeccccccEEEEecc
Confidence            56666666543321      122234457889998876666554 45677888888766554444444467889999864


Q ss_pred             CcEE-EEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEe-CCCc--EEEEecCCC
Q 014475          134 GSFL-ISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSAS-EDRT--CKVWSLLKG  209 (424)
Q Consensus       134 ~~~l-~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~-~d~~--v~iwd~~~~  209 (424)
                      +..| .+-...+.|.+.++....         .  .............+++.|..  .+++... ..+.  |.--++...
T Consensus        90 ~~~lY~~d~~~~~I~~~~~dg~~---------~--~~l~~~~l~~p~~l~vdp~~--g~ly~t~~~~~~~~I~r~~~dG~  156 (263)
T d1npea_          90 GRTIFWTDSQLDRIEVAKMDGTQ---------R--RVLFDTGLVNPRGIVTDPVR--GNLYWTDWNRDNPKIETSHMDGT  156 (263)
T ss_dssp             TTEEEEEETTTTEEEEEETTSCS---------C--EEEECSSCSSEEEEEEETTT--TEEEEEECCSSSCEEEEEETTSC
T ss_pred             CCeEEEeccCCCEEEEEecCCce---------E--EEEecccccCCcEEEEeccc--CcEEEeecCCCCcEEEEecCCCC
Confidence            4444 455567789999985411         1  11122233567888998876  4444332 2223  444455443


Q ss_pred             ceeeeee-cCcceeEEEECCCCCEEEEE-eCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecCCCEEEEeC
Q 014475          210 RLLRNIV-FPSVIDAIALDPAEHVFYAG-SRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTGDLLISGS  287 (424)
Q Consensus       210 ~~~~~~~-~~~~i~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~t~~  287 (424)
                      ....... .-.....+++++.++.|+.. ...+.|...+++...         ......+- ....++++..+.++.+-.
T Consensus       157 ~~~~i~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g~~---------~~~v~~~~-~~P~~lav~~~~lYwtd~  226 (263)
T d1npea_         157 NRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPG---------RRKVLEGL-QYPFAVTSYGKNLYYTDW  226 (263)
T ss_dssp             CCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEE---------EEEEEECC-CSEEEEEEETTEEEEEET
T ss_pred             CceeeeeecccccceEEEeecCcEEEEEeCCCCEEEEEECCCCC---------eEEEECCC-CCcEEEEEECCEEEEEEC
Confidence            3222222 22456789999877777655 466789999987643         11122222 234577776555666666


Q ss_pred             CCCcEEEEeCCCCcEEEEEeccC-CCeeEEEEEec
Q 014475          288 EDGMVRVWDPITHNIVRMFRLAK-GPVNNILVVRR  321 (424)
Q Consensus       288 ~dg~i~iwd~~~~~~~~~~~~~~-~~v~~l~~s~~  321 (424)
                      ..+.|...|..+++.+..+..+. .....+...++
T Consensus       227 ~~~~I~~~~~~~g~~~~~~~~~~~~~~~gi~v~~~  261 (263)
T d1npea_         227 KTNSVIAMDLAISKEMDTFHPHKQTRLYGITIALS  261 (263)
T ss_dssp             TTTEEEEEETTTTEEEEEECCSSCCCCCCEEEECS
T ss_pred             CCCEEEEEECCCCccceEECCCCCCCcceEEEeCC
Confidence            77889999999998887765332 34456665543

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=98.16  E-value=0.00036  Score=60.54  Aligned_cols=137  Identities=12%  Similarity=0.041  Sum_probs=81.8

Q ss_pred             eEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCceeeeec--CCCCeeEEEECCCC
Q 014475           15 IGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSL--PAEPIKPIAANSHG   92 (424)
Q Consensus        15 i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~~~--~~~~v~~~~~s~~~   92 (424)
                      +.+||..+++-.........+........  +.++++.++.++.+...+.+||..+........  ....-...+..+||
T Consensus        54 ~~~yd~~t~~w~~~~~~~~~~~~~~~~~~--~~~~g~i~v~Gg~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~dG  131 (387)
T d1k3ia3          54 TSSWDPSTGIVSDRTVTVTKHDMFCPGIS--MDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDG  131 (387)
T ss_dssp             EEEECTTTCCBCCCEEEECSCCCSSCEEE--ECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTS
T ss_pred             EEEEECCCCcEeecCCCCCCcccceeEEE--EecCCcEEEeecCCCcceeEecCccCcccccccccccccccceeeecCC
Confidence            67899988765432111111211122333  789999999998776899999988765443221  12233467778899


Q ss_pred             CEEEEecCC------CcEEEEEccCcceeee--ec-------ccc-----CCeEEEEEccCCcEEEEeeCCCcEEEEeCC
Q 014475           93 TYIAGGGQS------GDIYMWEVASGRLLKK--WH-------AHY-----RAVTCLVFSEDGSFLISGSEDGCVRIWSLL  152 (424)
Q Consensus        93 ~~l~~~~~d------g~v~iwd~~~~~~~~~--~~-------~~~-----~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~  152 (424)
                      ++++.|+.+      ..+.+||..+.+-...  ..       .+.     ..-..+...++++.++.+..++.+.+++..
T Consensus       132 ~v~v~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~g~~~~~~~~~~~~  211 (387)
T d1k3ia3         132 RVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSG  211 (387)
T ss_dssp             CEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECST
T ss_pred             ceeeeccccccccccceeeeecCCCCceeecCCCcccccccccccceeeccceeEEEEeCCCCEEEecCcCCcEEecCcc
Confidence            999998753      3589999887642211  00       000     011112334567777777777777777775


Q ss_pred             c
Q 014475          153 T  153 (424)
Q Consensus       153 ~  153 (424)
                      +
T Consensus       212 ~  212 (387)
T d1k3ia3         212 S  212 (387)
T ss_dssp             T
T ss_pred             c
Confidence            5

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=98.14  E-value=0.0013  Score=60.10  Aligned_cols=48  Identities=17%  Similarity=0.257  Sum_probs=36.0

Q ss_pred             CCEEEEeCCCCcEEEEeCCCCcEEEEEeccCC-CeeEEEEEecCc-eeee
Q 014475          280 GDLLISGSEDGMVRVWDPITHNIVRMFRLAKG-PVNNILVVRRPL-YLNL  327 (424)
Q Consensus       280 ~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~-~v~~l~~s~~~~-~l~~  327 (424)
                      +.++++|+.||.++-+|.++|+.+-+++.... .-.-+.+..||+ |+++
T Consensus       475 gglVf~G~~dg~l~A~Da~tGe~lW~~~l~~~~~a~P~ty~~dGkqYi~v  524 (571)
T d2ad6a1         475 GGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKGKQYIGS  524 (571)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEE
T ss_pred             CCEEEEECCCCeEEEEECCCCcEEEEEECCCCceecceEEEECCEEEEEE
Confidence            67888899999999999999999998875432 112256667885 6644

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=98.11  E-value=0.0032  Score=57.48  Aligned_cols=111  Identities=12%  Similarity=0.119  Sum_probs=61.5

Q ss_pred             EEeecCCCCCceEEEeCCCCceEEEeeCCCCCCCc------eEEecceeecCCCccccCCCCceeEEEEECCCCceeeee
Q 014475            4 LIASSSVADTGIGCWDLESGAEQLRYKSCASPPHG------LACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKS   77 (424)
Q Consensus         4 ~lat~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~------v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~~   77 (424)
                      .|..++ .++.|.-.|.++|+.+-+++........      ...-...+ .++ .+..+..+ +.+.-.|..+++.....
T Consensus        79 ~vyv~t-~~~~v~AlDa~TG~~~W~~~~~~~~~~~~~~~~~~~~~g~~~-~~~-~v~~~t~~-g~l~alda~tG~~~W~~  154 (573)
T d1kb0a2          79 IMYVSA-SWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVAL-WKG-KVYVGAWD-GRLIALDAATGKEVWHQ  154 (573)
T ss_dssp             EEEEEC-GGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEE-ETT-EEEEECTT-SEEEEEETTTCCEEEEE
T ss_pred             EEEEEC-CCCeEEEEeCCCCCeEEEeCCCCCcccccccccccccccceE-ECC-cEEEEecc-cceeeeccccccceecc
Confidence            345556 6799999999999999776532211100      00000001 122 33444444 78888898888877554


Q ss_pred             cC---CCCeeEEEECC--CCCEEEEecC------CCcEEEEEccCcceeeee
Q 014475           78 LP---AEPIKPIAANS--HGTYIAGGGQ------SGDIYMWEVASGRLLKKW  118 (424)
Q Consensus        78 ~~---~~~v~~~~~s~--~~~~l~~~~~------dg~v~iwd~~~~~~~~~~  118 (424)
                      ..   ...-..+.-.|  -+..+++++.      .|.|+-+|.++|+.+..+
T Consensus       155 ~~~~~~~~~~~~~~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~  206 (573)
T d1kb0a2         155 NTFEGQKGSLTITGAPRVFKGKVIIGNGGAEYGVRGYITAYDAETGERKWRW  206 (573)
T ss_dssp             ETTTTCCSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEE
T ss_pred             cCccCCcceEEeecceEEEeccEEEeeccccccccceEEEEecCCccceeee
Confidence            32   11101111111  1334555432      467999999999988765

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.08  E-value=0.0016  Score=52.58  Aligned_cols=219  Identities=10%  Similarity=0.087  Sum_probs=132.8

Q ss_pred             CCceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCceeee--ecC----CCCeeE
Q 014475           12 DTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVK--SLP----AEPIKP   85 (424)
Q Consensus        12 dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~--~~~----~~~v~~   85 (424)
                      ..++.|+|+++.+.++.+.-.    ..|..-.  |..+..+-+++.   ..|+-|+++......+  ..|    ...|..
T Consensus        82 g~~LQiFnletK~klks~~~~----e~VvfWk--Wis~~~L~lVT~---taVYHW~~~g~s~P~k~fdR~~~L~~~QIIn  152 (327)
T d1utca2          82 GKTLQIFNIEMKSKMKAHTMT----DDVTFWK--WISLNTVALVTD---NAVYHWSMEGESQPVKMFDRHSSLAGCQIIN  152 (327)
T ss_dssp             TTEEEEEETTTTEEEEEEECS----SCCCEEE--ESSSSEEEEECS---SEEEEEESSSSCCCEEEEECCGGGTTCEEEE
T ss_pred             CCeEEEEehhHhhhhceEEcC----CCcEEEE--ecCCCEEEEEcC---CceEEEcccCCCCchhhhhhcccccCceEEE
Confidence            357999999999998877643    2455545  766655444433   5899999965433222  222    457888


Q ss_pred             EEECCCCCEEEEec-------CCCcEEEEEccCcceeeeeccccCCeEEEEEccCC---cEEEEee---CCCcEEEEeCC
Q 014475           86 IAANSHGTYIAGGG-------QSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDG---SFLISGS---EDGCVRIWSLL  152 (424)
Q Consensus        86 ~~~s~~~~~l~~~~-------~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~---~~l~s~~---~dg~i~iwd~~  152 (424)
                      -..+++.++++..+       -.|.+.+|..+.+ .-+.+.+|.+....+.+..+.   +.++.+.   ..+++.+.++.
T Consensus       153 Y~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er~-~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~~~kLhIiEig  231 (327)
T d1utca2         153 YRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVG  231 (327)
T ss_dssp             EEECTTSCEEEEEEEEEETTEEEEEEEEEETTTT-EEEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECS
T ss_pred             EEECCCCCEEEEEeEecCCCceeEEEEEEEeccC-cCccccceeeeeEEEEcCCCCCCceEEEEEECCCCCcEEEEEEcC
Confidence            88899999987653       2367889987544 345667776544444443211   2233222   23678999886


Q ss_pred             cccchhcccccccceEEeec---CCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeee-cCcceeEEEECC
Q 014475          153 TVFEECESQRASHLYLHSFT---GHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDP  228 (424)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~---~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~-~~~~i~~~~~~~  228 (424)
                      .........  ..+.+..+.   ...+-..++.+++.-  ..+..-+.-|.+.+||+.++.++..-. ....|...+-+.
T Consensus       232 ~~~~g~~~f--~kk~vdi~fppea~~DFPvamqvs~ky--giiyviTK~G~i~lyDleTgt~i~~nRIs~~~iF~~a~~~  307 (327)
T d1utca2         232 TPPTGNQPF--PKKAVDVFFPPEAQNDFPVAMQISEKH--DVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHE  307 (327)
T ss_dssp             CCCTTCCCC--CCEEEECCCCTTCTTCCEEEEEEETTT--TEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEET
T ss_pred             CCccCCCCC--cceeEEEECCccccCCcEEEEEeeccC--CEEEEEecCcEEEEEEcccccEEEEeecCCCceEEeccCC
Confidence            632211110  011111111   123344567777766  788899999999999999999988766 455665555555


Q ss_pred             CCCEEEEEeCCCcEEE
Q 014475          229 AEHVFYAGSRDGSIYI  244 (424)
Q Consensus       229 ~~~~l~~~~~dg~i~i  244 (424)
                      +..=+++-..+|.+..
T Consensus       308 ~~~Gi~~VNr~GqVl~  323 (327)
T d1utca2         308 ATAGIIGVNRKGQVLS  323 (327)
T ss_dssp             TTTEEEEEETTSEEEE
T ss_pred             CCceEEEECCCCeEEE
Confidence            4444555556776544

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.07  E-value=0.0037  Score=57.19  Aligned_cols=48  Identities=25%  Similarity=0.448  Sum_probs=36.5

Q ss_pred             CCEEEEeCCCCcEEEEeCCCCcEEEEEeccCCCe-eEEEEEecCc-eeee
Q 014475          280 GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPV-NNILVVRRPL-YLNL  327 (424)
Q Consensus       280 ~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~v-~~l~~s~~~~-~l~~  327 (424)
                      +.++++|+.||.++-+|.++|+.+-+++...... .=+.+..+|+ |++.
T Consensus       497 gglVF~Gt~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~G~qYv~i  546 (582)
T d1flga_         497 GNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQYLGV  546 (582)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEE
T ss_pred             CCeEEEeCCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCEEEEEE
Confidence            6788889999999999999999999988543321 2257778884 5554

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=97.96  E-value=0.00035  Score=60.61  Aligned_cols=276  Identities=11%  Similarity=0.021  Sum_probs=138.0

Q ss_pred             eecCCCccccCCCCc----------eeEEEEECCCCceee----eecCCCCeeEEEECCCCCEEEEecCC-CcEEEEEcc
Q 014475           46 FLASSQLREQPSASS----------GSILYWSWSKPQVEV----KSLPAEPIKPIAANSHGTYIAGGGQS-GDIYMWEVA  110 (424)
Q Consensus        46 ~~~~~~~l~~~~~~~----------g~i~vwd~~~~~~~~----~~~~~~~v~~~~~s~~~~~l~~~~~d-g~v~iwd~~  110 (424)
                      ...+|+.++.++...          ..+.+||..+++...    ...+.......++.+++++++.|+.+ ..+.+||..
T Consensus        27 ~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~~~yd~~  106 (387)
T d1k3ia3          27 EPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSS  106 (387)
T ss_dssp             ETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEEEEGG
T ss_pred             EeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCCcceeEecCc
Confidence            335677777665321          247899998775432    22233344567888999999998765 579999998


Q ss_pred             Ccceeee--eccccCCeEEEEEccCCcEEEEeeCC------CcEEEEeCCcccchhcccccccceEEeecCCcC-----c
Q 014475          111 SGRLLKK--WHAHYRAVTCLVFSEDGSFLISGSED------GCVRIWSLLTVFEECESQRASHLYLHSFTGHTL-----R  177 (424)
Q Consensus       111 ~~~~~~~--~~~~~~~i~~~~~~~~~~~l~s~~~d------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-----~  177 (424)
                      +..-...  +.... .-...+..+|++.++.++.+      ..+.+||..+..-...........  ....+..     .
T Consensus       107 ~~~w~~~~~~~~~r-~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~--~~~~~~~~~~~~~  183 (387)
T d1k3ia3         107 SDSWIPGPDMQVAR-GYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPM--LTADKQGLYRSDN  183 (387)
T ss_dssp             GTEEEECCCCSSCC-SSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGG--CCCCTTGGGTTTC
T ss_pred             cCcccccccccccc-cccceeeecCCceeeeccccccccccceeeeecCCCCceeecCCCccccc--ccccccceeeccc
Confidence            7654322  22111 22456677789999988753      358899987632100000000000  0000000     0


Q ss_pred             eeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeeec-------C--cceeEEEE-CCCCCEEEEEeCCC-------
Q 014475          178 ITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVF-------P--SVIDAIAL-DPAEHVFYAGSRDG-------  240 (424)
Q Consensus       178 i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~-------~--~~i~~~~~-~~~~~~l~~~~~dg-------  240 (424)
                      -..+...+++  ..+..+...+.+..+|..+.........       .  ..-.++.+ ..+++.++.|+...       
T Consensus       184 ~~~~~~~~~G--~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~GG~~~~~~~~~~  261 (387)
T d1k3ia3         184 HAWLFGWKKG--SVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDAT  261 (387)
T ss_dssp             SCCEEECGGG--CEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCC
T ss_pred             eeEEEEeCCC--CEEEecCcCCcEEecCcccCcEeeccccccCcccCcccccccEEEeeccCCceEEEEeccCCCCCccc
Confidence            0111122333  6666777777777777766543322110       1  01122222 33566666665321       


Q ss_pred             -cEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCCC-----------cEEEEeCCCCcEEEEEe
Q 014475          241 -SIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDG-----------MVRVWDPITHNIVRMFR  307 (424)
Q Consensus       241 -~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg-----------~i~iwd~~~~~~~~~~~  307 (424)
                       ...+.+.........  .+.....+...... .+....+ +++++.|+.+.           .+.+||..+.+- ..+.
T Consensus       262 ~~~~~~~~~~~~~~~~--~~~~~~~~p~~r~~-~~~~~~~dg~i~v~GG~~~~~~~~~~~~~~~ve~Ydp~~~~W-~~~~  337 (387)
T d1k3ia3         262 TNAHIITLGEPGTSPN--TVFASNGLYFARTF-HTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTF-YKQN  337 (387)
T ss_dssp             CCEEEEECCSTTSCCE--EEECTTCCSSCCBS-CEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEE-EECC
T ss_pred             ceeecccccccccCCC--ceeecccccccccc-ceeeeccCCeEEEECCcccCccCCCCcEeceEEEEECCCCeE-EECC
Confidence             334444433221100  00111111111112 2333345 78999888431           478899876642 2221


Q ss_pred             ccC-CC--eeEEEEEecCceeeeccC
Q 014475          308 LAK-GP--VNNILVVRRPLYLNLGSF  330 (424)
Q Consensus       308 ~~~-~~--v~~l~~s~~~~~l~~~~~  330 (424)
                      ... ..  -....+.+||+.++.|+.
T Consensus       338 ~~~~~R~~Hs~a~l~~dG~v~v~GG~  363 (387)
T d1k3ia3         338 PNSIVRVYHSISLLLPDGRVFNGGGG  363 (387)
T ss_dssp             CCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred             CCCCcccceEEEEECCCCEEEEEeCC
Confidence            111 11  123345689999988874

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=97.83  E-value=0.0037  Score=56.98  Aligned_cols=242  Identities=10%  Similarity=0.007  Sum_probs=133.5

Q ss_pred             EEeecCCCCCceEEEeCCCCceEEEeeCCCCCC-CceEEecceeecCCCccccCC-----CCceeEEEEECCCCceeeee
Q 014475            4 LIASSSVADTGIGCWDLESGAEQLRYKSCASPP-HGLACVGQRFLASSQLREQPS-----ASSGSILYWSWSKPQVEVKS   77 (424)
Q Consensus         4 ~lat~~~~dg~i~vwd~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~l~~~~-----~~~g~i~vwd~~~~~~~~~~   77 (424)
                      .|+.++ .||.+.--|.++|+.+-.......+. ..++.-.  ...++..++..+     .. |.|.-+|..+++...+.
T Consensus       117 ~i~~~~-~~g~l~alda~tG~~~w~~~~~~~~~~~~~t~~p--~v~~~~vivg~~~~~~~~~-G~v~a~D~~TG~~~W~~  192 (571)
T d2ad6a1         117 QIVKKQ-ANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAP--FVAKDTVLMGCSGAELGVR-GAVNAFDLKTGELKWRA  192 (571)
T ss_dssp             EEEEEC-TTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCC--EEETTEEEEECBCGGGTCC-CEEEEEETTTCCEEEEE
T ss_pred             eEEEEe-CCCcEEeeehhhhhhhccccccccccccceeecC--eEeCCeEEEeecccccccc-CcEEEEECCCCcEEEEE
Confidence            345566 78999999999999887654322111 1111111  222333333222     23 88999999999987753


Q ss_pred             cCC--------------------------------------CCe-eEEEECCCCCEEEEecC----------------CC
Q 014475           78 LPA--------------------------------------EPI-KPIAANSHGTYIAGGGQ----------------SG  102 (424)
Q Consensus        78 ~~~--------------------------------------~~v-~~~~~s~~~~~l~~~~~----------------dg  102 (424)
                      ...                                      ..+ ...++.++...+..+..                ..
T Consensus       193 ~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~vW~~~s~D~~~g~~y~~tg~~~p~~~~~r~g~n~~s~  272 (571)
T d2ad6a1         193 FATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTM  272 (571)
T ss_dssp             ESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTT
T ss_pred             eccCCcccccccccccccccccCcccccccccCCcccccCCCccccccccchhcCeeeeecccccCcccccccccccccc
Confidence            221                                      111 23455666666655433                24


Q ss_pred             cEEEEEccCcceeeeeccccC---------CeEEEEEccCCc---EEEEeeCCCcEEEEeCCcccchhccccc-------
Q 014475          103 DIYMWEVASGRLLKKWHAHYR---------AVTCLVFSEDGS---FLISGSEDGCVRIWSLLTVFEECESQRA-------  163 (424)
Q Consensus       103 ~v~iwd~~~~~~~~~~~~~~~---------~i~~~~~~~~~~---~l~s~~~dg~i~iwd~~~~~~~~~~~~~-------  163 (424)
                      .+.-.|.++|+.+..++....         .........+++   .++.++.+|.+.++|.+++.........       
T Consensus       273 svvAld~~TG~~~W~~q~~~~D~Wd~D~~~~~~l~~~~~~g~~~~~v~~~~k~G~l~vlDr~tG~~i~~~~~~~~~~~~~  352 (571)
T d2ad6a1         273 TIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFK  352 (571)
T ss_dssp             EEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEE
T ss_pred             ceeeeeccchhheecccccCccccccccccccceeeeeccCccccceeeccccceEEEEecCCCcEeeeeccCCcccccc
Confidence            577889999998877754221         112222223443   4678889999999998886542110000       


Q ss_pred             -----ccce--------------EEeecCCcCce--eEEEEEEcCceeEEEEEe--------------------------
Q 014475          164 -----SHLY--------------LHSFTGHTLRI--TDIVIGYGGVSATIVSAS--------------------------  196 (424)
Q Consensus       164 -----~~~~--------------~~~~~~~~~~i--~~~~~~~~~~~~~l~~~~--------------------------  196 (424)
                           ....              ........+..  ...+++|..  ..++...                          
T Consensus       353 ~~~~~~~~~i~~~~~~~~~~~~g~~~~p~~~Gg~~w~~~a~dP~~--~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~~  430 (571)
T d2ad6a1         353 KVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPES--RTLYAGLNHICMDWEPFMLPYRAGQFFVGATLA  430 (571)
T ss_dssp             EECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTT--TEEEEEEECEEEEEEECCCCCCTTSCCCCEEEE
T ss_pred             cccccccccccCcccccccccCceEEEeccccccccccceECCCC--ceEEEeccccccccccccccccCCcccccccee
Confidence                 0000              00000000000  112333332  2222211                          


Q ss_pred             -----------CCCcEEEEecCCCceeeeeecCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCC
Q 014475          197 -----------EDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAES  251 (424)
Q Consensus       197 -----------~d~~v~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  251 (424)
                                 ..|.+.-+|+.+++.+.......+..+-.+...+.++++|+.||.++.+|.++++
T Consensus       431 ~~~~~~~~~~~~~G~l~AiD~~TG~~~W~~~~~~~~~~g~l~TagglVf~G~~dg~l~A~Da~tGe  496 (571)
T d2ad6a1         431 MYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKFAAWGGTLYTKGGLVWYATLDGYLKALDNKDGK  496 (571)
T ss_dssp             EEECTTSTTSCCCEEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCC
T ss_pred             eccccCCcccCCcccEEEeccCCCceeeEcCCCCCCCcceeEecCCEEEEECCCCeEEEEECCCCc
Confidence                       1256888999999988877754433322223356678889999999999999985

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.79  E-value=0.0058  Score=49.45  Aligned_cols=198  Identities=9%  Similarity=-0.077  Sum_probs=119.0

Q ss_pred             ceEEecceeecCCCccccCCCCceeEEEEECCCCceeeee-cCCCCeeEEEECCCCCEE-EEecCCCcEEEEEccCccee
Q 014475           38 GLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKS-LPAEPIKPIAANSHGTYI-AGGGQSGDIYMWEVASGRLL  115 (424)
Q Consensus        38 ~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~~-~~~~~v~~~~~s~~~~~l-~~~~~dg~v~iwd~~~~~~~  115 (424)
                      .+..++  |.+..+.+..+...++.|...+++........ .....+..+++..-+..| .+-...+.|.+.++......
T Consensus        37 ~~~~ld--~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~~  114 (263)
T d1npea_          37 VIIGLA--FDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRR  114 (263)
T ss_dssp             EEEEEE--EETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE
T ss_pred             cEEEEE--EEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEeccccccEEEEeccCCeEEEeccCCCEEEEEecCCceEE
Confidence            355667  88888877776555588999998866544333 233578899998755545 45556778999998755443


Q ss_pred             eeeccccCCeEEEEEccCCcEEEEeeCC-Cc--EEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEE
Q 014475          116 KKWHAHYRAVTCLVFSEDGSFLISGSED-GC--VRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATI  192 (424)
Q Consensus       116 ~~~~~~~~~i~~~~~~~~~~~l~s~~~d-g~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l  192 (424)
                      ..+......+..+++.|...++...... +.  |.--++..         ...  .......-....++++.+... ...
T Consensus       115 ~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG---------~~~--~~i~~~~~~~P~glaiD~~~~-~lY  182 (263)
T d1npea_         115 VLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDG---------TNR--RILAQDNLGLPNGLTFDAFSS-QLC  182 (263)
T ss_dssp             EEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTS---------CCC--EEEECTTCSCEEEEEEETTTT-EEE
T ss_pred             EEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCC---------CCc--eeeeeecccccceEEEeecCc-EEE
Confidence            3333344678999999966666544322 23  43334432         111  111222334557888887762 344


Q ss_pred             EEEeCCCcEEEEecCCCceeeeeecCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCC
Q 014475          193 VSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAE  250 (424)
Q Consensus       193 ~~~~~d~~v~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  250 (424)
                      .+-...+.|...|+........+........+++. .+.++++-...+.|...|..++
T Consensus       183 w~d~~~~~I~~~~~~g~~~~~v~~~~~~P~~lav~-~~~lYwtd~~~~~I~~~~~~~g  239 (263)
T d1npea_         183 WVDAGTHRAECLNPAQPGRRKVLEGLQYPFAVTSY-GKNLYYTDWKTNSVIAMDLAIS  239 (263)
T ss_dssp             EEETTTTEEEEEETTEEEEEEEEECCCSEEEEEEE-TTEEEEEETTTTEEEEEETTTT
T ss_pred             EEeCCCCEEEEEECCCCCeEEEECCCCCcEEEEEE-CCEEEEEECCCCEEEEEECCCC
Confidence            45456788999998755443333322334567664 3334444446678888888765

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.64  E-value=0.0099  Score=48.13  Aligned_cols=225  Identities=10%  Similarity=-0.022  Sum_probs=130.4

Q ss_pred             EEeecCCCCCceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCc----ee-eeec
Q 014475            4 LIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQ----VE-VKSL   78 (424)
Q Consensus         4 ~lat~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~----~~-~~~~   78 (424)
                      +|++..   ..|+-.++.+......+.    ....+..++  |.+..+.+.-+....+.|.--+++...    .. ....
T Consensus         4 Ll~s~~---~~I~~~~l~~~~~~~~~~----~~~~~~~id--~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~   74 (266)
T d1ijqa1           4 LFFTNR---HEVRKMTLDRSEYTSLIP----NLRNVVALD--TEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISR   74 (266)
T ss_dssp             EEEECB---SSEEEEETTSCCCEEEEC----SCSSEEEEE--EETTTTEEEEEETTTTEEEEEEC--------CEEEECS
T ss_pred             EEEECC---CeEEEEECCCCcceeeeC----CCCceEEEE--EEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeC
Confidence            344444   359989998765444332    234566777  988888777665444778777765422    11 1222


Q ss_pred             CCCCeeEEEECCCCCEEE-EecCCCcEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEee--CCCcEEEEeCCccc
Q 014475           79 PAEPIKPIAANSHGTYIA-GGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGS--EDGCVRIWSLLTVF  155 (424)
Q Consensus        79 ~~~~v~~~~~s~~~~~l~-~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~--~dg~i~iwd~~~~~  155 (424)
                      ....+..+++.+.+..|. +-...+.|.+.++........+.........++++|...++....  ..+.|.-.++..  
T Consensus        75 ~~~~p~glAvD~~~~~lY~~d~~~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dG--  152 (266)
T d1ijqa1          75 DIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG--  152 (266)
T ss_dssp             SCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTS--
T ss_pred             CCCCcceEEEeeccceEEEEecCCCEEEeEecCCceEEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCC--
Confidence            235577888887554444 445567899999876665555555566789999998555554433  334566666633  


Q ss_pred             chhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeeec---CcceeEEEECCCCCE
Q 014475          156 EECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVF---PSVIDAIALDPAEHV  232 (424)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~---~~~i~~~~~~~~~~~  232 (424)
                               ..........-.....+++.+.+. ....+-...+.|...|+...........   ......+++. .+.+
T Consensus       153 ---------s~~~~l~~~~~~~p~gl~iD~~~~-~lYw~d~~~~~I~~~~~dG~~~~~~~~~~~~~~~p~~lav~-~~~l  221 (266)
T d1ijqa1         153 ---------VDIYSLVTENIQWPNGITLDLLSG-RLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKV  221 (266)
T ss_dssp             ---------CCEEEEECSSCSCEEEEEEETTTT-EEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEE
T ss_pred             ---------CceecccccccceeeEEEeecccc-EEEEecCCcCEEEEEECCCCCEEEEEeCCCcccccEEEEEE-CCEE
Confidence                     111112222334567888887662 4445556678898889865443333221   1234556665 2333


Q ss_pred             EEEEeCCCcEEEEEcCCC
Q 014475          233 FYAGSRDGSIYIAALNAE  250 (424)
Q Consensus       233 l~~~~~dg~i~i~d~~~~  250 (424)
                      +++-..++.|+..+..++
T Consensus       222 y~td~~~~~I~~~~~~~g  239 (266)
T d1ijqa1         222 FWTDIINEAIFSANRLTG  239 (266)
T ss_dssp             EEEETTTTEEEEEETTTC
T ss_pred             EEEECCCCeEEEEECCCC
Confidence            444446677777776654

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=97.49  E-value=0.022  Score=51.61  Aligned_cols=241  Identities=9%  Similarity=0.112  Sum_probs=134.9

Q ss_pred             EeecCCCCCceEEEeCCCCceEEEeeCCCCCCC-ceEEecceeecCCCccccC-----CCCceeEEEEECCCCceeeeec
Q 014475            5 IASSSVADTGIGCWDLESGAEQLRYKSCASPPH-GLACVGQRFLASSQLREQP-----SASSGSILYWSWSKPQVEVKSL   78 (424)
Q Consensus         5 lat~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~l~~~-----~~~~g~i~vwd~~~~~~~~~~~   78 (424)
                      ++.+. .|+.|.-.|..+|+.+-.......... .+....  ...++..++-.     ... |.|.-+|..+++...+..
T Consensus       120 v~~~~-~~g~l~Alda~tG~~~w~~~~~~~~~~~~~~~~p--~v~~~~vivg~~~~~~~~~-G~v~a~D~~TG~~~W~~~  195 (560)
T d1kv9a2         120 VYVGT-LDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAP--RVVKGKVIIGNGGAEYGVR-GFVSAYDADTGKLAWRFY  195 (560)
T ss_dssp             EEEEC-TTSEEEEEETTTCCEEEEEECSCTTSSCBCCSCC--EEETTEEEECCBCTTTCCB-CEEEEEETTTCCEEEEEE
T ss_pred             EEEEe-CCCEEEEEECCCCcEEeccCccCcccceeeeeee--eeecCcccccccceecccc-ceEEEEECCCceEEeeee
Confidence            55566 689999999999999987754332211 111111  11223322211     122 789999999999876643


Q ss_pred             CC-------------------------------CCe-eEEEECCCCCEEEEecC-------------------CCcEEEE
Q 014475           79 PA-------------------------------EPI-KPIAANSHGTYIAGGGQ-------------------SGDIYMW  107 (424)
Q Consensus        79 ~~-------------------------------~~v-~~~~~s~~~~~l~~~~~-------------------dg~v~iw  107 (424)
                      ..                               ..+ ..+++.+...++..+..                   ...|.-.
T Consensus       196 t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~W~~~s~D~~~~l~y~~tgn~~~~~~~~~~~~~g~n~~s~sivAl  275 (560)
T d1kv9a2         196 TVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAI  275 (560)
T ss_dssp             SSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEE
T ss_pred             eccccccCCccccccccccccccccccccccCCCCcccccccccccCeeeecCCCCcccccccccccCCccccceeeEEe
Confidence            10                               011 22455666665554321                   2347777


Q ss_pred             EccCcceeeeeccccCCe---------EEEEEccCC---cEEEEeeCCCcEEEEeCCcccchhcccccccceEEee----
Q 014475          108 EVASGRLLKKWHAHYRAV---------TCLVFSEDG---SFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSF----  171 (424)
Q Consensus       108 d~~~~~~~~~~~~~~~~i---------~~~~~~~~~---~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~----  171 (424)
                      |+++++....++.....+         .-+....++   ..++.+..+|.+.++|..++.................    
T Consensus       276 d~~tG~~~W~~Q~~~~D~wd~d~~~~~~l~~~~~~g~~~~~v~~~~k~G~~~~lDr~tG~~i~~~~~~~~~~~~~~d~~~  355 (560)
T d1kv9a2         276 RPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLAT  355 (560)
T ss_dssp             CTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTT
T ss_pred             cCCccceeEEEeccccccccccccceeeeeeeecCCceeeeeeecCccceEEEEecCCCcccccccccccccccccChhh
Confidence            889998876665422211         112222234   3577888999999999988654322111110000000    


Q ss_pred             -------------------cCCcC--ceeEEEEEEcCceeEEEEEe----------------------------------
Q 014475          172 -------------------TGHTL--RITDIVIGYGGVSATIVSAS----------------------------------  196 (424)
Q Consensus       172 -------------------~~~~~--~i~~~~~~~~~~~~~l~~~~----------------------------------  196 (424)
                                         .+-.+  .-...+++|+.  ..++...                                  
T Consensus       356 ~~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~--~~~yvp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~  433 (560)
T d1kv9a2         356 GRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGT--GLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPA  433 (560)
T ss_dssp             CCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTT--TEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCG
T ss_pred             ccccccccccccccceeeeeccccccccccccccCCC--CeeecccccccceeeccccccccccccccccCcccccCCCC
Confidence                               00000  00122334433  2222211                                  


Q ss_pred             --CCCcEEEEecCCCceeeeeecCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCC
Q 014475          197 --EDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAES  251 (424)
Q Consensus       197 --~d~~v~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  251 (424)
                        ..|.+.-||+.+++.+.......+...-.+.-.+.++++|+.||.++.+|.++++
T Consensus       434 ~~~~G~l~A~D~~tGk~~W~~~~~~~~~gg~l~TagglVF~G~~dg~l~A~Da~tGe  490 (560)
T d1kv9a2         434 AVVSGALLAWDPVKQKAAWKVPYPTHWNGGTLSTAGNLVFQGTAAGQMHAYSADKGE  490 (560)
T ss_dssp             GGCEEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCC
T ss_pred             cccccceEEEeCCCCeEeeeccCCCCCCCceeEECCCEEEEECCCCcEEEEECCCCc
Confidence              1256888999999998888765554433334457788899999999999999985

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=97.42  E-value=0.025  Score=47.30  Aligned_cols=201  Identities=12%  Similarity=0.191  Sum_probs=120.4

Q ss_pred             CCCCEEEEecCCCcEEEEEccCcceeeeeccccCCeEEEEEcc------CCcEEEEeeC--CC--cEEEEeCCcccchhc
Q 014475           90 SHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSE------DGSFLISGSE--DG--CVRIWSLLTVFEECE  159 (424)
Q Consensus        90 ~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~------~~~~l~s~~~--dg--~i~iwd~~~~~~~~~  159 (424)
                      |+..+++.....+-|++||++ |+.+..+.  .+.++.+..-.      ...-+++++.  ++  .|.+|.+....    
T Consensus        38 p~~SlI~gTdK~~Gl~vYdL~-G~~l~~~~--~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~----  110 (353)
T d1h6la_          38 PQNSKLITTNKKSGLAVYSLE-GKMLHSYH--TGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKN----  110 (353)
T ss_dssp             GGGCEEEEEETTSCCEEEETT-CCEEEECC--SSCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTT----
T ss_pred             cCccEEEEEcCcCCEEEEcCC-CcEEEecc--cCCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCcc----
Confidence            345666666666669999984 87777764  34566555432      2223455552  22  57778774211    


Q ss_pred             ccccccceEEeecC-------CcCceeEEEEEEc--CceeEEEEEeCCCcEEEEecC---CC----ceeeeeecCcceeE
Q 014475          160 SQRASHLYLHSFTG-------HTLRITDIVIGYG--GVSATIVSASEDRTCKVWSLL---KG----RLLRNIVFPSVIDA  223 (424)
Q Consensus       160 ~~~~~~~~~~~~~~-------~~~~i~~~~~~~~--~~~~~l~~~~~d~~v~iwd~~---~~----~~~~~~~~~~~i~~  223 (424)
                            ..+..+..       -...+..+|+..+  ...-+++....+|.+..|.+.   .+    +.++.+..+..+..
T Consensus       111 ------~~l~~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~~~~q~EG  184 (353)
T d1h6la_         111 ------GTLQSITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFKMNSQTEG  184 (353)
T ss_dssp             ------TEEEECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEECSSCEEE
T ss_pred             ------cccccccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccCCCCccce
Confidence                  11111111       1224677777443  221366777788999888763   22    45566778889999


Q ss_pred             EEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeec--ccCcCeEEEEecC----CCEEEE-eCCCCcEEEEe
Q 014475          224 IALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLS--DHSKAVTCLAYST----GDLLIS-GSEDGMVRVWD  296 (424)
Q Consensus       224 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~~~----~~~l~t-~~~dg~i~iwd  296 (424)
                      |.+.+....|+++-.+..++.++........    ...+....  .....+..++.-.    ..+|++ .-.+++..+||
T Consensus       185 CVvDde~~~LyisEE~~Giw~~~a~~~~~~~----~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vyd  260 (353)
T d1h6la_         185 MAADDEYGSLYIAEEDEAIWKFSAEPDGGSN----GTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAIYE  260 (353)
T ss_dssp             EEEETTTTEEEEEETTTEEEEEESSTTSCSC----CEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEE
T ss_pred             EEEeCCCCcEEEecCccceEEEEeccCCCcc----ceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCCCeEEEEe
Confidence            9999999999999888777777665432211    12222221  1345677776532    224444 44678899999


Q ss_pred             CCC-CcEEEEEe
Q 014475          297 PIT-HNIVRMFR  307 (424)
Q Consensus       297 ~~~-~~~~~~~~  307 (424)
                      ..+ .+.+..|.
T Consensus       261 r~~~~~~~g~F~  272 (353)
T d1h6la_         261 RQGQNKYVADFQ  272 (353)
T ss_dssp             SSTTCCEEEEEE
T ss_pred             cCCCccccceEE
Confidence            876 36666665

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=97.33  E-value=0.031  Score=50.98  Aligned_cols=243  Identities=10%  Similarity=0.063  Sum_probs=134.5

Q ss_pred             EEeecCCCCCceEEEeCCCCceEEEeeCCCCCCC-ceEEecceeecCCCccccCCC----CceeEEEEECCCCceeeeec
Q 014475            4 LIASSSVADTGIGCWDLESGAEQLRYKSCASPPH-GLACVGQRFLASSQLREQPSA----SSGSILYWSWSKPQVEVKSL   78 (424)
Q Consensus         4 ~lat~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~l~~~~~----~~g~i~vwd~~~~~~~~~~~   78 (424)
                      ++..++ .|+.|.--|.++|+++..+.....+.. .++.-.  ...++..++-.+.    ..|.|+-+|..+++...+..
T Consensus       123 ~v~~~t-~dg~l~Alda~tG~~~w~~~~~d~~~~~~~t~~P--~v~~~~vivg~~~~e~~~~G~v~A~Da~TG~~~W~~~  199 (596)
T d1w6sa_         123 LILKTQ-LDGNVAALNAETGETVWKVENSDIKVGSTLTIAP--YVVKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAY  199 (596)
T ss_dssp             EEEEEC-TTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCC--EEETTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEE
T ss_pred             EEEEEe-CCCCeEeeccccCceeccccccccccccccccCC--cEECCeEEEeeccccccccCceEEEECCCCcEEEEee
Confidence            466677 789999999999999987754321111 122111  2223333332221    12899999999999887632


Q ss_pred             CC--------------------------------------C-CeeEEEECCCCCEEEEecC----------------CCc
Q 014475           79 PA--------------------------------------E-PIKPIAANSHGTYIAGGGQ----------------SGD  103 (424)
Q Consensus        79 ~~--------------------------------------~-~v~~~~~s~~~~~l~~~~~----------------dg~  103 (424)
                      ..                                      . .-..+++.+...++..+..                ...
T Consensus       200 t~~~~~~~~~~~~~~~~~~~~g~~~~~~~tw~g~~~~~gg~~~W~~~s~D~~~~lvy~~tg~~~p~~~~~r~g~n~ys~s  279 (596)
T d1w6sa_         200 ATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMT  279 (596)
T ss_dssp             SSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSE
T ss_pred             ccCCccccccccccccccccccccccccccCCCCceecCCCccccccccccCCCeeeccccccccccccccccccccccc
Confidence            11                                      0 1123455566666655432                234


Q ss_pred             EEEEEccCcceeeeecc--cc-------CCeEEEEE-ccCC---cEEEEeeCCCcEEEEeCCcccchhccccc-------
Q 014475          104 IYMWEVASGRLLKKWHA--HY-------RAVTCLVF-SEDG---SFLISGSEDGCVRIWSLLTVFEECESQRA-------  163 (424)
Q Consensus       104 v~iwd~~~~~~~~~~~~--~~-------~~i~~~~~-~~~~---~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-------  163 (424)
                      |.-.|+++|+.+..++.  |.       ..+..+.. ..++   +.++.+..+|.+.++|..++.........       
T Consensus       280 ivAlD~~TG~~~W~~Q~~~~D~Wd~d~~~~~~l~d~~~~~G~~~~~v~~~~k~G~~~vlDr~tG~~i~~~~~~~~~~~~~  359 (596)
T d1w6sa_         280 IFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFK  359 (596)
T ss_dssp             EEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEE
T ss_pred             ccccccccccccccccceeccccCCccccceeeeeccccccccccceeccccccceeeecCCCCceeeeccccccccccc
Confidence            77889999998876653  21       12222222 2233   35778889999999999886543211100       


Q ss_pred             -----ccceEEe-------------e-cCCcC--ceeEEEEEEcCceeEEEEE---------------------------
Q 014475          164 -----SHLYLHS-------------F-TGHTL--RITDIVIGYGGVSATIVSA---------------------------  195 (424)
Q Consensus       164 -----~~~~~~~-------------~-~~~~~--~i~~~~~~~~~~~~~l~~~---------------------------  195 (424)
                           ...++..             . .+-.+  .-...+++|..  .+++..                           
T Consensus       360 ~~d~~~~~p~~~~~~~~~~~~~~~~i~pg~~Gg~nw~~~a~dp~~--~l~yvp~~~~~~~~~~~~~~~~~g~~~~g~~~~  437 (596)
T d1w6sa_         360 SVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKR--ELFFMGINHICMDWEPFMLPYKAGQFFVGATLN  437 (596)
T ss_dssp             EECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTT--TEEEEEEECEEEEEEECCCCCCTTSCCCCEEEE
T ss_pred             cccccccccccCccccccCCccceeEecccccccccCccccCCCC--ceEEecccccccccccccccccccccccccccc
Confidence                 0000000             0 00000  00111222222  111111                           


Q ss_pred             ---e---------CCCcEEEEecCCCceeeeeecCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCC
Q 014475          196 ---S---------EDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAES  251 (424)
Q Consensus       196 ---~---------~d~~v~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  251 (424)
                         +         .-|.+.-||+.+++.+.......+...-.++..+.++++|+.||.++.+|.++++
T Consensus       438 ~~~~~~g~~~~~~~~G~l~A~D~~TG~~~W~~~~~~~~~gg~lsTagglVF~G~~Dg~l~A~Da~TGe  505 (596)
T d1w6sa_         438 MYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKMERFAVWGGTMATAGDLVFYGTLDGYLKARDSDTGD  505 (596)
T ss_dssp             EEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCC
T ss_pred             cccCcccCcccCCCcceEEEEeCCCCceecccCCCCCCccceeEecCCEEEEECCCCeEEEEECCCCc
Confidence               0         1257888999999988777655444333333467788889999999999999985

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.28  E-value=0.048  Score=47.49  Aligned_cols=244  Identities=14%  Similarity=0.136  Sum_probs=119.6

Q ss_pred             eeEEEECCCCCEEEEec-C----CCcEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEeeCC--------------
Q 014475           83 IKPIAANSHGTYIAGGG-Q----SGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSED--------------  143 (424)
Q Consensus        83 v~~~~~s~~~~~l~~~~-~----dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d--------------  143 (424)
                      +...++||+++++|.+- .    .-.|+++|+.+++.+...-. ......+.|.++++.|+-...+              
T Consensus       127 ~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~-~~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~~~~~~  205 (430)
T d1qfma1         127 LRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLE-RVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTN  205 (430)
T ss_dssp             EEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEE-EECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCC
T ss_pred             ecceEecCCCCEEEEEeccccCchheeEEeccCcceecccccc-cccccceEEcCCCCEEEEEEeccccCcccccccccC
Confidence            45667899999998642 2    23599999999987642211 1223568999999887754322              


Q ss_pred             --CcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEe---CCCcEEEE--ecCCCce-----
Q 014475          144 --GCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSAS---EDRTCKVW--SLLKGRL-----  211 (424)
Q Consensus       144 --g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~---~d~~v~iw--d~~~~~~-----  211 (424)
                        ..|..+.+.+...       ....+.........+..+..+.++  ++++...   .+....+|  |+.....     
T Consensus       206 ~~~~v~~h~lgt~~~-------~d~~v~~e~d~~~~~~~~~~s~d~--~~l~i~~~~~~~~~~~~~~~d~~~~~~~~~~~  276 (430)
T d1qfma1         206 LHQKLYYHVLGTDQS-------EDILCAEFPDEPKWMGGAELSDDG--RYVLLSIREGCDPVNRLWYCDLQQESNGITGI  276 (430)
T ss_dssp             CCCEEEEEETTSCGG-------GCEEEECCTTCTTCEEEEEECTTS--CEEEEEEECSSSSCCEEEEEEGGGSSSSSCSS
T ss_pred             CcceEEEEECCCCcc-------ccccccccccCCceEEeeeccCCc--ceeeEEeeccCCccEEEEEeeCCCcccccccc
Confidence              2577777765321       111222222223344455566666  5554322   23333444  5432211     


Q ss_pred             ---eeeeec-CcceeEEEECCCCCEEEEEeC---CCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEE
Q 014475          212 ---LRNIVF-PSVIDAIALDPAEHVFYAGSR---DGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLL  283 (424)
Q Consensus       212 ---~~~~~~-~~~i~~~~~~~~~~~l~~~~~---dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l  283 (424)
                         ...+.. .....- ..+..+.+++....   ++.|...++......    .++  ..+..+...+..-.+.. +++|
T Consensus       277 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~Tn~~a~~~~L~~~~~~~~~~~----~w~--~vi~~~~~~~~~~~~~~~~~~l  349 (430)
T d1qfma1         277 LKWVKLIDNFEGEYDY-VTNEGTVFTFKTNRHSPNYRLINIDFTDPEES----KWK--VLVPEHEKDVLEWVACVRSNFL  349 (430)
T ss_dssp             CCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTBCCGG----GCE--EEECCCSSCEEEEEEEETTTEE
T ss_pred             cceeEeecccccceEE-EecCCceeecccCcccccceeEEecCCCCccc----cce--EEecccCcceeeeEEEEECCEE
Confidence               111111 112222 22222333333322   356666666553210    011  12223444444333333 5566


Q ss_pred             EEe-CCCC--cEEEEeCCCCcEEEEEeccCCCeeEEEEEecCceee--ecc--CCCceeeccCCCCC
Q 014475          284 ISG-SEDG--MVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLN--LGS--FSNPHTSSRRHGSQ  343 (424)
Q Consensus       284 ~t~-~~dg--~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~--~~~--~d~~i~iw~~~~~~  343 (424)
                      +.. -.++  .|++++..+++....+....+.|..+...++...+.  ..|  .-.++.-+|+.+++
T Consensus       350 vl~~~~~~~~~l~v~~~~~~~~~~~~~~~~~sv~~~~~~~~~~~~~~~~ss~~tP~~~y~~Dl~t~~  416 (430)
T d1qfma1         350 VLCYLHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE  416 (430)
T ss_dssp             EEEEEETTEEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred             EEEEEcCCEeEEEEEECCCCcEEEecCCCCceEeeccCCCCCCEEEEEEcCCCCCCeEEEEECCCCC
Confidence            544 3554  488999988877666554555555554444443332  222  22345555555543

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=97.22  E-value=0.071  Score=48.28  Aligned_cols=53  Identities=15%  Similarity=0.220  Sum_probs=40.4

Q ss_pred             CcEEEEecCCCceeeeeecCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCC
Q 014475          199 RTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAES  251 (424)
Q Consensus       199 ~~v~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  251 (424)
                      |.+.-||+.+++.+.......+...=..+-.+.++++|+.||.++.+|.++++
T Consensus       457 G~l~AiD~~tGk~~W~~~~~~p~~gg~lstagglVF~G~~dg~l~A~Da~TGe  509 (573)
T d1kb0a2         457 GRLLAWDPVAQKAAWSVEHVSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGE  509 (573)
T ss_dssp             EEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCC
T ss_pred             ccEEEeCCCCCceEeeecCCCCCCCceEEEcCCEEEEECCCCeEEEEECCCCc
Confidence            46788899999988887755443322333467888899999999999999985

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.03  E-value=0.087  Score=45.75  Aligned_cols=243  Identities=9%  Similarity=0.043  Sum_probs=125.5

Q ss_pred             eeecCCCccccC----CCCceeEEEEECCCCceeeeecCCCCeeEEEECCCCCEEEEecCC----------------CcE
Q 014475           45 RFLASSQLREQP----SASSGSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQS----------------GDI  104 (424)
Q Consensus        45 ~~~~~~~~l~~~----~~~~g~i~vwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d----------------g~v  104 (424)
                      .++|++++++.+    |.+...+++.|+.+++.............+.|.+|++.|+....+                ..|
T Consensus       131 ~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~~~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~~~~~~~~~~v  210 (430)
T d1qfma1         131 AFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKL  210 (430)
T ss_dssp             EECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEEECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEE
T ss_pred             EecCCCCEEEEEeccccCchheeEEeccCcceecccccccccccceEEcCCCCEEEEEEeccccCcccccccccCCcceE
Confidence            389999999844    444578999999999865443333334678999999988754322                257


Q ss_pred             EEEEccCcce--eeeeccc--cCCeEEEEEccCCcEEEEeeC---CCcEEEE--eCCcccchhcccccccceEEeecCCc
Q 014475          105 YMWEVASGRL--LKKWHAH--YRAVTCLVFSEDGSFLISGSE---DGCVRIW--SLLTVFEECESQRASHLYLHSFTGHT  175 (424)
Q Consensus       105 ~iwd~~~~~~--~~~~~~~--~~~i~~~~~~~~~~~l~s~~~---dg~i~iw--d~~~~~~~~~~~~~~~~~~~~~~~~~  175 (424)
                      ..+.+.+...  ...+...  ...+..+..++++++++....   +....+|  |+........   .............
T Consensus       211 ~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~~~~~d~~~~~~~~~---~~~~~~~~~~~~~  287 (430)
T d1qfma1         211 YYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGIT---GILKWVKLIDNFE  287 (430)
T ss_dssp             EEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSC---SSCCCEEEECSSS
T ss_pred             EEEECCCCccccccccccccCCceEEeeeccCCcceeeEEeeccCCccEEEEEeeCCCcccccc---cccceeEeecccc
Confidence            7787766532  2233332  334667788889998764332   3333444  5432111000   0111112222222


Q ss_pred             CceeEEEEEEcCceeEEEEEeC---CCcEEEEecCCCcee--e-eee-cCcceeEEEECCCCCEEEEE-eCCC--cEEEE
Q 014475          176 LRITDIVIGYGGVSATIVSASE---DRTCKVWSLLKGRLL--R-NIV-FPSVIDAIALDPAEHVFYAG-SRDG--SIYIA  245 (424)
Q Consensus       176 ~~i~~~~~~~~~~~~~l~~~~~---d~~v~iwd~~~~~~~--~-~~~-~~~~i~~~~~~~~~~~l~~~-~~dg--~i~i~  245 (424)
                      .... .....++  .+++....   ++.|...++......  . .+. +...+..-.+...+.+|+.. ..++  .|+++
T Consensus       288 ~~~~-~~~~~~~--~~~~~Tn~~a~~~~L~~~~~~~~~~~~w~~vi~~~~~~~~~~~~~~~~~~lvl~~~~~~~~~l~v~  364 (430)
T d1qfma1         288 GEYD-YVTNEGT--VFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLH  364 (430)
T ss_dssp             SCEE-EEEEETT--EEEEEECTTCTTCEEEEEETTBCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEE
T ss_pred             cceE-EEecCCc--eeecccCcccccceeEEecCCCCccccceEEecccCcceeeeEEEEECCEEEEEEEcCCEeEEEEE
Confidence            2222 2222222  34443332   356666776654321  2 222 23334433344445555554 3454  57888


Q ss_pred             EcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CC-EEEEe-C--CCCcEEEEeCCCCcE
Q 014475          246 ALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GD-LLISG-S--EDGMVRVWDPITHNI  302 (424)
Q Consensus       246 d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~-~l~t~-~--~dg~i~iwd~~~~~~  302 (424)
                      ++..+.         .........+.+..+...+ .. +.++- +  .=.++.-+|+.+++.
T Consensus       365 ~~~~~~---------~~~~~~~~~~sv~~~~~~~~~~~~~~~~ss~~tP~~~y~~Dl~t~~~  417 (430)
T d1qfma1         365 DLATGA---------LLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEEL  417 (430)
T ss_dssp             ETTTCC---------EEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSSC
T ss_pred             ECCCCc---------EEEecCCCCceEeeccCCCCCCEEEEEEcCCCCCCeEEEEECCCCCc
Confidence            887763         1112222234455444444 33 33322 2  236788888888753

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=96.18  E-value=0.27  Score=40.84  Aligned_cols=199  Identities=14%  Similarity=0.218  Sum_probs=112.8

Q ss_pred             EEeecCCCCCceEEEeCCCCceEEEeeCCCCCCCceEEeccee----ecCCCccccCCCC-c--eeEEEEECCCCceeee
Q 014475            4 LIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRF----LASSQLREQPSAS-S--GSILYWSWSKPQVEVK   76 (424)
Q Consensus         4 ~lat~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~----~~~~~~l~~~~~~-~--g~i~vwd~~~~~~~~~   76 (424)
                      +++... +++-|.+||+. |+.+..+..     ..+.-++.+.    .....-+++++.. +  .+|.+|.+........
T Consensus        42 lI~gTd-K~~Gl~vYdL~-G~~l~~~~~-----Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~~l~  114 (353)
T d1h6la_          42 KLITTN-KKSGLAVYSLE-GKMLHSYHT-----GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQ  114 (353)
T ss_dssp             EEEEEE-TTSCCEEEETT-CCEEEECCS-----SCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTTEEE
T ss_pred             EEEEEc-CcCCEEEEcCC-CcEEEeccc-----CCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCcccccc
Confidence            344445 67779999985 888877643     2343333222    1222234444422 1  3688888764322211


Q ss_pred             ec---------CCCCeeEEEE--CCC-CC-EEEEecCCCcEEEEEccC---c----ceeeeeccccCCeEEEEEccCCcE
Q 014475           77 SL---------PAEPIKPIAA--NSH-GT-YIAGGGQSGDIYMWEVAS---G----RLLKKWHAHYRAVTCLVFSEDGSF  136 (424)
Q Consensus        77 ~~---------~~~~v~~~~~--s~~-~~-~l~~~~~dg~v~iwd~~~---~----~~~~~~~~~~~~i~~~~~~~~~~~  136 (424)
                      ..         ....+..+++  +|. +. ++++...+|.+..|.+..   +    +.++.+. -...+..+.+.+..+.
T Consensus       115 ~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~-~~~q~EGCVvDde~~~  193 (353)
T d1h6la_         115 SITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFK-MNSQTEGMAADDEYGS  193 (353)
T ss_dssp             ECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEE-CSSCEEEEEEETTTTE
T ss_pred             cccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccC-CCCccceEEEeCCCCc
Confidence            11         1234667776  664 44 566677789998887732   2    2334443 3457889999988888


Q ss_pred             EEEeeCCCcEEEEeCCcccchhcccccccceEEeec--CCcCceeEEEEEEc--CceeEEEEEeCCCcEEEEecCCC-ce
Q 014475          137 LISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFT--GHTLRITDIVIGYG--GVSATIVSASEDRTCKVWSLLKG-RL  211 (424)
Q Consensus       137 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~--~~~~~l~~~~~d~~v~iwd~~~~-~~  211 (424)
                      |..+-.+.-+..++.+....      .....+....  .....+-.+++-..  +.+-++++.-.+++..+||.... +.
T Consensus       194 LyisEE~~Giw~~~a~~~~~------~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vydr~~~~~~  267 (353)
T d1h6la_         194 LYIAEEDEAIWKFSAEPDGG------SNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAIYERQGQNKY  267 (353)
T ss_dssp             EEEEETTTEEEEEESSTTSC------SCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCE
T ss_pred             EEEecCccceEEEEeccCCC------ccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCCCeEEEEecCCCccc
Confidence            99888876665555432110      1111222221  23566777776543  34455556667888999998763 44


Q ss_pred             eeeee
Q 014475          212 LRNIV  216 (424)
Q Consensus       212 ~~~~~  216 (424)
                      +..+.
T Consensus       268 ~g~F~  272 (353)
T d1h6la_         268 VADFQ  272 (353)
T ss_dssp             EEEEE
T ss_pred             cceEE
Confidence            44443

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.63  E-value=0.23  Score=41.81  Aligned_cols=187  Identities=7%  Similarity=0.012  Sum_probs=99.2

Q ss_pred             CCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEE
Q 014475          123 RAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCK  202 (424)
Q Consensus       123 ~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~  202 (424)
                      ...+-++.++...+++.|+.++ +.|........................  -..|..++|+.+    .++.. .++.+.
T Consensus        37 ~~~~LLAVsn~~GLl~aa~~~~-l~V~~t~~l~~~~~~~~~~~~~~~~~~--ip~v~~vafs~d----~l~v~-~~~~l~  108 (381)
T d1xipa_          37 ASLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKE--IPDVIFVCFHGD----QVLVS-TRNALY  108 (381)
T ss_dssp             SCCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEE--CTTEEEEEEETT----EEEEE-ESSEEE
T ss_pred             cccceEEEeCCCCEEEEECCCE-EEEEEHHHHHHHhhccCCCCcceeccC--CCCeEEEEeeCC----EEEEE-eCCCEE
Confidence            4466788888777888888774 677776443222211111111111111  125777888633    34443 345677


Q ss_pred             EEecCCCceeeeee-cCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeee---ecccCcCeEEEEec
Q 014475          203 VWSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGS---LSDHSKAVTCLAYS  278 (424)
Q Consensus       203 iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~---~~~~~~~i~~~~~~  278 (424)
                      .++...-....... ...++..+.+.|.  .++....++.+.++++.....       ..+..   -..-...+.+++|+
T Consensus       109 ~~~~~~l~~~~~~~~~~~~~~~~~~~p~--~~~l~~~~~~~~~~~l~~~~~-------~~~~~~v~~~~~~~~~~~v~ws  179 (381)
T d1xipa_         109 SLDLEELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKST-------KQLAQNVTSFDVTNSQLAVLLK  179 (381)
T ss_dssp             EEESSSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCE-------EEEEESEEEEEECSSEEEEEET
T ss_pred             EEEeeccccccccccccccccceecCCc--eeEEEecCCCEEEEEeccCcc-------ccccCCcceEEecCCceEEEEe
Confidence            78776644433332 4566777787764  566777889999999988641       11110   00113557777777


Q ss_pred             C-CCEEEEeCCCCcEEEE-eCCCCcEEEEEeccCCCeeEEEEEecCceeee
Q 014475          279 T-GDLLISGSEDGMVRVW-DPITHNIVRMFRLAKGPVNNILVVRRPLYLNL  327 (424)
Q Consensus       279 ~-~~~l~t~~~dg~i~iw-d~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~  327 (424)
                      + +..++++..+ ...+- ++.....+.........|.++.|-.+..++++
T Consensus       180 ~kgkq~v~~~g~-~~q~k~~i~~~~~~~~p~~~~~~v~sI~WL~~~~F~vv  229 (381)
T d1xipa_         180 DRSFQSFAWRNG-EMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAV  229 (381)
T ss_dssp             TSCEEEEEEETT-EEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEE
T ss_pred             CCcEEEEEeCCC-ceeeccCCCCccccCCCcCCCcceeEEEEecCceEEEE
Confidence            7 6666665322 11111 11100000000012346778888877766654

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.59  E-value=0.53  Score=39.51  Aligned_cols=140  Identities=12%  Similarity=0.075  Sum_probs=84.7

Q ss_pred             CCCCeeEEEECCCCCEEEEecCCCcEEEEEccCc---------ceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEE
Q 014475           79 PAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASG---------RLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIW  149 (424)
Q Consensus        79 ~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~---------~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iw  149 (424)
                      +.....-+++++...++++|+.++ +.|..+..-         ......+..-..|..++|+.+  .++.. .++.+..+
T Consensus        35 P~~~~~LLAVsn~~GLl~aa~~~~-l~V~~t~~l~~~~~~~~~~~~~~~~~~ip~v~~vafs~d--~l~v~-~~~~l~~~  110 (381)
T d1xipa_          35 PFASLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKEIPDVIFVCFHGD--QVLVS-TRNALYSL  110 (381)
T ss_dssp             CSSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEECTTEEEEEEETT--EEEEE-ESSEEEEE
T ss_pred             CccccceEEEeCCCCEEEEECCCE-EEEEEHHHHHHHhhccCCCCcceeccCCCCeEEEEeeCC--EEEEE-eCCCEEEE
Confidence            345678889998888888888774 677665321         001111112236889999744  45544 45578888


Q ss_pred             eCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeee------ecCcceeE
Q 014475          150 SLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNI------VFPSVIDA  223 (424)
Q Consensus       150 d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~------~~~~~i~~  223 (424)
                      +.....           .......-..++..+.+.|    ..++....++.+.++++..++.....      .......+
T Consensus       111 ~~~~l~-----------~~~~~~~~~~~~~~~~~~p----~~~~l~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~  175 (381)
T d1xipa_         111 DLEELS-----------EFRTVTSFEKPVFQLKNVN----NTLVILNSVNDLSALDLRTKSTKQLAQNVTSFDVTNSQLA  175 (381)
T ss_dssp             ESSSTT-----------CEEEEEECSSCEEEEEECS----SEEEEEETTSEEEEEETTTCCEEEEEESEEEEEECSSEEE
T ss_pred             Eeeccc-----------cccccccccccccceecCC----ceeEEEecCCCEEEEEeccCccccccCCcceEEecCCceE
Confidence            875521           1112222334566666655    34566677889999999887643322      23456777


Q ss_pred             EEECCCCCEEEEEe
Q 014475          224 IALDPAEHVFYAGS  237 (424)
Q Consensus       224 ~~~~~~~~~l~~~~  237 (424)
                      ++|++.+..++++.
T Consensus       176 v~ws~kgkq~v~~~  189 (381)
T d1xipa_         176 VLLKDRSFQSFAWR  189 (381)
T ss_dssp             EEETTSCEEEEEEE
T ss_pred             EEEeCCcEEEEEeC
Confidence            88888777777764

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.09  E-value=0.61  Score=37.22  Aligned_cols=65  Identities=12%  Similarity=0.062  Sum_probs=34.1

Q ss_pred             ecCCCEEEEeCCC-----CcEEEEeCCCCcEEEEEeccCCCeeEEEEEecCceeeeccCCCc-----eeeccCCC
Q 014475          277 YSTGDLLISGSED-----GMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNP-----HTSSRRHG  341 (424)
Q Consensus       277 ~~~~~~l~t~~~d-----g~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~d~~-----i~iw~~~~  341 (424)
                      ...+.+++.|+.+     .....+|..+.+....-.........-+...+++.++.|+.++.     +.+||+.+
T Consensus       193 ~~~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~v~~yd~~~  267 (288)
T d1zgka1         193 VLHNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSALGITVHQGRIYVLGGYDGHTFLDSVECYDPDT  267 (288)
T ss_dssp             EETTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSCBCCEEEEEETTT
T ss_pred             ceeeeEEEecCccccccccceeeeeecceeeecccCccCcccceEEEEECCEEEEEecCCCCeecceEEEEECCC
Confidence            3336666666544     34677787765543322222222222333447788888876554     44555553

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.63  E-value=1.3  Score=35.10  Aligned_cols=215  Identities=13%  Similarity=0.158  Sum_probs=95.3

Q ss_pred             eeEEEEECCCCceeeeec-C--CCCeeEEEECCCCCEEEEecC---------CCcEEEEEccCcceee--eeccccCCeE
Q 014475           61 GSILYWSWSKPQVEVKSL-P--AEPIKPIAANSHGTYIAGGGQ---------SGDIYMWEVASGRLLK--KWHAHYRAVT  126 (424)
Q Consensus        61 g~i~vwd~~~~~~~~~~~-~--~~~v~~~~~s~~~~~l~~~~~---------dg~v~iwd~~~~~~~~--~~~~~~~~i~  126 (424)
                      ..+.+||..+.+-..... +  ...-..+.+  ++..++.|+.         -..+.+||..+.+...  .+......-.
T Consensus        19 ~~~~~yd~~t~~W~~~~~~p~~R~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~w~~~~~~p~~r~~~~   96 (288)
T d1zgka1          19 SYLEAYNPSNGTWLRLADLQVPRSGLAGCVV--GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIG   96 (288)
T ss_dssp             CCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCE
T ss_pred             ceEEEEECCCCeEEECCCCCCccceeEEEEE--CCEEEEEeCcccCCCCccccchhhhcccccccccccccccceeccee
Confidence            468899988876433221 1  111122222  5666676653         1357888887654332  2211111122


Q ss_pred             EEEEccCCcEEEEeeCCCcE-----EEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCC---
Q 014475          127 CLVFSEDGSFLISGSEDGCV-----RIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASED---  198 (424)
Q Consensus       127 ~~~~~~~~~~l~s~~~dg~i-----~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d---  198 (424)
                      ++.+  +++.++.++.++..     ..+|..+..-         ............ .++.. ...  ..++.|+.+   
T Consensus        97 ~~~~--~~~i~~~gg~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~r~~-~~~~~-~~~--~~~~~GG~~~~~  161 (288)
T d1zgka1          97 VGVI--DGHIYAVGGSHGCIHHNSVERYEPERDEW---------HLVAPMLTRRIG-VGVAV-LNR--LLYAVGGFDGTN  161 (288)
T ss_dssp             EEEE--TTEEEEECCEETTEECCCEEEEETTTTEE---------EECCCCSSCCBS-CEEEE-ETT--EEEEECCBCSSC
T ss_pred             cccc--ceeeEEecceecccccceeeeeccccCcc---------cccccccccccc-ceeee-eee--cceEecCccccc
Confidence            2222  56666666554443     3345433110         000000000011 11122 233  555555543   


Q ss_pred             --CcEEEEecCCCceeeeeec--CcceeEEEECCCCCEEEEEeCC-----CcEEEEEcCCCCCCCCCcCceeeeeecccC
Q 014475          199 --RTCKVWSLLKGRLLRNIVF--PSVIDAIALDPAEHVFYAGSRD-----GSIYIAALNAESPSTSSYGMHIIGSLSDHS  269 (424)
Q Consensus       199 --~~v~iwd~~~~~~~~~~~~--~~~i~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~  269 (424)
                        ..+..||..+.+....-..  .....+.+.. .+..++.|+.+     .....+|.....       +..+.....-.
T Consensus       162 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~i~GG~~~~~~~~~~~~~~~~~~~-------~~~~~~~p~~r  233 (288)
T d1zgka1         162 RLNSAECYYPERNEWRMITAMNTIRSGAGVCVL-HNCIYAAGGYDGQDQLNSVERYDVETET-------WTFVAPMKHRR  233 (288)
T ss_dssp             BCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TTEEEEECCBCSSSBCCCEEEEETTTTE-------EEECCCCSSCC
T ss_pred             ccceEEEeeccccccccccccccccccccccce-eeeEEEecCccccccccceeeeeeccee-------eecccCccCcc
Confidence              3477888776543322221  1111222222 34555555443     256677776643       11111111111


Q ss_pred             cCeEEEEecCCCEEEEeCCCC-----cEEEEeCCCCc
Q 014475          270 KAVTCLAYSTGDLLISGSEDG-----MVRVWDPITHN  301 (424)
Q Consensus       270 ~~i~~~~~~~~~~l~t~~~dg-----~i~iwd~~~~~  301 (424)
                      ... +++...+++++.|+.++     .|.+||+.+.+
T Consensus       234 ~~~-~~~~~~~~l~v~GG~~~~~~~~~v~~yd~~~~~  269 (288)
T d1zgka1         234 SAL-GITVHQGRIYVLGGYDGHTFLDSVECYDPDTDT  269 (288)
T ss_dssp             BSC-EEEEETTEEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred             cce-EEEEECCEEEEEecCCCCeecceEEEEECCCCE
Confidence            111 23333477888877544     37788887643

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=93.56  E-value=1.6  Score=35.92  Aligned_cols=177  Identities=17%  Similarity=0.180  Sum_probs=99.5

Q ss_pred             eecCCCccccCCC-----------CceeEEEEECCCCceeeeec--CC-------CCeeEEEE--CCCCC-EEEEe---c
Q 014475           46 FLASSQLREQPSA-----------SSGSILYWSWSKPQVEVKSL--PA-------EPIKPIAA--NSHGT-YIAGG---G   99 (424)
Q Consensus        46 ~~~~~~~l~~~~~-----------~~g~i~vwd~~~~~~~~~~~--~~-------~~v~~~~~--s~~~~-~l~~~---~   99 (424)
                      ..|+|..+++++.           ..|.|.++|+.+........  ..       -....+..  .++|. +|++.   .
T Consensus        42 ~~~dg~~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~~L~vvnH~~  121 (340)
T d1v04a_          42 ILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPG  121 (340)
T ss_dssp             ECTTSEEEEEECCCC--------CCCCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCEEEEEEECST
T ss_pred             ECCCCcEEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCcEEEEEEeccC
Confidence            5677776666542           12899999987654332211  11       12234433  44555 34443   2


Q ss_pred             CCCcEEEEEccCccee----eeec-cccCCeEEEEEccCCcEEEEee-----------------CCCcEEEEeCCcccch
Q 014475          100 QSGDIYMWEVASGRLL----KKWH-AHYRAVTCLVFSEDGSFLISGS-----------------EDGCVRIWSLLTVFEE  157 (424)
Q Consensus       100 ~dg~v~iwd~~~~~~~----~~~~-~~~~~i~~~~~~~~~~~l~s~~-----------------~dg~i~iwd~~~~~~~  157 (424)
                      ...+|.+|++......    .++. ......+.+.+..++.+++|-.                 ..+.+.-||...    
T Consensus       122 ~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~~~----  197 (340)
T d1v04a_         122 SSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPND----  197 (340)
T ss_dssp             TCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEECSSC----
T ss_pred             CCceeEEEEEeCCCCeEEEEeecCCccccCccceEEecCCCEEEecCccCcChhhhhhhHhhcCCceeEEEEcCCc----
Confidence            4567888888644321    1221 1234578999988888888731                 112333344311    


Q ss_pred             hcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCcee---eeeecCcceeEEEECCCCCEEE
Q 014475          158 CESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLL---RNIVFPSVIDAIALDPAEHVFY  234 (424)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~---~~~~~~~~i~~~~~~~~~~~l~  234 (424)
                                .......-...+.+++++++. ..+++-+..+.|+.|++.....+   ..+..+...-.+.+.+.+..++
T Consensus       198 ----------~~~~~~~l~~pNGI~~s~d~~-~lyVa~t~~~~i~~y~~~~~~~l~~~~~~~l~~~pDNi~~d~~~g~lw  266 (340)
T d1v04a_         198 ----------VRVVAEGFDFANGINISPDGK-YVYIAELLAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGDLW  266 (340)
T ss_dssp             ----------EEEEEEEESSEEEEEECTTSS-EEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSEEEEEEECTTTCCEE
T ss_pred             ----------eEEEcCCCCccceeEECCCCC-EEEEEeCCCCeEEEEEeCCCcccceEEEecCCCCCCccEEecCCCEEE
Confidence                      111222234578899999874 45566667888999998754322   2333567777888887544444


Q ss_pred             EEe
Q 014475          235 AGS  237 (424)
Q Consensus       235 ~~~  237 (424)
                      +++
T Consensus       267 va~  269 (340)
T d1v04a_         267 VGC  269 (340)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            444

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=92.91  E-value=3  Score=37.20  Aligned_cols=56  Identities=13%  Similarity=0.087  Sum_probs=43.9

Q ss_pred             CCcEEEEeCCCCcEEEEEeccCCCeeEEEEEecCceeeeccCCCceeeccCCCCCCC
Q 014475          289 DGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGSQLP  345 (424)
Q Consensus       289 dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~d~~i~iw~~~~~~~~  345 (424)
                      .|.|.-+|+.+|+.+-+...+ .++..-..+..+..+++|+.||.++.+|..+++..
T Consensus       465 ~G~l~AiD~~TG~i~W~~~~~-~p~~~g~lstagglVF~Gt~dg~l~A~Da~TGe~L  520 (582)
T d1flga_         465 VGSLRAMDPVSGKVVWEHKEH-LPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKEL  520 (582)
T ss_dssp             SEEEEEECTTTCCEEEEEEES-SCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred             CCeEEEEcCCCCcEEeecCCC-CCCccceeEEcCCeEEEeCCCCeEEEEECCCCcEe
Confidence            367888999999999887744 34444345567778888999999999999998764

>d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Acylamino-acid-releasing enzyme, N-terminal donain
domain: Acylamino-acid-releasing enzyme, N-terminal donain
species: Aeropyrum pernix [TaxId: 56636]

Probab=92.84  E-value=1.4  Score=33.13  Aligned_cols=215  Identities=11%  Similarity=0.098  Sum_probs=112.9

Q ss_pred             EEEeecCCCCCceEEEeCCCCceEEEeeCCCCCCCceEEec--ceeecCCCccccCCCCceeEEEEECCCCceeeeecCC
Q 014475            3 LLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVG--QRFLASSQLREQPSASSGSILYWSWSKPQVEVKSLPA   80 (424)
Q Consensus         3 ~~lat~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~--~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~~~~~   80 (424)
                      .+|+++. ..|.+.++-+..++.++--+.   +...+..-.  ..|.+--+-+.-+..- ..|.+-++..+.........
T Consensus        27 ~ll~~~~-seG~vni~~l~g~~~vkLtke---PI~~~~~Pk~~ldfi~f~RDV~kGkE~-Hai~~~Nlk~~GEE~~i~sp  101 (313)
T d2hu7a1          27 KLLVVGF-SEGSVNAYLYDGGETVKLNRE---PINSVLDPHYGVGRVILVRDVSKGAEQ-HALFKVNTSRPGEEQRLEAV  101 (313)
T ss_dssp             EEEEEEE-ETTEEEEEEESSSSCEECCSS---CCSEECEECTTBSEEEEEEECSTTSCC-EEEEEEETTSTTCEEECTTS
T ss_pred             cEEEEEe-ccceEEEEEEeCCEEEEEecc---cccCcCCCccCcceEEEEeehhcCcce-eeEEEEccCCCCeeeEecCC
Confidence            4677776 789999999988877653221   211111100  0011111111122222 56666676633333333333


Q ss_pred             C--CeeEEEECCCCCEEEEecCCCcEEEEEccCcceee--eecc-------ccCCeEEEEEc-cCCcEEEEeeC-CCcEE
Q 014475           81 E--PIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLK--KWHA-------HYRAVTCLVFS-EDGSFLISGSE-DGCVR  147 (424)
Q Consensus        81 ~--~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~--~~~~-------~~~~i~~~~~~-~~~~~l~s~~~-dg~i~  147 (424)
                      .  .|.+++.. +.+..++|+......+|-++.|+...  .+.+       ....|..+.+. ++..-++++.. .|.++
T Consensus       102 k~vRI~S~~yd-dk~vvF~Gased~~~LYviegGklrkL~~vPpFsFVtDI~~d~I~G~g~~~g~~~sfF~adl~SG~lr  180 (313)
T d2hu7a1         102 KPMRILSGVDT-GEAVVFTGATEDRVALYALDGGGLRELARLPGFGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLR  180 (313)
T ss_dssp             CSBEEEEEEEC-SSCEEEEEECSSCEEEEEEETTEEEEEEEESSCEEEEEEETTEEEEEEEEETTEEEEEEEETTTEEEE
T ss_pred             ceEEEEEeeec-CceEEEecccCCceEEEEEeCCceeeeccCCCcceEEeccCCeEEEEeeecCCcceEEEEecccCCEE
Confidence            3  45555554 45566777777778889888775433  2222       12334444443 33334555555 77788


Q ss_pred             EEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeC---CCcEEEEecCCCceeeee-e-------
Q 014475          148 IWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASE---DRTCKVWSLLKGRLLRNI-V-------  216 (424)
Q Consensus       148 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~---d~~v~iwd~~~~~~~~~~-~-------  216 (424)
                      +++...                      +.++.....+..   .+++..+   .....-+|+++++....- .       
T Consensus       181 i~tpke----------------------GS~~~ay~~~gn---KV~sdyEt~gEsywit~D~~s~~yerve~P~kd~~sy  235 (313)
T d2hu7a1         181 VFDSGE----------------------GSFSSASISPGM---KVTAGLETAREARLVTVDPRDGSVEDLELPSKDFSSY  235 (313)
T ss_dssp             EECCSS----------------------EEEEEEEECTTS---CEEEEEEESSCEEEEEECTTTCCEEECCCSSCHHHHH
T ss_pred             EecCCC----------------------CcccceeEccCc---eeeeccCCCCceEEEEEecccCceeeeecCcccceee
Confidence            777643                      233333333332   2222221   112224477665432211 1       


Q ss_pred             cCcceeEEEECCCCCEEEEEeCCCcEEEEEcC
Q 014475          217 FPSVIDAIALDPAEHVFYAGSRDGSIYIAALN  248 (424)
Q Consensus       217 ~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~  248 (424)
                      .+-.|.-+-+.|++++++++-.||.-.++.-.
T Consensus       236 ~p~~I~~~~Y~Pdd~L~iiakrdG~s~lF~nG  267 (313)
T d2hu7a1         236 RPTAITWLGYLPDGRLAVVARREGRSAVFIDG  267 (313)
T ss_dssp             CCSEEEEEEECTTSCEEEEEEETTEEEEEETT
T ss_pred             cceEEEeeeeCCCCcEEEEEecCCchheeecc
Confidence            23456667799999999999999998888643

>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: RCC1/BLIP-II
family: beta-lactamase inhibitor protein-II, BLIP-II
domain: beta-lactamase inhibitor protein-II, BLIP-II
species: Streptomyces exfoliatus [TaxId: 1905]

Probab=92.49  E-value=1.9  Score=34.00  Aligned_cols=241  Identities=15%  Similarity=0.052  Sum_probs=117.1

Q ss_pred             eeEEEEECCC--CceeeeecCCCCeeEEEECCCCCEEEEecCCCcEEEEEccCcceeeeeccccCCeEEEEEccCCcEEE
Q 014475           61 GSILYWSWSK--PQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLI  138 (424)
Q Consensus        61 g~i~vwd~~~--~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~  138 (424)
                      .+|+.|-...  ............|..++-..  .+.++-. ||.|..|-....-.+-.-......|..+.--  ..+.+
T Consensus         4 ~sv~~WG~~~~~~~~~~~~~~~~~i~~va~G~--~h~~al~-dG~v~~wG~N~~GQlG~~~~~~~~v~~v~~G--~~~~~   78 (273)
T d1jtdb_           4 TSVVAWGGNNDWGEATVPAEAQSGVDAIAGGY--FHGLALK-GGKVLGWGANLNGQLTMPAATQSGVDAIAAG--NYHSL   78 (273)
T ss_dssp             SEEEEESSCCSSSTTCCCGGGSSSEEEEEECS--SEEEEEE-TTEEEEEECCTTSTTSCCGGGGSCCCEEEEC--SSEEE
T ss_pred             CEEEEECCCCCCCceeccccCCCCcEEEEccC--CEEEEEE-CCEEEEEeCCCCCceeeeecccccceEEecC--CCcee
Confidence            4677786432  22222233345688887642  2333334 8999999876543333222334456666543  22222


Q ss_pred             EeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeee-ec
Q 014475          139 SGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNI-VF  217 (424)
Q Consensus       139 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~-~~  217 (424)
                      . -.||.+..|......+..         .  .......+..+.....   ..+ . -.|+.+..|.-......... ..
T Consensus        79 a-l~dg~v~~wG~~~~gq~~---------~--~~~~~~~~~~i~~~~~---~~~-~-~~dg~v~~~g~~~~~~~~~~~~~  141 (273)
T d1jtdb_          79 A-LKDGEVIAWGGNEDGQTT---------V--PAEARSGVDAIAAGAW---ASY-A-LKDGKVIAWGDDSDGQTTVPAEA  141 (273)
T ss_dssp             E-EETTEEEEEECCTTSTTC---------C--CGGGGSSCCEEEEETT---EEE-E-EETTEEEEEECCTTSTTSCCGGG
T ss_pred             e-eeeeeeeccCCCcceeec---------c--ccccccceeEEeeecc---ccc-c-cccccceecccCCCCceeeeccC
Confidence            2 248999999864321100         0  0011122333333222   222 2 24788998874432221111 12


Q ss_pred             CcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecCCCEEEEeCCCCcEEEEeC
Q 014475          218 PSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTGDLLISGSEDGMVRVWDP  297 (424)
Q Consensus       218 ~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~t~~~dg~i~iwd~  297 (424)
                      ...+..++-.  .. ......++.++.|-.....+.         .........|..++......++.  .||.|+-|=.
T Consensus       142 ~~~v~~~~~~--~~-~~~~~~~g~~~~~G~~~~g~~---------~~~~~~~~~v~~Is~G~~h~~~l--~dG~v~~WG~  207 (273)
T d1jtdb_         142 QSGVTALDGG--VY-TALAVKNGGVIAWGDNYFGQT---------TVPAEAQSGVDDVAGGIFHSLAL--KDGKVIAWGD  207 (273)
T ss_dssp             GSSEEEEEEC--SS-EEEEEETTEEEEEECCTTSTT---------SCCGGGSSSEEEEEECSSEEEEE--ETTEEEEEEC
T ss_pred             CceEEEEecc--ce-eeeeecccceeEeecccCCcc---------cccccccCCccceeccceeeEEE--ecCcEEEcCC
Confidence            2344444432  22 233345788888876554321         11112345677776654333333  2799999965


Q ss_pred             CCCcEEEEEeccCCCeeEEEEEecCceeeeccCCCceeeccCC
Q 014475          298 ITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRH  340 (424)
Q Consensus       298 ~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~d~~i~iw~~~  340 (424)
                      .....+.........|..++-.... .++.  .||.|..|-..
T Consensus       208 n~~Gql~~~~~~~~~v~~I~~G~~~-~~~l--~~g~v~~WG~~  247 (273)
T d1jtdb_         208 NRYKQTTVPTEALSGVSAIASGEWY-SLAL--KNGKVIAWGSS  247 (273)
T ss_dssp             CTTSTTCCCGGGGSSCCEEEECSSC-EEEE--ETTEEEEESTT
T ss_pred             CCCCccCCCccCCCCcEEEEeCcce-EEEE--ECCEEEEECCC
Confidence            4322121111223456777654332 3333  48999999654

>d1wp5a_ b.68.10.1 (A:) Topoisomerase IV subunit A, ParC, C-terminal domain {Bacillus stearothermophilus [TaxId: 1422]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: GyrA/ParC C-terminal domain-like
family: GyrA/ParC C-terminal domain-like
domain: Topoisomerase IV subunit A, ParC, C-terminal domain
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=92.46  E-value=2.3  Score=34.67  Aligned_cols=242  Identities=8%  Similarity=-0.023  Sum_probs=130.2

Q ss_pred             CCCCEEEEecCCCcEEEEEccCcc----eeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhccccccc
Q 014475           90 SHGTYIAGGGQSGDIYMWEVASGR----LLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASH  165 (424)
Q Consensus        90 ~~~~~l~~~~~dg~v~iwd~~~~~----~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~  165 (424)
                      |+...+++-+.+|.|+--.+.+.+    .-..++. .+.+..+........|+.-+..|.++.-..........  ....
T Consensus         3 ~~E~v~v~lS~~GyiKR~~~~~~~~~~~~~~~~k~-~D~v~~~~~~~t~d~ll~fT~~Grvy~l~v~eiP~~~~--~s~G   79 (323)
T d1wp5a_           3 ASEDVIVTVTKDGYVKRTSLRSYAASNGQDFAMKD-TDRLLAMLEMNTKDVLLLFTNKGNYLYCPVHELPDIRW--KDLG   79 (323)
T ss_dssp             SCCEEEEEEETTCEEEEEEHHHHHHTTTCCCCCCT-TCCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCT--TSCC
T ss_pred             CCCCEEEEEeCCCeEEEeeHHHhhhcCCCCCcccC-CceEEEEEEEcCCCEEEEEecCCEEEEEeeccCccccc--cccc
Confidence            566778888899999866554321    1111222 33455554444445566556778776655433221110  0111


Q ss_pred             ceEEeec--CCcCceeEE-EEEEcCceeEEEEEeCCCcEEEEecCCCc--------eeeeeecCcceeEEEECCCCCEEE
Q 014475          166 LYLHSFT--GHTLRITDI-VIGYGGVSATIVSASEDRTCKVWSLLKGR--------LLRNIVFPSVIDAIALDPAEHVFY  234 (424)
Q Consensus       166 ~~~~~~~--~~~~~i~~~-~~~~~~~~~~l~~~~~d~~v~iwd~~~~~--------~~~~~~~~~~i~~~~~~~~~~~l~  234 (424)
                      .++..+-  .....+..+ ...+.....+++..+..|.++..++....        ....+.....+..+........++
T Consensus        80 ~pi~~ll~l~~~e~ii~~~~~~~~~~~~~l~~~Tk~G~iKr~~l~~f~~~~~~~g~~~i~L~~~D~l~~v~~~~~~~~i~  159 (323)
T d1wp5a_          80 QHIANIIPIDRDEEIIKAIPINDFELNGYFLFVTRNGMVKKTELKHYKAQRYSKPLTGINLKNDDQVVDVHLTDGMNELF  159 (323)
T ss_dssp             EEGGGTSCCCTTCCEEEEEEESCTTSSCEEEEEETTSEEEEEEGGGGCCSCCSSCEECSCCCTTCCEEEEEEECSCSEEE
T ss_pred             ccceeeecccCCcceEEEeeccccccceeEEEEeehhheeeccHHHhhhhhccchhhhccccccccccceeccCCCeEEE
Confidence            1221111  122333333 33322223688999999999999874321        112233556677777777777899


Q ss_pred             EEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEE-EecC-CCEEEEeCCCCcEEEEeCCCC-------cEEEE
Q 014475          235 AGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCL-AYST-GDLLISGSEDGMVRVWDPITH-------NIVRM  305 (424)
Q Consensus       235 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~~~-~~~l~t~~~dg~i~iwd~~~~-------~~~~~  305 (424)
                      ..+..|.+..++...-.........-....+.. ...+.++ ...+ +..++..+..|..+.-.+...       +-+..
T Consensus       160 l~t~~G~~lrf~~~~vr~~gr~a~GV~~ikL~~-~D~vv~~~~~~~~~~~ll~~T~~G~gKr~~~~e~~~~~RggkGv~~  238 (323)
T d1wp5a_         160 LVTHNGYALWFDESEVSIVGVRAAGVKGMNLKE-GDYIVSGQLITSKDESIVVATQRGAVKKMKLTEFEKATRAKRGVVI  238 (323)
T ss_dssp             EEETTSEEEEEEGGGSCBCCSSCCCEECCCCCT-TCCEEEEEEECCTTCEEEEEETTSEEEEEEGGGSCCCCTTSCCEEC
T ss_pred             EEEecceeeEeecccccccCccccccccccccc-ccccchhhhccccccceeeeeeeheeecccchhhcccccccccccc
Confidence            999999999999876543322211111222322 2344443 4444 778888888888877654332       11222


Q ss_pred             Ee---ccCCCeeEEEEEecCceeeeccCCCcee
Q 014475          306 FR---LAKGPVNNILVVRRPLYLNLGSFSNPHT  335 (424)
Q Consensus       306 ~~---~~~~~v~~l~~s~~~~~l~~~~~d~~i~  335 (424)
                      ++   .....|..+....+...|+..+..|.+.
T Consensus       239 ~k~~k~~~~~v~~~~~~~~~d~l~l~T~~g~~~  271 (323)
T d1wp5a_         239 LRELKANPHRISGFVVAQDSDTIYLQTEKSFIE  271 (323)
T ss_dssp             SCCCSSSCCCEEEEEEECTTCEEEEEETTSCEE
T ss_pred             ccccccccceeeeeEecCCCCEEEEEeCCCEEE
Confidence            22   1123455666666666666666666654

>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: RCC1/BLIP-II
family: beta-lactamase inhibitor protein-II, BLIP-II
domain: beta-lactamase inhibitor protein-II, BLIP-II
species: Streptomyces exfoliatus [TaxId: 1905]

Probab=88.81  E-value=4.4  Score=31.80  Aligned_cols=203  Identities=16%  Similarity=0.115  Sum_probs=97.8

Q ss_pred             ceeEEEEECCCCc-eeeeecCCCCeeEEEECCCCCEEEEecCCCcEEEEEccCcceeeeeccccCCeEEEEEccCCcEEE
Q 014475           60 SGSILYWSWSKPQ-VEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLI  138 (424)
Q Consensus        60 ~g~i~vwd~~~~~-~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~  138 (424)
                      ||.|..|-..... +-........|..++.-.. ..++.  .||.+..|.....-...........+..+.....  ..+
T Consensus        43 dG~v~~wG~N~~GQlG~~~~~~~~v~~v~~G~~-~~~al--~dg~v~~wG~~~~gq~~~~~~~~~~~~~i~~~~~--~~~  117 (273)
T d1jtdb_          43 GGKVLGWGANLNGQLTMPAATQSGVDAIAAGNY-HSLAL--KDGEVIAWGGNEDGQTTVPAEARSGVDAIAAGAW--ASY  117 (273)
T ss_dssp             TTEEEEEECCTTSTTSCCGGGGSCCCEEEECSS-EEEEE--ETTEEEEEECCTTSTTCCCGGGGSSCCEEEEETT--EEE
T ss_pred             CCEEEEEeCCCCCceeeeecccccceEEecCCC-ceeee--eeeeeeccCCCcceeeccccccccceeEEeeecc--ccc
Confidence            3999999866432 2222223445666654322 22333  4899999986433222211222334455554322  222


Q ss_pred             EeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCC-ceeeeeec
Q 014475          139 SGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKG-RLLRNIVF  217 (424)
Q Consensus       139 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~-~~~~~~~~  217 (424)
                      . -.|+.+..|.-.......         .  .......|..++-  ..  ..++ ...++.+..|..... +.......
T Consensus       118 ~-~~dg~v~~~g~~~~~~~~---------~--~~~~~~~v~~~~~--~~--~~~~-~~~~g~~~~~G~~~~g~~~~~~~~  180 (273)
T d1jtdb_         118 A-LKDGKVIAWGDDSDGQTT---------V--PAEAQSGVTALDG--GV--YTAL-AVKNGGVIAWGDNYFGQTTVPAEA  180 (273)
T ss_dssp             E-EETTEEEEEECCTTSTTS---------C--CGGGGSSEEEEEE--CS--SEEE-EEETTEEEEEECCTTSTTSCCGGG
T ss_pred             c-cccccceecccCCCCcee---------e--eccCCceEEEEec--cc--eeee-eecccceeEeecccCCcccccccc
Confidence            2 248899999754311100         0  0011122332221  21  2222 334678888865432 22222234


Q ss_pred             CcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecCCCEEEEeCCCCcEEEEeC
Q 014475          218 PSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTGDLLISGSEDGMVRVWDP  297 (424)
Q Consensus       218 ~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~t~~~dg~i~iwd~  297 (424)
                      ...|..++.....  .+.- .||.|+.|=.........         .......|..++-.....++.  .||.|..|-.
T Consensus       181 ~~~v~~Is~G~~h--~~~l-~dG~v~~WG~n~~Gql~~---------~~~~~~~v~~I~~G~~~~~~l--~~g~v~~WG~  246 (273)
T d1jtdb_         181 QSGVDDVAGGIFH--SLAL-KDGKVIAWGDNRYKQTTV---------PTEALSGVSAIASGEWYSLAL--KNGKVIAWGS  246 (273)
T ss_dssp             SSSEEEEEECSSE--EEEE-ETTEEEEEECCTTSTTCC---------CGGGGSSCCEEEECSSCEEEE--ETTEEEEEST
T ss_pred             cCCccceecccee--eEEE-ecCcEEEcCCCCCCccCC---------CccCCCCcEEEEeCcceEEEE--ECCEEEEECC
Confidence            5567777654332  2222 379999997655432111         111224466676554444444  3899999954


Q ss_pred             C
Q 014475          298 I  298 (424)
Q Consensus       298 ~  298 (424)
                      .
T Consensus       247 ~  247 (273)
T d1jtdb_         247 S  247 (273)
T ss_dssp             T
T ss_pred             C
Confidence            3

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=87.78  E-value=7.4  Score=33.19  Aligned_cols=54  Identities=11%  Similarity=0.081  Sum_probs=39.0

Q ss_pred             CCCeeEEEECCCCCEEEEecCCCcEEEEEccCcceee--eec------cccCCeEEEEEccC
Q 014475           80 AEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLK--KWH------AHYRAVTCLVFSED  133 (424)
Q Consensus        80 ~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~--~~~------~~~~~i~~~~~~~~  133 (424)
                      -...++|+|.||++++++--..|.|++++..+++...  .+.      .-......|+|+|+
T Consensus        26 L~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pd   87 (450)
T d1crua_          26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPD   87 (450)
T ss_dssp             CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTT
T ss_pred             CCCceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCC
Confidence            3567899999999988886557999999887764432  111      12356788999984

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=85.74  E-value=9.5  Score=32.44  Aligned_cols=60  Identities=8%  Similarity=0.032  Sum_probs=40.3

Q ss_pred             CcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeee---------cCcceeEEEECCC---CCEEEE
Q 014475          174 HTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV---------FPSVIDAIALDPA---EHVFYA  235 (424)
Q Consensus       174 ~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~---------~~~~i~~~~~~~~---~~~l~~  235 (424)
                      .-...++|+|.|++  +++++--..|.|++++..+++......         .......++++|+   ..+++.
T Consensus        25 ~L~~P~~la~~pdg--~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pdf~~n~~iYv   96 (450)
T d1crua_          25 NLNKPHALLWGPDN--QIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYI   96 (450)
T ss_dssp             CCSSEEEEEECTTS--CEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEE
T ss_pred             CCCCceEEEEeCCC--eEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCCCccCCEEEE
Confidence            34466799999997  666655457999999987765433222         1345678999994   445544

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=84.74  E-value=8.8  Score=31.20  Aligned_cols=159  Identities=13%  Similarity=0.064  Sum_probs=89.7

Q ss_pred             eeEEEECCCCCEEEEecC------------CCcEEEEEccCcceee-eeccc-------cCCeEEEEE--ccCCc-EEEE
Q 014475           83 IKPIAANSHGTYIAGGGQ------------SGDIYMWEVASGRLLK-KWHAH-------YRAVTCLVF--SEDGS-FLIS  139 (424)
Q Consensus        83 v~~~~~s~~~~~l~~~~~------------dg~v~iwd~~~~~~~~-~~~~~-------~~~i~~~~~--~~~~~-~l~s  139 (424)
                      ...+...|+|..+++++.            .|.|.++|+.+.+... .+.-.       .-....+..  .+++. +|++
T Consensus        37 ~EDi~~~~dg~~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~~L~v  116 (340)
T d1v04a_          37 SEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLV  116 (340)
T ss_dssp             CCEEEECTTSEEEEEECCCC--------CCCCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCEEEEE
T ss_pred             cceEEECCCCcEEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCcEEEEE
Confidence            445777788877766532            4889999987653321 22111       112344444  33454 2333


Q ss_pred             ee---CCCcEEEEeCCcccchhcccccccceEEeecC-CcCceeEEEEEEcCceeEEEEEeC---------------CCc
Q 014475          140 GS---EDGCVRIWSLLTVFEECESQRASHLYLHSFTG-HTLRITDIVIGYGGVSATIVSASE---------------DRT  200 (424)
Q Consensus       140 ~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~l~~~~~---------------d~~  200 (424)
                      ..   ...+|-+|++....       .....+..... .....+++++..++  .+++|-..               -+.
T Consensus       117 vnH~~~~~~ieif~~~~~~-------~~l~~~~~v~~~~~~~pNDv~~~~~g--~fy~Tnd~~~~~~~~~~~e~~~~~~~  187 (340)
T d1v04a_         117 VNHPGSSSTVEVFKFQEEE-------KSLLHLKTIRHKLLPSVNDIVAVGPE--HFYATNDHYFIDPYLKSWEMHLGLAW  187 (340)
T ss_dssp             EECSTTCCEEEEEEEETTT-------TEEEEEEEECCTTCSSEEEEEEEETT--EEEEEESCSCCSHHHHHHHHHTTCCC
T ss_pred             EeccCCCceeEEEEEeCCC-------CeEEEEeecCCccccCccceEEecCC--CEEEecCccCcChhhhhhhHhhcCCc
Confidence            32   34567777774311       11222233322 23457888888887  77777311               123


Q ss_pred             EEEEecCCCceeeeeecCcceeEEEECCCCCEEEEE-eCCCcEEEEEcCCC
Q 014475          201 CKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAG-SRDGSIYIAALNAE  250 (424)
Q Consensus       201 v~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~  250 (424)
                      ..+|..+.++.......-...+.++++|++++|+++ +..++|+.|++...
T Consensus       188 g~v~~~~~~~~~~~~~~l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~  238 (340)
T d1v04a_         188 SFVTYYSPNDVRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHAN  238 (340)
T ss_dssp             EEEEEECSSCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTT
T ss_pred             eeEEEEcCCceEEEcCCCCccceeEECCCCCEEEEEeCCCCeEEEEEeCCC
Confidence            344444444443333344678899999999887765 46778999999764