Citrus Sinensis ID: 014481

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420---
Protein Sequence
MAKLTLGAEKFFVFAHNTSSGRLVFAKRNSSKRQKFHLYPSEGCSRLRVSCSIKEKENVKEETDKFDEVLTGLRVDEPGSVSGFDSESGQVRGTEEVGRASYWPPWKNIPQRYKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKEAVHSCVSQCFL
Secondary Structure (PSIPRED)
ccccccccccEEEEcccccccccccccccccccccccccccccccccEEEEccccccccccccccHHHHcccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHccHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
ccEEEEEcccEEEccccccccEEEEEcccccccccEEEEcccccEEEEEEccEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHccHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHcccccccccccccccccccHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEEHHHHHHHHHHcc
Coil and Loop (DISEMBL)
MAKLTLGAEKFFVFAhntssgrlvfakrnsskrqkfhlypsegcsrlrvscsikekenvkeetdkfdevltglrvdepgsvsgfdsesgqvrgteevgrasywppwknipqrykligTTSLAFVICNMDKVNLSVAIIpmshrfgwnssvaglvqssffwgyalsqlpggwlakifggrkvLQTGVLIWSLATALLPLLAGFMPGLVLSRVLVGigegvspsaaTDLIarsipleersRAVSFVFGGLsfgsvaglllappiienlgweSVFYIFGLLGIawfsgfkilqegetsngatlaprsnyINMKKSLSASLEEMGEslkdvpwkaIFRSKAVWAMIYAHFcgswghytclswlptyfseelslnlTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKEAVHscvsqcfl
Flexible Loop (DISEMBL)
MAKLTLGAEKFFvfahntssgrlvfakrnsskrqkfhlypsegcsrlrvscsikekenvkeetdkfdevltglrvdepgsvsgfdsesgqvrgteevgrasywppwkniPQRYKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFSGFKILQEGETsngatlaprsnYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKEAVHSCVSQCFL
Low Complexity Region (SEG)
MAKLTLGAEKFFVFAHNTSSGRLVFAKRNSSKRQKFHLYPSEGCSRLRVSCSIKEKENVKEETDKFDEVLTGLRVDEPGSVSGFDSESGQVRGTEEVGRASYWPPWKNIPQRYKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKEAVHSCVSQCFL
Disordered region (IsUnstruct)
*****LGAEKFFVFAHNTSSGRLVFA*********FHLYP**GCSRLRVS**********************************************VGRASYWPPWKNIPQRYKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFSGFKILQE********************************LKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKEAVHSCVSQC**
Disordered Region (DISOPRED)
**********F********************************************************************************************PPWKNIPQRYKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFSGFKILQ**************************************WKAIFRSKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKEAVHSCVSQCFL
Disordered Region (DISEMBL)
MAKLTLGAEKFFVFAHNTSSGRLVFAKRNSSKRQKFHLYPSEGCSRLRVSCSIKEKENVKEETDKFDEVLTGLRVDEPGSVSGFDSESGQVRGTEEVGRASYWPPWKNIPQRYKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKEAVHSCVSQCFL
Disordered Region (DISPRO)
*AKLTLGAEKFFVFAHNTSSGRLVFAKRNSSKRQKFHLYPSEGCSRLRVSCSIKEKE*********************************************WPPWKNIPQRYKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKEAVHSCVSQCFL
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAKLTLGAEKFFVFAHNTSSGRLVFAKRNSSKRQKFHLYPSEGCSRLRVSCSIKEKENVKEETDKFDEVLTGLRVDEPGSVSGFDSESGQVRGTEEVGRASYWPPWKNIPQRYKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKEAVHSCVSQCFL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	423	2.2.26 [Sep-21-2011]
Q3E9A0	517	Probable anion transporte	yes	no	0.907	0.742	0.630	1e-141
Q0IZQ3	471	Probable anion transporte	yes	no	0.567	0.509	0.664	7e-89
Q652N5	591	Probable anion transporte	yes	no	0.827	0.592	0.372	3e-67
Q9SDI4	529	Probable anion transporte	no	no	0.704	0.563	0.409	5e-66
O82390	512	Sodium-dependent phosphat	no	no	0.754	0.623	0.384	3e-65
Q8GX78	541	Probable anion transporte	no	no	0.851	0.665	0.362	9e-64
Q8W0H5	519	Probable anion transporte	no	no	0.709	0.578	0.391	3e-47
Q7XJR2	512	Probable anion transporte	no	no	0.692	0.572	0.365	2e-46
Q66GI9	533	Probable anion transporte	no	no	0.702	0.557	0.364	2e-44
Q53WP9	535	Probable anion transporte	no	no	0.704	0.557	0.340	7e-41

>sp|Q3E9A0|ANTR6_ARATH Probable anion transporter 6, chloroplastic OS=Arabidopsis thaliana GN=ANTR6 PE=2 SV=1

 Score =  502 bits (1292), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 264/419 (63%), Positives = 302/419 (72%), Gaps = 35/419 (8%)

Query: 1   MAKLTLGAEKFFVFAHNTSSGRLVFAKRNS--SKRQKFHLYPSEGCSRLRVSCSIKEKEN 58
           MA+LTL         HN      ++A +    S    F  +      + RV CS    E 
Sbjct: 1   MARLTLRP-------HNHFFSSPIYAHKQPFLSVYTIFPHHHQNPLIKSRVKCSASGTER 53

Query: 59  VKEET-----DKFDEVLTGLRVDEPGSVSGFDSESGQVRGTEEVGRASYWPPWKNIPQRY 113
           V+E       D  ++    L + E  S               E G    WPPWKNIPQRY
Sbjct: 54  VRESKKLPPKDPIEDPKPQLPIPEVLST--------------ETGFEQNWPPWKNIPQRY 99

Query: 114 KLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLA 173
           KLIG TSLAFVICNMDKVNLS+AIIPMSH+FGW+SSVAGLVQSSFFWGYALSQLPGGWL+
Sbjct: 100 KLIGATSLAFVICNMDKVNLSIAIIPMSHQFGWSSSVAGLVQSSFFWGYALSQLPGGWLS 159

Query: 174 KIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIP 233
           KIFGGRKVL+ GV  WS ATAL+PLLAGFMPGL+ SR+LVGIGEGVSPSAATDLIAR+IP
Sbjct: 160 KIFGGRKVLEIGVFTWSFATALVPLLAGFMPGLIFSRILVGIGEGVSPSAATDLIARTIP 219

Query: 234 LEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFSGFKILQEGE 293
           ++ERSRAV FVFGGLS GSV GLLLAPPIIE   WESVFY+FGLLG+ WF GF+ L E E
Sbjct: 220 VKERSRAVGFVFGGLSLGSVMGLLLAPPIIETFNWESVFYLFGLLGVGWFVGFQFLNEEE 279

Query: 294 TSNGATLAPRSNYINM-KKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGH 352
            S       + N I+   KS +A+ EE+G SLK++PWK+ F+S AVWAMIY HFCGSWGH
Sbjct: 280 VSY------KGNEISTSHKSENATKEELGSSLKEIPWKSFFQSPAVWAMIYTHFCGSWGH 333

Query: 353 YTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRK 411
           YTCLSWLPTYFSE LSLNLTEAAWVSILPPLAS++VTS+A+QFAD LI  GV+TT VRK
Sbjct: 334 YTCLSWLPTYFSEALSLNLTEAAWVSILPPLASIVVTSLASQFADYLITNGVDTTTVRK 392

Inorganic phosphate and probable anion transporter.
Arabidopsis thaliana (taxid: 3702)

>sp|Q0IZQ3|PHT45_ORYSJ Probable anion transporter 5, chloroplastic OS=Oryza sativa subsp. japonica GN=PHT4;5 PE=2 SV=2

 Score =  328 bits (840), Expect = 7e-89,   Method: Compositional matrix adjust.
 Identities = 168/253 (66%), Positives = 196/253 (77%), Gaps = 13/253 (5%)

Query: 172 LAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARS 231
           L  +    +VL+ GV+ WSLATA++P +AGFMPGLVLSR+LVGIGEGVSPSAATDLIARS
Sbjct: 91  LTVVVMNMRVLEIGVVAWSLATAIIPAVAGFMPGLVLSRILVGIGEGVSPSAATDLIARS 150

Query: 232 IPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFSGFKILQE 291
           IP++ERSRAV+ VFGGLSFGSV GLL APPII+NLGWESVFYIFGLLGI W  GF+ L+E
Sbjct: 151 IPVQERSRAVAVVFGGLSFGSVLGLLFAPPIIQNLGWESVFYIFGLLGIIWCLGFQSLKE 210

Query: 292 GETSNGATLAPRSNY-------------INMKKSLSASLEEMGESLKDVPWKAIFRSKAV 338
            +      +    +                  KS  +SL E+  SLKDVPW+  F+SKAV
Sbjct: 211 QQLRGNEDIQVIQDLGQSPSGSSDLISSSVSPKSSESSLGELMNSLKDVPWREFFKSKAV 270

Query: 339 WAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADN 398
           WAMIYAHFCGSWGHYTCLSWLPT+FSEEL LNLTEAAWVS+LPPL S+++TSIAA FADN
Sbjct: 271 WAMIYAHFCGSWGHYTCLSWLPTFFSEELDLNLTEAAWVSVLPPLGSMIITSIAAPFADN 330

Query: 399 LIATGVETTMVRK 411
           LI+ GV+TT VRK
Sbjct: 331 LISNGVDTTKVRK 343

Probable anion transporter.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q652N5|PHT44_ORYSJ Probable anion transporter 4, chloroplastic OS=Oryza sativa subsp. japonica GN=PHT4;4 PE=2 SV=1

 Score =  256 bits (653), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 138/370 (37%), Positives = 213/370 (57%), Gaps = 20/370 (5%)

Query: 43  GCSRLRVSCSIKEKENVKEETDKFDEVLTGLRVDEPGSVSGFDSESGQVRGTEEVGRASY 102
            C +      ++ + + K E  +    +TG     P S S   +E+  +  T E+     
Sbjct: 125 ACVQPDYKIPVRTRADCKAEQYE----ITG----SPLSPSDVPAEAVLIGDTNEIS---- 172

Query: 103 WPPWKNIPQRYKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGY 162
            P W+  P+R+ ++     +F++CNMD+VN+S+AI+PMS  FGW+ +  GL+QSSFFWGY
Sbjct: 173 -PWWQQFPKRWTVVLLCFFSFLLCNMDRVNMSIAILPMSSEFGWSPATVGLIQSSFFWGY 231

Query: 163 ALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGF-MPGLVLSRVLVGIGEGVSP 221
            L+Q+ GG  A  FGG+ VL  GV+ WS+AT L PL A   +P L++ R  +GIGEGV+ 
Sbjct: 232 LLTQILGGIWADRFGGKVVLGFGVVWWSIATVLTPLAAKIGLPFLLVMRAFMGIGEGVAM 291

Query: 222 SAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIA 281
            A  +++++ +P+ ERSR+++ V+ G+  GSV GL  +P +I   GW SVFY FG LG  
Sbjct: 292 PAMNNILSKWVPVSERSRSLALVYSGMYLGSVTGLAFSPLLISRFGWPSVFYAFGSLGSV 351

Query: 282 WFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAM 341
           WF+    L + +  +  +  P  +    +  L  S   + E +  +PWK I     VWA+
Sbjct: 352 WFA----LWQRKAHSSPSEDPELSKAEKRYILGGS--TLKEPVTSIPWKLILSKPPVWAL 405

Query: 342 IYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIA 401
           I +HFC +WG +  L+W+PTY+++ L  NLTE+  + +LP L   +  +I    AD L+ 
Sbjct: 406 IVSHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLLCVLPWLTMAIFANIGGWIADTLVG 465

Query: 402 TGVETTMVRK 411
            GV  T VRK
Sbjct: 466 RGVSITNVRK 475

Probable anion transporter.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9SDI4|PHT41_ORYSJ Probable anion transporter 1, chloroplastic OS=Oryza sativa subsp. japonica GN=PHT4;1 PE=2 SV=1

 Score =  251 bits (642), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 125/305 (40%), Positives = 186/305 (60%), Gaps = 7/305 (2%)

Query: 108 NIPQRYKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQL 167
             P+R+ ++     AF++CNMD+VN+S+AI+PMS  FGWN    GL+QSSFFWGY L+Q+
Sbjct: 115 QFPKRWAIVFLCFSAFLLCNMDRVNMSIAILPMSAEFGWNPQTVGLIQSSFFWGYLLTQI 174

Query: 168 PGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGF-MPGLVLSRVLVGIGEGVSPSAATD 226
            GG  A   GG+ VL  GV+ WS+ATAL P  A   +P L+++R  +G+GEGV+  A  +
Sbjct: 175 AGGIWADTVGGKTVLGFGVIWWSIATALTPFAAKLGLPFLLVTRAFMGVGEGVAMPAMNN 234

Query: 227 LIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFSGF 286
           ++++ +P+ ERSR+++ V+ G+  GSV GL  +P +I N GW SVFY FG LG+ WFS +
Sbjct: 235 ILSKWVPVSERSRSLALVYSGMYLGSVTGLAFSPLLIHNFGWPSVFYSFGSLGVFWFSTW 294

Query: 287 KILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHF 346
                        ++        +K L  S    GE +K++PW  I     VWA+I +HF
Sbjct: 295 ASKAYSSPLEDPGISAE------EKKLITSQTTGGEPVKEIPWGLILSKPPVWALIVSHF 348

Query: 347 CGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVET 406
           C +WG +  L+W+PTY+++ L  NLTE+    +LP L   +  +     AD L++ G+  
Sbjct: 349 CHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVSANFGGWIADTLVSRGLSV 408

Query: 407 TMVRK 411
           T VRK
Sbjct: 409 TTVRK 413

Probable anion transporter.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|O82390|ANTR1_ARATH Sodium-dependent phosphate transport protein 1, chloroplastic OS=Arabidopsis thaliana GN=ANTR1 PE=1 SV=1

 Score =  249 bits (636), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 127/330 (38%), Positives = 193/330 (58%), Gaps = 11/330 (3%)

Query: 87  ESGQVRGTEEVGRAS----YWPPWKNIPQRYKLIGTTSLAFVICNMDKVNLSVAIIPMSH 142
           E  +V G  +V   S      P W+  P+R+ ++     AF++CNMD+VN+S+AI+PMS 
Sbjct: 73  EGDKVSGNNDVVSDSPSSIVLPWWEEFPKRWVIVLLCFSAFLLCNMDRVNMSIAILPMSA 132

Query: 143 RFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGF 202
            +GWN +  GL+QSSFFWGY L+Q+ GG  A   GG++VL  GV+ WS+AT L P+ A  
Sbjct: 133 EYGWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKRVLGFGVIWWSIATILTPVAAKL 192

Query: 203 -MPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPP 261
            +P L++ R  +G+GEGV+  A  +++++ +P++ERSR+++ V+ G+  GSV GL  +P 
Sbjct: 193 GLPYLLVVRAFMGVGEGVAMPAMNNILSKWVPVQERSRSLALVYSGMYLGSVTGLAFSPF 252

Query: 262 IIENLGWESVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMG 321
           +I   GW SVFY FG LG  W + +    E       TL P       ++ L A      
Sbjct: 253 LIHQFGWPSVFYSFGSLGTVWLTLWLTKAESSPLEDPTLLPE------ERKLIADNCASK 306

Query: 322 ESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILP 381
           E +K +PW+ I     VWA+I  HFC +WG +  L+W+PTY+ + L  NL E+  +S+ P
Sbjct: 307 EPVKSIPWRLILSKPPVWALISCHFCHNWGTFILLTWMPTYYHQVLKFNLMESGLLSVFP 366

Query: 382 PLASVLVTSIAAQFADNLIATGVETTMVRK 411
            +   +  +     AD L++ G   T VRK
Sbjct: 367 WMTMAISANAGGWIADTLVSRGFSVTNVRK 396

Specific for inorganic phosphate transport across the thylakoid membrane in a sodium dependent manner. Binds glutamate but cannot transport it.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8GX78|ANTR2_ARATH Probable anion transporter 2, chloroplastic OS=Arabidopsis thaliana GN=ANTR2 PE=2 SV=1

 Score =  244 bits (623), Expect = 9e-64,   Method: Compositional matrix adjust.
 Identities = 139/383 (36%), Positives = 214/383 (55%), Gaps = 23/383 (6%)

Query: 37  HLYPSEGC-------SRLRVSCSIKEKENVKEETDKFDEVLTGLRVDEPGSVSGFDSESG 89
           H+  S GC       S +R   SIK   +      +  ++  G+     GS     +E+ 
Sbjct: 58  HMRRSFGCFLQPRMDSVIRFRNSIKINRSRAYYKSEESDITEGVVPSADGS-----AEAI 112

Query: 90  QVRGTEEVGRASYWPPWKNIPQRYKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSS 149
            V G  +   AS W  W+  P+R+ ++     +F++CNMD+VN+S+AI+PMS  + W+S+
Sbjct: 113 LVEGNLQ--NASPW--WQQFPRRWVIVLLCFSSFLLCNMDRVNMSIAILPMSQEYNWSSA 168

Query: 150 VAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGF-MPGLVL 208
             GL+QSSFFWGY L+Q+ GG  A  FGG+ VL  GV+ WS AT + P+ A   +P L++
Sbjct: 169 TVGLIQSSFFWGYLLTQILGGIWADKFGGKVVLGFGVVWWSFATIMTPIAARLGLPFLLV 228

Query: 209 SRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGW 268
            R  +GIGEGV+  A  +++++ IP+ ERSR+++ V+ G+  GSV GL  +P +I   GW
Sbjct: 229 VRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLALVYSGMYLGSVTGLAFSPMLITKFGW 288

Query: 269 ESVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVP 328
            SVFY FG LG  WF  +         +   L+     + +  S      +  E +  +P
Sbjct: 289 PSVFYSFGSLGSIWFLLWLKFAYSSPKDDPDLSEEEKKVILGGS------KPREPVTVIP 342

Query: 329 WKAIFRSKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLV 388
           WK I     VWA+I +HFC +WG +  L+W+PTY+++ L  NLTE+  + +LP L   + 
Sbjct: 343 WKLILSKPPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLLCVLPWLTMAVF 402

Query: 389 TSIAAQFADNLIATGVETTMVRK 411
            +I    AD L++ G+  T VRK
Sbjct: 403 ANIGGWIADTLVSRGLSITNVRK 425

Inorganic phosphate and probable anion transporter.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8W0H5|PHT43_ORYSJ Probable anion transporter 3, chloroplastic OS=Oryza sativa subsp. japonica GN=PHT4;3 PE=2 SV=1

 Score =  189 bits (480), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 119/304 (39%), Positives = 166/304 (54%), Gaps = 4/304 (1%)

Query: 111 QRYKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGG 170
           +R K+     LA  +CN D+V +SVAI+P+S  +GW  S AG+VQSSF WGY +S + GG
Sbjct: 96  ERVKVAAMLGLALALCNADRVVMSVAIVPLSQAYGWTPSFAGVVQSSFLWGYLVSPIIGG 155

Query: 171 WLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLS-RVLVGIGEGVSPSAATDLIA 229
            L   +GG++V+  GV +WSLAT L P  A     L LS RVL+G+ EGV+  +  +++ 
Sbjct: 156 ALVDYYGGKRVMAYGVALWSLATFLSPWAAARSLWLFLSTRVLLGMAEGVALPSMNNMVL 215

Query: 230 RSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFSGFKIL 289
           R  P  ERS AV     G   G+  GLLL+P I+   G    F IFGL G  W   +   
Sbjct: 216 RWFPRTERSSAVGIAMAGFQLGNTIGLLLSPIIMSRAGIFGPFVIFGLFGFLWVLVWISA 275

Query: 290 QEGETSNGATLAPRS-NYINMKKSLSASLEEMGESLKDVPWKAIFRSK-AVWAMIYAHFC 347
             G     A ++    +YI   + L  + +  GE L+ VP  +   SK   WA+I A+  
Sbjct: 276 ISGTPGENAQISAHELDYITRGQKLVKT-QSGGERLRKVPPFSKLLSKWPTWALISANAM 334

Query: 348 GSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETT 407
            SWG++  LSW+P YF     +NL EAAW S LP +   ++  +A   +D LI  G   T
Sbjct: 335 HSWGYFVILSWMPVYFKTIYHVNLREAAWFSALPWVMMAVLGYVAGVVSDRLIQNGTSIT 394

Query: 408 MVRK 411
           + RK
Sbjct: 395 LTRK 398

Probable anion transporter.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q7XJR2|ANTR3_ARATH Probable anion transporter 3, chloroplastic OS=Arabidopsis thaliana GN=ANTR3 PE=2 SV=2

 Score =  186 bits (473), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 114/312 (36%), Positives = 170/312 (54%), Gaps = 19/312 (6%)

Query: 109 IPQRYKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLP 168
           +P+R K++  T+    +CN D+V +SVA++P++ + GW+SS  G+VQSSF WGY  S + 
Sbjct: 95  MPERIKVVILTACMMCLCNADRVVMSVAVVPLADKLGWSSSFLGVVQSSFLWGYIFSSVI 154

Query: 169 GGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMP-GLVLSRVLVGIGEGVSPSAATDL 227
           GG L   +GG++VL  GV +WSLAT L P  A      L+  R   G+ EGV+  + T L
Sbjct: 155 GGALVDRYGGKRVLAWGVALWSLATLLTPWAAAHSTLALLCVRAFFGLAEGVAMPSMTTL 214

Query: 228 IARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFSGFK 287
           ++R  P++ER+ AV     G   G+V GLLL P ++ ++G    F +F  LG+ W S + 
Sbjct: 215 LSRWFPMDERASAVGISMAGFHMGNVVGLLLTPLMLSSIGISGPFILFASLGLLWVSTW- 273

Query: 288 ILQEGETSNGATLAPRSNYINMKKSLSASLEEMGE-------SLKDVPWKAIFRSK-AVW 339
                  S+G T  P+ +    +  L   L + G+       S K  P   +  SK   W
Sbjct: 274 -------SSGVTNNPQDSPFITRSEL--RLIQAGKPVQPSTISPKPNPSLRLLLSKLPTW 324

Query: 340 AMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNL 399
           A+I+A+   +WG++  LSW+P YF    ++NL +AAW S LP     +    A   +D L
Sbjct: 325 AIIFANVTNNWGYFVLLSWMPVYFQTVFNVNLKQAAWFSALPWATMAISGYYAGAASDFL 384

Query: 400 IATGVETTMVRK 411
           I TG   T VRK
Sbjct: 385 IRTGHSVTSVRK 396

Inorganic phosphate and probable anion transporter.

Arabidopsis thaliana (taxid: 3702)

>sp|Q66GI9|ANTR4_ARATH Probable anion transporter 4, chloroplastic OS=Arabidopsis thaliana GN=ANTR4 PE=2 SV=1

 Score =  180 bits (457), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 112/307 (36%), Positives = 164/307 (53%), Gaps = 10/307 (3%)

Query: 111 QRYKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGG 170
           +R K++   +LA  +CN D+V +SVAI+P+S   GW+ S +G+VQSSF WGY +S + GG
Sbjct: 110 ERVKVVAMLALALALCNADRVVMSVAIVPLSLSRGWSKSFSGIVQSSFLWGYLISPIAGG 169

Query: 171 WLAKIFGGRKVLQTGVLIWSLATALLPLLA-GFMPGLVLSRVLVGIGEGVSPSAATDLIA 229
            L   +GG+ V+  GV +WSLAT L P  A   +  L+ +R +VG+ EGV+     +++A
Sbjct: 170 TLVDRYGGKVVMAWGVALWSLATFLTPWAADSSLWALLAARAMVGVAEGVALPCMNNMVA 229

Query: 230 RSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFSGFKIL 289
           R  P  ERSRAV     G   G+V GL+L+P ++   G    F IFGL G  W     ++
Sbjct: 230 RWFPPTERSRAVGIAMAGFQLGNVVGLMLSPILMSQGGIYGPFVIFGLSGFLWL----LV 285

Query: 290 QEGETSNGATLAPRSN-----YINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYA 344
               TS+     P+       YI  KK +S    +   +    P+  +      WA+I A
Sbjct: 286 WLSATSSAPDRHPQITKSELEYIKQKKQISTMENKRISTSGIPPFGRLLSKMPTWAVIVA 345

Query: 345 HFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGV 404
           +   SWG +  LSW+P YF+    +NL +AAW S +P         IA  ++D LI  G 
Sbjct: 346 NSMHSWGFFVILSWMPIYFNSVYHVNLKQAAWFSAVPWSMMAFTGYIAGFWSDLLIRRGT 405

Query: 405 ETTMVRK 411
             T+ RK
Sbjct: 406 SITLTRK 412

Inorganic phosphate and probable anion transporter.

Arabidopsis thaliana (taxid: 3702)

>sp|Q53WP9|PHT42_ORYSJ Probable anion transporter 2, chloroplastic OS=Oryza sativa subsp. japonica GN=PHT4;2 PE=2 SV=1

 Score =  168 bits (425), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 104/305 (34%), Positives = 160/305 (52%), Gaps = 7/305 (2%)

Query: 109 IPQRYKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLP 168
           +P+R K++   +   ++CN D+V +SVA++P + ++GW+SS  G+VQSSF WGY  S + 
Sbjct: 119 LPERAKVVALVAAVMLLCNADRVVMSVAVVPFAAQYGWSSSFLGIVQSSFLWGYVFSSMV 178

Query: 169 GGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLS-RVLVGIGEGVSPSAATDL 227
           GG LA  +GG+KV+     +WSLAT L P  A     ++L+ R L G+ EGV+    +  
Sbjct: 179 GGALADRYGGKKVMAGAAALWSLATFLTPWAASQSTIMLLAIRALFGLAEGVAFPTMSTF 238

Query: 228 IARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFSGFK 287
           + +  P  ER+ AV    GG   G+V   L  P I+ ++G    F  F  LG  W S + 
Sbjct: 239 LPKWFPTHERATAVGISMGGFHLGNVISFLATPIIMSHIGLAGTFAFFASLGYLWLSVWL 298

Query: 288 ILQEGETSNGATLAPRS-NYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHF 346
              E +  +  T++      I   +S S        SL++     I     +WA+I A+ 
Sbjct: 299 FNVESDPLDSRTISKSELQLILAGRSASKIQGSKFPSLRE-----ILSKIEMWAIIVANV 353

Query: 347 CGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVET 406
             +WG++  LSW+P YF    ++NL +AAW S +P     L   +A   AD LI +G   
Sbjct: 354 VNNWGYFVLLSWMPVYFKTVYNVNLKQAAWFSAIPWAVMALSGYVAGASADFLIKSGFSV 413

Query: 407 TMVRK 411
            +VRK
Sbjct: 414 ALVRK 418

Probable anion transporter.

Oryza sativa subsp. japonica (taxid: 39947)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	423
255586001	533	Inner membrane transport protein yjjL, p	0.950	0.754	0.715	1e-161
224120476	543	predicted protein [Populus trichocarpa]	0.969	0.755	0.707	1e-161
224144091	535	predicted protein [Populus trichocarpa]	0.957	0.757	0.694	1e-156
359484723	526	PREDICTED: probable anion transporter 6,	0.950	0.764	0.693	1e-156
356546138	525	PREDICTED: probable anion transporter 6,	0.950	0.765	0.648	1e-149
356562936	524	PREDICTED: probable anion transporter 6,	0.950	0.767	0.648	1e-148
449443273	538	PREDICTED: probable anion transporter 6,	0.846	0.665	0.695	1e-147
357478369	541	hypothetical protein MTR_4g116030 [Medic	0.891	0.696	0.658	1e-144
297812223	517	hypothetical protein ARALYDRAFT_910078 [	0.895	0.733	0.627	1e-140
42567984	517	putative anion transporter 6 [Arabidopsi	0.907	0.742	0.630	1e-139

>gi|255586001|ref|XP_002533670.1| Inner membrane transport protein yjjL, putative [Ricinus communis] gi|223526438|gb|EEF28716.1| Inner membrane transport protein yjjL, putative [Ricinus communis]

 Score =  575 bits (1483), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 299/418 (71%), Positives = 339/418 (81%), Gaps = 16/418 (3%)

Query: 1   MAKLTLGAEKF--FVFAHNTSSGRLVFAKRNSSKRQKFHLYPSEGCSRLRVSCSIKEKEN 58
           MAK TL   K   F F  N ++    F   +  K +  HL PS+   + RV CS+KEKEN
Sbjct: 1   MAKFTLINNKADNFCFLSNNTNTHASFFNNSCLKFKNSHLIPSKRILKFRVLCSVKEKEN 60

Query: 59  VKEETDKFDEVLTGLRVD---EPGSVSGFDSESGQVRGTEEVGRASYWPPWKNIPQRYKL 115
           VKE +++ +EV++GLRV+   + G   G DS      G +EVG    WPPWKNIPQRYKL
Sbjct: 61  VKE-SERVNEVVSGLRVEGLKQTGLQLGNDS------GLQEVGFDWNWPPWKNIPQRYKL 113

Query: 116 IGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKI 175
           IGTTSLAFVICNMDKVNLSVAIIPMSH+FGWN+S+AGLVQSSFFWGYALSQLPGGWL+KI
Sbjct: 114 IGTTSLAFVICNMDKVNLSVAIIPMSHQFGWNASMAGLVQSSFFWGYALSQLPGGWLSKI 173

Query: 176 FGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLE 235
           FGGRKVL+ GVL+WSLATA +PLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIAR IPLE
Sbjct: 174 FGGRKVLKIGVLVWSLATAFVPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARLIPLE 233

Query: 236 ERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFSGFKILQEGETS 295
           ERSRAV+FVFGGLS GSVAGLLLAPP+I+  GWESVFYIFG LGIAWF  F+ L+E ++S
Sbjct: 234 ERSRAVAFVFGGLSVGSVAGLLLAPPLIQIFGWESVFYIFGFLGIAWFLTFQFLEEEQSS 293

Query: 296 N--GATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHY 353
              G T +P+S Y  ++KS + SL E+  SLKDVPWKA F ++AVWAMIYAHFCGSWGHY
Sbjct: 294 FAIGPTASPQSTY--LEKSWNTSLPELSSSLKDVPWKAFFETRAVWAMIYAHFCGSWGHY 351

Query: 354 TCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRK 411
           TCLSWLP+YFSEEL+LNLTEAAWVSILPPLASV VTSIAAQFADNLIA GVETT VRK
Sbjct: 352 TCLSWLPSYFSEELNLNLTEAAWVSILPPLASVFVTSIAAQFADNLIANGVETTTVRK 409

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224120476|ref|XP_002331057.1| predicted protein [Populus trichocarpa] gi|222872987|gb|EEF10118.1| predicted protein [Populus trichocarpa]

 Score =  573 bits (1476), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 297/420 (70%), Positives = 328/420 (78%), Gaps = 10/420 (2%)

Query: 1   MAKLTLGAEKFFVFAHNTSSGRLVFAKRNSSKRQKFHLYPSEGCSRLRVSCSIKEKENVK 60
           MA  T  AE F   +H+T++   +     S K     L  S+     RV C IKEKENV 
Sbjct: 1   MANFTFKAENFSSLSHHTNTQTSLLNTTTSFKTNSLRLLHSKNSLTFRVWCGIKEKENVT 60

Query: 61  EETDKFDEVLTG-LRVDE----PGSVSGFDSESGQVRGTEEVGRASYWPPWKNIPQRYKL 115
             +++  +VLTG  RVDE     GS   F+ + G   G+ EVG    WPPWKNIPQRYKL
Sbjct: 61  G-SERVPDVLTGPKRVDELDPKRGSSLDFEQKLGNDSGSSEVGFDWNWPPWKNIPQRYKL 119

Query: 116 IGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKI 175
           IGTTSLAFVICNMDKVNLSVAIIPMSH+FGWN+S AGLVQSSFFWGYALSQLPGGWLAKI
Sbjct: 120 IGTTSLAFVICNMDKVNLSVAIIPMSHQFGWNASTAGLVQSSFFWGYALSQLPGGWLAKI 179

Query: 176 FGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIAR----S 231
           FGGRKVL+ GVL WS+ATALLP LAG+MPGLVLSRVLVGIGEGVSPSAATDLIAR    S
Sbjct: 180 FGGRKVLKFGVLTWSVATALLPFLAGYMPGLVLSRVLVGIGEGVSPSAATDLIARHTLMS 239

Query: 232 IPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFSGFKILQE 291
           IPLEERSRAV+FVFGGLS GSV GLLLAPP+I+N GW SVFYIFG LG+AWF GF+ L+E
Sbjct: 240 IPLEERSRAVAFVFGGLSVGSVIGLLLAPPLIQNFGWASVFYIFGFLGLAWFLGFQYLEE 299

Query: 292 GETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWG 351
           G+ S+ A  A R   I+M+KS S SL  +G SLKDVPWKA FR+ AVWAMIYAHFCGSWG
Sbjct: 300 GQASHSAKPASRPQSIHMEKSFSNSLAALGGSLKDVPWKAFFRTPAVWAMIYAHFCGSWG 359

Query: 352 HYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRK 411
           HY CLSWLP+YFSEELSLNLTEAAWVSILPPLASV VTS AAQ ADNLIA GVETT VRK
Sbjct: 360 HYNCLSWLPSYFSEELSLNLTEAAWVSILPPLASVFVTSFAAQLADNLIANGVETTTVRK 419

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224144091|ref|XP_002325183.1| predicted protein [Populus trichocarpa] gi|222866617|gb|EEF03748.1| predicted protein [Populus trichocarpa]

 Score =  557 bits (1436), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 289/416 (69%), Positives = 320/416 (76%), Gaps = 11/416 (2%)

Query: 1   MAKLTLGAEKFFVFAHNTSSGRLVFAKRNSSKRQKFHLYPSEGCSRLRVSCSIKEKENVK 60
           MA LTL A+ F   +HNT++   VF    S K    +   S    + RV C +KEKENVK
Sbjct: 1   MANLTLKAKSFCSLSHNTNTQTSVFKTTTSFKNNSLNFLHSGNSLKFRVWCGVKEKENVK 60

Query: 61  EETDKFDEVLTGLR-VDE----PGSVSGFDSESGQVRGTEEVGRASYWPPWKNIPQRYKL 115
           E  ++  +VL GL+  DE     GS   F+   G   G+ EVG    WPPWKNIP RYKL
Sbjct: 61  EG-ERVPDVLAGLKKADELDPKRGSSLDFEQRLGDDSGSSEVGFDWKWPPWKNIPLRYKL 119

Query: 116 IGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKI 175
           IGTTSLAFVICNMDKVNLSVAIIPMSH+FGWN+S AGLVQSSFFWGYALSQLPGGWLAKI
Sbjct: 120 IGTTSLAFVICNMDKVNLSVAIIPMSHQFGWNASTAGLVQSSFFWGYALSQLPGGWLAKI 179

Query: 176 FGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLE 235
           FGGRKVLQ GVL WS+ATALLP LAG+MPG VLSRVLVGIGEGVSPSAATDLIAR     
Sbjct: 180 FGGRKVLQIGVLTWSVATALLPFLAGYMPGFVLSRVLVGIGEGVSPSAATDLIAR----- 234

Query: 236 ERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFSGFKILQEGETS 295
            RSRAV+FVFGGLS GSV GLLLAPP+I+N GW SVFYIFG LG+AWF GF+ L+EG+ S
Sbjct: 235 HRSRAVAFVFGGLSVGSVTGLLLAPPLIQNFGWASVFYIFGFLGVAWFLGFQYLEEGQAS 294

Query: 296 NGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTC 355
             A    RS  I  +KS S +L E+G SLKDVPWKA F++ AVWAMIYAHFCGSWGHYTC
Sbjct: 295 FAAKPTSRSQTIYSEKSSSNALAELGGSLKDVPWKAFFQTPAVWAMIYAHFCGSWGHYTC 354

Query: 356 LSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRK 411
           LSWLP+YFSEELSLNLTEAAWVSILPPLASV VTSIAAQ AD LI+ GVE T VRK
Sbjct: 355 LSWLPSYFSEELSLNLTEAAWVSILPPLASVFVTSIAAQLADKLISNGVEITTVRK 410

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359484723|ref|XP_002263200.2| PREDICTED: probable anion transporter 6, chloroplastic-like [Vitis vinifera]

 Score =  557 bits (1435), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 285/411 (69%), Positives = 330/411 (80%), Gaps = 9/411 (2%)

Query: 1   MAKLTLGAEKFFVFAHNTSSGRLVFAKRNSSKRQKFHLYPSEGCSRLRVSCSIKEKENVK 60
           MAK     E    F  +T+S         S K ++  ++ S+  S+LRV  +I+ KE+V 
Sbjct: 1   MAKFAFTTENICCFPRHTNS----LFNNTSLKHRQLLIFSSKQRSQLRVFSAIRGKESVT 56

Query: 61  EETDKFDEVLTGLRVDEPGSVSGFDSESGQVRGTEEVGRASYWPPWKNIPQRYKLIGTTS 120
           E     + V+TGLRVDE  + S   S++       EVG    WPPWKN+PQRYKLIGTTS
Sbjct: 57  ET----ESVITGLRVDELDN-SASASDAEGQEEGGEVGFDWNWPPWKNLPQRYKLIGTTS 111

Query: 121 LAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRK 180
           LAFV+CNMDKVNLSVAIIPMSH+FGWNSS AGLVQSSFFWGYALSQLPGGWLAKIFGGRK
Sbjct: 112 LAFVVCNMDKVNLSVAIIPMSHQFGWNSSTAGLVQSSFFWGYALSQLPGGWLAKIFGGRK 171

Query: 181 VLQTGVLIWSLATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRA 240
           VL+ GVL WSLATAL+P+LAGFMPGLVLSR+LVGIGEGVSPSAATDLIARSIPLEERSRA
Sbjct: 172 VLEIGVLTWSLATALVPVLAGFMPGLVLSRILVGIGEGVSPSAATDLIARSIPLEERSRA 231

Query: 241 VSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFSGFKILQEGETSNGATL 300
           V+FVFGGLS GSV GLLLAPP+I+N GWE+VFYIFG+LGIAWF GF+ ++E + S  A L
Sbjct: 232 VAFVFGGLSVGSVTGLLLAPPLIQNFGWEAVFYIFGILGIAWFLGFQFVKEEQPSFVADL 291

Query: 301 APRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLSWLP 360
            P S  I+ KKSL+ SL+++  SLKDVPWKA F+++AVWAMIY HFCGSWGHYTCLSWLP
Sbjct: 292 IPWSRTISSKKSLNTSLKDLDASLKDVPWKAFFQTRAVWAMIYTHFCGSWGHYTCLSWLP 351

Query: 361 TYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRK 411
           TYFSEEL+LNLTEAAWVS+LPPLAS+ VT+IA+Q ADNLIA GVETT VRK
Sbjct: 352 TYFSEELNLNLTEAAWVSVLPPLASIFVTTIASQLADNLIANGVETTTVRK 402

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356546138|ref|XP_003541488.1| PREDICTED: probable anion transporter 6, chloroplastic-like [Glycine max]

 Score =  533 bits (1373), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 279/430 (64%), Positives = 324/430 (75%), Gaps = 28/430 (6%)

Query: 1   MAKLTLGAEKFFVFAHNTSSGRLVFAKRNSSKRQKFHLYPSEGCSRLRVSCSIKEKENVK 60
           MA+LTL  +    F+H   +       R +S  Q+FH + S     LR+S  +   +   
Sbjct: 1   MARLTLRPDNSCFFSHTQRANSHTPFTRTTS-FQRFHFHLSSSNHTLRLSRIVSSAQQNA 59

Query: 61  EETDKFD------EVLTGLRVDEPGSVSGFDSESGQVRGTEEVGRASYWPPWKNIPQRYK 114
           +ET +        +VLT L+V+E             V    E   +  WPPWKN+PQRYK
Sbjct: 60  KETQRVSMAKAKAKVLTDLQVEE-------------VEKQHET-LSWNWPPWKNLPQRYK 105

Query: 115 LIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAK 174
           LIGTTSLAF+ICNMDKVNLS+AIIPMSH+FGWNSS AGLVQSSFFWGYALSQLPGGWLAK
Sbjct: 106 LIGTTSLAFIICNMDKVNLSIAIIPMSHQFGWNSSTAGLVQSSFFWGYALSQLPGGWLAK 165

Query: 175 IFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPL 234
           IFGG  VL+ GVLIWS+ATAL+P LAG+MPGL+LSRVLVGIGEGVSPSAATDLIARSIPL
Sbjct: 166 IFGGGAVLEVGVLIWSVATALVPFLAGYMPGLLLSRVLVGIGEGVSPSAATDLIARSIPL 225

Query: 235 EERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFSGFKILQEGET 294
           EERSRAV+ VFGGLS GSV GLLLAPP+I+NLGWESVFYIFGLLGIAWF GF++L+ GET
Sbjct: 226 EERSRAVALVFGGLSVGSVMGLLLAPPLIQNLGWESVFYIFGLLGIAWFLGFQVLEGGET 285

Query: 295 S-NGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHY 353
             N  +L+   +   M +S   SL E+  SLKDVPWKA F+++AVWAMIYAHFCGSWGHY
Sbjct: 286 QLNAESLSSAQDI--MTQSWKTSLRELNGSLKDVPWKAFFQNRAVWAMIYAHFCGSWGHY 343

Query: 354 TCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKEA 413
            CLSWLPT+FSEEL+LNLTEAAWVSILPPLAS+ VTS+AAQ ADNLI+ GVETT+VRK  
Sbjct: 344 NCLSWLPTFFSEELNLNLTEAAWVSILPPLASIFVTSLAAQLADNLISRGVETTVVRK-- 401

Query: 414 VHSCVSQCFL 423
              C S  FL
Sbjct: 402 --ICQSIAFL 409

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356562936|ref|XP_003549724.1| PREDICTED: probable anion transporter 6, chloroplastic-like [Glycine max]

 Score =  530 bits (1366), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 278/429 (64%), Positives = 323/429 (75%), Gaps = 27/429 (6%)

Query: 1   MAKLTLGAEKFFVFAH-NTSSGRLVFAKRNSSKRQKFHLYPSEGCSRLRVSCS----IKE 55
           MA+LTL  +    F+H   +     F +  S +R  FHL PS    RLR+  S     KE
Sbjct: 1   MARLTLRPDNSCFFSHIQRAYSHTPFTRTTSFQRFHFHLSPSNHTLRLRIVSSSQQNAKE 60

Query: 56  KENVKEETDKFDEVLTGLRVDEPGSVSGFDSESGQVRGTEEVGRASYWPPWKNIPQRYKL 115
            + V     K  +VLT L+V+E                 +    +  WPPWKN+PQRYKL
Sbjct: 61  TQRVSMAKAK-AKVLTDLQVEE--------------MEKQHETLSWNWPPWKNLPQRYKL 105

Query: 116 IGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKI 175
           IGTTSLAFVICNMDKVNLS+AIIPMSH+FGWNS+ AGLVQSSFFWGYALSQLPGGWLAKI
Sbjct: 106 IGTTSLAFVICNMDKVNLSIAIIPMSHQFGWNSTTAGLVQSSFFWGYALSQLPGGWLAKI 165

Query: 176 FGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLE 235
           FGG  VL+ GVLIWS+ATA +P ++G+MPGL+LSRVLVGIGEGVSPSAATDLIARSIPLE
Sbjct: 166 FGGGTVLEVGVLIWSVATAFVPFISGYMPGLLLSRVLVGIGEGVSPSAATDLIARSIPLE 225

Query: 236 ERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFSGFKILQEGETS 295
           ERSRAV+FVFGGLS GSV GLLLAPP+I+NLGWESVFYIFGLLGIAWF GF++L+ GET 
Sbjct: 226 ERSRAVAFVFGGLSVGSVMGLLLAPPLIQNLGWESVFYIFGLLGIAWFLGFQVLEGGETQ 285

Query: 296 -NGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYT 354
            N  +L+  S+   M +S   SL E+  SLK+VPWKA F+++AVWAMIYAHFCGSWGHY 
Sbjct: 286 LNAESLS--SDQDTMTQSWKTSLRELNGSLKEVPWKAFFQNRAVWAMIYAHFCGSWGHYN 343

Query: 355 CLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKEAV 414
           CLSWLPT+FSEEL+LNLTEAAWVSILPPLAS+ VT +AAQ ADNLI+ GVE T+VRK   
Sbjct: 344 CLSWLPTFFSEELNLNLTEAAWVSILPPLASIFVTGLAAQLADNLISRGVEATVVRK--- 400

Query: 415 HSCVSQCFL 423
             C S  FL
Sbjct: 401 -ICQSIAFL 408

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449443273|ref|XP_004139404.1| PREDICTED: probable anion transporter 6, chloroplastic-like [Cucumis sativus]

 Score =  528 bits (1361), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 265/381 (69%), Positives = 303/381 (79%), Gaps = 23/381 (6%)

Query: 47  LRVSCSIKEKENVKEETDKFDEVLTGLRVD---EPGSVSGFDSESGQVRGTEEVGRASYW 103
           LRV CSIKEKENVK   D    VL+GLRVD     GSVS  +++     G +EVG    W
Sbjct: 41  LRVCCSIKEKENVKGNED-ISPVLSGLRVDASERSGSVSKSENDLSSGHGIDEVGSNLNW 99

Query: 104 PPWKNIPQRYKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYA 163
           PPW+N+P RYKLIGTT+LAFVICNMDKVNLSVAIIPMSH+FGWNSSVAGLVQSSFFWGYA
Sbjct: 100 PPWRNVPDRYKLIGTTALAFVICNMDKVNLSVAIIPMSHQFGWNSSVAGLVQSSFFWGYA 159

Query: 164 LSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSRVLVGIGEGVSPSA 223
           +SQLPGGWLAKIFGGRKVL+ GVL WSLATAL+P LAG+MPGL+ SRVLVGIGEGVSPSA
Sbjct: 160 MSQLPGGWLAKIFGGRKVLEIGVLTWSLATALVPFLAGYMPGLIFSRVLVGIGEGVSPSA 219

Query: 224 ATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWF 283
           ATDLIARSIPL+ERSRAV+FVFGGLS GSV+GLLL+P +I+N GWESVFYIFG LGIAWF
Sbjct: 220 ATDLIARSIPLQERSRAVAFVFGGLSVGSVSGLLLSPSLIQNFGWESVFYIFGFLGIAWF 279

Query: 284 SGFKILQ-------------EGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWK 330
           +GF+ L              E E+ + + L  + +    K      L+++  +LK+VPW+
Sbjct: 280 AGFQFLDGQSSGPLKSISVVESESDSDSVLPKKKSTTPFK------LQQLPAALKEVPWR 333

Query: 331 AIFRSKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTS 390
           A      VWAMIYAHFCGSWGHYTCLSWLPTYFSEEL+LNLTEAAWVSILPPLAS+ VTS
Sbjct: 334 AFLEYPPVWAMIYAHFCGSWGHYTCLSWLPTYFSEELNLNLTEAAWVSILPPLASIFVTS 393

Query: 391 IAAQFADNLIATGVETTMVRK 411
           IA+Q ADNLI+ GV+TT VRK
Sbjct: 394 IASQLADNLISNGVDTTKVRK 414

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357478369|ref|XP_003609470.1| hypothetical protein MTR_4g116030 [Medicago truncatula] gi|355510525|gb|AES91667.1| hypothetical protein MTR_4g116030 [Medicago truncatula]

 Score =  519 bits (1336), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 270/410 (65%), Positives = 308/410 (75%), Gaps = 33/410 (8%)

Query: 28  RNSSKRQKFHLYPSEGCSRLR----VSCSIKEKENVKEETDKFDEVLTGLRVDEPGSVSG 83
           + + +R  FH  PS+   R +    VSCS   ++++KE  +K  +       D    V  
Sbjct: 35  KTTFQRFHFHFTPSKLIHRTKQRTVVSCS-NTQQDIKETHNKLSKTKINALSDLDDDVEL 93

Query: 84  FDSESGQVRGTEEVGRASYWPPWKNIPQRYKLIGTTSLAFVICNMDKVNLSVAIIPMSHR 143
               SG             WP WKN+P RYKLIGTTSLAFVICNMDKVNLS+AIIPMSH+
Sbjct: 94  EQHLSGN------------WPSWKNLPLRYKLIGTTSLAFVICNMDKVNLSIAIIPMSHQ 141

Query: 144 FGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFM 203
           FGWNSS AGLVQSSFFWGYALSQLPGGWLAKIFGGR VL  GVLIWS+ATAL+P LAG+M
Sbjct: 142 FGWNSSTAGLVQSSFFWGYALSQLPGGWLAKIFGGRNVLVVGVLIWSVATALVPFLAGYM 201

Query: 204 PGLVLSRVLVGIGEGVSPSAATDLIAR---------SIPLEERSRAVSFVFGGLSFGSVA 254
           PGL+L+R+LVGIGEGVSPSAATDLIAR         SIPLEERSRAV+FVFGGLS GSV 
Sbjct: 202 PGLILTRILVGIGEGVSPSAATDLIARHVNIQIHFWSIPLEERSRAVAFVFGGLSVGSVL 261

Query: 255 GLLLAPPIIENLGWESVFYIFGLLGIAWFSGFKILQEGETSNGA-TLAPRSNYINMKKSL 313
           GLL APP+I+++GWESVFYIFGLLGIAWF GF+ L+EGET   A + +P     NM +S 
Sbjct: 262 GLLFAPPLIQSIGWESVFYIFGLLGIAWFIGFQFLEEGETRLAAESFSPAQG--NMTQSW 319

Query: 314 SASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTE 373
             SL+EM  SLKDVPWKA F+S+AVWAMIYAHFCGSWGHYTCLSWLPTYFS+EL LNLTE
Sbjct: 320 QTSLKEMNSSLKDVPWKAFFQSRAVWAMIYAHFCGSWGHYTCLSWLPTYFSQELDLNLTE 379

Query: 374 AAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKEAVHSCVSQCFL 423
           AAWVSILPPLAS+ VTSIA+Q AD+LI+ GVETT VRK     C S  FL
Sbjct: 380 AAWVSILPPLASIFVTSIASQLADSLISKGVETTTVRK----ICQSIAFL 425

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297812223|ref|XP_002873995.1| hypothetical protein ARALYDRAFT_910078 [Arabidopsis lyrata subsp. lyrata] gi|297319832|gb|EFH50254.1| hypothetical protein ARALYDRAFT_910078 [Arabidopsis lyrata subsp. lyrata]

 Score =  504 bits (1298), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 266/424 (62%), Positives = 304/424 (71%), Gaps = 45/424 (10%)

Query: 1   MAKLTLGAEKFFVFAHNTSSGRLVFAKRNSSKRQKF----HLYPSEGCSRL---RVSCSI 53
           MA+LTL     F            F+    + +Q F     ++P    + L   RV CS 
Sbjct: 1   MARLTLRPHNHF------------FSSPIHAHKQPFLSVYTIFPHHHHNPLIKSRVKCSA 48

Query: 54  KEKENVKEET-----DKFDEVLTGLRVDEPGSVSGFDSESGQVRGTEEVGRASYWPPWKN 108
              E V+E       D  ++    L + E  S               E G    WPPWKN
Sbjct: 49  SGTERVRESKKLPPKDPIEDPKPLLPIPEVLST--------------ETGFEQNWPPWKN 94

Query: 109 IPQRYKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLP 168
           IPQRYKLIG TSLAFVICNMDKVNLS+AIIPMSH+FGW+SSVAGLVQSSFFWGYALSQLP
Sbjct: 95  IPQRYKLIGATSLAFVICNMDKVNLSIAIIPMSHQFGWSSSVAGLVQSSFFWGYALSQLP 154

Query: 169 GGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLI 228
           GGWL+KIFGGRKVL+ GV  WS ATAL+PLLAGFMPGL+ SR+LVGIGEGVSPSAATDLI
Sbjct: 155 GGWLSKIFGGRKVLEIGVFTWSFATALVPLLAGFMPGLIFSRILVGIGEGVSPSAATDLI 214

Query: 229 ARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFSGFKI 288
           AR+IP++ERSRAV FVFGGLS GSV GLLLAPPIIE   WESVFY+FGLLG+ WF GF+ 
Sbjct: 215 ARTIPVKERSRAVGFVFGGLSLGSVMGLLLAPPIIETFNWESVFYLFGLLGVGWFVGFQF 274

Query: 289 LQEGETSNGATLAPRSNYI-NMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFC 347
           L E E S       + N I N  KS +A+ EE+G SLK++PWK+ F+S AVWAMIY HFC
Sbjct: 275 LNEEEVSY------KGNEISNSHKSENATKEELGSSLKEIPWKSFFQSSAVWAMIYTHFC 328

Query: 348 GSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETT 407
           GSWGHYTCLSWLPTYFSE L+LNLTEAAWVSILPPLAS++VTS+A+QFAD LI  GVETT
Sbjct: 329 GSWGHYTCLSWLPTYFSEALNLNLTEAAWVSILPPLASIVVTSLASQFADYLITNGVETT 388

Query: 408 MVRK 411
            VRK
Sbjct: 389 TVRK 392

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|42567984|ref|NP_197538.2| putative anion transporter 6 [Arabidopsis thaliana] gi|122214318|sp|Q3E9A0.1|ANTR6_ARATH RecName: Full=Probable anion transporter 6, chloroplastic; AltName: Full=Phosphate transporter PHT4;5; Flags: Precursor gi|332005454|gb|AED92837.1| putative anion transporter 6 [Arabidopsis thaliana]

 Score =  502 bits (1292), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 264/419 (63%), Positives = 302/419 (72%), Gaps = 35/419 (8%)

Query: 1   MAKLTLGAEKFFVFAHNTSSGRLVFAKRNS--SKRQKFHLYPSEGCSRLRVSCSIKEKEN 58
           MA+LTL         HN      ++A +    S    F  +      + RV CS    E 
Sbjct: 1   MARLTLRP-------HNHFFSSPIYAHKQPFLSVYTIFPHHHQNPLIKSRVKCSASGTER 53

Query: 59  VKEET-----DKFDEVLTGLRVDEPGSVSGFDSESGQVRGTEEVGRASYWPPWKNIPQRY 113
           V+E       D  ++    L + E  S               E G    WPPWKNIPQRY
Sbjct: 54  VRESKKLPPKDPIEDPKPQLPIPEVLST--------------ETGFEQNWPPWKNIPQRY 99

Query: 114 KLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLA 173
           KLIG TSLAFVICNMDKVNLS+AIIPMSH+FGW+SSVAGLVQSSFFWGYALSQLPGGWL+
Sbjct: 100 KLIGATSLAFVICNMDKVNLSIAIIPMSHQFGWSSSVAGLVQSSFFWGYALSQLPGGWLS 159

Query: 174 KIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIP 233
           KIFGGRKVL+ GV  WS ATAL+PLLAGFMPGL+ SR+LVGIGEGVSPSAATDLIAR+IP
Sbjct: 160 KIFGGRKVLEIGVFTWSFATALVPLLAGFMPGLIFSRILVGIGEGVSPSAATDLIARTIP 219

Query: 234 LEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFSGFKILQEGE 293
           ++ERSRAV FVFGGLS GSV GLLLAPPIIE   WESVFY+FGLLG+ WF GF+ L E E
Sbjct: 220 VKERSRAVGFVFGGLSLGSVMGLLLAPPIIETFNWESVFYLFGLLGVGWFVGFQFLNEEE 279

Query: 294 TSNGATLAPRSNYINM-KKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGH 352
            S       + N I+   KS +A+ EE+G SLK++PWK+ F+S AVWAMIY HFCGSWGH
Sbjct: 280 VSY------KGNEISTSHKSENATKEELGSSLKEIPWKSFFQSPAVWAMIYTHFCGSWGH 333

Query: 353 YTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRK 411
           YTCLSWLPTYFSE LSLNLTEAAWVSILPPLAS++VTS+A+QFAD LI  GV+TT VRK
Sbjct: 334 YTCLSWLPTYFSEALSLNLTEAAWVSILPPLASIVVTSLASQFADYLITNGVDTTTVRK 392

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	423
TAIR|locus:2149199	517	PHT4;5 "phosphate transporter	0.732	0.599	0.766	2.4e-131
TAIR|locus:2060694	512	PHT4;1 "AT2G29650" [Arabidopsi	0.780	0.644	0.378	1.1e-66
TAIR|locus:2126066	541	ANTR2 "AT4G00370" [Arabidopsis	0.865	0.676	0.363	1.6e-63
TAIR|locus:2065615	512	PHT4;2 "AT2G38060" [Arabidopsi	0.704	0.582	0.364	6.7e-49
ZFIN|ZDB-GENE-060929-1158	489	slc17a5 "solute carrier family	0.695	0.601	0.346	1.5e-41
UNIPROTKB|E1B7R3	495	SLC17A5 "Uncharacterized prote	0.624	0.533	0.361	1.5e-41
UNIPROTKB|F1RQG9	497	SLC17A5 "Uncharacterized prote	0.624	0.531	0.358	3.2e-41
UNIPROTKB|E2R8R4	495	SLC17A5 "Uncharacterized prote	0.624	0.533	0.346	1.7e-40
UNIPROTKB|Q9NRA2	495	SLC17A5 "Sialin" [Homo sapiens	0.624	0.533	0.354	2.2e-40
UNIPROTKB|E1C256	490	SLC17A6 "Uncharacterized prote	0.647	0.559	0.321	7.4e-40

TAIR|locus:2149199 PHT4;5 "phosphate transporter 4;5" [Arabidopsis thaliana (taxid:3702)]

 Score = 1288 (458.5 bits), Expect = 2.4e-131, P = 2.4e-131
 Identities = 243/317 (76%), Positives = 271/317 (85%)

Query:    96 EVGRASYWPPWKNIPQRYKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQ 155
             E G    WPPWKNIPQRYKLIG TSLAFVICNMDKVNLS+AIIPMSH+FGW+SSVAGLVQ
Sbjct:    82 ETGFEQNWPPWKNIPQRYKLIGATSLAFVICNMDKVNLSIAIIPMSHQFGWSSSVAGLVQ 141

Query:   156 SSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSRVLVGI 215
             SSFFWGYALSQLPGGWL+KIFGGRKVL+ GV  WS ATAL+PLLAGFMPGL+ SR+LVGI
Sbjct:   142 SSFFWGYALSQLPGGWLSKIFGGRKVLEIGVFTWSFATALVPLLAGFMPGLIFSRILVGI 201

Query:   216 GEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIF 275
             GEGVSPSAATDLIAR+IP++ERSRAV FVFGGLS GSV GLLLAPPIIE   WESVFY+F
Sbjct:   202 GEGVSPSAATDLIARTIPVKERSRAVGFVFGGLSLGSVMGLLLAPPIIETFNWESVFYLF 261

Query:   276 GLLGIAWFSGFKILQEGETSNGATLAPRSNYINMK-KSLSASLEEMGESLKDVPWKAIFR 334
             GLLG+ WF GF+ L E E S       + N I+   KS +A+ EE+G SLK++PWK+ F+
Sbjct:   262 GLLGVGWFVGFQFLNEEEVSY------KGNEISTSHKSENATKEELGSSLKEIPWKSFFQ 315

Query:   335 SKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQ 394
             S AVWAMIY HFCGSWGHYTCLSWLPTYFSE LSLNLTEAAWVSILPPLAS++VTS+A+Q
Sbjct:   316 SPAVWAMIYTHFCGSWGHYTCLSWLPTYFSEALSLNLTEAAWVSILPPLASIVVTSLASQ 375

Query:   395 FADNLIATGVETTMVRK 411
             FAD LI  GV+TT VRK
Sbjct:   376 FADYLITNGVDTTTVRK 392

GO:0009507 "chloroplast" evidence=ISM

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0016020 "membrane" evidence=ISS

GO:0005315 "inorganic phosphate transmembrane transporter activity" evidence=IDA

GO:0009536 "plastid" evidence=IDA

GO:0015706 "nitrate transport" evidence=RCA

TAIR|locus:2060694 PHT4;1 "AT2G29650" [Arabidopsis thaliana (taxid:3702)]

 Score = 658 (236.7 bits), Expect = 1.1e-66, Sum P(2) = 1.1e-66
 Identities = 129/341 (37%), Positives = 198/341 (58%)

Query:    76 DEPGSVSGFDSESGQVRGTEEVGRAS----YWPPWKNIPQRYKLIGTTSLAFVICNMDKV 131
             D+  S + +  E  +V G  +V   S      P W+  P+R+ ++     AF++CNMD+V
Sbjct:    62 DKSESSNSYYVEGDKVSGNNDVVSDSPSSIVLPWWEEFPKRWVIVLLCFSAFLLCNMDRV 121

Query:   132 NLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSL 191
             N+S+AI+PMS  +GWN +  GL+QSSFFWGY L+Q+ GG  A   GG++VL  GV+ WS+
Sbjct:   122 NMSIAILPMSAEYGWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKRVLGFGVIWWSI 181

Query:   192 ATALLPLLAGF-MPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSF 250
             AT L P+ A   +P L++ R  +G+GEGV+  A  +++++ +P++ERSR+++ V+ G+  
Sbjct:   182 ATILTPVAAKLGLPYLLVVRAFMGVGEGVAMPAMNNILSKWVPVQERSRSLALVYSGMYL 241

Query:   251 GSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMK 310
             GSV GL  +P +I   GW SVFY FG LG  W + +    E       TL P       +
Sbjct:   242 GSVTGLAFSPFLIHQFGWPSVFYSFGSLGTVWLTLWLTKAESSPLEDPTLLPE------E 295

Query:   311 KSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLN 370
             + L A      E +K +PW+ I     VWA+I  HFC +WG +  L+W+PTY+ + L  N
Sbjct:   296 RKLIADNCASKEPVKSIPWRLILSKPPVWALISCHFCHNWGTFILLTWMPTYYHQVLKFN 355

Query:   371 LTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRK 411
             L E+  +S+ P +   +  +     AD L++ G   T VRK
Sbjct:   356 LMESGLLSVFPWMTMAISANAGGWIADTLVSRGFSVTNVRK 396

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0008514 "organic anion transmembrane transporter activity" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0009624 "response to nematode" evidence=IEP

GO:0005315 "inorganic phosphate transmembrane transporter activity" evidence=IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0009579 "thylakoid" evidence=IDA

GO:0030504 "inorganic diphosphate transmembrane transporter activity" evidence=IGI

GO:0009416 "response to light stimulus" evidence=IEP

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009595 "detection of biotic stimulus" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0042631 "cellular response to water deprivation" evidence=RCA

GO:0042742 "defense response to bacterium" evidence=RCA

GO:0043900 "regulation of multi-organism process" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

TAIR|locus:2126066 ANTR2 "AT4G00370" [Arabidopsis thaliana (taxid:3702)]

 Score = 648 (233.2 bits), Expect = 1.6e-63, P = 1.6e-63
 Identities = 137/377 (36%), Positives = 211/377 (55%)

Query:    37 HLYPSEGCS-RLRVSCSIKEKENVKEETDKFDEVLTGLRVDEPGSVSGFDSESGQVRGTE 95
             H+  S GC  + R+   I+ + ++K    +         + E G V   D  +  +    
Sbjct:    58 HMRRSFGCFLQPRMDSVIRFRNSIKINRSRAYYKSEESDITE-GVVPSADGSAEAILVEG 116

Query:    96 EVGRASYWPPWKNIPQRYKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQ 155
              +  AS W  W+  P+R+ ++     +F++CNMD+VN+S+AI+PMS  + W+S+  GL+Q
Sbjct:   117 NLQNASPW--WQQFPRRWVIVLLCFSSFLLCNMDRVNMSIAILPMSQEYNWSSATVGLIQ 174

Query:   156 SSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGF-MPGLVLSRVLVG 214
             SSFFWGY L+Q+ GG  A  FGG+ VL  GV+ WS AT + P+ A   +P L++ R  +G
Sbjct:   175 SSFFWGYLLTQILGGIWADKFGGKVVLGFGVVWWSFATIMTPIAARLGLPFLLVVRAFMG 234

Query:   215 IGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYI 274
             IGEGV+  A  +++++ IP+ ERSR+++ V+ G+  GSV GL  +P +I   GW SVFY 
Sbjct:   235 IGEGVAMPAMNNMLSKWIPVSERSRSLALVYSGMYLGSVTGLAFSPMLITKFGWPSVFYS 294

Query:   275 FGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFR 334
             FG LG  WF  +         +   L+        K  L  S     E +  +PWK I  
Sbjct:   295 FGSLGSIWFLLWLKFAYSSPKDDPDLSEEEK----KVILGGSKPR--EPVTVIPWKLILS 348

Query:   335 SKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQ 394
                VWA+I +HFC +WG +  L+W+PTY+++ L  NLTE+  + +LP L   +  +I   
Sbjct:   349 KPPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLLCVLPWLTMAVFANIGGW 408

Query:   395 FADNLIATGVETTMVRK 411
              AD L++ G+  T VRK
Sbjct:   409 IADTLVSRGLSITNVRK 425

GO:0008514 "organic anion transmembrane transporter activity" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0009706 "chloroplast inner membrane" evidence=IDA

GO:0005315 "inorganic phosphate transmembrane transporter activity" evidence=IDA

GO:0009536 "plastid" evidence=IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0006098 "pentose-phosphate shunt" evidence=RCA

TAIR|locus:2065615 PHT4;2 "AT2G38060" [Arabidopsis thaliana (taxid:3702)]

 Score = 510 (184.6 bits), Expect = 6.7e-49, P = 6.7e-49
 Identities = 112/307 (36%), Positives = 170/307 (55%)

Query:   109 IPQRYKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLP 168
             +P+R K++  T+    +CN D+V +SVA++P++ + GW+SS  G+VQSSF WGY  S + 
Sbjct:    95 MPERIKVVILTACMMCLCNADRVVMSVAVVPLADKLGWSSSFLGVVQSSFLWGYIFSSVI 154

Query:   169 GGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMP-GLVLSRVLVGIGEGVSPSAATDL 227
             GG L   +GG++VL  GV +WSLAT L P  A      L+  R   G+ EGV+  + T L
Sbjct:   155 GGALVDRYGGKRVLAWGVALWSLATLLTPWAAAHSTLALLCVRAFFGLAEGVAMPSMTTL 214

Query:   228 IARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFSGFK 287
             ++R  P++ER+ AV     G   G+V GLLL P ++ ++G    F +F  LG+ W S + 
Sbjct:   215 LSRWFPMDERASAVGISMAGFHMGNVVGLLLTPLMLSSIGISGPFILFASLGLLWVSTWS 274

Query:   288 ILQEGETSN--GATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKA-VWAMIYA 344
                 G T+N   +    RS  + + ++    ++    S K  P   +  SK   WA+I+A
Sbjct:   275 ---SGVTNNPQDSPFITRSE-LRLIQA-GKPVQPSTISPKPNPSLRLLLSKLPTWAIIFA 329

Query:   345 HFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGV 404
             +   +WG++  LSW+P YF    ++NL +AAW S LP     +    A   +D LI TG 
Sbjct:   330 NVTNNWGYFVLLSWMPVYFQTVFNVNLKQAAWFSALPWATMAISGYYAGAASDFLIRTGH 389

Query:   405 ETTMVRK 411
               T VRK
Sbjct:   390 SVTSVRK 396

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0008514 "organic anion transmembrane transporter activity" evidence=ISS

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005315 "inorganic phosphate transmembrane transporter activity" evidence=IDA

GO:0009536 "plastid" evidence=IDA

GO:0015706 "nitrate transport" evidence=RCA

ZFIN|ZDB-GENE-060929-1158 slc17a5 "solute carrier family 17 (anion/sugar transporter), member 5" [Danio rerio (taxid:7955)]

 Score = 412 (150.1 bits), Expect = 1.5e-41, Sum P(2) = 1.5e-41
 Identities = 109/315 (34%), Positives = 161/315 (51%)

Query:   113 YKLIGTTSLAFV--ICNMDKVNLSVAI-----IPM-SHR-----FGWNSSVAGLVQSSFF 159
             Y L    S+A V  + N  K N S +I     IP+  H      + WNS   G +  SFF
Sbjct:    52 YALRVNLSVAMVDMLKNSSKANTSSSICPPHNIPVPKHNHTAMVYDWNSETQGWILGSFF 111

Query:   160 WGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPG-LVLSRVLVGIGEG 218
             +GY ++Q+PGG+LA+ +G + +L  G+L   + T L PL A    G L+  RVL GIGEG
Sbjct:   112 YGYIITQIPGGYLARKYGAKWLLGLGILCTVIFTLLTPLAADLGAGYLIAVRVLEGIGEG 171

Query:   219 VSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLL 278
             V+  A   + A   P  ERSR ++  + G   G+V  L L+  I   L W  VFYIFG +
Sbjct:   172 VTYPAMHAMWASWAPPLERSRLLTISYTGAQLGTVVALPLSGQICFYLDWTYVFYIFGAV 231

Query:   279 GIAWFS-GFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKA 337
             G+ WF      +    +S+         YI     +S+   E+  +   +PW +IF+S  
Sbjct:   232 GLLWFFLWICFVSNSPSSHKRITEAEKTYI-----MSSLKNELSPTQDYIPWTSIFKSMP 286

Query:   338 VWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFAD 397
             +WA++ AHF  +W  YT L+ LPTY ++ L  ++ +   +S LP L   L+  +  Q AD
Sbjct:   287 LWAIVVAHFSYNWTFYTLLTLLPTYMNDVLGFSIQQNGMLSALPYLGCWLLALLGGQLAD 346

Query:   398 NLIATGV-ETTMVRK 411
              L    +  T +VRK
Sbjct:   347 LLRERFLFRTVIVRK 361

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

UNIPROTKB|E1B7R3 SLC17A5 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 410 (149.4 bits), Expect = 1.5e-41, Sum P(2) = 1.5e-41
 Identities = 98/271 (36%), Positives = 144/271 (53%)

Query:   143 RFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGF 202
             ++ W++   G +  SFF+GY ++Q+PGG++A   GG+ +L  GVL  ++ T   PL A F
Sbjct:   100 KYQWDAETQGWILGSFFYGYIITQIPGGYVASRSGGKLLLGFGVLGTAVFTLFTPLAADF 159

Query:   203 MPG-LVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPP 261
               G LV  R L G+GEGV+  A   + +   P  ERS+ +S  + G   G+V  L L+  
Sbjct:   160 GFGALVALRALEGLGEGVTFPAMHAMWSSWAPPLERSKLLSISYAGAQLGTVVSLPLSGV 219

Query:   262 IIENLGWESVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMG 321
             I   + W  VFY FGL+GI WF  +  L         T+ P       K+ + +SL+   
Sbjct:   220 ICYYMNWTYVFYFFGLVGIIWFILWICLVSDTPETHKTITPYE-----KEYILSSLKNQL 274

Query:   322 ESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILP 381
              S K VPW  + +S  +WA++ AHF  +W  YT L+ LPTY  E L  N+ E  ++S +P
Sbjct:   275 SSQKSVPWIPMLKSLPLWAIVVAHFSYNWTFYTLLTLLPTYMKEVLRFNIQENGFLSAVP 334

Query:   382 PLASVLVTSIAAQFADNLIAT-GVETTMVRK 411
              L   L   ++ Q ADNL A     T  VR+
Sbjct:   335 YLGCWLCMILSGQAADNLRARWNFSTLWVRR 365

GO:0016023 "cytoplasmic membrane-bounded vesicle" evidence=IEA

GO:0015739 "sialic acid transport" evidence=IEA

GO:0015136 "sialic acid transmembrane transporter activity" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005765 "lysosomal membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|F1RQG9 SLC17A5 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 408 (148.7 bits), Expect = 3.2e-41, Sum P(2) = 3.2e-41
 Identities = 98/273 (35%), Positives = 146/273 (53%)

Query:   143 RFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGF 202
             ++ WN+   G +  SFF+GY ++Q+PGG++A   GG+ +L  G+L  S+ T L PL A F
Sbjct:   100 KYQWNAETQGWILGSFFYGYIITQIPGGYIASRSGGKLLLGFGILGTSVFTLLTPLAADF 159

Query:   203 MPG-LVLSRVLVGIGEGVSPSAATDLIARSIPLEERSR--AVSFVFGGLSFGSVAGLLLA 259
               G L+  R L G+GEGV+  A   + +   P  ERS+  ++S+   G   G+V  L L+
Sbjct:   160 GVGALIALRALEGLGEGVTFPAMHAMWSSWAPPLERSKLLSISYAVLGAQLGTVVSLPLS 219

Query:   260 PPIIENLGWESVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEE 319
               I   L W  VFY+FGL+GI WF  +  L         T++P       K+ + +SL  
Sbjct:   220 GIICFYLNWTYVFYLFGLVGIIWFILWTWLVSDTPDTHRTISPYE-----KEYILSSLRN 274

Query:   320 MGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSI 379
                S K VPW  + +S  +WA++ AHF  +W  YT L+ LPTY  E L  N+ E  ++S 
Sbjct:   275 QLSSQKSVPWIPMLKSLPLWAIVVAHFSYNWTFYTLLTLLPTYMKEVLRFNIQENGFLSA 334

Query:   380 LPPLASVLVTSIAAQFADNLIAT-GVETTMVRK 411
             +P     +   ++ Q ADNL A     T  VR+
Sbjct:   335 VPYFGCWVCMILSGQAADNLRAKWNFSTLCVRR 367

GO:0016023 "cytoplasmic membrane-bounded vesicle" evidence=IEA

GO:0015739 "sialic acid transport" evidence=IEA

GO:0015136 "sialic acid transmembrane transporter activity" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005765 "lysosomal membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|E2R8R4 SLC17A5 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 401 (146.2 bits), Expect = 1.7e-40, Sum P(2) = 1.7e-40
 Identities = 94/271 (34%), Positives = 145/271 (53%)

Query:   143 RFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGF 202
             R+ W++   G +  SFF+GY ++Q+PGG++A   GG+ +L  G+L  ++ T   P+ A F
Sbjct:   100 RYQWDAETQGWILGSFFYGYIITQIPGGYIASKVGGKLLLGFGILGTAVFTLFTPIAADF 159

Query:   203 MPG-LVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPP 261
               G L++ R L G+GEGV+  A   + +   P  ERS+ +S  + G   G+V  L L+  
Sbjct:   160 GVGALIVLRALEGLGEGVTFPAMHAMWSSWAPPLERSKLLSISYAGAQLGTVISLPLSGI 219

Query:   262 IIENLGWESVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMG 321
             I   + W  VFY+FG++GI WF  +  L         T++ +      K+ + +SL+   
Sbjct:   220 ICFYMNWTYVFYLFGIVGIIWFILWIFLVSETPETHKTISRQE-----KEYILSSLKNQL 274

Query:   322 ESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILP 381
              S K VPW  + +S  +WA++ AHF  +W  YT L+ LPTY  E L  N+ E   +S LP
Sbjct:   275 SSQKSVPWIPMLKSLPLWAIVVAHFSYNWTFYTLLTLLPTYMKEILRFNVQENGLLSALP 334

Query:   382 PLASVLVTSIAAQFADNLIAT-GVETTMVRK 411
                  L   ++ Q ADNL A     T  VR+
Sbjct:   335 YFGCWLCMILSGQAADNLRAKWNFSTICVRR 365

GO:0016023 "cytoplasmic membrane-bounded vesicle" evidence=IEA

GO:0015739 "sialic acid transport" evidence=IEA

GO:0015136 "sialic acid transmembrane transporter activity" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005765 "lysosomal membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|Q9NRA2 SLC17A5 "Sialin" [Homo sapiens (taxid:9606)]

 Score = 400 (145.9 bits), Expect = 2.2e-40, Sum P(2) = 2.2e-40
 Identities = 96/271 (35%), Positives = 145/271 (53%)

Query:   143 RFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGF 202
             ++ W++   G +  SFF+GY ++Q+PGG++A   GG+ +L  G+L  ++ T   P+ A  
Sbjct:   100 KYQWDAETQGWILGSFFYGYIITQIPGGYVASKIGGKMLLGFGILGTAVLTLFTPIAADL 159

Query:   203 MPG-LVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPP 261
               G L++ R L G+GEGV+  A   + +   P  ERS+ +S  + G   G+V  L L+  
Sbjct:   160 GVGPLIVLRALEGLGEGVTFPAMHAMWSSWAPPLERSKLLSISYAGAQLGTVISLPLSGI 219

Query:   262 IIENLGWESVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMG 321
             I   + W  VFY FG +GI WF    +L     S+      R ++   K+ + +SL    
Sbjct:   220 ICYYMNWTYVFYFFGTIGIFWF----LLWIWLVSDTPQKHKRISHYE-KEYILSSLRNQL 274

Query:   322 ESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILP 381
              S K VPW  I +S  +WA++ AHF  +W  YT L+ LPTY  E L  N+ E  ++S LP
Sbjct:   275 SSQKSVPWVPILKSLPLWAIVVAHFSYNWTFYTLLTLLPTYMKEILRFNVQENGFLSSLP 334

Query:   382 PLASVLVTSIAAQFADNLIAT-GVETTMVRK 411
              L S L   ++ Q ADNL A     T  VR+
Sbjct:   335 YLGSWLCMILSGQAADNLRAKWNFSTLCVRR 365

GO:0006865 "amino acid transport" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0030672 "synaptic vesicle membrane" evidence=IEA

GO:0016020 "membrane" evidence=TAS

GO:0005351 "sugar:hydrogen symporter activity" evidence=TAS

GO:0005765 "lysosomal membrane" evidence=IDA;TAS

GO:0015136 "sialic acid transmembrane transporter activity" evidence=IDA

GO:0015739 "sialic acid transport" evidence=IDA

GO:0005887 "integral to plasma membrane" evidence=TAS

GO:0006820 "anion transport" evidence=TAS

GO:0006811 "ion transport" evidence=TAS

GO:0055085 "transmembrane transport" evidence=TAS

UNIPROTKB|E1C256 SLC17A6 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 382 (139.5 bits), Expect = 7.4e-40, Sum P(2) = 7.4e-40
 Identities = 90/280 (32%), Positives = 139/280 (49%)

Query:   137 IIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALL 196
             II    +F W+    G++  SFFWGY ++Q+PGG+++      +V    +L+ S    L+
Sbjct:   113 IIKEKAKFNWDPETVGMIHGSFFWGYIITQIPGGYISSRLAANRVFGAAILLTSSLNMLI 172

Query:   197 PLLAGFMPGLVLS-RVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAG 255
             P  A    G V+  R+L G+ EGV+  A   + ++  P  ERSR  +  F G   G+V  
Sbjct:   173 PSAARVHYGCVIFVRILQGLVEGVTYPACHGIWSKWAPPLERSRLATTSFCGSYAGAVIA 232

Query:   256 LLLAPPIIENLGWESVFYIF--GLLGIAWFSGFKILQEGETSNGATLAPRSN-YINMKKS 312
             + LA  +++  GW SVFY++  G  GI W+  + ++     +   T+      YI     
Sbjct:   233 MPLAGILVQYTGWSSVFYVYVQGSFGIVWYMFWLLVSYESPAKHPTITDEERRYIEESIG 292

Query:   313 LSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLT 372
              SA+L    E  K  PW+  F S  V+A+I A+FC SW  Y  L   P YF E     ++
Sbjct:   293 ESANLLGAMEKYK-TPWRKFFTSMPVYAIIVANFCRSWTFYLLLISQPAYFEEVFGFEIS 351

Query:   373 EAAWVSILPPLASVLVTSIAAQFADNLIATGV-ETTMVRK 411
             +   +S +P L   ++  I  Q AD L +  +  TT VRK
Sbjct:   352 KVGILSAVPHLVMTIIVPIGGQIADFLRSKQILSTTTVRK 391

GO:0016021 "integral to membrane" evidence=IEA

GO:0001504 "neurotransmitter uptake" evidence=IEA

GO:0005313 "L-glutamate transmembrane transporter activity" evidence=IEA

GO:0008021 "synaptic vesicle" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q3E9A0	ANTR6_ARATH	No assigned EC number	0.6300	0.9078	0.7427	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: scaffold_602135.1 annotation not avaliable (517 aa) (Arabidopsis lyrata)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	423
TIGR00894	465	TIGR00894, 2A0114euk, Na(+)-dependent inorganic ph	1e-38
TIGR00893	399	TIGR00893, 2A0114, D-galactonate transporter	6e-36
cd06174	352	cd06174, MFS, The Major Facilitator Superfamily (M	1e-32
pfam07690	346	pfam07690, MFS_1, Major Facilitator Superfamily	6e-32
TIGR00881	379	TIGR00881, 2A0104, phosphoglycerate transporter fa	3e-17
TIGR00895	398	TIGR00895, 2A0115, benzoate transport	1e-16
TIGR00880	141	TIGR00880, 2_A_01_02, Multidrug resistance protein	1e-14
cd06174	352	cd06174, MFS, The Major Facilitator Superfamily (M	2e-13
COG2814	394	COG2814, AraJ, Arabinose efflux permease [Carbohyd	4e-12
PRK11551	406	PRK11551, PRK11551, putative 3-hydroxyphenylpropio	2e-11
COG2271	448	COG2271, UhpC, Sugar phosphate permease [Carbohydr	7e-11
TIGR00711	485	TIGR00711, efflux_EmrB, drug resistance transporte	1e-10
TIGR00710	385	TIGR00710, efflux_Bcr_CflA, drug resistance transp	2e-07
pfam07690	346	pfam07690, MFS_1, Major Facilitator Superfamily	3e-07
PRK03699	394	PRK03699, PRK03699, putative transporter; Provisio	3e-07
COG0477	338	COG0477, ProP, Permeases of the major facilitator	1e-06
COG0738	422	COG0738, FucP, Fucose permease [Carbohydrate trans	2e-06
TIGR00886	366	TIGR00886, 2A0108, nitrite extrusion protein (nitr	2e-06
TIGR02332	412	TIGR02332, HpaX, 4-hydroxyphenylacetate permease	3e-06
PRK12307	426	PRK12307, PRK12307, putative sialic acid transport	4e-06
pfam00083	449	pfam00083, Sugar_tr, Sugar (and other) transporter	2e-05
COG3104	498	COG3104, PTR2, Dipeptide/tripeptide permease [Amin	3e-05
TIGR00890	377	TIGR00890, 2A0111, oxalate/formate antiporter fami	3e-05
TIGR00883	394	TIGR00883, 2A0106, metabolite-proton symporter	5e-05
TIGR00924	475	TIGR00924, yjdL_sub1_fam, amino acid/peptide trans	6e-05
TIGR00900	365	TIGR00900, 2A0121, H+ Antiporter protein	6e-05
COG2223	417	COG2223, NarK, Nitrate/nitrite transporter [Inorga	8e-05
TIGR00879	481	TIGR00879, SP, MFS transporter, sugar porter (SP)	9e-05
PRK03893	496	PRK03893, PRK03893, putative sialic acid transport	2e-04
PRK11102	377	PRK11102, PRK11102, bicyclomycin/multidrug efflux	5e-04
TIGR00898	505	TIGR00898, 2A0119, cation transport protein	7e-04
TIGR04259	405	TIGR04259, oxa_formateAnti, oxalate/formate antipo	0.001
PRK03633	381	PRK03633, PRK03633, putative MFS family transporte	0.001
TIGR00891	405	TIGR00891, 2A0112, putative sialic acid transporte	0.002

>gnl|CDD|129972 TIGR00894, 2A0114euk, Na(+)-dependent inorganic phosphate cotransporter

 Score =  144 bits (365), Expect = 1e-38
 Identities = 79/272 (29%), Positives = 138/272 (50%), Gaps = 9/272 (3%)

Query: 144 FGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFM 203
           F W+ ++ GL+ SS F+G  + Q+P G+LA  +  +  +  G+ + S+ + ++P  AG  
Sbjct: 71  FKWSGALQGLILSSHFYGQIIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGGG 130

Query: 204 PGLVL-SRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPI 262
             LV+  RV+ G+ +G    A   +I +  P +ERSR +     G   G+   L ++  +
Sbjct: 131 IALVVFCRVIQGLAQGSVSPATHKIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPISGWL 190

Query: 263 IE-NLGWESVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASL-EEM 320
            E   GW  +FY+FG++G AW   + +    + S    ++        KK +++SL  + 
Sbjct: 191 CESWGGWPMIFYVFGIVGCAWSLLWFVFPADDPSIHPCIS-----KFEKKYINSSLQGQK 245

Query: 321 GESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSIL 380
           G + + +P KAI +S  VWA+ +A F   W +    ++LPT+ S  L ++  E   +S L
Sbjct: 246 GSTRQSLPIKAIPKSLPVWAIWFAIFGHFWLYTILPTYLPTFISWVLRVSGKENGLLSSL 305

Query: 381 PPLASVLVTSIAAQFADNLIATGV-ETTMVRK 411
           P L + L +  A   AD L ++     T  RK
Sbjct: 306 PYLFAWLCSIFAGYLADFLKSSKTLSLTAARK 337

[Transport and binding proteins, Anions]. Length = 465

>gnl|CDD|233174 TIGR00893, 2A0114, D-galactonate transporter

 Score =  135 bits (343), Expect = 6e-36
 Identities = 78/268 (29%), Positives = 120/268 (44%), Gaps = 3/268 (1%)

Query: 121 LAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRK 180
           L  VI  +D+ NLS A   +    G +++  G V S+F WGY + Q PGGWL   FG RK
Sbjct: 1   LVTVINYLDRANLSFAAPMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARK 60

Query: 181 VLQTGVLIWSLATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRA 240
            L   ++IW + T L      +   L + RVL+G  E         ++A   P  ER+ A
Sbjct: 61  TLAVFIVIWGVFTGLQAFAGAY-VSLYILRVLLGAAEAPFFPGIILIVASWFPASERATA 119

Query: 241 VSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAW-FSGFKILQEGETSNGAT 299
           VS        G + G  L   I+ +  W+  F I G+LGI W     K + +        
Sbjct: 120 VSIFNSAQGLGGIIGGPLVGWILIHFSWQWAFIIEGVLGIIWGVLWLKFIPDPPQKAK-W 178

Query: 300 LAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLSWL 359
           L     YI +   L+    +   + K    K + + + VW +    F  + G    L+W 
Sbjct: 179 LTEEEKYIVVGGLLAEQQGKGPSTPKKYQIKELLKDRRVWGLALGQFLVNIGLGFFLTWF 238

Query: 360 PTYFSEELSLNLTEAAWVSILPPLASVL 387
           PTY  +E  L++ EA +++ LP +   +
Sbjct: 239 PTYLVQERGLSILEAGFMASLPGIVGFI 266

[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 399

>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

 Score =  125 bits (316), Expect = 1e-32
 Identities = 78/282 (27%), Positives = 124/282 (43%), Gaps = 46/282 (16%)

Query: 116 IGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKI 175
           +    L F +  +D+  LS A+  ++   G ++S AGL+ S+F  GYAL  L  G+L+  
Sbjct: 1   LLLLFLGFFLSGLDRGLLSPALPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDR 60

Query: 176 FGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLE 235
           FG R+VL  G+L+++L + LL   +     L++ R L+G+G G    AA  LIA   P +
Sbjct: 61  FGRRRVLLLGLLLFALGSLLLAFASSL-WLLLVGRFLLGLGGGALYPAAAALIAEWFPPK 119

Query: 236 ERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFSGFKILQEGETS 295
           ER RA+     G   G++ G LL   + E+LGW  +F I  +LG+               
Sbjct: 120 ERGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAILGLLLA------------ 167

Query: 296 NGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTC 355
                                          +    + R   +  +  A F  S+G+Y  
Sbjct: 168 -------------------------------LLLLFLLR--LLLLLALAFFLLSFGYYGL 194

Query: 356 LSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFAD 397
           L++LP Y  E L L+  EA  +  L  L  +L   +    +D
Sbjct: 195 LTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSD 236

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352

>gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily

 Score =  124 bits (312), Expect = 6e-32
 Identities = 67/277 (24%), Positives = 109/277 (39%), Gaps = 18/277 (6%)

Query: 121 LAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRK 180
            AF+      +      + ++   G + +  GL+ ++F  GYAL+Q   G L+  FG R+
Sbjct: 4   AAFLAGLGRSLLGPALPLYLAEDLGISPTEIGLLLTAFSLGYALAQPLAGRLSDRFGRRR 63

Query: 181 VLQTGVLIWSLATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRA 240
           VL  G+L+++L   LL   +     L++ RVL G+G G    AA  LIA   P EER RA
Sbjct: 64  VLLIGLLLFALGLLLLLFASSL-WLLLVLRVLQGLGGGALFPAAAALIADWFPPEERGRA 122

Query: 241 VSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFSGFKILQEGETSNGATL 300
           +  +  G   G+  G LL   +    GW + F I  +L +       +L           
Sbjct: 123 LGLLSAGFGLGAALGPLLGGLLASLFGWRAAFLILAILALLAAVLAALL----------- 171

Query: 301 APRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLSWLP 360
                                     VP   +     V  ++ A     +  +  L++LP
Sbjct: 172 -----LPRPPPESKRPKPAEEAPAPLVPAWKLLLRDPVLWLLLALLLFGFAFFALLTYLP 226

Query: 361 TYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFAD 397
            Y  E L L+   A  +  L  L   +   +  + +D
Sbjct: 227 LY-QEVLGLSALLAGLLLGLAGLLGAIGRLLLGRLSD 262

Length = 346

>gnl|CDD|233167 TIGR00881, 2A0104, phosphoglycerate transporter family protein

 Score = 82.8 bits (205), Expect = 3e-17
 Identities = 62/288 (21%), Positives = 114/288 (39%), Gaps = 19/288 (6%)

Query: 121 LAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRK 180
           + +    + + N ++A+  +    G + +  GL+ SSF   Y +S+   G ++     R 
Sbjct: 2   IGYAAYYLVRKNFALAMPYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRV 61

Query: 181 VLQTGVLIWSLATALLPLLAGFMPGL---VLSRVLVGIGEGVSPSAATDLIARSIPLEER 237
            L  G+++ ++      L  GF   L        L GI +G+        + +     ER
Sbjct: 62  FLPIGLILCAIVN----LFFGFSTSLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSER 117

Query: 238 SRAVSFVFGGLSFGSVAGLLLAPPII-----ENLGWESVFYIFGLLGIAW-FSGFKILQE 291
              VSF     +     G  L PP++     E   W  VF + G++ I      F +L++
Sbjct: 118 GTWVSF----WNCSHNVGGGLLPPLVLFGIAELYSWHWVFIVPGIIAIIVSLICFLLLRD 173

Query: 292 GETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWG 351
              S G  L P     N +    A  +E   + K +  + +  +K +W +   +      
Sbjct: 174 SPQSCG--LPPAEEMPNEEPDGDAEKKEEELTKKQIFLQYVLLNKVLWYISLGYVFVYVV 231

Query: 352 HYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNL 399
               L W P Y ++E   +  +A+W   L  L  ++ T +A   +D L
Sbjct: 232 RTGILDWSPLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKL 279

[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 379

>gnl|CDD|233175 TIGR00895, 2A0115, benzoate transport

 Score = 80.9 bits (200), Expect = 1e-16
 Identities = 75/311 (24%), Positives = 117/311 (37%), Gaps = 24/311 (7%)

Query: 107 KNIPQRYKLIGTTSLAFVICNMDKVNLSVAIIPMSH---RFGWNSSVAGLVQSSFFWGYA 163
           K    RY+      L+F+I  MD  +L+            +G +    G + S+   G A
Sbjct: 8   KQPLSRYQWR-AIILSFLIMLMDGYDLAAMGFAAPAISAEWGLDPVQLGFLFSAGLIGMA 66

Query: 164 LSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSRVLVGIGEGVSPSA 223
              L  G LA   G R+VL   +L++S+ T L   LA  +  L++ R L G+G G     
Sbjct: 67  FGALFFGPLADRIGRRRVLLWSILLFSVFTLLC-ALATNVTQLLILRFLAGLGLGGLMPN 125

Query: 224 ATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGI--A 281
              L++   P   R  AV  +F G   G+  G  LA  +I   GW S+FY+ G+  +   
Sbjct: 126 LNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGWRSLFYVGGIAPLLLL 185

Query: 282 WFSGF------KILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIF-- 333
                        L         T+    N I  +    A      +       +++F  
Sbjct: 186 LLLMRFLPESIDFLVS---KRPETVRRIVNAIAPQMQAEAQSALPEQKATQGTKRSVFKA 242

Query: 334 -----RSKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLV 388
                 ++    +   +F    G Y   +WLP     EL  +L+ AA    L     V+ 
Sbjct: 243 LFQGKTARITVLLWLLYFMLLVGVYFLTNWLP-KLMVELGFSLSLAATGGALFNFGGVIG 301

Query: 389 TSIAAQFADNL 399
           + I    AD L
Sbjct: 302 SIIFGWLADRL 312

[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 398

>gnl|CDD|233166 TIGR00880, 2_A_01_02, Multidrug resistance protein

 Score = 70.4 bits (173), Expect = 1e-14
 Identities = 45/139 (32%), Positives = 67/139 (48%), Gaps = 6/139 (4%)

Query: 158 FFWGYALSQL----PGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSRVLV 213
              GYAL QL      G L   FG + VL  G+ I+ L+TA+   L+  +  L+++R L 
Sbjct: 3   LLAGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMF-ALSSNITVLIIARFLQ 61

Query: 214 GIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFY 273
           G G   +  A   LIA   P EER  A+  +  G++ G + G  L   + + LGW + F 
Sbjct: 62  GFGAAFALVAGAALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFL 121

Query: 274 IFGLLGIAWF-SGFKILQE 291
              +L +A F     +L E
Sbjct: 122 FLAILALAAFILLAFLLPE 140

Length = 141

>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

 Score = 70.4 bits (173), Expect = 2e-13
 Identities = 42/144 (29%), Positives = 65/144 (45%)

Query: 140 MSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLL 199
           +    G +++ AGL+ S F  G  L  L GG L+   G R++L    L+ +    LL  L
Sbjct: 202 LQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLAL 261

Query: 200 AGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLA 259
           A  +  L+++ +L+G G G +  A   L +   P E R  A        S G   G LLA
Sbjct: 262 APSLALLLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLA 321

Query: 260 PPIIENLGWESVFYIFGLLGIAWF 283
             +++  G+  VF I   L +   
Sbjct: 322 GLLLDTGGYGGVFLILAALALLAA 345

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352

>gnl|CDD|225371 COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]

 Score = 66.9 bits (164), Expect = 4e-12
 Identities = 55/259 (21%), Positives = 101/259 (38%), Gaps = 24/259 (9%)

Query: 139 PMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPL 198
           P++   G +   AG + +++  G AL       L      R++L   + ++ ++  L  L
Sbjct: 38  PIAADLGVSEGAAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALFIVSNLLSAL 97

Query: 199 LAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLL 258
              F   L+L+R L G+  GV  S A  L AR +P  +R RA++ VF GL+  +V G+ L
Sbjct: 98  APSFAV-LLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPL 156

Query: 259 APPIIENLGWESVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLE 318
              + +  GW + F    +L +                   L P         SL   L 
Sbjct: 157 GTFLGQLFGWRATFLAIAVLALLAL----------LLLWKLLPPSEI----SGSLPGPLR 202

Query: 319 EMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVS 378
            +           + R   V   + A F    GH+   +++  +       +++  + V 
Sbjct: 203 TLL---------RLLRRPGVLLGLLATFLFMTGHFALYTYIRPFLESVAGFSVSAVSLVL 253

Query: 379 ILPPLASVLVTSIAAQFAD 397
           +   +A  +   +  + AD
Sbjct: 254 LAFGIAGFIGNLLGGRLAD 272

Length = 394

>gnl|CDD|236927 PRK11551, PRK11551, putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

 Score = 65.0 bits (159), Expect = 2e-11
 Identities = 53/173 (30%), Positives = 84/173 (48%), Gaps = 24/173 (13%)

Query: 118 TTSLAFVICNMDKVNLS---VAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAK 174
           T  L F++  ++ ++L    VA   M+  FG + +  G   S+   G     L GG LA 
Sbjct: 16  TIGLCFLVALLEGLDLQSAGVAAPRMAQEFGLDVAQMGWAFSAGILGLLPGALLGGRLAD 75

Query: 175 IFGGRKVLQTGVL---IWSLATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIA-- 229
             G +++L   V    ++SLATA     A   P L+++R+L G+G G    A  +LIA  
Sbjct: 76  RIGRKRILIVSVALFGLFSLATAQ----AWDFPSLLVARLLTGVGLG---GALPNLIALT 128

Query: 230 -RSIPLEERSRAVSFVFGGLSFG----SVAGLLLAPPIIENLGWESVFYIFGL 277
             ++    R  AVS ++ G+ FG    SV G+L A     +  W  +FY+ G+
Sbjct: 129 SEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLAA----GDAAWRHIFYVGGV 177

Length = 406

>gnl|CDD|225180 COG2271, UhpC, Sugar phosphate permease [Carbohydrate transport and metabolism]

 Score = 63.4 bits (155), Expect = 7e-11
 Identities = 68/280 (24%), Positives = 112/280 (40%), Gaps = 23/280 (8%)

Query: 132 NLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSL 191
           N ++A+  +    G + +  G++ S+F   Y +S+   G L+     R  +  G+++   
Sbjct: 47  NFNLAMPALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFGLIL--- 103

Query: 192 ATALLPLLAGFMPGLVLSRVLVGI-----GEGVSPSAATDLIARSIPLEERSRAVSFV-- 244
            +A++ +L GF P L L  VL  +     G G  P A T  I      +ER    S    
Sbjct: 104 -SAIVNILFGFSPSLFLFAVLWVLNGWFQGMGWPPCART--ITHWFSRKERGTWWSIWNT 160

Query: 245 ---FGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAW-FSGFKILQEGETSNGATL 300
               GG     VA L        + GW + FY  G++ I        +L++   S G  L
Sbjct: 161 SHNIGGALAPLVALLAF---FAFHGGWRAAFYFPGIIAIIVALILLFLLRDRPQSEG--L 215

Query: 301 APRSNYIN-MKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLSWL 359
            P   Y     +      E  G +   +  K + ++K +W +  A+       Y    W 
Sbjct: 216 PPIEEYRGDPLEIYEEEKENEGLTAWQIFVKYVLKNKLIWLLALANVFVYVVRYGINDWG 275

Query: 360 PTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNL 399
           P Y SE    +L +A W   L  +A +  T +A   +D L
Sbjct: 276 PLYLSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKL 315

Length = 448

>gnl|CDD|129794 TIGR00711, efflux_EmrB, drug resistance transporter, EmrB/QacA subfamily

 Score = 62.8 bits (153), Expect = 1e-10
 Identities = 49/181 (27%), Positives = 76/181 (41%), Gaps = 8/181 (4%)

Query: 115 LIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAK 174
           L     L   +  +D   ++VAI  ++   G + S    V +S+    A+S    GWLAK
Sbjct: 3   LTIVLMLGTFMAVLDSTIVNVAIPTIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAK 62

Query: 175 IFGGRKVLQTGVLIWSLATALLPLLAGFMPG---LVLSRVLVGIGEGVSPSAATDLIARS 231
            FG R++       ++L +    LL G  P    +++ RV+ G G G     +   +   
Sbjct: 63  RFGTRRLFLISTFAFTLGS----LLCGVAPNLELMIIFRVIQGFGGGPLIPLSFSTLLNI 118

Query: 232 IPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWF-SGFKILQ 290
            P E+R RA++     +      G  L   IIEN  W  +F I   +GI      F IL 
Sbjct: 119 YPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENYHWRWIFLINVPIGIIVVVVAFFILP 178

Query: 291 E 291
            
Sbjct: 179 R 179

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli [Cellular processes, Toxin production and resistance, Transport and binding proteins, Other]. Length = 485

>gnl|CDD|233099 TIGR00710, efflux_Bcr_CflA, drug resistance transporter, Bcr/CflA subfamily

 Score = 52.0 bits (125), Expect = 2e-07
 Identities = 51/210 (24%), Positives = 83/210 (39%), Gaps = 38/210 (18%)

Query: 151 AGLVQ---SSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLV 207
           A +VQ   + +  G+A  QL  G L+  +G R VL  G+ I++L+ +L   L+  +  L+
Sbjct: 39  ASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALS-SLGLALSNNIETLL 97

Query: 208 LSRVLVGIGEGVSPSAATDLIARSI-PLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENL 266
           + R +   G   + S  +  + R I P EE SR  S +   L+       LL   I+  L
Sbjct: 98  VLRFVQAFG-ASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVWL 156

Query: 267 GWESVFYIFGLLGIA-----WFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMG 321
            W ++F    L GI      +F                + P +     +  +S   E   
Sbjct: 157 SWHAIFAFLSLAGILLSALIFF----------------ILPETLPYEARIQISTYFETFL 200

Query: 322 ESLKDVPWKAIFRSKAVW--AMIYAHFCGS 349
                     + +SK  W  A+IY    G 
Sbjct: 201 ---------LLLKSKMFWGYALIYGASFGG 221

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. Length = 385

>gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily

 Score = 51.7 bits (124), Expect = 3e-07
 Identities = 33/125 (26%), Positives = 53/125 (42%), Gaps = 2/125 (1%)

Query: 133 LSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLA 192
           L   +       G ++ +AGL+        A+ +L  G L+   G R+ L   +L+  LA
Sbjct: 221 LLTYLPLYQEVLGLSALLAGLLLGLAGLLGAIGRLLLGRLSDRLGRRRRLLLALLLLILA 280

Query: 193 TALLPLLAGF--MPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSF 250
              L LL+       L+++ +L+G G G+   A   L++   P EER  A        S 
Sbjct: 281 ALGLALLSLTESSLWLLVALLLLGFGAGLVFPALNALVSDLAPKEERGTASGLYNTAGSL 340

Query: 251 GSVAG 255
           G   G
Sbjct: 341 GGALG 345

Length = 346

>gnl|CDD|235151 PRK03699, PRK03699, putative transporter; Provisional

 Score = 51.9 bits (125), Expect = 3e-07
 Identities = 44/221 (19%), Positives = 78/221 (35%), Gaps = 52/221 (23%)

Query: 169 GGWLAKIFGGRKVLQTG---VLIWSLATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAAT 225
             WL +I   ++ L  G   +++          LA F     ++  ++G+  G++ S  T
Sbjct: 62  NAWLMEIIPLKRQLIFGFALMILAVAGLMFSHSLALFS----IAMFVLGVVSGITMSIGT 117

Query: 226 DLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPII------ENLGWESVFYIFGLLG 279
            LI      E + R    +F   SF S+AG++   PII       ++ W  V+   GL+ 
Sbjct: 118 FLITHV--YEGKQRGSRLLFTD-SFFSMAGMIF--PIIAAYLLARSIEWYWVYACIGLVY 172

Query: 280 -----IAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFR 334
                +  FS F  L +                        + E+ G             
Sbjct: 173 VAIFILTLFSEFPALGKHAPKADK---------------PVAKEKWGIG----------- 206

Query: 335 SKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAA 375
              V  +  A         T +SW+P Y  ++  ++L +A 
Sbjct: 207 ---VLFLAIAALLYILAQLTFISWVPEYAQKKFGMSLEDAG 244

Length = 394

>gnl|CDD|223553 COG0477, ProP, Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]

 Score = 50.1 bits (118), Expect = 1e-06
 Identities = 57/301 (18%), Positives = 107/301 (35%), Gaps = 11/301 (3%)

Query: 115 LIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAK 174
           L    +   +  ++  ++ ++ ++  +        + GL+ S+FF GYA+  L  G L  
Sbjct: 5   LALALAALLLGLDLGLLSPALPLLLSTLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGD 64

Query: 175 IFGGRKVLQTGVLIWSLATALLPLLAGF-MPGLVLSRVLVGIGEGVSPSAATDLIARSIP 233
            +G RKVL  G+L++ L T LL L     +  L++ R+L G+G G     A+ L++   P
Sbjct: 65  RYGRRKVLIIGLLLFLLGTLLLALAPNVGLALLLILRLLQGLGGGGLLPVASALLSEWFP 124

Query: 234 LE-ERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFSGFKILQEG 292
              ER  AV  V  G     +A   L   ++           F L  +       ++   
Sbjct: 125 EATERGLAVGLVTLGAGALGLALGPLLAGLLLGALLWGWRAAFLLAALLGLLLLILVLLL 184

Query: 293 ETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRS---------KAVWAMIY 343
           +    A   P +  + + +     L  +   L  +    +              +  +  
Sbjct: 185 DLLLAAPRLPLAVGLALIELGKLLLLLLILLLGGLVLLLLGLYLSAAGFGLRALLLGLGL 244

Query: 344 AHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATG 403
           A      G    L  LP        L+    A   +L  +   L   +      +L+   
Sbjct: 245 ALLALFVGALILLVLLPILLGAAGGLSALVGAAGGLLALILLGLAGLLGTLVGGSLLVDR 304

Query: 404 V 404
           +
Sbjct: 305 L 305

Length = 338

>gnl|CDD|223809 COG0738, FucP, Fucose permease [Carbohydrate transport and metabolism]

 Score = 49.6 bits (119), Expect = 2e-06
 Identities = 50/235 (21%), Positives = 89/235 (37%), Gaps = 19/235 (8%)

Query: 151 AGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALL---PLLAGFMPGLV 207
           A L+Q +FF GY +  LP G L K  G +  +  G+L++++  AL         +   LV
Sbjct: 50  ASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGAALFWPAASSKSYGFFLV 109

Query: 208 LSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFV-----FGGLSFGSVAGLLLAPPI 262
              +L   G G+  +AA   +      E  +  ++        G +    +   L+   +
Sbjct: 110 ALFIL-ASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLILSGV 168

Query: 263 IENLGWESVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKK--SLSASLEEM 320
              +    +  I G    +    + IL          L   +  I + K   L  +   +
Sbjct: 169 ALTMSAAQILAIKGADASSVQFPYLIL-------AGLLVLLAVLILLSKLPDLQVAAPSL 221

Query: 321 GESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAA 375
           G S       ++F++K +   + A F          S+L +Y  E L LN  +AA
Sbjct: 222 GASGSAGL-SSLFQNKHLRLGVLAIFLYVGAEVAIGSFLVSYLEELLGLNEQQAA 275

Length = 422

>gnl|CDD|233170 TIGR00886, 2A0108, nitrite extrusion protein (nitrite facilitator)

 Score = 49.3 bits (118), Expect = 2e-06
 Identities = 50/250 (20%), Positives = 83/250 (33%), Gaps = 25/250 (10%)

Query: 163 ALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSRVLVGIGEGVSPS 222
           A+ ++  G+L   FG R      +L+ ++      L       L+L R+ +GI  G S +
Sbjct: 51  AVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWAGLAVQSYSVLLLLRLFIGIA-GGSFA 109

Query: 223 AATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENL------------GWES 270
           +    I+   P + +  A+    G  + G      + PPII +L            GW  
Sbjct: 110 SCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAHLAWGWAF 169

Query: 271 VFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWK 330
           V       GI       I        GA   P            A       +L D    
Sbjct: 170 V---IVPAGILLLPALLIF-----FVGADTPPGKPATGKLSFKGARWSVGTGALGDQ--L 219

Query: 331 AIFRSKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEA-AWVSILPPLASVLVT 389
            +FR +  W +   +           S    +F ++  L+   A A+ S+   L   L  
Sbjct: 220 KVFRDRHTWILALLYSVTFGSFLGVSSIFAMFFKDQFGLSKVTAGAYASLG-GLLGSLAR 278

Query: 390 SIAAQFADNL 399
            +    +D L
Sbjct: 279 PLGGAISDRL 288

[Transport and binding proteins, Anions]. Length = 366

>gnl|CDD|131385 TIGR02332, HpaX, 4-hydroxyphenylacetate permease

 Score = 48.8 bits (116), Expect = 3e-06
 Identities = 44/181 (24%), Positives = 82/181 (45%), Gaps = 12/181 (6%)

Query: 114 KLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLA 173
           +LI    + F+   +D++N+  A + M    G ++++ GL  + F+  Y +  +P   + 
Sbjct: 8   RLIIFLFILFIFSFLDRINIGFAGLTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIML 67

Query: 174 KIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIP 233
            I G R+ +   +++W +A+    + A     L L R+LVGI E          +    P
Sbjct: 68  AIIGARRWIAGIMVLWGIAST-ATMFATGPESLYLLRILVGIAEAGFLPGILLYLTFWFP 126

Query: 234 LEERSRAVSFVFGGLSFGSVAGLLLAPPIIE-----NL-GWESVFYIFG----LLGI-AW 282
              R+RA +     +      GL+L+  I+       L GW+ +F + G    +LG+  W
Sbjct: 127 AYFRARANALFMIAMPVTMALGLILSGYILALDGLMALKGWQWLFLLEGFPSVILGVMTW 186

Query: 283 F 283
           F
Sbjct: 187 F 187

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PMID:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. Length = 412

>gnl|CDD|237051 PRK12307, PRK12307, putative sialic acid transporter; Provisional

 Score = 48.4 bits (115), Expect = 4e-06
 Identities = 43/182 (23%), Positives = 77/182 (42%), Gaps = 3/182 (1%)

Query: 97  VGRASYWPPWKNIPQRYKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQS 156
           + +   W      PQ+  L  +  L +V    D + +   +  +    G        + +
Sbjct: 2   IAKFFPWYSEITRPQKNALF-SAWLGYVFDGFDFMLIFYIMYLIKADLGLTDMEGAFLAT 60

Query: 157 SFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSRVLVGIG 216
           + F G        G LA  FG + ++   ++ +S+ T L  L +G +  L LSR +VG+G
Sbjct: 61  AAFIGRPFGGALFGLLADKFGRKPLMMWSIVAYSVGTGLSGLASGVIM-LTLSRFIVGMG 119

Query: 217 EGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFG 276
                + A+     S P   +S+A +F+  G   G++      P   E  GW + F++ G
Sbjct: 120 MAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFAEAYGWRAAFFV-G 178

Query: 277 LL 278
           LL
Sbjct: 179 LL 180

Length = 426

>gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter

 Score = 46.5 bits (111), Expect = 2e-05
 Identities = 29/113 (25%), Positives = 48/113 (42%), Gaps = 5/113 (4%)

Query: 148 SSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLV 207
           + ++GL+ S F  G  +  L  G L   FG +K L  G +++ +   L     G    ++
Sbjct: 45  TVLSGLIVSIFSVGCLIGSLFAGKLGDRFGRKKSLLIGNVLFVIGALLQGFAKGKSFYML 104

Query: 208 -LSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLA 259
            + RV+VG+G G         I+   P + R    S        G   G+L+A
Sbjct: 105 IVGRVIVGLGVGGISVLVPMYISEIAPKKLRGALGSL----YQLGITFGILVA 153

Length = 449

>gnl|CDD|225646 COG3104, PTR2, Dipeptide/tripeptide permease [Amino acid transport and metabolism]

 Score = 45.7 bits (109), Expect = 3e-05
 Identities = 31/150 (20%), Positives = 64/150 (42%), Gaps = 10/150 (6%)

Query: 152 GLVQSSFFWGYALSQLPGGWLA-KIFGGRKVLQTGVLIWSLATALLPLLAGF-MPGLVLS 209
           GL  +     Y L+ + GGWLA ++ G R+ +  G ++ ++   +L + +     GL + 
Sbjct: 65  GLFSAYGSLVY-LTPIIGGWLADRVLGTRRTIVLGAILMAIGHLVLAISSVSGPGGLYIG 123

Query: 210 RVLVGIGEGVSPSAATDLIARSIPLEE--RSRAVSFVFGGLSFGSVAGLLLAPPIIENLG 267
             L+ +G G+     + L+    P ++  R    +  + G++ GS+   ++   +  N G
Sbjct: 124 LALIIVGTGLFKPNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPIITGLLAINYG 183

Query: 268 WESVFYIFGL-----LGIAWFSGFKILQEG 292
           W   F +  +     L I       +   G
Sbjct: 184 WHVGFGLAAVGMIIGLVIFLLGRRHVKGIG 213

Length = 498

>gnl|CDD|233171 TIGR00890, 2A0111, oxalate/formate antiporter family transporter

 Score = 45.5 bits (108), Expect = 3e-05
 Identities = 34/140 (24%), Positives = 56/140 (40%), Gaps = 2/140 (1%)

Query: 139 PMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPL 198
           P+   FG   +   +  +    G A+S   GG LA  FG R V   G +++ L      +
Sbjct: 28  PLGRYFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGLGFTFYAI 87

Query: 199 LAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLL 258
               +  L L+  L   G G++   A +   +  P ++R  A   + GG   GS     L
Sbjct: 88  ADS-LAALYLTYGLASAGVGIAYGIALNTAVKWFP-DKRGLASGIIIGGYGLGSFILSPL 145

Query: 259 APPIIENLGWESVFYIFGLL 278
              +I   G  + F   G++
Sbjct: 146 ITSVINLEGVPAAFIYMGII 165

This subfamily belongs to the major facilitator family. Members include the oxalate/formate antiporter of Oxalobacter formigenes, where one substrate is decarboxylated in the cytosol into the other to consume a proton and drive an ion gradient [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 377

>gnl|CDD|233168 TIGR00883, 2A0106, metabolite-proton symporter

 Score = 45.0 bits (107), Expect = 5e-05
 Identities = 53/242 (21%), Positives = 85/242 (35%), Gaps = 31/242 (12%)

Query: 170 GWLAKIFGGRKVLQTGVLIWSLATALLPLLAG------FMPG-LVLSRVLVGIGEGVSPS 222
           G      G +K L   +L+  + T L+ LL        + P  L+L+R++ G   G    
Sbjct: 56  GHFGDRIGRKKTLVITLLMMGIGTLLIGLLPSYATIGIWAPILLLLARLIQGFSLGGEWG 115

Query: 223 AATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFG---LLG 279
            A   +A   P  +R    SF       G+  GLLLA      L    + Y+ G   LL 
Sbjct: 116 GAALYLAEYAPPGKRGFYGSFQQ----VGAPVGLLLA-----ALTVLLLSYLLGDDALLE 166

Query: 280 IAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLK--DVPWKAIFRS-- 335
             W   F +         A L     Y+      +   E+  E  K    P         
Sbjct: 167 WGWRIPFLV--------SAVLVLIGLYLRRNLEETPVFEKAQEKHKKKRGPIAETLTKHR 218

Query: 336 KAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQF 395
           K     +      +   Y   ++LPTY ++ L L+   A  V +L  +   +   ++   
Sbjct: 219 KPFLLGLGLVIATTTTFYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGAL 278

Query: 396 AD 397
           +D
Sbjct: 279 SD 280

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc [Transport and binding proteins, Unknown substrate]. Length = 394

>gnl|CDD|233189 TIGR00924, yjdL_sub1_fam, amino acid/peptide transporter (Peptide:H+ symporter), bacterial

 Score = 44.8 bits (106), Expect = 6e-05
 Identities = 25/143 (17%), Positives = 55/143 (38%), Gaps = 14/143 (9%)

Query: 145 GWNSSVAGLVQSSFFWGYALSQLPGGWLA-KIFGGRKVLQTG---VLIWSLATALLPLLA 200
           G++   A ++  ++     L    G W   +++G +K +  G   +++     A+     
Sbjct: 44  GFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLMLGHFMLAMSIYPD 103

Query: 201 GFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSR---AVSFVFGGLSFGSVAGLL 257
               GL      + +G G+  +  + ++ +     +  R     +  +  ++ GS    L
Sbjct: 104 LIFYGLGT----IAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPL 159

Query: 258 LAPPIIENLGWESVFYIFGLLGI 280
           LA  I EN G+      F L  +
Sbjct: 160 LAGVIAENYGYH---VGFNLAAV 179

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists [Transport and binding proteins, Amino acids, peptides and amines]. Length = 475

>gnl|CDD|162098 TIGR00900, 2A0121, H+ Antiporter protein

 Score = 44.6 bits (106), Expect = 6e-05
 Identities = 35/135 (25%), Positives = 56/135 (41%), Gaps = 2/135 (1%)

Query: 135 VAIIPM--SHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLA 192
           VA+ P   S   G  S+  G V ++F  G  L  L  G L + F    ++   + +  LA
Sbjct: 231 VALFPYVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYFKRMALMTGAIFVIGLA 290

Query: 193 TALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGS 252
             ++ L     P  ++    +G+G G        L+ R +P E   R     F       
Sbjct: 291 ILVVGLTPPNFPLFLVLWFAIGVGYGPINVPQGTLLQRRVPAELLGRVFGAQFSLSHAAW 350

Query: 253 VAGLLLAPPIIENLG 267
             GL+LA P+ ++LG
Sbjct: 351 PLGLILAGPLADHLG 365

[Transport and binding proteins, Cations and iron carrying compounds]. Length = 365

>gnl|CDD|225133 COG2223, NarK, Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

 Score = 44.2 bits (105), Expect = 8e-05
 Identities = 59/283 (20%), Positives = 105/283 (37%), Gaps = 26/283 (9%)

Query: 119 TSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGG 178
           ++LAF +  M     S   + +   FG +    GL+ +      AL +LP G+L   FGG
Sbjct: 19  STLAFDVGFMVWTLFSPLGVFIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRFGG 78

Query: 179 RKVLQTGVLIWSLATALLPLLAGFMPG---LVLSRVLVGIGEGVSPSAATDLIARSIPLE 235
           RK     +L+  +    L   A   P    L++  +L+G+  G S +      +   P +
Sbjct: 79  RKWTILSMLLLLIPCLGL-AFAVTYPSTWQLLVIGLLLGLA-GASFAVGMPNASFFFP-K 135

Query: 236 ERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFSGFKILQEGETS 295
           E+      + G  + G     L+AP +    G+ +   + G+  +A      +   G   
Sbjct: 136 EKQGLALGIAGAGNLGVAVAQLVAPLVAVAFGFLAWRNVAGIYVVALAIAAVLAWLGMND 195

Query: 296 NGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTC 355
                A                            KA+F +K  W +   +F  ++G +  
Sbjct: 196 VPEHRASVK------------------PQLPAQLKAVFSNKDTWLLSLLYF-ATFGGFVG 236

Query: 356 LS-WLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFAD 397
            S +LP Y   +  L+   A  ++ L PL   L   +    +D
Sbjct: 237 FSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSD 279

Length = 417

>gnl|CDD|233165 TIGR00879, SP, MFS transporter, sugar porter (SP) family

 Score = 44.3 bits (105), Expect = 9e-05
 Identities = 34/124 (27%), Positives = 56/124 (45%), Gaps = 6/124 (4%)

Query: 138 IPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLP 197
              ++   ++SS+ GLV S F  G  +  L  GWL+  FG +K L    L++ +   L+ 
Sbjct: 60  FTSANSDSYSSSLWGLVVSIFLVGGFIGALFAGWLSDRFGRKKSLLIIALLFVIGAILMG 119

Query: 198 LLAGFMPGLVL--SRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAG 255
           L A  +   +L   RVL+GIG G++ +     ++   P   R    S            G
Sbjct: 120 LAAFALSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLY----QLAITFG 175

Query: 256 LLLA 259
           +L+A
Sbjct: 176 ILVA 179

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 481

>gnl|CDD|179668 PRK03893, PRK03893, putative sialic acid transporter; Provisional

 Score = 43.5 bits (103), Expect = 2e-04
 Identities = 34/110 (30%), Positives = 60/110 (54%), Gaps = 10/110 (9%)

Query: 176 FGGRKVLQTGVLIWSLATALLPLLAGFMPG---LVLSRVLVGIG-EGVSPSAATDLIARS 231
           +G R  +   ++++S+ T    L  GF PG   L ++R+++G+G  G   S+AT +I  S
Sbjct: 82  YGRRLAMVISIVLFSVGT----LACGFAPGYWTLFIARLVIGMGMAGEYGSSATYVI-ES 136

Query: 232 IPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIA 281
            P   R++A  F+  G S G+V    +   ++   GW ++F+I G+L I 
Sbjct: 137 WPKHLRNKASGFLISGFSIGAVVAAQVYSLVVPVWGWRALFFI-GILPII 185

Length = 496

>gnl|CDD|182964 PRK11102, PRK11102, bicyclomycin/multidrug efflux system; Provisional

 Score = 41.8 bits (99), Expect = 5e-04
 Identities = 44/139 (31%), Positives = 68/139 (48%), Gaps = 16/139 (11%)

Query: 151 AGLVQ---SSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLV 207
           AG VQ   S++  G+A+ QL  G +A  FG + V+  G L+++LA     L    +  L+
Sbjct: 25  AGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALAQT-IDQLI 83

Query: 208 LSRVLVGIGEGVSPSAATDLIARSI-PLEERSRAVSFVFGGLSFGSVAGLLLAPPIIEN- 265
             R L G+    + S   + + R + P EE SR +SFV   L   ++A LL   PII   
Sbjct: 84  YMRFLHGLA-AAAASVVINALMRDMFPKEEFSRMMSFVT--LVM-TIAPLL--APIIGGW 137

Query: 266 ----LGWESVFYIFGLLGI 280
                 W ++F++  L  I
Sbjct: 138 LLVWFSWHAIFWVLALAAI 156

Length = 377

>gnl|CDD|233176 TIGR00898, 2A0119, cation transport protein

 Score = 41.5 bits (98), Expect = 7e-04
 Identities = 36/117 (30%), Positives = 57/117 (48%), Gaps = 9/117 (7%)

Query: 147 NSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGL 206
           ++    L QS FF G  L     G+L+  FG +KVL    L+ +L TA+  +L  F P  
Sbjct: 125 DAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVL----LLSTLVTAVSGVLTAFSPNY 180

Query: 207 ---VLSRVLVGIGE-GVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLA 259
              ++ R+LVG+G  G+   A   L    +P ++R+   + +    S G V   L+A
Sbjct: 181 TVFLVFRLLVGMGIGGIWVQAVV-LNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVA 236

[Transport and binding proteins, Cations and iron carrying compounds]. Length = 505

>gnl|CDD|234525 TIGR04259, oxa_formateAnti, oxalate/formate antiporter

 Score = 40.9 bits (96), Expect = 0.001
 Identities = 31/140 (22%), Positives = 53/140 (37%), Gaps = 2/140 (1%)

Query: 139 PMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPL 198
           P+    GW  +   +  + F           GW    +G R V+  G ++  L   L   
Sbjct: 28  PIDATHGWGRAAIQVAFTLFVVTETWLVPIEGWFVDKYGPRIVVMFGGIMCGLGWVLNAY 87

Query: 199 LAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLL 258
            A  +P L  + V+ GIG G           +  P ++R  A      G   G+   ++ 
Sbjct: 88  -ADSLPALYAAAVVAGIGAGAVYGTCVGNALKWFP-DKRGLAAGLTAAGFGAGAALTVVP 145

Query: 259 APPIIENLGWESVFYIFGLL 278
              +I+  G+++ F  FGL 
Sbjct: 146 IAAMIKVSGYQAAFMYFGLG 165

This model represents a subgroup of the more broadly defined model TIGR00890, which in turn belongs to the Major Facilitator transporter family. Seed members for this family include the known oxalate/formate antiporter of Oxalobacter formigenes, as well as transporter subunits co-clustered with the two genes of a system that decarboxylates oxalate into formate. In many of these cassettes, two subunits are found rather than one, suggesting the antiporter is sometimes homodimeric, sometimes heterodimeric. Length = 405

>gnl|CDD|179614 PRK03633, PRK03633, putative MFS family transporter protein; Provisional

 Score = 40.4 bits (95), Expect = 0.001
 Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 1/66 (1%)

Query: 151 AGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSR 210
            G+V SS+F G  +  L  G++ K  G  +      LI++   A L L+ GF    +  R
Sbjct: 43  VGVVSSSYFTGNLVGTLLAGYVIKRIGFNRSYYLASLIFAAGCAGLGLMVGF-WSWLAWR 101

Query: 211 VLVGIG 216
            + GIG
Sbjct: 102 FVAGIG 107

Length = 381

>gnl|CDD|233172 TIGR00891, 2A0112, putative sialic acid transporter

 Score = 40.3 bits (94), Expect = 0.002
 Identities = 35/163 (21%), Positives = 78/163 (47%), Gaps = 17/163 (10%)

Query: 121 LAFVICNMDKVNLSVAIIPMSHRFGWNSS-VAGLVQSSFFWGYALSQLPGGWLAKIFGGR 179
           L +++   D   +++ +  ++  FG  +   A L+ ++    +  + + G W  +   GR
Sbjct: 19  LGWLLDAFDFFLVALVLAEVAGEFGLTTVDAASLISAALISRWFGALMFGLWGDRY--GR 76

Query: 180 KV-LQTGVLIWSLATALLPLLAGFMPG---LVLSRVLVGIGEGVSPSAATDLIARSIPLE 235
           ++ + T ++++S  T    L  GF PG   + ++R+++GIG G    ++   +  S P  
Sbjct: 77  RLPMVTSIVLFSAGT----LACGFAPGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKH 132

Query: 236 ERSRAVSFVFGGLSFG----SVAGLLLAPPIIENLGWESVFYI 274
            R++A   +  G + G    +    L+ P  +   GW ++F+I
Sbjct: 133 LRNKASGLLISGYAVGAVVAAQVYSLVVP--VWGDGWRALFFI 173

[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 405

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	423
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	100.0
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	100.0
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	100.0
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	99.98
PRK14995	495	methyl viologen resistance protein SmvA; Provision	99.98
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	99.97
TIGR00893	399	2A0114 d-galactonate transporter.	99.97
PRK03545	390	putative arabinose transporter; Provisional	99.97
PRK11663	434	regulatory protein UhpC; Provisional	99.97
PLN00028	476	nitrate transmembrane transporter; Provisional	99.97
KOG2532	466	consensus Permease of the major facilitator superf	99.97
PRK10406	432	alpha-ketoglutarate transporter; Provisional	99.97
PRK10213	394	nepI ribonucleoside transporter; Reviewed	99.97
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	99.97
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	99.97
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	99.97
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.97
PRK03699	394	putative transporter; Provisional	99.97
TIGR00891	405	2A0112 putative sialic acid transporter.	99.97
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	99.97
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	99.96
PRK09705	393	cynX putative cyanate transporter; Provisional	99.96
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	99.96
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	99.96
PRK10091	382	MFS transport protein AraJ; Provisional	99.96
PRK10642	490	proline/glycine betaine transporter; Provisional	99.96
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	99.96
PRK15403	413	multidrug efflux system protein MdtM; Provisional	99.96
PRK12307	426	putative sialic acid transporter; Provisional	99.96
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	99.96
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	99.96
KOG2533	495	consensus Permease of the major facilitator superf	99.96
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.96
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.96
KOG1330	493	consensus Sugar transporter/spinster transmembrane	99.96
TIGR00805	633	oat sodium-independent organic anion transporter.	99.96
PRK15075	434	citrate-proton symporter; Provisional	99.96
TIGR00900	365	2A0121 H+ Antiporter protein.	99.96
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	99.96
PRK10133	438	L-fucose transporter; Provisional	99.96
PRK10504	471	putative transporter; Provisional	99.96
PRK10473	392	multidrug efflux system protein MdtL; Provisional	99.96
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	99.95
TIGR00897	402	2A0118 polyol permease family. This family of prot	99.95
PRK09952	438	shikimate transporter; Provisional	99.95
PRK11043	401	putative transporter; Provisional	99.95
PRK11652	394	emrD multidrug resistance protein D; Provisional	99.95
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.95
TIGR00895	398	2A0115 benzoate transport.	99.95
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	99.95
PRK10077	479	xylE D-xylose transporter XylE; Provisional	99.95
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	99.95
PRK03633	381	putative MFS family transporter protein; Provision	99.94
PRK11195	393	lysophospholipid transporter LplT; Provisional	99.94
PRK03893	496	putative sialic acid transporter; Provisional	99.94
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.94
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	99.94
TIGR00896	355	CynX cyanate transporter. This family of proteins	99.94
PRK05122	399	major facilitator superfamily transporter; Provisi	99.94
PRK12382	392	putative transporter; Provisional	99.93
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.93
PRK10489	417	enterobactin exporter EntS; Provisional	99.93
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.93
PRK09874	408	drug efflux system protein MdtG; Provisional	99.93
PRK11010	491	ampG muropeptide transporter; Validated	99.93
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	99.92
PRK11646	400	multidrug resistance protein MdtH; Provisional	99.92
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.92
PRK10054	395	putative transporter; Provisional	99.92
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	99.92
TIGR00898	505	2A0119 cation transport protein.	99.92
PRK15011	393	sugar efflux transporter B; Provisional	99.92
PRK11902	402	ampG muropeptide transporter; Reviewed	99.92
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	99.92
TIGR00901	356	2A0125 AmpG-related permease.	99.91
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	99.91
KOG3764	464	consensus Vesicular amine transporter [Intracellul	99.91
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	99.9
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	99.9
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	99.89
PRK10207	489	dipeptide/tripeptide permease B; Provisional	99.89
PRK09528	420	lacY galactoside permease; Reviewed	99.89
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	99.89
KOG0254	513	consensus Predicted transporter (major facilitator	99.88
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	99.88
KOG0569	485	consensus Permease of the major facilitator superf	99.88
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	99.87
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	99.87
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	99.87
KOG2615	451	consensus Permease of the major facilitator superf	99.85
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.84
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	99.83
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	99.83
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	99.83
PTZ00207	591	hypothetical protein; Provisional	99.82
PRK09584	500	tppB putative tripeptide transporter permease; Rev	99.81
PRK15462	493	dipeptide/tripeptide permease D; Provisional	99.8
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	99.8
KOG2563	480	consensus Permease of the major facilitator superf	99.78
KOG3626	735	consensus Organic anion transporter [Secondary met	99.77
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	99.76
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	99.76
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	99.76
TIGR00788	468	fbt folate/biopterin transporter. The only functio	99.73
PRK09669	444	putative symporter YagG; Provisional	99.73
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	99.73
PRK10429	473	melibiose:sodium symporter; Provisional	99.72
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	99.72
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	99.71
PF13347	428	MFS_2: MFS/sugar transport protein	99.71
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	99.68
PRK09848	448	glucuronide transporter; Provisional	99.65
KOG2325	488	consensus Predicted transporter/transmembrane prot	99.65
PRK10642	490	proline/glycine betaine transporter; Provisional	99.64
PRK11462	460	putative transporter; Provisional	99.64
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	99.64
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.63
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	99.62
PRK15011	393	sugar efflux transporter B; Provisional	99.61
PRK05122	399	major facilitator superfamily transporter; Provisi	99.61
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	99.61
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.6
PRK09528	420	lacY galactoside permease; Reviewed	99.59
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.59
COG2211	467	MelB Na+/melibiose symporter and related transport	99.57
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	99.57
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.57
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.56
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.56
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	99.56
PRK09874	408	drug efflux system protein MdtG; Provisional	99.56
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	99.55
PRK03545	390	putative arabinose transporter; Provisional	99.55
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.55
PRK12382	392	putative transporter; Provisional	99.55
PRK03699	394	putative transporter; Provisional	99.54
TIGR00893	399	2A0114 d-galactonate transporter.	99.53
PRK03633	381	putative MFS family transporter protein; Provision	99.53
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	99.51
PRK09705	393	cynX putative cyanate transporter; Provisional	99.51
PRK03893	496	putative sialic acid transporter; Provisional	99.51
PRK11010	491	ampG muropeptide transporter; Validated	99.5
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	99.5
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	99.5
TIGR00897	402	2A0118 polyol permease family. This family of prot	99.5
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.5
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.49
PRK11663	434	regulatory protein UhpC; Provisional	99.49
PRK10489	417	enterobactin exporter EntS; Provisional	99.49
TIGR00891	405	2A0112 putative sialic acid transporter.	99.48
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	99.47
PRK09952	438	shikimate transporter; Provisional	99.47
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	99.45
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	99.41
COG2270	438	Permeases of the major facilitator superfamily [Ge	99.4
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	99.4
PRK10504	471	putative transporter; Provisional	99.4
PRK12307	426	putative sialic acid transporter; Provisional	99.39
PRK10077	479	xylE D-xylose transporter XylE; Provisional	99.39
TIGR00900	365	2A0121 H+ Antiporter protein.	99.39
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	99.39
PRK15075	434	citrate-proton symporter; Provisional	99.38
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	99.38
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	99.38
KOG2816	463	consensus Predicted transporter ADD1 (major facili	99.37
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	99.37
PRK10406	432	alpha-ketoglutarate transporter; Provisional	99.35
TIGR00895	398	2A0115 benzoate transport.	99.34
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	99.34
PRK11902	402	ampG muropeptide transporter; Reviewed	99.34
PRK10054	395	putative transporter; Provisional	99.34
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	99.34
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	99.33
KOG0569	485	consensus Permease of the major facilitator superf	99.32
PRK10213	394	nepI ribonucleoside transporter; Reviewed	99.32
PRK10091	382	MFS transport protein AraJ; Provisional	99.32
COG2270	438	Permeases of the major facilitator superfamily [Ge	99.31
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	99.3
PLN00028	476	nitrate transmembrane transporter; Provisional	99.3
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	99.3
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	99.29
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	99.28
TIGR00898	505	2A0119 cation transport protein.	99.27
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	99.27
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	99.27
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	99.26
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	99.26
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	99.26
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	99.23
PRK11646	400	multidrug resistance protein MdtH; Provisional	99.23
TIGR00896	355	CynX cyanate transporter. This family of proteins	99.21
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	99.21
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	99.17
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	99.17
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	99.17
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	99.16
PRK10133	438	L-fucose transporter; Provisional	99.16
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	99.16
PF13347	428	MFS_2: MFS/sugar transport protein	99.15
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	99.14
PRK11195	393	lysophospholipid transporter LplT; Provisional	99.13
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	99.12
PRK14995	495	methyl viologen resistance protein SmvA; Provision	99.12
PRK10473	392	multidrug efflux system protein MdtL; Provisional	99.11
PRK09848	448	glucuronide transporter; Provisional	99.11
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	99.1
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	99.1
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	99.08
TIGR00901	356	2A0125 AmpG-related permease.	99.08
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	99.07
PRK10429	473	melibiose:sodium symporter; Provisional	99.06
KOG0637	498	consensus Sucrose transporter and related proteins	99.03
PRK09669	444	putative symporter YagG; Provisional	99.03
PRK11043	401	putative transporter; Provisional	99.03
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	98.98
KOG3762	618	consensus Predicted transporter [General function	98.97
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	98.95
COG0477	338	ProP Permeases of the major facilitator superfamil	98.93
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	98.93
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	98.86
TIGR00788	468	fbt folate/biopterin transporter. The only functio	98.86
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	98.85
KOG2532	466	consensus Permease of the major facilitator superf	98.85
KOG3764	464	consensus Vesicular amine transporter [Intracellul	98.85
PRK11652	394	emrD multidrug resistance protein D; Provisional	98.85
COG2211	467	MelB Na+/melibiose symporter and related transport	98.8
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	98.8
PRK11462	460	putative transporter; Provisional	98.77
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	98.77
KOG3098	461	consensus Uncharacterized conserved protein [Funct	98.77
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	98.76
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	98.72
PRK09584	500	tppB putative tripeptide transporter permease; Rev	98.72
PF05978	156	UNC-93: Ion channel regulatory protein UNC-93; Int	98.62
KOG3574	510	consensus Acetyl-CoA transporter [Inorganic ion tr	98.62
PRK10207	489	dipeptide/tripeptide permease B; Provisional	98.61
KOG0254	513	consensus Predicted transporter (major facilitator	98.57
PRK15403	413	multidrug efflux system protein MdtM; Provisional	98.56
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	98.55
PF03219	491	TLC: TLC ATP/ADP transporter; InterPro: IPR004667	98.46
PF12832	77	MFS_1_like: MFS_1 like family	98.45
KOG4332	454	consensus Predicted sugar transporter [Carbohydrat	98.44
PF06779	85	DUF1228: Protein of unknown function (DUF1228); In	98.43
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	98.43
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	98.36
PTZ00207	591	hypothetical protein; Provisional	98.28
KOG2533	495	consensus Permease of the major facilitator superf	98.23
COG3202	509	ATP/ADP translocase [Energy production and convers	98.22
KOG2615	451	consensus Permease of the major facilitator superf	98.16
PF12832	77	MFS_1_like: MFS_1 like family	98.11
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	98.07
PRK15462	493	dipeptide/tripeptide permease D; Provisional	98.06
KOG2816	463	consensus Predicted transporter ADD1 (major facili	98.01
PF00854	372	PTR2: POT family; InterPro: IPR000109 This entry r	97.98
PF13000	544	Acatn: Acetyl-coenzyme A transporter 1; InterPro:	97.97
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	97.83
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	97.62
KOG1237	571	consensus H+/oligopeptide symporter [Amino acid tr	97.58
KOG3810	433	consensus Micronutrient transporters (folate trans	97.58
PRK03612	521	spermidine synthase; Provisional	97.56
KOG3097	390	consensus Predicted membrane protein [Function unk	97.44
KOG2563	480	consensus Permease of the major facilitator superf	97.38
KOG2325	488	consensus Predicted transporter/transmembrane prot	97.12
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	97.06
KOG1330	493	consensus Sugar transporter/spinster transmembrane	96.96
KOG3098	461	consensus Uncharacterized conserved protein [Funct	96.86
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	96.83
TIGR00805	633	oat sodium-independent organic anion transporter.	96.82
KOG1479	406	consensus Nucleoside transporter [Nucleotide trans	96.8
TIGR00939	437	2a57 Equilibrative Nucleoside Transporter (ENT).	96.75
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	96.74
KOG3762	618	consensus Predicted transporter [General function	96.48
TIGR00939	437	2a57 Equilibrative Nucleoside Transporter (ENT).	96.22
KOG3880	409	consensus Predicted small molecule transporter inv	95.92
KOG3626	735	consensus Organic anion transporter [Secondary met	95.64
KOG4830	412	consensus Predicted sugar transporter [Carbohydrat	95.48
PF01733	309	Nucleoside_tran: Nucleoside transporter; InterPro:	95.16
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	94.48
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	94.38
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	94.11
PF13000	544	Acatn: Acetyl-coenzyme A transporter 1; InterPro:	94.05
PF07672	267	MFS_Mycoplasma: Mycoplasma MFS transporter; InterP	93.92
KOG4332	454	consensus Predicted sugar transporter [Carbohydrat	93.79
PF06779	85	DUF1228: Protein of unknown function (DUF1228); In	93.64
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	93.53
KOG3880	409	consensus Predicted small molecule transporter inv	92.05
PF07857	254	DUF1632: CEO family (DUF1632); InterPro: IPR012435	91.91
KOG0637	498	consensus Sucrose transporter and related proteins	91.64
KOG1479	406	consensus Nucleoside transporter [Nucleotide trans	91.27
PF03219	491	TLC: TLC ATP/ADP transporter; InterPro: IPR004667	91.24
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	90.51
PF06912	209	DUF1275: Protein of unknown function (DUF1275); In	86.35
COG4262	508	Predicted spermidine synthase with an N-terminal m	85.74
COG1230	296	CzcD Co/Zn/Cd efflux system component [Inorganic i	85.57
PF07672	267	MFS_Mycoplasma: Mycoplasma MFS transporter; InterP	84.43
KOG3574	510	consensus Acetyl-CoA transporter [Inorganic ion tr	83.97
KOG3810	433	consensus Micronutrient transporters (folate trans	81.14

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=100.00  E-value=2.8e-34  Score=256.78  Aligned_cols=288  Identities=18%  Similarity=0.223  Sum_probs=244.7

Q ss_pred             hhHHHHHHHHHHHHHHHhhhhhhhhhHHHhhhhhCCCcchhhHHHHHHHHHHHhhhhhhhhHhhHhcCchHHHHHHHHHH
Q 014481          111 QRYKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWS  190 (423)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~  190 (423)
                      .|++++..+++++...++.+..++.+.|.+.++.++|.+|.|++.+++.+.+.++..+.|.++||.++|..+.+++++.+
T Consensus        26 ~r~qif~~~fiGYa~fYl~RknF~~a~p~l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~fm~~gLilsa  105 (448)
T COG2271          26 WRIQIFLSIFIGYAAFYLTRKNFNLAMPALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFGLILSA  105 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHhhccHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCceeehHHHHHHH
Confidence            36778899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHhhcccchHhHHHHHHhcCCCCchhhHHHHHHhhhhhHHHHHHhhH--HHhhhccCc
Q 014481          191 LATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLA--PPIIENLGW  268 (423)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~--~~l~~~~gw  268 (423)
                      +..++++ ++++.+.+.++.++.|+.+|..+|++...+++|+++++||+..++++++.++|+.+.|++.  +++..+.+|
T Consensus       106 i~nil~G-fs~s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~la~~~~~~~w  184 (448)
T COG2271         106 IVNILFG-FSPSLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVALLAFFAFHGGW  184 (448)
T ss_pred             HHHHHHh-hhhHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccccCceEEEehhhhhcccchHHHHHHHHHHHhccch
Confidence            9998885 5668899999999999999999999999999999999999999999999999999999999  889888899


Q ss_pred             hHHHHHHHHHHHHHHHHHHhhccCCcCcCCCCCcchhhhhhhhhhhhhHHhhc--cccCCCcHHHhhhcHHHHHHHHHHH
Q 014481          269 ESVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMG--ESLKDVPWKAIFRSKAVWAMIYAHF  346 (423)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~  346 (423)
                      |..|++.++++++..+..++..+++|++..-...++-..+..+..  +.+++.  .+..+.-++.+++||.+|.++++.+
T Consensus       185 ~~~f~~pgiiaiival~~~~~~rd~Pqs~GLP~ie~~~~d~~e~~--~~~~~~~~ls~~~i~~~YVL~Nk~iW~la~a~v  262 (448)
T COG2271         185 RAAFYFPGIIAIIVALILLFLLRDRPQSEGLPPIEEYRGDPLEIY--EEEKENEGLTAWQIFVKYVLKNKLIWLLALANV  262 (448)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhCCCccccCCCCHHHhhcCchhhh--hhhccCCCccHHHHHHHHHHcChHHHHHHHHHH
Confidence            999999999998876666655554443322111111100000000  000000  1111223567889999999999999


Q ss_pred             HHHHHHHHHHhhhhHHHHHhhCCChhhHHHHHHHHHHHHHHHHHHHHHHhHHhhh
Q 014481          347 CGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIA  401 (423)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~  401 (423)
                      +...+-+++..|.|.|+.|..|++...+++..+.+-+++++|.+++||++||+-+
T Consensus       263 fvYivR~gi~dW~p~YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfk  317 (448)
T COG2271         263 FVYVVRYGINDWGPLYLSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFK  317 (448)
T ss_pred             HHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcc
Confidence            9999999999999999999999999999999999999999999999999999863

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=100.00  E-value=3.9e-31  Score=240.05  Aligned_cols=264  Identities=21%  Similarity=0.301  Sum_probs=236.4

Q ss_pred             HHHHHHHHHHHHHHHhhhhhhhhhHHHhhhhhCCCcchhhHHHHHHHHHHHhhhhhhhhHhhHhcCchHHHHHHHHHHHH
Q 014481          113 YKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLA  192 (423)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~  192 (423)
                      +..+..+.++.|............+|++.+|+|+|..+.|+..++|.++..++.++...+.||+.||++++..+.++.++
T Consensus        12 ~~~l~aLa~~~F~igttEfv~~gLLp~iA~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l~lFi~~   91 (394)
T COG2814          12 WLALLALALAAFAIGTTEFVPVGLLPPIAADLGVSEGAAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALFIVS   91 (394)
T ss_pred             hHHHHHHHHHHHHHHhHHHHHHhchHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHH
Confidence            46677788888888889999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhHHHHHHHHHHHHHhhcccchHhHHHHHHhcCCCCchhhHHHHHHhhhhhHHHHHHhhHHHhhhccCchHHH
Q 014481          193 TALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVF  272 (423)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw~~~~  272 (423)
                      .+++ ++++|++.++++|++.|+..|.+++...++..+..|+++|++++++...+..++.++|.+++.++.+.+|||++|
T Consensus        92 n~l~-alAp~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~GWR~~F  170 (394)
T COG2814          92 NLLS-ALAPSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQLFGWRATF  170 (394)
T ss_pred             HHHH-HHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHHHHhhHHHHH
Confidence            9887 788999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHH-HHhhccCCcCcCCCCCcchhhhhhhhhhhhhHHhhccccCCCcHHHhhhcHHHHHHHHHHHHHHHH
Q 014481          273 YIFGLLGIAWFSG-FKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWG  351 (423)
Q Consensus       273 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  351 (423)
                      +..+.++++.++. ...+|++..++..+...                        .+..+++|+|.++...+..++...+
T Consensus       171 ~~ia~l~ll~~~~~~~~lP~~~~~~~~~~~~------------------------~~~~~~l~~p~v~~~l~~t~l~~~g  226 (394)
T COG2814         171 LAIAVLALLALLLLWKLLPPSEISGSLPGPL------------------------RTLLRLLRRPGVLLGLLATFLFMTG  226 (394)
T ss_pred             HHHHHHHHHHHHHHHHhCCCccCCCCCCcch------------------------hHHHHHhcCchHHHHHHHHHHHHcc
Confidence            9999999877554 44555111111110000                        0135789999999999999999999


Q ss_pred             HHHHHhhhhHHHHHhhCCChhhHHHHHHHHHHHHHHHHHHHHHHhHHhhhc
Q 014481          352 HYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIAT  402 (423)
Q Consensus       352 ~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~r  402 (423)
                      ++..++|+..++++..|++....+++...+++++++|..++|++.|| +.|
T Consensus       227 ~F~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~  276 (394)
T COG2814         227 HFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR-GPR  276 (394)
T ss_pred             hhhhHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc-cch
Confidence            99999999999999999999999999999999999999999999999 544

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=100.00  E-value=7e-31  Score=250.07  Aligned_cols=290  Identities=19%  Similarity=0.289  Sum_probs=230.8

Q ss_pred             hhHHHHHHHHHHHHHHHhhhhhhhhhHHHhhhhhCCCcchhhHHHHHHHHHHHhhhhhhhhHhhHhcCchHHHHHHHHHH
Q 014481          111 QRYKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWS  190 (423)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~  190 (423)
                      .+|+.+..+++++++++++....+...|.+.+++|++..++|++.+++.+++.+++++.|++.||+|||+++.++.++++
T Consensus         5 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~   84 (412)
T TIGR02332         5 LFRRLIIFLFILFIFSFLDRINIGFAGLTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAIIGARRWIAGIMVLWG   84 (412)
T ss_pred             ehhHHHHHHHHHHHHHHhhhhhHHHHHHhhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHHHHHH
Confidence            35788888899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHhhcccchHhHHHHHHhcCCCCchhhHHHHHHhhhhhHHHHHHhhHHHhhh------
Q 014481          191 LATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIE------  264 (423)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~------  264 (423)
                      ++.+++ .++++++.+++.|++.|++.+...+....++.|++|+++|++++++++.+..+|.++++++++++.+      
T Consensus        85 ~~~~~~-~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~  163 (412)
T TIGR02332        85 IASTAT-MFATGPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILALDGLMA  163 (412)
T ss_pred             HHHHHH-HHhcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence            998887 4677889999999999999999999999999999999999999999999999999999999998864      


Q ss_pred             ccCchHHHHHHHHHHHHHHH-HHHhhccCCcCcCCCCCcchhhhhhhhhhh-h--hHHhhcc--ccC----CCcHHHhhh
Q 014481          265 NLGWESVFYIFGLLGIAWFS-GFKILQEGETSNGATLAPRSNYINMKKSLS-A--SLEEMGE--SLK----DVPWKAIFR  334 (423)
Q Consensus       265 ~~gw~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~--~~~----~~~~~~~~~  334 (423)
                      ..|||+.|++.+++.++..+ ..++++|++.... ...+++++. ..+..+ .  ..++..+  ...    ...+++++ 
T Consensus       164 ~~gwr~~f~~~~~~~l~~~~~~~~~~~~~p~~~~-~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  240 (412)
T TIGR02332       164 LKGWQWLFLLEGFPSVILGVMTWFWLDDSPDKAK-WLDEEDKKA-LKEMIDNDQLTLEQPEGAFAHAAMPQRSMLREIF-  240 (412)
T ss_pred             ccchhHHHHHHHHHHHHHHHHHhhccCCCcccCC-CCCHHHHHH-HHHHHHhccccccccccccccccccHHHHHHHhc-
Confidence            36999999998888766544 4445555543211 111111100 000000 0  0000000  000    11233433 


Q ss_pred             cHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHh-hCCChhhHHHHHHHHHHHHHHHHHHHHHHhHHhhhcCC
Q 014481          335 SKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEE-LSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGV  404 (423)
Q Consensus       335 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~r~~  404 (423)
                      ++.+|...+..++.....+.+.+|+|.|+++. .|++..+++.+.....++.+++.++.|+++||+++|+.
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr~~~r~~  311 (412)
T TIGR02332       241 TPAIMLYTLAYFCLTNTLSAINIWTPQILQSFNQGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDRLKERKH  311 (412)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHhHHHhhHHHHHHHHHHHHHHHHhcccCccHH
Confidence            58888888888888888999999999999873 46788889999999999999999999999999987643

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=99.98  E-value=8.4e-32  Score=260.86  Aligned_cols=291  Identities=11%  Similarity=0.074  Sum_probs=228.9

Q ss_pred             hHHHHHHHHHHHHHHHhhhhhhhhhHHHhhhhhCCCcchhhHHHHHHHHHHHhhhhhhhhHhhHhcCchHHHHHHHHHHH
Q 014481          112 RYKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSL  191 (423)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~  191 (423)
                      .+..+..+++++++.++++..++...|.+.+++|++..+.|++.+++.+++.+++++.|+++||+|+|+++.++.+++++
T Consensus        27 ~~~i~~~~~~~~~~~y~~r~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~~  106 (467)
T PRK09556         27 FMQSYLVVFIGYLTMYLIRKNFKAAQNDMISTYGLSTTELGMIGLGFSITYGVGKTLVGYYADGKNTKQFLPFLLILSAI  106 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHhcChhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhccCccchHHHHHHHHHH
Confidence            45567788888888999999999999999999999999999999999999999999999999999999999998888877


Q ss_pred             HHHHHHHh----hhHHHHHHHHHHHHHhhcccchHhHHHHHHhcCCCCchhhHHHHHHhhhhhHHHHHHhhHHHhhhcc-
Q 014481          192 ATALLPLL----AGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENL-  266 (423)
Q Consensus       192 ~~~~~~~~----~~~~~~~~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~-  266 (423)
                      ..++.+..    +++++.++++|++.|++.+...+...+++++++|+++||+++|++..+.++|.+++++++.++.+.. 
T Consensus       107 ~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~~l~~~i~~~~~~~~~  186 (467)
T PRK09556        107 CMLGFGASLGSGSVSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRKRGRFLGFWNISHNLGGAGAGGVALWGANYFF  186 (467)
T ss_pred             HHHHHHHHHhcccchHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccceeeeEEeeecccchhhhHHHHHHHHHHHhhc
Confidence            77655432    5778999999999999999999999999999999999999999999999999999999988776643 


Q ss_pred             --CchHHHHHHHHHHHHHHHHHHhhccCCcCcCCCCCcchhhhhhhhhhhhhHHhhccccCCCc--HHHhhhcHHHHHHH
Q 014481          267 --GWESVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVP--WKAIFRSKAVWAMI  342 (423)
Q Consensus       267 --gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~  342 (423)
                        +|+..|.+.+++.++..+..+++.++.+++......++ ... +...........++.....  .+..+++|.+|...
T Consensus       187 ~~~~~~~f~~~g~~~~~~~i~~~~~~~~~p~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  264 (467)
T PRK09556        187 DGHVIGMFIFPSIIALIIGFIGLRYGSDSPEELGWGKAEE-IFG-EPISEEDKETESTDMTKWQIFVEYVLKNPVIWLLC  264 (467)
T ss_pred             cCcchhHHHHHHHHHHHHHHHHHHhCCCChhhcCCCChhh-ccc-CccchhhhccccccCcHHHHHHHHHHcChHHHHHH
Confidence              69999988888877665544444332222111111100 000 0000000000000000001  12378999999999


Q ss_pred             HHHHHHHHHHHHHHhhhhHHHHHhhCCChhhHHHHHHHHHHHHHHHHHHHHHHhHHhhhcCC
Q 014481          343 YAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGV  404 (423)
Q Consensus       343 l~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~r~~  404 (423)
                      +..++......+...|+|.|+++.+|++..++++......++.+++.+++|+++||+++|+.
T Consensus       265 ~~~~~~~~~~~~~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~  326 (467)
T PRK09556        265 FANIFLYIVRIGIDNWSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLANGRRA  326 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCch
Confidence            99888888888889999999998899999999999999999999999999999999998854

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=99.98  E-value=7e-30  Score=248.87  Aligned_cols=291  Identities=17%  Similarity=0.130  Sum_probs=235.1

Q ss_pred             hhHHHHHHHHHHHHHHHhhhhhhhhhHHHhhhhhCCCcchhhHHHHHHHHHHHhhhhhhhhHhhHhcCchHHHHHHHHHH
Q 014481          111 QRYKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWS  190 (423)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~  190 (423)
                      ++|..+..++++.++..++.++++..+|.+.+++|.+..+.+|+.+.+.++..++.+++|+++||+|||++++++.++.+
T Consensus         3 ~~~~~~~~~~~~~~~~~ld~tiv~~a~p~i~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~~~~~~   82 (495)
T PRK14995          3 RQWLTLVIIVLVYIPVAIDATVLHVAAPTLSMTLGASGNELLWIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGGTLFG   82 (495)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence            46788889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHhhcccchHhHHHHHHhcC-CCCchhhHHHHHHhhhhhHHHHHHhhHHHhhhccCch
Q 014481          191 LATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSI-PLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWE  269 (423)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw~  269 (423)
                      ++.+++ ..+++++.++++|+++|+|.+...+.....+.+++ |+++|++++|++.....+|..+||.+++++.++.|||
T Consensus        83 ~~~~~~-~~a~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~~gwr  161 (495)
T PRK14995         83 LASLAA-AFSPTASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILLEHFYWG  161 (495)
T ss_pred             HHHHHH-HHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChH
Confidence            999887 56788899999999999999998888888887776 6789999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHH-HHhhccCCcCcCCCCCcchhhhh-----------hhh---hh-hh-----------------h
Q 014481          270 SVFYIFGLLGIAWFSG-FKILQEGETSNGATLAPRSNYIN-----------MKK---SL-SA-----------------S  316 (423)
Q Consensus       270 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-----------~~~---~~-~~-----------------~  316 (423)
                      |.|++...+.++.+++ .+++|++++++ .++.+......           ...   .. ..                 .
T Consensus       162 ~~f~i~~~~~~~~~~l~~~~l~~~~~~~-~~~~d~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~f~  240 (495)
T PRK14995        162 SVFLINVPIVLVVMGLTARYVPRQAGRR-DQPLNLGHALMLIVAILLLVYSAKTALKGFLSLWVTSLTLLTGALLLGLFI  240 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCCCCCC-CCCCChHhHHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHH
Confidence            9999988777665443 34445433221 11111100000           000   00 00                 0


Q ss_pred             HHhhccccCCCcHHHhhhcHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhhCCChhhHHHHHHHHHHHHHHHHHHHHHHh
Q 014481          317 LEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFA  396 (423)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~  396 (423)
                      ..+.+...+..+ .+++++|.++...+..++.....++...++|.|+++.+|+++.++++...+..++..++.++.|++.
T Consensus       241 ~~e~~~~~p~~~-~~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lq~v~g~s~~~ag~~~~~~~~~~~~~~~~~g~l~  319 (495)
T PRK14995        241 RTQLAASRPMID-MRLFTHRIILSGVVMAMTAMITLVGFELLMAQELQFVHGLSPLEAGMFMLPVMVASGFSGPIAGILV  319 (495)
T ss_pred             HHHhcCCCCCcC-HHHhCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            011111111222 4678999988888888888888888888999999998999999999999999999999999999999


Q ss_pred             HHhhhcCC
Q 014481          397 DNLIATGV  404 (423)
Q Consensus       397 dr~~~r~~  404 (423)
                      ||+++|+.
T Consensus       320 ~r~g~~~~  327 (495)
T PRK14995        320 SRLGLRLV  327 (495)
T ss_pred             HHcCchHH
Confidence            99997643

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=99.97  E-value=3.3e-30  Score=249.98  Aligned_cols=293  Identities=27%  Similarity=0.437  Sum_probs=239.9

Q ss_pred             CchhHHHHHHHHHHHHHHHhhhhhhhhhHHHhhh----------------------hhCCCcchhhHHHHHHHHHHHhhh
Q 014481          109 IPQRYKLIGTTSLAFVICNMDKVNLSVAIIPMSH----------------------RFGWNSSVAGLVQSSFFWGYALSQ  166 (423)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~s~~~~~~~~~~~~~~~~~~~  166 (423)
                      .+.|+.+...++++..+++.++...+...+.+.+                      +++++..+.|++.+.+.+++.+++
T Consensus        14 ~~~r~~i~~~~~~~~~~~y~dr~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~   93 (465)
T TIGR00894        14 CSFRLFLSFLLHICNVIIIAQRICLSLTMVAMVNKENSTDLACLSAENELDNIKNPNFKWSGALQGLILSSHFYGQIIIQ   93 (465)
T ss_pred             cCcHHHHHHHHHHHHHHHHHHHhhheEEEEEcccCCCCCCccccccccccccccCCCCCCCHHHhhHHHHHHHHHHHHHH
Confidence            3446788888888888899999999988887766                      789999999999999999999999


Q ss_pred             hhhhhHhhHhcCchHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHhhcccchHhHHHHHHhcCCCCchhhHHHHHH
Q 014481          167 LPGGWLAKIFGGRKVLQTGVLIWSLATALLPLL-AGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVF  245 (423)
Q Consensus       167 ~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~  245 (423)
                      ++.|+++||+|+|+++.++.++++++.+++... ..+++.+++.|+++|++.+...+....++.+++|+++|++++++..
T Consensus        94 ~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~  173 (465)
T TIGR00894        94 IPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGGGIALVVFCRVIQGLAQGSVSPATHKIIVKWAPPKERSRLLGMST  173 (465)
T ss_pred             cchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHhcccchhhHHHHHHhcCCHHHHHHHHHHHH
Confidence            999999999999999999999888887665322 3456789999999999999999999999999999999999999999


Q ss_pred             hhhhhHHHHHHhhHHHhhhc-cCchHHHHHHHHHHHHHHHHHHhhccCCcCcCCCCCcchhhhhhhhhhhhhHHhhcccc
Q 014481          246 GGLSFGSVAGLLLAPPIIEN-LGWESVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESL  324 (423)
Q Consensus       246 ~~~~~g~~~g~~~~~~l~~~-~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (423)
                      .+..+|.++++++++.+.+. .|||+.|++.+++.++..+..+.++++.++......++++. ...+..   .++..+..
T Consensus       174 ~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~-~i~~~~---~~~~~~~~  249 (465)
T TIGR00894       174 SGFQLGTFIFLPISGWLCESWGGWPMIFYVFGIVGCAWSLLWFVFPADDPSIHPCISKFEKK-YINSSL---QGQKGSTR  249 (465)
T ss_pred             HHHHHHHHHHHHHHHHHHhccCCCCeehhhhhHHHHHHHHHHHHHhcCCcccCCCCCHHHHH-HHHhhc---ccccCCCC
Confidence            99999999999999999988 49999999999988777666655554433222111111110 000000   00011112


Q ss_pred             CCCcHHHhhhcHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhhCCChhhHHHHHHHHHHHHHHHHHHHHHHhHHhhhcCC
Q 014481          325 KDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGV  404 (423)
Q Consensus       325 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~r~~  404 (423)
                      ...+++++++++.+|...+..++.....+.+.+|+|.|+++.+|++..+++++.++..++.+++.++.|+++||+++|+.
T Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d~~~~~~~  329 (465)
T TIGR00894       250 QSLPIKAIPKSLPVWAIWFAIFGHFWLYTILPTYLPTFISWVLRVSGKENGLLSSLPYLFAWLCSIFAGYLADFLKSSKT  329 (465)
T ss_pred             CCCCHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            23468999999999999999999999999999999999999899999999999999999999999999999999987755


Q ss_pred             c
Q 014481          405 E  405 (423)
Q Consensus       405 ~  405 (423)
                      .
T Consensus       330 ~  330 (465)
T TIGR00894       330 L  330 (465)
T ss_pred             C
Confidence            3

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.97  E-value=2.2e-30  Score=245.83  Aligned_cols=279  Identities=29%  Similarity=0.493  Sum_probs=227.6

Q ss_pred             HHHHHhhhhhhhhhHHHhhhhhCCCcchhhHHHHHHHHHHHhhhhhhhhHhhHhcCchHHHHHHHHHHHHHHHHHHhhhH
Q 014481          123 FVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGF  202 (423)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~  202 (423)
                      +++.+++...++...|.+.+++|.+..+.+++.+++.++..++.++.|+++||+|||+++.++.++.+++..++ ...++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~-~~~~~   81 (399)
T TIGR00893         3 TVINYLDRANLSFAAPMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQ-AFAGA   81 (399)
T ss_pred             ehHHHHHHHhhhHhHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHH-HHHcC
Confidence            44667788888899999999999999999999999999999999999999999999999999999988888777 45667


Q ss_pred             HHHHHHHHHHHHhhcccchHhHHHHHHhcCCCCchhhHHHHHHhhhhhHHHHHHhhHHHhhhccCchHHHHHHHHHHHHH
Q 014481          203 MPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAW  282 (423)
Q Consensus       203 ~~~~~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw~~~~~~~~~~~~~~  282 (423)
                      ++.++++|++.|++.+...+....++.|++|+++|++++++.+....+|.++++.+++.+.+..+||+.|++.+++.++.
T Consensus        82 ~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  161 (399)
T TIGR00893        82 YVSLYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIHFSWQWAFIIEGVLGIIW  161 (399)
T ss_pred             HHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHH
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999988887766


Q ss_pred             HHHHHhh-ccCCcCcCCCCCcchhhhhhhhhhhhhHHhhccccCCCcHHHhhhcHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 014481          283 FSGFKIL-QEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLSWLPT  361 (423)
Q Consensus       283 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  361 (423)
                      .+..++. +++++++ ....++++.........+...+..+......+++.+++|.++...+..++..........++|.
T Consensus       162 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (399)
T TIGR00893       162 GVLWLKFIPDPPQKA-KWLTEEEKYIVVGGLLAEQQGKGPSTPKKYQIKELLKDRRVWGLALGQFLVNIGLGFFLTWFPT  240 (399)
T ss_pred             HHHhhheecCCCCcc-ccCCHHHHhhcchhhccccccccccCCCccchHHHhcCHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence            5554443 3333221 1111111110000000000011111223345678899999999999999999999999999999


Q ss_pred             HHHHhhCCChhhHHHHHHHHHHHHHHHHHHHHHHhHHhhhcC
Q 014481          362 YFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATG  403 (423)
Q Consensus       362 ~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~r~  403 (423)
                      |+++.+|.++.+++++.....++++++.++.|++.||+++|+
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  282 (399)
T TIGR00893       241 YLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRG  282 (399)
T ss_pred             HHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            999888999999999999999999999999999999999886

>PRK03545 putative arabinose transporter; Provisional

Probab=99.97  E-value=1.1e-29  Score=240.69  Aligned_cols=264  Identities=19%  Similarity=0.229  Sum_probs=217.2

Q ss_pred             hHHHHHHHHHHHHHHHhhhhhhhhhHHHhhhhhCCCcchhhHHHHHHHHHHHhhhhhhhhHhhHhcCchHHHHHHHHHHH
Q 014481          112 RYKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSL  191 (423)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~  191 (423)
                      +|..+..+.++.+..........+.+|.+.+++|.++.++|++.+.+.+++.+++++.|++.||+|||+++..+.++.++
T Consensus         7 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~   86 (390)
T PRK03545          7 AWLRVVTLALAAFIFNTTEFVPVGLLSDIAQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLFVLFIA   86 (390)
T ss_pred             chHHHHHHHHHHHHHHhHHHHHHcchHHHHhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence            44444555555444444444566678999999999999999999999999999999999999999999999999999998


Q ss_pred             HHHHHHHhhhHHHHHHHHHHHHHhhcccchHhHHHHHHhcCCCCchhhHHHHHHhhhhhHHHHHHhhHHHhhhccCchHH
Q 014481          192 ATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESV  271 (423)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw~~~  271 (423)
                      +.+++ ...++++.++++|+++|++.+...+...+++.+++|+++|++++|++..+.++|..+||++++.+.+..|||+.
T Consensus        87 ~~~~~-~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~gw~~~  165 (390)
T PRK03545         87 SHVLS-ALAWNFTVLLISRIGIAFAHAIFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQYLGWRTT  165 (390)
T ss_pred             HHHHH-HHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhcHHHH
Confidence            88777 56788899999999999999888899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHh-hccCCcCcCCCCCcchhhhhhhhhhhhhHHhhccccCCCcHHHhhhcHHHHHHHHHHHHHHH
Q 014481          272 FYIFGLLGIAWFSGFKI-LQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSW  350 (423)
Q Consensus       272 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  350 (423)
                      |++.+++.++..+..+. +|++++++     + ..                    ..++++++++|.++...+..++...
T Consensus       166 f~~~~~~~~l~~~~~~~~~~~~~~~~-----~-~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~  219 (390)
T PRK03545        166 FLAIGGGALITLLLLIKLLPLLPSEH-----S-GS--------------------LKSLPLLFRRPALVSLYLLTVVVVT  219 (390)
T ss_pred             HHHHHHHHHHHHHHHHHhCCCCCCCC-----c-ch--------------------HHHHHHHHhCcHHHHHHHHHHHHHH
Confidence            99998887666444333 33322110     0 00                    0014578899988877666666666


Q ss_pred             HHHHHHhhhhHHHHHhhCCChhhHHHHHHHHHHHHHHHHHHHHHHhHHhhhc
Q 014481          351 GHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIAT  402 (423)
Q Consensus       351 ~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~r  402 (423)
                      ..+....+++.|+++.+|++..+++.+.....+++++++++.|++.||+++|
T Consensus       220 ~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~  271 (390)
T PRK03545        220 AHFTAYSYIEPFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRHPSG  271 (390)
T ss_pred             HHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhccchh
Confidence            6666677888888887899999999999999999999999999999999866

>PRK11663 regulatory protein UhpC; Provisional

Probab=99.97  E-value=1.4e-29  Score=242.96  Aligned_cols=286  Identities=17%  Similarity=0.185  Sum_probs=226.3

Q ss_pred             hHHHHHHHHHHHHHHHhhhhhhhhhHHHhhhhhCCCcchhhHHHHHHHHHHHhhhhhhhhHhhHhcCchHHHHHHHHHHH
Q 014481          112 RYKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSL  191 (423)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~  191 (423)
                      ++..+...++.++..+++...++..+|.+.+++|++..+.|++.+.+.+++.+++++.|+++||+|||+++.++.++.++
T Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~~~  100 (434)
T PRK11663         21 RRHILITMYLGYALFYFTRKSFNAAMPEMLADLGLSRSDIGLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIATGI  100 (434)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhHHHhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHHHHH
Confidence            44566667777888888888889999999999999999999999999999999999999999999999999999999998


Q ss_pred             HHHHHHHhhhHHHHHHHHHHHHHhhcccchHhHHHHHHhcCCCCchhhHHHHHHhhhhhHHHHHHhhHHHhhhccCchHH
Q 014481          192 ATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESV  271 (423)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw~~~  271 (423)
                      +.+++ ...++++.+++.|++.|++.+...+...+++.+++|+++|++++++++.+..+|..++|.+++++.+.+|||+.
T Consensus       101 ~~~~~-~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~  179 (434)
T PRK11663        101 INILF-GFSSSLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIALHYGWRYG  179 (434)
T ss_pred             HHHHH-HHHhHHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHH
Confidence            88776 45677888999999999999988999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHH-HHHHhhccCCcCcCCCCCcchhhhhhhhhhhhhHHhhccccCCCc-H-HHhhhcHHHHHHHHHHHHH
Q 014481          272 FYIFGLLGIAWF-SGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVP-W-KAIFRSKAVWAMIYAHFCG  348 (423)
Q Consensus       272 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~l~~~~~  348 (423)
                      |++.+++.++.. +..+++++++.........+.+... .+..   .+...+..+... + ...++++.+|.+.+..++.
T Consensus       180 f~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~-~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (434)
T PRK11663        180 MMIAGIIAIVVGLFLCWRLRDKPQAMGLPSVGEWRHDA-LELA---QQQEGAGLSRKEILTKYVLLNPYIWLLSFSYVLV  255 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHcCCCHhhcCCCCcccccccc-cccc---hhccccCCChhhhHHHHHhcChHHHHHHHHHHHH
Confidence            999888766543 3344555543321111000000000 0000   000000000001 1 2366789999888888887


Q ss_pred             HHHHHHHHhhhhHHHHHhhCCChhhHHHHHHHHHHHHHHHHHHHHHHhHHhhhc
Q 014481          349 SWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIAT  402 (423)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~r  402 (423)
                      ...+..+..|+|.|+.+.+|++..+++...+...+++++++++.|++.||+.++
T Consensus       256 ~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~~~~  309 (434)
T PRK11663        256 YVVRAAINDWGNLYMSETLGVDLVTANSAVSMFELGGFIGALVAGWGSDKLFNG  309 (434)
T ss_pred             HHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHhccC
Confidence            778888889999999877899999999999999999999999999999999533

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=99.97  E-value=7.6e-29  Score=240.13  Aligned_cols=277  Identities=14%  Similarity=0.121  Sum_probs=214.2

Q ss_pred             hHHHHHHHHHHHHHHHhhhhhhhhhHHHhhhhhCCCcchhhHHHHHHHHHHHhhhhhhhhHhhHhcCchHHHHHHHHHHH
Q 014481          112 RYKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSL  191 (423)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~  191 (423)
                      +++.+....+..+..........+..|.+.+++|++..+.+++.+.+.+++.+++++.|+++||+|||+++.++.+++++
T Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~  113 (476)
T PLN00028         34 HMRAFHLSWISFFTCFVSTFAAAPLLPIIRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTAP  113 (476)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHH
Confidence            34455555566666667777788889999999999999999999999999999999999999999999999999988888


Q ss_pred             HHHHHHHhhhHHHHHHHHHHHHHhhcccchHhHHHHHHhcCCCCchhhHHHHHHhhhhhHHHHHHhhHHHhhh-------
Q 014481          192 ATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIE-------  264 (423)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~-------  264 (423)
                      +.++. ...++++.++++|++.|++.+.. .....++++++|+++|++++|+.....++|..+++.+.+.+..       
T Consensus       114 ~~~~~-~~~~s~~~l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~  191 (476)
T PLN00028        114 AVFCM-SLVSSATGFIAVRFFIGFSLATF-VSCQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGA  191 (476)
T ss_pred             HHHHH-HHhcCHHHHHHHHHHHHHHHHhh-HHHHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            87766 45667788889999999998765 3456788999999999999999988777787777666654432       


Q ss_pred             --ccCchHHHHHHHHHHHHHHHHHHhhccCCcCcCCCCCcchhhhhhhhhhhhhHHhhccccCCCcHHHhhhcHHHHHHH
Q 014481          265 --NLGWESVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMI  342 (423)
Q Consensus       265 --~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  342 (423)
                        ..|||+.|++.+++.++..+..++++++.+....+  +.++.    .       +..+......+++.++++.+|.+.
T Consensus       192 ~~~~gWr~~f~i~g~l~l~~~l~~~~~~~~~p~~~~~--~~~~~----~-------~~~~~~~~~~~~~~~~~~~~~~~~  258 (476)
T PLN00028        192 PSFTAWRIAFFVPGLLHIIMGILVLTLGQDLPDGNYR--ELKKS----G-------TMPKDSFSKVLRYGVTNYRTWILA  258 (476)
T ss_pred             cchhhhHHHHHHHHHHHHHHHHHHHHHcCcCCCCchh--hHHhc----C-------ccccccHHHHHHHHHcCchhHHHH
Confidence              24899999999998877766666665543321100  00000    0       000000011246678889988888


Q ss_pred             HHHHHHHHHHHHHHhhhhHHHHHhhCCChhhHHHHHHHHHHHHHHHHHHHHHHhHHhhhcC
Q 014481          343 YAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATG  403 (423)
Q Consensus       343 l~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~r~  403 (423)
                      +..++.......+..++|.|+.+.+|++..+++.+.++.+++++++++++|+++||+++|+
T Consensus       259 ~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~~~r~  319 (476)
T PLN00028        259 LTYGYSFGVELTMDNIIAEYFYDRFGLSLETAGAIAASFGLMNLFARPAGGYLSDVAARRF  319 (476)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhc
Confidence            7777766666777889999998888999999999999999999999999999999999874

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.97  E-value=5e-29  Score=235.96  Aligned_cols=273  Identities=35%  Similarity=0.617  Sum_probs=232.9

Q ss_pred             hhhCCCcchhhHHHHHHHHHHHhhhhhhhhHhhHhcCchHHHHHHHHHHHHHHHHHHhhh-HHHHHHHHHHHHHhhcccc
Q 014481          142 HRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAG-FMPGLVLSRVLVGIGEGVS  220 (423)
Q Consensus       142 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~G~~~~~~  220 (423)
                      .++++++.+-+++.+.+..|+.+++++.|+++||+|.|+++.++.++.++++++.....+ +++.++++|+++|++.|..
T Consensus        66 ~~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~~~~~~~~~R~lqGl~~g~~  145 (466)
T KOG2532|consen   66 GEYDWSSTEKGLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASIGFYLLLVLRFLQGLGQGVL  145 (466)
T ss_pred             ceecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHhHHHHhHH
Confidence            468889999999999999999999999999999999999999999999999988876553 3457899999999999999


Q ss_pred             hHhHHHHHHhcCCCCchhhHHHHHHhhhhhHHHHHHhhHHHhhhc-cCchHHHHHHHHHHHHHHHHHHhhccCCcCcCCC
Q 014481          221 PSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIEN-LGWESVFYIFGLLGIAWFSGFKILQEGETSNGAT  299 (423)
Q Consensus       221 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~-~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (423)
                      +|+...+.+.|.|++||++..++...+..+|.+++-+++|.+.+. .||+++|++.++++++..++++++..+.+.+.+.
T Consensus       146 ~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~~~~d~P~~h~~  225 (466)
T KOG2532|consen  146 FPAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFILWFLFYSDSPSKHPN  225 (466)
T ss_pred             HhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHhcCCcccCCC
Confidence            999999999999999999999999999999999999999999998 9999999999999999888877776655554443


Q ss_pred             CCcchhhhhhhhhhhhhHHhhccccCCCcHHHhhhcHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhhCCChhhHHHHHH
Q 014481          300 LAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSI  379 (423)
Q Consensus       300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~  379 (423)
                      ..++|.+...+.    ..++..+.....||+++++++.+|...+..++..++.+.+..+.|.|+.+.+|++..+.|++.+
T Consensus       226 is~~El~~I~~~----k~~~~~~~~~~vP~~~i~ts~~vwai~~~~f~~~~~~~~l~~y~PtY~~~VL~f~v~~~G~~sa  301 (466)
T KOG2532|consen  226 ISEKELKYIEKG----KSEAHVKKKPPVPYKAILTSPPVWAIWISAFGGNWGFYLLLTYLPTYLKEVLGFDVRETGFLSA  301 (466)
T ss_pred             CCHHHHHHHHhc----ccccccCCCCCCCHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCChhhhhHHHH
Confidence            333322111111    0111111225789999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhHHhhhcCCccceeeheeeehhh
Q 014481          380 LPPLASVLVTSIAAQFADNLIATGVETTMVRKEAVHSCV  418 (423)
Q Consensus       380 ~~~~~~~~~~~~~g~l~dr~~~r~~~~~~~~~~~~~~~~  418 (423)
                      +..+...+..+++|.++||+.+|....+..++++..++.
T Consensus       302 lP~l~~~~~k~~~g~lsD~l~~~~ls~t~~rkifn~i~~  340 (466)
T KOG2532|consen  302 LPFLAMAIVKFVAGQLSDRLTFRILSETTVRKIFNTIAF  340 (466)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhccCchHhHHHHHHhHHH
Confidence            999999999999999999998875666666666655543

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=99.97  E-value=1.7e-28  Score=235.48  Aligned_cols=269  Identities=15%  Similarity=0.181  Sum_probs=208.1

Q ss_pred             hHHHHHHHHHHHHHHHhhhhhhhhhHHHhhhhhC---CCcchhhHHH---HHHHHHHHhhhhhhhhHhhHhcCchHHHHH
Q 014481          112 RYKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFG---WNSSVAGLVQ---SSFFWGYALSQLPGGWLAKIFGGRKVLQTG  185 (423)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~s~~~~~~~~---~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~  185 (423)
                      ++..+...+++.++.+++...++...|.+.++++   .+..+.+...   +...++..++++++|+++||+|||+++.++
T Consensus        20 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~Grr~~l~~~   99 (432)
T PRK10406         20 RIWAIVGASSGNLVEWFDFYVYSFCSLYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADKHGRKKSMLIS   99 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence            4455666778888999999999999999999985   4555444444   444555559999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhhHH--------HHHHHHHHHHHhhcccchHhHHHHHHhcCCCCchhhHHHHHHhhhhhHHHHHHh
Q 014481          186 VLIWSLATALLPLLAGFM--------PGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLL  257 (423)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~--------~~~~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~  257 (423)
                      .++++++.++++ +.+++        ..++++|+++|++.|..++...++++|++|+++|+++.++...+...|.++++.
T Consensus       100 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg~~~~~~~~~~~~G~~~~~~  178 (432)
T PRK10406        100 VCMMCFGSLVIA-CLPGYETIGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGRKGFYASFQYVTLIGGQLLALL  178 (432)
T ss_pred             HHHHHHHHHHHh-hcCCchhHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHHH
Confidence            999999988874 33432        368899999999999999999999999999999999999998888888888887


Q ss_pred             hHHHhh--------hccCchHHHHHHHHHHHHHHHHHHhhccCCcCcCCCCCcchhhhhhhhhhhhhHHhhccccCCCcH
Q 014481          258 LAPPII--------ENLGWESVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPW  329 (423)
Q Consensus       258 ~~~~l~--------~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  329 (423)
                      +...+.        ..+|||++|++.+++.++.......++|+++.+.      +              +.   .+..++
T Consensus       179 ~~~~~~~~~~~~~~~~~gWr~~F~i~~~~~ll~~~~~~~~~e~~~~~~------~--------------~~---~~~~~~  235 (432)
T PRK10406        179 VVVVLQQTLEDAELREWGWRIPFALGAVLAVVALWLRRQLDETSQQET------R--------------AL---KEAGSL  235 (432)
T ss_pred             HHHHHHHhCCHHHHhccchHHHHHHHHHHHHHHHHHHhcCCCCchHHH------h--------------hh---cccccH
Confidence            765543        2579999999887777655433333333221100      0              00   011246


Q ss_pred             HHhhhcHHHHHHHHHHHH-HHHHHHHHHhhhhHHHHHhhCCChhhHHHHHHHHHHHHHHHHHHHHHHhHHhhhcCC
Q 014481          330 KAIFRSKAVWAMIYAHFC-GSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGV  404 (423)
Q Consensus       330 ~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~r~~  404 (423)
                      +++++++..+...+..++ .....+.+..|+|.|+++.+|++..+++....+..++.+++.++.|+++||++||+.
T Consensus       236 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~grr~~  311 (432)
T PRK10406        236 KGLWRNRRAFIMVLGFTAAGSLCFYTFTTYMQKYLVNTAGMHANVASGIMTAALFVFMLIQPLIGALSDKIGRRTS  311 (432)
T ss_pred             HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHH
Confidence            788899988877665554 366778888999999988889999899888888888888999999999999998854

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=99.97  E-value=8.5e-28  Score=227.55  Aligned_cols=261  Identities=17%  Similarity=0.216  Sum_probs=210.9

Q ss_pred             hHHHHHHHHHHHHHHHhhhhhhhhhHHHhhhhhCCCcchhhHHHHHHHHHHHhhhhhhhhHhhHhcCchHHHHHHHHHHH
Q 014481          112 RYKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSL  191 (423)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~  191 (423)
                      .|+.+..+..+.+..........+.+|.+.+++|+++.+.++..+++.++..+++++.|+++||+|||++++.+.++.++
T Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~   97 (394)
T PRK10213         18 NWSAVFSVAFCVACLIIVEFLPVSLLTPMAQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLLTL   97 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHH
Confidence            44554455555444444555666678899999999999999999999999999999999999999999999999999998


Q ss_pred             HHHHHHHhhhHHHHHHHHHHHHHhhcccchHhHHHHHHhcCCCCchhhHHHHHHhhhhhHHHHHHhhHHHhhhccCchHH
Q 014481          192 ATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESV  271 (423)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw~~~  271 (423)
                      +.+++ ...++++.++++|+++|++.+...+...+++.|++|+++|++++++...+.++|.++||++++.+.+.+|||+.
T Consensus        98 ~~~~~-~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~  176 (394)
T PRK10213         98 SCLLV-SFANSFSLLLIGRACLGLALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGELIGWRNV  176 (394)
T ss_pred             HHHHH-HHHChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHH
Confidence            88776 45788899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHH-hhccCCcCcCCCCCcchhhhhhhhhhhhhHHhhccccCCCcHHHhhhcHHHHHHHHHHHHHHH
Q 014481          272 FYIFGLLGIAWFSGFK-ILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSW  350 (423)
Q Consensus       272 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  350 (423)
                      |++.+++.++..+... ..|+.++++    +..                      ...+++.+++|.++...+..++...
T Consensus       177 f~~~~~l~~~~~l~~~~~~p~~~~~~----~~~----------------------~~~~~~~l~~~~~~~~~~~~~~~~~  230 (394)
T PRK10213        177 FNAAAVMGVLCIFWIIKSLPSLPGEP----SHQ----------------------KQNTFRLLQRPGVMAGMIAIFMSFA  230 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHCCCCCccc----ccc----------------------hhHHHHHhcCHHHHHHHHHHHHHHH
Confidence            9998877665443332 233321100    000                      0013567889999887776666666


Q ss_pred             HHHHHHhhh-hHHHHHhhCCChhhHHHHHHHHHHHHHHHHHHHHHHhHHhh
Q 014481          351 GHYTCLSWL-PTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLI  400 (423)
Q Consensus       351 ~~~~~~~~~-~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~  400 (423)
                      ..+....++ |.|. +++|+++.+.+.+....+++++++.++.+++.||.+
T Consensus       231 ~~~~~~~~~~p~~~-~~~g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r~~  280 (394)
T PRK10213        231 GQFAFFTYIRPVYM-NLAGFGVDGLTLVLLSFGIASFVGTSLSSFILKRSV  280 (394)
T ss_pred             HHHHHHHHHHHHHH-HhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            666666676 5555 457999999999999999999999999999999854

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=99.97  E-value=4.7e-28  Score=229.36  Aligned_cols=269  Identities=18%  Similarity=0.226  Sum_probs=223.4

Q ss_pred             HHHHHHHHHHHHHHhhhhhhhhhHHHhhhhhCCCcchhhHHHHHHHHHHHhhhhhhhhHhhHhcCchHHHHHHHHHHHHH
Q 014481          114 KLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLAT  193 (423)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~  193 (423)
                      +.+..+.+..+..........+.+|.+.+++|.++.+.+++.+++.++..+++++.|++.||+|||+++..+.++.+++.
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~   84 (385)
T TIGR00710         5 AFALLLGCLSILGPLGIDMYLPAFPEIAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSS   84 (385)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHH
Confidence            44444444455666777888889999999999999999999999999999999999999999999999999999988888


Q ss_pred             HHHHHhhhHHHHHHHHHHHHHhhcccchHhHHHHHHhcCCCCchhhHHHHHHhhhhhHHHHHHhhHHHhhhccCchHHHH
Q 014481          194 ALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFY  273 (423)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw~~~~~  273 (423)
                      +++ ...++++.+++.|++.|++.+...+...+++.|++|+++|++++++.+....+|..+||.+++.+.+..+||+.|+
T Consensus        85 ~~~-~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~  163 (385)
T TIGR00710        85 LGL-ALSNNIETLLVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVWLSWHAIFA  163 (385)
T ss_pred             HHH-HHHccHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHH
Confidence            776 4567788999999999999999999999999999999999999999999999999999999999999899999999


Q ss_pred             HHHHHHHHHHHHHHh-hccCCcCcCCCCCcchhhhhhhhhhhhhHHhhccccCCCcHHHhhhcHHHHHHHHHHHHHHHHH
Q 014481          274 IFGLLGIAWFSGFKI-LQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGH  352 (423)
Q Consensus       274 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  352 (423)
                      +.+++.++..+..++ .+|+++.+.+   .+.+     +    .         ...+++++++|.++...+...+.....
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-----~----~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (385)
T TIGR00710       164 FLSLAGILLSALIFFILPETLPYEAR---IQIS-----T----Y---------FETFLLLLKSKMFWGYALIYGASFGGF  222 (385)
T ss_pred             HHHHHHHHHHHHHHHhCCCCCCCccc---CCHH-----H----H---------HHHHHHHHcCchhHHHHHHHHHHHHHH
Confidence            988877665544433 4443322111   0000     0    0         012467788999988877777777777


Q ss_pred             HHHHhhhhHHHHHhhCCChhhHHHHHHHHHHHHHHHHHHHHHHhHHhhhcCC
Q 014481          353 YTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGV  404 (423)
Q Consensus       353 ~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~r~~  404 (423)
                      +....+.|.++++.+|+++.+.+.+.....++.+++.++.|++.||+++|+.
T Consensus       223 ~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~~~  274 (385)
T TIGR00710       223 FAFFSGAPFVYIDIMGVSPSVFGLLFALNIIAMIFGGFLNGRFIKKWGAKSL  274 (385)
T ss_pred             HHHHHcChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHH
Confidence            7888889999988889999999999999999999999999999999998754

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=99.97  E-value=1.5e-28  Score=231.13  Aligned_cols=264  Identities=13%  Similarity=0.120  Sum_probs=212.4

Q ss_pred             HHHHHHHHHHHHHHHhhhhhhhhhHHHhhh-hhCCCcchhhHHHHHHHHHHHhhhhhhhhHhhHhcCchHHHHHHHHHHH
Q 014481          113 YKLIGTTSLAFVICNMDKVNLSVAIIPMSH-RFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSL  191 (423)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~  191 (423)
                      ++.+....+++++.+.....+++..+.+.+ ++|+|.++.+++.+++.+++.++.++.|++.||+|.|+++.++.+++++
T Consensus        33 ~r~l~~s~~~f~~~F~~w~~~~~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll~~i  112 (462)
T PRK15034         33 RRNLWISVSCLLLAFCVWMLFSAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAILII  112 (462)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHH
Confidence            467778888899999999999999888766 8999999999999999999999999999999999999999999999988


Q ss_pred             HHHHHHHh----hhHHHHHHHHHHHHHhhcccchHhHHHHHHhcCCCCchhhHHHHHHhhhhhHHHHHHhhHHHhh----
Q 014481          192 ATALLPLL----AGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPII----  263 (423)
Q Consensus       192 ~~~~~~~~----~~~~~~~~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~----  263 (423)
                      ..++.+..    .++++.+++.|++.|++ +..++.....+++|+|+++||+++|+.....++|..++++++..+.    
T Consensus       113 ~~~~~~~a~~~~~~s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~p~~i~~~l  191 (462)
T PRK15034        113 PCVWLGIAVQNPNTPFGIFIVIALLCGFA-GANFASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLVAPLVIFVPV  191 (462)
T ss_pred             HHHHHHHHHcccCCCHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence            88777543    16789999999999998 7788999999999999999999999998777777776666655433    


Q ss_pred             -h-------------ccCchHHHHHHHHHHHHHHHHHHhhccCCcCcCCCCCcchhhhhhhhhhhhhHHhhccccCCCcH
Q 014481          264 -E-------------NLGWESVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPW  329 (423)
Q Consensus       264 -~-------------~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  329 (423)
                       .             ..+||.++++.+++.++..+..++..++++..+.   ..                       ..+
T Consensus       192 ~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~~~~~~~~~~~---~~-----------------------~~~  245 (462)
T PRK15034        192 FAFLGVNGVPQADGSVMSLANAAWIWVPLLAIATIAAWSGMNDIASSRA---SI-----------------------ADQ  245 (462)
T ss_pred             HHHhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccc---CH-----------------------HHH
Confidence             2             2347888888888777666555555444332100   00                       014


Q ss_pred             HHhhhcHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhhCCChhhHHHHHHHHHHHHHHHHHHHHHHhHHhhhcCCc
Q 014481          330 KAIFRSKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVE  405 (423)
Q Consensus       330 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~r~~~  405 (423)
                      .+++|+|+.|.+++.+++.+..+.++..++|.|+++.+  +.........+..+...++++++|+++||+|+++..
T Consensus       246 ~~vlk~~~~Wllslly~~tFG~fvg~s~~lp~~~~~~~--~~~~~l~~~~l~~l~~~l~rplgG~LADRiG~~~vl  319 (462)
T PRK15034        246 LPVLQRLHLWLLSLLYLATFGSFIGFSAGFAMLAKTQF--PDVNILRLAFFGPFIGAIARSVGGAISDKFGGVRVT  319 (462)
T ss_pred             HHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHc--ChHHHHHHHHHHHHHHHHHHHhhHHHHHhcCchHHH
Confidence            67899999999999999999999999999999998754  333333334455678888999999999999988543

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=99.97  E-value=6.1e-29  Score=223.07  Aligned_cols=273  Identities=21%  Similarity=0.260  Sum_probs=236.6

Q ss_pred             hHHHHHHHHHHHHHHHhhhhhhhhhHHHhhhhhCCCcchhhHHHHHHHHHHHhhhhhhhhHhhHhcCchHHHHHHHHHHH
Q 014481          112 RYKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSL  191 (423)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~  191 (423)
                      +++.+.+..+...+.+..+.++++..+.+.+++|+|+.|.+++.++..+...+..++.|.+.||+|.|++..++.++..+
T Consensus        12 ~~~~L~~S~~af~v~F~VW~l~s~l~~~i~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~~l~~I   91 (417)
T COG2223          12 ARRNLWLSTLAFDVGFMVWTLFSPLGVFIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSMLLLLI   91 (417)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHHHHHHH
Confidence            45777888888888999999999999999999999999999999999999999999999999999999999999999888


Q ss_pred             HHHHHHHhhh--HHHHHHHHHHHHHhhcccchHhHHHHHHhcCCCCchhhHHHHHHhhhhhHHHHHHhhHHHhhhccC--
Q 014481          192 ATALLPLLAG--FMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLG--  267 (423)
Q Consensus       192 ~~~~~~~~~~--~~~~~~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g--  267 (423)
                      ..+..+...+  +++.+++++++.|++ |+...+...+++.+||++++|.++|++. ..|+|..+..+++..++...|  
T Consensus        92 P~~~~~~a~~~~~~~~ll~~gll~G~~-GasFav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v~~~~g~~  169 (417)
T COG2223          92 PCLGLAFAVTYPSTWQLLVIGLLLGLA-GASFAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLVAVAFGFL  169 (417)
T ss_pred             HHHHHHHHccCCchHHHHHHHHHHhcc-cceehcccccccccCChhhhhHHHHHhc-cccccHHHHHHHHHHHHHHHhhH
Confidence            8877754433  345999999999998 5566888999999999999999999999 999999999999999998888  


Q ss_pred             -chHHHHHHHHHHHHHHHHHHhhccCCcCcCCCCCcchhhhhhhhhhhhhHHhhccccCCCcHHHhhhcHHHHHHHHHHH
Q 014481          268 -WESVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHF  346 (423)
Q Consensus       268 -w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  346 (423)
                       |+.+.++..+..++..+..++..++.+......++...                     ..++.++++++.|.+++.++
T Consensus       170 ~w~~~~~i~~~~l~v~~v~~~~~~~d~p~~r~~~~~~~~---------------------~~~~~v~~~~~~W~lsllY~  228 (417)
T COG2223         170 AWRNVAGIYVVALAIAAVLAWLGMNDVPEHRASVKPQLP---------------------AQLKAVFSNKDTWLLSLLYF  228 (417)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCChhhhccccccch---------------------hHHHHHhcCcchHHHHHHHH
Confidence             99999998888888777666665555432111111100                     12578899999999999999


Q ss_pred             HHHHHHHHHHhhhhHHHHHhhCCChhhHHHHHHHHHHHHHHHHHHHHHHhHHhhhcCCccc
Q 014481          347 CGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETT  407 (423)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~r~~~~~  407 (423)
                      ..+.++.++..++|.|++++||.++.+++.......+.+.+.++++|+++||+|.+|....
T Consensus       229 ~tFG~Fvgfs~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~rv~~~  289 (417)
T COG2223         229 ATFGGFVGFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRIGGRRVTLA  289 (417)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhhccchhHHHH
Confidence            9999999999999999999999999999999999999999999999999999998865443

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=99.97  E-value=2.6e-28  Score=242.63  Aligned_cols=186  Identities=14%  Similarity=0.163  Sum_probs=165.2

Q ss_pred             chhHHHHHHHHHHHHHHHhhhhhhhhhHHHhhhhhCCCcchhhHHHHHHHHHHHhhhhhhhhHhhHhcCchHHHHHHHHH
Q 014481          110 PQRYKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIW  189 (423)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~  189 (423)
                      +..|.+++++.++.+...++...++..+|.+.+++|++..+.+++.+++.++.+++++++|+++||+|||++++++.++.
T Consensus       163 ~~~~~l~~i~~l~~~~~g~d~~~is~ilp~i~~~~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR~GRR~~lii~lil~  242 (742)
T TIGR01299       163 RFQWALFFVLGLALMADGVEVFVVGFVLPSAEKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKLGRKQCLLICLSVN  242 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence            45677777778888888888888999999999999999999999999999999999999999999999999999999998


Q ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHHhhcccchHhHHHHHHhcCCCCchhhHHHHHHhhhhhHHHHHHhhHHHhhhc----
Q 014481          190 SLATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIEN----  265 (423)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~----  265 (423)
                      +++.+++ .++++++.++++|++.|++.++..+...+++.|++|+++|++.++++..+..+|.++++.++..+...    
T Consensus       243 ~i~~ll~-afa~s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~la~~il~~~G~~  321 (742)
T TIGR01299       243 GFFAFFS-SFVQGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAIIPHYGWS  321 (742)
T ss_pred             HHHHHHH-HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch
Confidence            8888777 46677899999999999999999999999999999999999999999999999999999988776543    


Q ss_pred             ---------cCchHHHHHHHHHHHHHHHHHHhhccCCcCc
Q 014481          266 ---------LGWESVFYIFGLLGIAWFSGFKILQEGETSN  296 (423)
Q Consensus       266 ---------~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (423)
                               .+||+.+++.++..++.++..+++||+++..
T Consensus       322 ~~~g~~~~~~gWR~l~~i~~lp~ll~ll~~~~lPESPrwL  361 (742)
T TIGR01299       322 FQMGSAYQFHSWRVFVIVCAFPCVFAIGALTFMPESPRFF  361 (742)
T ss_pred             hccccccccccHHHHHHHHHHHHHHHHHHHHHcCCCHHHH
Confidence                     3689999988888877777788889987653

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>PRK03699 putative transporter; Provisional

Probab=99.97  E-value=6.5e-28  Score=228.82  Aligned_cols=269  Identities=17%  Similarity=0.188  Sum_probs=220.3

Q ss_pred             hhHHHHHHHHHHHHHHHhhhhhhhhhHHHhhhhhCCCcchhhHHHHHHHHHHHhhhhhhhhHhhHhcCchHHHHHHHHHH
Q 014481          111 QRYKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWS  190 (423)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~  190 (423)
                      +|++.....++.+++........+..+|.+.+++|++..+.+++.+.+.+++.+++++.|++.||+|||++++.+.++.+
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~g~r~~~~~~~~~~~   83 (394)
T PRK03699          4 NRIKLTWISFLSYALTGALVIVTGMVMGPIAEYFNLPVSSMSNTFTFLNAGILISIFLNAWLMEIIPLKRQLIFGFALMI   83 (394)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            35677777788888888888899999999999999999999999999999999999999999999999999999998888


Q ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHhhcccchHhHHHHHHhcCCCCchhhHHHHHHhhhhhHHHHHHhhHHHhhh-ccCch
Q 014481          191 LATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIE-NLGWE  269 (423)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~-~~gw~  269 (423)
                      ++.++. ...++++.++++|++.|++.+...+...+++.+++|+++|+++++..+....+|..++|.+.+.+.. ..|||
T Consensus        84 i~~~l~-~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~gw~  162 (394)
T PRK03699         84 LAVAGL-MFSHSLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIAAYLLARSIEWY  162 (394)
T ss_pred             HHHHHH-HHcchHHHHHHHHHHHHHhhHhhccchhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHH
Confidence            888777 4567788899999999999998888889999999998899999999999999999999999888764 57999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhccCCcCcCCCCCcchhhhhhhhhhhhhHHhhccccCCCcHHHhhhcHHHHHHHHHHHHHH
Q 014481          270 SVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGS  349 (423)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  349 (423)
                      +.|.+.+++.++..+..++. +.++.++.+. +++                 +...    +. ..++.++...+..++..
T Consensus       163 ~~f~~~~~~~~~~~~~~~~~-~~p~~~~~~~-~~~-----------------~~~~----~~-~~~~~~~~~~~~~~~~~  218 (394)
T PRK03699        163 WVYACIGLVYVAIFILTLFS-EFPALGKHAP-KAD-----------------KPVA----KE-KWGIGVLFLAIAALLYI  218 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHhc-CCccccccCc-ccc-----------------Cccc----cc-cCChHHHHHHHHHHHHH
Confidence            99999888776655444332 2111111000 000                 0000    01 12456777777777777


Q ss_pred             HHHHHHHhhhhHHHHHhhCCChhhHHHHHHHHHHHHHHHHHHHHHHhHHhhhcCC
Q 014481          350 WGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGV  404 (423)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~r~~  404 (423)
                      ..++.+..|+|.|+++.+|+++.+++.+.+...++.++++++.|++.||+++|+.
T Consensus       219 ~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~  273 (394)
T PRK03699        219 LAQLTFISWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFFDLQRI  273 (394)
T ss_pred             HHHHHHHHHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHhchhhH
Confidence            7888889999999988889999999999999999999999999999999998854

>TIGR00891 2A0112 putative sialic acid transporter

Probab=99.97  E-value=5.3e-28  Score=230.51  Aligned_cols=292  Identities=15%  Similarity=0.196  Sum_probs=220.5

Q ss_pred             hhHHHHHHHHHHHHHHHhhhhhhhhhHHHhhhhhCCCcchhhHHHHHHHHHHHhhhhhhhhHhhHhcCchHHHHHHHHHH
Q 014481          111 QRYKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWS  190 (423)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~  190 (423)
                      ++|+.+..++++++...++....++..|.+.+++|++..+.+++.+++.++..+++++.|+++||+|||++++++.++.+
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~   88 (405)
T TIGR00891         9 AQWNAFSAAWLGWLLDAFDFFLVALVLAEVAGEFGLTTVDAASLISAALISRWFGALMFGLWGDRYGRRLPMVTSIVLFS   88 (405)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence            46788888999999999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHhhcccchHhHHHHHHhcCCCCchhhHHHHHHhhhhhHHHHHHhhHHHhhhccC--c
Q 014481          191 LATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLG--W  268 (423)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g--w  268 (423)
                      ++.+++ ...++++.+++.|++.|++.+...+...+++.|++|+++|++++++.+.+..+|.++++.+++.+.+..+  |
T Consensus        89 ~~~~~~-~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~w  167 (405)
T TIGR00891        89 AGTLAC-GFAPGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVPVWGDGW  167 (405)
T ss_pred             HHHHHH-HHhccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccH
Confidence            888777 4567789999999999999999999999999999999999999999999999999999999999988766  9


Q ss_pred             hHHHHHHHHHHHHHHHHHHhhccCCcCcCCCCCcchhhhhhhhhhhhhHHhhccccC--CCcHHHhh-hc-HHHHHHHHH
Q 014481          269 ESVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLK--DVPWKAIF-RS-KAVWAMIYA  344 (423)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~-~~~~~~~l~  344 (423)
                      |+.|++.++..++..+....+||+++.++.+..++.......+..... ...+...+  ....++.. ++ +.+....+.
T Consensus       168 ~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (405)
T TIGR00891       168 RALFFISILPIIFALWLRKNIPEAEDWKEKHAGKALVRTMVDILYGGE-HRIANIVMTLAAAMVQSAGKRWPTFVYLVVL  246 (405)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCChhHHHHhhhhhhhhhHHHHHhccc-hhhhhhhhhhhHHhhhhhhhhhHHHHHHHHH
Confidence            999988766665555555555554332111110000000000000000 00000000  00001111 11 112223333


Q ss_pred             HHHHHHHHHHHHhhhhHHHHHhhCCChhhHHHHHHHHHHHHHHHHHHHHHHhHHhhhcCC
Q 014481          345 HFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGV  404 (423)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~r~~  404 (423)
                      ..+..........++|.|+.+.+|++..+++.+.+...++.+++.++.+++.||+++|+.
T Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~g~~~~  306 (405)
T TIGR00891       247 VLFANLYSHPIQDLLPTYLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWLGRRKA  306 (405)
T ss_pred             HHHHHHHHhhhhhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhh
Confidence            444445555667789999988889999999999999999999999999999999998854

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=99.97  E-value=1.7e-28  Score=229.08  Aligned_cols=251  Identities=17%  Similarity=0.097  Sum_probs=197.0

Q ss_pred             HHhhhhhhhhhHHHhhhhhCCCcchhhHHHHHHHHHHHhhhhhhhhHhhHhcCchHHHHHHHHHHHHHHHHHHhhhHHHH
Q 014481          126 CNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPG  205 (423)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (423)
                      +......+++.+|.+.+++|++..+.|++.+.+.+++.+++++.|+++||+|||++++.+.+....+ .+.....++++.
T Consensus         3 ~~~~~~~~~~~lp~i~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~-~~~~~~~~~~~~   81 (368)
T TIGR00903         3 SQAIWVTFSPVLSLVAEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAA-AGRLLDPFNYEW   81 (368)
T ss_pred             hhHHHHHHHhhHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHH-HHHHHHhccHHH
Confidence            4456678889999999999999999999999999999999999999999999988766554444333 333233367899


Q ss_pred             HHHHHHHHHhhcccchHhHHHHHHhcCCCCchhhHHHHHHhhhhhHHHHHHhhHHHhhhccCchHHHHHHHHHHHHHH-H
Q 014481          206 LVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWF-S  284 (423)
Q Consensus       206 ~~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw~~~~~~~~~~~~~~~-~  284 (423)
                      ++++|+++|++.+. .......+++++|+++|++++++.+.+..+|.++++++++.+.+..|||+.|++.+++.++.. +
T Consensus        82 l~~~R~l~G~g~~~-~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~f~~~~~l~~~~~~~  160 (368)
T TIGR00903        82 LLACQLLAALGQPF-LLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTAGGLQLLIIPIAAVAAAGIIL  160 (368)
T ss_pred             HHHHHHHHHhHhHH-HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHH
Confidence            99999999999886 456667779999999999999999999999999999999999999999999999888876654 4


Q ss_pred             HHHhhccCCcCcCCCCCcchhhhhhhhhhhhhHHhhccccCCCcHHHhhhcHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 014481          285 GFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLSWLPTYFS  364 (423)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  364 (423)
                      ..+++||+++...+   ..+.    .+    ..         .++++++++|.+|...+..++....++++.+|+|.|++
T Consensus       161 ~~~~lp~~p~~~~~---~~~~----~~----~~---------~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~wlp~~L~  220 (368)
T TIGR00903       161 VLAALPALPFQAAE---GFGF----KD----AV---------KEFGALAGRKDLWIIGAILGFGVALFDNLAIWLEAALR  220 (368)
T ss_pred             HHHHcCCCCCCCCC---Ccch----HH----HH---------HHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44556665432211   0000    00    00         12678999999999999999999999999999999997


Q ss_pred             HhhCCChhhHHHHHHHHHHHHHHHHHHHHHHhHHhhhcC
Q 014481          365 EELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATG  403 (423)
Q Consensus       365 ~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~r~  403 (423)
                      + .|++.. .+....+..+.++++   .++++||..||+
T Consensus       221 ~-~g~s~~-~~~~~~l~~~~g~~g---~~~~~d~~~r~~  254 (368)
T TIGR00903       221 P-AGLEDI-AGDAVALAILAGLIG---VAVIPDRVARAG  254 (368)
T ss_pred             H-CCCChH-HHHHHHHHHHHHHHH---HHHhhHHhhhhh
Confidence            6 588865 566656655555555   578888887653

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=99.96  E-value=3.7e-28  Score=237.25  Aligned_cols=288  Identities=22%  Similarity=0.230  Sum_probs=232.4

Q ss_pred             HHHHHHHHHHHHHHhhhhhhhhhHHHhhhhhCCCcchhhHHHHHHHHHHHhhhhhhhhHhhHhcCchHHHHHHHHHHHHH
Q 014481          114 KLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLAT  193 (423)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~  193 (423)
                      +.+..++++.++..++.....+.+|.+.+++|.+..+.+++.+.+.++..++.++.|+++||+|||++++++.++.+++.
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~   81 (485)
T TIGR00711         2 LLTIVLMLGTFMAVLDSTIVNVAIPTIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLGS   81 (485)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHH
Confidence            34566777888888999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             HHHHHhhhHHHHHHHHHHHHHhhcccchHhHHHHHHhcCCCCchhhHHHHHHhhhhhHHHHHHhhHHHhhhccCchHHHH
Q 014481          194 ALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFY  273 (423)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw~~~~~  273 (423)
                      +++ ..+++++.++++|+++|++.+...+...+++.|++|+++|+++++++..+..+|..+||.+++++.++.|||+.|+
T Consensus        82 ~~~-~~~~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~  160 (485)
T TIGR00711        82 LLC-GVAPNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENYHWRWIFL  160 (485)
T ss_pred             HHH-hCcCCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhccCcCceehhh
Confidence            777 5667889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHH-HhhccCCcCcCCCCCcchhh---------------hhhhhhh-hh-----------------hHHh
Q 014481          274 IFGLLGIAWFSGF-KILQEGETSNGATLAPRSNY---------------INMKKSL-SA-----------------SLEE  319 (423)
Q Consensus       274 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~-~~-----------------~~~~  319 (423)
                      +.+++.++..+.. ++++++++... +..+....               ....... ..                 ...+
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~d~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (485)
T TIGR00711       161 INVPIGIIVVVVAFFILPRDKPAAS-ENFDFLGLLLLSVGLGSLLYGLSEGPERGWFDSNEILILSITGLVAIIAFVVWE  239 (485)
T ss_pred             hhhHHHHHHHHHHHHHcCCcccccc-CCCcHHHHHHHHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHHHHHHHHHHH
Confidence            9888876654444 34444332211 11110000               0000000 00                 0011


Q ss_pred             hccccCCCcHHHhhhcHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhhCCChhhHHHHHHHHHHHHHHHHHHHHHHhHHh
Q 014481          320 MGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNL  399 (423)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~  399 (423)
                      ...+.+.. -.+++++|.++...+..++..+..+....++|.|+++.+|+++.++++...+..++.+++.++.|++.||+
T Consensus       240 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~  318 (485)
T TIGR00711       240 LTDDNPLV-DLRLFKYRNFTIGCVYMSLLGLGLYGSFYLLPLYLQQVLGYTALQAGLHILPVGLAPMLSSPIAGRMGDKI  318 (485)
T ss_pred             HcCCCCcc-CHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            11111112 24678899998888888888888888899999999998999999999999999999999999999999999


Q ss_pred             hhcCC
Q 014481          400 IATGV  404 (423)
Q Consensus       400 ~~r~~  404 (423)
                      ++|+.
T Consensus       319 ~~~~~  323 (485)
T TIGR00711       319 DPRKL  323 (485)
T ss_pred             CcHHH
Confidence            98753

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=99.96  E-value=8.3e-28  Score=227.74  Aligned_cols=263  Identities=14%  Similarity=0.183  Sum_probs=212.6

Q ss_pred             HHHHHHHHHHHHHHHhhhhhhhhhHHHhhhhhCCCcchhhHHHHHHHHHHHhhhhhhhhHhhHhcCchHHHHHHHHHHHH
Q 014481          113 YKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLA  192 (423)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~  192 (423)
                      |.....++++.+... .....++.+|.+.+++|+|..+.+++.+.+.+++.+++++.|+++||+|||+++..+.++++++
T Consensus         9 ~~~~~~~~~~~~~~~-~~~~~~~~lp~i~~~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~~~~   87 (393)
T PRK09705          9 FMLLVLVLIGLNMRP-LLTSVGPLLPQLRQASGMSFSVAALLTALPVVTMGGLALAGSWLHQHVSERRSVAISLLLIAVG   87 (393)
T ss_pred             HHHHHHHHHHHHcch-hhhccchhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCchHHHHHHHHHHHHH
Confidence            344444444433322 2366778999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhHHHHHHHHHHHHHhhcccchHhHHHHHHhcCCCCchhhHHHHHHhhhhhHHHHHHhhHHHhhhcc-CchHH
Q 014481          193 TALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENL-GWESV  271 (423)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~-gw~~~  271 (423)
                      .+++ .++++++.+++.|+++|++.+...+....++.+++| ++|+++++++..+..+|..+|+.+++++.++. +||+.
T Consensus        88 ~~~~-~~a~~~~~ll~~r~l~Gig~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~~~w~~~  165 (393)
T PRK09705         88 ALMR-ELYPQSALLLSSALLGGVGIGIIQAVMPSVIKRRFQ-QRTPLVMGLWSAALMGGGGLGAAITPWLVQHSETWYQT  165 (393)
T ss_pred             HHHH-HHCcchHHHHHHHHHHHhHHHHHhhhhhHHHHHHcc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHH
Confidence            9888 467778899999999999999999999999999997 88999999999999999999999999988875 89998


Q ss_pred             HHHHHHHHHHHHHHHHhhccCCcCcCCCCCcchhhhhhhhhhhhhHHhhccccCCCcHHHhhhcHHHHHHHHHHHHHHHH
Q 014481          272 FYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWG  351 (423)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  351 (423)
                      +.+.++..++..+..+...+++++.+.+  ++                       ...++.++++..|...+..++....
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-----------------------~~~~~~l~~~~~~~l~~~~~~~~~~  220 (393)
T PRK09705        166 LAWWALPAVVALFAWWWQSAREVASSHK--TT-----------------------TTPVRVVFTPRAWTLGVYFGLINGG  220 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCccccC--CC-----------------------cCCcccccCHhHHHHHHHHHHHHHH
Confidence            8776666554443333332222111000  00                       0113456778888877777777788


Q ss_pred             HHHHHhhhhHHHHHhhCCChhhHHHHHHHHHHHHHHHHHHHHHHhHHhhhcCC
Q 014481          352 HYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGV  404 (423)
Q Consensus       352 ~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~r~~  404 (423)
                      +.....|+|.|+++ +|++..+++.+.++..++.++++++.+++.||+++|+.
T Consensus       221 ~~~~~~~lp~~l~~-~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~~  272 (393)
T PRK09705        221 YASLIAWLPAFYIE-IGASAQYSGSLLALMTLGQAAGALLMPAMARHQDRRKL  272 (393)
T ss_pred             HHHHHHHHHHHHHH-cCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhccchHH
Confidence            88899999999987 79999999999999999999999999999999988744

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=99.96  E-value=1e-28  Score=233.13  Aligned_cols=278  Identities=19%  Similarity=0.242  Sum_probs=221.1

Q ss_pred             HHHHHHhhhhhhhhhHHHhhhhhCCCcchhhHHHHHHHHHHHhhhhhhhhHhhHhcCchHHHHHHHHHHHHHHHHHHhhh
Q 014481          122 AFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAG  201 (423)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~  201 (423)
                      +++..+.+...++...|.+.+++|.+..+.+++.+++.++..++.++.|+++||+|||++++++.++.+++.+++ ...+
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~~~~   81 (379)
T TIGR00881         3 GYAAYYLVRKNFALAMPYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFF-GFST   81 (379)
T ss_pred             hhhHHHHhHHhhhhhhHHHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHH-HHhh
Confidence            456777888899999999999999999999999999999999999999999999999999999999998888777 4566


Q ss_pred             HHHHHHHHHHHHHhhcccchHhHHHHHHhcCCCCchhhHHHHHHhhhhhHHHHHH-hhHHHhhhccCchHHHHHHHHHHH
Q 014481          202 FMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGL-LLAPPIIENLGWESVFYIFGLLGI  280 (423)
Q Consensus       202 ~~~~~~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~-~~~~~l~~~~gw~~~~~~~~~~~~  280 (423)
                      +++.+++.|++.|++.+...+...+++.+++|+++|++++++.+.+..+|..++| .+++.+.+..+||+.|++.+++.+
T Consensus        82 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (379)
T TIGR00881        82 SLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAELYSWHWVFIVPGIIAI  161 (379)
T ss_pred             hHHHHHHHHHHHHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhcCCchhHHHHHHHHHH
Confidence            7899999999999999999999999999999999999999999999999999999 577777778899999999888776


Q ss_pred             HHHHHH-HhhccCCcCcCCCCCcchhhhhhhhhhhhhHHhhccccCCCcHHHhhhcHHHHHHHHHHHHHHHHHHHHHhhh
Q 014481          281 AWFSGF-KILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLSWL  359 (423)
Q Consensus       281 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  359 (423)
                      +..+.. ++.+++++.......++..... .+. .....+......+..++.++++|.+|.+.+..++..........+.
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (379)
T TIGR00881       162 IVSLICFLLLRDSPQSCGLPPAEEMPNEE-PDG-DAEKKEEELTKKQIFLQYVLLNKVLWYISLGYVFVYVVRTGILDWS  239 (379)
T ss_pred             HHHHHHheeeCCCccccccCccccCcccc-ccc-ccccccccccchHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHH
Confidence            654443 3444433221111110000000 000 0000000001112235677899999998888888888888899999


Q ss_pred             hHHHHHhhCCChhhHHHHHHHHHHHHHHHHHHHHHHhHHhhhc
Q 014481          360 PTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIAT  402 (423)
Q Consensus       360 ~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~r  402 (423)
                      |.|+.+.+|+++.+++.+.....++.+++.++.+++.||..+|
T Consensus       240 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~  282 (379)
T TIGR00881       240 PLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNG  282 (379)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCC
Confidence            9999988899999999999999999999999999999987544

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=99.96  E-value=1.1e-28  Score=230.57  Aligned_cols=269  Identities=28%  Similarity=0.424  Sum_probs=217.7

Q ss_pred             HHHHHHHHhhhhhhhhhHH-HhhhhhCCCcchhhHHHHHHHHHHHhhhhhhhhHhhHhcCchHHHHHHHHHHHHHHHHHH
Q 014481          120 SLAFVICNMDKVNLSVAII-PMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPL  198 (423)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~  198 (423)
                      +++.++..+......+.+| .+.+++|.+..+++++.+++.++..+++++.|+++||+|||++++++.++.+++.++.. 
T Consensus         2 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~-   80 (352)
T PF07690_consen    2 FLAFFLSGFGFSIISPALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLLA-   80 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHH-
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHhh-
Confidence            4566777788888889999 89999999999999999999999999999999999999999999999999998855553 


Q ss_pred             hhhHHHHHHHHHHHHHhhcccchHhHHHHHHhcCCCCchhhHHHHHHhhhhhHHHHHHhhHHHhhhccCchHHHHHHHHH
Q 014481          199 LAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLL  278 (423)
Q Consensus       199 ~~~~~~~~~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw~~~~~~~~~~  278 (423)
                      ++++.+.++++|++.|++.+...+...+++.|++|+++|++++++.+.+..+|.++||.+++.+.+..|||+.|++.+++
T Consensus        81 ~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~~~~~~  160 (352)
T PF07690_consen   81 FASNFWLLLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYFGWRWAFLISAIL  160 (352)
T ss_dssp             HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHHCCHHHHHHHH
T ss_pred             hhhhHHHHhhhccccccccccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhccccccccccccch
Confidence            44556799999999999999999999999999999999999999999999999999999999999889999999999999


Q ss_pred             HHHHHHHH-HhhccCCcCcCCCCCcchhhhhhhhhhhhhHHhhccccCCC-cHHHhhhcHHHHHHHHHHHHHHHHHHHHH
Q 014481          279 GIAWFSGF-KILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDV-PWKAIFRSKAVWAMIYAHFCGSWGHYTCL  356 (423)
Q Consensus       279 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  356 (423)
                      .++..++. ++++++++++..+.+.++. .             +.+.+.. .++.+++++.+|...+..++.........
T Consensus       161 ~~~~~il~~~~~~~~~~~~~~~~~~~~~-~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  226 (352)
T PF07690_consen  161 SLIAAILFILFLPEPPPPRERESPKESE-S-------------KKPKPLKPGFKSLFKNPVLWILLIAFFLFFFVFSGFS  226 (352)
T ss_dssp             HHHHHHHHHCCC---STTTT--SSTTTT----------------HHHCCCH-CTHHHHHHCCHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhhhHhhhhhhcccccccccccccc-c-------------ccccccccccccccccchhhhhhhhhhHHHHHHHHhh
Confidence            88876543 3444443333222221110 0             0000011 25677788877756666666666778889


Q ss_pred             hhhhHHHHHhhCCC-hhhHHHHHHHHHHHHHHHHHHHHHHhHHhhhcC
Q 014481          357 SWLPTYFSEELSLN-LTEAAWVSILPPLASVLVTSIAAQFADNLIATG  403 (423)
Q Consensus       357 ~~~~~~~~~~~g~s-~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~r~  403 (423)
                      .++|.|+.+.+|++ ..+.+.+..+..++++++.++.|++.||+++|+
T Consensus       227 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  274 (352)
T PF07690_consen  227 FFLPLYLQEVLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRFGRRR  274 (352)
T ss_dssp             HHHHHHCCHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             cccchhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHH
Confidence            99999988889999 889999999999999999999999999988753

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>PRK10091 MFS transport protein AraJ; Provisional

Probab=99.96  E-value=9.7e-28  Score=226.68  Aligned_cols=263  Identities=16%  Similarity=0.253  Sum_probs=217.0

Q ss_pred             HHHHHHHHHHHHHhhhhhhhhhHHHhhhhhCCCcchhhHHHHHHHHHHHhhhhhhhhHhhHhcCchHHHHHHHHHHHHHH
Q 014481          115 LIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATA  194 (423)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~  194 (423)
                      .+..+.+..+..........+.+|.+.+++|.+..+.|++.+.+.+++.++++++|+++||+|||+++.++.++.+++.+
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~   83 (382)
T PRK10091          4 VILSLALGTFGLGMAEFGIMGVLTELAHDVGISIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGNA   83 (382)
T ss_pred             hHHHHHHHHHHHHhhHHHHHhChHHHHHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHH
Confidence            34556667777778888888999999999999999999999999999999999999999999999999999999999887


Q ss_pred             HHHHhhhHHHHHHHHHHHHHhhcccchHhHHHHHHhcCCCCchhhHHHHHHhhhhhHHHHHHhhHHHhhhccCchHHHHH
Q 014481          195 LLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYI  274 (423)
Q Consensus       195 ~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw~~~~~~  274 (423)
                      ++ ..+++++.+++.|++.|++.+...+....++.+++++++|+++++++..+..+|..+||++++.+.+..|||+.|++
T Consensus        84 l~-~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gwr~~f~~  162 (382)
T PRK10091         84 MF-TLSSSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQEFSWRYTFLL  162 (382)
T ss_pred             HH-HHhCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhhhccHHHHHHH
Confidence            76 56778899999999999999988888889999999989999999999999999999999999999998999999999


Q ss_pred             HHHHHHHHHHH-HHhhccCCcCcCCCCCcchhhhhhhhhhhhhHHhhccccCCCcHHHhhhcHHHHHHHHHHHHHHHHHH
Q 014481          275 FGLLGIAWFSG-FKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHY  353 (423)
Q Consensus       275 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  353 (423)
                      .+++.++..+. .+.+|+.+++.+    .+.     +                 ...+.++++..|......++.....+
T Consensus       163 ~~~~~~~~~~~~~~~lp~~~~~~~----~~~-----~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~  216 (382)
T PRK10091        163 IAVFNIAVLASIYFWVPDIRDEAK----GGL-----R-----------------EQFHFLRSPAPWLIFAATMFGNAGVF  216 (382)
T ss_pred             HHHHHHHHHHHHHHhCCCCCcccc----cCH-----H-----------------HHHHHhcChHHHHHHHHHHHHHHHHH
Confidence            88877665443 334444321100    000     0                 01245677777766655555555555


Q ss_pred             HHHhhhhHHHHHhhCCChhhHHHHHHHHHHHHHHHHHHHHHHhHHhhhcCC
Q 014481          354 TCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGV  404 (423)
Q Consensus       354 ~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~r~~  404 (423)
                      ....+++.|+.+.+|+++.+.+++.....++.++++++.+++.||+++|+.
T Consensus       217 ~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~~~~~~  267 (382)
T PRK10091        217 AWFSYIKPYMMFISGFSETSMTFIMMLVGLGMVLGNLLSGRLSGRYSPLRI  267 (382)
T ss_pred             HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHHheeccccCchhH
Confidence            566677888887789999999999999999999999999999999998754

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.96  E-value=2.7e-27  Score=230.59  Aligned_cols=280  Identities=20%  Similarity=0.161  Sum_probs=208.0

Q ss_pred             HHHHHHHHHHHHHHHhhhhhhhhhHHHhhhhhCCCcch-hhH-----HHHHHHHHHHhhhhhhhhHhhHhcCchHHHHHH
Q 014481          113 YKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSV-AGL-----VQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGV  186 (423)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~-~~~-----~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~  186 (423)
                      ++.+....++.++.+++...++...|.+.++++.+... .++     +.++..+++.++++++|+++||+|||+++.++.
T Consensus        15 ~~~~~~~~~g~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~   94 (490)
T PRK10642         15 RKAITAASLGNAMEWFDFGVYGFVAYALGKVFFPGADPSVQMIAALATFSVPFLIRPLGGLFFGMLGDKYGRQKILAITI   94 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence            35666778899999999999999999999998644322 222     247778999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhhHHH--------HHHHHHHHHHhhcccchHhHHHHHHhcCCCCchhhHHHHHHhhhhhHHHHHHhh
Q 014481          187 LIWSLATALLPLLAGFMP--------GLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLL  258 (423)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~--------~~~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~  258 (423)
                      ++++++.++++ ++++++        .++++|+++|++.|+.++...++++|++|+++|+++.++...+..+|..+|+.+
T Consensus        95 ~l~~i~~~~~a-~~~~~~~~g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~G~~lg~~~  173 (490)
T PRK10642         95 VIMSISTFCIG-LIPSYATIGIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRKRGFMGSWLDFGSIAGFVLGAGV  173 (490)
T ss_pred             HHHHHHHHHHH-hcccHHHHHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHH
Confidence            99999998884 555554        388999999999999999999999999999999999999998888888888876


Q ss_pred             HHHhh--------hccCchHHHHHHHHHHHHHHHHHHhhccCCcCcCCCCCcchhhhhhhhhhhhhHHhhccccCCCcHH
Q 014481          259 APPII--------ENLGWESVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWK  330 (423)
Q Consensus       259 ~~~l~--------~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  330 (423)
                      ...+.        ..+|||+.|++.+++.++.+++...++|++.......+.+       +..    .+...+.+..+++
T Consensus       174 ~~~~~~~~~~~~~~~~gWR~~f~i~~~~~l~~~~~~~~~~esp~~~~~~~~~~-------~~~----~~~~~~~~~~~~~  242 (490)
T PRK10642        174 VVLISTIVGEANFLDWGWRIPFFIALPLGIIGLYLRHALEETPAFQQHVDKLE-------QGD----REGLQDGPKVSFK  242 (490)
T ss_pred             HHHHHHhcCHHHhcCccHHHHHHHHHHHHHHHHHHHHcCCCChhHHHHHHhhh-------hhc----cccccccccCCHH
Confidence            65443        2579999999977666554444445555433211000000       000    0000011233466


Q ss_pred             Hhhhc-HHHHHH-HHHHHHHHHHHHHHHhhhhHHHHHhhCCChhhHHHHHHHHHHHHHHHHHHHHHHhHHhhhcCC
Q 014481          331 AIFRS-KAVWAM-IYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGV  404 (423)
Q Consensus       331 ~~~~~-~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~r~~  404 (423)
                      +++++ +..+.. ....++....++.+..|+|.|+++.+|++..+.++......++.+++.++.|+++||+|||+.
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~  318 (490)
T PRK10642        243 EIATKHWRSLLTCIGLVIATNVTYYMLLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPF  318 (490)
T ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHH
Confidence            66653 333322 233344556778888999999988789998888888888889999999999999999998854

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=99.96  E-value=3.8e-27  Score=224.69  Aligned_cols=274  Identities=17%  Similarity=0.155  Sum_probs=224.3

Q ss_pred             chhHHHHHHHHHHHHHHHhhhhhhhhhHHHhhhhhCCCcchhhHHHHHHHHHHHhhhhhhhhHhhHhcCchHHHHHHHHH
Q 014481          110 PQRYKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIW  189 (423)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~  189 (423)
                      ++.+.....+.+..++..+....+.+.+|.+.+++|.+..+.++..+.+.+++.+++++.|+++||+|||++++++.++.
T Consensus         9 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~   88 (406)
T PRK15402          9 RQALLFPLCLVLFEFATYIANDMIQPGMLAVVEDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVAFF   88 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhhHhcchHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHH
Confidence            34555666677777777888888889999999999999999999999999999999999999999999999999999888


Q ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHHhhcccchHhHHHHHHhcCCCCchhhHHHHHHhhhhhHHHHHHhhHHHhhhccCch
Q 014481          190 SLATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWE  269 (423)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw~  269 (423)
                      +++.+++ ...++++.+++.|++.|++.+...+...+++.|++|+++|++++++......+|..+||.+++.+.+..+||
T Consensus        89 ~~~~~~~-~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~w~  167 (406)
T PRK15402         89 ILTCLAI-LLAQSIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALIHVLPWR  167 (406)
T ss_pred             HHHHHHH-HHHccHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcc
Confidence            8888776 456778889999999999999888889999999999999999999999888999999999999999988999


Q ss_pred             HHHHHHHHHHHHHHHHHH-hhccCCcCcCCCCCcchhhhhhhhhhhhhHHhhccccCCCcHHHhhhcHHHHHHHHHHHHH
Q 014481          270 SVFYIFGLLGIAWFSGFK-ILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCG  348 (423)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  348 (423)
                      +.|++.+++.++..+..+ ..|+++++...+    ...    +.   .         ..+++.++++|.++...+..++.
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~----~~---~---------~~~~~~~~~~~~~~~~~~~~~~~  227 (406)
T PRK15402        168 GMFVLFAALAALSFFGLWRAMPETAGRVGEK----LSL----KE---L---------GRDYKLVLKNRRFVAGALALGLV  227 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCCCcccccc----ccH----HH---H---------HHHHHHHHcCcHHHHHHHHHHHH
Confidence            999998888776654433 344432211100    000    00   0         01246788999998888777777


Q ss_pred             HHHHHHHHhhhhHHHHHhhCCChhhHHHHHHHHHHHHHHHHHHHHHHhHHhhhcCC
Q 014481          349 SWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGV  404 (423)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~r~~  404 (423)
                      .........+.|.|+.+.+|+++.+.+.......++.+++.++.+++.||+++|+.
T Consensus       228 ~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~~~~~~  283 (406)
T PRK15402        228 SLPLLAWIALSPVILISGEQLSSYEYGLLQVPVFGALIAGNLTLARLTSRRPLRSL  283 (406)
T ss_pred             HHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHH
Confidence            66666777788999888889999999988888888899999999999999998754

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=99.96  E-value=4.1e-27  Score=224.16  Aligned_cols=261  Identities=18%  Similarity=0.224  Sum_probs=215.4

Q ss_pred             HHHHHHHHHHhhhhhhhhhHHHhhhhhCCCcchhhHHHHHHHHHHHhhhhhhhhHhhHhcCchHHHHHHHHHHHHHHHHH
Q 014481          118 TTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLP  197 (423)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~  197 (423)
                      .+.+..++..+......+.+|.+.+++|.+..+.++..+++.+++.++++++|+++||+|||++++.+.++++++.+++ 
T Consensus        20 ~~~~~~~~~~~~~~~~~p~l~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~-   98 (413)
T PRK15403         20 ALILYDFAAYLTTDLIQPGIINVVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAAT-   98 (413)
T ss_pred             HHHHHHHHHHHHHHhhccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHHH-
Confidence            3444555666778888999999999999999999999999999999999999999999999999999999998888777 


Q ss_pred             HhhhHHHHHHHHHHHHHhhcccchHhHHHHHHhcCCCCchhhHHHHHHhhhhhHHHHHHhhHHHhhhccCchHHHHHHHH
Q 014481          198 LLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGL  277 (423)
Q Consensus       198 ~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw~~~~~~~~~  277 (423)
                      ..+++++.++++|+++|++.+...+....++.|++++++|+++++++.....+|..+||++++.+.+..|||+.|++.++
T Consensus        99 ~~a~~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~~~f~~~~~  178 (413)
T PRK15403         99 LFTTSMTQFLIARFIQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFVHWKVLFAIIAV  178 (413)
T ss_pred             HHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence            46778899999999999998876777788899999999999999999999999999999999999988899999999988


Q ss_pred             HHHHHHHH-HHhhccCCcCcCCCCCcchhhhhhhhhhhhhHHhhccccCCCcHHHhhhcHHHHHHHHHHHHHHHHHHHHH
Q 014481          278 LGIAWFSG-FKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCL  356 (423)
Q Consensus       278 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  356 (423)
                      +.++..+. .+.+||++++++++   ...    ..    .         ...++++++||.+|...+..++.....+.+.
T Consensus       179 ~~~i~~~~~~~~lp~~~~~~~~~---~~~----~~----~---------~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~  238 (413)
T PRK15403        179 MGLIAFVGLLLAMPETVKRGAVP---FSA----KS----V---------LRDFRNVFRNRLFLTGAATLSLSYIPMMSWV  238 (413)
T ss_pred             HHHHHHHHHHHhCCCCccccCCC---CCh----HH----H---------HHHHHHHHcCHHHHHHHHHHHHHHHHHHHHH
Confidence            87766544 34456543321110   000    00    0         0125788999999998888888888888888


Q ss_pred             hhhhHHHHHhhCCChhhHHHHHHHHHHHHHHHHHHHHHHhHHh
Q 014481          357 SWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNL  399 (423)
Q Consensus       357 ~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~  399 (423)
                      .+.|.++++.+|+++.+.++.......+.+++..+.+++.++.
T Consensus       239 ~~~P~~l~~~~g~s~~~~gl~~~~~~~~~~i~~~l~~~~~~~~  281 (413)
T PRK15403        239 AVSPVILIDAGGMTTSQFAWTQVPVFGAVIVANAIVARFVKDP  281 (413)
T ss_pred             HhChHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence            8899999998899999999988888888888877777766443

>PRK12307 putative sialic acid transporter; Provisional

Probab=99.96  E-value=3.3e-27  Score=226.66  Aligned_cols=281  Identities=19%  Similarity=0.240  Sum_probs=216.7

Q ss_pred             hhHHHHHHHHHHHHHHHhhhhhhhhhHHHhhhhhCCCcchhhHHHHHHHHHHHhhhhhhhhHhhHhcCchHHHHHHHHHH
Q 014481          111 QRYKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWS  190 (423)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~  190 (423)
                      .+++.+....+.++...++.....+..|.+.+++|+++.+.+++.+++.++..+++++.|+++||+|||++++++.++.+
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~~~~~~   94 (426)
T PRK12307         15 PQKNALFSAWLGYVFDGFDFMLIFYIMYLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVAYS   94 (426)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHH
Confidence            34566777888888888999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHhhcccchHhHHHHHHhcCCCCchhhHHHHHHhhhhhHHHHHHhhHHHhhhccCchH
Q 014481          191 LATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWES  270 (423)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw~~  270 (423)
                      ++.++. ...++++.++++|++.|++.+...+....++.|++|+++|++++++...+..+|.++++.+.+.+.+..|||+
T Consensus        95 ~~~~~~-~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~~~~~w~~  173 (426)
T PRK12307         95 VGTGLS-GLASGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFAEAYGWRA  173 (426)
T ss_pred             HHHHHH-HHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHHcccCCHHH
Confidence            988777 4667789999999999999999999999999999999999999999999999999999999999998899999


Q ss_pred             HHHHHHHHHHHHHHHHHhhccCCcCcCCCCCcchhhhhhhhhhhhhHHhhccccCCCcHHHhhhcHHHHHHHHHHH---H
Q 014481          271 VFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHF---C  347 (423)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---~  347 (423)
                      .|++.++..++........|++++....+...+.      +     ..+.........++++++++.++...+...   .
T Consensus       174 ~f~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~------~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (426)
T PRK12307        174 AFFVGLLPVLLVIYIRARAPESKEWEEAKLSGKG------K-----HSQSAWSVFSLSMKGLFNRAQFPLTLCVFIVLFS  242 (426)
T ss_pred             HHHHHHHHHHHHHHHHHHCCCChHHHHhhhhccc------c-----ccccchhhhhHHHHHHHhhchHHHHHHHHHHHHH
Confidence            9987544333322221122222111000000000      0     000000001124677888887765443322   2


Q ss_pred             HHHHHHHHHhhhhHHHHHhhCCChhhHHHHHHHHHHHHHHHHHHHHHHhHHhhhcCC
Q 014481          348 GSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGV  404 (423)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~r~~  404 (423)
                      .....+.+..++|.|+++ .|+++.+.+.+.+...++.++++++.|++.||+++|+.
T Consensus       243 ~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~  298 (426)
T PRK12307        243 IFGANWPIFGLLPTYLAG-EGFDTGVVSNLMTAAAFGTVLGNIVWGLCADRIGLKKT  298 (426)
T ss_pred             HHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHH
Confidence            233334467789999987 59999999999999999999999999999999998753

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=99.96  E-value=1.2e-27  Score=224.98  Aligned_cols=275  Identities=17%  Similarity=0.175  Sum_probs=212.6

Q ss_pred             HHHHHHHHHHhhhhhhhhhHHH-hhhhhCCCcchhhHHHHHHHHHHHhhhhhhhhHhhHhcCchHHHHHHHHHHHHHHHH
Q 014481          118 TTSLAFVICNMDKVNLSVAIIP-MSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALL  196 (423)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~  196 (423)
                      ..++++++.........+..|. +.+++|++..+.+++.+++.+++.+++++.|+++||+|||+.++++.++.+++.+++
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~~   84 (366)
T TIGR00886         5 FSWFGFFLSFSVWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWA   84 (366)
T ss_pred             HHHHHHHHHHHHHHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHH
Confidence            4666677777888889999995 899999999999999999999999999999999999999999999999999988777


Q ss_pred             HHhhh-HHHHHHHHHHHHHhhcccchHhHHHHHHhcCCCCchhhHHHHHHhhhhhHHHHHHhhHHHhhh----------c
Q 014481          197 PLLAG-FMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIE----------N  265 (423)
Q Consensus       197 ~~~~~-~~~~~~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~----------~  265 (423)
                      . ..+ +++.+++.|++.|++.+. .+...+++++++|+++|++++++...+.++|..+++.+++.+..          .
T Consensus        85 ~-~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~  162 (366)
T TIGR00886        85 G-LAVQSYSVLLLLRLFIGIAGGS-FASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAH  162 (366)
T ss_pred             H-HHhhhHHHHHHHHHHHHHhchh-hHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccccccc
Confidence            4 455 788999999999998654 56678999999999999999999998888888888888776654          2


Q ss_pred             cCchHHHH-HHHHHHHHH-HHHHHhhccCCcCcCCCCCcchhhhhhhhhhhhhHHhhccccCCCcHHHhhhcHHHHHHHH
Q 014481          266 LGWESVFY-IFGLLGIAW-FSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIY  343 (423)
Q Consensus       266 ~gw~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  343 (423)
                      .+||+.|+ +.+++..+. .+...+.+++++.+.++.+.+.+..  ...        .+.......++.+++|.++...+
T Consensus       163 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~--------~~~~~~~~~~~~~~~~~~~~~~~  232 (366)
T TIGR00886       163 LAWGWAFVIVPAGILLLPALLIFFVGADTPPGKPATGKLSFKGA--RWS--------VGTGALGDQLKVFRDRHTWILAL  232 (366)
T ss_pred             ccccchhHHHHHHHHHHHHHHHHHhcccCCcccccchhcccccc--ccc--------ccchhHHHHHHHHhccchhhHHH
Confidence            48999994 445554443 3333344443322111100000000  000        00000013467788899988888


Q ss_pred             HHHHHHHHHHHHHhhhhHHHHHhhCCChhhHHHHHHHHHHHHHHHHHHHHHHhHHhhhcCC
Q 014481          344 AHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGV  404 (423)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~r~~  404 (423)
                      ..++..........+.|.|+++.+|+++.+++.+..+..+++++++++.|++.||+++|+.
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~  293 (366)
T TIGR00886       233 LYSVTFGSFLGVSSIFAMFFKDQFGLSKVTAGAYASLGGLLGSLARPLGGAISDRLGGARK  293 (366)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhhccchHHHhhccchh
Confidence            8887777788888999999998899999999999999999999999999999999998754

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=99.96  E-value=1.6e-27  Score=230.11  Aligned_cols=288  Identities=16%  Similarity=0.244  Sum_probs=213.1

Q ss_pred             hHHHHHHHHHHHHHHHhhhhhhhhhHHHhhhhhCCCcchhhHHHHHHHHHHHhhhhhhhhHhhHhcCchHHHHHHHHHHH
Q 014481          112 RYKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSL  191 (423)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~  191 (423)
                      +|..+...++.....+++...+....|.+.++ |++..+.+++.+.+.+++.+++++.|+++||+|||++++++.++.++
T Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~-g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~~~i  105 (452)
T PRK11273         27 RWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQ-GFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAA  105 (452)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHc-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhHHHHHHHHHH
Confidence            45555555566666666666677788888888 99999999999999999999999999999999999999999999888


Q ss_pred             HHHHHHHhh---hHHHHHHHHHHHHHhhcccchHhHHHHHHhcCCCCchhhHHHHHHhhhhhHHH-HHHhhHHHhhhccC
Q 014481          192 ATALLPLLA---GFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSV-AGLLLAPPIIENLG  267 (423)
Q Consensus       192 ~~~~~~~~~---~~~~~~~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~-~g~~~~~~l~~~~g  267 (423)
                      +.++++...   .+++.+++.|++.|++.+...+.....+.+++|+++|++++++++.+..+|.. ++|+++..+....|
T Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~g  185 (452)
T PRK11273        106 VMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMAWFND  185 (452)
T ss_pred             HHHHHHhhhcccccHHHHHHHHHHHHHHHhccchHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcc
Confidence            887664332   35678889999999999988888888999999999999999999999999864 55655444444459


Q ss_pred             chHHHHHHHHHHHHH-HHHHHhhccCCcCcCCCCCcchhhhhhhhhhhhhHHhhccccCCCcHHHhhhcHHHHHHHHHHH
Q 014481          268 WESVFYIFGLLGIAW-FSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHF  346 (423)
Q Consensus       268 w~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  346 (423)
                      ||+.|++.+++.++. ++..++++++++....+..++.+. ...+.. ...++.+.+.++.-.+.+++++.+|...+..+
T Consensus       186 w~~~f~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  263 (452)
T PRK11273        186 WHAALYMPAFAAILVALFAFAMMRDTPQSCGLPPIEEYKN-DYPDDY-NEKHEQELTAKQIFMQYVLPNKLLWYIAIANV  263 (452)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHccCCHhhcCCCChhhhhh-cccccc-ccccCCCccHHHHHHHHHHcChHHHHHHHHHH
Confidence            999999988877665 444455555443211110000000 000000 00000000000000124678999999888888


Q ss_pred             HHHHHHHHHHhhhhHHHHHhhCCChhhHHHHHHHHHHHHHHHHHHHHHHhHHhhhc
Q 014481          347 CGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIAT  402 (423)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~r  402 (423)
                      +.....++...++|.|+++..|++..+++.+..+..++.+++.++.|+++||++++
T Consensus       264 ~~~~~~~~~~~~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~  319 (452)
T PRK11273        264 FVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRG  319 (452)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence            88888888899999999988899999999988899999999999999999999543

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.96  E-value=3e-28  Score=231.05  Aligned_cols=285  Identities=19%  Similarity=0.296  Sum_probs=230.5

Q ss_pred             HHHHHHHHHHHHHHHhhhhhhhhh-HHHhhhhhCCCcchhhHHHHHHHHHHHhhhhhhhhHhhHhcCchHHHHHHHHHHH
Q 014481          113 YKLIGTTSLAFVICNMDKVNLSVA-IIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSL  191 (423)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~  191 (423)
                      ..++..+++.++..+.+...++.. +..+.+|.+....+.+.+.+++.++++++.+++|.+.||++..+.+....+++++
T Consensus        44 l~i~~~~~~~y~~~~~d~~si~~a~l~g~~edl~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~~w~~  123 (495)
T KOG2533|consen   44 LFILPFLCYLYFHAYLDKSSIVNASLSGLKEDLKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVSGILWGL  123 (495)
T ss_pred             HHHHHHHHHHHHHHhcchhcchhHHHcCCccccchhhhhhhhHHHHHHHHHHHHHhhHHHHHHhCChHHHHHHHHHHHHH
Confidence            345556666667777776555543 4447799999999999999999999999999999999999988888888888888


Q ss_pred             HHHHHHHhhhHHHHHHHHHHHHHhhcccchHhHHHHHHhcCCCCchhhHHHHHHhhhhhHHHHHHhhHHHhh------hc
Q 014481          192 ATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPII------EN  265 (423)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~------~~  265 (423)
                      ..++.. ..++++.+++.|++.|+..+..+|....+++.|+.+++|+..+|++.+..++|.++|.+++..+.      ..
T Consensus       124 ~~~~~~-~~~s~~~~ialr~llGl~es~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~  202 (495)
T KOG2533|consen  124 FGFLTA-AVHSFPGLIALRFLLGLFESGGWPGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGL  202 (495)
T ss_pred             HHHHHH-HHhhhHHHHHHHHHHHHHhcccchHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCc
Confidence            776664 47888999999999999999999999999999999999999999999999999999999998863      34


Q ss_pred             cCchHHHHHHHHHHHHHHHHH-HhhccCCcCcCCCCCcchhhhhhhhhhhhhHHhhccccCCCcHHHhhhcHHHHHHHHH
Q 014481          266 LGWESVFYIFGLLGIAWFSGF-KILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYA  344 (423)
Q Consensus       266 ~gw~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  344 (423)
                      .||||.|++.+++.++..++. +++|+.+. +..-.+++++....++..........++.+...+++.+++|.+|.+++.
T Consensus       203 ~gW~~~FiI~G~i~~~~gi~~f~~lp~~P~-~~~fl~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~a~~dp~vw~~~l~  281 (495)
T KOG2533|consen  203 AGWRWLFIIEGVITLVLGIVVFFFLPDNPS-KAWFLTDEEKELVVERLRESPSGGIENKFKWKGFKEALKDPGVWPFSLC  281 (495)
T ss_pred             CCceeehhHHHHHHHHHHheEEEEecCChh-hccccchHHHHHHHHHHHhccCCCcccccCHHHHHHHHhchhHHHHHHH
Confidence            689999999999998875554 45555444 2233333332222111111111111122455667889999999999999


Q ss_pred             HHHHHHHHHHHHhhhhHHHHHhhCCChhhHHHHHHHHHHHHHHHHHHHHHHhHHh
Q 014481          345 HFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNL  399 (423)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~  399 (423)
                      .++.....+++.+|+|.|+++..|++..+++.+..+..++++++.+++|+++||+
T Consensus       282 ~~~~~lv~~~~~~~lpl~l~~~~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~  336 (495)
T KOG2533|consen  282 YFFLKLVNYGFSYWLPLYLKSNGGYSELQANLLSTPYDVGGIVGLILAGYLSDRL  336 (495)
T ss_pred             HHHHhhccccHHHHHHHHHHcCCCcChHHhccccchHHhhhHHHHHHHHHHHHHH
Confidence            9999999999999999999986679999999999999999999999999999995

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.96  E-value=2.3e-27  Score=223.71  Aligned_cols=259  Identities=18%  Similarity=0.221  Sum_probs=208.4

Q ss_pred             HHHhhhhhhhhhHHHhhhhhCCCcchhhHHHHHHHHHHHhhhhhhhhHhhHhcCchHHHHHHHHHHHHHHHHHHhhhHHH
Q 014481          125 ICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMP  204 (423)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~  204 (423)
                      +........++..|.+.+++|++..+.|++.+++.+++.+++++.|+++||+|||+++.++.++.+++.+++ ...++++
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~G~r~~~~~~~~~~~~~~~~~-~~~~~~~   92 (377)
T TIGR00890        14 FTSGYVYTWTLLAPPLGRYFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGLGFTFY-AIADSLA   92 (377)
T ss_pred             HHhhHHhhhhhHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHcCccchhHHhHHHHHHHHHHH-HHHHHHH
Confidence            333446677888999999999999999999999999999999999999999999999999999999988776 5677889


Q ss_pred             HHHHHHHHHHhhcccchHhHHHHHHhcCCCCchhhHHHHHHhhhhhHHHHHHhhHHHhhhccCchHHHHHHHHHHHHHHH
Q 014481          205 GLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFS  284 (423)
Q Consensus       205 ~~~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw~~~~~~~~~~~~~~~~  284 (423)
                      .++++|++.|++.+...+.....+.+++| ++|+++.++...+..+|..+++++.+.+.+..|||+.|++.+++.++..+
T Consensus        93 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~  171 (377)
T TIGR00890        93 ALYLTYGLASAGVGIAYGIALNTAVKWFP-DKRGLASGIIIGGYGLGSFILSPLITSVINLEGVPAAFIYMGIIFLLVIV  171 (377)
T ss_pred             HHHHHHHHHhHHHHHHHHhHHHHHHHHcC-cccHHHHHHHHHhcchhHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence            99999999999999888888888999987 68999999999999999988887877888888999999999988877655


Q ss_pred             HHHhhccCCcCcCCCCCcchhhhhhhhhhhhhHHhhccccCCCcHHHhhhcHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 014481          285 GFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLSWLPTYFS  364 (423)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  364 (423)
                      ..+++.++++++..+.+.+.                  ..+...+++.++++.++...+..++..........+.+.|.+
T Consensus       172 ~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (377)
T TIGR00890       172 LGAFLIGYPPGQLIKTNIEV------------------SVKDYTVWEMLRTPQFWVLYLSFFLNAVSGLLLIGLYKPYGQ  233 (377)
T ss_pred             HHHHheecCchhccccCccc------------------chhhhhHHHHHcCccHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence            54444332222111100000                  000112467788888888777777766666666677777775


Q ss_pred             HhhCCChhhHHHHHHHHHHHHHHHHHHHHHHhHHhhhcCC
Q 014481          365 EELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGV  404 (423)
Q Consensus       365 ~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~r~~  404 (423)
                      + +|.+..+.+.+.....++.++++++.|++.||++||+.
T Consensus       234 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~  272 (377)
T TIGR00890       234 S-LGLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKT  272 (377)
T ss_pred             H-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence            4 78998889999999999999999999999999998854

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.96  E-value=7.3e-27  Score=222.83  Aligned_cols=272  Identities=23%  Similarity=0.324  Sum_probs=218.8

Q ss_pred             hhHHHHHHHHHHHHHHHhhhhhhhhhHHHhhhhhCCCcchhhHHHHHHHHHHHhhhhhhhhHhhHhcCchHHHHHHHHHH
Q 014481          111 QRYKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWS  190 (423)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~  190 (423)
                      ++|..+...++..++..++....+...|.+.+++|.++.+.+++.+.+.++..++.++.|+++||+|||+++.++.++.+
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~   91 (406)
T PRK11551         12 RLALTIGLCFLVALLEGLDLQSAGVAAPRMAQEFGLDVAQMGWAFSAGILGLLPGALLGGRLADRIGRKRILIVSVALFG   91 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHH
Confidence            46777888888888999999999999999999999999999999999999999999999999999999999999998888


Q ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHhhcccchHhHHHHHHhcCCCCchhhHHHHHHhhhhhHHHHHHhhHHHhhhccCchH
Q 014481          191 LATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWES  270 (423)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw~~  270 (423)
                      ++.+++ ...++++.+++.|++.|++.+...+...+++.|++|+++|++++++.+.+..+|..+++.+++.+.+..+|++
T Consensus        92 ~~~~~~-~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  170 (406)
T PRK11551         92 LFSLAT-AQAWDFPSLLVARLLTGVGLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLAAGDAAWRH  170 (406)
T ss_pred             HHHHHH-HHhccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCHHH
Confidence            887666 4567788999999999999999999999999999999999999999999999999999999998888889999


Q ss_pred             HHHHHHHHHHHHHH-HHHhhccCCcCcCCCCCcchhhhhhhhhhhhhHHhhccccCCCcHHHhhh---cHHHHHHHHHHH
Q 014481          271 VFYIFGLLGIAWFS-GFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFR---SKAVWAMIYAHF  346 (423)
Q Consensus       271 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~~~  346 (423)
                      .|++.+++.++..+ ...+++|+++....+..+++.     +.               ..+..++   .+..+.+.+..+
T Consensus       171 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-----~~---------------~~~~~~~~~~~~~~~~~~~~~~  230 (406)
T PRK11551        171 IFYVGGVGPLLLVPLLMRWLPESRAFAQAAGAGKQR-----AP---------------VLRALFGEGRATATLLLWISYF  230 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCChhHHhccCcchhh-----hh---------------hHHHHhhhhhhhHHHHHHHHHH
Confidence            99998876655443 334456544322111000000     00               0111111   223333444445


Q ss_pred             HHHHHHHHHHhhhhHHHHHhhCCChhhHHHHHHHHHHHHHHHHHHHHHHhHHhhhcCC
Q 014481          347 CGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGV  404 (423)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~r~~  404 (423)
                      +.....+....|+|.|+++ .|+++.+.+.+.....++.++++++.|++.||+++|+.
T Consensus       231 ~~~~~~~~~~~~~p~~~~~-~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~  287 (406)
T PRK11551        231 FTLIVLYFLLNWLPSLLVG-QGLSRSQAGLVQIAFNIGGALGSLLIGALMDRLRPRRV  287 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHh-CCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence            5555666777889999986 69999999999999999999999999999999998744

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=99.96  E-value=1.7e-29  Score=228.20  Aligned_cols=282  Identities=17%  Similarity=0.205  Sum_probs=230.8

Q ss_pred             hHHHHHHHHHHHHHHHhhhhhhhhhHHHhhhhhCCCcchhhHHHHHHHHHHHhhhhhhhhHhhHhcCchHHHHHHHHHHH
Q 014481          112 RYKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSL  191 (423)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~  191 (423)
                      .++.+.++++..+++..+.+.+...++.+++++|++++..|++.+.+.+.+.+++|++|+++|||.||+++.+|..+|.+
T Consensus        31 ~~~~l~il~~vnlmny~Dr~~iagv~~~v~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~~iW~~  110 (493)
T KOG1330|consen   31 PTLTLVILCLVNLMNYADRYTIAGVLKEVQTYFNISDSELGLLQTVFIVVFMIASPLFGYLADRYNRKRVIAVGIFIWTL  110 (493)
T ss_pred             chHHHHHHHHHHHHHHhhhhhhhhhhHHHHHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhcCcceEEeeHHHHHHH
Confidence            45778889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhhHHHHHHHHHHHHHhhcccchHhHHHHHHhcCCCCchhhHHHHHHhhhhhHHHHHHhhHHHhhhccC-chH
Q 014481          192 ATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLG-WES  270 (423)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g-w~~  270 (423)
                      +.+..+ +++.+|++.++|.+.|+|.+...+++.++++|.+|..+|++++++++.+..+|..+|.+++..+.+..+ |||
T Consensus       111 Av~~~~-fs~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~~Wr~  189 (493)
T KOG1330|consen  111 AVFASG-FSNHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLTFWWRW  189 (493)
T ss_pred             HHHHHH-HHHHHHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCccceEE
Confidence            998885 558889999999999999999999999999999999999999999999999999999999999988766 999


Q ss_pred             HHHHHHHHHHHHHHHHHhhccCCcCcCCCCCcchhhhhhhhhhhhhHHhhccccCCCcHHHhhhcHHHHHHHHHHHHHHH
Q 014481          271 VFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSW  350 (423)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  350 (423)
                      .|++.+++.++++++.+++.++|++...++.+.+...  ..         .......+.+.+.+++.+....+......+
T Consensus       190 af~~~avl~vi~~~L~~~f~~eP~rga~~~~~~~~~~--~~---------~~ts~~kDl~~l~~~~v~v~~sl~~~a~~f  258 (493)
T KOG1330|consen  190 AFRGSAVLGVIVGLLVFLFVREPERGARDEVDGENKM--VK---------PFTSVWKDLKVLAKIKVFVLSSLGIIAAQF  258 (493)
T ss_pred             EEEeehHHHHHHHHHHHhhccCcccccccccccCCcC--CC---------CccchHHHHHHHHccCceeeehHHHHHHHH
Confidence            9999999998876665555444433222211111100  00         000111124556677888777888888888


Q ss_pred             HHHHHHhhhhHHHHHh---hCCChhhHHHHHHHHHHHHHHHHHHHHHHhHHhhhcCCc
Q 014481          351 GHYTCLSWLPTYFSEE---LSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVE  405 (423)
Q Consensus       351 ~~~~~~~~~~~~~~~~---~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~r~~~  405 (423)
                      ....+..|.|.+....   .|.+..+..++..+..+++.+|.+++|.++||+.++..+
T Consensus       259 v~Gs~sww~p~~~~~~~~~~~~~~~~~~ifg~vt~~~G~lGvl~Ggiisd~~~~~~~~  316 (493)
T KOG1330|consen  259 VIGSLSWWAPAFIYYSYELIGFDHNATLIFGGVTCAGGSLGVLFGGIISDKLSRIFPN  316 (493)
T ss_pred             hccccchhhhhHHHHHHHHhCCccccchhhhhHHHhhchhhheehHHHHHHHHHhccc
Confidence            8778777887766533   356666777788889999999999999999998775443

>TIGR00805 oat sodium-independent organic anion transporter

Probab=99.96  E-value=1.1e-28  Score=244.69  Aligned_cols=286  Identities=17%  Similarity=0.165  Sum_probs=224.0

Q ss_pred             HHHHHHHHHHHhhhhhhhhhHHHhhhhhCCCcchhhHHHHHHHHHHHhhhhhhhhHhhHhcCchHHHHHHHHHHHHHHHH
Q 014481          117 GTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALL  196 (423)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~  196 (423)
                      +.+.+..+...+........++.+.++|+++..+.|++.+.+.++++++.++.|++.||+|||+++.++.++++++.+++
T Consensus        36 ~~~~~~~~~~~~~~g~~~~~l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~  115 (633)
T TIGR00805        36 LLLTCAQLQGLLYNGLVNSSLTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFLL  115 (633)
T ss_pred             HHHHHHHHHHHHHHHHHHhhchhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHHH
Confidence            44455666777777888889999999999999999999999999999999999999999999999999999999999887


Q ss_pred             HHhh-------------------------------------------------h-HHHHHHHHHHHHHhhcccchHhHHH
Q 014481          197 PLLA-------------------------------------------------G-FMPGLVLSRVLVGIGEGVSPSAATD  226 (423)
Q Consensus       197 ~~~~-------------------------------------------------~-~~~~~~~~~~l~G~~~~~~~~~~~~  226 (423)
                      +...                                                 . .+..++++|+++|+|.+..++...+
T Consensus       116 alphf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~  195 (633)
T TIGR00805       116 SLPHFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGIS  195 (633)
T ss_pred             hChHHhcCCccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCch
Confidence            4321                                                 0 2456789999999999999999999


Q ss_pred             HHHhcCCCCchhhHHHHHHhhhhhHHHHHHhhHHHhhhcc----------------------CchHHHHHHHHHHHHHHH
Q 014481          227 LIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENL----------------------GWESVFYIFGLLGIAWFS  284 (423)
Q Consensus       227 ~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~----------------------gw~~~~~~~~~~~~~~~~  284 (423)
                      ++.|++|+++|++++++++.+..+|.++|+++++++.+.+                      +|+..|++.+++.++..+
T Consensus       196 ~i~d~~~~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~~l~~v  275 (633)
T TIGR00805       196 YIDDFAKSKNSPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVALLTSI  275 (633)
T ss_pred             hhhccCCccccHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999988642                      267778888888777666


Q ss_pred             HHHhhccCCcCcCCCCCcc-hhhhhhhhhhhhhHHh--hccccCCCcHHHhhhcHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 014481          285 GFKILQEGETSNGATLAPR-SNYINMKKSLSASLEE--MGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLSWLPT  361 (423)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  361 (423)
                      .++++|++.+......+.+ .+.....+.......+  .........++.+++||.++...+..++.....+++.+|+|.
T Consensus       276 ~l~~~p~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~n~~f~~~~l~~~~~~~~~~~~~~~lP~  355 (633)
T TIGR00805       276 PFFFFPKALPKEGKRVNVDVHETEKLEKSEDKSRKKNSDITKDFPKIIKRLLCNPIYMLVILAQVIDSLAFNGYITFLPK  355 (633)
T ss_pred             HHHhCccccCCcccccchhhhhhhcccccccccchhhhhhHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6667776544321111000 0000000000000000  000000123568899999999999999999999999999999


Q ss_pred             HHHHhhCCChhhHHHHHHHHHH-HHHHHHHHHHHHhHHhhhc
Q 014481          362 YFSEELSLNLTEAAWVSILPPL-ASVLVTSIAAQFADNLIAT  402 (423)
Q Consensus       362 ~~~~~~g~s~~~~~~~~~~~~~-~~~~~~~~~g~l~dr~~~r  402 (423)
                      |+++++|+++.+++++..+..+ +.+++.+++|+++||++.+
T Consensus       356 yl~~~~g~s~~~ag~l~~~~~i~~~~vG~~l~G~l~~r~~~~  397 (633)
T TIGR00805       356 YLENQYGISSAEANFLIGVVNLPAAGLGYLIGGFIMKKFKLN  397 (633)
T ss_pred             HHHHHcCCcHHHHHHHhhhhhhhHHHHHHhhhhheeeeeccc
Confidence            9999999999999999887776 6688999999999999855

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>PRK15075 citrate-proton symporter; Provisional

Probab=99.96  E-value=9.2e-27  Score=223.64  Aligned_cols=271  Identities=14%  Similarity=0.107  Sum_probs=202.0

Q ss_pred             hHHHHHHHHHHHHHHHhhhhhhhhhHHHhhhhhCCCcchhhHHH-HHH-----HHHHHhhhhhhhhHhhHhcCchHHHHH
Q 014481          112 RYKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQ-SSF-----FWGYALSQLPGGWLAKIFGGRKVLQTG  185 (423)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~-~~~-----~~~~~~~~~~~g~l~dr~G~r~~~~~~  185 (423)
                      |++....++++.++.+++...++...|.+.++++.++.+.+... +..     .++..+++++.|+++||+|||+.++++
T Consensus        13 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~   92 (434)
T PRK15075         13 KARAILRVTSGNFLEMFDFFLFGFYATAIAKTFFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRVGRRKGLIVT   92 (434)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhchHHHHHHH
Confidence            55678888999999999999999999999999999887765433 322     222346889999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhhHHH--------HHHHHHHHHHhhcccchHhHHHHHHhcCCCCchhhHHHHHHhhhhhHHHHHHh
Q 014481          186 VLIWSLATALLPLLAGFMP--------GLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLL  257 (423)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~--------~~~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~  257 (423)
                      .++++++.++++ ++++++        .++++|+++|++.+...+....+++|++|+++|++++++...+.++|..+++.
T Consensus        93 ~~~~~~~~~l~~-~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~~~~~g~~~g~~  171 (434)
T PRK15075         93 LSIMASGTLLIA-FVPGYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGRKGFYTSWQSASQQVAVVFAAL  171 (434)
T ss_pred             HHHHHHHHHHHH-hCCcHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCcccchHHHHHHHHHHHHHHHHHHH
Confidence            999999988875 455544        46889999999999999999999999999999999999999988888888888


Q ss_pred             hHHHhh--------hccCchHHHHHHHHHHHHHHHHHHhhccCCcCcCCCCCcchhhhhhhhhhhhhHHhhccccCCCcH
Q 014481          258 LAPPII--------ENLGWESVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPW  329 (423)
Q Consensus       258 ~~~~l~--------~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  329 (423)
                      +++.+.        +.+|||++|++.++...+.    ++.++..++...    ....   .         . +......+
T Consensus       172 ~g~~l~~~~~~~~~~~~gWr~~f~~~~~~~~~~----~~~~~~~~e~~~----~~~~---~---------~-~~~~~~~~  230 (434)
T PRK15075        172 LGYLLNQWLSPAQMAEWGWRIPFLIGCLIVPFI----FLIRRSLEETEE----FLAR---K---------H-RPSMREIF  230 (434)
T ss_pred             HHHHHHHhCCHHHHhccchHHHHHHHHHHHHHH----HHHHHhcCCCHH----HHHh---h---------h-ccccccHH
Confidence            777663        4679999998754432221    122211111000    0000   0         0 00001113


Q ss_pred             HHhhhcHHHHHH-HHHHHHHHHHHHHHHhhhhHHHHHhhCCChhhHHHHHHHHHHHHHHHHHHHHHHhHHhhhcCC
Q 014481          330 KAIFRSKAVWAM-IYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGV  404 (423)
Q Consensus       330 ~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~r~~  404 (423)
                      +...+++..+.. ++..++.....+....|.|.|+++.+|++..+++++..+..++++++.++.|+++||++||+.
T Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~  306 (434)
T PRK15075        231 RSLAANWRIVLAGMLMVAMTTVSFYLITVYTPTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALSDRIGRRPV  306 (434)
T ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHH
Confidence            444555555544 333444556677788999999998889999999988889999999999999999999998854

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.96  E-value=6.3e-27  Score=219.80  Aligned_cols=271  Identities=15%  Similarity=0.086  Sum_probs=219.0

Q ss_pred             HHHHHHHHHhhhhhhhhhHHHhhhhhCCCcchhhHHHHHHHHHHHhhhhhhhhHhhHhcCchHHHHHHHHHHHHHHHHHH
Q 014481          119 TSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPL  198 (423)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~  198 (423)
                      +..+.++..+......+.+|.+..+++.+..+++++.+++.++..++++++|+++||+|||++++++.++.+++.++...
T Consensus         4 l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~   83 (365)
T TIGR00900         4 LFAAQLISLIGTAITQVALPLYVLAGTGSASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLPF   83 (365)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHHH
Confidence            44566677777888888889999999999999999999999999999999999999999999999998888887766643


Q ss_pred             hh----hHHHHHHHHHHHHHhhcccchHhHHHHHHhcCCCCchhhHHHHHHhhhhhHHHHHHhhHHHhhhccCchHHHHH
Q 014481          199 LA----GFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYI  274 (423)
Q Consensus       199 ~~----~~~~~~~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw~~~~~~  274 (423)
                      ..    .+++.++++|++.|++.+...+...+++.|++|+++|++++++.+.+..+|.++||.+++.+.+..|||+.|++
T Consensus        84 ~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~  163 (365)
T TIGR00900        84 VALLGGLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYATLGIKWAIWV  163 (365)
T ss_pred             HHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence            33    17789999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             HHHHHHHHHHHHHhhccCCcCcCCCCCcchhhhhhhhhhhhhHHhhccccCCCcHHHhhhcHHHHHHHHHHHHHHHHHHH
Q 014481          275 FGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYT  354 (423)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  354 (423)
                      .++..++..+..+.++.+++++.++.+.+++.      ..    +.     ...++.++++|.++...+..++.......
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~----~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (365)
T TIGR00900       164 DAVGFAISALLIVSVRIPELAASEIQALSNAV------LR----DT-----REGIKFVLKNPLLRTLLLLALLFNLVFAP  228 (365)
T ss_pred             HHHHHHHHHHHHHhcccccCCCccccccchhH------HH----HH-----HhHHHHHHcCcHHHHHHHHHHHHHHHHHH
Confidence            88776665544444433222111110000000      00    00     01256778899998888877777777766


Q ss_pred             HH-hhhhHHHHHhhCCChhhHHHHHHHHHHHHHHHHHHHHHHhHHhhhcCC
Q 014481          355 CL-SWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGV  404 (423)
Q Consensus       355 ~~-~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~r~~  404 (423)
                      .. .+.|.|.++.+|.+..+.+.+.....++.+++.++.+++.||+++|+.
T Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  279 (365)
T TIGR00900       229 AIVALFPYVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYFKRMAL  279 (365)
T ss_pred             HHHHHhHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHH
Confidence            66 788999987789999999999999999999999999999999987743

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=99.96  E-value=4.5e-27  Score=226.08  Aligned_cols=289  Identities=16%  Similarity=0.234  Sum_probs=217.6

Q ss_pred             hHHHHHHHHHHHHHHHhhhhhhhhhHHHhhhhhCCCcchhhHHHHHHHHHHHhhhhhhhhHhhHhcCchHHHHHHHHHHH
Q 014481          112 RYKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSL  191 (423)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~  191 (423)
                      ++..+..+.+.+...+.....+....|.+.+ +|++..+.+++.+++.++..+++++.|+++||+|||+.++++.++.++
T Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~~  103 (438)
T TIGR00712        25 RWQVFLGIFFGYAAYYLVRKNFALAMPYLVE-QGFSKGELGFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSAA  103 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHhccHHhhhHHHHH-cCCCHhHhHHHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHHHH
Confidence            3555666666777777777777777887775 599999999999999999999999999999999999999999888888


Q ss_pred             HHHHHHHh---hhHHHHHHHHHHHHHhhcccchHhHHHHHHhcCCCCchhhHHHHHHhhhhhHHHHHHhhHHHhhh-ccC
Q 014481          192 ATALLPLL---AGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIE-NLG  267 (423)
Q Consensus       192 ~~~~~~~~---~~~~~~~~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~-~~g  267 (423)
                      +.++....   .++++.+++.|++.|++.+..++.....+.+++|+++|++++++++.+..+|..+++.+.+.+.+ ..+
T Consensus       104 ~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~  183 (438)
T TIGR00712       104 VMLLMGFVPWATSSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAWFND  183 (438)
T ss_pred             HHHHHhccccccchHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHHHhhh
Confidence            87665332   24567788899999999999999899999999999999999999999999999999988776544 468


Q ss_pred             chHHHHHHHHHHHHHH-HHHHhhccCCcCcCCCCCcchhhhhhhhhhhhhHHhhccccCCCcHHHhhhcHHHHHHHHHHH
Q 014481          268 WESVFYIFGLLGIAWF-SGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHF  346 (423)
Q Consensus       268 w~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  346 (423)
                      ||+.|++.+++.++.. +..++++|+++....++.++.+. +..+.... ..+.+.+.++...+.+++++.+|...+..+
T Consensus       184 w~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (438)
T TIGR00712       184 WHAALYFPAICAIIVALFAFAMMRDTPQSCGLPPIEEYRN-DYPDDYNE-KAEQELTAKEIFMQYVLPNKLLWYIAIANV  261 (438)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhccCCHHhcCCCCchhccc-cccccccc-ccccccchHHHHHHHHccCchHHHHHHHHH
Confidence            9999999888877654 44445555433211110000000 00000000 000000000111234688999999888888


Q ss_pred             HHHHHHHHHHhhhhHHHHHhhCCChhhHHHHHHHHHHHHHHHHHHHHHHhHHhhhcC
Q 014481          347 CGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATG  403 (423)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~r~  403 (423)
                      +.....++..+++|.|+++..|+++.++++...+..++++++.+++|++.||+++++
T Consensus       262 ~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~  318 (438)
T TIGR00712       262 FVYLLRYGVLDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFKGN  318 (438)
T ss_pred             HHHHHHHHHHHhHHHHHHHccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCc
Confidence            877788888899999999888999999999999999999999999999999997553

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>PRK10133 L-fucose transporter; Provisional

Probab=99.96  E-value=3.2e-26  Score=219.16  Aligned_cols=274  Identities=15%  Similarity=0.167  Sum_probs=212.9

Q ss_pred             HHHHHHHHHHHHHHHhhhhhhhhhHHHhhhhhCCCcchhhHHHHHHHHHHHhhhhhhhhHhhHhcCchHHHHHHHHHHHH
Q 014481          113 YKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLA  192 (423)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~  192 (423)
                      ...+..+.+.+++..+.........|.+++++|+++.+.|+..+.+.+++.+++++.|+++||+|||+++.++.++++++
T Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~~~~~~  104 (438)
T PRK10133         25 IIPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALG  104 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH
Confidence            34556677777888888889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHH--HhhhHHHHHHHHHHHHHhhcccchHhHHHHHHhcCCCCchhhHHHHHHhhhhhHHHHHHhhHHHhhh------
Q 014481          193 TALLP--LLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIE------  264 (423)
Q Consensus       193 ~~~~~--~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~------  264 (423)
                      .+++.  ..+++++.++++|+++|+|.+...+..+.++.++.++++|+..+++.+..+.+|..+|+.+++.+..      
T Consensus       105 ~~l~~~~~~a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~l~~~~~~~~  184 (438)
T PRK10133        105 AALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQ  184 (438)
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccc
Confidence            87652  3567889999999999999999999999999998777777778999999999999999999876541      


Q ss_pred             ------------c--------cCchHHHHHHHHHHHHHHHHHHhhccCCcCcCCCCCcchhhhhhhhhhhhhHHhhcccc
Q 014481          265 ------------N--------LGWESVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESL  324 (423)
Q Consensus       265 ------------~--------~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (423)
                                  .        .+||++|+....+..+.+++..+.+.++.+.++ ..+ ++.                ..
T Consensus       185 ~~~~~~~l~~~~~~~w~~~~~~~w~~~f~~~~~v~~~~~~~~~~~~~p~~~~~~-~~~-~~~----------------~~  246 (438)
T PRK10133        185 SQDVLDKMTPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDN-HSD-AKQ----------------GS  246 (438)
T ss_pred             chhhhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccc-ccc-ccc----------------cc
Confidence                        0        246666654443332222222222111111000 000 000                00


Q ss_pred             CCCcHHHhhhcHHHHHHHHHHHHHHHHHHHHHhhhhHHH-HHhhCCChhhHHHHHHHHHHHHHHHHHHHHHHhHHhhhcC
Q 014481          325 KDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLSWLPTYF-SEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATG  403 (423)
Q Consensus       325 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~r~  403 (423)
                      ....+++++++|.++...+..++....+.....|++.|+ ++.+|+++.++++......++.++|+++++++.||+++|+
T Consensus       247 ~~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~g~~~  326 (438)
T PRK10133        247 FSASLSRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHK  326 (438)
T ss_pred             hhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHH
Confidence            011246788999988887777888888888888999885 5568999999999999999999999999999999999885


Q ss_pred             C
Q 014481          404 V  404 (423)
Q Consensus       404 ~  404 (423)
                      .
T Consensus       327 ~  327 (438)
T PRK10133        327 V  327 (438)
T ss_pred             H
Confidence            4

>PRK10504 putative transporter; Provisional

Probab=99.96  E-value=3.4e-26  Score=222.39  Aligned_cols=288  Identities=21%  Similarity=0.268  Sum_probs=226.3

Q ss_pred             HHHHHHHHHHHHHHhhhhhhhhhHHHhhhhhCCCcchhhHHHHHHHHHHHhhhhhhhhHhhHhcCchHHHHHHHHHHHHH
Q 014481          114 KLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLAT  193 (423)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~  193 (423)
                      +.++.++++.++..++.....+.+|.+.+++|.+..+.+++.+.+.++..++.+++|+++||+|||++++.+.++.+++.
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~   89 (471)
T PRK10504         10 WQLWIVAFGFFMQSLDTTIVNTALPSMAQSLGESPLHMHMVIVSYVLTVAVMLPASGWLADRVGVRNIFFTAIVLFTLGS   89 (471)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHH
Confidence            34556777788888888889999999999999999999999999999999999999999999999999999988888887


Q ss_pred             HHHHHhhhHHHHHHHHHHHHHhhcccchHhHHHHHHhcCCCCchhhHHHHHHhhhhhHHHHHHhhHHHhhhccCchHHHH
Q 014481          194 ALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFY  273 (423)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw~~~~~  273 (423)
                      +++ ...++++.+++.|+++|++.+...+...+++.+++|+++|++++++.....++|..+||.+++.+.+..|||+.|+
T Consensus        90 ~~~-~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~~gw~~~f~  168 (471)
T PRK10504         90 LFC-ALSGTLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEYASWHWIFL  168 (471)
T ss_pred             HHH-HHhCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhccHHHHHH
Confidence            766 4567778899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhccCCcCcCCCCCcchhhh-------------hhhhh--hh-----------------hhHHhhc
Q 014481          274 IFGLLGIAWFSGFKILQEGETSNGATLAPRSNYI-------------NMKKS--LS-----------------ASLEEMG  321 (423)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~--~~-----------------~~~~~~~  321 (423)
                      +.....++..+......++.+.... +.+.....             ...+.  ..                 ...++..
T Consensus       169 ~~~~~~~l~~~~~~~~~~~~~~~~~-r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (471)
T PRK10504        169 INIPVGIIGAIATLMLMPNYTMQTR-RFDLSGFLLLAVGMATLTLALDGSKGLGLSPLAIAGLVAVGVVALLLYLLHARN  247 (471)
T ss_pred             HHHHHHHHHHHHHHHhCCCccccCC-CCChHHHHHHHHHHHHHHHHHhcCCcCCcchHHHHHHHHHHHHHHHHHHHHHhc
Confidence            9887766554444433222211111 11100000             00000  00                 0001111


Q ss_pred             cccCCCcHHHhhhcHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhhCCChhhHHHHHHHHHHHHHHHHHHHHHHhHHhhh
Q 014481          322 ESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIA  401 (423)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~  401 (423)
                      ...+..+. ++++||.++...+..++..........+.|.|++..+|.++.+++++.....++.+++.++.+++.||+++
T Consensus       248 ~~~~~~~~-~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~  326 (471)
T PRK10504        248 NNRALFSL-KLFRTRTFSLGLAGSFAGRIGSGMLPFMTPVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNRFGY  326 (471)
T ss_pred             CCCCccCH-HHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc
Confidence            11122233 57899999988888888888877777889999987789999999999999999999999999999999998


Q ss_pred             cCC
Q 014481          402 TGV  404 (423)
Q Consensus       402 r~~  404 (423)
                      |+.
T Consensus       327 ~~~  329 (471)
T PRK10504        327 RRV  329 (471)
T ss_pred             hHH
Confidence            754

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=99.96  E-value=3.3e-26  Score=217.23  Aligned_cols=266  Identities=17%  Similarity=0.169  Sum_probs=215.2

Q ss_pred             HHHHHHHHHHHHhhhhhhhhhHHHhhhhhCCCcchhhHHHHHHHHHHHhhhhhhhhHhhHhcCchHHHHHHHHHHHHHHH
Q 014481          116 IGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATAL  195 (423)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~  195 (423)
                      +.+..+..+....+.....+.+|.+.+++|.+..+.++..+.+.++..+++++.|+++||+|||+.++++.++.+++.++
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~   84 (392)
T PRK10473          5 LLCSFALVLLYPAGIDMYLVGLPRIAADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLL   84 (392)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHH
Confidence            34455555566666677778899999999999999999999999999999999999999999999999999998888877


Q ss_pred             HHHhhhHHHHHHHHHHHHHhhcccchHhHHHHHHhcCCCCchhhHHHHHHhhhhhHHHHHHhhHHHhhhccCchHHHHHH
Q 014481          196 LPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIF  275 (423)
Q Consensus       196 ~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw~~~~~~~  275 (423)
                      + ...++++.+++.|++.|++.+...+...+++.|++|+++|++++++.+....+|..++|.+++.+.+..||++.|++.
T Consensus        85 ~-~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~g~~~~~~~~  163 (392)
T PRK10473         85 C-SLAETSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLKFPWQSLFYTM  163 (392)
T ss_pred             H-HHhCcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHHHHHH
Confidence            6 456777888999999999999989999999999999999999999999999999999999999988888999999998


Q ss_pred             HHHHHHHHHH-HHhhccCCcCcCCCCCcchhhhhhhhhhhhhHHhhccccCCCcHHHhhhcHHHHHHHHHHHHHHHHHHH
Q 014481          276 GLLGIAWFSG-FKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYT  354 (423)
Q Consensus       276 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  354 (423)
                      +++.++..+. .+.++|+++.+..  ++..    .                ....++.++++.++...+...+.......
T Consensus       164 ~~~~~i~~~~~~~~~~~~~~~~~~--~~~~----~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (392)
T PRK10473        164 AAMGILVLLLSLFILKETRPARAP--AASS----K----------------PRENSESLLNRFFLSRLVITTLSVTVILT  221 (392)
T ss_pred             HHHHHHHHHHHHHHcCCCCCcccC--Cccc----h----------------HHHHHHHHhCHHHHHHHHHHHHHHHHHHH
Confidence            8887665444 3444544322110  0000    0                00124667888877666655555555556


Q ss_pred             HHhhhhHHHHHhhCCChhhHHHHHHHHHHHHHHHHHHHHHHhHHhhhcCC
Q 014481          355 CLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGV  404 (423)
Q Consensus       355 ~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~r~~  404 (423)
                      +..+.|.++++.+|+++.+.+.+....+++.+++.++.+++.||+++|+.
T Consensus       222 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r~g~~~~  271 (392)
T PRK10473        222 FVNTSPVLLMEQMGFSRGEYAIIMALTAGVSMTVSFSTPFALGIFKPRTL  271 (392)
T ss_pred             HHHhCHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHH
Confidence            66777888888889999999999999999999999999999999998854

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=99.95  E-value=2.3e-26  Score=217.17  Aligned_cols=257  Identities=20%  Similarity=0.279  Sum_probs=214.0

Q ss_pred             hhhhhhhhhHHHhhhhhCCCcchhhHHHHHHHHHHHhhhhhhhhHhhHhcCchHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 014481          128 MDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLV  207 (423)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~  207 (423)
                      +...++.+.+|.+.+++|+++.+.+++.+++.++..++.+++|+++||+|||+++..+.++.+++.+++ ...++++.++
T Consensus         5 ~~~~~~~p~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~-~~~~~~~~~~   83 (377)
T PRK11102          5 LAIDMYLPALPVIAADFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVAC-ALAQTIDQLI   83 (377)
T ss_pred             hHHHHHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHH-HHHccHHHHH
Confidence            345667788999999999999999999999999999999999999999999999999999988888777 4567778899


Q ss_pred             HHHHHHHhhcccchHhHHHHHHhcCCCCchhhHHHHHHhhhhhHHHHHHhhHHHhhhccCchHHHHHHHHHHHHHHHH-H
Q 014481          208 LSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFSG-F  286 (423)
Q Consensus       208 ~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw~~~~~~~~~~~~~~~~~-~  286 (423)
                      ++|++.|++.+...+...+++.+++|+++|++++++.+....+|..++|.+++.+.+..|||+.|++.+++.++..+. .
T Consensus        84 ~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  163 (377)
T PRK11102         84 YMRFLHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFSWHAIFWVLALAAILAAALVF  163 (377)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999899999999988887665444 3


Q ss_pred             HhhccCCcCcCCCCCcchhhhhhhhhhhhhHHhhccccCCCcHHHhhhcHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHh
Q 014481          287 KILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEE  366 (423)
Q Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  366 (423)
                      ++++|++++++++. .+  .   ++.             ..++++.++++.++...+..++...+.+....+.|.++.+.
T Consensus       164 ~~~~~~~~~~~~~~-~~--~---~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  224 (377)
T PRK11102        164 FFIPETLPKERRQP-FH--L---RTT-------------IRNFASLFRHKRVLGYMLASGFSFAGMFSFLTAGPFVYIEL  224 (377)
T ss_pred             HhCCccCcccccCC-CC--h---HHH-------------HHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHcCHHHHHHH
Confidence            44555432211100 00  0   000             01245778889888877777777777777778888888888


Q ss_pred             hCCChhhHHHHHHHHHHHHHHHHHHHHHHhHHhhhcCC
Q 014481          367 LSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGV  404 (423)
Q Consensus       367 ~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~r~~  404 (423)
                      +|+++.+.+.+..+..++.+++.++.+++.||+++|+.
T Consensus       225 ~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~  262 (377)
T PRK11102        225 NGVSPQNFGYYFALNIVFLFVMTIINSRFVRRVGALNM  262 (377)
T ss_pred             hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHH
Confidence            89999999999999999999999999999999998854

>TIGR00897 2A0118 polyol permease family

Probab=99.95  E-value=3.8e-26  Score=217.24  Aligned_cols=273  Identities=15%  Similarity=0.130  Sum_probs=209.0

Q ss_pred             HHHHHHHHHHHHHHhhhhhhhhhHHHhhhhhCCCcchhhHHHHHHHHHHHhhhhhhhhHhhHhcCchHHHHHHHHHHHHH
Q 014481          114 KLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLAT  193 (423)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~  193 (423)
                      +.+....++.++.........+.++.+.+++|.++.+.|++.+.+.++..++.++.|++.||+|||+++..+.++.+++.
T Consensus        13 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~~~~~~~   92 (402)
T TIGR00897        13 LNLLWGYIGVVVFMTGDGLEQGWLSPFLKALGLSPQQSASAFTLYGIAAAISAWISGVVAEIIGPLKTMMIGLLLWCVGH   92 (402)
T ss_pred             chhhHHHHHHHHHHHhhhhHHHhHHHHHHHhCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHH
Confidence            34445555555555555555566777778999999999999999999999999999999999999999999999888876


Q ss_pred             HHHHH--h-hhHHHHHHHHHHHHHhhcccchHhHHHHHHhcCCCCchhhHHHHHHhhhhhHH-HHHHhhHHHhhhccCch
Q 014481          194 ALLPL--L-AGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGS-VAGLLLAPPIIENLGWE  269 (423)
Q Consensus       194 ~~~~~--~-~~~~~~~~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~-~~g~~~~~~l~~~~gw~  269 (423)
                      +++..  . .++++.+++.|++.|++.+...+...+.+.+++|+++|++++|+.+.+.++|. ++||++++.+.+..||+
T Consensus        93 ~~~~~~~~~~~~~~~l~~~~~i~G~g~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~~g~~  172 (402)
T TIGR00897        93 AAFIVFGLGHANYPLILLFYGIRGLGYPLFAYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAIPAFGEM  172 (402)
T ss_pred             HHHHHHhccCccHHHHHHHHHHHHcchHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchH
Confidence            54421  2 34677888999999999888778888889999999999999999999999996 68999999999888987


Q ss_pred             HHHHHHHHHHHHHHHHHHhhccCCcCcCCCCCcchhhhhhhhhhhhhHHhhccccCCCcHHHhhhcHHHHHHHHHHHHHH
Q 014481          270 SVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGS  349 (423)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  349 (423)
                      ..+|......++..+..+++.+++++++.+ +++++.       .+ .        ...++.++++|.++...+..++..
T Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-------~~-~--------~~~~~~~~~~~~~~~~~~~~~~~~  235 (402)
T TIGR00897       173 NTLWSALAFVLTGGVIALFSNKDIFTPQHM-QTREKF-------SE-L--------GKAATILFTNPNVLLGGMVRIINT  235 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHhccCCCCCcccc-cCCcch-------hh-H--------HHHHHHHHcChhHHHHHHHHHHHH
Confidence            776655444333333333332222111110 000000       00 0        012467889999998888888888


Q ss_pred             HHHHHHHhhhhHHHHHhhCCChhhHHHHHHHHHHHHHHHHHHHHHHhHHhhhcCC
Q 014481          350 WGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGV  404 (423)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~r~~  404 (423)
                      ...++..++.|.|+++ +|++..+.+.+.....++.+++.++.|++.||+++|+.
T Consensus       236 ~~~~~~~~~~p~~~~~-~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~  289 (402)
T TIGR00897       236 IGLFGFAVFLPMFVAE-LGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMNT  289 (402)
T ss_pred             HHHHHHHHHHHHHHHH-cCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhH
Confidence            8888889999999975 79999999998899999999999999999999997754

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>PRK09952 shikimate transporter; Provisional

Probab=99.95  E-value=8.8e-26  Score=216.82  Aligned_cols=274  Identities=19%  Similarity=0.165  Sum_probs=202.2

Q ss_pred             hhHHHHHHHHHHHHHHHhhhhhhhhhHHH-hhhhh--CCCcchhhHHH-----HHHHHHHHhhhhhhhhHhhHhcCchHH
Q 014481          111 QRYKLIGTTSLAFVICNMDKVNLSVAIIP-MSHRF--GWNSSVAGLVQ-----SSFFWGYALSQLPGGWLAKIFGGRKVL  182 (423)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~s~~~~~~~~-----~~~~~~~~~~~~~~g~l~dr~G~r~~~  182 (423)
                      ++++.+....++.++.+++...++...+. +.+++  +.++. .+++.     ++..++..+++++.|+++||+|||+++
T Consensus        19 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~G~l~Dr~Grr~~l   97 (438)
T PRK09952         19 RARRAALGSFAGAVVDWYDFLLYGITAALVFNREFFPQVSPA-MGTLAAFATFGVGFLFRPLGGVVFGHFGDRLGRKRML   97 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcH-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhccHHHH
Confidence            35567778888999999999998888775 45555  66665 45553     345566778999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhhHHH--------HHHHHHHHHHhhcccchHhHHHHHHhcCCCCchhhHHHHHHhhhhhHHHH
Q 014481          183 QTGVLIWSLATALLPLLAGFMP--------GLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVA  254 (423)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~  254 (423)
                      +++.++++++.++++ +.++++        .++++|+++|++.+..++....++.|++|+++|++..+....+..+|.++
T Consensus        98 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~g~~~G~~l  176 (438)
T PRK09952         98 MLTVWMMGIATALIG-LLPSFSTIGWWAPVLLVTLRAIQGFAVGGEWGGAALLAVESAPKNKKAFYSSGVQVGYGVGLLL  176 (438)
T ss_pred             HHHHHHHHHHHHHHh-cCCcHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHH
Confidence            999999999988874 555544        58889999999999999999999999999999999999999999999999


Q ss_pred             HHhhHHHhhh--------ccCchHHHHHHHHHHHHHHHHHHhhccCCcCcCCCCCcchhhhhhhhhhhhhHHhhccccCC
Q 014481          255 GLLLAPPIIE--------NLGWESVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKD  326 (423)
Q Consensus       255 g~~~~~~l~~--------~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  326 (423)
                      +..+...+..        .+|||+.|++.+++.++........+|+++......+.                  ++..+.
T Consensus       177 ~~~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~l~~~~l~~~~~es~~~~~~~~~~------------------~~~~~~  238 (438)
T PRK09952        177 STGLVSLISMMTTDEQFLSWGWRIPFLFSIVLVLIALWVRNGMEESAEFEQQQHEQ------------------AAAKKR  238 (438)
T ss_pred             HHHHHHHHHHhCCHHHhhccChHHHHHHHHHHHHHHHHHHHhCCCChhHHHHHhhc------------------cccccc
Confidence            8877766542        47999999988776544333222233332110000000                  000001


Q ss_pred             Cc-HHHhhhcHHHHHHHH-HHHHHHHHHHHHHhhhhHHHHHhhCCChhhHHHHHHHHHHHHHHHHHHHHHHhHHhhhcCC
Q 014481          327 VP-WKAIFRSKAVWAMIY-AHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGV  404 (423)
Q Consensus       327 ~~-~~~~~~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~r~~  404 (423)
                      .+ .+.++++|+.+...+ ..++..+..+....|.|.|+++.+|++......+....++..+++.++.|+++||++||+.
T Consensus       239 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~  318 (438)
T PRK09952        239 IPVIEALLRHPGAFLKIIALRLCELLTMYIVTAFALNYSTQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADRFGRRRV  318 (438)
T ss_pred             CCHHHHHHHchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHH
Confidence            11 234667777766544 4555566777888899999988889988766666666778888899999999999998854

>PRK11043 putative transporter; Provisional

Probab=99.95  E-value=9.1e-26  Score=214.86  Aligned_cols=262  Identities=14%  Similarity=0.175  Sum_probs=214.2

Q ss_pred             HHHHHHHHHHHhhhhhhhhhHHHhhhhhCCCcchhhHHHHHHHHHHHhhhhhhhhHhhHhcCchHHHHHHHHHHHHHHHH
Q 014481          117 GTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALL  196 (423)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~  196 (423)
                      ..+.+...+..+....+.+.+|.+.+++|.++.+.+++.+++.++..++++++|+++||+|||+.+..+.++.+++.++.
T Consensus         9 ~~~~~~~~~~~~~~~~~~p~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~   88 (401)
T PRK11043          9 VYLAGLSMLGFLATDMYLPAFKAIQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGM   88 (401)
T ss_pred             HHHHHHHHHHHHHHHHHHhhHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHH
Confidence            33333445555667788888899999999999999999999999999999999999999999999999998888887766


Q ss_pred             HHhhhHHHHHHHHHHHHHhhcccchHhHHHHHHhcCCCCchhhHHHHHHhhhhhHHHHHHhhHHHhhhccCchHHHHHHH
Q 014481          197 PLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFG  276 (423)
Q Consensus       197 ~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw~~~~~~~~  276 (423)
                       ...++++.+++.|++.|++.+...+...+++.|+++++++++..+.......+|..++|.+++.+.+..|||+.|++.+
T Consensus        89 -~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~~~~~~  167 (401)
T PRK11043         89 -LWVESAAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNHFGWQAIFATLF  167 (401)
T ss_pred             -HHhcCHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHH
Confidence             4567788999999999999888888888999999998889999999999999999999999999999999999999988


Q ss_pred             HHHHHHHHHHHhhccCCcCcCCCCCcchhhhhhhhhhhhhHHhhccccCCCcHHHhhhcHHHHHHHHHHHHHHHHHHHHH
Q 014481          277 LLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCL  356 (423)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  356 (423)
                      ++.++..+..+++++++++++.    ++                    +..++++++++|.++...+...+.........
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~----~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  223 (401)
T PRK11043        168 AITLLLILPTLRLKPSKKARKQ----SQ--------------------DALTFKQLLKSKTYLGNVLIFAACSAAFFAWL  223 (401)
T ss_pred             HHHHHHHHHHHHcCCCCCcccc----ch--------------------HHHHHHHHHcChhHHHHHHHHHHHHHHHHHHH
Confidence            8877766555555544321110    00                    00125678888888776666666666667777


Q ss_pred             hhhhHHHHHhhCCChhhHHHHHHHHHHHHHHHHHHHHHHhHHhhhcCC
Q 014481          357 SWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGV  404 (423)
Q Consensus       357 ~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~r~~  404 (423)
                      .+.|.++++ +|++..+.++......++.+++.++.+++.||+++|+.
T Consensus       224 ~~~p~~~~~-~g~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~~~~~~  270 (401)
T PRK11043        224 TGSPFILEQ-MGYSPADIGLSYVPQTIAFLVGGYGCRAALQKWGGEQL  270 (401)
T ss_pred             HHhHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHH
Confidence            888998875 79999999998888888999999999999999987753

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=99.95  E-value=1.3e-25  Score=213.36  Aligned_cols=266  Identities=18%  Similarity=0.219  Sum_probs=216.5

Q ss_pred             hHHHHHHHHHHHHHHHhhhhhhhhhHHHhhhhhCCCcchhhHHHHHHHHHHHhhhhhhhhHhhHhcCchHHHHHHHHHHH
Q 014481          112 RYKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSL  191 (423)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~  191 (423)
                      .++.+....+...+..+......+.+|.+.+++|.++.+.+++.+++.++..++++++|+++||+|||++++++.++.++
T Consensus         6 ~~~~l~~~~~~~~~~~~~~~~~~p~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~   85 (394)
T PRK11652          6 NVNLLFMLVLLVAVGQMAQTIYVPAIADMARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFIL   85 (394)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHH
Confidence            45556666666666667778888889999999999999999999999999999999999999999999999999998888


Q ss_pred             HHHHHHHhhhHHHHHHHHHHHHHhhcccchHhHHHHHHhcCCCCchhhHHHHHHhhhhhHHHHHHhhHHHhhhccCchHH
Q 014481          192 ATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESV  271 (423)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw~~~  271 (423)
                      +.++. ...++++.+++.|++.|++.+...+....+..|.+++++++++.++...+..+|..+||.+++.+.+..|||+.
T Consensus        86 ~~~~~-~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~  164 (394)
T PRK11652         86 GTLVA-LFAHSLTVLIAASAIQGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTLFGWRAC  164 (394)
T ss_pred             HHHHH-HHHccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHH
Confidence            88776 45677889999999999998888888888999999989999999999999999999999999999998899999


Q ss_pred             HHHHHHHHHHHHH-HHHhhccCCcCcCCCCCcchhhhhhhhhhhhhHHhhccccCCCcHHHhhhcHHHHHHHHHHHHHHH
Q 014481          272 FYIFGLLGIAWFS-GFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSW  350 (423)
Q Consensus       272 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  350 (423)
                      |++.++..++..+ ..++.+|+++.+..    +.+   .                ...+++++++|.++...+..+....
T Consensus       165 f~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~---~----------------~~~~~~~~~~~~~~~~~~~~~~~~~  221 (394)
T PRK11652        165 YLFLLLLGAGVTFSMARWMPETRPADAR----RTR---V----------------LASYRTLLSNRRFNCYLLMLIGTLA  221 (394)
T ss_pred             HHHHHHHHHHHHHHHHHhCCccCccccc----hhH---H----------------HHHHHHHHcChHHHHHHHHHHHHHH
Confidence            9998877665543 33445554322110    000   0                0124677888888877666666666


Q ss_pred             HHHHHHhhhhHHHHHhhCCChhhHHHHHHHHHHHHHHHHHHHHHHhHHhhh
Q 014481          351 GHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIA  401 (423)
Q Consensus       351 ~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~  401 (423)
                      ....+..+.+.++++.+|+++.+.+++.....++.+++..+.+++.||+++
T Consensus       222 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~  272 (394)
T PRK11652        222 GIAVFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFST  272 (394)
T ss_pred             HHHHHHHhChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            666667778888988889999999998888888888999999999999873

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.95  E-value=5e-26  Score=219.36  Aligned_cols=284  Identities=14%  Similarity=0.151  Sum_probs=213.8

Q ss_pred             hHHHHHHHHHHHHHHHhhhhhhhhhHHHhhhhhCCCcchhhHHHHHHHHHHHhhhhhhhhHhhHhcCchHHHHHHHHHHH
Q 014481          112 RYKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSL  191 (423)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~  191 (423)
                      +|.++...++...........++..++.+.+++|.+..+.+++.+.+.++..++.++.|+++||+|||++++.+.++.++
T Consensus        17 ~w~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~   96 (455)
T TIGR00892        17 GWVVLGATFVSIGFSYAFPKAVTVFFKELQQIFQATYSETAWISSIMLAVLYAGGPISSILVNRFGCRPVVIAGGLLASL   96 (455)
T ss_pred             chHHHHHHHHHHHHHHhhhcchhhhHHHHHHHhCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHcCchHHHHhhHHHHHH
Confidence            46666666666665555666678889999999999999999999999999999999999999999999999999988888


Q ss_pred             HHHHHHHhhhHHHHHHH-HHHHHHhhcccchHhHHHHHHhcCCCCchhhHHHHHHhhhhhHHHHHHhhHHHhhhccCchH
Q 014481          192 ATALLPLLAGFMPGLVL-SRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWES  270 (423)
Q Consensus       192 ~~~~~~~~~~~~~~~~~-~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw~~  270 (423)
                      +.+++ ..+++++.+++ .|++.|++.+...+...+++.++++ ++|+++.|+.+.+..+|..++|++++.+.+.+|||+
T Consensus        97 ~~~~~-~~~~~~~~l~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~r~~a~g~~~~~~~~g~~~~~~l~~~l~~~~gwr~  174 (455)
T TIGR00892        97 GMILA-SFSSNVIELYLTAGFITGLGLAFNFQPSLTMLGKYFY-RRRPLANGLAMAGSPVFLSTLAPLNQYLFESFGWRG  174 (455)
T ss_pred             HHHHH-HHhhhHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHH-hhHHHHHHHHHhcccHHHHHHHHHHHHHHHHhChHH
Confidence            88776 45566666654 5789999998777777888899996 799999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhccCCcCcCC-CCCcchhhhhhhhhhhhhH-HhhccccCCCcHHHhhhcHHHHHHHHHHHHH
Q 014481          271 VFYIFGLLGIAWFSGFKILQEGETSNGA-TLAPRSNYINMKKSLSASL-EEMGESLKDVPWKAIFRSKAVWAMIYAHFCG  348 (423)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  348 (423)
                      +|++.+++.++..+..+++.+.++.... ..+.++............. ....+..+..+ .+++++|.++...+..++.
T Consensus       175 ~f~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~  253 (455)
T TIGR00892       175 SFLILGGLLLHCCVCGALMRPVGPSQRVSKSKSKEGLPPDGSTKKLSKKSTAEKINRFLD-FSLFTHRGFLVYLSGNVIM  253 (455)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCCcccccccccccccCCCCCccccccccchhhhhhhhcc-hHHhcCchHHHHHHHHHHH
Confidence            9999998877665544444332211000 0000000000000000000 00000001111 2578899999888888888


Q ss_pred             HHHHHHHHhhhhHHHHHhhCCChhhHHHHHHHHHHHHHHHHHHHHHHhHHh
Q 014481          349 SWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNL  399 (423)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~  399 (423)
                      ..+.+....++|.|+++ .|++..+++.+.++.+++.++++++.|++.||.
T Consensus       254 ~~~~~~~~~~l~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~  303 (455)
T TIGR00892       254 FLGFFAPIIFLVPYAKD-KGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLK  303 (455)
T ss_pred             HHHccchHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            88888888899999976 699999999999999999999999999999974

>TIGR00895 2A0115 benzoate transport

Probab=99.95  E-value=1.5e-25  Score=212.98  Aligned_cols=289  Identities=26%  Similarity=0.334  Sum_probs=215.1

Q ss_pred             hHHHHHHHHHHHHHHHhhhhhhhhhHHHhhhhhCCCcchhhHHHHHHHHHHHhhhhhhhhHhhHhcCchHHHHHHHHHHH
Q 014481          112 RYKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSL  191 (423)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~  191 (423)
                      +++.+....+..+...++........|.+.+++|.+..+.+++.+++.++..++.++.|+++||+|||+.+.++.++.++
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~   94 (398)
T TIGR00895        15 QWRAIILSFLIMLMDGYDLAAMGFAAPAISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRKRVLLWSILLFSV   94 (398)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHH
Confidence            45666666667777777778888889999999999999999999999999999999999999999999999999988888


Q ss_pred             HHHHHHHhhhHHHHHHHHHHHHHhhcccchHhHHHHHHhcCCCCchhhHHHHHHhhhhhHHHHHHhhHHHhhhccCchHH
Q 014481          192 ATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESV  271 (423)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw~~~  271 (423)
                      +.++. ...++++.+++.|++.|++.+...+...+++.|++|+++|++++++...+..+|..+++.+++.+.+..||++.
T Consensus        95 ~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~  173 (398)
T TIGR00895        95 FTLLC-ALATNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGWRSL  173 (398)
T ss_pred             HHHHH-HHccchHHHHHHHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhhcccceee
Confidence            87766 45677788999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHH-HHHHHhhccCCcCcCCCCCcchhhh--hhhhhhhhh----HHhh-ccc-cCCCcHHHhhhc---HHHH
Q 014481          272 FYIFGLLGIAW-FSGFKILQEGETSNGATLAPRSNYI--NMKKSLSAS----LEEM-GES-LKDVPWKAIFRS---KAVW  339 (423)
Q Consensus       272 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~----~~~~-~~~-~~~~~~~~~~~~---~~~~  339 (423)
                      |++.+++.++. .+...+++++++....+..++....  ........+    ..+. .+. .....++.++++   +..+
T Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (398)
T TIGR00895       174 FYVGGIAPLLLLLLLMRFLPESIDFLVSKRPETVRRIVNAIAPQMQAEAQSALPEQKATQGTKRSVFKALFQGKTARITV  253 (398)
T ss_pred             hhhhhhHHHHHHHHHHHhCCCCChHHHhcCHHHHHHHHHHHHHhccccccccccccccccchhhHHHHHHhcchhHHHHH
Confidence            99987665544 4444555554432111100000000  000000000    0000 000 001112222222   3344


Q ss_pred             HHHHHHHHHHHHHHHHHhhhhHHHHHhhCCChhhHHHHHHHHHHHHHHHHHHHHHHhHHhhhc
Q 014481          340 AMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIAT  402 (423)
Q Consensus       340 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~r  402 (423)
                      .+.+..++..........++|.+. +.+|+++.+++.+.....++.+++.++.+++.||+++|
T Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  315 (398)
T TIGR00895       254 LLWLLYFMLLVGVYFLTNWLPKLM-VELGFSLSLAATGGALFNFGGVIGSIIFGWLADRLGPR  315 (398)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchH
Confidence            444555566666777778888555 45799999999999999999999999999999999877

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=99.95  E-value=5.3e-26  Score=221.41  Aligned_cols=290  Identities=20%  Similarity=0.264  Sum_probs=207.5

Q ss_pred             HHHHHHHHHHHHHHhhhhhhhhhHHHhhhhhCCC--------cchhhHHHHHHHHHHHhhhhhhhhHhhHhcCchHHHHH
Q 014481          114 KLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWN--------SSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTG  185 (423)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s--------~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~  185 (423)
                      ....++.++.++..++.....+.++.+..+++.+        ..+.+++.+++.++..++++++|+++||+|||++++++
T Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~  107 (481)
T TIGR00879        28 LLSLIAAIGGLMFGYDTGVIGGALALPAFEFKFTSANSDSYSSSLWGLVVSIFLVGGFIGALFAGWLSDRFGRKKSLLII  107 (481)
T ss_pred             HHHHHHHHHHHhcccccchhhhhhhcHHHHHhcCCcccCCCChhHHHHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHHHH
Confidence            3344444555666677788888888888888777        88999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhh--HHHHHHHHHHHHHhhcccchHhHHHHHHhcCCCCchhhHHHHHHhhhhhHHHHHHhhH---H
Q 014481          186 VLIWSLATALLPLLAG--FMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLA---P  260 (423)
Q Consensus       186 ~~~~~~~~~~~~~~~~--~~~~~~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~---~  260 (423)
                      .++.+++.+++.....  +++.++++|++.|++.+...+...+++.|++|+++|++++++++.+..+|.++++.++   +
T Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~  187 (481)
T TIGR00879       108 ALLFVIGAILMGLAAFALSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFGSGKV  187 (481)
T ss_pred             HHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHhHHHHHHHccCChhhhhhhhhHHHHHHHHHHHHHHHHHHHhh
Confidence            9998888877643332  3458999999999999999999999999999999999999999999999999999999   6


Q ss_pred             HhhhccCchHHHHHHHHHHHHHHHHHHhhccCCcCcCCCCCcchhhhhhhh---------hhh------hhHHhhccccC
Q 014481          261 PIIENLGWESVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKK---------SLS------ASLEEMGESLK  325 (423)
Q Consensus       261 ~l~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~------~~~~~~~~~~~  325 (423)
                      .+.+..+||+.|++.++..++.++..++++|++.....+.+.++......+         ...      ....+......
T Consensus       188 ~~~~~~~w~~~f~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (481)
T TIGR00879       188 SLNNTLGWRIPLGLQLIPAGLLFLGLFFLPESPRWLVGKGRVEEARKSLARLRGTSGEDKELLDELELIDIKRSIEKRSV  267 (481)
T ss_pred             cCCCCccHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHcCChHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHhhc
Confidence            666778999999997777666666666777654321111110000000000         000      00000000011


Q ss_pred             CCcHHHhhh------cHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhhCCChhhHHHHHHHHHHHHHHHHHHHHHHhHHh
Q 014481          326 DVPWKAIFR------SKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNL  399 (423)
Q Consensus       326 ~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~  399 (423)
                      ...+++.++      .+.++...+..+...........+.|.++.+ +|++..+++....+..++.+++.++.|++.||+
T Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~  346 (481)
T TIGR00879       268 QPSWGSLFSSTRRIRRRLFLGVVLQWFQQFTGINAIMYYSPTIFEN-AGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRF  346 (481)
T ss_pred             cccHHHHHhcCchhHHHHHHHHHHHHHHHHhCCeehHHHHHHHHHH-cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            111333333      2333333444444444444556667777764 699998888999999999999999999999999


Q ss_pred             hhcCC
Q 014481          400 IATGV  404 (423)
Q Consensus       400 ~~r~~  404 (423)
                      ++|+.
T Consensus       347 ~~~~~  351 (481)
T TIGR00879       347 GRRPL  351 (481)
T ss_pred             cchHH
Confidence            98854

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=99.95  E-value=5.6e-26  Score=221.49  Aligned_cols=292  Identities=17%  Similarity=0.230  Sum_probs=204.0

Q ss_pred             hHHHHHHHHHHHHHHHhhhhhhhhhHHHhhhhh--------CCCcchhhHHHHHHHHHHHhhhhhhhhHhhHhcCchHHH
Q 014481          112 RYKLIGTTSLAFVICNMDKVNLSVAIIPMSHRF--------GWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQ  183 (423)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~  183 (423)
                      ..+.++...++.+...++...+++..+.+++++        +.+..+.+++.+++.++..++++++|+++||+|||++++
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ig~~~~~~~~G~l~dr~Grr~~~~   89 (479)
T PRK10077         10 IFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLK   89 (479)
T ss_pred             HHHHHHHHHHHHHhcCcccceehHhHHHHHHHhcccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHH
Confidence            445666677788888888889998888888877        888999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHh-----------hhHHHHHHHHHHHHHhhcccchHhHHHHHHhcCCCCchhhHHHHHHhhhhhHH
Q 014481          184 TGVLIWSLATALLPLL-----------AGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGS  252 (423)
Q Consensus       184 ~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~  252 (423)
                      ++.++++++.++.+..           .+.++.++++|+++|++.|...+...++++|++|+++|++++++.+.+..+|.
T Consensus        90 ~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~  169 (479)
T PRK10077         90 IAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQ  169 (479)
T ss_pred             HHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCChhhhhHHHHHHHHHHHHHH
Confidence            9999988877665431           12356788999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhHHHhh--------hccCchHHHHHHHHHHHHHHHHHHhhccCCcCcCCCCCcchhhhhhh-----hhhhhhHHh
Q 014481          253 VAGLLLAPPII--------ENLGWESVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMK-----KSLSASLEE  319 (423)
Q Consensus       253 ~~g~~~~~~l~--------~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~  319 (423)
                      ++++.+++.+.        +..|||+.|++.+++.++..+..+++||+++....+.+.++.....+     .......++
T Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (479)
T PRK10077        170 LVVYFVNYFIARSGDASWLNTDGWRYMFASEAIPALLFLMLLYFVPETPRYLMSRGKQEQAEGILRKIMGNTLATQALQE  249 (479)
T ss_pred             HHHHHHHHHHhccCcccccccCChHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHcCCHHHHHHHHHHHcCChhHHHHHHH
Confidence            99988776553        35689999999888887776667777776543211111111000000     000000000


Q ss_pred             hcccc--CCCcHHHhhhcHHHHH---HHHHHHHHHHHHHHHHhhhhHHHHHhhCCChhhHHHHHHHHHHHHHHHHHHHHH
Q 014481          320 MGESL--KDVPWKAIFRSKAVWA---MIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQ  394 (423)
Q Consensus       320 ~~~~~--~~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~  394 (423)
                      ..+..  +....+..+.......   .....+....+.+...++.|.+..+ .|++....++.....+++.+++.++.++
T Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~-~g~~~~~~~~~~~~~~~~~~i~~~~~g~  328 (479)
T PRK10077        250 IKHSLDHGRKTGGKLLMFGVGVIVIGVMLSVFQQFVGINVVLYYAPEIFKT-LGASTDIALLQTIIVGVINLTFTVLAIM  328 (479)
T ss_pred             HHHHHHHhhhhhhhhcchhHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHH-cCCCCchHHHHHHHHHHHHHHHHHHHHH
Confidence            00000  0000001111000000   0111122222233445566777664 6888877778888888999999999999


Q ss_pred             HhHHhhhcCC
Q 014481          395 FADNLIATGV  404 (423)
Q Consensus       395 l~dr~~~r~~  404 (423)
                      ++||+++|+.
T Consensus       329 l~dr~g~r~~  338 (479)
T PRK10077        329 TVDKFGRKPL  338 (479)
T ss_pred             HHHHhcChHH
Confidence            9999998854

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=99.95  E-value=3.5e-25  Score=210.20  Aligned_cols=268  Identities=16%  Similarity=0.180  Sum_probs=214.3

Q ss_pred             HHHHHHHHHHHHhhhhhhhhhHHHhhhhhCCCcchhhHHHHHHHHHHHhhhhhhhhHhhHhcCchHHHHHHHHHHHHHHH
Q 014481          116 IGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATAL  195 (423)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~  195 (423)
                      +..+++.++..++......+.+|.+++++|++..+.|++.+.+.+++.+++++.|++.||+|||++++++.++++++.++
T Consensus         5 ~~~~~~~f~~~G~~~~~~~~l~~~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~~l   84 (410)
T TIGR00885         5 FALITSLFALWGFANDITNPMVPQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALGAFL   84 (410)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHH
Confidence            45666777777788888899999999999999999999999999999999999999999999999999999999998876


Q ss_pred             HHHh--hhHHHHHHHHHHHHHhhcccchHhHHHHHHhcCCCCchhhHHHHHHhhhhhHHHHHHhhHHHhhhc--------
Q 014481          196 LPLL--AGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIEN--------  265 (423)
Q Consensus       196 ~~~~--~~~~~~~~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~--------  265 (423)
                      +...  .++++.+++.|++.|+|.+...+....++.+..|+++|++.+++.+...++|..+||.+++.+...        
T Consensus        85 ~~~~~~~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~~~~~~~~~~  164 (410)
T TIGR00885        85 FWPAAEIMNYTLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLILSNLPHQSQD  164 (410)
T ss_pred             HHHHHhhccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhh
Confidence            5322  357788999999999999999999999999999999999999999999999999999999877532        


Q ss_pred             ------------------cCchHHHHHHHHHHHHHHHHHHhhccCCcCcCCCCCcchhhhhhhhhhhhhHHhhccccCCC
Q 014481          266 ------------------LGWESVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDV  327 (423)
Q Consensus       266 ------------------~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  327 (423)
                                        .+||++|++.+++.++..+...+.+.++.++ .+ .+++                   ....
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~~~~~~~p~~~~-~~-~~~~-------------------~~~~  223 (410)
T TIGR00885       165 VLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVALLIMLTKMPALNH-SD-AKQI-------------------SFSA  223 (410)
T ss_pred             hhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc-cc-cccc-------------------cchh
Confidence                              3699999998887766544443332221111 00 0000                   0001


Q ss_pred             cHHHhhhcHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhh-CCChhhHHHHHHHHHHHHHHHHHHHHHHhHHhhhcCC
Q 014481          328 PWKAIFRSKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEEL-SLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGV  404 (423)
Q Consensus       328 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~r~~  404 (423)
                      +.++++++|.++...+..+++...+.+..++++.|.++.. +.+...++...+....+..+|+++++++.||+++|+.
T Consensus       224 ~~~~~~~~~~~~~~~l~~f~yvg~e~~~~s~l~~y~~~~~~~~~~~~a~~~~~~~~~~~~vGR~~~~~l~~r~~~~~~  301 (410)
T TIGR00885       224 SLSRLARIRHYREGVIAQFFYVGVQIMCWTFIIQYAVRLIPGMTAGFAANYNIGAMVIFFISRFIGTWLISYLAAHKV  301 (410)
T ss_pred             hHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHH
Confidence            2457889999999888888888888888899999997632 4444555656666778889999999999999988753

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.94  E-value=3.3e-25  Score=209.42  Aligned_cols=262  Identities=15%  Similarity=0.104  Sum_probs=206.2

Q ss_pred             HHHHHHHHHHHHHHhhhhhhhhhHHHhhhhhCCCcchhhHHHHHHHHHHHhhhhhhhhHhhHhcCchHHHHHHHHHHHHH
Q 014481          114 KLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLAT  193 (423)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~  193 (423)
                      +.+..++++.++..+......+.+|.+.+++|.|..++|++.+.+.++..+++++.|+++||+|||+++..+.++.+++.
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~g~k~~~~~~~~~~~~~~   85 (381)
T PRK03633          6 RPVLLLLCGLLLLTLAIAVLNTLVPLWLAQEHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRIGFNRSYYLASLIFAAGC   85 (381)
T ss_pred             HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44667777888888899999999999999999999999999999999999999999999999999999999999998888


Q ss_pred             HHHHHhhhHHHHHHHHHHHHHhhcccchHhHHHHHHhcCCCCchhhHHHHHHhhhhhHHHHHHhhHHHhhhccCchHHHH
Q 014481          194 ALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFY  273 (423)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw~~~~~  273 (423)
                      +++ ..+++++.++++|+++|++.+...+...+.+.+..++++|+++++++..+.++|..+||.+++.+.+...|.. .+
T Consensus        86 ~~~-~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~-~~  163 (381)
T PRK03633         86 AGL-GLMVGFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLVSKVSTELMSVL-PW  163 (381)
T ss_pred             HHH-HHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchH-HH
Confidence            776 4577889999999999999998888888888888998999999999999999999999999999877543333 33


Q ss_pred             HHHHHHHHHHHHHHhhccCCcCcCCCCCcchhhhhhhhhhhhhHHhhccccCCCcHHHhhhcHHHHHHHHHHHHHHHHHH
Q 014481          274 IFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHY  353 (423)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  353 (423)
                      ..+......+. ..+.+.+++..+ +   +                     +..++++.+++|.++......+.....+.
T Consensus       164 ~~~~~~~~~~~-~~~~~~~~~~~~-~---~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  217 (381)
T PRK03633        164 VTGLVLAAILP-LLFTRILNQQAE-N---H---------------------DSTSIWPMLKLRQARLGVNGCIISGIVLG  217 (381)
T ss_pred             HHHHHHHHHHH-HHHhcccCCCCC-C---C---------------------CCCCHHHHHHhcchHHHHHHHHHHHHHHH
Confidence            33322222211 122222111100 0   0                     01124567788877765554555555566


Q ss_pred             HHHhhhhHHHHHhhCCChhhHHHHHHHHHHHHHHHHHHHHHHhHHhhhcCC
Q 014481          354 TCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGV  404 (423)
Q Consensus       354 ~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~r~~  404 (423)
                      ....++|.|+++ .|.++.+++.+.+...++.++++++.|++.||+++|+.
T Consensus       218 ~~~~~lp~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~  267 (381)
T PRK03633        218 SLYGLMPLYLNH-QGMSDASIGFWMALLVSAGILGQWPIGRLADRFGRLLV  267 (381)
T ss_pred             HHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcHHH
Confidence            667789999986 59999999999999999999999999999999998743

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=99.94  E-value=3.6e-25  Score=209.58  Aligned_cols=266  Identities=14%  Similarity=0.087  Sum_probs=204.8

Q ss_pred             HHHHHHHHHHhhhhhhhhhHHHhhhhhCCCcchhhHHHHHHHHHHHhhhhhhhhHhhHhcCchHHHHHHHHHHHHHHHHH
Q 014481          118 TTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLP  197 (423)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~  197 (423)
                      .++++.++..++........+.+.+++|.+..+.+++.+.+.+++.++.+++|+++||+|||++++++.++.+++.+++.
T Consensus         7 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~~~   86 (393)
T PRK11195          7 AIMAAQFFSALADNALLFAAIALLKELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCLLML   86 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHHHHH
Confidence            45666777777666666666677889999999999999999999999999999999999999999999999888776653


Q ss_pred             HhhhHHHHHHHHHHHHHhhcccchHhHHHHHHhcCCCCchhhHHHHHHhhhhhHHHHHHhhHHHhhhccCchHHHHHHHH
Q 014481          198 LLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGL  277 (423)
Q Consensus       198 ~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw~~~~~~~~~  277 (423)
                       +..+   .++.|+++|++.+...|...+++.|++|+++|++++|+.+....+|.++||.++|.+.+. .|+..+.+.+.
T Consensus        87 -~~~~---~~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~-~~~~~~~i~~~  161 (393)
T PRK11195         87 -FGIH---PLLAYGLVGIGAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALADP-HAEAALAVCAL  161 (393)
T ss_pred             -HHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence             3444   277899999999999999999999999999999999999999999999999999999885 47777777666


Q ss_pred             HHHHHHHHHHhhccCCcCcCCCCCcchhhhhhhhhhhhhHHhhccccCCCcHHHhhhcHHHHHHHHHHHHHHHHHHHHHh
Q 014481          278 LGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLS  357 (423)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  357 (423)
                      ..++..+..+.+|+++.++...+.+...   ..+.   ..         ..++.++++|.+....+..++..........
T Consensus       162 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~---~~~~---~~---------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  226 (393)
T PRK11195        162 IYLLAALFNLFIPRLGARRPGQSWNPIA---LLRD---FF---------HACRVLWRDKLGRFSLAGTTLFWGAGATLRF  226 (393)
T ss_pred             HHHHHHHHHhcCCCCcccccccCCCHHH---HHHH---HH---------HHHHHHHhCchhHHHHHHHHHHHHHHHHHHH
Confidence            5555555555666543221111100000   0000   00         0135678888776655555454555556667


Q ss_pred             hhhHHHHHhhCCChhhHHHHHHHHHHHHHHHHHHHHHHhHHhhhcC
Q 014481          358 WLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATG  403 (423)
Q Consensus       358 ~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~r~  403 (423)
                      .+|.|+++.+|+++.+.|++.+...++.+++.++.+++.||.++++
T Consensus       227 ~~~~~~~~~lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~~~~~  272 (393)
T PRK11195        227 LVLAWAPVALGITLNQPAYLQAVVAIGIAVGAGAAARLVTLETVLR  272 (393)
T ss_pred             HHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccc
Confidence            7788888889999999999999999999999999999999877664

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.94  E-value=3e-25  Score=217.34  Aligned_cols=293  Identities=17%  Similarity=0.185  Sum_probs=210.4

Q ss_pred             hhHHHHHHHHHHHHHHHhhhhhhhhhHHHhhhhhCCCcchhhHHHHHHHHHHHhhhhhhhhHhhHhcCchHHHHHHHHHH
Q 014481          111 QRYKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWS  190 (423)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~  190 (423)
                      ++|+.+..++++.++..++.....+.+|.+.+++|++..+.+++.+.+.+++.++.++.|+++||+|||++++++.++.+
T Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~   96 (496)
T PRK03893         17 AQWKAFSAAWLGYLLDGFDFVLITLVLTEVQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGDRYGRRLAMVISIVLFS   96 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence            45677788888899999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHhhcccchHhHHHHHHhcCCCCchhhHHHHHHhhhhhHHHHHHhhHHHhhhccCchH
Q 014481          191 LATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWES  270 (423)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw~~  270 (423)
                      ++.++. ...++++.+++.|++.|++.+...+....++.|++|+++|+++++++..+..+|..++|.+++.+.+..+||+
T Consensus        97 ~~~~~~-~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~  175 (496)
T PRK03893         97 VGTLAC-GFAPGYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYSLVVPVWGWRA  175 (496)
T ss_pred             HHHHHH-HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHH
Confidence            888777 4567789999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhccCCcCcCCCCCcchhhhhhhhhhhhhHHh---------------hccccCCCcHH-----
Q 014481          271 VFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEE---------------MGESLKDVPWK-----  330 (423)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~-----  330 (423)
                      .|++.++..++.++....+|++++....+..........+.........               .........+.     
T Consensus       176 ~f~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (496)
T PRK03893        176 LFFIGILPIIFALWLRKNLPEAEDWKEKHAGKAPVRTMVDILYRGEHRIINILLTLAAAAALWFCFAGNLQNAAIVAVLG  255 (496)
T ss_pred             HHHHHHHHHHHHHHHHHhCCCchhhhhhccccccchhHHHHHhcchhHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHH
Confidence            9987544444333333334443221111100000000000000000000               00000000000     


Q ss_pred             ------------Hh--hhcHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhhCCChhhHHHHHHHHHHHHHHHHHHHHHHh
Q 014481          331 ------------AI--FRSKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFA  396 (423)
Q Consensus       331 ------------~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~  396 (423)
                                  +.  .+.+......+..+...........++|.|+++.+|++..+++.+.+...++.+++.++.|++.
T Consensus       256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~  335 (496)
T PRK03893        256 LLCAAIFISFMVQSSGKRWPTGVMLMVVVLFAFLYSWPIQALLPTYLKTDLGYDPHTVANVLFFSGFGAAVGCCVGGFLG  335 (496)
T ss_pred             HHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHhccchHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                        00  0001111111111111111123457899999877899999999999999999999999999999


Q ss_pred             HHhhhcCC
Q 014481          397 DNLIATGV  404 (423)
Q Consensus       397 dr~~~r~~  404 (423)
                      ||+++|+.
T Consensus       336 dr~g~~~~  343 (496)
T PRK03893        336 DWLGTRKA  343 (496)
T ss_pred             HHhcchHH
Confidence            99998854

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.94  E-value=5.7e-25  Score=207.52  Aligned_cols=259  Identities=14%  Similarity=0.012  Sum_probs=200.0

Q ss_pred             HHHHHHHhhhhhhhhhHHH-hhhhhCCCcchhhHHHHHHHHHHHhhhhhhhhHhhHhcCchHHHH-HHHHHHHHHHHHHH
Q 014481          121 LAFVICNMDKVNLSVAIIP-MSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQT-GVLIWSLATALLPL  198 (423)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~-~~~~~~~~~~~~~~  198 (423)
                      +.+++..+......+.+|. +.+++|.+..+.|++.+++.+...+.+++.|+++||+|||+.+++ +.++..++.+++ .
T Consensus         4 ~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~-~   82 (375)
T TIGR00899         4 LVAFLTGIAGALQFPTLSLFLSEEVRARPAMIGLFYTGSAIVGIAVSQLLATRSDYQGDRKGLILFCCLLAALACLLF-A   82 (375)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHH-H
Confidence            4566777777888888887 568899999999999999999999999999999999999987665 444444454454 5


Q ss_pred             hhhHHHHHHHHHHHHHhhcccchHhHHHHHHhcCCCCchhhH--HHHHHhhhhhHHHHHHhhHHHhhhccCchHHHHHHH
Q 014481          199 LAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRA--VSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFG  276 (423)
Q Consensus       199 ~~~~~~~~~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~--~~~~~~~~~~g~~~g~~~~~~l~~~~gw~~~~~~~~  276 (423)
                      .+++++.+++.|++.|.+.+...|...+++.++.++++|+++  .++...+.++|.++||++++.+.+..|||+.|++.+
T Consensus        83 ~~~~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~~~~~~~f~~~~  162 (375)
T TIGR00899        83 WNRNYFLLLVLGVLLSSFASTANPQLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLALGFGFTVMFLTAA  162 (375)
T ss_pred             hcchHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHHHhcccHHHHHHHH
Confidence            667778888899999888888888888888998887777654  678888899999999999999999899999999998


Q ss_pred             HHHHHHHHHH-HhhccCCcCcCCCCCcchhhhhhhhhhhhhHHhhccccCCCcHHHhhhcHHHHHHHHHHHHHHHHHHHH
Q 014481          277 LLGIAWFSGF-KILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTC  355 (423)
Q Consensus       277 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  355 (423)
                      ++.++..+.. +++||.++....+.   +                     ..++++.++++.++...+..++........
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~---~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  218 (375)
T TIGR00899       163 LAFVLCGVLVWLFLPSYPRGAPGAL---T---------------------RLEVRGLLASRDTRLLFVACTLMWGCNILY  218 (375)
T ss_pred             HHHHHHHHHHHHhCCCcccCccccc---C---------------------cchhhhhhcCcchHHHHHHHHHHHHHHHHH
Confidence            8876665444 34555432211100   0                     001234566777776665555555555666


Q ss_pred             HhhhhHHHHHhhCCChhhHHHHHHHHHHHHHHHHHHHHHHhHHhhhcCC
Q 014481          356 LSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGV  404 (423)
Q Consensus       356 ~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~r~~  404 (423)
                      ..++|.|+++.+|.++.+.+.+.....+..+++.++.|++.||+++|+.
T Consensus       219 ~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~  267 (375)
T TIGR00899       219 IINMPLLIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRL  267 (375)
T ss_pred             HhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchhH
Confidence            7788999988889999999988888777888899999999999998854

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=99.94  E-value=1.5e-25  Score=219.19  Aligned_cols=294  Identities=17%  Similarity=0.181  Sum_probs=208.9

Q ss_pred             hhHHHHHHHHHHHHHHHhhhhhhhhhHHHhhhhh-----CCCcchhhHHHHHHHHHHHhhhhhhhhHhhHhcCchHHHHH
Q 014481          111 QRYKLIGTTSLAFVICNMDKVNLSVAIIPMSHRF-----GWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTG  185 (423)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~  185 (423)
                      .+++.+.++.++.+..+++....+...|.+..++     +.+..+.+++.+.+.+++.++.+++|+++||+|||+++.++
T Consensus        13 ~~~~~~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~~Grr~~~~~~   92 (502)
T TIGR00887        13 QHFRAIVIAGVGFFTDSYDLFCISLVTKMLGYVYYHGKGPLPSSVSAAVNGSASIGTLAGQLFFGWLADKLGRKRVYGME   92 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHH
Confidence            3556777788888889999999998888876642     34556778999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhh-----HHHHHHHHHHHHHhhcccchHhHHHHHHhcCCCCchhhHHHHHHhhhhhHHHHHHhhHH
Q 014481          186 VLIWSLATALLPLLAG-----FMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAP  260 (423)
Q Consensus       186 ~~~~~~~~~~~~~~~~-----~~~~~~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~  260 (423)
                      .+++.++.++.....+     +++.++++|++.|++.+...+....++.|++|+++|++++++.+....+|.++++.++.
T Consensus        93 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~~~~~  172 (502)
T TIGR00887        93 LIIMIIATVASGLSPGSSPKSVMATLCFWRFWLGVGIGGDYPLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGAIVAL  172 (502)
T ss_pred             HHHHHHHHHHHHHccCcccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9998888876643222     26789999999999999999999999999999999999999999999999999998887


Q ss_pred             Hhhh-----------------------ccCchHHHHHHHHHHHHHHHHHHhhccCCcCcCCCCCcch-hhhhhhh----h
Q 014481          261 PIIE-----------------------NLGWESVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRS-NYINMKK----S  312 (423)
Q Consensus       261 ~l~~-----------------------~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~----~  312 (423)
                      .+..                       ..+||+.+.+.++..++.++..+++||+++....+.++++ ......+    .
T Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip~~i~~~~~~~lpESpr~l~~~~~~~~~a~~~~~~~~~~~  252 (502)
T TIGR00887       173 IVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPALLALYFRLTIPETPRYTADVAKDVEQAASDMSAVLQVK  252 (502)
T ss_pred             HHHHHhccccccccccccccccccchhcccHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHhCcchHHHHHHHHHHhccc
Confidence            6532                       1379999988888888777777888998875322211111 1100000    0


Q ss_pred             hhhhHH---hhc--cccCCCcHHHhhhc---HHH----HHHHHHHHHHHHHHHHHHhhhhHHHHHhhCCChhhHHH----
Q 014481          313 LSASLE---EMG--ESLKDVPWKAIFRS---KAV----WAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAW----  376 (423)
Q Consensus       313 ~~~~~~---~~~--~~~~~~~~~~~~~~---~~~----~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~----  376 (423)
                      ..++.+   +.+  ++..+.++++++++   ++.    +...+..+...+.+++...+.|.++++ .|++...++.    
T Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~p~i~~~-~G~~~~~~~~~~~~  331 (502)
T TIGR00887       253 IEAEPDEVEKASTAVEVPKASWSDFFTHFFKWRHGKHLLGTAGSWFLLDIAFYGVNLNQKVILSA-IGYSPPAATNNAYE  331 (502)
T ss_pred             cccCcccccchhccccchhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHccccccHHHHHH-HcCCCCccchhHHH
Confidence            000000   000  01111357777653   222    112223344445566777788999875 6887543221    


Q ss_pred             --------HHHHHHHHHHHHHHHHHHHhHHhhhcCCc
Q 014481          377 --------VSILPPLASVLVTSIAAQFADNLIATGVE  405 (423)
Q Consensus       377 --------~~~~~~~~~~~~~~~~g~l~dr~~~r~~~  405 (423)
                              ...+..++.+++.++.++++||+|||+..
T Consensus       332 ~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~gRR~~l  368 (502)
T TIGR00887       332 ELYKTAVGNLIIALAGTVPGYWVTVFLVDIIGRKPIQ  368 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhHH
Confidence                    23344556777889999999999998653

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>TIGR00896 CynX cyanate transporter

Probab=99.94  E-value=2.4e-25  Score=208.48  Aligned_cols=247  Identities=17%  Similarity=0.224  Sum_probs=199.4

Q ss_pred             hhhhhhhhHHHhhhhhCCCcchhhHHHHHHHHHHHhhhhhhhhHhhHhcCchHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 014481          129 DKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVL  208 (423)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (423)
                      .....++.+|.+.+++|++..+.+++.+++.+++.++.++.|+++||+|||+++.++.++.+++.+..  ..++.+.+++
T Consensus        15 ~~~~~~~~lp~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~--~~~~~~~l~~   92 (355)
T TIGR00896        15 ALTSVGPLLPQIRSALGMSFSVAGLLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR--SAPGTALLFA   92 (355)
T ss_pred             ccccCcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH--HhccHHHHHH
Confidence            33567788999999999999999999999999999999999999999999999999988877776554  4566788889


Q ss_pred             HHHHHHhhcccchHhHHHHHHhcCCCCchhhHHHHHHhhhhhHHHHHHhhHHHhhhcc--CchHHHHHHHHHHHHHHHHH
Q 014481          209 SRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENL--GWESVFYIFGLLGIAWFSGF  286 (423)
Q Consensus       209 ~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~--gw~~~~~~~~~~~~~~~~~~  286 (423)
                      .|++.|++.+...+....++.++++ ++|++++++++...++|..+++.+++.+.+..  +||+.|.+.+++.++..+  
T Consensus        93 ~~~~~g~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~~~w~~~f~~~~~~~~~~~~--  169 (355)
T TIGR00896        93 GTALIGVGIAIINVLLPSLIKRDFP-QRVGLMTGLYSMALMGGAALAAAATVPLAQHSGGHWQQALAWWALPALLALL--  169 (355)
T ss_pred             HHHHHHHHHHHHhccchHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH--
Confidence            9999999998887788888899886 68999999999999999999999999888764  399988877665443322  


Q ss_pred             HhhccCCcCcCCCCCcchhhhhhhhhhhhhHHhhccccCCCcHHHhhhcHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHh
Q 014481          287 KILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEE  366 (423)
Q Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  366 (423)
                      .++++.++++..+. +                     ......++++|+|.++...+..++....++....++|.|+++ 
T Consensus       170 ~~~~~~~~~~~~~~-~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~-  226 (355)
T TIGR00896       170 AWIPQVRRRVAANQ-T---------------------TTRLTPVRIWRSPLAWQVTVFFGLQSGLYYSLIGWLPAILIS-  226 (355)
T ss_pred             HHhhhhccccCCCC-C---------------------CCCCCCchhhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence            23333222111000 0                     001124567889999888777777777888888999999986 


Q ss_pred             hCCChhhHHHHHHHHHHHHHHHHHHHHHHhHHhhhcC
Q 014481          367 LSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATG  403 (423)
Q Consensus       367 ~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~r~  403 (423)
                      +|++..+++.+.+...++.++++++.|++.||+++|+
T Consensus       227 ~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~  263 (355)
T TIGR00896       227 HGASAATAGSLLALMQLAQAASALLIPALARRVKDQR  263 (355)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccch
Confidence            6999999999999999999999999999999996543

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.94  E-value=2.9e-24  Score=204.41  Aligned_cols=259  Identities=18%  Similarity=0.136  Sum_probs=195.3

Q ss_pred             HHHHHHHHHHHHHHHhhhhhhhhhHHH-hhhhhCCCcchhhHHHHHHHHHHHhhhhhhhhHhhHhcCchHHHHHHHHHHH
Q 014481          113 YKLIGTTSLAFVICNMDKVNLSVAIIP-MSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSL  191 (423)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~  191 (423)
                      ++.+..+.+..++..++..+..+.+|. +.+++|.++.+.|++.+++.+++.+++++.|+++||+|||++++.+.+++++
T Consensus        14 ~~~~~~l~~~~~~~~~~~~~~~~~l~~~i~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~   93 (399)
T PRK05122         14 TLRIVSIVMFTFISYLTIGLPLAVLPGYVHDQLGFSAFLAGLVISLQYLATLLSRPHAGRYADTLGPKKAVVFGLCGCAL   93 (399)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHhchhhHhHHhccCCcchHHHHHHHHHH
Confidence            355667778888888888888889887 6788999999999999999999999999999999999999999999988777


Q ss_pred             HHHHHHHh--h-----hHHHHHHHHHHHHHhhcccchHhHHHHHHhcCCCCchhhHHHHHHhhhhhHHHHHHhhHHHhhh
Q 014481          192 ATALLPLL--A-----GFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIE  264 (423)
Q Consensus       192 ~~~~~~~~--~-----~~~~~~~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~  264 (423)
                      +.+++...  .     .+++.+++.|+++|++.+...+...+++.+++|+++|++++++...+..+|.++|+.+++.+.+
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~  173 (399)
T PRK05122         94 SGLLYLLAGLLAAWPVLSLLLLLLGRLLLGIGESLAGTGSILWGIGRVGALHTGRVISWNGIATYGALAIGAPLGVLLYH  173 (399)
T ss_pred             HHHHHHHhhhhhccchhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhhhccchhhhhhhhhHHHHHHHHHHHHHHH
Confidence            65544222  1     2456789999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCchHHHHHHHHHHHHHHHHHHhhccCCcCcCCCCCcchhhhhhhhhhhhhHHhhccccCCCcHHHhhhcHHHHHHHHH
Q 014481          265 NLGWESVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYA  344 (423)
Q Consensus       265 ~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  344 (423)
                      ..||++.+++.+++.++..+.....++.++   .+   +++                     .++++.++  .++.....
T Consensus       174 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~---~~~---------------------~~~~~~~~--~~~~~~~~  224 (399)
T PRK05122        174 WGGLAGLGLLIMLLALLGLLLARPRPAVPP---VK---GER---------------------LPFRRVLG--RVWPYGMG  224 (399)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHhcCCCCCC---CC---ccc---------------------hhHHHHHH--HHHHHHHH
Confidence            999999888766655443322221111110   00   000                     01222222  12222223


Q ss_pred             HHHHHHHHHHHHhhhhHHHHHhhCCChhhHHHHHHHHHHHHHHHHHHHHHHhHHhhhcC
Q 014481          345 HFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATG  403 (423)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~r~  403 (423)
                      .++....+.....+++.|+.+ .|+  .+.+.......++.++++++.|++.||+++|+
T Consensus       225 ~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~  280 (399)
T PRK05122        225 LALASIGFGTIATFITLYYAA-RGW--DGAALALTLFGVAFVGARLLFGNLINRLGGLR  280 (399)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-ccc--ccchHHHHHHHHHHHHHHHHHHHHHHHhccHH
Confidence            334445556667788888875 466  34566677888899999999999999998774

>PRK12382 putative transporter; Provisional

Probab=99.93  E-value=7.4e-24  Score=201.11  Aligned_cols=258  Identities=16%  Similarity=0.143  Sum_probs=186.8

Q ss_pred             HHHHHHHHHHHHHhhhhhhhhhHHH-hhhhhCCCcchhhHHHHHHHHHHHhhhhhhhhHhhHhcCchHHHHHHHHHHHHH
Q 014481          115 LIGTTSLAFVICNMDKVNLSVAIIP-MSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLAT  193 (423)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~  193 (423)
                      .+..+.++.++..+......+.+|. +.+++|.|..++|++.+++.+++.++++++|+++||+|||++++++.++..++.
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~p~l~~~l~~~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~   95 (392)
T PRK12382         16 SLFRIAFAVFLTYMTVGLPLPVIPLFVHHDLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQYGAKRSALQGMLACGLAG   95 (392)
T ss_pred             cHHHHHHHHHHHHHHHHHHhhhhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHHH
Confidence            3444555666667777788888886 578999999999999999999999999999999999999999999887766654


Q ss_pred             HHHHH-------hhhHHHHHHHHHHHHHhhcccchHhHHHHHHhcCCCCchhhHHHHHHhhhhhHHHHHHhhHHHhhhcc
Q 014481          194 ALLPL-------LAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENL  266 (423)
Q Consensus       194 ~~~~~-------~~~~~~~~~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~  266 (423)
                      +....       ...+++.++++|+++|++.+...+...+++.+++|+++|++++++++.+..+|..+||++++.+.+..
T Consensus        96 ~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~~l~~~~  175 (392)
T PRK12382         96 LAYLLAAILPVSAPFKFALLVVGRLILGFGESQLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPLGLLLHSHF  175 (392)
T ss_pred             HHHHhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccchhhhHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            32211       13567889999999999999888888899999999999999999999999999999999999999989


Q ss_pred             CchHHHHHHHHHHHHHHHHHHhhccCCcCcCCCCCcchhhhhhhhhhhhhHHhhccccCCCcHHHhhhcHHHHHHHHHHH
Q 014481          267 GWESVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHF  346 (423)
Q Consensus       267 gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  346 (423)
                      ||++.+.+..+..++........++.+++   +  +++      .                ++++.++  .++...+..+
T Consensus       176 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~--~~~------~----------------~~~~~~~--~~~~~~~~~~  226 (392)
T PRK12382        176 GFAALALTTMVLPLLAWAFNGTVRKVPAH---A--GER------P----------------SLWSVVG--LIWKPGLGLA  226 (392)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHhccCCCCC---c--ccC------c----------------hHHHHHH--HHHHhHHHHH
Confidence            99987766544433332222112221110   0  000      0                0111111  1222222223


Q ss_pred             HHHHHHHHHHhhhhHHHHHhhCCChhhHHHHHHHHHHHHHHHHHHHHHHhHHhhhcCC
Q 014481          347 CGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGV  404 (423)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~r~~  404 (423)
                      +..........+.+.|+++ .|++.  .++......++.++++++.|++.||+++|+.
T Consensus       227 l~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~  281 (392)
T PRK12382        227 LQGVGFAVIGTFVSLYFAS-KGWAM--AGFTLTAFGGAFVLMRVLFGWMPDRFGGVKV  281 (392)
T ss_pred             HHHHHHhHHHHHHHHHHHh-cCCch--hHHHHHHHHHHHHHHHHHHHHHHHhcCCCee
Confidence            3344555666788888876 46653  4566667778889999999999999998754

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.93  E-value=7.9e-24  Score=197.53  Aligned_cols=240  Identities=33%  Similarity=0.525  Sum_probs=216.6

Q ss_pred             HHHHHHHHHHhhhhhhhhhHHHhhhhhCCCcchhhHHHHHHHHHHHhhhhhhhhHhhHhcCchHHHHHHHHHHHHHHHHH
Q 014481          118 TTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLP  197 (423)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~  197 (423)
                      .+.+..+...+......+..|.+.+++|.+..+.+++.+...++..++.++.|+++||+|||+.+.++.++..++.++. 
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~g~r~~~~~~~~~~~~~~~~~-   81 (352)
T cd06174           3 LLFLGFFLSGLDRGLLSPALPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLL-   81 (352)
T ss_pred             HHHHHHHHHHHhhhhhHhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchhhHHHHHHHHHHHHHH-
Confidence            3455667777888888999999999999999999999999999999999999999999999999999999998888777 


Q ss_pred             HhhhHHHHHHHHHHHHHhhcccchHhHHHHHHhcCCCCchhhHHHHHHhhhhhHHHHHHhhHHHhhhccCchHHHHHHHH
Q 014481          198 LLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGL  277 (423)
Q Consensus       198 ~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw~~~~~~~~~  277 (423)
                      ...++++.++++|++.|++.+...+...+++.|++|+++|++++++.+....+|..++|.+++.+.+..+|++.+++.++
T Consensus        82 ~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (352)
T cd06174          82 AFASSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAI  161 (352)
T ss_pred             HHhccHHHHHHHHHHHHcccccccHhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence            45577899999999999999999999999999999999999999999999999999999999999999899999999888


Q ss_pred             HHHHHHHHHHhhccCCcCcCCCCCcchhhhhhhhhhhhhHHhhccccCCCcHHHhhhcHHHHHHHHHHHHHHHHHHHHHh
Q 014481          278 LGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLS  357 (423)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  357 (423)
                      +.++..+...+++                                             |.++...+..++..........
T Consensus       162 ~~~~~~~~~~~~~---------------------------------------------~~~~~~~~~~~~~~~~~~~~~~  196 (352)
T cd06174         162 LGLLLALLLLFLL---------------------------------------------RLLLLLALAFFLLSFGYYGLLT  196 (352)
T ss_pred             HHHHHHHHHHHHH---------------------------------------------HHHHHHHHHHHHHHhHHHHHHH
Confidence            8777666555543                                             4567777788888888889999


Q ss_pred             hhhHHHHHhhCCChhhHHHHHHHHHHHHHHHHHHHHHHhHHhhhcC
Q 014481          358 WLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATG  403 (423)
Q Consensus       358 ~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~r~  403 (423)
                      +.|.+..+.+|.+..+.+.......++.+++.++.+++.||+++|+
T Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~  242 (352)
T cd06174         197 YLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRR  242 (352)
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            9999999877999999999999999999999999999999999885

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.93  E-value=2.3e-24  Score=206.24  Aligned_cols=264  Identities=14%  Similarity=0.031  Sum_probs=207.2

Q ss_pred             HHHHHHHHHhhhhhhhhhHHHhhhhhCCCcchhhHHHHHHHHHHHhhhhhhhhHhhHhcCchHHHHHHHHHHHHHHHHHH
Q 014481          119 TSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPL  198 (423)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~  198 (423)
                      +.+..++..+......+.+|.+.++++.++.+.|++.+.+.++..+++++.|+++||+|||+++.++.++.+++.+....
T Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~~~~~~~~~~~~~~~~  101 (417)
T PRK10489         22 VFIARFISIFGLGLLGVAVPVQIQMMTGSTLQVGLSVTLTGGAMFIGLMVGGVLADRYDRKKLILLARGTCGLGFIGLAL  101 (417)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCceEEEehHHHHHHHHHHHHH
Confidence            34445566667777788889988899999999999999999999999999999999999999999988777766554422


Q ss_pred             ----hhhHHHHHHHHHHHHHhhcccchHhHHHHHHhcCCCCchhhHHHHHHhhhhhHHHHHHhhHHHhhhccCchHHHHH
Q 014481          199 ----LAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYI  274 (423)
Q Consensus       199 ----~~~~~~~~~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw~~~~~~  274 (423)
                          ..++++.+++.|++.|++.+...+...+++.+++|+++|+++.++.....++|..+||.+++.+.+..||++.|++
T Consensus       102 ~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~~~~~~~~~~~  181 (417)
T PRK10489        102 NAFLPEPSLLAIYLLGLWDGFFGSLGVTALLAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLLIAAGGVAWNYGL  181 (417)
T ss_pred             HHHcCCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHhhHHHHHH
Confidence                1456788889999999998888888899999999999999999999999999999999999999998899999998


Q ss_pred             HHHHHHHHHHHHHhhccCCcCcCCCCCcchhhhhhhhhhhhhHHhhccccCCCcHHHhhhcHHHHHHHHHHHHHHHHHHH
Q 014481          275 FGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYT  354 (423)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  354 (423)
                      .++..++..+..+.+|+.+++...+   ++..    +.    .        ...++.++++|.++...+..++... ...
T Consensus       182 ~~~~~~~~~~~~~~l~~~~~~~~~~---~~~~----~~----~--------~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  241 (417)
T PRK10489        182 AAAGTFITLLPLLRLPALPPPPQPR---EHPL----RS----L--------LAGFRFLLASPVVGGIALLGGLLTM-ASA  241 (417)
T ss_pred             HHHHHHHHHHHHHhCCCCCCCCccc---ccch----HH----H--------HHHHHHHHcChHHHHHHHHHHHHHH-HHh
Confidence            8877776666666666543321110   0000    00    0        0124567788887666555444333 356


Q ss_pred             HHhhhhHHHHHhhCCChhhHHHHHHHHHHHHHHHHHHHHHHhHHhhhc
Q 014481          355 CLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIAT  402 (423)
Q Consensus       355 ~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~r  402 (423)
                      ...++|.|+++.+|+++...+++.+...++.+++.++.+++.||.+++
T Consensus       242 ~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~  289 (417)
T PRK10489        242 VRVLYPALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSARPG  289 (417)
T ss_pred             HHHhhHHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhccCcc
Confidence            677899999987899999999999999999999999999999985443

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.93  E-value=1e-23  Score=199.24  Aligned_cols=262  Identities=11%  Similarity=-0.034  Sum_probs=203.5

Q ss_pred             HHHHHHHHHhhhhhhhhhHHHhhhhhCCCcchhhHHHHHHHHHHHhhhhhhhhHhhHhcCchHHHHHHH-HHHHHHHHHH
Q 014481          119 TSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVL-IWSLATALLP  197 (423)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~-~~~~~~~~~~  197 (423)
                      +.+.++..++......|++|.+.+++|.+..++|++.+++.+...++++++|+++||+||+........ ...+..+...
T Consensus         9 l~~~~~~~~~~~~~~~p~l~~~l~~~g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~l~~~~~~   88 (382)
T TIGR00902         9 LALGFFGYFCAYGIFLPFFPAWLKGIGLGEEMIGLLIGAALIARFAGGLFFAPLIKDANHIIIALRLLALASAIFAAAFS   88 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHH
Confidence            556667777777889999999999999999999999999999999999999999999998543322211 1112222222


Q ss_pred             HhhhHHHHHHHHHHHHHhhcccchHhHHHHHHhcCCCCchhhHHHHHHhhhhhHHHHHHhhHHHhhhccCchHHHHHHHH
Q 014481          198 LLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGL  277 (423)
Q Consensus       198 ~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw~~~~~~~~~  277 (423)
                      ..+++++.+++.|+++|.+.+...|...++..++  .++|++++|....+.++|.++||++++.+.+.+|||..|++.++
T Consensus        89 ~~~~~~~~l~~~~~l~~~~~~~~~p~~~al~~~~--~~~~~~~~g~~~~~~slG~~~g~~l~g~l~~~~g~~~~f~~~~~  166 (382)
T TIGR00902        89 AGAHNAWLLFIAIGLFALFFSAGMPIGDALANTW--QKQFGLDYGKVRLIGSAAFIIGSALFGGLIGMFDEQNILAILTA  166 (382)
T ss_pred             HhhhhHHHHHHHHHHHHHHHccchhHHHHHHHHH--HHHcCCCccHHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHH
Confidence            3567789999999999999888889888887664  37889999999999999999999999999999999999988765


Q ss_pred             HHHHHHHHHHhhccCCcCcCCCCCcchhhhhhhhhhhhhHHhhccccCCCcHHHhhhcHHHHHHHHHHHHHHHHHHHHHh
Q 014481          278 LGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLS  357 (423)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  357 (423)
                      ..++.+ ..+.++++.++++++. +++                  ..+...+++++|+|.+|.+.+..++...+......
T Consensus       167 ~~~~~~-~~~~~~~~~~~~~~~~-~~~------------------~~~~~~~~~~l~~~~~~~~l~~~~l~~~~~~~~~~  226 (382)
T TIGR00902       167 GLAFML-IGFLIKPTIPPKDAIP-EDE------------------SQGDSAFIALLKNPMNLRFLAAVCLIQGAHAAYYG  226 (382)
T ss_pred             HHHHHH-HHHHcCCCCCCCcccc-ccc------------------cccchhHHHHHcChHHHHHHHHHHHHHHHHHHHHH
Confidence            533333 3333333322111100 000                  00111357889999999999988888888989999


Q ss_pred             hhhHHHHHhhCCChhhHHHHHHHHHHHHHHHHHHHHHHhHHhhhcC
Q 014481          358 WLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATG  403 (423)
Q Consensus       358 ~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~r~  403 (423)
                      +.|.|+++ .|.++.+.|.+..+..++.+++..+.+++.||++.|+
T Consensus       227 ~~~~~l~~-~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~  271 (382)
T TIGR00902       227 FSAIYWQA-AGISASATGLLWGIGVLAEIIIFAFSNKLFQNCSARD  271 (382)
T ss_pred             HHHHHHHH-CCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHH
Confidence            99999987 7999999999999999999999999999999999874

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.93  E-value=5e-23  Score=196.54  Aligned_cols=266  Identities=17%  Similarity=0.145  Sum_probs=198.8

Q ss_pred             HHHHHHHHHHHHHhhhhhhhhhHHHhhhhhCCCcch-----hhHHHHHHHHHHHhhhhhhhhHhhHhcCchHHHHHHHHH
Q 014481          115 LIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSV-----AGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIW  189 (423)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~-----~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~  189 (423)
                      ....++++.++..+......+.+|.+.+++|.+..+     .|++.+++.++..++.+++|+++||+|||++++.+.++.
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~   94 (408)
T PRK09874         15 NLTVAWLGCFLTGAAFSLVMPFLPLYVEQLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRKGRKIMLLRSALGM   94 (408)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhHHHHHHHhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCcHHHHHHHHHHH
Confidence            344556677777788888889999999999988655     488999999999999999999999999999999998888


Q ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHHhhcccchHhHHHHHHhcCCCCchhhHHHHHHhhhhhHHHHHHhhHHHhhhccCch
Q 014481          190 SLATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWE  269 (423)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw~  269 (423)
                      +++.+++ ...++++.+++.|++.|++.+ ..+....++.+++|+++|++++++......+|..++|.+++.+.+..+|+
T Consensus        95 ~~~~~~~-~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~  172 (408)
T PRK09874         95 GIVMVLM-GLAQNIWQFLILRALLGLLGG-FVPNANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAGGLLADSYGLR  172 (408)
T ss_pred             HHHHHHH-HHHhhHHHHHHHHHHHHHhhh-hHHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHH
Confidence            8887666 456778899999999999855 56777889999999999999999999999999999999999999989999


Q ss_pred             HHHHHHHHHHHHHHHHHH-hhccCCcCcCCCCCcchhhhhhhhhhhhhHHhhccccCCCcHHHhhhcHHHHHH-HHHHHH
Q 014481          270 SVFYIFGLLGIAWFSGFK-ILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAM-IYAHFC  347 (423)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~  347 (423)
                      +.|++.+++.++..+..+ ++++++++.+++   +.  ..        ..         ...+.++++.++.. .+..+.
T Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~--~~--------~~---------~~~~~~~~~~~~~~~~~~~~~  230 (408)
T PRK09874        173 PVFFITASVLFLCFLVTLFCIRENFQPVSKK---EM--LH--------MR---------EVVTSLKNPKLVLSLFVTTLI  230 (408)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccCcccccch---hh--hH--------HH---------HHHHhCcCCchHHHHHHHHHH
Confidence            999998888766554443 444432211110   00  00        00         01234566665543 333334


Q ss_pred             HHHHHHHHHhhhhHHHHHhhCCChh---hHHHHHHHHHHHHHHHHHHHHHHhHHhhhcCC
Q 014481          348 GSWGHYTCLSWLPTYFSEELSLNLT---EAAWVSILPPLASVLVTSIAAQFADNLIATGV  404 (423)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~g~s~~---~~~~~~~~~~~~~~~~~~~~g~l~dr~~~r~~  404 (423)
                      ..........+++.|..+..+....   ..+.+..+.+++.+++.++.|++.||+++|+.
T Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~  290 (408)
T PRK09874        231 IQVATGSIAPILTLYVRELAGNVSNIAFISGMIASVPGVAALLSAPRLGKLGDRIGPEKI  290 (408)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchh
Confidence            4445555667788888765332221   24556667778888999999999999998754

>PRK11010 ampG muropeptide transporter; Validated

Probab=99.93  E-value=2.8e-23  Score=201.70  Aligned_cols=268  Identities=15%  Similarity=0.166  Sum_probs=205.3

Q ss_pred             HHHHHHHHHHHHhhhhhhhhhHHHhhhhhCCCcchhhHHHHHHHHHHHhhhhhhhhHhhHh-----cCchH-HHHHHHHH
Q 014481          116 IGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIF-----GGRKV-LQTGVLIW  189 (423)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-----G~r~~-~~~~~~~~  189 (423)
                      ...+++..+..+.........+|...++.|.+..++|.+ +.....+ ++.+++|+++||+     |||+. ++++.++.
T Consensus        14 ~~~~~~l~~~~gl~~~~~~~~l~~~l~~~g~~~~~ig~~-~~~~~~~-~~~~l~gpl~Dr~~~~~~Grrr~~ll~~~i~~   91 (491)
T PRK11010         14 SAILLILGFASGLPLALTSGTLQAWMTVENIDLKTIGFF-SLVGQAY-VFKFLWSPLMDRYTPPFLGRRRGWLLATQLLL   91 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHH-HHHHHHH-HHHHHHHHHHHcccccCCCCchHHHHHHHHHH
Confidence            334555566677777788888999999999999999987 4444444 5889999999999     99986 55666666


Q ss_pred             HHHHHHHHHhh--hHHHHHHHHHHHHHhhcccchHhHHHHHHhcCCCCchhhHHHHHHhhhhhHHHHHHhhHHHhhh-cc
Q 014481          190 SLATALLPLLA--GFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIE-NL  266 (423)
Q Consensus       190 ~~~~~~~~~~~--~~~~~~~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~-~~  266 (423)
                      +++...+++..  ++++.+.+.+++.|++.+...+...+++.|++|+++|+++.++...+..+|.++++.+++++.+ ..
T Consensus        92 ~~~~~~~a~~~~~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~llg~~l~~~l~~~~~  171 (491)
T PRK11010         92 LVAIAAMGFLEPGTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLAMLVSGGLALWLADRYL  171 (491)
T ss_pred             HHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            66655554432  4667888899999999999999999999999999999999999999999999999999999998 57


Q ss_pred             CchHHHHHHHHHHHHHHHHHHhhccCCcCcCCCCCcchhhhhhhhhhhhhHHhhccccCCCcHHHhhhcHHHHHHHHHHH
Q 014481          267 GWESVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHF  346 (423)
Q Consensus       267 gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  346 (423)
                      |||..|++.+++.++..+..++.+|+++....   ++ ..   .+.            ...+++++++++..|...+..+
T Consensus       172 GWr~~f~i~a~l~ll~~l~~~~~~e~~~~~~~---~~-~~---~~~------------~~~~l~~~~~~~~~~~~ll~~~  232 (491)
T PRK11010        172 GWQGMYWLMAALLIPCIIATLLAPEPTDTIPV---PK-TL---EQA------------VVAPLRDFFGRNNAWLILLLIV  232 (491)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHhcCCCcccccc---cc-ch---hhh------------HHHHHHHHHcCcCHHHHHHHHH
Confidence            99999999998877766655556554321100   00 00   000            0013567777777777666666


Q ss_pred             HHHHHHHHHHhhhhHHHHHhhCCChhhHHHHHH-HHHHHHHHHHHHHHHHhHHhhhcCC
Q 014481          347 CGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSI-LPPLASVLVTSIAAQFADNLIATGV  404 (423)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~-~~~~~~~~~~~~~g~l~dr~~~r~~  404 (423)
                      +..........+.+.|+.+.+|++..+.+.+.. ...++.+++.+++|++.||+++|+.
T Consensus       233 l~~~~~~~~~~~~~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~  291 (491)
T PRK11010        233 LYKLGDAFAMSLTTTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLFRA  291 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence            666666777778888887778999999999874 5568999999999999999998753

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=99.92  E-value=3.7e-23  Score=195.48  Aligned_cols=256  Identities=14%  Similarity=0.059  Sum_probs=197.6

Q ss_pred             HHHHHhhhhhhhhhHHHhhhhhCCCcchhhHHHHHHHHHHHhhhhhhhhHhhHhcCc----hHHHHHHHHHHHHHHHHHH
Q 014481          123 FVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGR----KVLQTGVLIWSLATALLPL  198 (423)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r----~~~~~~~~~~~~~~~~~~~  198 (423)
                      ++..........+.+|.+.+++|.|..++|++.+++.++..++++++|+++||+|||    +.+.++..+.   .+....
T Consensus        13 ~~~~~~~~g~~~p~l~~~l~~~g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~g~~~~~~~~~~~~~~~~---~~~~~~   89 (382)
T PRK11128         13 YFGYFFAYGVFLPFWSVWLKGQGYTPETIGLLLGAGLVARFLGSLLIAPRVKDPSQLIPALRLLALLTLLF---AVAFWF   89 (382)
T ss_pred             HHHHHHHHHHHhhhHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcchHHHHHHHHHHHHHH---HHHHHH
Confidence            445556678888999999999999999999999999999999999999999999994    3333222221   122223


Q ss_pred             hhhHHHHHHHHHHHHHhhcccchHhHHHHHHhcCCCCchhhHHHHHHhhhhhHHHHHHhhHHHhhhccCchHHHHHHHHH
Q 014481          199 LAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLL  278 (423)
Q Consensus       199 ~~~~~~~~~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw~~~~~~~~~~  278 (423)
                      ..++++.+++.|++.|++.+...+...+++.++  .++|+++++......++|..+||++++++.+++|||..|++.++.
T Consensus        90 ~~~~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~--~~~~~~a~~~~~~~~~lg~~igp~lgg~l~~~~g~~~~f~~~~~~  167 (382)
T PRK11128         90 GAHSFWLLFVAIGLFNLFFSPLVPLTDALANTW--QKQIGLDYGKVRLWGSIAFVIGSALTGKLVSWFGEQAILWILTAG  167 (382)
T ss_pred             hcccHHHHHHHHHHHHHHHcccccHHHHHHHHH--HhhccCCcchHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHH
Confidence            457788888999999999888888888888876  357888899999999999999999999999999999999987765


Q ss_pred             HHHHHHHHHhhccCCcCcCCCCCcchhhhhhhhhhhhhHHhhccccCCCcHHHhhhcHHHHHHHHHHHHHHHHHHHHHhh
Q 014481          279 GIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLSW  358 (423)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  358 (423)
                      .++..+..++.++++++. ++   ++.                ......++++++|+|.+|...+..++..........+
T Consensus       168 ~~~~~~~~~~~~~~~~~~-~~---~~~----------------~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~~  227 (382)
T PRK11128        168 VASMLLGQLLRPTIMPQG-ES---RQQ----------------ESAGWPAWKALLKEPTVWRFLLCVSLLQGSHAAYYGF  227 (382)
T ss_pred             HHHHHHHHHccCCCCCcc-cc---ccc----------------cccccchHHHHHcChhHHHHHHHHHHHHHHhHhHHHH
Confidence            554443333333321111 00   000                0001124688999999998888888777777778888


Q ss_pred             hhHHHHHhhCCChhhHHHHHHHHHHHHHHHHHHHHHHhHHhhhcCC
Q 014481          359 LPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGV  404 (423)
Q Consensus       359 ~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~r~~  404 (423)
                      .|.|+++ .|++..+.+.+.+...++.++..++.+++.||+++|+.
T Consensus       228 ~~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~  272 (382)
T PRK11128        228 SAIYWQA-AGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARDL  272 (382)
T ss_pred             HHHHHHH-CCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH
Confidence            8999976 79999999999998889999999999999999998854

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=99.92  E-value=7.8e-23  Score=194.09  Aligned_cols=253  Identities=17%  Similarity=0.167  Sum_probs=193.8

Q ss_pred             HHHHHHHHHhhhhhhhhhHHH-hhhhhCCCcchhhHHHHHHHHHHHhhhhhhhhHhhHhcCchHHHHHHHHHHHHHHHHH
Q 014481          119 TSLAFVICNMDKVNLSVAIIP-MSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLP  197 (423)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~  197 (423)
                      +....++.........++++. +.+++|++..++|++.+...++..+.+++.|+++||+|||++++++.++.+++.+++ 
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~-   93 (400)
T PRK11646         15 LLIDNMLVVLGFFVVFPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATM-   93 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHH-
Confidence            334455555555666666655 678899999999999999999999999999999999999999999999999988777 


Q ss_pred             HhhhHHHHHHHHHHHHHhhcccchHhHHHHHHhcCCCCchhhHHHHHHhhhhhHHHHHHhhHHHhhhccCchHHHHHHHH
Q 014481          198 LLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGL  277 (423)
Q Consensus       198 ~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw~~~~~~~~~  277 (423)
                      ...++++.+++.|++.|++.+...+...+++.+++|+++|++++|+.....++|..+||++++.+. ..||++.|++.++
T Consensus        94 ~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~-~~g~~~~f~~~~~  172 (400)
T PRK11646         94 AIAHEPWLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLL-QYDFRLVCATGAV  172 (400)
T ss_pred             HHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHH
Confidence            456778889999999999998888999999999999999999999999999999999999999998 6799999999887


Q ss_pred             HHHHHHHH-HHhhccCCcCcCCCCCcchhhhhhhhhhhhhHHhhccccCCCcHHHhhhcHHHHHHHHHHHHHHHHHHHHH
Q 014481          278 LGIAWFSG-FKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCL  356 (423)
Q Consensus       278 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  356 (423)
                      ..++..+. .++.++.++.  .   .++       .            ....+++++++|.++...+..+..........
T Consensus       173 ~~~~~~i~~~~~~~~~~~~--~---~~~-------~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (400)
T PRK11646        173 LFVLAAAFNAWLLPAYKLS--T---VRT-------P------------VREGMTRVLRDKRFVTYVLTLTGYYMLAVQVM  228 (400)
T ss_pred             HHHHHHHHHHHhCCccccc--c---cch-------h------------hHHHHHHHHcCchHHHHHHHHHHHHHHHHHHH
Confidence            76665433 3333332110  0   000       0            00125677888888776665555444444456


Q ss_pred             hhhhHHHHHhhCCChhhHHHHHHHHHHHHHHHHHHHHHHhHH
Q 014481          357 SWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADN  398 (423)
Q Consensus       357 ~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr  398 (423)
                      .++|.|+++. +.++.+.+.+.++..++.+++....+++.||
T Consensus       229 ~~~p~~~~~~-~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~  269 (400)
T PRK11646        229 LMLPIMVNDI-AGSPSAVKWMYAIEACLSLTLLYPIARWSEK  269 (400)
T ss_pred             HhhhhhHHhh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7889999875 4467788888888777776666555666654

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.92  E-value=1.9e-23  Score=198.23  Aligned_cols=260  Identities=19%  Similarity=0.205  Sum_probs=196.6

Q ss_pred             HHHHhhhhhhhhhHHHhhhhhC--CCcchhhHHHHH-----HHHHHHhhhhhhhhHhhHhcCchHHHHHHHHHHHHHHHH
Q 014481          124 VICNMDKVNLSVAIIPMSHRFG--WNSSVAGLVQSS-----FFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALL  196 (423)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~--~s~~~~~~~~~~-----~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~  196 (423)
                      +.++++...++...+.+.+++.  .++.+.+.+.+.     ..++..+++++.|+++||+|||++++++.++.+++.+++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~   82 (394)
T TIGR00883         3 AVEWFDFYLYGFAAVLVFHTFFPPSGDPLVALLATFATFAAGFLARPLGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLI   82 (394)
T ss_pred             chhHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence            3556777777777777666643  445556655543     333445688999999999999999999999998888777


Q ss_pred             HHhhhHHH--------HHHHHHHHHHhhcccchHhHHHHHHhcCCCCchhhHHHHHHhhhhhHHHHHHhhHHHhh-----
Q 014481          197 PLLAGFMP--------GLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPII-----  263 (423)
Q Consensus       197 ~~~~~~~~--------~~~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~-----  263 (423)
                      . ..++++        .++++|+++|++.+...+....++.|++++++|+++.++...+..+|.++++.++..+.     
T Consensus        83 ~-~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~  161 (394)
T TIGR00883        83 G-LLPSYATIGIWAPILLLLARLIQGFSLGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYLLGD  161 (394)
T ss_pred             h-hCCChhhhHHHHHHHHHHHHHHHHhhccccccccHHHhhhcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCH
Confidence            4 444433        57889999999999999999999999999999999999999999999999998877654     


Q ss_pred             ---hccCchHHHHHHHHHHHHHHHHHHhhccCCcCcCCCCCcchhhhhhhhhhhhhHHhhccccCCCcHHHhhhcHH--H
Q 014481          264 ---ENLGWESVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKA--V  338 (423)
Q Consensus       264 ---~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~  338 (423)
                         +..+||+.|++.+++.++..+.....+|+++.+..+.                    +++....++++.++++.  +
T Consensus       162 ~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~  221 (394)
T TIGR00883       162 DALLEWGWRIPFLVSAVLVLIGLYLRRNLEETPVFEKAQE--------------------KHKKKRGPIRETLTKHRKPF  221 (394)
T ss_pred             HHhhccchHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHh--------------------ccccccCCHHHHHHhchHHH
Confidence               3568999998877766555444444444332111000                    00111223556666655  6


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhHHHHHhhCCChhhHHHHHHHHHHHHHHHHHHHHHHhHHhhhcCC
Q 014481          339 WAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGV  404 (423)
Q Consensus       339 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~r~~  404 (423)
                      +...+..++.....+....++|.|+++.+|.++.+.+.+.....++.+++.++.|++.||+++|+.
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~  287 (394)
T TIGR00883       222 LLGLGLVIATTTTFYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRIGRRPV  287 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHH
Confidence            666777777777778888999999988889999999999999999999999999999999998853

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>PRK10054 putative transporter; Provisional

Probab=99.92  E-value=1.6e-23  Score=198.53  Aligned_cols=264  Identities=11%  Similarity=0.067  Sum_probs=203.5

Q ss_pred             HHHHHHHHHHHHhhhhhhhhhHHH-hhhhhCCCcchhhHHHHHHHHHHHhhhhhhhhHhhHhcCchHHHHHHHHHHHHHH
Q 014481          116 IGTTSLAFVICNMDKVNLSVAIIP-MSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATA  194 (423)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~  194 (423)
                      +..+.+..++.........+.++. +.+++|++..++|++.+++.++..+++++.|+++||+|||++++++.++.+++.+
T Consensus         9 ~~~l~~~~~~~~~g~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~   88 (395)
T PRK10054          9 TSALLASSLLLTIGRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGFI   88 (395)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHH
Confidence            334555666667777777777665 6678999999999999999999999999999999999999999999988888776


Q ss_pred             HHHHhhhHHHHHHHHHHHHHhhcccchHhHHHHHHhcCCCCchhhHHHHHHhhhhhHHHHHHhhHHHhhhccCchHHHHH
Q 014481          195 LLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYI  274 (423)
Q Consensus       195 ~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw~~~~~~  274 (423)
                      ++ .+.++++.+++++++.|.+.+...+...++..|.+|+++|++++++.+...++|..+||++++.+.+ .+|+..|++
T Consensus        89 ~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~-~g~~~~f~~  166 (395)
T PRK10054         89 AI-PLVNNVTLVVLFFALINCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVM-QSINLPFWL  166 (395)
T ss_pred             HH-HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccCcHHHH
Confidence            66 4567778888888888888777788889999999999999999999999999999999999999875 699999998


Q ss_pred             HHHHHHHHHHHH-HhhccCCcCcCCCCCcchhhhhhhhhhhhhHHhhccccCCCcHHHhhhcHHHHHHHHHHHHHHHHHH
Q 014481          275 FGLLGIAWFSGF-KILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHY  353 (423)
Q Consensus       275 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  353 (423)
                      .+++.++.++.. +++++++++++.+   ++      +              ....++.+++|.++...+..++..+...
T Consensus       167 ~~~~~~i~~i~~~~~~~~~~~~~~~~---~~------~--------------~~~~~~~~~~~~~~~~~~~~~l~~~~~~  223 (395)
T PRK10054        167 AAICSAFPLVFIQIWVQRSEKAIATE---TG------S--------------VWSPSVLLQDKALLWFTCSGFLASFVSG  223 (395)
T ss_pred             HHHHHHHHHHHHHHHHhccccccccc---hh------h--------------hhhhhhhccCceehHHHHHHHHHHHHHH
Confidence            888776654433 3455443221100   00      0              0012567889999888877777777666


Q ss_pred             HHHhhhhHHHHHh--hCCChhhHHHHHHHHHHHHHHHHHHHHHHhHHhhhcCC
Q 014481          354 TCLSWLPTYFSEE--LSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGV  404 (423)
Q Consensus       354 ~~~~~~~~~~~~~--~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~r~~  404 (423)
                      ....+.+.|....  .+.+....+.+.....+..+......|++.||.++|+.
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  276 (395)
T PRK10054        224 AFASCISQYVMVVADSDFAEKVVAVVLPVNAAMVVSLQYSVGRRLNAANIRPL  276 (395)
T ss_pred             HhhhhHHHHHHHhcccchHHHHHHHHHHhhhhheeeehhHHHHHHccCCchhH
Confidence            6666777776533  35556666777777777777777888999999887743

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=99.92  E-value=1.8e-23  Score=200.58  Aligned_cols=288  Identities=18%  Similarity=0.219  Sum_probs=227.3

Q ss_pred             hHHHHHHHHHHHHHHHhhhhhhhhhHHHhhhhhCCCcchhhHHHHHHHHHHHhhhhhhhhHhhHhcCchHHHHHHHHHHH
Q 014481          112 RYKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSL  191 (423)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~  191 (423)
                      -|.+.+..++..+........++.+.+.++++++.+..+++|+.++......+..|+.+.+.||+|.|.+.++|.++.++
T Consensus        44 gWvV~~a~fl~~~~~~g~~~~~Gv~~~~~~~~f~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~rfg~R~v~i~G~~v~~~  123 (509)
T KOG2504|consen   44 GWVVVFASFLVNLSTDGLINSFGLLFEELMDYFGSSSSQIAWIGSLLLGVYLLAGPLVSALCNRFGCRTVMIAGGLVAAL  123 (509)
T ss_pred             eeeeeHhHHHHHHhhhcchheehhhHHHHHHHhCCCccHHHHHHHHHHHHHHHhccHHHHHHhhcCchHHHHHHHHHHHH
Confidence            45666677777777777777777889999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhhHHHH-HHHHHHHHHhhcccchHhHHHHHHhcCCCCchhhHHHHHHhhhhhHHHHHHhhHHHhhhccCchH
Q 014481          192 ATALLPLLAGFMPG-LVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWES  270 (423)
Q Consensus       192 ~~~~~~~~~~~~~~-~~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw~~  270 (423)
                      +.++.. ++++.|. ++..-++.|+|.+..+.....++..+|. ++|+.+.|+...+.++|.++-|.+...+.+.+|||+
T Consensus       124 g~~lss-F~~~i~~l~lt~gvi~G~G~~~~~~paiviv~~YF~-kkR~lA~Gia~~GsG~G~~~~~~l~~~l~~~~G~r~  201 (509)
T KOG2504|consen  124 GLLLSS-FATSLWQLYLTFGVIGGLGLGLIYLPAVVILGTYFE-KKRALATGIAVSGTGVGTVVFPPLLKYLLSKYGWRG  201 (509)
T ss_pred             HHHHHH-HHhhHHHHHHHHHHHhhccchhhhcchhhhhhhHhH-HHHHHHHhhhhccCCcceeeHHHHHHHHHHHhCcHH
Confidence            988775 5555554 4556799999999999999999998887 899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhccCCcCcCCC--------------------CCcchhhhhhhh---hhhhhHHhhcc-----
Q 014481          271 VFYIFGLLGIAWFSGFKILQEGETSNGAT--------------------LAPRSNYINMKK---SLSASLEEMGE-----  322 (423)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~---~~~~~~~~~~~-----  322 (423)
                      .+++.+.+.+-.++....+++........                    ....++.....+   .......+.++     
T Consensus       202 ~~l~~~~~~l~~~~~~~~~rp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  281 (509)
T KOG2504|consen  202 ALLIFGGISLNVLVAGALLRPLSPPKKPNEEKDLRNSAASVESTPKPVELRISERDSGLKKLSLSNLATLKRGPDKWRNS  281 (509)
T ss_pred             HHHHHHHHHHHHHHHHHHcCCCCcCCCchhhhhhccccccccccccccccccccCCCCCCcccccchhhhhhCCcccccc
Confidence            99999998876666655555422221000                    000000000000   00000000000     


Q ss_pred             ccCCCcH---HHhhhcHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhhCCChhhHHHHHHHHHHHHHHHHHHHHHHhHHh
Q 014481          323 SLKDVPW---KAIFRSKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNL  399 (423)
Q Consensus       323 ~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~  399 (423)
                      ..+....   .++++++.++.+.+...+...++.....++|.|..+ +|++..+++.+.++.++..++++++.|++.|+.
T Consensus       282 ~~~~~~~~~d~~ll~~~~fl~~~~~~~~~~~g~~~p~~~l~~~~~~-~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~  360 (509)
T KOG2504|consen  282 PLQAFLSMLDLSLLKDPKFLLLALSNLFAYLGFNVPFVYLPSYAKS-LGLSSNDAAFLLSIIGVSDIIGRIILGLLADKP  360 (509)
T ss_pred             chhhhhhhhhHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCCChhhhHHHHHHHHHhhhhhhhhhhhhcCcc
Confidence            1111111   588999999999999999999999999999999985 799999999999999999999999999999998


Q ss_pred             hhc
Q 014481          400 IAT  402 (423)
Q Consensus       400 ~~r  402 (423)
                      ..+
T Consensus       361 ~~~  363 (509)
T KOG2504|consen  361 GIR  363 (509)
T ss_pred             ccc
Confidence            744

>TIGR00898 2A0119 cation transport protein

Probab=99.92  E-value=1.7e-23  Score=205.39  Aligned_cols=262  Identities=19%  Similarity=0.153  Sum_probs=195.1

Q ss_pred             hhHHHhhhhhCCC---cchhhHHHHHHHHHHHhhhhhhhhHhhHhcCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 014481          135 VAIIPMSHRFGWN---SSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSRV  211 (423)
Q Consensus       135 ~~~~~~~~~~~~s---~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (423)
                      +..+.+.+++|++   ..+.+++.+++.++..++++++|+++||+|||++++++.++.+++.++. .++++++.++++|+
T Consensus       110 ~~~~~i~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~-~~~~~~~~~~~~r~  188 (505)
T TIGR00898       110 TFSSTIVTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLT-AFSPNYTVFLVFRL  188 (505)
T ss_pred             cccccEEEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHH-HHcccHHHHHHHHH
Confidence            4567789999998   8999999999999999999999999999999999999999988888776 56778899999999


Q ss_pred             HHHhhcccchHhHHHHHHhcCCCCchhhHHHHHHhhhhhHHHHHHhhHHHhhhccCchHHHHHHHHHHHHHHHHHHhhcc
Q 014481          212 LVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFSGFKILQE  291 (423)
Q Consensus       212 l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw~~~~~~~~~~~~~~~~~~~~~~~  291 (423)
                      +.|++.+...+...+++.|++|+++|+++.++...+..+|.++++.++..+.+   ||+.+++.+++.++..+..+++||
T Consensus       189 l~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~---wr~~~~~~~i~~~~~~~~~~~~~e  265 (505)
T TIGR00898       189 LVGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIPD---WRWLQLAVSLPTFLFFLLSWFVPE  265 (505)
T ss_pred             HHHhhccchHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhH---HHHHHHHHHHHHHHHHHHHHhcCC
Confidence            99999999999999999999999999999999999999999999999877653   999999999888877777777888


Q ss_pred             CCcCcCCCCCcchhhhhhhh-----------hh-hhh-HHhhccccCCCcHHHhhhcHHHHHHHHHHHHHHHHHHHHHhh
Q 014481          292 GETSNGATLAPRSNYINMKK-----------SL-SAS-LEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLSW  358 (423)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~~~-----------~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  358 (423)
                      +++....+.+.++.....++           .. ... .++..+..+...+++++++|.++...+..++..+......+.
T Consensus       266 sp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  345 (505)
T TIGR00898       266 SPRWLISQGRIEEALKILQRIAKINGKKLPAEVLSLSLEKDLSSSKKQYSFLDLFRTPNLRKTTLCLMMLWFTTAFSYYG  345 (505)
T ss_pred             ChHHHHHCCCHHHHHHHHHHHHHHcCCCCCHHHHhhhhhhhhhhccCCCcHHHHhCChHHHHHHHHHHHHHHHHHHHHHH
Confidence            76532222111111100000           00 000 000111112346789999999887766665554444333333


Q ss_pred             hhHHHHHhhCCChhhHHHHHHHHHHHHHHHHHHHHHHhHHhhhcCC
Q 014481          359 LPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGV  404 (423)
Q Consensus       359 ~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~r~~  404 (423)
                      ++.+.. .++.+..   ......++..+++.++.+++.||+|||+.
T Consensus       346 ~~~~~~-~~~~~~~---~~~~~~~~~~i~~~~~~~~l~dr~grr~~  387 (505)
T TIGR00898       346 LVLDLG-NLGGNIY---LDLFISGLVELPAKLITLLLIDRLGRRYT  387 (505)
T ss_pred             Hhcccc-ccCCChH---HHHHHHHHHHHHHHHHHHHHHHHhCCHHH
Confidence            444443 3455432   33445677888899999999999998854

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.92  E-value=2.2e-22  Score=190.91  Aligned_cols=260  Identities=14%  Similarity=0.042  Sum_probs=179.1

Q ss_pred             HHHHHHHHHHhhhhhhhhhHHH-hhhhhCCCcchhhHHHHHHHH-HHHhhhhhhhhHhhHhcCchHHH-HHHHHHHHHHH
Q 014481          118 TTSLAFVICNMDKVNLSVAIIP-MSHRFGWNSSVAGLVQSSFFW-GYALSQLPGGWLAKIFGGRKVLQ-TGVLIWSLATA  194 (423)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~~~~~~~~-~~~~~~~~~g~l~dr~G~r~~~~-~~~~~~~~~~~  194 (423)
                      .+.+..++..+......+.++. +.+++|.+.+++|++.+...+ +..++.+++++ +||+|+|+.++ .+.++.+++..
T Consensus        19 ~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~-~dr~g~r~~~~~~~~~~~~~~~~   97 (393)
T PRK15011         19 AFLIVAFLTGIAGALQTPTLSIFLTDEVHARPAMVGFFFTGSAVIGILVSQFLAGR-SDKRGDRKSLIVFCCLLGVLACT   97 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HhcccchhHHHHHHHHHHHHHHH
Confidence            3444566666777777777776 678899999999999876655 55555555555 99999998755 44555455555


Q ss_pred             HHHHhhhHHHHHHHHHHHHHhhcccchHhHHHHHHhcCCCCch--hhHHHHHHhhhhhHHHHHHhhHHHhhhccCchHHH
Q 014481          195 LLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEER--SRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVF  272 (423)
Q Consensus       195 ~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r--~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw~~~~  272 (423)
                      +. ..+++++.+++.+.+.|...+...+...+++.++.++++|  +...++.+.+.++|.++||++++.+.++.|||+.|
T Consensus        98 ~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~~~l~~~~gw~~~f  176 (393)
T PRK15011         98 LF-AWNRNYFVLLFVGVFLSSFGSTANPQMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLAYALAMGFSFTVMY  176 (393)
T ss_pred             HH-HHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcChHHHH
Confidence            55 4566667766555555444456778888888888776555  34457888999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHH-HhhccCCcCcCCCCCcchhhhhhhhhhhhhHHhhccccCCCcHHHhhhcHHHHHHHHHHHHHHHH
Q 014481          273 YIFGLLGIAWFSGF-KILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWG  351 (423)
Q Consensus       273 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  351 (423)
                      ++.++..++..+.. +++|+.++.++..  +.+     .+       .         .++  +.+..+...+..++....
T Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-----~~-------~---------~~~--~~~~~~~~~~~~~~~~~~  231 (393)
T PRK15011        177 LSAAVAFIVCGVMVWLFLPSMRKELPLA--TGT-----LE-------A---------PRR--NRRDTLLLFVICTLMWGT  231 (393)
T ss_pred             HHHHHHHHHHHHHHHhhcCccCCCCccc--ccc-----cc-------c---------ccc--ccccHHHHHHHHHHHHHH
Confidence            99888776665443 3455543221110  000     00       0         000  011223333333444445


Q ss_pred             HHHHHhhhhHHHHHhhCCChhhHHHHHHHHHHHHHHHHHHHHHHhHHhhhcCC
Q 014481          352 HYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGV  404 (423)
Q Consensus       352 ~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~r~~  404 (423)
                      ...+..+.|.|+++.+|+++.+++.+.....++.+++.++.|+++||+++|+.
T Consensus       232 ~~~~~~~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~  284 (393)
T PRK15011        232 NSLYIINMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFL  284 (393)
T ss_pred             HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHH
Confidence            55666789999988889999999988888788888999999999999998853

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=99.92  E-value=1.5e-22  Score=192.59  Aligned_cols=265  Identities=15%  Similarity=0.069  Sum_probs=202.8

Q ss_pred             HHHHHHHHHhhhhhhhhhHHHhhhhhCCCcchhhHHHHHHHHHHHhhhhhhhhHhhHh-----cCch-HHHHHHHHHHHH
Q 014481          119 TSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIF-----GGRK-VLQTGVLIWSLA  192 (423)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-----G~r~-~~~~~~~~~~~~  192 (423)
                      +...++.++.........+|.+.++.|++.+++|++..+...  .+..+++|+++||+     |||| +++++.++.+++
T Consensus         4 ~~~l~~~~~~~~~~~~~~~~~~l~~~g~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~   81 (402)
T PRK11902          4 MLLLGFASGLPLALTSGTLQAWMTVEGLDIQTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAAS   81 (402)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHH
Confidence            455667778888888899999999999999999999776665  58899999999999     8876 677777777666


Q ss_pred             HHHHHHhh--hHHHHHHHHHHHHHhhcccchHhHHHHHHhcCCCCchhhHHHHHHhhhhhHHHHHHhhHHHhhhc-cCch
Q 014481          193 TALLPLLA--GFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIEN-LGWE  269 (423)
Q Consensus       193 ~~~~~~~~--~~~~~~~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~-~gw~  269 (423)
                      ..++....  .+++.+++..++.+++.+...++..+++.|++|+++|+++.++...+..+|.++++.+++.+.+. .|||
T Consensus        82 ~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~~~gw~  161 (402)
T PRK11902         82 IAAMAFCPPHAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWLADRVLGWG  161 (402)
T ss_pred             HHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHHHhcccCHH
Confidence            66654332  34666777777888888889999999999999999999999999999999999999999999885 5999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhccCCcCcCCCCCcchhhhhhhhhhhhhHHhhccccCCCcHHHhhhcHHHHHHHHHHHHHH
Q 014481          270 SVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGS  349 (423)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  349 (423)
                      ..|++.+++.++..+..++.+|+++++.++   ++ .   .+.            ....++++++||.++..++..++..
T Consensus       162 ~~f~i~a~~~l~~~l~~~~~~e~~~~~~~~---~~-~---~~~------------~~~~~~~l~~~~~~~~~l~~~~l~~  222 (402)
T PRK11902        162 NTYLLMAGLMLAGALTTLWAPEPEVPARPP---RS-L---GEA------------VVGPLRDFFSRRGAWALLLLIVLYK  222 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCccccccc---ch-h---HHH------------HHHHHHHHHhCcCHHHHHHHHHHHH
Confidence            999998888776655555555543321110   00 0   000            0013578899999888777766666


Q ss_pred             HHHHHHHhhhhHHHHHhhCCChhhHHHHHHHHH-HHHHHHHHHHHHHhHHhhhcCC
Q 014481          350 WGHYTCLSWLPTYFSEELSLNLTEAAWVSILPP-LASVLVTSIAAQFADNLIATGV  404 (423)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~-~~~~~~~~~~g~l~dr~~~r~~  404 (423)
                      ........+.+.++.+.+|+++.+.+++....+ ++.+++.++++++.||+++|+.
T Consensus       223 ~~~~~~~~~~~~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~~  278 (402)
T PRK11902        223 LGDAFAGSLSTTFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRLGLYRS  278 (402)
T ss_pred             hHHHHHHHHHHHHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence            554444445566676778999999998876655 4688999999999999998754

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=99.92  E-value=2.7e-22  Score=179.27  Aligned_cols=271  Identities=18%  Similarity=0.167  Sum_probs=228.3

Q ss_pred             HHHHHHHHHHHHHHhhhhhhhhhHHHhhhhhCCCcchhhHHHHHHHHHHHhhhhhhhhHhhHhcCchHHHHHHHHHHHHH
Q 014481          114 KLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLAT  193 (423)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~  193 (423)
                      ..++.+...+++.++......+.+|.+++.++++..+++++...+..++.+++++.|++.+|+|+|+.+++++.++++++
T Consensus        13 ~~~v~~t~lFfl~G~~~~l~diLip~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~avg~   92 (422)
T COG0738          13 LAFVLLTSLFFLWGFITCLNDILIPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGA   92 (422)
T ss_pred             eHHHHHHHHHHHHHHHhhcchhhHHHHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence            34556666677777888888999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHH--HhhhHHHHHHHHHHHHHhhcccchHhHHHHHHhcCCCCchhhHHHHHHhhhhhHHHHHHhhHHHhhhc------
Q 014481          194 ALLP--LLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIEN------  265 (423)
Q Consensus       194 ~~~~--~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~------  265 (423)
                      .++.  ....++..++++.++.|.|.+...+..+.++....++++....+++.+..+++|.++||++++.++.+      
T Consensus        93 ~lF~pAa~~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lils~~~~~~  172 (422)
T COG0738          93 ALFWPAASSKSYGFFLVALFILASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLILSGVALTM  172 (422)
T ss_pred             HHHhhhhhhhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhhcc
Confidence            8873  23466788899999999999999999999999999998899999999999999999999999998762      


Q ss_pred             -------------cCchHHHHHHHHHHHHHHHHHHhhccCCcCcCCCCCcchhhhhhhhhhhhhHHhhccccCCCcHHHh
Q 014481          266 -------------LGWESVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAI  332 (423)
Q Consensus       266 -------------~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  332 (423)
                                   ..|+++|...+...++..+.....+.+..+...+...+.                    +.....++
T Consensus       173 ~~~~~~~~~~~~~~~v~~pYl~~~~~lvll~v~~~~~k~p~~~~~~~~~~~~--------------------~~~~~~~l  232 (422)
T COG0738         173 SAAQILAIKGADASSVQFPYLILAGLLVLLAVLILLSKLPDLQVAAPSLGAS--------------------GSAGLSSL  232 (422)
T ss_pred             CHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhccCCcCCccccccccc--------------------ccchHHHH
Confidence                         137788888777776666655554433322211111100                    00024789


Q ss_pred             hhcHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhhCCChhhHHHHHHHHHHHHHHHHHHHHHHhHHhhhcCC
Q 014481          333 FRSKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGV  404 (423)
Q Consensus       333 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~r~~  404 (423)
                      +++|.++...+..|++...+..+..|++.|+.+..|.+..+++...+..+++.++|+.++.++..|+...|.
T Consensus       233 ~~~~~~~~gvl~~FlYVG~Eva~gsfl~~y~~~~~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~~~~~k~  304 (422)
T COG0738         233 FQNKHLRLGVLAIFLYVGAEVAIGSFLVSYLEELLGLNEQQAAYYLSFFWVGFMVGRFIGSALMSRIKPEKY  304 (422)
T ss_pred             HhChHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHH
Confidence            999999999999999999999999999999998789999999999999999999999999999999886644

>TIGR00901 2A0125 AmpG-related permease

Probab=99.91  E-value=1e-22  Score=190.72  Aligned_cols=252  Identities=14%  Similarity=0.100  Sum_probs=191.5

Q ss_pred             hhhhhhHHHhhhhhCCCcchhhHHHHHHHHHHHhhhhhhhhHhhHh-----cCchHH-HHHHHHHHHHHHHHHHhh--hH
Q 014481          131 VNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIF-----GGRKVL-QTGVLIWSLATALLPLLA--GF  202 (423)
Q Consensus       131 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-----G~r~~~-~~~~~~~~~~~~~~~~~~--~~  202 (423)
                      ...++.+|.+.+++|+|.+++|+.... .+...+ .+++|+++||+     ||||.+ +.+.++.++..+.+++..  .+
T Consensus         5 ~~~~~~~~~~~~~~g~s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~~~~~   82 (356)
T TIGR00901         5 GLVGNTLPYWLRSKNVSLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLVPSTD   82 (356)
T ss_pred             hhHHhHHHHHHHHcCCCHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCCcchh
Confidence            456678899999999999999999765 555554 89999999998     899975 556666666654553332  34


Q ss_pred             HHHHHHHHHHHHhhcccchHhHHHHHHhcCCCCchhhHHHHHHhhhhhHHHHHHhhHHHhhhccC--------chHHHHH
Q 014481          203 MPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLG--------WESVFYI  274 (423)
Q Consensus       203 ~~~~~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g--------w~~~~~~  274 (423)
                      .+.+....++.+++.+...++..+++.|++|+++|+++.++...+..+|.++++.+++.+.+..|        ||..|++
T Consensus        83 l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~wr~~f~i  162 (356)
T TIGR00901        83 LPLLAGLAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLITLWGYIFFW  162 (356)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccHHHHHH
Confidence            45666777788888888899999999999999999999999999999999999999999988888        9999999


Q ss_pred             HHHHHHHHHHHHHhh-ccCCcCcCCCCCcchhhhhhhhhhhhhHHhhccccCCCcHHHhhhcHH---HHHHHHHHHHHHH
Q 014481          275 FGLLGIAWFSGFKIL-QEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKA---VWAMIYAHFCGSW  350 (423)
Q Consensus       275 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~  350 (423)
                      .++..++..+..++. +|+.+. ...  +++..    +.    .        ...++++++++.   ++.+.+..++...
T Consensus       163 ~ai~~l~~~~~~~~~~~e~~~~-~~~--~~~~~----~~----~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~  223 (356)
T TIGR00901       163 TALLILPGLLVTLFLAKEPQED-ASV--PKPLT----QA----V--------LKPIREFFQRKNMIQALLLLLLIVLYKL  223 (356)
T ss_pred             HHHHHHHHHHHHHHhccCCCcc-ccc--chhHH----HH----H--------HHHHHHHHHhcCchHHHHHHHHHHHHHH
Confidence            888777665554443 442211 100  00000    00    0        012456677765   6767777777778


Q ss_pred             HHHHHHhhhhHHHHHhhCCChhhHHHHHHHHH-HHHHHHHHHHHHHhHHhhhcCC
Q 014481          351 GHYTCLSWLPTYFSEELSLNLTEAAWVSILPP-LASVLVTSIAAQFADNLIATGV  404 (423)
Q Consensus       351 ~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~-~~~~~~~~~~g~l~dr~~~r~~  404 (423)
                      ..+....++|.|+++ +|+++.+.+.+....+ ++.+++.+++|++.||+++|+.
T Consensus       224 ~~~~~~~~~~~~l~~-~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~  277 (356)
T TIGR00901       224 GDSAATVLTTLFLLD-MGFSKEEIALVAKINGLLGAILGGLIGGIIMQPLNILYA  277 (356)
T ss_pred             HHHHHHHHHHHHHHH-cCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence            888888999999987 8999999998887666 6788999999999999998754

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=99.91  E-value=7.2e-23  Score=219.37  Aligned_cols=271  Identities=15%  Similarity=0.087  Sum_probs=200.0

Q ss_pred             HHHHHHHHHHHhhhhhhhhhHH-HhhhhhCCCc-chhhHHHHHHHHHHHhhhhhhhhHhhHhcCchHHHH--HHHHHHHH
Q 014481          117 GTTSLAFVICNMDKVNLSVAII-PMSHRFGWNS-SVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQT--GVLIWSLA  192 (423)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~s~-~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~--~~~~~~~~  192 (423)
                      ...++..+...+....+..+.. .+..+.+.+. ...++..+++.++++++++++|+++||+|||+++..  ...+....
T Consensus        18 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~~~~   97 (1140)
T PRK06814         18 WTQFFGAFNDNFLKNALVILILYGLSGALGAYNNALVTLAGAVFILPFFIFSALAGQLADKYDKAKLAKILKFAEIGIAA   97 (1140)
T ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHhhhHHhhhhhccHHHHHHHHHHHHHHHHH
Confidence            3334444443433333333322 3333443332 447888889999999999999999999999997643  22222222


Q ss_pred             HHHHHHhhhHHHHHHHHHHHHHhhcccchHhHHHHHHhcCCCCchhhHHHHHHhhhhhHHHHHHhhHHHhhhccCchHHH
Q 014481          193 TALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVF  272 (423)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw~~~~  272 (423)
                      ..+.++..++++.++++|+++|++.+...|+..+++.+++++++|++++|+.+.+.++|.++||+++|++....||++.|
T Consensus        98 ~~~~~~~~~s~~~l~~~~~l~gi~~a~~~p~~~a~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~~~~~~  177 (1140)
T PRK06814         98 LAIYGFHLNSVPLLFAALFLMGIHSALFGPIKYSILPDHLNKDELLGANALVEAGTFIAILLGTIIGGLATISGNFVILV  177 (1140)
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHHHhhchHHHHhhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHhccccHHHH
Confidence            22333444778999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhccCCcCcCCCCCcchhhhhhhhhhhhhHHhhccccCCCcHHHhhhcHHHHHHHHHHHHHHHHH
Q 014481          273 YIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGH  352 (423)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  352 (423)
                      ++.++..++.+++.++++++++............    +.   .         ...++.+.+++.+|...+..++.++..
T Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~---~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (1140)
T PRK06814        178 ALLMGIAVLGWLASLFIPKTGNAAPDLKIDRNII----RS---T---------ITLLKYAKADKRIWLAILGISWFWLVG  241 (1140)
T ss_pred             HHHHHHHHHHHHHHhhCCCCCCCCCCCeeccchH----HH---H---------HHHHHHHhcCchHHHHHHHHHHHHHHH
Confidence            5555555555555566665543221111100000    00   0         013577889999999988888888888


Q ss_pred             HHHHhhhhHHHHHhhCCChhhHHHHHHHHHHHHHHHHHHHHHHhHHhhhcC
Q 014481          353 YTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATG  403 (423)
Q Consensus       353 ~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~r~  403 (423)
                      ..+..++|.|+++.+|.++..++++.+...++.++|.++.|++.++..+++
T Consensus       242 ~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~~  292 (1140)
T PRK06814        242 AVVLSQLPLLAKETLGGDENVATLFLAVFSVGVAVGSFLASKLSEGRITLL  292 (1140)
T ss_pred             HHHHHHhHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCceeee
Confidence            888899999999989999999999999999999999999999998766554

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.91  E-value=2.6e-24  Score=190.69  Aligned_cols=239  Identities=16%  Similarity=0.151  Sum_probs=209.4

Q ss_pred             hhhCCCcchhhHHHHHHHHHHHhhhhhhhhHhhHhcCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcccch
Q 014481          142 HRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSRVLVGIGEGVSP  221 (423)
Q Consensus       142 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~  221 (423)
                      ++.+-+++++|++++.+.+.+.+.+++.|.++||+|+|..+++|++++...++++ .+.++++.++++|.++|+|.+...
T Consensus        99 ~~~~~e~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilF-afg~sy~~l~vAR~LQgvgsA~~~  177 (464)
T KOG3764|consen   99 ISLDRENTQIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILF-AFGNSYPMLFVARSLQGVGSAFAD  177 (464)
T ss_pred             cCccccccchhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHH-HHcchhHHHHHHHHHhhhhHHHHH
Confidence            4456788899999999999999999999999999999999999999999999888 577888999999999999999999


Q ss_pred             HhHHHHHHhcCCCC-chhhHHHHHHhhhhhHHHHHHhhHHHhhhccCchHHHHHHHHHHHHHHHHHHhhccCCcCcCCCC
Q 014481          222 SAATDLIARSIPLE-ERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFSGFKILQEGETSNGATL  300 (423)
Q Consensus       222 ~~~~~~i~~~~~~~-~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (423)
                      .+..++++|.+|++ +|++++|+...+.++|.++||++||.+.+..|.+.+|.+.+++.++-..+.+++.++.+.+... 
T Consensus       178 tsglamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFlVL~~v~Lld~~L~l~vi~p~~~~~~~-  256 (464)
T KOG3764|consen  178 TSGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLVLAIVLLLDGALQLLVIEPTEMDPDS-  256 (464)
T ss_pred             hhhHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHHHHHHHHHHHHHHHHheeCccccCccc-
Confidence            99999999999866 5899999999999999999999999999999999999999999998877777766654332211 


Q ss_pred             CcchhhhhhhhhhhhhHHhhccccCCCcHHHhhhcHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhhCCChhhHHHHHHH
Q 014481          301 APRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSIL  380 (423)
Q Consensus       301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~  380 (423)
                                            ..+..++++++++|.++.........+.........++.++.+.+..+..+.|..+..
T Consensus       257 ----------------------~~~~~~~~~Ll~dP~I~~~agai~~~n~~lafLePtlslwm~e~m~~p~w~~G~~fLp  314 (464)
T KOG3764|consen  257 ----------------------TEQGTPMWSLLMDPYILLIAGAITFSNSSLAFLEPTLSLWMLETMFTPGWEVGLAFLP  314 (464)
T ss_pred             ----------------------cccCccHHHHHhCchHhhhhcchhhccchHHHhCcccHHHHHHhccCCCcceeeeecc
Confidence                                  1112357899999999998888888888888888899999988888666699999999


Q ss_pred             HHHHHHHHHHHHHHHhHHhhhcCC
Q 014481          381 PPLASVLVTSIAAQFADNLIATGV  404 (423)
Q Consensus       381 ~~~~~~~~~~~~g~l~dr~~~r~~  404 (423)
                      ..+...++..+.|.+.||++.-++
T Consensus       315 ~~~~y~ig~~lfg~la~k~~~~~w  338 (464)
T KOG3764|consen  315 ASLSYAIGTNLFGKLADKYPHLRW  338 (464)
T ss_pred             cccchhccCchHHHHHHhcCchhH
Confidence            999999999999999999995543

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=99.90  E-value=1.3e-21  Score=185.92  Aligned_cols=272  Identities=12%  Similarity=0.037  Sum_probs=196.1

Q ss_pred             HHHHHHHHHHHHhhhhhhhhhHHHh-hhhhCCCcchhhHHHHHHHHHHHhhhhhhhhHhhHhcCchHHHHHHHHHHHHHH
Q 014481          116 IGTTSLAFVICNMDKVNLSVAIIPM-SHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATA  194 (423)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~  194 (423)
                      ++.+...+++.+.......+.+|.+ .+++|.+..+.|++.+++.++..++++++|+++||+|||+.++.+.+..++...
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~   83 (396)
T TIGR00882         4 FWMFGLFFFLYFFIMSAYFPFFPIWLHDVNGLSKTDTGIVFSCISLFSILFQPLFGLISDKLGLKKHLLWIISGLLVLFA   83 (396)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHH
Confidence            3445556667777777888887774 567899999999999999999999999999999999999999887666655433


Q ss_pred             HHHH--hh-----hHHHHHHHHHHHHHhhcccchHhHHHHHHhcCCCCchhhHHHHHHhhhhhHHHHHHhhHHHhhhccC
Q 014481          195 LLPL--LA-----GFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLG  267 (423)
Q Consensus       195 ~~~~--~~-----~~~~~~~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g  267 (423)
                      ....  ..     +.+..+++.+++.|++.+...+....+..+..  ++++..+|......++|.++||++++.+.+ .+
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~--~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~-~~  160 (396)
T TIGR00882        84 PFFIYVFGPLLQSNILVGAIVGGLYLGFVFSAGAGAIEAYIEKVS--RNSNFEYGKARMFGCVGWALCASIAGILFS-ID  160 (396)
T ss_pred             HHHHHHhhhHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHhh--hhcccccchhhhhcccHHHHHHHHHhhhhc-cC
Confidence            2211  11     22334566788899988888888888777753  344567788888899999999999998875 49


Q ss_pred             chHHHHHHHHHHHHHHHHHHhhccCCcCcCCCCCcchhhhhhhhhhhhhHHhhccccCCCcHHHhhhcHHHHHHHHHHHH
Q 014481          268 WESVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFC  347 (423)
Q Consensus       268 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  347 (423)
                      |++.|++.+++.++..+..+...+++++++.. .+..+     .        ..+..+..++++++|||.++.+.+..++
T Consensus       161 ~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-----~--------~~~~~~~~~~~~~l~~~~~~~~~l~~~~  226 (396)
T TIGR00882       161 PQIVFWLGSGFALILMLLLMFAKPKAPSSATV-ANALG-----A--------NASAFSLKLALELFRQRKFWMFVLYVVG  226 (396)
T ss_pred             chHHHHHHHHHHHHHHHHHHHhCCCCchhhhh-hcccc-----c--------ccCCCCHHHHHHHHcCCcHHHHHHHHHH
Confidence            99999998888777655554443332211100 00000     0        0000111235688899998877777666


Q ss_pred             HHHHHHHHHhhhhHHHHHhh---CCChhhHHHHHHHHHHHHHHHHHHHHHHhHHhhhcCC
Q 014481          348 GSWGHYTCLSWLPTYFSEEL---SLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGV  404 (423)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~---g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~r~~  404 (423)
                      ....+.....+.+.|+.+.+   +.+....+.+.+...+..+++.+..+++.||+++|+.
T Consensus       227 ~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~  286 (396)
T TIGR00882       227 VACVYDVFDQQFANFFTSFFATPQQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAKNA  286 (396)
T ss_pred             HHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchh
Confidence            66666667678888887654   4556667888888889999999999999999998854

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=99.90  E-value=7.6e-22  Score=212.11  Aligned_cols=272  Identities=16%  Similarity=0.140  Sum_probs=198.1

Q ss_pred             HHHHHHHHHh-hhhhhhhhHHHhhhhhCCCc--chhhHHHHHHHHHHHhhhhhhhhHhhHhcCchHHHHHHHHHHHHHHH
Q 014481          119 TSLAFVICNM-DKVNLSVAIIPMSHRFGWNS--SVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATAL  195 (423)
Q Consensus       119 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~s~--~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~  195 (423)
                      +++..++..+ +........+.+..+++.+.  ...+++.+++.+++.++++++|+++||+|||++++++.++.++..++
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~~~~~~~~~~   93 (1146)
T PRK08633         14 LLLTQFLNAFNDLGHKILIQNTLIKAYDGSEQVILTAIVNALFLLPFLLLSSPAGFLADKFSKNRVIRIVKLFEVGLTLL   93 (1146)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHhhhHhhhcccccHHHHHHHHHHHHHHHHHH
Confidence            3334444333 33344444555656666554  34689999999999999999999999999999999988765555543


Q ss_pred             HH--HhhhHHHHHHHHHHHHHhhcccchHhHHHHHHhcCCCCchhhHHHHHHhhhhhHHHHHHhhHHHhhhc--------
Q 014481          196 LP--LLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIEN--------  265 (423)
Q Consensus       196 ~~--~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~--------  265 (423)
                      ..  ...++++.++++|++.|++.+...++..+++.+++|+++|++++|+...+..+|.++|+++++++.+.        
T Consensus        94 ~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~~~~~~~~~  173 (1146)
T PRK08633         94 IVLAYYLGWFWLAFAVTFLLGAQSAIYSPAKYGIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLFESVNGNTPSE  173 (1146)
T ss_pred             HHHHHHHccHHHHHHHHHHHHHHHHhhchHHHhhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccc
Confidence            32  23466889999999999999999999999999999999999999999999999999999999999875        


Q ss_pred             c-CchHHHHHHHHHH-HHHHHHHHhhccCCcCcCCCCCcchhhhhhhhhhhhhHHhhccccCCCcHHHhhhcHHHHHHHH
Q 014481          266 L-GWESVFYIFGLLG-IAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIY  343 (423)
Q Consensus       266 ~-gw~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  343 (423)
                      + +|.+.+.+.++.. ++.++..+.+++.++...... +......    ...         ....++.+++++.++...+
T Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~----~~~---------~~~~~~~l~~~~~~~~~~~  239 (1146)
T PRK08633        174 ILGRIAPAGLVLLAVAVLGLIFAYRLPKVPAAAPEVF-DKKKYLF----PKL---------LWRNLKLLRSDRVLWLAII  239 (1146)
T ss_pred             cccchHHHHHHHHHHHHHHHHHHhcCcCCCCCCcccc-ccccccc----HHH---------HHHHHHHHhcCcHHHHHHH
Confidence            2 3444444433333 233334444555433221110 0000000    000         0012567788898888887


Q ss_pred             HHHHHHHHHHHHHhhhhHHHHHhhCCChh-hHHHHHHHHHHHHHHHHHHHHHHhHHhhhcCC
Q 014481          344 AHFCGSWGHYTCLSWLPTYFSEELSLNLT-EAAWVSILPPLASVLVTSIAAQFADNLIATGV  404 (423)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~~~g~s~~-~~~~~~~~~~~~~~~~~~~~g~l~dr~~~r~~  404 (423)
                      ..++..........++|.|+.+.+|++.. ..+++.+...++.+++.++.+++.||+++++.
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~  301 (1146)
T PRK08633        240 GLSYFWFISQLAQANFPAYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGL  301 (1146)
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEccc
Confidence            77777777777888999999988999998 99999999999999999999999999887643

>TIGR00806 rfc RFC reduced folate carrier

Probab=99.89  E-value=5.4e-21  Score=176.85  Aligned_cols=270  Identities=14%  Similarity=0.035  Sum_probs=195.9

Q ss_pred             HhhhhhhhhhHHHhhhhhCCCcch-hhHHHHHHHHHHHhhhhhhhhHhhHhcCchHHHHHHHHHHHHHHHHHHhhhHHHH
Q 014481          127 NMDKVNLSVAIIPMSHRFGWNSSV-AGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPG  205 (423)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~s~~~-~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (423)
                      .-.+...+.+.|.+.+++|++..+ .|.+.+++..+++++.++.|+++||+|.|+++.++.+.+++..++++ +++++..
T Consensus        39 ~e~R~n~s~a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~-fa~Sl~~  117 (511)
T TIGR00806        39 AQFRPGESFITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLL-LGTSVWH  117 (511)
T ss_pred             HHhhchHHHHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence            345677788889999999999999 99999999999999999999999999999999999999999998884 6777899


Q ss_pred             HHHHHHHHHhhcccchHhHHHHHHhcCCCCchhhHHHHHHhhhhhHHHHHHhhHHHhhhccCchHHHHHH---HHHHHHH
Q 014481          206 LVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIF---GLLGIAW  282 (423)
Q Consensus       206 ~~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw~~~~~~~---~~~~~~~  282 (423)
                      +.++|++.|++.|... +...++..|+|+++|+++.|++..+..+|.+++++++++ +..+|||+.+...   .....+.
T Consensus       118 L~i~R~llGvaEA~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~ql-l~s~gWr~y~~Ln~Isl~s~~~a  195 (511)
T TIGR00806       118 MQLMEVFYSVTMAARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQL-LVTLGWISYSTLNIISLVFMTFS  195 (511)
T ss_pred             HHHHHHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcCchhHHHHHHHHHHHHHHH
Confidence            9999999999999999 999999999999999999999999999999999999999 5567999765443   2223445


Q ss_pred             HHHHHhhccCCcCcCCCCCc--c-h--hh-hhhhhhhhhhHHhhcccc-------CCCcHHHhhhcHHHHHHHHHHHHHH
Q 014481          283 FSGFKILQEGETSNGATLAP--R-S--NY-INMKKSLSASLEEMGESL-------KDVPWKAIFRSKAVWAMIYAHFCGS  349 (423)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~~--~-~--~~-~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~l~~~~~~  349 (423)
                      ++..+++|..++..--...+  + .  .. ............+..+..       -...++..++|+.++...+-..+..
T Consensus       196 ~~~a~~LP~~~~sl~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~y~n~~vl~WSlWwa~a~  275 (511)
T TIGR00806       196 VFLALFLKRPKRSLFFNRLEDVRGALPCELDQMVPGPGGKLEDYLGTCRDSFLVRMLSELVTIYRNPQLLLWSLWWVFNS  275 (511)
T ss_pred             HHHHHhCCCCchhhhhccccccccccccccccCCCCCccccchhhhhhhhHHHHHHHHHHHHHhcCcchhhhhHHHHHHh
Confidence            66667777544311000000  0 0  00 000000000000000000       0112345678888888888888888


Q ss_pred             HHHHHHHhhhhHHHHHhhCCChhhHHHHHHHHHHHHHHHHHHHHHHhHHh
Q 014481          350 WGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNL  399 (423)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~  399 (423)
                      .+++.+.+|......+..+-.+..-|.+-++..+.+.+..+..|++-.++
T Consensus       276 ~g~~qv~~Y~Q~LW~~v~~~~~~yNG~veA~~tllga~~a~~ag~~~~~w  325 (511)
T TIGR00806       276 AGYYLITYYVHTLWGTLDESLNKYNGAVDAASTLLGAITSFIAGFVNIRW  325 (511)
T ss_pred             hHHHHHHHHHHHHHHHcCCCccccCCHHHHHHHHHHHHHHHHHHhhcCCc
Confidence            88888777777666554332222456677777888888888889885554

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=99.89  E-value=1e-20  Score=182.99  Aligned_cols=288  Identities=13%  Similarity=0.148  Sum_probs=191.1

Q ss_pred             HHHHHHHHHHHHHHhhhhhhhhhH-HHhhhhhCCCcchhhHHHHHHHHHHHhhhhhhhhHhhH-hcCchHHHHHHHHHHH
Q 014481          114 KLIGTTSLAFVICNMDKVNLSVAI-IPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKI-FGGRKVLQTGVLIWSL  191 (423)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~G~r~~~~~~~~~~~~  191 (423)
                      +.+..+++..+...+..+.....+ .++.+++|++..+.+++.+.+.....+..+++|+++|| +|||++++++.+++++
T Consensus        14 ~~~~~~~~~~~~er~~~y~~~~~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~~~   93 (489)
T PRK10207         14 RPFFMIFFVELWERFGYYGVQGILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIVLAI   93 (489)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHHHHH
Confidence            444455555556666666555554 44678899999999999999998888899999999999 9999999999999999


Q ss_pred             HHHHHHHhhhHHHHHHHHHHHHHhhcccchHhHHHHHHhcCCCC--chhhHHHHHHhhhhhHHHHHHhhHHHhhhccCch
Q 014481          192 ATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLE--ERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWE  269 (423)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~i~~~~~~~--~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw~  269 (423)
                      +.+++....+....++++|+++|+|.|...+...++++|.+|++  +|++++++++.+.++|..+||.+++++.++.|||
T Consensus        94 g~~~~~~~~~~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~~~gw~  173 (489)
T PRK10207         94 GYFMTGMSLLKPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIADKFGYS  173 (489)
T ss_pred             HHHHHHHhccchhHHHHHHHHHHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHHhhChH
Confidence            99887543333334568899999999999999999999999876  4578999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhccCCcCcC--CCCCcch--hhhhh---------h-hh-hhh-hHHh--------------
Q 014481          270 SVFYIFGLLGIAWFSGFKILQEGETSNG--ATLAPRS--NYINM---------K-KS-LSA-SLEE--------------  319 (423)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~--~~~~~---------~-~~-~~~-~~~~--------------  319 (423)
                      +.|++.++..++.++.....++..+...  .+.++.+  .....         . .. ... ....              
T Consensus       174 ~~F~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f  253 (489)
T PRK10207        174 VTYNLCGAGLIIALLVYFACRGMVKDIGSEPDHKPMSFSKLLLVLLGSVVMIFVCAWLMHNVEVANLVLIVLSIVVTIIF  253 (489)
T ss_pred             HHHHHHHHHHHHHHHHHHHcchhhcccCCCCCccchhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence            9999866544444433333332211110  0000000  00000         0 00 000 0000              


Q ss_pred             hccccCCCcHHHhhhcHHHHHHHHH--HHHHHHHHHHHHhhhhHHHHHhhCCCh----hhHHHHHHHHHHHHHHHHHHHH
Q 014481          320 MGESLKDVPWKAIFRSKAVWAMIYA--HFCGSWGHYTCLSWLPTYFSEELSLNL----TEAAWVSILPPLASVLVTSIAA  393 (423)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~~~~~~~~~~~~~~~~~~g~s~----~~~~~~~~~~~~~~~~~~~~~g  393 (423)
                      ..+..+   ..+.+|+|.+....+.  ..+....+....+.++.|.++..+.+.    .....+.....+..++..++.+
T Consensus       254 ~~~~~~---~~~~~r~r~~~~~~l~~~~~~f~~~~~q~~~~l~l~~~~~~~~~~~G~~i~~~~~~~~n~~~iii~~pl~~  330 (489)
T PRK10207        254 FREAFK---LDKTGRNKMFVAFVLMLEAVVFYILYAQMPTSLNFFAINNVHHEILGFSINPVSFQALNPFWVVVASPILA  330 (489)
T ss_pred             HHHHhc---CCHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHhccccccceEECHHHHHhHhHHHHHHHHHHHH
Confidence            000000   0145666665543322  444455556666778888875333211    1233455555566778888899


Q ss_pred             HHhHHhhhcCC
Q 014481          394 QFADNLIATGV  404 (423)
Q Consensus       394 ~l~dr~~~r~~  404 (423)
                      ++.||+++|+.
T Consensus       331 ~l~~rl~~r~~  341 (489)
T PRK10207        331 GIYTHLGSKGK  341 (489)
T ss_pred             HHHHHHhhCCC
Confidence            99999998864

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.89  E-value=2.6e-21  Score=185.32  Aligned_cols=270  Identities=11%  Similarity=0.035  Sum_probs=179.1

Q ss_pred             HHHHHHHHHHhhhhhhhhhHHH-hhhhhCCCcchhhHHHHHHHHHHHhhhhhhhhHhhHhcCchHHHHHHHHHHHHHHHH
Q 014481          118 TTSLAFVICNMDKVNLSVAIIP-MSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALL  196 (423)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~  196 (423)
                      .+.+.+++..+..+...++++. +.+++|++..++|++.+++.++..++++++|+++||+|||++++++..+.+++....
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~   93 (420)
T PRK09528         14 IFSLFFFFFFFIWSSWFSFFPIWLHDINGLSGTDTGIIFSANSLFALLFQPLYGLISDKLGLKKHLLWIISGLLVLFGPF   93 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHH
Confidence            3344555555656666777766 455599999999999999999999999999999999999999988766655443222


Q ss_pred             HH--hhh-----HHHHHHHHHHHHHhhcccchHhHHHHHHhcCCCCchhhHHHHHHhhhhhHHHHHHhhHHHhhhccCch
Q 014481          197 PL--LAG-----FMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWE  269 (423)
Q Consensus       197 ~~--~~~-----~~~~~~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw~  269 (423)
                      ..  ...     .+...++++++.|.+.....+....+..+ . .++++..+|......++|..++|++++.+.+. +|+
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~-~~~  170 (420)
T PRK09528         94 FIYVFAPLLQYNILLGAIVGGIYLGFGFLAGAGAIEAYIER-V-SRRSGFEYGRARMWGSLGWALCAFIAGILFNI-NPQ  170 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhhccchhhhhhHHHH-H-HhhccccchhhHHhhhHHHHHHHHHHHHHHhc-Cch
Confidence            11  111     11112333444444444444444444332 2 24678888999999999999999999998864 899


Q ss_pred             HHHHHHHHHHHHHHHHHHhhccCCcCcCCCCCcchhhhhhhhhhhhhHHhhccccCCCcHHHhhhcHHHHHHHHHHHHHH
Q 014481          270 SVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGS  349 (423)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  349 (423)
                      +.|++.+++.++.++..++.+++++++....+++++     +         .+.......++.+|||.+|.+.+..++..
T Consensus       171 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~---------~~~~~~~~~~~~l~~~~~~~l~l~~~~~~  236 (420)
T PRK09528        171 INFWLGSGSALILLVLLFFAKPDAPSTAKVANALGA-----N---------ASAVSLKDALALLKLPKFWFLVLYVIGVA  236 (420)
T ss_pred             HhHHHHHHHHHHHHHHHhcccccccchhhhccchhc-----c---------cccccHHHHHHHccCCCeEeehHHHHHHH
Confidence            999998888776665555554433221110000000     0         00000112346788888877666555555


Q ss_pred             HHHHHHHhhhhHHHHHhh---CCChhhHHHHHHHHHHHHHHHHHHHHHHhHHhhhcCC
Q 014481          350 WGHYTCLSWLPTYFSEEL---SLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGV  404 (423)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~---g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~r~~  404 (423)
                      ........++|.|+.+.+   +.+..+.+.+.++..++.+++.++.|++.||+++|+.
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~  294 (420)
T PRK09528        237 CFYDVFDQQFPNFFASFFATPEQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNA  294 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchh
Confidence            555555567787776543   5566778888999999999999999999999998854

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=99.89  E-value=4.2e-21  Score=169.07  Aligned_cols=249  Identities=20%  Similarity=0.261  Sum_probs=213.8

Q ss_pred             hhhhhhhhhHHHhhhhhCCCcchhhHHHHHHHHHHHhhhhhhhhHhhHhcCchHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 014481          128 MDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLV  207 (423)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~  207 (423)
                      -....+++.++.+.+++|+|.+..|++.++..+...+.+++..++..|+|.++.+..++++.+++.++-...  +.+.++
T Consensus        26 ~~itsvgPLL~~Ir~~~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~~g~er~l~~~Llli~~G~~iR~~~--~~~~L~  103 (395)
T COG2807          26 PAITSVGPLLDEIRQDLGLSFSVAGLLTTLPLLAFGLFAPAAPRLARRFGEERSLFLALLLIAAGILIRSLG--GLPLLF  103 (395)
T ss_pred             hhhhhhhhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHhcc--cHHHHH
Confidence            455777889999999999999999999999999999999999999999999999999999999998776443  447788


Q ss_pred             HHHHHHHhhcccchHhHHHHHHhcCCCCchhhHHHHHHhhhhhHHHHHHhhHHHhhhcc-CchHHHHHHHHHHHHHHHHH
Q 014481          208 LSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENL-GWESVFYIFGLLGIAWFSGF  286 (423)
Q Consensus       208 ~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~-gw~~~~~~~~~~~~~~~~~~  286 (423)
                      ..-.+.|.|.+......++.+-+.|| ++-+..+|+|....++|..+++.+...+.++. |||....+.+.++++.++.+
T Consensus       104 ~gt~l~G~gIav~nVLLPslIK~~Fp-k~~~~mtglYs~sl~~~aaLaa~lavpla~~~~gW~~aL~~WAl~allAl~~W  182 (395)
T COG2807         104 LGTLLAGAGIAVINVLLPSLIKRDFP-KRVGLMTGLYSTSLGAGAALAAALAVPLAQHSGGWRGALGFWALLALLALLIW  182 (395)
T ss_pred             HHHHHHHhhHHHHHHhhhHHHHhhcc-cchhhHHhHHHHHHHHHHHHHhhhhhHHHHhhccHHHHHHHHHHHHHHHHHHH
Confidence            89999999999999999999999999 88999999999999999999999999998886 79999999999988877665


Q ss_pred             HhhccCCcCcCCCCCcchhhhhhhhhhhhhHHhhccccCCCcHHHhhhcHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHh
Q 014481          287 KILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEE  366 (423)
Q Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  366 (423)
                      +--...++......+                        ..+-..++|+|.-|.+.+.+.++...+|....|+|.++.|+
T Consensus       183 lPq~~r~~~~~~~~~------------------------~~~~~~vw~~~~aW~vtLfmGlqS~~~Y~~~~WLP~ili~~  238 (395)
T COG2807         183 LPQALREQAASIATK------------------------LVSVRKVWRSPLAWQVTLFMGLQSLLYYIVIGWLPAILIDR  238 (395)
T ss_pred             hhhcccccccccccc------------------------cccccccccCchhHHHHHHHHhhHHHHHHHHHHHHHHHHHc
Confidence            443211111111000                        01124689999999999999999999999999999999985


Q ss_pred             hCCChhhHHHHHHHHHHHHHHHHHHHHHHhHHhhhcCC
Q 014481          367 LSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGV  404 (423)
Q Consensus       367 ~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~r~~  404 (423)
                       |+|+.++|.+.+...+..++..+....+.+|...+|.
T Consensus       239 -G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~  275 (395)
T COG2807         239 -GLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRP  275 (395)
T ss_pred             -CCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccch
Confidence             9999999999999999999999999999999665544

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=99.88  E-value=3.3e-21  Score=188.66  Aligned_cols=285  Identities=18%  Similarity=0.200  Sum_probs=201.0

Q ss_pred             HHHHHHHHHhh--hhhhhhhHHHhhhhhC-----CCc--chhhHHHHHHHHHHHhhhhhhhhHhhHhcCchHHHHHHHHH
Q 014481          119 TSLAFVICNMD--KVNLSVAIIPMSHRFG-----WNS--SVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIW  189 (423)
Q Consensus       119 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~-----~s~--~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~  189 (423)
                      ..+..+....+  .....+....+.++..     .+.  .+.+|+.++..++..+++++.|+++|++|||+.++++.+++
T Consensus        50 ~~~~~~~fg~~g~~g~~s~~~~~~~~~~~~~~~~~~~~~~~~s~~~s~~~lga~~g~l~~g~l~d~~GRk~~l~~~~~~~  129 (513)
T KOG0254|consen   50 AALGGLLFGYDGDIGGISGALDFLQRFASLYDLSTGEYSVRQGLLTSILNLGALVGSLLAGRLGDRIGRKKTLLLAVVLF  129 (513)
T ss_pred             HHHHHHHhCcccccccchhhHHHHHhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence            33334443433  3445555555555321     122  34589999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHHhhcccchHhHHHHHHhcCCCCchhhHHHHHHhhhhhHHHHHHhhHHHhhhc-cCc
Q 014481          190 SLATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIEN-LGW  268 (423)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~-~gw  268 (423)
                      .++.++. +.+++++.++++|++.|+|.|+.......+++|..|++.||...+..+....+|..++..++....+. .+|
T Consensus       130 ~iG~ii~-~~a~~~~~l~~GR~l~G~g~G~~~~~~piy~sEiap~~~RG~l~~~~~l~~~~Gi~~~~~~~~~~~~~~~~W  208 (513)
T KOG0254|consen  130 LIGAIII-ALAPSWYQLIVGRILTGLGVGGASVLAPVYISEIAPAHIRGTLVSLYQLFITIGILLGYCINYGTSKVYAGW  208 (513)
T ss_pred             HHHHHHH-HHhhhHHHHHHHHHHhccchhhhhhcchhhHhhcCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhccCCccH
Confidence            9999888 57778899999999999999999999999999999999999999999999999999995555544332 489


Q ss_pred             hHHHHHHHHHHHHHHHHHHhhccCCcCcCCCCCcchhhhhhhh-------hhhhhH--------HhhccccCCCcHHHhh
Q 014481          269 ESVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKK-------SLSASL--------EEMGESLKDVPWKAIF  333 (423)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~--------~~~~~~~~~~~~~~~~  333 (423)
                      |..+.+..+.+++..+..+++||+++...+..+.++.......       ....+.        .+.........+++++
T Consensus       209 r~~~~~~~i~~~~~~~~~~~~pesp~~L~~~g~~~~a~~~l~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  288 (513)
T KOG0254|consen  209 RIPLGLALIPAVILALGMLFLPESPRWLIEKGRLEEAKRSLKRLRGLSPEDVEVELELLKIKLLVEAEVAEGKASWGELF  288 (513)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCChHHHHHcCChHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhhhcccccccHHHhc
Confidence            9999999999888877788888887654443222221111000       000000        0011111111234443


Q ss_pred             h----cHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhhCCChhhHHHHHHHHHHHHHHHHHHHHHHhHHhhhcCCcc
Q 014481          334 R----SKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVET  406 (423)
Q Consensus       334 ~----~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~r~~~~  406 (423)
                      +    ++.++...+..+.+..+.+...+|.+.+++. .|.+... .....+.++..+++.+++.++.||+|||+...
T Consensus       289 ~~~~~~~~~i~~~l~~fqq~tG~~~~~~Y~~~if~~-~g~~~~~-~~~~~~~~~v~~~~t~~~~~lvd~~gRr~lll  363 (513)
T KOG0254|consen  289 SPKVRKRLIIGLLLQLFQQLTGINYVFYYSTTIFKS-AGLKSDT-FLASIILGVVNFLGTLVATYLVDRFGRRKLLL  363 (513)
T ss_pred             CcchHHHHHHHHHHHHHHHHhCCceEEeehHHHHHh-cCCCCch-HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHH
Confidence            3    2334445556666666677777888888875 4766443 55667777888888888999999999885433

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=99.88  E-value=3.2e-20  Score=179.47  Aligned_cols=289  Identities=13%  Similarity=0.111  Sum_probs=199.8

Q ss_pred             HHHHHHHHHHHHHHhhhhhhhhhHHHhh-hh--hCCCcchhhHHHHHHHHHHHhhhhhhhhHhhH-hcCchHHHHHHHHH
Q 014481          114 KLIGTTSLAFVICNMDKVNLSVAIIPMS-HR--FGWNSSVAGLVQSSFFWGYALSQLPGGWLAKI-FGGRKVLQTGVLIW  189 (423)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~G~r~~~~~~~~~~  189 (423)
                      +.+..+.+..+...+..+...+.+|.+. ++  +|++..+.+++.+.+.++..++++++|+++|| +|||+++.++.++.
T Consensus        10 ~~~~~l~~~~~~~~~~~~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~   89 (475)
T TIGR00924        10 KPLFTLFFVELWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVL   89 (475)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHH
Confidence            3344555666666777777777777754 44  89999999999999999999999999999999 89999999999999


Q ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHHhhcccchHhHHHHHHhcCCCCc---hhhHHHHHHhhhhhHHHHHHhhHHHhhhcc
Q 014481          190 SLATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEE---RSRAVSFVFGGLSFGSVAGLLLAPPIIENL  266 (423)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~---r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~  266 (423)
                      +++.++++ .+++++.+++.+++.|+|.|...+...+++++++|+++   |++++++++.+.++|.++||++++++.+..
T Consensus        90 ~~g~~~~~-~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~  168 (475)
T TIGR00924        90 MLGHFMLA-MSIYPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAENY  168 (475)
T ss_pred             HHHHHHHH-hcccHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHHHhc
Confidence            99887774 55566778889999999999999999999999998754   888999999999999999999999999989


Q ss_pred             CchHHHHHHHHHHHHHHHHHHhhccCCcCcC---CCCCcchhhhhhh-h---------------hhhhhHH---------
Q 014481          267 GWESVFYIFGLLGIAWFSGFKILQEGETSNG---ATLAPRSNYINMK-K---------------SLSASLE---------  318 (423)
Q Consensus       267 gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~-~---------------~~~~~~~---------  318 (423)
                      ||++.|++.++..++..+.+++.++..++..   .+..+++...... .               ..+....         
T Consensus       169 g~~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (475)
T TIGR00924       169 GYHVGFNLAAVGMVIGLLTFFAGRHMLRDIGSVPDPLSGQGKTYGKLLLALLAALALVFFCAWLMHHVVIANILLMTVTL  248 (475)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHcccccccCCCCCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence            9999999988665555444444333221111   1000000000000 0               0000000         


Q ss_pred             ------hhccccCCCcHHHhhhcHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhhCCChh----hHHHHHHHHHHHHHHH
Q 014481          319 ------EMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLT----EAAWVSILPPLASVLV  388 (423)
Q Consensus       319 ------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~s~~----~~~~~~~~~~~~~~~~  388 (423)
                            ......+.....+-.|...+..+.+..++....+....+.++.+..+..+.+..    ..+++.++..+..++.
T Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~Q~~s~l~l~~~~~~~~~~~~~~ip~~~~~~~n~~~iil~  328 (475)
T TIGR00924       249 AVIIFFFRLAFKPRLDAVARNKMYAYIVLFLEAVVFWVLYAQMPTSLNFFADNNMHHEMLGMSVPVIWFQSLNPFWVVVG  328 (475)
T ss_pred             HHHHHHHHHHHhccCCHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccceEECHHHHHhhhHHHHHHH
Confidence                  000000011111112223445555566666777777778888888765444322    2668888888888888


Q ss_pred             HHHHHHHhHHhhhcC
Q 014481          389 TSIAAQFADNLIATG  403 (423)
Q Consensus       389 ~~~~g~l~dr~~~r~  403 (423)
                      .++..++..++.+|+
T Consensus       329 ~p~~~~~~~~l~~~~  343 (475)
T TIGR00924       329 SPVLAMIWTRLGRKG  343 (475)
T ss_pred             HHHHHHHHHHHHhCC
Confidence            888777777777653

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.88  E-value=5e-21  Score=179.56  Aligned_cols=254  Identities=18%  Similarity=0.219  Sum_probs=193.8

Q ss_pred             hhHHHHHHHHHHHhhhhhhhhHhhHhcCchHHHHHHHHHHHHHHHH--HHhhhHHHHHHHHHHHHHhhcccchHhHHHHH
Q 014481          151 AGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALL--PLLAGFMPGLVLSRVLVGIGEGVSPSAATDLI  228 (423)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~i  228 (423)
                      .+.+.+++.+|.++|+++.|+++||+|||..+.++.++..++.++.  +...+++..++++|++.|+..|.......-++
T Consensus        62 wS~~vs~f~iG~~~Gs~~~~~la~~~GRK~~l~~~~~l~~~~~~~~~~s~~~~~~e~li~GR~i~Gl~~gl~~~~~pmyl  141 (485)
T KOG0569|consen   62 WSLIVSIFFIGGMIGSFSSGLLADRFGRKNALLLSNLLAVLAALLMGLSKSAPSFEMLILGRLIVGLACGLSTGLVPMYL  141 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence            5677889999999999999999999999999999877766665544  34457788999999999999999999999999


Q ss_pred             HhcCCCCchhhHHHHHHhhhhhHHHHHHhhHHH-hh-hccCchHHHHHHHHHHHHHHHHHHhhccCCcCcCCCCCc-chh
Q 014481          229 ARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPP-II-ENLGWESVFYIFGLLGIAWFSGFKILQEGETSNGATLAP-RSN  305 (423)
Q Consensus       229 ~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~-l~-~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  305 (423)
                      .|..|.+.||......+.+..+|.++|..++.- +. +...|++.+....+++++.++...++||+|+..-.+..+ ++.
T Consensus       142 ~E~sP~~~RG~~g~~~~~~~~~g~ll~~~~~l~~ilGt~~~W~~l~~~~~i~~~~~l~~l~~~PESPk~Ll~~k~~~~~A  221 (485)
T KOG0569|consen  142 TEISPKNLRGALGTLLQIGVVIGILLGQVLGLPSLLGTEDLWPYLLAFPLIPALLQLALLPFLPESPKYLLIKKGDEEEA  221 (485)
T ss_pred             hhcChhhhccHHHHHHHHHHHHHHHHHHHHccHHhcCCCcchHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHcCCHHHH
Confidence            999999999999999999999999999777643 33 445699999999999999999999999999875442222 221


Q ss_pred             hhhhh-----h-------hhhhh-HHhhccccCCCcHHHhhhcHHHHHH-----HHHHHHHHHHHHHHHhhhhHHHHHhh
Q 014481          306 YINMK-----K-------SLSAS-LEEMGESLKDVPWKAIFRSKAVWAM-----IYAHFCGSWGHYTCLSWLPTYFSEEL  367 (423)
Q Consensus       306 ~~~~~-----~-------~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-----~l~~~~~~~~~~~~~~~~~~~~~~~~  367 (423)
                      .+..+     +       ....+ .++..++.+..+++++++|+....-     .+..+.+.-+.+....|...++++ .
T Consensus       222 ~~sl~~y~G~~~~~~~~e~~~~e~~~~~~~~~~~~sl~~~~~~~~lR~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~-a  300 (485)
T KOG0569|consen  222 RKALKFYRGKEDVEAEIEEMLREIEEEELEKKKQISLRQLLKNPTLRRPLLIGIVVSFAQQFSGINAIFFYSTSIFKT-A  300 (485)
T ss_pred             HHHHHHHhCCCcchhHHHHHHHHHHHhccccccCCcHHHHhcCcchhHHHHHHHHHHHHHHhcCcceeHHHHHHHHHH-c
Confidence            11110     0       00111 1111222366778899988655433     223333334455566666677765 6


Q ss_pred             CCChhhHHHHHHHHHHHHHHHHHHHHHHhHHhhhcCCc
Q 014481          368 SLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVE  405 (423)
Q Consensus       368 g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~r~~~  405 (423)
                      |++..++.+.....++..++..+++.++.||+|||...
T Consensus       301 G~~~~~a~~an~~~g~v~~~~t~~~~~lid~~gRRpLl  338 (485)
T KOG0569|consen  301 GFTPEEAQYANLGIGIVNLLSTLVSPFLIDRLGRRPLL  338 (485)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHH
Confidence            99999999999999999999999999999999988543

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=99.87  E-value=2.2e-20  Score=180.30  Aligned_cols=272  Identities=18%  Similarity=0.166  Sum_probs=214.9

Q ss_pred             HHHHHHHHHHHHHHhhhhhhhhhHHHhhhhhCCCcchhhHHHHHHHHHHHhhhhhhhhHhhHhcCchHHHHHHHHHHHHH
Q 014481          114 KLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLAT  193 (423)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~  193 (423)
                      +.+..++++.++..++..+....++.+..+..-|+..++++..+..+..++.++++|.++||+.||++++.+.++.++..
T Consensus        10 ~~Fr~lw~a~~iS~lG~~~~~va~~wlv~~lt~S~~~valv~~a~~LP~~Llsl~aG~laDr~drrrili~~~~~~~~~~   89 (524)
T PF05977_consen   10 RNFRRLWIAQLISNLGDWMQTVALAWLVTQLTGSPLMVALVQAASTLPILLLSLFAGALADRFDRRRILILSQLLRALVA   89 (524)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHH
Confidence            34455677777888888888888888877888899999999999999999999999999999999999999988776655


Q ss_pred             HHHHHhh----hHHHHHHHHHHHHHhhcccchHhHHHHHHhcCCCCchhhHHHHHHhhhhhHHHHHHhhHHHhhhccCch
Q 014481          194 ALLPLLA----GFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWE  269 (423)
Q Consensus       194 ~~~~~~~----~~~~~~~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw~  269 (423)
                      ++++...    .+.+.+++.-++.|++.+...|+..+++.+..|+++...+.++.+...+++.++||.++|.++...|-.
T Consensus        90 ~~L~~l~~~~~~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPalgG~Lva~~G~~  169 (524)
T PF05977_consen   90 LLLAVLAFFGLLSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKEDLPAANALNSISFNIARIIGPALGGILVAFFGAA  169 (524)
T ss_pred             HHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHH
Confidence            4443322    346788899999999999999999999999999999999999999999999999999999999988999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhccCCcCcCCCCCcchhhhhhhhhhhhhHHhhccccCCCcHHHhhhcHHHHHHHHHHHHHH
Q 014481          270 SVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGS  349 (423)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  349 (423)
                      ++|.+.++..++.++....++++.++...   .++..   .+..            ...++.+.++|.+...++..++.+
T Consensus       170 ~~f~inalsfl~~i~~l~~~~~~~~~~~~---~~e~~---~~~l------------~~G~ryv~~~~~l~~~l~~~~~~~  231 (524)
T PF05977_consen  170 AAFLINALSFLISILALLRWKPPPPPSSL---PRERF---FSAL------------REGLRYVRSSPPLRSVLLRSFLFN  231 (524)
T ss_pred             HHHHHHHHHHHHHHHHHHHcccccccccc---chhhh---hhhH------------HHHHHHHhcchHHHHHHHHHHHHH
Confidence            99999888776655544444332221111   11100   0000            012456667777776666666666


Q ss_pred             HHHHHHHhhhhHHHHHhhCCChhhHHHHHHHHHHHHHHHHHHHHHHhHHhhhcC
Q 014481          350 WGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATG  403 (423)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~r~  403 (423)
                      +....+...+|.+.++.+|.++...|++.+..++|+++|.++.+++.+|+++++
T Consensus       232 l~~~a~~aLlPl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~  285 (524)
T PF05977_consen  232 LFASAVWALLPLFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSRR  285 (524)
T ss_pred             HhhhHHHHhhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcch
Confidence            655666778999999999999999999999999999999999999988877654

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=99.87  E-value=4.4e-20  Score=177.62  Aligned_cols=282  Identities=17%  Similarity=0.170  Sum_probs=200.2

Q ss_pred             HHHHHHHHHhhhhhhhhhHHHhhhhhCCCcchhhHHHHHHHHHHHhhhhhhhhHhhHhcCchHHHHHHHHHHHHHHHHHH
Q 014481          119 TSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPL  198 (423)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~  198 (423)
                      +++.....++........++.+..++|-+ ....|+.+...++..++.++.|+++|.||||..++.+.++..++.++. .
T Consensus        49 ~~~~~~~~~~~~~~~a~~l~~I~~diG~~-~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~-a  126 (599)
T PF06609_consen   49 FSLAVIAAYFVLVLPASILPYINADIGGS-DNWSWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVC-A  126 (599)
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHhcCCC-ccchHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHh-h
Confidence            33334444555556667788899999954 677899999999999999999999999999999999999999999887 5


Q ss_pred             hhhHHHHHHHHHHHHHhhcccchHhHHHHHHhcCCCCchhhHHHHHHhhhhhHHHHHHhhHHHhhhccCchHHHHHHHHH
Q 014481          199 LAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLL  278 (423)
Q Consensus       199 ~~~~~~~~~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw~~~~~~~~~~  278 (423)
                      .+++...++++..+.|+|.|... .....++|..|.|.|....++..........+++.++..+..+.+|||.|++.++.
T Consensus       127 tA~~~~~~iag~~l~GvgaG~~~-~~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~WRw~~~~~~i~  205 (599)
T PF06609_consen  127 TAQNMNTFIAGMVLYGVGAGVQE-LAALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAAHSGWRWIFYIFIIW  205 (599)
T ss_pred             cCCcHHHHHHHHHHHHHhhHHHH-HHHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhccCCCcchHHHHHHHH
Confidence            78888999999999999976665 45666899999999998888877776666778888888777777999999999888


Q ss_pred             HHHHHHHHHhhccCCcCcC--CC-CCcchhhhhhhh---------------------h----hhhh--------------
Q 014481          279 GIAWFSGFKILQEGETSNG--AT-LAPRSNYINMKK---------------------S----LSAS--------------  316 (423)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~---------------------~----~~~~--------------  316 (423)
                      ..+.++..+++-.++++..  .+ ...++...+.+-                     .    ..+.              
T Consensus       206 ~~i~~vl~~~fY~PP~~~~~~~~~~s~~~~l~~lD~IG~~L~~~Gl~LfLlgl~wgG~~~~~W~Sa~VIa~lviG~~~Lv  285 (599)
T PF06609_consen  206 SGIALVLIFFFYFPPPRAQLHGRKLSKREQLKELDWIGIFLFIAGLALFLLGLSWGGYPYYPWKSAHVIAPLVIGFVLLV  285 (599)
T ss_pred             HHHHHHHHHHHhCCCchhhhccccCcHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccchhhHHHHHHHHH
Confidence            7665443333322222211  11 111111111100                     0    0000              


Q ss_pred             ---HHhhcc--ccCCCcHHHhhhc-HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhhCCChh---hHHHHHHHHHHHHHH
Q 014481          317 ---LEEMGE--SLKDVPWKAIFRS-KAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLT---EAAWVSILPPLASVL  387 (423)
Q Consensus       317 ---~~~~~~--~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~s~~---~~~~~~~~~~~~~~~  387 (423)
                         .-|...  +.+-.| .+++|+ |.+...++..++....++....+.|......++-++.   ..++.....+.+..+
T Consensus       286 ~F~~wE~~~~~~~Pl~P-~~Lf~~~r~~~~~lvi~fi~G~~~~s~~~l~p~~~~~vf~~d~~~~~~~~~~s~~~~fg~~~  364 (599)
T PF06609_consen  286 AFVVWEWFGAPKDPLFP-HRLFKDRRGFAALLVISFISGMNFFSVNILWPQQVVNVFGSDPISITEIGWISSPVGFGSCA  364 (599)
T ss_pred             HHHHhhhhccCCCCcCC-HHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccceeehhhhhHHHHHHH
Confidence               001111  111122 467887 5566666677777777888888888888877776653   567788888999999


Q ss_pred             HHHHHHHHhHHhhhcCC
Q 014481          388 VTSIAAQFADNLIATGV  404 (423)
Q Consensus       388 ~~~~~g~l~dr~~~r~~  404 (423)
                      |.++.|.+..++++-|+
T Consensus       365 g~~i~g~l~~~ir~~Kw  381 (599)
T PF06609_consen  365 GAVILGLLFSKIRHIKW  381 (599)
T ss_pred             HHHHHHHHHHHccchhH
Confidence            99999999998875544

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=99.87  E-value=6.8e-20  Score=173.76  Aligned_cols=266  Identities=11%  Similarity=0.037  Sum_probs=200.2

Q ss_pred             HHHHHHHHHHHHhhhhhhhhhHHHhhhhhCCCcchhhHHH--HHHHHHHHhhhhhh-hhHhhHhcCchHHHHHHHHHHH-
Q 014481          116 IGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQ--SSFFWGYALSQLPG-GWLAKIFGGRKVLQTGVLIWSL-  191 (423)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~--~~~~~~~~~~~~~~-g~l~dr~G~r~~~~~~~~~~~~-  191 (423)
                      +..+...++.+++......+.+|.+.++.|.+.+++|++.  ++..+...+.++++ ++..||+||||.+++...+... 
T Consensus         3 ~~~~~~ly~~~g~~~~~~~p~lp~~l~~~g~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~~g~r~~~i~~~~~~~~~   82 (390)
T TIGR02718         3 VITLGLLYLSQGIPIGLAMDALPTLLREDGAPLTALAFLPLVGLPWVVKFLWAPLVDNWWSWRLGRRRSWVLPMQCLVSA   82 (390)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCcchhHHHHHHHHHHH
Confidence            4566777888899999999999999999999999999974  56677887888888 4479999999997666533222 


Q ss_pred             HHHHHHH--hh-hHHHHHHHHHHHHHhhcccchHhHHHHHHhcCCCCchhhHHHHHHhhhhhHHHHHHhhHHHhhhccCc
Q 014481          192 ATALLPL--LA-GFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGW  268 (423)
Q Consensus       192 ~~~~~~~--~~-~~~~~~~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw  268 (423)
                      .......  .. .....++...++.++..+...+...++..+..++++++.+.+....+..+|.++|+...+++.+..||
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~~~~~~~~~~~g~~lG~~~g~~~~~~l~~~~gw  162 (390)
T TIGR02718        83 CLASLALVGPDVAGAGWAVGLLACASLASATQDIATDGMAAEHFNGRTLAKGNAVQIAGVMIGFFGGGAGTLVLFGKFGQ  162 (390)
T ss_pred             HHHHHHcCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCH
Confidence            1222211  12 22233444555566777778888888888988888888888889888899999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHhhccCCcCcCCCCCcchhhhhhhhhhhhhHHhhccccCCCcHHHhhhcHHHHHHHHHHHHH
Q 014481          269 ESVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCG  348 (423)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  348 (423)
                      |..|++.+++.++..+..++++++++++.+   .+.+                   +..++++++|+|.++...+..++.
T Consensus       163 ~~~f~~~a~l~~~~~~~~~~~~~~~~~~~~---~~~~-------------------~~~~~~~~l~~~~~~~~~~~~~l~  220 (390)
T TIGR02718       163 RPAFLLVACVPLASLVCVLWLKDRAVASPE---APLA-------------------RRASLFRFFRRPLAWSLLALALLS  220 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCCCcCccc---cchh-------------------hHHHHHHHHcCcCHHHHHHHHHHH
Confidence            999999998887765555555443321110   0000                   001256788999888888888888


Q ss_pred             HHHHHHHHhhhhHHHHHhhCCChhhHHHHHHHHHH-HHHHHHHHHHHHhHHhhhcCC
Q 014481          349 SWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPL-ASVLVTSIAAQFADNLIATGV  404 (423)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~-~~~~~~~~~g~l~dr~~~r~~  404 (423)
                      .........+.+.|+++ .|+++.+.+.+....++ ..+++.++.|++.||+++|+.
T Consensus       221 ~~~~~~~~~~~~~~l~~-~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~  276 (390)
T TIGR02718       221 AMTAVSGFGLSKLYLVD-AGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRT  276 (390)
T ss_pred             HHHHHHHHHHhhHHHHh-cCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence            88788888899999987 69999999998887764 667788999999999998854

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=99.85  E-value=6.6e-20  Score=161.93  Aligned_cols=251  Identities=15%  Similarity=0.060  Sum_probs=170.0

Q ss_pred             hhhCCCcchhhHHHHHHHHHHHhhhhhhhhHhhHhcCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcccch
Q 014481          142 HRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSRVLVGIGEGVSP  221 (423)
Q Consensus       142 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~  221 (423)
                      +..+.+..-.|.+.+.+.++.++.++.+|.++||+|||+++.++....++...+. +.++++..+++.|++.|+..+-. 
T Consensus        61 ~~~~~~~~yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~-~~S~~F~afv~aR~l~Gi~kgnl-  138 (451)
T KOG2615|consen   61 EPDGASVFYAGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLW-ALSRNFAAFVLARFLGGIFKGNL-  138 (451)
T ss_pred             CcccccchhhhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhhhccCch-
Confidence            3334455667999999999999999999999999999999999999999977776 68888877777799999997655 


Q ss_pred             HhHHHHHHhcCCCCchhhHHHHHHhhhhhHHHHHHhhHHHhhh---ccCchH-HH--HHHHHHHHH-HHHHHHhhccCCc
Q 014481          222 SAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIE---NLGWES-VF--YIFGLLGIA-WFSGFKILQEGET  294 (423)
Q Consensus       222 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~---~~gw~~-~~--~~~~~~~~~-~~~~~~~~~~~~~  294 (423)
                      .+..++++|++++++|+.+++.+.+.+++|.++||.+||++..   ..|--+ ++  ++..+++.. .....+++||+-+
T Consensus       139 ~v~rAiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~f~~~~g~~p~alP~~~v~i~a~~~v~~~~~~lpETL~  218 (451)
T KOG2615|consen  139 SVIRAIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQFSSISGSYPFALPCLLVFILAAGDVTFFPWFLPETLP  218 (451)
T ss_pred             HHHHHHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHhhHhhhccCchHHHHHHHHHHHHHHHHHHHHhCCcccc
Confidence            7789999999999999999999999999999999999999987   333211 11  222222222 3445677788755


Q ss_pred             CcCCCCCcchhhhhhhhhhhhhHHhhccccCCCcHHHhhhcHH-------HHHHHHHHHHHHHHHHHHHhhhhHHHHHhh
Q 014481          295 SNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKA-------VWAMIYAHFCGSWGHYTCLSWLPTYFSEEL  367 (423)
Q Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  367 (423)
                      .+++.....+    ..+...++ .+..+ ..+..-....+|+.       ...+.+-.+++...+.+.......+....+
T Consensus       219 ~rk~~~~~~~----~~~~~~~~-~~~~~-~~~~~~v~~lrn~p~~~~i~~~~i~~l~~~ly~~l~s~~~~t~~~l~~~rf  292 (451)
T KOG2615|consen  219 LRKRNDEHST----LQEAADDR-LALLK-FARIFKVAALRNPPLLDFISVLRIFGLHYFLYLELFSGLENTVLFLTHGRF  292 (451)
T ss_pred             chhhcccccc----hhhhhhhh-hhhcc-hhhhhhhhhhcCccccchHHHHHHHHHHHHHHHHHHHHHHhhHHHhhcCcc
Confidence            4433311100    00000000 00000 00000012233322       122344455555555555566666656779


Q ss_pred             CCChhhHHHHHHHHHHHHHHHHHHHHHHhHHhh
Q 014481          368 SLNLTEAAWVSILPPLASVLVTSIAAQFADNLI  400 (423)
Q Consensus       368 g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~  400 (423)
                      |+++.+.|.+++..++.+.+.+....+..+|..
T Consensus       293 g~ss~~~G~vl~~tGl~m~~~ql~~~~~l~~~~  325 (451)
T KOG2615|consen  293 GYSSMQQGKVLSTTGLLMLVIQLALVPILPRYK  325 (451)
T ss_pred             CCChhhheeeeehhhHHHHHHHHhccccccccc
Confidence            999999999999888888877777666666654

>TIGR00889 2A0110 nucleoside transporter

Probab=99.84  E-value=5.6e-19  Score=168.47  Aligned_cols=259  Identities=12%  Similarity=0.006  Sum_probs=179.2

Q ss_pred             HHHHHHHHHhhhhhhhhhHHH-hhhhhCCCcchhhHHHHHHHHHHHhhhhhhhhHhhHhcC-chHHHHHHHHHHHHHHHH
Q 014481          119 TSLAFVICNMDKVNLSVAIIP-MSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGG-RKVLQTGVLIWSLATALL  196 (423)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~-r~~~~~~~~~~~~~~~~~  196 (423)
                      +.+.+++.+....+..+.++. +.+++|++..++|++.+++.++..++++++|+++||+|+ |+++.++.++.++...+.
T Consensus         7 ~~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr~g~~r~~~~~~~~~~~~~~~~~   86 (418)
T TIGR00889         7 LKFMSFLQWFIWGSWLVTLGSYMSKTLHFSGAEIGWVYSSTGIAAILMPILVGIIADKWLSAQKVYAVCHFAGALLLFFA   86 (418)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHH
Confidence            455566666667766555444 667899999999999999999999999999999999965 777787777776666565


Q ss_pred             HHhhhHHHHHHHHHHHHHhhcccchHhHHHHHHhc--------CCCCchhhHHHHHHhhhhhHHHHHHhhHHHhhhccCc
Q 014481          197 PLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARS--------IPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGW  268 (423)
Q Consensus       197 ~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~i~~~--------~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw  268 (423)
                       ...++++.+++.|++.|++.+...+...++...+        .....|.+.+|      .+|.++||.+++.+....+|
T Consensus        87 -~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~r~~G------~lG~~ig~~l~g~l~~~~~~  159 (418)
T TIGR00889        87 -AQVTTPAGMFPVLLANSLAYMPTIALTNSISYANLPQAGLDVVTDFPPIRVMG------TIGFIAAMWAVSLLDIELSN  159 (418)
T ss_pred             -HHhcCHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhhcCCCchhcCCCeeeeh------hHHHHHHHHHHHHhcccchh
Confidence             4556778888899999998777777665553222        22223444444      47888999998887433335


Q ss_pred             hHHHHHHHHHHHHHHHHHHhhccCCcCcCCCCCcchhhhhhhhhhhhhHHhhccccCCCcHHHhhhcHHHHHHHHHHHHH
Q 014481          269 ESVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCG  348 (423)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  348 (423)
                      . .|++.+++.++..+..+.++|+++.++++.   ...   .+            ......++++|+|.++.+.+..++.
T Consensus       160 ~-~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~---~~~---~~------------~~~~~~~~~~k~~~~~~~~~~~~~~  220 (418)
T TIGR00889       160 I-QLYITAGSSALLGVFALTLPDIPVAKSTAK---MSI---KV------------MLGLDAFILFKNKRMAIFFFFSMLL  220 (418)
T ss_pred             H-HHHHHHHHHHHHHHHHhcCCCCCCCccccc---cCH---HH------------HhhhhHHHHhcCCCeeeHHHHHHHH
Confidence            4 455666655555545556665532211110   000   00            0001235678889888887777777


Q ss_pred             HHHHHHHHhhhhHHHHHhhCCCh--------hhHHHHHHHHHHHHHHHHHHHHHHhHHhhhcCC
Q 014481          349 SWGHYTCLSWLPTYFSEELSLNL--------TEAAWVSILPPLASVLVTSIAAQFADNLIATGV  404 (423)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~g~s~--------~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~r~~  404 (423)
                      .........+++.|+++ .|.++        ...+...++..+..+++.++.|++.||+|+|+.
T Consensus       221 ~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~  283 (418)
T TIGR00889       221 GAPLQITNIFGNGFLHE-FGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKV  283 (418)
T ss_pred             HhHHHHHHHhHHHHHHH-hcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHH
Confidence            66666667788888876 46554        556888899999999999999999999998854

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=99.83  E-value=2.7e-19  Score=176.07  Aligned_cols=255  Identities=17%  Similarity=0.097  Sum_probs=185.6

Q ss_pred             hhhhCCCcchhhHHHHHHHHHHHhhhhhhhhHhhHhcCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcccc
Q 014481          141 SHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSRVLVGIGEGVS  220 (423)
Q Consensus       141 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~  220 (423)
                      .+.++.+.....+..+++.+|.++|++++|+++||+|||+++++++++..++.++. +++++++.++++|++.|++.++.
T Consensus       110 ~~~~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~-a~a~~~~~~~~~Rfl~G~~~~~~  188 (521)
T KOG0255|consen  110 WNLVCDSSTLVALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILT-AFAPNYWMFLIFRFLSGFFGSGP  188 (521)
T ss_pred             hceeeCcHhHHHHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHH-HHhCcHHHHHHHHHHHHhhccch
Confidence            35567788889999999999999999999999999999999999999999998666 78899999999999999999999


Q ss_pred             hHhHHHHHHhcCCCCchhhHHHHHHhhhhhHHHHHHhhHHHhhhccCchHHHHHHHHHHHHHHHHHHhhccCCcCcCCCC
Q 014481          221 PSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFSGFKILQEGETSNGATL  300 (423)
Q Consensus       221 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (423)
                      ......++.|++++++|+.+..+ ......++.+++++++++..  +||+.+++..++.++.++..++.+|+++....+.
T Consensus       189 ~~~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~--~Wr~~~~~~~~~~~~~~~~~~l~~Es~rwl~~~g  265 (521)
T KOG0255|consen  189 LTVGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITR--DWRWLFWIISIPSGLFLLLWFLPPESPRWLLSKG  265 (521)
T ss_pred             hHHhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHHHHHccCcChHHHHHcC
Confidence            99999999999999999999999 88888899999999999887  8999999999999887777666668776544433


Q ss_pred             Ccchhhhhhhh---------hh----hhh--H--HhhccccCCCcHHHhhhcHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Q 014481          301 APRSNYINMKK---------SL----SAS--L--EEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLSWLPTYF  363 (423)
Q Consensus       301 ~~~~~~~~~~~---------~~----~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  363 (423)
                      +.++.....++         ..    ...  .  .......+...+.++++.|.+....+...+..+.......-++...
T Consensus       266 ~~~~a~~~l~~~a~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~y~gl~~~~  345 (521)
T KOG0255|consen  266 RIDEAIKILKKIAKLNGRKLSVKELLRLELLLRPLKLLFTEPKISFLDLFRTPRLRYRTLYLLFIWFVFSLVYYGLSLNV  345 (521)
T ss_pred             chHHHHHHHHHHHhhcCCCCCcHHHHHHHHHhhHhhhhccCCCCchhhhhcCHHHHHHHHHHHHHHHHHhHHHHhhhhhh
Confidence            32221111111         00    000  0  0111112334577888888655444444444433333333333333


Q ss_pred             HHhhCCChhhHHHHHHHHHHHHHHHHHHHHHHhHHhhhcC
Q 014481          364 SEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATG  403 (423)
Q Consensus       364 ~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~r~  403 (423)
                      . .+|.+..   ......+.....+....+...|++|||.
T Consensus       346 ~-~lg~~~~---~~~~~~~~~~~p~~~~~~~~~~~~gR~~  381 (521)
T KOG0255|consen  346 S-GLGGNIY---LNFTLSGLVELPAYFRNGLLLPEFGRRP  381 (521)
T ss_pred             h-hcCchHH---HHHHHHHHHHhhHHHHHHHHHHHhCcHH
Confidence            3 2454432   3344444577778888889999998773

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=99.83  E-value=2.7e-19  Score=172.45  Aligned_cols=258  Identities=14%  Similarity=0.123  Sum_probs=184.8

Q ss_pred             Hhhhhhhhhh-HHHhhhhhCCCcchhhHHHHHHHHHHHhhhhhhhhHhhH----hcCch-HHHHHHHHHHHHHHHHHHhh
Q 014481          127 NMDKVNLSVA-IIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKI----FGGRK-VLQTGVLIWSLATALLPLLA  200 (423)
Q Consensus       127 ~~~~~~~~~~-~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr----~G~r~-~~~~~~~~~~~~~~~~~~~~  200 (423)
                      .........+ .+.+.+++|+++.++|++.++..+..++..|+.|+++||    +|||| .++++....+++.+++....
T Consensus        12 ~~~~~~~~~~l~~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~~~~   91 (437)
T TIGR00792        12 NFIFAIVSTYLLFFYTDVLGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLFTTP   91 (437)
T ss_pred             HHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHHhCC
Confidence            3334444444 445777899999999999999999999999999999998    67755 56667777776666553222


Q ss_pred             h-----HHHHHHHHHHHHHhhcccchHhHHHHHHhcC-CCCchhhHHHHHHhhhhhHHHHHHhhHHHhhh-------ccC
Q 014481          201 G-----FMPGLVLSRVLVGIGEGVSPSAATDLIARSI-PLEERSRAVSFVFGGLSFGSVAGLLLAPPIIE-------NLG  267 (423)
Q Consensus       201 ~-----~~~~~~~~~~l~G~~~~~~~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~-------~~g  267 (423)
                      +     ....+++.+++.+++.+...++..++..+.. ++++|++..++.+.+..+|..+++.+.+.+..       ..+
T Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~g  171 (437)
T TIGR00792        92 DFSATGKLVYAYITYILLGLFYSFVNIPYWSLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVLPLVSYFGGGDDKFG  171 (437)
T ss_pred             CCCcchHHHHHHHHHHHHHHHHHhhcccHhhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccc
Confidence            1     1355667788888888887777888888887 46889999999998888888887776655542       458


Q ss_pred             chHHHHHHHHHHHHHHHHH-HhhccCCcCcCCCCCcchhhhhhhhhhhhhHHhhccccCCCcHHHhhhcHHHHHHHHHHH
Q 014481          268 WESVFYIFGLLGIAWFSGF-KILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHF  346 (423)
Q Consensus       268 w~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  346 (423)
                      |++.+++.+++.++..+.. +..+|+++....+  ++++     ..            ....++.+++||.++..++..+
T Consensus       172 ~~~~~~i~~~l~~~~~~~~~~~~~e~~~~~~~~--~~~~-----~~------------~~~~~~~l~~~~~~~~~~~~~~  232 (437)
T TIGR00792       172 WFMFALVLALIGVVSLIICFFGTKERYSEIPKN--IEKK-----LS------------LKQIFKALFKNDQLLILCLAYL  232 (437)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCEecCCCCCcc--cccC-----CC------------HHHHHHHHhCCHHHHHHHHHHH
Confidence            9999999888877665443 4444433111000  0000     00            0012567889999998888888


Q ss_pred             HHHHHHHHHHhhhhHHHHHhhCCChhhHHHHHHHHHHHHHHHHHHHHHHhHHhhhcCC
Q 014481          347 CGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGV  404 (423)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~r~~  404 (423)
                      +...+......+.+.|.+..++ ++...+.+.....++.+++.++.+++.||+|+|+.
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~  289 (437)
T TIGR00792       233 FYNLAFNIKNGVQVYYFTYVLG-DPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKIL  289 (437)
T ss_pred             HHHHHHHHHcchhheeEeeecC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHH
Confidence            8877777766666667665555 45566777778889999999999999999998744

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=99.83  E-value=1.2e-18  Score=153.13  Aligned_cols=188  Identities=18%  Similarity=0.168  Sum_probs=162.7

Q ss_pred             chhHHHHHHHHHHHHHHHhhhhhhhhhHHHhhhhhCCCcchhhHHHHHHHHHHHhhhhhhhhHhhHhcCchHHHHHHHHH
Q 014481          110 PQRYKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIW  189 (423)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~  189 (423)
                      +.+|........+.....+.....+.+.|.+.+.+|.+..+..++......+..+++..+|.++|++|||+.+.+..+..
T Consensus        74 rfq~yl~~~ag~gwmad~m~~m~~s~i~~~l~~~w~~s~~q~~llt~~v~~gmllga~~w~l~~d~~grr~~f~~T~l~t  153 (528)
T KOG0253|consen   74 RFQWYLFFVAGMGWMADAMEMMLLSLILPALDEVWGPSEGQAPLLTLSVFLGMLVGAMVWGLSADTIGRRKGFNLTFLVT  153 (528)
T ss_pred             cchhhHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHhhhhhhhhhhheehhhhhcchhhhhhHHHH
Confidence            34567777777777777777777777788899999999999999999999999999999999999999999999998887


Q ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHHhhcccchHhHHHHHHhcCCCCchhhHHHHHHhhhhhHHHHHHhhHHHhhhccCch
Q 014481          190 SLATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWE  269 (423)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw~  269 (423)
                      ++...+- ..++++..+++.|.+.|+|.|+ .|...++-.|..|..+|..-+-.. ..+.+|.++...++-.++..+|||
T Consensus       154 ~v~~~is-~~spnf~~L~~f~~l~~~g~gg-~pv~~~~yle~lp~~~r~~~~V~~-~~waig~v~ea~law~vm~~~gwr  230 (528)
T KOG0253|consen  154 GVFGVIS-GASPNFASLCVFRALWGFGVGG-LPVDSAIYLEFLPSSHRWLLTVMS-FFWAIGQVFEALLAWGVMSNFGWR  230 (528)
T ss_pred             HHHHHhh-cCCCCeehhhHHHHHHhccCCC-ccHhHHHHHHhccCcCCCcchhHH-HHHHHHHHHHHHHHHHHHHhhhHH
Confidence            7776665 5778889999999999999999 899999999999988888877766 899999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhccCCcCcCCCC
Q 014481          270 SVFYIFGLLGIAWFSGFKILQEGETSNGATL  300 (423)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (423)
                      |..........+.+...+.++|+++....+.
T Consensus       231 ~~l~~~~~pl~~~a~f~~w~~ESpRf~~~~G  261 (528)
T KOG0253|consen  231 YLLFTSSTPLMFAARFLVWVYESPRFYLAKG  261 (528)
T ss_pred             HHHHHHHhHHHHHHHHHhhcccCcchhhhcC
Confidence            9998888888888888888999887654443

>PTZ00207 hypothetical protein; Provisional

Probab=99.82  E-value=2.5e-18  Score=166.60  Aligned_cols=288  Identities=11%  Similarity=0.111  Sum_probs=199.3

Q ss_pred             hHHHHHHHHHHHHHHHhhhhhhhhhHHHhhhhhCCCcchhhHHHHHHHHHHHhhhhhhhhHhhHhcCchHHHHHHHHHHH
Q 014481          112 RYKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSL  191 (423)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~  191 (423)
                      ||..+......... ....+.++.+.+.+.+++|++..+++++.++. ....+++++.|++.||+|+|++++++.+++++
T Consensus        26 Rw~~lva~~~~~~~-~g~~y~fsv~s~~L~~~lgls~~~l~~i~svg-~~~g~~~lp~G~L~Dr~G~R~vllig~ll~~i  103 (591)
T PTZ00207         26 RFALLVLGAFCSIC-TSFMYAFNLISGAMQARYNLTQRDLSTITTVG-IAVGYFLLPYSFIYDYLGPRPIFVLSMTVFCL  103 (591)
T ss_pred             hHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence            55554444433333 33345666778889999999999999998874 34556778899999999999999999999999


Q ss_pred             HHHHHHHhh-----hHHHHHHHHHHHHHhhcccchHhHHHHHHhcCCCCchhhHHHHHHhhhhhHHHHHHhhHHHhhhcc
Q 014481          192 ATALLPLLA-----GFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENL  266 (423)
Q Consensus       192 ~~~~~~~~~-----~~~~~~~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~  266 (423)
                      +.++++...     .+++.+++.|++.|+|.+...+.....+.+|+| ++||++.|+...+.++|..+.+.+...+.. .
T Consensus       104 G~ll~ala~~~~i~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~-~  181 (591)
T PTZ00207        104 GTLLFALTFQEVIEGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFFS-D  181 (591)
T ss_pred             HHHHHHHHhcccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-H
Confidence            998875431     478899999999999999888999999999997 889999999999999999864444444433 3


Q ss_pred             CchHHHHHHHHHHHHHHHHHHhhccCCcCcCC--CC---Ccchhh--h--------------hh----------------
Q 014481          267 GWESVFYIFGLLGIAWFSGFKILQEGETSNGA--TL---APRSNY--I--------------NM----------------  309 (423)
Q Consensus       267 gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~---~~~~~~--~--------------~~----------------  309 (423)
                      +|++.|++.+++.++..++...+.+.++....  ++   .++++.  .              ..                
T Consensus       182 ~~~~~fl~l~vl~~vv~ll~~~~vr~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~q~~p~~~f~~~~~i~~~l~~yl~~  261 (591)
T PTZ00207        182 NTSAYFFFLMSFALVVGILAIVFMRLPPFHLTGYQEKHLDEEEKAQRLMRKGVYLKQKAPMWRFVYGFVILIILIVFLPL  261 (591)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhheeCCcchhhcccccCCCHHHHHHHhhhhhhhhhcCCCceehhhHHHHHHHHHHHHHH
Confidence            68888998888887665444443333321110  00   000000  0              00                


Q ss_pred             --------h--h---------hh---------------------h-h-h--H------------Hhh---c---c---cc
Q 014481          310 --------K--K---------SL---------------------S-A-S--L------------EEM---G---E---SL  324 (423)
Q Consensus       310 --------~--~---------~~---------------------~-~-~--~------------~~~---~---~---~~  324 (423)
                              .  +         ..                     . + +  .            .+.   .   +   +.
T Consensus       262 ~~~~~~~~~~~~~~~~~~~~v~~~lll~~p~l~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~  341 (591)
T PTZ00207        262 QGALVAYLKLGSNFKVGFAVTVIVLTVIFPFMAFPLTTFDGKRPHDDSDGKAKEHVEAGEEVSAAEDKVVETDVDYIAPQ  341 (591)
T ss_pred             HHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCcCCCccccccccccccccccccccccccccccCCCCC
Confidence                    0  0         00                     0 0 0  0            000   0   0   01


Q ss_pred             CCCcHHHhhhcHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhhCCChhh--HHHHHHHHHHHHHHHHHHHHHHhHHhhhc
Q 014481          325 KDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTE--AAWVSILPPLASVLVTSIAAQFADNLIAT  402 (423)
Q Consensus       325 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~--~~~~~~~~~~~~~~~~~~~g~l~dr~~~r  402 (423)
                      ...++.+.+++..+|++.+..++...........+.++.+..-|.+...  ...+.++.++++.+|++..|.+.....+|
T Consensus       342 ~~~t~~q~l~~~d~Wll~~~~~cg~g~gl~~~~N~~qI~~sl~g~~~~~~~~~~~vsL~si~~~~GRl~~g~~~~~~~~~  421 (591)
T PTZ00207        342 FQETFIEGLKTARLWCLLWSIFCCVGAHFVIIFNARFIYTALAGEAPDDALNTLLTVLNGVGSAVGRLCMSYFEIWSQKR  421 (591)
T ss_pred             CcchHHHHHhchhHHHHHHHHHHhhCchheeeecHHHHHHHhcCCCCCccceeeehhhhhHHHHhhHHHHHHHHHHHHhh
Confidence            1126778888999999999999998888888888888887632763333  33378899999999999999998444444


Q ss_pred             C
Q 014481          403 G  403 (423)
Q Consensus       403 ~  403 (423)
                      +
T Consensus       422 ~  422 (591)
T PTZ00207        422 R  422 (591)
T ss_pred             c
Confidence            3

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=99.81  E-value=1.5e-17  Score=161.86  Aligned_cols=168  Identities=15%  Similarity=0.204  Sum_probs=134.9

Q ss_pred             HHHHHHHHHHHHhhhhhhhhhHHH-hhhhhCCCcchhhHHHHHHHHHHHhhhhhhhhHhhH-hcCchHHHHHHHHHHHHH
Q 014481          116 IGTTSLAFVICNMDKVNLSVAIIP-MSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKI-FGGRKVLQTGVLIWSLAT  193 (423)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~G~r~~~~~~~~~~~~~~  193 (423)
                      +..+++..+...+..+.....++. +.+++|++..+.+++.+.+........+++|+++|| +|||++++++.++.+++.
T Consensus        23 ~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~~~ig~  102 (500)
T PRK09584         23 FYLIFSIELWERFGYYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVLAIGY  102 (500)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHH
Confidence            334445555555565555555555 568899999999998888777766777899999999 599999999999999888


Q ss_pred             HHHHHhhhHHHHHHHHHHHHHhhcccchHhHHHHHHhcCCCCc--hhhHHHHHHhhhhhHHHHHHhhHHHhhhccCchHH
Q 014481          194 ALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEE--RSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESV  271 (423)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~--r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw~~~  271 (423)
                      +++....++.+.+++.+++.|++.|...+...+++++++|+++  |+.++++++.+.++|..+||.+++++.+..|||+.
T Consensus       103 ~l~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~g~~~~  182 (500)
T PRK09584        103 ALVAWSGHDAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWLAAKYGWSVA  182 (500)
T ss_pred             HHHHHhcccHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHHHHHhhCHHHH
Confidence            7775433455667788999999999988999999999998643  45688999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHH
Q 014481          272 FYIFGLLGIAWF  283 (423)
Q Consensus       272 ~~~~~~~~~~~~  283 (423)
                      |++.++..++.+
T Consensus       183 F~i~~i~~~i~~  194 (500)
T PRK09584        183 FALSVVGMLITV  194 (500)
T ss_pred             HHHHHHHHHHHH
Confidence            999876555443

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=99.80  E-value=7.1e-17  Score=154.11  Aligned_cols=173  Identities=17%  Similarity=0.187  Sum_probs=134.2

Q ss_pred             HHHHHHHHHHHHHHhhhhhhhhhHHH-hhhhhCCCcchhhHHHHHHHHHHHhhhhhhhhHhhHh-cCchHHHHHHHHHHH
Q 014481          114 KLIGTTSLAFVICNMDKVNLSVAIIP-MSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIF-GGRKVLQTGVLIWSL  191 (423)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-G~r~~~~~~~~~~~~  191 (423)
                      +.+..++...+...+..+.+...+|. +.+++|++..+.+.+.+.+.....++++++|+++||+ |||++++++.++.++
T Consensus         9 ~~l~~l~~~~~~e~fs~Yg~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~l   88 (493)
T PRK15462          9 RAIYYVVALQIWEYFSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAI   88 (493)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHH
Confidence            33444555555555666666666666 4667899999999999999999999999999999999 999999999999888


Q ss_pred             HHHHHHHhhhHHHHHHHHHHHHHhhcccchHhHHHHHHhcCCCC--chhhHHHHHHhhhhhHHHHHHhhHHHhhhccCch
Q 014481          192 ATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLE--ERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWE  269 (423)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~i~~~~~~~--~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw~  269 (423)
                      +.+++.....+...+.++..+.++|.|...+...++++|.+|++  +|.+++++.+.+.++|+.++|.+.+++.+..||+
T Consensus        89 g~lll~~~~~~~~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~Gw~  168 (493)
T PRK15462         89 GHVVLGASEIHPSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEEYSWA  168 (493)
T ss_pred             HHHHHHHhhcchhHHHHHHHHHHHhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhhhChH
Confidence            87665322222233444444555666777777889999999875  6999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHH
Q 014481          270 SVFYIFGLLGIAWFSGF  286 (423)
Q Consensus       270 ~~~~~~~~~~~~~~~~~  286 (423)
                      +.|.+.++..++.++.+
T Consensus       169 ~~F~iaaigm~l~li~~  185 (493)
T PRK15462        169 MGFGLAAVGMIAGLVIF  185 (493)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            99998766544444433

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=99.80  E-value=1.4e-22  Score=196.08  Aligned_cols=282  Identities=19%  Similarity=0.232  Sum_probs=194.7

Q ss_pred             HHHHHHHhhhhhhhhhHHHhh--hhhCCC---------cchhhHHHHHHHHHHHhhhhhhhhHhhHhcCchHHHHHHHHH
Q 014481          121 LAFVICNMDKVNLSVAIIPMS--HRFGWN---------SSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIW  189 (423)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~--~~~~~s---------~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~  189 (423)
                      ++.+..+++....+...+...  .+++.+         ..+.+++.+...++..+|++++|.++||+|||+.++++.++.
T Consensus         7 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~~~   86 (451)
T PF00083_consen    7 LGGFLFGYDLGLIGSFASLLGFLQFFGWSSSESSCEKSSLLSSLLTSSFFIGAIVGALIFGFLADRYGRKPALIISALLM   86 (451)
T ss_pred             HHHHHHHHHHHHHhhHHhhhhhhhccccccccccccchHHHHHHHHHHHHhhhccccccccccccccccccccccccccc
Confidence            444666666666655554433  222222         234688999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhh---HHHHHHHHHHHHHhhcccchHhHHHHHHhcCCCCchhhHHHHHHhhhhhHHHHHHhhHHHhhhcc
Q 014481          190 SLATALLPLLAG---FMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENL  266 (423)
Q Consensus       190 ~~~~~~~~~~~~---~~~~~~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~  266 (423)
                      .++.++. .+++   +++.++++|++.|++.|+..+....++.|..|+++|++..++.+.+..+|.+++..++..+.+..
T Consensus        87 ~i~~~~~-~~~~~~~~~~~~~~~R~~~G~~~g~~~~~~~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~  165 (451)
T PF00083_consen   87 IIGSILI-AFAPSYNNFWMLLIGRFLIGFGIGGAYVVSPIYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIVSYYS  165 (451)
T ss_pred             ccccccc-cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            9998877 4566   78999999999999999999999999999999999999999999999999999988876554433


Q ss_pred             ---CchHHHHHHHHHHHHHHHHHHhhccCCcCcCCCCCcchhhhhhhh-----hhhhhHHhhcccc-----CCCcHHHhh
Q 014481          267 ---GWESVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKK-----SLSASLEEMGESL-----KDVPWKAIF  333 (423)
Q Consensus       267 ---gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~-----~~~~~~~~~  333 (423)
                         +||+.+++.+++.++.++..+++||+|+....+.+.++.+...++     ..+.+.++..++.     .+..+++++
T Consensus       166 ~~~~Wr~~~~~~~~~~l~~~~~~~~~pESP~wL~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  245 (451)
T PF00083_consen  166 DNWGWRILLIFGAIPSLLVLLLRFFLPESPRWLLSKGRDEEAEKVLRKLRGKEIEDEEIEEIKAEKKESQESKASWRDLF  245 (451)
T ss_pred             ccccccccccccccccccccccccccccccceecccccccccccccccccccccccccccccccccccccccceeeeecc
Confidence               499999999999888777788999998765444433322211111     0111111111111     113466777


Q ss_pred             hcHH----HHHHHHHHHHH-HHHHHHHHhhhhHHHHHhhCCChhhHHHHHHHHHHHHHHHHHHHHHHhHHhhhcCCcc
Q 014481          334 RSKA----VWAMIYAHFCG-SWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVET  406 (423)
Q Consensus       334 ~~~~----~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~r~~~~  406 (423)
                      +++.    +...+...++. ..+......+.+.++++ .|.+..  -.......+...++.+++.++.||+|||+...
T Consensus       246 ~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~i~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~GRr~~~i  320 (451)
T PF00083_consen  246 RNKKYRKRLLIALLLQFFQQFSGINFIFYYSPSIFEN-AGISNS--FLATLILGLVNFLGTLLAIFLIDRFGRRKLLI  320 (451)
T ss_pred             ccccccccccccccccccccccccccccccccccccc-cccccc--cccccccccccccccccccccccccccccccc
Confidence            7643    22222222222 22333444555555544 576665  23344555667778888889999999996544

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=99.78  E-value=5.9e-17  Score=146.96  Aligned_cols=283  Identities=13%  Similarity=0.126  Sum_probs=214.1

Q ss_pred             CCCCCchhHHHHHHHHHHHHHHHhhhhhhhhhHHHhhhhhCCCcchhhHHHHHHHHHHHhhhhhhhhHhhHhcCchHHHH
Q 014481          105 PWKNIPQRYKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQT  184 (423)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~  184 (423)
                      ..|..++||.+++.+.+..+.+.+.+..+++........|| +...+-|...+|++.+....+++-|+.|++|-|..+++
T Consensus        36 ~~rVy~rRW~vLl~~slL~~SN~~qWI~ya~i~n~~~~~Yg-s~~~~~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~ll  114 (480)
T KOG2563|consen   36 GHRVYPRRWVVLLAFSLLNFSNGMQWIQYAPINNYVNSFYG-SSSAADWLSMIYMVVSVPFGFAAMWILDKFGLRTALLL  114 (480)
T ss_pred             ccccchhHhHHHHHHHHHHhcCcchheeehhHHHHHHHHhc-chHHHHHHHHHHHHHHHHHhhHHHHhhcccchHHHHHH
Confidence            45677889999988888888888888888888888888889 77788899999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhh-----hHHH--HHHHHHHHHHhhcccchHhHHHHHHhcCCCCchhhHHHHHHhhhhhHHHHHHh
Q 014481          185 GVLIWSLATALLPLLA-----GFMP--GLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLL  257 (423)
Q Consensus       185 ~~~~~~~~~~~~~~~~-----~~~~--~~~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~  257 (423)
                      +..+.+++..+-....     +.++  ....+..+.+.++.........+..-||++++|..+..+-..+..+|..+|.+
T Consensus       115 gt~ln~iGa~Ir~iss~p~v~~~f~~~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg~l  194 (480)
T KOG2563|consen  115 GTVLNGIGAWIRLISSLPFVPPLFRRPLTHTGQSIAAAAQPFILGLPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGFL  194 (480)
T ss_pred             HHHHHHHHHHHhhhccCccccccchhhhhHHhHHHHHHhhhHhhccccHHHHhhCCcchhhhhhhHHHhcchHHHHHHhh
Confidence            9999999987653222     3344  67788889999888888887889999999999999999999999999999988


Q ss_pred             hHHHhhhcc------CchH--HHHHHHHHHHHHHHHHHhhccCCcCcCCCCCcchhhhhhhhhhhhhHHhhccccCCCcH
Q 014481          258 LAPPIIENL------GWES--VFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPW  329 (423)
Q Consensus       258 ~~~~l~~~~------gw~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  329 (423)
                      +...+..+.      .|..  .|+..+.++.+.+++..+...++++...........               +..-....
T Consensus       195 lppilV~~~~~~~~~~~~~~~~f~~~~~l~~l~l~l~~~~~~~~P~tPps~s~~~~~---------------~~~f~~si  259 (480)
T KOG2563|consen  195 LPPILVPSSKDSEDNSWLFFTLFLGVECLAALLLALVLFVFTKKPPTPPSASQAALQ---------------DASFPKSI  259 (480)
T ss_pred             ccceecCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCchhHhhhh---------------cCcHHHHH
Confidence            888877543      3443  244344444333333333333222211111000000               00011235


Q ss_pred             HHhhhcHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhhCCChhhHHHHHHHHHHHHHHHHHHHHHHhHHhhhcCC
Q 014481          330 KAIFRSKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGV  404 (423)
Q Consensus       330 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~r~~  404 (423)
                      ++.++|+.+..+.+.+......+++..+.+..-+.. -|++...+|+......+++++++++.|.+.||.+.-+.
T Consensus       260 ~~~~~n~~F~il~~~ygi~~g~F~~l~~~l~~~l~~-sgY~~~~aG~ig~l~iv~Gmlga~~~gii~Dktk~fk~  333 (480)
T KOG2563|consen  260 KSCFKNRQFIILAICYGIGLGLFNSLSTLLNLALCP-SGYEGVFAGYIGALMIVAGMLGALASGIIADKTKKFKL  333 (480)
T ss_pred             HHHHcCccHHHHHHHHhhhHHHHHHHHHHhhhcccc-ccCCccccchhHHHHHHHHHHHHHHHHhhhhhhhhHHH
Confidence            789999999999988888888888888777766654 48888899999999999999999999999999865433

>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.77  E-value=4.5e-18  Score=164.77  Aligned_cols=289  Identities=16%  Similarity=0.174  Sum_probs=225.6

Q ss_pred             HHHHHHHHHHHHHHhhhhhhhhhHHHhhhhhCCCcchhhHHHHHHHHHHHhhhhhhhhHhhHhcCchHHHHHHHHHHHHH
Q 014481          114 KLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLAT  193 (423)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~  193 (423)
                      ..+.++.+..+...+....+...+..+.+.|+++.++.|++.+.+-++..+...+..+..-|.-|-+++-+|.++++++.
T Consensus        97 ~fl~~l~~~~~~q~l~~~y~~s~IttiErRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~lgs  176 (735)
T KOG3626|consen   97 MFLVLLSLAAFAQGLYVGYFNSVITTIERRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLMGLGS  176 (735)
T ss_pred             hHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCCCcceeEeeecccchhhhhHhHHHhccccCccceeeechhHHHHHH
Confidence            45566677777777777778888999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhh----------------------------------------------------HHHHHHHHHHHHHhhcccch
Q 014481          194 ALLPLLAG----------------------------------------------------FMPGLVLSRVLVGIGEGVSP  221 (423)
Q Consensus       194 ~~~~~~~~----------------------------------------------------~~~~~~~~~~l~G~~~~~~~  221 (423)
                      +++++- +                                                    .+..++++.++.|+|....+
T Consensus       177 ll~alP-Hf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~  255 (735)
T KOG3626|consen  177 LLFALP-HFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIF  255 (735)
T ss_pred             HHHhCh-HHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCc
Confidence            887432 1                                                    11256778899999999999


Q ss_pred             HhHHHHHHhcCCCCchhhHHHHHHhhhhhHHHHHHhhHHHhhhcc------------------C-chHHHHHHHHHHHHH
Q 014481          222 SAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENL------------------G-WESVFYIFGLLGIAW  282 (423)
Q Consensus       222 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~------------------g-w~~~~~~~~~~~~~~  282 (423)
                      +...+|+-|...+++-..++|++.....+|.++|-++++++.+.+                  | |..-|++.+.+.++.
T Consensus       256 tlGisYiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~~~  335 (735)
T KOG3626|consen  256 TLGISYIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALLLFS  335 (735)
T ss_pred             cCCCccccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999987421                  2 666778888888888


Q ss_pred             HHHHHhhccCCcCcCCCCCcchhhhhhhhhh-hhhHHhhcc--ccCCCcHHHhhhcHHHHHHHHHHHHHHHHHHHHHhhh
Q 014481          283 FSGFKILQEGETSNGATLAPRSNYINMKKSL-SASLEEMGE--SLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLSWL  359 (423)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  359 (423)
                      .+.++++|++.++..++...++......+.. ........+  ..-....+++++||.+...+++..+....+.++.+++
T Consensus       336 a~p~f~fPk~lp~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~ikdfp~s~~~ll~N~if~~~~l~~~~~~~~~~G~~tFl  415 (735)
T KOG3626|consen  336 AVPLFFFPKELPKSQKRKRARDLHVLKTESGGAKSDKTFGKKIKDFPKSIKRLLSNPIFMLVVLASVIESLAITGYITFL  415 (735)
T ss_pred             HHHHHhCcccCccccccchhhhhcccccccccccCCcchhhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhHHHhh
Confidence            8888888887765443211111000000000 000000000  0011235788999999999999999999999999999


Q ss_pred             hHHHHHhhCCChhhHHHHHHHHHH-HHHHHHHHHHHHhHHhhhcC
Q 014481          360 PTYFSEELSLNLTEAAWVSILPPL-ASVLVTSIAAQFADNLIATG  403 (423)
Q Consensus       360 ~~~~~~~~g~s~~~~~~~~~~~~~-~~~~~~~~~g~l~dr~~~r~  403 (423)
                      |-|++++||.++..+..++...++ +..+|.+++|++++|+.-+.
T Consensus       416 PKyLE~Qfg~sas~An~l~G~i~vp~~~~Gi~lGG~iikkfkl~~  460 (735)
T KOG3626|consen  416 PKYLETQFGISASLANILTGSIGVPAAAVGIFLGGLIIKKFKLSA  460 (735)
T ss_pred             HHHHHHHcCCCHHHHHHHhhhhhhhhhhhhhhccceeeeeecccH
Confidence            999999999999999988866554 55678889999999987553

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=99.76  E-value=7.4e-19  Score=159.03  Aligned_cols=294  Identities=20%  Similarity=0.246  Sum_probs=203.3

Q ss_pred             hHHHHHHHHHHHHHHHhhhhhhhhhHHHhhhhh-C-------CCcchhhHHHHHHHHHHHhhhhhhhhHhhHhcCchHHH
Q 014481          112 RYKLIGTTSLAFVICNMDKVNLSVAIIPMSHRF-G-------WNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQ  183 (423)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-------~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~  183 (423)
                      ..+.+.+..++++....+...++...+.+...+ |       .++...+.+..+..+|.++|++++|++.||+|||+++.
T Consensus        39 ~fk~i~iAG~GfftDsYDlF~I~lVt~il~~lY~~~~~~~g~~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~GRK~vYG  118 (538)
T KOG0252|consen   39 HFKAIIIAGMGFFTDSYDLFSISLVTKILGYLYYHGDESGGHYPSGVLALVNAAALVGTIFGQLFFGWLGDKFGRKKVYG  118 (538)
T ss_pred             HHHHHHHhhhhhcccchhhhhHHHHHHHHHHHhcCCCCCCCcCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhh
Confidence            445666777788888888888888877765443 2       44566788999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhh-------hHHHHHHHHHHHHHhhcccchHhHHHHHHhcCCCCchhhHHHHHHhhhhhHHHHHH
Q 014481          184 TGVLIWSLATALLPLLA-------GFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGL  256 (423)
Q Consensus       184 ~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~  256 (423)
                      ..++++.+++++++ ++       .-.+++.+.|++.|+|.|+-+|...+..+|....+.||...+.+....++|.+.|.
T Consensus       119 ~~liImIi~t~~~~-~s~~~~~~~~~m~~L~~~R~~LGiGIGGDYPlSAtI~SE~an~~~RGa~iaavFa~Qg~GilaG~  197 (538)
T KOG0252|consen  119 KELIIMIICSALSG-LSVGTTSPLGVMMTLCFFRFLLGIGIGGDYPLSATIMSESANKKTRGAFIAAVFAMQGFGILAGG  197 (538)
T ss_pred             HHHHHHHHHHHHhc-cCCCCCCCcchhhHHHHHHHHhhccccCCCcchHHHhhhhhhhccccceeEEEEEecchhHhhcc
Confidence            99999999987553 32       12467889999999999999999999999999999999999999888888888887


Q ss_pred             hhHHHhhhc---------------cCchHHHHHHHHHHHHHHHHHHhhccCCcCcCCCCCc-chhhhhhhhhhhhhHH--
Q 014481          257 LLAPPIIEN---------------LGWESVFYIFGLLGIAWFSGFKILQEGETSNGATLAP-RSNYINMKKSLSASLE--  318 (423)
Q Consensus       257 ~~~~~l~~~---------------~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~--  318 (423)
                      +++-.+...               .=||..+.+.++++++.+...+.+||++..+....++ +....+.++......+  
T Consensus       198 ivt~Iv~~~fe~~~~~~~~~~~ld~vWRl~~glg~vpa~~~ly~Rl~M~Et~~Y~al~~~~~~~a~~d~~k~~~~~~~~~  277 (538)
T KOG0252|consen  198 IVALIVSAIFEKIFNGPSTYPHLDGVWRIIFGLGAVPALLVLYFRLKMPETARYTALVSKKLKQAAGDMKKVLSVDIEAE  277 (538)
T ss_pred             HHHHHHHHHHhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhHHHHhhcCHhhhhhccccccccccchh
Confidence            776655421               1299999888888888888888888887665211111 0000001110000000  


Q ss_pred             ---hhccccCC--C-cHHHhhhc---HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhhCCChhhHHH--------HHHH-
Q 014481          319 ---EMGESLKD--V-PWKAIFRS---KAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAW--------VSIL-  380 (423)
Q Consensus       319 ---~~~~~~~~--~-~~~~~~~~---~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~--------~~~~-  380 (423)
                         +...+.+.  . .+...+..   +.+...+..+|+.-.+++....+...++.. .|+.+.+...        ...+ 
T Consensus       278 ~~~~~~~~~~~~~~~~F~~~f~~~hg~~Llgt~~~WFllDiafy~~nL~~s~I~~~-ig~~~~~~~~~~~~~vA~~~~ii  356 (538)
T KOG0252|consen  278 STAESDVPPPSNSFGLFSRLFLRWHGKHLLGTAGTWFLLDIAFYGQNLFQSVIFSA-IGVIPSANTYHELFKVAEGNLII  356 (538)
T ss_pred             hccccCCCCcccccchHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccHHHHHHHh-hccCCCcchHHHHHHHHHHHHHH
Confidence               00001111  1 12233322   445566788888888989888888888874 5766544333        2222 


Q ss_pred             HHHHHHHHHHHHHHHhHHhhhcCCccc
Q 014481          381 PPLASVLVTSIAAQFADNLIATGVETT  407 (423)
Q Consensus       381 ~~~~~~~~~~~~g~l~dr~~~r~~~~~  407 (423)
                      ..++.+.|..+...++|++||+.....
T Consensus       357 a~~~~vPGyw~tv~~id~iGRk~iq~~  383 (538)
T KOG0252|consen  357 AVCSTVPGYWFTVYFIDIIGRKYIQLM  383 (538)
T ss_pred             HHHccCCceeEEEEEeehhhhHHHHHh
Confidence            223334466677788999999855443

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=99.76  E-value=5.6e-20  Score=178.11  Aligned_cols=289  Identities=16%  Similarity=0.208  Sum_probs=3.0

Q ss_pred             HHHHHHHHHHHhhhhhhhhhHHHhhhhhCCCcchhhHHHHHHHHHHHhhhhhhhhHhhHhcCchHHHHHHHHHHHHHHHH
Q 014481          117 GTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALL  196 (423)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~  196 (423)
                      +.+++..+++.+........+..+.++|+++.++.|++.+.+-++..+..++..++.+|..|-+++-+|.++++++.+++
T Consensus         6 ~~~~~~~~~q~~~~g~~~~~lttiErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~l~   85 (539)
T PF03137_consen    6 VFLCLLGLFQMMVSGYVNSSLTTIERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSLLF   85 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHHHHH
Confidence            34455555556666777778889999999999999999999999999999999999999888889999999999988776


Q ss_pred             HHhhh--------------------------------------------------HHHHHHHHHHHHHhhcccchHhHHH
Q 014481          197 PLLAG--------------------------------------------------FMPGLVLSRVLVGIGEGVSPSAATD  226 (423)
Q Consensus       197 ~~~~~--------------------------------------------------~~~~~~~~~~l~G~~~~~~~~~~~~  226 (423)
                      +. ++                                                  .+..++++.++.|+|.+..++...+
T Consensus        86 ~l-Phf~~~~y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~t  164 (539)
T PF03137_consen   86 AL-PHFLSGPYSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGIT  164 (539)
T ss_dssp             -------------------------------------------------------------------SSS----------
T ss_pred             hc-cHhhcCCCccccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceee
Confidence            32 10                                                  1245788999999999999999999


Q ss_pred             HHHhcCCCCchhhHHHHHHhhhhhHHHHHHhhHHHhhhcc---------------------C-chHHHHHHHHHHHHHHH
Q 014481          227 LIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENL---------------------G-WESVFYIFGLLGIAWFS  284 (423)
Q Consensus       227 ~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~---------------------g-w~~~~~~~~~~~~~~~~  284 (423)
                      |+-|..++++-+.++|++.....+|.++|.++++.+.+.+                     | |..-|++.+++.++..+
T Consensus       165 YiDDnv~~~~splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~~l~ai  244 (539)
T PF03137_consen  165 YIDDNVSKKNSPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILLFLSAI  244 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             eeccccccccCccchhhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999998876421                     2 66667777777777777


Q ss_pred             HHHhhccCCcCcCCCCCc-chhhhhhhhhhhhhHHhh--------ccccCCCcHHHhhhcHHHHHHHHHHHHHHHHHHHH
Q 014481          285 GFKILQEGETSNGATLAP-RSNYINMKKSLSASLEEM--------GESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTC  355 (423)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  355 (423)
                      .++++|+.-+...+..+. +.+.....+.......+.        ..+.-....+++++||.+....++..+......++
T Consensus       245 pl~~FPk~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~~l~~Ll~Np~f~~~~la~~~~~~~~~G~  324 (539)
T PF03137_consen  245 PLFFFPKKLPGTSERQEEKESSERKEEDSDKDSFKDPKSKKSFGKSIKDFPKALKRLLTNPVFMCLILAGVFESFIVSGF  324 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHcCCccCCCcccccchhhhhhcchhhhhhhcccccccccchhhhhhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHH
Confidence            777888766554111111 000000000000000000        01112234678899999999999999999999999


Q ss_pred             HhhhhHHHHHhhCCChhhHHHHHHHHHH-HHHHHHHHHHHHhHHhhhcCCcc
Q 014481          356 LSWLPTYFSEELSLNLTEAAWVSILPPL-ASVLVTSIAAQFADNLIATGVET  406 (423)
Q Consensus       356 ~~~~~~~~~~~~g~s~~~~~~~~~~~~~-~~~~~~~~~g~l~dr~~~r~~~~  406 (423)
                      .++.|.|++.+++.++.+++++..+..+ ++++|.+++|++.+|++-+....
T Consensus       325 ~tF~pKylE~QF~~sas~A~~l~G~v~ip~~~~G~llGG~ivkk~kl~~~~~  376 (539)
T PF03137_consen  325 ATFLPKYLESQFGLSASQASLLTGIVSIPGAALGILLGGYIVKKFKLSARGA  376 (539)
T ss_dssp             ----------------------------------------------------
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHhhhhcchhheehheEEEEEEEecCcHHHH
Confidence            9999999999999999999988766554 77789999999999987654433

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=99.76  E-value=1e-16  Score=152.46  Aligned_cols=276  Identities=12%  Similarity=0.110  Sum_probs=182.6

Q ss_pred             HHHHHHHHHHHHHHHhhhhhhhhhHHHhhhhhCCCcchhhHHHHHHHHHHHhhhhhhhhHhh----HhcCchHHHHH-HH
Q 014481          113 YKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAK----IFGGRKVLQTG-VL  187 (423)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d----r~G~r~~~~~~-~~  187 (423)
                      |+++. ++...+...+.+....+.++.+.+++|.+....+++..+..+...+.+|+.|+++|    |+|||++++++ .+
T Consensus         4 ~~li~-~~~~~~Giq~~~~l~~~~l~~yl~~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~   82 (477)
T TIGR01301         4 RKLLR-VASVAAGVQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAA   82 (477)
T ss_pred             HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHH
Confidence            34443 33333344556677777777788899999999999999999999999999999999    59999999886 44


Q ss_pred             HHHHHHHHHHHhhhHH-----------------HHHHHHHHHHHhhcccchHhHHHHHHhcCCCCch--hhHHHHHHhhh
Q 014481          188 IWSLATALLPLLAGFM-----------------PGLVLSRVLVGIGEGVSPSAATDLIARSIPLEER--SRAVSFVFGGL  248 (423)
Q Consensus       188 ~~~~~~~~~~~~~~~~-----------------~~~~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r--~~~~~~~~~~~  248 (423)
                      ...++.++++ .+.+.                 +.++++..+..++.....++..++++|.+|+++|  +.+.++.+.+.
T Consensus        83 ~~~~~l~ll~-~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~  161 (477)
T TIGR01301        83 LVAFAVILIG-FAADIGHLFGDNLDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFM  161 (477)
T ss_pred             HHHHHHHHHH-hCchhhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHH
Confidence            4444444442 32221                 2233334445567777888889999999998765  68999999999


Q ss_pred             hhHHHHHHhhHHHh--hhcc-------------CchHHHHHHHHHHHHHHHH-HHhhccCCcCcCCCCCcchhhhhhhhh
Q 014481          249 SFGSVAGLLLAPPI--IENL-------------GWESVFYIFGLLGIAWFSG-FKILQEGETSNGATLAPRSNYINMKKS  312 (423)
Q Consensus       249 ~~g~~~g~~~~~~l--~~~~-------------gw~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  312 (423)
                      ++|.++|+.+++..  .+.+             +.++.|++.+++.++..+. .+..+|.++....+..+++ . +  + 
T Consensus       162 ~lG~ilg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~~~~~~~~~~~~-~-~--~-  236 (477)
T TIGR01301       162 AIGNVLGYAAGAYSGLYKIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKENPLIGSDDFINSE-A-A--P-  236 (477)
T ss_pred             HHHHHHHHHHHHHHhHHHhcccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeeccCCCccccchhhh-c-c--c-
Confidence            99999999999875  2211             5688899888877666444 4455565432211110000 0 0  0 


Q ss_pred             hhhhHHhhccccCCCcHHHhhh-----cHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH-hhCCChh------h----HHH
Q 014481          313 LSASLEEMGESLKDVPWKAIFR-----SKAVWAMIYAHFCGSWGHYTCLSWLPTYFSE-ELSLNLT------E----AAW  376 (423)
Q Consensus       313 ~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~g~s~~------~----~~~  376 (423)
                             ..+......++++++     -|.++.+++..++.+++.+.+..|.+.|+.+ .++.++.      +    ..+
T Consensus       237 -------~~~~~~~~~~~~i~~~~~~mP~~m~~l~~vqffsW~a~f~~~~y~T~~vg~~v~~~~~~~~~~y~~gvr~G~~  309 (477)
T TIGR01301       237 -------PSKHGEEAFFGELFGAFKYLPRPVWILLLVTCLNWIAWFPFILFDTDWMGREVYGGSVNQGAKYDDGVRAGAF  309 (477)
T ss_pred             -------ccccchhhhHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHcCCCCcchhHHHHHHHHHHH
Confidence                   000000112233333     2678999999999999999999999999874 4553321      1    123


Q ss_pred             HHHHHHHHHHHHHHHHHHHhHHhhhc
Q 014481          377 VSILPPLASVLVTSIAAQFADNLIAT  402 (423)
Q Consensus       377 ~~~~~~~~~~~~~~~~g~l~dr~~~r  402 (423)
                      ......+...+..++..++.+|+|+|
T Consensus       310 ~l~~~s~~~~i~s~~l~~l~~~~g~~  335 (477)
T TIGR01301       310 GLMLNSVVLGITSIGMEKLCRGWGAG  335 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            44455556566777778888888753

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>TIGR00788 fbt folate/biopterin transporter

Probab=99.73  E-value=1.3e-16  Score=153.98  Aligned_cols=283  Identities=13%  Similarity=0.064  Sum_probs=185.4

Q ss_pred             HHHHHHHHHHHHHHhhhhhhhhhHHHhhhhhCCCcchhhHHHHHHHHHHHhhhhhhhhHhhHhc-----CchHHHHHHHH
Q 014481          114 KLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFG-----GRKVLQTGVLI  188 (423)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G-----~r~~~~~~~~~  188 (423)
                      ..+.++...++..++.........+.+.+++|++.++++...++..+...+-.+ +|+++||++     ||+.++++.++
T Consensus        26 ~~~~~~~~~y~~qGl~~l~~~~~~~~l~~~lg~s~~~i~~~~sl~~lpw~~K~l-~g~l~D~~~i~G~rRr~~l~~~~~l  104 (468)
T TIGR00788        26 VVLAIGLQVLFVKGIAGLMRLPLSPMLTDDLGLDGARYQRLVGLSSLGWALKPF-AGVMSDTFPLFGYTKRWYLVLSGLL  104 (468)
T ss_pred             hHHHHHHHHHHHhhHHHHhhhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHhcCCCCccchHHHHHHHHH
Confidence            445556666777777733444455667778999999999999999999988555 999999997     67777777666


Q ss_pred             HH-HHHHHHHHhhhHHHHHHHHHHHHHhhcccchHhHHHHHHhcCCCCchhhH---HHHHHhhhhhHHHHHHhhHHHhhh
Q 014481          189 WS-LATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRA---VSFVFGGLSFGSVAGLLLAPPIIE  264 (423)
Q Consensus       189 ~~-~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~---~~~~~~~~~~g~~~g~~~~~~l~~  264 (423)
                      .+ +....++...++.....++.++.+++.+...++..+++.|..+ +++...   .++.....++|.++|+.++|.+.+
T Consensus       105 ~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~~~~~~~~s~~~~~~~~G~~vg~~l~G~l~~  183 (468)
T TIGR00788       105 GSAILYGLLPGKVSSAKVAAAFIFLAALAKALYDVLVDSLYSERIR-ESPSAGPSLVSWMWGASATGGLISSLLGGPLLD  183 (468)
T ss_pred             HHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCCCcCCCeeeHHHHHHHHHHHHHHHHHHHHHH
Confidence            52 3322222112333444457889999999999999999999998 554443   334444556899999999999999


Q ss_pred             ccCchHHHHHHHHHHHHHHHHHHhhccCCcCcCCCCCcchh--hhhhhhhhhhhHHhhccccCCCcHHHhhhcHHHHHHH
Q 014481          265 NLGWESVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSN--YINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMI  342 (423)
Q Consensus       265 ~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  342 (423)
                      ..+|+..|++.+++.++..+..++++|+++....+..+++.  .............+     .....++.+++|.++...
T Consensus       184 ~~~~~~~f~~~a~l~ll~~~~~~~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~l~~~l~~~~i~~~l  258 (468)
T TIGR00788       184 KTLTRILFLITAALLLLQLFVSNLSKERRAFVRPRIGTYLEMNMALLTLGVLANVKV-----QILGLRGAIQLLEIAKPL  258 (468)
T ss_pred             hcCcchHHHHHHHHHHHHHHHHHhcccccccccccccccchhhhhhhhhhHHHHHHH-----HHHHHHHHHhcHHHHHHH
Confidence            99999999999888877766666777653211111000000  00000000000000     001234567888888766


Q ss_pred             HHHHH-HHHHHHHHHhhhhHHHHHhhCCChhhHHHHHHHHHHHHHHHHHHHHHHhHHhhhcCC
Q 014481          343 YAHFC-GSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGV  404 (423)
Q Consensus       343 l~~~~-~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~r~~  404 (423)
                      +..++ +.........++ .+..+..|+++...|.+....+++.+++..+.+++.+|++.|+.
T Consensus       259 ~fifl~~~~~~~~~~~~f-~~~~~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~  320 (468)
T TIGR00788       259 IFIFLSYANLPGASGSVF-CATTQCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRLL  320 (468)
T ss_pred             HHHHHHHhhcCCCCceeE-EEEcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHHHH
Confidence            65555 322222211111 13334579999999999999999999999999999988887743

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>PRK09669 putative symporter YagG; Provisional

Probab=99.73  E-value=4.2e-16  Score=150.36  Aligned_cols=263  Identities=14%  Similarity=0.069  Sum_probs=171.4

Q ss_pred             HHHHHHHHHhhhhhhhhh-HHHhhhhhCCCcchhhHHHHHHHHHHHhhhhhhhhHhhH----hcCchH-HHHHHHHHHHH
Q 014481          119 TSLAFVICNMDKVNLSVA-IIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKI----FGGRKV-LQTGVLIWSLA  192 (423)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr----~G~r~~-~~~~~~~~~~~  192 (423)
                      ..++.+...........+ ...+.+.+|++...+|.+.++..+..++..|+.|+++||    +||||. ++++.+..++.
T Consensus        14 yg~g~~~~~~~~~~~~~~l~~~~t~~~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~   93 (444)
T PRK09669         14 YGLGDTACNLVWQTVMLFLAYFYTDVFGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVV   93 (444)
T ss_pred             hcchhhhhhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHH
Confidence            333433333333444444 445778899999999999999999999999999999999    777555 44566666666


Q ss_pred             HHHHHHhh-----hHHHHHHHHHHHHHhhcccchHhHHHHHHhcC-CCCchhhHHHHHHhhhhhHHHHHHhhHHHhhh--
Q 014481          193 TALLPLLA-----GFMPGLVLSRVLVGIGEGVSPSAATDLIARSI-PLEERSRAVSFVFGGLSFGSVAGLLLAPPIIE--  264 (423)
Q Consensus       193 ~~~~~~~~-----~~~~~~~~~~~l~G~~~~~~~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~--  264 (423)
                      .++.....     .....+++..++.+.+.+....+..++.+|+. ++++|.+..++...+..+|..+++.+...+..  
T Consensus        94 ~~l~f~~p~~~~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~~pl~~~~  173 (444)
T PRK09669         94 CLLTFYTPDFGATGKIIYACVTYILLSLVYTAINVPYCAMPGAITNDPRERHSLQSWRFALSFIGGLIVSVIALPLVDIL  173 (444)
T ss_pred             HHHHHhCCCCCcchHHHHHHHHHHHHHHHHHhhcchHHHhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            54442221     12345555666667666677777788999988 45789998888888888888877765544332  


Q ss_pred             -----ccCchHHHHHHHHHHHHHHHHHHh-hccCCcCcCCCCCcchhhhhhhhhhhhhHHhhccccCCCcHHHhhhcHHH
Q 014481          265 -----NLGWESVFYIFGLLGIAWFSGFKI-LQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAV  338 (423)
Q Consensus       265 -----~~gw~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  338 (423)
                           ..||+..+.+.+++.++..+..++ .+|...++ .+  ++   ...                ...++.+++||.+
T Consensus       174 ~~~~~~~g~~~~~~i~~ii~~v~~~~~~~~~~e~~~~~-~~--~~---~~~----------------~~~~~~~~~n~~~  231 (444)
T PRK09669        174 GKGDEQKGYFYAMMVMGLLGVVLFFCCFFMTKERYTPE-VD--NS---SSV----------------WKDLKLLLGNSQW  231 (444)
T ss_pred             CCCchhhhHHHHHHHHHHHHHHHHHHHhCCeEEecCCC-Cc--CC---CCH----------------HHHHHHHhCCchH
Confidence                 246888888877777665444333 33322111 00  00   000                0125678899999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhHHHHHhhCCChhhHHHHHHHHHHHHHHHHHHHHHHhHHhhhcCC
Q 014481          339 WAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGV  404 (423)
Q Consensus       339 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~r~~  404 (423)
                      +.+++..++............+.|.+...+ ++...+.+.....+..+++.++.+++.||+|+|+.
T Consensus       232 ~~l~~~~~~~~~~~~~~~~~~~y~~~~~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~  296 (444)
T PRK09669        232 RIMFIFNVVLLTAVVTRGGATLYYVNYVLL-RPDLATLFLVTGMIAGLFGALLSERLLGKFDRVRA  296 (444)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhheeeeeecC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHH
Confidence            888877776666665545544444443333 23334455556667888899999999999998754

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=99.73  E-value=1.8e-18  Score=146.71  Aligned_cols=273  Identities=13%  Similarity=0.116  Sum_probs=200.2

Q ss_pred             hhHHHHHHHHHHHHHHHhhhhhhhhhHHHhhhhhCCCcchhhHHHHHHHHHHHhhhhhhhhHhhH-hcCchHHHHHHHHH
Q 014481          111 QRYKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKI-FGGRKVLQTGVLIW  189 (423)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~G~r~~~~~~~~~~  189 (423)
                      +|...+..+++..+-.++..-..+.....+..+.+++.++..++.++|.....+...++|++.|| +|.|..-++-+...
T Consensus        41 hr~m~lv~mc~lgfgsyfcyd~p~alq~~fk~d~ni~~akftLlYsvYSwPNvVlcffgGflidr~fgir~gtii~~~fv  120 (459)
T KOG4686|consen   41 HRFMALVFMCLLGFGSYFCYDAPGALQIDFKLDSNIEYAKFTLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTIILCIFV  120 (459)
T ss_pred             hHHHHHHHHHHhcccceeecCCchhhhhhhhcccccceeeeeeeeeeccCCCEEEeeecceeehhhhhhhHHHHHHHHHH
Confidence            34455666666666677777777777778888999999999999999999999999999999997 67777666666666


Q ss_pred             HHHHHHHH--HhhhHHHHHHHHHHHHHhhcccchHhHHHHHHhcCCCCchhhHHHHHHhhhhhHHHHHHhhHHHhhhccC
Q 014481          190 SLATALLP--LLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLG  267 (423)
Q Consensus       190 ~~~~~~~~--~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g  267 (423)
                      .++.++++  ...+.+|.++++|++.|+|.-....+.+.++..||..|+.+.++|+......+|..+--.+.+++.+..+
T Consensus       121 ~~GqliFa~Ggi~~aFw~M~~GRF~FGIGgESlAVaQN~yav~wFKGKELn~vfGlqlSvAR~GstvNf~lm~~ly~~~~  200 (459)
T KOG4686|consen  121 FLGQLIFAAGGISHAFWTMLAGRFLFGIGGESLAVAQNKYAVYWFKGKELNFVFGLQLSVARLGSTVNFLLMPFLYDTMG  200 (459)
T ss_pred             HHHHHHHHhchHHHHHHHHHhhheeeccCchhhhhhhcceeEEEecCccccchhhHHHHHHHhhceeeeeecHHHHHHHH
Confidence            67766553  3567889999999999999888888899999999999999999999999999999998888888887532


Q ss_pred             c------hHHHH---HHHHH----HHHHHHHHHhhccCCcCcCCCCCcchhhhhhhhhhhhhHHhhccccCCCcHHHhh-
Q 014481          268 W------ESVFY---IFGLL----GIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIF-  333 (423)
Q Consensus       268 w------~~~~~---~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  333 (423)
                      -      +...-   ..+..    .++.++..-+..+..   ++....+       +.         ...+...+.++. 
T Consensus       201 ~~~~~~ghT~LG~~l~~~~~tc~~slical~lg~~D~rA---erilh~e-------~g---------~~Ge~pkLtdv~~  261 (459)
T KOG4686|consen  201 RMFPGVGHTLLGLWLCFEVKTCKQSLICALSLGLSDDRA---ERILHLE-------EG---------FLGEEPKLTDVNT  261 (459)
T ss_pred             HhcccchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHH---HHHHhhh-------cC---------cccCCcccccccc
Confidence            1      11110   01111    111111111111110   0000000       00         000000111111 


Q ss_pred             hcHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhhCCChhhHHHHHHHHHHHHHHHHHHHHHHhHHhhhc
Q 014481          334 RSKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIAT  402 (423)
Q Consensus       334 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~r  402 (423)
                      -.|.+|.+....+++..+.+-+.+.-|.++++++|+|+..++.+.+.....+.+..++.|.++||+|++
T Consensus       262 f~ppfw~~~iicv~yyva~fPFi~lg~~fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n  330 (459)
T KOG4686|consen  262 FYPPFWVLVIICVLYYVAWFPFITLGPMFFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKYGFN  330 (459)
T ss_pred             cCccHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhhcce
Confidence            237899999999999999999999999999999999999999999999999999999999999999987

>PRK10429 melibiose:sodium symporter; Provisional

Probab=99.72  E-value=7.3e-16  Score=149.64  Aligned_cols=267  Identities=12%  Similarity=0.061  Sum_probs=177.6

Q ss_pred             HHHHHHHHHhhhhhhhhhHHH-hhhhhCCCcchhhHHHHHHHHHHHhhhhhhhhHhh----HhcC-chHHHHHHHHHHHH
Q 014481          119 TSLAFVICNMDKVNLSVAIIP-MSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAK----IFGG-RKVLQTGVLIWSLA  192 (423)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d----r~G~-r~~~~~~~~~~~~~  192 (423)
                      ..++.+...+......++++. +.+.+|+++..+|.+..+..+..++..|+.|+++|    |+|| |+.++++.+..+++
T Consensus        11 yg~g~~~~~~~~~~~~~~l~~yyt~v~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g~i~~~i~   90 (473)
T PRK10429         11 YGFGAFGKDFAIGIVYMYLMYYYTDVVGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWILIGTLANSVV   90 (473)
T ss_pred             hccchhHHhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHhhhhHHHHHH
Confidence            444555555555666665554 56667999999999999999999999999999999    5699 45555677776666


Q ss_pred             HHHHHHhhh------HHHHHHHHHHHHHhhcccchHhHHHHHHhcC-CCCchhhHHHHHHhhhhhHHHHHHhhHHHhhh-
Q 014481          193 TALLPLLAG------FMPGLVLSRVLVGIGEGVSPSAATDLIARSI-PLEERSRAVSFVFGGLSFGSVAGLLLAPPIIE-  264 (423)
Q Consensus       193 ~~~~~~~~~------~~~~~~~~~~l~G~~~~~~~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~-  264 (423)
                      .+++ +..+      .+..+++..++.+++......+..++..|.. ++++|.+..++-..+.++|+.+++.+...+.+ 
T Consensus        91 ~~ll-f~~p~~~~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~~~~~~~~~  169 (473)
T PRK10429         91 LFLL-FSAHLFEGTAQYVFVCVTYILWGMTYTIMDIPFWSLVPTLTLDKREREQLVPYPRFFASLAGFVTAGFTLPFVNY  169 (473)
T ss_pred             HHHH-HcCCCCCccHHHHHHHHHHHHHHHHHHHHcchHHhhhHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5554 3221      1234555666777888888888889999998 57899999998777777776666655443322 


Q ss_pred             ------ccCchHHHHHHHHHHHHHHHHHHh-hccCCcCcCCCCCcchhhhhhhhhhhhhHHhhccccCCCcHHHhhhcHH
Q 014481          265 ------NLGWESVFYIFGLLGIAWFSGFKI-LQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKA  337 (423)
Q Consensus       265 ------~~gw~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  337 (423)
                            ..+|+...++.+++.++..+..++ .+|.+.....+.+++++ ...                ...++.+++||.
T Consensus       170 ~g~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~-~~~----------------~~~~~~~~~n~~  232 (473)
T PRK10429        170 VGGGDRGFGFQMFTLVLIAFFIVSTIITLRNVHEVYSSDNQVSAEGSH-LTL----------------KDIVALIYKNDQ  232 (473)
T ss_pred             hCCCchhhhHHHHHHHHHHHHHHHHHHHHcCceecCCccccccccccC-CCH----------------HHHHHHHhcCHH
Confidence                  125666666666665554433333 44432111100000000 000                012456678999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhHHHHHhhCCChhhHHHHHHHHHHHHHHHHHHHHHHhHHhhhcCC
Q 014481          338 VWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGV  404 (423)
Q Consensus       338 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~r~~  404 (423)
                      ++.+++..++..........+.+.|.+.. ..+....+.+.....++.+++.++.+++.||+|+|+.
T Consensus       233 ~~~ll~~~~~~~~~~~~~~~~~~y~~~y~-~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~  298 (473)
T PRK10429        233 LSCLLGMALAYNIASNIINGFAIYYFTYV-IGDADLFPYYLSYAGAANLVTLILFPRLVKSLSRRIL  298 (473)
T ss_pred             HHHHHHHHHHHHHHHHHHhhheeeEEEEE-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHH
Confidence            98888888887777777767766666543 3345566667777778899999999999999998854

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=99.72  E-value=3.5e-15  Score=140.21  Aligned_cols=263  Identities=14%  Similarity=0.105  Sum_probs=191.7

Q ss_pred             HHHHHHHHHhhhhhhhhhHHHhhhhhCCCcchhhHHHHHHHHHHHhhhhhhhhHhhHhc-CchHHHHHHHHHHHHHHHHH
Q 014481          119 TSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFG-GRKVLQTGVLIWSLATALLP  197 (423)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G-~r~~~~~~~~~~~~~~~~~~  197 (423)
                      +...+++.+.....+.|.++.+.++.|+|..++|.+.+...+...++++++|.++||++ +|+.+.+..++.++..... 
T Consensus         7 Ls~~~f~~f~~~G~~~p~~~~~L~~~G~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~~-   85 (400)
T PF03825_consen    7 LSLMYFLYFFAYGAFLPYLPLYLESRGFSGTQIGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALALLLL-   85 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHH-
Confidence            44455666677777888899999999999999999999999999999999999999986 4666666666655554444 


Q ss_pred             HhhhHHHHHHHHHHHHHhhcccchHhHHHHHHhcCCCCchhhHHHHHHhhhhhHHHHHHhh-HHHhhhccC---chHHHH
Q 014481          198 LLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLL-APPIIENLG---WESVFY  273 (423)
Q Consensus       198 ~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~-~~~l~~~~g---w~~~~~  273 (423)
                      ...++++.+++..++..+......|...++..+...  +++.-+|-.....++|.+++... ++.+....+   ..+.++
T Consensus        86 ~~~~~f~~~~~~~~l~~~~~~p~~pl~dsi~~~~~~--~~~~~YG~iRlwGSiGf~~~~~~~~~~~~~~~~~~~~~~~~~  163 (400)
T PF03825_consen   86 AFSSSFWWLFVIMLLFSFFFSPTMPLSDSIALSYLG--DRGKDYGRIRLWGSIGFIVAALAFGGLLGGYLGISGTSLIFY  163 (400)
T ss_pred             HHhccHHHHHHHHHHHHHHHccHHHHHHHHHHHHcc--cccCCCCcchhhhhHHHHHHHHHHHHHHHhhhccccccHHHH
Confidence            455667777778888888888888888888888875  45566777777777887777554 233333222   334566


Q ss_pred             HHHHHHHHHHHHHHhhccCCcCcCCCCCcchhhhhhhhhhhhhHHhhccccCCCcHHHhhhcHHHHHHHHHHHHHHHHHH
Q 014481          274 IFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHY  353 (423)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  353 (423)
                      +.++..++.....+.+|+.++++..+...++                   ....+..+++|+|+++.+.+..++......
T Consensus       164 i~~~~~~ll~~~~l~lp~~~~~~~~~~~~~~-------------------~~~~~~~~llk~~~~~~Fll~~~l~~~~~~  224 (400)
T PF03825_consen  164 IAAILSLLLAGFALFLPKTPPKRSAKESVKK-------------------LLGLDALKLLKNPRFLVFLLAAFLIGISHA  224 (400)
T ss_pred             HHHHHHHHHHHHHHhCCCCccccccCCCccc-------------------ccchHHHHHhcCccHHHHHHHHHHHHHHHH
Confidence            6666555555555566665522211111000                   000112478999999999999999999999


Q ss_pred             HHHhhhhHHHHHhhCCChhhHHHHHHHHHHHHHHHHHHHHHHhHHhhhcC
Q 014481          354 TCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATG  403 (423)
Q Consensus       354 ~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~r~  403 (423)
                      ...++.+.|+++.-|.+....+.+.++..++.++.-.+.+++..|+|.++
T Consensus       225 ~~~~f~~~yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~  274 (400)
T PF03825_consen  225 AYYTFFSIYLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIKW  274 (400)
T ss_pred             HHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH
Confidence            99999999999853377788888888888999999999999999998773

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=99.71  E-value=2.3e-15  Score=138.92  Aligned_cols=273  Identities=13%  Similarity=0.050  Sum_probs=178.0

Q ss_pred             HHHHHHHHHHHHHHhhhhhhhhhHHHhhh-hhCCCcchhhHHHHHHHHHHHhhhhhhhhHhhHhcCchHHHHHHHHHHH-
Q 014481          114 KLIGTTSLAFVICNMDKVNLSVAIIPMSH-RFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSL-  191 (423)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~-  191 (423)
                      +....+...++..++..+...++.+...+ ..|++.+++|.+.++..+...+.+|+.|.++||+|.||-+++...+..+ 
T Consensus         7 ~~~~~~s~~~f~~Ff~~gi~~pF~~iWL~~~~GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dklg~kK~Ll~~i~~l~~l   86 (412)
T PF01306_consen    7 KNYWWLSLFYFFYFFIWGIFLPFFPIWLTQVAGLSGTEIGIIFSAGSLFALLAQPVYGFISDKLGLKKHLLWFIAILLLL   86 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHTHHHHHHHHHHCTTCSHHHHHHHHHHHT
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCHHHHHHHHHHHHHHHHHHHHhHHHhcchhhhhHHHHHHHHHHHHH
Confidence            44555666666677778888888888554 5899999999999999999999999999999999988876654433222 


Q ss_pred             -HH-HHH---HHhhhHHH-HHHHHHHHHHhhcccchHhHHHHHHhcCCCCchhhHHHHHHhhhhhHHHHHHhhHHHhhhc
Q 014481          192 -AT-ALL---PLLAGFMP-GLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIEN  265 (423)
Q Consensus       192 -~~-~~~---~~~~~~~~-~~~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~  265 (423)
                       +- ++.   .....|.+ ..+++-+..|+......|+.-+++.++.  ++.+.-+|-...++++|.+++..++|.+.+.
T Consensus        87 ~~pff~~v~~pll~~n~~lg~iig~i~l~~~f~~~~~~~Ea~~er~s--r~~~feYG~~R~wGSig~ai~s~~~G~L~~i  164 (412)
T PF01306_consen   87 FGPFFIYVFGPLLQSNFWLGAIIGGIYLGLVFNAGVPLSEAYAERVS--RRNGFEYGRARMWGSIGFAIASLLAGILFNI  164 (412)
T ss_dssp             CHHHHHHTHHHHHHTT-HHHHHHTTTTTTTTTTTHHHHHHHHHHHHH--HHHSS-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHH--HHhcCCcchHHHHhhHHHHHHHHHhheeeee
Confidence             11 111   11122322 2233334445555566666666666654  4566677888899999999999999999874


Q ss_pred             cCchHHHHHHHHHHHHHHHHHHhhccCCcCcCCCCCcchhhhhhhhhhhhhHHhhccccCCCcHHHhhhcHHHHHHHHHH
Q 014481          266 LGWESVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAH  345 (423)
Q Consensus       266 ~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  345 (423)
                       +-...||+....+++..++.+..+++.+++....+..+.+.   +           +.+.....+++|+|++|.+.+..
T Consensus       165 -~p~~~fwi~s~~~~il~lll~~~~~~~~~~~~~~~~~~~~~---~-----------~~~~~~~~~l~k~~~fw~~~l~v  229 (412)
T PF01306_consen  165 -NPNIIFWIASAAAIILLLLLLLLKPDVPPQAEVADALGAKK---D-----------KVSLKDVLSLFKMRNFWFFVLFV  229 (412)
T ss_dssp             -HHHHHHHHHHHHHHHHHHHHHSS---SSSSS-SSTTSSS--------------------HHHHHHHTTSHHHHHHHHHH
T ss_pred             -CccHHHHHHHHHHHHHHHHHHHcCCcCchhhhhhcccccCC---C-----------CCcHHHHHHHhcchhHHHHHHHH
Confidence             55778887766666555444444332222111111100000   0           00001246889999999998887


Q ss_pred             HHHHHHHHHHHhhhhHHHHHhh---CCChhhHHHHHHHHHHHHHHHHHHHHHHhHHhhhcC
Q 014481          346 FCGSWGHYTCLSWLPTYFSEEL---SLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATG  403 (423)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~~~~---g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~r~  403 (423)
                      ......+..+...++.|....+   +.+....|++.+..-+..++.-.+..++.+|+|.|+
T Consensus       230 ~g~~~~Y~vfdqqf~~y~~~~f~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~  290 (412)
T PF01306_consen  230 IGVAAIYDVFDQQFPIYFASFFQSAGQGNQMYGYLWSVQVFLEALMMFFSPWLINRIGAKN  290 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcccccChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChHh
Confidence            7777777777777888877532   234456788888889999999999999999999884

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>PF13347 MFS_2: MFS/sugar transport protein

Probab=99.71  E-value=4.1e-16  Score=149.63  Aligned_cols=256  Identities=18%  Similarity=0.205  Sum_probs=189.8

Q ss_pred             hhhhhhhhh-HHHhhhhhCCCcchhhHHHHHHHHHHHhhhhhhhhHhh----HhcCchHHH-HHHHHHHHHHHHHHHhhh
Q 014481          128 MDKVNLSVA-IIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAK----IFGGRKVLQ-TGVLIWSLATALLPLLAG  201 (423)
Q Consensus       128 ~~~~~~~~~-~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d----r~G~r~~~~-~~~~~~~~~~~~~~~~~~  201 (423)
                      +........ .+.+.+.+|+++..+|++..+..+..++..|+.|.++|    |+||||.++ ++.+..+++..++....+
T Consensus        15 ~~~~~~~~~~~~f~~~~~gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf~~~p   94 (428)
T PF13347_consen   15 MIWSLLSSYLLYFYTDVLGLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLFSPPP   94 (428)
T ss_pred             HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccccccceEeehhhHHHHHHHHHhhcccc
Confidence            333333333 45577778999999999999999999999999999999    899877665 566777776666532212


Q ss_pred             -------HHHHHHHHHHHHHhhcccchHhHHHHHHhcCC-CCchhhHHHHHHhhhhhHHHHHHhhHHHhhhcc-------
Q 014481          202 -------FMPGLVLSRVLVGIGEGVSPSAATDLIARSIP-LEERSRAVSFVFGGLSFGSVAGLLLAPPIIENL-------  266 (423)
Q Consensus       202 -------~~~~~~~~~~l~G~~~~~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~-------  266 (423)
                             ....+.+..++..++......+..++.+|..+ +++|.+..++-..+..+|.++...+.+.+.+..       
T Consensus        95 ~~~~~~~~~~~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~  174 (428)
T PF13347_consen   95 AGLSFTAKLVWLFVFYILFDIAYTFVQIPYNALIPELTPDPDERTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDTSN  174 (428)
T ss_pred             chhhhhhHHHHHHHHHHHHHHhhhhccCchhhcCccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCccch
Confidence                   12235666777789989999999999999997 568999999988888888876666666655322       


Q ss_pred             CchHHHHHHHHHHHHHHHHHHh-hccCCcCcCCCCCcchhhhhhhhhhhhhHHhhccccCCCcHHHhhhcHHHHHHHHHH
Q 014481          267 GWESVFYIFGLLGIAWFSGFKI-LQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAH  345 (423)
Q Consensus       267 gw~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  345 (423)
                      +|++..++.+++.++..+...+ .+|+++....+ ++                   +..-...++.+++||.++.+.+..
T Consensus       175 ~~~~~~~v~~iv~~v~~~i~~~~~ke~~~~~~~~-~~-------------------~~~~~~~~~~~~~nr~~~~l~~~~  234 (428)
T PF13347_consen  175 GYRWMALVLAIVGLVFFLITFFFVKERSVEVTEQ-EK-------------------KISLRDSLRSLFRNRPFRILLLAF  234 (428)
T ss_pred             HHHHHHHHHHHHHHHHhhhhhheeeecccccccc-cc-------------------ccccccchhhhcccchHHHHHHHH
Confidence            5888888888888776555444 44411111110 00                   001112367889999999999999


Q ss_pred             HHHHHHHHHHHhhhhHHHHHhhCCChhhHHHHHHHHHHHHHHHHHHHHHHhHHhhhcCC
Q 014481          346 FCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGV  404 (423)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~r~~  404 (423)
                      ++...+........+.|.+...|.+ ...+.+.....++++++.++.++++||+|+|+.
T Consensus       235 ~~~~~~~~~~~~~~~y~~~~vl~~~-~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~  292 (428)
T PF13347_consen  235 FLQWLAFALMNTFLPYYFTYVLGNE-GLISIFMLIFFVASIVGSPLWGRLSKRFGKKKV  292 (428)
T ss_pred             HHHHhhhhhhhhHHHHHHHHHhcCc-hhhHHHHHHHHHHHHHHHHHHHHHHHHccceee
Confidence            9988888888888888988877777 556777788899999999999999999998864

>TIGR01272 gluP glucose/galactose transporter

Probab=99.68  E-value=2.7e-15  Score=136.91  Aligned_cols=187  Identities=12%  Similarity=0.082  Sum_probs=148.5

Q ss_pred             hhhHHHHHHHHHHHHHhhcccchHhHHHHHHhcCCCCchhhHHHHHHhhhhhHHHHHHhhHHHhhhc-------------
Q 014481          199 LAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIEN-------------  265 (423)
Q Consensus       199 ~~~~~~~~~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~-------------  265 (423)
                      ..++++.+++..++.|.|.+...+..+.++++..+++++++.+++.+.++++|.++||.+++.+...             
T Consensus         6 ~~~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~~~~~   85 (310)
T TIGR01272         6 SQRYYVLFLGALFVLASGLTILQVAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQVATAN   85 (310)
T ss_pred             HhhHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhhhhhh
Confidence            4567899999999999999999999999999999999999999999999999999999999988732             


Q ss_pred             ---cCchHHHHHHHHHHHHHHHHHHhhccCCcCcCCCCCcchhhhhhhhhhhhhHHhhccccCCCcHHHhhhcHHHHHHH
Q 014481          266 ---LGWESVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMI  342 (423)
Q Consensus       266 ---~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  342 (423)
                         ..|+++|++.+.+.++..+.+.+.+.++.+++..  ++...              ++.   ...+..+++|.++...
T Consensus        86 ~~~~~~~~~yl~ia~~~~~~~i~~~~~~~p~~~~~~~--~~~~~--------------~~~---~~~~~~~~~~~~~l~~  146 (310)
T TIGR01272        86 AEAAKVHTPYLLLAGALAVLAIIFAFLPLPELQEADV--ARVSS--------------GDT---TQKTSAFQFTHLVLGA  146 (310)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCcccc--ccccc--------------ccc---cchhhHHhhHHHHHHH
Confidence               3699999987777666555554543322111110  00000              000   0113567888999888


Q ss_pred             HHHHHHHHHHHHHHhhhhHHHHHh--hCCChhhHHHHHHHHHHHHHHHHHHHHHHhHHhhhcCC
Q 014481          343 YAHFCGSWGHYTCLSWLPTYFSEE--LSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGV  404 (423)
Q Consensus       343 l~~~~~~~~~~~~~~~~~~~~~~~--~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~r~~  404 (423)
                      +..+++...+.++..|++.|+.+.  +|+++.+++...+....+.++|+++.+++.||+++|+.
T Consensus       147 ~~~f~yvg~e~~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~  210 (310)
T TIGR01272       147 LGIFVYVGAEVSAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRY  210 (310)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHH
Confidence            888888889999999999999854  69999999999999999999999999999999997754

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>PRK09848 glucuronide transporter; Provisional

Probab=99.65  E-value=1.6e-14  Score=139.55  Aligned_cols=264  Identities=11%  Similarity=0.054  Sum_probs=164.4

Q ss_pred             HHHHHHHHHHhhhhhhhhhH-HHhhhhhCCCcchhhHHHHHHHHHHHhhhhhhhhHhhHh----cCchHH-HHHHHHHHH
Q 014481          118 TTSLAFVICNMDKVNLSVAI-IPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIF----GGRKVL-QTGVLIWSL  191 (423)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~----G~r~~~-~~~~~~~~~  191 (423)
                      ...++.+...+......+++ +.+.+.+|++..++|.+.++..+..++..+++|+++||.    |||+.+ .++.+...+
T Consensus        12 ~yg~g~~~~~~~~~~~~~~l~~y~~~~~gl~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~~~   91 (448)
T PRK09848         12 GYSLGDVANNFAFAMGALFLLSYYTDVAGVGAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLMI   91 (448)
T ss_pred             hhccchHHhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHHHHH
Confidence            34445545555555554443 456777899999999999999999999999999999996    777755 455444444


Q ss_pred             HHHHHHHhh----h--HHHHHHHHHHHHHhhcccchHhHHHHHHhcCC-CCchhhHHHHHHhh-----hhhHHHHHHhhH
Q 014481          192 ATALLPLLA----G--FMPGLVLSRVLVGIGEGVSPSAATDLIARSIP-LEERSRAVSFVFGG-----LSFGSVAGLLLA  259 (423)
Q Consensus       192 ~~~~~~~~~----~--~~~~~~~~~~l~G~~~~~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~-----~~~g~~~g~~~~  259 (423)
                      ..++.....    .  ....+++..++.+++.+...++..++..+... +++|.+..++-..+     ..++..++|.++
T Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~~p~i~  171 (448)
T PRK09848         92 FSVLVFWVPTDWSHSSKVVYAYLTYMGLGLCYSLVNIPYGSLATAMTQQPQSRARLGAARGIAASLTFVCLAFLIGPSIK  171 (448)
T ss_pred             HHHHHHhCcCCCCcchHHHHHHHHHHHHHHHHHHhcccHhhhhhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333321111    1  12233445566777777777777777777664 46788876665443     335555666665


Q ss_pred             HHhhhcc--CchHHHHHHHHHHHHHHH-HHHhhccCCcCcCCCCCcchhhhhhhhhhhhhHHhhccccCCCcHHHhhhcH
Q 014481          260 PPIIENL--GWESVFYIFGLLGIAWFS-GFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSK  336 (423)
Q Consensus       260 ~~l~~~~--gw~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  336 (423)
                      +......  +|.....+.+++.++..+ .....+|+.+.+.+    +.   .                ....++.+++||
T Consensus       172 ~~~g~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~e~~~~~~~----~~---~----------------~~~~~~~l~~n~  228 (448)
T PRK09848        172 NSSPEEMVSVYHFWTIVLAIAGMVLYFICFKSTRENVVRIVA----QP---S----------------LKISLQTLKRNR  228 (448)
T ss_pred             HhCCCchhhhHHHHHHHHHHHHHHHHHHHHcCcEeccCCCcc----CC---C----------------HHHHHHHHhCCc
Confidence            5432111  121111222222222221 11222332111100    00   0                001256789999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhHHHHHhhCCChhhHHHHHHHHHHHHHHHHHHHHHHhHHhhhcCC
Q 014481          337 AVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGV  404 (423)
Q Consensus       337 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~r~~  404 (423)
                      .++...+..++...+........|.|+++.+|.++...++......++.+++.++.+++.||+++|+.
T Consensus       229 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~  296 (448)
T PRK09848        229 PLFMLCIGALCVLISTFAVSASSLFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKNT  296 (448)
T ss_pred             hHHHHHHHHHHHHHHHHHHhhhheeeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHH
Confidence            99999888888888888888888888888888877666665555567788899999999999997744

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=99.65  E-value=1.3e-13  Score=129.01  Aligned_cols=253  Identities=18%  Similarity=0.176  Sum_probs=173.4

Q ss_pred             hHHHHHHHHHHHHHHHhhhhhhhhhHHHhhhh--hCCCcchhhHHHHHHHHHHHhhhhhhhhHhhHhcC-chHHHHHHHH
Q 014481          112 RYKLIGTTSLAFVICNMDKVNLSVAIIPMSHR--FGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGG-RKVLQTGVLI  188 (423)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~-r~~~~~~~~~  188 (423)
                      +|+.+.+..+..++.....+++.+..-++.++  .+.+.+..|++.++..++.+++++++|++..|.+. |+.++.+.++
T Consensus        32 ~wrsi~l~~~~sfl~~v~~sI~~~s~wpYl~~lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~~~~k~Pli~s~ii  111 (488)
T KOG2325|consen   32 NWRSIYLALLNSFLVAVQFSIYLTSMWPYLQKLDPTATATFFGLVIAASSLGHAIFSLIFGIWSNKTGSVKKPLIVSFLI  111 (488)
T ss_pred             chHhHHHHHHHHHHHhhhheEEEeecchhhhhcCCCCCcchhhHHHHHHHHHHHhcchhhcccccccCCcccCHHHHHHH
Confidence            46778888888888888887777764444444  77888899999999999999999999999999997 8999999999


Q ss_pred             HHHHHHHHHHh---hh-HHHHHHHHHHHHHhhcccchHhHHHHHHhcCCCCchhhHHHHHHhhhhhHHHHHHhhHHHhhh
Q 014481          189 WSLATALLPLL---AG-FMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIE  264 (423)
Q Consensus       189 ~~~~~~~~~~~---~~-~~~~~~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~  264 (423)
                      ..++.++....   ++ .-+.++++|++.|+|.+.. ...-+|+++....++|.++++....+..+|.++||.+...+..
T Consensus       112 ~~~g~llY~~l~~~~~~~~y~mL~~R~l~Gvg~~n~-a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f~~  190 (488)
T KOG2325|consen  112 AIIGNLLYLALAYVPNGVKYLMLVARILTGVGVGNF-AVLRAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQLAFTP  190 (488)
T ss_pred             HHHHHHHHHHHHhcccchHHHHHHHHHHcCcCcccH-HHHHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHHHhh
Confidence            99998877333   23 5678999999999997655 6678899998888999999999999888898888888776653


Q ss_pred             c--cC-----------chHHHHHHHHHHHHHHHHHHhhccCCcCcCCCCCcchhhhhhhhhhhhhHHhhccccCCCcHHH
Q 014481          265 N--LG-----------WESVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKA  331 (423)
Q Consensus       265 ~--~g-----------w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  331 (423)
                      -  -|           +..+-|+.+++.++.++..++..++......+.+.+..+     +  ...+.++....+.++  
T Consensus       191 Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f~E~~~~~~~~~~~~~~-----~--~~~~~~~~~~~~~d~--  261 (488)
T KOG2325|consen  191 LGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILFFFKEVYRGIIDKKKRSVE-----E--EKSDIEKVKKPKLDW--  261 (488)
T ss_pred             hcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHHhheeecccCccccccccch-----h--hccchhhhccCChhH--
Confidence            1  11           335667777777776555544444333322221111110     0  000000011111111  


Q ss_pred             hhhcHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhhCCChhhHHHHH
Q 014481          332 IFRSKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVS  378 (423)
Q Consensus       332 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~  378 (423)
                          ...+...+..+...+......+..+......++++..++....
T Consensus       262 ----~~~~vc~~~~~~~~~~~~~iet~~~~~~m~~y~w~~~~av~~~  304 (488)
T KOG2325|consen  262 ----VAVLVCIFLRFVVNFIATTIETLSSALTMVMYGWTGSEAVLYN  304 (488)
T ss_pred             ----HHHHHHHHHHHHHHHHHHHHHhccchHHHHHhccccchHHHhh
Confidence                2334445555666666666677777777777888877765443

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.64  E-value=2.3e-14  Score=139.97  Aligned_cols=172  Identities=12%  Similarity=0.082  Sum_probs=128.3

Q ss_pred             HHhhhhhhhhhHHHhh-hhhCCCcchhhHHHHHHHHHHHhhhhhhhhHhhHhcCchHHHHHHHHHHHHHHH-HH-HhhhH
Q 014481          126 CNMDKVNLSVAIIPMS-HRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATAL-LP-LLAGF  202 (423)
Q Consensus       126 ~~~~~~~~~~~~~~~~-~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~-~~-~~~~~  202 (423)
                      .....+.....+|.+. +.+|.+..+.++..+...++..++.++.|+++||+|||+.++++.++..++... +. ..+++
T Consensus       262 ~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~  341 (490)
T PRK10642        262 TNVTYYMLLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFILINSNV  341 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            3344445555667654 567988888888888889999999999999999999999988877654433322 21 12344


Q ss_pred             HHHHHHHHHHHHhhcccchHhHHHHHHhcCCCCchhhHHHHHHhhhhhHHHHHHhhHHHhhhcc-CchHHHHHHHHHHHH
Q 014481          203 MPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENL-GWESVFYIFGLLGIA  281 (423)
Q Consensus       203 ~~~~~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~-gw~~~~~~~~~~~~~  281 (423)
                      ...+++++++.|++.+........++.+.+|++.|++++|+.+....+++.++|.+.+++.+.. +|+.++++..+.+++
T Consensus       342 ~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~~~~~~~~~~~~~~~~~i  421 (490)
T PRK10642        342 IGLIFAGLLMLAVILNCFTGVMASTLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAAWLVESTQNLMMPAYYLMVVAVI  421 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence            5667788888888777666777888899999999999999855556677788999999988764 477777777777777


Q ss_pred             HHHHHHhhccCCcCcC
Q 014481          282 WFSGFKILQEGETSNG  297 (423)
Q Consensus       282 ~~~~~~~~~~~~~~~~  297 (423)
                      .++..+++||+++...
T Consensus       422 ~~~~~~~~pes~~~~~  437 (490)
T PRK10642        422 GLITGVTMKETANRPL  437 (490)
T ss_pred             HHHHHHHhccccCCCC
Confidence            6666777788766543

>PRK11462 putative transporter; Provisional

Probab=99.64  E-value=9.7e-14  Score=133.97  Aligned_cols=263  Identities=12%  Similarity=0.042  Sum_probs=175.5

Q ss_pred             HHHHHHHHHHhhhhhhhhhHH-HhhhhhCCCcchhhHHHHHHHHHHHhhhhhhhhHhhH----hcCchHHH-HHHHHHHH
Q 014481          118 TTSLAFVICNMDKVNLSVAII-PMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKI----FGGRKVLQ-TGVLIWSL  191 (423)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr----~G~r~~~~-~~~~~~~~  191 (423)
                      ...++.+...........++. .+.+.+|+++..+|.+..+.-+.-++..|+.|.++||    +||||..+ ++.+..++
T Consensus        13 ~Yg~g~~~~~~~~~~~~~~l~~fyt~~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i   92 (460)
T PRK11462         13 GYGMGDAASHIIFDNVMLYMMFFYTDIFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGI   92 (460)
T ss_pred             hhccchhhhhHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHH
Confidence            334444444444455554444 4667789999999999999999999999999999996    68876655 46566666


Q ss_pred             HHHHHHHhhhH------HHHHHHHHHHHHhhcccchHhHHHHHHhcCC-CCchhhHHHHHHhhhhhHHHHHHhhHHHhhh
Q 014481          192 ATALLPLLAGF------MPGLVLSRVLVGIGEGVSPSAATDLIARSIP-LEERSRAVSFVFGGLSFGSVAGLLLAPPIIE  264 (423)
Q Consensus       192 ~~~~~~~~~~~------~~~~~~~~~l~G~~~~~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~  264 (423)
                      +..++ +..+.      ...+.+..++..++......+..++.++..+ +++|.+..++...+..+|..+++.+...+..
T Consensus        93 ~~~ll-f~~p~~s~~~~~~y~~~~~~~~~~~~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~  171 (460)
T PRK11462         93 VCVLA-YSTPDLSMNGKMIYAAITYTLLTLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPLVN  171 (460)
T ss_pred             HHHHH-HhCCCCCcchHHHHHHHHHHHHHHHHHHHhccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            66554 32221      2345556667788888888888899999886 6889999999999999998888777655544


Q ss_pred             c-------cCchHHHHHHHHHHHHHHHHHHhhccCCcCcCCCCCcchhhhhhhhhhhhhHHhhccccCCCcHHHhhhcHH
Q 014481          265 N-------LGWESVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKA  337 (423)
Q Consensus       265 ~-------~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  337 (423)
                      .       .||+....+.+++.+++.++.+...+++.+.+.   ++..   ..                ..++..++||.
T Consensus       172 ~~g~~~~~~g~~~~~~i~~ii~~i~~~i~~~~~kE~~~~~~---~~~~---~~----------------~~l~~~~~Nk~  229 (460)
T PRK11462        172 LIGGDNKPLGFQGGIAVLSVVAFMMLAFCFFTTKERVEAPP---TTTS---MR----------------EDLRDIWQNDQ  229 (460)
T ss_pred             HhCCCchhhhHHHHHHHHHHHHHHHHHHHHhcceeccCCCc---cCCC---HH----------------HHHHHHhCChH
Confidence            3       257777777777665554443332222211110   0000   00                02467788988


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhHHHHHhhCCChhhHHHHHHHHHHHHHHHHHHHHHHhHHhhhcCC
Q 014481          338 VWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGV  404 (423)
Q Consensus       338 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~r~~  404 (423)
                      ++.++...++..............|.+...|. +...+.+.....++++++.++++++.||+++|+.
T Consensus       230 ~~~l~~~~~~~~~~~~~~~~~~~y~~~y~~g~-~~~~~~~l~~~~i~~iig~~l~~~l~~r~gkk~~  295 (460)
T PRK11462        230 WRIVGLLTIFNILAVCVRGGAMMYYVTWILGT-PEVFVAFLTTYCVGNLIGSALAKPLTDWKCKVTI  295 (460)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHhhhhhhhhcCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHH
Confidence            88776666666655555544445455443443 3344556777888899999999999999988743

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=99.64  E-value=8.3e-14  Score=128.90  Aligned_cols=177  Identities=18%  Similarity=0.288  Sum_probs=143.9

Q ss_pred             HHHHHHHHHHHHhhhhhhhhh-HHHhhhhhC----CCcchhhHHHHHHHHHHHhhhhhhhhHhhHh-cCchHHHHHHHHH
Q 014481          116 IGTTSLAFVICNMDKVNLSVA-IIPMSHRFG----WNSSVAGLVQSSFFWGYALSQLPGGWLAKIF-GGRKVLQTGVLIW  189 (423)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~----~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-G~r~~~~~~~~~~  189 (423)
                      +..++..-+-.-+..+.+... .-++..+++    ++++++.-+.+.|....-+..+++||++||+ |+|++++++.+++
T Consensus        23 l~~if~vE~WERFsyYGmraiL~~Yl~~~~~~gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~lGail~  102 (498)
T COG3104          23 LYLIFFVELWERFSYYGMRAILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGAILM  102 (498)
T ss_pred             HHHHHHHHHHHHHhhhhhHHHHHHHHHHhccccCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence            444555555555554444333 334555555    9999998888888888889999999999995 9999999999999


Q ss_pred             HHHHHHHHHhh-hHHHHHHHHHHHHHhhcccchHhHHHHHHhcCCCC--chhhHHHHHHhhhhhHHHHHHhhHHHhhhcc
Q 014481          190 SLATALLPLLA-GFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLE--ERSRAVSFVFGGLSFGSVAGLLLAPPIIENL  266 (423)
Q Consensus       190 ~~~~~~~~~~~-~~~~~~~~~~~l~G~~~~~~~~~~~~~i~~~~~~~--~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~  266 (423)
                      +++.++++..+ .....++++.++.++|.|..-+...++++|.+|++  +|-..+++++.+.++|+.++|++.+++.+..
T Consensus       103 ~iGh~~L~~~~~~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i~~~~~~~~  182 (498)
T COG3104         103 AIGHLVLAISSVSGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPIITGLLAINY  182 (498)
T ss_pred             HHHHHHHhccccccccHHHHHHHHHHhccccccccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHHHHHHHHhh
Confidence            99998885443 34577888888899999999999999999999754  4788899999999999999999999999999


Q ss_pred             CchHHHHHHHHHHHHHHHHHHhhccC
Q 014481          267 GWESVFYIFGLLGIAWFSGFKILQEG  292 (423)
Q Consensus       267 gw~~~~~~~~~~~~~~~~~~~~~~~~  292 (423)
                      ||...|...++-..+.++.+.+.++.
T Consensus       183 g~~~gF~~aavGm~~gl~~f~~~~r~  208 (498)
T COG3104         183 GWHVGFGLAAVGMIIGLVIFLLGRRH  208 (498)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHccch
Confidence            99999999888887777777666543

>TIGR00889 2A0110 nucleoside transporter

Probab=99.63  E-value=6.4e-15  Score=140.60  Aligned_cols=160  Identities=19%  Similarity=0.255  Sum_probs=127.9

Q ss_pred             hhhhHHHhhhhhCCCc--------chhhHHHHHHHHHHHhhhhhhhhHhhHhcCchHHHHHHHHHHHHHHHHHHhhh---
Q 014481          133 LSVAIIPMSHRFGWNS--------SVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAG---  201 (423)
Q Consensus       133 ~~~~~~~~~~~~~~s~--------~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~---  201 (423)
                      .....+.+.++.|.++        ...+...++..++..++.++.|+++||+|+|+++.++.++.++...+......   
T Consensus       227 ~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~~~~~~~  306 (418)
T TIGR00889       227 TNIFGNGFLHEFGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAYGDPEYF  306 (418)
T ss_pred             HHHhHHHHHHHhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCcchh
Confidence            3344455555666443        56799999999999999999999999999999999999988887655533222   


Q ss_pred             HHHHHHHHHHHHHhhcccchHhHHHHHHhcCCCCchhhHHHHHH-hhhhhHHHHHHhhHHHhhhc------cCchHHHHH
Q 014481          202 FMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVF-GGLSFGSVAGLLLAPPIIEN------LGWESVFYI  274 (423)
Q Consensus       202 ~~~~~~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~-~~~~~g~~~g~~~~~~l~~~------~gw~~~~~~  274 (423)
                      +++.+++.+++.|++.+...+....++.+++|+++|++++|+.+ ....+|..+||+++|.+.++      +||++.|.+
T Consensus       307 ~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~  386 (418)
T TIGR00889       307 GYALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLF  386 (418)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHH
Confidence            23556778999999988888888999999999999999999997 67889999999999999987      469999998


Q ss_pred             HHHHHHHHHHHH-HhhccC
Q 014481          275 FGLLGIAWFSGF-KILQEG  292 (423)
Q Consensus       275 ~~~~~~~~~~~~-~~~~~~  292 (423)
                      .+++.++..++. ++++++
T Consensus       387 ~~~~~~i~~~l~~~~~~~~  405 (418)
T TIGR00889       387 FAGYIAILAVLFMIFFKYS  405 (418)
T ss_pred             HHHHHHHHHHHHHHHhCCc
Confidence            888876664444 444443

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=99.62  E-value=3.7e-13  Score=129.03  Aligned_cols=241  Identities=17%  Similarity=0.105  Sum_probs=176.4

Q ss_pred             hhhHHHHHHHHHHHhhhhhhhhHhhHhcCchHHHHHHHHHHH-HHHHHHHh-hhHHHHHHHHHHHHHhhcccchHhHHHH
Q 014481          150 VAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSL-ATALLPLL-AGFMPGLVLSRVLVGIGEGVSPSAATDL  227 (423)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~l~G~~~~~~~~~~~~~  227 (423)
                      ..++..++..+..++..|+.|.++|+-|+||.++....+.++ .++++.+. .+.++...++.++.-++.+.......++
T Consensus        71 ~~~~~~sis~l~~all~P~lGa~aD~~~~Rk~~l~~~~~~~~~~~~~l~~v~~~~~~~~~~l~iia~v~~~~~~vfyna~  150 (477)
T PF11700_consen   71 LWLYANSISGLLQALLAPFLGAIADYGGRRKRFLLIFTLLGVLATALLWFVSPGQWWLALVLFIIANVGYEASNVFYNAY  150 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            356778899999999999999999999988888776555444 34444333 3444455555566667777888889999


Q ss_pred             HHhcCCCCch--------------------------hhHHHHHHhhhhhHHHHHHhhHHHhhhc--------cCchHHHH
Q 014481          228 IARSIPLEER--------------------------SRAVSFVFGGLSFGSVAGLLLAPPIIEN--------LGWESVFY  273 (423)
Q Consensus       228 i~~~~~~~~r--------------------------~~~~~~~~~~~~~g~~~g~~~~~~l~~~--------~gw~~~~~  273 (423)
                      +.+..+++++                          ++..+.-.....+|+++.-++.-.+...        .+.|..+.
T Consensus       151 LP~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l~~~~~~~~~~~~~~~~r~~~~  230 (477)
T PF11700_consen  151 LPDLARPEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLISLLLVISPGSTASNTWAIRVAFL  230 (477)
T ss_pred             hHhhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccchhhhHHHH
Confidence            9999998888                          8999998888888888877776555322        23477777


Q ss_pred             HHHHHHHHHHH-HHHhhccCCcCcCCCCCcchhhhhhhhhhhhhHHhhccccCCCcHHHhhhcHHHHHHHHHHHHHHHHH
Q 014481          274 IFGLLGIAWFS-GFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGH  352 (423)
Q Consensus       274 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  352 (423)
                      +.++.-++..+ .++++|+.+++...+..... .   ....++.         ...++++.++|.+..++++.+++.-+.
T Consensus       231 ~~a~ww~vfsiP~~~~~~~~~~~~~~~~~~~~-~---~~g~~~l---------~~t~k~~~~~~~~~~fLia~~l~~dg~  297 (477)
T PF11700_consen  231 IVALWWLVFSIPLFLWLPDRPGPRPLPSGSSY-L---RFGFKRL---------WRTFKEIRKLRQLFLFLIAYFLYSDGV  297 (477)
T ss_pred             HHHHHHHHHHHHHHHhCCCCCCCCCCCcchhH-H---HHHHHHH---------HHHHHHHHhChHHHHHHHHHHHHHHHH
Confidence            77777665544 44455554432211111110 0   0000000         012567778899999999999999999


Q ss_pred             HHHHhhhhHHHHHhhCCChhhHHHHHHHHHHHHHHHHHHHHHHhHHhhhcC
Q 014481          353 YTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATG  403 (423)
Q Consensus       353 ~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~r~  403 (423)
                      ..+......|.++.+|++..+...+..+..+.+++|.++.|++.||+|.|.
T Consensus       298 ~ti~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~  348 (477)
T PF11700_consen  298 NTIISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKT  348 (477)
T ss_pred             HHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCch
Confidence            999999999999999999999999999999999999999999999999883

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.61  E-value=5e-14  Score=133.73  Aligned_cols=157  Identities=16%  Similarity=0.121  Sum_probs=126.0

Q ss_pred             hhhhHHH-hhhhhCCCcchhhHHHHHHHHHHHhhhhhhhhHhhHhcCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 014481          133 LSVAIIP-MSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSRV  211 (423)
Q Consensus       133 ~~~~~~~-~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (423)
                      +....|. +.+++|.++.+.+++.+...+...++.++.|+++||+|+|+.+..+.+...+..... ...++.+.+++.++
T Consensus       235 ~~~~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~  313 (393)
T PRK15011        235 YIINMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGM-LMAHSPAILLGLQL  313 (393)
T ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHH-HHHhhHHHHHHHHH
Confidence            3445555 556789999999999888888888899999999999999998887766554443333 34556667777888


Q ss_pred             HHHhhcccchHhHHHHHHhcCCCCchhhHHHHHHhhhhhHHHHHHhhHHHhhhccCchHHHHHHHHHHHHHHHHHHhhcc
Q 014481          212 LVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFSGFKILQE  291 (423)
Q Consensus       212 l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw~~~~~~~~~~~~~~~~~~~~~~~  291 (423)
                      +.+++.+...+....+..|.+| ++|++++++++...++|..+||.++|.+.+..||+..|++.+++.++.++..++.++
T Consensus       314 l~~~~~g~~~~~~~~~~~~~~p-~~~g~~~~~~~~~~~lg~~~g~~l~G~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  392 (393)
T PRK15011        314 LNAIYIGILGGIGMLYFQDLMP-GQAGSATTLYTNTSRVGWIIAGSLAGIVAEIWNYHAVFWFALVMIIATLFCLLRIKD  392 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCC-CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhcC
Confidence            8888777776777788889888 569999999999999999999999999999999999999888888777776666643

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.61  E-value=5.5e-14  Score=133.85  Aligned_cols=160  Identities=21%  Similarity=0.149  Sum_probs=130.8

Q ss_pred             hhhhhHHHhhhhhCCCcchhhHHHHHHHHHHHhhhhhhhhHhhHhcCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 014481          132 NLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSRV  211 (423)
Q Consensus       132 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (423)
                      .....++.+.++.|.  ...++..+.+.++..++.++.|++.||+|+|+.+..+..+.+++.++.. ..++.+.+++..+
T Consensus       234 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~  310 (399)
T PRK05122        234 TIATFITLYYAARGW--DGAALALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLW-LAPSPWMALIGAA  310 (399)
T ss_pred             HHHHHHHHHHHHccc--ccchHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH-HhccHHHHHHHHH
Confidence            334445555455565  3456777888899999999999999999999999888888777776653 4556677778889


Q ss_pred             HHHhhcccchHhHHHHHHhcCCCCchhhHHHHHHhhhhhHHHHHHhhHHHhhhccCchHHHHHHHHHHHHHHHHHHhhcc
Q 014481          212 LVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFSGFKILQE  291 (423)
Q Consensus       212 l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw~~~~~~~~~~~~~~~~~~~~~~~  291 (423)
                      +.|++.+...+.....+.+.+|+++|++++|+++....+|..+++++.|.+.+..||++.|++.+++.++.++..+++++
T Consensus       311 l~G~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  390 (399)
T PRK05122        311 LTGFGFSLVFPALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVASWFGYPSIFLAAALAALLGLALTWLLYR  390 (399)
T ss_pred             HHHHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            99999988888888888899999999999999999999999999999999999999999999988888777666666655


Q ss_pred             CCc
Q 014481          292 GET  294 (423)
Q Consensus       292 ~~~  294 (423)
                      +++
T Consensus       391 ~~~  393 (399)
T PRK05122        391 RAP  393 (399)
T ss_pred             ccc
Confidence            444

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=99.61  E-value=4.7e-15  Score=118.84  Aligned_cols=134  Identities=29%  Similarity=0.504  Sum_probs=117.1

Q ss_pred             HHHHHHHHHhhhhhhhhHhhHhcCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcccchHhHHHHHHhcCCC
Q 014481          155 QSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPL  234 (423)
Q Consensus       155 ~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~i~~~~~~  234 (423)
                      .+.+.++..++.++.|++.||+|||+.+..+..+..++.++. ...++.+.+.+.+++.|++.+...+....++.|.+|+
T Consensus         4 ~~~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~   82 (141)
T TIGR00880         4 LAGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMF-ALSSNITVLIIARFLQGFGAAFALVAGAALIADIYPP   82 (141)
T ss_pred             EEeehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHH-HHhccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCCh
Confidence            445678888999999999999999999999988888777666 3456678888999999999999999999999999999


Q ss_pred             CchhhHHHHHHhhhhhHHHHHHhhHHHhhhccCchHHHHHHHHHHHHHHHHHHhh
Q 014481          235 EERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFSGFKIL  289 (423)
Q Consensus       235 ~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw~~~~~~~~~~~~~~~~~~~~~  289 (423)
                      ++|++++++.+....+|..++|.+++.+.+..+|++.+++.+++.++..+...++
T Consensus        83 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (141)
T TIGR00880        83 EERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFILLAFL  137 (141)
T ss_pred             hhhhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHHHHhhc
Confidence            9999999999999999999999999999998999999999888777665554444

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=99.60  E-value=4.3e-14  Score=141.50  Aligned_cols=140  Identities=12%  Similarity=0.031  Sum_probs=117.5

Q ss_pred             HHHHHHHHHHHhhhhhhhhHhhHhcCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcccchHhHHHHHHhcC
Q 014481          153 LVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSI  232 (423)
Q Consensus       153 ~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~i~~~~  232 (423)
                      +...+..++.+++.++.|+++||+|||++++++.++.+++.++++ +.++...+++++++.|++.++.++...++++|++
T Consensus       599 ~~~~l~~l~~i~G~il~g~L~Dr~GRr~~l~~~~~lsai~~ll~~-~~~s~~~ll~~~~l~g~~~~~~~~~~~a~~aEl~  677 (742)
T TIGR01299       599 FVNFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCISCFFLS-FGNSESAMIALLCLFGGLSIAAWNALDVLTVELY  677 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHH-HHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            345567788899999999999999999999999999888887774 4444466777788888888888899999999999


Q ss_pred             CCCchhhHHHHHHhhhhhHHHHHHhhHHHhhhccCchHHHHHHHHHHHHHHHHHHhhccCCc
Q 014481          233 PLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFSGFKILQEGET  294 (423)
Q Consensus       233 ~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (423)
                      |.+.|++++|+.+....+|.++||++++.+.+. +...+|++.+++.++.+++..++||+..
T Consensus       678 Pt~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~~-~~~~pf~i~a~~lll~~ll~~~LPET~~  738 (742)
T TIGR01299       678 PSDKRATAFGFLNALCKAAAVLGILIFGSFVGI-TKAAPILFASAALACGGLLALKLPDTRG  738 (742)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHhCCCCcc
Confidence            999999999999999999999999999988765 4567788888877777777777776543

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.59  E-value=1.4e-14  Score=138.87  Aligned_cols=147  Identities=12%  Similarity=0.048  Sum_probs=124.2

Q ss_pred             hCCCcchhhHHHHHHHHHHHhhhhhhhhHhhHhcCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcccchHh
Q 014481          144 FGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSRVLVGIGEGVSPSA  223 (423)
Q Consensus       144 ~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~  223 (423)
                      .+.+..+.|++.++..++..++.+++|++.||+|+|+.+.++.++.+++.++.+ +.++.+.+++++++.|++.+...+.
T Consensus       257 ~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~-~~~~~~~~~~~~~l~g~~~~~~~~~  335 (420)
T PRK09528        257 PEQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSG-FATGPLEVSILKLLHAFEVPFLLVG  335 (420)
T ss_pred             cCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHH-hcccHHHHHHHHHHHHHHHHHHHHH
Confidence            356667889999999999999999999999999999999998888888776664 4566678888899999988887788


Q ss_pred             HHHHHHhcCCCCchhhHHHH-HHhhhhhHHHHHHhhHHHhhhccCchHHHHHHHHHHHHHHHHHHhhcc
Q 014481          224 ATDLIARSIPLEERSRAVSF-VFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFSGFKILQE  291 (423)
Q Consensus       224 ~~~~i~~~~~~~~r~~~~~~-~~~~~~~g~~~g~~~~~~l~~~~gw~~~~~~~~~~~~~~~~~~~~~~~  291 (423)
                      ...++.+.+|++.+++..+. ++....+|.+++|.+.|++.+..||+..|++.+++.++..+..++..+
T Consensus       336 ~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G~~~~f~~~~~~~~i~~~~~~~~~~  404 (420)
T PRK09528        336 VFKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSIGFQGTYLILGGIVLLFTLISVFTLS  404 (420)
T ss_pred             HHHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHhc
Confidence            88899999999889888765 677889999999999999999999999999988887766544444433

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.59  E-value=2.4e-14  Score=134.87  Aligned_cols=150  Identities=16%  Similarity=0.124  Sum_probs=125.2

Q ss_pred             hhhhHHHhhhhhCCCcchhhHHHHHHHHHHHhhhhhhhhHhhHhcCchHHHHHHHHHHHHHHHHHHhhh-HHHHHHHHHH
Q 014481          133 LSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAG-FMPGLVLSRV  211 (423)
Q Consensus       133 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  211 (423)
                      .....+.+.+++|.+..+.+++.+.+.++..++.++.|++.||+|||+.+.++.++.+++.++...... +...+++..+
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (377)
T TIGR00890       224 LIGLYKPYGQSLGLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLFIPMLNDVLFLATVA  303 (377)
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHcccchhHHHHHHHH
Confidence            334455566788999889999999999999999999999999999999999988887777765533222 2233445677


Q ss_pred             HHHhhcccchHhHHHHHHhcCCCCchhhHHHHHHhhhhhHHHHHHhhHHHhhhccCchHHHHHHHHHHHHH
Q 014481          212 LVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAW  282 (423)
Q Consensus       212 l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw~~~~~~~~~~~~~~  282 (423)
                      +.|++.+...+....++.|.+|+++|++++|+.+....+|..++|.+.+.+.+..||++.|++.+++.++.
T Consensus       304 ~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f~~~~~~~~~~  374 (377)
T TIGR00890       304 LVFFTWGGTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALTEIGFEYTFIVTGAFALTS  374 (377)
T ss_pred             HHHHHhccchhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHh
Confidence            88888888888888899999999999999999999999999999999999999999999999888776654

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=99.57  E-value=5e-13  Score=124.81  Aligned_cols=269  Identities=14%  Similarity=0.140  Sum_probs=197.8

Q ss_pred             HHHHHHHHHHhhhhhhhhhHHH-hhhhhCCCcchhhHHHHHHHHHHHhhhhhhhhHhhH----hcCchH-HHHHHHHHHH
Q 014481          118 TTSLAFVICNMDKVNLSVAIIP-MSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKI----FGGRKV-LQTGVLIWSL  191 (423)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr----~G~r~~-~~~~~~~~~~  191 (423)
                      ...++-+...+.......++.. +.+.+|+++..+|.++.+.-+--++..|+.|.++||    +||+|. ++++.+..++
T Consensus        16 ~Yg~gd~~~~~~~~~~~~yLl~fYTdv~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i   95 (467)
T COG2211          16 GYGLGDFASNFAFGIVVLYLLFFYTDVFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAI   95 (467)
T ss_pred             hhcchhhHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHHHH
Confidence            4444555555555555555555 667789999999999999999999999999999996    677555 4556677777


Q ss_pred             HHHHHHHhhh------HHHHHHHHHHHHHhhcccchHhHHHHHHhcCC-CCchhhHHHHHHhhhhhHHHHHHhhHHHhhh
Q 014481          192 ATALLPLLAG------FMPGLVLSRVLVGIGEGVSPSAATDLIARSIP-LEERSRAVSFVFGGLSFGSVAGLLLAPPIIE  264 (423)
Q Consensus       192 ~~~~~~~~~~------~~~~~~~~~~l~G~~~~~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~  264 (423)
                      ...++ +.++      .....++..++.+++......+..++.+++.+ ++||.+..++-..+.++|..+...+.+.+..
T Consensus        96 ~~~l~-F~~p~~~~~~k~~ya~vtY~l~~l~YT~vniPy~al~~~iT~d~~ER~~l~s~R~~~~~~g~~l~~~~~~plv~  174 (467)
T COG2211          96 VAVLL-FITPDFSMTGKLIYALVTYMLLGLGYTLVNIPYGALGPEITQDPQERASLTSWRMVFASLGGLLVAVLFPPLVK  174 (467)
T ss_pred             HHHHH-HcCCCcccCcchHHHHHHHHHHHHHHHheeCchhhcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            77666 3443      23456677788999999988888999999984 6889999999999999987777666655553


Q ss_pred             -------ccCchHHHHHHHHHHHHHHHHHHhh-ccCCcCcCCCCCcchhhhhhhhhhhhhHHhhccccCCCcHHHhhhcH
Q 014481          265 -------NLGWESVFYIFGLLGIAWFSGFKIL-QEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSK  336 (423)
Q Consensus       265 -------~~gw~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  336 (423)
                             ..||+...++.+++.++..+..++- +|+..+..... ...+. .                -...+..+++|+
T Consensus       175 ~~g~~~~~~g~~~~~~~~~vi~~i~~l~~~~~v~ER~~~~~~~~-~~~~~-~----------------~~~~~~~~~~Nr  236 (467)
T COG2211         175 LFGGGDKALGYQGTALVLGVIGVILLLFCFFNVKERVVETQPTK-TGVKL-K----------------LKDSFLLIFKNR  236 (467)
T ss_pred             HhCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcccCccccCc-ccccc-c----------------HHHHHHHHHccc
Confidence                   3478888888888877765555443 33332111111 00000 0                000134678999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhHHHHHhhCCChhhHHHHHHHHHHHHHHHHHHHHHHhHHhhhcCCc
Q 014481          337 AVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVE  405 (423)
Q Consensus       337 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~r~~~  405 (423)
                      .+...++..++...+.....+....|.+...|.+.....+.......+.+++.++..++.+|+|+|+.-
T Consensus       237 p~~~~l~~~l~~~~~~~i~~s~~~yy~~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~  305 (467)
T COG2211         237 PLLLLLLMNLLLFIAFNIRGSIMVYYVTYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLF  305 (467)
T ss_pred             hHHHHHHHHHHHHHHHHHHhhhhheeEEEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHH
Confidence            999999888888888888888888888888888888888888888899998899999999999988553

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=99.57  E-value=2.2e-12  Score=115.38  Aligned_cols=247  Identities=17%  Similarity=0.127  Sum_probs=168.8

Q ss_pred             hhhhhhhhhHHHhhhhhCCCcchhhHHHHHHHHHHHhhhhhhhhHhhHhcCchHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 014481          128 MDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLV  207 (423)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~  207 (423)
                      ......+|+.-.+.+++|++..+++.+........++..++.|.++||+|||+..++.+++++++++.-  ..++++.++
T Consensus        48 ~aDWLQGpY~Y~LY~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl~k--~~~~~~~L~  125 (354)
T PF05631_consen   48 AADWLQGPYLYALYESYGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCLTK--HSSNYPVLL  125 (354)
T ss_pred             HHHHhhcchhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHH--hccccHHHH
Confidence            344455565556667899999999999999999999999999999999999999999999998888543  457789999


Q ss_pred             HHHHHHHhhcccchHhHHHHHH-hcC----CCCchhhHHHHHH-hhhhhHHHHHHhhHHHhhhccCc--hHHHHHHHHHH
Q 014481          208 LSRVLVGIGEGVSPSAATDLIA-RSI----PLEERSRAVSFVF-GGLSFGSVAGLLLAPPIIENLGW--ESVFYIFGLLG  279 (423)
Q Consensus       208 ~~~~l~G~~~~~~~~~~~~~i~-~~~----~~~~r~~~~~~~~-~~~~~g~~~g~~~~~~l~~~~gw--~~~~~~~~~~~  279 (423)
                      ++|++.|++.+....+--++.. |.-    |++..+..++... ...++-.++..+++.++.+..+.  ..+|.....+.
T Consensus       126 ~GRvlgGiaTSLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~vaPF~~a~~~l  205 (354)
T PF05631_consen  126 LGRVLGGIATSLLFSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFGFGPVAPFDAAIVLL  205 (354)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCCCcchHHHHHHHH
Confidence            9999999999988887766543 332    2222233333333 23344455566666677665554  77888777776


Q ss_pred             HHHHHHHH-hhccCCcCcCCCCCcchhhhhhhhhhhhhHHhhccccCCCcHHHhhhcHHHHHHHHHHHHHHHHHHHHHh-
Q 014481          280 IAWFSGFK-ILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLS-  357 (423)
Q Consensus       280 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-  357 (423)
                      ++..++.. ..+|+....... .+..      +...            ..++.+.+||+++.+.+...+.-...+.+.. 
T Consensus       206 ~~~~~~I~~~W~ENyg~~~~~-~~~~------~~~~------------~a~~~i~~d~ril~LG~~qslFE~smy~FVfl  266 (354)
T PF05631_consen  206 AVAAVLILKTWPENYGDTSSS-SSLS------GSFR------------EAWRAILSDPRILLLGLIQSLFEGSMYLFVFL  266 (354)
T ss_pred             HHHHHHHHhcccccCCCcccc-cchH------HHHH------------HHHHHHHcCchhHHHHHHHHHHHHHHHHheee
Confidence            66544433 344443321111 0000      0000            0246778899999999999888888877765 


Q ss_pred             hhhHHHHHhhCCChhhHHHHHHHHHHHHHHHHHHHHHHhHH
Q 014481          358 WLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADN  398 (423)
Q Consensus       358 ~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr  398 (423)
                      |.|..-.+   -...--|++++.+.++.++|..+..++..+
T Consensus       267 WtPaL~~~---~~~~P~GlIFssFM~a~MlGS~lf~~l~s~  304 (354)
T PF05631_consen  267 WTPALDPD---DEELPLGLIFSSFMVAMMLGSSLFSRLLSK  304 (354)
T ss_pred             eeceecCC---CCCCCchHHHHHHHHHHHHHHHHHHHHHhC
Confidence            45554421   123346889999999999999888766554

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.57  E-value=1e-13  Score=132.29  Aligned_cols=160  Identities=23%  Similarity=0.077  Sum_probs=127.6

Q ss_pred             hhhhhhhHHHhhhhhCCCcchhhHHHHHHHHHHHhhhhhhhhHhhHhcCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 014481          130 KVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLS  209 (423)
Q Consensus       130 ~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (423)
                      ........|.+.++.|.+..+.+++.+...++..++.++.|++.||+|+|+.+.++.+..+++.++. ...++.+.+.+.
T Consensus       236 ~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~  314 (406)
T PRK11551        236 LYFLLNWLPSLLVGQGLSRSQAGLVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAAL-AAAPSFAGMLLA  314 (406)
T ss_pred             HHHHHHHHHHHHHhCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH-HhcCcHHHHHHH
Confidence            3344455777777889999999999999999999999999999999999999888766666655544 334455666677


Q ss_pred             HHHHHhhcccchHhHHHHHHhcCCCCchhhHHHHHHhhhhhHHHHHHhhHHHhhhccC-chHHHHHHHHHHHHHHHHHHh
Q 014481          210 RVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLG-WESVFYIFGLLGIAWFSGFKI  288 (423)
Q Consensus       210 ~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g-w~~~~~~~~~~~~~~~~~~~~  288 (423)
                      .++.|++.+...+...+++.+.+|+++|++++|+.+....+|..+||.++|.+.+..+ |...+++.+...++.++..+.
T Consensus       315 ~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  394 (406)
T PRK11551        315 GFAAGLFVVGGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLALGRSTVGVIGASIPVILVAALAALL  394 (406)
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhccCCchHHHHHHHHHHHHHHHHHHHH
Confidence            7888888877888889999999999999999999999999999999999999988754 555666665555555544444


Q ss_pred             hc
Q 014481          289 LQ  290 (423)
Q Consensus       289 ~~  290 (423)
                      +.
T Consensus       395 ~~  396 (406)
T PRK11551        395 LV  396 (406)
T ss_pred             Hh
Confidence            43

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.56  E-value=1.7e-13  Score=127.74  Aligned_cols=165  Identities=28%  Similarity=0.356  Sum_probs=142.1

Q ss_pred             HHHHHhhhhhhhhhHHHhhhhh-CCCcchhhHHHHHHHHHHHhhhhhhhhHhhHhcCch-HHHHHHHHHHHHHHHHHHhh
Q 014481          123 FVICNMDKVNLSVAIIPMSHRF-GWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRK-VLQTGVLIWSLATALLPLLA  200 (423)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~-~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~-~~~~~~~~~~~~~~~~~~~~  200 (423)
                      .+.............+.+.++. |.+..+.++..+...++..++.++.+++.||+|+|+ .+.++..+..++.++.. ..
T Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~  262 (352)
T cd06174         184 FFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLA-LA  262 (352)
T ss_pred             HHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH-Hh
Confidence            3334444555556666655554 899999999999999999999999999999999999 99999888888877764 45


Q ss_pred             hHHHHHHHHHHHHHhhcccchHhHHHHHHhcCCCCchhhHHHHHHhhhhhHHHHHHhhHHHhhhccCchHHHHHHHHHHH
Q 014481          201 GFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGI  280 (423)
Q Consensus       201 ~~~~~~~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw~~~~~~~~~~~~  280 (423)
                      ++.+.+++..++.|++.+...+....++.+..|+++|++.+|+.+....+|..+++.+.+.+.+..+|++.+++.+++.+
T Consensus       263 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~~~~~~~~~~~~~~~~  342 (352)
T cd06174         263 PSLALLLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALAL  342 (352)
T ss_pred             ccHHHHHHHHHHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHH
Confidence            55678889999999999999999999999999999999999999999999999999999999998999999999999888


Q ss_pred             HHHHHHHh
Q 014481          281 AWFSGFKI  288 (423)
Q Consensus       281 ~~~~~~~~  288 (423)
                      +..+..++
T Consensus       343 i~~i~~~~  350 (352)
T cd06174         343 LAALLLLL  350 (352)
T ss_pred             HHHHHhee
Confidence            77665543

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.56  E-value=2.6e-13  Score=127.96  Aligned_cols=152  Identities=16%  Similarity=0.150  Sum_probs=124.7

Q ss_pred             hHHH-hhhhhCCCcchhhHHHHHHHHHHHhhhhhhhhHhhHhcCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 014481          136 AIIP-MSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSRVLVG  214 (423)
Q Consensus       136 ~~~~-~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G  214 (423)
                      .+|. +.+++|.++.+.+++.+...+...++.++.|++.||+|+|+.+.++.++..+..... ...++.+.+++.+++.|
T Consensus       221 ~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g  299 (375)
T TIGR00899       221 NMPLLIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGL-AADNSLWALLMLQLLNA  299 (375)
T ss_pred             hhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence            3444 457789999999998888877788889999999999999999988776655544433 34456677778888999


Q ss_pred             hhcccchHhHHHHHHhcCCCCchhhHHHHHHhhhhhHHHHHHhhHHHhhhccCchHHHHHHHHHHHHHHHHHHhh
Q 014481          215 IGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFSGFKIL  289 (423)
Q Consensus       215 ~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw~~~~~~~~~~~~~~~~~~~~~  289 (423)
                      ++.+...+....++.|..| +++++++++++....+|..++|.+++.+.+..||+..|++.+++.++..+...++
T Consensus       300 ~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~g~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  373 (375)
T TIGR00899       300 IFIGILAGIGMLYFQDLMP-GRAGAATTLYTNTGRVGWIIAGSVGGILAERWSYHAVYWFAIVMLIVALFCLLLI  373 (375)
T ss_pred             HHHHHHHHHHHHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhee
Confidence            9888888888888999887 5677999999999999999999999999999999999999888877766665544

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=99.56  E-value=3.2e-14  Score=128.55  Aligned_cols=179  Identities=19%  Similarity=0.121  Sum_probs=145.0

Q ss_pred             hhHHHHHHHHHHHHHHHhhhhhhhhhHHH-hhhhhCCCcchhhHHHHHHHHHHHhhhhhhhhHhhHh--cCchHHHHHHH
Q 014481          111 QRYKLIGTTSLAFVICNMDKVNLSVAIIP-MSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIF--GGRKVLQTGVL  187 (423)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~--G~r~~~~~~~~  187 (423)
                      -+.+.++.+++++++.+..++.+....|. +.|..|.|...+++..+.+-++...|.+++|+++||+  |||.+..+...
T Consensus       249 L~Nk~iW~la~a~vfvYivR~gi~dW~p~YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~~~i~~  328 (448)
T COG2271         249 LKNKLIWLLALANVFVYVVRYGINDWGPLYLSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGRRGPMALIFM  328 (448)
T ss_pred             HcChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccchHHHHHH
Confidence            34567888999999999999999988887 6677899999999999999999999999999999996  77766655443


Q ss_pred             HHHHHHHHHHHhh--hHHHHHHHHHHHHHhhcccchHhHHHHHHhcCCCCchhhHHHHHHhhhhh-HHHHHHhhHHHhhh
Q 014481          188 IWSLATALLPLLA--GFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSF-GSVAGLLLAPPIIE  264 (423)
Q Consensus       188 ~~~~~~~~~~~~~--~~~~~~~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-g~~~g~~~~~~l~~  264 (423)
                      +....+++....+  .+++...++.++.|+..-+-.-.......|..|++--|++.|+...+..+ |...+....+++.|
T Consensus       329 ~~i~~~~~~~w~~~~~~~~l~~~~l~~iGf~IyGPqmLiGl~a~e~~pK~AaGtA~Gf~Glf~Yl~Ga~~a~~~~g~i~d  408 (448)
T COG2271         329 LLITASLVLYWLAPNGSYLLDAILLFIIGFLIYGPQMLIGLAAAEFVPKKAAGTATGFVGLFAYLIGAALAGLPLGYIAD  408 (448)
T ss_pred             HHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHhhHHHHHHHHHhccccHhhccchhchhhhHHHHhhHHhcCCcceeeEe
Confidence            3333333332333  34577778888899887777777788889999999999999999999999 99999999999999


Q ss_pred             ccCchHHHHHHHHHHHHHHHHHHhh
Q 014481          265 NLGWESVFYIFGLLGIAWFSGFKIL  289 (423)
Q Consensus       265 ~~gw~~~~~~~~~~~~~~~~~~~~~  289 (423)
                      .+||...|++..+.++++.++...+
T Consensus       409 ~~gW~g~Fi~~~~~a~l~~lll~~~  433 (448)
T COG2271         409 TWGWDGGFIVLSIAALLAILLLLPV  433 (448)
T ss_pred             cCCCcchHHHHHHHHHHHHHHHHHH
Confidence            9999999999888877765554444

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.56  E-value=8.2e-14  Score=133.03  Aligned_cols=158  Identities=20%  Similarity=0.158  Sum_probs=126.3

Q ss_pred             hhhhhhHHHhhhhhCCCcc----hhhHHHHHHHHHHHhhhhhhhhHhhHhcCchHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 014481          131 VNLSVAIIPMSHRFGWNSS----VAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGL  206 (423)
Q Consensus       131 ~~~~~~~~~~~~~~~~s~~----~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (423)
                      ....+.++.+..+.+.+..    ..+.+.++..++..++.++.|++.||+|||+.+.++.++..++.+.. ...++.+.+
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~  314 (408)
T PRK09874        236 GSIAPILTLYVRELAGNVSNIAFISGMIASVPGVAALLSAPRLGKLGDRIGPEKILITALIFSVLLLIPM-SFVQTPLQL  314 (408)
T ss_pred             HHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHH-HHhccHHHH
Confidence            3344455555444433332    24566667778888999999999999999999999888776666554 344556778


Q ss_pred             HHHHHHHHhhcccchHhHHHHHHhcCCCCchhhHHHHHHhhhhhHHHHHHhhHHHhhhccCchHHHHHHHHHHHHHHHHH
Q 014481          207 VLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFSGF  286 (423)
Q Consensus       207 ~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw~~~~~~~~~~~~~~~~~~  286 (423)
                      ++.+++.|++.+...+...+++.+..++++||+.+++++....+|..+||.++|.+.+..||++.|++.+++.++..+..
T Consensus       315 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~  394 (408)
T PRK09874        315 GILRFLLGAADGALLPAVQTLLVYNSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISANYGFRAVFLVTAGVVLFNAVYS  394 (408)
T ss_pred             HHHHHHHHhhhHhhHHHHHHHHHHhCCcccceeeehHHHHHHHHHHHhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHH
Confidence            88899999999999999999999999989999999999999999999999999999999999999999998887766555


Q ss_pred             Hhh
Q 014481          287 KIL  289 (423)
Q Consensus       287 ~~~  289 (423)
                      ++.
T Consensus       395 ~~~  397 (408)
T PRK09874        395 WNS  397 (408)
T ss_pred             HHH
Confidence            443

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=99.55  E-value=1.6e-13  Score=133.22  Aligned_cols=174  Identities=15%  Similarity=0.068  Sum_probs=128.0

Q ss_pred             HHHHHHHHHHHHhhhhhhhhhHHH-hhhhhCCCcchhhHHHHHHHHHHHhhhhhhhhHhhHhcCchHHHHHHHHHHHHHH
Q 014481          116 IGTTSLAFVICNMDKVNLSVAIIP-MSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATA  194 (423)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~  194 (423)
                      +..+++..++............|. +.+++|++..+.++..+...++..++.+++|+++||+|||+.++....+..++..
T Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~~~~~~~~~~~~  339 (467)
T PRK09556        260 IWLLCFANIFLYIVRIGIDNWSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLANGRRALVACIALALIIFT  339 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHH
Confidence            334444555555555555666775 5567999999999999999999999999999999999999887765544443322


Q ss_pred             HHH-HhhhHHHHHHHHHHHHHhhcccchHhHHHHHHhcCCCCchhhHHHHHHhhhhh-HHHHHHhhHHHhhh--------
Q 014481          195 LLP-LLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSF-GSVAGLLLAPPIIE--------  264 (423)
Q Consensus       195 ~~~-~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-g~~~g~~~~~~l~~--------  264 (423)
                      +.. ...++.+.+.+++++.|++.............|.+|++.||++.|+.+...++ |..++|.+.|.+.+        
T Consensus       340 ~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~  419 (467)
T PRK09556        340 LGVYQHATSEYMYLASLFALGFLVFGPQLLIGVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIADPTKNGTPI  419 (467)
T ss_pred             HHHHHhcCcHHHHHHHHHHHHHHHhhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhccccccccc
Confidence            221 22344455667778888654443334446777999999999999999998886 77999999999999        


Q ss_pred             ----ccCchHHHHHHHHHHHHHHHHHHhh
Q 014481          265 ----NLGWESVFYIFGLLGIAWFSGFKIL  289 (423)
Q Consensus       265 ----~~gw~~~~~~~~~~~~~~~~~~~~~  289 (423)
                          ..||+..|++.++..++.++..+++
T Consensus       420 ~~~~~~~~~~~f~~~~~~~~~~~~~~~~~  448 (467)
T PRK09556        420 FGYTLTGWAGTFAALDIAAIGCICLMAIV  448 (467)
T ss_pred             ccccccChHHHHHHHHHHHHHHHHHHHHH
Confidence                5689999999877777765555544

>PRK03545 putative arabinose transporter; Provisional

Probab=99.55  E-value=2.7e-13  Score=128.59  Aligned_cols=153  Identities=18%  Similarity=0.095  Sum_probs=123.3

Q ss_pred             HHHhhhhhCCCcchhhHHHHHHHHHHHhhhhhhhhHhhHhcCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhh
Q 014481          137 IIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSRVLVGIG  216 (423)
Q Consensus       137 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~  216 (423)
                      .+.+.+.+|.+..+.+++.+...++..++.++.|++.||+|+|+.. .+..+..++........++.+.++++.++.|++
T Consensus       229 ~~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~g~~  307 (390)
T PRK03545        229 EPFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRHPSGFLL-IAIALLLVCLLLLLPAANSEWHLSVLSIFWGIA  307 (390)
T ss_pred             HHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHH-HHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHH
Confidence            3445566899999999999999999999999999999999988654 444444444433334456667778888899998


Q ss_pred             cccchHhHHHHHHhcCCCCchhhHHHHHHhhhhhHHHHHHhhHHHhhhccCchHHHHHHHHHHHHHHHHHHhhcc
Q 014481          217 EGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFSGFKILQE  291 (423)
Q Consensus       217 ~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw~~~~~~~~~~~~~~~~~~~~~~~  291 (423)
                      .+...+.....+.+..| ++|++++|+++....+|..+||+++|.+.++.|++..|++.+++.++.++......+
T Consensus       308 ~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~G~~~~G~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  381 (390)
T PRK03545        308 IMCIGLAMQVKVLKLAP-DATDVAMALFSGIFNIGIGAGALLGNQVSLHLGLSSIGYVGAALALAALVWSILIFR  381 (390)
T ss_pred             HhcchHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHcc
Confidence            87777777788888776 689999999999999999999999999999999999999998888776665555443

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.55  E-value=2.4e-13  Score=128.51  Aligned_cols=162  Identities=16%  Similarity=0.011  Sum_probs=136.7

Q ss_pred             HHHHHHHhhhhhhhhhHHHhhhhhCCCcchhhHHHHHHHHHHHhhhhhhhhHhhHhcCchHHHHHHHHHHHHHHHHHHhh
Q 014481          121 LAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLA  200 (423)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~  200 (423)
                      +..++.......+....|.+.+++|.++.++|++.++..++..++.++.+++.||+|+|+.+.++.++.++..++. ...
T Consensus       212 ~~~~l~~~~~~~~~~~~~~~l~~~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~-~~~  290 (382)
T TIGR00902       212 AAVCLIQGAHAAYYGFSAIYWQAAGISASATGLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAII-GAI  290 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHH-HhH
Confidence            3334444445555556677667899999999999999999999999999999999999999999999988888776 457


Q ss_pred             hHHHHHHHHHHHHHhhcccchHhHHHHHHhcCCCCchhhHHHHHH-hhhhhHHHHHHhhHHHhhhccCchHHHHHHHHHH
Q 014481          201 GFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVF-GGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLG  279 (423)
Q Consensus       201 ~~~~~~~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~-~~~~~g~~~g~~~~~~l~~~~gw~~~~~~~~~~~  279 (423)
                      ++.+.+++.+++.|+..+...+....++.+. |+++|+++.++++ ...++|..+|+.++|++.++.|+ ..|++.+++.
T Consensus       291 ~~~~~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~g~-~~~~~~~~~~  368 (382)
T TIGR00902       291 EAFPLIFLLQILHCGTFAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPTLGA-GTFVFMAIIA  368 (382)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHH
Confidence            7778888999999999999999999999998 8889999999986 57889999999999999999986 6677777777


Q ss_pred             HHHHHH
Q 014481          280 IAWFSG  285 (423)
Q Consensus       280 ~~~~~~  285 (423)
                      ++.+++
T Consensus       369 ~~~~~~  374 (382)
T TIGR00902       369 AAAFFL  374 (382)
T ss_pred             HHHHHH
Confidence            655444

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>PRK12382 putative transporter; Provisional

Probab=99.55  E-value=4.3e-13  Score=127.35  Aligned_cols=155  Identities=20%  Similarity=0.210  Sum_probs=127.6

Q ss_pred             hhhhhHHHhhhhhCCCcchhhHHHHHHHHHHHhhhhhhhhHhhHhcCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 014481          132 NLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSRV  211 (423)
Q Consensus       132 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (423)
                      ......+.+.++.|.+  ..++..+.+.++..+++++.|++.||+|+|+.+.++..+.+++.++. ...++.+.++++.+
T Consensus       234 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  310 (392)
T PRK12382        234 VIGTFVSLYFASKGWA--MAGFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLL-WLAPTAWVALAGAA  310 (392)
T ss_pred             HHHHHHHHHHHhcCCc--hhHHHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHH-HHcccHHHHHHHHH
Confidence            3444455555566654  35666777888889999999999999999999999888877777665 34556677778889


Q ss_pred             HHHhhcccchHhHHHHHHhcCCCCchhhHHHHHHhhhhhHHHHHHhhHHHhhhccCchHHHHHHHHHHHHHHHHHHhh
Q 014481          212 LVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFSGFKIL  289 (423)
Q Consensus       212 l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw~~~~~~~~~~~~~~~~~~~~~  289 (423)
                      +.|++.+...+...+.+.+.+|+++|++++|+++....+|..+||.+.+.+.++.||++.|++.+++.++..+..++.
T Consensus       311 l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~  388 (392)
T PRK12382        311 LTGAGCSLIFPALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATSFGYPSVFLAGAISAVLGIIVTILS  388 (392)
T ss_pred             HHHHHHHhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHhh
Confidence            999998888888888899999999999999999999999999999999999999999999999988877765555443

>PRK03699 putative transporter; Provisional

Probab=99.54  E-value=4e-13  Score=127.59  Aligned_cols=171  Identities=13%  Similarity=0.182  Sum_probs=133.3

Q ss_pred             HHHHHHHhhhhhhhhhHHHhh-hhhCCCcchhhHHHHHHHHHHHhhhhhhhhHhhHhcCchHHHHHHHHHHHHHHHHHHh
Q 014481          121 LAFVICNMDKVNLSVAIIPMS-HRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLL  199 (423)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~  199 (423)
                      +..++............|.+. +++|++..+.+++.+.+.++..++.++.|+++||+++|+.+.....+.++...+. ..
T Consensus       212 ~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~-~~  290 (394)
T PRK03699        212 IAALLYILAQLTFISWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFFDLQRILTVLAGLALVLMYLF-VN  290 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHH-HH
Confidence            333333344445556677655 6789999999999999999999999999999999999999988777666655444 34


Q ss_pred             hhHHHHHHHHHHHHHhhcccchHhHHHHHHhcCCCCchhhHHHHHHhhhhhHHHHHHhhHHHhhhccCchHHHHHHHHHH
Q 014481          200 AGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLG  279 (423)
Q Consensus       200 ~~~~~~~~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw~~~~~~~~~~~  279 (423)
                      .++.+.+.+..++.|++.+..++...++..+..+ +++++..+.......+|..++|.+.|.+.+..||+..+++.+++.
T Consensus       291 ~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~i~p~~~G~l~~~~g~~~~~~~~~~~~  369 (394)
T PRK03699        291 TDDPSHLLYAILGLGFFSSAIYTTIITLGSQQTK-VASPKLVNFILTCGTIGTMLTFVVTSPIVAHFGLQAALLTANGLY  369 (394)
T ss_pred             cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-CCCHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCchhhhhhhHHHH
Confidence            4555556667788888888788887778787776 567788899889999999999999999999999999999988887


Q ss_pred             HHHHHHHHhhccCC
Q 014481          280 IAWFSGFKILQEGE  293 (423)
Q Consensus       280 ~~~~~~~~~~~~~~  293 (423)
                      ++..+....+++..
T Consensus       370 ~~~~~~~~~~~~~~  383 (394)
T PRK03699        370 AVVFVMCILLGFVS  383 (394)
T ss_pred             HHHHHHHHHHHHHH
Confidence            77765555555433

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.53  E-value=4.4e-13  Score=127.06  Aligned_cols=168  Identities=14%  Similarity=0.081  Sum_probs=120.2

Q ss_pred             HHHHHHHHHHhhhhhhhhhHHHh-hhhhCCCcchhhHHHHHHHHHHHhhhhhhhhHhhHhcCchH--HHHH------HHH
Q 014481          118 TTSLAFVICNMDKVNLSVAIIPM-SHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKV--LQTG------VLI  188 (423)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~--~~~~------~~~  188 (423)
                      ...+..++............|.+ .+++|.+..+.+++.+...++..++.++.|++.||+|||+.  ....      .++
T Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (399)
T TIGR00893       219 GLALGQFLVNIGLGFFLTWFPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARKTAIIAGLV  298 (399)
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHH
Confidence            34444445555555566666664 56689999999999999999999999999999999999961  1111      111


Q ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHhhcccchHhHHHHHHhcCCCCchhhHHHHHHhhhhhHHHHHHhhHHHhhhccC-
Q 014481          189 WSLATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLG-  267 (423)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g-  267 (423)
                      ..+..... ...++.+..+...++.+++.+ ..+...+++.|.+|+++|++++|+.+....+|..++|.+.+.+.+..| 
T Consensus       299 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i~g~l~~~~g~  376 (399)
T TIGR00893       299 LSLLMFAT-NYVNIPYAALALVALGFFGLG-AGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVIGAIAATTGS  376 (399)
T ss_pred             HHHHHHHh-ccchhHHHHHHHHHHHHhchh-hhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhHHhhhhccCCCc
Confidence            11111111 112233333333444444444 788899999999999999999999999999999999999999999988 


Q ss_pred             chHHHHHHHHHHHHHHHHHH
Q 014481          268 WESVFYIFGLLGIAWFSGFK  287 (423)
Q Consensus       268 w~~~~~~~~~~~~~~~~~~~  287 (423)
                      |++.|++.+++.++..+..+
T Consensus       377 ~~~~~~~~~~~~~~~~~~~~  396 (399)
T TIGR00893       377 FAGALMVVAALALIGALSYL  396 (399)
T ss_pred             hhHHHHHHHHHHHHHHHHHH
Confidence            99999988888776655443

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.53  E-value=6.8e-13  Score=125.48  Aligned_cols=153  Identities=16%  Similarity=0.152  Sum_probs=125.1

Q ss_pred             hhhhHHHhhhhhCCCcchhhHHHHHHHHHHHhhhhhhhhHhhHhcCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 014481          133 LSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSRVL  212 (423)
Q Consensus       133 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  212 (423)
                      ...++|.+.++.|.+..+.++..+...++..+++++.|++.||+|+|+++..+..+.+++.+..  . .. ...+.+.++
T Consensus       219 ~~~~lp~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~--~-~~-~~~~~~~~l  294 (381)
T PRK03633        219 LYGLMPLYLNHQGMSDASIGFWMALLVSAGILGQWPIGRLADRFGRLLVLRVQVFVVILGSIAM--L-SQ-AAMAPALFI  294 (381)
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHHHH--h-hh-HHHHHHHHH
Confidence            3345677777789999999999999999999999999999999999999988877777665443  1 22 334456677


Q ss_pred             HHhhcccchHhHHHHHHhcCCCCchhhHHHHHHhhhhhHHHHHHhhHHHhhhccCchHHHHHHHHHHHHHHHHHHhh
Q 014481          213 VGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFSGFKIL  289 (423)
Q Consensus       213 ~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw~~~~~~~~~~~~~~~~~~~~~  289 (423)
                      .|++.....|...+.+.|..|+++++.+.+.+....++|..+||.++|++.++.||++.|.+.+.+.++..+..+..
T Consensus       295 ~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~  371 (381)
T PRK03633        295 LGAAGFTLYPVAMAWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLMQNYSDNLLFIMIASVSFIYLLMLLRK  371 (381)
T ss_pred             HHHHHHhHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHhc
Confidence            78877777899999999999888888888888899999999999999999999999999999888877665444443

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=99.51  E-value=9.1e-13  Score=120.61  Aligned_cols=176  Identities=17%  Similarity=0.140  Sum_probs=144.9

Q ss_pred             HHHHHHHHHHHHHHhhhhhhhhhHHHhhhhhCCCcchhhHHHHHHHHHHHhhhhhhhhHhhHhcCchHHHHHHHHHHHHH
Q 014481          114 KLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLAT  193 (423)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~  193 (423)
                      .+...+....+........+...-|.+++..|++.+.++++...+.++..+|..+.|++.|| +.|+.+.....+.++..
T Consensus       212 ~v~~~l~~t~l~~~g~F~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~~~l~~~~~l~a~~~  290 (394)
T COG2814         212 GVLLGLLATFLFMTGHFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR-GPRRALIAALLLLALAL  290 (394)
T ss_pred             hHHHHHHHHHHHHcchhhhHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc-cchhHHHHHHHHHHHHH
Confidence            44444444444444445566666777888899999999999999999999999999999999 99999999988888888


Q ss_pred             HHHHHhhhHHHHHHHHHHHHHhhcccchHhHHHHHHhcCCCCchhhHHHHHHhhhhhHHHHHHhhHHHhhhccCchHHHH
Q 014481          194 ALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFY  273 (423)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw~~~~~  273 (423)
                      +.+.+..++.+..++.-++.|+..+.........+++ .-++.++.+.+++....++|..+|..++|.+.+++|+....+
T Consensus       291 l~l~~~~~~~~~~~~~~~~wg~a~~~~~~~~~~~~a~-~~p~~~~~a~sl~~aa~nlgia~GA~lGG~v~~~~g~~~~~~  369 (394)
T COG2814         291 LALTFTGASPALALALLFLWGFAFSPALQGLQTRLAR-LAPDAADLAGSLNVAAFNLGIALGAALGGLVLDALGYAATGW  369 (394)
T ss_pred             HHHHHhcchHHHHHHHHHHHHHHhhhhhhHHHHHhcc-cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHH
Confidence            7776777777777777788888887777777777777 445899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhcc
Q 014481          274 IFGLLGIAWFSGFKILQE  291 (423)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~  291 (423)
                      +.+++.++.++..+...+
T Consensus       370 ~~a~l~~~a~~~~~~~~~  387 (394)
T COG2814         370 VGAALLLLALLLALLSAR  387 (394)
T ss_pred             HHHHHHHHHHHHHHHHHh
Confidence            999998887666655443

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=99.51  E-value=2.1e-12  Score=122.49  Aligned_cols=162  Identities=14%  Similarity=0.032  Sum_probs=123.9

Q ss_pred             HHhhhhhhhhhHHHhhhhhCCCcchhhHHHHHHHHHHHhhhhhhhhHhhHhcCchHHHHHHHHHHHHHHHHHHhhhHHHH
Q 014481          126 CNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPG  205 (423)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (423)
                      ............|.+.+++|.+..+.|...+.+.++..++.++.|++.||+|||+.+.++..+..++.++......+...
T Consensus       217 ~~~~~~~~~~~lp~~l~~~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  296 (393)
T PRK09705        217 INGGYASLIAWLPAFYIEIGASAQYSGSLLALMTLGQAAGALLMPAMARHQDRRKLLMLALVLQLVGFCGFIWLPLQLPV  296 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHcCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHccchHHH
Confidence            33444455556677666789999999999999999999999999999999999999988877776666544323333222


Q ss_pred             HHHHHHHHHhhcccchHhHHHHHHhcCC-CCchhhHHHHHHhhhhhHHHHHHhhHHHhhhccC-chHHHHHHHHHHHHHH
Q 014481          206 LVLSRVLVGIGEGVSPSAATDLIARSIP-LEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLG-WESVFYIFGLLGIAWF  283 (423)
Q Consensus       206 ~~~~~~l~G~~~~~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g-w~~~~~~~~~~~~~~~  283 (423)
                      +  ..++.|++.+...+.......+..+ ++++++.+|+.+....++..+||.+.|++.+..| |...|.+.++..++..
T Consensus       297 ~--~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~  374 (393)
T PRK09705        297 L--WAMVCGLGLGGAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSISGNYLMDWAFHALCVVGLM  374 (393)
T ss_pred             H--HHHHHHHhccchHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHH
Confidence            2  2345688888888877777777775 5689999999999999999999999999999876 7777777776666554


Q ss_pred             HHHHhh
Q 014481          284 SGFKIL  289 (423)
Q Consensus       284 ~~~~~~  289 (423)
                      +....+
T Consensus       375 ~~~~~~  380 (393)
T PRK09705        375 IITLRF  380 (393)
T ss_pred             HHHHHh
Confidence            443333

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.51  E-value=5.5e-13  Score=130.73  Aligned_cols=149  Identities=16%  Similarity=0.148  Sum_probs=115.8

Q ss_pred             hhhhHHHhh-hhhCCCcchhhHHHHHHHHHHHhhhhhhhhHhhHhcCchHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHH
Q 014481          133 LSVAIIPMS-HRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLL-AGFMPGLVLSR  210 (423)
Q Consensus       133 ~~~~~~~~~-~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  210 (423)
                      ....+|.+. +++|.+..+.+++.+...++..++.++.|+++||+|||++++++.++.++..++.... ..+.+.+.+..
T Consensus       294 ~~~~lp~~l~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  373 (496)
T PRK03893        294 IQALLPTYLKTDLGYDPHTVANVLFFSGFGAAVGCCVGGFLGDWLGTRKAYVCSLLISQLLIIPVFAIGGANVWVLGLLL  373 (496)
T ss_pred             HHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhccccHHHHHHHHH
Confidence            445667765 5899999999999999999999999999999999999999988876665554433222 23333444444


Q ss_pred             HHHHhhcccchHhHHHHHHhcCCCCchhhHHHHHHhhhhhHHHHHHhhHHHhhhccCchHHHHHHHHHHHH
Q 014481          211 VLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIA  281 (423)
Q Consensus       211 ~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw~~~~~~~~~~~~~  281 (423)
                      ++.++......+....++.+.+|+++|++++|+++....+|..+||+++|.+.+..||+..+.+.+....+
T Consensus       374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~lgp~l~g~l~~~~g~~~~~~~~~~~~~~  444 (496)
T PRK03893        374 FFQQMLGQGISGLLPKLIGGYFDTEQRAAGLGFTYNVGALGGALAPILGALIAQRLDLGTALASLSFSLTF  444 (496)
T ss_pred             HHHHHHhcccchhhHHHHHhhCCHHHhhcccchhhhhhhHHHHHHHHHHHHHhccCChHHHHHHHHHHHHH
Confidence            54444333445667788999999999999999999999999999999999999999999888766554433

>PRK11010 ampG muropeptide transporter; Validated

Probab=99.50  E-value=5.1e-12  Score=123.12  Aligned_cols=156  Identities=12%  Similarity=0.088  Sum_probs=120.5

Q ss_pred             HHHhhhhhCCCcchhhHHHH-HHHHHHHhhhhhhhhHhhHhcCchHHHHHHHHHHHHHHHHH---HhhhHHHHHHHHHHH
Q 014481          137 IIPMSHRFGWNSSVAGLVQS-SFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLP---LLAGFMPGLVLSRVL  212 (423)
Q Consensus       137 ~~~~~~~~~~s~~~~~~~~~-~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l  212 (423)
                      .|.+.+++|.+..+++++.. ...++..++.+++|+++||+|+|+.+.++.++.++..+++.   ...++.+.+.+..++
T Consensus       246 ~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l~~l~~~~l~~~~~~~~~l~~~~~l  325 (491)
T PRK11010        246 TTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLFRALMIFGILQGVSNAGYWLLSITDKNLYSMGAAVFF  325 (491)
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence            34456678999999999974 66689999999999999999999988776665454433221   112343444445566


Q ss_pred             HHhhcccchHhHHHHHHhcCCCCchhhHHHHHHhhhhhHHHHHHhhHHHhhhccCchHHHHHHHHHHHHHHHHHHhhccC
Q 014481          213 VGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFSGFKILQEG  292 (423)
Q Consensus       213 ~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~  292 (423)
                      ..++.+...+...++..+..+++.+++.+++.+...++|..+++.++|.+.+..||+..|.+.++++++.++....++++
T Consensus       326 ~~~~~g~~~~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~~~G~~~~f~~~~~~~l~~l~~~~~~~~~  405 (491)
T PRK11010        326 ENLCGGMGTAAFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVEAHGWPTFYLFSVAAAVPGLLLLLVCRQT  405 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            55555555666788888999989999999999999999999999999999999999999999888888877666666543

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=99.50  E-value=4.4e-13  Score=129.63  Aligned_cols=176  Identities=14%  Similarity=0.041  Sum_probs=118.6

Q ss_pred             HHHHHHHHHhhhhhhhhhHHHhh-hhhCCCcchhhHHHHHHHHHHHhhhhhhhhHhhHh--cCchHHH-HHHHHHHHHHH
Q 014481          119 TSLAFVICNMDKVNLSVAIIPMS-HRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIF--GGRKVLQ-TGVLIWSLATA  194 (423)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~--G~r~~~~-~~~~~~~~~~~  194 (423)
                      ..+..++.....+.....+|.+. ++.|.+..+.+++...+.++..++.++.|+++||+  +||+... ....+..++.+
T Consensus       258 ~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~~~~~~~~l~~~~~~  337 (452)
T PRK11273        258 IAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATI  337 (452)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHH
Confidence            33444344444445556777755 45789989999999999999999999999999999  5554332 22223233322


Q ss_pred             HHHHh-hhHHHHHHHHHHHHHhhcccchHhHHHHHHhcCCCCchhhHHHHHHhhhhhHHH-HHHhhHHHhhhccCchHHH
Q 014481          195 LLPLL-AGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSV-AGLLLAPPIIENLGWESVF  272 (423)
Q Consensus       195 ~~~~~-~~~~~~~~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~-~g~~~~~~l~~~~gw~~~~  272 (423)
                      +.... ..+.+..+++.++.|.+..........+..|.+|+++||+++|+.+....+|+. +||.+.|.+.+..||+..|
T Consensus       338 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~g~l~~~~g~~~~f  417 (452)
T PRK11273        338 VYWLNPAGNPTVDMACMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGF  417 (452)
T ss_pred             HHHHhcccChHHHHHHHHHHHHHHHhHHHHHHHHHHHHcChhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhcchHHH
Confidence            22111 223334444555555543333333445677999999999999999988888765 4899999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhccCCc
Q 014481          273 YIFGLLGIAWFSGFKILQEGET  294 (423)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~  294 (423)
                      ++.++.+++.++....+...++
T Consensus       418 ~~~~~~~~~~~~~~~~~~~~~~  439 (452)
T PRK11273        418 MVMIGGSILAVILLIVVMIGEK  439 (452)
T ss_pred             HHHHHHHHHHHHHHHHHhcccc
Confidence            9988887777666555544443

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=99.50  E-value=7.3e-13  Score=129.00  Aligned_cols=177  Identities=16%  Similarity=0.102  Sum_probs=131.8

Q ss_pred             HHHHHHHHHHHHHHHhhhhhhhhhHHHhhhhhCCCcchhhHHHHHHHHHHHhhhhhhhhHhhHhcCchHHHHHHHHHHHH
Q 014481          113 YKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLA  192 (423)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~  192 (423)
                      +..+....+..+.............|.+.+++|.+..+.++......++..++.++.|+++||+|||+.+.++.++.+++
T Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~  362 (481)
T TIGR00879       283 RRLFLGVVLQWFQQFTGINAIMYYSPTIFENAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAIC  362 (481)
T ss_pred             HHHHHHHHHHHHHHHhCCeehHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence            34444444455544444555566678888889999988899999999999999999999999999999999988777776


Q ss_pred             HHHHHHh----hh------HHHHHHHHHHHHHhhcccchHhHHHHHHhcCCCCchhhHHHHHHhhhhhHHHHHHhhHHHh
Q 014481          193 TALLPLL----AG------FMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPI  262 (423)
Q Consensus       193 ~~~~~~~----~~------~~~~~~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l  262 (423)
                      .+++...    .+      +...+....++.+.......+....++.|.+|+++|++++++.+...++|.+++|.+.+.+
T Consensus       363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~~~  442 (481)
T TIGR00879       363 LFVLGILGASFVTGSSKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTM  442 (481)
T ss_pred             HHHHHHHhhcccCCcccchhHHHHHHHHHHHHHHHccccCeehhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6555311    11      2222222333333222333466677889999999999999999999999999999999999


Q ss_pred             hhccCchHHHHHHHHHHHHHHHHHHhh
Q 014481          263 IENLGWESVFYIFGLLGIAWFSGFKIL  289 (423)
Q Consensus       263 ~~~~gw~~~~~~~~~~~~~~~~~~~~~  289 (423)
                      .+..+|++.|++.++++++.++..+++
T Consensus       443 ~~~~~~~~~f~~~~~~~~~~~i~~~~~  469 (481)
T TIGR00879       443 LESIGVGGVFIFFGGLNVLGLIFVYFF  469 (481)
T ss_pred             HHhcCccceehhHHHHHHHHHHHHhee
Confidence            998899999999888877766555443

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>TIGR00897 2A0118 polyol permease family

Probab=99.50  E-value=1.6e-12  Score=123.82  Aligned_cols=167  Identities=14%  Similarity=0.121  Sum_probs=126.6

Q ss_pred             HHHHHHHhhhhhhhhhHHHhhhhhCCCcchhhHHHHHHHHHHHhhhhhhhhHhhHhcCchHHH-HHHHHHHHHHHHHHHh
Q 014481          121 LAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQ-TGVLIWSLATALLPLL  199 (423)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~-~~~~~~~~~~~~~~~~  199 (423)
                      +..++............|.+.+++|.+..+.+++.+...++..++.++.|+++||+|||+.+. .+.+..++..+.+...
T Consensus       229 ~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~l~~~~~~~~l~~~  308 (402)
T TIGR00897       229 MVRIINTIGLFGFAVFLPMFVAELGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMNTVRWFGGVGCGIFTLALYYI  308 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHH
Confidence            334444444555566778877889999999999999999999999999999999999988764 3333333332222111


Q ss_pred             ----hhHHHHHHHHHHHHHhhcccchHhHHHHHHhcCCCCchhhHHHHHHhhhhhHHHHHHhhHHHhhhccCchHHHHHH
Q 014481          200 ----AGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIF  275 (423)
Q Consensus       200 ----~~~~~~~~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw~~~~~~~  275 (423)
                          .++.+.++++.++.|++.+...+ ....+.+..| ++|++++|+.+....+|..++|.+++.+.+..||...+++.
T Consensus       309 ~~~~~~~~~~~~~~~~~~G~~~~~~~~-~~~~~~~~~~-~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~g~~~~~~~~  386 (402)
T TIGR00897       309 PQHFGHSFAVALIIAIALGIFLAGYVP-LAAVFPTLAP-KHKGAAMSVLNLSAGLSAFLAPAIAVLFIGFFGAIGVVWIF  386 (402)
T ss_pred             HHccCCcHHHHHHHHHHHHHHHHHHHH-HHHHHHhhCc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHH
Confidence                23456667788888888776544 4556667655 68999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhh
Q 014481          276 GLLGIAWFSGFKIL  289 (423)
Q Consensus       276 ~~~~~~~~~~~~~~  289 (423)
                      +++.++..+...++
T Consensus       387 a~~~~i~~~~~~~~  400 (402)
T TIGR00897       387 AALYVVSAFLTAFI  400 (402)
T ss_pred             HHHHHHHHHHHHHh
Confidence            98887766665554

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.50  E-value=2.1e-13  Score=129.35  Aligned_cols=162  Identities=15%  Similarity=0.136  Sum_probs=123.1

Q ss_pred             HHHHHHHHHhhhhhhhhhHHHhh-hhhCCCcchhhHHHHHHHHHHHhhhhhhhhHhhHhcCchHHHHHHHHHHHHH-HHH
Q 014481          119 TSLAFVICNMDKVNLSVAIIPMS-HRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLAT-ALL  196 (423)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~-~~~  196 (423)
                      .....+.............|.+. +++|.+..+.++..+...++..++.++.|+++||+|||+.+..+..+..+.. .+.
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~  303 (394)
T TIGR00883       224 GLGLVIATTTTFYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLL  303 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHH
Confidence            33344444444555556666654 6789999999999999999999999999999999999998876554443332 122


Q ss_pred             HHh--hhHHHHHHHHHHHHHhhcccchHhHHHHHHhcCCCCchhhHHHH-HHhhhhhHHHHHHhhHHHhhhccC-chHHH
Q 014481          197 PLL--AGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSF-VFGGLSFGSVAGLLLAPPIIENLG-WESVF  272 (423)
Q Consensus       197 ~~~--~~~~~~~~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~-~~~~~~~g~~~g~~~~~~l~~~~g-w~~~~  272 (423)
                      ...  .++.+.+++..++.|++.+...+...+++.|.+|+++|++++++ ++....+|..++|.++|.+.++.| |++.+
T Consensus       304 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~g~~~~~~  383 (394)
T TIGR00883       304 MALLDSGSFTLFFFLVLGLALIGGMYTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAMTGDWYAIG  383 (394)
T ss_pred             HHHhcCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHHHHcCcchhHH
Confidence            112  24556666777888888888889999999999999999999998 456677899999999999999888 88877


Q ss_pred             HHHHHHHH
Q 014481          273 YIFGLLGI  280 (423)
Q Consensus       273 ~~~~~~~~  280 (423)
                      +..++..+
T Consensus       384 ~~~~~~~l  391 (394)
T TIGR00883       384 YYLAALAL  391 (394)
T ss_pred             HHHHHHHH
Confidence            76655443

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.49  E-value=1.6e-13  Score=132.65  Aligned_cols=162  Identities=18%  Similarity=0.172  Sum_probs=126.9

Q ss_pred             HHHHHHhhhhhhhhhHHHhhhhhCCCcchhhHHHHHHHHHHHhhhhhhhhHhhHh--cCchHHHHH--HHHHHHHHHHHH
Q 014481          122 AFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIF--GGRKVLQTG--VLIWSLATALLP  197 (423)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~--G~r~~~~~~--~~~~~~~~~~~~  197 (423)
                      ..++..+........++.+.+++|.+..+.+++.++..++..++.++.|++.||.  ++|+...++  .++.+++.+++ 
T Consensus       249 ~~~l~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~-  327 (455)
T TIGR00892       249 GNVIMFLGFFAPIIFLVPYAKDKGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLC-  327 (455)
T ss_pred             HHHHHHHHccchHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHH-
Confidence            3334444444455566777778899999999999999999999999999999974  344434333  23333333333 


Q ss_pred             HhhhHHHHHHHHHHHHHhhcccchHhHHHHHHhcCCCCchhhHHHHHHhhhhhHHHHHHhhHHHhhhcc-CchHHHHHHH
Q 014481          198 LLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENL-GWESVFYIFG  276 (423)
Q Consensus       198 ~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~-gw~~~~~~~~  276 (423)
                      ...++++.+++.+++.|++.+...+...+++.+.+|++++++++|+++....+|..+||.++|.+.+.. +|++.|++.+
T Consensus       328 ~~~~~~~~~~i~~~~~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~f~~~~  407 (455)
T TIGR00892       328 ALAGDYTGLVIYCIFFGLSFGSVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDATKNYKYIFYASG  407 (455)
T ss_pred             HHhchHHHHHHHHHHHHHHhchHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeehhcCCcchHHHHhh
Confidence            345667788889999999999999999999999999999999999999999999999999999999877 5999999988


Q ss_pred             HHHHHHHH
Q 014481          277 LLGIAWFS  284 (423)
Q Consensus       277 ~~~~~~~~  284 (423)
                      ++.++..+
T Consensus       408 ~~~li~~~  415 (455)
T TIGR00892       408 SIVVSAGL  415 (455)
T ss_pred             HHHHHHHH
Confidence            87665543

>PRK11663 regulatory protein UhpC; Provisional

Probab=99.49  E-value=1.2e-12  Score=125.86  Aligned_cols=172  Identities=14%  Similarity=0.018  Sum_probs=116.3

Q ss_pred             HHHHHHHHHhhhhhhhhhHHHhh-hhhCCCcchhhHHHHHHHHHHHhhhhhhhhHhhHh--cCchHH-HHHHHHHHHHHH
Q 014481          119 TSLAFVICNMDKVNLSVAIIPMS-HRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIF--GGRKVL-QTGVLIWSLATA  194 (423)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~--G~r~~~-~~~~~~~~~~~~  194 (423)
                      +.+..+............+|.+. +++|++..+.++..+.+.++..++.++.|+++||+  ++|+.. ....+...+...
T Consensus       248 ~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~~~~~r~~~~~~~~~~~~~~~~  327 (434)
T PRK11663        248 LSFSYVLVYVVRAAINDWGNLYMSETLGVDLVTANSAVSMFELGGFIGALVAGWGSDKLFNGNRGPMNLIFAAGILLSVG  327 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCccHHHHHHHHHHHHHHH
Confidence            33334444444445555666655 67899999999999999999999999999999999  333332 221111111111


Q ss_pred             HHH-HhhhHHHHHHHHHHHHHhhcccchHhHHHHHHhcCCCCchhhHHHHHHhhhhhHHHHHHhhHHHhhhccCchHHHH
Q 014481          195 LLP-LLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFY  273 (423)
Q Consensus       195 ~~~-~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw~~~~~  273 (423)
                      ... ....+.....+..+..|++...........+.|.+|+++|++++|+.+....+|..++|.+.+++.+..||+..|+
T Consensus       328 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~p~~~g~l~~~~g~~~~f~  407 (434)
T PRK11663        328 SLWLMPFASYVMQAACFFTIGFFVFGPQMLIGMAAAECSHKEAAGAATGFVGLFAYLGAALSGYPLAKVLEIWHWTGFFV  407 (434)
T ss_pred             HHHHcccccHHHHHHHHHHHHHHHhhHHHHHHHHHHhcccHhhHHhHHHHHHHHHHHHHHHhcccHHHHHHhcccHHHHH
Confidence            111 1122223333344445544332233344567899998999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhc
Q 014481          274 IFGLLGIAWFSGFKILQ  290 (423)
Q Consensus       274 ~~~~~~~~~~~~~~~~~  290 (423)
                      +.++++++..+......
T Consensus       408 ~~~~~~~~~~~~~~~~~  424 (434)
T PRK11663        408 VISIAAGISALLLLPFL  424 (434)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            99888877665554443

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.49  E-value=1.4e-12  Score=124.87  Aligned_cols=160  Identities=19%  Similarity=0.115  Sum_probs=131.2

Q ss_pred             hhhhHHHhhhh-hCCCcchhhHHHHHHHHHHHhhhhhhhhHhhHhcCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 014481          133 LSVAIIPMSHR-FGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSRV  211 (423)
Q Consensus       133 ~~~~~~~~~~~-~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (423)
                      .....|.+.++ +|.+..+.|++.+...++..++.++.+++.||.++++.+..+.++.+++.++. ...++.+..+++.+
T Consensus       242 ~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  320 (417)
T PRK10489        242 VRVLYPALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLF-GLMPMWILAVLCLA  320 (417)
T ss_pred             HHHhhHHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHH-HccchHHHHHHHHH
Confidence            34456666555 89999999999999999999999999999999888888888877777776555 35566667778888


Q ss_pred             HHHhhcccchHhHHHHHHhcCCCCchhhHHHHHHhhhhhHHHHHHhhHHHhhhccCchHHHHHHHHHHHHH-HHHHHhhc
Q 014481          212 LVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAW-FSGFKILQ  290 (423)
Q Consensus       212 l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw~~~~~~~~~~~~~~-~~~~~~~~  290 (423)
                      +.|++.+...+...+++.+..|++.||+++|+++....+|..+||.+.|.+.+..|++..+++.++..++. .+....++
T Consensus       321 ~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  400 (417)
T PRK10489        321 LFGYLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAMMTPVASASASGFGLLIIGVLLLLVLG  400 (417)
T ss_pred             HHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHhcc
Confidence            89998887777788899999998999999999999999999999999999999999998888877776554 44444445


Q ss_pred             cCC
Q 014481          291 EGE  293 (423)
Q Consensus       291 ~~~  293 (423)
                      +.+
T Consensus       401 ~~~  403 (417)
T PRK10489        401 ELR  403 (417)
T ss_pred             ccc
Confidence            443

>TIGR00891 2A0112 putative sialic acid transporter

Probab=99.48  E-value=4.3e-13  Score=127.80  Aligned_cols=142  Identities=11%  Similarity=0.116  Sum_probs=115.3

Q ss_pred             hhhhHHH-hhhhhCCCcchhhHHHHHHHHHHHhhhhhhhhHhhHhcCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 014481          133 LSVAIIP-MSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSRV  211 (423)
Q Consensus       133 ~~~~~~~-~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (423)
                      .....|. +.+++|.+..+.+++.+...++..++.++.|++.||+|||+.+.++.++.++..+......++.+.+.+..+
T Consensus       257 ~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  336 (405)
T TIGR00891       257 IQDLLPTYLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWLGRRKAYVCSLLAGQLLIIPVFAIGANVAVLGLGLF  336 (405)
T ss_pred             hhhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhhhHHHHHHHHHHHHHHHHhCCchHHHHHHHH
Confidence            3344454 556789999999999999999999999999999999999999988877654433333233445556666667


Q ss_pred             HHHhhcccchHhHHHHHHhcCCCCchhhHHHHHHhhhhhHHHHHHhhHHHhhhccC-chHHHHH
Q 014481          212 LVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLG-WESVFYI  274 (423)
Q Consensus       212 l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g-w~~~~~~  274 (423)
                      +.|++.+...+...+++.|.+|+++|++++|+.+....+|..++|+++|.+.++.| |+..+..
T Consensus       337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~~g~~~~~~~~  400 (405)
T TIGR00891       337 FQQMLVQGIWGILPKHLGEYFPTDQRAAGLGFTYQLGNLGGALAPIIGALLAQRLDEYGTALAS  400 (405)
T ss_pred             HHHHHHccchhhHHHHHhhhCCcchhHHHhhHHHHHHHHHHHHHHHHHHHHHHhccccchhHHh
Confidence            77777777778888999999999999999999999999999999999999999988 8776654

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=99.47  E-value=7e-12  Score=114.03  Aligned_cols=241  Identities=19%  Similarity=0.189  Sum_probs=172.2

Q ss_pred             hhhhhCCCcchhhHHHHHHHHHHHhhhhhhhhHhhHhc-----CchHHHHH-HHHHHHHHHHHH----Hhhh--------
Q 014481          140 MSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFG-----GRKVLQTG-VLIWSLATALLP----LLAG--------  201 (423)
Q Consensus       140 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G-----~r~~~~~~-~~~~~~~~~~~~----~~~~--------  201 (423)
                      +..|+++.....+.+.++..+... ..+.+|+.+|+.+     ||..+++. .++.+.+..+..    ....        
T Consensus         6 MIvEL~vpA~lv~~lval~~~~ap-~R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~~~~~~   84 (403)
T PF03209_consen    6 MIVELGVPAWLVALLVALHYLVAP-LRVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQQSSGP   84 (403)
T ss_pred             HHHHhccHHHHHHHHHHHHHHHHH-HHHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHcccccccccc
Confidence            566889988888888888777664 6899999999999     88777765 334333332221    1122        


Q ss_pred             HH-H--HHHHHHHHHHhhcccchHhHHHHHHhcCCCCchhhHHHHHHhhhhhHHHHHHhhHHHhhhccCchHH---HHHH
Q 014481          202 FM-P--GLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESV---FYIF  275 (423)
Q Consensus       202 ~~-~--~~~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw~~~---~~~~  275 (423)
                      .+ +  ...+...+.|+|.+...+...++++|..|+++|+++.++...+.-+|.+++..+.+.+.+.+...-.   +...
T Consensus        85 ~~~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~s~~rL~~v~~~~  164 (403)
T PF03209_consen   85 FWLGLALAALAFLLYGLGVHASGTSFLALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGRLLDPFSPERLIQVIQGV  164 (403)
T ss_pred             cHHHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHHHHH
Confidence            11 1  3345567889999999999999999999999999999999999999999999999999887653322   2223


Q ss_pred             HHHHHHHHHHHHhhccCCcCcCCCCCcchhhhhhhhhhhhhHHhhccccCCCcHHHhhhcHHHHHHHHHHHHHHHHHHHH
Q 014481          276 GLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTC  355 (423)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  355 (423)
                      +++.++..++..+-.|++........++++. ..                ...|+++..+|....+....++...+++.-
T Consensus       165 a~i~~~l~~ia~wg~E~r~~~~~~~~~~~~~-~f----------------~~a~~~~~~~~~a~~f~~fl~l~t~a~~~Q  227 (403)
T PF03209_consen  165 ALIALLLNLIALWGQEPRRSRRAAAAERPRP-PF----------------REAWRQVWASPQARRFFVFLFLGTLAFFMQ  227 (403)
T ss_pred             HHHHHHHHHHHHHhcccCCcccccCCCCCCc-cH----------------HHHHHHHHhCCChhHHHHHHHHHHHHHHhh
Confidence            3333332222333333332222211111100 00                012567788888888888888888888888


Q ss_pred             HhhhhHHHHHhhCCChhhHHHHHHHHHHHHHHHHHHHHHHhHH
Q 014481          356 LSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADN  398 (423)
Q Consensus       356 ~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr  398 (423)
                      ...+-+|--+.+|++..+...+....+.+..+|..+.|++..|
T Consensus       228 D~iLEPygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~  270 (403)
T PF03209_consen  228 DVILEPYGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSR  270 (403)
T ss_pred             HHHcCCchhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            8899999999999999999999999999999999999988774

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>PRK09952 shikimate transporter; Provisional

Probab=99.47  E-value=1.9e-12  Score=124.67  Aligned_cols=163  Identities=15%  Similarity=0.122  Sum_probs=117.8

Q ss_pred             hhhhhhhhHHH-hhhhhCCCcchhhHHHHHHHHHHHhhhhhhhhHhhHhcCchHHHHHHHHHHHHHHHHHH-h--hhHHH
Q 014481          129 DKVNLSVAIIP-MSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPL-L--AGFMP  204 (423)
Q Consensus       129 ~~~~~~~~~~~-~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~-~--~~~~~  204 (423)
                      ..+......|. +.+++|.+......+..+..+...++.++.|+++||+|||++++++.++..++.+.+.. .  .+..+
T Consensus       265 ~~~~~~~~~~~y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~  344 (438)
T PRK09952        265 TMYIVTAFALNYSTQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFMALEAQSIFW  344 (438)
T ss_pred             HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHcCChHH
Confidence            33344444554 45678888876666666677777888999999999999999998887665544332211 1  12334


Q ss_pred             HHHHHHHHHHhhcccchHhHHHHHHhcCCCCchhhHHHHHH-hhhhhHHHHHHhhHHHhhhcc--CchHHHHHHHHHHHH
Q 014481          205 GLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVF-GGLSFGSVAGLLLAPPIIENL--GWESVFYIFGLLGIA  281 (423)
Q Consensus       205 ~~~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~-~~~~~g~~~g~~~~~~l~~~~--gw~~~~~~~~~~~~~  281 (423)
                      .+++..++.+++.+...+...+++.|.+|.+.|+.+.++.+ .+..+|+.++|.+.+++.+..  +|...+.+.++..++
T Consensus       345 ~~~~~~~l~~~~~~~~~~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i  424 (438)
T PRK09952        345 IVFFSIMLANIAHDMVVCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLI  424 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHH
Confidence            44555667778877778888999999999999999999854 445589999999999998743  488888887777777


Q ss_pred             HHHHHHhhcc
Q 014481          282 WFSGFKILQE  291 (423)
Q Consensus       282 ~~~~~~~~~~  291 (423)
                      .++..+.+++
T Consensus       425 ~~v~~~~~~~  434 (438)
T PRK09952        425 SAMTALLMKD  434 (438)
T ss_pred             HHHHHHHccc
Confidence            7666666654

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=99.45  E-value=7.1e-12  Score=120.22  Aligned_cols=181  Identities=17%  Similarity=0.125  Sum_probs=146.3

Q ss_pred             HHHHHHHHHHHHHHHhhhhhhhhh-HHHhhhhhCCCcchhhHHHHHHHHHHHhhhhhhhhHhhHhcCc--hHHHHHHHHH
Q 014481          113 YKLIGTTSLAFVICNMDKVNLSVA-IIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGR--KVLQTGVLIW  189 (423)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r--~~~~~~~~~~  189 (423)
                      .+.+....+++++..-+.+.+... .....+++|++..+...+..+..+..++|++++|++.||+|.|  ++++++.+++
T Consensus       280 ~~~~~~fLia~~l~~dg~~ti~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~  359 (477)
T PF11700_consen  280 LRQLFLFLIAYFLYSDGVNTIISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILW  359 (477)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHH
Confidence            344555555655544444444433 4445668999999999999999999999999999999999999  8888887777


Q ss_pred             HHHHHHHHHh--------hhHHHHHHHHHHHHHhhcccchHhHHHHHHhcCCCCchhhHHHHHHhhhhhHHHHHHhhHHH
Q 014481          190 SLATALLPLL--------AGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPP  261 (423)
Q Consensus       190 ~~~~~~~~~~--------~~~~~~~~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~  261 (423)
                      .+..+.. .+        .++.+.+++..++.|+..|..++..-++.+++.|+++.+..+|++....-..+.+||++.+.
T Consensus       360 ~~i~~~g-~~G~~~~~~g~~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~  438 (477)
T PF11700_consen  360 IIIPLYG-LFGFWPSFFGLKSPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGL  438 (477)
T ss_pred             HHHHHHH-HHHhhhcccCcccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5544333 23        34557888999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhccC-chHHHHHHHHHHHHHHHHHHhhccCCc
Q 014481          262 IIENLG-WESVFYIFGLLGIAWFSGFKILQEGET  294 (423)
Q Consensus       262 l~~~~g-w~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (423)
                      +.+..| .|+.+....++.++.+++.+.++.++.
T Consensus       439 i~~~tg~~r~g~~~l~~lf~~gl~ll~~v~~~~g  472 (477)
T PF11700_consen  439 ITDATGSQRYGFLFLLVLFLIGLILLFFVDVEKG  472 (477)
T ss_pred             HHHHhCCchhHHHHHHHHHHHHHHHHhhccchhh
Confidence            998876 888888888888777777777665443

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=99.41  E-value=1.2e-11  Score=116.94  Aligned_cols=150  Identities=17%  Similarity=0.099  Sum_probs=122.1

Q ss_pred             hhhhhhHHHhhhhhCCCcchhhHHHHHHHHHHHhhhhhhhhHhhHhcCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 014481          131 VNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSR  210 (423)
Q Consensus       131 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (423)
                      .......|.+.++.|.+..+.|.+.+...++..+..++.|++.||+|+|+.+.++.++.++..++. ...++.+.+++..
T Consensus       222 ~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~  300 (382)
T PRK11128        222 AAYYGFSAIYWQAAGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLM-GSTTALPWLIVIQ  300 (382)
T ss_pred             HhHHHHHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH-HhhhhHHHHHHHH
Confidence            334444555557799999999999999999999999999999999999999999988888876665 4566778888899


Q ss_pred             HHHHhhcccchHhHHHHHHhcCCCCchhhHHHHHH-hhhhhHHHHHHhhHHHhhhccCchHHHHHHHHHHHHHH
Q 014481          211 VLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVF-GGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWF  283 (423)
Q Consensus       211 ~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~-~~~~~g~~~g~~~~~~l~~~~gw~~~~~~~~~~~~~~~  283 (423)
                      ++.|++.+...+....++.+. +++++++..++++ ....+|..+||.++|.+.+..|+ ..|+..+++.++.+
T Consensus       301 ~l~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~g~-~~~~~~~~~~~~~~  372 (382)
T PRK11128        301 ILHCGTFTVCHLAAMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQHLGA-GVFWVMALVALPAL  372 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHH
Confidence            999999988888888888886 5567788899876 55678889999999999999887 46666666655443

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=99.40  E-value=2.4e-11  Score=110.34  Aligned_cols=243  Identities=17%  Similarity=0.103  Sum_probs=175.2

Q ss_pred             cchhhHHHHHHHHHHHhhhhhhhhHhhHhcCchHHHHHHHHHHHHH-HHHHHhhh--HHHHHHHHHHHHHhhcccchHhH
Q 014481          148 SSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLAT-ALLPLLAG--FMPGLVLSRVLVGIGEGVSPSAA  224 (423)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~~l~G~~~~~~~~~~  224 (423)
                      .+..|...++..+..++.+|+.|.++|+.|+||..+-.+....+.. +++.+..+  +++..++..++..++........
T Consensus        57 ~a~~gy~~aia~llia~LapiLG~iaD~~g~Rk~~~~~f~~i~i~~~~~L~~i~~~s~~~~~l~~~il~~i~~~~s~Vfy  136 (438)
T COG2270          57 TAYWGYASAIAGLLIALLAPILGTIADYPGPRKKFFGFFTAIGIISTFLLWFIPPGSYLLLLLLFLILASIGFEFSNVFY  136 (438)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHhhhhhccCCCcchHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhcchhheeh
Confidence            3456888889999999999999999999999888776655555544 33334444  45566677788889888888999


Q ss_pred             HHHHHhcCCCCchhhHHHHHHhhhhhHHHHHHhhH--HHhh----------------hccCchHHHHHHHHHHHHHHHHH
Q 014481          225 TDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLA--PPII----------------ENLGWESVFYIFGLLGIAWFSGF  286 (423)
Q Consensus       225 ~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~--~~l~----------------~~~gw~~~~~~~~~~~~~~~~~~  286 (423)
                      .+++.+..++++-++..++-.....+|+.+.-++.  ..+.                +...-|.++.+.++..++..+-.
T Consensus       137 ds~L~~~~~k~~~~riS~lg~~~gylgs~i~li~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ri~~~l~A~W~li~~iPm  216 (438)
T COG2270         137 DSMLPRLTTKDNMGRISGLGWALGYLGSVILLIFVVLGFALGQQTGITIILLGLPPADGEDVRITGLLAALWWLLFALPM  216 (438)
T ss_pred             hhHhhhhcCccccCcccccccccccccchHHHHHHHHHHhcccccceeEEeeccCccccccchhHHHHHHHHHHHHHhHH
Confidence            99999999988888888876666677766654442  1111                22345777777777776665555


Q ss_pred             HhhccCCcCcCCCCCcchhhhhhhhhhhhhHHhhccccCCCcHHHhhhcHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHh
Q 014481          287 KILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEE  366 (423)
Q Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  366 (423)
                      +...++.+..... ...    .......+..         .+++++.+++.+..+.++.+++.=+..++...-..|....
T Consensus       217 ~~~v~~~~~~~~~-~~~----~l~~g~k~L~---------~t~k~i~~~~~i~~FLiA~~~~~DGv~til~~~~~fg~~~  282 (438)
T COG2270         217 ILNVHDAEKISSP-PPT----ALRNGFKELK---------STFKEIRGRKNLVLFLIARFFYIDGVNTILAMGGVFGAAD  282 (438)
T ss_pred             Hhccccccccccc-chH----HHHHHHHHHH---------HHHHHHhcccchHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence            4443333321100 000    0000111111         1257788888899999999999989999999999999988


Q ss_pred             hCCChhhHHHHHHHHHHHHHHHHHHHHHHhHHhhhcCC
Q 014481          367 LSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGV  404 (423)
Q Consensus       367 ~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~r~~  404 (423)
                      +|++..+..++.....+.+++|.++.|++.||++.|+.
T Consensus       283 ~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~v  320 (438)
T COG2270         283 LGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPV  320 (438)
T ss_pred             cCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcee
Confidence            99999999999999999999999999999999998843

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=99.40  E-value=1.2e-11  Score=121.32  Aligned_cols=173  Identities=12%  Similarity=0.058  Sum_probs=113.7

Q ss_pred             HHHHHHhhhhhhhhhHHHhhhhhCCCcchhhH------------HHHHHHHHHHhhhhhhhhHhhHhcCchHHHHHHHHH
Q 014481          122 AFVICNMDKVNLSVAIIPMSHRFGWNSSVAGL------------VQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIW  189 (423)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~------------~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~  189 (423)
                      ..+...+..+......|.+.++.|.+....+.            ...+..++..++.++.++++||+|||+.++++.++.
T Consensus       296 ~~~~~~~~~y~~~~~~p~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~gRR~~l~~~~~~~  375 (502)
T TIGR00887       296 SWFLLDIAFYGVNLNQKVILSAIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDIIGRKPIQLMGFFIL  375 (502)
T ss_pred             HHHHHHHHHHccccccHHHHHHHcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHH
Confidence            33333333334444577777788876543221            223344566678889999999999999998888777


Q ss_pred             HHHHHHHHHhhh---HHHHHHHHHHHHHhhcccchHhHHHHHHhcCCCCchhhHHHHHHhhhhhHHHHHHhhHHHhhhc-
Q 014481          190 SLATALLPLLAG---FMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIEN-  265 (423)
Q Consensus       190 ~~~~~~~~~~~~---~~~~~~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~-  265 (423)
                      +++.++......   ....+...-+...++..+..+....+.+|.+|.+.|++++|+.+....+|.+++|.+.+.+.+. 
T Consensus       376 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~  455 (502)
T TIGR00887       376 TVLFFVLGFAYNHLSTHGFLAIYVLAQFFANFGPNATTFIVPGEVFPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQHG  455 (502)
T ss_pred             HHHHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCCchhhhhhhccCchhHHHHHHHHHHHHhhhHHHHHHHHhhhhhccc
Confidence            766655433221   1111111111222222233456677789999999999999999999999999999999998874 


Q ss_pred             ---------cCchHHHHHHHHHHHHHHHHHHhhccCCc
Q 014481          266 ---------LGWESVFYIFGLLGIAWFSGFKILQEGET  294 (423)
Q Consensus       266 ---------~gw~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (423)
                               .++...|++.+++.++..+..+++||++.
T Consensus       456 ~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~lpEt~~  493 (502)
T TIGR00887       456 DPTKGYPTGIWMGHVLEIFALFMFLGILFTLLIPETKG  493 (502)
T ss_pred             cccccccccccchHHHHHHHHHHHHHHHHheEeccCCC
Confidence                     34566788888777766555566676543

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>PRK10504 putative transporter; Provisional

Probab=99.40  E-value=1.1e-11  Score=120.59  Aligned_cols=147  Identities=19%  Similarity=0.167  Sum_probs=116.8

Q ss_pred             HHHHHHhhhhhhhhhHHHhhh-hhCCCcchhhHHHHHHHHHHHhhhhhhhhHhhHhcCchHHHHHHHHHHHHHHHHHHhh
Q 014481          122 AFVICNMDKVNLSVAIIPMSH-RFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLA  200 (423)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~  200 (423)
                      ..++............|.+.+ .+|.++.+.++......++..++.++.|++.||+|+|+++..+.++.++...++....
T Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~  348 (471)
T PRK10504        269 GSFAGRIGSGMLPFMTPVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNRFGYRRVLVATTLGLALVSLLFMLVA  348 (471)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHhcc
Confidence            333334444455556676555 5899999999999999999999999999999999999999988887777765553332


Q ss_pred             --hHHHHHHHHHHHHHhhcccchHhHHHHHHhcCCCCchhhHHHHHHhhhhhHHHHHHhhHHHhhhccCc
Q 014481          201 --GFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGW  268 (423)
Q Consensus       201 --~~~~~~~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw  268 (423)
                        ++.+.+.+..++.|++.+...+....++.+..|+++++.++++.+....+|..+|+.+++.+.+..|+
T Consensus       349 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~ll~~~g~  418 (471)
T PRK10504        349 LLGWYYLLPFVLFLQGMVNSTRFSSMNTLTLKDLPDNLASSGNSLLSMIMQLSMSIGVTIAGLLLGLFGQ  418 (471)
T ss_pred             ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence              33333445667788888888888889999999999999999999999999999999999998876654

>PRK12307 putative sialic acid transporter; Provisional

Probab=99.39  E-value=2e-11  Score=117.34  Aligned_cols=143  Identities=13%  Similarity=0.072  Sum_probs=106.6

Q ss_pred             hhhhHHHhhhhhCCCcchhhHHHHHHHHHHHhhhhhhhhHhhHhcCchHHHHHHHHHHHHHHHHHHhhh-HHHHHHHHHH
Q 014481          133 LSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAG-FMPGLVLSRV  211 (423)
Q Consensus       133 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  211 (423)
                      ....+|.+.++.|.+..+.+.+.+...++..++.++.|++.||+|||+.+..+.++.++..+....... ....+.++.+
T Consensus       250 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  329 (426)
T PRK12307        250 IFGLLPTYLAGEGFDTGVVSNLMTAAAFGTVLGNIVWGLCADRIGLKKTFSIGLLMSFLFIFPLFRIPQDNYLLLGACLF  329 (426)
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHH
Confidence            445567766778999999999999999999999999999999999999998887776655544322222 2222222222


Q ss_pred             HHHhhcccchHhHHHHHHhcCCCCchhhHHHHHHhhhhhHHHHHHhhHHHhhhccCchHHHHHH
Q 014481          212 LVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIF  275 (423)
Q Consensus       212 l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw~~~~~~~  275 (423)
                      ..+++..+..+....++.|.+|+++|++++|+......+|..++|.+.+++.+..|+....++.
T Consensus       330 ~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~gp~~~g~l~~~~g~~~~~~~~  393 (426)
T PRK12307        330 GLMATNVGVGGLVPKFLYDYFPLEVRGLGTGLIYNLAATSGTFNSMAATWLGITMGLGAALTFI  393 (426)
T ss_pred             HHHHhcccHhHHHHHHHHHhCcHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHcccHHHHHHHH
Confidence            2223333334556678899999999999999999999999999999999999988866544433

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=99.39  E-value=1.3e-11  Score=120.39  Aligned_cols=161  Identities=11%  Similarity=-0.015  Sum_probs=118.7

Q ss_pred             hhhhhhhhHHHhhhhhCCCcchhhHHHHHHHHHHHhhhhhhhhHhhHhcCchHHHHHHHHHHHHHHHHHHhhh-H-H-HH
Q 014481          129 DKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAG-F-M-PG  205 (423)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~-~-~-~~  205 (423)
                      +........|.+.+++|.+....++......+...++.++.|+++||+|||+.++.+.++.+++.+++..... + . ..
T Consensus       286 ~~~~~~~~~p~i~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~~~~~~~~  365 (479)
T PRK10077        286 GINVVLYYAPEIFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIV  365 (479)
T ss_pred             ChhHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHhcCcccHH
Confidence            3344455668888889988877778878888899999999999999999999999999888887766532211 1 1 12


Q ss_pred             HHHHHHHHHhhccc-chHhHHHHHHhcCCCCchhhHHHHHHhhhhhHHHHHHhhHHHh------hhccCchHHHHHHHHH
Q 014481          206 LVLSRVLVGIGEGV-SPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPI------IENLGWESVFYIFGLL  278 (423)
Q Consensus       206 ~~~~~~l~G~~~~~-~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l------~~~~gw~~~~~~~~~~  278 (423)
                      ...+.++.+++.+. ..+....++.|.+|+++|++++|+......+|..+++.+.+.+      .+..+|++.|++.+++
T Consensus       366 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~  445 (479)
T PRK10077        366 ALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCM  445 (479)
T ss_pred             HHHHHHHHHHHHhccccchhHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhhccCccHHHHHHHH
Confidence            22333444444333 3366789999999999999999999999999998886665544      4567899999998887


Q ss_pred             HHHHHHHHHhh
Q 014481          279 GIAWFSGFKIL  289 (423)
Q Consensus       279 ~~~~~~~~~~~  289 (423)
                      .++.++..+++
T Consensus       446 ~~~~~~~~~~~  456 (479)
T PRK10077        446 GVLAALFMWKF  456 (479)
T ss_pred             HHHHHHHHHhc
Confidence            76665554443

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.39  E-value=3e-12  Score=120.11  Aligned_cols=133  Identities=23%  Similarity=0.328  Sum_probs=115.0

Q ss_pred             hhHHHhhhh-hCCCcchhhHHHHHHHHHHHhhhhhhhhHhhHhcCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 014481          135 VAIIPMSHR-FGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSRVLV  213 (423)
Q Consensus       135 ~~~~~~~~~-~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  213 (423)
                      ...|.+.++ +|.+..+.+++.+...++..++.++.+++.||+|||+.+..+.++.++..++.....++.+.++++.++.
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  311 (365)
T TIGR00900       232 ALFPYVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYFKRMALMTGAIFVIGLAILVVGLTPPNFPLFLVLWFAI  311 (365)
T ss_pred             HHhHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHH
Confidence            556666554 8999999999999999999999999999999999999998887777776655533332367788889999


Q ss_pred             HhhcccchHhHHHHHHhcCCCCchhhHHHHHHhhhhhHHHHHHhhHHHhhhccC
Q 014481          214 GIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLG  267 (423)
Q Consensus       214 G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g  267 (423)
                      |++.+...+...+++.|.+|+++|++++|+.+....+|..++|.++|.+.+..|
T Consensus       312 g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g~l~~~~g  365 (365)
T TIGR00900       312 GVGYGPINVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILAGPLADHLG  365 (365)
T ss_pred             HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            999999999999999999999999999999999999999999999999988654

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=99.39  E-value=6.6e-12  Score=118.38  Aligned_cols=154  Identities=15%  Similarity=0.128  Sum_probs=108.9

Q ss_pred             HHHHHHHHHhhhhhhhhhHHH-hhhhhCCCcchhhHHHHHHHHHHHhhhhhhhhHhhHhcCc-hHHH-HHHHHHHHHHHH
Q 014481          119 TSLAFVICNMDKVNLSVAIIP-MSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGR-KVLQ-TGVLIWSLATAL  195 (423)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r-~~~~-~~~~~~~~~~~~  195 (423)
                      +.+..+.............|. +.+.+|.+..+.++..+...++..++.++.|++.||.++| +... .......+..+.
T Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~  300 (379)
T TIGR00881       221 ISLGYVFVYVVRTGILDWSPLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMALIIVSLL  300 (379)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHH
Confidence            334444444444445555555 4567899999999999999999999999999999986433 3222 211111111111


Q ss_pred             HHHh--hhHHHHHHHHHHHHHhhcccchHhHHHHHHhcCCCCchhhHHHHHHhhhhhHHHHHHhhHHHhhhccCchHHH
Q 014481          196 LPLL--AGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVF  272 (423)
Q Consensus       196 ~~~~--~~~~~~~~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw~~~~  272 (423)
                      ....  ..+.+..+++.++.|+......+....++.|.+|+++|+++.|+++....+|..++|.+.|.+.+..||++.|
T Consensus       301 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f  379 (379)
T TIGR00881       301 VYWLNPAANPLMDLICLFALGFLVYGPQMLIGVIASELAPKKAAGTAAGFVGFFAYLGGILAGLPLGYLADGFGWAGAF  379 (379)
T ss_pred             HHhcCcchhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhhhhhhhhhhHHHHHHhhcccccC
Confidence            1111  2334455566677777666666666788999999999999999999999999999999999999999998754

>PRK15075 citrate-proton symporter; Provisional

Probab=99.38  E-value=9.9e-12  Score=119.62  Aligned_cols=145  Identities=14%  Similarity=0.076  Sum_probs=103.4

Q ss_pred             HHHhhhhhhhhhHHHhhh-hhCCCcchhhHHHHHHHHHHHhhhhhhhhHhhHhcCchHHHHHHHHHHHHHHH-HHH--hh
Q 014481          125 ICNMDKVNLSVAIIPMSH-RFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATAL-LPL--LA  200 (423)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~-~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~-~~~--~~  200 (423)
                      .............|.+.+ .+|.+..+.++....+.++..++.+++|+++||+|||++++++.++..+.... ...  ..
T Consensus       249 ~~~~~~~~~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~  328 (434)
T PRK15075        249 MTTVSFYLITVYTPTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALSDRIGRRPVLIAFTVLAILTAYPALSWLVAA  328 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            334444555666777554 48999999999998999999999999999999999999988765543322211 111  12


Q ss_pred             hHHHHHHHHHHHHHhhcccchHhHHHHHHhcCCCCchhhHHHHHHh-hhhhHHHHHHhhHHHhhhccCch
Q 014481          201 GFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFG-GLSFGSVAGLLLAPPIIENLGWE  269 (423)
Q Consensus       201 ~~~~~~~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~-~~~~g~~~g~~~~~~l~~~~gw~  269 (423)
                      ++...+.+..++.|++.+...+....++.|.+|++.|++++++... +..+++.++|.+.+++.+..|++
T Consensus       329 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i~~~~g~~  398 (434)
T PRK15075        329 PSFARMLAVELWLSFLYGSYNGAMVVALTEVMPAEVRTAGFSLAYSLATAIFGGFTPAISTWLIHVTGDK  398 (434)
T ss_pred             CchHHHHHHHHHHHHHHHHHHhhHHHHHHHHCCCCccchheeHHHHHHHHHHhhhHHHHHHHHHHhcCCc
Confidence            2323333444555666666666667889999999999999998644 44456788999999999988864

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=99.38  E-value=1.4e-11  Score=119.40  Aligned_cols=158  Identities=20%  Similarity=0.135  Sum_probs=135.7

Q ss_pred             hhhhhhHHHhh-hhhCCCcchhhHHHHHHHHHHHhhhhhhhhHhhHhcCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 014481          131 VNLSVAIIPMS-HRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLS  209 (423)
Q Consensus       131 ~~~~~~~~~~~-~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (423)
                      ..+...+|.+. +++|.++...|++.+++.+|..+++++.+++.+|+++++.+..+.++++++.+.+ .+.++.+..+++
T Consensus       235 ~a~~aLlPl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~l-al~~~~~~~~~~  313 (524)
T PF05977_consen  235 SAVWALLPLFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFALALLLL-ALSPSFWLALIA  313 (524)
T ss_pred             hHHHHhhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHH-hcchHHHHHHHH
Confidence            33445567654 5689999999999999999999999999999999999999999988888887776 566777888888


Q ss_pred             HHHHHhhcccchHhHHHHHHhcCCCCchhhHHHHHHhhhhhHHHHHHhhHHHhhhccCchHHHHHHHHHHHHHHHHHHhh
Q 014481          210 RVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFSGFKIL  289 (423)
Q Consensus       210 ~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw~~~~~~~~~~~~~~~~~~~~~  289 (423)
                      .++.|++.........+.+....|++.||++++++.+....+..+|.++.|.+.+..|.+.++.+.++..++..++....
T Consensus       314 l~l~G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~~~g~~~al~~a~~~lll~~~~~~~~  393 (524)
T PF05977_consen  314 LFLAGAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLADHFGVRTALLIAGAALLLSALIALRF  393 (524)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHh
Confidence            89999999888888899999999999999999999999999999999999999999999999888777665554444433

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=99.38  E-value=1.3e-11  Score=117.45  Aligned_cols=141  Identities=12%  Similarity=0.058  Sum_probs=117.0

Q ss_pred             CCCcchhhHHHHHHHHHHHhhhhhhhhHhhHhcCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcccchHhH
Q 014481          145 GWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAA  224 (423)
Q Consensus       145 ~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~  224 (423)
                      +.+....|.+.++..+...++.++.|++.||+|+|+.+.++.++.++...+.. ..++.+.++++.++.|++.+......
T Consensus       250 ~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~-~~~~~~~~~~~~~l~g~~~~~~~~~~  328 (396)
T TIGR00882       250 QQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSS-FATTALEVVILKMLHAFEVPFLLVGC  328 (396)
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHH-hcCChHHHHHHHHHHHHHHHHHHHHH
Confidence            45566778889998899999999999999999999999999888888776653 45666777888999999877666666


Q ss_pred             HHHHHhcCCCCchhhHHHH-HHhhhhhHHHHHHhhHHHhhhccCchHHHHHHHHHHHHHHHHH
Q 014481          225 TDLIARSIPLEERSRAVSF-VFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFSGF  286 (423)
Q Consensus       225 ~~~i~~~~~~~~r~~~~~~-~~~~~~~g~~~g~~~~~~l~~~~gw~~~~~~~~~~~~~~~~~~  286 (423)
                      ..++.+..+++.+++..+. ++....+|..+++.++|++.+..||+.+|.+.+++.++..+..
T Consensus       329 ~~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~~G~~~~f~~~~~~~~i~~~~~  391 (396)
T TIGR00882       329 FKYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYDSIGFQGAYLVLGCIVLLFTLIS  391 (396)
T ss_pred             HHHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHHhcccHHHHHHHHHHHHHHHHHH
Confidence            6777888887888887766 6788999999999999999999999999999888877665443

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=99.37  E-value=5.4e-11  Score=112.96  Aligned_cols=279  Identities=18%  Similarity=0.141  Sum_probs=182.9

Q ss_pred             HHHHHHHHHHHHHHHhhhhhhhhhHHHhhhhhCCCcc-hhhHHHHHH----HHHHHhhhhhhhhHhhHhcCchHHHHHHH
Q 014481          113 YKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSS-VAGLVQSSF----FWGYALSQLPGGWLAKIFGGRKVLQTGVL  187 (423)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-~~~~~~~~~----~~~~~~~~~~~g~l~dr~G~r~~~~~~~~  187 (423)
                      +......++-.+...+......+..+.....++.+.. ..+......    .+...+.++..|.++||+|||..+.+..+
T Consensus        21 ~~~~~~~fl~~fa~~l~~~~~~~~~~~~~ct~~~~~~~~~~~~~~~~~~~~~~~~~i~s~~iG~lSD~~grk~~L~~~~~  100 (463)
T KOG2816|consen   21 RHLEPLLFLYMFSWGLSSTVMTNVILYLACTFGDDYQLENGLLLGVKQVTAGLLTLISSPLIGALSDRYGRKVVLLLPLF  100 (463)
T ss_pred             hHHHHHHHHHHHHHHhcCcchhhhhhhhhcccccCccchhhhhhhHHHHhhHHHHHHHHhhhHHhhhhhhhhhhHHHHHH
Confidence            4555556666666666666666666666555543322 223333333    67888999999999999999999999988


Q ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHhhc--ccchHhHHHHHHhcCCCCchhhHHHHHHhhhhhHHHHHHhhHHHhhhc
Q 014481          188 IWSLATALLPLLAGFMPGLVLSRVLVGIGE--GVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIEN  265 (423)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~--~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~  265 (423)
                      ...+..++. .+.. +|.++    +.|+..  +.......++++|....++|...+|+.+.....+..++|.+++.+.+.
T Consensus       101 ~~~l~~~~~-~~~~-~~~~~----~~~l~g~~~~~~s~~~a~vadis~~~~R~~~~gll~~~~~~~~~~~p~~~~~~~~~  174 (463)
T KOG2816|consen  101 GTILPALCL-LFQG-YWFFL----LLGLSGGFSAIFSVGFAYVADISSEEERSSSIGLLSGTFGAGLVIGPALGGYLVKF  174 (463)
T ss_pred             HHHHhHHHH-HHHH-HHHhh----hcccccchhhhhhhhhhheeeccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHh
Confidence            877777655 3433 34333    444433  355677889999999999999999999999999999999999999999


Q ss_pred             cCchHHHHHHHHHHHHHHHH-HHhhccCCcCcCCCCCcchhhhhhhhhhhhhHHhhccccCCCcHHHhhhcHHHHHHHHH
Q 014481          266 LGWESVFYIFGLLGIAWFSG-FKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYA  344 (423)
Q Consensus       266 ~gw~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  344 (423)
                      .|.-.+|.+..+..++..+. .+++||+..++..+...... ....+.......+.   .  ......-.+|..+.+++.
T Consensus       175 ~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~~~~~~~~~~~~-~~~~~~~~~~~~~~---~--~~~~~~~~~r~~l~l~l~  248 (463)
T KOG2816|consen  175 LGIALVFLIAAASGILSLLYMLLFLPESLQEKERSDATLRE-LTPGSLDSSHVADA---F--QSLTKVGPDRLLLLLLLV  248 (463)
T ss_pred             cCchHHHHHHHHHHHHHHHHHhhccccccCccccccccccc-cCCCcccchhhhhh---h--hhhcccCCCccchHHHHH
Confidence            99999999988888776544 45556655443332100000 00000000000000   0  001112234555555555


Q ss_pred             HHHHHHHHHHHHh-hhhHHHHHhhCCChhhHHHHHHHHHHHHHHHHHHHH-HHhHHhhhcC
Q 014481          345 HFCGSWGHYTCLS-WLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAA-QFADNLIATG  403 (423)
Q Consensus       345 ~~~~~~~~~~~~~-~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g-~l~dr~~~r~  403 (423)
                      .++......+-.. .++.|+...+|+++.+.+.+.+.......++.++.. .+...++.|+
T Consensus       249 ~~~~~~~~~~~~~~~~~~yl~~~f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~l~~~~  309 (463)
T KOG2816|consen  249 AFLSSLPEAGGASDVLLLYLKAKFGWNKKEFSDLLSLVSILGIISQLLLLPLLSSILGEKR  309 (463)
T ss_pred             HHHHHHHHhcCceeEEEEEEeeecCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            5555444443333 557788888999999999998888888888888776 7777787774

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=99.37  E-value=1.1e-11  Score=119.34  Aligned_cols=163  Identities=13%  Similarity=0.019  Sum_probs=108.8

Q ss_pred             hhhhhhhhHHHhh-hhhCCCcchhhHHHHHHHHHHHhhhhhhhhHhhHhcCchHHHHHHHHHHH---HHHHHHHh-hhHH
Q 014481          129 DKVNLSVAIIPMS-HRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSL---ATALLPLL-AGFM  203 (423)
Q Consensus       129 ~~~~~~~~~~~~~-~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~---~~~~~~~~-~~~~  203 (423)
                      .........|.+. +..|.+..+.++...++.++..++.++.|+++||+++++....+..+..+   +.+.+... ..+.
T Consensus       266 ~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  345 (438)
T TIGR00712       266 LRYGVLDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFKGNRGATGVFFMTLVTIAVIVYWMNPAGNP  345 (438)
T ss_pred             HHHHHHHhHHHHHHHccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHHhcCCCch
Confidence            3344445666654 45799999999999999999999999999999999754433333222211   11111111 1222


Q ss_pred             HHHHHHHHHHHhhcccchHhHHHHHHhcCCCCchhhHHHHHHhhhhhH-HHHHHhhHHHhhhccCchHHHHHHHHHHHHH
Q 014481          204 PGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFG-SVAGLLLAPPIIENLGWESVFYIFGLLGIAW  282 (423)
Q Consensus       204 ~~~~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g-~~~g~~~~~~l~~~~gw~~~~~~~~~~~~~~  282 (423)
                      +...+..++.|++.............+.+|+++|++++|+.+....+| ..+||.+.|.+.+..||.+.|++.+...++.
T Consensus       346 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~gg~~~gp~l~G~l~~~~g~~~~~~~~~~~~~~~  425 (438)
T TIGR00712       346 LVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILA  425 (438)
T ss_pred             HHHHHHHHHHHHHHccHHHHHHHHHHHhcChhheeeehhhhchHHHhhhhhhcchhHHHHHHhccchHHHHHHHHHHHHH
Confidence            333344455555433322333456778999999999999998887776 5789999999999999999998887776665


Q ss_pred             HHHHH-hhcc
Q 014481          283 FSGFK-ILQE  291 (423)
Q Consensus       283 ~~~~~-~~~~  291 (423)
                      .+..+ .++|
T Consensus       426 ~~~~~~~~~~  435 (438)
T TIGR00712       426 VILLIVVMIG  435 (438)
T ss_pred             HHHHHHHHhh
Confidence            44444 4444

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=99.35  E-value=4.8e-11  Score=114.81  Aligned_cols=162  Identities=15%  Similarity=0.079  Sum_probs=103.8

Q ss_pred             hhhhhhhhhHHHh-hhhhCCCcchhhHHHHHHHHHHHhhhhhhhhHhhHhcCchHHHHHHHHHHHHHHHHHH-h--hhHH
Q 014481          128 MDKVNLSVAIIPM-SHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPL-L--AGFM  203 (423)
Q Consensus       128 ~~~~~~~~~~~~~-~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~-~--~~~~  203 (423)
                      ...+.....+|.+ .+++|.+..+.++..++..++..++.++.|+++||+|||+.++++.++.++....... .  .++.
T Consensus       257 ~~~~~~~~~lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~  336 (432)
T PRK10406        257 LCFYTFTTYMQKYLVNTAGMHANVASGIMTAALFVFMLIQPLIGALSDKIGRRTSMLCFGSLAALFTVPILSALQNVSSP  336 (432)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHcCCcH
Confidence            3344455566664 4668999889999888888888899999999999999999887766554333321111 1  1222


Q ss_pred             HHHHHHHHHHHhhcccchHhHHHHHHhcCCCCchhhHHHHHHhhhhh-HHHHHHhhHHHhhhccC-chHHHHHHHHHHHH
Q 014481          204 PGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSF-GSVAGLLLAPPIIENLG-WESVFYIFGLLGIA  281 (423)
Q Consensus       204 ~~~~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-g~~~g~~~~~~l~~~~g-w~~~~~~~~~~~~~  281 (423)
                      ...+..-.+.+++.+...+....+++|++|++.|++++|+.+...++ ++...|.+.+.+ +..| |...+++.++..++
T Consensus       337 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~fp~~~r~t~~g~~~~~g~~~~g~~~p~~~~~l-~~~g~~~~~~~~~~~~~~i  415 (432)
T PRK10406        337 YAAFGLVMCALLIVSFYTSISGILKAEMFPAQVRALGVGLSYAVANALFGGSAEYVALSL-KSIGMETAFFWYVTLMAVV  415 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCccchhhhHHHHHHHHHHHhHHHHHHHHH-HHhCCCcHHHHHHHHHHHH
Confidence            22222222222333333455677889999999999999998765553 344577777755 4445 55566666666666


Q ss_pred             HHHHHHhhc
Q 014481          282 WFSGFKILQ  290 (423)
Q Consensus       282 ~~~~~~~~~  290 (423)
                      .++..++++
T Consensus       416 ~~~~~~~l~  424 (432)
T PRK10406        416 AFLVSLMLH  424 (432)
T ss_pred             HHHHHHHhh
Confidence            555555543

>TIGR00895 2A0115 benzoate transport

Probab=99.34  E-value=1.4e-11  Score=116.93  Aligned_cols=143  Identities=20%  Similarity=0.191  Sum_probs=113.5

Q ss_pred             HHHHHHHHHhhhhhhhhhHHHhhhhhCCCcchhhHHHHHHHHHHHhhhhhhhhHhhHhcCchHHHHHHHHHHHHHHHHHH
Q 014481          119 TSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPL  198 (423)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~  198 (423)
                      +.+..++............|.+.+++|.+..+.++..+...++..++.++.|++.||+|+|+.+... .+.++...+...
T Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~  333 (398)
T TIGR00895       255 LWLLYFMLLVGVYFLTNWLPKLMVELGFSLSLAATGGALFNFGGVIGSIIFGWLADRLGPRVTALLL-LLGAVFAVLVGS  333 (398)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHH-HHHHHHHHHHHH
Confidence            3333344444455556667788888999999999999999999999999999999999999544443 333443333323


Q ss_pred             hhhHHHHHHHHHHHHHhhcccchHhHHHHHHhcCCCCchhhHHHHHHhhhhhHHHHHHhhHHHh
Q 014481          199 LAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPI  262 (423)
Q Consensus       199 ~~~~~~~~~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l  262 (423)
                      ...+.+.++++.++.|++.+...+...+++.+.+|+++|++++|+......+|..+||.++|.+
T Consensus       334 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~G~l  397 (398)
T TIGR00895       334 TLFSPTLLLLLGAIAGFFVNGGQSGLYALMALFYPTAIRATGVGWAIGIGRLGAIIGPILAGYL  397 (398)
T ss_pred             HhhCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHhc
Confidence            2445566778888999999999999999999999999999999999999999999999999876

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=99.34  E-value=3.9e-11  Score=113.84  Aligned_cols=151  Identities=15%  Similarity=0.046  Sum_probs=114.5

Q ss_pred             hhHHHhhhhhCCCcchhhHHHHHHHH-HHHhhhhhhhhHhhHhcCchHHHHHHHHHHHHHHHHHHhh-----hHHHHHHH
Q 014481          135 VAIIPMSHRFGWNSSVAGLVQSSFFW-GYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLA-----GFMPGLVL  208 (423)
Q Consensus       135 ~~~~~~~~~~~~s~~~~~~~~~~~~~-~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~  208 (423)
                      ...+.+.+|.|.+++++|++.....+ ...++.++.|++.||+|+|+.+.++.++.++..+......     .+...++.
T Consensus       229 ~~~~~~l~~~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  308 (390)
T TIGR02718       229 GLSKLYLVDAGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLAGSLALLWFAQAAFWLAPGIAVAWS  308 (390)
T ss_pred             HHhhHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcccCCcHHHHHH
Confidence            34556666789999999999888764 6667789999999999999999887766534333221111     12233344


Q ss_pred             HHHHHHhhcccchHhHHHHHHhcCCC-CchhhHHHHHHhhhhhHHHHHHhhHHHhhhccCchHHHHHHHHHHHHHHHH
Q 014481          209 SRVLVGIGEGVSPSAATDLIARSIPL-EERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFSG  285 (423)
Q Consensus       209 ~~~l~G~~~~~~~~~~~~~i~~~~~~-~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw~~~~~~~~~~~~~~~~~  285 (423)
                      ..++.+++.+...+...+.+.+..++ +++++.+++.+...++|..+||.++|.+.+..|++..|++.+++.++.++.
T Consensus       309 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~~G~~~~f~~~~~~~l~a~~~  386 (390)
T TIGR02718       309 CSAFGSLITGITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLTDRFGYAGGFLSGTVLAVLAILL  386 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHH
Confidence            45566666777777778887777776 789999999999999999999999999999999999999887776665443

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=99.34  E-value=2.7e-11  Score=115.38  Aligned_cols=151  Identities=14%  Similarity=0.149  Sum_probs=106.8

Q ss_pred             HHhhhhhCCCcchhhHHHHHHH-HHHHhhhhhhhhHhhHhcCchHHHHHHHHHHHHHHHH---HHhhhHHHHHHHHHH--
Q 014481          138 IPMSHRFGWNSSVAGLVQSSFF-WGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALL---PLLAGFMPGLVLSRV--  211 (423)
Q Consensus       138 ~~~~~~~~~s~~~~~~~~~~~~-~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~--  211 (423)
                      +.+.+++|+++.+++++.+... ++..++.+++|++.||+|+|+.+.++.++..+..+.+   ....++.+.++++-+  
T Consensus       234 ~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~  313 (402)
T PRK11902        234 TFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRLGLYRSLMLFGVLQAVSNLGYWVLAVTPKHLWTMALAIGIE  313 (402)
T ss_pred             HHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHH
Confidence            4466778999999999986654 5688999999999999999998877766655544322   122234455554443  


Q ss_pred             --HHHhhcccchHhHHHHHHhcCCCCchhhHHHHHHhhhhhHHHHHHhhHHHhhhccCchHHHHHHHHHHHHHHHHHHhh
Q 014481          212 --LVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFSGFKIL  289 (423)
Q Consensus       212 --l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw~~~~~~~~~~~~~~~~~~~~~  289 (423)
                        ..|++.+...+....++.+.+|.    +..++++...++|..+++.++|.+.+..||+..|.+.++++++.++.....
T Consensus       314 ~~~~g~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~G~l~~~~G~~~~f~~~~~~~~~~~~~~~~~  389 (402)
T PRK11902        314 NLCGGMGTAAFVALLMALCNRSFSA----TQYALLSALASVGRVYVGPTSGYLVEAYGWPGFYLMTVVIALPGLALLWLM  389 (402)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCCcH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHH
Confidence              44455555556666666666554    445666666678888777899999999999999999988887776665555


Q ss_pred             ccC
Q 014481          290 QEG  292 (423)
Q Consensus       290 ~~~  292 (423)
                      +.+
T Consensus       390 ~~~  392 (402)
T PRK11902        390 RGT  392 (402)
T ss_pred             hhh
Confidence            443

>PRK10054 putative transporter; Provisional

Probab=99.34  E-value=3.2e-11  Score=114.50  Aligned_cols=143  Identities=16%  Similarity=0.054  Sum_probs=116.0

Q ss_pred             hhhCCCcchhhHHHHHHHHHHHhhhhhhhhHhhHhcCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcccch
Q 014481          142 HRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSRVLVGIGEGVSP  221 (423)
Q Consensus       142 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~  221 (423)
                      ++.+.+....+++.+.+.+......++.|++.||+++|+.+.++.++.+++........++.+.++++.++.|+|.+...
T Consensus       237 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  316 (395)
T PRK10054        237 ADSDFAEKVVAVVLPVNAAMVVSLQYSVGRRLNAANIRPLMTAGTLCFVIGLVGFIFSGNSLLLWGMSAAVFTVGEIIYA  316 (395)
T ss_pred             cccchHHHHHHHHHHhhhhheeeehhHHHHHHccCCchhHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHH
Confidence            45566777788888888888888888999999999999999999888777776553334566667778889999988888


Q ss_pred             HhHHHHHHhcCCCCchhhHHHHHHhhhhhHHHHHHhhHHHhhhccCchHHHHHHHHHHHHHHHH
Q 014481          222 SAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFSG  285 (423)
Q Consensus       222 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw~~~~~~~~~~~~~~~~~  285 (423)
                      |.....+.+..|++.|+++++..+ ...+|..+||.++|.+.++.|....|++.+....+..+.
T Consensus       317 p~~~~~~~~~~p~~~~~~~~~~~~-~~~~G~~~Gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~  379 (395)
T PRK10054        317 PGEYMLIDHIAPPGMKASYFSAQS-LGWLGAAINPLVSGVILTTLPPWSLFVILALAIVAAWLL  379 (395)
T ss_pred             hhHHHHHHHhCCcccceehHhHHH-HHHHHHHHHHHHHHHHHHHcChhhHHHHHHHHHHHHHHH
Confidence            888889999999999999998765 566899999999999999999888888876665544333

>TIGR01272 gluP glucose/galactose transporter

Probab=99.34  E-value=8.8e-11  Score=107.29  Aligned_cols=159  Identities=11%  Similarity=0.062  Sum_probs=119.6

Q ss_pred             HHHHHHHHHHHHhhhhhhhhhHHHhhh---hhCCCcchhhHHHHHHHHHHHhhhhhhhhHhhHhcCchHHHHHHHHHHHH
Q 014481          116 IGTTSLAFVICNMDKVNLSVAIIPMSH---RFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLA  192 (423)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~  192 (423)
                      +....+..++............+.+.+   .+|+++.+.++..+.+..+..++.++.+++.||+|+|+.+.++.++..++
T Consensus       142 ~~l~~~~~f~yvg~e~~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~l~~~~  221 (310)
T TIGR01272       142 LVLGALGIFVYVGAEVSAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNAFLAVLL  221 (310)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHH
Confidence            333444555544445555555565543   36999999999999999999999999999999999999988887776666


Q ss_pred             HHHHHHhhhHHHHHHHHHHHHHhhcccchHhHHHHHHhcCCCCchhhHHHHHHhhhhhHHHHHHhhHHHhhhccCchHHH
Q 014481          193 TALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVF  272 (423)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw~~~~  272 (423)
                      .++. ...+. .....+-++.|++.+..+|...+...+..|+ +.+++.++. ....+|+.++|++.|.+.|..|.+..|
T Consensus       222 ~~l~-~~~~~-~~~~~~~~l~g~~~s~i~P~~~s~a~~~~~~-~~~~asai~-~~~~~Gg~i~P~l~G~lad~~g~~~a~  297 (310)
T TIGR01272       222 SIGA-ALTHG-YVAMWFVLALGLFNSIMFPTIFSLALNALGR-HTSQGSGIL-CLAIVGGAIVPLLQGSLADCLGIQLAF  297 (310)
T ss_pred             HHHH-HHcCC-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-hhhhhHHHH-HHHHhcchHHHHHHHHHHHhccchHHH
Confidence            5444 23333 2223455688999999999999999998874 456667775 567799999999999999999999888


Q ss_pred             HHHHHH
Q 014481          273 YIFGLL  278 (423)
Q Consensus       273 ~~~~~~  278 (423)
                      ++..+.
T Consensus       298 ~v~~~~  303 (310)
T TIGR01272       298 ALPVPC  303 (310)
T ss_pred             HHHHHH
Confidence            754444

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=99.33  E-value=2.3e-11  Score=117.23  Aligned_cols=145  Identities=15%  Similarity=0.182  Sum_probs=111.8

Q ss_pred             HHHHHhhhhhhhhhHHHhhhh-hCCCcchhhHHHHHHHHHHHhhhhhhhhHhhHhcCchHHHHHHHHHHHHHHHHHHhhh
Q 014481          123 FVICNMDKVNLSVAIIPMSHR-FGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAG  201 (423)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~-~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~  201 (423)
                      .++............+.+.++ ++ +....+++.++..++..++.+++++++||+|+|+.+.++.++.+++.++.....+
T Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~  309 (437)
T TIGR00792       231 YLFYNLAFNIKNGVQVYYFTYVLG-DPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFFFAGS  309 (437)
T ss_pred             HHHHHHHHHHHcchhheeEeeecC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcch
Confidence            333333333333334443333 34 5566788888889999999999999999999999999998887777666544334


Q ss_pred             HHHHHHHHHHHHHhhcccchHhHHHHHHhcCC-------CCchhhHHHHHHhhhhhHHHHHHhhHHHhhhccCc
Q 014481          202 FMPGLVLSRVLVGIGEGVSPSAATDLIARSIP-------LEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGW  268 (423)
Q Consensus       202 ~~~~~~~~~~l~G~~~~~~~~~~~~~i~~~~~-------~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw  268 (423)
                      +.+.+++..++.|++.+...+...++++|..+       ++.+|.++|+++....+|..+|+.+.|.+.+..||
T Consensus       310 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~~~G~  383 (437)
T TIGR00792       310 NLPLILVLIILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLILGIIGY  383 (437)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            55667777888999999888999999988865       45679999999999999999999999999887766

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.32  E-value=2.9e-11  Score=114.21  Aligned_cols=189  Identities=17%  Similarity=0.087  Sum_probs=141.2

Q ss_pred             CCCchhHHHHHHHHHHHHHHHhhhhhhhhhHHHhhhhhCCCcchhhHHHHHHHHHHHhhhhhhhhHhhHhcCchHHHHHH
Q 014481          107 KNIPQRYKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGV  186 (423)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~  186 (423)
                      ++...|+...+.+.+.......+.+....+...+.++-|++..++-++.....+...+..+++..+.||+|||+.++.+.
T Consensus       263 ~~~~lR~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~~gRRpLll~~~  342 (485)
T KOG0569|consen  263 KNPTLRRPLLIGIVVSFAQQFSGINAIFFYSTSIFKTAGFTPEEAQYANLGIGIVNLLSTLVSPFLIDRLGRRPLLLISL  342 (485)
T ss_pred             cCcchhHHHHHHHHHHHHHHhcCcceeHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHH
Confidence            33344555555666666666666667777777788999999999999999999999999999999999999999999998


Q ss_pred             HHHHHHHHHHHHhh---hHH--H---HHHHHHHHHHhhcc-cchHhHHHHHHhcCCCCchhhHHHHHHhhhhhHHHHHHh
Q 014481          187 LIWSLATALLPLLA---GFM--P---GLVLSRVLVGIGEG-VSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLL  257 (423)
Q Consensus       187 ~~~~~~~~~~~~~~---~~~--~---~~~~~~~l~G~~~~-~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~  257 (423)
                      .+..+..+++....   +..  |   ..+++.++..++.+ +..|...-+.+|.+|++.|..++++......++..+-..
T Consensus       343 ~~~~~~~~~~~~~~~l~~~~~~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~  422 (485)
T KOG0569|consen  343 SLMAVALLLMSIALFLSNSFGSWLSYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGF  422 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHH
Confidence            88888776553221   221  1   22344444443333 335788899999999999999999999999998888888


Q ss_pred             hHHHhhhccCchHHHHHHHHHHHHH-HHHHHhhccCCcCc
Q 014481          258 LAPPIIENLGWESVFYIFGLLGIAW-FSGFKILQEGETSN  296 (423)
Q Consensus       258 ~~~~l~~~~gw~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  296 (423)
                      .-..+.+..|- +.|+...+.+++. +..+..+||++.+.
T Consensus       423 ~fp~l~~~~g~-~~filF~i~~~~~~i~~~~~lPETkgr~  461 (485)
T KOG0569|consen  423 AFPPLQNVIGP-YVFILFVIPLAIFLIYLYRYLPETKGRT  461 (485)
T ss_pred             HHHHHHHHhcc-hhhHHHHHHHHHHHHHHHHhCcccCCCC
Confidence            88778777776 6677777776554 55666778877554

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=99.32  E-value=1.4e-10  Score=110.04  Aligned_cols=144  Identities=16%  Similarity=0.146  Sum_probs=114.5

Q ss_pred             HHHhhhhhCCCcchhhHHHHHHHHHHHhhhhhhhhHhhHhcCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhh
Q 014481          137 IIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSRVLVGIG  216 (423)
Q Consensus       137 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~  216 (423)
                      .|.+.+++|.+..+.+++...+.++..++.++.+++.||.+ |+.++.+..+..+...++....++.+.+.+..++.|++
T Consensus       240 ~p~~~~~~g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r~~-~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~G~~  318 (394)
T PRK10213        240 RPVYMNLAGFGVDGLTLVLLSFGIASFVGTSLSSFILKRSV-KLALAGAPLVLAVSALVLTLWGSDKIVATGVAIIWGLT  318 (394)
T ss_pred             HHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhccc-hhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence            46677788999999999999999999999999999999964 44444444443343333323455567777788999999


Q ss_pred             cccchHhHHHHHHhcCCCCchhhHHHHHHhhhhhHHHHHHhhHHHhhhccCchHHHHHHHHHHHHH
Q 014481          217 EGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAW  282 (423)
Q Consensus       217 ~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw~~~~~~~~~~~~~~  282 (423)
                      .+...+...+++.+..| ++++++.++.....++|..+|+.++|.+.+..|++..++..+++.++.
T Consensus       319 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~lg~~~G~~l~G~l~~~~g~~~~~~~~~~~~~~~  383 (394)
T PRK10213        319 FALVPVGWSTWITRSLA-DQAEKAGSIQVAVIQLANTCGAAIGGYALDNIGLTSPLMLSGTLMLLT  383 (394)
T ss_pred             HHhhhHHHHHHHHHHCc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhhHHHHHHHHHHHH
Confidence            98888888888888887 667788888888999999999999999999999998888877665444

>PRK10091 MFS transport protein AraJ; Provisional

Probab=99.32  E-value=1.4e-10  Score=109.69  Aligned_cols=148  Identities=17%  Similarity=0.118  Sum_probs=109.0

Q ss_pred             HHHhhhhhCCCcchhhHHHHHHHHHHHhhhhhhhhHhhHhcCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhh
Q 014481          137 IIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSRVLVGIG  216 (423)
Q Consensus       137 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~  216 (423)
                      .|.+.+.+|.++.+.+++.+...++..++.++.|++.||+|+|+.+.++..+.+++.++.....++.+..+++.++.+++
T Consensus       223 ~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g  302 (382)
T PRK10091        223 KPYMMFISGFSETSMTFIMMLVGLGMVLGNLLSGRLSGRYSPLRIAAVTDFIIVLALLMLFFFGGMKTASLIFAFICCAG  302 (382)
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHHheeccccCchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            34566668999999999999999999999999999999999999999888887777655534444445555666666666


Q ss_pred             cccchHhHHH-HHHhcCCCCchhhHHHHHHhhhhhHHHHHHhhHHHhhhc-cCchHHHHHHHHHHHHHHHHH
Q 014481          217 EGVSPSAATD-LIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIEN-LGWESVFYIFGLLGIAWFSGF  286 (423)
Q Consensus       217 ~~~~~~~~~~-~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~-~gw~~~~~~~~~~~~~~~~~~  286 (423)
                      .....+.... ...+..+++.++.+  ..+....+|..+||.++|++.+. .+|++.+++.+++.++.....
T Consensus       303 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~Gp~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~  372 (382)
T PRK10091        303 LFALSAPLQILLLQNAKGGELLGAA--GGQIAFNLGSAIGAYCGGMMLTLGLAYNYVALPAALLSFAAMSSL  372 (382)
T ss_pred             HHhhhHHHHHHHHHhCCcchHHHHH--HHHHHHHHHHHHHHHHhHHHHHcccCcchHHHHHHHHHHHHHHHH
Confidence            5444444343 33444444444444  34667889999999999999985 689999999887776554333

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=99.31  E-value=5.3e-11  Score=108.12  Aligned_cols=177  Identities=18%  Similarity=0.121  Sum_probs=138.4

Q ss_pred             HHHHHHHHHHHHHhhhhhhhhh-HHHhhhhhCCCcchhhHHHHHHHHHHHhhhhhhhhHhhHhcCchHHHHHHHHHHHHH
Q 014481          115 LIGTTSLAFVICNMDKVNLSVA-IIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLAT  193 (423)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~  193 (423)
                      .+....++.++..=+.+..... ...-..++|++..+..++.....+..+++++++|++.||+|.|+++.++.+++.+.+
T Consensus       253 ~i~~FLiA~~~~~DGv~til~~~~~fg~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~  332 (438)
T COG2270         253 NLVLFLIARFFYIDGVNTILAMGGVFGAADLGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAA  332 (438)
T ss_pred             chHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHH
Confidence            3444444444333222333333 333445999999999999999999999999999999999999999999999888877


Q ss_pred             HHHHHhhhHHHHHHHHHHHHHhhcccchHhHHHHHHhcCCCCchhhHHHHHHhhhhhHHHHHHhhHHHhhhccC-chHHH
Q 014481          194 ALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLG-WESVF  272 (423)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g-w~~~~  272 (423)
                      +.. .+...-..++++..+.|+..|..++..-++.++..|+++-++.+|+++.....++.+||.+.+.+.+..| -|..+
T Consensus       333 ~~~-~~~~~~~~f~i~gll~g~s~G~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg~~r~g~  411 (438)
T COG2270         333 LYL-IFLEGELDFWILGLLVGTSLGGAQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITGSSRAGV  411 (438)
T ss_pred             HHH-HHccccHHHHHHHHHHHHhcchHHHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhcchhhHH
Confidence            655 3333335677788999999999999999999999999999999999999999999999999999988755 66666


Q ss_pred             HHHHHHHHHHHHHHHhhccC
Q 014481          273 YIFGLLGIAWFSGFKILQEG  292 (423)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~  292 (423)
                      ....++.++.++..+.++.+
T Consensus       412 ~~i~vll~iGl~~L~~v~~~  431 (438)
T COG2270         412 LSIIVLLLIGLLLLLRVKVP  431 (438)
T ss_pred             HHHHHHHHhhHhhEEeecCC
Confidence            66666666666666666554

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=99.30  E-value=4.2e-11  Score=108.75  Aligned_cols=173  Identities=22%  Similarity=0.209  Sum_probs=135.0

Q ss_pred             HHHHHHHHHHHHhhhhhhhhhHHH-hhhhhCCCcchhhHHHHHHHHHHHhhhhhhhhHhhHhcCchHHHHHHHHHHHHHH
Q 014481          116 IGTTSLAFVICNMDKVNLSVAIIP-MSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATA  194 (423)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~  194 (423)
                      .+.+++.++..+...-.++..+|. +.++|+.++.+.|.....+.+...+..+.+|+++||+|.+|++.+....++++..
T Consensus       220 ~W~lsllY~~tFG~Fvgfs~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~rv~~~~f~~~~~~~~  299 (417)
T COG2223         220 TWLLSLLYFATFGGFVGFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRIGGRRVTLAVFVGMALAAA  299 (417)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhhccchhHHHHHHHHHHHHHH
Confidence            445666666666666677777777 6778999999999999999999999999999999999999999999888888887


Q ss_pred             HHHHhh------hHHHHHHHHHHHHHhhcccchHhHHHHHHhcCCCCchhhHHHHHHhhhhhHHHHHHhhHHHhhhccC-
Q 014481          195 LLPLLA------GFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLG-  267 (423)
Q Consensus       195 ~~~~~~------~~~~~~~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g-  267 (423)
                      +.....      .+....++..+..++..|........++..+++ ++-|.+.|+.....++|+..-|..-+...+..| 
T Consensus       300 ~l~~~~~~~~~~~~~~~~~~~~l~l~~~~G~GnGsvfk~Ip~if~-~~~G~v~G~vga~G~lGGf~lp~~~g~~~~~tg~  378 (417)
T COG2223         300 LLSLFLTGFGHGGSFVVFVAVFLALFVFAGLGNGSVFKMIPVIFP-KETGAVTGIVGAIGGLGGFFLPLAFGVSLDLTGS  378 (417)
T ss_pred             HHHccccccccCcchHHHHHHHHHHHHHhccCcchheeechHHHH-hhhhHHHHHHHHhccccccchhHHHHHHHHhccc
Confidence            765443      333333333333333334334445677778887 689999999999999999999999999988877 


Q ss_pred             chHHHHHHHHHHHHHHHHHHhh
Q 014481          268 WESVFYIFGLLGIAWFSGFKIL  289 (423)
Q Consensus       268 w~~~~~~~~~~~~~~~~~~~~~  289 (423)
                      +...|++.....+++.+..+..
T Consensus       379 ~~~~f~~~~~~~~~a~v~~~~~  400 (417)
T COG2223         379 YTGAFMLLLAFYLVALVLTWAL  400 (417)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            8999999888888776655544

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=99.30  E-value=2e-11  Score=118.66  Aligned_cols=156  Identities=17%  Similarity=0.130  Sum_probs=104.6

Q ss_pred             hhhhHHH-hhhhhCCCcchhhHHHHHHHHHHHhhhhhhhhHhhHhcCch-------HHHHHHHHHHHHHHHHHHhhhHHH
Q 014481          133 LSVAIIP-MSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRK-------VLQTGVLIWSLATALLPLLAGFMP  204 (423)
Q Consensus       133 ~~~~~~~-~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~-------~~~~~~~~~~~~~~~~~~~~~~~~  204 (423)
                      ....+|. +.+++|.+..+.+.+.+++.++..++.+++|+++||+|||+       .+.+..++.++..++. ...++.+
T Consensus       271 ~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~~~r~~~~~r~~~~~~~~~l~~i~~~~~-~~~~~~~  349 (476)
T PLN00028        271 MDNIIAEYFYDRFGLSLETAGAIAASFGLMNLFARPAGGYLSDVAARRFGMRGRLWALWIVQTLGGVFCIWL-GRANSLG  349 (476)
T ss_pred             HHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHh-cccchHH
Confidence            3334554 45678999999999999999999999999999999998752       2222223322322232 2333444


Q ss_pred             HHHHHHHHHHhhcccchHhHHHHHHhcCCCCchhhHHHHHHhhhhhHHHHHHhhHHHhhhccCchHHHHHHHHHHHHHHH
Q 014481          205 GLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFS  284 (423)
Q Consensus       205 ~~~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw~~~~~~~~~~~~~~~~  284 (423)
                      ..++..++.+++.+...+...+++.+..| +++|.+.|+.+.+..+|+.++|.+.+ ..+..+|+..|++.+++.++..+
T Consensus       350 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~g~lg~~i~~~l~~-~~~~~~y~~~f~~~~~~~~i~~~  427 (476)
T PLN00028        350 AAIVVMILFSIFVQAACGATFGIVPFVSR-RSLGVISGLTGAGGNVGAVLTQLLFF-TGSSYSTETGISLMGVMIIACTL  427 (476)
T ss_pred             HHHHHHHHHHHHHHHhhhhhcccCcccCh-hhchhhhhhhhccccHHHHHHHHHHH-hcCCccHhhHHHHHHHHHHHHHH
Confidence            44445555566554444445555666544 78999999988877777777776644 22234699999999888887777


Q ss_pred             HHHhhcc
Q 014481          285 GFKILQE  291 (423)
Q Consensus       285 ~~~~~~~  291 (423)
                      +.++++.
T Consensus       428 ~~~~~~~  434 (476)
T PLN00028        428 PVAFIHF  434 (476)
T ss_pred             HHHheec
Confidence            6666653

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=99.30  E-value=1.8e-10  Score=109.92  Aligned_cols=152  Identities=14%  Similarity=-0.009  Sum_probs=116.1

Q ss_pred             hhhhHHH-hhhhhCCCcchhhHHHHHHHHHHHhhhhhhhhHhhHhcCchHHHHHHHHHHHHHHHHHHhh----hHHHHHH
Q 014481          133 LSVAIIP-MSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLA----GFMPGLV  207 (423)
Q Consensus       133 ~~~~~~~-~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~----~~~~~~~  207 (423)
                      .....|. +.+++|.++.+.++......++..++.++.|++.||+|+|+.+.++.++.+++.++.....    .+++.++
T Consensus       234 ~~~~~p~~~~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  313 (406)
T PRK15402        234 WIALSPVILISGEQLSSYEYGLLQVPVFGALIAGNLTLARLTSRRPLRSLIRMGLWPMVAGLLLAALATVISSHAYLWLT  313 (406)
T ss_pred             HHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHH
Confidence            3334455 4567899999999988888888999999999999999999999888877766665553322    3445667


Q ss_pred             HHHHHHHhhcccchHhHHHHHHhcCCCCchhhHHHHHHhhhhhHHHHHHhhHHHhhhccCchHHHHHHHHHHHHHHHH
Q 014481          208 LSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFSG  285 (423)
Q Consensus       208 ~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw~~~~~~~~~~~~~~~~~  285 (423)
                      +..++.|++.+...+......... ++++||++.++++....+|..+|+.+++.+.+..++....+..++..++.++.
T Consensus       314 ~~~~~~g~g~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  390 (406)
T PRK15402        314 AGLSLYAFGIGLANAGLYRLTLFS-SDVSKGTVSAAMGMLSMLIFTVGIELSKHAYLGGGNGLFNLFNLANGLLWLLL  390 (406)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHhhh-ccccccHHHHHHHHHHHHHHHHHHHHHHhcccCCchHHHHHHHHHHHHHHHHH
Confidence            778889998887776665555443 44899999999999999999999999999998888776666655555544333

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=99.29  E-value=1.3e-09  Score=94.55  Aligned_cols=177  Identities=15%  Similarity=0.127  Sum_probs=129.7

Q ss_pred             HHHHHHHHHHHHHHHhhhhhhhhhHHHhhhhhCCCcchhhHHHHHHHHHHHhhhhhhhhHhhHhcCchHHHHHHHHHHHH
Q 014481          113 YKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLA  192 (423)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~  192 (423)
                      |..+....... ......+.++.+-|.+.+.+|+|.++...+.+...+|..+ .++.|.+.|++|++.++.+|.+...++
T Consensus         2 W~~l~a~~~v~-~~~Gt~Y~Fs~yS~~Lk~~l~~sq~~l~~l~~~~~~G~~~-G~~~G~l~d~~gp~~~l~iG~~~~~~G   79 (250)
T PF06813_consen    2 WLSLVASIWVQ-LCSGTTYTFSAYSPQLKSRLGYSQSQLNTLSTAGDIGSYF-GILAGLLYDRFGPWVVLLIGAVLGFVG   79 (250)
T ss_pred             hhhHHHHHHHH-HhcCcccchhhhhHHHHHHhCCCHHHHHHHHHHHHHHhhc-cHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence            44443333333 3334567788888999999999999999999999999986 588999999999999999999998888


Q ss_pred             HHHHHHhh------hHHHHHHHHHHHHHhhcccchHhHHHHHHhcCCCCchhhHHHHHHhhhhhHHHHHHhhHHHhhhcc
Q 014481          193 TALLPLLA------GFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENL  266 (423)
Q Consensus       193 ~~~~~~~~------~~~~~~~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~  266 (423)
                      ..+.....      .++|.+.+..++.|.+.+....+......+.|| ++||++.|+.-...++++.+-..+...+.+.-
T Consensus        80 Y~~~~l~~~~~i~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP-~~RG~vvgilk~~~GLSaai~t~i~~~~f~~~  158 (250)
T PF06813_consen   80 YGLLWLAVSGRIPSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFP-RSRGTVVGILKGFFGLSAAIFTQIYSAFFGDD  158 (250)
T ss_pred             HHHHHHHHhCccCccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCc-cccCceehhhhHHHHhHHHHHHHHHHHHcCCC
Confidence            87664332      345677777777778776666676677778888 68999999999999999888887777766552


Q ss_pred             CchHHHHHHHHH-HHHHHHHHHhhccCC
Q 014481          267 GWESVFYIFGLL-GIAWFSGFKILQEGE  293 (423)
Q Consensus       267 gw~~~~~~~~~~-~~~~~~~~~~~~~~~  293 (423)
                      .-. .+...+.. .++.++..++++..+
T Consensus       159 ~~~-fll~la~~~~~v~l~~~~~vr~~~  185 (250)
T PF06813_consen  159 PSS-FLLFLAVLPAVVCLVAMFFVRPVP  185 (250)
T ss_pred             hHH-HHHHHHHHHHHHHHHHhhheeccC
Confidence            233 33333333 344455555555443

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=99.28  E-value=7.4e-11  Score=113.95  Aligned_cols=176  Identities=20%  Similarity=0.185  Sum_probs=151.7

Q ss_pred             HHHHHHHHHHHHHHhhhhhhhhhHHHhhhhhCCCcchhhHHHHHHHHHHHhhhhhhhhHhhHhcC--chHHHHHHHHHHH
Q 014481          114 KLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGG--RKVLQTGVLIWSL  191 (423)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~--r~~~~~~~~~~~~  191 (423)
                      +.+..+.+...+..+...+....+|.+.++.+.+..+.+.+.++..+...++.++.|+++|+...  +....++.++.++
T Consensus       298 ~~fl~~~~~~~~~~~g~~~p~~~l~~~~~~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~~~ll~~gl  377 (509)
T KOG2504|consen  298 PKFLLLALSNLFAYLGFNVPFVYLPSYAKSLGLSSNDAAFLLSIIGVSDIIGRIILGLLADKPGIRALVLFLLTLLIAGL  377 (509)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCccccchHHHHHHHHHHHHH
Confidence            45566677777777888888888999999999999999999999999999999999999999884  4445556666666


Q ss_pred             HHHHHHHhhhHHHHHHHHHHHHHhhcccchHhHHHHHHhcCCCCchhhHHHHHHhhhhhHHHHHHhhHHHhhhccC-chH
Q 014481          192 ATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLG-WES  270 (423)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g-w~~  270 (423)
                      ..+.+ ...++++.++...++.|++.|.........+.|..+.++-..++|+...+.+++.++||+++|.+.+..| |..
T Consensus       378 ~~~~~-p~~~~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg~Y~~  456 (509)
T KOG2504|consen  378 ARLFL-PFATTYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGLLYDITGNYDH  456 (509)
T ss_pred             HHHHH-HHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccceeeeeccCCeee
Confidence            65444 4567778999999999999999988888899999999999999999999999999999999999998877 999


Q ss_pred             HHHHHHHHHHHHHHHHHhhc
Q 014481          271 VFYIFGLLGIAWFSGFKILQ  290 (423)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~  290 (423)
                      .|+..++..++.....++.+
T Consensus       457 ~f~~~g~~~~~s~~~~~~~~  476 (509)
T KOG2504|consen  457 AFYFCGLCFLLSAVLLLILR  476 (509)
T ss_pred             ehhhcChHHHHHHHHHHHhH
Confidence            99999999888877777666

>TIGR00898 2A0119 cation transport protein

Probab=99.27  E-value=1.1e-10  Score=114.90  Aligned_cols=149  Identities=17%  Similarity=-0.022  Sum_probs=113.7

Q ss_pred             hhhhCCCcchhhHHHHHHHHHHHhhhhhhhhHhhHhcCchHHHHHHHHHHHHHHHHHHhhhH-HHHHHHHHHHHHhhccc
Q 014481          141 SHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGF-MPGLVLSRVLVGIGEGV  219 (423)
Q Consensus       141 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~G~~~~~  219 (423)
                      ...++.+.   .+...+..+...++.++.+++.||+|||+.+.++.++.+++.++.....+. .+..++..++.+++.+.
T Consensus       350 ~~~~~~~~---~~~~~~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  426 (505)
T TIGR00898       350 LGNLGGNI---YLDLFISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVPVDLYFLRTALAVLGKFGITS  426 (505)
T ss_pred             ccccCCCh---HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHH
Confidence            33444443   233445566777888999999999999999999988888877666443332 23444555666777777


Q ss_pred             chHhHHHHHHhcCCCCchhhHHHHHHhhhhhHHHHHHhhHHHhhhccCchHHHHHHHHHHHHHHHHHHhhccCCc
Q 014481          220 SPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFSGFKILQEGET  294 (423)
Q Consensus       220 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (423)
                      ..+....+.+|.+|++.|++++|+.+....+|.+++|.+.+ + ...++..++++.++..++..+..+++||+..
T Consensus       427 ~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~ig~~i~p~i~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~lpet~~  499 (505)
T TIGR00898       427 AFQMVYLYTAELYPTVVRNLGVGVCSTMARVGSIISPFLVY-L-GEKWLFLPLVLFGGLALLAGILTLFLPETKG  499 (505)
T ss_pred             HHHHHHHHhcccccHHHHhhhHhHHHHHHHHHHHHHhHHHH-H-HHHHHhhHHHHHHHHHHHHHHHHHcCcCCCC
Confidence            77888999999999999999999999999999999999998 4 3446777888888888777777777776554

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=99.27  E-value=1.1e-10  Score=108.25  Aligned_cols=154  Identities=15%  Similarity=0.104  Sum_probs=127.8

Q ss_pred             HHHhhhhhCCCcchhhHHHHHHHHHHHhhhhhhhhHhhHhcCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhh
Q 014481          137 IIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSRVLVGIG  216 (423)
Q Consensus       137 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~  216 (423)
                      ...+-++-+.++...|.+.++..+.-++.-.+..++.+|+|.|+.++++.+++++=..++ .++++.+.+.+.+.+.|+-
T Consensus       247 ~~~~f~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~-~~~~~~~~i~~~klLH~~e  325 (412)
T PF01306_consen  247 FASFFQSAGQGNQMYGYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGS-GFATNPWVISLIKLLHALE  325 (412)
T ss_dssp             HHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH-HT--SHHHHHHHHHHHHHH
T ss_pred             HHHHhcccccChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHH-hhhcchHHHHHHHHHHHHH
Confidence            333333444556778999999999999999999999999999999999999988877666 5677778999999999999


Q ss_pred             cccchHhHHHHHHhcCCCCchhhHHHH-HHhhhhhHHHHHHhhHHHhhhccCchHHHHHHHHHHHHHHHHHHhhcc
Q 014481          217 EGVSPSAATDLIARSIPLEERSRAVSF-VFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFSGFKILQE  291 (423)
Q Consensus       217 ~~~~~~~~~~~i~~~~~~~~r~~~~~~-~~~~~~~g~~~g~~~~~~l~~~~gw~~~~~~~~~~~~~~~~~~~~~~~  291 (423)
                      .+........++++.+|++-.++...+ .+...++|..+.+.++|.+.|+.|.+.+|++.+.+.++..+...+..+
T Consensus       326 ~~l~lva~fkYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~G~~~tylimg~iv~~~~li~~f~l~  401 (412)
T PF01306_consen  326 FPLLLVAAFKYITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLYDRIGFQHTYLIMGLIVLPFTLISAFTLK  401 (412)
T ss_dssp             HHHHHHHHHHHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-
T ss_pred             HHHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHhhcCcHHHHHHHHHHHHHHHHHheeeec
Confidence            999999999999999998888888887 578999999999999999999999999999999888776555544433

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=99.27  E-value=8.4e-11  Score=114.32  Aligned_cols=176  Identities=16%  Similarity=0.046  Sum_probs=118.2

Q ss_pred             HHHHHHHHHHHHHhhhhhhhhhHHHh-hhhhCCCcchhhHHHHHHHHHHHhhhhhhhhHhhHhcCchHH--------HHH
Q 014481          115 LIGTTSLAFVICNMDKVNLSVAIIPM-SHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVL--------QTG  185 (423)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~--------~~~  185 (423)
                      .+..+.+..+............+|.+ .+.+|.+..+.++..++..++..++.++.|+++||+++|+..        ..+
T Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d~~~~~~~~~~~~~~~~~~~  341 (465)
T TIGR00894       262 PVWAIWFAIFGHFWLYTILPTYLPTFISWVLRVSGKENGLLSSLPYLFAWLCSIFAGYLADFLKSSKTLSLTAARKIFNG  341 (465)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Confidence            34455555566666666666677764 566899999999999999999999999999999998755321        111


Q ss_pred             HHHHHHHHHH--HHHhhhHHHHHHHHHHHHHhhcccchHhHHHHHHhcCCCCchhhHHHHHHhhhhhHHHHHHhhHHHhh
Q 014481          186 VLIWSLATAL--LPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPII  263 (423)
Q Consensus       186 ~~~~~~~~~~--~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~  263 (423)
                      ..+...+..+  ......+....+++-.+.+.+.+...+.......+..| +.+|.+.++.+....+|+.++|.+.+.+.
T Consensus       342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~l~~~i~p~l~g~~~  420 (465)
T TIGR00894       342 IGGLGPGIFAYALPYLSAAFYLTIIILTLANAVSSGPLAGVLINSLDLAP-RFLGFIKGITGLPGFIGGLIASTLAGNIL  420 (465)
T ss_pred             HHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhhhhhhhhhchhhcCh-hHHHHHHHHHHHHHHHHHHHHHHhhheee
Confidence            1111111111  11112233334444455555555555555555566666 58999999999999999999999999988


Q ss_pred             hcc---CchHHHHHHHHHHHHHHHHHHhhcc
Q 014481          264 ENL---GWESVFYIFGLLGIAWFSGFKILQE  291 (423)
Q Consensus       264 ~~~---gw~~~~~~~~~~~~~~~~~~~~~~~  291 (423)
                      +..   +|...|.+.++..++..+...++.+
T Consensus       421 ~~~~~~~~~~~f~~~~~~~~i~~i~~~~~~~  451 (465)
T TIGR00894       421 SQDSKNVWLIVFLIMAFVNILCVIFYLIFGS  451 (465)
T ss_pred             CCCCchHHHHHHHHHHHHHHHHHHHeeeeec
Confidence            653   3888888888877776665555443

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=99.26  E-value=3e-10  Score=106.97  Aligned_cols=171  Identities=19%  Similarity=0.256  Sum_probs=131.0

Q ss_pred             HHHHHHHHHhhhhhhhhhHHHhhhhhC-CCcchhhHHHHHHHHHHHhhhhhhhhHhhHhcCchHHHHHHHHHHHHHHHHH
Q 014481          119 TSLAFVICNMDKVNLSVAIIPMSHRFG-WNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLP  197 (423)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~  197 (423)
                      ..+..++.......+..+.+.+.++.| .+....+.+.++..+.-++.-...+++..|+|.|+++.++.+.+++=..+++
T Consensus       212 Fll~~~l~~~~~~~~~~f~~~yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~a  291 (400)
T PF03825_consen  212 FLLAAFLIGISHAAYYTFFSIYLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRWLLYA  291 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHH
Confidence            333444555556666666777777887 6777788888888888889999999999999999999999999888877776


Q ss_pred             HhhhHHHHHHHH----HHHHHhhcccchHhHHHHHHhcCCCCchhhHHHHHHh-hhhhHHHHHHhhHHHhhhccCchH--
Q 014481          198 LLAGFMPGLVLS----RVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFG-GLSFGSVAGLLLAPPIIENLGWES--  270 (423)
Q Consensus       198 ~~~~~~~~~~~~----~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~-~~~~g~~~g~~~~~~l~~~~gw~~--  270 (423)
                      ..+++.+..++.    ..+.|+..+..+.....++.+..|++.|+++.++++. ..++|..+|..++|++.+++|-+.  
T Consensus       292 ~~~~~~~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~~~~  371 (400)
T PF03825_consen  292 YFSDPWPFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFGARGMF  371 (400)
T ss_pred             HhcCCcHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchhhh
Confidence            554554443333    4568999999999999999999999999999999876 568999999999999999877543  


Q ss_pred             ----HHHHHHHHHHHHHHHHHhh
Q 014481          271 ----VFYIFGLLGIAWFSGFKIL  289 (423)
Q Consensus       271 ----~~~~~~~~~~~~~~~~~~~  289 (423)
                          .+.+.+.+.++..+++.++
T Consensus       372 ~~~~~~~v~a~~~~~~~~~f~~~  394 (400)
T PF03825_consen  372 DWSAVFLVFAVMALVILVLFVIL  394 (400)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhh
Confidence                3444444444444444333

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=99.26  E-value=9e-11  Score=112.07  Aligned_cols=161  Identities=14%  Similarity=0.094  Sum_probs=111.2

Q ss_pred             HHHHHHHHHHhhhhhhhhhHHHhhhhh--CCCcchhhHHHHHHHHHHHhhhhhhhhHhhHhcCchHH-HHHHHHHHHHHH
Q 014481          118 TTSLAFVICNMDKVNLSVAIIPMSHRF--GWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVL-QTGVLIWSLATA  194 (423)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~-~~~~~~~~~~~~  194 (423)
                      ...+.+++.......+...+|.+.+++  |.+..+.++..+...++..++.+++|+++||+++|+.. ....++.+++..
T Consensus       246 ~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr~~~r~~~~~~~~~~~~~~~~  325 (412)
T TIGR02332       246 LYTLAYFCLTNTLSAINIWTPQILQSFNQGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDRLKERKHHTALPYLFAAAGWL  325 (412)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHhHHHhhHHHHHHHHHHHHHHHHhcccCccHHHHHHHHHHHHHHHH
Confidence            344445555555666677788877764  56778889999999999999999999999999987753 334334333332


Q ss_pred             HHHHhhhHHHHHHHHHHHHHhhcccchHhHHHHHHhcCCCCchhhHHHHHHhhhhhHHHHHHhhHHHhhhccC-chHHHH
Q 014481          195 LLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLG-WESVFY  273 (423)
Q Consensus       195 ~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g-w~~~~~  273 (423)
                      +. ....+....+++-.+.+++.....+.......+.+|+++|++++|+.+....+|..++|.+.+.+.+..| |++.++
T Consensus       326 ~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~a~g~~~~~~~~g~~~~p~~~g~i~~~~g~~~~~~~  404 (412)
T TIGR02332       326 LA-SATDHNLIQLLGIIMASMGSFSAMAIFWTTPDQSISLQARAIAIAVINATGNIGSALSPFLIGILKDATGSFNSGLW  404 (412)
T ss_pred             HH-HhcCCHHHHHHHHHHHHHHhhhhhhHHHhhcccccchHHHHHHHHHHHHhhhhhhhhhhhhcccccccCCCCchhHH
Confidence            22 2222212222222233333333334444555677898999999999999999999999999999999875 999988


Q ss_pred             HHHHHH
Q 014481          274 IFGLLG  279 (423)
Q Consensus       274 ~~~~~~  279 (423)
                      +.++..
T Consensus       405 ~~~~~~  410 (412)
T TIGR02332       405 FVAALL  410 (412)
T ss_pred             HHHHHH
Confidence            776654

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=99.26  E-value=1.5e-10  Score=99.04  Aligned_cols=149  Identities=18%  Similarity=0.155  Sum_probs=114.5

Q ss_pred             HhhhhhCCCcchhhHHHHHHHHHHHhhhhhhhhHhhHhcCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcc
Q 014481          139 PMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSRVLVGIGEG  218 (423)
Q Consensus       139 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~  218 (423)
                      .+++.+|+|+...+.+.+......++.+++.|.++||+|++.+.+.+..+..+..=...+++  .+.=++...+.|+..+
T Consensus       290 fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~~a~~~tl~~H~~l~Ft--~lsPy~~m~~lGLsys  367 (459)
T KOG4686|consen  290 FFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKYGFNLWWVASACILTLLGHSGLFFT--FLSPYTSMTFLGLSYS  367 (459)
T ss_pred             HHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhhcceehhHHHHHHHHHHHhhhHHhh--hccHHHHHHHHhhhHH
Confidence            37889999999999999998889999999999999999999988887666555432221222  2333456677888888


Q ss_pred             cchHhHHHHHHhcCCCCchhhHHHHHHhhhhhHHHHHHhhHHHhhhccC---chHH-HHHHHHHHHHHHHHHHhh
Q 014481          219 VSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLG---WESV-FYIFGLLGIAWFSGFKIL  289 (423)
Q Consensus       219 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g---w~~~-~~~~~~~~~~~~~~~~~~  289 (423)
                      .........++...|+++.|++.|..+...++|..+.|+++|++.+.-|   |--. |.+.+.+++....+.+.+
T Consensus       368 llAcslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~g~y~~le~ffl~~~~~aL~svgil~~~  442 (459)
T KOG4686|consen  368 LLACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADGDGSYDNLEAFFLIIGLMALTSVGILFYL  442 (459)
T ss_pred             HHHHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeecCCCchhhHHHHHHHHHHHHHHHHHHHhhe
Confidence            7777788899999999999999999999999999999999999998755   3333 344444455544444444

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=99.23  E-value=3.5e-09  Score=105.24  Aligned_cols=155  Identities=19%  Similarity=0.224  Sum_probs=124.5

Q ss_pred             hhHHHhhhhhCCCcchhhHHHHHHHHHHHhhhhhhhhHhhH-hcCchHHHHHHHHHHHHHHHHHHhhh-------HHHHH
Q 014481          135 VAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKI-FGGRKVLQTGVLIWSLATALLPLLAG-------FMPGL  206 (423)
Q Consensus       135 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~G~r~~~~~~~~~~~~~~~~~~~~~~-------~~~~~  206 (423)
                      .+...+.+.+|.+.+....+...+....-+.++++|+++|+ +|+++.++++.++..++.++++..+.       .....
T Consensus         9 iLvlYl~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~~~~~   88 (654)
T TIGR00926         9 ILVLYFLNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGHPLHDLLD   88 (654)
T ss_pred             HHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccccchHHHHH
Confidence            34445666789999998889888888888999999999996 69999999999998888877643211       11335


Q ss_pred             HHHHHHHHhhcccchHhHHHHHHhcCCCC---chhhHHHHHHhhhhhHHHHHHhhHHHhhhcc-------CchHHHHHHH
Q 014481          207 VLSRVLVGIGEGVSPSAATDLIARSIPLE---ERSRAVSFVFGGLSFGSVAGLLLAPPIIENL-------GWESVFYIFG  276 (423)
Q Consensus       207 ~~~~~l~G~~~~~~~~~~~~~i~~~~~~~---~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~-------gw~~~~~~~~  276 (423)
                      +++..+.++|.|++-+...+...|.++++   +|...+.++..+.++|+++++++.+++.+..       +|...|.+.+
T Consensus        89 l~gLaLia~G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF~i~~  168 (654)
T TIGR00926        89 LLGLALIALGTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYPLAFGVPA  168 (654)
T ss_pred             HHHHHHHHhhccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHHH
Confidence            67778888999999999999999999754   3677888999999999999999999887442       6999999988


Q ss_pred             HHHHHHHHHHHhh
Q 014481          277 LLGIAWFSGFKIL  289 (423)
Q Consensus       277 ~~~~~~~~~~~~~  289 (423)
                      +..++.++++...
T Consensus       169 i~m~ia~lvf~~g  181 (654)
T TIGR00926       169 ILMILALIVFMAG  181 (654)
T ss_pred             HHHHHHHHHHHHh
Confidence            8887776665443

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=99.23  E-value=2.7e-10  Score=108.33  Aligned_cols=151  Identities=17%  Similarity=0.131  Sum_probs=113.1

Q ss_pred             hhhHHHhhhhhCCCcchhhHHHHHHHHHHHhhhhhhhhHhhH-hcCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 014481          134 SVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKI-FGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSRVL  212 (423)
Q Consensus       134 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  212 (423)
                      ....|.+.++.+.++.+.+++.++..++...+..+.+++.|| ++.++.+..+.++.+++.+++ ...++++.+++..++
T Consensus       228 ~~~~p~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~~~l  306 (400)
T PRK11646        228 MLMLPIMVNDIAGSPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSMFPI-GMVSNLQQLFTLICL  306 (400)
T ss_pred             HHhhhhhHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHH-HHhhhHHHHHHHHHH
Confidence            345677666665577888998888877776666666776654 666777777777777776555 345566666677778


Q ss_pred             HHhhcccchHhHHHHHHhcCCCCchhhHHHHHHhhhhhHHHHHHhhHHHhhhcc---Cc-hHHHHHHHHHHHHHHHH
Q 014481          213 VGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENL---GW-ESVFYIFGLLGIAWFSG  285 (423)
Q Consensus       213 ~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~---gw-~~~~~~~~~~~~~~~~~  285 (423)
                      .|++.+...|...+++.+..|+++||+++|+++....+|..+||.++|++.+..   +. ...+++.+++.++..+.
T Consensus       307 ~~~g~~~~~p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  383 (400)
T PRK11646        307 FYIGSIIAEPARETLSASLADARARGSYMGFSRLGLALGGAIGYIGGGWLFDLGKALNQPELPWMMLGIIGLITLLA  383 (400)
T ss_pred             HHHHHHHHHccHHHHHHhcCCcccchhhhhHHHHHHHHHHHhcccchHHHHHHHhhcCCcchHHHHHHHHHHHHHHH
Confidence            888888888888999999999999999999999999999999999999999874   32 44555555555554443

>TIGR00896 CynX cyanate transporter

Probab=99.21  E-value=6.9e-10  Score=103.91  Aligned_cols=139  Identities=14%  Similarity=0.023  Sum_probs=107.3

Q ss_pred             HhhhhhhhhhHHHhhhhhCCCcchhhHHHHHHHHHHHhhhhhhhhHhhHh-cCchHHHHHHHHHHHHHHHHHHhhhHHHH
Q 014481          127 NMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIF-GGRKVLQTGVLIWSLATALLPLLAGFMPG  205 (423)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-G~r~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (423)
                      ..........+|.+.++.|.+..+.+++.+...++..++.++.|++.||+ +||+.+.++.++.+++.+++....++ ..
T Consensus       210 ~~~~~~~~~~lp~~~~~~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  288 (355)
T TIGR00896       210 SGLYYSLIGWLPAILISHGASAATAGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVGLCGLLFAPMH-GL  288 (355)
T ss_pred             HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHhhhh-HH
Confidence            33344455567777778899999999999999999999999999999999 56666777777766666555333322 22


Q ss_pred             HHHHHHHHHhhcccchHhHHHHHHhcCC-CCchhhHHHHHHhhhhhHHHHHHhhHHHhhhccC
Q 014481          206 LVLSRVLVGIGEGVSPSAATDLIARSIP-LEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLG  267 (423)
Q Consensus       206 ~~~~~~l~G~~~~~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g  267 (423)
                      . ...++.|++.+...+...+.+.+..+ +++++...++.+....+|..+||.+.|.+.++.|
T Consensus       289 ~-~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~~~~g  350 (355)
T TIGR00896       289 W-AWALVLGLGQGGAFPLALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGVLHDISG  350 (355)
T ss_pred             H-HHHHHHHHhhhhHhHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            2 24567899999988887777776554 4567899999999999999999999999998766

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=99.21  E-value=4.9e-10  Score=107.03  Aligned_cols=259  Identities=19%  Similarity=0.173  Sum_probs=164.7

Q ss_pred             hhhHHHhhhhhCCCcchhhHHHHHHHHHHHhhhhhhhhHhhHhc-----CchHHHHHHHHHHHHHHHHHHhhh---HHHH
Q 014481          134 SVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFG-----GRKVLQTGVLIWSLATALLPLLAG---FMPG  205 (423)
Q Consensus       134 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G-----~r~~~~~~~~~~~~~~~~~~~~~~---~~~~  205 (423)
                      ....+.+.+++|+++++...+.++..+... ..+++|.++|-+.     ||+-++++.++.+++.+.++..+.   +...
T Consensus        10 ~~~~~~l~~~l~ls~~~~~~~~~~~~lPw~-~Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~~s~~~   88 (433)
T PF03092_consen   10 LAIYPFLKDDLGLSPAQLQRLSSLASLPWS-IKPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPASESSAAI   88 (433)
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHhCchH-HhhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccccchhhh
Confidence            345677889999999999999888888875 5778899999873     455556666665444444433332   4556


Q ss_pred             HHHHHHHHHhhcccchHhHHHHHHhcCC--CCchhhHHHHHHhhhhhHHHHHHhhHHHhhhccCchHHHHHHHHHHHHHH
Q 014481          206 LVLSRVLVGIGEGVSPSAATDLIARSIP--LEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWF  283 (423)
Q Consensus       206 ~~~~~~l~G~~~~~~~~~~~~~i~~~~~--~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw~~~~~~~~~~~~~~~  283 (423)
                      ..++-++..+|......+..+++.|...  ++.||...+.......+|.+++..++|.+.+..++++.|.+.+++..+..
T Consensus        89 ~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~~~~~f~i~~~~~~l~~  168 (433)
T PF03092_consen   89 AVVLLFLASFGYAFADVAADALVVELARREPESRGDLQSFVWGVRSVGSLVGSLLSGPLLDSFGPQGVFLISAALPLLML  168 (433)
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCeEEehHHHHHHHHHH
Confidence            6677788889999999999999999883  34478888899999999999999999999999999999999888877765


Q ss_pred             HHHHhhccCCcCcCCCC-C--cchhhhhhhhhhhhhHHhhccccCCCcHHHhhhcHHHHHHHH-HHHHHHHHHHHHHhhh
Q 014481          284 SGFKILQEGETSNGATL-A--PRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIY-AHFCGSWGHYTCLSWL  359 (423)
Q Consensus       284 ~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~~~~~  359 (423)
                      +..+++.++++...... .  .++.........++.         ...+++.++.+.+|...+ ..++............
T Consensus       169 ~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~a~~  239 (433)
T PF03092_consen  169 IVALFLLEERKVRPADEVFSFGKEEVPCLFGSFREQ---------LSELWRALQQRAIWQPILFFIFFFNLPPSISSASS  239 (433)
T ss_pred             HHHHHhhhhccccccchhhcccccccchhhHHHHHH---------HHHHHHHHhhhHHHHHHHHHHHHHHhccCCCCccE
Confidence            55555555422111110 0  000000000000111         112467777888887666 3332222221111101


Q ss_pred             hHHHHHhhC---CChhhHHHHHHHHHHHHHHHHHHHHHHhHHhhhc
Q 014481          360 PTYFSEELS---LNLTEAAWVSILPPLASVLVTSIAAQFADNLIAT  402 (423)
Q Consensus       360 ~~~~~~~~g---~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~r  402 (423)
                      -.+..+..+   +++...+.+..+..++.++|..+......+..-|
T Consensus       240 fy~~~~~~~gp~fs~~f~~~~~~vg~~~~l~g~~~y~~~~~~~~~R  285 (433)
T PF03092_consen  240 FYFQTDALGGPHFSPSFYGTLSIVGSIASLLGILLYRKYFSNWSWR  285 (433)
T ss_pred             EEEEeccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH
Confidence            112223345   7887777777666677777766666555444433

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=99.17  E-value=1.1e-10  Score=103.67  Aligned_cols=132  Identities=14%  Similarity=0.096  Sum_probs=99.2

Q ss_pred             HHHHHHHhhhhhhhhHhhHhcCchHHHHHHHHHHHHHHHHHHhhh-HH--HHHHHHHHHHHhhcccchHhHHHHHHhcCC
Q 014481          157 SFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAG-FM--PGLVLSRVLVGIGEGVSPSAATDLIARSIP  233 (423)
Q Consensus       157 ~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~l~G~~~~~~~~~~~~~i~~~~~  233 (423)
                      +..+.-+-|.++.+++.||+|||+++..+++++++..++.....+ |.  .+++.+|++.    ++.+.+.+.|..|.+|
T Consensus       389 itslaefPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~c~~rn~~tvllf~arafi----sg~fqvaYvYtPEVyP  464 (528)
T KOG0253|consen  389 ITSLAEFPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTTCKTRNAYTVLLFTARAFI----SGAFQVAYVYTPEVYP  464 (528)
T ss_pred             HHHHhhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHH----hchheEEEEecCcccc
Confidence            345666788999999999999999999999999988876633322 21  1334445444    4445666789999999


Q ss_pred             CCchhhHHHHHHhhhhhHHHHHHhhHHHhhhccCchHHHHHHHHHHHHHHHHHHhhccCCc
Q 014481          234 LEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFSGFKILQEGET  294 (423)
Q Consensus       234 ~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (423)
                      ..-|+.+.|....+..+|+++.|+++  +.....-..+..+.+.+.++..++..++|-+++
T Consensus       465 TavRatgvGtcSsmaRIggI~~p~iA--~~~e~s~sl~i~vy~~~~ilagIavcffPiEtk  523 (528)
T KOG0253|consen  465 TAVRATGVGTCSSMARIGGIFSPVIA--MRAELSTSLPIFVYGALFILAGIAVCFFPIETK  523 (528)
T ss_pred             hhhhhcchhhhhhHHhhhhhhhhHHH--HHhccceeehHHHHHHHHHHHHHHheeeeeccC
Confidence            99999999999999999999999999  333334455666777777777777777776544

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=99.17  E-value=6.9e-10  Score=105.03  Aligned_cols=139  Identities=20%  Similarity=0.302  Sum_probs=101.5

Q ss_pred             hhhhhHHH-hhhhhCCCcchhhHHHHHHHHHHHhhhhhhhhHhhHhcCchHHHHHHHHHHHHHHHHHHhh----hHHHHH
Q 014481          132 NLSVAIIP-MSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLA----GFMPGL  206 (423)
Q Consensus       132 ~~~~~~~~-~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~----~~~~~~  206 (423)
                      ......|. +.+++|.++.+.+++.+...++..++.++.|++.||+|+|+.+.++.++..++.+++....    .....+
T Consensus       224 ~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (385)
T TIGR00710       224 AFFSGAPFVYIDIMGVSPSVFGLLFALNIIAMIFGGFLNGRFIKKWGAKSLLRMGLILFAVSAVLLEITAILGLGSWAMI  303 (385)
T ss_pred             HHHHcChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHH
Confidence            33344455 4557899999999999999999999999999999999999999888777776665543221    233445


Q ss_pred             HHHHHHHHhhcccchHhHHHHHHhcCCCCchhhHHHHHHhhhhh-HHHHHHhhHHHhhhccCchHHH
Q 014481          207 VLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSF-GSVAGLLLAPPIIENLGWESVF  272 (423)
Q Consensus       207 ~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-g~~~g~~~~~~l~~~~gw~~~~  272 (423)
                      +...++.|++.+...+.......|..| ++++++.++.+..... |.+.++. .+.+.+..+|...+
T Consensus       304 ~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~i~~~~-~~~~~~~~~~~~~~  368 (385)
T TIGR00710       304 IGPMMFVGIGNSMISSIAMAYALEDFP-HVAGTASALFGTLRLVLGAIVGYL-VSLIHGNTAWPMSL  368 (385)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccCc-ccchHHHHHHHHHHHHHHHHHHHH-HHhccccChHHHHH
Confidence            556778889888888888888888876 7899999998877655 5555555 44444443444333

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=99.17  E-value=1.4e-09  Score=101.86  Aligned_cols=169  Identities=15%  Similarity=-0.030  Sum_probs=112.5

Q ss_pred             HHHHHHHHHHHhhhhhhhhhHHHhhhhhCCCcchhhHHHHHHHHHHHhhhhhhhhHhhHhcC---chHHHH-HHHHHHHH
Q 014481          117 GTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGG---RKVLQT-GVLIWSLA  192 (423)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~---r~~~~~-~~~~~~~~  192 (423)
                      ..+.+.+++.......+...+|.+.++.|.+.. .+...++..+...++   .++++||..|   |+.... ..++.++.
T Consensus       195 ~~~~~~~~~~~~~~~~~~~wlp~~L~~~g~s~~-~~~~~~l~~~~g~~g---~~~~~d~~~r~~~r~~~~~~~~~~~a~~  270 (368)
T TIGR00903       195 WIIGAILGFGVALFDNLAIWLEAALRPAGLEDI-AGDAVALAILAGLIG---VAVIPDRVARAGLRSIYIRAAALLIAAF  270 (368)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCChH-HHHHHHHHHHHHHHH---HHHhhHHhhhhhhHHHHHHHHHHHHHHH
Confidence            344444555555555666778887777787754 555555555554444   4677777654   343332 33333333


Q ss_pred             HHHHHHhhhHHHHHHHHHHHHHhhcccchHhHHHHHHhcCCCCchhhHHHHHHhhhhhHHHHHHhhHHHhhhccCchHHH
Q 014481          193 TALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVF  272 (423)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw~~~~  272 (423)
                      ..+. ....+....+++-.+.|++.....+...++.+|.+|++.|++++|+.+....+|++++|++.+.+..  |.+..|
T Consensus       271 ~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~rgt~~G~~~~~g~~~~~~~~~~~~~~~~--~~~~~f  347 (368)
T TIGR00903       271 FLAL-AFELNRLALFAFIGIAGLLMLPAYAIIMDWIGKFCDKELHGKAAGAIGFTSRAISVALALAAMLFIS--SAEAYF  347 (368)
T ss_pred             HHHH-HHccccHHHHHHHHHHHHhhhhhHHHHHHHHHHhcchhhcCcccchhhHHHHHHHHHHHHHHHHHhc--CHHHHH
Confidence            3333 2233333445555667777777778888999999999999999999999999999999999988773  777888


Q ss_pred             HHHHHHHHHHHHHHHhhccC
Q 014481          273 YIFGLLGIAWFSGFKILQEG  292 (423)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~  292 (423)
                      .+.++..++..+...+++++
T Consensus       348 ~~~~~~~~i~~~~~~~~~~~  367 (368)
T TIGR00903       348 TFLAILITIAFAIALLLPND  367 (368)
T ss_pred             HHHHHHHHHHHHHHHhCCCC
Confidence            88888877766655444443

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=99.16  E-value=1e-09  Score=118.71  Aligned_cols=147  Identities=18%  Similarity=0.181  Sum_probs=119.2

Q ss_pred             hhhhHHH-hhhhhCCCcc-hhhHHHHHHHHHHHhhhhhhhhHhhHhcCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 014481          133 LSVAIIP-MSHRFGWNSS-VAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSR  210 (423)
Q Consensus       133 ~~~~~~~-~~~~~~~s~~-~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (423)
                      ....+|. +.+.+|.+.. ..+++.+...++.+++.+++|++.||+++++.+.++.++.+++.+++. ...+.+.++++.
T Consensus       251 ~~~~~~~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~  329 (1146)
T PRK08633        251 AQANFPAYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLP-TAPSLASVLVLF  329 (1146)
T ss_pred             HHHhhHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHHH-HhhhHHHHHHHH
Confidence            3334444 5677899998 999999999999999999999999999999999888887777766653 445667777888


Q ss_pred             HHHHhhcccchHhHHHHHHhcCCCCchhhHHHHHHhhhhhHHHHHHhhHHHhhhc-cCchHHHHHHHHHHH
Q 014481          211 VLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIEN-LGWESVFYIFGLLGI  280 (423)
Q Consensus       211 ~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~-~gw~~~~~~~~~~~~  280 (423)
                      ++.|++.+...+...+++.+..|++.||+++|+.+....+|.++++.+++.+... .++...+++.+.+.+
T Consensus       330 ~~~g~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  400 (1146)
T PRK08633        330 FLFGFSAGLFIVPLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLFSGLGLSPAGLFYLIALVTL  400 (1146)
T ss_pred             HHHHHHHHHhhHHHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence            9999999988888999999999999999999999999999998888888776542 345556665555443

>PRK10133 L-fucose transporter; Provisional

Probab=99.16  E-value=1.2e-09  Score=104.97  Aligned_cols=140  Identities=16%  Similarity=0.105  Sum_probs=110.9

Q ss_pred             hhhhCCCcchhhHHHHHHHHHHHhhhhhhhhHhhHhcCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcccc
Q 014481          141 SHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSRVLVGIGEGVS  220 (423)
Q Consensus       141 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~  220 (423)
                      ++.+|.++.+.++....+.++..++.++.|++.||+|+|+++..+.++.+++.++. ...++. ..+...++.|++.+..
T Consensus       287 ~~~~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~-~~~~~~-~~~~~~~l~glg~~~i  364 (438)
T PRK10133        287 EEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLIS-AFAGGH-VGLIALTLCSAFMSIQ  364 (438)
T ss_pred             hhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHH-HHcCCh-HHHHHHHHHHHHHHHH
Confidence            45689999999999999999999999999999999999999988877766555444 333332 2345667899999999


Q ss_pred             hHhHHHHHHhcCCCCchhhHHHHHHhhhhhHHHHHHhhHHHhhhccC-chHHHHHHHHHHHHHHH
Q 014481          221 PSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLG-WESVFYIFGLLGIAWFS  284 (423)
Q Consensus       221 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g-w~~~~~~~~~~~~~~~~  284 (423)
                      +|...+...+..+ ++.+.+.++... ..+|..++|.+.|.+.+..| -+..|++..+..+..+.
T Consensus       365 ~P~~~s~a~~~~~-~~~~~as~l~~~-~~~g~~~~~~i~G~l~~~~g~~~~~~~v~~~~~~~~~~  427 (438)
T PRK10133        365 YPTIFSLGIKNLG-QDTKYGSSFIVM-TIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFI  427 (438)
T ss_pred             HHHHHHHHHcccc-hhhccchhHHhH-HhccchHHHHHHHHHHHhccchHHHHHHHHHHHHHHHH
Confidence            9999999999887 456777777764 44788899999999999887 78888766555544433

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=99.16  E-value=8.6e-09  Score=95.18  Aligned_cols=264  Identities=13%  Similarity=0.061  Sum_probs=176.7

Q ss_pred             hHHHhhhh-hCCCcchhh-HHHHHHHHHHHhhhhhhhhHhhHhcCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 014481          136 AIIPMSHR-FGWNSSVAG-LVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSRVLV  213 (423)
Q Consensus       136 ~~~~~~~~-~~~s~~~~~-~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  213 (423)
                      ..|.+.+. .|++..++. -+.-...-.+.+..++...+.|..|.|++++++.+...+...++ ...++...+-+..++.
T Consensus        26 l~~yL~~~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l~Ykpviil~~~~~i~t~~ll-l~~~sv~~mq~~q~~y  104 (412)
T PF01770_consen   26 LTPYLTGPDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYLRYKPVIILQALSYIITWLLL-LFGTSVLAMQLMQFFY  104 (412)
T ss_pred             chHHHcCCccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH-HHHCcHHHHHHHHHHH
Confidence            34555554 788887764 45555666677788889999999999999999988877766665 6778889999999999


Q ss_pred             HhhcccchHhHHHHHHhcCCCCchhhHHHHHHhhhhhHHHHHHhhHHHhhhcc--CchHHHHHHHHHHHHHHHHHHhhcc
Q 014481          214 GIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENL--GWESVFYIFGLLGIAWFSGFKILQE  291 (423)
Q Consensus       214 G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~--gw~~~~~~~~~~~~~~~~~~~~~~~  291 (423)
                      |++.+. ..+..+++-...++++-.++.+....+.-+|..++.++|-.+....  +++....+......+.++..+++|.
T Consensus       105 g~~~a~-evay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs~~~~sy~~L~~isl~~~~~a~~~~~fLP~  183 (412)
T PF01770_consen  105 GLATAA-EVAYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVSFGGVSYFQLNYISLASVSLALLIALFLPM  183 (412)
T ss_pred             HHHHHH-HHHHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            999765 5777888888889899999999999999999999999988877643  3555555555555556666677776


Q ss_pred             CCcCcCCCCCcc-------hhhhhhhhhhhhh---HHhhcccc---------CCCcHHHhhhcHHHHHHHHHHHHHHHHH
Q 014481          292 GETSNGATLAPR-------SNYINMKKSLSAS---LEEMGESL---------KDVPWKAIFRSKAVWAMIYAHFCGSWGH  352 (423)
Q Consensus       292 ~~~~~~~~~~~~-------~~~~~~~~~~~~~---~~~~~~~~---------~~~~~~~~~~~~~~~~~~l~~~~~~~~~  352 (423)
                      .++..--.+...       .+.....+.....   .++.....         -...+++.+++|.++...+.+.+...++
T Consensus       184 ~~~S~~f~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~y~~~~ll~WSlWWa~atcgy  263 (412)
T PF01770_consen  184 PKRSLFFHRKPPAEQDANESESDKMNESPESSSSTEKSPSTESSSRKSVLRLLWKDFKSCYSNPRLLLWSLWWAFATCGY  263 (412)
T ss_pred             CCcccceeccCccccccccccccccccccccccccccCcccccchHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhHH
Confidence            554211111000       0000000000000   00000000         0123456678899888888888888888


Q ss_pred             HHHHhhhhHHHHHh--hCCChhhHHHHHHHHHHHHHHHHHHHHHHhHHhhh
Q 014481          353 YTCLSWLPTYFSEE--LSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIA  401 (423)
Q Consensus       353 ~~~~~~~~~~~~~~--~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~  401 (423)
                      +.+.++......+.  -+-...--|.+-++..+.+.++.+..|++-.++.+
T Consensus       264 ~qv~nYvQ~LW~~v~~~~~~~vYNG~VeA~~tllgA~~al~~g~v~~~w~~  314 (412)
T PF01770_consen  264 YQVINYVQSLWDTVPPSDNESVYNGAVEAASTLLGAIAALLAGYVKVNWDR  314 (412)
T ss_pred             HHHHHHHHHHHHhcCCCCCCcccchHHHHHHHHHHHHHHHHHhHhhcchHH
Confidence            88888777776654  12333445778888888888888999988554443

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>PF13347 MFS_2: MFS/sugar transport protein

Probab=99.15  E-value=1.3e-09  Score=104.70  Aligned_cols=150  Identities=20%  Similarity=0.177  Sum_probs=122.7

Q ss_pred             HHHHHHHHHHhhhhhhhhhHHHhhhh-hCCCcchhhHHHHHHHHHHHhhhhhhhhHhhHhcCchHHHHHHHHHHHHHHHH
Q 014481          118 TTSLAFVICNMDKVNLSVAIIPMSHR-FGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALL  196 (423)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~  196 (423)
                      .+.+..++..+.........+.+.++ +|.+ ...+.+..+..++..++.+++++++||+|+|+.+..+.++.+++.++.
T Consensus       229 ~l~~~~~~~~~~~~~~~~~~~y~~~~vl~~~-~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~  307 (428)
T PF13347_consen  229 ILLLAFFLQWLAFALMNTFLPYYFTYVLGNE-GLISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGFLLL  307 (428)
T ss_pred             HHHHHHHHHHhhhhhhhhHHHHHHHHHhcCc-hhhHHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHHHHHH
Confidence            44455555556666666666665555 4544 677888889999999999999999999999999999999999988877


Q ss_pred             HHhh-hHHHHHHHHHHHHHhhcccchHhHHHHHHhcCCC-------CchhhHHHHHHhhhhhHHHHHHhhHHHhhhccCc
Q 014481          197 PLLA-GFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPL-------EERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGW  268 (423)
Q Consensus       197 ~~~~-~~~~~~~~~~~l~G~~~~~~~~~~~~~i~~~~~~-------~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw  268 (423)
                      .... ++.+.+++..++.|++.+...+...++++|..+.       ++.|..+|.++....+|..+++.+.+.+.+..|+
T Consensus       308 ~~~~~~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~l~~~Gy  387 (428)
T PF13347_consen  308 FFLGPGSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLLLALVGY  387 (428)
T ss_pred             HHHHhhhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHHHHHhCc
Confidence            5555 5778899999999999999999999999999863       3458889999999999999999999988776554

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=99.14  E-value=2.6e-09  Score=101.47  Aligned_cols=170  Identities=15%  Similarity=0.085  Sum_probs=112.3

Q ss_pred             HHHHHHHHHhhhhhhhhhHHHhhhhhCCCcchhhHHHHHHHHHHHhhhhhhhhHhhHhcCchHHHHHHHHHHHHHHHHH-
Q 014481          119 TSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLP-  197 (423)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~-  197 (423)
                      +++.+++.+.....++..+|.+.++ +.+.........+..+...+..+++|+++||+|+|+++.++.++..+...... 
T Consensus       257 lslly~~tFG~fvg~s~~lp~~~~~-~~~~~~~l~~~~l~~l~~~l~rplgG~LADRiG~~~vl~~~~i~~~i~~~~~~l  335 (462)
T PRK15034        257 LSLLYLATFGSFIGFSAGFAMLAKT-QFPDVNILRLAFFGPFIGAIARSVGGAISDKFGGVRVTLINFIFMAIFSALLFL  335 (462)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-HcChHHHHHHHHHHHHHHHHHHHhhHHHHHhcCchHHHHHHHHHHHHHHHHHHH
Confidence            3334444444444455556654433 22333333334455677888899999999999999999998877666653321 


Q ss_pred             Hhh----hHHHHHHHHHHHHHhhcccchHhHHHHHHhcCCC---------------------CchhhHHHHHHhhhhhHH
Q 014481          198 LLA----GFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPL---------------------EERSRAVSFVFGGLSFGS  252 (423)
Q Consensus       198 ~~~----~~~~~~~~~~~l~G~~~~~~~~~~~~~i~~~~~~---------------------~~r~~~~~~~~~~~~~g~  252 (423)
                      ...    .+++.+.+..+...++.|........++.+++|+                     ++-|.+.|+......+|+
T Consensus       336 ~lp~~~~~~~~~~~~~~~~l~~~~G~gngsvfk~ip~~f~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~G~v~a~G~~Gg  415 (462)
T PRK15034        336 TLPGTGSGNFIAFYAVFMGLFLTAGLGSGSTFQMIAVIFRQITIYRVKMKGGSDEQAQREAVTETAAALGFISAIGAVGG  415 (462)
T ss_pred             HhccccccHHHHHHHHHHHHHHHhcccchHHHHhhHHHHhhhhhhcccccccchhHHhhHHHHHHHHHHHHHHHHHHccc
Confidence            222    2445555555555555555566677788888874                     156788999999999999


Q ss_pred             HHHHhhHHHhhhccC-chHHHHHHHHHHHHHHHHHHhh
Q 014481          253 VAGLLLAPPIIENLG-WESVFYIFGLLGIAWFSGFKIL  289 (423)
Q Consensus       253 ~~g~~~~~~l~~~~g-w~~~~~~~~~~~~~~~~~~~~~  289 (423)
                      .+-|.+.+...+..| +...|++..+..++++++.+..
T Consensus       416 f~~p~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~w~~  453 (462)
T PRK15034        416 FFIPQAFGMSLNMTGSPVGAMKVFLIFYIVCVLLTWLV  453 (462)
T ss_pred             chhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHH
Confidence            999988777776644 8888888888877765555443

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=99.13  E-value=3.2e-09  Score=100.76  Aligned_cols=148  Identities=16%  Similarity=0.077  Sum_probs=113.8

Q ss_pred             HhhhhhCCCcchhhHHHHHHHHHHHhhhhhhhhHhhHhcCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcc
Q 014481          139 PMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSRVLVGIGEG  218 (423)
Q Consensus       139 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~  218 (423)
                      .+.+.+|.++.+.|++.+...++..+++++.+++.||+++|+.+..+.. .++...+. ...++++..+++.++.|++.+
T Consensus       231 ~~~~~lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~~~~~~~~~g~~-~~~~~~~~-~~~~~~~~~~~~~~~~G~~~g  308 (393)
T PRK11195        231 WAPVALGITLNQPAYLQAVVAIGIAVGAGAAARLVTLETVLRVLPAGIL-MGLVVLLM-ALQHSLLPAYPLLILIGALGG  308 (393)
T ss_pred             HHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHHH-HHHHHHHH-HHHhHHHHHHHHHHHHHHhhh
Confidence            3556789999999999999999999999999999999999988877753 34443333 335555666677788999988


Q ss_pred             cchHhHHHHHHhcCCCCc-hhhHHHHHHhhhhhHHHHHHhhHHHhhhccCchHHHHHHHHHHHHHHHHHHhh
Q 014481          219 VSPSAATDLIARSIPLEE-RSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFSGFKIL  289 (423)
Q Consensus       219 ~~~~~~~~~i~~~~~~~~-r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw~~~~~~~~~~~~~~~~~~~~~  289 (423)
                      ...+...+.+.+..|++. +|++.++.+...++|..++..+.+.+ ...|-+..+++.+...++.+.....+
T Consensus       309 ~~~~~~~~~~q~~~~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  379 (393)
T PRK11195        309 FFVVPMNALLQHRGHVLVGAGHSIAVQNFNENLAMLLMLGLYSLL-VKLGVPVVAVIVGFGLLVALAMALLW  379 (393)
T ss_pred             hhhhhHHHHHHhhCcccccchhHHHHHhHHHHHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHH
Confidence            888888888888766544 79999999999999999999999865 56677777666555555444443333

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=99.12  E-value=1e-09  Score=118.37  Aligned_cols=162  Identities=12%  Similarity=0.035  Sum_probs=123.3

Q ss_pred             HHHHHHHHhhhhhhhhhHHHh-hhhhCCCcchhhHHHHHHHHHHHhhhhhhhhHhhHhcCchHHHHHHHHHHHHHHHHHH
Q 014481          120 SLAFVICNMDKVNLSVAIIPM-SHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPL  198 (423)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~  198 (423)
                      .+..++..+....+...+|.+ .+.+|.+..+.|++.+.+.++.+++.++.|+++|+.++++.+.++.++.+++.+.+..
T Consensus       231 ~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~l~~  310 (1140)
T PRK06814        231 ILGISWFWLVGAVVLSQLPLLAKETLGGDENVATLFLAVFSVGVAVGSFLASKLSEGRITLLYVPIGALLMGLFGLDLAF  310 (1140)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCceeeeeehHHHHHHHHHHHHHHh
Confidence            333333333334444455654 4568999999999999999999999999999999888877776666665555443322


Q ss_pred             h-------------------hhHHHHHHHHHHHHHhhcccchHhHHHHHHhcCCCCchhhHHHHHHhhhhhHHHHHHhhH
Q 014481          199 L-------------------AGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLA  259 (423)
Q Consensus       199 ~-------------------~~~~~~~~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~  259 (423)
                      .                   ..+.+.++++.++.|++.+...+...+++.+.+|++.||+++|+.+....+|..+|++++
T Consensus       311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~  390 (1140)
T PRK06814        311 ASSSVPAEPAQLKSILVFLSKRHGWRILIDLFGLAAAGGLYIVPLFAALQAWANPAHRARVIAANNVLNAAFMVAGTIIL  390 (1140)
T ss_pred             cccccccccccccchhhhhcccccHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHH
Confidence            1                   145567778888999999999999999999999999999999999999999999999999


Q ss_pred             HHhhh-ccCchHHHHHHHHHHHH
Q 014481          260 PPIIE-NLGWESVFYIFGLLGIA  281 (423)
Q Consensus       260 ~~l~~-~~gw~~~~~~~~~~~~~  281 (423)
                      +.+.+ ..++...+++.+++.++
T Consensus       391 g~l~~~~~~~~~~~~~~~~~~~~  413 (1140)
T PRK06814        391 ALLQALGFSIPWIILFIALANLI  413 (1140)
T ss_pred             HHHHHhccCHHHHHHHHHHHHHH
Confidence            99874 44667666665554433

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=99.12  E-value=9.4e-10  Score=107.68  Aligned_cols=136  Identities=17%  Similarity=0.140  Sum_probs=112.8

Q ss_pred             hhhhhhhHHH-hhhhhCCCcchhhHHHHHHHHHHHhhhhhhhhHhhHhcCchHHHHHHHHHHHHHHHHHHhh--hHHHHH
Q 014481          130 KVNLSVAIIP-MSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLA--GFMPGL  206 (423)
Q Consensus       130 ~~~~~~~~~~-~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~--~~~~~~  206 (423)
                      ......+.|. ++..+|.++.+.|+......++..++.++.|++.||+|+|+.+..+.++.+++.+++....  ++.+..
T Consensus       275 ~~~~~~~~~~~lq~v~g~s~~~ag~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~  354 (495)
T PRK14995        275 LVGFELLMAQELQFVHGLSPLEAGMFMLPVMVASGFSGPIAGILVSRLGLRLVATGGMALSALSFYGLAMTDFSTQQWQA  354 (495)
T ss_pred             HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHhcCCCchHHH
Confidence            3334445555 5566899999999999999999999999999999999999999888888777665543322  344556


Q ss_pred             HHHHHHHHhhcccchHhHHHHHHhcCCCCchhhHHHHHHhhhhhHHHHHHhhHHHhhhc
Q 014481          207 VLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIEN  265 (423)
Q Consensus       207 ~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~  265 (423)
                      +...++.|+|.+...+.....+.+..|+++++.+.++++....+|..+|+.+.+.+.+.
T Consensus       355 ~~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lG~~~G~ai~g~i~~~  413 (495)
T PRK14995        355 WGLMALLGFSAASALLASTSAIMAAAPPEKAAAAGAIETMAYELGAGLGIAIFGLLLSR  413 (495)
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHhcCCHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            67788999999998888888888999999999999999999999999999999988753

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=99.11  E-value=3.3e-09  Score=100.78  Aligned_cols=135  Identities=16%  Similarity=0.135  Sum_probs=91.5

Q ss_pred             hhhhhCCCcchhhHHHHHHHHHHHhhhhhhhhHhhHhcCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhccc
Q 014481          140 MSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSRVLVGIGEGV  219 (423)
Q Consensus       140 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~  219 (423)
                      +.+++|.+..+.+.+.+...++..++.++.+++.||+|+|+.+.++.++..++.++.. ..++.+..+....+.+.|.+.
T Consensus       230 ~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~g~~~  308 (392)
T PRK10473        230 LMEQMGFSRGEYAIIMALTAGVSMTVSFSTPFALGIFKPRTLMLTSQVLFLAAGITLA-LSPSHAVSLFGITLICAGFSV  308 (392)
T ss_pred             HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence            4567899999999999999999999999999999999999999999888777776653 333333333434444444333


Q ss_pred             chHhHHHHHHhcCCCCchhhHHHHHHhhhhhHHHHHHhhHHHhhhccCchHHHHHHHHHHH
Q 014481          220 SPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGI  280 (423)
Q Consensus       220 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw~~~~~~~~~~~~  280 (423)
                      ..+.  ....+..|.++|+   +.......++..+|+.+++++.+..|+.....+.+++.+
T Consensus       309 ~~~~--~~~~~~~~~~~~~---g~~~~~~~~~~~~g~~~~~~l~~~~g~~~~~~~~~~~~~  364 (392)
T PRK10473        309 GFGV--AMSQALGPFSLRA---GVASSTLGIAQVCGSSLWIWLAAVLGISAWNMLIGILIA  364 (392)
T ss_pred             HhHH--HHHHHhccCcccc---cHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHH
Confidence            3333  2333444544443   444445567777888888888887787765555555443

>PRK09848 glucuronide transporter; Provisional

Probab=99.11  E-value=1.1e-09  Score=106.05  Aligned_cols=149  Identities=14%  Similarity=0.098  Sum_probs=109.7

Q ss_pred             HHHHHHHHhhhhhhhhhHHHh-hhhhCCCcchhhHHHHHHHHHHHhhhhhhhhHhhHhcCchHHHHHHHHHHHHHHHHHH
Q 014481          120 SLAFVICNMDKVNLSVAIIPM-SHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPL  198 (423)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~  198 (423)
                      .+..++............+.+ .+.+|.+....++......++..++.++++++.||+|+|+.+.++.++.+++.++...
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~  313 (448)
T PRK09848        234 CIGALCVLISTFAVSASSLFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFW  313 (448)
T ss_pred             HHHHHHHHHHHHHHhhhheeeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHH
Confidence            333333333334444445543 4456766555555455556778889999999999999999999998887777665533


Q ss_pred             hh-hHHHHHHHHHHHHHhhcccchHhHHHHHHhcCCCC-------chhhHHHHHHhhhhhHHHHHHhhHHHhhhccCc
Q 014481          199 LA-GFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLE-------ERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGW  268 (423)
Q Consensus       199 ~~-~~~~~~~~~~~l~G~~~~~~~~~~~~~i~~~~~~~-------~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw  268 (423)
                      .. ++++.+++..++.|+|.+...+...++.+|..+.+       ++|..+|+++....+|..+|+.+.+.+.+..|+
T Consensus       314 ~~~~~~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~l~~~G~  391 (448)
T PRK09848        314 VSVWSLPVALVALAIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFILGLSGY  391 (448)
T ss_pred             cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            22 34566667778899999999999999999988654       358999999999999999999999998776555

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=99.10  E-value=6.4e-10  Score=103.74  Aligned_cols=135  Identities=27%  Similarity=0.298  Sum_probs=109.4

Q ss_pred             HHHHHHhhhhhhhhhHHHh-hhhhCCC-cchhhHHHHHHHHHHHhhhhhhhhHhhHhcCchHHHHHHHHHHHHHHHHHHh
Q 014481          122 AFVICNMDKVNLSVAIIPM-SHRFGWN-SSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLL  199 (423)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~-~~~~~~s-~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~  199 (423)
                      ..+...+.........|.+ .+++|.+ ..+.+++.++..+...++.++.|++.||+|+|+...+......+..+.+...
T Consensus       214 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  293 (352)
T PF07690_consen  214 AFFLFFFVFSGFSFFLPLYLQEVLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRFGRRRRLLIAILLLILGALGLLLL  293 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCCHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCS
T ss_pred             hhhHHHHHHHHhhcccchhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHH
Confidence            3333334444566677775 8889999 7899999999999999999999999999999888877777666665554322


Q ss_pred             h--hHHHHHHHHHHHHHhhcccchHhHHHHHHhcCCCCchhhHHHHHHhhhhhHHHHHH
Q 014481          200 A--GFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGL  256 (423)
Q Consensus       200 ~--~~~~~~~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~  256 (423)
                      .  ++....++..++.|++.+...+....++.+.+|+++||++.|+.+...++|..+||
T Consensus       294 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~igP  352 (352)
T PF07690_consen  294 PFSSSPVWLIIALFLIGFGFGIVFPILFSLIQELVPPEYRGTAFGLFNSIGSLGGIIGP  352 (352)
T ss_dssp             HHHCHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCHTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence            2  23456666788899999999999999999999999999999999999999999987

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=99.10  E-value=8.2e-10  Score=108.00  Aligned_cols=140  Identities=16%  Similarity=0.197  Sum_probs=113.9

Q ss_pred             HhhhhhhhhhHHHh-hhhhCCCcchhhHHHHHHHHHHHhhhhhhhhHhhHhcCchHHHHHHHHHHHHHHHHHH-h--hhH
Q 014481          127 NMDKVNLSVAIIPM-SHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPL-L--AGF  202 (423)
Q Consensus       127 ~~~~~~~~~~~~~~-~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~-~--~~~  202 (423)
                      .+........+|.+ .+.+|.++.+.++......++..++.++.|++.||+|||+.+.++.++.+++..+... .  ..+
T Consensus       268 ~~~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  347 (485)
T TIGR00711       268 GLGLYGSFYLLPLYLQQVLGYTALQAGLHILPVGLAPMLSSPIAGRMGDKIDPRKLVTIGLILYAVGFYWRAFTFTPDTP  347 (485)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHhccCCCCCC
Confidence            33333444456664 4558999999999999999999999999999999999999999998887777766531 1  233


Q ss_pred             HHHHHHHHHHHHhhcccchHhHHHHHHhcCCCCchhhHHHHHHhhhhhHHHHHHhhHHHhhhcc
Q 014481          203 MPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENL  266 (423)
Q Consensus       203 ~~~~~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~  266 (423)
                      ++.++...++.|++.+...+.......+..|+++|+++.|+.+....+|..+|+.+.+.+.++.
T Consensus       348 ~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~~~~~~  411 (485)
T TIGR00711       348 FLAIALPQFIRGFGMGCFFMPLTTIALSGLPPHKIARGSSLSNFTRQLGGSIGTALITTILTNR  411 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4566667888999998888777788888889999999999999999999999999999988753

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=99.08  E-value=2.2e-07  Score=88.46  Aligned_cols=275  Identities=10%  Similarity=-0.025  Sum_probs=166.2

Q ss_pred             HHHHHHHHHHHHHHhhhhhhhhhHHHhhhhhCC-----CcchhhHHHHHHHHHHHhh-hhhhhhHhhHhcCchHHHHHHH
Q 014481          114 KLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGW-----NSSVAGLVQSSFFWGYALS-QLPGGWLAKIFGGRKVLQTGVL  187 (423)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----s~~~~~~~~~~~~~~~~~~-~~~~g~l~dr~G~r~~~~~~~~  187 (423)
                      +.++.+.+..++..+..+..    -.+.+.+.+     +...+.++.+...+...+. .++.+++++|++|++.+-+...
T Consensus         7 ~k~~~~~l~fF~il~~Y~iL----R~lKD~lvv~~~~~gae~i~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~lf~~~~~   82 (472)
T TIGR00769         7 KKFLPLFLMFFCILFNYTIL----RDTKDTLVVTAKGSGAEIIPFLKTWVVVPMAVIFMLIYTKLSNILSKEALFYTVIS   82 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHHH----HhhhhheeecccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhHHHHHH
Confidence            44445555555554444443    335555544     3467889999888877777 8999999999999999888766


Q ss_pred             HHHHHHHHHHHh----hh--------------------------HHHHHHHHHHHHHhhcccchH-hHHHHHHhcCCCCc
Q 014481          188 IWSLATALLPLL----AG--------------------------FMPGLVLSRVLVGIGEGVSPS-AATDLIARSIPLEE  236 (423)
Q Consensus       188 ~~~~~~~~~~~~----~~--------------------------~~~~~~~~~~l~G~~~~~~~~-~~~~~i~~~~~~~~  236 (423)
                      .+.....++++.    .+                          +.|...+..+...+-...... ...++++|.++.++
T Consensus        83 ~F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~~~i~~~~~W~~~~FYv~~elw~~~vvS~lFW~fandi~t~~q  162 (472)
T TIGR00769        83 PFLGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFMGFIAILRIWSFALFYVMAELWGSVVLSLLFWGFANQITTIDE  162 (472)
T ss_pred             HHHHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH
Confidence            666555554333    01                          123333444445555455555 77899999999999


Q ss_pred             hhhHHHHHHhhhhhHHHHHHhhHHHhhhc--------cCch----HHHHHHHHHHHHHHHHHHhhccCCcCcCCCCCcch
Q 014481          237 RSRAVSFVFGGLSFGSVAGLLLAPPIIEN--------LGWE----SVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRS  304 (423)
Q Consensus       237 r~~~~~~~~~~~~~g~~~g~~~~~~l~~~--------~gw~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  304 (423)
                      -.|.++++..+.++|.++++.+..++.+.        ..|.    ..+.+.++..++...+...+.+....++.. .+.+
T Consensus       163 akRfy~l~~~ganlg~i~sg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~  241 (472)
T TIGR00769       163 AKRFYALFGLGANVALIFSGRTIKYFSKLRASLGPGVDGWHVSLKNLMVIVICSGLAIILLYWWVNRNVLTDPRS-YNPA  241 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccc-cchh
Confidence            99999999999999999999998887731        1242    223333333334344444443322111100 0000


Q ss_pred             hhhhhhhhhhhhHHhhccccCCCcHHHhhhcHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhhCCChhh---HHHHHHHH
Q 014481          305 NYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTE---AAWVSILP  381 (423)
Q Consensus       305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~---~~~~~~~~  381 (423)
                      +.         ..++..+..-...++.++++|.++.+++...++..+.+.+....-..+.+.+--+...   .|.+....
T Consensus       242 ~~---------~~k~k~k~~~~es~k~i~~S~yL~~ia~~vi~y~~~~nlve~~~k~~v~~~~p~~~~~~~f~g~~~~~~  312 (472)
T TIGR00769       242 LK---------EKKVKPKMSTMESLKFLVSSPYILDLALLVIAYGISINLVEVTWKSKLKAQYPSPNEYSAFMGDFSTWT  312 (472)
T ss_pred             hc---------cccCCCCCCHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence            00         0000000011124677899999998888888887777777665555555544322222   23445555


Q ss_pred             HHHHHHHHHHHHHHhHHhhhc
Q 014481          382 PLASVLVTSIAAQFADNLIAT  402 (423)
Q Consensus       382 ~~~~~~~~~~~g~l~dr~~~r  402 (423)
                      ++..++..++.+++.+|+|-+
T Consensus       313 gi~tl~~~l~~~~l~~~~Gw~  333 (472)
T TIGR00769       313 GVVSVTMMLLSGNVIRKYGWL  333 (472)
T ss_pred             HHHHHHHHHHHHHHHHHhhHH
Confidence            666666677778999998865

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>TIGR00901 2A0125 AmpG-related permease

Probab=99.08  E-value=2.3e-09  Score=100.40  Aligned_cols=124  Identities=15%  Similarity=0.103  Sum_probs=99.4

Q ss_pred             HHhhhhhhhhhHHHhhhhhCCCcchhhHHHHHHH-HHHHhhhhhhhhHhhHhcCchHHHHHHHHHHHHHHHHHHhh----
Q 014481          126 CNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFF-WGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLA----  200 (423)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~-~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~----  200 (423)
                      ............|.+.+++|.+..+.+.+.++.. ++..++.+++|++.||+|+|+.++++.++.++...+.....    
T Consensus       221 ~~~~~~~~~~~~~~~l~~~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~  300 (356)
T TIGR00901       221 YKLGDSAATVLTTLFLLDMGFSKEEIALVAKINGLLGAILGGLIGGIIMQPLNILYALLLFGIVQALTNAGFVWLASNGH  300 (356)
T ss_pred             HHHHHHHHHHHHHHHHHHcCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence            3344445555666666669999999998888766 67789999999999999999999988888777665543332    


Q ss_pred             ------hHHHHHHHHHHHHHhhcccchHhHHHHHHhcCCCCchhhHHHHHHhhhh
Q 014481          201 ------GFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLS  249 (423)
Q Consensus       201 ------~~~~~~~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~  249 (423)
                            ++.+.++.+.++.+++.+...+...+++.+.+|+++||+.+|+++...+
T Consensus       301 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~  355 (356)
T TIGR00901       301 HDGITFPHLLMLFLTITLEAVTGGLGTVAFVAFLSKLSNPKFGATQMALLSSLSA  355 (356)
T ss_pred             ccccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHh
Confidence                  3446677788899999999999999999999999999999999887654

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=99.07  E-value=5.3e-09  Score=98.74  Aligned_cols=129  Identities=16%  Similarity=0.058  Sum_probs=89.0

Q ss_pred             hhhhhHHH-hhhhhCCCcchhhHHHHHHHHHHHhhhhhhhhHhhHhcCchHHHHHHHHHHHHHHHHHH---hhhHHHHHH
Q 014481          132 NLSVAIIP-MSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPL---LAGFMPGLV  207 (423)
Q Consensus       132 ~~~~~~~~-~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~---~~~~~~~~~  207 (423)
                      ......|. +.+.+|.++.+.+++.+...++..++.++.|++.||+|+|+.+.++.++..+..+....   ...+.+.+.
T Consensus       212 ~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (377)
T PRK11102        212 SFLTAGPFVYIELNGVSPQNFGYYFALNIVFLFVMTIINSRFVRRVGALNMLRFGLWIQFIMGIWLVVSALLDLGFWALV  291 (377)
T ss_pred             HHHHcCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence            33334444 55668999999999999999999999999999999999999998887654443322211   122334444


Q ss_pred             HHHHHHHhhcccchHhHHHHHHhcCCCCchhhHHHHHHhh-hhhHHHHHHhhHHH
Q 014481          208 LSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGG-LSFGSVAGLLLAPP  261 (423)
Q Consensus       208 ~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~-~~~g~~~g~~~~~~  261 (423)
                      ++..+.+.+.+...+.....+.+..| ++++++.++.+.. ..+|..+|+++++.
T Consensus       292 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~~~g~~~~~~  345 (377)
T PRK11102        292 VGVAAFVGCVSMISSNAMAVILDEFP-HMAGTASSLAGTLRFGIGAIVGALLSLA  345 (377)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHhcccc-ccchHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            44444444445555556667777766 8899999986554 55777777776543

>PRK10429 melibiose:sodium symporter; Provisional

Probab=99.06  E-value=2.2e-09  Score=104.45  Aligned_cols=150  Identities=13%  Similarity=0.008  Sum_probs=110.1

Q ss_pred             HHHHHHHHHhhhhhhhhhHHHhhhhhCCCcchhhHHHHHHHHHHHhhhhhhhhHhhHhcCchHHHHHHHHHHHHHHHHHH
Q 014481          119 TSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPL  198 (423)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~  198 (423)
                      +.+..++............+.+.++...+....+++.++..++.+++.++++++.||+|+|+.+.++.++..++.+....
T Consensus       236 ll~~~~~~~~~~~~~~~~~~y~~~y~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~  315 (473)
T PRK10429        236 LLGMALAYNIASNIINGFAIYYFTYVIGDADLFPYYLSYAGAANLVTLILFPRLVKSLSRRILWAGASIFPVLSCGVLLL  315 (473)
T ss_pred             HHHHHHHHHHHHHHHhhheeeEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHH
Confidence            33334333444445555555555554445666777777777889999999999999999999999888776655544322


Q ss_pred             ----hhhHHHHHHHHHHHHHhhcccchHhHHHHHHhcCC-------CCchhhHHHHHHhhhhhHHHHHHhhHHHhhhccC
Q 014481          199 ----LAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIP-------LEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLG  267 (423)
Q Consensus       199 ----~~~~~~~~~~~~~l~G~~~~~~~~~~~~~i~~~~~-------~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g  267 (423)
                          ..++.+.+++..++.|++.+...+...++++|..+       .+..|..+|......-+|..+|+.+.|++.+..|
T Consensus       316 ~~~~~~~~~~~~~i~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~l~~~G  395 (473)
T PRK10429        316 MGLAAPHNALLIVIAGILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVVLGLIG  395 (473)
T ss_pred             HhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence                13445666777788899999888999999999965       3345668899999999999999999999887655


Q ss_pred             c
Q 014481          268 W  268 (423)
Q Consensus       268 w  268 (423)
                      +
T Consensus       396 y  396 (473)
T PRK10429        396 Y  396 (473)
T ss_pred             C
Confidence            5

>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]

Probab=99.03  E-value=6.1e-09  Score=95.49  Aligned_cols=282  Identities=11%  Similarity=0.050  Sum_probs=161.6

Q ss_pred             HHHHHHHHHHHHhhhhhhhhhHHHhhhhhCCCcchhhHHHHHHHHHHHhhhhhhhhHhhH----hcCchHHHHHHHHH-H
Q 014481          116 IGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKI----FGGRKVLQTGVLIW-S  190 (423)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr----~G~r~~~~~~~~~~-~  190 (423)
                      ++.+....+...+.+..-..+.+++..++|++....+.+-.+..+...+.+|+.|..+||    |||||.++....+. +
T Consensus        34 li~v~~ia~Gvqf~wA~elsy~tPyl~~lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~~i~  113 (498)
T KOG0637|consen   34 LISVASIAAGVQFGWALELSYLTPYLQSLGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSLLIA  113 (498)
T ss_pred             HHHHHHHHHHHHHHHHHHhccccHHHHHcCCCcccccccccccccccceecccccccccccccccccccchHHHhhHHHH
Confidence            334444444455666667777888888999999999999999999999999999999995    89999888765443 3


Q ss_pred             HHHHHHHHhhh----------------HHHHHHHHHHHHHhhcccchHhHHHHHHhcCCCCchhh-HHHHHHhhhhhHHH
Q 014481          191 LATALLPLLAG----------------FMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSR-AVSFVFGGLSFGSV  253 (423)
Q Consensus       191 ~~~~~~~~~~~----------------~~~~~~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~-~~~~~~~~~~~g~~  253 (423)
                      ++.++....++                ....+++..-+.-++.-.....+-+++.|....+++.+ +++.+..+..+|++
T Consensus       114 ~~l~Lig~aaDig~~lgd~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~Ans~f~~f~avGnv  193 (498)
T KOG0637|consen  114 VSLFLIGYAADIGLLLGDNERKPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAKKTRANSVFSFFMAVGNV  193 (498)
T ss_pred             HHHhhhhhHhhhhHHhcCCcccccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhhccchhHHHHHHhcce
Confidence            44444432221                11234444445555666777888999999997666666 99999999999999


Q ss_pred             HHHhhHHHhhhcc--Cc---hHHHHHHHHHHHHHHHHHHh-hccCCc--CcC--CCCCcchhhhhhhhhhhhhHHhhccc
Q 014481          254 AGLLLAPPIIENL--GW---ESVFYIFGLLGIAWFSGFKI-LQEGET--SNG--ATLAPRSNYINMKKSLSASLEEMGES  323 (423)
Q Consensus       254 ~g~~~~~~l~~~~--gw---~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (423)
                      +|..+++++.-+.  ..   ...+..++.+-...+.-.-+ ..++..  ...  ++...+....+.+.......++... 
T Consensus       194 LGY~~g~y~~~~~~~~Ft~~~~~~~~C~~~~~~~~~~v~L~~i~~~~~l~~~~~~~~s~~~~~~~~~~~~~~~~~e~fG-  272 (498)
T KOG0637|consen  194 LGYALGSYLGLYKIFPFTLTTACDLYCANLKLCFFLEVTLLLIETSESLWYPQEKPLSPKGTTARSKSSKLPFLLEIFG-  272 (498)
T ss_pred             eeeecccccCceEEeehHHHHHHHHHHHHHHHHHHHhhhhhheecccccccccccCCCCCcccccccccCcchHHHHhc-
Confidence            9998887442211  00   11111111111111111111 111100  000  0000000000000000000001000 


Q ss_pred             cCCCcHHHhhhcHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH-hhCCChhh----------------HHHHHHHHHHHHH
Q 014481          324 LKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLSWLPTYFSE-ELSLNLTE----------------AAWVSILPPLASV  386 (423)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~g~s~~~----------------~~~~~~~~~~~~~  386 (423)
                          .  -....+..+.+++...+.+.+.+.+..+...++-+ .|+-++..                -.+=+.+..+...
T Consensus       273 ----~--~~~mpr~m~~L~i~~lltW~a~f~f~LF~TDfmG~~vy~GDp~a~~~S~a~~~Y~~GV~~G~~GL~ins~~lg  346 (498)
T KOG0637|consen  273 ----A--LKVMPRPMRMLLIVTLLTWIAWFPFLLFDTDFMGREVYGGDPKADENSEAKKLYNAGVRMGCLGLMLNSIVLG  346 (498)
T ss_pred             ----h--HhhCChhHHHHHHHHHHHHHHHHHHHHHHHHhcchHhhCCCCCCCcchhHHHHHHhccccchHHHHHHHHHHH
Confidence                0  11123677888888888888888887777777644 34433211                1233445556666


Q ss_pred             HHHHHHHHHhHHhhhcCC
Q 014481          387 LVTSIAAQFADNLIATGV  404 (423)
Q Consensus       387 ~~~~~~g~l~dr~~~r~~  404 (423)
                      +-+....++.+|+|-|+.
T Consensus       347 i~S~~~~~l~~~~g~r~~  364 (498)
T KOG0637|consen  347 IYSLLVEKLSRKFGTRKR  364 (498)
T ss_pred             HHHHHHHHHHHhcCcceE
Confidence            777788888999985433

>PRK09669 putative symporter YagG; Provisional

Probab=99.03  E-value=4.5e-09  Score=101.52  Aligned_cols=121  Identities=10%  Similarity=0.086  Sum_probs=94.8

Q ss_pred             cchhhHHHHHHHHHHHhhhhhhhhHhhHhcCchHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHhhcccchHhHHH
Q 014481          148 SSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLL-AGFMPGLVLSRVLVGIGEGVSPSAATD  226 (423)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~G~~~~~~~~~~~~  226 (423)
                      +...+.+.....+...++.+++++++||+|+|+.+.++.++.++........ .++.+.+++..++.|++.+...+...+
T Consensus       263 ~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~a  342 (444)
T PRK09669        263 PDLATLFLVTGMIAGLFGALLSERLLGKFDRVRAFKWTIVAFVILSALIFFIPPSNVWLIFALNILFNFIQNLTTPLQWS  342 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444556666778888899999999999999999998877665443322222 356666777888999999999999999


Q ss_pred             HHHhcCCC-------CchhhHHHHHHhhhhhHHHHHHhhHHHhhhccCc
Q 014481          227 LIARSIPL-------EERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGW  268 (423)
Q Consensus       227 ~i~~~~~~-------~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw  268 (423)
                      +++|..+.       +..|..++.+.....+|..+|+.++|.+.+..|+
T Consensus       343 m~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~~~Gy  391 (444)
T PRK09669        343 MFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILAWVDY  391 (444)
T ss_pred             HHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            99998852       2346678899999999999999999999887665

>PRK11043 putative transporter; Provisional

Probab=99.03  E-value=1.8e-08  Score=96.06  Aligned_cols=135  Identities=11%  Similarity=0.090  Sum_probs=102.2

Q ss_pred             hhhHHHhhhhhCCCcchhhHHHHHHHHHHHhhhhhhhhHhhHhcCchHHHHHHHHHHHHHHHHHH----hhhHHHHHHHH
Q 014481          134 SVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPL----LAGFMPGLVLS  209 (423)
Q Consensus       134 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~  209 (423)
                      ....|.+.+++|.+..+.|+......++..++.++.+++.||+|+|+.+....++.+++.+.+..    ..++.+.+++.
T Consensus       223 ~~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  302 (401)
T PRK11043        223 LTGSPFILEQMGYSPADIGLSYVPQTIAFLVGGYGCRAALQKWGGEQLLPWLLVLFAVSVIAIWLASLLSHPSLVPLLIP  302 (401)
T ss_pred             HHHhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHH
Confidence            34466667778999999999888888999999999999999999998776655544444332211    12344455566


Q ss_pred             HHHHHhhcccchHhHHHHHHhcCCCCchhhHHHHHHhhhhhHHHHHHhhHHHhhhccCch
Q 014481          210 RVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWE  269 (423)
Q Consensus       210 ~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw~  269 (423)
                      ..+.|++.+...+...+...+..| +++++++|+++.....+..+++.+.+.+.+.....
T Consensus       303 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~  361 (401)
T PRK11043        303 FCVMAAANGAIYPIVVAQALRPFP-QATGKAAALQNTLQLGLCFLASLLVSALISTPLLT  361 (401)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhCc-ccChHHHHHHHHHHHHHHHHHHHHHHHccCCChhH
Confidence            677888888888888888777776 68999999999988888899999999887753333

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=98.98  E-value=5.4e-08  Score=86.97  Aligned_cols=169  Identities=16%  Similarity=0.073  Sum_probs=130.1

Q ss_pred             HHHHHHHHHhhhhhhhhhHHHhhhhhCCCcchhhHHHHHHHHHHHhhhhhhhhHhhHh-cCchHHHHHHHHHHHHHHHHH
Q 014481          119 TSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIF-GGRKVLQTGVLIWSLATALLP  197 (423)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-G~r~~~~~~~~~~~~~~~~~~  197 (423)
                      +.+.+.++.+..++....+|.+..|-|+|..+.|++.+...+.....++..-.+.+|. .+|+..+...+++.++.+.+.
T Consensus       213 vtLfmGlqS~~~Y~~~~WLP~ili~~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~G~~G~~  292 (395)
T COG2807         213 VTLFMGLQSLLYYIVIGWLPAILIDRGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLVGLVGLL  292 (395)
T ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHHcCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHH
Confidence            3334445556667777889999999999999999999999999999999999999975 456666666666667766664


Q ss_pred             HhhhHHHHHHHHHHHHHhhcccchHhHHHHHHhcCCC-CchhhHHHHHHhhhhhHHHHHHhhHHHhhhcc-CchHHHHHH
Q 014481          198 LLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPL-EERSRAVSFVFGGLSFGSVAGLLLAPPIIENL-GWESVFYIF  275 (423)
Q Consensus       198 ~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~i~~~~~~-~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~-gw~~~~~~~  275 (423)
                      +...+-+.+.  .++.|+|.|..++.....+.+..+. ++-+.-.|..+....+=..+||.+.|++.|.. +|+......
T Consensus       293 ~~P~~~~~lw--~~llG~G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~lhDa~gsw~~~~~~l  370 (395)
T COG2807         293 LAPGQLPILW--ALLLGLGQGGAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGFLHDATGSWSAPLVLL  370 (395)
T ss_pred             HhhhhHHHHH--HHHHhCccchHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhHHHHhcCChHHHHHHH
Confidence            4444323333  4899999999999999999998854 45566677788888888889999999999875 499888877


Q ss_pred             HHHHHHHHHHHHhh
Q 014481          276 GLLGIAWFSGFKIL  289 (423)
Q Consensus       276 ~~~~~~~~~~~~~~  289 (423)
                      +...++..+.-+..
T Consensus       371 ~~~~i~m~i~Gl~a  384 (395)
T COG2807         371 ALATLLMLIFGLRA  384 (395)
T ss_pred             HHHHHHHHHHHhhc
Confidence            77776665554443

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=98.97  E-value=4.8e-09  Score=97.95  Aligned_cols=163  Identities=17%  Similarity=0.097  Sum_probs=137.3

Q ss_pred             HHhhhhhhhhhHHHhhhhhCCCcchhhHHHHHHHHHHHhhhhhhhhHhhHhcCchHHHHHHHHHHHHHHHHHHhhhHHHH
Q 014481          126 CNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPG  205 (423)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (423)
                      .+.....+..++-.-.++.+..+...|........+-++.-++.+++++|+|+-+++.+++.+.++=.+.+ ..-+|+|.
T Consensus       383 mG~g~~lv~tFLfWHled~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~-S~L~n~W~  461 (618)
T KOG3762|consen  383 MGAGVGLVFTFLFWHLEDLGGIKTLFGVVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYY-SYLQNPWM  461 (618)
T ss_pred             HHHHHHHHHHHHHHHHhhcCCcceeeeehhhhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHH-HHhcCchh
Confidence            33344444444444677888888888988888888888889999999999999999999999987777666 45567799


Q ss_pred             HHHHHHHHHhhcccchHhHHHHHHhcCCCCchhhHHHHHHh-hhhhHHHHHHhhHHHhhhccCchHHHHHHHHHHHHHHH
Q 014481          206 LVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFG-GLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFS  284 (423)
Q Consensus       206 ~~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~-~~~~g~~~g~~~~~~l~~~~gw~~~~~~~~~~~~~~~~  284 (423)
                      .+-.-+++|+..+.+|.+..+|+++..||+-|+++.++... ..++|-.+|.+|+|.+.+.+|-+..|++.++.+++.++
T Consensus       462 vLPieilqgit~aliWaa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~fg~~ttf~~~giAcl~~l~  541 (618)
T KOG3762|consen  462 VLPIEILQGITHALIWAAIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERFGARTTFRIFGIACLVTLA  541 (618)
T ss_pred             eeeHHHHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhheeehhHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999998654 66789999999999999999999999999999887766


Q ss_pred             HHHhh
Q 014481          285 GFKIL  289 (423)
Q Consensus       285 ~~~~~  289 (423)
                      ....+
T Consensus       542 ~~~~i  546 (618)
T KOG3762|consen  542 LFISI  546 (618)
T ss_pred             HHHHh
Confidence            65554

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=98.95  E-value=4e-08  Score=95.42  Aligned_cols=173  Identities=14%  Similarity=0.016  Sum_probs=125.8

Q ss_pred             HHHHHHHHHHHHhhhhhhhhhHHHhhhh-hCCCc----chhhHHHHHHHHHHHhhhhhhhhHhhHhcC-----chHH--H
Q 014481          116 IGTTSLAFVICNMDKVNLSVAIIPMSHR-FGWNS----SVAGLVQSSFFWGYALSQLPGGWLAKIFGG-----RKVL--Q  183 (423)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~s~----~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~-----r~~~--~  183 (423)
                      +..+++...+...........++...++ .+.+.    -..+++.++..+...+.+++..++..+.+|     +...  .
T Consensus       274 ~l~l~~~~~~~~~~~~Q~~s~l~l~~~~~~~~~~~~~~ip~~~~~~~n~~~iil~~p~~~~~~~~l~~~~~~~~~~~k~~  353 (475)
T TIGR00924       274 YIVLFLEAVVFWVLYAQMPTSLNFFADNNMHHEMLGMSVPVIWFQSLNPFWVVVGSPVLAMIWTRLGRKGKDPTTPLKFT  353 (475)
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccceEECHHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHH
Confidence            3444444444445555555555554333 33322    226788899999888888886654444433     3433  6


Q ss_pred             HHHHHHHHHHHHHHH--------hhhHHHHHHHHHHHHHhhcccchHhHHHHHHhcCCCCchhhHHHHHHhhhhhHHHHH
Q 014481          184 TGVLIWSLATALLPL--------LAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAG  255 (423)
Q Consensus       184 ~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g  255 (423)
                      +|.++.+++.+..+.        ...++++++...++.|+|.....|...+++.+..|++.||+++|++.....+|..++
T Consensus       354 ~G~~l~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~~~~~ge~~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~l~  433 (475)
T TIGR00924       354 LGMLFCGASFLTFAASIWFADAGGLTSPWFMVLIYLFQTLGELMISPLGLSWWTKIAPQRLMGQMLGMWFLAQAMGSLLG  433 (475)
T ss_pred             HHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            777887777666532        145778899999999999999999999999999999999999999999999999999


Q ss_pred             HhhHHHhhhccCchHHHHHHHHHHHHHHHHHHh
Q 014481          256 LLLAPPIIENLGWESVFYIFGLLGIAWFSGFKI  288 (423)
Q Consensus       256 ~~~~~~l~~~~gw~~~~~~~~~~~~~~~~~~~~  288 (423)
                      +.+.....+..+|.+.|...++..++..++.++
T Consensus       434 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  466 (475)
T TIGR00924       434 GYLATFGAVPQGVTGVFGKIGLVTLLVGVVMAL  466 (475)
T ss_pred             HHHHHHHhcccchhhHHHHHHHHHHHHHHHHHH
Confidence            999988777778888888888777666554444

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]

Probab=98.93  E-value=5e-08  Score=88.78  Aligned_cols=160  Identities=34%  Similarity=0.490  Sum_probs=125.0

Q ss_pred             HHHHHHhhhhhhhhhHHHhhhhhCCCc--chhhHHHHHHHHHHHhhhhhhhhHhhHhcCchHHHHHHHHHHHHHHHHHHh
Q 014481          122 AFVICNMDKVNLSVAIIPMSHRFGWNS--SVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLL  199 (423)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~s~--~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~  199 (423)
                      ..+.............+.+..+++.+.  ...++..+.+.++..++.++.|.+.||+|||+.+..+.....++.++....
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~   89 (338)
T COG0477          10 AALLLGLDLGLLSPALPLLLSTLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALA   89 (338)
T ss_pred             HHHHHHHhcchHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhC
Confidence            333334566666677777777777666  478999999999999999999999999999988888876544544444333


Q ss_pred             hh-HHHHHHHHHHHHHhhcccchHhHHHHHHhcCCC-CchhhHHHHHHh-hhhhHHHHHHhhHHHhhhc--cCchHHHHH
Q 014481          200 AG-FMPGLVLSRVLVGIGEGVSPSAATDLIARSIPL-EERSRAVSFVFG-GLSFGSVAGLLLAPPIIEN--LGWESVFYI  274 (423)
Q Consensus       200 ~~-~~~~~~~~~~l~G~~~~~~~~~~~~~i~~~~~~-~~r~~~~~~~~~-~~~~g~~~g~~~~~~l~~~--~gw~~~~~~  274 (423)
                      .. +.+.+++.|++.|++.+...+...+++.+++++ ++|+...+.... ...+|..+++.+++.+...  .+|++.|.+
T Consensus        90 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (338)
T COG0477          90 PNVGLALLLILRLLQGLGGGGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGALLWGWRAAFLL  169 (338)
T ss_pred             ccchHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHH
Confidence            33 478899999999999999999999999999997 678999998888 6888999999887777654  579986666


Q ss_pred             HHHHHHH
Q 014481          275 FGLLGIA  281 (423)
Q Consensus       275 ~~~~~~~  281 (423)
                      .......
T Consensus       170 ~~~~~~~  176 (338)
T COG0477         170 AALLGLL  176 (338)
T ss_pred             HHHHHHH
Confidence            6655543

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=98.93  E-value=1.2e-06  Score=82.57  Aligned_cols=286  Identities=12%  Similarity=-0.028  Sum_probs=166.6

Q ss_pred             HHHHHHHHHHHHhhhhhhhhhHHHhhhhhCC-CcchhhHHHHHHHHHHHhhhhhhhhHhhHhcCchHHHHHHHHHHHH--
Q 014481          116 IGTTSLAFVICNMDKVNLSVAIIPMSHRFGW-NSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLA--  192 (423)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~--  192 (423)
                      ...+....++...+.-++....+.+..+..- +---.+...-.-.+..++.++..|.+.||..|.+++..+.++--++  
T Consensus         4 ~~~Ly~sh~ls~w~dR~w~Fa~~L~L~~i~p~sLl~~siygl~~~~~~~~f~~~vG~~iD~~~Rl~~~~~~l~~Qn~sv~   83 (432)
T PF06963_consen    4 LWRLYLSHFLSTWGDRMWEFAVPLFLISIFPGSLLPVSIYGLVRSLSAILFGPWVGRWIDRSPRLKVIRTSLVVQNLSVA   83 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhhHHHHHHHhCCcchhhHHHHHHHHHHHHH
Confidence            4456777888888888888888886666532 3333444555566677788899999999999988876664433222  


Q ss_pred             --HHHHHH-hh--h-----H--HHHHHHHHHHHHhhcc-cchHhHHHHHHhcC------CCCchhhHHHHHHhhhhhHHH
Q 014481          193 --TALLPL-LA--G-----F--MPGLVLSRVLVGIGEG-VSPSAATDLIARSI------PLEERSRAVSFVFGGLSFGSV  253 (423)
Q Consensus       193 --~~~~~~-~~--~-----~--~~~~~~~~~l~G~~~~-~~~~~~~~~i~~~~------~~~~r~~~~~~~~~~~~~g~~  253 (423)
                        +.++.. +.  .     .  ...+++.-.+.|.-.- .......++--||.      ++..+.+..+.+.-.--+.-+
T Consensus        84 ~s~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~i~~Las~~~~iavERDWVvvi~~~~~~~La~~NA~mRRIDL~ckl  163 (432)
T PF06963_consen   84 ASCALFLLLLSYPSSSSQSSWLFIALFALLILLGAIERLASIANTIAVERDWVVVIAGGDPGALARMNATMRRIDLFCKL  163 (432)
T ss_pred             HHHHHHHHHHhCCccccccchHHHHHHHHHHHHHHHHHHHHhhhhheeccchhhhhcCCChhhHHHHHHHHHHHHHHHHH
Confidence              221111 11  1     1  1112222222221111 11112222223442      234456666667677778999


Q ss_pred             HHHhhHHHhhhccCchHHHHHHHHHHHHHHHHHHhh-c---cCCcCcCCC----CCcchhhhh---hhhhhhhhHHh--h
Q 014481          254 AGLLLAPPIIENLGWESVFYIFGLLGIAWFSGFKIL-Q---EGETSNGAT----LAPRSNYIN---MKKSLSASLEE--M  320 (423)
Q Consensus       254 ~g~~~~~~l~~~~gw~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~----~~~~~~~~~---~~~~~~~~~~~--~  320 (423)
                      ++|++.|.+.+..+.+...++.++..++..+.=+++ .   +..|....+    ..+..+...   ..+........  .
T Consensus       164 laPl~vG~l~t~~s~~~~~~~i~~~N~~S~~vEy~~l~~VY~~~P~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (432)
T PF06963_consen  164 LAPLFVGLLMTFASPVIAAIFIAGWNLASVFVEYFLLARVYNSVPALAVKKRSSESESSSDEESSSESSSDPSILKRLWN  243 (432)
T ss_pred             HHHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHhcCCCCCccccccccccccccccchhhHHHHHHH
Confidence            999999999998898888888887776654432221 1   111110000    000000000   00000000000  0


Q ss_pred             ccccCCCcHHHhhhcHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhhCCChhhHHHHHHHHHHHHHHHHHHHHHHhHHhh
Q 014481          321 GESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLI  400 (423)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~  400 (423)
                      .-......|+.-+++|.+.... +..+.++...++......|+..+ |+++...|.+-....+.++.|.++..++.+|+|
T Consensus       244 ~~~~~~~~w~~Y~~q~vflas~-alalLY~TVLsf~~lmt~yl~~~-G~s~~~igi~R~~gav~Gl~gT~~~p~l~~riG  321 (432)
T PF06963_consen  244 PLRTIIRGWRTYFRQPVFLASF-ALALLYFTVLSFGGLMTAYLKSQ-GYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRIG  321 (432)
T ss_pred             HHHHHhccHHHHHhCHHHHHHH-HHHHHHHHHhcCcHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            0011134577777777665444 44444444667788899999876 999999999999999999999999999999999


Q ss_pred             hcC
Q 014481          401 ATG  403 (423)
Q Consensus       401 ~r~  403 (423)
                      ..|
T Consensus       322 lvr  324 (432)
T PF06963_consen  322 LVR  324 (432)
T ss_pred             chh
Confidence            653

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=98.86  E-value=1.5e-11  Score=119.03  Aligned_cols=180  Identities=19%  Similarity=0.113  Sum_probs=113.9

Q ss_pred             HHHHHHHHHHHHHHhhhhhhhhhHHHhhhhhCCCcchhhHHHHHHHHHHHhhhhhhhhHhhHhcCchHHHHHHHHHHHHH
Q 014481          114 KLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLAT  193 (423)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~  193 (423)
                      +.+..+.+..+....+......+.+.+.+..+.+..  -+......+...++.++...+.||+|||+.++.+..+.++..
T Consensus       253 ~~~~~~~l~~~~~~~g~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~GRr~~~i~~~~~~~~~~  330 (451)
T PF00083_consen  253 RLLIALLLQFFQQFSGINFIFYYSPSIFENAGISNS--FLATLILGLVNFLGTLLAIFLIDRFGRRKLLIIGLLLMAICS  330 (451)
T ss_pred             cccccccccccccccccccccccccccccccccccc--cccccccccccccccccccccccccccccccccccccccccc
Confidence            333333333333333434455556777777777766  222233445556677777899999999999999988877766


Q ss_pred             HHHH---Hh-hhH----HHHHHHHHHHHHhhcc-cchHhHHHHHHhcCCCCchhhHHHHHHhhhhhHHHHHHhhHHHhhh
Q 014481          194 ALLP---LL-AGF----MPGLVLSRVLVGIGEG-VSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIE  264 (423)
Q Consensus       194 ~~~~---~~-~~~----~~~~~~~~~l~G~~~~-~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~  264 (423)
                      +.++   .. .++    -...+++-.+..++.+ +..+....+.+|.+|.+.|+++.++......++..+++.+...+.+
T Consensus       331 ~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~i~~~i~~~~~~~~~~  410 (451)
T PF00083_consen  331 LILGIIFFLGVSSSSWWSILSIVFLALFFAFFSLGWGPLPWIYTAELFPTKVRSTGIGLSYAVGRIGGFIIPFLFPYLFN  410 (451)
T ss_pred             cccccccccccccccccccccceeeeeccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            5553   11 121    0112222222222222 3345666888999999999999999999999999999999888887


Q ss_pred             ccCchHHHHHHHHHHHH-HHHHHHhhccCCcC
Q 014481          265 NLGWESVFYIFGLLGIA-WFSGFKILQEGETS  295 (423)
Q Consensus       265 ~~gw~~~~~~~~~~~~~-~~~~~~~~~~~~~~  295 (423)
                      ..+-...+++.+.+.++ ..+..+++||++.+
T Consensus       411 ~~~~~~~~~i~~~~~~i~~i~~~~~lpET~g~  442 (451)
T PF00083_consen  411 NLGGWGVFLIFAGVCLIAIIFVYFFLPETKGK  442 (451)
T ss_pred             cccccccchhhHHHHHHHHhheeEEEeeCCCC
Confidence            76633445555555444 45556677887654

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>TIGR00788 fbt folate/biopterin transporter

Probab=98.86  E-value=1.5e-08  Score=98.13  Aligned_cols=127  Identities=16%  Similarity=0.115  Sum_probs=108.5

Q ss_pred             hhhhCCCcchhhHHHHHHHHHHHhhhhhhhhHhhHhcCchHHHHHHHHHHHHHHHHHHhh---------hHHHHHHHHHH
Q 014481          141 SHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLA---------GFMPGLVLSRV  211 (423)
Q Consensus       141 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~  211 (423)
                      .+.+|.++.++|.+.....++.+++....+++.+|++.|+++.++.++.+++.+......         ++.+.++..-+
T Consensus       280 ~~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~~~~~  359 (468)
T TIGR00788       280 TQCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEVFVLGDSI  359 (468)
T ss_pred             cccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeeccccccCCCCeeeeeehhH
Confidence            356899999999999999999999999999999999999999999988887764432111         22234555667


Q ss_pred             HHHhhcccchHhHHHHHHhcCCCCchhhHHHHHHhhhhhHHHHHHhhHHHhhhccC
Q 014481          212 LVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLG  267 (423)
Q Consensus       212 l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g  267 (423)
                      +.+++.+....+...++.+..|++.+|+.++++....++|..+++.+++.+.+..|
T Consensus       360 l~~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~~~g  415 (468)
T TIGR00788       360 IAEVLAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLLMETIG  415 (468)
T ss_pred             HHHHHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            88888888888889999999999999999999999999999999999999998776

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=98.85  E-value=1e-07  Score=90.84  Aligned_cols=144  Identities=17%  Similarity=0.077  Sum_probs=102.2

Q ss_pred             hhhhhHHHhhhhh--CCCcchhhHHHHHHHHHHHhhhhhhhhHhhHhcCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 014481          132 NLSVAIIPMSHRF--GWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLS  209 (423)
Q Consensus       132 ~~~~~~~~~~~~~--~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (423)
                      .....++.+.++.  +.+....+...+.+..+..++.++++++.||+++|+++.+..++..+..++.. ..+.. ..+.+
T Consensus       250 ~~~s~l~~y~~~~~~~~~~~~a~~~~~~~~~~~~vGR~~~~~l~~r~~~~~~l~i~~~~~~~~~ll~~-~~~~~-~~~~~  327 (410)
T TIGR00885       250 MCWTFIIQYAVRLIPGMTAGFAANYNIGAMVIFFISRFIGTWLISYLAAHKVLMAYAIIGMALCLGSI-FAGGH-VGLYC  327 (410)
T ss_pred             HHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHH-HcCCh-HHHHH
Confidence            3445555554443  33444445566777788899999999999999999998888777777666553 33332 33566


Q ss_pred             HHHHHhhcccchHhHHHHHHhcCCCCchhhHHHHHHhhhhhHHHHHHhhHHHhhhcc------CchHHHHHHHHHH
Q 014481          210 RVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENL------GWESVFYIFGLLG  279 (423)
Q Consensus       210 ~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~------gw~~~~~~~~~~~  279 (423)
                      .++.|++.+..+|...+...+..+++.+....++...  .+|+.++|++.|++.|..      +.+..|++..+..
T Consensus       328 l~~~glf~s~~fp~i~sl~~~~~g~~~~~~s~~l~~~--~~Gga~~p~l~G~~~d~~~~~~~~~~~~~~~~~~~~~  401 (410)
T TIGR00885       328 LTLCSAFMSLMFPTIYGIALKGLGQDTKYGAAGLVMA--IIGGGIVPPLQGFIIDMKEIAAAPAVNTSFILPLLCF  401 (410)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHH--HhccchHHHHHHHHHHHhcccccCccchHHHHHHHHH
Confidence            7788888899999999999999985544333333333  399999999999999954      4777777644443

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.85  E-value=1.7e-08  Score=96.44  Aligned_cols=176  Identities=14%  Similarity=0.056  Sum_probs=121.9

Q ss_pred             HHHHHHHHHHHHHHhhhhhhhhhHHHh-hhhhCCCcchhhHHHHHHHHHHHhhhhhhhhHhhHhcCc--------hH-HH
Q 014481          114 KLIGTTSLAFVICNMDKVNLSVAIIPM-SHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGR--------KV-LQ  183 (423)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r--------~~-~~  183 (423)
                      ..++.+.++.+........+...+|.+ .+-+|.+..+.|++.++..+...+..+++|.++||.-+|        |. =.
T Consensus       258 ~~vwai~~~~f~~~~~~~~l~~y~PtY~~~VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l~~~~ls~t~~rkifn~  337 (466)
T KOG2532|consen  258 PPVWAIWISAFGGNWGFYLLLTYLPTYLKEVLGFDVRETGFLSALPFLAMAIVKFVAGQLSDRLTFRILSETTVRKIFNT  337 (466)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCchHhHHHHHHh
Confidence            456677778888888888888888885 556899999999999999999999999999999998652        22 22


Q ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhc-ccchHhHHHHHHhcCCCCchhhHHHHHHhhhhhHHHHHHhhHHHh
Q 014481          184 TGVLIWSLATALLPLLAGFMPGLVLSRVLVGIGE-GVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPI  262 (423)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~-~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l  262 (423)
                      ++....++..+++++.........+..+..+.+. |...+....-..+. .+++-+..+|+.+....+.++++|.+.+.+
T Consensus       338 i~~~~~ai~l~~l~~~~~~~~~~a~~~l~~~~~~~g~~~~Gf~~~~~~~-apq~a~~l~g~~~~~~~~~~~~~P~~vg~~  416 (466)
T KOG2532|consen  338 IAFGGPAVFLLVLAFTSDEHRLLAVILLTIAIGLSGFNISGFYKNHQDI-APQHAGFVMGIINFVGALAGFIAPLLVGII  416 (466)
T ss_pred             HHHHHHHHHHHeeeecCCCcchHHHHHHHHHHHHcccchhhhHhhhhhc-cchHHHHHHHHHHHHHHHHHHHHHHheeeE
Confidence            3334444444444333322121111122222222 23333333333333 448899999999999999999999999999


Q ss_pred             hh---ccCchHHHHHHHHHHHHHHHHHHhhc
Q 014481          263 IE---NLGWESVFYIFGLLGIAWFSGFKILQ  290 (423)
Q Consensus       263 ~~---~~gw~~~~~~~~~~~~~~~~~~~~~~  290 (423)
                      ..   ...|+++|++.+++.++..+.+.++-
T Consensus       417 ~~~~t~~eW~~VF~i~a~i~~~~~i~f~~f~  447 (466)
T KOG2532|consen  417 VTDNTREEWRIVFLIAAGILIVGNIIFLFFG  447 (466)
T ss_pred             eCCCCHHHHHHHHHHHHHHHHHhchheeEee
Confidence            94   24699999999999888776665553

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.85  E-value=1.2e-08  Score=92.03  Aligned_cols=165  Identities=16%  Similarity=0.179  Sum_probs=125.3

Q ss_pred             HHHhhhhhhhhhHHH-hhhhhCCCcchhhHHHHHHHHHHHhhhhhhhhHhhHhcCchHHH--HHHHHHHHHHHHHHHhhh
Q 014481          125 ICNMDKVNLSVAIIP-MSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQ--TGVLIWSLATALLPLLAG  201 (423)
Q Consensus       125 ~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~--~~~~~~~~~~~~~~~~~~  201 (423)
                      .........-|.++. +.+.+..+..+.|+.+--..+.+.++..+.|.+.||++.-+++.  .+++..++..... -+.+
T Consensus       281 ~~n~~lafLePtlslwm~e~m~~p~w~~G~~fLp~~~~y~ig~~lfg~la~k~~~~~wl~~~~gl~~~G~~~~~i-P~~~  359 (464)
T KOG3764|consen  281 FSNSSLAFLEPTLSLWMLETMFTPGWEVGLAFLPASLSYAIGTNLFGKLADKYPHLRWLLSLGGLATVGVSSGPI-PFAT  359 (464)
T ss_pred             hccchHHHhCcccHHHHHHhccCCCcceeeeecccccchhccCchHHHHHHhcCchhHHHHHHHHHHHHHHhchh-Hhhh
Confidence            344555566666666 66777866779999999999999999999999999999444333  3333433333333 3557


Q ss_pred             HHHHHHHHHHHHHhhcccchHhHHHHHHhcCCCC------chhhHHHHHHhhhhhHHHHHHhhHHHhhhccCchHHHHHH
Q 014481          202 FMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLE------ERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIF  275 (423)
Q Consensus       202 ~~~~~~~~~~l~G~~~~~~~~~~~~~i~~~~~~~------~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw~~~~~~~  275 (423)
                      ++..+++-++..|++.+..............+.+      ..|...++...++++|..+||.++|.+.+..|++|...+.
T Consensus       360 ~~~~L~vp~~~l~~~i~~~dasl~P~l~~lvd~rh~s~~~vYGsVyaIad~a~sla~a~GP~~gg~iv~~iGF~wl~~ii  439 (464)
T KOG3764|consen  360 SIAQLWVPNFGLGFGIGLADASLIPTLGYLVDPRHVSGFNVYGSVYAIADAAFSLAYAIGPTFGGSLVEAIGFEWLMTII  439 (464)
T ss_pred             hHHHHhhhhHHHHHHHHHHHHHHhhhhHHhcchhhccccceeeeHHHHHHHHHHHhhhccccccchheeehhHHHHHHHH
Confidence            7788888888888888877777666666666433      3578999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhc
Q 014481          276 GLLGIAWFSGFKILQ  290 (423)
Q Consensus       276 ~~~~~~~~~~~~~~~  290 (423)
                      ++..++...+..++.
T Consensus       440 g~~n~iyapvl~ll~  454 (464)
T KOG3764|consen  440 GILNLIYAPVLLLLR  454 (464)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999888765555543

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=98.85  E-value=2e-07  Score=88.57  Aligned_cols=126  Identities=16%  Similarity=0.029  Sum_probs=94.3

Q ss_pred             hhhhhCCCcchhhHHHHHHHHHHHhhhhhhhhHhhHhcCchHHHHHHHHHHHHHHHHHHh--hhHHHHHHHHHHHHHhhc
Q 014481          140 MSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLL--AGFMPGLVLSRVLVGIGE  217 (423)
Q Consensus       140 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~G~~~  217 (423)
                      +.+.+|.+..+.+++.....++..++.++.+++.||++++........+.+.........  ..+.+.+++..++.|++.
T Consensus       234 ~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  313 (394)
T PRK11652        234 MGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLMWQSVICCLLAGLLMWIPGWFGVMNVWTLLVPAALFFFGA  313 (394)
T ss_pred             HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHH
Confidence            444589999999999999999999999999999999984333222222222111111111  224456777788899999


Q ss_pred             ccchHhHHHHHHhcCCCCchhhHHHHHHhhhhhHHHHHHhhHHHhhhcc
Q 014481          218 GVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENL  266 (423)
Q Consensus       218 ~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~  266 (423)
                      +...+...++..+.+| ++++.+.++.+....+|..+++.+++.+....
T Consensus       314 ~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~lg~~~~~~~~~~~~~~~  361 (394)
T PRK11652        314 GMLFPLATSGAMEPFP-YLAGTAGALLGGLQNIGSGLAALLSAMLPQTG  361 (394)
T ss_pred             HHHHHHHHHHHHhhcc-ccchHHHHHHHHHHHHHHHHHHHHHHHccCCc
Confidence            9999999999999887 68899999999999999999999999886653

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=98.80  E-value=1.2e-07  Score=89.17  Aligned_cols=152  Identities=16%  Similarity=0.140  Sum_probs=118.3

Q ss_pred             HHHHHHHHHHHHhhhhhhhhhHHHhhh-hhCCCcchhhHHHHHHHHHHHhhhhhhhhHhhHhcCchHHHHHHHHHHHHHH
Q 014481          116 IGTTSLAFVICNMDKVNLSVAIIPMSH-RFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATA  194 (423)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~  194 (423)
                      +...++..++......+.+....++.+ .+|.++....+.......+..++.+++.++.+|+|+|+++.++.++.+++.+
T Consensus       238 ~~~~l~~~l~~~~~~~i~~s~~~yy~~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~i~~~  317 (467)
T COG2211         238 LLLLLLMNLLLFIAFNIRGSIMVYYVTYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYL  317 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhheeEEEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHH
Confidence            334444555666666666666666443 3566677777788888888888899999999999999999999999999988


Q ss_pred             HHHHhh-hHHHHHHHHHHHHHhhcccchHhHHHHHHhcCCC-------CchhhHHHHHHhhhhhHHHHHHhhHHHhhhcc
Q 014481          195 LLPLLA-GFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPL-------EERSRAVSFVFGGLSFGSVAGLLLAPPIIENL  266 (423)
Q Consensus       195 ~~~~~~-~~~~~~~~~~~l~G~~~~~~~~~~~~~i~~~~~~-------~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~  266 (423)
                      +..+.. ++.+.+++..++.++|.+...+...++++|..+-       +.-|...+.+....-+|..++..+.|++....
T Consensus       318 ~~~f~~~~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~~g~~L~~~  397 (467)
T COG2211         318 LLYFTPAGSVVLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFIPGWILGAI  397 (467)
T ss_pred             HHHhhcCcchHHHHHHHHHHHHHhhccccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            775444 4567788888999999999999999999888742       33467788888888899999998888887655


Q ss_pred             C
Q 014481          267 G  267 (423)
Q Consensus       267 g  267 (423)
                      |
T Consensus       398 G  398 (467)
T COG2211         398 G  398 (467)
T ss_pred             C
Confidence            4

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=98.80  E-value=3.1e-08  Score=93.07  Aligned_cols=120  Identities=17%  Similarity=0.123  Sum_probs=88.2

Q ss_pred             hhhhhhHHH-hhhhhCCCcchhhHHHHHHHHHHHhhhhhhhhHhhHhcCchHHHHHHHHHHHHHHHHHHhhh---HHHHH
Q 014481          131 VNLSVAIIP-MSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAG---FMPGL  206 (423)
Q Consensus       131 ~~~~~~~~~-~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~---~~~~~  206 (423)
                      .......|. +.+.+|.++.+.+++.+...+...++.+++|++.||+|+|+.+..+..+...+..++.....   +.+.+
T Consensus       242 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  321 (366)
T TIGR00886       242 LGVSSIFAMFFKDQFGLSKVTAGAYASLGGLLGSLARPLGGAISDRLGGARKLLMSFLGVAMGAFLVVLGLVSPLSLAVF  321 (366)
T ss_pred             HHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhhccchHHHhhccchhHHHHHHHHHHHHHHHHhcCCCcchHHHH
Confidence            334444454 45668999999999999999999999999999999999998888777666565544432222   44544


Q ss_pred             HHHHHHHHhhcccchHhHHHHHHhcCCCCchhhHHHHHHhhhhhH
Q 014481          207 VLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFG  251 (423)
Q Consensus       207 ~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g  251 (423)
                      ++..++.+++.+...+...+++++..| +++|+++|+.+...++|
T Consensus       322 ~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g  365 (366)
T TIGR00886       322 IVLFVALFFFSGAGNGSTFALVPHIFR-RATGAVSGLVGAIGNLG  365 (366)
T ss_pred             HHHHHHHHHHhccccchhhhcchhhch-hhcccHHHHHHHhccCC
Confidence            555555555556666667778888887 79999999998887776

>PRK11462 putative transporter; Provisional

Probab=98.77  E-value=2.9e-07  Score=89.19  Aligned_cols=141  Identities=7%  Similarity=-0.034  Sum_probs=92.5

Q ss_pred             hhhhhhhhhHHHhhhhhCCCcchhhHHHHHHHHHHHhhhhhhhhHhhHhcCchHHHHHHHHHHHHHHHHHHhhh-HHHHH
Q 014481          128 MDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAG-FMPGL  206 (423)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~-~~~~~  206 (423)
                      ............+.++..-++...+.+.+.+.++.+++.+++++++||+|+|+.+..+..+.++..++..+... +...+
T Consensus       242 ~~~~~~~~~~~y~~~y~~g~~~~~~~~l~~~~i~~iig~~l~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~  321 (460)
T PRK11462        242 LAVCVRGGAMMYYVTWILGTPEVFVAFLTTYCVGNLIGSALAKPLTDWKCKVTIFWWTNALLAVISLAMFFVPMQASITM  321 (460)
T ss_pred             HHHHHHHhHhhhhhhhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhchhHHHHH
Confidence            33333333334443343334445567777888889999999999999999999887655544443333322222 22334


Q ss_pred             HHHHHHHHhhcccchHhHHHHHHhcCC-------CCchhhHHHHHHhhhhhHHHHHHhhHHHhhhccCc
Q 014481          207 VLSRVLVGIGEGVSPSAATDLIARSIP-------LEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGW  268 (423)
Q Consensus       207 ~~~~~l~G~~~~~~~~~~~~~i~~~~~-------~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw  268 (423)
                      ++.-++.|++.+...+...++++|..+       .+.-|..++.......+|..+|+.++|.+.+..|+
T Consensus       322 ~~~~~l~g~~~~~~~~l~~~m~ad~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~i~g~iL~~~Gy  390 (460)
T PRK11462        322 FVFIFVIGVLHQLVTPIQWVMMSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGALIGWMLAYGGY  390 (460)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            455566788777777767778887765       33345556777788999999999999988866554

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=98.77  E-value=4.6e-07  Score=82.98  Aligned_cols=171  Identities=19%  Similarity=0.145  Sum_probs=128.1

Q ss_pred             HHHHHHHHHHHHHHHhhhhhhhhhHHHhhhhhCCCcchhhHHHHHHHHHHHhhhhhhhhHhh-HhcCchHHHHHHHHHHH
Q 014481          113 YKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAK-IFGGRKVLQTGVLIWSL  191 (423)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d-r~G~r~~~~~~~~~~~~  191 (423)
                      ++.+..+++..+...+...+.-   |+=.+-||++..+...+......|..++-...|++.. |.++++...+++.+..+
T Consensus       211 ~~f~~fl~l~t~a~~~QD~iLE---Pygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~  287 (403)
T PF03209_consen  211 RRFFVFLFLGTLAFFMQDVILE---PYGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGAL  287 (403)
T ss_pred             hHHHHHHHHHHHHHHhhHHHcC---CchhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHH
Confidence            3444444444443333333322   3344568999999999999999999999999999877 67888888788777666


Q ss_pred             HHHHH--HHhhhHHHHHHHHHHHHHhhcccchHhHHHHHHhcCCCCchhhHHHHHHhhhhhHHHHHHhhHHHhhhc----
Q 014481          192 ATALL--PLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIEN----  265 (423)
Q Consensus       192 ~~~~~--~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~----  265 (423)
                      +..+.  +....+.+.+...-++.|++.|.......+.+-+...+++.|..+|.+.....++..+|..++|.+.|.    
T Consensus       288 ~f~lii~a~~~~~~~~~~~~~~l~G~g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~~~~  367 (403)
T PF03209_consen  288 AFALIILAGPLGSPWLFRPGVFLLGLGNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDLVRAL  367 (403)
T ss_pred             HHHHHHHHHhcccchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            65443  233355678889999999999999999999999999999999999999999999999999999988763    


Q ss_pred             ------cCchHHHHHHHHHHHHHHHHH
Q 014481          266 ------LGWESVFYIFGLLGIAWFSGF  286 (423)
Q Consensus       266 ------~gw~~~~~~~~~~~~~~~~~~  286 (423)
                            .+|..+|.+.++..++.+.+.
T Consensus       368 ~~~~~~~aY~~VF~lEa~ll~~a~~ll  394 (403)
T PF03209_consen  368 FGNSPALAYGVVFALEAVLLLAALVLL  394 (403)
T ss_pred             ccCCcchHHHHHHHHHHHHHHHHHHHH
Confidence                  235556666666555544443

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.77  E-value=6.5e-07  Score=84.27  Aligned_cols=237  Identities=19%  Similarity=0.139  Sum_probs=149.6

Q ss_pred             hhHH-HHHHHHHHHhhhhhhhhHhhHhcCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcccchHhHHHHHH
Q 014481          151 AGLV-QSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIA  229 (423)
Q Consensus       151 ~~~~-~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~i~  229 (423)
                      .|.. .++......+..++.+.+.|+.|+|..++++..++....+.+  +-.|-+.+++.-.+.|+|.+..+.....+++
T Consensus        51 aGy~~~aiiY~~ftv~~l~~psiv~~i~~K~~lv~ga~~y~~f~~gf--l~~N~y~~yfssallG~Gaallw~GqG~ylt  128 (461)
T KOG3098|consen   51 AGYYGQAIIYAFFTVSCLFAPSIVNFLGPKWALVIGATCYAAFPLGF--LFPNSYYLYFSSALLGFGAALLWTGQGGYLT  128 (461)
T ss_pred             ccHHHHHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHhHHHHHHHHHH--HhcchHHHHHHHHHhhhhHHheecccceehh
Confidence            3443 667778888999999999999999999999999988776655  3344478899999999999999999999999


Q ss_pred             hcCCCCchhhHHHHHHhhhhhHHHHHHhhHHHhhhcc--------Cch-HH-------HHH---HHHHHHH---HHHHHH
Q 014481          230 RSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENL--------GWE-SV-------FYI---FGLLGIA---WFSGFK  287 (423)
Q Consensus       230 ~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~--------gw~-~~-------~~~---~~~~~~~---~~~~~~  287 (423)
                      +..+++.+.+..++.......+.++|..+...+....        +-+ +.       +.+   .+++..+   ..+...
T Consensus       129 ~~st~~tie~Nisi~Wai~~~~li~Ggi~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~~~~~l~~i~~~  208 (461)
T KOG3098|consen  129 SNSTRETIERNISIFWAIGQSSLIIGGIILFIYFQFSSSSAIITDGTRRLVFEVLFIDFEIKVLFGVLLAISVLSIINFD  208 (461)
T ss_pred             hcCChhhHHHHHHHHHHHHHHHHHhhhHhheeeeEecccccccccchhhhhcchhhhhHHHHHHHHHHHHHHHHHhhhee
Confidence            9999999999999999888888888876654443211        111 11       111   1111111   111111


Q ss_pred             hhccCCcCcCCCCCcchhhhhhhhhhhhhHHhhccccCCCcHHHhhhcHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHh-
Q 014481          288 ILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEE-  366 (423)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-  366 (423)
                      +.|.+......+.. +       ....+...         ..-+++++++++.+....+..++.........|..+.-. 
T Consensus       209 ~~p~~~~~~~~~~~-~-------~~~~~~l~---------~~~~l~~~~~ml~L~~~f~~tG~~~Sf~~~iypt~i~ft~  271 (461)
T KOG3098|consen  209 FLPSKDVVNCKSSS-E-------TSFSELLK---------LTFKLLKTPKMLLLFPFFFYTGLETSFWISIYPTCISFTR  271 (461)
T ss_pred             ecCccchhhhhhhc-c-------ccHHHHHH---------HHHHHhcCHhHHHHHHHHHHHHHHHHHHHhccchhhhhhh
Confidence            11111110000000 0       00000000         123567788888777777766665555555666554432 


Q ss_pred             -hCCC-hhhHHHHHHHHHHHHHHHHHHHHHHhHHhhhcCCcc
Q 014481          367 -LSLN-LTEAAWVSILPPLASVLVTSIAAQFADNLIATGVET  406 (423)
Q Consensus       367 -~g~s-~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~r~~~~  406 (423)
                       .+.+ ....++.....+++.+++....+.+.+|.++.+...
T Consensus       272 ~~~~n~~~~~ai~~~~~g~g~v~~g~~~~~l~~rir~fg~~~  313 (461)
T KOG3098|consen  272 KLGSNTTYLIAIYSIGIGLGEVIGGLDFSILSKRIRGFGRKP  313 (461)
T ss_pred             hccCcchhHHHHHHHHHhHHHHHHHHHHHHHhhhhhhcccCc
Confidence             2222 233455667777888888888888888877665544

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=98.76  E-value=6.5e-09  Score=95.31  Aligned_cols=181  Identities=13%  Similarity=0.065  Sum_probs=130.6

Q ss_pred             HHHHHHHHHHHHHHhhhhhhhhhHHHhhhhhCCCcchhhH--------HHHH-HHHHHHhhhhhhhhHhhHhcCchHHHH
Q 014481          114 KLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGL--------VQSS-FFWGYALSQLPGGWLAKIFGGRKVLQT  184 (423)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~--------~~~~-~~~~~~~~~~~~g~l~dr~G~r~~~~~  184 (423)
                      +.++..+...|+.-+..+..+.....+.+.+|+.+.....        ...+ ...++..+-.+...++|+.|||++.+.
T Consensus       304 ~~Llgt~~~WFllDiafy~~nL~~s~I~~~ig~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~iGRk~iq~~  383 (538)
T KOG0252|consen  304 KHLLGTAGTWFLLDIAFYGQNLFQSVIFSAIGVIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDIIGRKYIQLM  383 (538)
T ss_pred             HHHHHHHHHHHhhhhhhhccccHHHHHHHhhccCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeehhhhHHHHHh
Confidence            4555666667766666666666777787877766554333        1122 223333466778889999999999999


Q ss_pred             HHHHHHHHHHHHHHhhhH----HHHHH----HHHHHHHhhcccchHhHHHHHHhcCCCCchhhHHHHHHhhhhhHHHHHH
Q 014481          185 GVLIWSLATALLPLLAGF----MPGLV----LSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGL  256 (423)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~----~~~~~----~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~  256 (423)
                      +.+++++..+..+ ...+    ...++    +..++.-+|=.   .....+-+|.+|.+-|++..|+.....-+|+++|.
T Consensus       384 GF~~~~i~~~~~~-~~y~~~~~~~Gf~v~y~l~~ff~NFGPn---~ttfivpaE~FParvR~t~hGIsAA~GK~GAivg~  459 (538)
T KOG0252|consen  384 GFFIMTIFFFVIA-GPYNQLENTIGFVVLYSLTFFFGNFGPN---ATTFIVPAEIFPARVRSTCHGISAASGKAGAIVGA  459 (538)
T ss_pred             hHHHHHHHHHHHc-CCcccccccCceeehHHHHHHHHhcCCC---ceeEEeehhhchHHHhhhhhhHHHHhccchHHHHH
Confidence            9999998887764 3322    11222    33333334322   23345668999999999999999999999999999


Q ss_pred             hhHHHhhh-----ccCchHHHHHHHHHHHHHHHHHHhhccCCcCcCC
Q 014481          257 LLAPPIIE-----NLGWESVFYIFGLLGIAWFSGFKILQEGETSNGA  298 (423)
Q Consensus       257 ~~~~~l~~-----~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (423)
                      ..-.++.+     ..|.++++++.+.+.++..+..+++||+..+...
T Consensus       460 ~~F~~~t~~~yp~~~g~~~v~~i~~~~~~~gi~~T~l~pEtk~~~le  506 (538)
T KOG0252|consen  460 FGFLYLTDHNYPPNIGVRNVFIILAGCMLLGILFTLLIPETKGKSLE  506 (538)
T ss_pred             HHhhHhhhccCCccccchHHHHHHHHHHHHhHheeEEeecccccCHH
Confidence            99999998     6789999999999999998888899977655433

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=98.72  E-value=5.2e-07  Score=81.98  Aligned_cols=164  Identities=19%  Similarity=0.170  Sum_probs=126.6

Q ss_pred             HHHHHHHHHHHHhhhhhhhhhHHHhhhh-hCCCcchhhHHHHHHHHHHHhhhhhhhhHhhHhcCchHHHHHHHHHHHHHH
Q 014481          116 IGTTSLAFVICNMDKVNLSVAIIPMSHR-FGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATA  194 (423)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~  194 (423)
                      +....++.++...........++.+.++ .|.+..+.....+.+..+.++|.+++.++..|+...|.+.+..++..+.++
T Consensus       238 ~~~gvl~~FlYVG~Eva~gsfl~~y~~~~~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~~~~~k~Laf~a~~~ill~~  317 (422)
T COG0738         238 LRLGVLAIFLYVGAEVAIGSFLVSYLEELLGLNEQQAAYYLSFFWVGFMVGRFIGSALMSRIKPEKYLAFYALIAILLLL  317 (422)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHH
Confidence            3445555566666666777777776666 888999999999999999999999999999999999999888766555554


Q ss_pred             HHHHhhhHHHHHHHHHHHHHhhcccchHhHHHHHHhcCCCCchhhHHHHHHhhhhhHHHHHHhhHHHhhhccCchHHHHH
Q 014481          195 LLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYI  274 (423)
Q Consensus       195 ~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw~~~~~~  274 (423)
                      .. .+.++ ..-+.+.++.|+..+..+|...+...+..+  +.....|..-.+..+|+.+-|.+.|++.|..|-...+..
T Consensus       318 ~~-~l~~g-~v~~~~l~~ig~F~simfPTIfslal~~l~--~~ts~~s~~l~maivGGAiiP~l~G~i~d~~g~~~~~~~  393 (422)
T COG0738         318 AV-ALIGG-VVALYALFLIGLFNSIMFPTIFSLALKNLG--EHTSVGSGLLVMAIVGGAIIPPLQGVIADMFGIQLTFLI  393 (422)
T ss_pred             HH-HHhcC-hHHHHHHHHHHHHhHHHHHHHHHHHHhccC--ccccccceeeeeheecchHHHHHHHHHHHhhhhHHHHHH
Confidence            44 45565 444556688899999999999999999998  444555666667788999999999999999998877774


Q ss_pred             HHHHHHHHH
Q 014481          275 FGLLGIAWF  283 (423)
Q Consensus       275 ~~~~~~~~~  283 (423)
                      ...++.+..
T Consensus       394 ~pllc~lyV  402 (422)
T COG0738         394 VPLLCYLYV  402 (422)
T ss_pred             HHHHHHHHH
Confidence            444444433

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=98.72  E-value=5.8e-07  Score=87.96  Aligned_cols=136  Identities=15%  Similarity=0.033  Sum_probs=100.9

Q ss_pred             hhHHHHHHHHHHHhhhhhh----hhHhhHhcCchHHHHHHHHHHHHHHHHHHhhh--------HHHHHHHHHHHHHhhcc
Q 014481          151 AGLVQSSFFWGYALSQLPG----GWLAKIFGGRKVLQTGVLIWSLATALLPLLAG--------FMPGLVLSRVLVGIGEG  218 (423)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~----g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~l~G~~~~  218 (423)
                      .+++.++..+...+..++.    +++.+|++..+.+.+++++.+++.+.......        +.++++...++.|+|..
T Consensus       318 ~~~~~s~n~i~iil~~p~~~~~~~~l~~r~~~~~~~~~G~~l~~l~f~~l~~~~~~~~~~~~vs~~~~~~~~~l~~~ge~  397 (500)
T PRK09584        318 PEQYQALNPFWIMIGSPILAAIYNKMGDRLPMPHKFAIGMVLCSGAFLVLPLGAKFANDAGIVSVNWLIASYGLQSIGEL  397 (500)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHhCcCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHHHH
Confidence            5677777777777776666    55555566667888888998888877643322        14578889999999999


Q ss_pred             cchHhHHHHHHhcCCCCchhhHHHHHHhhhhhHHHHHHhhHHHhhh----------ccCchHHHHHHHHHHHHHHHHH
Q 014481          219 VSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIE----------NLGWESVFYIFGLLGIAWFSGF  286 (423)
Q Consensus       219 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~----------~~gw~~~~~~~~~~~~~~~~~~  286 (423)
                      ...|...+++.+..|++.||+++|++.....+|..++..+.+....          ..+..+.|...++.+++..++.
T Consensus       398 ~~~p~g~s~~~~~aP~~~rg~~~g~~~l~~a~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~a~~~  475 (500)
T PRK09584        398 MISGLGLAMVAQLVPQRLMGFIMGSWFLTTAGAALIAGYVANLMAVPDNVTDPLMSLEVYGRVFLQIGIATAVIAVLM  475 (500)
T ss_pred             HHhHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999988888888777766653221          1135677877777765544333

>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans

Probab=98.62  E-value=2.3e-06  Score=68.79  Aligned_cols=109  Identities=16%  Similarity=0.131  Sum_probs=91.5

Q ss_pred             HHHHHHHHHHHhhhhhhhhHhhHhcCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcccchHhHHHHHHhcC
Q 014481          153 LVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSI  232 (423)
Q Consensus       153 ~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~i~~~~  232 (423)
                      .-.++......+..++...+.+++|.|+.++++.+++.+-....  +-.+.+.++.+-++.|++.+..+++...++.+..
T Consensus        41 ~slai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~--~~~~~~~l~~~s~l~G~~~a~lW~aqg~ylt~~s  118 (156)
T PF05978_consen   41 YSLAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIASF--FYPNSYTLYPASALLGFGAALLWTAQGTYLTSYS  118 (156)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHH--HhhhHHHHHHHHHHHhhhhHHhhHhhhHHHHHcC
Confidence            34455666677888888999999999999999999987655443  4455688899999999999999999999999999


Q ss_pred             CCCchhhHHHHHHhhhhhHHHHHHhhHHHhh
Q 014481          233 PLEERSRAVSFVFGGLSFGSVAGLLLAPPII  263 (423)
Q Consensus       233 ~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~  263 (423)
                      +++++++..+++......+.++|.++.-.+.
T Consensus       119 ~~~~~~~~~~ifw~i~~~s~i~G~~~~~~~~  149 (156)
T PF05978_consen  119 TEETIGRNTGIFWAIFQSSLIFGNLFLFFIF  149 (156)
T ss_pred             CHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999989888887765553

UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].

>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism]

Probab=98.62  E-value=2.5e-06  Score=76.67  Aligned_cols=261  Identities=13%  Similarity=0.077  Sum_probs=158.9

Q ss_pred             HHHHHHHHHHHHHHHhhhhhhhhhHHHhhhhhCCCcchhhHHHHHHHHHHHhhhhhhhhHhh-----HhcCchHHHHH-H
Q 014481          113 YKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAK-----IFGGRKVLQTG-V  186 (423)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d-----r~G~r~~~~~~-~  186 (423)
                      ++.+..+.+.+.+++.-..... .+|.+.+.-|.|.++.+....++. . ...-++|.++.|     |+||||..++- .
T Consensus        30 ~~~illLl~LYllQGiP~GL~~-~iP~lL~ak~vSyt~~a~fS~ay~-P-~sLKllWaPiVDs~y~k~~GrrksWvvp~q  106 (510)
T KOG3574|consen   30 RSSILLLLFLYLLQGIPLGLIG-AIPLLLQAKGVSYTSQAIFSFAYW-P-FSLKLLWAPIVDSVYSKRFGRRKSWVVPCQ  106 (510)
T ss_pred             hhhHHHHHHHHHHcCCchhHhh-hhHHHhcCCCcchhhhhhhhhhhh-H-HHHHHHHHhhhHHHHHHhhccccceeeehH
Confidence            4556667777888888777777 899988888888877765543322 1 134577889999     99999987653 3


Q ss_pred             HHHHHHHHHHHHhh----------hHHHHHHHHHHHHHhhcccchHhHHHHHHhcCCCCchhhHHHHHHhhhhhHHHHHH
Q 014481          187 LIWSLATALLPLLA----------GFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGL  256 (423)
Q Consensus       187 ~~~~~~~~~~~~~~----------~~~~~~~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~  256 (423)
                      .+.+..+.+++...          ++...+....++.-+..+....+...+.-.+..+++.|.+......+...|..+|.
T Consensus       107 ~llG~~mllLs~~v~~~~g~ng~~p~v~~lt~~f~LLnflaAtQDIAVDgwALtmLs~e~lgyaST~q~Vg~~~GyfL~~  186 (510)
T KOG3574|consen  107 YLLGLFMLLLSYLVDRGLGGNGGLPNVVALTLLFLLLNFLAATQDIAVDGWALTMLSRENLGYASTCQSVGQTAGYFLGN  186 (510)
T ss_pred             HHHHHHHHHHhhCCCcccccCCCCcchHHHHHHHHHHHHHHhhhhhhhhHHHHHhcCHhhcCchhHHHHHHHhhhHHhhc
Confidence            33333333332221          12223333445666777777788888888888888988888877777777777776


Q ss_pred             hhHHHhhh-------ccCc---------hHHHHHHHHHHHHHHHHHHhhccCCcCcCCCCCcchhhhhhhhhhhhhHHhh
Q 014481          257 LLAPPIIE-------NLGW---------ESVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEM  320 (423)
Q Consensus       257 ~~~~~l~~-------~~gw---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (423)
                      .+.-.+..       ..+|         ...+++.+.+.++...+..+..++++....    ++......+..       
T Consensus       187 ~ifLaL~s~dF~N~y~rs~P~~~g~ItL~gy~~fwg~~~~vat~Lv~~~kke~~~~~~----~e~~~~i~~~y-------  255 (510)
T KOG3574|consen  187 VVFLALESPDFCNTYLRSIPLDQGFITLAGYLWFWGALFIVATTLVALLKKENDESVD----EELELGIHESY-------  255 (510)
T ss_pred             ceeeEecChhhhhHHHhcCcCccceEEhhHHHHHHHHHHHHHHHHHHHhcCCCchhhh----hhhhcCHHHHH-------
Confidence            55433322       1122         234555666666655454454444332211    11111111100       


Q ss_pred             ccccCCCcHHHhhhcHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhhCCChhhHHHHHHHHHHHHHHHHHHHHH
Q 014481          321 GESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQ  394 (423)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~  394 (423)
                            .-++++++-|.+..++......-.++.+.....+.-+.| +|++....++...+..-.+++.....|.
T Consensus       256 ------k~l~~vLklk~v~~la~i~lt~K~gf~a~da~t~LkLle-~Gv~ke~Lal~~v~~~plqI~l~~~~gk  322 (510)
T KOG3574|consen  256 ------KLLRDVLKLKSVRWLAGILLTGKLGFQAADALTSLKLLE-HGVPKEELALIAVPLVPLQIALPLYIGK  322 (510)
T ss_pred             ------HHHHHHHcCccHHHHHHHHHHHHHHhhhhhhccchHHHH-cCCChhHheeeeeehhhHHHhhhhhhee
Confidence                  014567777888777777777888888888888888887 5999888776554433344443333333

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=98.61  E-value=1.6e-06  Score=84.43  Aligned_cols=138  Identities=14%  Similarity=0.040  Sum_probs=104.2

Q ss_pred             hhHHHHHHHHHHHhhhhhhhhHhhHhcCchH-------HHHHHHHHHHHHHHHH-----Hh----hhHHHHHHHHHHHHH
Q 014481          151 AGLVQSSFFWGYALSQLPGGWLAKIFGGRKV-------LQTGVLIWSLATALLP-----LL----AGFMPGLVLSRVLVG  214 (423)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~-------~~~~~~~~~~~~~~~~-----~~----~~~~~~~~~~~~l~G  214 (423)
                      .+++.+...+...+..++.+++.||+++|+.       +.+|+++.+++.+..+     ..    ..+.++++...++.|
T Consensus       311 ~~~~~~~n~~~iii~~pl~~~l~~rl~~r~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g  390 (489)
T PRK10207        311 PVSFQALNPFWVVVASPILAGIYTHLGSKGKDLSMPMKFTLGMFLCSLGFLTAAAAGMWFADAQGLTSPWFIVLVYLFQS  390 (489)
T ss_pred             HHHHHhHhHHHHHHHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHH
Confidence            3566667777888899999999999999974       6777777666654321     11    124567778889999


Q ss_pred             hhcccchHhHHHHHHhcCCCCchhhHHHHHHhhhhhHHHHHHhhHHHhhh----------ccCchHHHHHHHHHHHHHHH
Q 014481          215 IGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIE----------NLGWESVFYIFGLLGIAWFS  284 (423)
Q Consensus       215 ~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~----------~~gw~~~~~~~~~~~~~~~~  284 (423)
                      +|.+...+...+++.+..|++.++.++|++.....+|..+|..++.....          .....+.|...++.+++..+
T Consensus       391 ~Ge~~~~~~g~~~~~~~aP~~~~g~~~g~~~l~~~ig~~lg~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~v  470 (489)
T PRK10207        391 LGELFISALGLAMIAALVPQHLMGFILGMWFLTQAAAFLLGGYVATFTAVPDNITDPLETLPVYTNVFGKIGLVTLGVAV  470 (489)
T ss_pred             HHHHHHhHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999888865521          01245667777766665544


Q ss_pred             HHHh
Q 014481          285 GFKI  288 (423)
Q Consensus       285 ~~~~  288 (423)
                      +++.
T Consensus       471 ~~~~  474 (489)
T PRK10207        471 VMAL  474 (489)
T ss_pred             HHHH
Confidence            4443

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=98.57  E-value=2.2e-06  Score=84.34  Aligned_cols=183  Identities=19%  Similarity=0.109  Sum_probs=121.5

Q ss_pred             hHHHHHHHHHHHHHHHhhhhhhhhhHHHhhhhhCCCcchhhHHHHHHHHHHHhhhhhhhhHhhHhcCchHHHHHHHHHHH
Q 014481          112 RYKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSL  191 (423)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~  191 (423)
                      +++.++.+.+..+.+..+......+.+.+.+..|.+... .+...+..+...++..+...+.||+|||+.++.+...+.+
T Consensus       293 ~~~~~i~~~l~~fqq~tG~~~~~~Y~~~if~~~g~~~~~-~~~~~~~~~v~~~~t~~~~~lvd~~gRr~lll~s~~~m~~  371 (513)
T KOG0254|consen  293 RKRLIIGLLLQLFQQLTGINYVFYYSTTIFKSAGLKSDT-FLASIILGVVNFLGTLVATYLVDRFGRRKLLLFGAAGMSI  371 (513)
T ss_pred             HHHHHHHHHHHHHHHHhCCceEEeehHHHHHhcCCCCch-HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhHHHHHH
Confidence            345555666666667777777777888888888877554 5566667777778888889999999999999999999988


Q ss_pred             HHHHHHHhhhH------------HHHHHHHHHHHHhhcccchHhHHHHHHhcCCCCchhhHHHHHHhhhhhHHHHHHhhH
Q 014481          192 ATALLPLLAGF------------MPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLA  259 (423)
Q Consensus       192 ~~~~~~~~~~~------------~~~~~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~  259 (423)
                      +.++++.....            +..+....+.......+..+....+.+|.+|.+-|+++.++......+...+-....
T Consensus       372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~g~g~v~w~~~sEifp~~~r~~~~s~~~~~n~~~~~~v~~~~  451 (513)
T KOG0254|consen  372 CLVILAVVGVFALYYPNSSKGAGWLAIVFLCLFIFSFAIGWGPVPWVIVSEIFPLRLRSKGASLAVAVNWLWNFLISFFF  451 (513)
T ss_pred             HHHHHHHHHHHhccCCCcccchhHHHHHHHHHHHHHHhcccccchhhhhhccCcHhHHhhhHHHHHHHHHHHHHHHHHHH
Confidence            88766433211            112222222222333344466667899999999999999997777666655554444


Q ss_pred             HHhhhccCchHHHHHHHHHHHHHHH--HHHhhccCCcC
Q 014481          260 PPIIENLGWESVFYIFGLLGIAWFS--GFKILQEGETS  295 (423)
Q Consensus       260 ~~l~~~~gw~~~~~~~~~~~~~~~~--~~~~~~~~~~~  295 (423)
                      ..+.+..++...|...+....+..+  ..+++||++..
T Consensus       452 ~~~~~~~~~~~~f~~f~~~~~~~~~~fv~~~~pETkg~  489 (513)
T KOG0254|consen  452 PFITEALGIGGTFGYFGGICLLSLIIFVFFFVPETKGL  489 (513)
T ss_pred             HHHHHhccccchHHHHHHHHHHHHHHHheEEcccCCCC
Confidence            4444443445566666555554433  55566776543

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=98.56  E-value=3.9e-06  Score=80.26  Aligned_cols=156  Identities=12%  Similarity=-0.012  Sum_probs=100.5

Q ss_pred             HHHhhhhhhhhhHHHh-hhhhCCCcchhhHHHHHHHHHHHhhhhhhhhHhhHhcCchHHHHHHHHHHHHHHHHHH----h
Q 014481          125 ICNMDKVNLSVAIIPM-SHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPL----L  199 (423)
Q Consensus       125 ~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~----~  199 (423)
                      +.......+....|.+ .+.+|.+..+.++.......+..++..+.+++.++.++++.+.....+..++.++...    .
T Consensus       229 ~~~~~~~~~~~~~P~~l~~~~g~s~~~~gl~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ig~~l~~~~~~~~  308 (413)
T PRK15403        229 LSYIPMMSWVAVSPVILIDAGGMTTSQFAWTQVPVFGAVIVANAIVARFVKDPTEPRFIWRAVPIQLVGLALLIVGNLLW  308 (413)
T ss_pred             HHHHHHHHHHHhChHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHc
Confidence            3333334454556654 4556999999999988888888888888888775554444433222222222222211    2


Q ss_pred             hhHHHHHHHHHHHHHhhcccchHhHHHHHHhcCCCCchhhHHHHHHhhhhhHHHHHHhhHHHhhhccCchHHHHHHHHHH
Q 014481          200 AGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLG  279 (423)
Q Consensus       200 ~~~~~~~~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw~~~~~~~~~~~  279 (423)
                      .++++..++..++.++|.+...+......- .-....+|++.++.+.....+..+++.+++++.+. +-.+.|...+++.
T Consensus       309 ~~~~~~~~~~~~l~~~G~~~~~p~~~~~al-~~~~~~~G~a~a~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~  386 (413)
T PRK15403        309 PHVWLWSVLGTSLYAFGIGLIFPTLFRFTL-FSNNLPKGTVSASLNMVILMVMAVSVEIGRWLWFN-GGRLPFHLLAVVA  386 (413)
T ss_pred             cccHHHHHHHHHHHHHHHHHHhHHHHHHHh-ccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCchHHHHHHHHH
Confidence            334334567778888888887777664332 11223589999999999999999999999988766 5566776666555


Q ss_pred             HHH
Q 014481          280 IAW  282 (423)
Q Consensus       280 ~~~  282 (423)
                      .+.
T Consensus       387 ~~~  389 (413)
T PRK15403        387 GVI  389 (413)
T ss_pred             HHH
Confidence            443

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=98.55  E-value=3.2e-06  Score=81.14  Aligned_cols=178  Identities=10%  Similarity=-0.012  Sum_probs=125.3

Q ss_pred             HHHHHHHHHHHHHhhhhhhhhhHHH-hhh-hhCCCcc------h----hhHHHHHHHHHHHhhhhhhhhHhhHhcC-chH
Q 014481          115 LIGTTSLAFVICNMDKVNLSVAIIP-MSH-RFGWNSS------V----AGLVQSSFFWGYALSQLPGGWLAKIFGG-RKV  181 (423)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~s~~------~----~~~~~~~~~~~~~~~~~~~g~l~dr~G~-r~~  181 (423)
                      .+..+++.+++.+++...+..+... +.+ .|+.++.      +    -.+....+.+...+.+++.-++.+|+|+ |++
T Consensus       259 ~m~~l~~vqffsW~a~f~~~~y~T~~vg~~v~~~~~~~~~~y~~gvr~G~~~l~~~s~~~~i~s~~l~~l~~~~g~~k~~  338 (477)
T TIGR01301       259 PVWILLLVTCLNWIAWFPFILFDTDWMGREVYGGSVNQGAKYDDGVRAGAFGLMLNSVVLGITSIGMEKLCRGWGAGKRL  338 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhH
Confidence            4455666777777666665555444 332 2443221      1    2344455666666777788889999995 777


Q ss_pred             HHHHHHHHHHHHHHHHHhhh---H-----------------HHHHHHHHHHHHhhcccchHhHHHHHHhcCCC--Cchhh
Q 014481          182 LQTGVLIWSLATALLPLLAG---F-----------------MPGLVLSRVLVGIGEGVSPSAATDLIARSIPL--EERSR  239 (423)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~---~-----------------~~~~~~~~~l~G~~~~~~~~~~~~~i~~~~~~--~~r~~  239 (423)
                      ..++.++.+++.+...+.+.   +                 .+..++...+.|+..+......++++++..++  ++.|.
T Consensus       339 ~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Gi~~A~~~siPfal~s~~~~~~~~~~G~  418 (477)
T TIGR01301       339 WGIVNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASALIVFAILGIPLAITYSIPFALASIRSSNLGAGQGL  418 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhccccccccccccCcchhhHHHHHHHHHHhhHHHHHHHHHhHHHHHHHccccCCCCcc
Confidence            78888887777766643332   1                 26677788899999999999999999999984  45699


Q ss_pred             HHHHHHhhhhhHHHHHHhhHHHhhhccC--chHHHHHHHHHHHHHHHHHH-hhccC
Q 014481          240 AVSFVFGGLSFGSVAGLLLAPPIIENLG--WESVFYIFGLLGIAWFSGFK-ILQEG  292 (423)
Q Consensus       240 ~~~~~~~~~~~g~~~g~~~~~~l~~~~g--w~~~~~~~~~~~~~~~~~~~-~~~~~  292 (423)
                      .+|+++.+..+..++..+..|.+.+..|  -.+++.+.++..++..+..+ .+|++
T Consensus       419 ~mgilN~~I~lpQii~sl~~g~~~~~~g~~~~~~~~~~gv~~~~aa~~~~~~~~~~  474 (477)
T TIGR01301       419 SMGVLNLAIVIPQIIVSLGSGPWDQLFGGGNLPAFVVGAVAAFVSGLLALILLPRP  474 (477)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCeeHHHHHHHHHHHHHHHHHHhCCCC
Confidence            9999999999999999988888665544  56677888888777655554 44544

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions

Probab=98.46  E-value=0.00025  Score=68.33  Aligned_cols=279  Identities=10%  Similarity=0.015  Sum_probs=157.4

Q ss_pred             hHHHHHHHHHHHHHHHhhhhhhhhhHHHh-hhhhCCCcchhhHHHHHHHH-HHHhhhhhhhhHhhHhcCchHHHHHHHHH
Q 014481          112 RYKLIGTTSLAFVICNMDKVNLSVAIIPM-SHRFGWNSSVAGLVQSSFFW-GYALSQLPGGWLAKIFGGRKVLQTGVLIW  189 (423)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~~~~~~~~-~~~~~~~~~g~l~dr~G~r~~~~~~~~~~  189 (423)
                      .++.++.+.+.+++..+..+..-..-..+ ....  .++.+..+-....+ ...+...+..++++++++.+++-+....+
T Consensus        22 E~~k~~~l~~m~f~i~f~y~~lR~~KD~lvvt~~--gae~I~flK~~~vlP~a~~f~~~y~kl~n~~s~~~lFy~~~~~F   99 (491)
T PF03219_consen   22 ELKKFLPLALMFFFILFNYTILRDLKDTLVVTAQ--GAEVIPFLKVWGVLPVAILFTILYSKLSNRLSREKLFYIIIIPF   99 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCeEEEecC--ChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence            44555566666666555544433222211 1111  45556666554444 44455777999999999999887766555


Q ss_pred             HHHHHHHHHh--h-------h---------------------HHHHHHHHHHHHHhhcccchH-hHHHHHHhcCCCCchh
Q 014481          190 SLATALLPLL--A-------G---------------------FMPGLVLSRVLVGIGEGVSPS-AATDLIARSIPLEERS  238 (423)
Q Consensus       190 ~~~~~~~~~~--~-------~---------------------~~~~~~~~~~l~G~~~~~~~~-~~~~~i~~~~~~~~r~  238 (423)
                      .....+++++  +       +                     +.|.+.+..+..-+-.....+ .-..+.+|.++.++-.
T Consensus       100 ~~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~~~i~~~~~Wt~slfYv~aElwgsvvlSlLFW~fAN~itt~~eAK  179 (491)
T PF03219_consen  100 LGFFALFAFVLYPNRDILHPDAFADKLLAILPPGFKGFIAMFRNWTFSLFYVMAELWGSVVLSLLFWGFANEITTVEEAK  179 (491)
T ss_pred             HHHHHHHHHHHhhchhhcCCCHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHH
Confidence            5554444332  0       0                     112333333333333334344 4688999999999999


Q ss_pred             hHHHHHHhhhhhHHHHHHhhHHHhhh---------ccCchHHHHHHH-HH---HHHHHHHHHhhccCCcCcCCCCCcchh
Q 014481          239 RAVSFVFGGLSFGSVAGLLLAPPIIE---------NLGWESVFYIFG-LL---GIAWFSGFKILQEGETSNGATLAPRSN  305 (423)
Q Consensus       239 ~~~~~~~~~~~~g~~~g~~~~~~l~~---------~~gw~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (423)
                      +.++++..+.++|.+++..+..++.+         ...|...+.... ++   +++.......+.+....++... +...
T Consensus       180 RfYpl~g~ganigli~sG~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~v~~~g~~i~~~~~~~~~~vl~~~~~~-~~~~  258 (491)
T PF03219_consen  180 RFYPLFGLGANIGLIFSGQLTSYFSSFLRKSLPAGVDAWELSLNSLMGIVLILGIVIILLYRYMNKNVLTDPRFY-PSAK  258 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccccc-hhhh
Confidence            99999999999999999999888877         123554332222 22   2222222233322211111100 0000


Q ss_pred             hhhhhhhhhhhHHhhccccCCCcHHHhhhcHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhhCCChhhH---HHHHHHHH
Q 014481          306 YINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEA---AWVSILPP  382 (423)
Q Consensus       306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~---~~~~~~~~  382 (423)
                      ....         +..+..-...++.++++|.+..+++...++......+....-..+++.+.-+...+   |......+
T Consensus       259 ~~kk---------~k~k~s~~es~k~l~kS~yL~~Ia~lvi~Ygi~inLvE~~wK~~lk~~~~~~~~ysafmG~~~~~tG  329 (491)
T PF03219_consen  259 KKKK---------KKPKMSLKESFKLLLKSKYLLCIALLVIAYGISINLVEVVWKSQLKQLYPDPNDYSAFMGKFSSWTG  329 (491)
T ss_pred             cccc---------cCCCccHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHH
Confidence            0000         00000001135678899999988888888888887777766666665543332222   34455566


Q ss_pred             HHHHHHHHHHHHHhHHhhhc
Q 014481          383 LASVLVTSIAAQFADNLIAT  402 (423)
Q Consensus       383 ~~~~~~~~~~g~l~dr~~~r  402 (423)
                      +..++..++++.+.+|+|-+
T Consensus       330 ivtii~~~l~~~iir~~GW~  349 (491)
T PF03219_consen  330 IVTIIMMFLSSNIIRRFGWR  349 (491)
T ss_pred             HHHHHHHHHHHHHHHHhhHH
Confidence            66677777888888888865

One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane

>PF12832 MFS_1_like: MFS_1 like family

Probab=98.45  E-value=1.3e-06  Score=61.07  Aligned_cols=71  Identities=21%  Similarity=0.159  Sum_probs=61.4

Q ss_pred             HHHHHHHHHhhhhhhhhhHHHhhhhhCCCcchhhHHHHHHHHHHHhhhhhhhhHhhHhcCchHHHHHHHHH
Q 014481          119 TSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIW  189 (423)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~  189 (423)
                      +-..+++.+.......|+++...++.|+++.++|.+.++..+...++++++|.++||+++++.++....++
T Consensus         5 lk~~yf~~f~~~g~~~Pfl~~~~~~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~~~   75 (77)
T PF12832_consen    5 LKAFYFFYFAALGCLYPFLPLYLKQLGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSLFM   75 (77)
T ss_pred             HHHHHHHHHHHHHHHHhhhhHhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHHHH
Confidence            34456666677788888999999999999999999999999999999999999999999999887765543

>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=98.44  E-value=2.9e-07  Score=78.58  Aligned_cols=248  Identities=16%  Similarity=0.093  Sum_probs=137.9

Q ss_pred             hhhhhhhhhHHHhhhhhCCCcchhhHHHHHHHHHHHhhhhhhhhHhhHhcCchHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 014481          128 MDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLV  207 (423)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~  207 (423)
                      .+....+|+.-.+.+.+|....++|.+.....-..++...+.|.++|+-|||+.-+.-++.+.+.++ . -.++.+-.++
T Consensus        51 AgDWLQgPYvYyLYstYgFgkG~IgqLfiaGfgSsmLFGtivgSLaDkqGRKracvtycitYiLsCi-T-KhSpqYkVLm  128 (454)
T KOG4332|consen   51 AGDWLQGPYVYYLYSTYGFGKGDIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCITYILSCI-T-KHSPQYKVLM  128 (454)
T ss_pred             hhhhhcCceeeeeehhcCccCCccceeeecccchHHHHHHHHHHHHhhhccccceeeehHHHHHHHH-h-hcCCceEEEe
Confidence            3444556666677788999999999988888888888889999999999999987666555554442 2 2455667899


Q ss_pred             HHHHHHHhhcccchHhHHHH-HHhcCCCCchhhHHHHH--------HhhhhhHHHHHHhhHHHhhhccC--chHHHHHHH
Q 014481          208 LSRVLVGIGEGVSPSAATDL-IARSIPLEERSRAVSFV--------FGGLSFGSVAGLLLAPPIIENLG--WESVFYIFG  276 (423)
Q Consensus       208 ~~~~l~G~~~~~~~~~~~~~-i~~~~~~~~r~~~~~~~--------~~~~~~g~~~g~~~~~~l~~~~g--w~~~~~~~~  276 (423)
                      ++|++-|+..+..+.+.-++ +.|..  ++|+.-.-+.        ..+..+-.+++.+.+..+.+.++  --.+|-..+
T Consensus       129 VGR~LGGiaTsLLFSaFEsWliaEHn--ekr~FeqqWls~TFskA~ffgNglvAiiaGlfgn~lvd~~slGPVAPFdAAa  206 (454)
T KOG4332|consen  129 VGRVLGGIATSLLFSAFESWLIAEHN--EKRGFEQQWLSVTFSKAVFFGNGLVAIIAGLFGNLLVDTFSLGPVAPFDAAA  206 (454)
T ss_pred             ehhhhhhHHHHHHHHHHHHHHHHHhh--hccCChHhhhhHHHHHHHHhhccHHHHHHHHHHHHHHHHhccCCCCchHHHH
Confidence            99999999998887776654 44544  2343322221        12333444455555556666544  344444333


Q ss_pred             HHHHHH-HHHHHhhccCCcCcCCCCCcchhhhhhhhhhhhhHHhhccccCCCcHHHhhhcHHHHHHHHHHHHHHHHHHHH
Q 014481          277 LLGIAW-FSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTC  355 (423)
Q Consensus       277 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  355 (423)
                      .+..+. +++.--.-|......   +.++-.    .+..            ...+.+..|+++.++.....+.-...+.+
T Consensus       207 cfLaigmAvil~~W~ENygdps---~~kdll----tqf~------------gaa~aiaSD~ki~LLG~iqsLFE~smytF  267 (454)
T KOG4332|consen  207 CFLAIGMAVILSSWSENYGDPS---ENKDLL----TQFK------------GAARAIASDEKIALLGAIQSLFEGSMYTF  267 (454)
T ss_pred             HHHHHHHHHHHhhhhhccCChh---hhHHHH----HHhh------------HhHHHHhcchHHHHHHHHHHHHhhhhhee
Confidence            332222 222211222211100   000000    0000            01234455666655554444444444443


Q ss_pred             Hh-hhhHHHHHhhCCChhhHHHHHHHHHHHHHHHHHHHHHHhHHhhh
Q 014481          356 LS-WLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIA  401 (423)
Q Consensus       356 ~~-~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~  401 (423)
                      .. |.|..--+..+.   --|++++.+.++.++|.-+..++..|-..
T Consensus       268 VFLWTPaLspn~e~i---PhGfiFatFMlASmLGSSla~Rl~s~s~~  311 (454)
T KOG4332|consen  268 VFLWTPALSPNDEEI---PHGFIFATFMLASMLGSSLASRLLSRSSP  311 (454)
T ss_pred             eeeecccCCCCcccC---CchhHHHHHHHHHHHhhHHHHHHHhcCCc
Confidence            32 333322111122   23677788888888888777777665433

>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters

Probab=98.43  E-value=1.1e-06  Score=61.86  Aligned_cols=78  Identities=23%  Similarity=0.299  Sum_probs=68.5

Q ss_pred             HHhhhhhhhhhHHHhhhhhCCCcchhhHHHHHHHHHHHhhhhhhhhHhhHhcCchHHHHHHHHHHHHHHHHHHhhhHHH
Q 014481          126 CNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMP  204 (423)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~  204 (423)
                      .++++..+.+.+|.++++.++|.++.|++.+.+.+||.+|.+...++.++..+++.+..+.+...+..+.++ .+++.+
T Consensus         4 mGigRFayTplLP~M~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma-~~~~~~   81 (85)
T PF06779_consen    4 MGIGRFAYTPLLPLMQADGGLSLSQAGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMA-LTHSFW   81 (85)
T ss_pred             hhhHHHHHHhHhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHH-HHhchH
Confidence            457788999999999999999999999999999999999999999999998888999999888888877774 444433

Note that many members are hypothetical proteins.

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=98.43  E-value=5.1e-06  Score=81.19  Aligned_cols=181  Identities=15%  Similarity=0.135  Sum_probs=127.5

Q ss_pred             HHHHHHHHHHHHHHhhhhhhhhhHHHhh-hhhCCCc---chhhHHHHHHHHHHHhhhhhhhhHhhHhcCchHH-HHHHHH
Q 014481          114 KLIGTTSLAFVICNMDKVNLSVAIIPMS-HRFGWNS---SVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVL-QTGVLI  188 (423)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~s~---~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~-~~~~~~  188 (423)
                      +.+....+..++.++.......+.|... .-|+-+.   ...++....+.++..++..+.|.+..+++|-|.. +++.++
T Consensus       310 r~~~~~lvi~fi~G~~~~s~~~l~p~~~~~vf~~d~~~~~~~~~~s~~~~fg~~~g~~i~g~l~~~ir~~Kw~li~~~~~  389 (599)
T PF06609_consen  310 RGFAALLVISFISGMNFFSVNILWPQQVVNVFGSDPISITEIGWISSPVGFGSCAGAVILGLLFSKIRHIKWQLIFGSVL  389 (599)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccceeehhhhhHHHHHHHHHHHHHHHHHHccchhHHHHHHHHH
Confidence            4455555555555555555556666643 3455443   3578888889999999999999999998875554 566655


Q ss_pred             HHHHHHHHHHh-hhHHHHHHHHHHHHHhhcccchHhHHHHHHhcCCCCchhhHHHHHHhhhhhHHHHHHhhHHHhhh---
Q 014481          189 WSLATALLPLL-AGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIE---  264 (423)
Q Consensus       189 ~~~~~~~~~~~-~~~~~~~~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~---  264 (423)
                      +.++..+++.. .++....+..-++.|++.|...........-..|+++-+.+.|+....-.+|+.+|..+...+..   
T Consensus       390 ~ta~~Gama~~~~~n~~~~i~~~~l~g~giG~~~~~~~~~~ql~~p~~~ig~a~gL~~s~R~~GGsIg~aIy~~I~~n~~  469 (599)
T PF06609_consen  390 MTAFCGAMAAVRPDNKNAAIAFLVLAGFGIGGILVPAIVIAQLIVPDEDIGTATGLTGSIRSIGGSIGYAIYNAIFTNKL  469 (599)
T ss_pred             HHHHHHHHHHccCCCcchHHHHHHHHHHhHHHHHHHHHHeeEeeeCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhh
Confidence            55443333222 23444566778899999988888877777777898999999999999999999888876544321   


Q ss_pred             -----------------------------------------------------------ccCchHHHHHHHHHHHHHHHH
Q 014481          265 -----------------------------------------------------------NLGWESVFYIFGLLGIAWFSG  285 (423)
Q Consensus       265 -----------------------------------------------------------~~gw~~~~~~~~~~~~~~~~~  285 (423)
                                                                                 ..++|++|+....+.++.++.
T Consensus       470 ~~~l~~~v~~a~~~aglp~~sl~~li~a~~~~~~~a~~~iPGit~~i~~a~~~A~~~aYa~ay~~V~~~siaFG~vaiia  549 (599)
T PF06609_consen  470 PKELPKYVAPAALAAGLPESSLPALIEALAAGNLEALAAIPGITPEIIAAVVAAFQEAYAHAYRYVYYSSIAFGVVAIIA  549 (599)
T ss_pred             hHhHHHHHHHHHHhcCCChhhHHHHHHHHhccChhHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                                                                       015778888888888888888


Q ss_pred             HHhhccCCc
Q 014481          286 FKILQEGET  294 (423)
Q Consensus       286 ~~~~~~~~~  294 (423)
                      .+++++..+
T Consensus       550 a~fl~d~~~  558 (599)
T PF06609_consen  550 ALFLGDIDK  558 (599)
T ss_pred             HHHcCChHH
Confidence            888876544

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=98.36  E-value=0.00012  Score=68.06  Aligned_cols=133  Identities=15%  Similarity=0.094  Sum_probs=98.1

Q ss_pred             hhHHHHHHHHHHHhhhhhhhhHhhHhcCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcccchHhHHHHHHh
Q 014481          151 AGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIAR  230 (423)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~i~~  230 (423)
                      .+.+.-+-.+...+..+++-++.+|+..+.-+.+..++..++.++. +++++.+.-+++-++.+++.|.......++.. 
T Consensus        61 t~~Vlladi~P~l~~Kl~aP~fi~~v~y~~Ri~~~~~l~~~g~l~v-a~~~~v~~~l~Gv~las~ssg~GE~tfL~lt~-  138 (402)
T PF02487_consen   61 TGAVLLADILPSLLVKLIAPFFIHRVPYWIRILICVALSAAGMLLV-AFSPSVWVRLLGVVLASLSSGLGEVTFLSLTH-  138 (402)
T ss_pred             chHHHHHHHHHHHHHHHHhHhhhhhccchHHHHHHHHHHHHHHhhe-eeccchhHHHHHHHHHhhhhhhhHHHHHHHHH-
Confidence            3456666777888888888899999887666666666777777666 56677788888999999998888777777644 


Q ss_pred             cCCCCchhhHHHHHHhhhhhHHHHHHhhHHHhhhccCc--hHHHHHHHHHHHHHHHHHHhhc
Q 014481          231 SIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGW--ESVFYIFGLLGIAWFSGFKILQ  290 (423)
Q Consensus       231 ~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw--~~~~~~~~~~~~~~~~~~~~~~  290 (423)
                      .+++    ...+-+..+.+.++++|+..-..+.+ .|+  |.++.+...+.++.++.++++.
T Consensus       139 ~y~~----~~l~~wssGTG~aGl~Ga~~y~~lT~-~g~s~~~tll~~~~lp~~~~~~~f~~L  195 (402)
T PF02487_consen  139 FYGK----SSLSAWSSGTGGAGLVGALYYLGLTT-LGLSPRTTLLIMLVLPAIFLLSYFFLL  195 (402)
T ss_pred             hcCc----cccccccCCcChhhHHHHHHHHHHHH-hCcCHHHHHHHHHHHHHHHHHHHHHhh
Confidence            5553    45788999999999999988776666 554  6677777766655555544443

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>PTZ00207 hypothetical protein; Provisional

Probab=98.28  E-value=1.3e-05  Score=78.89  Aligned_cols=171  Identities=11%  Similarity=0.015  Sum_probs=118.5

Q ss_pred             HHHHHHHHHHHHhhhhhhhhhHHHhhhhh-CCCc-chhhH-HHHHHHHHHHhhhhhhhhHhhHhcC--------chH-HH
Q 014481          116 IGTTSLAFVICNMDKVNLSVAIIPMSHRF-GWNS-SVAGL-VQSSFFWGYALSQLPGGWLAKIFGG--------RKV-LQ  183 (423)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~s~-~~~~~-~~~~~~~~~~~~~~~~g~l~dr~G~--------r~~-~~  183 (423)
                      ++++++.+++.......+..-+.++.+.+ |.+. .+... +.+++.++..+|.+..|.+....-+        |.. +.
T Consensus       355 ~Wll~~~~~cg~g~gl~~~~N~~qI~~sl~g~~~~~~~~~~~vsL~si~~~~GRl~~g~~~~~~~~~~~~~r~prt~~l~  434 (591)
T PTZ00207        355 LWCLLWSIFCCVGAHFVIIFNARFIYTALAGEAPDDALNTLLTVLNGVGSAVGRLCMSYFEIWSQKRRAEDRVPITIALF  434 (591)
T ss_pred             HHHHHHHHHHhhCchheeeecHHHHHHHhcCCCCCccceeeehhhhhHHHHhhHHHHHHHHHHHHhhccccccchhHHHH
Confidence            44555555555555555555567788888 6522 32222 7788889999999988887722211        122 23


Q ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcccchHhHHHHHHhcCCCCchhhHHHHHHhhhhhHHHHH-HhhHHHh
Q 014481          184 TGVLIWSLATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAG-LLLAPPI  262 (423)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g-~~~~~~l  262 (423)
                      +..+ +.++.+++....+ ...+++.-++.|++.|..++.....++|+|. ++-|+-..+......+|..+- -.+.|.+
T Consensus       435 ~~~~-~~~~~lll~~~~p-~~~L~~~~~lvg~~~G~~~~~~~~i~selFg-k~~g~~yN~~~~a~pigs~~~n~~l~G~~  511 (591)
T PTZ00207        435 IPSV-CIITMLTLFLTLP-KAALPLPYFIAAFANGFMAATIALVTRTIFA-KDPAKHYNFCFLGSVLSAIFLNRLLYGEW  511 (591)
T ss_pred             HHHH-HHHHHHHHHHHCC-ccHhHHHHHHHHHHhhHhHHHHHHHHHHHhc-cchHHHhhHHhHHHHHHHHHHHHHHHHHH
Confidence            3333 4555545433223 2578899999999999999999999999999 999999999999999998887 5677777


Q ss_pred             hhcc----------C---chHHHHHHHHHHHHHHHHHHhh
Q 014481          263 IENL----------G---WESVFYIFGLLGIAWFSGFKIL  289 (423)
Q Consensus       263 ~~~~----------g---w~~~~~~~~~~~~~~~~~~~~~  289 (423)
                      .|+.          |   ++.+|++++.+++..++....+
T Consensus       512 Yd~ea~k~~~~~C~G~~C~~~~~~v~~~~~~~g~~~s~~l  551 (591)
T PTZ00207        512 YTQQADKLGQDVCTERVCVVMPLAFLLGLSFLAFITSTYV  551 (591)
T ss_pred             HHHHHhhCCCCeeCCceeeHhHHHHHHHHHHHHHHHHhhe
Confidence            7532          2   6788999988887776655444

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.23  E-value=6.5e-06  Score=79.26  Aligned_cols=163  Identities=17%  Similarity=0.240  Sum_probs=106.8

Q ss_pred             HHHHHHHHHHHHHhhhhhhhhhHHHhhhh-hCCCcchhhHHHHHHHHHHHhhhhhhhhHhhH----hcCchHHHHHHHHH
Q 014481          115 LIGTTSLAFVICNMDKVNLSVAIIPMSHR-FGWNSSVAGLVQSSFFWGYALSQLPGGWLAKI----FGGRKVLQTGVLIW  189 (423)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr----~G~r~~~~~~~~~~  189 (423)
                      .++..+++.++.....+.....+|.+.++ .|.+..+.+.+...+.++.+++.+++|+++||    ..+|..+.....++
T Consensus       274 ~vw~~~l~~~~~~lv~~~~~~~lpl~l~~~~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~~~~~~~~~~~~~~~~~~  353 (495)
T KOG2533|consen  274 GVWPFSLCYFFLKLVNYGFSYWLPLYLKSNGGYSELQANLLSTPYDVGGIVGLILAGYLSDRLKTIFARRLLFIVFLCLY  353 (495)
T ss_pred             hHHHHHHHHHHHhhccccHHHHHHHHHHcCCCcChHHhccccchHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence            35567777888888888888999997777 56899999999999999999999999999999    66777776666665


Q ss_pred             HHHH-HHHHHhhhHHHHHHHHHHHHHhhcccchHhHHHHHHhcCCCCch-hhHHHHHHhhhhhHH-HHHHhhHHHhhhcc
Q 014481          190 SLAT-ALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEER-SRAVSFVFGGLSFGS-VAGLLLAPPIIENL  266 (423)
Q Consensus       190 ~~~~-~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r-~~~~~~~~~~~~~g~-~~g~~~~~~l~~~~  266 (423)
                      .+.. ..+ ....+........+....+.....+.......+...++.| -...+....+.+.++ +.++...+....++
T Consensus       354 ~~~g~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~s~~~~g~~k~~~~~~~~i~~~~s~~~~~~~~~~~~~ap~y  432 (495)
T KOG2533|consen  354 AIIGAISL-LAAAVLPGAYGAFLIGPYGLIATAIIALSWTSANLAGNTKALTTVSAIIDGTGSAGAISGQLFRSLDAPRY  432 (495)
T ss_pred             HHHHHHHH-HhhccchHHhHHHHhcchhhHHHHHHHHhhccccccchHHhHHHHhhhhcchhHHHHhhhhhcccccCcch
Confidence            5544 333 2223223333333333444455556666677776654443 334444444444444 44444455555667


Q ss_pred             CchHHHHHHHHH
Q 014481          267 GWESVFYIFGLL  278 (423)
Q Consensus       267 gw~~~~~~~~~~  278 (423)
                      +|.+.|+.....
T Consensus       433 ~~~~~f~~~~~~  444 (495)
T KOG2533|consen  433 GWGAVFYMLVAA  444 (495)
T ss_pred             hhhhHHHHHHHH
Confidence            888888544333

>COG3202 ATP/ADP translocase [Energy production and conversion]

Probab=98.22  E-value=0.0021  Score=60.48  Aligned_cols=277  Identities=12%  Similarity=0.010  Sum_probs=155.1

Q ss_pred             hHHHHHHHHHHHHHHHhhhhhhhhhHHHhhhhhC---CCcchhhHHHHHHHH-HHHhhhhhhhhHhhHhcCchHHHHHHH
Q 014481          112 RYKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFG---WNSSVAGLVQSSFFW-GYALSQLPGGWLAKIFGGRKVLQTGVL  187 (423)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~s~~~~~~~~~~~~~-~~~~~~~~~g~l~dr~G~r~~~~~~~~  187 (423)
                      .+..++.+.+..++..+..+..-    .+.+.+.   ..+..+.++-+...+ +..+..++.+++.+++.+.+++-+...
T Consensus        25 E~~kflpl~Ll~f~I~~ny~~lR----~lKDslvv~~~gae~I~FlK~~~vlP~avif~~iy~kl~~~lt~~~vF~~~~~  100 (509)
T COG3202          25 ELKKFLPLALLFFCILFNYNLLR----SLKDSLVVTRQGAESISFLKTWGVLPSAVIFTIIYQKLLNILTREKVFYIILG  100 (509)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH----HhhhheEeecCcchhhHHHHHHHhchHHHHHHHHHHHHHhhcCHHHHHHHHHH
Confidence            44555555555555554444433    3444443   346667888888877 677888999999999999999877766


Q ss_pred             HHHHHHHHHHHhh--------------h--------H---------HHHHHHHHHHHHhhcccchH-hHHHHHHhcCCCC
Q 014481          188 IWSLATALLPLLA--------------G--------F---------MPGLVLSRVLVGIGEGVSPS-AATDLIARSIPLE  235 (423)
Q Consensus       188 ~~~~~~~~~~~~~--------------~--------~---------~~~~~~~~~l~G~~~~~~~~-~~~~~i~~~~~~~  235 (423)
                      .+....+++++.-              .        +         .|...+..+..-+-.+.... .-.....|.+..+
T Consensus       101 ~F~~fF~LFa~Vi~P~~~~~hp~~~~~~~~~~~~p~~l~~~ili~~~Ws~s~~Yi~aELWgslV~S~lFw~faNeitt~~  180 (509)
T COG3202         101 FFLGFFALFAFVIYPYKDILHPDPEFSRDLFADLPMFLKWFILIVGEWSYSLFYIMAELWGSLVLSLLFWQFANEITTIE  180 (509)
T ss_pred             HHHHHHHHHHHHHhccccccCCCHHHHHHHHhhCCccceeeeEeecchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence            6655555554321              1        0         02222222333333233333 4567788999989


Q ss_pred             chhhHHHHHHhhhhhHHHHHHhhHHHhhhcc-C---------chHHHHHHHHHHHHHHHHHHhhccCCcCcCCCCCcchh
Q 014481          236 ERSRAVSFVFGGLSFGSVAGLLLAPPIIENL-G---------WESVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSN  305 (423)
Q Consensus       236 ~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~-g---------w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (423)
                      +-.|.+++++.+.+++..++..+..++.++. .         .+..+.+.++..++++.+..++.+.-...+.... +..
T Consensus       181 eakRFy~lf~l~~ni~lllsg~~~~~~~k~~~~~~~~~~~~~~~~~~~vi~~~~~i~~~l~~~~~r~il~~~~f~~-~~~  259 (509)
T COG3202         181 EAKRFYPLFGLGANISLLLSGEVTSWLSKHRDALASEFKDLLLQILFIVIVILGIIAILLYRYINRNVLTDPLFYL-RAK  259 (509)
T ss_pred             HhhhhHHHHHHHHHHHHHHHHHHHHHHhhchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhH-HHh
Confidence            9999999999999999999999988887632 1         2333444444444444444444332211111000 000


Q ss_pred             hhhhhhhhhhhHHhhccccCCCcHHHhhhcHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhhCCChhhH---HHHHHHHH
Q 014481          306 YINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEA---AWVSILPP  382 (423)
Q Consensus       306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~---~~~~~~~~  382 (423)
                      ....++        ..+-.-...++.+.++|.++.+++...+++.+.+.+....-.-.++.+.......   +.+....+
T Consensus       260 ~kk~~~--------k~k~~~~~s~k~i~~SkyL~~ial~vl~Y~v~inLvE~~wKs~ik~~~~~~~~~~~f~~~~~~~tg  331 (509)
T COG3202         260 KKKKKK--------KLKLGLIESFKMILRSKYLGAIALLVLAYGVSINLVEGVWKSGIKELYPTTNEYTAFMGRFQIWTG  331 (509)
T ss_pred             cccccc--------cccCcHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcCChhHHHHHHHHHHHHHH
Confidence            000000        0000000124667888888888888888887777666544333443333333333   23344444


Q ss_pred             HH-HHHHHHHHHHHhHHhhh
Q 014481          383 LA-SVLVTSIAAQFADNLIA  401 (423)
Q Consensus       383 ~~-~~~~~~~~g~l~dr~~~  401 (423)
                      +. .++...+++.+.+|.|-
T Consensus       332 vv~~v~~~~~~s~~ir~~GW  351 (509)
T COG3202         332 VVSLVVFLFPGSNLIRRVGW  351 (509)
T ss_pred             HHHHHHHHhhhHHHHHHhhH
Confidence            44 44455566777777663

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=98.16  E-value=3.4e-05  Score=69.80  Aligned_cols=133  Identities=21%  Similarity=0.148  Sum_probs=105.9

Q ss_pred             hhhhhhHHHh-hhhhCCCcchhhHHHHHHHHHHHhhhhhhhhHhhHhc--CchHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 014481          131 VNLSVAIIPM-SHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFG--GRKVLQTGVLIWSLATALLPLLAGFMPGLV  207 (423)
Q Consensus       131 ~~~~~~~~~~-~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G--~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~  207 (423)
                      ..+....+.+ ...+|.++.+.|-+.+...+...+.+....+..||..  -+-.+..+..++.-..++.. .......+.
T Consensus       278 s~~~~t~~~l~~~rfg~ss~~~G~vl~~tGl~m~~~ql~~~~~l~~~~~~~~a~l~~~l~~~vP~~llls-~~~~~~~l~  356 (451)
T KOG2615|consen  278 SGLENTVLFLTHGRFGYSSMQQGKVLSTTGLLMLVIQLALVPILPRYKGNIKAVLLFSLLLIVPAFLLLS-LARTPVVLY  356 (451)
T ss_pred             HHHHhhHHHhhcCccCCChhhheeeeehhhHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHHHh-ccccchhhh
Confidence            3333333433 3679999999999999999999999999999999987  66666666665544444443 334436677


Q ss_pred             HHHHHHHhhcccchHhHHHHHHhcCCCCchhhHHHHHHhhhhhHHHHHHhhHHHhhh
Q 014481          208 LSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIE  264 (423)
Q Consensus       208 ~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~  264 (423)
                      .+-.+-.+..+...+....++....|+++||.++|+......++-.+||+++|.+..
T Consensus       357 ~~s~l~sf~~A~~vt~Lt~Lv~~~~~~~qrG~~~Gi~~Sl~alaRaiGPlv~g~i~~  413 (451)
T KOG2615|consen  357 LGSTLKSFSTASVVTCLTSLVHKYGPQSQRGTLNGIFRSLGALARAIGPLVSGVIFS  413 (451)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHhhhhhhheeEE
Confidence            777888888888889999999999999999999999999999999999999988764

>PF12832 MFS_1_like: MFS_1 like family

Probab=98.11  E-value=1.7e-05  Score=55.53  Aligned_cols=64  Identities=20%  Similarity=0.227  Sum_probs=56.8

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhHHHHHhhCCChhhHHHHHHHHHHHHHHHHHHHHHHhHHhhhcCC
Q 014481          340 AMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGV  404 (423)
Q Consensus       340 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~r~~  404 (423)
                      .+-..+++.+.+...+..++|.|+++ .|+++.+.|.+.++..+..+++.+++|+++||+++++.
T Consensus         4 ~lk~~yf~~f~~~g~~~Pfl~~~~~~-~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~   67 (77)
T PF12832_consen    4 PLKAFYFFYFAALGCLYPFLPLYLKQ-LGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKV   67 (77)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhHhhhh-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHH
Confidence            34556777788888899999999986 69999999999999999999999999999999998743

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=98.07  E-value=3.3e-05  Score=76.31  Aligned_cols=157  Identities=17%  Similarity=0.069  Sum_probs=106.1

Q ss_pred             HHHhhhhhCCCcchhhHHHHHHHHHHHhhhhhhhhHhhHhcCchHHHHHHHHHHHHHHHHHHhhhHHH--HHHHHHHHHH
Q 014481          137 IIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMP--GLVLSRVLVG  214 (423)
Q Consensus       137 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~G  214 (423)
                      ++.....+|.+..   .................+.+.|++|||.....+..+..++.++.+.......  ...+...+..
T Consensus       341 l~~~~~~lg~~~~---~~~~~~~~~~~p~~~~~~~~~~~~gR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  417 (521)
T KOG0255|consen  341 LSLNVSGLGGNIY---LNFTLSGLVELPAYFRNGLLLPEFGRRPPLFLSLFLAGIGLLLFGWLPDDLGGWLHWILPLLGK  417 (521)
T ss_pred             hhhhhhhcCchHH---HHHHHHHHHHhhHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHH
Confidence            3334444554432   3333333344455555689999999999999999998888887765554322  3455555555


Q ss_pred             hhcccchHhHHHHHHhcCCCCchhhHHHHHHhhhhhHHHHHHhhHHHhhhccCchHHHHHHHHHHHHH-HHHHHhhccCC
Q 014481          215 IGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAW-FSGFKILQEGE  293 (423)
Q Consensus       215 ~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw~~~~~~~~~~~~~~-~~~~~~~~~~~  293 (423)
                      ++.+..+.....+.+|.+|...|..+.+.......+|.+++|.+...... ......+.+.+....+. ++...++||+.
T Consensus       418 ~~~~~~~~~~~~~~~el~pt~~r~~~~~~~~~~~~~~~i~ap~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~lpet~  496 (521)
T KOG0255|consen  418 FFIGSAFNLIFLYSAELIPTVVRNTAVGAISAAARLGSILAPLFPLLLRQ-MFPLLGLILFGWLALLLGLLSLLLLPETK  496 (521)
T ss_pred             HHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hcccchHHHHHHHHHHHHHHHHhcCcccC
Confidence            66666667779999999999999999999999999999999998765544 22222233335555444 44447888877


Q ss_pred             cCcC
Q 014481          294 TSNG  297 (423)
Q Consensus       294 ~~~~  297 (423)
                      ....
T Consensus       497 ~~~l  500 (521)
T KOG0255|consen  497 GKPL  500 (521)
T ss_pred             CCCC
Confidence            6544

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=98.06  E-value=0.0003  Score=68.05  Aligned_cols=133  Identities=17%  Similarity=0.107  Sum_probs=96.9

Q ss_pred             hhhHHHHHHHHHHHhhhhhhhhHhhHhcC--ch-----HHHHHHHHHHHHHHHHHHhh--------hHHHHHHHHHHHHH
Q 014481          150 VAGLVQSSFFWGYALSQLPGGWLAKIFGG--RK-----VLQTGVLIWSLATALLPLLA--------GFMPGLVLSRVLVG  214 (423)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~g~l~dr~G~--r~-----~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~l~G  214 (423)
                      ..+|..++..+..++.+|+.+++-.|.++  |.     =+.+|+++.+++.+++....        .+.+++++..++.+
T Consensus       309 p~~~~qslNp~~ii~l~P~~a~lw~~l~~~~~~~s~~~Kfa~g~~~~g~~f~~l~~~~~~~~~~~~~s~~wl~~~~~~~t  388 (493)
T PRK15462        309 PTAMFQSINAFAVMLCGVFLAWVVKESVAGNRTVRIWGKFALGLGLMSAGFCILTLSARWSAMYGHSSLPLMVLGLAVMG  388 (493)
T ss_pred             CHHHHHhHhHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHHH
Confidence            35788899999999999988888777633  21     16677777777776553211        24567888889999


Q ss_pred             hhcccchHhHHHHHHhcCCCCchhhHHHHHHhh-hhhHHHHHHhhHHHhhhc------------cCchHHHHHHHHHHHH
Q 014481          215 IGEGVSPSAATDLIARSIPLEERSRAVSFVFGG-LSFGSVAGLLLAPPIIEN------------LGWESVFYIFGLLGIA  281 (423)
Q Consensus       215 ~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~-~~~g~~~g~~~~~~l~~~------------~gw~~~~~~~~~~~~~  281 (423)
                      +|.-...|...+++++..|++-||+.+|.+... ..+|..++..+++.....            ..+...|...++.+++
T Consensus       389 ~gEl~~sPvgls~~~~laP~~~~g~~mg~w~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~  468 (493)
T PRK15462        389 FAELFIDPVAMSQITRIEIPGVTGVLTGIYMLLSGAIANYLAGVIADQTSQASFDASGAINYSINAYIEVFDQITWGALA  468 (493)
T ss_pred             HHHHHHChHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCccccccchhhhHHHHHHHHHHHHHH
Confidence            999999999999999999999999999998764 367777776666655311            1244567666666554


Q ss_pred             H
Q 014481          282 W  282 (423)
Q Consensus       282 ~  282 (423)
                      .
T Consensus       469 ~  469 (493)
T PRK15462        469 C  469 (493)
T ss_pred             H
Confidence            4

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=98.01  E-value=0.00021  Score=68.53  Aligned_cols=124  Identities=21%  Similarity=0.217  Sum_probs=105.6

Q ss_pred             HhhhhhCCCcchhhHHHHHHHHHHHhhhhhhh-hHhhHhcCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhc
Q 014481          139 PMSHRFGWNSSVAGLVQSSFFWGYALSQLPGG-WLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSRVLVGIGE  217 (423)
Q Consensus       139 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g-~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~  217 (423)
                      .+...+++++.+.+...+.......+++++.. .+...+|-|+.+.+|++.-.+..+..+ +.++.|.++...++.++. 
T Consensus       267 yl~~~f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~l~~~~~i~lGl~~~~~~~~~~a-f~~~~w~~~~~~v~~~~~-  344 (463)
T KOG2816|consen  267 YLKAKFGWNKKEFSDLLSLVSILGIISQLLLLPLLSSILGEKRLISLGLLSEFLQLLLFA-FATETWMMFAAGVVVALA-  344 (463)
T ss_pred             EEeeecCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHHHH-HhccchhhhHHHHHHHhh-
Confidence            35667899999999999988888888888877 678888999999999988888887774 556658777777777766 


Q ss_pred             ccchHhHHHHHHhcCCCCchhhHHHHHHhhhhhHHHHHHhhHHHhhh
Q 014481          218 GVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIE  264 (423)
Q Consensus       218 ~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~  264 (423)
                      ....+...+.++.+..++++|+++++......+..+++|.+-+.+..
T Consensus       345 ~~~~pa~~s~~s~~v~~~e~g~v~~~is~i~~l~~~~~~~~~~~i~~  391 (463)
T KOG2816|consen  345 GIVFPAIRAFASILVSPEEQGKVFGIISGIEGLSGVVSPALYGNIFA  391 (463)
T ss_pred             cchhHHHHhHHHhhcccccccchhhHHHHHHHHhhhhhHHHHHHHHH
Confidence            66779999999999999999999999999999999999999888764

>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters

Probab=97.98  E-value=4.2e-05  Score=72.09  Aligned_cols=110  Identities=22%  Similarity=0.272  Sum_probs=88.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHhh--hH------HHHHHHHHHHHHhhcccchHhHHHHHHhcCCCC---chhhHHHHHHhhh
Q 014481          180 KVLQTGVLIWSLATALLPLLA--GF------MPGLVLSRVLVGIGEGVSPSAATDLIARSIPLE---ERSRAVSFVFGGL  248 (423)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~--~~------~~~~~~~~~l~G~~~~~~~~~~~~~i~~~~~~~---~r~~~~~~~~~~~  248 (423)
                      |+++++.+++.+|.+++...+  ..      .+.++++.++.++|.|+.-|...++.+|.++++   +|...+.+++.+.
T Consensus         2 ktI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~i   81 (372)
T PF00854_consen    2 KTILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGI   81 (372)
T ss_dssp             HHHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHH
T ss_pred             HhhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHH
Confidence            567778888888887743222  22      246888889999999999999999999999765   4678888999999


Q ss_pred             hhHHHHHHhhHHHhhhccCchHHHHHHHHHHHHHHHHHHhh
Q 014481          249 SFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFSGFKIL  289 (423)
Q Consensus       249 ~~g~~~g~~~~~~l~~~~gw~~~~~~~~~~~~~~~~~~~~~  289 (423)
                      ++|..+++.+.+++-++.||.+.|.+.++..++.++.++.-
T Consensus        82 n~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f~~~  122 (372)
T PF00854_consen   82 NIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVFLSG  122 (372)
T ss_dssp             HHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHHHCC
T ss_pred             hhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHHHhC
Confidence            99999999999999999999999999988887776655444

The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.

>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]

Probab=97.97  E-value=0.00035  Score=65.74  Aligned_cols=280  Identities=11%  Similarity=-0.009  Sum_probs=143.7

Q ss_pred             HHHHHHHHHHHhhhhhhhhhHHHhhhh--hCCCcchhhHHHHH---HHHHHHhhhhhhhhHhhHhcCchHHHHHH-HHHH
Q 014481          117 GTTSLAFVICNMDKVNLSVAIIPMSHR--FGWNSSVAGLVQSS---FFWGYALSQLPGGWLAKIFGGRKVLQTGV-LIWS  190 (423)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~s~~~~~~~~~~---~~~~~~~~~~~~g~l~dr~G~r~~~~~~~-~~~~  190 (423)
                      .++.+.+++++.-.+.....+|.+.++  -+.|.++.|....+   |.+=..-++++=...+.|+||||..++-. .+.+
T Consensus         3 ~lL~~LY~lQGiP~GL~~gsiPflL~~~~~~~sy~q~~~fSla~~PfSlKlLWaPiVDs~y~~~~GRRKSWiiP~Q~l~g   82 (544)
T PF13000_consen    3 ALLVLLYFLQGIPLGLAFGSIPFLLQSMAKKVSYSQQAIFSLASYPFSLKLLWAPIVDSVYSKRIGRRKSWIIPIQYLSG   82 (544)
T ss_pred             eHHHHHHHHcCcccccccccchhhhccccCCCChhHheeeeeeechhHHHHhhhhhhhhhcccccCCcchhhhHHHHHHH
Confidence            345666777777666665677887777  67787776654322   22222222223333344799999887642 3333


Q ss_pred             HHHHHHHHhh----------h-------------HHHHHHHHHHHHHhhcccchHhHHHHHHhcCCCCchhhHHHHHHhh
Q 014481          191 LATALLPLLA----------G-------------FMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGG  247 (423)
Q Consensus       191 ~~~~~~~~~~----------~-------------~~~~~~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~  247 (423)
                      +..+.++...          +             +...+....++.-+-.+....+.-.+.-.+..+++++.+......+
T Consensus        83 ~~m~~l~~~i~~~~~~~~~~d~~~~~~~~~~~~~~i~~Lt~~F~~L~fl~ATQDIAVDGWALT~Ls~~n~~~ASTcqtvG  162 (544)
T PF13000_consen   83 ILMLYLSYNISQWLLFDGVDDALLGQGESTVNNITIKFLTWFFFILVFLCATQDIAVDGWALTMLSPENVGYASTCQTVG  162 (544)
T ss_pred             HHHHHHHhccchhhcccccchhhhcCCCCcccccchhHHHHHHHHHHHHHccCCceeehhhhhhcChhhcchHHHHHHhH
Confidence            3333322211          0             0011223332333444555556666666777778888888877777


Q ss_pred             hhhHHHHHHhhHHHhhhc-------------cC---chHHHHHHHHHHHHHHHHHHhhccCCcCcCCCCCcc----hhhh
Q 014481          248 LSFGSVAGLLLAPPIIEN-------------LG---WESVFYIFGLLGIAWFSGFKILQEGETSNGATLAPR----SNYI  307 (423)
Q Consensus       248 ~~~g~~~g~~~~~~l~~~-------------~g---w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~  307 (423)
                      .++|..++..+--.+-+.             .|   -.....+.+.+.++..+...++.++++......+.+    .+..
T Consensus       163 ~~~Gyfls~tvFlalns~~f~Nky~r~~p~~~glvtl~~yl~fwg~~~l~~T~~v~~~k~E~~~~~~~~~~~~~~~~~~~  242 (544)
T PF13000_consen  163 QTAGYFLSFTVFLALNSPDFCNKYLRSTPSDEGLVTLSGYLKFWGWVFLIVTILVAFFKKEKPHSESLPKIEPINKSDGK  242 (544)
T ss_pred             hhhhHHHHHHHHHhhCCHHHHHHhcccCCCCCCeeeHHHHHHHHHHHHHHHHHHHheEeecccccccCcccccccccccc
Confidence            777777766554444321             01   122334455555555444444444332211110000    0000


Q ss_pred             hhhhh-hhhhH-----Hhhc-cccCCCcHHHhhhcHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhhCCChhhHHHHHHH
Q 014481          308 NMKKS-LSASL-----EEMG-ESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSIL  380 (423)
Q Consensus       308 ~~~~~-~~~~~-----~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~  380 (423)
                      ..+.. ..++.     ++.. -......+.+++|-|.+..+++.....-.++.........=+.| .|++.++.+.+..+
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~~i~~~Y~~l~~ilkLp~V~~li~ilL~~KigF~a~da~T~LKLlE-kG~~KE~LAl~~li  321 (544)
T PF13000_consen  243 SKEISIEYDESDVISTEEILSIKDVYKSLWKILKLPNVQTLIIILLTAKIGFQANDAVTSLKLLE-KGLSKEDLALLVLI  321 (544)
T ss_pred             ccccceecccccccchhhhhhHHHHHHHHHHHHcCchHHHHHHHHHHHHhccccchhhhHHHHHH-cCCCHHHhHHHHHH
Confidence            00000 00000     0000 00001123456777888888888888888877777777777776 59999988766544


Q ss_pred             HHHHHHHHHHHHHHHhHHhhh
Q 014481          381 PPLASVLVTSIAAQFADNLIA  401 (423)
Q Consensus       381 ~~~~~~~~~~~~g~l~dr~~~  401 (423)
                      .    +...++.|+++.|+.+
T Consensus       322 ~----~P~qii~~~~~~Kws~  338 (544)
T PF13000_consen  322 D----FPFQIILPYYIGKWSA  338 (544)
T ss_pred             h----hhHHHHHHHHhhhhhc
Confidence            4    4444445555555443

This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=97.83  E-value=0.00053  Score=63.84  Aligned_cols=113  Identities=18%  Similarity=0.077  Sum_probs=78.2

Q ss_pred             CcchhhHHHHHHHHHHHhhhhhhhhHhhHhcCchHHHHHHHHHHHHHH--HHH--HhhhHHHHHHHHHHHHHhhcccchH
Q 014481          147 NSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATA--LLP--LLAGFMPGLVLSRVLVGIGEGVSPS  222 (423)
Q Consensus       147 s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~--~~~--~~~~~~~~~~~~~~l~G~~~~~~~~  222 (423)
                      ...+.-+....|.+|-.++.--...    +.-|+..+.+.+-..-..+  +-+  .+.++.|.+++..+..|+..|..+.
T Consensus       279 ~r~~Y~~Y~~~YQ~GVFISRSS~~~----~rir~lwils~LQ~~nl~~~~l~s~~~fipsi~ivf~lif~eGLlGGa~YV  354 (402)
T PF02487_consen  279 PRDQYRWYQLLYQLGVFISRSSLPF----FRIRRLWILSLLQVINLVFLLLQSWYRFIPSIWIVFVLIFYEGLLGGASYV  354 (402)
T ss_pred             HHHHHHHHHHHHHHHHhhhhcceee----eehhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhHHHH
Confidence            3556677777777776666433221    2234444444332211111  111  1235667777888999999999999


Q ss_pred             hHHHHHHhcCCCCchhhHHHHHHhhhhhHHHHHHhhHHHhh
Q 014481          223 AATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPII  263 (423)
Q Consensus       223 ~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~  263 (423)
                      .....+.+-.++++|..++|....+-++|.+++.+++-.+-
T Consensus       355 NtF~~I~~~~~~~~REFslg~vsvsds~GI~lAgll~l~le  395 (402)
T PF02487_consen  355 NTFYRISEEVPPEDREFSLGAVSVSDSLGILLAGLLGLPLE  395 (402)
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999988876553

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=97.62  E-value=0.0018  Score=61.26  Aligned_cols=140  Identities=19%  Similarity=0.079  Sum_probs=104.4

Q ss_pred             chhhHHHHHHHHHHHhhhhhhhhHhhHhcCc-------hHHHHHHHHHHHHHHHHHHh----h-----hHHHHHHHHHHH
Q 014481          149 SVAGLVQSSFFWGYALSQLPGGWLAKIFGGR-------KVLQTGVLIWSLATALLPLL----A-----GFMPGLVLSRVL  212 (423)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r-------~~~~~~~~~~~~~~~~~~~~----~-----~~~~~~~~~~~l  212 (423)
                      -..++..+...+..++.+|+..++..+.+++       .-+-+++.+.+.+.+++...    .     .+.++++...++
T Consensus       324 vp~~~fQslNp~~Iii~~pI~a~l~~~l~~~~~~ps~~~KFalGl~l~g~~fl~l~~~~~~~~~~~~~~s~~~lil~y~l  403 (498)
T COG3104         324 VPPAWFQSLNPFFIILFSPILAALWTKLGRGNKQPSTPIKFALGLILAGLGFLILLLAGIWFGGPSGLVSVWWLVLSYVL  403 (498)
T ss_pred             cCHHHHHhhCHHHHHHHHHHHHHHHhHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHH
Confidence            3457888999999999999988888885543       22445555655555544322    1     246788899999


Q ss_pred             HHhhcccchHhHHHHHHhcCCCCchhhHHHHHHhhhhhHHHHHHhhHHH------hhhccCchHHHHHHHHHHHHHHHHH
Q 014481          213 VGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPP------IIENLGWESVFYIFGLLGIAWFSGF  286 (423)
Q Consensus       213 ~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~------l~~~~gw~~~~~~~~~~~~~~~~~~  286 (423)
                      +++|.=+..|...+++....|++-.+..++.+......|..++..+++.      ..+.......|+..+...++..+..
T Consensus       404 ~s~gEL~iSpvGLs~~t~laP~~~~s~~ma~wfLt~a~~~~l~g~va~~~~~~~~~~~~~~~~~~F~~~g~v~i~~~~~~  483 (498)
T COG3104         404 QSFGELFISPVGLSMVTKLAPPALKSFIMAMWFLTVAAGQTLGGQVAGLTAVTDPAYTAFIEGRVFGTIGVVAIVIGILL  483 (498)
T ss_pred             HHHHHHHhCHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhhceecccccccchhhhhhhhhhhHHHHHHHHHHHHHHH
Confidence            9999999999999999999999889999999999999888888888774      2334455677888887776665444


Q ss_pred             Hh
Q 014481          287 KI  288 (423)
Q Consensus       287 ~~  288 (423)
                      +.
T Consensus       484 ~~  485 (498)
T COG3104         484 LL  485 (498)
T ss_pred             HH
Confidence            33

>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]

Probab=97.58  E-value=0.0027  Score=62.59  Aligned_cols=177  Identities=18%  Similarity=0.074  Sum_probs=129.6

Q ss_pred             hHHHHHHHHHHHHHHHhhh-hhhhhhHHHhhhhhCCCcchhhHHHHHHHHHHHhhhhhhhhHhhHh-cCchHHHHHHHHH
Q 014481          112 RYKLIGTTSLAFVICNMDK-VNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIF-GGRKVLQTGVLIW  189 (423)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-G~r~~~~~~~~~~  189 (423)
                      .|+....+.....+.-+.. ....+.+..+.++++.+...+.-..+.+.-.....+++++.++|-| ||-+++.++.++.
T Consensus        35 ~~~s~~~il~~e~~e~~a~~g~~~nlv~ylt~~~~~~~~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s~i~  114 (571)
T KOG1237|consen   35 GWLSAPFILGNEVLERLAFFGLVSNLVTYLTLELHASGGGAANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGSLIS  114 (571)
T ss_pred             hhHhHHHHHHHHHHHHHhHhcchhHHHHHHHHHhccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            3444444443333333333 3345677778889998888787888888888888889999999975 8888888888887


Q ss_pred             HHHHHHHHHhhhH------------------------HHHHHHHHHHHHhhcccchHhHHHHHHhcCC---CC---chhh
Q 014481          190 SLATALLPLLAGF------------------------MPGLVLSRVLVGIGEGVSPSAATDLIARSIP---LE---ERSR  239 (423)
Q Consensus       190 ~~~~~~~~~~~~~------------------------~~~~~~~~~l~G~~~~~~~~~~~~~i~~~~~---~~---~r~~  239 (423)
                      .++.+++.+.+.-                        ...+.....+..+|.|+.-+...++-+|-++   ++   .+..
T Consensus       115 ~~G~~~lt~~a~~~~l~p~~~~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~  194 (571)
T KOG1237|consen  115 LLGLFGLTLSAMIPALLPFMCKFKPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKGIPS  194 (571)
T ss_pred             HHHHHHHHHHHHhhhcCCccccCCCCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhCccc
Confidence            7776544322110                        1246666777788999999999999999998   22   2336


Q ss_pred             HHHHHHhhhhhHHHHHHhhHHHhhhccCchHHHHHHHHHHHHHHHHHHh
Q 014481          240 AVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFSGFKI  288 (423)
Q Consensus       240 ~~~~~~~~~~~g~~~g~~~~~~l~~~~gw~~~~~~~~~~~~~~~~~~~~  288 (423)
                      .+.++....++|..++..+..++-+..||.+.|.+..+..++++++++.
T Consensus       195 fFnW~yf~~~~g~l~a~t~~vyiq~~~~w~lgf~i~~~~~~lai~iF~~  243 (571)
T KOG1237|consen  195 FFNWFYFSQNGGALLAQTVLVYIQDNVGWKLGFGIPTVLNALAILIFLP  243 (571)
T ss_pred             chhHHHHHHHHHHHHHHHHHHhhhhcccceeeccHHHHHHHHHHHHHHc
Confidence            7888999999999999999888888889999999988887666555443

>KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism]

Probab=97.58  E-value=0.0002  Score=63.95  Aligned_cols=239  Identities=13%  Similarity=0.018  Sum_probs=140.6

Q ss_pred             HHHhhhhhhhhHhhHhcCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcccchHhHHHHHHhcCCCCchhhH
Q 014481          161 GYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRA  240 (423)
Q Consensus       161 ~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~  240 (423)
                      .+.+.-.+.=.+.|..-.|+++++-.+...+..+++ .+.++.+.+=+.-++.|...+. ..+.++++-...+++++.++
T Consensus        54 SYLv~LvpvFlLTD~lrYKPvivlq~ls~v~~w~~l-v~g~sV~~mQvlE~FyG~~tAa-EIAYysYIYs~Vd~~~Yqrv  131 (433)
T KOG3810|consen   54 SYLVGLVPVFLLTDYLRYKPVVVLQALSGVPVWIML-VFGPSVKAMQVLEFFYGPATAA-EIAYYSYIYSKVDPEMYKRV  131 (433)
T ss_pred             HHHHHHHHHHHHhhhhhcceeeeeeccchhHHHHHH-HhcCCchheeeehhhcChHHHH-HHhhhheeeeecCHHHHHHH
Confidence            444555556668899989998887655544444444 5667777777777888877543 45667788888899999999


Q ss_pred             HHHHHhhhhhHHHHHHhhHHHhhhccCch--HHHHHHHHHHHHHHHHHHhhccCCcCcCCCCCcchhh------hhhhhh
Q 014481          241 VSFVFGGLSFGSVAGLLLAPPIIENLGWE--SVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNY------INMKKS  312 (423)
Q Consensus       241 ~~~~~~~~~~g~~~g~~~~~~l~~~~gw~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~  312 (423)
                      .|....+.-.|-.+|..++..++....+.  ..=.+......+..+..+++|..++..--...+++..      ...+..
T Consensus       132 t~y~RaA~L~g~~~g~vlaQlLvs~~~~sy~~LN~ISL~~~~ia~~~A~fLP~v~rSl~f~~~~~~~~v~~~e~~~~~~~  211 (433)
T KOG3810|consen  132 TGYCRAAFLVGKFVGSVLAQLLVSLETLSYTTLNYISLAEVTIAVLLALFLPRVKRSLYFHRLEDKISVGDLEEMNPQAS  211 (433)
T ss_pred             HHHhHHHHHHHhHHHhHHHHHHhhhcccchhhhchhhHHHHHHHHHHHhhCCCCchhhhhhcccccceeccchhcCccch
Confidence            99999999999999988888887653332  2222222223344555566666552211111110000      000000


Q ss_pred             hhhhHHhhccccCCCcHHHhhhcHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhhCC-ChhhHHHHHHHHHHHHHHHHHH
Q 014481          313 LSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSL-NLTEAAWVSILPPLASVLVTSI  391 (423)
Q Consensus       313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~-s~~~~~~~~~~~~~~~~~~~~~  391 (423)
                      ..+... .....-...+....+||.+....+...+...+++....+......+.-.- ...--|..=++..+.++++.+.
T Consensus       212 ~~~~l~-~~~~~l~~~l~~~y~np~ll~WSlWwAl~scg~~QV~nY~Q~LW~~~~~~~~~vyNG~veAv~tlLGa~~~~~  290 (433)
T KOG3810|consen  212 YMSYLR-GAFVLLWRDLQECYSNPRLLKWSLWWALASCGYYQVTNYTQILWKEVAPNPANVYNGAVEAVSTLLGAIAALA  290 (433)
T ss_pred             hhHHHH-HHHHHHHHHHHHHhcCchhhhhHHHHHHhhchhHHHHHHHHHHHHhhCCCchhhhcCHHHHHHHHHHHHHHHH
Confidence            000000 00000011244567888888888888888878887777776666553211 1112245556677777888888


Q ss_pred             HHHHhHHhhhc
Q 014481          392 AAQFADNLIAT  402 (423)
Q Consensus       392 ~g~l~dr~~~r  402 (423)
                      .|.+--++.|.
T Consensus       291 ~g~l~i~w~r~  301 (433)
T KOG3810|consen  291 AGYLNINWNRW  301 (433)
T ss_pred             HHheeeccchh
Confidence            88887665554

>PRK03612 spermidine synthase; Provisional

Probab=97.56  E-value=0.0053  Score=60.19  Aligned_cols=139  Identities=18%  Similarity=0.177  Sum_probs=82.8

Q ss_pred             hhhhhCCCcchhhHHHHHHHHHHHhhhhhhhhHhhHhcCchHHHHH-HHHHH-HHHHHHHH-hh--h-HHHHHHHHHHHH
Q 014481          140 MSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTG-VLIWS-LATALLPL-LA--G-FMPGLVLSRVLV  213 (423)
Q Consensus       140 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~-~~~~~-~~~~~~~~-~~--~-~~~~~~~~~~l~  213 (423)
                      +...+|.+....+.+.+++.++..+|+.+++++.++.-++...+-. ..+.+ +...+... ..  . ....++...++.
T Consensus        41 l~~~~G~s~~~~~~ii~~fl~glalGs~l~~~~~~~~~~~~~~~e~~i~l~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~  120 (521)
T PRK03612         41 ASYLLGDSVTQFSTVIGLMLFAMGVGALLSKYLLRDAAAGFVAVELLLALLGGLSALILYAAFAFQGLSRLLLYVLVLLI  120 (521)
T ss_pred             HHHHhCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4445788888899999999999999999998886443222221111 11111 11111101 11  1 111223344566


Q ss_pred             HhhcccchHhHHHHHHhcCCCCchhhHHHHHHhhhhhHHHHHHhhHHHhh-hccCchHHHHHHHHHH
Q 014481          214 GIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPII-ENLGWESVFYIFGLLG  279 (423)
Q Consensus       214 G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~-~~~gw~~~~~~~~~~~  279 (423)
                      ++..|+..|....+..+... ++-+...|-.+....+|+++|.++.+++. ...|-....++.+.+.
T Consensus       121 ~~l~G~~~Pl~~~~~~~~~~-~~~g~~~g~ly~~ntlGa~~G~l~~~~vLlp~lG~~~t~~~~a~l~  186 (521)
T PRK03612        121 GLLIGMEIPLLMRILQRIRD-QHLGHNVATVLAADYLGALVGGLAFPFLLLPRLGLIRTAALTGSLN  186 (521)
T ss_pred             HHHHHHHHHHHHHHHHhccc-cchhhhhhhhHhHHhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence            77777777777666654322 34567788888889999999999888765 4566544444444443

>KOG3097 consensus Predicted membrane protein [Function unknown]

Probab=97.44  E-value=0.025  Score=50.62  Aligned_cols=101  Identities=17%  Similarity=0.140  Sum_probs=65.0

Q ss_pred             HHHHHhhhhhhhhHhhHhcCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcccchHhHHHHHHhcCCC--Cc
Q 014481          159 FWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPL--EE  236 (423)
Q Consensus       159 ~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~i~~~~~~--~~  236 (423)
                      .+..+..+++.+.++.++|-|+++.++...+......-  .-+.+..++-.....|++.+..+..-.+++++.-..  +.
T Consensus        68 y~~l~~s~m~~~~~Ir~~g~K~tm~lav~~Y~lyiA~N--l~pr~~tlVPa~~~~G~aa~p~W~SkgtYlT~~g~~ya~~  145 (390)
T KOG3097|consen   68 YLSLIDSSMFMPLLIRFLGTKWTMVLAVFPYALYIAAN--LEPRYETLVPAGLVLGMAAGPIWASKGTYLTPMGQNYANQ  145 (390)
T ss_pred             hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhh--cchhHHhhccHHHhhccccccccccCcceecHHHHHHHHh
Confidence            33444555666689999999999998877765543222  234456788889999999998888777666655431  23


Q ss_pred             h---------hhHHHHHHhhhhhHHHHHHhhHHH
Q 014481          237 R---------SRAVSFVFGGLSFGSVAGLLLAPP  261 (423)
Q Consensus       237 r---------~~~~~~~~~~~~~g~~~g~~~~~~  261 (423)
                      |         .+..|.+.+.+..+...|..++..
T Consensus       146 ~~~q~~~~~~~~ffg~Ffii~~~~qv~gn~issl  179 (390)
T KOG3097|consen  146 RGEQAGDGMKVRFFGEFFIIFQCAQVWGNLISSL  179 (390)
T ss_pred             hhhhccCceeeeehhHHHHHHHHHHHHHHHHHHH
Confidence            3         345555555555555555444433

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=97.38  E-value=0.00038  Score=64.66  Aligned_cols=180  Identities=12%  Similarity=-0.028  Sum_probs=114.1

Q ss_pred             HHHHHHHHHHHHhhhhhhhhhHHHhhhhhCCCcchhhHHHHHHHHHHHhhhhhhhhHhhHhcC-chHHHHHHHHHHHHHH
Q 014481          116 IGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGG-RKVLQTGVLIWSLATA  194 (423)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~-r~~~~~~~~~~~~~~~  194 (423)
                      ++++.+++.......+.....+......-|.+....|++.....++.++++.+.|.+.||... |.+.++......++.+
T Consensus       268 F~il~~~ygi~~g~F~~l~~~l~~~l~~sgY~~~~aG~ig~l~iv~Gmlga~~~gii~Dktk~fk~~~~v~~~~~~v~~~  347 (480)
T KOG2563|consen  268 FIILAICYGIGLGLFNSLSTLLNLALCPSGYEGVFAGYIGALMIVAGMLGALASGIIADKTKKFKLTTLVLYLFALVGTL  347 (480)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHhhhccccccCCccccchhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence            444445554444444555555554555567777889999999999999999999999999865 5555555554444432


Q ss_pred             HHHHhh---hHHHHHHHHHHHHHhhcccchHhHHHHHHhcCCCCchhhHHHHHHhhhhhHHHHHHhhHHHhhhccC---c
Q 014481          195 LLPLLA---GFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLG---W  268 (423)
Q Consensus       195 ~~~~~~---~~~~~~~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g---w  268 (423)
                      ....++   ...+.++....+.|++..+..|...-+-.|..-|..-+.-.|+.+....+-+++-..+.+...+..+   |
T Consensus       348 ~l~~~t~~~~~~viv~~t~~~~g~~~~~~~Pig~ElgvE~TyPv~E~tSsGll~~~gq~f~~~~~~~~~~~~~~~~~~~~  427 (480)
T KOG2563|consen  348 MLLTCTLFLGDSVIVFTTCGLLGFFGTGYLPIGFELGVETTYPVAEGTSSGLLNLSGQIFGVILVFIMGILAEDLGPPGN  427 (480)
T ss_pred             HHHHhhccCCceEehhhhHHHHHHhhcCCCCcceeeeeeeccccCCcccceeEEeehhHHHHHHHHHHHHHhhccCCCCC
Confidence            221122   2224556666778888888888888877777655666677777777766666666677777766554   3


Q ss_pred             hH-HHHHHHHHHHHHHHHHHhhccCCcC
Q 014481          269 ES-VFYIFGLLGIAWFSGFKILQEGETS  295 (423)
Q Consensus       269 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~  295 (423)
                      .+ .-+......++.+++..+++++.++
T Consensus       428 ~~~~~i~~~~~~~l~~~lva~~r~~y~R  455 (480)
T KOG2563|consen  428 TFPANIFLTVSALLGAILVAFFRPDYRR  455 (480)
T ss_pred             CccchhHhHHHHHHHHHHHhhhhhhHHh
Confidence            33 3333444444455555566555443

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=97.12  E-value=0.002  Score=61.32  Aligned_cols=171  Identities=15%  Similarity=0.127  Sum_probs=105.7

Q ss_pred             hHHHHHHHHHHHHHHHhhhhhhhhh-HHHhhhhhCCCcchhhHHHHHHHHHHHhhh--hhhhhHhhH---hcCchHHHHH
Q 014481          112 RYKLIGTTSLAFVICNMDKVNLSVA-IIPMSHRFGWNSSVAGLVQSSFFWGYALSQ--LPGGWLAKI---FGGRKVLQTG  185 (423)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~--~~~g~l~dr---~G~r~~~~~~  185 (423)
                      .|...+.+.+..+...+........ -+.....++++.++.-+..+.......+.+  +......-|   +..|..+..+
T Consensus       260 d~~~~~vc~~~~~~~~~~~~~iet~~~~~~m~~y~w~~~~av~~~gi~~~~~g~ls~~~~l~~~f~~l~~i~~r~~~~~g  339 (488)
T KOG2325|consen  260 DWVAVLVCIFLRFVVNFIATTIETLSSALTMVMYGWTGSEAVLYNGITLSISGILSVILLLLYIFTRLGKIDKRRIILLG  339 (488)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHhccccchHHHhhhhHHHHHHHHHHHHHHHHHHHHhhhhccceeeeeh
Confidence            4566666666666666665554444 334556678877776555554333333222  222222333   3445555555


Q ss_pred             HHHHHHHHHHHHHh----h--------------------------hHHHHHHHH-HHHHHhhcccchHhHHHHHHhcCCC
Q 014481          186 VLIWSLATALLPLL----A--------------------------GFMPGLVLS-RVLVGIGEGVSPSAATDLIARSIPL  234 (423)
Q Consensus       186 ~~~~~~~~~~~~~~----~--------------------------~~~~~~~~~-~~l~G~~~~~~~~~~~~~i~~~~~~  234 (423)
                      .++......+....    +                          .+.+.++++ -++.|.+.........++.++...|
T Consensus       340 ~l~~f~~~~i~~yp~~~~s~pv~~~~~~~~~~~~~~y~wc~~~~~v~~~~~l~~~i~~~g~~~P~~~~~~~tlySkiLgp  419 (488)
T KOG2325|consen  340 FLIFFLSYYIFTYPWGFYSGPVQPYNTTYAGCDFEEYSWCDTTTAVPLILYLISFIVVFGIAFPFISTALDTLYSKILGP  419 (488)
T ss_pred             HHHHHHhhheeeeeccccccccccccccccCcCcccchhhccCcccChhhheeehhheeccccccccchHHHHHHHHhCC
Confidence            34333333222110    0                          011223333 3566777777777888999999999


Q ss_pred             CchhhHHHHHHhhhhhHHHHHHhhHHHhhhccCchHHHHHHHHHHHHH
Q 014481          235 EERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAW  282 (423)
Q Consensus       235 ~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw~~~~~~~~~~~~~~  282 (423)
                      ++++.+.+++......+..+||++...+....|.|+...+.+...++.
T Consensus       420 ~~q~~~qg~~~~~~s~~~~~~~~~~t~~~~~~g~~~v~~~~~~~~l~~  467 (488)
T KOG2325|consen  420 RDQGTMQGVFSISGSIARVVGPIFSTAIFTLSGPRPVWIILLCLLLVV  467 (488)
T ss_pred             ccccceeEEEEeccchhhhhhHHHHhhhHHhcCccHHHHHHHHHHHHH
Confidence            999999999999999999999999999998889887776665555444

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=97.06  E-value=0.0023  Score=61.41  Aligned_cols=149  Identities=15%  Similarity=0.038  Sum_probs=105.5

Q ss_pred             CCcchhhHHHHHHHHHHHhhhhhhhhHhhHhcCchHHHHHHHHHHHHHHHHHHhh---------hHHHHHHHHHHHHHhh
Q 014481          146 WNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLA---------GFMPGLVLSRVLVGIG  216 (423)
Q Consensus       146 ~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~l~G~~  216 (423)
                      .++...|.+..+..++..++..+...+.-+..-|+++.++.++.++..+.-..+.         ++.+..+..-++..+.
T Consensus       252 fs~~f~~~~~~vg~~~~l~g~~~y~~~~~~~~~R~~~~~t~~~~~~~~l~~~~lv~~~n~~~Gi~d~~f~lgd~~l~~~~  331 (433)
T PF03092_consen  252 FSPSFYGTLSIVGSIASLLGILLYRKYFSNWSWRRIFVVTTLVSVLASLFDLLLVTRWNLDLGIPDQWFALGDTILEEVI  331 (433)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcccEEEEEEEeeeeCcCCeEEEEEhHHHHHHH
Confidence            7888889998888889999999988888888888888888777665544321111         1112223334555555


Q ss_pred             cccchHhHHHHHHhcCCCCchhhHHHHHHhhhhhHHHHHHhhHHHhhhccCc--------hHHHHHHHHHHHHHHHHHHh
Q 014481          217 EGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGW--------ESVFYIFGLLGIAWFSGFKI  288 (423)
Q Consensus       217 ~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw--------~~~~~~~~~~~~~~~~~~~~  288 (423)
                      ....+-+...++++..|+..-|+.+++.....++|..++..++..+.+.++.        .+..++..++.++.+....+
T Consensus       332 ~~i~~mP~lvl~a~lcP~G~Egt~yall~s~~Nlg~~~s~~lg~~l~~~~~vt~~~f~~l~~lili~~~~~ll~l~ll~l  411 (433)
T PF03092_consen  332 GMIAFMPSLVLAARLCPKGSEGTVYALLASFSNLGSSVSSTLGAFLMELFGVTRDDFSNLWLLILICSVIQLLPLPLLFL  411 (433)
T ss_pred             HHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccchHHHHHHHHHHHHHHHHHHHH
Confidence            5666677788999999999999999999999999999999999998876552        23344445555444555556


Q ss_pred             hccCCc
Q 014481          289 LQEGET  294 (423)
Q Consensus       289 ~~~~~~  294 (423)
                      +|+..+
T Consensus       412 Lp~~~~  417 (433)
T PF03092_consen  412 LPPQKR  417 (433)
T ss_pred             cCCCch
Confidence            665443

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=96.96  E-value=0.0052  Score=57.52  Aligned_cols=126  Identities=17%  Similarity=0.177  Sum_probs=74.5

Q ss_pred             hCCCcchhhHHHHHHHHHHHhhhhhhhhHhhHhc----CchHHHHHHHHHHH------HH-HHHHHhhhHHHHHHHHHHH
Q 014481          144 FGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFG----GRKVLQTGVLIWSL------AT-ALLPLLAGFMPGLVLSRVL  212 (423)
Q Consensus       144 ~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G----~r~~~~~~~~~~~~------~~-~~~~~~~~~~~~~~~~~~l  212 (423)
                      .|.+..+.-++..++..+..+|.+++|.++||+.    +-....+..+..+.      .. .+....+.....+....++
T Consensus       278 ~~~~~~~~~ifg~vt~~~G~lGvl~Ggiisd~~~~~~~~~~~~~~~q~~~~~g~~~s~~~L~~~~~~~~~s~~~~~il~~  357 (493)
T KOG1330|consen  278 IGFDHNATLIFGGVTCAGGSLGVLFGGIISDKLSRIFPNSGTLRASQLSAALGAPLSIPFLFLFPAFTSSSMIFGLILFL  357 (493)
T ss_pred             hCCccccchhhhhHHHhhchhhheehHHHHHHHHHhcccccchhHHHHHHhhhhhHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence            3455556667777888999999999999999942    21222222211111      11 1111222222223333344


Q ss_pred             HHhhcc-cchHhHHHHHHhcCCCCchhhHHHHHHhhhhh-HHHHHHhhHHHhhhc-cCch
Q 014481          213 VGIGEG-VSPSAATDLIARSIPLEERSRAVSFVFGGLSF-GSVAGLLLAPPIIEN-LGWE  269 (423)
Q Consensus       213 ~G~~~~-~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-g~~~g~~~~~~l~~~-~gw~  269 (423)
                      .|.... ..+....-+..+..|+++|..++++-.....+ |..-+|.+.|.+.++ .||+
T Consensus       358 ~g~~~~~~~~a~n~~i~l~vV~p~~Rt~a~a~~~~~~h~fgd~~~p~ivGilsd~l~g~~  417 (493)
T KOG1330|consen  358 VGETISWFNWATNNPIFLEVVPPSRRTTAYALDTVFEHIFGDAASPYIVGILSDKLRGYK  417 (493)
T ss_pred             HHHHHHhcccccccceeeEecCcccccHHHHHHHHHHHHhccCCCcceehhHHHHhhCCC
Confidence            444332 33445566778888999999999997665554 555556588998876 4666

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.86  E-value=0.048  Score=51.99  Aligned_cols=144  Identities=17%  Similarity=0.186  Sum_probs=96.4

Q ss_pred             HHHHHHHHHHHhhhhhhhhhHHH---hhhhhCCCcc-hhhHHHHHHHHHHHhhhhhhhhHhh---HhcCchHHHHHHHHH
Q 014481          117 GTTSLAFVICNMDKVNLSVAIIP---MSHRFGWNSS-VAGLVQSSFFWGYALSQLPGGWLAK---IFGGRKVLQTGVLIW  189 (423)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~s~~-~~~~~~~~~~~~~~~~~~~~g~l~d---r~G~r~~~~~~~~~~  189 (423)
                      ..+....+..++..+.+....|.   +....+.+.. ..+.......++..++..+.+.+.+   ++|+++.+.++.++.
T Consensus       243 l~L~~~f~~tG~~~Sf~~~iypt~i~ft~~~~~n~~~~~ai~~~~~g~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~  322 (461)
T KOG3098|consen  243 LLLFPFFFYTGLETSFWISIYPTCISFTRKLGSNTTYLIAIYSIGIGLGEVIGGLDFSILSKRIRGFGRKPTVLIGIIIH  322 (461)
T ss_pred             HHHHHHHHHHHHHHHHHHhccchhhhhhhhccCcchhHHHHHHHHHhHHHHHHHHHHHHHhhhhhhcccCcchhHHHHHH
Confidence            34444455555555555555555   2223333322 2344444556666666677777765   579999999988887


Q ss_pred             HHHHHHHHHhh-----------------hHHHHHHHHHHHHHhhcccchHhHHHHHHhcCCCCchhhHHHHHHhhhhhHH
Q 014481          190 SLATALLPLLA-----------------GFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGS  252 (423)
Q Consensus       190 ~~~~~~~~~~~-----------------~~~~~~~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~  252 (423)
                      .++.++.....                 ++....+++-++.|++-+......+.++++.+| ++|..+.+++..-..++.
T Consensus       323 ~~~~~li~l~~p~dap~~~t~~~~~~~~~~~~~~~ii~~l~G~~D~~~~t~~~~ii~~~~~-~~~~~~fsi~kfyq~~~s  401 (461)
T KOG3098|consen  323 LIGFLLIHLSFPNDAPLRPTDSPPLLFTPSYYLALIIGFLLGFGDACFNTQRYVIIALLYP-DDRAQAFSLFKFYQSVAS  401 (461)
T ss_pred             HHHHHHHhccccccCCCCCCcccccccccchhHHHHHHHHHhhHHHHHHHHHHHHHHHHhc-CchHHHHHHHHHHHHHHH
Confidence            77765552211                 134567788899999999999999999999994 899999999888888887


Q ss_pred             HHHHhhHHH
Q 014481          253 VAGLLLAPP  261 (423)
Q Consensus       253 ~~g~~~~~~  261 (423)
                      .++-.....
T Consensus       402 ~v~~f~~~~  410 (461)
T KOG3098|consen  402 CVAFFFSPY  410 (461)
T ss_pred             HHHhhhhhh
Confidence            776555444

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=96.83  E-value=0.00028  Score=69.29  Aligned_cols=153  Identities=21%  Similarity=0.241  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHhhhhhhhhhHHH-hhhhhCCCcchhhHHHHHHHH-HHHhhhhhhhhHhhHhc--CchHHHHHHHH
Q 014481          113 YKLIGTTSLAFVICNMDKVNLSVAIIP-MSHRFGWNSSVAGLVQSSFFW-GYALSQLPGGWLAKIFG--GRKVLQTGVLI  188 (423)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~~~~~~~~-~~~~~~~~~g~l~dr~G--~r~~~~~~~~~  188 (423)
                      ...+....++.....+....+..+.|. ++.+|+.++++++++..+..+ +.++|.+++|++..|+.  .|..+.+..+.
T Consensus       304 Np~f~~~~la~~~~~~~~~G~~tF~pKylE~QF~~sas~A~~l~G~v~ip~~~~G~llGG~ivkk~kl~~~~~~~~~~v~  383 (539)
T PF03137_consen  304 NPVFMCLILAGVFESFIVSGFATFLPKYLESQFGLSASQASLLTGIVSIPGAALGILLGGYIVKKFKLSARGAAKFCIVV  383 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhhhhcchhheehheEEEEEEEecCcHHHHHHHHHHH
Confidence            355666777777777777788888887 667899999999998876655 66688899999999974  34444443333


Q ss_pred             HHHHHHH---HHHh----------h----------------------------------------hHHHHHHHHHHHHHh
Q 014481          189 WSLATAL---LPLL----------A----------------------------------------GFMPGLVLSRVLVGI  215 (423)
Q Consensus       189 ~~~~~~~---~~~~----------~----------------------------------------~~~~~~~~~~~l~G~  215 (423)
                      ..+..++   ..+.          .                                        +.+..+++..++.-+
T Consensus       384 ~~v~~~~~~~~~~~~C~~~~~aGv~~~y~~~~~~~~~~~~~~~Cn~~~~~~~~~a~~G~C~~~C~~~~~~Fl~~~~~~~~  463 (539)
T PF03137_consen  384 SIVSVILYSPLFFLGCPNPPIAGVTVPYHNSTSSSPSCNLTCSCNSCCSSGNGSATPGKCPSDCCNKLIPFLILLFILSF  463 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHeecCCCCceeeecCccccccCCCCCCCCCCCCCCccCCCcccccCCCcCcccccccHHHHHHHHHHHH
Confidence            3222222   0000          0                                        001223344444444


Q ss_pred             hcccchHhHHHHHHhcCCCCchhhHHHHHHh-hhhhHHHHHHhhHHHhhhc
Q 014481          216 GEGVSPSAATDLIARSIPLEERSRAVSFVFG-GLSFGSVAGLLLAPPIIEN  265 (423)
Q Consensus       216 ~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~-~~~~g~~~g~~~~~~l~~~  265 (423)
                      ..+.........+-..+++++|..++|+... ..-+|.+-||++.|.++|.
T Consensus       464 ~~~~~~~p~~~i~LR~V~~~~rs~AlGv~~~~~rllg~IPgPIifG~iiD~  514 (539)
T PF03137_consen  464 FTFMSQVPSTLITLRCVPPEQRSFALGVQWLIIRLLGFIPGPIIFGAIIDS  514 (539)
T ss_dssp             ---------------------------------------------------
T ss_pred             HHHhcccchheeeeccCChhhcchhhhHHHHHHHhhcCcchHHHHhHHHhh
Confidence            4444455555666677888999999999665 4557889999999999986

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>TIGR00805 oat sodium-independent organic anion transporter

Probab=96.82  E-value=0.0056  Score=61.83  Aligned_cols=79  Identities=19%  Similarity=0.201  Sum_probs=56.7

Q ss_pred             HHHHHHHHHHHHHhhhhhhhhhHHH-hhhhhCCCcchhhHHHHHHHH-HHHhhhhhhhhHhhHhcC--chHHHHHHHHHH
Q 014481          115 LIGTTSLAFVICNMDKVNLSVAIIP-MSHRFGWNSSVAGLVQSSFFW-GYALSQLPGGWLAKIFGG--RKVLQTGVLIWS  190 (423)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~~~~~~~~-~~~~~~~~~g~l~dr~G~--r~~~~~~~~~~~  190 (423)
                      .+....+..++.......+...+|. +++.+|+++.+++++.+...+ +.+++.+++|+++||++.  |+.+.++.++..
T Consensus       331 ~f~~~~l~~~~~~~~~~~~~~~lP~yl~~~~g~s~~~ag~l~~~~~i~~~~vG~~l~G~l~~r~~~~~~~~~~~~~~~~~  410 (633)
T TIGR00805       331 IYMLVILAQVIDSLAFNGYITFLPKYLENQYGISSAEANFLIGVVNLPAAGLGYLIGGFIMKKFKLNVKKAAYFAICLST  410 (633)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHhhhhhhhHHHHHHhhhhheeeeecccHHHHHHHHHHHHH
Confidence            3444555555555666666667777 455799999999999988776 678999999999999984  566666655544


Q ss_pred             HHH
Q 014481          191 LAT  193 (423)
Q Consensus       191 ~~~  193 (423)
                      ++.
T Consensus       411 ~~~  413 (633)
T TIGR00805       411 LSY  413 (633)
T ss_pred             HHH
Confidence            443

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism]

Probab=96.80  E-value=0.025  Score=52.52  Aligned_cols=172  Identities=16%  Similarity=0.077  Sum_probs=79.4

Q ss_pred             HHHHHHHHHHHHHhhhhhhhhhHHHhhhhhCCCcchhhHHHHHHHHHHHhhhhhhhhHhhHhcCchHHHHH--HHHHHHH
Q 014481          115 LIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTG--VLIWSLA  192 (423)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~--~~~~~~~  192 (423)
                      .....++..+-....++.+....+++.+++-.+.. .......+.+...+..++...+--+...|....++  ..+.++.
T Consensus        19 v~~i~~llGiG~LlpWN~fiTa~~y~~~~~~~~~~-~~~F~~~~~~~a~i~~ll~~~~n~~~~~~~~~~~~~~l~~~~il   97 (406)
T KOG1479|consen   19 VYLIFLLLGIGTLLPWNMFITASDYYYYRFPGYHN-SKNFTSSYTLAAQIPLLLFNLLNAFLNTRLRTRVGYLLSLIAIL   97 (406)
T ss_pred             HHHHHHHHhcccccchHhhhccHHHHHhhcCCCch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444445556677777777777766643333 33333344444444444444443333322222222  1111111


Q ss_pred             HH-HH-HHh-------hhHHHHHHHHHHHHHhhcccchHhHHHHHHhcCCCCchhhHHHHHHhhhhhHHHHHHhhHH---
Q 014481          193 TA-LL-PLL-------AGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAP---  260 (423)
Q Consensus       193 ~~-~~-~~~-------~~~~~~~~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~---  260 (423)
                      .+ .+ ...       ...+...++.-++.+++.+..........++ +|++.-    .-+..+.++++++..++.-   
T Consensus        98 ~i~~l~~~~v~~~~~~~~ff~vt~~~vv~~~~a~a~~qgs~~G~a~~-~P~~yt----qavm~G~a~aG~l~Sl~~i~tk  172 (406)
T KOG1479|consen   98 FIVTLDLALVKTDTWTNGFFLVTLIIVVLLNLANAVVQGSLYGLAGL-FPSEYT----QAVMSGQALAGTLTSLLRILTK  172 (406)
T ss_pred             HHHHHHHHhhccCCccchhHHHHHHHHHHHhhhhhhhccchhhhhhc-CCHHHH----HHHHhcchhHhHHHHHHHHHHH
Confidence            11 11 111       1234566677778888888887777777666 454433    3333344444444433321   


Q ss_pred             Hhhhc--cCchHHHHHHHHHHHHHHHHHHhhccC
Q 014481          261 PIIEN--LGWESVFYIFGLLGIAWFSGFKILQEG  292 (423)
Q Consensus       261 ~l~~~--~gw~~~~~~~~~~~~~~~~~~~~~~~~  292 (423)
                      ...+.  .+--..|.+..++.+++++....+++.
T Consensus       173 a~~~~~~~sA~~yF~~s~~~~llC~i~y~~l~~l  206 (406)
T KOG1479|consen  173 AAFSDSRTSALIYFITSTVILLLCFVLYLVLPKL  206 (406)
T ss_pred             HhcCCCCceeehhHHHHHHHHHHHHHHHHHhhcc
Confidence            11111  122333444444445555555544443

>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT)

Probab=96.75  E-value=0.076  Score=50.93  Aligned_cols=52  Identities=21%  Similarity=0.232  Sum_probs=36.6

Q ss_pred             HHHHHHHHHHHHHhhcccchHhHHHHHHhcCCCCchhhHHHHHHhhhhhHHHHHHhh
Q 014481          202 FMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLL  258 (423)
Q Consensus       202 ~~~~~~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~  258 (423)
                      .++..++.-++.|++.+.......++.+. +|+    ..++.+..+.+++++++.++
T Consensus       105 ~f~~~~~~v~~~g~~~~~~q~s~~gla~~-fp~----~~~~a~~~G~g~aGv~~s~~  156 (437)
T TIGR00939       105 FFVTTMASVVIINSGMALLQGSLFGLAGV-FPS----TYSSAVMSGQGLAGVLTSLA  156 (437)
T ss_pred             HHHHHHHHHHHHHhhhhhhcccchhhccc-CCH----HHHHHHHhcchhHHHHHHHH
Confidence            45667777788899988888887777764 553    35666666777777666554

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=96.74  E-value=0.016  Score=55.16  Aligned_cols=141  Identities=18%  Similarity=0.087  Sum_probs=97.3

Q ss_pred             HHHHHHHHhhhhhhhhhHHHhhhhhCCCcchhhHHHHHHHHHHHhhhhhhhhHhhHhcCchHHHHHHHHHHHHHHHHH--
Q 014481          120 SLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLP--  197 (423)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~--  197 (423)
                      .++..+.++..-.+......+...-|+++..+|..-+...+....+.+...++.+|+|..+.-+++...-.+...++.  
T Consensus       264 s~alalLY~TVLsf~~lmt~yl~~~G~s~~~igi~R~~gav~Gl~gT~~~p~l~~riGlvr~G~~~l~~q~~~L~~~v~~  343 (432)
T PF06963_consen  264 SFALALLYFTVLSFGGLMTAYLKSQGYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRIGLVRAGLWSLWWQWVCLALCVVS  343 (432)
T ss_pred             HHHHHHHHHHHhcCcHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHH
Confidence            333333333333344455555556699999999999999999999999999999999999988887654333222211  


Q ss_pred             -Hhhh------HHHHHHHHHHHHHhhcccchHhHHHHHHhcCCCCchhhHHHHHHhhhhhHHHHHHhhHH
Q 014481          198 -LLAG------FMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAP  260 (423)
Q Consensus       198 -~~~~------~~~~~~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~  260 (423)
                       +...      +...++.+-++.=+|.=+..-...-++-|..|+++||...|.-....++-.++-..++-
T Consensus       344 ~~~~~~~~~~~s~~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~~~Rg~v~gvq~sl~~lf~ll~~~~~i  413 (432)
T PF06963_consen  344 FWAPGSPFSSISAYLLLGGIALSRIGLWSFDLAVTQIMQENVPESERGAVSGVQNSLQSLFELLSFVLTI  413 (432)
T ss_pred             HhcCCCCchhhHHHHHHHHHHHHHHHHHhhhHHHHHhhcccCCHHHhhHHHHHHHHHHHHHHHHHHHHHh
Confidence             1111      22234444444445555666777888899999999999999998888888777766644

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=96.48  E-value=0.0019  Score=61.46  Aligned_cols=71  Identities=20%  Similarity=0.227  Sum_probs=58.1

Q ss_pred             HHHHHHhhhhhhhhhHHHhhhhhCCCcchhhHHHHHHHHHHHhhhhhhhhHhhHhcCchHHHHHHHHHHHH
Q 014481          122 AFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLA  192 (423)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~  192 (423)
                      .++..+.....+.+.++.+.+++|+++.+.|.+...-.+..+++.|++|.++||+-+||.++++.++..+.
T Consensus        19 f~~~~~~~~g~l~pll~vy~kQLGl~p~~~Gtl~g~~P~v~~L~~P~~g~~Adr~r~~r~lllgsl~~~v~   89 (618)
T KOG3762|consen   19 FYLFFGARFGSLFPLLAVYFKQLGLNPAVVGTLTGTLPLVEFLAAPLWGFLADRYRKRRPLLLGSLLLSVT   89 (618)
T ss_pred             eeeeeeecccccchHHHHHHHHcCCCHHHhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCchhHHHHHHHHH
Confidence            34444455667778888899999999999999999999999999999999999998887777765544443

>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT)

Probab=96.22  E-value=0.15  Score=48.97  Aligned_cols=109  Identities=15%  Similarity=-0.029  Sum_probs=71.0

Q ss_pred             hHHHHHHHHHHHhhhhhhhhHhhHhcCc--hHHHHH--HHHHHHHHHHHHHh--------hhHHHHHHHHHHHHHhhccc
Q 014481          152 GLVQSSFFWGYALSQLPGGWLAKIFGGR--KVLQTG--VLIWSLATALLPLL--------AGFMPGLVLSRVLVGIGEGV  219 (423)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~g~l~dr~G~r--~~~~~~--~~~~~~~~~~~~~~--------~~~~~~~~~~~~l~G~~~~~  219 (423)
                      -.....+.++-.+|..+..+.. .-++|  .+++.+  =+++....+++..-        -++-+..++..++.|+..|.
T Consensus       310 ~i~~~~fNvgD~vGR~~~~~~~-~p~~~~~~l~i~s~~R~iFIPlf~lcn~~~~~~~p~~~~~d~~~~~~~~l~gltnGy  388 (437)
T TIGR00939       310 IICFLLFNLFDWLGRSLTSKFM-WPDEDSRWLPILSFLRVLFIPLFLLCNYPQRSRLPVFFPGDAYFIILMLLFGFSNGY  388 (437)
T ss_pred             HHHHHHHHHHHHHHhhhhheeE-eeCCCccchHHHHHHHHHHHHHHHHhcCCccccCCeeecccHHHHHHHHHHHHhhhH
Confidence            4555667777777776554321 11222  333222  12222222232111        12336677778999999999


Q ss_pred             chHhHHHHHHhcCCCCchhhHHHHHHhhhhhHHHHHHhhHHH
Q 014481          220 SPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPP  261 (423)
Q Consensus       220 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~  261 (423)
                      .....+.+..+..++++|..+-.+...+..+|..+|..++-.
T Consensus       389 ~~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~l~~~  430 (437)
T TIGR00939       389 LGSLSMCLAPRQVDPHEREVAGALMVIFLLVGLALGAVLSFL  430 (437)
T ss_pred             HHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999888877543

>KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only]

Probab=95.92  E-value=0.081  Score=47.01  Aligned_cols=138  Identities=17%  Similarity=0.108  Sum_probs=89.1

Q ss_pred             hhHHHHHHHHHHHhhhhhhhhHhhHhcCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcccchHhHHHHHHh
Q 014481          151 AGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIAR  230 (423)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~i~~  230 (423)
                      .|.+.-+-.+...+..+.+..+.||+..-.-..+..++.+.+.++. +++++.+.-+.+-.+..++.|.......++-+ 
T Consensus        64 tg~VLLaDilPsL~iKl~~Pff~~rfpf~~Ri~~~v~~sa~s~~lV-afs~s~~~sL~GV~~aSissGlGEiTFL~lss-  141 (409)
T KOG3880|consen   64 TGAVLLADILPSLAIKLTAPFFIHRFPFGFRIALVVLLSALSFFLV-AFSNSVPMSLLGVVFASISSGLGEITFLALSS-  141 (409)
T ss_pred             cchhhhhhhhHHHHHHHhchhhhhhcccchHHHHHHHHHhcceEEE-EeccchhHHHhhhhhhhhcCCcceeehhhhhc-
Confidence            4666666677777777888888888654333334445555555555 57787788888888888887766555444433 


Q ss_pred             cCCCCchhhHHHHHHhhhhhHHHHHHhhHHHhhhc--cCchHHHHHHHHHHHHHHHHHHhhccCCc
Q 014481          231 SIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIEN--LGWESVFYIFGLLGIAWFSGFKILQEGET  294 (423)
Q Consensus       231 ~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~--~gw~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (423)
                      .++    ....+.++.+.+.++++|..--..+.+.  ..-|.+.++...+-++.+...+++.+.++
T Consensus       142 ~Y~----~~~i~~WSSGTGgAGliGa~SYa~lT~~~~~spk~Tlli~l~lP~lfa~~yf~lL~~pe  203 (409)
T KOG3880|consen  142 RYP----SIVIAGWSSGTGGAGLIGASSYAFLTSWANLSPKSTLLIMLFLPALFAFAYFFLLKSPE  203 (409)
T ss_pred             cCC----CceeccccCCCCcchhhhhhHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHHheeCCCc
Confidence            233    3456667777788888887766666653  34677777777766666555555544443

>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]

Probab=95.64  E-value=0.045  Score=54.90  Aligned_cols=151  Identities=17%  Similarity=0.197  Sum_probs=98.3

Q ss_pred             HHHHHHHHHHHHHhhhhhhhhhHHH-hhhhhCCCcchhhHHHHHHHH-HHHhhhhhhhhHhhHhc--CchHHHHHHHHHH
Q 014481          115 LIGTTSLAFVICNMDKVNLSVAIIP-MSHRFGWNSSVAGLVQSSFFW-GYALSQLPGGWLAKIFG--GRKVLQTGVLIWS  190 (423)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~~~~~~~~-~~~~~~~~~g~l~dr~G--~r~~~~~~~~~~~  190 (423)
                      ++....++..+.......+..++|. +.++||.+.+.+..+.+...+ +.++|..++|++..|+-  .|....+.++...
T Consensus       393 if~~~~l~~~~~~~~~~G~~tFlPKyLE~Qfg~sas~An~l~G~i~vp~~~~Gi~lGG~iikkfkl~~r~~a~~~~~~~~  472 (735)
T KOG3626|consen  393 IFMLVVLASVIESLAITGYITFLPKYLETQFGISASLANILTGSIGVPAAAVGIFLGGLIIKKFKLSARGAAKFVIVCSV  472 (735)
T ss_pred             hHHHHHHHHHHHHHHHhhHHHhhHHHHHHHcCCCHHHHHHHhhhhhhhhhhhhhhccceeeeeecccHHHHHHHHHHHHH
Confidence            4566677777777777777888887 566799999999998865554 45577788999999874  3444444444333


Q ss_pred             HHHHHHH--Hh------------------------------------------------------------------h--
Q 014481          191 LATALLP--LL------------------------------------------------------------------A--  200 (423)
Q Consensus       191 ~~~~~~~--~~------------------------------------------------------------------~--  200 (423)
                      +..+...  ++                                                                  .  
T Consensus       473 l~l~~~~~~~~igC~~~~~aG~~~~y~~~~~~~~~~~~~s~Cn~~C~C~~~~~~PVCg~~G~tY~SpChAGC~~~~~~~~  552 (735)
T KOG3626|consen  473 LSLLFYSLLFFIGCESSPVAGVTNSYEGSPAFTSHENPFSSCNSDCSCDTSEYEPVCGENGITYFSPCHAGCTESSGTSD  552 (735)
T ss_pred             HHHHHHHHHHEecCCCCcccceecCCCCCCccccCCCchhhhhcCCCCCCcCcCcccCCCCCEEeChhhhCCcccccCCC
Confidence            3332210  11                                                                  0  


Q ss_pred             -----------h--------------------HHHHHHHHHHHHHhhcccchHhHHHHHHhcCCCCchhhHHHHHHh-hh
Q 014481          201 -----------G--------------------FMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFG-GL  248 (423)
Q Consensus       201 -----------~--------------------~~~~~~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~-~~  248 (423)
                                 +                    .+..+++..++.-+..+...+..+.++-..+++++|..++|+..+ ..
T Consensus       553 ~~~~ytnCsCv~~~~~~~~~a~~G~C~~~c~~~~~~Fl~~~~~~sf~~~~~~~p~~~i~LR~V~~e~ks~AlG~~~~~ir  632 (735)
T KOG3626|consen  553 GNTIYTNCSCVPTNKNGNGSAKKGYCPNDCCRQFLIFLALFAIGSFIGALGAVPGMLIVLRCVPPEEKSFALGFQWMLIR  632 (735)
T ss_pred             CceeeccccccccccCCCceeecCCCCCCcchhhHHHHHHHHHHHHHHHhccCcceEEEEEccCchhchhhhHHHHHHHH
Confidence                       0                    011233333333333344445556666777899999999999655 55


Q ss_pred             hhHHHHHHhhHHHhhhc
Q 014481          249 SFGSVAGLLLAPPIIEN  265 (423)
Q Consensus       249 ~~g~~~g~~~~~~l~~~  265 (423)
                      -+|.+-+|++-|+++|.
T Consensus       633 llg~IPsPIifG~~ID~  649 (735)
T KOG3626|consen  633 LLGFIPSPIIFGAVIDT  649 (735)
T ss_pred             HHhcCCchHhhhhhHhh
Confidence            57999999999999984

>KOG4830 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=95.48  E-value=0.0038  Score=53.59  Aligned_cols=65  Identities=11%  Similarity=0.058  Sum_probs=51.8

Q ss_pred             HHHHHHHHHHhhhhhhhhhHHHhhhhhCCCcchhhHHHHHHHHHHHhhhhhhhhH---------hhHhcCchHH
Q 014481          118 TTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWL---------AKIFGGRKVL  182 (423)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l---------~dr~G~r~~~  182 (423)
                      ...++.+.+-+..+.+..++-.+.++.|.++.....++.+..+.-++..++.|..         .||+|||+..
T Consensus        21 ~yGvGHmlNDitAScWFTYlllfltqiglsp~~~AmlML~GQVtda~st~ftGi~~d~nll~~~idr~G~~~~w   94 (412)
T KOG4830|consen   21 AYGVGHMLNDITASCWFTYLLLFLTQIGLSPSSRAMLMLIGQVTDAISTPFTGIFSDSNLLPACIDRIGRRMSW   94 (412)
T ss_pred             eechhHHHhhHHHHHHHHHHHHHHHHhcCCcchhHHHHHhhHHHHHHhcccccccccccccHHHhhhhcceeee
Confidence            4566777777777777777777888999999888888888888888888887643         5789998765

>PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs

Probab=95.16  E-value=0.0068  Score=55.41  Aligned_cols=107  Identities=21%  Similarity=0.177  Sum_probs=3.8

Q ss_pred             HHHHHHHHHHHhhhhhhhhHhhH-hcCchHHHHH--HHHHHHHHHHHH-Hh---------hhHHHHHHHHHHHHHhhccc
Q 014481          153 LVQSSFFWGYALSQLPGGWLAKI-FGGRKVLQTG--VLIWSLATALLP-LL---------AGFMPGLVLSRVLVGIGEGV  219 (423)
Q Consensus       153 ~~~~~~~~~~~~~~~~~g~l~dr-~G~r~~~~~~--~~~~~~~~~~~~-~~---------~~~~~~~~~~~~l~G~~~~~  219 (423)
                      ..+..+.++-.+|..+.++..=+ ..+|+.++.+  -+++ +..++++ ..         -++-+..++..++.|+..|-
T Consensus       186 ~~fl~Fn~gD~iGR~l~~~~~~~~~~~~~l~~~s~~R~~f-iPlf~~cn~~p~~~~~~~~~~~d~~~~i~~~l~g~TNGy  264 (309)
T PF01733_consen  186 VLFLLFNLGDFIGRFLASWPRWPGPSPRWLWILSLLRFLF-IPLFLLCNVQPRPRYLPVLFNSDAWFIILMLLFGFTNGY  264 (309)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHhcchhcceeEecccccccHHHHHHHHHHH-HHHHHHHHhhcccccCCCcccchHHHHHHHHHHHHccch
Confidence            34567888888888877764211 1344444332  1222 2222221 11         12335677778899999999


Q ss_pred             chHhHHHHHHhcCCCCchhhHHHHHHhhhhhHHHHHHhhHH
Q 014481          220 SPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAP  260 (423)
Q Consensus       220 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~  260 (423)
                      .....+.+..+..++++|..+-.+...+..+|..+|..++-
T Consensus       265 l~tl~m~~~p~~v~~~e~e~aG~~~~~~L~~Gl~~Gs~ls~  305 (309)
T PF01733_consen  265 LSTLAMMYAPKSVSPEERELAGSVMSFFLSFGLFIGSVLSF  305 (309)
T ss_dssp             --HHHH-----------------------------------
T ss_pred             hhhceeeeCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999988888888888888877654

Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A.

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=94.48  E-value=0.2  Score=47.07  Aligned_cols=99  Identities=15%  Similarity=0.045  Sum_probs=69.9

Q ss_pred             cchhhHHHHHHHHHHHhhhhhhhhHhhHhcCchHHHHHHH-HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcccchHhHHH
Q 014481          148 SSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVL-IWSLATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATD  226 (423)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~  226 (423)
                      ..--|.+-++..+...++.+..|++..++.+-.-+.++.+ +...+.++....+++.|..+++.++.+.......+.+..
T Consensus       284 ~vYNG~VeA~~tllgA~~al~~g~v~~~w~~~~~l~l~~~S~l~a~~L~lm~~t~~Iwv~Y~~yIif~~~y~fliTiA~~  363 (412)
T PF01770_consen  284 SVYNGAVEAASTLLGAIAALLAGYVKVNWDRWGELALGVFSLLQAGLLFLMSFTGNIWVCYAGYIIFRSLYMFLITIASF  363 (412)
T ss_pred             cccchHHHHHHHHHHHHHHHHHhHhhcchHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3345888888889999999999999666665444433322 222333334467788898888888888887888888888


Q ss_pred             HHHhcCCCCchhhHHHHHHh
Q 014481          227 LIARSIPLEERSRAVSFVFG  246 (423)
Q Consensus       227 ~i~~~~~~~~r~~~~~~~~~  246 (423)
                      -++.....+.-|..+|+...
T Consensus       364 qIA~~l~~e~yaLVFGiNtf  383 (412)
T PF01770_consen  364 QIAKNLSEERYALVFGINTF  383 (412)
T ss_pred             HHHHhccccceeeeeeeHHH
Confidence            88888876777777776544

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=94.38  E-value=0.38  Score=44.14  Aligned_cols=39  Identities=10%  Similarity=0.072  Sum_probs=36.1

Q ss_pred             hhCCChhhHHHHHHHHHHHHHHHHHHHHHHhHHhhhcCC
Q 014481          366 ELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGV  404 (423)
Q Consensus       366 ~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~r~~  404 (423)
                      .+|++..+.+.++....+.+++...+.|.+.||+|||+.
T Consensus        63 ~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~  101 (354)
T PF05631_consen   63 SYGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKA  101 (354)
T ss_pred             HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHH
Confidence            589999999999999999999999999999999999854

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=94.11  E-value=0.63  Score=36.05  Aligned_cols=38  Identities=13%  Similarity=0.210  Sum_probs=28.0

Q ss_pred             HhhhhhHHHHHHhhHHHhhhccCchHHHHHHHHHHHHH
Q 014481          245 FGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAW  282 (423)
Q Consensus       245 ~~~~~~g~~~g~~~~~~l~~~~gw~~~~~~~~~~~~~~  282 (423)
                      .....++..++.++.+.+.|+.|.|..+........+.
T Consensus         4 ~~~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~   41 (141)
T TIGR00880         4 LAGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLS   41 (141)
T ss_pred             EEeehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHH
Confidence            34567788888999999999999888776655544443

>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]

Probab=94.05  E-value=0.26  Score=47.13  Aligned_cols=65  Identities=11%  Similarity=-0.004  Sum_probs=50.2

Q ss_pred             HHHHHHHHHHhhcccchHhHHHHHHhcCCCCchhhHHHHHHhhhhhHHHHHHhhHHHhhhccCch
Q 014481          205 GLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWE  269 (423)
Q Consensus       205 ~~~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw~  269 (423)
                      .+++.-++..+.....+.+.++.-+.+.+|.-=|++|.+.++..++|+---..+.-+++|.+.++
T Consensus       407 lvI~~~~l~sf~stvmFVai~AFharISDP~IGGTYMTLLNTvSNLGGtWP~~~vL~lVD~fT~~  471 (544)
T PF13000_consen  407 LVIIQHVLSSFMSTVMFVAIMAFHARISDPAIGGTYMTLLNTVSNLGGTWPRTFVLWLVDYFTVA  471 (544)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhccCcccchHHHHHHHHHHhcCCCchHHHHHHHhhhcccc
Confidence            44555667777777888899999999999999999999999999999765555555555554444

This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane

>PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS)

Probab=93.92  E-value=0.067  Score=46.49  Aligned_cols=101  Identities=16%  Similarity=0.140  Sum_probs=55.9

Q ss_pred             CchhhHHHHHHhhhhhHHHHHHhhHHHh---hh--ccCchHHHHHHHHHHHHHHHHHHhhccCCcCcCCCCCcchhhhhh
Q 014481          235 EERSRAVSFVFGGLSFGSVAGLLLAPPI---IE--NLGWESVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINM  309 (423)
Q Consensus       235 ~~r~~~~~~~~~~~~~g~~~g~~~~~~l---~~--~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  309 (423)
                      ++|+....+...++++|.++....--.-   .+  ...|++.+.+.+++.++-+++...+-.+-.....+ +++++.   
T Consensus         2 k~K~~~s~~n~~gf~iG~ii~~ipF~~~~~~~~~~~~~W~~I~si~~lL~~IpLIly~ifGk~fd~~~~~-~k~~k~---   77 (267)
T PF07672_consen    2 KKKSILSQFNPWGFNIGTIIVNIPFLISSSVVIALTNNWQWILSIFILLIFIPLILYIIFGKNFDIYSPK-EKQEKE---   77 (267)
T ss_pred             CccceeeeeccccchhhHHHHHhhHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcc-cccccc---
Confidence            5666666677777888877764432111   11  23599999998888877666666653322111111 000000   


Q ss_pred             hhhhhhhHHhhccccCCCcHHHhhhcHHHHHHHHHHHHHH
Q 014481          310 KKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGS  349 (423)
Q Consensus       310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  349 (423)
                                ..+..++....+.+|++..|..++.+....
T Consensus        78 ----------~~~~~~~~s~~~~LK~K~tw~w~~~Yg~wL  107 (267)
T PF07672_consen   78 ----------NSTLSKKPSYKSILKEKETWKWILIYGIWL  107 (267)
T ss_pred             ----------cccccccchHHHHHccchHHHHHHHHHHHh
Confidence                      001112235688999999887766655443

>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=93.79  E-value=0.95  Score=39.74  Aligned_cols=133  Identities=16%  Similarity=0.044  Sum_probs=83.2

Q ss_pred             hhHHHHHHHHHHHhhhhhhhhHhhHhcCc--hHHHHHHHHHHHHHHHHHHhhh-------HHHHHHHHHHHHHhhcccch
Q 014481          151 AGLVQSSFFWGYALSQLPGGWLAKIFGGR--KVLQTGVLIWSLATALLPLLAG-------FMPGLVLSRVLVGIGEGVSP  221 (423)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~g~l~dr~G~r--~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~l~G~~~~~~~  221 (423)
                      -|.+++.+++..++|+-+..++..|-.+|  ..+.+..++.++...+. ..+.       +...-+++..+.-.+.|..+
T Consensus       284 hGfiFatFMlASmLGSSla~Rl~s~s~~~ve~ymqivf~vs~a~l~Lp-ilt~~vsP~kes~~~s~i~F~~~E~cvGlfw  362 (454)
T KOG4332|consen  284 HGFIFATFMLASMLGSSLASRLLSRSSPKVESYMQIVFLVSIAALLLP-ILTSSVSPSKESPSESLIGFCLFEACVGLFW  362 (454)
T ss_pred             chhHHHHHHHHHHHhhHHHHHHHhcCCcccchHHHHHHHHHHHHHHHH-HHHhccCCCcCCchHHHHHHHHHHHHHhhcc
Confidence            58999999999999999998888775554  34444444443333222 2211       11223445556667778999


Q ss_pred             HhHHHHHHhcCCCCchhhHHHHHHhhhhhHHHHHHhhHHHhhhccCchHHHHHHHHHHHHHHH
Q 014481          222 SAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFS  284 (423)
Q Consensus       222 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw~~~~~~~~~~~~~~~~  284 (423)
                      |..+.+=.++.|++.|...+.++..-.++-..++-..--.-....+-|..|-++.+...+..+
T Consensus       363 PSimkmRsqyIPEearstimNfFRvPLnifvClvLynlh~~~~p~~tr~mf~icS~~~~~a~i  425 (454)
T KOG4332|consen  363 PSIMKMRSQYIPEEARSTIMNFFRVPLNIFVCLVLYNLHVDAFPTTTRNMFGICSAFLFVASI  425 (454)
T ss_pred             hHHHHHHHhhCCHHHHhhhhhheechhhHhhhhhheecccccCccccchhhhhhHHHHHHHHH
Confidence            999999999999999999999877655554333321100000112456777777666655433

>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters

Probab=93.64  E-value=0.25  Score=35.01  Aligned_cols=53  Identities=17%  Similarity=0.315  Sum_probs=44.4

Q ss_pred             HHHHHHHHhhhhHHHHHhhCCChhhHHHHHHHHHHHHHHHHHHHHHHhHHhhhc
Q 014481          349 SWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIAT  402 (423)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~r  402 (423)
                      ..+-+.+...+|...++ .++|..+++++.+...++..+|.+...++.++..++
T Consensus         5 GigRFayTplLP~M~~~-~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~   57 (85)
T PF06779_consen    5 GIGRFAYTPLLPLMQAD-GGLSLSQAGWLASANYLGYLVGALLASRLPRHSRPR   57 (85)
T ss_pred             hhHHHHHHhHhHHHHHh-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHH
Confidence            34566677788888876 699999999999999999999999999988875544

Note that many members are hypothetical proteins.

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=93.53  E-value=7.8  Score=37.66  Aligned_cols=74  Identities=19%  Similarity=0.149  Sum_probs=57.5

Q ss_pred             HHHHHHhhcccchHhHHHHHHhcCC-CCchhhHHHHHHhhhhhHHHHHHhhHHHhhhccCchHHHHHHHHHHHHH
Q 014481          209 SRVLVGIGEGVSPSAATDLIARSIP-LEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAW  282 (423)
Q Consensus       209 ~~~l~G~~~~~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw~~~~~~~~~~~~~~  282 (423)
                      .-++.|+.........-..+.+.+| +++|...+|-+....++..++..++++.+.++.||.....+.-++.++.
T Consensus       272 ~vi~y~~~~nlve~~~k~~v~~~~p~~~~~~~f~g~~~~~~gi~tl~~~l~~~~l~~~~Gw~~~a~i~Pii~lit  346 (472)
T TIGR00769       272 LVIAYGISINLVEVTWKSKLKAQYPSPNEYSAFMGDFSTWTGVVSVTMMLLSGNVIRKYGWLTAALITPLVMLLT  346 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence            3445566666777777778888886 4568999999999888888888888899999999998887776666553

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only]

Probab=92.05  E-value=1.1  Score=40.06  Aligned_cols=65  Identities=22%  Similarity=0.085  Sum_probs=52.3

Q ss_pred             HhhhHHHHHHHHHHHHHhhcccchHhHHHHHHhcCCCCchhhHHHHHHhhhhhHHHHHHhhHHHh
Q 014481          198 LLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPI  262 (423)
Q Consensus       198 ~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l  262 (423)
                      .+.+++|..++.-+.-|+-.|..+....--+.+-.++++|..+++.....-.+|..++.+++-.+
T Consensus       337 ~ftpsi~ivf~lI~~EGLlGGasYVNTf~~i~~e~~pd~rEfamsavs~sDS~Gi~lA~~lalpl  401 (409)
T KOG3880|consen  337 WFTPSIWIVFALILFEGLLGGASYVNTFHNIHKETEPDVREFAMSAVSISDSIGIFLAGLLALPL  401 (409)
T ss_pred             HhccHHHHHHHHHHHHhhcCchHHHHHHHHHhhcCCchHHHHhHhhheecchhhHHHHHHHhccc
Confidence            35566777777888889888888888777777778889999999999999888888877766443

>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function

Probab=91.91  E-value=7.3  Score=34.19  Aligned_cols=39  Identities=8%  Similarity=-0.187  Sum_probs=21.6

Q ss_pred             HHHHHHHHHHHHHHHhhhhHHHHHhh----CCChhhHHHHHHH
Q 014481          342 IYAHFCGSWGHYTCLSWLPTYFSEEL----SLNLTEAAWVSIL  380 (423)
Q Consensus       342 ~l~~~~~~~~~~~~~~~~~~~~~~~~----g~s~~~~~~~~~~  380 (423)
                      .+...+.....++....=..|++++.    |.+.....++++-
T Consensus       184 G~~LAv~aGvlyGs~fvPv~Yi~~~~~~y~~as~~~ldYvFs~  226 (254)
T PF07857_consen  184 GIILAVFAGVLYGSNFVPVIYIQDHPDIYPGASQNGLDYVFSH  226 (254)
T ss_pred             hHHHHHHHHHHHhcccchHHHHHhCccccCCCCCcchheeHHH
Confidence            34444445566776666667777753    3444444444443

The region concerned is approximately 280 residues long.

>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]

Probab=91.64  E-value=1.3  Score=42.06  Aligned_cols=128  Identities=18%  Similarity=0.045  Sum_probs=78.2

Q ss_pred             hHHHHHHHHHHHhhhhhhhhHhhHhcCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcccchHhHHHHHHhc
Q 014481          152 GLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARS  231 (423)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~i~~~  231 (423)
                      .|-..++.+...+.+....++.+|+|-|+.+..+...+.++..+.+ ...+.+....-+-..|+-.+......+..++.+
T Consensus       335 ~~GL~ins~~lgi~S~~~~~l~~~~g~r~~y~~~~~~f~~~~~~~g-l~~~~~~~~~~~~~~G~~~~~~~~~p~~l~~~y  413 (498)
T KOG0637|consen  335 CLGLMLNSIVLGIYSLLVEKLSRKFGTRKRYWGGVNAFGLATGLAG-LVLNTYVVLSHRSTAGILSSPLLTVPYGALALY  413 (498)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhcCcceEEeehhHHHHHHHHHHh-hhhhHHHHHHHHhhcceeecchhcccHHHHHHH
Confidence            4666778888889999999999999966666666554555554442 334445556666666654444444433333332


Q ss_pred             CC-----------------------CCchhhHHHHHHhhhhhHHHHHHhhHHHhhhccC-chHHHHHHHHHHH
Q 014481          232 IP-----------------------LEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLG-WESVFYIFGLLGI  280 (423)
Q Consensus       232 ~~-----------------------~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g-w~~~~~~~~~~~~  280 (423)
                      ..                       ...+|...|+.+....+..++..+..|.+.+..| -+.+-.+.++.++
T Consensus       414 ~~~g~~~a~t~~~pf~~~s~~~~~sg~g~G~~~gvln~~I~ipQvivs~~~Gp~~~~~G~~~~~~~~~~a~s~  486 (498)
T KOG0637|consen  414 AILGIPLAITFSIPFALASIEIGNSGLGQGLDLGVLNCAIVIPQVLVSLGLGPLDQLFGGGNLPAFVSGAVAL  486 (498)
T ss_pred             HHhCCccccccccccccccccccCccCCCCceeeeeeeeeeehhheeeccccchhhhcCCcchhHHHHHHHHH
Confidence            21                       1124566677778888888887777777776654 3444444444433

>KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism]

Probab=91.27  E-value=0.36  Score=45.11  Aligned_cols=109  Identities=16%  Similarity=0.024  Sum_probs=71.3

Q ss_pred             hhHHHHH-HHHHHHhhhhhhhhHhhHhcCchHHHHHHHHHHHHHHHHHH------hhhHHHHHHHHHHHHHhhcccchHh
Q 014481          151 AGLVQSS-FFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPL------LAGFMPGLVLSRVLVGIGEGVSPSA  223 (423)
Q Consensus       151 ~~~~~~~-~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~l~G~~~~~~~~~  223 (423)
                      .-..... +.+...+|.+.+.++-+.-.|+..+....=+..+-.+.++-      .-.+-+++++.-.+.|+..|-....
T Consensus       284 ~~~~~~l~fN~~d~vG~~~a~~~~~~~~r~l~i~v~lR~lfiPlF~~cn~~~~~v~~~~~~~~~~l~~~lglsnGYltsl  363 (406)
T KOG1479|consen  284 ALLLVFLSFNVFDLIGSILAALLTWPDPRKLTIPVLLRLLFIPLFLLCNYPPLPVVFESDGWFIFLMSLLGLSNGYLTSL  363 (406)
T ss_pred             HHHHHHHHhHHHHHhhhhhhhcccCCCCceehHHHHHHHHHHHHHHHhccCCCCceecCchHHHHHHHHHHhccchHhhh
Confidence            3444445 77888888776666655533333322222222233322111      1223367788889999999999999


Q ss_pred             HHHHHHhcCCCCchhhHHHHHHhhhhhHHHHHHhhH
Q 014481          224 ATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLA  259 (423)
Q Consensus       224 ~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~  259 (423)
                      .+.+..+..+++++..+-.+.......|..+|..++
T Consensus       364 ~m~~aPk~v~~~e~e~aG~~m~~fl~~Gl~~G~~~s  399 (406)
T KOG1479|consen  364 IMMYAPKQVKPSEKEAAGNLMVFFLVGGLALGSLLS  399 (406)
T ss_pred             eehhcCCCCChHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence            999999999988888888888888888877776664

>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions

Probab=91.24  E-value=16  Score=35.80  Aligned_cols=75  Identities=13%  Similarity=0.142  Sum_probs=55.2

Q ss_pred             HHHHHHhhcccchHhHHHHHHhcCC-CCchhhHHHHHHhhhhhHHHHHHhhHHHhhhccCchHHHHHHHHHHHHHH
Q 014481          209 SRVLVGIGEGVSPSAATDLIARSIP-LEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWF  283 (423)
Q Consensus       209 ~~~l~G~~~~~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw~~~~~~~~~~~~~~~  283 (423)
                      .-+..|+.........-..+.+.+| ++++...+|-++...++-.++-.++++.+.++.||+....+.-++.++..
T Consensus       288 lvi~Ygi~inLvE~~wK~~lk~~~~~~~~ysafmG~~~~~tGivtii~~~l~~~iir~~GW~~~AlitPiv~lit~  363 (491)
T PF03219_consen  288 LVIAYGISINLVEVVWKSQLKQLYPDPNDYSAFMGKFSSWTGIVTIIMMFLSSNIIRRFGWRTAALITPIVILITG  363 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHH
Confidence            3344566666666666777777776 45678888888888888777777889999999999988877655554443

One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane

>TIGR00806 rfc RFC reduced folate carrier

Probab=90.51  E-value=4.1  Score=39.39  Aligned_cols=97  Identities=15%  Similarity=-0.049  Sum_probs=70.3

Q ss_pred             hhHHHHHHHHHHHhhhhhhhhHhhHhcCchHHHHH--HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcccchHhHHHHH
Q 014481          151 AGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTG--VLIWSLATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLI  228 (423)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~i  228 (423)
                      -|.+-++..+..++.++..|++-.++.+---+.++  .++.+ +.++....+++.|..+++.++.+.......+.+..-+
T Consensus       300 NG~veA~~tllga~~a~~ag~~~~~w~~~~~l~l~v~s~~~~-gll~~m~~t~~Iw~~Y~~yvlf~~~y~flitia~~~i  378 (511)
T TIGR00806       300 NGAVDAASTLLGAITSFIAGFVNIRWARWSKLLIAVVSAIQA-GLVFWMSQSHDIWVLYVTYVLFRGIYQFLVPIATFQI  378 (511)
T ss_pred             CCHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHH-HHhhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46777777888888899999986665432223222  22222 2334446778899999999999999999999999999


Q ss_pred             HhcCCCCchhhHHHHHHhhh
Q 014481          229 ARSIPLEERSRAVSFVFGGL  248 (423)
Q Consensus       229 ~~~~~~~~r~~~~~~~~~~~  248 (423)
                      +.....+..|..+|+.....
T Consensus       379 A~~L~~~~~aLvFGiNtfvA  398 (511)
T TIGR00806       379 ASSLSKELCALVFGINTFVA  398 (511)
T ss_pred             HHHhcccceEEEEecHHHHH
Confidence            99988777788888866543

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>PF06912 DUF1275: Protein of unknown function (DUF1275); InterPro: IPR010699 This family consists of several hypothetical bacterial proteins of around 200 residues in length

Probab=86.35  E-value=20  Score=30.55  Aligned_cols=51  Identities=16%  Similarity=0.222  Sum_probs=28.2

Q ss_pred             hcCCCCchhhHHHHHHhhhhhHHHHHHhhHHHhhhccCchHHHHHHHHHHHH
Q 014481          230 RSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIA  281 (423)
Q Consensus       230 ~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw~~~~~~~~~~~~~  281 (423)
                      ++...+++.+.-.......-++..+|..+++.+.+..+. +..++.+++.++
T Consensus       153 ~~~~~~~~~~~~~~~~~~~i~~f~~Ga~~ga~l~~~~~~-~al~~~~~~l~~  203 (209)
T PF06912_consen  153 RYLRGKDRALRRALRYLLIILSFFIGAILGALLYRRLGF-WALLLPALLLLL  203 (209)
T ss_pred             HHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-HHHHHHHHHHHH
Confidence            333334433344455566666677777777777777674 444444444333

The function of this family is unknown although a few members are thought to be membrane proteins.

>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]

Probab=85.74  E-value=29  Score=32.01  Aligned_cols=153  Identities=18%  Similarity=0.136  Sum_probs=84.6

Q ss_pred             hhhhhHHHhhhhh-CCCcchhhHHHHHHHHHHHhhhhhhhhHhhHhcCchHH----HHHHHHHHHHHHHHHHhh----hH
Q 014481          132 NLSVAIIPMSHRF-GWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVL----QTGVLIWSLATALLPLLA----GF  202 (423)
Q Consensus       132 ~~~~~~~~~~~~~-~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~----~~~~~~~~~~~~~~~~~~----~~  202 (423)
                      .+-..+..+..++ |-+--+.+.+.+.|...+.+|+...-++.|.--.-+.+    ++|++.-.-..++...++    ++
T Consensus        25 vyElal~tLatyLlG~~Ilq~S~Iia~yl~amGlGs~~sry~~dd~~~~~Fv~vElllgligg~Sa~~ly~~FA~~~~~~  104 (508)
T COG4262          25 VYELALGTLATYLLGGGILQTSLIIAGYLAAMGLGSLLSRYVLDDAALARFVDVELLLGLIGGVSAAALYLLFALESAPS  104 (508)
T ss_pred             HHHHHHHHHHHHhcCCceeehHHHHHHHHHHhchhhhhhccccCchHHHHHHHHHHHHHHhccchHHHHHHHHHhccchH
Confidence            3333444454443 56677889999999999999999888887743222111    112111000111111122    34


Q ss_pred             HHHHHHHHHHHHhhcccchHhHHHHHHhcCCCCchhhHHHHHHhhhhhHHHHHHhhHHHhh-hccCchHHHHHHHHHHHH
Q 014481          203 MPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPII-ENLGWESVFYIFGLLGIA  281 (423)
Q Consensus       203 ~~~~~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~-~~~gw~~~~~~~~~~~~~  281 (423)
                      -+.+++.-++.|.-.|.-.|..+.++..-.  .+-....+.....-.+|.+.|.++-.++. ...|.--.-...+++.++
T Consensus       105 ~~Vly~lt~vIG~LVG~EiPL~mrml~~r~--a~~k~~~s~vl~~DYLGal~~gLl~p~lllP~LGl~rta~laG~~Nl~  182 (508)
T COG4262         105 RLVLYALTAVIGVLVGAEIPLLMRMLQRRQ--AKAKDLGSRVLTLDYLGALAGGLLWPFLLLPRLGLVRTAALAGLCNLA  182 (508)
T ss_pred             HHHHHHHHHHHHHHHhcchHHHHHHHHHHH--HHHHhhhhhhhhhHhhhhhhHHHHHHHHHhhhhccHHHHHHHHHHHHH
Confidence            467778888999988999999998887622  11122222233335566666665555433 445544344455555555


Q ss_pred             HHHHH
Q 014481          282 WFSGF  286 (423)
Q Consensus       282 ~~~~~  286 (423)
                      .++..
T Consensus       183 aAvv~  187 (508)
T COG4262         183 AAVVT  187 (508)
T ss_pred             HHHHH
Confidence            44333

>COG1230 CzcD Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]

Probab=85.57  E-value=27  Score=31.44  Aligned_cols=146  Identities=14%  Similarity=0.129  Sum_probs=69.9

Q ss_pred             HHHHHHHHHHHHhhhhhhhhhHHHhhhhhCCCcchhhHHHHHHHHHHHhhhhhhhhHhhH---hcCchHHHHHHHHHHHH
Q 014481          116 IGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKI---FGGRKVLQTGVLIWSLA  192 (423)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr---~G~r~~~~~~~~~~~~~  192 (423)
                      .+.+..++++.-+..+.....+..+.+..|+.....++..+......      ..+-.++   ||.||.=+++..+.++.
T Consensus        27 ~~~L~~~f~~iE~i~g~~s~SlaLLADa~Hml~D~~al~lal~A~~~------a~r~~~~~~TfGy~R~eiLaa~~nav~  100 (296)
T COG1230          27 ALLLNLAFMLIEIIGGLLTGSLALLADALHMLSDALALLLALIAIKL------ARRPATKRFTFGYKRLEILAAFLNALL  100 (296)
T ss_pred             HHHHHHHHHHHHHHHHHHhccHHHHHhHHHHHHHHHHHHHHHHHHHH------hcCCCCCCCCccHhHHHHHHHHHHHHH
Confidence            33444445555555566666677788888876666665555443332      2222222   67777766666655554


Q ss_pred             HHHHHHhh--hHH----------HHHHHHHHHHHhhcccchHhHHHHHHhcCCCCchhhHHHHHHhhhhhHHHHHHhhHH
Q 014481          193 TALLPLLA--GFM----------PGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAP  260 (423)
Q Consensus       193 ~~~~~~~~--~~~----------~~~~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~  260 (423)
                      .+..+.+-  ..+          ...++.-.+.|+..    ....+++-.--..+....--+......-.-+-+|-++++
T Consensus       101 Li~~s~~I~~EAi~R~~~P~~i~~~~ml~va~~GL~v----N~~~a~ll~~~~~~~lN~r~a~LHvl~D~Lgsv~vIia~  176 (296)
T COG1230         101 LIVVSLLILWEAIQRLLAPPPIHYSGMLVVAIIGLVV----NLVSALLLHKGHEENLNMRGAYLHVLGDALGSVGVIIAA  176 (296)
T ss_pred             HHHHHHHHHHHHHHHhcCCCCCCccchHHHHHHHHHH----HHHHHHHhhCCCcccchHHHHHHHHHHHHHHHHHHHHHH
Confidence            43332211  000          01111112222221    111122211111123444444555544445556667777


Q ss_pred             HhhhccCchHH
Q 014481          261 PIIENLGWESV  271 (423)
Q Consensus       261 ~l~~~~gw~~~  271 (423)
                      .+...+||.|.
T Consensus       177 i~i~~~~w~~~  187 (296)
T COG1230         177 IVIRFTGWSWL  187 (296)
T ss_pred             HHHHHhCCCcc
Confidence            77777788874

>PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS)

Probab=84.43  E-value=16  Score=32.13  Aligned_cols=72  Identities=17%  Similarity=0.193  Sum_probs=38.1

Q ss_pred             hHHHHHHHHHHHhhhhhhhhHhhHh-cCchHHHH----HHHHHHHHHHHHHHhh-h---HHHHHHHHHHHHHhhcccchH
Q 014481          152 GLVQSSFFWGYALSQLPGGWLAKIF-GGRKVLQT----GVLIWSLATALLPLLA-G---FMPGLVLSRVLVGIGEGVSPS  222 (423)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~g~l~dr~-G~r~~~~~----~~~~~~~~~~~~~~~~-~---~~~~~~~~~~l~G~~~~~~~~  222 (423)
                      ....-++..+..+|....|.+...- .||+.+..    +.+++.+..++..... +   ....+++.-++.|++.=+.++
T Consensus       144 ~~~~I~fv~g~~~G~~~ig~~nkt~~kRk~fi~~~~~~gi~~~~l~~~~~~~~g~~~~~~~~~f~I~~Fl~G~f~WgiQ~  223 (267)
T PF07672_consen  144 PIFQILFVAGYFLGPFTIGLWNKTNYKRKPFIHFIISLGIVFFVLSIVVVYFVGPGNAAGFAFFYIFGFLAGFFLWGIQG  223 (267)
T ss_pred             HHHHHHHHHHHhhhceeeccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhhhH
Confidence            3444567777778888888887754 44444332    2233333222211111 1   245577777788876544444


Q ss_pred             h
Q 014481          223 A  223 (423)
Q Consensus       223 ~  223 (423)
                      +
T Consensus       224 V  224 (267)
T PF07672_consen  224 V  224 (267)
T ss_pred             H
Confidence            3

>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism]

Probab=83.97  E-value=1.9  Score=40.04  Aligned_cols=63  Identities=8%  Similarity=-0.124  Sum_probs=51.0

Q ss_pred             HHHHHHhhcccchHhHHHHHHhcCCCCchhhHHHHHHhhhhhHHHHHHhhHHHhhhccCchHH
Q 014481          209 SRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESV  271 (423)
Q Consensus       209 ~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw~~~  271 (423)
                      ...+.+...-..+...++..+++.+|.--|+.|.+.++..++|+---..+..++.|..+|+-+
T Consensus       375 ~y~~~~~~~ts~fv~~maf~aqisdp~iggTymTlLNTLsnLGg~wp~tv~l~l~D~ltv~~C  437 (510)
T KOG3574|consen  375 SYAFHQVFVTSMFVSGMAFHAQISDPAIGGTYMTLLNTLSNLGGNWPGTVALWLADGLTVKQC  437 (510)
T ss_pred             HHHHhhhHHHHHHHHHHHHHhhcCCcccCccHHHHHHHHHHhcCCcHHHHHHHhcccCceeec
Confidence            345555555666777889999999999999999999999999988888888888887776643

>KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism]

Probab=81.14  E-value=23  Score=32.77  Aligned_cols=130  Identities=17%  Similarity=0.116  Sum_probs=82.2

Q ss_pred             hHHHHHHHHHHHhhhhhhhhHhhHhcCchHHH--HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcccchHhHHHHHH
Q 014481          152 GLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQ--TGVLIWSLATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIA  229 (423)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~i~  229 (423)
                      |..-++..+..+++.+..|.+--++.|..-++  ++.+.. .+.+....-+++.|...++.++...-.....+.+...++
T Consensus       274 G~veAv~tlLGa~~~~~~g~l~i~w~r~g~~ll~~~s~~~-agllf~m~~t~~Iw~~Ya~yvlfr~~y~l~itiA~~~iA  352 (433)
T KOG3810|consen  274 GAVEAVSTLLGAIAALAAGYLNINWNRWGDLLLAVGSAVQ-AGLLFIMAQTQHIWVCYAGYVLFRVIYQLTITIATFQIA  352 (433)
T ss_pred             CHHHHHHHHHHHHHHHHHHheeeccchhhHHHHHHHHHHh-hhhhhhhhcccceehhhhhHHHHHhhHhhhhhHHHHHHH
Confidence            56666777788888999999977666653333  333332 233333355677888888888888777777888888888


Q ss_pred             hcCCCCchhhHHHHHHhhhhhHHHHHHhhHHHhhhccC-----------chHHHHHHHHHHHHHHHH
Q 014481          230 RSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLG-----------WESVFYIFGLLGIAWFSG  285 (423)
Q Consensus       230 ~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g-----------w~~~~~~~~~~~~~~~~~  285 (423)
                      .....+.-|..+|+....   +.++-.++.-.+.|..|           +..-|.+.+.+.++....
T Consensus       353 ~nL~~e~~gLvFGiNTFv---Al~lQsilT~iVvd~~g~~L~ir~Q~~~Y~~Yf~v~~~i~~~~~~~  416 (433)
T KOG3810|consen  353 RNLSSELFGLVFGINTFV---ALILQSILTLIVVDDRGLGLDIRTQFVVYSSYFIVLGVIFLIGFGI  416 (433)
T ss_pred             HhhhhhhheeeeehHHHH---HHHHHHhheEEEEcccccCCCcceeEEEEeehHHHHHHHHHHHHHH
Confidence            888877888888876543   23333333333444222           234566667666665443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	423
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	2e-49
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	3e-10
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	1e-09
2cfq_A	417	Lactose permease; transport, transport mechanism,	7e-06
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	1e-05

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 Length = 451

 Score =  172 bits (439), Expect = 2e-49
 Identities = 49/305 (16%), Positives = 102/305 (33%), Gaps = 8/305 (2%)

Query: 112 RYKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGW 171
           R+++       +    + + N ++A+ P     G++    G   S     Y  S+   G 
Sbjct: 26  RWQIFLGIFFGYAAYYLVRKNFALAM-PYLVEQGFSRGDLGFALSGISIAYGFSKFIMGS 84

Query: 172 LAKIFGGRKVLQTGVLIWSLATALLPLLAGF---MPGLVLSRVLVGIGEGVSPSAATDLI 228
           ++     R  L  G+++ +     +  +      +  + +   L G  +G+        +
Sbjct: 85  VSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTM 144

Query: 229 ARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENL-GWESVFYIFGLLGIAW-FSGF 286
                 +ER   VS      + G     LL    +     W +  Y+     I      F
Sbjct: 145 VHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAF 204

Query: 287 KILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHF 346
            ++++   S G                  + +E+  + K +  + +  +K +W +  A+ 
Sbjct: 205 AMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQEL--TAKQIFMQYVLPNKLLWYIAIANV 262

Query: 347 CGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVET 406
                 Y  L W PTY  E     L +++W   L   A +  T +    +D +       
Sbjct: 263 FVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGA 322

Query: 407 TMVRK 411
           T V  
Sbjct: 323 TGVFF 327

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} Length = 375

 Score = 60.3 bits (147), Expect = 3e-10
 Identities = 46/267 (17%), Positives = 87/267 (32%), Gaps = 43/267 (16%)

Query: 140 MSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLL 199
           M+            V  ++   Y +SQL  G ++   G R V+  G+ I+ LAT +  + 
Sbjct: 26  MARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVA-VT 84

Query: 200 AGFMPGLVLSRVLVGIGEGVSPSAATDLIARSI-----PLEERSRAVSFVFGGLSFGSVA 254
              +  L+ +  + G+G     +    ++AR++        +   A S +  G+      
Sbjct: 85  TSSLTVLIAASAMQGMG-----TGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSP-- 137

Query: 255 GLLLAPPI----IENLGWESVFYIFGLLGIA-WFSGFKILQEGETSNGATLAPRSNYINM 309
             LLAP I         W + +    +L     FS  + + E       T    +    +
Sbjct: 138 --LLAPLIGGLLDTMWNWRACYLFLLVLCAGVTFSMARWMPE-------TRPVDAPRTRL 188

Query: 310 KKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSL 369
             S                +K +F +      +     G  G     +         L L
Sbjct: 189 LTS----------------YKTLFGNSGFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGL 232

Query: 370 NLTEAAWVSILPPLASVLVTSIAAQFA 396
           +    + + ILP  A+      A +  
Sbjct: 233 SSMTVSILFILPIPAAFFGAWFAGRPN 259

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* Length = 438

 Score = 59.2 bits (143), Expect = 1e-09
 Identities = 44/260 (16%), Positives = 87/260 (33%), Gaps = 13/260 (5%)

Query: 133 LSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLA 192
             + +      F   +  AGL+QS+F++GY +  +P G L K    +  + TG+ +++L 
Sbjct: 45  NDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALG 104

Query: 193 TALLPLLAGFM---PGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLS 249
            A L   A  +      ++   ++  G G   +AA   +    P       ++      S
Sbjct: 105 -AALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNS 163

Query: 250 FGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFSGFKILQEGETSN--------GATLA 301
           FG++  ++    +I +        +   +     S +K                    +A
Sbjct: 164 FGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVA 223

Query: 302 PRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLSWLPT 361
                       S +  +  +         + R +     + A FC       C S+L  
Sbjct: 224 LLIMLTKFPALQSDNHSDAKQGSFSASLSRLARIRHWRWAVLAQFCYVGAQTACWSYLIR 283

Query: 362 YFSEEL-SLNLTEAAWVSIL 380
           Y  EE+  +    AA     
Sbjct: 284 YAVEEIPGMTAGFAANYLTG 303

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* Length = 417

 Score = 46.8 bits (111), Expect = 7e-06
 Identities = 15/113 (13%), Positives = 34/113 (30%), Gaps = 2/113 (1%)

Query: 170 GWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIA 229
             +    GG+  L     I S+              +V+ + L               I 
Sbjct: 280 PLIINRIGGKNALLLAGTIMSVRIIGSSFATSA-LEVVILKTLHMFEVPFLLVGCFKYIT 338

Query: 230 RSIPLEERSRAVSFVFG-GLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIA 281
               +   +      F        +   +LA  + E++G++  + + GL+ + 
Sbjct: 339 SQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALG 391

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} Length = 491

 Score = 45.9 bits (109), Expect = 1e-05
 Identities = 30/150 (20%), Positives = 54/150 (36%), Gaps = 4/150 (2%)

Query: 144 FGWNSSVAGLVQSSFFWGYALSQLPGGWLA-KIFGGRKVLQTGVLIWSLATALLPLLAGF 202
                + A  + + +     LS   GG++A +I G R  +  G ++  L   +L L  G 
Sbjct: 49  LHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFG- 107

Query: 203 MPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSR--AVSFVFGGLSFGSVAGLLLAP 260
              L  S +L+ IG G      + L+       +R R    S    G++ G+    L+  
Sbjct: 108 ASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVG 167

Query: 261 PIIENLGWESVFYIFGLLGIAWFSGFKILQ 290
              E  G+   F +  +        +    
Sbjct: 168 AAQEAAGYHVAFSLAAIGMFIGLLVYYFGG 197

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	423
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	100.0
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.98
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	99.96
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.94
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	99.94
2cfq_A	417	Lactose permease; transport, transport mechanism,	99.89
2xut_A	524	Proton/peptide symporter family protein; transport	99.85
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.66
2cfq_A	417	Lactose permease; transport, transport mechanism,	99.53
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	99.51
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.37
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	99.35
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	99.15
2xut_A	524	Proton/peptide symporter family protein; transport	98.88

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=100.00  E-value=7.2e-31  Score=251.47  Aligned_cols=275  Identities=15%  Similarity=0.176  Sum_probs=232.0

Q ss_pred             hHHHHHHHHHHHHHHHhhhhhhhhhHHHhhhhhCCCcchhhHHHHHHHHHHHhhhhhhhhHhhHhcCchHHHHHHHHHHH
Q 014481          112 RYKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSL  191 (423)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~  191 (423)
                      ++..+..+++..+...+......+.+|.+.+++|++..+.|++.+++.++..++.+++|+++||+|||++++++.++.++
T Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~  103 (438)
T 3o7q_A           24 YIIPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYAL  103 (438)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHH
Confidence            45666677777888888888999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHH--HhhhHHHHHHHHHHHHHhhcccchHhHHHHHHhcCCCCchhhHHHHHHhhhhhHHHHHHhhHHHhh-hccC-
Q 014481          192 ATALLP--LLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPII-ENLG-  267 (423)
Q Consensus       192 ~~~~~~--~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~-~~~g-  267 (423)
                      +.+++.  ...++++.++++|++.|++.+...+...++++|++|+++|++++++.+.+..+|.++||.+++.+. +..+ 
T Consensus       104 ~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~  183 (438)
T 3o7q_A          104 GAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPH  183 (438)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCC
T ss_pred             HHHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence            887662  345778999999999999999999999999999999999999999999999999999999999998 5544 


Q ss_pred             ------------------------chHHHHHHHHHHHHHHHHHHhhccCCcCcCCCCCcchhhhhhhhhhhhhHHhhccc
Q 014481          268 ------------------------WESVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGES  323 (423)
Q Consensus       268 ------------------------w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (423)
                                              ||+.|++.+++.++..+..++.+.++.++..+.++++.                  
T Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~------------------  245 (438)
T 3o7q_A          184 QSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDNHSDAKQG------------------  245 (438)
T ss_dssp             CCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTTCCCCSSTT------------------
T ss_pred             ccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCccccccccccccc------------------
Confidence                                    99999888877766655554443322221111110000                  


Q ss_pred             cCCCcHHHhhhcHHHHHHHHHHHHHHHHHHHHHhhhhHH-HHHhhCCChhhHHHHHHHHHHHHHHHHHHHHHHhHHhhhc
Q 014481          324 LKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLSWLPTY-FSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIAT  402 (423)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~r  402 (423)
                      ....++++++++|.++...+..++..........++|.| +++.+|++..+++.+..+..++.+++.++.|++.||+++|
T Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~  325 (438)
T 3o7q_A          246 SFSASLSRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPH  325 (438)
T ss_dssp             SHHHHHHHHTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHH
T ss_pred             chhhhHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcch
Confidence            001135788999999999999999988899999999999 8888899999999999999999999999999999999988


Q ss_pred             CC
Q 014481          403 GV  404 (423)
Q Consensus       403 ~~  404 (423)
                      +.
T Consensus       326 ~~  327 (438)
T 3o7q_A          326 KV  327 (438)
T ss_dssp             HH
T ss_pred             HH
Confidence            53

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.98  E-value=8.8e-32  Score=258.74  Aligned_cols=288  Identities=16%  Similarity=0.199  Sum_probs=235.9

Q ss_pred             hHHHHHHHHHHHHHHHhhhhhhhhhHHHhhhhhCCCcchhhHHHHHHHHHHHhhhhhhhhHhhHhcCchHHHHHHHHHHH
Q 014481          112 RYKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSL  191 (423)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~  191 (423)
                      +++.+..+++..+...++...+.+.+|.+.+++ .+..+.|++.+++.++..++++++|+++||+|||++++++.++.++
T Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~  104 (451)
T 1pw4_A           26 RWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAA  104 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTSHHHHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHHH
Confidence            466777888888888899999999999999999 9999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHh----hhHHHHHHHHHHHHHhhcccchHhHHHHHHhcCCCCchhhHHHHHHhhhhhHHHHHHhhHHHhhhccC
Q 014481          192 ATALLPLL----AGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLG  267 (423)
Q Consensus       192 ~~~~~~~~----~~~~~~~~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g  267 (423)
                      +.+++ .+    +++++.++++|++.|++.+...+...+++.|++|+++|++++++.+.+..+|.++||.+++.+.+..|
T Consensus       105 ~~~~~-~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g  183 (451)
T 1pw4_A          105 VMLFM-GFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFN  183 (451)
T ss_dssp             HHHHH-HHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTC
T ss_pred             HHHHH-HhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            98877 45    67788999999999999999999999999999999999999999999999999999999999888888


Q ss_pred             -chHHHHHHHHHHHHHHHH-HHhhccCCcCcCCCCCcchhhhhhhhhhhhhHHhhccccCCCcHHHhhhcHHHHHHHHHH
Q 014481          268 -WESVFYIFGLLGIAWFSG-FKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAH  345 (423)
Q Consensus       268 -w~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  345 (423)
                       ||+.|++.+++.++..+. .++++|+++.......++.+...  +.......+.....++..+++++++|.++...+..
T Consensus       184 ~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (451)
T 1pw4_A          184 DWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDY--PDDYNEKAEQELTAKQIFMQYVLPNKLLWYIAIAN  261 (451)
T ss_dssp             CSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTCCC---------------CCTHHHHHHTSSCHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCChhhhcccc--cccchhhhhcccccccchHHHHHcCHHHHHHHHHH
Confidence             999999999888765444 45556554432211111100000  00000000001111111246788999999999999


Q ss_pred             HHHHHHHHHHHhhhhHHHHHhhCCChhhHHHHHHHHHHHHHHHHHHHHHHhHHh--hhcC
Q 014481          346 FCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNL--IATG  403 (423)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~--~~r~  403 (423)
                      ++..........++|.|+++.+|+++.+++++.++..++.+++.++.|++.||+  ++|+
T Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~  321 (451)
T 1pw4_A          262 VFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRG  321 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCch
Confidence            999999999999999999988899999999999999999999999999999999  7764

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=99.96  E-value=2.7e-29  Score=235.66  Aligned_cols=261  Identities=17%  Similarity=0.177  Sum_probs=228.2

Q ss_pred             HHHHHHHHHHHhhhhhhhhhHHHhhhhhCCCcchhhHHHHHHHHHHHhhhhhhhhHhhHhcCchHHHHHHHHHHHHHHHH
Q 014481          117 GTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALL  196 (423)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~  196 (423)
                      ..+++..++..+......+.+|.+.+++|.+..+.+++.+++.++..++++++|+++||+|||++++++.++.+++.++.
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~   82 (375)
T 2gfp_A            3 LMLVLLVAVGQMAQTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVA   82 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHH
Confidence            45666777788888899999999999999999999999999999999999999999999999999999999999988777


Q ss_pred             HHhhhHHHHHHHHHHHHHhhcccchHhHHHHHHhcCCCCchhhHHHHHHhhhhhHHHHHHhhHHHhhhccCchHHHHHHH
Q 014481          197 PLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFG  276 (423)
Q Consensus       197 ~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw~~~~~~~~  276 (423)
                       ...++++.+++.|++.|++.+...+...+++.|++|+++|++++++.+.+..+|..++|.+++.+.+..|||+.|++.+
T Consensus        83 -~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~  161 (375)
T 2gfp_A           83 -VTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLL  161 (375)
T ss_dssp             -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHH
T ss_pred             -HHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHH
Confidence             4667889999999999999999999999999999999999999999999999999999999999999889999999988


Q ss_pred             HHHHHHHH-HHHhhccCCcCcCCCCCcchhhhhhhhhhhhhHHhhccccCCCcHHHhhhcHHHHHHHHHHHHHHHHHHHH
Q 014481          277 LLGIAWFS-GFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTC  355 (423)
Q Consensus       277 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  355 (423)
                      ++.++..+ ..+.+||+++.++++                       +....++++++++|.++...+..++........
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  218 (375)
T 2gfp_A          162 VLCAGVTFSMARWMPETRPVDAPR-----------------------TRLLTSYKTLFGNSGFNCYLLMLIGGLAGIAAF  218 (375)
T ss_dssp             HHHHHHHCCCCCSSCCCSTTTCCC-----------------------CCTTTCSTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCcccCCCCccc-----------------------ccHHHHHHHHhcCcchHHHHHHHHHHHHHHHHH
Confidence            88776655 344455443321110                       001123568889999999999999999999999


Q ss_pred             HhhhhHHHHHhhCCChhhHHHHHHHHHHHHHHHHHHHHHHhHHhhh
Q 014481          356 LSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIA  401 (423)
Q Consensus       356 ~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~  401 (423)
                      ..++|.|+++.+|+++.+++.+.....++.+++.++.+++.||+++
T Consensus       219 ~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~  264 (375)
T 2gfp_A          219 EACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFST  264 (375)
T ss_dssp             HHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHH
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999998889999999999999999999999999999999986

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.94  E-value=4.4e-26  Score=221.54  Aligned_cols=286  Identities=16%  Similarity=0.092  Sum_probs=201.6

Q ss_pred             HHHHHHHHHHhhhhhhhhhHHH-hhhh-----hCCCcchhhHHHHHHHHHHHhhhhhhhhHhhH-hcCchHHHHHHHHHH
Q 014481          118 TTSLAFVICNMDKVNLSVAIIP-MSHR-----FGWNSSVAGLVQSSFFWGYALSQLPGGWLAKI-FGGRKVLQTGVLIWS  190 (423)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~-~~~~-----~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~G~r~~~~~~~~~~~  190 (423)
                      .+.+..+...+........++. +.++     +|.+..+.+++.+++.++..++++++|+++|| +|||++++++.++.+
T Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~   96 (491)
T 4aps_A           17 TLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIM   96 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHH
Confidence            3444444444444444444333 4454     99999999999999999999999999999999 899999999999999


Q ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHhhcccchHhHHHHHHhcCCCCc--hhhHHHHHHhhhhhHHHHHHhhHHHhhhccCc
Q 014481          191 LATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEE--RSRAVSFVFGGLSFGSVAGLLLAPPIIENLGW  268 (423)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~--r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw  268 (423)
                      ++.+++ ..+++++.++++|++.|++.+...+...++++|++|+++  |+.++++++.+.++|..+||.+++.+.+..||
T Consensus        97 ~~~~~~-~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~  175 (491)
T 4aps_A           97 LGHIVL-ALPFGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGY  175 (491)
T ss_dssp             HHHHHH-HSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCH
T ss_pred             HHHHHH-HHhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhH
Confidence            988777 467777899999999999999999999999999999988  77888889999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHhhcc-CCcCcCCCCCcchhhhhhhhhhhh---------------hHH--------------
Q 014481          269 ESVFYIFGLLGIAWFSGFKILQE-GETSNGATLAPRSNYINMKKSLSA---------------SLE--------------  318 (423)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~--------------  318 (423)
                      |+.|++.++..++.++..++..+ ..++............+..+..+.               ...              
T Consensus       176 ~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (491)
T 4aps_A          176 HVAFSLAAIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNSLPAYINLLTI  255 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTCCSCCSCCSCCCSHHHHHHHHHHCCCCCHHHHHHHHHHHHHSSCCTTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCcccccccccCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHhccCcccccchhhhhH
Confidence            99999988777666555444322 222111111110000000000000               000              


Q ss_pred             ----------hhccccCCCcHHHhhhcHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhhCCChhhHHHHHHHHHHHHHHH
Q 014481          319 ----------EMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLV  388 (423)
Q Consensus       319 ----------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~  388 (423)
                                ....+.......+..+....+...+..++....+.....+++.|..+..+.+....+.+.....++.+++
T Consensus       256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  335 (491)
T 4aps_A          256 VAIAIPVFYFAWMISSVKVTSTEHLRVVSYIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLY  335 (491)
T ss_dssp             HHHHHHHHHHHHHC------------CTTHHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHH
Confidence                      0000000000011111222444555556666666777788899998878888778888889999999999


Q ss_pred             HHHHHHHhHHhhhcCC
Q 014481          389 TSIAAQFADNLIATGV  404 (423)
Q Consensus       389 ~~~~g~l~dr~~~r~~  404 (423)
                      .++.+++.||++||+.
T Consensus       336 ~~~~~~l~~r~~~r~~  351 (491)
T 4aps_A          336 TPFFAWLWTAWKKNQP  351 (491)
T ss_dssp             HHHHHHHHHHTTTC--
T ss_pred             HHHHHHHHHHHhccCC
Confidence            9999999999998854

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=99.94  E-value=1.6e-26  Score=224.56  Aligned_cols=290  Identities=18%  Similarity=0.218  Sum_probs=212.0

Q ss_pred             HHHHHHHHHHHHHHhhhhhhhhhHHHhhhhhCC--------CcchhhHHHHHHHHHHHhhhhhhhhHhhHhcCchHHHHH
Q 014481          114 KLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGW--------NSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTG  185 (423)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~  185 (423)
                      .+.+...++.++.+++...++..+|.+.++++.        +..+.|++.+++.+|..++++++|+++||+|||++++++
T Consensus        12 ~i~~~a~lg~~~~Gyd~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~l~~~   91 (491)
T 4gc0_A           12 SITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIA   91 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHGGGGTHHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence            334445566778888888899899998887743        345678999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHH-----------------hhhHHHHHHHHHHHHHhhcccchHhHHHHHHhcCCCCchhhHHHHHHhhh
Q 014481          186 VLIWSLATALLPL-----------------LAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGL  248 (423)
Q Consensus       186 ~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~  248 (423)
                      .+++.++.+++++                 .+++++.++++|+++|++.|+..+....+++|+.|+++|++..++.+.+.
T Consensus        92 ~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~  171 (491)
T 4gc0_A           92 AVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAI  171 (491)
T ss_dssp             HHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhh
Confidence            9999999887753                 47788999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHhhHHHhhhc--------cCchHHHHHHHHHHHHHHHHHHhhccCCcCcCCCCCcchhhhhhhhhhh------
Q 014481          249 SFGSVAGLLLAPPIIEN--------LGWESVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLS------  314 (423)
Q Consensus       249 ~~g~~~g~~~~~~l~~~--------~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------  314 (423)
                      .+|.++++.++..+...        .+||+.+.+..+..++.++..+++||+++....+.+.++.....++...      
T Consensus       172 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peSp~~L~~~~~~~~a~~~l~~~~~~~~~~~  251 (491)
T 4gc0_A          172 IFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLLYTVPESPRWLMSRGKQEQAEGILRKIMGNTLATQ  251 (491)
T ss_dssp             HHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHHHGGGSCCCHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhhhhhhcCCCChHHHHHcCchhHHHHhHHHhcCCchhHH
Confidence            99999999888776543        3477777777777777777788888887654333332222111111000      


Q ss_pred             ---hhHHhhccccCCCcHHHhhhcHHHHHH-HHHHHHHHHHHHHHHhhhhHHHHHhhCCChhhHHHHHHHHHHHHHHHHH
Q 014481          315 ---ASLEEMGESLKDVPWKAIFRSKAVWAM-IYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTS  390 (423)
Q Consensus       315 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~  390 (423)
                         +..+...+..+.......++.+..... ....+....+.+.+..+.+.+.+. .+.+.........+.++..+++.+
T Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  330 (491)
T 4gc0_A          252 AVQEIKHSLDHGRKTGGRLLMFGVGVIVIGVMLSIFQQFVGINVVLYYAPEVFKT-LGASTDIALLQTIIVGVINLTFTV  330 (491)
T ss_dssp             HHHHHHHHHHHHHHHTTHHHHSCCTHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-SSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhhhhhHHHHhcccHHHHHHHHHHHHHHhhhhHHHhcchHHHHh-cCCCccchhhHHHHHHHHHHHHHH
Confidence               000000111111112233333444333 333344444455566666666654 688888888888888999999999


Q ss_pred             HHHHHhHHhhhcCC
Q 014481          391 IAAQFADNLIATGV  404 (423)
Q Consensus       391 ~~g~l~dr~~~r~~  404 (423)
                      +++++.||+|||+.
T Consensus       331 ~~~~l~dr~Grr~~  344 (491)
T 4gc0_A          331 LAIMTVDKFGRKPL  344 (491)
T ss_dssp             HHHHHHHHHCSHHH
T ss_pred             HHHHHHHhhcCcch
Confidence            99999999999854

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=99.89  E-value=7.6e-23  Score=194.44  Aligned_cols=271  Identities=11%  Similarity=0.019  Sum_probs=178.5

Q ss_pred             HHHHHHHHHhhhhhhhhhHHH-hhhhhCCCcchhhHHHHHHHHHHHhhhhhhhhHhhHhcCchHHHHHHHHHHHHHHHHH
Q 014481          119 TSLAFVICNMDKVNLSVAIIP-MSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLP  197 (423)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~  197 (423)
                      +....++.........+.+|. +.+++|++..+.|++.+++.++..++++++|+++||+|||++++++.+++++......
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~   91 (417)
T 2cfq_A           12 FGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFF   91 (417)
T ss_dssp             HHHHHHHHHHHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence            333444445555566677776 5567999999999999999999999999999999999999999998877654321110


Q ss_pred             --HhhhHH-HHHHHHHHHHHhhcccchHhHHHHHHhcCCC--CchhhHHHHHHhhhhhHHHHHHhhHHHhhhccCchHHH
Q 014481          198 --LLAGFM-PGLVLSRVLVGIGEGVSPSAATDLIARSIPL--EERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVF  272 (423)
Q Consensus       198 --~~~~~~-~~~~~~~~l~G~~~~~~~~~~~~~i~~~~~~--~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw~~~~  272 (423)
                        ...... ..++..+++.|++.+...+.....+.++.++  ++++..+|....+..+|..++|.+++++.+ .+|++.|
T Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~-~~~~~~f  170 (417)
T 2cfq_A           92 IFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFT-INNQFVF  170 (417)
T ss_dssp             HHTHHHHHHTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHH-HCSHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHH-hchhHHH
Confidence              111111 1233455666665554444444444444432  456777888889999999999999999987 4899999


Q ss_pred             HHHHHHHHHHHHHHHhhccCCcCcCCCCCcchhhhhhhhhhhhhHHhhccccCCCcHHHhhhcHHHHHHHHHHHHHHHHH
Q 014481          273 YIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGH  352 (423)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  352 (423)
                      ++.++..++..+..++.++++++..++.++++.              ..++.....+++++++|.++...+..++....+
T Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (417)
T 2cfq_A          171 WLGSGCALILAVLLFFAKTDAPSSATVANAVGA--------------NHSAFSLKLALELFRQPKLWFLSLYVIGVSCTY  236 (417)
T ss_dssp             TTTTTTTTTHHHHSCSSCCCCSCSSCSSSSSSS--------------CCCCCCHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCccccccccccccccc--------------ccccccHHHHHHHhcCCchhhHHHHHHHHHHHH
Confidence            887776554444444444332211100000000              000001112457888999988777666655566


Q ss_pred             HHHHhhhhHHHHHhhCC---ChhhHHHHHHHHHHHHHHHHHHHHHHhHHhhhcCC
Q 014481          353 YTCLSWLPTYFSEELSL---NLTEAAWVSILPPLASVLVTSIAAQFADNLIATGV  404 (423)
Q Consensus       353 ~~~~~~~~~~~~~~~g~---s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~r~~  404 (423)
                      .....++|.|+.+.++.   +....+++.++..++.+++.++.+++.||+++|+.
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~  291 (417)
T 2cfq_A          237 DVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNA  291 (417)
T ss_dssp             HHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHH
T ss_pred             HHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHH
Confidence            66667789888765542   23445777778888889999999999999998854

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=99.85  E-value=3.6e-21  Score=188.43  Aligned_cols=169  Identities=21%  Similarity=0.275  Sum_probs=142.9

Q ss_pred             HHHHHHHHHhhhhhhhhhHHH-hhhhhC------CCcchhhHHHHHHHHHHHhhhhhhhhHhhHh-cCchHHHHHHHHHH
Q 014481          119 TSLAFVICNMDKVNLSVAIIP-MSHRFG------WNSSVAGLVQSSFFWGYALSQLPGGWLAKIF-GGRKVLQTGVLIWS  190 (423)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~------~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-G~r~~~~~~~~~~~  190 (423)
                      +.+..++..+..+...+.++. +.+++|      .+..+.+++.+++.++..++.+++|+++||+ |||+++.++.++.+
T Consensus        17 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~   96 (524)
T 2xut_A           17 IIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYC   96 (524)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence            334444444455445555554 677889      9999999999999999999999999999999 99999999999998


Q ss_pred             HHHHHHHHhhh-HHHHHHHHHHHHHhhcccchHhHHHHHHhcCCCCchhhHHHH---HHhhhhhHHHHHHhhHHHhhhcc
Q 014481          191 LATALLPLLAG-FMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSF---VFGGLSFGSVAGLLLAPPIIENL  266 (423)
Q Consensus       191 ~~~~~~~~~~~-~~~~~~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~---~~~~~~~g~~~g~~~~~~l~~~~  266 (423)
                      ++.+++. ..+ +++.++++|++.|++.+...+...+++.|++|+++|+++.+.   ++.+.++|..+||.+++.+.+..
T Consensus        97 ~~~~~~~-~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~  175 (524)
T 2xut_A           97 VGHAFLA-IFEHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNF  175 (524)
T ss_dssp             HHHHHHH-HTSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTS
T ss_pred             HHHHHHH-HhcccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            8887774 555 778999999999999999999999999999999999876666   99999999999999999999988


Q ss_pred             CchHHHHHHHHHHHHHHHHHHh
Q 014481          267 GWESVFYIFGLLGIAWFSGFKI  288 (423)
Q Consensus       267 gw~~~~~~~~~~~~~~~~~~~~  288 (423)
                      ||++.|++.+++.++.++..++
T Consensus       176 g~~~~f~~~~~~~~~~~~~~~~  197 (524)
T 2xut_A          176 GAAVAFGIPGVLMFVATVFFWL  197 (524)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHS
T ss_pred             cHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999988887666555443

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.66  E-value=7.8e-16  Score=147.38  Aligned_cols=175  Identities=13%  Similarity=0.040  Sum_probs=143.7

Q ss_pred             HHHHHHHHHHHHhhhhhhhhhHHHhhhh-hCCCcchhhHHHHHHHHHHHhhhhhhhhHhhHh--cCchHHHHHHHHHH-H
Q 014481          116 IGTTSLAFVICNMDKVNLSVAIIPMSHR-FGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIF--GGRKVLQTGVLIWS-L  191 (423)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~--G~r~~~~~~~~~~~-~  191 (423)
                      +..+.+..++............|.+.++ +|.+..+.+++.+...++..++.++.|++.||+  |+|+.+.++.++.. +
T Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~  333 (451)
T 1pw4_A          254 LWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTI  333 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHH
Confidence            3344455555555666666777776655 899999999999999999999999999999999  99999988877766 5


Q ss_pred             HHHHHHHhh-hHHHHHHHHHHHHHhhcccchHhHHHHHHhcCCCCchhhHHHHHHhhhhh-HHHHHHhhHHHhhhccCch
Q 014481          192 ATALLPLLA-GFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSF-GSVAGLLLAPPIIENLGWE  269 (423)
Q Consensus       192 ~~~~~~~~~-~~~~~~~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-g~~~g~~~~~~l~~~~gw~  269 (423)
                      +.+++.... .+.+.++++.++.|++.+...+....++.+.+|+++|++++|+.+....+ |..++|.+.+.+.+..||+
T Consensus       334 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~  413 (451)
T 1pw4_A          334 ATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWD  413 (451)
T ss_dssp             HHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSH
T ss_pred             HHHHHHHhcccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcH
Confidence            554443222 35677778888999998888888899999999999999999999999999 9999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhc
Q 014481          270 SVFYIFGLLGIAWFSGFKILQ  290 (423)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~  290 (423)
                      ..|++.+++.++..+..+++.
T Consensus       414 ~~~~~~~~~~~~~~~~~~~~~  434 (451)
T 1pw4_A          414 GGFMVMIGGSILAVILLIVVM  434 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            999998888877766655554

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=99.53  E-value=7e-14  Score=132.55  Aligned_cols=141  Identities=13%  Similarity=0.065  Sum_probs=115.8

Q ss_pred             cchhhHHHHHHHHHHHhhhhhhhhHhhHhcCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcccchHhHHHH
Q 014481          148 SSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDL  227 (423)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~  227 (423)
                      ....++..++..++..++.++.|+++||+|||+++.++.++.++..++.. ..++.+.+++..++.+++.+...+....+
T Consensus       258 ~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  336 (417)
T 2cfq_A          258 TRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSS-FATSALEVVILKTLHMFEVPFLLVGCFKY  336 (417)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHT-TCCSHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHH-HhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45567888888888899999999999999999999988888777665553 34455667777777787776666777889


Q ss_pred             HHhcCCCCchhhHHHH-HHhhhhhHHHHHHhhHHHhhhccCchHHHHHHHHHHHHHHHHHHhh
Q 014481          228 IARSIPLEERSRAVSF-VFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFSGFKIL  289 (423)
Q Consensus       228 i~~~~~~~~r~~~~~~-~~~~~~~g~~~g~~~~~~l~~~~gw~~~~~~~~~~~~~~~~~~~~~  289 (423)
                      ++|.+|++.|+++.++ ++....+|..++|.++|.+.+..|++..|.+.+++.++..+..++.
T Consensus       337 ~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~  399 (417)
T 2cfq_A          337 ITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFT  399 (417)
T ss_dssp             HHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred             HHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhh
Confidence            9999999999999999 5888899999999999999998889999998888877766554443

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=99.51  E-value=1.7e-13  Score=130.63  Aligned_cols=159  Identities=16%  Similarity=0.105  Sum_probs=125.2

Q ss_pred             HHHHHHhhhhhhhhhHHHh-hhh-hCCCcchhhHHHHHHHHHHHhhhhhhhhHhhHhcCchHHHHHHHHHHHHHHHHHHh
Q 014481          122 AFVICNMDKVNLSVAIIPM-SHR-FGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLL  199 (423)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~-~~~-~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~  199 (423)
                      ..++............|.+ .++ +|.+..+.+++.+...++..++.++.|+++||+|||+.+.++.++.+++.++.. .
T Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~-~  344 (438)
T 3o7q_A          266 AQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISA-F  344 (438)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH-H
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHH-H
Confidence            3333344444555555555 544 599999999999999999999999999999999999999999888877776663 4


Q ss_pred             hhHHHHHHHHHHHHHhhcccchHhHHHHHHhcCCCCchhhHHHHHHhhhhhHHHHHHhhHHHhhhccC-chHHHHHHHHH
Q 014481          200 AGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLG-WESVFYIFGLL  278 (423)
Q Consensus       200 ~~~~~~~~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g-w~~~~~~~~~~  278 (423)
                      .++.+.+ ++.++.|++.+...+...++..+.+|++ ++.+.++.. ...+|..++|.+.|.+.+..| ++..|++.++.
T Consensus       345 ~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~  421 (438)
T 3o7q_A          345 AGGHVGL-IALTLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALC  421 (438)
T ss_dssp             CCHHHHH-HHHHHHHHHHTTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHH
T ss_pred             cCCcHHH-HHHHHHHHHHHHHHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence            4443443 3448889999999999999999999855 888888877 567999999999999999988 99999876655


Q ss_pred             HHHHHH
Q 014481          279 GIAWFS  284 (423)
Q Consensus       279 ~~~~~~  284 (423)
                      .++.++
T Consensus       422 ~~~~~~  427 (438)
T 3o7q_A          422 FAVIFI  427 (438)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            544443

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.37  E-value=2.5e-12  Score=124.42  Aligned_cols=165  Identities=19%  Similarity=0.075  Sum_probs=124.6

Q ss_pred             HHHhhhhhhhhhHHHh-hhhhCCCcchhhHHHHHHHHHHHhhhhhhhhHhhHhcCchHHH-----HHHHHHHHHHHHHHH
Q 014481          125 ICNMDKVNLSVAIIPM-SHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQ-----TGVLIWSLATALLPL  198 (423)
Q Consensus       125 ~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~-----~~~~~~~~~~~~~~~  198 (423)
                      ............++.+ .+.++.+....+++.+...++..++.++.|++.||+|||+...     ++.++.+++.++...
T Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~  373 (491)
T 4aps_A          294 LFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAI  373 (491)
T ss_dssp             HHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHH
T ss_pred             HHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHH
Confidence            3333344444455554 4446777678889999999999999999999999999987655     666666666555433


Q ss_pred             hh--------hHHHHHHHHHHHHHhhcccchHhHHHHHHhcCCCCchhhHHHHHHhhhhhHHHHHHhhHHHhhhccCchH
Q 014481          199 LA--------GFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWES  270 (423)
Q Consensus       199 ~~--------~~~~~~~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw~~  270 (423)
                      ..        .+.+.++++.++.|++.+...+....++.|.+|+++|++++|+.+....+|..+++.+.+.+.+. ++.+
T Consensus       374 ~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~~-~~~~  452 (491)
T 4aps_A          374 PGALYGTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNAK-SEVA  452 (491)
T ss_dssp             HHHHCCCCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGGS-STTH
T ss_pred             HHHhcCCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cHHH
Confidence            21        24566777888999999998899999999999999999999999999999999999999988765 6777


Q ss_pred             HHHHHHHHHHHHHHHHHhhc
Q 014481          271 VFYIFGLLGIAWFSGFKILQ  290 (423)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~  290 (423)
                      .|++.+++.++..+..+++.
T Consensus       453 ~~~~~~~~~~~~~~~~~~~~  472 (491)
T 4aps_A          453 YFSYFGLGSVVLGIVLVFLS  472 (491)
T ss_dssp             HHHHTHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            88888877776655555443

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=99.35  E-value=3.7e-11  Score=116.19  Aligned_cols=181  Identities=11%  Similarity=0.017  Sum_probs=129.8

Q ss_pred             HHHHHHHHHHHHHHhhhhhhhhhHHHhhhhhCCCcchhhHHHHHHHHHHHhhhhhhhhHhhHhcCchHHHHHHHHHHHHH
Q 014481          114 KLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLAT  193 (423)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~  193 (423)
                      +.........+...........+.+.+.+..+.+............+...++.++.+++.||+|||+.++.+..+.+++.
T Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~  356 (491)
T 4gc0_A          277 VIVIGVMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGM  356 (491)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhhhHHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHH
Confidence            33444444445555555666667778888888888888888888889999999999999999999999999888877766


Q ss_pred             HHHHHhh----hHHHHHH-HHHHHHHhhcccchHhHHHHHHhcCCCCchhhHHHHHHhhhhhHHHHHHhhHHHhhh----
Q 014481          194 ALLPLLA----GFMPGLV-LSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIE----  264 (423)
Q Consensus       194 ~~~~~~~----~~~~~~~-~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~----  264 (423)
                      +.++...    .....++ +..+..+++ ....+....+.+|.+|.+.|++++|+......+|..+++.+.+.+.+    
T Consensus       357 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~  435 (491)
T 4gc0_A          357 FSLGTAFYTQAPGIVALLSMLFYVAAFA-MSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWL  435 (491)
T ss_dssp             HHHHHHHHTTCCHHHHHHHHHHHHHHHH-TTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHH
T ss_pred             HHHHHHHhcccchHHHHHHHHHHHHHHH-hHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5543221    1111122 222222333 23446778899999999999999999999999999999888766543    


Q ss_pred             --ccCchHHHHHHHHHHHHHHH-HHHhhccCCcC
Q 014481          265 --NLGWESVFYIFGLLGIAWFS-GFKILQEGETS  295 (423)
Q Consensus       265 --~~gw~~~~~~~~~~~~~~~~-~~~~~~~~~~~  295 (423)
                        ..++.+.|++.++++++..+ ..+++||++.+
T Consensus       436 ~~~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg~  469 (491)
T 4gc0_A          436 VAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGK  469 (491)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHHHHCCCCTTC
T ss_pred             HhhhhhhHHHHHHHHHHHHHHHHHHheecCCCCC
Confidence              34567788888888777654 45677877654

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=99.15  E-value=3.5e-11  Score=112.13  Aligned_cols=158  Identities=13%  Similarity=-0.028  Sum_probs=118.9

Q ss_pred             HHHHHHHHHHHHhhhhhhhhhHHHhhhh-hCCCcchhhHHHHHHHHHHHhhhhhhhhHhhHhcCchHHHHHHHH-HHHHH
Q 014481          116 IGTTSLAFVICNMDKVNLSVAIIPMSHR-FGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLI-WSLAT  193 (423)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~-~~~~~  193 (423)
                      +....+..++............|.+.++ +|.++.+.+++.+...++..++.++.+++.||+|++  +..+..+ ...+.
T Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~--~~~~~~~~~~~~~  278 (375)
T 2gfp_A          201 FNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTL--MWQSVICCLLAGL  278 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHH--HHHHHHHHHHTSS
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH
Confidence            3344444555555556666667765444 899999999999999999999999999999999883  2333222 22222


Q ss_pred             H--HHHHh-hhHHHHHHHHHHHHHhhcccchHhHHHHHHhcCCCCchhhHHHHHHhhhhhHHHHHHhhHHHhhhccCchH
Q 014481          194 A--LLPLL-AGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWES  270 (423)
Q Consensus       194 ~--~~~~~-~~~~~~~~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw~~  270 (423)
                      .  ..... .++.+.+++..++.|++.+...+...+++.|.+| ++|+++.|+.+....+|..++|.+.+.+.+..+|+.
T Consensus       279 ~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~  357 (375)
T 2gfp_A          279 LMWIPDWFGVMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAMLPQTGQGSL  357 (375)
T ss_dssp             SSSHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTHHHHHHHHHH
T ss_pred             HHHHHhhhccccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHHHhcCCcccH
Confidence            1  11111 2355667778889999999889999999999998 899999999999999999999999999988777877


Q ss_pred             HHHHHH
Q 014481          271 VFYIFG  276 (423)
Q Consensus       271 ~~~~~~  276 (423)
                      .+++.+
T Consensus       358 ~~~~~~  363 (375)
T 2gfp_A          358 GLLMTL  363 (375)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            766643

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=98.88  E-value=2.7e-09  Score=104.01  Aligned_cols=140  Identities=14%  Similarity=0.097  Sum_probs=98.1

Q ss_pred             hhhHHHHHHHHHHHhhhhhhhhHh----hHhcC----chHHHHHHHHHHHHHHHHHHhh--------hHHHHHHHHHHHH
Q 014481          150 VAGLVQSSFFWGYALSQLPGGWLA----KIFGG----RKVLQTGVLIWSLATALLPLLA--------GFMPGLVLSRVLV  213 (423)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~g~l~----dr~G~----r~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~l~  213 (423)
                      ..+++.....++..++.++.+++.    +|.|+    ++.+.++.++.+++.++.....        .+.+.+++..++.
T Consensus       336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  415 (524)
T 2xut_A          336 EPAMMQALNPLLVMLLIPFNNFVLYPAIERMGVKLTALRKMGAGIAITGLSWIVVGTIQLMMDGGSALSIFWQILPYALL  415 (524)
T ss_dssp             CHHHHHTTSGGGHHHHGGGTTTC------------CCHHHHHTHHHHHHHHHHTTTTTTTTTTTTCCCCSHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHhHHHHHhhhHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHH
Confidence            456666666666777777777764    55543    2456667777766665553321        2456677788999


Q ss_pred             HhhcccchHhHHHHHHhcCCCCchhhHHHHHHhhhhhHHHHHHhhHHHhhhcc--Cc---------hHHHHHHHHHHHHH
Q 014481          214 GIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENL--GW---------ESVFYIFGLLGIAW  282 (423)
Q Consensus       214 G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~--gw---------~~~~~~~~~~~~~~  282 (423)
                      |++.+...+....++.+..|+++|++++|+++....+|..+||.+.+.+.+..  +|         +..|++.+++.++.
T Consensus       416 g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  495 (524)
T 2xut_A          416 TFGEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKSPTVTEQIVQTGMSVTAFQMFFFAGFAILA  495 (524)
T ss_dssp             HHHHHHHHHHHTTTHHHHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTTSCHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999988742  23         33366666666665


Q ss_pred             HHHHHhh
Q 014481          283 FSGFKIL  289 (423)
Q Consensus       283 ~~~~~~~  289 (423)
                      .+..+++
T Consensus       496 ~~~~~~~  502 (524)
T 2xut_A          496 AIVFALY  502 (524)
T ss_dssp             HHHHC--
T ss_pred             HHHHHHH
Confidence            5544443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	423
d1pw4a_	447	f.38.1.1 (A:) Glycerol-3-phosphate transporter {Es	2e-23
d1pw4a_	447	f.38.1.1 (A:) Glycerol-3-phosphate transporter {Es	2e-06
d1pv7a_	417	f.38.1.2 (A:) Lactose permease {Escherichia coli [	2e-07
d1pv7a_	417	f.38.1.2 (A:) Lactose permease {Escherichia coli [	1e-06

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} Length = 447

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

 Score = 99.8 bits (247), Expect = 2e-23
 Identities = 48/289 (16%), Positives = 92/289 (31%), Gaps = 4/289 (1%)

Query: 112 RYKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGW 171
           R+++       +    + + N ++A+ P     G++    G   S     Y  S+   G 
Sbjct: 23  RWQIFLGIFFGYAAYYLVRKNFALAM-PYLVEQGFSRGDLGFALSGISIAYGFSKFIMGS 81

Query: 172 LAKIFGGRKVLQTGVLIWSLATA---LLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLI 228
           ++     R  L  G+++ +        +P     +  + +   L G  +G+        +
Sbjct: 82  VSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTM 141

Query: 229 ARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFSGFKI 288
                 +ER   VS      + G     LL    +                    + F  
Sbjct: 142 VHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAF 201

Query: 289 LQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCG 348
               +T     L P   Y N          E   + K +  + +  +K +W +  A+   
Sbjct: 202 AMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQELTAKQIFMQYVLPNKLLWYIAIANVFV 261

Query: 349 SWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFAD 397
               Y  L W PTY  E     L +++W   L   A +  T +    +D
Sbjct: 262 YLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSD 310

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} Length = 447

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

 Score = 47.0 bits (110), Expect = 2e-06
 Identities = 25/200 (12%), Positives = 51/200 (25%), Gaps = 5/200 (2%)

Query: 87  ESGQVRGTEEVGRASYWPPWKNIPQRYKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGW 146
                    E    +     + +     L         +  +    L  +   +     +
Sbjct: 223 YPDDYNEKAEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHF 282

Query: 147 NSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPG- 205
               +      + +      L  GW++          TGV   +L T    +      G 
Sbjct: 283 ALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGN 342

Query: 206 ---LVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFV-FGGLSFGSVAGLLLAPP 261
               ++  +++G                  P +    A  F    G   GSVA   +   
Sbjct: 343 PTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGY 402

Query: 262 IIENLGWESVFYIFGLLGIA 281
            ++  GW+  F +     I 
Sbjct: 403 TVDFFGWDGGFMVMIGGSIL 422

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} Length = 417

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

 Score = 50.5 bits (119), Expect = 2e-07
 Identities = 26/237 (10%), Positives = 53/237 (22%), Gaps = 11/237 (4%)

Query: 133 LSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLA 192
                I +      + S  G++ ++      L Q   G L+   G RK L   +    + 
Sbjct: 27  FPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVM 86

Query: 193 TALLPLLAGFMPGLVLSRVLV-----GIGEGVSPSAATDLIARSIPLEERSRAVSFVFGG 247
            A   +            V        +G   +  A              +         
Sbjct: 87  FAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMF 146

Query: 248 LSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYI 307
              G   G  +   +         +   G   I     F    +  +S            
Sbjct: 147 GCVGWALGASIVGIMFTINNQFVFWLGSGCALILAVLLFFAKTDAPSS------ATVANA 200

Query: 308 NMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLSWLPTYFS 364
                 + SL+   E  +      +       +  Y  F   + ++    +      
Sbjct: 201 VGANHSAFSLKLALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQG 257

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} Length = 417

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

 Score = 47.8 bits (112), Expect = 1e-06
 Identities = 22/195 (11%), Positives = 50/195 (25%), Gaps = 2/195 (1%)

Query: 90  QVRGTEEVGRASYWPPWKNIPQRYKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSS 149
            V                  P+ + L           ++     +             + 
Sbjct: 200 AVGANHSAFSLKLALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTR 259

Query: 150 VAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLS 209
           V G V +      A        +    GG+  L     I S+           +  ++L 
Sbjct: 260 VFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVIL- 318

Query: 210 RVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFG-GLSFGSVAGLLLAPPIIENLGW 268
           + L               I     +   +      F        +   +LA  + E++G+
Sbjct: 319 KTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGF 378

Query: 269 ESVFYIFGLLGIAWF 283
           +  + + GL+ + + 
Sbjct: 379 QGAYLVLGLVALGFT 393

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	423
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	99.97
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.8
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.62
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	99.58

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.97  E-value=1.3e-31  Score=254.75  Aligned_cols=292  Identities=15%  Similarity=0.171  Sum_probs=233.4

Q ss_pred             hhHHHHHHHHHHHHHHHhhhhhhhhhHHHhhhhhCCCcchhhHHHHHHHHHHHhhhhhhhhHhhHhcCchHHHHHHHHHH
Q 014481          111 QRYKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWS  190 (423)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~  190 (423)
                      .+|.++..++++++..+++...++...|.+. ++|+|.+++|++.+++.+++.++++++|+++||+|||+++.++.++.+
T Consensus        22 ~~w~i~~~~~~~~~~~~~~~~~~~~~~p~~~-~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~  100 (447)
T d1pw4a_          22 LRWQIFLGIFFGYAAYYLVRKNFALAMPYLV-EQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAA  100 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTSHHHHHHHTT-SSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHH
Confidence            3577777788888888888888888888775 589999999999999999999999999999999999999999999988


Q ss_pred             HHHHHHHHhh---hHHHHHHHHHHHHHhhcccchHhHHHHHHhcCCCCchhhHHHHHHhhhhhHHHHHHhhHHHhhhc-c
Q 014481          191 LATALLPLLA---GFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIEN-L  266 (423)
Q Consensus       191 ~~~~~~~~~~---~~~~~~~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~-~  266 (423)
                      ++.++++...   ++++.++++|++.|++.+...+...+++.|++|+++|++++++++.+..+|..++|.+++.+... .
T Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~  180 (447)
T d1pw4a_         101 AVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFN  180 (447)
T ss_dssp             HHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTC
T ss_pred             HHHhhccccchhhhhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcccccccccccccchhhhhhhhhhhhHhhhhh
Confidence            8887764432   45678999999999999999999999999999999999999999999999999999999887765 4


Q ss_pred             CchHHHHHHHHHHHHHHHHHHhhccCCcCcCCCCCcchhhhhhhhhhhhhHHhhccccCCCcHHHhhhcHHHHHHHHHHH
Q 014481          267 GWESVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHF  346 (423)
Q Consensus       267 gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  346 (423)
                      +||+.|++.+++.++..+..+++.+++++.......++......+ ......+.+...+...++..++++.++...+..+
T Consensus       181 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (447)
T d1pw4a_         181 DWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPD-DYNEKAEQELTAKQIFMQYVLPNKLLWYIAIANV  259 (447)
T ss_dssp             CSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTCCC--------------CCTHHHHHHTSSCHHHHHHHHHHH
T ss_pred             cccccchhhhhhHHHHHHHHHHhcccchhhcccchhhhhhhhccc-chhhccccccchhhHHHHHHHcCchHHHHHHHhh
Confidence            799999999888877666555554444333222111111110000 0111111122222334567888999999999999


Q ss_pred             HHHHHHHHHHhhhhHHHHHhhCCChhhHHHHHHHHHHHHHHHHHHHHHHhHHhhhcCC
Q 014481          347 CGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGV  404 (423)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~r~~  404 (423)
                      +.....+....+.|.|+.+.++++..+.+.......++.+++.++.|++.||+++++.
T Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  317 (447)
T d1pw4a_         260 FVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNR  317 (447)
T ss_dssp             HHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCH
T ss_pred             hhhhhhhcchhhhhhhcccccccccchhhhhhhcchhhhhhhhhhhhhhhhhcccccc
Confidence            9999999999999999999899999999999999999999999999999999987754

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.80  E-value=6.6e-19  Score=163.57  Aligned_cols=275  Identities=12%  Similarity=-0.008  Sum_probs=171.9

Q ss_pred             HHHHHHHHHHHHHHhhhhhhhhhHHH-hhhhhCCCcchhhHHHHHHHHHHHhhhhhhhhHhhHhcCchHHHHHHHHHHHH
Q 014481          114 KLIGTTSLAFVICNMDKVNLSVAIIP-MSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLA  192 (423)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~  192 (423)
                      +.++.+.+.+++..+......+.+|. +.+++|+|.+++|++.+++.++..++++++|+++||+|||++++++..+..++
T Consensus         7 ~~~~~l~~~~f~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~   86 (417)
T d1pv7a_           7 TNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVM   86 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTCTHHHHHHHHHHHT
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHH
Confidence            44555666667777777788888887 56779999999999999999999999999999999999999999998888777


Q ss_pred             HHHHHHhhhH---HHHHHHHHHHHHhhcccchHhHHHHHHhcCCC--CchhhHHHHHHhhhhhHHHHHHhhHHHhhhccC
Q 014481          193 TALLPLLAGF---MPGLVLSRVLVGIGEGVSPSAATDLIARSIPL--EERSRAVSFVFGGLSFGSVAGLLLAPPIIENLG  267 (423)
Q Consensus       193 ~~~~~~~~~~---~~~~~~~~~l~G~~~~~~~~~~~~~i~~~~~~--~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g  267 (423)
                      ..+.......   ....++.+++.+.+.+...........+..++  +++....+........+..+++.+++.+.+. +
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~  165 (417)
T d1pv7a_          87 FAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTI-N  165 (417)
T ss_dssp             HHHHHHHTHHHHHHTTCHHHHHHTTTTGGGGGTTHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHHHH-C
T ss_pred             HHHHHHhhhhhhHHHHHHHHHHHhhhcccccccchhhcccccccchhhhhHHHHHHHhhhhccccccccccccccccc-c
Confidence            7666333222   12234455555555555444444444443332  3455677788888899999999999998876 5


Q ss_pred             chHHHHHHHHHHHHH-HHHHHhhccCCcCcCCCCCcchhhhhhhhhhhhhHHhhccccCCCcHHHhhhcHHHHHHHHHHH
Q 014481          268 WESVFYIFGLLGIAW-FSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHF  346 (423)
Q Consensus       268 w~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  346 (423)
                      |++.++.......+. .+..+..++++.....+.++++.               .+........+.++++..+...+..+
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (417)
T d1pv7a_         166 NQFVFWLGSGCALILAVLLFFAKTDAPSSATVANAVGAN---------------HSAFSLKLALELFRQPKLWFLSLYVI  230 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHSSCCCSCSSSCSSHHHHSC---------------CCCCCHHHHHHHTTSSHHHHHHHHHH
T ss_pred             ccccccchhhHHHHHHHHHHHHhcccccchhhhhhhhhh---------------cccccccccccccccccccchhhhhH
Confidence            555555555554444 44444444433322221111000               00000011223344444444433333


Q ss_pred             HHHHHHHHHHhhhhHHHH---HhhCCChhhHHHHHHHHHHHHHHHHHHHHHHhHHhhhcCC
Q 014481          347 CGSWGHYTCLSWLPTYFS---EELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGV  404 (423)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~---~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~r~~  404 (423)
                      .............+.+..   +..+.+....+.......++..++..+.+++.||.++|+.
T Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~  291 (417)
T d1pv7a_         231 GVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNA  291 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHHH
T ss_pred             HHHHHHHhhhccccccccccccccccchhhhcccccccccccccchhhhhhhhcccccccc
Confidence            333333333333333332   2234455666777888888999999999999999998743

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.62  E-value=7.2e-16  Score=142.64  Aligned_cols=152  Identities=13%  Similarity=0.043  Sum_probs=130.3

Q ss_pred             hhhhhCCCcchhhHHHHHHHHHHHhhhhhhhhHhhHhcCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhccc
Q 014481          140 MSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSRVLVGIGEGV  219 (423)
Q Consensus       140 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~  219 (423)
                      ..++.+.+....+...+...++..++..+.+++.||+|+|+.+.++.++.+++.++. ...++.+.+++..++.|++.+.
T Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~g~~~~~  328 (417)
T d1pv7a_         250 FFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGS-SFATSALEVVILKTLHMFEVPF  328 (417)
T ss_dssp             SSSCHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHH-HTCCCHHHHHHHHHHHHHHHHH
T ss_pred             cccccccchhhhcccccccccccccchhhhhhhhcccccccchhhhHHHHHHhhhcc-ccccccchhhHHHHHHHHHHHH
Confidence            444455667778888899999999999999999999999999999999988887776 4566668888889999999999


Q ss_pred             chHhHHHHHHhcCCCCchhhHHHHH-HhhhhhHHHHHHhhHHHhhhccCchHHHHHHHHHHHHHHHHHHhhccC
Q 014481          220 SPSAATDLIARSIPLEERSRAVSFV-FGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFSGFKILQEG  292 (423)
Q Consensus       220 ~~~~~~~~i~~~~~~~~r~~~~~~~-~~~~~~g~~~g~~~~~~l~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~  292 (423)
                      ..+...+++.|.+|++.|+++.++. +....+|..++|.++|++.+..||++.|++.+++.++..++..++.+.
T Consensus       329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~  402 (417)
T d1pv7a_         329 LLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSG  402 (417)
T ss_dssp             HHHHHHHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred             HHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence            9999999999999999999999985 566789999999999999999999999999998887765555554443

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.58  E-value=1.1e-14  Score=136.74  Aligned_cols=173  Identities=14%  Similarity=0.039  Sum_probs=128.4

Q ss_pred             HHHHHHHHHHHhhhhhhhhhHHH-hhhhhCCCcchhhHHHHHHHHHHHhhhhhhhhHhhHhcCchHHHHHHHHHHHHHHH
Q 014481          117 GTTSLAFVICNMDKVNLSVAIIP-MSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATAL  195 (423)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~  195 (423)
                      ..+....++............+. +.+.++.+..+.++..+...++..++.++.|++.||++|++..........+....
T Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  331 (447)
T d1pw4a_         252 WYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIA  331 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhhhhhhhhcchhhhhhhcccccccccchhhhhhhcchhhhhhhhhhhhhhhhhccccccccccchhHHHHHHH
Confidence            33344444444444444445554 56678999999999999999999999999999999999876554443333222222


Q ss_pred             HHH----hhhHHHHHHHHHHHHHhhcccchHhHHHHHHhcCCCCchhhHHHHHHhhhhh-HHHHHHhhHHHhhhccCchH
Q 014481          196 LPL----LAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSF-GSVAGLLLAPPIIENLGWES  270 (423)
Q Consensus       196 ~~~----~~~~~~~~~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-g~~~g~~~~~~l~~~~gw~~  270 (423)
                      ...    ...+.+..+++.++.|++.+...+....+..|.+|++.|++++|+.+....+ |.+++|.+.|.+.+..||+.
T Consensus       332 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~g~~~~~~~~g~~~~~~g~~~  411 (447)
T d1pw4a_         332 TIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDG  411 (447)
T ss_dssp             HHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHH
T ss_pred             HHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHH
Confidence            111    1345567777888889988888888999999999999999999999887776 56778999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhh
Q 014481          271 VFYIFGLLGIAWFSGFKIL  289 (423)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~  289 (423)
                      .|++.+...++..++..++
T Consensus       412 ~~~~~~~~~~~~~~~~~~~  430 (447)
T d1pw4a_         412 GFMVMIGGSILAVILLIVV  430 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            9998887776665544444