Citrus Sinensis ID: 014498

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420---
MSGILFHKYGGEDLDSYYPIRPECQADVPKVRFKARAGKTLSARRWHAAFSEDGHLDIAKVLRRIQRGGIHPSIKGLVWEFLLGCYDPNSTFEERNQIRQQRRQQYAAWKTECQNIVPIIGSGKFITAAIVTDDGQSLQDSNRDSLDQGWHVDGAISDKKVLQWMLGLHQIGLDVVRTDRSLVFYESETNQAKLWDVLAIYSWVDNDIGYVQGMNDICSPMIVLLENEADAFWCFEHTMRRLRENFRTNTGMIGVQSQLSTLSQIIRTIDPKLHQHLEDLDGGEYLFAFRMLMVLFRREFSFVDALYLWELMWAMEYNPNIFSLYESNSSTSDGRQVNDKQLKQCGKFERKNVKTGLPDKTSALSVFLVASVLETKNKKLLREAKGLDDVVKILADITGNLDAKKACNEALKIQKKYLSKSKK
ccccccccccccccccccccccccccccccccccccccccccHHHHHHHHcccccccHHHHHHHHHccccccccHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccEEEccccccccccccccccccccccccccHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHccHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHcHHHHHHHHHccccccEEEHHHHHHHHHHHHcHHHHHHHHHHHHHcccccccccEEcccccccccccccHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHcc
cccEEEccccccccccccccccccccccccccccccccccccHHHHHHHcccccccccHHHHHHHHHccccHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccEEEEEEEEccccccccccccccccccccccccHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHcHHHHHHHHHcccccHHHHHHHHHHHHHHHccHHHHHHHHHHHHHcccccccEEHEHHHHHHHHHccHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHccc
msgilfhkyggedldsyypirpecqadvpkvRFKARAGKTLSARRWHAAFSEDGHLDIAKVLRRIqrggihpsikGLVWEFLlgcydpnstfeERNQIRQQRRQQYAAWKTECqnivpiigsgkFITAAivtddgqslqdsnrdsldqgwhvdgaiSDKKVLQWMLGLHQIGLDVVRTDRSLVFYESETNQAKLWDVLAIYSWvdndigyvqgmndICSPMIVLLENEADAFWCFEHTMRRLRENFrtntgmigvQSQLSTLSQIIRTIDPKLHqhledldggEYLFAFRMLMVLFRREFSFVDALYLWELMWAMeynpnifslyesnsstsdgrqvndkqLKQCGkferknvktglpdktsALSVFLVASVLETKNKKLLREAKGLDDVVKILADITGNLDAKKACNEALKIQKKYLSKSKK
msgilfhkyggedldsyYPIRPECQADVPKVRFKARAGKTLSARRWHaafsedghldIAKVLRRIQRGGIHPSIKGLVWEFLLGCYDPNSTFEERNQIRQQRRQQYAAWKTECQNIVPIIGSGKFITAAIVTDDGQSLQDSNRDSLDQGWHVDGAISDKKVLQWMLGLHQIGLDVVRTDRSLVFYesetnqaklwDVLAIYSWVDNDIGYVQGMNDICSPMIVLLENEADAFWCFEHTMRRLRENFRTNTGMIGVQSQLSTLSQIIRTIDPKLHQHLEDLDGGEYLFAFRMLMVLFRREFSFVDALYLWELMWAMEYNPNIFSLYESNSSTSDGRQVNDKQLKQCGKferknvktglpdktsaLSVFLVASVLETknkkllreakglddVVKILADItgnldakkaCNEALKIqkkylskskk
MSGILFHKYGGEDLDSYYPIRPECQADVPKVRFKARAGKTLSARRWHAAFSEDGHLDIAKVLRRIQRGGIHPSIKGLVWEFLLGCYDPNSTFEErnqirqqrrqqYAAWKTECQNIVPIIGSGKFITAAIVTDDGQSLQDSNRDSLDQGWHVDGAISDKKVLQWMLGLHQIGLDVVRTDRSLVFYESETNQAKLWDVLAIYSWVDNDIGYVQGMNDICSPMIVLLENEADAFWCFEHTMRRLRENFRTNTGMIGVQSQLSTLSQIIRTIDPKLHQHLEDLDGGEYLFAFRMLMVLFRREFSFVDALYLWELMWAMEYNPNIFSLYESNSSTSDGRQVNDKQLKQCGKFERKNVKTGLPDKTSALSVFLVASVLETKNKKLLREAKGLDDVVKILADITGNLDAKKACNEAlkiqkkylskskk
***ILFHKYGGEDLDSYYPIRPECQADVPKVRFKARAGKTLSARRWHAAFSEDGHLDIAKVLRRIQRGGIHPSIKGLVWEFLLGCYDPNSTFE****I**QRRQQYAAWKTECQNIVPIIGSGKFITAAIVTD*************DQGWHVDGAISDKKVLQWMLGLHQIGLDVVRTDRSLVFYESETNQAKLWDVLAIYSWVDNDIGYVQGMNDICSPMIVLLENEADAFWCFEHTMRRLRENFRTNTGMIGVQSQLSTLSQIIRTIDPKLHQHLEDLDGGEYLFAFRMLMVLFRREFSFVDALYLWELMWAMEYNPNIFSLY***********************************TSALSVFLVASVLETKNKKLLREAKGLDDVVKILADITGNLDAKKACNEALKI**********
********************************************RWHAAFSEDGHLDIAKVLRRIQRGGIHPSIKGLVWEFLLGCYDPNSTFEERNQIRQQRRQQYAAWKTECQNIVPIIGSGKFITAAIVTDDGQSL************HVDGAISDKKVLQWMLGLHQIGLDVVRTDRSLVFYESETNQAKLWDVLAIYSWVDNDIGYVQGMNDICSPMIVLLENEADAFWCFEHTMRRLRENFRTNTGMIGVQSQLSTLSQIIRTIDPKLHQHLEDLDGGEYLFAFRMLMVLFRREFSFVDALYLWELMWAMEYNPNIFSLYESNSSTSD*************************DKTSALSVFLVASVLETKNKKLLREAKGLDDVVKILADITGNLDAKKACNEALKIQKKYLSK***
MSGILFHKYGGEDLDSYYPIRPECQADVPKVRFKARAGKTLSARRWHAAFSEDGHLDIAKVLRRIQRGGIHPSIKGLVWEFLLGCYDPNSTFEER************AWKTECQNIVPIIGSGKFITAAIVTDDGQSLQDSNRDSLDQGWHVDGAISDKKVLQWMLGLHQIGLDVVRTDRSLVFYESETNQAKLWDVLAIYSWVDNDIGYVQGMNDICSPMIVLLENEADAFWCFEHTMRRLRENFRTNTGMIGVQSQLSTLSQIIRTIDPKLHQHLEDLDGGEYLFAFRMLMVLFRREFSFVDALYLWELMWAMEYNPNIFSLYES***********DKQLKQCGKFERKNVKTGLPDKTSALSVFLVASVLETKNKKLLREAKGLDDVVKILADITGNLDAKKACNEALKIQKKYLSKSKK
********YGGEDLDSYYPIRPECQADVPK*******GKTLSARRWHAAFSEDGHLDIAKVLRRIQRGGIHPSIKGLVWEFLLGCYDPNSTFEERNQIRQQRRQQYAAWKTECQNIVPIIGSGKFITAAIVTDDGQS********************DKKVLQWMLGLHQIGLDVVRTDRSLVFYESETNQAKLWDVLAIYSWVDNDIGYVQGMNDICSPMIVLLENEADAFWCFEHTMRRLRENFRTNTGMIGVQSQLSTLSQIIRTIDPKLHQHLEDLDGGEYLFAFRMLMVLFRREFSFVDALYLWELMWAMEYNPNIFSLYESNSSTSDGRQVNDKQLKQCGKFERKNVKTGLPDKTSALSVFLVASVLETKNKKLLREAKGLDDVVKILADITGNLDAKKACNEALKIQKKYLSKS**
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MSGILFHKYGGEDLDSYYPIRPECQADVPKVRFKARAGKTLSARRWHAAFSEDGHLDIAKVLRRIQRGGIHPSIKGLVWEFLLGCYDPNSTFEERNQIRQQRRQQYAAWKTECQNIVPIIGSGKFITAAIVTDDGQSLQDSNRDSLDQGWHVDGAISDKKVLQWMLGLHQIGLDVVRTDRSLVFYESETNQAKLWDVLAIYSWVDNDIGYVQGMNDICSPMIVLLENEADAFWCFEHTMRRLRENFRTNTGMIGVQSQLSTLSQIIRTIDPKLHQHLEDLDGGEYLFAFRMLMVLFRREFSFVDALYLWELMWAMEYNPNIFSLYESNSSTSDGRQVNDKQLKQCGKFERKNVKTGLPDKTSALSVFLVASVLETKNKKLLREAKGLDDVVKILADITGNLDAKKACNEALKIQKKYLSKSKK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query423 2.2.26 [Sep-21-2011]
Q9CXF4671 TBC1 domain family member yes no 0.560 0.353 0.336 2e-37
Q8TC07691 TBC1 domain family member yes no 0.560 0.342 0.340 2e-36
Q9UUH7743 GTPase-activating protein yes no 0.626 0.356 0.302 7e-28
P09379730 GTPase-activating protein yes no 0.572 0.331 0.290 2e-27
Q6FWI1745 GTPase-activating protein yes no 0.754 0.428 0.252 6e-27
Q8BYH7645 TBC1 domain family member no no 0.600 0.393 0.293 2e-26
Q9HA65648 TBC1 domain family member no no 0.600 0.391 0.304 7e-26
Q6BU76757 GTPase-activating protein yes no 0.617 0.344 0.268 8e-26
A1A5B6 742 TBC1 domain family member no no 0.546 0.311 0.266 3e-25
P48365746 GTPase-activating protein yes no 0.697 0.395 0.237 5e-25
>sp|Q9CXF4|TBC15_MOUSE TBC1 domain family member 15 OS=Mus musculus GN=Tbc1d15 PE=1 SV=1 Back     alignment and function desciption
 Score =  156 bits (395), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 94/279 (33%), Positives = 148/279 (53%), Gaps = 42/279 (15%)

Query: 39  KTLSARRWHAAFSEDGHL-DIAKVLRRIQRGGIHPSIKGLVWEFLLGCYDPNSTFEERNQ 97
           + +S   W+ +   +G L  +  + ++I RGG+  S++   W+FLLG +  +ST EER Q
Sbjct: 298 EPVSLEEWNKSLDPEGRLVAVESMKQKIFRGGLSHSLRKQAWKFLLGYFPWDSTKEERTQ 357

Query: 98  IRQQRRQQYAAWKTECQNIVPIIGSGKFITAAIVTDDGQSLQDSNRDSLDQGWHVDGAIS 157
           +++Q+  +Y   K + +++                 + Q  ++S              + 
Sbjct: 358 LQKQKTDEYFRMKLQWKSV----------------SEAQEKRNSR-------------LR 388

Query: 158 DKKVLQWMLGLHQIGLDVVRTDRSLVFYESETNQAK--LWDVLAIYSWVDNDIGYVQGMN 215
           D + L        I  DV RTDR+  FYE + N     L D+L  Y   D D+GYVQGM+
Sbjct: 389 DYRSL--------IEKDVNRTDRTNKFYEGQDNPGLILLHDILMTYCMYDFDLGYVQGMS 440

Query: 216 DICSPMIVLLENEADAFWCFEHTMRRLRENFRTNTGMIGVQSQLSTLSQIIRTIDPKLHQ 275
           D+ SP++ ++ENE DAFWCF   M ++ +NF     M G+++QL  LS ++R +D     
Sbjct: 441 DLLSPLLYVMENEVDAFWCFASYMDQMHQNFEEQ--MQGMKTQLIQLSTLLRLLDSGFCS 498

Query: 276 HLEDLDGGEYLFAFRMLMVLFRREFSFVDALYLWELMWA 314
           +LE  D G   F FR L++ F+REFSF+D L LWE+MW 
Sbjct: 499 YLESQDSGYLYFCFRWLLIRFKREFSFLDILRLWEVMWT 537
Acts as a GTPase activating protein for RAB7A. Does not act on RAB4, RAB5 or RAB6.
Mus musculus (taxid: 10090)
>sp|Q8TC07|TBC15_HUMAN TBC1 domain family member 15 OS=Homo sapiens GN=TBC1D15 PE=1 SV=2 Back     alignment and function description
>sp|Q9UUH7|GYP7_SCHPO GTPase-activating protein gyp7 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=gyp7 PE=3 SV=1 Back     alignment and function description
>sp|P09379|GYP7_YARLI GTPase-activating protein GYP7 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=GYP7 PE=3 SV=2 Back     alignment and function description
>sp|Q6FWI1|GYP7_CANGA GTPase-activating protein GYP7 OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=GYP7 PE=3 SV=1 Back     alignment and function description
>sp|Q8BYH7|TBC17_MOUSE TBC1 domain family member 17 OS=Mus musculus GN=Tbc1d17 PE=2 SV=2 Back     alignment and function description
>sp|Q9HA65|TBC17_HUMAN TBC1 domain family member 17 OS=Homo sapiens GN=TBC1D17 PE=1 SV=2 Back     alignment and function description
>sp|Q6BU76|GYP7_DEBHA GTPase-activating protein GYP7 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=GYP7 PE=3 SV=2 Back     alignment and function description
>sp|A1A5B6|TBC25_MOUSE TBC1 domain family member 25 OS=Mus musculus GN=Tbc1d25 PE=1 SV=1 Back     alignment and function description
>sp|P48365|GYP7_YEAST GTPase-activating protein GYP7 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=GYP7 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query423
297744173486 unnamed protein product [Vitis vinifera] 0.995 0.866 0.759 0.0
359480030451 PREDICTED: TBC1 domain family member 25- 1.0 0.937 0.734 0.0
255577934421 conserved hypothetical protein [Ricinus 0.957 0.961 0.749 0.0
224082860418 predicted protein [Populus trichocarpa] 0.955 0.966 0.735 0.0
297803220424 RabGAP/TBC domain-containing protein [Ar 0.973 0.971 0.702 1e-178
42567218424 RabGAP/TBC domain-containing protein [Ar 0.973 0.971 0.702 1e-178
356536848424 PREDICTED: TBC1 domain family member 15- 0.973 0.971 0.705 1e-177
356548075413 PREDICTED: TBC1 domain family member 15- 0.957 0.980 0.707 1e-176
42569183425 RabGAP/TBC domain-containing protein [Ar 0.962 0.957 0.684 1e-174
449463220418 PREDICTED: LOW QUALITY PROTEIN: TBC1 dom 0.929 0.940 0.687 1e-170
>gi|297744173|emb|CBI37143.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  679 bits (1751), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 322/424 (75%), Positives = 364/424 (85%), Gaps = 3/424 (0%)

Query: 3   GILFHKYGGEDLDSYYPIRPECQADVPKVRFKARAGKTLSARRWHAAFSEDGHLDIAKVL 62
           GIL       ++DS+Y IRPECQ+DVPK+RFK RAGKTLSARRWHAAFS+DGHLDI KVL
Sbjct: 62  GILMKNSANGEVDSFYAIRPECQSDVPKIRFKPRAGKTLSARRWHAAFSQDGHLDIEKVL 121

Query: 63  RRIQRGGIHPSIKGLVWEFLLGCYDPNSTFEERNQIRQQRRQQYAAWKTECQNIVPIIGS 122
           RRIQRGG+HPSIKG+VWEFLLGC+DPNSTF+ERN++RQQRRQQY A K ECQ + P+IGS
Sbjct: 122 RRIQRGGVHPSIKGVVWEFLLGCFDPNSTFDERNELRQQRRQQYGALKAECQKMAPVIGS 181

Query: 123 GKFITAAIVTDDGQSLQDSNRDSLDQGWHVDGAISDKKVLQWMLGLHQIGLDVVRTDRSL 182
           GKFIT  IVT D  S        LD G HVD A+ DKKV+QW L LHQIGLDVVRTDR+L
Sbjct: 182 GKFITTPIVTVDATSTPSPLDSPLDDGGHVDDAVPDKKVIQWKLMLHQIGLDVVRTDRTL 241

Query: 183 VFYESETNQAKLWDVLAIYSWVDNDIGYVQGMNDICSPMIVLLENEADAFWCFEHTMRRL 242
           VFYESE NQAKLWDVLA+Y+W+DNDIGY QGMNDICSPM++L+ENEADAFWCFE  MRRL
Sbjct: 242 VFYESEANQAKLWDVLAVYAWMDNDIGYCQGMNDICSPMVILIENEADAFWCFERAMRRL 301

Query: 243 RENFRTNTGMIGVQSQLSTLSQIIRTIDPKLHQHLEDLDGGEYLFAFRMLMVLFRREFSF 302
           RENFR +T  IGVQSQL TLS+II+ +DP+LHQHLEDLDGGEYLFAFRMLMVLFRREFSF
Sbjct: 302 RENFRVSTNSIGVQSQLGTLSEIIKAVDPQLHQHLEDLDGGEYLFAFRMLMVLFRREFSF 361

Query: 303 VDALYLWELMWAMEYNPNIFSLYESNSSTSD---GRQVNDKQLKQCGKFERKNVKTGLPD 359
           VDALYLWELMWAMEYNPNIFS YE +S+++D    +  N K LK+CGKFERKNVKTG  +
Sbjct: 362 VDALYLWELMWAMEYNPNIFSSYEESSASADKSSTQNTNGKMLKKCGKFERKNVKTGYKN 421

Query: 360 KTSALSVFLVASVLETKNKKLLREAKGLDDVVKILADITGNLDAKKACNEALKIQKKYLS 419
           + S+L+VFLVASVL TKNK+ L+EAKGLDDVVKIL DITGNLDAKKACNEALK+ KKYLS
Sbjct: 422 QHSSLAVFLVASVLATKNKRFLKEAKGLDDVVKILGDITGNLDAKKACNEALKLHKKYLS 481

Query: 420 KSKK 423
           K+KK
Sbjct: 482 KAKK 485

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|359480030|ref|XP_002272358.2| PREDICTED: TBC1 domain family member 25-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|255577934|ref|XP_002529839.1| conserved hypothetical protein [Ricinus communis] gi|223530667|gb|EEF32540.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|224082860|ref|XP_002306868.1| predicted protein [Populus trichocarpa] gi|222856317|gb|EEE93864.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|297803220|ref|XP_002869494.1| RabGAP/TBC domain-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297315330|gb|EFH45753.1| RabGAP/TBC domain-containing protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|42567218|ref|NP_194584.3| RabGAP/TBC domain-containing protein [Arabidopsis thaliana] gi|119935837|gb|ABM06008.1| At4g28550 [Arabidopsis thaliana] gi|332660104|gb|AEE85504.1| RabGAP/TBC domain-containing protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|356536848|ref|XP_003536945.1| PREDICTED: TBC1 domain family member 15-like [Glycine max] Back     alignment and taxonomy information
>gi|356548075|ref|XP_003542429.1| PREDICTED: TBC1 domain family member 15-like [Glycine max] Back     alignment and taxonomy information
>gi|42569183|ref|NP_179634.2| RabGAP/TBC domain-containing protein [Arabidopsis thaliana] gi|238479300|ref|NP_001154525.1| RabGAP/TBC domain-containing protein [Arabidopsis thaliana] gi|330251913|gb|AEC07007.1| RabGAP/TBC domain-containing protein [Arabidopsis thaliana] gi|330251914|gb|AEC07008.1| RabGAP/TBC domain-containing protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|449463220|ref|XP_004149332.1| PREDICTED: LOW QUALITY PROTEIN: TBC1 domain family member 15-like [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query423
TAIR|locus:2121353424 AT4G28550 [Arabidopsis thalian 0.947 0.945 0.692 8.2e-154
TAIR|locus:2038922425 AT2G20440 [Arabidopsis thalian 0.945 0.941 0.673 3.2e-152
TAIR|locus:2136442436 AT4G27100 [Arabidopsis thalian 0.943 0.915 0.574 2.5e-129
TAIR|locus:2160145432 AT5G54780 [Arabidopsis thalian 0.940 0.921 0.589 1.2e-127
TAIR|locus:2058228 745 AT2G43490 [Arabidopsis thalian 0.408 0.232 0.477 1.8e-60
TAIR|locus:2097573 720 AT3G59570 [Arabidopsis thalian 0.468 0.275 0.436 3.9e-59
TAIR|locus:2165710549 AT5G41940 [Arabidopsis thalian 0.286 0.220 0.455 3.9e-44
UNIPROTKB|A8K8E1445 TBC1D15 "TBC1 domain family, m 0.326 0.310 0.464 2.9e-41
TAIR|locus:2168591577 AT5G53570 [Arabidopsis thalian 0.286 0.209 0.447 4.3e-40
MGI|MGI:1913937671 Tbc1d15 "TBC1 domain family, m 0.326 0.205 0.464 5e-40
TAIR|locus:2121353 AT4G28550 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1500 (533.1 bits), Expect = 8.2e-154, P = 8.2e-154
 Identities = 279/403 (69%), Positives = 334/403 (82%)

Query:     8 KYGGEDLDSYYPIRPECQADVPKVRFKARAGKTLSARRWHAAFSEDGHLDIAKVLRRIQR 67
             K GGEDL  +YP+R EC ADVP+ RFK+RAGKTLSAR+WHAAF+ DGHLD+ +VLRRIQR
Sbjct:     9 KSGGEDLQGFYPVREECVADVPRTRFKSRAGKTLSARKWHAAFTGDGHLDMERVLRRIQR 68

Query:    68 GGIHPSIKGLVWEFLLGCYDPNSTFEEXXXXXXXXXXXYAAWKTECQNIVPIIGSGKFIT 127
             GGIHPSIKG VWEFLLG YDP+STFEE           Y AWK EC+N+VP++GSGKF+T
Sbjct:    69 GGIHPSIKGEVWEFLLGAYDPDSTFEERNKLRNHRREQYYAWKEECKNMVPLVGSGKFVT 128

Query:   128 AAIVTDDGQSLQDSNRDSLDQGWHVDGAISDKKVLQWMLGLHQIGLDVVRTDRSLVFYES 187
              A+V +DGQ L++S+ D+  Q W V  AI+DK+VLQWML L QIGLDVVRTDR L FYES
Sbjct:   129 MAVVAEDGQPLEESSVDN--QEWVVKTAITDKRVLQWMLVLSQIGLDVVRTDRYLCFYES 186

Query:   188 ETNQAKLWDVLAIYSWVDNDIGYVQGMNDICSPMIVLLENEADAFWCFEHTMRRLRENFR 247
             E+NQA+LWD+L+IY+W++ DIGYVQGMNDICSPMI+LLE+EADAFWCFE  MRRLRENFR
Sbjct:   187 ESNQARLWDILSIYTWLNPDIGYVQGMNDICSPMIILLEDEADAFWCFERAMRRLRENFR 246

Query:   248 TNTGMIGVQSQLSTLSQIIRTIDPKLHQHLEDLDGGEYLFAFRMLMVLFRREFSFVDALY 307
             T    +GVQ+QL  LSQ+I+T+DP+LHQHLEDLDGGEYLFA RMLMVLFRREFSF+DALY
Sbjct:   247 TTATSMGVQTQLGMLSQVIKTVDPRLHQHLEDLDGGEYLFAIRMLMVLFRREFSFLDALY 306

Query:   308 LWELMWAMEYNPNIFSLYESNSSTSDGRQVNDKQLKQCGKFERKNVKTGLPDKTSALSVF 367
             LWELMWAMEYNPN F+ YE   + ++    + + LKQ GKFERK +K+G  ++ + L+VF
Sbjct:   307 LWELMWAMEYNPNKFASYEEPQNMNNSSGQDPRLLKQYGKFERKYIKSGQNEQHNTLAVF 366

Query:   368 LVASVLETKNKKLLREAKGLDDVVKILADITGNLDAKKACNEA 410
             +VASVLETKNK+LL+EAKGLDDVV+IL  I GNLDA+KAC EA
Sbjct:   367 VVASVLETKNKRLLKEAKGLDDVVQILGGIAGNLDARKACKEA 409
GO:0005097 "Rab GTPase activator activity" evidence=IEA
GO:0005622 "intracellular" evidence=IEA
GO:0005737 "cytoplasm" evidence=ISM
GO:0032313 "regulation of Rab GTPase activity" evidence=IEA
TAIR|locus:2038922 AT2G20440 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2136442 AT4G27100 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2160145 AT5G54780 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2058228 AT2G43490 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2097573 AT3G59570 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2165710 AT5G41940 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|A8K8E1 TBC1D15 "TBC1 domain family, member 15, isoform CRA_d" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
TAIR|locus:2168591 AT5G53570 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
MGI|MGI:1913937 Tbc1d15 "TBC1 domain family, member 15" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
fgenesh4_pg.C_LG_V001417
hypothetical protein (418 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query423
pfam00566206 pfam00566, RabGAP-TBC, Rab-GTPase-TBC domain 3e-38
smart00164216 smart00164, TBC, Domain in Tre-2, BUB2p, and Cdc16 4e-38
COG5210496 COG5210, COG5210, GTPase-activating protein [Gener 2e-29
>gnl|CDD|215997 pfam00566, RabGAP-TBC, Rab-GTPase-TBC domain Back     alignment and domain information 
 Score =  136 bits (345), Expect = 3e-38
 Identities = 54/186 (29%), Positives = 88/186 (47%), Gaps = 4/186 (2%)

Query: 141 SNRDSLDQGWHVDGAISDKKVLQWMLGLHQIGLDVVRTDRSLVFYESETNQAKLWDVLAI 200
               S  +        S    L+      QI  DV RT     F+++   Q +L  +L  
Sbjct: 12  LGNLSESKQRDSVSQYSKLLKLEDSPDEEQIEKDVPRTFPHHFFFKNGEGQQQLRRILKA 71

Query: 201 YSWVDNDIGYVQGMNDICSPMIVLLENEADAFWCFEHTMRR-LRENFRTNTGMIGVQSQL 259
           YS  + D+GY QGMN I +P+++++ +E +AFWCF   +   LR+ F  +    G+Q  L
Sbjct: 72  YSIYNPDVGYCQGMNFIAAPLLLVVLDEEEAFWCFVSLLEYLLRDFFLPS--FPGLQRDL 129

Query: 260 STLSQIIRTIDPKLHQHLEDLDGGEYLFAFRMLMVLFRREFSFVDALYLWELMWAMEYNP 319
               ++++  DP+L++HL+ L     LFA +  + LF RE      L LW+L        
Sbjct: 130 YVFEELLKKHDPELYKHLQKLGLDPSLFASKWFLTLFARELPLETVLRLWDLFLE-GGKF 188

Query: 320 NIFSLY 325
            +F + 
Sbjct: 189 FLFRVA 194

Identification of a TBC domain in GYP6_YEAST and GYP7_YEAST, which are GTPase activator proteins of yeast Ypt6 and Ypt7, implies that these domains are GTPase activator proteins of Rab-like small GTPases. Length = 206
>gnl|CDD|214540 smart00164, TBC, Domain in Tre-2, BUB2p, and Cdc16p Back     alignment and domain information
>gnl|CDD|227535 COG5210, COG5210, GTPase-activating protein [General function prediction only] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 423
KOG4567370 consensus GTPase-activating protein [General funct 100.0
KOG2058436 consensus Ypt/Rab GTPase activating protein [Intra 100.0
KOG1092484 consensus Ypt/Rab-specific GTPase-activating prote 100.0
KOG2224781 consensus Uncharacterized conserved protein, conta 100.0
smart00164199 TBC Domain in Tre-2, BUB2p, and Cdc16p. Probable R 100.0
KOG2223586 consensus Uncharacterized conserved protein, conta 100.0
KOG2197488 consensus Ypt/Rab-specific GTPase-activating prote 100.0
COG5210496 GTPase-activating protein [General function predic 100.0
PF00566214 RabGAP-TBC: Rab-GTPase-TBC domain; InterPro: IPR00 100.0
KOG1091 625 consensus Ypt/Rab-specific GTPase-activating prote 99.97
KOG1093 725 consensus Predicted protein kinase (contains TBC a 99.97
KOG2222 848 consensus Uncharacterized conserved protein, conta 99.97
KOG4347 671 consensus GTPase-activating protein VRP [General f 99.96
KOG2595395 consensus Predicted GTPase activator protein [Sign 99.96
KOG4436 948 consensus Predicted GTPase activator NB4S/EVI5 (co 99.95
KOG1102397 consensus Rab6 GTPase activator GAPCenA and relate 99.9
KOG2221267 consensus PDZ-domain interacting protein EPI64, co 99.86
KOG3636 669 consensus Uncharacterized conserved protein, conta 99.7
KOG4436 948 consensus Predicted GTPase activator NB4S/EVI5 (co 99.53
KOG1648813 consensus Uncharacterized conserved protein, conta 99.37
KOG2801 559 consensus Probable Rab-GAPs [Intracellular traffic 98.7
PF149611296 BROMI: Broad-minded protein 97.04
KOG2224781 consensus Uncharacterized conserved protein, conta 85.51
>KOG4567 consensus GTPase-activating protein [General function prediction only] Back     alignment and domain information 
Probab=100.00  E-value=2.4e-47  Score=353.42  Aligned_cols=310  Identities=25%  Similarity=0.444  Sum_probs=258.1

Q ss_pred             HHHHhhccC-CCccHHHHHHHHHhCCCC--CCChHHHHHHhhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhccccC
Q 014498           45 RWHAAFSED-GHLDIAKVLRRIQRGGIH--PSIKGLVWEFLLGCYDPNSTFEERNQIRQQRRQQYAAWKTECQNIVPIIG  121 (423)
Q Consensus        45 ~W~~~l~~~-~~i~~~kll~~l~~~GIP--~~~R~~vW~~LLg~~~~~~~~~~~~~i~~~~~~~Y~~l~~~~~~~~~~~~  121 (423)
                      ..++.++.. ..+|..+ ++.++..|+|  +++|+.+|++|||++|++.+  .|...+.++|..|..+.++..   ..+|
T Consensus        11 ~~edvl~~~~~~id~ke-lr~~~~~g~p~~~~lR~~~WkllL~Yl~~er~--~w~s~La~~R~~Y~q~i~e~v---~epg   84 (370)
T KOG4567|consen   11 SIEDVLNPADDTIDLKE-LRKLCFYGVPDDASLRPLVWKLLLGYLPPERS--KWTSFLAKKRSLYKQFIEEIV---DEPG   84 (370)
T ss_pred             hHHHhhccccchhhHHH-HHHHhhcCCCCccchhHhHHHHHHhhcChhhh--hhHHHHHHHHHHHHHHHHHhc---cCcc
Confidence            444444443 3377776 7777788999  79999999999999999885  567889999999999988843   2222


Q ss_pred             CCcccccccccCCCCccCCCCccccCCCCCCCCccchHHHHHHHHHHhHHhhccccCCCCCcCCCChh------------
Q 014498          122 SGKFITAAIVTDDGQSLQDSNRDSLDQGWHVDGAISDKKVLQWMLGLHQIGLDVVRTDRSLVFYESET------------  189 (423)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~qI~~Dv~Rt~~~~~~f~~~~------------  189 (423)
                      ...  .....+..++..++|++.++.+.|        ....+..+.+.||++||.||.|+..+|+...            
T Consensus        85 ~~~--~~~~v~~~D~~~dhPls~~~~sdw--------n~ff~d~e~l~QIdrDvrr~~pdi~ff~~~~~~p~~~~~~~~~  154 (370)
T KOG4567|consen   85 KKD--NSKKVDSNDTDEDHPLSLGPTSDW--------NTFFKDCEVLLQIDRDVRRTHPDISFFQLASSYPCRQGMDSRR  154 (370)
T ss_pred             ccc--cccccccCcccccCCCCCCchhhH--------HHHhhhhHHHHHHHHHHHHhCcchHhhhhccccccccchhhHh
Confidence            211  111222333567789888877777        3455566789999999999999999886521            


Q ss_pred             ---------------hHHHHHHHHHHHHHhcCCCcccCChhhHHHHHHHhcC----------CHHHHHHHHHHHHHHhhh
Q 014498          190 ---------------NQAKLWDVLAIYSWVDNDIGYVQGMNDICSPMIVLLE----------NEADAFWCFEHTMRRLRE  244 (423)
Q Consensus       190 ---------------~~~~L~rIL~~y~~~np~igY~QGm~~iaa~ll~~~~----------~E~~aF~~f~~l~~~~~~  244 (423)
                                     ......|||.+|+..||.|||+||||+|+||+++++.          .|+|||+||+.||..+++
T Consensus       155 ~i~~~q~~~~n~~gl~~~~~erilfiyAKLNpGi~YVQGMNEIlaPiYYVfa~Dpd~e~~~~aEaDaFFCF~~LMseirD  234 (370)
T KOG4567|consen  155 RINASQEAGRNRLGLTRFAAERILFIYAKLNPGIGYVQGMNEILAPIYYVFANDPDEENRAYAEADAFFCFTQLMSEIRD  234 (370)
T ss_pred             hhhhhhHhhhcccchhhhHHHHHHHHHhhcCCcchHHhhhHHHhhhhheeeccCCchhhHHhhhhhHHHHHHHHHHHHHH
Confidence                           1334578999999999999999999999999999984          389999999999999999


Q ss_pred             cccCC--CChhhHHHHHHHHHHHHHHHCHHHHHHHHhCCCCccchHHHHHHHhhcccCChhhHHHHHHHHhccccCCCch
Q 014498          245 NFRTN--TGMIGVQSQLSTLSQIIRTIDPKLHQHLEDLDGGEYLFAFRMLMVLFRREFSFVDALYLWELMWAMEYNPNIF  322 (423)
Q Consensus       245 ~~~~~--~~~~~~~~~~~~~~~lL~~~dP~L~~hL~~~~i~~~~f~~~W~~tlF~~~l~~~~vlriWD~~~~~~~~~~~f  322 (423)
                      +|..+  ++.-|++..+..+..+|+.+|-+||.||++.+|.|+.|+++|+++|++.+||++++++|||.+|++...    
T Consensus       235 nf~k~LDdS~~GI~~~Msr~~~~lk~~D~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD~~r----  310 (370)
T KOG4567|consen  235 NFIKTLDDSVGGIHFLMSRLSELLKKHDEELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSDPQR----  310 (370)
T ss_pred             HHHHhccccccchHHHHHHHHHHHHHhhHHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcChhh----
Confidence            99764  455588888999999999999999999999999999999999999999999999999999999987543    


Q ss_pred             hhhcccCCCCCCcccchhHhhhhchhhhhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHhhhcCCCC
Q 014498          323 SLYESNSSTSDGRQVNDKQLKQCGKFERKNVKTGLPDKTSALSVFLVASVLETKNKKLLREAKGLDDVVKILADITGNLD  402 (423)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ail~~~r~~il~~~~~~~~il~~l~~l~~~~d  402 (423)
                                                             .+|++++|+|||...|+.||+  .||+.-+++|++-| ..|
T Consensus       311 ---------------------------------------fd~Ll~iCcsmlil~Re~il~--~DF~~nmkLLQ~yp-~td  348 (370)
T KOG4567|consen  311 ---------------------------------------FDFLLYICCSMLILVRERILE--GDFTVNMKLLQNYP-TTD  348 (370)
T ss_pred             ---------------------------------------hHHHHHHHHHHHHHHHHHHHh--cchHHHHHHHhcCC-CCC
Confidence                                                   358999999999999999999  69999999999999 889


Q ss_pred             HHHHHHHHHHHHHH
Q 014498          403 AKKACNEALKIQKK  416 (423)
Q Consensus       403 ~~~~l~~A~~l~~~  416 (423)
                      +..+++.|-.|..+
T Consensus       349 i~~~l~~A~~Lr~~  362 (370)
T KOG4567|consen  349 ISKMLAVADSLRDK  362 (370)
T ss_pred             HHHHHHHHHHHHhc
Confidence            99999999998743

>KOG2058 consensus Ypt/Rab GTPase activating protein [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1092 consensus Ypt/Rab-specific GTPase-activating protein GYP1 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2224 consensus Uncharacterized conserved protein, contains TBC domain [Signal transduction mechanisms; General function prediction only] Back     alignment and domain information
>smart00164 TBC Domain in Tre-2, BUB2p, and Cdc16p Back     alignment and domain information
>KOG2223 consensus Uncharacterized conserved protein, contains TBC domain [Signal transduction mechanisms; General function prediction only] Back     alignment and domain information
>KOG2197 consensus Ypt/Rab-specific GTPase-activating protein GYP7 and related proteins [Signal transduction mechanisms] Back     alignment and domain information
>COG5210 GTPase-activating protein [General function prediction only] Back     alignment and domain information
>PF00566 RabGAP-TBC: Rab-GTPase-TBC domain; InterPro: IPR000195 Identification of a TBC domain in GYP6_YEAST and GYP7_YEAST, which are GTPase activator proteins of yeast Ypt6 and Ypt7, imply that these domains are GTPase activator proteins of Rab-like small GTPases [] Back     alignment and domain information
>KOG1091 consensus Ypt/Rab-specific GTPase-activating protein GYP6 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1093 consensus Predicted protein kinase (contains TBC and RHOD domains) [General function prediction only] Back     alignment and domain information
>KOG2222 consensus Uncharacterized conserved protein, contains TBC, SH3 and RUN domains [Signal transduction mechanisms; General function prediction only] Back     alignment and domain information
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only] Back     alignment and domain information
>KOG2595 consensus Predicted GTPase activator protein [Signal transduction mechanisms] Back     alignment and domain information
>KOG4436 consensus Predicted GTPase activator NB4S/EVI5 (contains TBC domain)/Calmodulin-binding protein Pollux (contains PTB and TBC domains) [General function prediction only] Back     alignment and domain information
>KOG1102 consensus Rab6 GTPase activator GAPCenA and related TBC domain proteins [General function prediction only] Back     alignment and domain information
>KOG2221 consensus PDZ-domain interacting protein EPI64, contains TBC domain [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG3636 consensus Uncharacterized conserved protein, contains TBC and Rhodanese domains [General function prediction only] Back     alignment and domain information
>KOG4436 consensus Predicted GTPase activator NB4S/EVI5 (contains TBC domain)/Calmodulin-binding protein Pollux (contains PTB and TBC domains) [General function prediction only] Back     alignment and domain information
>KOG1648 consensus Uncharacterized conserved protein, contains RUN, BRK and TBC domains [General function prediction only] Back     alignment and domain information
>KOG2801 consensus Probable Rab-GAPs [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF14961 BROMI: Broad-minded protein Back     alignment and domain information
>KOG2224 consensus Uncharacterized conserved protein, contains TBC domain [Signal transduction mechanisms; General function prediction only] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query423
2g77_A410 Crystal Structure Of Gyp1 Tbc Domain In Complex Wit 3e-13
1fkm_A396 Crystal Structure Of The YptRAB-Gap Domain Of Gyp1p 2e-12
3dzx_A346 Crystal Structure Of The Rabgap Domain Of Human Tbc 8e-11
3qye_A331 Crystal Structure Of Human Tbc1d1 Rabgap Domain Len 1e-08
2qfz_A345 Crystal Structure Of Human Tbc1 Domain Family Membe 2e-08
3qyb_A301 X-Ray Crystal Structure Of Human Tbc1d4 (As160) Rab 7e-08
3hzj_A310 Crystal Structure Of The Rabgap Domain Of The Rabga 9e-05
2qq8_A334 Crystal Structure Of The Putative Rabgap Domain Of 4e-04
>pdb|2G77|A Chain A, Crystal Structure Of Gyp1 Tbc Domain In Complex With Rab33 Gtpase Bound To Gdp And Alf3 Length = 410 Back     alignment and structure 
Iteration: 1

 Score = 72.8 bits (177), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 44/170 (25%), Positives = 77/170 (45%), Gaps = 30/170 (17%)
Query: 169 HQIGLDVVRTDRSLVFYESETNQAKLWDVLAIYSWVDNDIGYVQGMNDICSPMI------ 222
           HQI +D+ RT+  +  Y+ ++ Q  L  +L +++      GYVQG+ND+ +P        
Sbjct: 108 HQIEIDIPRTNPHIPLYQFKSVQNSLQRILYLWAIRHPASGYVQGINDLVTPFFETFLTE 167
Query: 223 ----------------------VLLENEADAFWCFEHTMRRLRENFRTNTGMIGVQSQLS 260
                                  + + EAD FWC    + ++ +N+    G  G+  Q+ 
Sbjct: 168 YLPPSQIDDVKIKDPSTYMVDEQITDLEADTFWCLTKLLEQITDNYIH--GQPGILRQVK 225
Query: 261 TLSQIIRTIDPKLHQHLEDLDGGEYLFAFRMLMVLFRREFSFVDALYLWE 310
            LSQ+++ ID  L+ H ++       FAFR +  L  REF     + +W+
Sbjct: 226 NLSQLVKRIDADLYNHFQNEHVEFIQFAFRWMNCLLMREFQMGTVIRMWD 275
>pdb|1FKM|A Chain A, Crystal Structure Of The YptRAB-Gap Domain Of Gyp1p Length = 396 Back     alignment and structure
>pdb|3DZX|A Chain A, Crystal Structure Of The Rabgap Domain Of Human Tbc1d22b Length = 346 Back     alignment and structure
>pdb|3QYE|A Chain A, Crystal Structure Of Human Tbc1d1 Rabgap Domain Length = 331 Back     alignment and structure
>pdb|2QFZ|A Chain A, Crystal Structure Of Human Tbc1 Domain Family Member 22a Length = 345 Back     alignment and structure
>pdb|3QYB|A Chain A, X-Ray Crystal Structure Of Human Tbc1d4 (As160) Rabgap Domain Length = 301 Back     alignment and structure
>pdb|3HZJ|A Chain A, Crystal Structure Of The Rabgap Domain Of The Rabgap1l Protein Length = 310 Back     alignment and structure
>pdb|2QQ8|A Chain A, Crystal Structure Of The Putative Rabgap Domain Of Human Tbc1 Domain Family Member 14 Length = 334 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query423
1fkm_A396 Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein 8e-66
2qfz_A345 TBC1 domain family member 22A; RAB-GAP, GTPase act 3e-53
2qq8_A334 TBC1 domain family member 14; structural genomics 2e-26
3qwl_A294 TBC1 domain family member 7; RAB GTPase activation 2e-25
3hzj_A310 Rabgap1L, RAB GTPase-activating protein 1-like; st 2e-23
3qye_A331 TBC1 domain family member 1; rabgap, RAB, myocytes 1e-22
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-05
>1fkm_A Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein, vesicular trafficking, endocytosis, hydrolase, GTPase activation; 1.90A {Saccharomyces cerevisiae} SCOP: a.69.2.1 a.69.2.1 PDB: 2g77_A* Length = 396 Back     alignment and structure
 Score =  214 bits (547), Expect = 8e-66
 Identities = 63/317 (19%), Positives = 117/317 (36%), Gaps = 79/317 (24%)

Query: 39  KTLSAR--RWHAAFSEDGHLDIAKVLRRIQRGGIHPSIKGLVWEFLLGCYDPNSTFEERN 96
            ++  R  ++     +   ++    LR+I   GI    + +VW+ L+G    N+    + 
Sbjct: 2   NSIIQRISKFDNILKDKTIINQQD-LRQISWNGIPKIHRPVVWKLLIGYLPVNTK--RQE 58

Query: 97  QIRQQRRQQYAAWKTECQNIVPIIGSGKFITAAIVTDDGQSLQDSNRDSLDQGWHVDGAI 156
              Q++R++Y                                         +    D   
Sbjct: 59  GFLQRKRKEYRDSL-------------------------------------KHTFSDQHS 81

Query: 157 SDKKVLQWMLGLHQIGLDVVRTDRSLVFYESETNQAKLWDVLAIYSWVDNDIGYVQGMND 216
            D          HQI +D+ RT+  +  Y+ ++ Q  L  +L +++      GYVQG+ND
Sbjct: 82  RDIPTW------HQIEIDIPRTNPHIPLYQFKSVQNSLQRILYLWAIRHPASGYVQGIND 135

Query: 217 ICSPMIVLL----------------------------ENEADAFWCFEHTMRRLRENFRT 248
           + +P                                 + EAD FWC    + ++ +N+  
Sbjct: 136 LVTPFFETFLTEYLPPSQIDDVEIKDPSTYMVDEQITDLEADTFWCLTKLLEQITDNYIH 195

Query: 249 NTGMIGVQSQLSTLSQIIRTIDPKLHQHLEDLDGGEYLFAFRMLMVLFRREFSFVDALYL 308
             G  G+  Q+  LSQ+++ ID  L+ H ++       FAFR +  L  REF     + +
Sbjct: 196 --GQPGILRQVKNLSQLVKRIDADLYNHFQNEHVEFIQFAFRWMNCLLMREFQMGTVIRM 253

Query: 309 WELMWAMEYNPNIFSLY 325
           W+   + E +  + S Y
Sbjct: 254 WDTYLS-ETSQEVTSSY 269
>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator, structural genomics, structural genomics consortium, SGC, hydrolase activator; 2.10A {Homo sapiens} PDB: 3dzx_A Length = 345 Back     alignment and structure
>2qq8_A TBC1 domain family member 14; structural genomics consortium, RAB-GAP, SGC, GTPase activation, hydrolase activator; 2.00A {Homo sapiens} Length = 334 Back     alignment and structure
>3qwl_A TBC1 domain family member 7; RAB GTPase activation, structural genomics consortium, TBC D SGC, hydrolase activator; 1.90A {Homo sapiens} Length = 294 Back     alignment and structure
>3hzj_A Rabgap1L, RAB GTPase-activating protein 1-like; structural genomics consortium, SGC, alternative splicing, GTPase activation, phosphoprotein; 2.30A {Homo sapiens} Length = 310 Back     alignment and structure
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A Length = 331 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query423
2qfz_A345 TBC1 domain family member 22A; RAB-GAP, GTPase act 100.0
1fkm_A396 Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein 100.0
2qq8_A334 TBC1 domain family member 14; structural genomics 100.0
3qye_A331 TBC1 domain family member 1; rabgap, RAB, myocytes 100.0
4hl4_A292 TBC1 domain family member 20; rabgap, RAB1B, hydro 100.0
3hzj_A310 Rabgap1L, RAB GTPase-activating protein 1-like; st 100.0
3qwl_A294 TBC1 domain family member 7; RAB GTPase activation 100.0
>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator, structural genomics, structural genomics consortium, SGC, hydrolase activator; 2.10A {Homo sapiens} PDB: 3dzx_A Back     alignment and structure
Probab=100.00  E-value=2.5e-52  Score=413.88  Aligned_cols=287  Identities=22%  Similarity=0.424  Sum_probs=247.8

Q ss_pred             CHHHHHHhhccCCCccHHHHHHHHHhCCCCCCChHHHHHHhhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhccccC
Q 014498           42 SARRWHAAFSEDGHLDIAKVLRRIQRGGIHPSIKGLVWEFLLGCYDPNSTFEERNQIRQQRRQQYAAWKTECQNIVPIIG  121 (423)
Q Consensus        42 ~~~~W~~~l~~~~~i~~~kll~~l~~~GIP~~~R~~vW~~LLg~~~~~~~~~~~~~i~~~~~~~Y~~l~~~~~~~~~~~~  121 (423)
                      ..++|.+++.+. .+|.++ ++.++++|||+.+|+.||++|||++|.+.  ++|..++.++++.|.++++++.....   
T Consensus        25 r~~kw~~~l~~~-~~d~~~-Lr~l~~~GiP~~~R~~vW~~llg~~p~~~--~~~~~~l~~~~~~Y~~l~~~~~~~~~---   97 (345)
T 2qfz_A           25 RLDKFKQLLAGP-NTDLEE-LRRLSWSGIPKPVRPMTWKLLSGYLPANV--DRRPATLQRKQKEYFAFIEHYYDSRN---   97 (345)
T ss_dssp             HHHHHHHHHHCS-BCCHHH-HHHHHTTCCCGGGHHHHHHHHTTSSCSBG--GGHHHHHHHHHHHHHHHHHHC--------
T ss_pred             HHHHHHHHHcCC-CCCHHH-HHHHHHCCCCHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHHHHHHHHHHhhcCCC---
Confidence            457899999764 478887 56667899999999999999999998875  56778888999999999998642100   


Q ss_pred             CCcccccccccCCCCccCCCCccccCCCCCCCCccchHHHHHHHHHHhHHhhccccCCCCCcCCCChhhHHHHHHHHHHH
Q 014498          122 SGKFITAAIVTDDGQSLQDSNRDSLDQGWHVDGAISDKKVLQWMLGLHQIGLDVVRTDRSLVFYESETNQAKLWDVLAIY  201 (423)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~qI~~Dv~Rt~~~~~~f~~~~~~~~L~rIL~~y  201 (423)
                                        +      +               ...+..++|++||.||+|+ ++|+.+..++.|.|||.+|
T Consensus        98 ------------------~------~---------------~~~~~~~~I~~Dv~RT~p~-~~F~~~~~~~~L~rIL~~y  137 (345)
T 2qfz_A           98 ------------------D------E---------------VHQDTYRQIHIDIPRMSPE-ALILQPKVTEIFERILFIW  137 (345)
T ss_dssp             ------------------------------------------CHHHHHHHHHHGGGCSCH-HHHTSHHHHHHHHHHHHHH
T ss_pred             ------------------c------c---------------chHHHHHHHHHhCcccCCc-cccCCchHHHHHHHHHHHH
Confidence                              0      0               0014578999999999999 9999999999999999999


Q ss_pred             HHhcCCCcccCChhhHHHHHHHhcC------------------------CHHHHHHHHHHHHHHhhhcccCCCChhhHHH
Q 014498          202 SWVDNDIGYVQGMNDICSPMIVLLE------------------------NEADAFWCFEHTMRRLRENFRTNTGMIGVQS  257 (423)
Q Consensus       202 ~~~np~igY~QGm~~iaa~ll~~~~------------------------~E~~aF~~f~~l~~~~~~~~~~~~~~~~~~~  257 (423)
                      +.+||++|||||||+||++|++++.                        +|++|||||+.+|+++.++|.  .+.+|+..
T Consensus       138 a~~~p~vgY~QGm~~i~a~ll~v~~~~~~~~~~~~~~~~~~l~~~~~~~~E~daF~~f~~lm~~~~~~y~--~~~~~i~~  215 (345)
T 2qfz_A          138 AIRHPASGYVQGINDLVTPFFVVFICEYIEAEEVDTVDVSGVPAEVLCNIEADTYWCMSKLLDGIQDNYT--FAQPGIQM  215 (345)
T ss_dssp             HHHCTTTCCCTTHHHHHHHHHHHHHGGGCC-----CCCCTTSCHHHHHHHHHHHHHHHHHHHHTSGGGSS--TTCHHHHH
T ss_pred             HHHCCCCCcccChHHHHHHHHHHHHhhhcccccccccchhhhhhhhhhhHHHHHHHHHHHHHHccccccc--cCcHHHHH
Confidence            9999999999999999999998874                        289999999999999877765  34679999


Q ss_pred             HHHHHHHHHHHHCHHHHHHHHhCCCCccchHHHHHHHhhcccCChhhHHHHHHHHhccccCCCchhhhcccCCCCCCccc
Q 014498          258 QLSTLSQIIRTIDPKLHQHLEDLDGGEYLFAFRMLMVLFRREFSFVDALYLWELMWAMEYNPNIFSLYESNSSTSDGRQV  337 (423)
Q Consensus       258 ~~~~~~~lL~~~dP~L~~hL~~~~i~~~~f~~~W~~tlF~~~l~~~~vlriWD~~~~~~~~~~~f~~~~~~~~~~~~~~~  337 (423)
                      .+..++.+|+.++|+||+||.+.++++.+|+++||+|+|++++|+++++||||.+|++|...                  
T Consensus       216 ~~~~l~~ll~~~dP~L~~hL~~~~i~~~~f~~~W~~~lF~~~~p~~~~lrlWD~~l~~g~~~------------------  277 (345)
T 2qfz_A          216 KVKMLEELVSRIDEQVHRHLDQHEVRYLQFAFRWMNNLLMREVPLRCTIRLWDTYQSEPDGF------------------  277 (345)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHTTCCHHHHHHHHHHTTTTTTSCHHHHHHHHHHHTTSTTTT------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHHcccCCHHHHHHHHHHHHhCCCCh------------------
Confidence            99999999999999999999999999999999999999999999999999999999987542                  


Q ss_pred             chhHhhhhchhhhhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHhhhcCCC----CHHHHHHHHHHH
Q 014498          338 NDKQLKQCGKFERKNVKTGLPDKTSALSVFLVASVLETKNKKLLREAKGLDDVVKILADITGNL----DAKKACNEALKI  413 (423)
Q Consensus       338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ail~~~r~~il~~~~~~~~il~~l~~l~~~~----d~~~~l~~A~~l  413 (423)
                                              ..|++|+|+|+|...|++||. +.++++++.++++++...    |++.+++.|..+
T Consensus       278 ------------------------~~~~~~v~~AiL~~~~~~ll~-~~d~~~il~~L~~~p~~~~~~~di~~ll~~A~~l  332 (345)
T 2qfz_A          278 ------------------------SHFHLYVCAAFLVRWRKEILE-EKDFQELLLFLQNLPTAHWDDEDISLLLAEAYRL  332 (345)
T ss_dssp             ------------------------TTHHHHHHHHHHHHTHHHHHH-CCCHHHHHHHHTSCSCTTCCHHHHHHHHHHHHHH
T ss_pred             ------------------------hHHHHHHHHHHHHHHHHHHHh-hCCHHHHHHHHHcCCCcCCchhHHHHHHHHHHHH
Confidence                                    126889999999999999998 479999999999999653    899999999999


Q ss_pred             HHHHHhh
Q 014498          414 QKKYLSK  420 (423)
Q Consensus       414 ~~~~~~~  420 (423)
                      ..+|...
T Consensus       333 ~~~~~~~  339 (345)
T 2qfz_A          333 KFAFADA  339 (345)
T ss_dssp             HHHC---
T ss_pred             HHHHHhh
Confidence            9988653
>1fkm_A Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein, vesicular trafficking, endocytosis, hydrolase, GTPase activation; 1.90A {Saccharomyces cerevisiae} SCOP: a.69.2.1 a.69.2.1 PDB: 2g77_A* Back     alignment and structure
>2qq8_A TBC1 domain family member 14; structural genomics consortium, RAB-GAP, SGC, GTPase activation, hydrolase activator; 2.00A {Homo sapiens} Back     alignment and structure
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A Back     alignment and structure
>4hl4_A TBC1 domain family member 20; rabgap, RAB1B, hydrolase activator, catalytic domain, F GTPase-activating proteins, RAB GTP-binding protein, GTP HY; 2.20A {Homo sapiens} PDB: 4hlq_A* Back     alignment and structure
>3hzj_A Rabgap1L, RAB GTPase-activating protein 1-like; structural genomics consortium, SGC, alternative splicing, GTPase activation, phosphoprotein; 2.30A {Homo sapiens} Back     alignment and structure
>3qwl_A TBC1 domain family member 7; RAB GTPase activation, structural genomics consortium, TBC D SGC, hydrolase activator; 1.90A {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 423
d1fkma1194 a.69.2.1 (A:249-442) Ypt/Rab-GAP domain of gyp1p { 4e-22
d1fkma2188 a.69.2.1 (A:443-630) Ypt/Rab-GAP domain of gyp1p { 9e-18
>d1fkma1 a.69.2.1 (A:249-442) Ypt/Rab-GAP domain of gyp1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 194 Back     information, alignment and structure

class: All alpha proteins
fold: Left-handed superhelix
superfamily: Ypt/Rab-GAP domain of gyp1p
family: Ypt/Rab-GAP domain of gyp1p
domain: Ypt/Rab-GAP domain of gyp1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 91.1 bits (225), Expect = 4e-22
 Identities = 40/230 (17%), Positives = 79/230 (34%), Gaps = 74/230 (32%)

Query: 45  RWHAAFSEDGHLDIAKVLRRIQRGGIHPSIKGLVWEFLLGCYDPNSTFEERNQIRQQRRQ 104
           ++     +   ++    LR+I   GI    + +VW+ L+G    N+  +E    R+++  
Sbjct: 9   KFDNILKDKTIINQQD-LRQISWNGIPKIHRPVVWKLLIGYLPVNTKRQEGFLQRKRKEY 67

Query: 105 QYAAWKTECQNIVPIIGSGKFITAAIVTDDGQSLQDSNRDSLDQGWHVDGAISDKKVLQW 164
           + +   T                        Q  +D                        
Sbjct: 68  RDSLKHTFSD---------------------QHSRDIPT--------------------- 85

Query: 165 MLGLHQIGLDVVRTDRSLVFYESETNQAKLWDVLAIYSWVDNDIGYVQGMNDICSPMI-- 222
               HQI +D+ RT+  +  Y+ ++ Q  L  +L +++      GYVQG+ND+ +P    
Sbjct: 86  ---WHQIEIDIPRTNPHIPLYQFKSVQNSLQRILYLWAIRHPASGYVQGINDLVTPFFET 142

Query: 223 --------------------------VLLENEADAFWCFEHTMRRLRENF 246
                                      + + EAD FWC    + ++ +N+
Sbjct: 143 FLTEYLPPSQIDDVEIKDPSTYMVDEQITDLEADTFWCLTKLLEQITDNY 192
>d1fkma2 a.69.2.1 (A:443-630) Ypt/Rab-GAP domain of gyp1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 188 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query423
d1fkma1194 Ypt/Rab-GAP domain of gyp1p {Baker's yeast (Saccha 100.0
d1fkma2188 Ypt/Rab-GAP domain of gyp1p {Baker's yeast (Saccha 99.85
>d1fkma1 a.69.2.1 (A:249-442) Ypt/Rab-GAP domain of gyp1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
class: All alpha proteins
fold: Left-handed superhelix
superfamily: Ypt/Rab-GAP domain of gyp1p
family: Ypt/Rab-GAP domain of gyp1p
domain: Ypt/Rab-GAP domain of gyp1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3.5e-33  Score=252.16  Aligned_cols=158  Identities=24%  Similarity=0.479  Sum_probs=134.4

Q ss_pred             HHHHHhhccCCCccHHHHHHHHHhCCCCCCChHHHHHHhhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhccccCCC
Q 014498           44 RRWHAAFSEDGHLDIAKVLRRIQRGGIHPSIKGLVWEFLLGCYDPNSTFEERNQIRQQRRQQYAAWKTECQNIVPIIGSG  123 (423)
Q Consensus        44 ~~W~~~l~~~~~i~~~kll~~l~~~GIP~~~R~~vW~~LLg~~~~~~~~~~~~~i~~~~~~~Y~~l~~~~~~~~~~~~~~  123 (423)
                      ++|.+++.+.+.++.++ ++.++++|||+.+|+.||++|||++|.+.+  +|.....++++.|..+........      
T Consensus         8 ~~~~~~l~~~~~i~~~~-lr~l~~~Gip~~lR~~vW~~llg~~~~~~~--~~~~~~~~~~~~y~~~~~~~~~~~------   78 (194)
T d1fkma1           8 SKFDNILKDKTIINQQD-LRQISWNGIPKIHRPVVWKLLIGYLPVNTK--RQEGFLQRKRKEYRDSLKHTFSDQ------   78 (194)
T ss_dssp             HHHHHHHSSCSBCCHHH-HHHHHTTCCCGGGHHHHHHHHTTCSCSBGG--GHHHHHHHHHHHHHHHHHHTSSSS------
T ss_pred             HHHHHHhcccCCCCHHH-HHHHHHcCCChHHHHHHHHHHHhhcCCchh--hHHHHHHHHhhhhhhhhhhhhhcc------
Confidence            58999998877789987 566778999999999999999999998885  566777888999988877642100      


Q ss_pred             cccccccccCCCCccCCCCccccCCCCCCCCccchHHHHHHHHHHhHHhhccccCCCCCcCCCChhhHHHHHHHHHHHHH
Q 014498          124 KFITAAIVTDDGQSLQDSNRDSLDQGWHVDGAISDKKVLQWMLGLHQIGLDVVRTDRSLVFYESETNQAKLWDVLAIYSW  203 (423)
Q Consensus       124 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~qI~~Dv~Rt~~~~~~f~~~~~~~~L~rIL~~y~~  203 (423)
                                                     .      ....+..++|++||.||+|++++|..+.+++.|+|||.+|+.
T Consensus        79 -------------------------------~------~~~~~~~~~I~~Dv~RT~~~~~~f~~~~~~~~L~rIL~~ya~  121 (194)
T d1fkma1          79 -------------------------------H------SRDIPTWHQIEIDIPRTNPHIPLYQFKSVQNSLQRILYLWAI  121 (194)
T ss_dssp             -------------------------------C------STHHHHHHHHHHHGGGSSTTSGGGGSHHHHHHHHHHHHHHHH
T ss_pred             -------------------------------c------ccchHHHHHHHHHHHhcCCcccccccchhHHHHHHHHHHHHH
Confidence                                           0      001245789999999999999999999999999999999999


Q ss_pred             hcCCCcccCChhhHHHHHHHhcC----------------------------CHHHHHHHHHHHHHHhhhccc
Q 014498          204 VDNDIGYVQGMNDICSPMIVLLE----------------------------NEADAFWCFEHTMRRLRENFR  247 (423)
Q Consensus       204 ~np~igY~QGm~~iaa~ll~~~~----------------------------~E~~aF~~f~~l~~~~~~~~~  247 (423)
                      +||++|||||||+|||+|++++.                            .|++|||||+++|++++.+|.
T Consensus       122 ~np~~gY~QGmn~i~a~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ead~F~~f~~lm~~i~d~y~  193 (194)
T d1fkma1         122 RHPASGYVQGINDLVTPFFETFLTEYLPPSQIDDVEIKDPSTYMVDEQITDLEADTFWCLTKLLEQITDNYI  193 (194)
T ss_dssp             HCTTTCSCTTHHHHHHHHHHHHHGGGSCGGGGGGTTTSCGGGTCCHHHHHHHHHHHHHHHHHHHGGGGGGSS
T ss_pred             HCCCCCeeecchHHHHHHHHHHhhhhhhhhhhhhhhhcchhhhhhhhhhhhHHHHHHHHHHHHHHhhhccCC
Confidence            99999999999999999998762                            289999999999999887775
>d1fkma2 a.69.2.1 (A:443-630) Ypt/Rab-GAP domain of gyp1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure