Citrus Sinensis ID: 014521

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420---
MGCFIKFSSPAILFMFLSLLLIPTSAHVQVNEGGYISAVISKKGLDFFKNYLINKATSSIIPLELPDIEKSKKIPLIGKVHMALSNIIIYSVEIDSSYVETGDPDLLLAVSGATADCGMNWEYSYGSWLLPTISDSGAATVLVEGLEVGLTVSLKEQGGIVKVILVDCGSHVRDISIKVDGGASWLYQALFEAFEGKIKSAVESAVTKKISELITKLDSIFQSLPKQIPVSDIASMNTSFVRSPVLSDSSVEVEINGLFTAISGTSMLNYYHKGFESSASCSSPAKMIGIQLNENVFSSGALVYFNANRLHWIIDDIPEKSVLNTSGWRHIIPQLYTQYPNDGMNLYISVTSPPKIHVSEHDIGGTIDLDMTINVLDSSEVIPVACISLVSLIENLSAAHNIQPFTNFIHFLFDPLTCVYCAS
ccccccccHHHHHHHHHHHHHHHHcccccccccccEEEEEcHHHHHHHHHHHHHHHHHHcccccccccccccccccccEEEEEEEEEEEEEEEEcccccccccccEEEEEEcEEEEEEEEEEEEEcEEEccEEEccccEEEEEEcEEEEEEEEEEEcccEEEEEEEEEEEEEEcEEEEEEccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccEEEEEEccccccccEEEEEEEEEEEEcccccccccccccccccccccccccEEEEEEcHHHHHHHHHHHHHcccEEEEEccccccccccccHHHHcccccccccccccEEEEEEEccccEEEEEEccEEEEEEEEEEEEEEcccccccEEEEEEEEEEEEEEEEEEEcccEEEEEEEEEEEEEEEEcc
cccccccHHHHHHHHHHHHHHHHHHHHcccccccEEEEEEcHHHHHHHHHHHHHHHHHHHcccccccccccEEEcEEEEEEEEEEEEEEEEEEcccccEEccccEEEEEEEcEEEEEEEEEEEEEccEEEEEEEcccEEEEEEEEEEEEEEEEEEcccccEEEEEcccccEEcEEEEEEcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEccccEEEEEEcccccccccccEEEcEEEEEEccccccccccccccccccccccccccEEEEEEcHHHHHHHHHHHHHcccEEEEEccccccccccHHHHHHHHHHHHHHcccccEEEEEEEccccEEEEEcccEEEEEEEEEEEEEEccccccEEEEEEEEEEEEEEEEEEEcccEEEEEEEEEcccEEEEEcc
mgcfikfssPAILFMFLSLLliptsahvqvneGGYISAVISKKGLDFFKNYLInkatssiiplelpdiekskkiplIGKVHMALSNIIIYSVEidssyvetgdpdllLAVSgatadcgmnweysygswllptisdsgaATVLVEGLEVGLTVSLKEQGGIVKVILVDCgshvrdisikvDGGASWLYQALFEAFEGKIKSAVESAVTKKISELITKLDSIFqslpkqipvsdiasmntsfvrspvlsdssvEVEINGLFTAISGTSMLNYYHkgfessascsspakmigIQLNENVFSSGALVYFNANRLhwiiddipeksvlntsgwrhiipqlytqypndgmnlyisvtsppkihvsehdiggtidldmtinvldssevipVACISLVSLIENLsaahniqpftnfihflfdpltcvycas
MGCFIKFSSPAILFMFLSLLLIPTSAHVQVNEGGYISAVISKKGLDFFKNYLINKAtssiiplelpdieKSKKIPLIGKVHMALSNIIIYSVEIDSSYVETGDPDLLLAVSGATADCGMNWEYSYGSWLLPTISDSGAATVLVEGLEVGLTvslkeqggIVKVILVDCGSHVRDISIKVDGGASWLYQALFEAFEGKIKSAVESAVTKKISELITKLDSIFQSLPKQIPVSDIASMNTSFVRspvlsdssvEVEINGLFTAISGTSMLNYYHKGFESSASCSSPAKMIGIQLNENVFSSGALVYFNANRLHWIIDDIPEKSVLNTSGWRHIIPQLYTQYPNDGMNLYISVTSPPKIHVSEHDIGGTIDLDMTINVLDSSEVIPVACISLVSLIENLSAAHNIQPFTNFIHFLFDPLTCVYCAS
MGCFIKFSSPAILFMFLSLLLIPTSAHVQVNEGGYISAVISKKGLDFFKNYLINKATSSIIPLELPDIEKSKKIPLIGKVHMALSNIIIYSVEIDSSYVETGDPDLLLAVSGATADCGMNWEYSYGSWLLPTISDSGAAtvlveglevgltvslKEQGGIVKVILVDCGSHVRDISIKVDGGASWLYQALFEAFEGKIKSAVESAVTKKISELITKLDSIFQSLPKQIPVSDIASMNTSFVRSPVLSDSSVEVEINGLFTAISGTSMLNYYHKGFESSASCSSPAKMIGIQLNENVFSSGALVYFNANRLHWIIDDIPEKSVLNTSGWRHIIPQLYTQYPNDGMNLYISVTSPPKIHVSEHDIGGTIDLDMTINVLDSSEVIPVACISLVSLIENLSAAHNIQPFTNFIHFLFDPLTCVYCAS
**CFIKFSSPAILFMFLSLLLIPTSAHVQVNEGGYISAVISKKGLDFFKNYLINKATSSIIPLELPDIEKSKKIPLIGKVHMALSNIIIYSVEIDSSYVETGDPDLLLAVSGATADCGMNWEYSYGSWLLPTISDSGAATVLVEGLEVGLTVSLKEQGGIVKVILVDCGSHVRDISIKVDGGASWLYQALFEAFEGKIKSAVESAVTKKISELITKLDSIFQSLPKQIPVSDIASMNTSFVRSPVLSDSSVEVEINGLFTAISGTSMLNYYHKGFESSASCSSPAKMIGIQLNENVFSSGALVYFNANRLHWIIDDIPEKSVLNTSGWRHIIPQLYTQYPNDGMNLYISVTSPPKIHVSEHDIGGTIDLDMTINVLDSSEVIPVACISLVSLIENLSAAHNIQPFTNFIHFLFDPLTCVYC**
********SPAILFMFLSLLLIPTSAHVQVNEGGYISAVISKKGLDFFKNYLINKATSSIIPLELPDIEKSKKIPLIGKVHMALSNIIIYSVEIDSSYVETGDPDLLLAVSGATADCGMNWEYSYGSWLLPTISDSGAATVLVEGLEVGLTVSLKEQGGIVKVILVDCGSHVRDISIKVDGGASWLYQALFEAFEGKIKSAVESAVTKKISELITKLDSIFQSLPKQIPVSDIASMNTSFVRSPVLSDSSVEVEINGLFTAISGTSMLNY******************GIQLNENVFSSGALVYFNANRLHWIIDDIPEKSVLNTSGWRHIIPQLYTQYPNDGMNLYISVTSPPKIHVSEHDIGGTIDLDMTINVLDSSEVIPVACISLVSLIENLSAAHNIQPFTNFIHFLFDPLTCVYC**
MGCFIKFSSPAILFMFLSLLLIPTSAHVQVNEGGYISAVISKKGLDFFKNYLINKATSSIIPLELPDIEKSKKIPLIGKVHMALSNIIIYSVEIDSSYVETGDPDLLLAVSGATADCGMNWEYSYGSWLLPTISDSGAATVLVEGLEVGLTVSLKEQGGIVKVILVDCGSHVRDISIKVDGGASWLYQALFEAFEGKIKSAVESAVTKKISELITKLDSIFQSLPKQIPVSDIASMNTSFVRSPVLSDSSVEVEINGLFTAISGTSMLNYYHKGFESSASCSSPAKMIGIQLNENVFSSGALVYFNANRLHWIIDDIPEKSVLNTSGWRHIIPQLYTQYPNDGMNLYISVTSPPKIHVSEHDIGGTIDLDMTINVLDSSEVIPVACISLVSLIENLSAAHNIQPFTNFIHFLFDPLTCVYCAS
*GCFIKFSSPAILFMFLSLLLIPTSAHVQVNEGGYISAVISKKGLDFFKNYLINKATSSIIPLELPDIEKSKKIPLIGKVHMALSNIIIYSVEIDSSYVETGDPDLLLAVSGATADCGMNWEYSYGSWLLPTISDSGAATVLVEGLEVGLTVSLKEQGGIVKVILVDCGSHVRDISIKVDGGASWLYQALFEAFEGKIKSAVESAVTKKISELITKLDSIFQSLPKQIPVSDIASMNTSFVRSPVLSDSSVEVEINGLFTAISGTSMLNYYHKGFESSASCSSPAKMIGIQLNENVFSSGALVYFNANRLHWIIDDIPEKSVLNTSGWRHIIPQLYTQYPNDGMNLYISVTSPPKIHVSEHDIGGTIDLDMTINVLDSSEVIPVACISLVSLIENLSAAHNIQPFTNFIHFLFDPLTCVYCAS
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MGCFIKFSSPAILFMFLSLLLIPTSAHVQVNEGGYISAVISKKGLDFFKNYLINKATSSIIPLELPDIEKSKKIPLIGKVHMALSNIIIYSVEIDSSYVETGDPDLLLAVSGATADCGMNWEYSYGSWLLPTISDSGAATVLVEGLEVGLTVSLKEQGGIVKVILVDCGSHVRDISIKVDGGASWLYQALFEAFEGKIKSAVESAVTKKISELITKLDSIFQSLPKQIPVSDIASMNTSFVRSPVLSDSSVEVEINGLFTAISGTSMLNYYHKGFESSASCSSPAKMIGIQLNENVFSSGALVYFNANRLHWIIDDIPEKSVLNTSGWRHIIPQLYTQYPNDGMNLYISVTSPPKIHVSEHDIGGTIDLDMTINVLDSSEVIPVACISLVSLIENLSAAHNIQPFTNFIHFLFDPLTCVYCAS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query423 2.2.26 [Sep-21-2011]
Q9MAU5488 Putative BPI/LBP family p yes no 0.841 0.729 0.487 1e-102
Q8VYC2515 Putative BPI/LBP family p no no 0.886 0.728 0.417 9e-83
P17213487 Bactericidal permeability yes no 0.791 0.687 0.224 9e-18
P18428481 Lipopolysaccharide-bindin no no 0.827 0.727 0.244 2e-16
Q2TBI0481 Lipopolysaccharide-bindin yes no 0.777 0.683 0.218 2e-15
Q28739445 Bactericidal permeability no no 0.801 0.761 0.233 9e-15
Q6AXU0482 Bactericidal permeability yes no 0.827 0.726 0.214 2e-14
P17453482 Bactericidal permeability no no 0.832 0.730 0.234 3e-14
Q61805481 Lipopolysaccharide-bindin yes no 0.747 0.656 0.226 2e-13
P17454482 Lipopolysaccharide-bindin no no 0.846 0.742 0.204 9e-12
>sp|Q9MAU5|Y1049_ARATH Putative BPI/LBP family protein At1g04970 OS=Arabidopsis thaliana GN=At1g04970 PE=2 SV=1 Back     alignment and function desciption
 Score =  372 bits (954), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 174/357 (48%), Positives = 255/357 (71%), Gaps = 1/357 (0%)

Query: 35  YISAVISKKGLDFFKNYLINKATSSIIPLELPDIEKSKKIPLIGKVHMALSNIIIYSVEI 94
           + S ++S+ GLDF KN L+NKA +SIIPL++P IEKS KIP +G + + +SN+ IY +++
Sbjct: 28  FTSVLVSQNGLDFVKNLLVNKAIASIIPLQIPRIEKSMKIPFLGGIDVVVSNLTIYELDV 87

Query: 95  DSSYVETGDPDLLLAVSGATADCGMNWEYSYGSWLLP-TISDSGAATVLVEGLEVGLTVS 153
            SSYV+ G+  +++  SG T +  MNW YSY +WL P  ISD G A+V V+G+E+GL++ 
Sbjct: 88  ASSYVKLGETGVVIVASGTTCNLSMNWHYSYSTWLPPIEISDQGIASVQVQGMEIGLSLG 147

Query: 154 LKEQGGIVKVILVDCGSHVRDISIKVDGGASWLYQALFEAFEGKIKSAVESAVTKKISEL 213
           LK   G +K+ L +CG HV DI+I+++GGASW YQ +  AF+ +I S+VES + KK++E 
Sbjct: 148 LKSDEGGLKLSLSECGCHVEDITIELEGGASWFYQGMVNAFKDQIGSSVESTIAKKLTEG 207

Query: 214 ITKLDSIFQSLPKQIPVSDIASMNTSFVRSPVLSDSSVEVEINGLFTAISGTSMLNYYHK 273
           ++ LDS  QSLPK+IPV D A +N +F   P+L +SS+  EI+GLFT      +L  + K
Sbjct: 208 VSDLDSFLQSLPKEIPVDDNADLNVTFTSDPILRNSSITFEIDGLFTKGETNQVLKSFFK 267

Query: 274 GFESSASCSSPAKMIGIQLNENVFSSGALVYFNANRLHWIIDDIPEKSVLNTSGWRHIIP 333
              S   C   +KM+GI ++E VF+S A +Y+NA+ + W++D IPE+S+LNT+ WR IIP
Sbjct: 268 KSVSLVICPGNSKMLGISVDEAVFNSAAALYYNADFVQWVVDKIPEQSLLNTARWRFIIP 327

Query: 334 QLYTQYPNDGMNLYISVTSPPKIHVSEHDIGGTIDLDMTINVLDSSEVIPVACISLV 390
           QLY +YPN  MNL IS++SPP + +SE  +G  ++ D+ INVLD+++VIPVACISL+
Sbjct: 328 QLYKKYPNQDMNLNISLSSPPLVKISEQYVGANVNADLVINVLDANQVIPVACISLM 384

Arabidopsis thaliana (taxid: 3702)
>sp|Q8VYC2|Y2070_ARATH Putative BPI/LBP family protein At3g20270 OS=Arabidopsis thaliana GN=At3g20270 PE=2 SV=1 Back     alignment and function description
>sp|P17213|BPI_HUMAN Bactericidal permeability-increasing protein OS=Homo sapiens GN=BPI PE=1 SV=4 Back     alignment and function description
>sp|P18428|LBP_HUMAN Lipopolysaccharide-binding protein OS=Homo sapiens GN=LBP PE=1 SV=3 Back     alignment and function description
>sp|Q2TBI0|LBP_BOVIN Lipopolysaccharide-binding protein OS=Bos taurus GN=LBP PE=2 SV=1 Back     alignment and function description
>sp|Q28739|BPI_RABIT Bactericidal permeability-increasing protein (Fragment) OS=Oryctolagus cuniculus GN=BPI PE=2 SV=1 Back     alignment and function description
>sp|Q6AXU0|BPI_RAT Bactericidal permeability-increasing protein OS=Rattus norvegicus GN=Bpi PE=2 SV=1 Back     alignment and function description
>sp|P17453|BPI_BOVIN Bactericidal permeability-increasing protein OS=Bos taurus GN=BPI PE=2 SV=2 Back     alignment and function description
>sp|Q61805|LBP_MOUSE Lipopolysaccharide-binding protein OS=Mus musculus GN=Lbp PE=2 SV=2 Back     alignment and function description
>sp|P17454|LBP_RABIT Lipopolysaccharide-binding protein OS=Oryctolagus cuniculus GN=LBP PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query423
224056407470 predicted protein [Populus trichocarpa] 0.891 0.802 0.589 1e-123
255580770493 Lipopolysaccharide-binding protein precu 0.865 0.742 0.578 1e-117
224131712492 predicted protein [Populus trichocarpa] 0.865 0.743 0.525 1e-110
359494081501 PREDICTED: putative BPI/LBP family prote 0.917 0.774 0.510 1e-109
356552791491 PREDICTED: putative BPI/LBP family prote 0.898 0.773 0.520 1e-109
225447199498 PREDICTED: putative BPI/LBP family prote 0.898 0.763 0.516 1e-109
147854318 558 hypothetical protein VITISV_009101 [Viti 0.917 0.695 0.512 1e-108
356501578480 PREDICTED: putative BPI/LBP family prote 0.846 0.745 0.538 1e-106
359807236441 uncharacterized protein LOC100808142 pre 0.903 0.866 0.497 1e-104
356569730493 PREDICTED: putative BPI/LBP family prote 0.900 0.772 0.503 1e-102
>gi|224056407|ref|XP_002298841.1| predicted protein [Populus trichocarpa] gi|222846099|gb|EEE83646.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  446 bits (1148), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 224/380 (58%), Positives = 291/380 (76%), Gaps = 3/380 (0%)

Query: 12  ILFMFLSLLLIPTSA--HVQVNEGGYISAVISKKGLDFFKNYLINKATSSIIPLELPDIE 69
           + F+ + L+L P +A   +Q NE GYIS ++S KG+DF K+ LINKA S+IIPL+LPDIE
Sbjct: 5   LFFLVVCLVLAPAAAAHDLQSNEEGYISLLLSNKGVDFAKDVLINKAVSTIIPLQLPDIE 64

Query: 70  KSKKIPLIGKVHMALSNIIIYSVEIDSSYVETGDPDLLLAVSGATADCGMNWEYSYGSWL 129
           KS KIPLIGKVHM LSNI IYSV I SSYVETG+P L+L  SGATA   M W YSY +WL
Sbjct: 65  KSVKIPLIGKVHMILSNITIYSVNISSSYVETGNPGLVLVASGATASLSMKWAYSYSTWL 124

Query: 130 LPTISDSGAATVLVEGLEVGLTVSLKEQGGIVKVILVDCGSHVRDISIKVDGGASWLYQA 189
           +  ISDSG A+V V+G+EVGLTV+ KEQGG +++ L+DCG HV+DI+IK++GGASWLYQ 
Sbjct: 125 I-VISDSGDASVQVKGMEVGLTVAFKEQGGTLELSLLDCGCHVQDITIKLNGGASWLYQG 183

Query: 190 LFEAFEGKIKSAVESAVTKKISELITKLDSIFQSLPKQIPVSDIASMNTSFVRSPVLSDS 249
           + +AF+G I SAVE+A++KKI E I KLDS+ QS+PKQIP+  +A++N +FV SPVLS+S
Sbjct: 184 IVDAFQGSIGSAVENAISKKIKEEIVKLDSLLQSIPKQIPIDHVAALNATFVDSPVLSNS 243

Query: 250 SVEVEINGLFTAISGTSMLNYYHKGFESSASCSSPAKMIGIQLNENVFSSGALVYFNANR 309
            +E+EINGLFTA    ++   Y+KG +SS   + PAKMIGI L+E+VF++  LVY NA  
Sbjct: 244 FIELEINGLFTATDDFAVPRNYNKGKKSSLFYNCPAKMIGISLHEDVFNTAGLVYLNAGC 303

Query: 310 LHWIIDDIPEKSVLNTSGWRHIIPQLYTQYPNDGMNLYISVTSPPKIHVSEHDIGGTIDL 369
           +HWI+D     S LNT+ W++I PQLY QYPN  M+L IS TS P + ++++ I  TI L
Sbjct: 304 MHWIVDKSLNHSFLNTAAWKYIYPQLYLQYPNHDMSLNISATSSPAVKIAKNGINVTIYL 363

Query: 370 DMTINVLDSSEVIPVACISL 389
           D+T+NVLD S+VIPVACISL
Sbjct: 364 DVTVNVLDDSKVIPVACISL 383

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255580770|ref|XP_002531206.1| Lipopolysaccharide-binding protein precursor, putative [Ricinus communis] gi|223529208|gb|EEF31183.1| Lipopolysaccharide-binding protein precursor, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224131712|ref|XP_002321159.1| predicted protein [Populus trichocarpa] gi|222861932|gb|EEE99474.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|359494081|ref|XP_002277143.2| PREDICTED: putative BPI/LBP family protein At3g20270-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|356552791|ref|XP_003544746.1| PREDICTED: putative BPI/LBP family protein At3g20270-like [Glycine max] Back     alignment and taxonomy information
>gi|225447199|ref|XP_002272020.1| PREDICTED: putative BPI/LBP family protein At3g20270 [Vitis vinifera] gi|297739241|emb|CBI28892.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|147854318|emb|CAN83425.1| hypothetical protein VITISV_009101 [Vitis vinifera] Back     alignment and taxonomy information
>gi|356501578|ref|XP_003519601.1| PREDICTED: putative BPI/LBP family protein At3g20270-like [Glycine max] Back     alignment and taxonomy information
>gi|359807236|ref|NP_001241365.1| uncharacterized protein LOC100808142 precursor [Glycine max] gi|255641286|gb|ACU20920.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|356569730|ref|XP_003553049.1| PREDICTED: putative BPI/LBP family protein At3g20270-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query423
TAIR|locus:2010592488 AT1G04970 [Arabidopsis thalian 0.886 0.768 0.452 3.1e-90
TAIR|locus:2092334722 AT3G20270 [Arabidopsis thalian 0.895 0.524 0.416 1.1e-71
UNIPROTKB|I3L5U6481 LBP "Uncharacterized protein" 0.921 0.810 0.233 1.5e-21
UNIPROTKB|P18428481 LBP "Lipopolysaccharide-bindin 0.921 0.810 0.239 5.2e-19
UNIPROTKB|F1Q3I0483 F1Q3I0 "Uncharacterized protei 0.782 0.685 0.238 1.3e-18
UNIPROTKB|I3LFA0483 BPI "Uncharacterized protein" 0.877 0.768 0.239 2.1e-18
UNIPROTKB|F1MNN7481 LBP "Lipopolysaccharide-bindin 0.905 0.796 0.220 2.3e-17
UNIPROTKB|F1Q3J3485 BPI "Uncharacterized protein" 0.888 0.775 0.218 4.1e-17
UNIPROTKB|P17213487 BPI "Bactericidal permeability 0.799 0.694 0.222 4.1e-17
UNIPROTKB|Q2TBI0481 LBP "Lipopolysaccharide-bindin 0.905 0.796 0.217 1.2e-16
TAIR|locus:2010592 AT1G04970 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 900 (321.9 bits), Expect = 3.1e-90, P = 3.1e-90
 Identities = 172/380 (45%), Positives = 251/380 (66%)

Query:    13 LFMFL-SLLLIPTSAHVQVNEGGYISAVISKKGLDFFKNYLINKATSSIIPLELPDIEKS 71
             LF+ L S   +P+      +   + S ++S+ GLDF KN L+NKA +SIIPL++P IEKS
Sbjct:     8 LFLLLPSFFFLPSQTQ---STDSFTSVLVSQNGLDFVKNLLVNKAIASIIPLQIPRIEKS 64

Query:    72 KKIPLIGKVHMALSNIIIYSVEIDSSYVETGDPDLLLAVSGATADCGMNWEYSYGSWLLP 131
              KIP +G + + +SN+ IY +++ SSYV+ G+  +++  SG T +  MNW YSY +WL P
Sbjct:    65 MKIPFLGGIDVVVSNLTIYELDVASSYVKLGETGVVIVASGTTCNLSMNWHYSYSTWLPP 124

Query:   132 T-ISDSGAAXXXXXXXXXXXXXXXKEQGGIVKVILVDCGSHVRDISIKVDGGASWLYQAL 190
               ISD G A               K   G +K+ L +CG HV DI+I+++GGASW YQ +
Sbjct:   125 IEISDQGIASVQVQGMEIGLSLGLKSDEGGLKLSLSECGCHVEDITIELEGGASWFYQGM 184

Query:   191 FEAFEGKIKSAVESAVTKKISELITKLDSIFQSLPKQIPVSDIASMNTSFVRSPVLSDSS 250
               AF+ +I S+VES + KK++E ++ LDS  QSLPK+IPV D A +N +F   P+L +SS
Sbjct:   185 VNAFKDQIGSSVESTIAKKLTEGVSDLDSFLQSLPKEIPVDDNADLNVTFTSDPILRNSS 244

Query:   251 VEVEINGLFTAISGTSMLNYYHKGFESSASCSSPAKMIGIQLNENVFSSGALVYFNANRL 310
             +  EI+GLFT      +L  + K   S   C   +KM+GI ++E VF+S A +Y+NA+ +
Sbjct:   245 ITFEIDGLFTKGETNQVLKSFFKKSVSLVICPGNSKMLGISVDEAVFNSAAALYYNADFV 304

Query:   311 HWIIDDIPEKSVLNTSGWRHIIPQLYTQYPNDGMNLYISVTSPPKIHVSEHDIGGTIDLD 370
              W++D IPE+S+LNT+ WR IIPQLY +YPN  MNL IS++SPP + +SE  +G  ++ D
Sbjct:   305 QWVVDKIPEQSLLNTARWRFIIPQLYKKYPNQDMNLNISLSSPPLVKISEQYVGANVNAD 364

Query:   371 MTINVLDSSEVIPVACISLV 390
             + INVLD+++VIPVACISL+
Sbjct:   365 LVINVLDANQVIPVACISLM 384
GO:0005576 "extracellular region" evidence=ISM
GO:0008150 "biological_process" evidence=ND
GO:0008289 "lipid binding" evidence=IEA;ISS
GO:0005773 "vacuole" evidence=IDA
GO:0005774 "vacuolar membrane" evidence=IDA
TAIR|locus:2092334 AT3G20270 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|I3L5U6 LBP "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|P18428 LBP "Lipopolysaccharide-binding protein" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1Q3I0 F1Q3I0 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|I3LFA0 BPI "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|F1MNN7 LBP "Lipopolysaccharide-binding protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1Q3J3 BPI "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|P17213 BPI "Bactericidal permeability-increasing protein" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q2TBI0 LBP "Lipopolysaccharide-binding protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
gw1.I.4496.1
hypothetical protein (441 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query423
cd00025223 cd00025, BPI1, BPI/LBP/CETP N-terminal domain; Bac 1e-33
pfam01273163 pfam01273, LBP_BPI_CETP, LBP / BPI / CETP family, 9e-19
smart00328225 smart00328, BPI1, BPI/LBP/CETP N-terminal domain 3e-18
cd00026200 cd00026, BPI2, BPI/LBP/CETP C-terminal domain; Bac 9e-18
smart00329202 smart00329, BPI2, BPI/LBP/CETP C-terminal domain 4e-09
pfam02886238 pfam02886, LBP_BPI_CETP_C, LBP / BPI / CETP family 7e-07
cd00264208 cd00264, BPI, BPI/LBP/CETP domain; Bactericidal pe 3e-05
>gnl|CDD|237992 cd00025, BPI1, BPI/LBP/CETP N-terminal domain; Bactericidal permeability-increasing protein (BPI) / Lipopolysaccharide-binding protein (LBP) / Cholesteryl ester transfer protein (CETP) N-terminal domain; binds to and neutralizes lipopolysaccharides from the outer membrane of Gram-negative bacteria Back     alignment and domain information 
 Score =  125 bits (316), Expect = 1e-33
 Identities = 64/228 (28%), Positives = 104/228 (45%), Gaps = 9/228 (3%)

Query: 36  ISAVISKKGLDFFKNYLINKATSSIIPLELPDIEKSKKIPLIGKVHMALSNIIIYSVEID 95
             A +S KGL F K   +    + +  L++PDI  + KI L+GK  + LSN  I  +++ 
Sbjct: 2   AVARLSPKGLKFAKQQGLKVLQAELEKLQIPDILGAMKIKLLGKGRVGLSNKEIQELKLP 61

Query: 96  SSYVETGDPDLL-LAVSGATADCGMNWEYSYGSWLLPTISDSGAATVLVEGLEVGLTVSL 154
           SS ++  +   L L++S  +      W+Y+Y       I D G   + VEG+ +   + L
Sbjct: 62  SSSIKLVEVKGLDLSISNVSIGLSGVWKYNY-----RFILDGGNVELSVEGMNIQADLRL 116

Query: 155 K-EQGGIVKVILVDCGSHVRDISIKVDGGASWLYQALFEAFEGK-IKSAVESAVTKKISE 212
             +  G  K+ L DC S V  + + + G   WL +      E    K           + 
Sbjct: 117 GRDPSGRPKLSLSDCSSTVGSLRVHLGGSLGWLAKLFMNFIESLLKKVLKGQLCPVIDAS 176

Query: 213 LITKLDSIFQSLPKQIPVSDIASMNTSFVRSPVLSDSSVEVEINGLFT 260
           L++ L+S    LPK  PV   A ++ S    PVL+ S ++ +I G F 
Sbjct: 177 LVSMLES-LLQLPKLPPVDSNAGVDYSLTSPPVLTASYLDSDIKGTFQ 223

; Apolar pockets on the concave surface bind a molecule of phosphatidylcholine, primarily by interacting with their acyl chains; this suggests that the pockets may also bind the acyl chains of lipopolysaccharide. Length = 223
>gnl|CDD|216404 pfam01273, LBP_BPI_CETP, LBP / BPI / CETP family, N-terminal domain Back     alignment and domain information
>gnl|CDD|214622 smart00328, BPI1, BPI/LBP/CETP N-terminal domain Back     alignment and domain information
>gnl|CDD|237993 cd00026, BPI2, BPI/LBP/CETP C-terminal domain; Bactericidal permeability-increasing protein (BPI) / Lipopolysaccharide-binding protein (LBP) / Cholesteryl ester transfer protein (CETP) C-terminal domain; binds to and neutralizes lipopolysaccharides from the outer membrane of Gram-negative bacteria Back     alignment and domain information
>gnl|CDD|128624 smart00329, BPI2, BPI/LBP/CETP C-terminal domain Back     alignment and domain information
>gnl|CDD|202449 pfam02886, LBP_BPI_CETP_C, LBP / BPI / CETP family, C-terminal domain Back     alignment and domain information
>gnl|CDD|238164 cd00264, BPI, BPI/LBP/CETP domain; Bactericidal permeability-increasing protein (BPI) / Lipopolysaccharide-binding protein (LBP) / Cholesteryl ester transfer protein (CETP) domain; binds to and neutralizes lipopolysaccharides from the outer membrane of Gram-negative bacteria Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 423
KOG4160492 consensus BPI/LBP/CETP family protein [Defense mec 100.0
cd00025223 BPI1 BPI/LBP/CETP N-terminal domain; Bactericidal 100.0
smart00328225 BPI1 BPI/LBP/CETP N-terminal domain. Bactericidal 100.0
PF01273164 LBP_BPI_CETP: LBP / BPI / CETP family, N-terminal 99.96
PF02886238 LBP_BPI_CETP_C: LBP / BPI / CETP family, C-termina 99.95
smart00329202 BPI2 BPI/LBP/CETP C-terminal domain. Bactericidal 99.91
cd00264208 BPI BPI/LBP/CETP domain; Bactericidal permeability 99.91
cd00026200 BPI2 BPI/LBP/CETP C-terminal domain; Bactericidal 99.88
cd00264208 BPI BPI/LBP/CETP domain; Bactericidal permeability 98.96
PF06585248 JHBP: Haemolymph juvenile hormone binding protein 98.39
smart00700225 JHBP Juvenile hormone binding protein domains in i 98.31
PF14613164 DUF4449: Protein of unknown function (DUF4449) 92.28
>KOG4160 consensus BPI/LBP/CETP family protein [Defense mechanisms] Back     alignment and domain information 
Probab=100.00  E-value=4.1e-50  Score=414.66  Aligned_cols=369  Identities=26%  Similarity=0.400  Sum_probs=323.7

Q ss_pred             CCceEEEEechhHHHHHHHHHHHHHHhhcCCCCCCCceeeeeecceeeEEEEEeeEEEEEEEeCCceEEe-CCCeeEEEE
Q 014521           32 EGGYISAVISKKGLDFFKNYLINKATSSIIPLELPDIEKSKKIPLIGKVHMALSNIIIYSVEIDSSYVET-GDPDLLLAV  110 (423)
Q Consensus        32 ~~pGi~vrit~~gL~y~~~~~~~~l~~~l~~~~IPdi~g~~~~~~~G~v~~~ls~i~I~~~~~p~~~v~l-p~~gi~l~i  110 (423)
                      .+||+++|++++|++|+++.+...+++++.++++||+.++.+.+.+|++.|.++++++.++..+.+.+++ +..++.|++
T Consensus        26 ~~pg~~vri~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~g~~~~~~~~i~i~~~~~~s~~~~~~~~~~~~~~~  105 (492)
T KOG4160|consen   26 HNPGIVVRINQKALDYVSDEGALVLQAELLRLTIPDIEGSMKSSHIGGGRYTLSSIKILRFSVPSSQLSLVPQAGLSWSI  105 (492)
T ss_pred             cCCceEEEechhhHHHHhHHHHHHHHHhhccCCchhhhcccccceecceEEEecceeEEeccccccceeecCCceEEEEE
Confidence            6788999999999999999999999999999999999999998888999999999999999999999999 778999999


Q ss_pred             eCceEEEEEEEEEEEcccccceeecceEEEEEEecEEEEEEEEEE-e-cCCeEEEEEeeeeEEeceEEEEEECCchhhHH
Q 014521          111 SGATADCGMNWEYSYGSWLLPTISDSGAATVLVEGLEVGLTVSLK-E-QGGIVKVILVDCGSHVRDISIKVDGGASWLYQ  188 (423)
Q Consensus       111 ~~~~i~l~g~~~~~~~~~~~P~i~~sG~~~~~v~~~~i~~~~~l~-~-~~G~p~v~~~~C~~~i~~v~i~~~Gg~s~l~n  188 (423)
                      +|+.+.+.++|++ .. |+   ...+|.+++.++|+++.+.+.++ + .+|+|.++...|.+.++++++.+++-.+|+++
T Consensus       106 ~n~~~~~~~~~~~-~~-~~---~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~C~~~~~~l~~~~~~~~~~l~~  180 (492)
T KOG4160|consen  106 TNANISLSGRWKA-RT-RF---LALGGQVDASVKGMDIQINLSLGSDIGDGKPAVSDSSCSAAISDLHVQMGSLASWLIQ  180 (492)
T ss_pred             eeEEEEEeeeeEe-EE-EE---EecCCeeEEEeecceEEEeeeeeccCCCCcceeeeecceeEeeeeEeecCCCcHHHHH
Confidence            9999999999999 43 32   24459999999999999999998 6 88999999999999999999988855999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhcCCCccccccccccccccccCCeeccceeeeeeeEEEEe-ccCcc
Q 014521          189 ALFEAFEGKIKSAVESAVTKKISELI-TKLDSIFQSLPKQIPVSDIASMNTSFVRSPVLSDSSVEVEINGLFTA-ISGTS  266 (423)
Q Consensus       189 ~f~~~~~~~I~~~l~~~iC~~i~~~i-~~ln~~L~tlp~~~~i~~~~~idysl~~~P~it~~~i~~~l~G~~~~-~~~~~  266 (423)
                      .|.+.+++.||..++.++|+++++.+ .++|.+++++|+..++|+...|||+++++|.+|++++|++++|++++ .++..
T Consensus       181 ~~~~~~~~~i~~~~~~~~c~~~~~~~~~~~~~~l~~~~~~~~~d~~~~Idysl~~~P~~t~~~i~l~~~G~i~~~~~~~~  260 (492)
T KOG4160|consen  181 LFLNAISDNIRSVLESQICKKIRASVNGDLNSFLQTLPVSISVDSNAGIDYSLLGPPAITSSYIELDLKGEIFYSLGQVT  260 (492)
T ss_pred             HHHHHHHHHHHHHHhhhhcHHHHhhhchhhhhhhccCCcceecccccceeeEeccCCceecceEEEeeeeeEEeccCCCC
Confidence            99999999999999999999999999 59999999999999999999999999999999999999999999999 55544


Q ss_pred             ccCCCCCCCCCcc-CCCCCCceEEEEEchhhhHHHHHHHHhcCeeeEEe-cccCC-cc--ccccch--hhhhhhhHhhcC
Q 014521          267 MLNYYHKGFESSA-SCSSPAKMIGIQLNENVFSSGALVYFNANRLHWII-DDIPE-KS--VLNTSG--WRHIIPQLYTQY  339 (423)
Q Consensus       267 ~~P~~~~~~p~~~-~~~~~~~Ml~l~lSey~~NS~l~~~~~ag~L~~~i-~~iP~-~~--~LnTs~--~g~liP~L~~~y  339 (423)
                      ++ +   ..|... .++++++|+++|+|||++||++++||++|.+++.+ ++.|+ ++  .++|+.  +|+++|+|+++|
T Consensus       261 ~~-~---~~p~~~~~~~~~~~Mi~i~vSe~v~nSl~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~c~g~~lp~l~~~~  336 (492)
T KOG4160|consen  261 PP-F---PLPIVSPTPLSNSRMIYIYVSEYVFNSLLLHAYQAGLLKLLIDSDKPPVDSLKLLTTSGFCIGDLLPELAEQY  336 (492)
T ss_pred             Cc-c---cCCcccccCCCCCceEEEEEhhhhhhHHHHHHHHhCceeEEEcCcCCCcccccccccceeechhhhHHHHHHC
Confidence            33 2   233333 34447999999999999999999999999999999 44444 44  566664  677999999999


Q ss_pred             CCCCeEEEEEeCCCCEEEEEeCcEEEEEeeEEEEEEe-CCCceeeEEEEEEEeecc--------ccccccceeecceee
Q 014521          340 PNDGMNLYISVTSPPKIHVSEHDIGGTIDLDMTINVL-DSSEVIPVACISLVSLIE--------NLSAAHNIQPFTNFI  409 (423)
Q Consensus       340 Pn~~~~l~i~~~~~P~v~i~~~~~~~~~~~~i~~~v~-~~~~~~~~~~l~~~~~~~--------~~~~~~~~~~~~~~~  409 (423)
                      ||+++++++++.++|.|.+++++..+...+.+++++. |+.+..+++++++++++.        ++-|.++|++|....
T Consensus       337 Pn~~v~l~i~t~~~P~v~i~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~g~l~l~~~~~~~  415 (492)
T KOG4160|consen  337 PNRTVELEISTLSPPLVVISEQGVDVVLAGSVDVFVVPPSSTNQPLFTLTVDANVSATLSLSGNKLIGNLSLNKFKIEV  415 (492)
T ss_pred             CCCeeEEEEEeCCCcEEEEecCCeEEEEecceEEEEecCCcccceeEEEEEEEEEEEEEEEeeeeEEEEEEEeeeEEEE
Confidence            9999999999999999999999999999999988855 666777999876655544        235566666655443

>cd00025 BPI1 BPI/LBP/CETP N-terminal domain; Bactericidal permeability-increasing protein (BPI) / Lipopolysaccharide-binding protein (LBP) / Cholesteryl ester transfer protein (CETP) N-terminal domain; binds to and neutralizes lipopolysaccharides from the outer membrane of Gram-negative bacteria Back     alignment and domain information
>smart00328 BPI1 BPI/LBP/CETP N-terminal domain Back     alignment and domain information
>PF01273 LBP_BPI_CETP: LBP / BPI / CETP family, N-terminal domain; InterPro: IPR017942 This entry represents the N-terminal domain found in several lipid-binding serum glycoproteins Back     alignment and domain information
>PF02886 LBP_BPI_CETP_C: LBP / BPI / CETP family, C-terminal domain; InterPro: IPR001124 This entry represents the C-terminal domain found in several lipid-binding serum glycoproteins Back     alignment and domain information
>smart00329 BPI2 BPI/LBP/CETP C-terminal domain Back     alignment and domain information
>cd00264 BPI BPI/LBP/CETP domain; Bactericidal permeability-increasing protein (BPI) / Lipopolysaccharide-binding protein (LBP) / Cholesteryl ester transfer protein (CETP) domain; binds to and neutralizes lipopolysaccharides from the outer membrane of Gram-negative bacteria Back     alignment and domain information
>cd00026 BPI2 BPI/LBP/CETP C-terminal domain; Bactericidal permeability-increasing protein (BPI) / Lipopolysaccharide-binding protein (LBP) / Cholesteryl ester transfer protein (CETP) C-terminal domain; binds to and neutralizes lipopolysaccharides from the outer membrane of Gram-negative bacteria Back     alignment and domain information
>cd00264 BPI BPI/LBP/CETP domain; Bactericidal permeability-increasing protein (BPI) / Lipopolysaccharide-binding protein (LBP) / Cholesteryl ester transfer protein (CETP) domain; binds to and neutralizes lipopolysaccharides from the outer membrane of Gram-negative bacteria Back     alignment and domain information
>PF06585 JHBP: Haemolymph juvenile hormone binding protein (JHBP); InterPro: IPR010562 This family consists of several insect specific haemolymph juvenile hormone binding proteins (JHBP) Back     alignment and domain information
>smart00700 JHBP Juvenile hormone binding protein domains in insects Back     alignment and domain information
>PF14613 DUF4449: Protein of unknown function (DUF4449) Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query423
1bp1_A456 Crystal Structure Of Bpi, The Human Bactericidal Pe 6e-16
1ewf_A456 The 1.7 Angstrom Crystal Structure Of Bpi Length = 2e-15
>pdb|1BP1|A Chain A, Crystal Structure Of Bpi, The Human Bactericidal Permeability-Increasing Protein Length = 456 Back     alignment and structure 
Iteration: 1

 Score = 82.0 bits (201), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 73/336 (21%), Positives = 150/336 (44%), Gaps = 13/336 (3%)
Query: 30  VNEGGYISAVISKKGLDFFKNYLINKATSSIIPLELPDIEKSKKIPLIGKVHMALSNIII 89
           VN G  +   IS+KGLD+            +  +++PD   S KI  +GK H +  ++ I
Sbjct: 1   VNPG--VVVRISQKGLDYASQQGTAALQKELKRIKIPDYSDSFKIKHLGKGHYSFYSMDI 58
Query: 90  YSVEIDSSYVETGDPDLLLAVSGATADCGMNWEYSYGSWLLPTISDSGAAXXXXXXXXXX 149
              ++ SS +    P++ L  S + A+  ++ ++      L  +S +             
Sbjct: 59  REFQLPSSQISM-VPNVGLKFSISNANIKISGKWKAQKRFL-KMSGNFDLSIEGMSISAD 116
Query: 150 XXXXXKEQGGIVKVILVDCGSHVRDISIKV-DGGASWLYQALFEAFEGKIKSAVESAVTK 208
                    G   +    C SH+  + + +      WL Q   +  E  +++ + S V +
Sbjct: 117 LKLGSNPTSGKPTITCSSCSSHINSVHVHISKSKVGWLIQLFHKKIESALRNKMNSQVCE 176
Query: 209 KISELIT-KLDSIFQSLPKQIPVSDIASMNTSFVRSPVLSDSSVEVEINGLFTAISGTSM 267
           K++  ++ KL   FQ+LP    +  +A +N   V  P  +  +++V++ G F + +  + 
Sbjct: 177 KVTNSVSSKLQPYFQTLPVMTKIDSVAGINYGLVAPPATTAETLDVQMKGEFYSENHHNP 236
Query: 268 LNYYHKGFESSASCSSPAKMIGIQLNENVFSSGALVYFNANRLHWIIDD--IPEKS--VL 323
             +     E  A+     +M+ + L++  F++  LVY  A  L   + D  IP++S   L
Sbjct: 237 PPFAPPVMEFPAAHD---RMVYLGLSDYFFNTAGLVYQEAGVLKMTLRDDMIPKESKFRL 293
Query: 324 NTSGWRHIIPQLYTQYPNDGMNLYISVTSPPKIHVS 359
            T  +   +P++  ++PN  + +++S ++PP + V 
Sbjct: 294 TTKFFGTFLPEVAKKFPNMKIQIHVSASTPPHLSVQ 329
>pdb|1EWF|A Chain A, The 1.7 Angstrom Crystal Structure Of Bpi Length = 456 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query423
2obd_A476 Cholesteryl ester transfer protein; lipid transfer 4e-57
1ewf_A456 BPI, bactericidal/permeability-increasing protein; 7e-54
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-07
>2obd_A Cholesteryl ester transfer protein; lipid transfer protein, lipid transport; HET: NDG FU4 2OB PCW EPE 1PE PG4; 2.10A {Homo sapiens} Length = 476 Back     alignment and structure
 Score =  193 bits (492), Expect = 4e-57
 Identities = 66/362 (18%), Positives = 126/362 (34%), Gaps = 13/362 (3%)

Query: 36  ISAVISKKGLDFFKNYLINKATSSIIPLELPDIEKSKKIPLIGKVHMALSNIIIYSVEID 95
           I   I+K  L    +       ++      PDI   K + L+G+V   L NI I  + I 
Sbjct: 11  IVCRITKPALLVLNHETAKVIQTAFQRASYPDITGEKAMMLLGQVKYGLHNIQISHLSIA 70

Query: 96  SSYVETGDPD-LLLAVSGATADCGMNWEYSYGSWLLPTISDSGAATVLVEGLEVGLTVSL 154
           SS VE  +   + +++   +       +Y Y +     I  S    +    +++ +   L
Sbjct: 71  SSQVELVEAKSIDVSIQDVSVVFKGTLKYGYTTAWWLGIDQSIDFEI-DSAIDLQINTQL 129

Query: 155 KEQGGIVKVILVDCGSHVRDISIKVDGG--ASWLYQALFEAFEGKIKSAVESAVTKKISE 212
               G V+    DC      + + + G     W+ Q         +K  ++  + K+I+ 
Sbjct: 130 TADSGRVRTDAPDCYLSFHKLLLHLQGEREPGWIKQLFTNFISFTLKLVLKGQICKEINV 189

Query: 213 LITKLDSIFQSLPKQIPVSDIASMNTSFVRSPVLSDSSVEVEINGLFTAISGTSMLNYYH 272
           +   +    Q+    I       ++ S    PV++ S +E    G F     +  L    
Sbjct: 190 ISNIMADFVQTRAASILSDGDIGVDISLTGDPVITASYLESHHKGHFIYKDVSEDLPLP- 248

Query: 273 KGFESSASCSSPAKMIGIQLNENVFSSGALVYFNANRLHWIIDDIPEKSVLNTSGW---R 329
                S +    ++M+    +E VF S A V F   RL   +     K+VL T G+   +
Sbjct: 249 ---TFSPTLLGDSRMLYFWFSERVFHSLAKVAFQDGRLMLSLMGDEFKAVLETWGFNTNQ 305

Query: 330 HIIPQLYTQYPNDGMNLYISVTSPPKIHVSEHDIGGTIDLDMTINV-LDSSEVIPVACIS 388
            I  ++   +P+    + +     PKI      +     + +         +        
Sbjct: 306 EIFQEVVGGFPSQ-AQVTVHCLKMPKISCQNKGVVVDSSVMVKFLFPRPDQQHSVAYTFE 364

Query: 389 LV 390
             
Sbjct: 365 ED 366
>1ewf_A BPI, bactericidal/permeability-increasing protein; lipid-binding, lipopolysaccharide-binding, antibiotic; HET: PC1; 1.70A {Homo sapiens} SCOP: d.83.1.1 d.83.1.1 PDB: 1bp1_A* Length = 456 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query423
1ewf_A456 BPI, bactericidal/permeability-increasing protein; 100.0
2obd_A476 Cholesteryl ester transfer protein; lipid transfer 100.0
3uv1_A196 DER F 7 allergen; super-roll; 2.00A {Dermatophagoi 99.08
3e8t_A220 Takeout 1, takeout-like protein 1; transport prote 98.23
3h4z_A568 Maltose-binding periplasmic protein fused with Al 97.46
2rck_A225 JuvenIle hormone binding protein; hemolymph, JHBP- 97.06
2rqf_A227 HJHBP, hemolymph juvenIle hormone binding protein; 95.38
>1ewf_A BPI, bactericidal/permeability-increasing protein; lipid-binding, lipopolysaccharide-binding, antibiotic; HET: PC1; 1.70A {Homo sapiens} SCOP: d.83.1.1 d.83.1.1 PDB: 1bp1_A* Back     alignment and structure
Probab=100.00  E-value=2.2e-68  Score=549.78  Aligned_cols=371  Identities=20%  Similarity=0.353  Sum_probs=340.4

Q ss_pred             CCceEEEEechhHHHHHHHHHHHHHHhhcCCCCCCCceeeeeecceeeEEEEEeeEEEEEEEeCCceEEe-CCCeeEEEE
Q 014521           32 EGGYISAVISKKGLDFFKNYLINKATSSIIPLELPDIEKSKKIPLIGKVHMALSNIIIYSVEIDSSYVET-GDPDLLLAV  110 (423)
Q Consensus        32 ~~pGi~vrit~~gL~y~~~~~~~~l~~~l~~~~IPdi~g~~~~~~~G~v~~~ls~i~I~~~~~p~~~v~l-p~~gi~l~i  110 (423)
                      ++||+++|+|+|||+|+++++.+++++++++++|||++++++++++|+++|++++++|+++++|++++++ |++|+++++
T Consensus         1 ~~pGi~vrit~~gL~y~~~~~~~~l~~~l~~~~iPdi~~~~~~~~~g~~~~~ls~i~I~~~~~~~~~l~~~p~~gi~l~i   80 (456)
T 1ewf_A            1 VNPGVVVRISQKGLDYASQQGTAALQKELKRIKIPDYSDSFKIKHLGKGHYSFYSMDIREFQLPSSQISMVPNVGLKFSI   80 (456)
T ss_dssp             CCCSEEEEEEHHHHHHHHHHHHHHHHHHHTTCCCCCEEEECSCSSSSSCEEEEEEEEEEEEECCCEEEEEETTTEEEEEE
T ss_pred             CCCcEEEEECHHHHHHHHHHHHHHHHHHhhcCCCCCccCceeccccceEEEEEEEEEEEEEecCCceEEECCCCEEEEEE
Confidence            4799999999999999999999999999999999999999999988999999999999999999999999 999999999


Q ss_pred             eCceEEEEEEEEEEEcccccceeecceEEEEEEecEEEEEEEEEE-ec-CCeEEEEEeeeeEEeceEEEEEECC-chhhH
Q 014521          111 SGATADCGMNWEYSYGSWLLPTISDSGAATVLVEGLEVGLTVSLK-EQ-GGIVKVILVDCGSHVRDISIKVDGG-ASWLY  187 (423)
Q Consensus       111 ~~~~i~l~g~~~~~~~~~~~P~i~~sG~~~~~v~~~~i~~~~~l~-~~-~G~p~v~~~~C~~~i~~v~i~~~Gg-~s~l~  187 (423)
                      ++++++++|+|+|++  |+   ++++|.+++.++|+++++.++++ +. +|+|+++..+|++++++++++++|+ .+|++
T Consensus        81 ~~~~~~l~~~~~~~~--~~---i~~~G~~~~~v~~v~i~~~~~l~~~~~~G~~~v~~~~C~~~~~~~~i~~~g~~~~~l~  155 (456)
T 1ewf_A           81 SNANIKISGKWKAQK--RF---LKMSGNFDLSIEGMSISADLKLGSNPTSGKPTITCSSCSSHINSVHVHISKSKVGWLI  155 (456)
T ss_dssp             EEEEEEEEEEEEEEE--TT---EEEEEEEEEEEEEEEEEEEEEEEEETTTTEEEEEEEEEEEECCEEEEECSCGGGHHHH
T ss_pred             eCCcEEEEEEEEEEE--EE---EeeeeEEEEEEeeEEEEEEEEEeecCCCCceEEEEecCceEeceEEEEEeCCchHHHH
Confidence            999999999999998  43   79999999999999999999999 77 9999999999999999999999999 99999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhcCCCccccccccccccccccCCeeccceeeeeeeEEEEeccCcc
Q 014521          188 QALFEAFEGKIKSAVESAVTKKISELI-TKLDSIFQSLPKQIPVSDIASMNTSFVRSPVLSDSSVEVEINGLFTAISGTS  266 (423)
Q Consensus       188 n~f~~~~~~~I~~~l~~~iC~~i~~~i-~~ln~~L~tlp~~~~i~~~~~idysl~~~P~it~~~i~~~l~G~~~~~~~~~  266 (423)
                      |.|.+.+++.||+.+++++|++|++.+ +++|+.|+++|..+++|+.+.+||+++++|.+|+++++++++|++++.+++.
T Consensus       156 n~f~~~i~~~i~~~l~~~iC~~i~~~v~~~ln~~L~~lp~~~~id~~~~idysl~~~P~it~~~i~~~l~G~~~~~~~~~  235 (456)
T 1ewf_A          156 QLFHKKIESALRNKMNSQVCEKVTNSVSSELQPYFQTLPVMTKIDSVAGINYGLVAPPATTAETLDVQMKGEFYSENHHN  235 (456)
T ss_dssp             HHHHHHTHHHHHHHHHHHHHHHHHHHHHHTHHHHHTTSCSEEECSSSCEEECCBSSCCEECSSEEEEEECCEEECSSCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCceeecCceEEEEEEeecCCcccccEEEEEEEEEEEeCCCCC
Confidence            999999999999999999999999977 6799999999999999999999999999999999999999999999999888


Q ss_pred             ccCCCCCCCCCccCCCCCCceEEEEEchhhhHHHHHHHHhcCeeeEEe--cccCCcc--ccccchhhhhhhhHhhcCCCC
Q 014521          267 MLNYYHKGFESSASCSSPAKMIGIQLNENVFSSGALVYFNANRLHWII--DDIPEKS--VLNTSGWRHIIPQLYTQYPND  342 (423)
Q Consensus       267 ~~P~~~~~~p~~~~~~~~~~Ml~l~lSey~~NS~l~~~~~ag~L~~~i--~~iP~~~--~LnTs~~g~liP~L~~~yPn~  342 (423)
                      .+||.  +++.+ .+++.++|+++++|||++||++|+||++|+|++++  +++|+.+  +|||+|+|.++|||+++|||+
T Consensus       236 ~~p~~--p~~~~-~p~~~~~m~~~~ls~~~~nS~l~~~~~~g~l~~~it~~~ip~~~~~~L~T~~~~~~iP~l~~~yP~~  312 (456)
T 1ewf_A          236 PPPFA--PPVME-FPAAHDRMVYLGLSDYFFNTAGLVYQEAGVLKMTLRDDMIPKESKFRLTTKFFGTFLPEVAKKFPNM  312 (456)
T ss_dssp             CCSSC--CCCCC-CCCCCSSSEEEEEEHHHHHHHHHHHHHTTCSEEEEEGGGSCTTCSCCSBHHHHHTTSSSHHHHSTTC
T ss_pred             CCCCC--CCCcC-CCCCCCcEEEEEecHHHHHHHHHHHHhCCcceEEechhhCCCcCCCeeeehhhhhhchHHHHhCCCC
Confidence            77753  22333 24456899999999999999999999999999999  6899975  899999999999999999999


Q ss_pred             CeEEEEEeCCCCEEEEEeCcEEEEEeeEEEEEEe-CCCceeeEEEEEEEeecc--------ccccccceeecceeee
Q 014521          343 GMNLYISVTSPPKIHVSEHDIGGTIDLDMTINVL-DSSEVIPVACISLVSLIE--------NLSAAHNIQPFTNFIH  410 (423)
Q Consensus       343 ~~~l~i~~~~~P~v~i~~~~~~~~~~~~i~~~v~-~~~~~~~~~~l~~~~~~~--------~~~~~~~~~~~~~~~~  410 (423)
                      +++++++++++|.++++++++++++.+.+++++. |+++..++|+++++.+..        ++.|.++|.++..++.
T Consensus       313 ~l~l~i~~~~~P~v~~~~~~~~v~~~~~v~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~l~~~~l~l~  389 (456)
T 1ewf_A          313 KIQIHVSASTPPHLSVQPTGLTFYPAVDVQAFAVLPNSALASLFLIGMHTTGSMEVSAESNRLVGELKLDRLLLELK  389 (456)
T ss_dssp             BEEEEEECSSCCEEEEETTEEEEECEEEEEEEEECTTSCEEEEEEEEEECCEEEEEEECSSEEEEEEEECCCEEEEE
T ss_pred             eEEEEEEeCCCCEEEEecCCEEEEEEEEEEEEEECCCCceeeEEEEEEEEEEEEEEEEECCEEEEEEEecceEEEEE
Confidence            9999999999999999999999999999999976 777889999987654332        3355566666655443
>2obd_A Cholesteryl ester transfer protein; lipid transfer protein, lipid transport; HET: NDG FU4 2OB PCW EPE 1PE PG4; 2.10A {Homo sapiens} Back     alignment and structure
>3uv1_A DER F 7 allergen; super-roll; 2.00A {Dermatophagoides farinae} Back     alignment and structure
>3e8t_A Takeout 1, takeout-like protein 1; transport protein; HET: UQ8; 1.30A {Epiphyas postvittana} PDB: 3e8w_A* Back     alignment and structure
>3h4z_A Maltose-binding periplasmic protein fused with Al DERP7; MBP fusion, AHA1/BPI domain-like, super roll, sugar T transport, allergen; HET: GLC; 2.35A {Escherichia coli} Back     alignment and structure
>2rck_A JuvenIle hormone binding protein; hemolymph, JHBP-fold; HET: NAG; 2.44A {Galleria mellonella} Back     alignment and structure
>2rqf_A HJHBP, hemolymph juvenIle hormone binding protein; HET: JH3; NMR {Bombyx mori} PDB: 3a1z_A 3aos_A* 3aot_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 423
d1ewfa1217 d.83.1.1 (A:1-217) Bactericidal permeability-incre 9e-41
d1ewfa2239 d.83.1.1 (A:218-456) Bactericidal permeability-inc 2e-19
>d1ewfa1 d.83.1.1 (A:1-217) Bactericidal permeability-increasing protein, BPI {Human (Homo sapiens) [TaxId: 9606]} Length = 217 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Aha1/BPI domain-like
superfamily: Bactericidal permeability-increasing protein, BPI
family: Bactericidal permeability-increasing protein, BPI
domain: Bactericidal permeability-increasing protein, BPI
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  142 bits (359), Expect = 9e-41
 Identities = 49/223 (21%), Positives = 94/223 (42%), Gaps = 12/223 (5%)

Query: 30  VNEGGYISAVISKKGLDFFKNYLINKATSSIIPLELPDIEKSKKIPLIGKVHMALSNIII 89
           VN G  +   IS+KGLD+            +  +++PD   S KI  +GK H +  ++ I
Sbjct: 1   VNPG--VVVRISQKGLDYASQQGTAALQKELKRIKIPDYSDSFKIKHLGKGHYSFYSMDI 58

Query: 90  YSVEIDSSYVET-GDPDLLLAVSGATADCGMNWEYSYGSWLLPTISDSGAATVLVEGLEV 148
              ++ SS +    +  L  ++S A       W+          +  SG   + +EG+ +
Sbjct: 59  REFQLPSSQISMVPNVGLKFSISNANIKISGKWKAQK-----RFLKMSGNFDLSIEGMSI 113

Query: 149 GLTVSL--KEQGGIVKVILVDCGSHVRDISIKVDGG-ASWLYQALFEAFEGKIKSAVESA 205
              + L      G   +    C SH+  + + +      WL Q   +  E  +++ + S 
Sbjct: 114 SADLKLGSNPTSGKPTITCSSCSSHINSVHVHISKSKVGWLIQLFHKKIESALRNKMNSQ 173

Query: 206 VTKKISELIT-KLDSIFQSLPKQIPVSDIASMNTSFVRSPVLS 247
           V +K++  ++ +L   FQ+LP    +  +A +N   V  P  +
Sbjct: 174 VCEKVTNSVSSELQPYFQTLPVMTKIDSVAGINYGLVAPPATT 216
>d1ewfa2 d.83.1.1 (A:218-456) Bactericidal permeability-increasing protein, BPI {Human (Homo sapiens) [TaxId: 9606]} Length = 239 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query423
d1ewfa1217 Bactericidal permeability-increasing protein, BPI 100.0
d1ewfa2239 Bactericidal permeability-increasing protein, BPI 99.95
>d1ewfa1 d.83.1.1 (A:1-217) Bactericidal permeability-increasing protein, BPI {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Aha1/BPI domain-like
superfamily: Bactericidal permeability-increasing protein, BPI
family: Bactericidal permeability-increasing protein, BPI
domain: Bactericidal permeability-increasing protein, BPI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.5e-47  Score=354.29  Aligned_cols=211  Identities=22%  Similarity=0.412  Sum_probs=203.6

Q ss_pred             CceEEEEechhHHHHHHHHHHHHHHhhcCCCCCCCceeeeeecceeeEEEEEeeEEEEEEEeCCceEEe-CCCeeEEEEe
Q 014521           33 GGYISAVISKKGLDFFKNYLINKATSSIIPLELPDIEKSKKIPLIGKVHMALSNIIIYSVEIDSSYVET-GDPDLLLAVS  111 (423)
Q Consensus        33 ~pGi~vrit~~gL~y~~~~~~~~l~~~l~~~~IPdi~g~~~~~~~G~v~~~ls~i~I~~~~~p~~~v~l-p~~gi~l~i~  111 (423)
                      |||+++|+|+|||||+++++.+++++++.++++||++++++++.+|+++|+++|++|+++++|++++++ |++|++|.++
T Consensus         2 nPGi~vrit~kgL~y~~~~~~~~l~~~l~~i~iPdi~~~~~i~~~G~v~y~ls~i~I~~~~~~~s~l~~~p~~gi~~~is   81 (217)
T d1ewfa1           2 NPGVVVRISQKGLDYASQQGTAALQKELKRIKIPDYSDSFKIKHLGKGHYSFYSMDIREFQLPSSQISMVPNVGLKFSIS   81 (217)
T ss_dssp             CCSEEEEEEHHHHHHHHHHHHHHHHHHHTTCCCCCEEEECSCSSSSSCEEEEEEEEEEEEECCCEEEEEETTTEEEEEEE
T ss_pred             CCcEEEEECHHHHHHHHHHHHHHHHHHhhcCCCCCccCcccccccceEEEEEEeeEEEEEecCCceeEecCCCeEEEEEe
Confidence            899999999999999999999999999999999999999999989999999999999999999999999 9999999999


Q ss_pred             CceEEEEEEEEEEEcccccceeecceEEEEEEecEEEEEEEEEE-e-cCCeEEEEEeeeeEEeceEEEEEECC-chhhHH
Q 014521          112 GATADCGMNWEYSYGSWLLPTISDSGAATVLVEGLEVGLTVSLK-E-QGGIVKVILVDCGSHVRDISIKVDGG-ASWLYQ  188 (423)
Q Consensus       112 ~~~i~l~g~~~~~~~~~~~P~i~~sG~~~~~v~~~~i~~~~~l~-~-~~G~p~v~~~~C~~~i~~v~i~~~Gg-~s~l~n  188 (423)
                      +++++++|+|+|+++   +  ++++|+++++++++++++.++++ + .+|+|+++..+|++++++++++++|| .+|+||
T Consensus        82 ~~~~~l~g~w~~~~~---~--i~~~G~~~~~v~~~~i~~~~~l~~d~~~G~~~v~~~~C~~~i~~v~i~~~gg~~swl~n  156 (217)
T d1ewfa1          82 NANIKISGKWKAQKR---F--LKMSGNFDLSIEGMSISADLKLGSNPTSGKPTITCSSCSSHINSVHVHISKSKVGWLIQ  156 (217)
T ss_dssp             EEEEEEEEEEEEEET---T--EEEEEEEEEEEEEEEEEEEEEEEEETTTTEEEEEEEEEEEECCEEEEECSCGGGHHHHH
T ss_pred             cCeEEEEEEEEEEEE---E--EEEeeEEEEEEEEEEEEEEEEEEeeCCCCcEEEEEccCceEeeeEEEEECCCchHHHHH
Confidence            999999999999974   3  78999999999999999999998 6 57999999999999999999999987 899999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhcCCCccccccccccccccccCCeecc
Q 014521          189 ALFEAFEGKIKSAVESAVTKKISELI-TKLDSIFQSLPKQIPVSDIASMNTSFVRSPVLSD  248 (423)
Q Consensus       189 ~f~~~~~~~I~~~l~~~iC~~i~~~i-~~ln~~L~tlp~~~~i~~~~~idysl~~~P~it~  248 (423)
                      +|.+.+++.||+.+++++|++|++.+ +++|+.|+++|+.+|+|+.+.+||+|+++|.+|+
T Consensus       157 ~f~~~i~~~ir~~l~~~iC~~i~~~i~~~ln~~L~~lp~~~~id~~~~idysl~~~P~~ts  217 (217)
T d1ewfa1         157 LFHKKIESALRNKMNSQVCEKVTNSVSSELQPYFQTLPVMTKIDSVAGINYGLVAPPATTA  217 (217)
T ss_dssp             HHHHHTHHHHHHHHHHHHHHHHHHHHHHTHHHHHTTSCSEEECSSSCEEECCBSSCCEECS
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCeeeecCCceEEEEEeeCCCccCC
Confidence            99999999999999999999999999 6899999999999999999999999999999984
>d1ewfa2 d.83.1.1 (A:218-456) Bactericidal permeability-increasing protein, BPI {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure