Citrus Sinensis ID: 014537

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420---
MATFLSCVFILFFLCFYVVSPIEAQTGGFSVELIHRDSPKSPFYNSSETPYQRLRDALTRSLNRLNHFNQNSSISSSKASQADIIPNNANYLIRISIGTPPTERLAVADTGSDLIWTQCEPCPPSQCYMQDSPLFDPKMSSTYKSLPCSSSQCASLNQKSCSGVNCQYSVSYGDGSFSNGNLATETVTLGSTTGQAVALPGITFGCGTNNGGLFNSKTTGIVGLGGGDISLISQMRTTIAGKFSYCLVPVSSTKINFGTNGIVSGPGVVSTPLTKAKTFYVLTIDAISVGNQRLGVSTPDIVIDSGTTLTFLPQGYNSNLLSVMSSMIEAQPVADPTGSLELCYSFNSLSQVPEVTIHFRGADVKLSRSNFFVKVSEDIVCSVFKGITNSVPIYGNIMQTNFLVGYDIEQQTVSFKPTDCTKQ
ccHHHHHHHHHHHHHHHHccccccccccEEEEEEcccccccccccccccHHHHHHHHHHHHHHHHHHccccccccccccccccccccccEEEEEEEEcccccEEEEEEEcccccEEEcccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEccccEEEEEEEEEEEEEccccccccccccEEEEEEccccccccccccEEEEccccccHHHHHHcccccccEEEEccccccccEEcccccccccccEEEEccccccccEEEEEEEEEEccEEEccccccEEEEcccccccccHHHHHHHHHHHHHHHcccccccccccccccEEcccccccccEEEEEcccEEEEccccEEEEEcccEEEEEEEcccccccEEEEEEEEEEEEEEEccccEEEEEccccccc
ccHHHHHHHHHHHHHHHHHHHHHHccccEEEEEEEcccccccccccccHHHHHHHHHHHHHHHHHHHccccccccccccccccHcccccHEEEEEEEccccccEEEEEEccccccEccccccccHHHHHHHcccccccccccEEEcccccHHHHHHccccccccccEEEEEEccccccccEEEEEEEEEcccccccEEEcccEEEEEccccccEEcccccHEcccccHHHHHHHcccccccEEEEEEEcccccEEEEccccccccccEEEEEEEEEEEEEEEEEcEEEEccEEEEEcccEEEEEccccEEEccHHHHHHHHHHHHHHHHHHcccccccccEEEEEcccccccccEEEEEccEEEcccccHEEEEEcccEEEEEEccccccEEEEEHHHHccEEEEEEcccccEEEEccccccc
MATFLSCVFILFFLCFYvvspieaqtggfsvelihrdspkspfynssetpYQRLRDALTRSLNRLnhfnqnssissskasqadiipnnanYLIRIsigtppterlavadtgsdliwtqcepcppsqcymqdsplfdpkmsstykslpcsssqcaslnqkscsgvncqysvsygdgsfsngnlATETVTlgsttgqavalpgitfgcgtnngglfnskttgivglgggdISLISQMRTTIAgkfsyclvpvsstkinfgtngivsgpgvvstpltkakTFYVLTIDAISvgnqrlgvstpdividsgttltflpqgynsNLLSVMSSMieaqpvadptgslelcysfnslsqvpevtihfrgadvklsrsnffvKVSEDIVCSVFKgitnsvpiygnimqtnflvgydieqqtvsfkptdctkq
MATFLSCVFILFFLCFYVVSPIEAQTGGFSVELIHRDspkspfynssetpYQRLRDALTRSLNRLNHFnqnssissskasqadIIPNNANYLIRISIGTPPTERLAVADTGSDLIWTQCEPCPPSQCYMQDSPLFDPKMSSTYKSLPCSSSQCASLNQKSCSGVNCQYSVSYGDGSFSNGNLATETVTLGSTTGQAVALPGITFGCGTNNGGLFNSKTTGIVGLGGGDISLISQMRTTIAGKFSYCLVPVSSTKinfgtngivsgpgvvstplTKAKTFYVLTIDAISVGNQRLGVSTPDIVIDSGTTLTFLPQGYNSNLLSVMSSMIEAQPVADPTGSLELCYSFNSLSQVPEVTIHFRGADVKLSRSNFFVKVSEDIVCSVFKGITNSVPIYGNIMQTNFLVGYDIEQQtvsfkptdctkq
MATFLSCVFILFFLCFYVVSPIEAQTGGFSVELIHRDSPKSPFYNSSETPYQRLRDALTRSLNRLNHFNQNssissskasQADIIPNNANYLIRISIGTPPTERLAVADTGSDLIWTQCEPCPPSQCYMQDSPLFDPKMSSTYKSLPCSSSQCASLNQKSCSGVNCQYSVSYGDGSFSNGNLATETVTLGSTTGQAVALPGITFGCGTNNGGLFNSKTTGIVGLGGGDISLISQMRTTIAGKFSYCLVPVSSTKINFGTNGIVSGPGVVSTPLTKAKTFYVLTIDAISVGNQRLGVSTPDIVIDSGTTLTFLPQGYNSNLLSVMSSMIEAQPVADPTGSLELCYSFNSLSQVPEVTIHFRGADVKLSRSNFFVKVSEDIVCSVFKGITNSVPIYGNIMQTNFLVGYDIEQQTVSFKPTDCTKQ
**TFLSCVFILFFLCFYVVSPIEAQTGGFSVELIH************************************************IIPNNANYLIRISIGTPPTERLAVADTGSDLIWTQCEPCPPSQCYM******************************SCSGVNCQYSVSYGDGSFSNGNLATETVTLGSTTGQAVALPGITFGCGTNNGGLFNSKTTGIVGLGGGDISLISQMRTTIAGKFSYCLVPVSSTKINFGTNGIVSGPGVVSTPLTKAKTFYVLTIDAISVGNQRLGVSTPDIVIDSGTTLTFLPQGYNSNLLSVMSSMIEAQPVADPTGSLELCYSFNSLSQVPEVTIHFRGADVKLSRSNFFVKVSEDIVCSVFKGITNSVPIYGNIMQTNFLVGYDIEQQTV**********
**TFLSCVFILFFLCFYVVSPI*****GFSVELIHRD*************************************************NNANYLIRISIGTPPTERLAVADTGSDLIWTQCEPCPPSQCYMQDSPLFDPKMSSTYKSLPCSSSQCA*********VNCQYSVSYGDGSFSNGNLATETVTLGSTTGQAVALPGITFGCGTNNGGLFNSKTTGIVGLGGGDISLISQMRTTIAGKFSYCLVPVSSTKINFG***IVSGPGVVSTPLTKAKTFYVLTIDAISVGNQRLGVSTPDIVIDSGTTLTFLPQGYNSNLLSVMSS**********TGSLELCYSFNSLSQVPEVTIHFRGADVKLSRSNFFVKVSEDIVCSVFKGITNSVPIYGNIMQTNFLVGYDIEQQTVSFKPTDC***
MATFLSCVFILFFLCFYVVSPIEAQTGGFSVELIHRDSPKSPFYNSSETPYQRLRDALTRSLNRLNHFNQN*********QADIIPNNANYLIRISIGTPPTERLAVADTGSDLIWTQCEPCPPSQCYMQDSPLFDPKMSS******************SCSGVNCQYSVSYGDGSFSNGNLATETVTLGSTTGQAVALPGITFGCGTNNGGLFNSKTTGIVGLGGGDISLISQMRTTIAGKFSYCLVPVSSTKINFGTNGIVSGPGVVSTPLTKAKTFYVLTIDAISVGNQRLGVSTPDIVIDSGTTLTFLPQGYNSNLLSVMSSMIEAQPVADPTGSLELCYSFNSLSQVPEVTIHFRGADVKLSRSNFFVKVSEDIVCSVFKGITNSVPIYGNIMQTNFLVGYDIEQQTVSF********
*ATFLSCVFILFFLCFYVVSPIEAQTGGFSVELIHRDSPKSPFYNSSETPYQRLRDALTRSLNRLNHFNQNSSISSSKASQADIIPNNANYLIRISIGTPPTERLAVADTGSDLIWTQCEPCPPSQCYMQDSPLFDPKMSSTYKSLPCSSSQCASLNQKSCSGVNCQYSVSYGDGSFSNGNLATETVTLGSTTGQAVALPGITFGCGTNNGGLFNSKTTGIVGLGGGDISLISQMRTTIAGKFSYCLVPVSSTKINFGTNGIVSGPGVVSTPLTKAKTFYVLTIDAISVGNQRLGVSTPDIVIDSGTTLTFLPQGYNSNLLSVMSSMIEAQPVADPTGSLELCYSFNSLSQVPEVTIHFRGADVKLSRSNFFVKVSEDIVCSVFKGITNSVPIYGNIMQTNFLVGYDIEQQTVSFKPTDC***
iHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MATFLSCVFILFFLCFYVVSPIEAQTGGFSVELIHRDSPKSPFYNSSETPYQRLRDALTRSLNRLNHFNQNSSISSSKASQADIIPNNANYLIRISIGTPPTERLAVADTGSDLIWTQCEPCPPSQCYMQDSPLFDPKMSSTYKSLPCSSSQCASLNQKSCSGVNCQYSVSYGDGSFSNGNLATETVTLGSTTGQAVALPGITFGCGTNNGGLFNSKTTGIVGLGGGDISLISQMRTTIAGKFSYCLVPVSSTKINFGTNGIVSGPGVVSTPLTKAKTFYVLTIDAISVGNQRLGVSTPDIVIDSGTTLTFLPQGYNSNLLSVMSSMIEAQPVADPTGSLELCYSFNSLSQVPEVTIHFRGADVKLSRSNFFVKVSEDIVCSVFKGITNSVPIYGNIMQTNFLVGYDIEQQTVSFKPTDCTKQ
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query423 2.2.26 [Sep-21-2011]
Q6XBF8437 Aspartic proteinase CDR1 yes no 0.919 0.890 0.552 1e-112
Q3EBM5447 Probable aspartic proteas no no 0.964 0.912 0.464 2e-91
Q766C3437 Aspartic proteinase nepen N/A no 0.898 0.869 0.363 4e-65
Q766C2438 Aspartic proteinase nepen N/A no 0.886 0.856 0.341 8e-60
Q9LS40500 Protein ASPARTIC PROTEASE no no 0.841 0.712 0.346 1e-46
Q9LHE3470 Protein ASPARTIC PROTEASE no no 0.898 0.808 0.306 2e-40
Q9S9K4475 Aspartic proteinase-like no no 0.829 0.738 0.281 2e-31
Q9LZL3453 Aspartic proteinase PCS1 no no 0.711 0.664 0.272 7e-21
Q9LX20528 Aspartic proteinase-like no no 0.947 0.759 0.265 5e-20
P07267405 Saccharopepsin OS=Sacchar yes no 0.609 0.637 0.224 1e-13
>sp|Q6XBF8|CDR1_ARATH Aspartic proteinase CDR1 OS=Arabidopsis thaliana GN=CDR1 PE=1 SV=1 Back     alignment and function desciption
 Score =  404 bits (1039), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 228/413 (55%), Positives = 286/413 (69%), Gaps = 24/413 (5%)

Query: 28  GFSVELIHRDSPKSPFYNSSETPYQRLRDALTRSLNRLNHFNQNSSISSSKASQADIIPN 87
           GF+ +LIHRDSPKSPFYN  ET  QRLR+A+ RS+NR+ HF +  +   +   Q D+  N
Sbjct: 30  GFTADLIHRDSPKSPFYNPMETSSQRLRNAIHRSVNRVFHFTEKDN---TPQPQIDLTSN 86

Query: 88  NANYLIRISIGTPPTERLAVADTGSDLIWTQCEPCPPSQCYMQDSPLFDPKMSSTYKSLP 147
           +  YL+ +SIGTPP   +A+ADTGSDL+WTQC PC    CY Q  PLFDPK SSTYK + 
Sbjct: 87  SGEYLMNVSIGTPPFPIMAIADTGSDLLWTQCAPC--DDCYTQVDPLFDPKTSSTYKDVS 144

Query: 148 CSSSQCASL-NQKSCSGVN--CQYSVSYGDGSFSNGNLATETVTLGSTTGQAVALPGITF 204
           CSSSQC +L NQ SCS  +  C YS+SYGD S++ GN+A +T+TLGS+  + + L  I  
Sbjct: 145 CSSSQCTALENQASCSTNDNTCSYSLSYGDNSYTKGNIAVDTLTLGSSDTRPMQLKNIII 204

Query: 205 GCGTNNGGLFNSKTTGIVGLGGGDISLISQMRTTIAGKFSYCLVPVSS-----TKINFGT 259
           GCG NN G FN K +GIVGLGGG +SLI Q+  +I GKFSYCLVP++S     +KINFGT
Sbjct: 205 GCGHNNAGTFNKKGSGIVGLGGGPVSLIKQLGDSIDGKFSYCLVPLTSKKDQTSKINFGT 264

Query: 260 NGIVSGPGVVSTPL-TKA--KTFYVLTIDAISVGNQRL-------GVSTPDIVIDSGTTL 309
           N IVSG GVVSTPL  KA  +TFY LT+ +ISVG++++         S  +I+IDSGTTL
Sbjct: 265 NAIVSGSGVVSTPLIAKASQETFYYLTLKSISVGSKQIQYSGSDSESSEGNIIIDSGTTL 324

Query: 310 TFLPQGYNSNLLSVMSSMIEAQPVADPTGSLELCYSFNSLSQVPEVTIHFRGADVKLSRS 369
           T LP  + S L   ++S I+A+   DP   L LCYS     +VP +T+HF GADVKL  S
Sbjct: 325 TLLPTEFYSELEDAVASSIDAEKKQDPQSGLSLCYSATGDLKVPVITMHFDGADVKLDSS 384

Query: 370 NFFVKVSEDIVCSVFKGITNSVPIYGNIMQTNFLVGYDIEQQTVSFKPTDCTK 422
           N FV+VSED+VC  F+G + S  IYGN+ Q NFLVGYD   +TVSFKPTDC K
Sbjct: 385 NAFVQVSEDLVCFAFRG-SPSFSIYGNVAQMNFLVGYDTVSKTVSFKPTDCAK 436
Involved in salicylic acid-dependent inducible resistance responses. May release an endogenous peptide elicitor required for the activation of inducible resistance mechanisms. Possesses protease activity in vitro.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 4EC: .EC: 2EC: 3EC: .EC: -
>sp|Q3EBM5|ASPR1_ARATH Probable aspartic protease At2g35615 OS=Arabidopsis thaliana GN=At2g35615 PE=3 SV=1 Back     alignment and function description
>sp|Q766C3|NEP1_NEPGR Aspartic proteinase nepenthesin-1 OS=Nepenthes gracilis GN=nep1 PE=1 SV=1 Back     alignment and function description
>sp|Q766C2|NEP2_NEPGR Aspartic proteinase nepenthesin-2 OS=Nepenthes gracilis GN=nep2 PE=1 SV=1 Back     alignment and function description
>sp|Q9LS40|ASPG1_ARATH Protein ASPARTIC PROTEASE IN GUARD CELL 1 OS=Arabidopsis thaliana GN=ASPG1 PE=1 SV=1 Back     alignment and function description
>sp|Q9LHE3|ASPG2_ARATH Protein ASPARTIC PROTEASE IN GUARD CELL 2 OS=Arabidopsis thaliana GN=ASPG2 PE=2 SV=1 Back     alignment and function description
>sp|Q9S9K4|ASPL2_ARATH Aspartic proteinase-like protein 2 OS=Arabidopsis thaliana GN=At1g65240 PE=1 SV=2 Back     alignment and function description
>sp|Q9LZL3|PCS1L_ARATH Aspartic proteinase PCS1 OS=Arabidopsis thaliana GN=PCS1 PE=2 SV=1 Back     alignment and function description
>sp|Q9LX20|ASPL1_ARATH Aspartic proteinase-like protein 1 OS=Arabidopsis thaliana GN=At5g10080 PE=1 SV=1 Back     alignment and function description
>sp|P07267|CARP_YEAST Saccharopepsin OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PEP4 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query423
224130878440 predicted protein [Populus trichocarpa] 0.995 0.956 0.509 1e-121
255566010439 Aspartic proteinase nepenthesin-1 precur 0.990 0.954 0.537 1e-116
297805038440 predicted protein [Arabidopsis lyrata su 0.926 0.890 0.549 1e-110
15242803437 aspartyl protease family protein [Arabid 0.919 0.890 0.552 1e-110
116831531438 unknown [Arabidopsis thaliana] 0.919 0.888 0.552 1e-110
357492389434 Aspartic proteinase nepenthesin-1 [Medic 0.959 0.935 0.491 1e-110
357492401434 Aspartic proteinase nepenthesin-1 [Medic 0.983 0.958 0.478 1e-108
224126551440 predicted protein [Populus trichocarpa] 0.983 0.945 0.485 1e-107
356546370434 PREDICTED: probable aspartic protease At 0.947 0.923 0.474 1e-105
15217764431 aspartyl protease-like protein [Arabidop 0.921 0.904 0.520 1e-105
>gi|224130878|ref|XP_002320947.1| predicted protein [Populus trichocarpa] gi|222861720|gb|EEE99262.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  441 bits (1135), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 225/442 (50%), Positives = 304/442 (68%), Gaps = 21/442 (4%)

Query: 1   MATF---LSCVFILFFLCFYVVSPIEAQTGGFSVELIHRDSPKSPFYNSSETPYQRLRDA 57
           MA F   LS    +  LC      I A+  GF+V+LIHRDSP SPFYNS ET  QR+ +A
Sbjct: 1   MAAFRSPLSFALAIALLCVSGFGCIYARKVGFTVDLIHRDSPLSPFYNSEETDLQRINNA 60

Query: 58  LTRSLNRLNHFNQNSSIS-SSKASQADIIPNNANYLIRISIGTPPTERLAVADTGSDLIW 116
           L RS++R++HF+  ++ S S KA+++D+  N   YL+ +S+GTPP + + +ADTGSDLIW
Sbjct: 61  LRRSISRVHHFDPIAAASVSPKAAESDVTSNRGEYLMSLSLGTPPFKIMGIADTGSDLIW 120

Query: 117 TQCEPCPPSQCYMQDSPLFDPKMSSTYKSLPCSSSQCASLNQKSCSGVNCQYSVSYGDGS 176
           TQC+PC   +CY Q  PLFDPK S TY+   C + QC+ L+Q +CSG  CQY  SYGD S
Sbjct: 121 TQCKPC--ERCYKQVDPLFDPKSSKTYRDFSCDARQCSLLDQSTCSGNICQYQYSYGDRS 178

Query: 177 FSNGNLATETVTLGSTTGQAVALPGITFGCGTNNGGLFNSKTTGIVGLGGGDISLISQMR 236
           ++ GN+A++T+TL STTG  V+ P    GCG  N G F+ K +GIVGLG G +SLISQM 
Sbjct: 179 YTMGNVASDTITLDSTTGSPVSFPKTVIGCGHENDGTFSDKGSGIVGLGAGPLSLISQMG 238

Query: 237 TTIAGKFSYCLVPVS-----STKINFGTNGIVSGPGVVSTPLTKAKT---FYVLTIDAIS 288
           +++ GKFSYCLVP+S     S+K+NFG+N +VSGPGV STPL  ++T   FY LT++A+S
Sbjct: 239 SSVGGKFSYCLVPLSSRAGNSSKLNFGSNAVVSGPGVQSTPLLSSETMSSFYFLTLEAMS 298

Query: 289 VGNQR-------LGVSTPDIVIDSGTTLTFLPQGYNSNLLSVMSSMIEAQPVADPTGSLE 341
           VGN+R       LG    +I+IDSGTTLT +P  + SNL + + + +E +   DP+G L 
Sbjct: 299 VGNERIKFGDSSLGTGEGNIIIDSGTTLTIVPDDFFSNLSTAVGNQVEGRRAEDPSGFLS 358

Query: 342 LCYSFNSLSQVPEVTIHFRGADVKLSRSNFFVKVSEDIVCSVFKGITNSVPIYGNIMQTN 401
           +CYS  S  +VP +T HF GADVKL   N FV+VS+D+VC  F   T+ + IYGN+ Q N
Sbjct: 359 VCYSATSDLKVPAITAHFTGADVKLKPINTFVQVSDDVVCLAFASTTSGISIYGNVAQMN 418

Query: 402 FLVGYDIEQQTVSFKPTDCTKQ 423
           FLV Y+I+ +++SFKPTDCTK+
Sbjct: 419 FLVEYNIQGKSLSFKPTDCTKK 440

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255566010|ref|XP_002523993.1| Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis] gi|223536720|gb|EEF38361.1| Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|297805038|ref|XP_002870403.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297316239|gb|EFH46662.1| predicted protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|15242803|ref|NP_198319.1| aspartyl protease family protein [Arabidopsis thaliana] gi|75130158|sp|Q6XBF8.1|CDR1_ARATH RecName: Full=Aspartic proteinase CDR1; AltName: Full=Protein CONSTITUTIVE DISEASE RESISTANCE 1; Flags: Precursor gi|37935737|gb|AAP72988.1| CDR1 [Arabidopsis thaliana] gi|91806924|gb|ABE66189.1| aspartyl protease family protein [Arabidopsis thaliana] gi|109946613|gb|ABG48485.1| At5g33340 [Arabidopsis thaliana] gi|332006513|gb|AED93896.1| aspartyl protease family protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|116831531|gb|ABK28718.1| unknown [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|357492389|ref|XP_003616483.1| Aspartic proteinase nepenthesin-1 [Medicago truncatula] gi|355517818|gb|AES99441.1| Aspartic proteinase nepenthesin-1 [Medicago truncatula] Back     alignment and taxonomy information
>gi|357492401|ref|XP_003616489.1| Aspartic proteinase nepenthesin-1 [Medicago truncatula] gi|355517824|gb|AES99447.1| Aspartic proteinase nepenthesin-1 [Medicago truncatula] Back     alignment and taxonomy information
>gi|224126551|ref|XP_002329582.1| predicted protein [Populus trichocarpa] gi|222870291|gb|EEF07422.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356546370|ref|XP_003541599.1| PREDICTED: probable aspartic protease At2g35615-like [Glycine max] Back     alignment and taxonomy information
>gi|15217764|ref|NP_176663.1| aspartyl protease-like protein [Arabidopsis thaliana] gi|5042418|gb|AAD38257.1|AC006193_13 Hypothetical Protein [Arabidopsis thaliana] gi|332196174|gb|AEE34295.1| aspartyl protease-like protein [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query423
TAIR|locus:2145954437 CDR1 "CONSTITUTIVE DISEASE RES 0.983 0.951 0.536 1.8e-112
TAIR|locus:2010786431 AT1G64830 [Arabidopsis thalian 0.971 0.953 0.504 6.5e-106
TAIR|locus:504955954447 AT2G35615 [Arabidopsis thalian 0.666 0.630 0.473 5.4e-94
TAIR|locus:2206184445 AT1G31450 [Arabidopsis thalian 0.666 0.633 0.449 4.8e-93
TAIR|locus:2057831396 AT2G28010 [Arabidopsis thalian 0.765 0.818 0.413 8.7e-69
TAIR|locus:2046228395 AT2G28040 [Arabidopsis thalian 0.758 0.812 0.422 2.9e-66
TAIR|locus:2062809756 AT2G28220 [Arabidopsis thalian 0.768 0.429 0.396 6.1e-66
TAIR|locus:2046158392 AT2G28030 [Arabidopsis thalian 0.761 0.821 0.425 5.2e-65
TAIR|locus:2056916461 AT2G03200 [Arabidopsis thalian 0.640 0.587 0.354 3.8e-60
TAIR|locus:2095042500 ASPG1 "ASPARTIC PROTEASE IN GU 0.758 0.642 0.370 1.6e-54
TAIR|locus:2145954 CDR1 "CONSTITUTIVE DISEASE RESISTANCE 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1110 (395.8 bits), Expect = 1.8e-112, P = 1.8e-112
 Identities = 237/442 (53%), Positives = 296/442 (66%)

Query:     1 MATFLSCVFI-LFFLCFYVVSPIEAQTG-GFSVELIHRDSPKSPFYNSSETPYQRLRDAL 58
             MA+  S V + L  L    +S   A+   GF+ +LIHRDSPKSPFYN  ET  QRLR+A+
Sbjct:     1 MASLFSSVLLSLCLLSSLFLSNANAKPKLGFTADLIHRDSPKSPFYNPMETSSQRLRNAI 60

Query:    59 TRSLNRLNHFNQNXXXXXXXXXQADIIPNNANYLIRISIGTPPTERLAVADTGSDLIWTQ 118
              RS+NR+ HF +          Q D+  N+  YL+ +SIGTPP   +A+ADTGSDL+WTQ
Sbjct:    61 HRSVNRVFHFTEKDNTPQP---QIDLTSNSGEYLMNVSIGTPPFPIMAIADTGSDLLWTQ 117

Query:   119 CEPCPPSQCYMQDSPLFDPKMSSTYKSLPCSSSQCASL-NQKSCSGVN--CQYSVSYGDG 175
             C PC    CY Q  PLFDPK SSTYK + CSSSQC +L NQ SCS  +  C YS+SYGD 
Sbjct:   118 CAPC--DDCYTQVDPLFDPKTSSTYKDVSCSSSQCTALENQASCSTNDNTCSYSLSYGDN 175

Query:   176 SFSNGNLATETVTLGSTTGQAVALPGITFGCGTNNGGLFNSKTTGIVGLGGGDISLISQM 235
             S++ GN+A +T+TLGS+  + + L  I  GCG NN G FN K +GIVGLGGG +SLI Q+
Sbjct:   176 SYTKGNIAVDTLTLGSSDTRPMQLKNIIIGCGHNNAGTFNKKGSGIVGLGGGPVSLIKQL 235

Query:   236 RTTIAGKFSYCLVPVSS-----TKINFGTNGIVSGPGVVSTPL-TKA--KTFYVLTIDAI 287
               +I GKFSYCLVP++S     +KINFGTN IVSG GVVSTPL  KA  +TFY LT+ +I
Sbjct:   236 GDSIDGKFSYCLVPLTSKKDQTSKINFGTNAIVSGSGVVSTPLIAKASQETFYYLTLKSI 295

Query:   288 SVGNQRLGVSTPD-------IVIDSGTTLTFLPQGYNSNLLSVMSSMIEAQPVADPTGSL 340
             SVG++++  S  D       I+IDSGTTLT LP  + S L   ++S I+A+   DP   L
Sbjct:   296 SVGSKQIQYSGSDSESSEGNIIIDSGTTLTLLPTEFYSELEDAVASSIDAEKKQDPQSGL 355

Query:   341 ELCYSFNSLSQVPEVTIHFRGADVKLSRSNFFVKVSEDIVCSVFKGITNSVPIYGNIMQT 400
              LCYS     +VP +T+HF GADVKL  SN FV+VSED+VC  F+G + S  IYGN+ Q 
Sbjct:   356 SLCYSATGDLKVPVITMHFDGADVKLDSSNAFVQVSEDLVCFAFRG-SPSFSIYGNVAQM 414

Query:   401 NFLVGYDIEQQTVSFKPTDCTK 422
             NFLVGYD   +TVSFKPTDC K
Sbjct:   415 NFLVGYDTVSKTVSFKPTDCAK 436
GO:0004190 "aspartic-type endopeptidase activity" evidence=IEA;ISS;IDA
GO:0005576 "extracellular region" evidence=ISM
GO:0006508 "proteolysis" evidence=IEA;ISS
GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=IMP;IDA
GO:0010337 "regulation of salicylic acid metabolic process" evidence=IMP
GO:0042742 "defense response to bacterium" evidence=IMP
GO:0048046 "apoplast" evidence=IDA
TAIR|locus:2010786 AT1G64830 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:504955954 AT2G35615 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2206184 AT1G31450 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2057831 AT2G28010 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2046228 AT2G28040 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2062809 AT2G28220 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2046158 AT2G28030 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2056916 AT2G03200 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2095042 ASPG1 "ASPARTIC PROTEASE IN GUARD CELL 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q6XBF8CDR1_ARATH3, ., 4, ., 2, 3, ., -0.55200.91960.8901yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.4.230.766
3rd Layer3.4.23.120.824

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query423
PLN03146431 PLN03146, PLN03146, aspartyl protease family prote 0.0
cd05476265 cd05476, pepsin_A_like_plant, Chroloplast Nucleoid 1e-75
cd05472299 cd05472, cnd41_like, Chloroplast Nucleoids DNA-bin 2e-67
cd05471283 cd05471, pepsin_like, Pepsin-like aspartic proteas 1e-43
pfam00026316 pfam00026, Asp, Eukaryotic aspartyl protease 2e-23
cd05475273 cd05475, nucellin_like, Nucellins, plant aspartic 2e-19
cd05470109 cd05470, pepsin_retropepsin_like, Cellular and ret 2e-16
cd05488320 cd05488, Proteinase_A_fungi, Fungal Proteinase A , 3e-16
cd06096326 cd06096, Plasmepsin_5, Plasmepsins are a class of 5e-15
cd06097278 cd06097, Aspergillopepsin_like, Aspergillopepsin_l 5e-15
cd05489362 cd05489, xylanase_inhibitor_I_like, TAXI-I inhibit 4e-14
cd05485329 cd05485, Cathepsin_D_like, Cathepsin_D_like, pepsi 1e-10
cd05477318 cd05477, gastricsin, Gastricsins, asparate proteas 2e-10
cd05478317 cd05478, pepsin_A, Pepsin A, aspartic protease pro 5e-10
cd05474295 cd05474, SAP_like, SAPs, pepsin-like proteinases s 1e-08
cd06098317 cd06098, phytepsin, Phytepsin, a plant homolog of 2e-08
cd05490325 cd05490, Cathepsin_D2, Cathepsin_D2, pepsin family 4e-08
cd05486316 cd05486, Cathespin_E, Cathepsin E, non-lysosomal a 6e-07
cd05487326 cd05487, renin_like, Renin stimulates production o 7e-06
PTZ00165482 PTZ00165, PTZ00165, aspartyl protease; Provisional 1e-05
cd05473364 cd05473, beta_secretase_like, Beta-secretase, aspa 2e-05
>gnl|CDD|178691 PLN03146, PLN03146, aspartyl protease family protein; Provisional Back     alignment and domain information 
 Score =  561 bits (1449), Expect = 0.0
 Identities = 256/435 (58%), Positives = 306/435 (70%), Gaps = 22/435 (5%)

Query: 6   SCVFILFFLCFYVVSPIEAQTGGFSVELIHRDSPKSPFYNSSETPYQRLRDALTRSLNRL 65
           S +  L    F  +S  EA  GGF+V+LIHRDSPKSPFYN SETP QRLR+A  RS++R+
Sbjct: 2   SVLLALCLFSFSELSAAEAPKGGFTVDLIHRDSPKSPFYNPSETPSQRLRNAFRRSISRV 61

Query: 66  NHFNQNSSISSSKASQADIIPNNANYLIRISIGTPPTERLAVADTGSDLIWTQCEPCPPS 125
           NHF    +  S    Q+D+I N   YL+ ISIGTPP   LA+ADTGSDLIWTQC+PC   
Sbjct: 62  NHFRPTDA--SPNDPQSDLISNGGEYLMNISIGTPPVPILAIADTGSDLIWTQCKPCD-- 117

Query: 126 QCYMQDSPLFDPKMSSTYKSLPCSSSQCASL-NQKSCSGVN-CQYSVSYGDGSFSNGNLA 183
            CY Q SPLFDPK SSTYK + C SSQC +L NQ SCS  N C YS SYGDGSF+ GNLA
Sbjct: 118 DCYKQVSPLFDPKKSSTYKDVSCDSSQCQALGNQASCSDENTCTYSYSYGDGSFTKGNLA 177

Query: 184 TETVTLGSTTGQAVALPGITFGCGTNNGGLFNSKTTGIVGLGGGDISLISQMRTTIAGKF 243
            ET+T+GST+G+ V+ PGI FGCG NNGG F+ K +GIVGLGGG +SLISQ+ ++I GKF
Sbjct: 178 VETLTIGSTSGRPVSFPGIVFGCGHNNGGTFDEKGSGIVGLGGGPLSLISQLGSSIGGKF 237

Query: 244 SYCLVPVSST-----KINFGTNGIVSGPGVVSTPLTKAK--TFYVLTIDAISVGNQRL-- 294
           SYCLVP+SS      KINFGTN IVSG GVVSTPL      TFY LT++AISVG+++L  
Sbjct: 238 SYCLVPLSSDSNGTSKINFGTNAIVSGSGVVSTPLVSKDPDTFYYLTLEAISVGSKKLPY 297

Query: 295 ------GVSTPDIVIDSGTTLTFLPQGYNSNLLSVMSSMIEAQPVADPTGSLELCYSFNS 348
                 GV   +I+IDSGTTLT LP  + S L S +   I  + V+DP G L LCYS  S
Sbjct: 298 TGSSKNGVEEGNIIIDSGTTLTLLPSDFYSELESAVEEAIGGERVSDPQGLLSLCYSSTS 357

Query: 349 LSQVPEVTIHFRGADVKLSRSNFFVKVSEDIVCSVFKGITNSVPIYGNIMQTNFLVGYDI 408
             ++P +T HF GADVKL   N FVKVSED+VC      T+S+ I+GN+ Q NFLVGYD+
Sbjct: 358 DIKLPIITAHFTGADVKLQPLNTFVKVSEDLVCFAMIP-TSSIAIFGNLAQMNFLVGYDL 416

Query: 409 EQQTVSFKPTDCTKQ 423
           E +TVSFKPTDCTK 
Sbjct: 417 ESKTVSFKPTDCTKM 431

Length = 431
>gnl|CDD|133143 cd05476, pepsin_A_like_plant, Chroloplast Nucleoids DNA-binding Protease and Nucellin, pepsin-like aspartic proteases from plants Back     alignment and domain information
>gnl|CDD|133139 cd05472, cnd41_like, Chloroplast Nucleoids DNA-binding Protease, catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase Back     alignment and domain information
>gnl|CDD|133138 cd05471, pepsin_like, Pepsin-like aspartic proteases, bilobal enzymes that cleave bonds in peptides at acidic pH Back     alignment and domain information
>gnl|CDD|215663 pfam00026, Asp, Eukaryotic aspartyl protease Back     alignment and domain information
>gnl|CDD|133142 cd05475, nucellin_like, Nucellins, plant aspartic proteases specifically expressed in nucellar cells during degradation Back     alignment and domain information
>gnl|CDD|133137 cd05470, pepsin_retropepsin_like, Cellular and retroviral pepsin-like aspartate proteases Back     alignment and domain information
>gnl|CDD|133155 cd05488, Proteinase_A_fungi, Fungal Proteinase A , aspartic proteinase superfamily Back     alignment and domain information
>gnl|CDD|133160 cd06096, Plasmepsin_5, Plasmepsins are a class of aspartic proteinases produced by the plasmodium parasite Back     alignment and domain information
>gnl|CDD|133161 cd06097, Aspergillopepsin_like, Aspergillopepsin_like, aspartic proteases of fungal origin Back     alignment and domain information
>gnl|CDD|133156 cd05489, xylanase_inhibitor_I_like, TAXI-I inhibits degradation of xylan in the cell wall Back     alignment and domain information
>gnl|CDD|133152 cd05485, Cathepsin_D_like, Cathepsin_D_like, pepsin family of proteinases Back     alignment and domain information
>gnl|CDD|133144 cd05477, gastricsin, Gastricsins, asparate proteases produced in gastric mucosa Back     alignment and domain information
>gnl|CDD|133145 cd05478, pepsin_A, Pepsin A, aspartic protease produced in gastric mucosa of mammals Back     alignment and domain information
>gnl|CDD|133141 cd05474, SAP_like, SAPs, pepsin-like proteinases secreted from pathogens to degrade host proteins Back     alignment and domain information
>gnl|CDD|133162 cd06098, phytepsin, Phytepsin, a plant homolog of mammalian lysosomal pepsins Back     alignment and domain information
>gnl|CDD|133157 cd05490, Cathepsin_D2, Cathepsin_D2, pepsin family of proteinases Back     alignment and domain information
>gnl|CDD|133153 cd05486, Cathespin_E, Cathepsin E, non-lysosomal aspartic protease Back     alignment and domain information
>gnl|CDD|133154 cd05487, renin_like, Renin stimulates production of angiotensin and thus affects blood pressure Back     alignment and domain information
>gnl|CDD|240300 PTZ00165, PTZ00165, aspartyl protease; Provisional Back     alignment and domain information
>gnl|CDD|133140 cd05473, beta_secretase_like, Beta-secretase, aspartic-acid protease important in the pathogenesis of Alzheimer's disease Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 423
PLN03146431 aspartyl protease family protein; Provisional 100.0
PTZ00165482 aspartyl protease; Provisional 100.0
cd05478317 pepsin_A Pepsin A, aspartic protease produced in g 100.0
cd05490325 Cathepsin_D2 Cathepsin_D2, pepsin family of protei 100.0
cd06096326 Plasmepsin_5 Plasmepsins are a class of aspartic p 100.0
cd05486316 Cathespin_E Cathepsin E, non-lysosomal aspartic pr 100.0
KOG1339398 consensus Aspartyl protease [Posttranslational mod 100.0
cd06098317 phytepsin Phytepsin, a plant homolog of mammalian 100.0
cd05477318 gastricsin Gastricsins, asparate proteases produce 100.0
cd05472299 cnd41_like Chloroplast Nucleoids DNA-binding Prote 100.0
cd05487326 renin_like Renin stimulates production of angioten 100.0
cd05488320 Proteinase_A_fungi Fungal Proteinase A , aspartic 100.0
cd05485329 Cathepsin_D_like Cathepsin_D_like, pepsin family o 100.0
PTZ00147453 plasmepsin-1; Provisional 100.0
PTZ00013450 plasmepsin 4 (PM4); Provisional 100.0
cd05489362 xylanase_inhibitor_I_like TAXI-I inhibits degradat 100.0
cd05473364 beta_secretase_like Beta-secretase, aspartic-acid 100.0
cd05475273 nucellin_like Nucellins, plant aspartic proteases 100.0
cd06097278 Aspergillopepsin_like Aspergillopepsin_like, aspar 100.0
cd05476265 pepsin_A_like_plant Chroloplast Nucleoids DNA-bind 100.0
PF00026317 Asp: Eukaryotic aspartyl protease The Prosite entr 100.0
cd05474295 SAP_like SAPs, pepsin-like proteinases secreted fr 100.0
cd05471283 pepsin_like Pepsin-like aspartic proteases, biloba 100.0
PF14543164 TAXi_N: Xylanase inhibitor N-terminal; PDB: 3HD8_A 99.97
PF14541161 TAXi_C: Xylanase inhibitor C-terminal; PDB: 3AUP_D 99.91
cd05470109 pepsin_retropepsin_like Cellular and retroviral pe 99.91
cd0548396 retropepsin_like_bacteria Bacterial aspartate prot 98.21
TIGR02281121 clan_AA_DTGA clan AA aspartic protease, TIGR02281 97.07
PF1365090 Asp_protease_2: Aspartyl protease 96.95
cd05479124 RP_DDI RP_DDI; retropepsin-like domain of DNA dama 95.9
cd05479124 RP_DDI RP_DDI; retropepsin-like domain of DNA dama 95.54
PF11925370 DUF3443: Protein of unknown function (DUF3443); In 95.23
PF08284135 RVP_2: Retroviral aspartyl protease; InterPro: IPR 93.3
cd0548491 retropepsin_like_LTR_2 Retropepsins_like_LTR, peps 92.61
cd0609586 RP_RTVL_H_like Retropepsin of the RTVL_H family of 90.9
COG3577215 Predicted aspartyl protease [General function pred 90.28
PF1397572 gag-asp_proteas: gag-polyprotein putative aspartyl 89.24
cd0548491 retropepsin_like_LTR_2 Retropepsins_like_LTR, peps 86.56
TIGR03698107 clan_AA_DTGF clan AA aspartic protease, AF_0612 fa 85.0
PF00077100 RVP: Retroviral aspartyl protease The Prosite entr 84.76
PF02160201 Peptidase_A3: Cauliflower mosaic virus peptidase ( 82.7
TIGR02281121 clan_AA_DTGA clan AA aspartic protease, TIGR02281 81.05
>PLN03146 aspartyl protease family protein; Provisional Back     alignment and domain information 
Probab=100.00  E-value=1.1e-73  Score=567.55  Aligned_cols=405  Identities=61%  Similarity=1.033  Sum_probs=340.8

Q ss_pred             HHHhhccccccCCCceEEEEeccCCCCCCCCCCCCChhHHHHHHHhhhHhhhcccccccccCCCCCccceeecCCccEEE
Q 014537           14 LCFYVVSPIEAQTGGFSVELIHRDSPKSPFYNSSETPYQRLRDALTRSLNRLNHFNQNSSISSSKASQADIIPNNANYLI   93 (423)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~   93 (423)
                      +.++.+.+...+..+++++|+||+++++|+..+...+.++++++++|+.+|.+++..+...  ..........++++|++
T Consensus        10 ~~~~~~~~~~~~~~~~~~~l~h~~~~~sp~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~--~~~~~~~~~~~~~~Y~v   87 (431)
T PLN03146         10 FSFSELSAAEAPKGGFTVDLIHRDSPKSPFYNPSETPSQRLRNAFRRSISRVNHFRPTDAS--PNDPQSDLISNGGEYLM   87 (431)
T ss_pred             HHHhhhhhccccCCceEEEEEeCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHhhcccc--CCccccCcccCCccEEE
Confidence            5566666666788899999999999999987777778899999999999999887543222  12334445567889999


Q ss_pred             EEEecCCCceEEEEEEcCCCceeeeCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCccccCCCCC-CCCCC-CceeeEE
Q 014537           94 RISIGTPPTERLAVADTGSDLIWTQCEPCPPSQCYMQDSPLFDPKMSSTYKSLPCSSSQCASLNQK-SCSGV-NCQYSVS  171 (423)
Q Consensus        94 ~i~vGtP~q~~~~~~DTGSs~~WV~~~~c~~~~C~~~~~~~y~p~~Sst~~~~~c~~~~C~~~~~~-~c~~~-~~~~~~~  171 (423)
                      +|.||||||++.|++||||+++||+|.+|.  .|..+.++.|||++|+||+.++|.++.|...... .|..+ .|.|.+.
T Consensus        88 ~i~iGTPpq~~~vi~DTGS~l~Wv~C~~C~--~C~~~~~~~fdps~SST~~~~~C~s~~C~~~~~~~~c~~~~~c~y~i~  165 (431)
T PLN03146         88 NISIGTPPVPILAIADTGSDLIWTQCKPCD--DCYKQVSPLFDPKKSSTYKDVSCDSSQCQALGNQASCSDENTCTYSYS  165 (431)
T ss_pred             EEEcCCCCceEEEEECCCCCcceEcCCCCc--ccccCCCCcccCCCCCCCcccCCCCcccccCCCCCCCCCCCCCeeEEE
Confidence            999999999999999999999999999998  8988888999999999999999999999876643 47554 6999999


Q ss_pred             cCCCCeeeEEEEEEEEEecCCCCCceecCceEEEeEEecCCCCCCCcceeeecCCCCCchhhhhhhcccCceEEEeccCC
Q 014537          172 YGDGSFSNGNLATETVTLGSTTGQAVALPGITFGCGTNNGGLFNSKTTGIVGLGGGDISLISQMRTTIAGKFSYCLVPVS  251 (423)
Q Consensus       172 Yg~g~~~~G~~~~D~v~ig~~~~~~~~~~~~~fg~~~~~~~~~~~~~~GilGLg~~~~sl~~ql~~i~~~~Fs~~l~~~~  251 (423)
                      |+||+.+.|.+++|+|+|++..++.+.++++.|||+....+.|....+||||||++..|+++|++....++|||||.+..
T Consensus       166 Ygdgs~~~G~l~~Dtltlg~~~~~~~~v~~~~FGc~~~~~g~f~~~~~GilGLG~~~~Sl~sql~~~~~~~FSycL~~~~  245 (431)
T PLN03146        166 YGDGSFTKGNLAVETLTIGSTSGRPVSFPGIVFGCGHNNGGTFDEKGSGIVGLGGGPLSLISQLGSSIGGKFSYCLVPLS  245 (431)
T ss_pred             eCCCCceeeEEEEEEEEeccCCCCcceeCCEEEeCCCCCCCCccCCCceeEecCCCCccHHHHhhHhhCCcEEEECCCCC
Confidence            99999888999999999998655555799999999998877664468999999999999999987655679999997521


Q ss_pred             -----CceeeeCCCCccCCCCeEEeecc-C-CCCceEEEeEEEEeccEEecc--------CCCcEEEecCCcceecChhH
Q 014537          252 -----STKINFGTNGIVSGPGVVSTPLT-K-AKTFYVLTIDAISVGNQRLGV--------STPDIVIDSGTTLTFLPQGY  316 (423)
Q Consensus       252 -----~g~l~fGg~~~~~g~~~~~~p~~-~-~~~~w~v~l~~i~v~~~~~~~--------~~~~~iiDsGt~~~~lp~~~  316 (423)
                           .|.|+||+.+++.+.++.|+|++ + .+.+|.|+|++|+||++.+..        +..++||||||++++||+++
T Consensus       246 ~~~~~~g~l~fG~~~~~~~~~~~~tPl~~~~~~~~y~V~L~gIsVgg~~l~~~~~~~~~~~~g~~iiDSGTt~t~Lp~~~  325 (431)
T PLN03146        246 SDSNGTSKINFGTNAIVSGSGVVSTPLVSKDPDTFYYLTLEAISVGSKKLPYTGSSKNGVEEGNIIIDSGTTLTLLPSDF  325 (431)
T ss_pred             CCCCCcceEEeCCccccCCCCceEcccccCCCCCeEEEeEEEEEECCEECcCCccccccCCCCcEEEeCCccceecCHHH
Confidence                 29999999766666568999998 3 467999999999999988621        23579999999999999999


Q ss_pred             HHHHHHHHHhhhccCcCCCCCCCcccccccCCCCCCCeEEEEEeCcEEEeCCCceEEEeCCCeEEEEEEecCCCcceech
Q 014537          317 NSNLLSVMSSMIEAQPVADPTGSLELCYSFNSLSQVPEVTIHFRGADVKLSRSNFFVKVSEDIVCSVFKGITNSVPIYGN  396 (423)
Q Consensus       317 ~~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~P~i~~~f~g~~~~l~~~~~~~~~~~~~~C~~i~~~~~~~~ilG~  396 (423)
                      |++|.++|.+.+...........++.|+.......+|.|+|+|+|+++.|++++|+++..++..|+++... ...||||+
T Consensus       326 y~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~P~i~~~F~Ga~~~l~~~~~~~~~~~~~~Cl~~~~~-~~~~IlG~  404 (431)
T PLN03146        326 YSELESAVEEAIGGERVSDPQGLLSLCYSSTSDIKLPIITAHFTGADVKLQPLNTFVKVSEDLVCFAMIPT-SSIAIFGN  404 (431)
T ss_pred             HHHHHHHHHHHhccccCCCCCCCCCccccCCCCCCCCeEEEEECCCeeecCcceeEEEcCCCcEEEEEecC-CCceEECe
Confidence            99999999988864433233334567998644447899999999999999999999987777889998765 45799999


Q ss_pred             hhhcceEEEEECCCCEEEEeeCCCCCC
Q 014537          397 IMQTNFLVGYDIEQQTVSFKPTDCTKQ  423 (423)
Q Consensus       397 ~fl~~~y~vfD~~~~~igfa~~~c~~~  423 (423)
                      .|||++|++||++++|||||+++|+++
T Consensus       405 ~~q~~~~vvyDl~~~~igFa~~~C~~~  431 (431)
T PLN03146        405 LAQMNFLVGYDLESKTVSFKPTDCTKM  431 (431)
T ss_pred             eeEeeEEEEEECCCCEEeeecCCcCcC
Confidence            999999999999999999999999874

>PTZ00165 aspartyl protease; Provisional Back     alignment and domain information
>cd05478 pepsin_A Pepsin A, aspartic protease produced in gastric mucosa of mammals Back     alignment and domain information
>cd05490 Cathepsin_D2 Cathepsin_D2, pepsin family of proteinases Back     alignment and domain information
>cd06096 Plasmepsin_5 Plasmepsins are a class of aspartic proteinases produced by the plasmodium parasite Back     alignment and domain information
>cd05486 Cathespin_E Cathepsin E, non-lysosomal aspartic protease Back     alignment and domain information
>KOG1339 consensus Aspartyl protease [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd06098 phytepsin Phytepsin, a plant homolog of mammalian lysosomal pepsins Back     alignment and domain information
>cd05477 gastricsin Gastricsins, asparate proteases produced in gastric mucosa Back     alignment and domain information
>cd05472 cnd41_like Chloroplast Nucleoids DNA-binding Protease, catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase Back     alignment and domain information
>cd05487 renin_like Renin stimulates production of angiotensin and thus affects blood pressure Back     alignment and domain information
>cd05488 Proteinase_A_fungi Fungal Proteinase A , aspartic proteinase superfamily Back     alignment and domain information
>cd05485 Cathepsin_D_like Cathepsin_D_like, pepsin family of proteinases Back     alignment and domain information
>PTZ00147 plasmepsin-1; Provisional Back     alignment and domain information
>PTZ00013 plasmepsin 4 (PM4); Provisional Back     alignment and domain information
>cd05489 xylanase_inhibitor_I_like TAXI-I inhibits degradation of xylan in the cell wall Back     alignment and domain information
>cd05473 beta_secretase_like Beta-secretase, aspartic-acid protease important in the pathogenesis of Alzheimer's disease Back     alignment and domain information
>cd05475 nucellin_like Nucellins, plant aspartic proteases specifically expressed in nucellar cells during degradation Back     alignment and domain information
>cd06097 Aspergillopepsin_like Aspergillopepsin_like, aspartic proteases of fungal origin Back     alignment and domain information
>cd05476 pepsin_A_like_plant Chroloplast Nucleoids DNA-binding Protease and Nucellin, pepsin-like aspartic proteases from plants Back     alignment and domain information
>PF00026 Asp: Eukaryotic aspartyl protease The Prosite entry also includes Pfam:PF00077 Back     alignment and domain information
>cd05474 SAP_like SAPs, pepsin-like proteinases secreted from pathogens to degrade host proteins Back     alignment and domain information
>cd05471 pepsin_like Pepsin-like aspartic proteases, bilobal enzymes that cleave bonds in peptides at acidic pH Back     alignment and domain information
>PF14543 TAXi_N: Xylanase inhibitor N-terminal; PDB: 3HD8_A 3VLB_A 3VLA_A 3AUP_D 1T6G_A 1T6E_X 2B42_A Back     alignment and domain information
>PF14541 TAXi_C: Xylanase inhibitor C-terminal; PDB: 3AUP_D 3HD8_A 1T6G_A 1T6E_X 2B42_A 3VLB_A 3VLA_A Back     alignment and domain information
>cd05470 pepsin_retropepsin_like Cellular and retroviral pepsin-like aspartate proteases Back     alignment and domain information
>cd05483 retropepsin_like_bacteria Bacterial aspartate proteases, retropepsin-like protease family Back     alignment and domain information
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family Back     alignment and domain information
>PF13650 Asp_protease_2: Aspartyl protease Back     alignment and domain information
>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein Back     alignment and domain information
>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein Back     alignment and domain information
>PF11925 DUF3443: Protein of unknown function (DUF3443); InterPro: IPR021847 This family of proteins are functionally uncharacterised Back     alignment and domain information
>PF08284 RVP_2: Retroviral aspartyl protease; InterPro: IPR013242 This region defines single domain aspartyl proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses) Back     alignment and domain information
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases Back     alignment and domain information
>cd06095 RP_RTVL_H_like Retropepsin of the RTVL_H family of human endogenous retrovirus-like elements Back     alignment and domain information
>COG3577 Predicted aspartyl protease [General function prediction only] Back     alignment and domain information
>PF13975 gag-asp_proteas: gag-polyprotein putative aspartyl protease Back     alignment and domain information
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases Back     alignment and domain information
>TIGR03698 clan_AA_DTGF clan AA aspartic protease, AF_0612 family Back     alignment and domain information
>PF00077 RVP: Retroviral aspartyl protease The Prosite entry also includes Pfam:PF00026; InterPro: IPR018061 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>PF02160 Peptidase_A3: Cauliflower mosaic virus peptidase (A3); InterPro: IPR000588 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query423
2jxr_A329 Structure Of Yeast Proteinase A Length = 329 6e-15
1dp5_A329 The Structure Of Proteinase A Complexed With A Ia3 1e-14
1g0v_A329 The Structure Of Proteinase A Complexed With A Ia3 1e-14
1htr_B329 Crystal And Molecular Structures Of Human Progastri 3e-10
1uh7_A325 Crystal Structure Of Rhizopuspepsin At Ph 4.6 Lengt 3e-09
3apr_E325 Binding Of A Reduced Peptide Inhibitor To The Aspar 4e-09
4aa9_A320 Camel Chymosin At 1.6a Resolution Length = 320 2e-06
1zap_A342 Secreted Aspartic Protease From C. Albicans Length 2e-06
2h6s_A340 Secreted Aspartic Proteinase (sap) 3 From Candida A 2e-06
1tzs_A351 Crystal Structure Of An Activation Intermediate Of 2e-06
2qzx_A342 Secreted Aspartic Proteinase (Sap) 5 From Candida A 3e-06
1eag_A342 Secreted Aspartic Proteinase (Sap2) From Candida Al 5e-06
1j71_A334 Structure Of The Extracellular Aspartic Proteinase 8e-06
1am5_A324 The Crystal Structure And Proposed Amino Acid Seque 1e-05
1qdm_A 478 Crystal Structure Of Prophytepsin, A Zymogen Of A B 2e-05
2qzw_A341 Secreted Aspartic Proteinase (Sap) 1 From Candida A 4e-05
3vlb_A413 Crystal Structure Of Xeg-Edgp Length = 413 9e-05
3vla_A413 Crystal Structure Of Edgp Length = 413 9e-05
5pep_A326 X-Ray Analyses Of Aspartic Proteases. Ii. Three-Dim 1e-04
3psg_A370 The High Resolution Crystal Structure Of Porcine Pe 1e-04
2ewy_A383 Crystal Structure Of Human Bace2 In Complex With A 1e-04
1psa_A326 Structure Of A Pepsin(Slash)renin Inhibitor Complex 2e-04
1czi_E323 Chymosin Complex With The Inhibitor Cp-113972 Lengt 2e-04
3pep_A326 Revised 2.3 Angstroms Structure Of Porcine Pepsin. 2e-04
3fv3_A339 Secreted Aspartic Protease 1 From Candida Parapsilo 2e-04
2psg_A370 Refined Structure Of Porcine Pepsinogen At 1.8 Angs 2e-04
3cms_A323 Engineering Enzyme Sub-Site Specificity: Preparatio 3e-04
1f34_A326 Crystal Structure Of Ascaris Pepsin Inhibitor-3 Bou 3e-04
4pep_A326 The Molecular And Crystal Structures Of Monoclinic 3e-04
>pdb|2JXR|A Chain A, Structure Of Yeast Proteinase A Length = 329 Back     alignment and structure 
Iteration: 1

 Score = 78.6 bits (192), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 78/352 (22%), Positives = 142/352 (40%), Gaps = 62/352 (17%)
Query: 88  NANYLIRISIGTPPTERLAVADTGSDLIWTQCEPCPPSQCYMQDSPLFDPKMSSTYKSLP 147
           NA Y   I++GTPP     + DTGS  +W     C    C++     +D + SS+YK+  
Sbjct: 12  NAQYYTDITLGTPPQNFKVILDTGSSNLWVPSNECGSLACFLHSK--YDHEASSSYKA-- 67
Query: 148 CSSSQCASLNQKSCSGVNCQYSVSYGDGSFSNGNLATETVTLGSTT------GQAVALPG 201
                              ++++ YG GS   G ++ +T+++G  T       +A + PG
Sbjct: 68  ----------------NGTEFAIQYGTGSLE-GYISQDTLSIGDLTIPKQDFAEATSEPG 110
Query: 202 ITFGCGTNNGGLFNSKTTGIVGLGGGDISLIS---------QMRTTIAGKFSYCLVPVSS 252
           +TF  G         K  GI+GLG   IS+           Q       +F++ L   S 
Sbjct: 111 LTFAFG---------KFDGILGLGYDTISVDKVVPPFYNAIQQDLLDEKRFAFYLGDTSK 161
Query: 253 TKIN-----FGTNGIVSGPGVVSTPLTKAKTFYVLTIDAISVGNQRLGVSTPDIVIDSGT 307
              N     FG        G ++    + K ++ +  + I +G++   + +    ID+GT
Sbjct: 162 DTENGGEATFGGIDESKFKGDITWLPVRRKAYWEVKFEGIGLGDEYAELESHGAAIDTGT 221
Query: 308 TLTFLPQGYNSNLLSVMSSMIEAQPVADPTGSLELCYSFNSLSQVPEVTIHFRGADVKLS 367
           +L  LP G        ++ MI A+  A    + +     N+   +P++  +F G +  + 
Sbjct: 222 SLITLPSG--------LAEMINAEIGAKKGWTGQYTLDCNTRDNLPDLIFNFNGYNFTIG 273
Query: 368 RSNFFVKVSEDIVCSV----FKGITNSVPIYGNIMQTNFLVGYDIEQQTVSF 415
             ++ ++VS   + ++    F      + I G+     +   YDI    V  
Sbjct: 274 PYDYTLEVSGSCISAITPMDFPEPVGPLAIVGDAFLRKYYSIYDIGNNAVGL 325
>pdb|1DP5|A Chain A, The Structure Of Proteinase A Complexed With A Ia3 Mutant Inhibitor Length = 329 Back     alignment and structure
>pdb|1G0V|A Chain A, The Structure Of Proteinase A Complexed With A Ia3 Mutant, Mvv Length = 329 Back     alignment and structure
>pdb|1HTR|B Chain B, Crystal And Molecular Structures Of Human Progastricsin At 1.62 Angstroms Resolution Length = 329 Back     alignment and structure
>pdb|1UH7|A Chain A, Crystal Structure Of Rhizopuspepsin At Ph 4.6 Length = 325 Back     alignment and structure
>pdb|3APR|E Chain E, Binding Of A Reduced Peptide Inhibitor To The Aspartic Proteinase From Rhizopus Chinensis. Implications For A Mechanism Of Action Length = 325 Back     alignment and structure
>pdb|4AA9|A Chain A, Camel Chymosin At 1.6a Resolution Length = 320 Back     alignment and structure
>pdb|1ZAP|A Chain A, Secreted Aspartic Protease From C. Albicans Length = 342 Back     alignment and structure
>pdb|2H6S|A Chain A, Secreted Aspartic Proteinase (sap) 3 From Candida Albicans Length = 340 Back     alignment and structure
>pdb|1TZS|A Chain A, Crystal Structure Of An Activation Intermediate Of Cathepsin E Length = 351 Back     alignment and structure
>pdb|2QZX|A Chain A, Secreted Aspartic Proteinase (Sap) 5 From Candida Albicans Length = 342 Back     alignment and structure
>pdb|1EAG|A Chain A, Secreted Aspartic Proteinase (Sap2) From Candida Albicans Complexed With A70450 Length = 342 Back     alignment and structure
>pdb|1J71|A Chain A, Structure Of The Extracellular Aspartic Proteinase From Candida Tropicalis Yeast Length = 334 Back     alignment and structure
>pdb|1AM5|A Chain A, The Crystal Structure And Proposed Amino Acid Sequence Of A Pepsin From Atlantic Cod (Gadus Morhua) Length = 324 Back     alignment and structure
>pdb|1QDM|A Chain A, Crystal Structure Of Prophytepsin, A Zymogen Of A Barley Vacuolar Aspartic Proteinase. Length = 478 Back     alignment and structure
>pdb|2QZW|A Chain A, Secreted Aspartic Proteinase (Sap) 1 From Candida Albicans Length = 341 Back     alignment and structure
>pdb|3VLB|A Chain A, Crystal Structure Of Xeg-Edgp Length = 413 Back     alignment and structure
>pdb|3VLA|A Chain A, Crystal Structure Of Edgp Length = 413 Back     alignment and structure
>pdb|5PEP|A Chain A, X-Ray Analyses Of Aspartic Proteases. Ii. Three-Dimensional Structure Of The Hexagonal Crystal Form Of Porcine Pepsin At 2.3 Angstroms Resolution Length = 326 Back     alignment and structure
>pdb|3PSG|A Chain A, The High Resolution Crystal Structure Of Porcine Pepsinogen Length = 370 Back     alignment and structure
>pdb|2EWY|A Chain A, Crystal Structure Of Human Bace2 In Complex With A Hydroxyethylenamine Transition-State Inhibitor Length = 383 Back     alignment and structure
>pdb|1PSA|A Chain A, Structure Of A Pepsin(Slash)renin Inhibitor Complex Reveals A Novel Crystal Packing Induced By Minor Chemical Alterations In The Inhibitor Length = 326 Back     alignment and structure
>pdb|1CZI|E Chain E, Chymosin Complex With The Inhibitor Cp-113972 Length = 323 Back     alignment and structure
>pdb|3PEP|A Chain A, Revised 2.3 Angstroms Structure Of Porcine Pepsin. Evidence For A Flexible Subdomain Length = 326 Back     alignment and structure
>pdb|3FV3|A Chain A, Secreted Aspartic Protease 1 From Candida Parapsilosis In Complex With Pepstatin A Length = 339 Back     alignment and structure
>pdb|2PSG|A Chain A, Refined Structure Of Porcine Pepsinogen At 1.8 Angstroms Resolution Length = 370 Back     alignment and structure
>pdb|3CMS|A Chain A, Engineering Enzyme Sub-Site Specificity: Preparation, Kinetic Characterization And X-Ray Analysis At 2.0-Angstroms Resolution Of Val111phe Site-Mutated Calf Chymosin Length = 323 Back     alignment and structure
>pdb|1F34|A Chain A, Crystal Structure Of Ascaris Pepsin Inhibitor-3 Bound To Porcine Pepsin Length = 326 Back     alignment and structure
>pdb|4PEP|A Chain A, The Molecular And Crystal Structures Of Monoclinic Porcine Pepsin Refined At 1.8 Angstroms Resolution Length = 326 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query423
3aup_A403 SBG7S, BG, basic 7S globulin; pepsin-like fold, pl 1e-76
1t6e_X381 Xylanase inhibitor; two beta-barrel domain structu 2e-66
3vla_A413 EDGP; extracellular, inhibitor, plant protein; HET 1e-64
3c9x_A329 Trichoderma reesei aspartic protease; aspartic pro 1e-28
1oew_A329 Endothiapepsin; hydrolase, aspartic proteinase mec 3e-26
3fv3_A339 SAPP1P-secreted aspartic protease 1; secreted aspa 5e-26
1j71_A334 Candidapepsin, aspartic proteinase; candida tropic 6e-26
3pvk_A342 Candidapepsin-2; hydrolase; 1.27A {Candida albican 7e-26
1ibq_A325 Aspergillopepsin; aspartic proteinase, hydrolase; 2e-25
2apr_A325 Rhizopuspepsin; hydrolase (aspartic proteinase); 1 6e-25
1bxo_A323 Protein (penicillopepsin); hydrolase, phosphonate 4e-24
1izd_A323 Aspartic proteinase; sugar binding, acid protease, 6e-24
2qzx_A342 Candidapepsin-5; aspartic proteinase, aspartyl pro 6e-24
1dpj_A329 Proteinase A; proteinase A, hydrolase-hydrolase in 2e-23
1am5_A324 Pepsin, acid proteinase; aspartyl protease, hydrol 3e-22
2x0b_A383 Renin; hydrolase-hormone complex, hydrolase hormon 4e-22
3k1w_A341 Renin; protease, alternative splicing, aspartyl pr 6e-22
3lpj_A455 Beta-secretase 1; alzheimer'S, aspartyl protease, 7e-22
2bju_A453 Plasmepsin II; aspartic proteinase, drug design, m 8e-22
3qvc_A451 Histo-aspartic protease; HAP, plasmepsin, zymogen, 2e-21
1htr_B329 Gastricsin; aspartyl protease; 1.62A {Homo sapiens 2e-21
1tzs_A351 Cathepsin E; hydrolase, aspartic protease, activat 4e-21
3psg_A370 Pepsinogen; hydrolase(acid proteinase zymogen); 1. 4e-21
2ewy_A383 Beta-secretase 2; BACE2, aspartic protease, hydrol 8e-21
1mpp_A361 Pepsin; hydrolase(acid proteinase); 2.00A {Rhizomu 2e-20
3cms_A323 Chymosin B; hydrolase, acid proteinase; 2.00A {Bos 2e-19
2qp8_A395 Beta-secretase 1; BACE1, protease, alternative spl 4e-19
1miq_A375 Plasmepsin; aspartic proteinase zymogen, domain op 4e-19
1qdm_A478 Prophytepsin; aspartic proteinases, saposin-like d 1e-18
1yg9_A330 Aspartic protease BLA G 2; allegren, hydrolase, al 2e-18
1b5f_A239 Protein (cardosin A); hydrolase, aspartic proteina 2e-17
1wkr_A340 Polyporopepsin; hydrolase, hydrolase-hydrolase inh 7e-16
1lya_A97 Cathepsin D; lysosomal aspartic protease; HET: NAG 4e-11
1lya_B241 Cathepsin D; lysosomal aspartic protease; HET: NAG 5e-05
>3aup_A SBG7S, BG, basic 7S globulin; pepsin-like fold, plant protein; 1.91A {Glycine max} Length = 403 Back     alignment and structure
 Score =  243 bits (620), Expect = 1e-76
 Identities = 65/394 (16%), Positives = 123/394 (31%), Gaps = 48/394 (12%)

Query: 74  ISSSKASQADIIP-----NNANYLIRISIGTPPTERLAVADTGSDLIWTQCEPCPPSQCY 128
           ++ +K     ++P     +   +   +   TP  +   + D   + +W  CE        
Sbjct: 1   VTPTKPINLVVLPVQNDGSTGLHWANLQKRTPLMQVPVLVDLNGNHLWVNCEQQ--YSSK 58

Query: 129 MQDSPLFDPKMSSTYKSLPCSSSQCASLNQKSCSGVNCQ-YSVSYGDGSFSNGNLATETV 187
              +P       S   +  C S   AS  +  C    C   S +        G L  + +
Sbjct: 59  TYQAPFCHSTQCSRANTHQCLSCPAAS--RPGCHKNTCGLMSTNPITQQTGLGELGEDVL 116

Query: 188 TLGSTTGQA------VALPGITFGCGTNNGGL--FNSKTTGIVGLGGGDISLISQMRTT- 238
            + +T G        V +P   F C  +          T G+ GLG   ISL +Q+ +  
Sbjct: 117 AIHATQGSTQQLGPLVTVPQFLFSCAPSFLVQKGLPRNTQGVAGLGHAPISLPNQLASHF 176

Query: 239 -IAGKFSYCLVPVSSTK--INFG---------TNGIVSGPGVVSTPLTKAKTFYVLTIDA 286
            +  +F+ CL    ++K  I FG          N  +      +      +  Y + +++
Sbjct: 177 GLQRQFTTCLSRYPTSKGAIIFGDAPNNMRQFQNQDIFHDLAFTPLTITLQGEYNVRVNS 236

Query: 287 ISVGNQRLGVSTPD-----------IVIDSGTTLTFLPQGYNSNLLSVMSSMIEAQPVAD 335
           I +    +                  +I + T    L Q        V +  +  Q    
Sbjct: 237 IRINQHSVFPLNKISSTIVGSTSGGTMISTSTPHMVLQQSVYQAFTQVFAQQLPKQAQVK 296

Query: 336 PTGSLELCYSFNSLSQVPEVTIHFR---GADVKLSRSNFFVKVSEDIVCSVFKGITNSVP 392
                 LC++ N ++  P V +      G   ++S  +  V+    + C           
Sbjct: 297 SVAPFGLCFNSNKINAYPSVDLVMDKPNGPVWRISGEDLMVQAQPGVTCLGVMNGGMQPR 356

Query: 393 ---IYGNIMQTNFLVGYDIEQQTVSFKPTDCTKQ 423
                G       LV +D+ +  V F  +     
Sbjct: 357 AEITLGARQLEENLVVFDLARSRVGFSTSSLHSH 390
>1t6e_X Xylanase inhibitor; two beta-barrel domain structure, hydrolase inhibitor; 1.70A {Triticum aestivum} SCOP: b.50.1.2 PDB: 1t6g_A 2b42_A 3hd8_A Length = 381 Back     alignment and structure
>3vla_A EDGP; extracellular, inhibitor, plant protein; HET: NAG; 0.95A {Daucus carota} PDB: 3vlb_A Length = 413 Back     alignment and structure
>3c9x_A Trichoderma reesei aspartic protease; aspartic proteinase, aspartyl protease, hydrolase; 1.70A {Trichoderma reesei} PDB: 3c9y_A* 3emy_A* Length = 329 Back     alignment and structure
>1oew_A Endothiapepsin; hydrolase, aspartic proteinase mechanism, atomic resolution, succinimide, anisotropic refinement; HET: SUI; 0.9A {Cryphonectria parasitica} SCOP: b.50.1.2 PDB: 1gkt_A* 1gvt_A* 1gvv_A* 1gvw_A* 1gvx_A* 1gvu_A* 1oex_A* 2jji_A* 2jjj_A* 2vs2_A* 3uri_A* 3urj_A* 3url_A* 3pww_A* 1e80_E* 1e81_E* 1e82_E* 1e5o_E* 1eed_P* 1epl_E* ... Length = 329 Back     alignment and structure
>3fv3_A SAPP1P-secreted aspartic protease 1; secreted aspartic protease, virulence factor, H; HET: STA; 1.85A {Candida parapsilosis} PDB: 3tne_A* Length = 339 Back     alignment and structure
>1j71_A Candidapepsin, aspartic proteinase; candida tropicalis aspartic protease, SAPT1, hydrolase; 1.80A {Candida tropicalis} SCOP: b.50.1.2 Length = 334 Back     alignment and structure
>3pvk_A Candidapepsin-2; hydrolase; 1.27A {Candida albicans} PDB: 1eag_A 3q70_A* 1zap_A* 2qzw_A 2h6t_A* 2h6s_A* Length = 342 Back     alignment and structure
>1ibq_A Aspergillopepsin; aspartic proteinase, hydrolase; HET: MAN; 2.14A {Aspergillus phoenicis} SCOP: b.50.1.2 Length = 325 Back     alignment and structure
>2apr_A Rhizopuspepsin; hydrolase (aspartic proteinase); 1.80A {Rhizopus microsporus var} SCOP: b.50.1.2 PDB: 3apr_E* 4apr_E* 5apr_E* 6apr_E* 1uh9_A 1uh8_A 1uh7_A Length = 325 Back     alignment and structure
>1bxo_A Protein (penicillopepsin); hydrolase, phosphonate inhibitors, macrocycle; HET: MAN PP7; 0.95A {Penicillium janthinellum} SCOP: b.50.1.2 PDB: 1apu_E* 1apv_E* 1apw_E* 1apt_E* 1bxq_A* 1ppk_E* 1ppl_E* 1ppm_E* 2wea_A* 2web_A* 2wec_A* 2wed_A* 3app_A Length = 323 Back     alignment and structure
>1izd_A Aspartic proteinase; sugar binding, acid protease, hydrolase; HET: MAN; 1.90A {Aspergillus oryzae} SCOP: b.50.1.2 PDB: 1ize_A* Length = 323 Back     alignment and structure
>2qzx_A Candidapepsin-5; aspartic proteinase, aspartyl protease, CL PAIR of basic residues, glycoprotein, protease, secreted; HET: STA; 2.50A {Candida albicans} Length = 342 Back     alignment and structure
>1dpj_A Proteinase A; proteinase A, hydrolase-hydrolase inhibitor COM; HET: BMA MAN NAG; 1.80A {Saccharomyces cerevisiae} SCOP: b.50.1.2 PDB: 1dp5_A* 1fmu_A* 1fmx_A* 1fq5_A* 1fq4_A* 1fq6_A* 1fq7_A* 1fq8_A* 2jxr_A* 1g0v_A* Length = 329 Back     alignment and structure
>1am5_A Pepsin, acid proteinase; aspartyl protease, hydrolase; 2.16A {Gadus morhua} SCOP: b.50.1.2 Length = 324 Back     alignment and structure
>2x0b_A Renin; hydrolase-hormone complex, hydrolase hormone complex, vasoconstrictor, glycoprotein, hypertension, serpins; 4.33A {Homo sapiens} Length = 383 Back     alignment and structure
>3k1w_A Renin; protease, alternative splicing, aspartyl protease, cleavage on PAIR of basic residues, disease mutation, disulfide bond, glycoprotein; HET: BFX NDG HSQ; 1.50A {Homo sapiens} PDB: 3d91_A* 3g70_A* 3g6z_A* 3own_A* 2iko_A* 1bbs_A* 1rne_A* 2bkt_A* 2bks_A* 2iku_A* 2il2_A* 2ren_A* 2v0z_C* 2v10_C* 2v11_C* 2v12_C* 2v13_A* 2v16_C* 3g72_A* 3oot_A* ... Length = 341 Back     alignment and structure
>3lpj_A Beta-secretase 1; alzheimer'S, aspartyl protease, hydrolase; HET: TLA Z75; 1.79A {Homo sapiens} PDB: 3lpi_A* 3lpk_A* 3ohf_A* 3ohh_A* 3r2f_A* 3skf_A* 3skg_A* 2hiz_A* 2p83_A* 2va7_A* 2va5_A* 2va6_A* Length = 455 Back     alignment and structure
>2bju_A Plasmepsin II; aspartic proteinase, drug design, malaria, aspartyl protease, glycoprotein, hydrolase, signal, zymogen; HET: IH4; 1.56A {Plasmodium falciparum} SCOP: b.50.1.2 PDB: 1pfz_A 1xdh_A* 1lf3_A 1w6h_A* 1w6i_A* 1lf4_A* 1lf2_A* 1lee_A* 1m43_A* 2igx_A* 1sme_A* 1me6_A* 1xe6_A* 1xe5_A* 2igy_A* 2r9b_A 3f9q_A 3qrv_A 3qs1_A* 2anl_A* ... Length = 453 Back     alignment and structure
>3qvc_A Histo-aspartic protease; HAP, plasmepsin, zymogen, hydrolase; 2.10A {Plasmodium falciparum} PDB: 3qvi_A* 3fns_A 3fnt_A* 3fnu_A* Length = 451 Back     alignment and structure
>1htr_B Gastricsin; aspartyl protease; 1.62A {Homo sapiens} SCOP: b.50.1.2 PDB: 1avf_A Length = 329 Back     alignment and structure
>1tzs_A Cathepsin E; hydrolase, aspartic protease, activation intermediate; 2.35A {Homo sapiens} Length = 351 Back     alignment and structure
>3psg_A Pepsinogen; hydrolase(acid proteinase zymogen); 1.65A {Sus scrofa} SCOP: b.50.1.2 PDB: 2psg_A 4pep_A* 3pep_A* 1f34_A* 1psa_A* 1yx9_A 5pep_A 1flh_A 1qrp_E* 1psn_A* 1pso_E* 3utl_A Length = 370 Back     alignment and structure
>2ewy_A Beta-secretase 2; BACE2, aspartic protease, hydrolase; HET: DBO; 3.10A {Homo sapiens} Length = 383 Back     alignment and structure
>1mpp_A Pepsin; hydrolase(acid proteinase); 2.00A {Rhizomucor pusillus} SCOP: b.50.1.2 PDB: 2asi_A* 2rmp_A* Length = 361 Back     alignment and structure
>3cms_A Chymosin B; hydrolase, acid proteinase; 2.00A {Bos taurus} SCOP: b.50.1.2 PDB: 4cms_A 1czi_E* 1cms_A Length = 323 Back     alignment and structure
>2qp8_A Beta-secretase 1; BACE1, protease, alternative splicing, aspartyl protease, glycoprotein, hydrolase, membrane, transmembrane, zymogen; HET: TAR SC7; 1.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 2qk5_A* 2qmf_A* 2qmg_A* 2qmd_A* 4djx_A* 3l59_A* 3l5b_A* 3l5c_A* 3l58_A* 3l5d_A* 3l5f_A* 4dju_A* 4djv_A* 4djw_A* 3l5e_A* 4djy_A* 2zhv_A 2zhs_A 2zhr_A 2zhu_A ... Length = 395 Back     alignment and structure
>1miq_A Plasmepsin; aspartic proteinase zymogen, domain opening, hydrolase; 2.50A {Plasmodium vivax} SCOP: b.50.1.2 PDB: 1ls5_A* Length = 375 Back     alignment and structure
>1qdm_A Prophytepsin; aspartic proteinases, saposin-like domain, zymogen structure, hydrolase; 2.30A {Hordeum vulgare} SCOP: a.64.1.2 b.50.1.2 Length = 478 Back     alignment and structure
>1yg9_A Aspartic protease BLA G 2; allegren, hydrolase, allergen; HET: NAG; 1.30A {Blattella germanica} PDB: 2nr6_A* 3liz_A* Length = 330 Back     alignment and structure
>1b5f_A Protein (cardosin A); hydrolase, aspartic proteinase; HET: NAG FUC BMA MAN; 1.72A {Cynara cardunculus} SCOP: b.50.1.2 Length = 239 Back     alignment and structure
>1wkr_A Polyporopepsin; hydrolase, hydrolase-hydrolase inhibitor complex; HET: STA; 1.30A {Irpex lacteus} SCOP: b.50.1.2 Length = 340 Back     alignment and structure
>1lya_A Cathepsin D; lysosomal aspartic protease; HET: NAG BMA MAN; 2.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 1lyb_A* 1lyw_A* Length = 97 Back     alignment and structure
>1lya_B Cathepsin D; lysosomal aspartic protease; HET: NAG BMA MAN; 2.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 1lyb_B* 1lyw_B* Length = 241 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query423
3psg_A370 Pepsinogen; hydrolase(acid proteinase zymogen); 1. 100.0
2x0b_A383 Renin; hydrolase-hormone complex, hydrolase hormon 100.0
3vla_A413 EDGP; extracellular, inhibitor, plant protein; HET 100.0
1tzs_A351 Cathepsin E; hydrolase, aspartic protease, activat 100.0
2apr_A325 Rhizopuspepsin; hydrolase (aspartic proteinase); 1 100.0
3cms_A323 Chymosin B; hydrolase, acid proteinase; 2.00A {Bos 100.0
1am5_A324 Pepsin, acid proteinase; aspartyl protease, hydrol 100.0
1dpj_A329 Proteinase A; proteinase A, hydrolase-hydrolase in 100.0
3c9x_A329 Trichoderma reesei aspartic protease; aspartic pro 100.0
4aa9_A320 Chymosin; hydrolase, aspartic peptidase, rennet; H 100.0
1mpp_A361 Pepsin; hydrolase(acid proteinase); 2.00A {Rhizomu 100.0
1j71_A334 Candidapepsin, aspartic proteinase; candida tropic 100.0
1oew_A329 Endothiapepsin; hydrolase, aspartic proteinase mec 100.0
2qzx_A342 Candidapepsin-5; aspartic proteinase, aspartyl pro 100.0
1htr_B329 Gastricsin; aspartyl protease; 1.62A {Homo sapiens 100.0
1qdm_A478 Prophytepsin; aspartic proteinases, saposin-like d 100.0
3aup_A403 SBG7S, BG, basic 7S globulin; pepsin-like fold, pl 100.0
3pvk_A342 Candidapepsin-2; hydrolase; 1.27A {Candida albican 100.0
1miq_A375 Plasmepsin; aspartic proteinase zymogen, domain op 100.0
2bju_A453 Plasmepsin II; aspartic proteinase, drug design, m 100.0
3k1w_A341 Renin; protease, alternative splicing, aspartyl pr 100.0
3fv3_A339 SAPP1P-secreted aspartic protease 1; secreted aspa 100.0
3qvc_A451 Histo-aspartic protease; HAP, plasmepsin, zymogen, 100.0
1yg9_A330 Aspartic protease BLA G 2; allegren, hydrolase, al 100.0
1ibq_A325 Aspergillopepsin; aspartic proteinase, hydrolase; 100.0
1izd_A323 Aspartic proteinase; sugar binding, acid protease, 100.0
1bxo_A323 Protein (penicillopepsin); hydrolase, phosphonate 100.0
2ewy_A383 Beta-secretase 2; BACE2, aspartic protease, hydrol 100.0
3lpj_A455 Beta-secretase 1; alzheimer'S, aspartyl protease, 100.0
2qp8_A395 Beta-secretase 1; BACE1, protease, alternative spl 100.0
3vf3_A402 Beta-secretase 1; structure-based drug design, hyd 100.0
1wkr_A340 Polyporopepsin; hydrolase, hydrolase-hydrolase inh 100.0
1t6e_X381 Xylanase inhibitor; two beta-barrel domain structu 100.0
1b5f_A239 Protein (cardosin A); hydrolase, aspartic proteina 100.0
1lya_B241 Cathepsin D; lysosomal aspartic protease; HET: NAG 100.0
1lya_A97 Cathepsin D; lysosomal aspartic protease; HET: NAG 99.89
1b5f_B87 Protein (cardosin A); hydrolase, aspartic proteina 99.73
3s8i_A148 Protein DDI1 homolog 1; protease, structural genom 94.5
2i1a_A148 DNA damage-inducible protein DDI1; acid protease f 94.25
2hs1_A99 HIV-1 protease; ultra-high resolution active site 88.38
1fmb_A104 EIAV protease; hydrolase (acid proteinase), RNA-di 87.69
3ec0_A99 Protease; HIV-2, inhibitor, hydrolase; HET: GRL; 1 86.44
3liy_A116 Protease; hydrolase, hydrolase-hydrolase inhibitor 84.88
2i1a_A148 DNA damage-inducible protein DDI1; acid protease f 81.67
2hah_A116 Protease, retropepsin; retroviral, aspartyl, hydro 81.28
>3psg_A Pepsinogen; hydrolase(acid proteinase zymogen); 1.65A {Sus scrofa} SCOP: b.50.1.2 PDB: 2psg_A 4pep_A* 3pep_A* 1f34_A* 1psa_A* 1yx9_A 5pep_A 1flh_A 1qrp_E* 1psn_A* 1pso_E* 3utl_A Back     alignment and structure
Probab=100.00  E-value=4.5e-61  Score=469.88  Aligned_cols=300  Identities=24%  Similarity=0.441  Sum_probs=254.9

Q ss_pred             cceeecCCccEEEEEEecCCCceEEEEEEcCCCceeeeCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCccccCCCCCC
Q 014537           81 QADIIPNNANYLIRISIGTPPTERLAVADTGSDLIWTQCEPCPPSQCYMQDSPLFDPKMSSTYKSLPCSSSQCASLNQKS  160 (423)
Q Consensus        81 ~~~~~~~~~~Y~~~i~vGtP~q~~~~~~DTGSs~~WV~~~~c~~~~C~~~~~~~y~p~~Sst~~~~~c~~~~C~~~~~~~  160 (423)
                      .+..++.+.+|+++|+||||||+|.|++||||+++||+|..|....|  ..++.|||++|+||+...             
T Consensus        48 ~~l~n~~d~~Y~~~i~iGTPpQ~~~v~~DTGSs~lWV~s~~C~~~~C--~~~~~y~~~~SsT~~~~~-------------  112 (370)
T 3psg_A           48 EPLENYLDTEYFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYCSSLAC--SDHNQFNPDDSSTFEATS-------------  112 (370)
T ss_dssp             CTTGGGTTCCEEEEEEETTTTEEEEEEEETTCCCEEEEBTTCCSGGG--TTSCCBCGGGCTTCEEEE-------------
T ss_pred             ecceeccCCEEEEEEEEcCCCCEEEEEEeCCCCccEEECCCCCCccc--CCCCCCCCccCcCcEECC-------------
Confidence            44556789999999999999999999999999999999999984456  678999999999999987             


Q ss_pred             CCCCCceeeEEcCCCCeeeEEEEEEEEEecCCCCCceecCceEEEeEEecCCC-C-CCCcceeeecCCCCCc--------
Q 014537          161 CSGVNCQYSVSYGDGSFSNGNLATETVTLGSTTGQAVALPGITFGCGTNNGGL-F-NSKTTGIVGLGGGDIS--------  230 (423)
Q Consensus       161 c~~~~~~~~~~Yg~g~~~~G~~~~D~v~ig~~~~~~~~~~~~~fg~~~~~~~~-~-~~~~~GilGLg~~~~s--------  230 (423)
                           +.|.+.|++|+. .|.+++|+|+|++.     .++++.||++....+. | ...+|||||||++.++        
T Consensus       113 -----~~~~i~Yg~Gs~-~G~~~~Dtv~ig~~-----~v~~~~Fg~a~~~~~~~~~~~~~dGIlGLg~~~~s~~~~~~~~  181 (370)
T 3psg_A          113 -----QELSITYGTGSM-TGILGYDTVQVGGI-----SDTNQIFGLSETEPGSFLYYAPFDGILGLAYPSISASGATPVF  181 (370)
T ss_dssp             -----EEEEEESSSCEE-EEEEEEEEEEETTE-----EEEEEEEEEECSCCCGGGGGCSCSEEEECSCGGGCGGGCCCHH
T ss_pred             -----cEEEEEeCCceE-EEEEEEEEEeeCCc-----ccCCeEEEEEEeecccccccCCccceeccCCccccccCCCCHH
Confidence                 999999999985 59999999999987     9999999999988763 4 5778999999998765        


Q ss_pred             --hhhhhhhcccCceEEEeccCC--CceeeeCC--CCccCCCCeEEeeccCCCCceEEEeEEEEeccEEec-cCCCcEEE
Q 014537          231 --LISQMRTTIAGKFSYCLVPVS--STKINFGT--NGIVSGPGVVSTPLTKAKTFYVLTIDAISVGNQRLG-VSTPDIVI  303 (423)
Q Consensus       231 --l~~ql~~i~~~~Fs~~l~~~~--~g~l~fGg--~~~~~g~~~~~~p~~~~~~~w~v~l~~i~v~~~~~~-~~~~~~ii  303 (423)
                        +++| +.+.+++||+||.+..  .|.|+|||  ..++.|+ ++|+|+. ...+|.|+|++|+|+++.+. ...+.+||
T Consensus       182 ~~l~~q-g~i~~~~FS~~L~~~~~~~G~l~fGg~D~~~y~g~-l~~~pv~-~~~~w~v~l~~i~v~g~~~~~~~~~~aii  258 (370)
T 3psg_A          182 DNLWDQ-GLVSQDLFSVYLSSNDDSGSVVLLGGIDSSYYTGS-LNWVPVS-VEGYWQITLDSITMDGETIACSGGCQAIV  258 (370)
T ss_dssp             HHHHHT-TCSSSSEEEEEEC-----CEEEEETCCCGGGBSSC-CEEEECS-EETTEEEEECEEESSSSEEECTTCEEEEE
T ss_pred             HHHHHC-CCCCCCEEEEEEccCCCCCeEEEEEeeChHhcCCc-ceeeccc-ccceeEEEEeEEEECCEEEecCCCceEEE
Confidence              3344 5678899999999863  29999999  4566665 9999999 77899999999999998763 35679999


Q ss_pred             ecCCcceecChhHHHHHHHHHHhhhccCcCCCCCCCcccccccCCCCCCCeEEEEEeCcEEEeCCCceEEEeCCCeEEEE
Q 014537          304 DSGTTLTFLPQGYNSNLLSVMSSMIEAQPVADPTGSLELCYSFNSLSQVPEVTIHFRGADVKLSRSNFFVKVSEDIVCSV  383 (423)
Q Consensus       304 DsGt~~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~P~i~~~f~g~~~~l~~~~~~~~~~~~~~C~~  383 (423)
                      ||||+++++|.+++++|.+++.+..    ...+.+.+ +|+...   .+|+|+|+|+|++|+|++++|+++  .++.|++
T Consensus       259 DTGTs~~~lP~~~~~~i~~~i~a~~----~~~g~~~v-~C~~~~---~lP~i~f~~~g~~~~l~~~~yi~~--~~~~C~~  328 (370)
T 3psg_A          259 DTGTSLLTGPTSAIANIQSDIGASE----NSDGEMVI-SCSSID---SLPDIVFTIDGVQYPLSPSAYILQ--DDDSCTS  328 (370)
T ss_dssp             CTTCCSEEEEHHHHHHHHHHTTCEE----CTTCCEEC-CGGGGG---GCCCEEEEETTEEEEECHHHHEEE--CSSCEEE
T ss_pred             cCCCCcEECCHHHHHHHHHHhCCcc----cCCCcEEE-ECCCcc---cCCcEEEEECCEEEEECHHHhccc--CCCEEEE
Confidence            9999999999999999988886542    22344545 498764   689999999999999999999998  3346997


Q ss_pred             -EEecC-----CCcceechhhhcceEEEEECCCCEEEEeeCC
Q 014537          384 -FKGIT-----NSVPIYGNIMQTNFLVGYDIEQQTVSFKPTD  419 (423)
Q Consensus       384 -i~~~~-----~~~~ilG~~fl~~~y~vfD~~~~~igfa~~~  419 (423)
                       |...+     +..||||++|||++|+|||++++|||||+++
T Consensus       329 ~~~~~~~~~~~~~~~ILG~~Fl~~~y~vfD~~~~riGfA~a~  370 (370)
T 3psg_A          329 GFEGMDVPTSSGELWILGDVFIRQYYTVFDRANNKVGLAPVA  370 (370)
T ss_dssp             SEEEECCCTTSCCEEEECHHHHTTEEEEEETTTTEEEEEEBC
T ss_pred             EEEeCCCCCCCCCcEEeChHHhcceEEEEECCCCEEEEEEcC
Confidence             77643     2369999999999999999999999999985
>2x0b_A Renin; hydrolase-hormone complex, hydrolase hormone complex, vasoconstrictor, glycoprotein, hypertension, serpins; 4.33A {Homo sapiens} Back     alignment and structure
>3vla_A EDGP; extracellular, inhibitor, plant protein; HET: NAG; 0.95A {Daucus carota} PDB: 3vlb_A Back     alignment and structure
>1tzs_A Cathepsin E; hydrolase, aspartic protease, activation intermediate; 2.35A {Homo sapiens} Back     alignment and structure
>2apr_A Rhizopuspepsin; hydrolase (aspartic proteinase); 1.80A {Rhizopus microsporus var} SCOP: b.50.1.2 PDB: 3apr_E* 4apr_E* 5apr_E* 6apr_E* 1uh9_A 1uh8_A 1uh7_A Back     alignment and structure
>3cms_A Chymosin B; hydrolase, acid proteinase; 2.00A {Bos taurus} SCOP: b.50.1.2 PDB: 4cms_A 1czi_E* 1cms_A Back     alignment and structure
>1am5_A Pepsin, acid proteinase; aspartyl protease, hydrolase; 2.16A {Gadus morhua} SCOP: b.50.1.2 Back     alignment and structure
>1dpj_A Proteinase A; proteinase A, hydrolase-hydrolase inhibitor COM; HET: BMA MAN NAG; 1.80A {Saccharomyces cerevisiae} SCOP: b.50.1.2 PDB: 1dp5_A* 1fmu_A* 1fmx_A* 1fq5_A* 1fq4_A* 1fq6_A* 1fq7_A* 1fq8_A* 2jxr_A* 1g0v_A* Back     alignment and structure
>3c9x_A Trichoderma reesei aspartic protease; aspartic proteinase, aspartyl protease, hydrolase; 1.70A {Trichoderma reesei} PDB: 3c9y_A* 3emy_A* Back     alignment and structure
>4aa9_A Chymosin; hydrolase, aspartic peptidase, rennet; HET: NAG; 1.60A {Camelus dromedarius} PDB: 4aa8_A 1czi_E* 1cms_A 4cms_A 3cms_A Back     alignment and structure
>1mpp_A Pepsin; hydrolase(acid proteinase); 2.00A {Rhizomucor pusillus} SCOP: b.50.1.2 PDB: 2asi_A* 2rmp_A* Back     alignment and structure
>1j71_A Candidapepsin, aspartic proteinase; candida tropicalis aspartic protease, SAPT1, hydrolase; 1.80A {Candida tropicalis} SCOP: b.50.1.2 Back     alignment and structure
>1oew_A Endothiapepsin; hydrolase, aspartic proteinase mechanism, atomic resolution, succinimide, anisotropic refinement; HET: SUI; 0.9A {Cryphonectria parasitica} SCOP: b.50.1.2 PDB: 1gkt_A* 1gvt_A* 1gvv_A* 1gvw_A* 1gvx_A* 1gvu_A* 1oex_A* 2jji_A* 2jjj_A* 2vs2_A* 3uri_A* 3urj_A* 3url_A* 3pww_A* 1e80_E* 1e81_E* 1e82_E* 1e5o_E* 1eed_P* 1epl_E* ... Back     alignment and structure
>2qzx_A Candidapepsin-5; aspartic proteinase, aspartyl protease, CL PAIR of basic residues, glycoprotein, protease, secreted; HET: STA; 2.50A {Candida albicans} Back     alignment and structure
>1htr_B Gastricsin; aspartyl protease; 1.62A {Homo sapiens} SCOP: b.50.1.2 PDB: 1avf_A Back     alignment and structure
>1qdm_A Prophytepsin; aspartic proteinases, saposin-like domain, zymogen structure, hydrolase; 2.30A {Hordeum vulgare} SCOP: a.64.1.2 b.50.1.2 Back     alignment and structure
>3aup_A SBG7S, BG, basic 7S globulin; pepsin-like fold, plant protein; 1.91A {Glycine max} Back     alignment and structure
>3pvk_A Candidapepsin-2; hydrolase; 1.27A {Candida albicans} SCOP: b.50.1.2 PDB: 1eag_A 3q70_A* 1zap_A* 2qzw_A 2h6t_A* 2h6s_A* Back     alignment and structure
>1miq_A Plasmepsin; aspartic proteinase zymogen, domain opening, hydrolase; 2.50A {Plasmodium vivax} SCOP: b.50.1.2 PDB: 1ls5_A* Back     alignment and structure
>2bju_A Plasmepsin II; aspartic proteinase, drug design, malaria, aspartyl protease, glycoprotein, hydrolase, signal, zymogen; HET: IH4; 1.56A {Plasmodium falciparum} SCOP: b.50.1.2 PDB: 1pfz_A 1xdh_A* 1lf3_A 1w6h_A* 1w6i_A* 1lf4_A* 1lf2_A* 1lee_A* 1m43_A* 2igx_A* 1sme_A* 1me6_A* 1xe6_A* 1xe5_A* 2igy_A* 2r9b_A 3f9q_A 3qrv_A 3qs1_A* 2anl_A* ... Back     alignment and structure
>3k1w_A Renin; protease, alternative splicing, aspartyl protease, cleavage on PAIR of basic residues, disease mutation, disulfide bond, glycoprotein; HET: BFX NDG HSQ; 1.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 3d91_A* 3g70_A* 3g6z_A* 3own_A* 2iko_A* 1bbs_A* 1rne_A* 2bkt_A* 2bks_A* 2iku_A* 2il2_A* 2ren_A* 2v0z_C* 2v10_C* 2v11_C* 2v12_C* 2v13_A* 2v16_C* 3g72_A* 3oot_A* ... Back     alignment and structure
>3fv3_A SAPP1P-secreted aspartic protease 1; secreted aspartic protease, virulence factor, H; HET: STA; 1.85A {Candida parapsilosis} SCOP: b.50.1.0 PDB: 3tne_A* Back     alignment and structure
>3qvc_A Histo-aspartic protease; HAP, plasmepsin, zymogen, hydrolase; 2.10A {Plasmodium falciparum} PDB: 3qvi_A* 3fns_A 3fnt_A* 3fnu_A* Back     alignment and structure
>1yg9_A Aspartic protease BLA G 2; allegren, hydrolase, allergen; HET: NAG; 1.30A {Blattella germanica} PDB: 2nr6_A* 3liz_A* Back     alignment and structure
>1ibq_A Aspergillopepsin; aspartic proteinase, hydrolase; HET: MAN; 2.14A {Aspergillus phoenicis} SCOP: b.50.1.2 Back     alignment and structure
>1izd_A Aspartic proteinase; sugar binding, acid protease, hydrolase; HET: MAN; 1.90A {Aspergillus oryzae} SCOP: b.50.1.2 PDB: 1ize_A* Back     alignment and structure
>1bxo_A Protein (penicillopepsin); hydrolase, phosphonate inhibitors, macrocycle; HET: MAN PP7; 0.95A {Penicillium janthinellum} SCOP: b.50.1.2 PDB: 1apu_E* 1apv_E* 1apw_E* 1apt_E* 1bxq_A* 1ppk_E* 1ppl_E* 1ppm_E* 2wea_A* 2web_A* 2wec_A* 2wed_A* 3app_A Back     alignment and structure
>2ewy_A Beta-secretase 2; BACE2, aspartic protease, hydrolase; HET: DBO; 3.10A {Homo sapiens} Back     alignment and structure
>3lpj_A Beta-secretase 1; alzheimer'S, aspartyl protease, hydrolase; HET: TLA Z75; 1.79A {Homo sapiens} PDB: 3lpi_A* 3lpk_A* 3ohf_A* 3ohh_A* 3r2f_A* 3skf_A* 3skg_A* 4fse_A* 2hiz_A* 2p83_A* 2va7_A* 2va5_A* 2va6_A* Back     alignment and structure
>2qp8_A Beta-secretase 1; BACE1, protease, alternative splicing, aspartyl protease, glycoprotein, hydrolase, membrane, transmembrane, zymogen; HET: TAR SC7; 1.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 2qk5_A* 2qmf_A* 2qmg_A* 2qmd_A* 4djx_A* 3l59_A* 3l5b_A* 3l5c_A* 3l58_A* 3l5d_A* 3l5f_A* 4dju_A* 4djv_A* 4djw_A* 3l5e_A* 4djy_A* 2zhv_A 2zhs_A 2zhr_A 2zhu_A ... Back     alignment and structure
>3vf3_A Beta-secretase 1; structure-based drug design, hydrolase-hydrolase inhibitor C; HET: 0GS; 1.48A {Homo sapiens} PDB: 2f3e_A* 2f3f_A* 1ym2_A* 3dv1_A* 3dv5_A* 3k5c_A* 3k5f_A* 3k5g_A* 3pi5_A* 3qbh_A* 3duy_A* 3veu_A* 3vg1_A* 4d83_A* 4d88_A* 4d89_A* 4d8c_A* 3msk_A* 3k5d_A* 1ym4_A* ... Back     alignment and structure
>1wkr_A Polyporopepsin; hydrolase, hydrolase-hydrolase inhibitor complex; HET: STA; 1.30A {Irpex lacteus} SCOP: b.50.1.2 Back     alignment and structure
>1t6e_X Xylanase inhibitor; two beta-barrel domain structure, hydrolase inhibitor; 1.70A {Triticum aestivum} SCOP: b.50.1.2 PDB: 1t6g_A 2b42_A 3hd8_A Back     alignment and structure
>1b5f_A Protein (cardosin A); hydrolase, aspartic proteinase; HET: NAG FUC BMA MAN; 1.72A {Cynara cardunculus} SCOP: b.50.1.2 Back     alignment and structure
>1lya_B Cathepsin D; lysosomal aspartic protease; HET: NAG BMA MAN; 2.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 1lyb_B* 1lyw_B* Back     alignment and structure
>1lya_A Cathepsin D; lysosomal aspartic protease; HET: NAG BMA MAN; 2.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 1lyb_A* 1lyw_A* Back     alignment and structure
>1b5f_B Protein (cardosin A); hydrolase, aspartic proteinase; HET: NAG FUC BMA MAN; 1.72A {Cynara cardunculus} SCOP: b.50.1.2 Back     alignment and structure
>3s8i_A Protein DDI1 homolog 1; protease, structural genomics, structural genomics consortiu retropepsin-like domain, protein turnover, hydrolase; 1.70A {Homo sapiens} Back     alignment and structure
>2i1a_A DNA damage-inducible protein DDI1; acid protease fold, dimer, retroviral protease domain, protein turnover; HET: DNA; 2.30A {Saccharomyces cerevisiae} Back     alignment and structure
>2hs1_A HIV-1 protease; ultra-high resolution active site surface binding site, HYDR; HET: 017; 0.84A {Human immunodeficiency virus 1} PDB: 3nu4_A* 3tl9_A* 3tkw_A* 3tkg_A* 3ndu_A* 3ndt_A* 3k4v_A* 3a2o_A* 1fgc_C* 2a1e_A* 2aod_A* 2aoi_A* 2aoj_A* 2hb3_A* 2ien_A* 1sdt_A* 2z4o_A* 2zye_A* 2nmw_A* 3b7v_A* ... Back     alignment and structure
>1fmb_A EIAV protease; hydrolase (acid proteinase), RNA-directed DNA polymerase, AS protease, endonuclease, polyprotein; HET: HYB; 1.80A {Equine infectious anemia virus} SCOP: b.50.1.1 PDB: 2fmb_A* Back     alignment and structure
>3ec0_A Protease; HIV-2, inhibitor, hydrolase; HET: GRL; 1.18A {Human immunodeficiency virus type 2} SCOP: b.50.1.1 PDB: 1hii_A* 1hsi_A 1hsh_A* 1idb_A* 1jld_A* 2mip_A 1ida_A* 3ebz_A* 3ecg_A* 3s45_A* 4upj_A* 1ivq_A* 1ivp_A 2hpf_A 3upj_A* 2hpe_A* 5upj_A* 6upj_A* 1sip_A 1tcw_A* ... Back     alignment and structure
>3liy_A Protease; hydrolase, hydrolase-hydrolase inhibitor complex; HET: STA; 1.86A {Human t-lymphotropic virus 1} PDB: 2b7f_A* 3liq_A* 3lit_A* 3liv_A* 3lix_A* 3lin_A* Back     alignment and structure
>2i1a_A DNA damage-inducible protein DDI1; acid protease fold, dimer, retroviral protease domain, protein turnover; HET: DNA; 2.30A {Saccharomyces cerevisiae} Back     alignment and structure
>2hah_A Protease, retropepsin; retroviral, aspartyl, hydrolase-hydrolase complex; HET: 3TL; 1.70A {Feline immunodeficiency virus} PDB: 3ogp_A* 3ogq_A* 2fiv_A* 6fiv_A* 3fiv_A* 5fiv_A* 4fiv_A* 1fiv_A* 1b11_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 423
d1t6ex_381 b.50.1.2 (X:) Xylanase inhibitor TAXI-I {Wheat (Tr 4e-39
d2apra_325 b.50.1.2 (A:) Acid protease {Bread mold (Rhizopus 6e-35
d1dpja_329 b.50.1.2 (A:) Acid protease {Baker's yeast (Saccha 3e-34
g1lya.1338 b.50.1.2 (A:,B:) Cathepsin D {Human (Homo sapiens) 3e-31
d1eaga_342 b.50.1.2 (A:) Acid protease {Yeast (Candida albica 3e-30
d3cmsa_323 b.50.1.2 (A:) Chymosin (synonym: renin) {Cow (Bos 1e-29
g1htr.1372 b.50.1.2 (P:,B:) Pepsin(ogen) {Human (Homo sapiens 2e-29
d1miqa_373 b.50.1.2 (A:) Plasmepsin (a hemoglobin-degrading e 2e-29
d1j71a_334 b.50.1.2 (A:) Acid protease {Yeast (Candida tropic 3e-29
d2qp8a1387 b.50.1.2 (A:60-446) beta-secretase (memapsin) {Hum 2e-27
g1b5f.1326 b.50.1.2 (A:,B:) Plant acid proteinase, phytepsin 4e-27
d1smra_335 b.50.1.2 (A:) Chymosin (synonym: renin) {Mouse (Mu 8e-27
d1oewa_330 b.50.1.2 (A:) Endothiapepsin {Chestnut blight fung 8e-27
d1am5a_324 b.50.1.2 (A:) Pepsin(ogen) {Atlantic cod (Gadus mo 1e-26
d1izea_323 b.50.1.2 (A:) Acid protease {Fungus (Aspergillus o 2e-26
d3psga_370 b.50.1.2 (A:) Pepsin(ogen) {Pig (Sus scrofa) [TaxI 3e-26
d1qdma2337 b.50.1.2 (A:2-247,A:248-338) Plant acid proteinase 6e-26
d2bjua1329 b.50.1.2 (A:1-329) Plasmepsin (a hemoglobin-degrad 2e-25
d1bxoa_323 b.50.1.2 (A:) Acid protease {Fungus (Penicillium j 4e-25
d1mppa_357 b.50.1.2 (A:) Pepsin {Mucor pusillus [TaxId: 4840] 2e-24
d1hrna_337 b.50.1.2 (A:) Chymosin (synonym: renin) {Human (Ho 2e-24
d1wkra_340 b.50.1.2 (A:) Acid protease {Irpex lacteus (Polypo 2e-18
>d1t6ex_ b.50.1.2 (X:) Xylanase inhibitor TAXI-I {Wheat (Triticum aestivum) [TaxId: 4565]} Length = 381 Back     information, alignment and structure

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Xylanase inhibitor TAXI-I
species: Wheat (Triticum aestivum) [TaxId: 4565]

 Score =  142 bits (358), Expect = 4e-39
 Identities = 70/379 (18%), Positives = 128/379 (33%), Gaps = 53/379 (13%)

Query: 86  PNNANYLIRISIGTPPTERLAVADTGSDLIWTQCEPCPPSQCYMQDSPLFDPKMSSTYKS 145
           P  + Y I    G        V D    L+W+ C+   P       SP     +++ Y +
Sbjct: 11  PATSLYTIPFHDGAS-----LVLDVAGPLVWSTCDGGQPPAEIPCSSP--TCLLANAYPA 63

Query: 146 LPCSSSQCASLNQKSCSGVNCQYSVSYGDGSFSNGNLATETVTLGSTTGQA---VALPGI 202
             C +  C S            Y  +   G+ + G+L+       +T G         G+
Sbjct: 64  PGCPAPSCGS---DKHDKPCTAYPYNPVSGACAAGSLSHTRFVANTTDGSKPVSKVNVGV 120

Query: 203 TFGCGTNNGGLF-NSKTTGIVGLGGGDISLISQM--RTTIAGKFSYCLVPVSSTKINFGT 259
              C  +         +TG+ GL    ++L +Q+     +A +F  CL         FG 
Sbjct: 121 LAACAPSKLLASLPRGSTGVAGLANSGLALPAQVASAQKVANRFLLCLPTGGPGVAIFGG 180

Query: 260 NGIVSG---PGVVSTPLTKAK--TFYVLTIDAISVGNQRLGV-----STPDIVIDSGTTL 309
             +        +  TPL        + ++  +I VG+ R+ V     +T  +++ +    
Sbjct: 181 GPVPWPQFTQSMPYTPLVTKGGSPAHYISARSIVVGDTRVPVPEGALATGGVMLSTRLPY 240

Query: 310 TFLPQGYNSNLLSVMSSMIEAQP--------VADPTGSLELCYSFNSLS------QVPEV 355
             L       L+   +  + AQ           +      +CY   +L        VP V
Sbjct: 241 VLLRPDVYRPLMDAFTKALAAQHANGAPVARAVEAVAPFGVCYDTKTLGNNLGGYAVPNV 300

Query: 356 TIHFR-GADVKLSRSNFFVKVSEDIVCSVFKGITNSVP--------IYGNIMQTNFLVGY 406
            +    G+D  ++  N  V V +   C  F  +             I G     +F++ +
Sbjct: 301 QLGLDGGSDWTMTGKNSMVDVKQGTACVAFVEMKGVAAGDGRAPAVILGGAQMEDFVLDF 360

Query: 407 DIEQQTVSF----KPTDCT 421
           D+E++ + F      T C 
Sbjct: 361 DMEKKRLGFSRLPHFTGCG 379
>d2apra_ b.50.1.2 (A:) Acid protease {Bread mold (Rhizopus chinensis) [TaxId: 4843]} Length = 325 Back     information, alignment and structure
>d1dpja_ b.50.1.2 (A:) Acid protease {Baker's yeast (Saccharomyces cerevisiae), proteinase A [TaxId: 4932]} Length = 329 Back     information, alignment and structure
>d1eaga_ b.50.1.2 (A:) Acid protease {Yeast (Candida albicans) [TaxId: 5476]} Length = 342 Back     information, alignment and structure
>d3cmsa_ b.50.1.2 (A:) Chymosin (synonym: renin) {Cow (Bos taurus) [TaxId: 9913]} Length = 323 Back     information, alignment and structure
>d1miqa_ b.50.1.2 (A:) Plasmepsin (a hemoglobin-degrading enzyme) {Plasmodium vivax [TaxId: 5855]} Length = 373 Back     information, alignment and structure
>d1j71a_ b.50.1.2 (A:) Acid protease {Yeast (Candida tropicalis) [TaxId: 5482]} Length = 334 Back     information, alignment and structure
>d2qp8a1 b.50.1.2 (A:60-446) beta-secretase (memapsin) {Human (Homo sapiens) [TaxId: 9606]} Length = 387 Back     information, alignment and structure
>d1smra_ b.50.1.2 (A:) Chymosin (synonym: renin) {Mouse (Mus musculus) [TaxId: 10090]} Length = 335 Back     information, alignment and structure
>d1am5a_ b.50.1.2 (A:) Pepsin(ogen) {Atlantic cod (Gadus morhua) [TaxId: 8049]} Length = 324 Back     information, alignment and structure
>d1izea_ b.50.1.2 (A:) Acid protease {Fungus (Aspergillus oryzae) [TaxId: 5062]} Length = 323 Back     information, alignment and structure
>d3psga_ b.50.1.2 (A:) Pepsin(ogen) {Pig (Sus scrofa) [TaxId: 9823]} Length = 370 Back     information, alignment and structure
>d1qdma2 b.50.1.2 (A:2-247,A:248-338) Plant acid proteinase, phytepsin {Barley (Hordeum vulgare) [TaxId: 4513]} Length = 337 Back     information, alignment and structure
>d2bjua1 b.50.1.2 (A:1-329) Plasmepsin (a hemoglobin-degrading enzyme) {Plasmodium falciparum, plasmepsin II [TaxId: 5833]} Length = 329 Back     information, alignment and structure
>d1bxoa_ b.50.1.2 (A:) Acid protease {Fungus (Penicillium janthinellum), penicillopepsin [TaxId: 5079]} Length = 323 Back     information, alignment and structure
>d1mppa_ b.50.1.2 (A:) Pepsin {Mucor pusillus [TaxId: 4840]} Length = 357 Back     information, alignment and structure
>d1hrna_ b.50.1.2 (A:) Chymosin (synonym: renin) {Human (Homo sapiens) [TaxId: 9606]} Length = 337 Back     information, alignment and structure
>d1wkra_ b.50.1.2 (A:) Acid protease {Irpex lacteus (Polyporus tulipiferae), Polyporopepsin [TaxId: 5319]} Length = 340 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query423
d3psga_370 Pepsin(ogen) {Pig (Sus scrofa) [TaxId: 9823]} 100.0
g1htr.1372 Pepsin(ogen) {Human (Homo sapiens), progastricsin 100.0
d2apra_325 Acid protease {Bread mold (Rhizopus chinensis) [Ta 100.0
d1oewa_330 Endothiapepsin {Chestnut blight fungus (Endothia p 100.0
d1j71a_334 Acid protease {Yeast (Candida tropicalis) [TaxId: 100.0
d1dpja_329 Acid protease {Baker's yeast (Saccharomyces cerevi 100.0
d1miqa_373 Plasmepsin (a hemoglobin-degrading enzyme) {Plasmo 100.0
d1smra_335 Chymosin (synonym: renin) {Mouse (Mus musculus) [T 100.0
d1am5a_324 Pepsin(ogen) {Atlantic cod (Gadus morhua) [TaxId: 100.0
d1eaga_342 Acid protease {Yeast (Candida albicans) [TaxId: 54 100.0
d1hrna_337 Chymosin (synonym: renin) {Human (Homo sapiens) [T 100.0
d1mppa_357 Pepsin {Mucor pusillus [TaxId: 4840]} 100.0
d1izea_323 Acid protease {Fungus (Aspergillus oryzae) [TaxId: 100.0
g1lya.1338 Cathepsin D {Human (Homo sapiens) [TaxId: 9606]} 100.0
d1bxoa_323 Acid protease {Fungus (Penicillium janthinellum), 100.0
d2bjua1329 Plasmepsin (a hemoglobin-degrading enzyme) {Plasmo 100.0
d2qp8a1387 beta-secretase (memapsin) {Human (Homo sapiens) [T 100.0
d1wkra_340 Acid protease {Irpex lacteus (Polyporus tulipifera 100.0
d1qdma2337 Plant acid proteinase, phytepsin {Barley (Hordeum 100.0
d3cmsa_323 Chymosin (synonym: renin) {Cow (Bos taurus) [TaxId 100.0
g1b5f.1326 Plant acid proteinase, phytepsin {Cynara carduncul 100.0
d1t6ex_381 Xylanase inhibitor TAXI-I {Wheat (Triticum aestivu 100.0
d2nmza199 Human immunodeficiency virus type 1 protease {Huma 85.71
d4fiva_113 Feline immunodeficiency virus (FIV) protease {Feli 84.68
d3ecga199 Human immunodeficiency virus type 2 (HIV-2) protea 84.01
d2fmba_104 EIAV protease {Equine infectious anemia virus [Tax 83.39
>d3psga_ b.50.1.2 (A:) Pepsin(ogen) {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Pepsin(ogen)
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=100.00  E-value=3.3e-57  Score=441.67  Aligned_cols=299  Identities=24%  Similarity=0.421  Sum_probs=251.4

Q ss_pred             ceeecCCccEEEEEEecCCCceEEEEEEcCCCceeeeCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCccccCCCCCCC
Q 014537           82 ADIIPNNANYLIRISIGTPPTERLAVADTGSDLIWTQCEPCPPSQCYMQDSPLFDPKMSSTYKSLPCSSSQCASLNQKSC  161 (423)
Q Consensus        82 ~~~~~~~~~Y~~~i~vGtP~q~~~~~~DTGSs~~WV~~~~c~~~~C~~~~~~~y~p~~Sst~~~~~c~~~~C~~~~~~~c  161 (423)
                      +..+..+.+|+++|.||||||+|+|+|||||+++||+|..|.  .|..+.++.|||++|+||+...              
T Consensus        49 ~l~n~~d~~Y~~~i~iGtP~Q~~~vi~DTGSs~~Wv~~~~C~--~~~~~~~~~yd~~~Sst~~~~~--------------  112 (370)
T d3psga_          49 PLENYLDTEYFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYCS--SLACSDHNQFNPDDSSTFEATS--------------  112 (370)
T ss_dssp             TTGGGTTCCEEEEEEETTTTEEEEEEEETTCCCEEEEBTTCC--SGGGTTSCCBCGGGCTTCEEEE--------------
T ss_pred             ccccccCCEEEEEEEEcCCCeEEEEEEeCCCCCeEEECccCC--CcccccccccCCCcccccccCC--------------
Confidence            344567889999999999999999999999999999999999  7877889999999999999987              


Q ss_pred             CCCCceeeEEcCCCCeeeEEEEEEEEEecCCCCCceecCceEEEeEEecCCCC--CCCcceeeecCCCCCc---------
Q 014537          162 SGVNCQYSVSYGDGSFSNGNLATETVTLGSTTGQAVALPGITFGCGTNNGGLF--NSKTTGIVGLGGGDIS---------  230 (423)
Q Consensus       162 ~~~~~~~~~~Yg~g~~~~G~~~~D~v~ig~~~~~~~~~~~~~fg~~~~~~~~~--~~~~~GilGLg~~~~s---------  230 (423)
                          |.|.+.|++|+.. |.++.|++.+++.     .++++.||++......+  ....+||+|||++..+         
T Consensus       113 ----~~~~~~Yg~Gs~~-G~~~~d~~~~~~~-----~~~~~~f~~~~~~~~~~~~~~~~~Gi~gl~~~~~~~~~~~~~~~  182 (370)
T d3psga_         113 ----QELSITYGTGSMT-GILGYDTVQVGGI-----SDTNQIFGLSETEPGSFLYYAPFDGILGLAYPSISASGATPVFD  182 (370)
T ss_dssp             ----EEEEEESSSCEEE-EEEEEEEEEETTE-----EEEEEEEEEECSCCCGGGGGCSCSEEEECSCGGGCGGGCCCHHH
T ss_pred             ----CcEEEEeCCceEE-EEEEEEEEeeece-----eeeeeEEEEEeeccCceecccccccccccccCcccccCCCchhh
Confidence                9999999999765 9999999999997     89999999999887754  4678999999987553         


Q ss_pred             -hhhhhhhcccCceEEEeccCCC--ceeeeCC--CCccCCCCeEEeeccCCCCceEEEeEEEEeccEEe-ccCCCcEEEe
Q 014537          231 -LISQMRTTIAGKFSYCLVPVSS--TKINFGT--NGIVSGPGVVSTPLTKAKTFYVLTIDAISVGNQRL-GVSTPDIVID  304 (423)
Q Consensus       231 -l~~ql~~i~~~~Fs~~l~~~~~--g~l~fGg--~~~~~g~~~~~~p~~~~~~~w~v~l~~i~v~~~~~-~~~~~~~iiD  304 (423)
                       +.+| +.+..+.|++|+.+...  |.|+|||  ..++.+ .++|+|+. ...+|.|.++++.++++.+ ......+|||
T Consensus       183 ~l~~~-~~i~~~~fs~~l~~~~~~~g~l~~Gg~d~~~~~~-~l~~~p~~-~~~~w~v~~~~i~v~g~~~~~~~~~~aiiD  259 (370)
T d3psga_         183 NLWDQ-GLVSQDLFSVYLSSNDDSGSVVLLGGIDSSYYTG-SLNWVPVS-VEGYWQITLDSITMDGETIACSGGCQAIVD  259 (370)
T ss_dssp             HHHHT-TCSSSSEEEEEEC-----CEEEEETCCCGGGBSS-CCEEEECS-EETTEEEEECEEESSSSEEECTTCEEEEEC
T ss_pred             hhhhh-cccccceeEEEeecCCCCCceEecCCcCchhccc-ceeEEeec-ccceEEEEEeeEEeCCeEEecCCCccEEEe
Confidence             3344 66788999999988744  9999999  344555 49999998 7889999999999999876 3456799999


Q ss_pred             cCCcceecChhHHHHHHHHHHhhhccCcCCCCCCCcccccccCCCCCCCeEEEEEeCcEEEeCCCceEEEeCCCeEEEE-
Q 014537          305 SGTTLTFLPQGYNSNLLSVMSSMIEAQPVADPTGSLELCYSFNSLSQVPEVTIHFRGADVKLSRSNFFVKVSEDIVCSV-  383 (423)
Q Consensus       305 sGt~~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~P~i~~~f~g~~~~l~~~~~~~~~~~~~~C~~-  383 (423)
                      |||+++++|++++++|.+++.+...    ..+.+.+ +|+...   .+|+|+|+|+|++|+|++++|+++.+  ..|+. 
T Consensus       260 SGTs~~~lp~~~~~~i~~~l~~~~~----~~~~~~~-~C~~~~---~~P~l~f~f~g~~~~l~~~~yi~~~~--~~c~~~  329 (370)
T d3psga_         260 TGTSLLTGPTSAIANIQSDIGASEN----SDGEMVI-SCSSID---SLPDIVFTIDGVQYPLSPSAYILQDD--DSCTSG  329 (370)
T ss_dssp             TTCCSEEEEHHHHHHHHHHTTCEEC----TTCCEEC-CGGGGG---GCCCEEEEETTEEEEECHHHHEEECS--SCEEES
T ss_pred             cCCceEeCCHHHHHHHHHHhCCeee----cCCcEEE-eccccC---CCceEEEEECCEEEEEChHHeEEEcC--CeEEEE
Confidence            9999999999999999988865432    2333434 488654   68999999999999999999998754  34765 


Q ss_pred             EEecC-----CCcceechhhhcceEEEEECCCCEEEEeeCC
Q 014537          384 FKGIT-----NSVPIYGNIMQTNFLVGYDIEQQTVSFKPTD  419 (423)
Q Consensus       384 i~~~~-----~~~~ilG~~fl~~~y~vfD~~~~~igfa~~~  419 (423)
                      |...+     .+.||||++|||++|+|||++++||||||+.
T Consensus       330 ~~~~~~~~~~~~~~ILG~~flr~~y~vfD~~~~~IGfAp~a  370 (370)
T d3psga_         330 FEGMDVPTSSGELWILGDVFIRQYYTVFDRANNKVGLAPVA  370 (370)
T ss_dssp             EEEECCCTTSCCEEEECHHHHTTEEEEEETTTTEEEEEEBC
T ss_pred             EEEcccCCCCCCcEEECHHhhcCEEEEEECCCCEEEEEecC
Confidence            65322     4679999999999999999999999999974
>d2apra_ b.50.1.2 (A:) Acid protease {Bread mold (Rhizopus chinensis) [TaxId: 4843]} Back     information, alignment and structure
>d1j71a_ b.50.1.2 (A:) Acid protease {Yeast (Candida tropicalis) [TaxId: 5482]} Back     information, alignment and structure
>d1dpja_ b.50.1.2 (A:) Acid protease {Baker's yeast (Saccharomyces cerevisiae), proteinase A [TaxId: 4932]} Back     information, alignment and structure
>d1miqa_ b.50.1.2 (A:) Plasmepsin (a hemoglobin-degrading enzyme) {Plasmodium vivax [TaxId: 5855]} Back     information, alignment and structure
>d1smra_ b.50.1.2 (A:) Chymosin (synonym: renin) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1am5a_ b.50.1.2 (A:) Pepsin(ogen) {Atlantic cod (Gadus morhua) [TaxId: 8049]} Back     information, alignment and structure
>d1eaga_ b.50.1.2 (A:) Acid protease {Yeast (Candida albicans) [TaxId: 5476]} Back     information, alignment and structure
>d1hrna_ b.50.1.2 (A:) Chymosin (synonym: renin) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1mppa_ b.50.1.2 (A:) Pepsin {Mucor pusillus [TaxId: 4840]} Back     information, alignment and structure
>d1izea_ b.50.1.2 (A:) Acid protease {Fungus (Aspergillus oryzae) [TaxId: 5062]} Back     information, alignment and structure
>d1bxoa_ b.50.1.2 (A:) Acid protease {Fungus (Penicillium janthinellum), penicillopepsin [TaxId: 5079]} Back     information, alignment and structure
>d2bjua1 b.50.1.2 (A:1-329) Plasmepsin (a hemoglobin-degrading enzyme) {Plasmodium falciparum, plasmepsin II [TaxId: 5833]} Back     information, alignment and structure
>d2qp8a1 b.50.1.2 (A:60-446) beta-secretase (memapsin) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wkra_ b.50.1.2 (A:) Acid protease {Irpex lacteus (Polyporus tulipiferae), Polyporopepsin [TaxId: 5319]} Back     information, alignment and structure
>d1qdma2 b.50.1.2 (A:2-247,A:248-338) Plant acid proteinase, phytepsin {Barley (Hordeum vulgare) [TaxId: 4513]} Back     information, alignment and structure
>d3cmsa_ b.50.1.2 (A:) Chymosin (synonym: renin) {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1t6ex_ b.50.1.2 (X:) Xylanase inhibitor TAXI-I {Wheat (Triticum aestivum) [TaxId: 4565]} Back     information, alignment and structure
>d2nmza1 b.50.1.1 (A:1-99) Human immunodeficiency virus type 1 protease {Human immunodeficiency virus type 1 [TaxId: 11676]} Back     information, alignment and structure
>d4fiva_ b.50.1.1 (A:) Feline immunodeficiency virus (FIV) protease {Feline immunodeficiency virus [TaxId: 11673]} Back     information, alignment and structure
>d3ecga1 b.50.1.1 (A:1-99) Human immunodeficiency virus type 2 (HIV-2) protease {Human immunodeficiency virus type 2 [TaxId: 11709]} Back     information, alignment and structure
>d2fmba_ b.50.1.1 (A:) EIAV protease {Equine infectious anemia virus [TaxId: 11665]} Back     information, alignment and structure