Citrus Sinensis ID: 014600

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420--
Protein Sequence
MTSSTVMNYDIENDDSFTQPVGRWSVLYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISWAYWFKKILYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQSMSPTVLDNNSSITSLTVLDNNSLISTSYISVTRFGLGLIPAICSLVSVAVTFTMKLHTPYSKPLVEPLLQ
Secondary Structure (PSIPRED)
cccccccccccccccccccccccHHHHHccccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHcccEEEEEEcccccccccHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHccEEEEcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccEEEEEEcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccEEEcccccccccccccccccEEEEEccccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHcccEEEEEcccccccccEEEEEHEEHEEEHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccEEEEEHHHHHHHHHHHHHHHHHHHcccccccccccccccEEEEcccccccccEEEEEHHHHHHcHHHHHHHHHHHHHHHHHcccccccccccccccc
Coil and Loop (DISEMBL)
mtsstvmnydienddsftqpvgRWSVLYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFghfkiwhgAGSVLVAVSFSSvfggcmpcrilststlkvETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVStakthadleNQYRWIAYSSIFIGCCFVgiflsrteeprlkmglrgnshARISWAYWFKKILYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQVTGISMQNVLvgedlsgcafvcgtlsfldkmSCGIAVYVLQSyqsmsptvldnnssitsltvldnnslistSYISVTRFGLGLIPAICSLVSVAVTFTmklhtpyskplvepllq
Flexible Loop (DISEMBL)
mtsstvmnydienddsftqpvGRWSVLYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISWAYWFKKILYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQSMSPTVLDNNSSITSLTVLDNNSLISTSYISVTRFGLGLIPAICSLVSVAVTFTMKlhtpyskplvepllq
Low Complexity Region (SEG)
MTSSTVMNYDIENDDSFTQPVGRWSVLYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHgagsvlvavsfssvfggCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISWAYWFKKILYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQSMSPTVLDNNSSITSLTVLDNNSLISTSYISVTRFGLGLIPAICSLVSVAVTFTMKLHTPYSKPLVEPLLQ
Disordered region (IsUnstruct)
**************DSFTQPVGRWSVLYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISWAYWFKKILYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQSMSPTVLDNNSSITSLTVLDNNSLISTSYISVTRFGLGLIPAICSLVSVAVTFTMKLHTPY**********
Disordered Region (DISOPRED)
************************SVLYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTE*****************WAYWFKKILYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQSMSPTVLDNNSSITSLTVLDNNSLISTSYISVTRFGLGLIPAICSLVSVAVTFTMKLHTPYSKP*VEPLL*
Disordered Region (DISEMBL)
MTSSTVMNYDIENDDSFTQPVGRWSVLYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISWAYWFKKILYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQSMSPTVLDNNSSITSLTVLDNNSLISTSYISVTRFGLGLIPAICSLVSVAVTFTMKLHTPYSKPLVEPLLQ
Disordered Region (DISPRO)
***********ENDDSFTQPVGRWSVLYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEE**********SHARISWAYWFKKILYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQSMSPTVLDNNSSITSLTVLDNNSLISTSYISVTRFGLGLIPAICSLVSVAVTFTMKLHTPYSKPLV*****
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MTSSTVMNYDIENDDSFTQPVGRWSVLYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISWAYWFKKILYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQSMSPTVLDNNSSITSLTVLDNNSLISTSYISVTRFGLGLIPAICSLVSVAVTFTMKLHTPYSKPLVEPLLQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	422	2.2.26 [Sep-21-2011]
Q6NUT3	480	Major facilitator superfa	yes	no	0.779	0.685	0.292	5e-42
Q3U481	476	Major facilitator superfa	yes	no	0.796	0.705	0.302	1e-41
P94488	463	Uncharacterized symporter	yes	no	0.473	0.431	0.263	2e-05
P74168	544	Uncharacterized symporter	N/A	no	0.338	0.262	0.290	0.0009

>sp|Q6NUT3|MFS12_HUMAN Major facilitator superfamily domain-containing protein 12 OS=Homo sapiens GN=MFSD12 PE=2 SV=2

 Score =  172 bits (436), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 121/413 (29%), Positives = 196/413 (47%), Gaps = 84/413 (20%)

Query: 19  QPVGRWSVLYYGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATI 77
           +P+   + L Y  GH LND+ A+ WFTYLLL+L  +   S RGA  ++L GQ+ADG  T 
Sbjct: 15  RPLSLVARLSYAVGHFLNDLCASMWFTYLLLYLHSVRAYSSRGAGLLLLLGQVADGLCTP 74

Query: 78  FIGELIDR-------FGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVETISYC 130
            +G   DR       +G  K WH  G+V V +SF  +F  C+ C   + +      + Y 
Sbjct: 75  LVGYEADRAASCCARYGPRKAWHLVGTVCVLLSFPFIFSPCLGCG--AATPEWAALLYYG 132

Query: 131 VFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSV- 189
            F  IF  GWA+TQ++H+S++  +  N   +V LT+ R AFT+VAN+++Y  A+++  + 
Sbjct: 133 PFIVIFQFGWASTQISHLSLIPELVTNDHEKVELTALRYAFTVVANITVYGAAWLLLHLQ 192

Query: 190 --STAKTHADLE--NQ--------YRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNS 237
             S  +   D+   +Q        +R ++   + +G  F  +F   T E R         
Sbjct: 193 GSSRVEPTQDISISDQLGGQDVPVFRNLSLLVVGVGAVFSLLFHLGTRERRRPHAEEPGE 252

Query: 238 HARIS----------WAYWFKKILYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSA 287
           H  +           W +W ++  +YQV ++YM TRL+VN+SQ Y+A Y+   L + +  
Sbjct: 253 HTPLLAPATAQPLLLWKHWLREPAFYQVGILYMTTRLIVNLSQTYMAMYLTYSLHLPKKF 312

Query: 288 KALVPAIIYICSFIVSILLQ---------------------------------------- 307
            A +P ++Y+  F+ S L++                                        
Sbjct: 313 IATIPLVMYLSGFLSSFLMKPINKCIGRNMTYFSGLLVILAFAAWVALAEGLGVAVYAAA 372

Query: 308 -----------VTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQS 349
                      VT ++M   L+G   +  AFV G++SFLDK++ G+AV  +QS
Sbjct: 373 VLLGAGCATILVTSLAMTADLIGPHTNSGAFVYGSMSFLDKVANGLAVMAIQS 425

Homo sapiens (taxid: 9606)

>sp|Q3U481|MFS12_MOUSE Major facilitator superfamily domain-containing protein 12 OS=Mus musculus GN=Mfsd12 PE=2 SV=1

 Score =  171 bits (432), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 127/420 (30%), Positives = 196/420 (46%), Gaps = 84/420 (20%)

Query: 12  ENDDSFTQPVGRWSV---LYYGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLS 67
            +DD+   P    S+   L +  GH LND+ A  WFTYLLLFL  + G S RGA  ++L 
Sbjct: 4   PSDDAGPGPPRTLSLAARLSFAVGHFLNDLCAGMWFTYLLLFLHSVRGYSSRGAGLLLLL 63

Query: 68  GQIADGFATIFIGELIDRF-----GHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTL 122
           GQ+ADG  T  +G   DR      G  K WH AG+V V +SF  +F  C+ C     +  
Sbjct: 64  GQVADGLCTPLVGYEADRASCVRCGPRKAWHLAGTVCVLLSFPFIFSPCLGCG--EATPE 121

Query: 123 KVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAI 182
               + Y  F  +F  GWAATQ+AH+S++  +  +   +V LT+ R AFT+VAN+++Y  
Sbjct: 122 WAALLYYGPFIVVFQFGWAATQIAHLSLIPELVTSDHEKVELTALRYAFTVVANITVYGA 181

Query: 183 AFIVFSVS-TAKTHADLE--NQ--------YRWIAYSSIFIGCCFVGIFLSRTEEPRLKM 231
           A+++  +  +A    D+   +Q        +R +A   + +G  F  +F   T+E     
Sbjct: 182 AWLLLHLQGSAHGEQDISVGDQLGVQDVPVFRNLALLVVGVGAIFSLLFHLGTKEGHRSQ 241

Query: 232 --GLRGNSHARIS---------WAYWFKKILYYQVALVYMLTRLVVNVSQAYLAFYVIND 280
             G   N H  +          W +W ++  +YQV ++YM TRL+VN+SQ Y+A Y+   
Sbjct: 242 HWGNEPNEHTPLVAPAAQPLLLWKHWLREPAFYQVGMLYMTTRLIVNLSQTYIAMYLTYS 301

Query: 281 LRMGQSAKALVPAIIYICSFIVSILLQ--------------------------------- 307
           L + +   A +P ++Y+  F  S L++                                 
Sbjct: 302 LSLPKKFIATIPLVMYLSGFFSSFLMKPVNRRIGRNMTYFTGLLVILAFAAWVALADNLG 361

Query: 308 ------------------VTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQS 349
                             VT ++M   L+G      AFV G +SF DK++ G+AV  +QS
Sbjct: 362 VAVYGAAVLLGAGCATILVTSLAMTADLIGPHTHSGAFVYGAMSFSDKVANGLAVMAVQS 421

Mus musculus (taxid: 10090)

>sp|P94488|YNAJ_BACSU Uncharacterized symporter YnaJ OS=Bacillus subtilis (strain 168) GN=ynaJ PE=3 SV=2

 Score = 51.2 bits (121), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 62/235 (26%), Positives = 99/235 (42%), Gaps = 35/235 (14%)

Query: 29  YGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELID--- 84
           Y SG    ++  A   TYLL F TD+ GLS   A  + L  +I D  A  FIG ++D   
Sbjct: 17  YASGDFACNLIYATVSTYLLFFYTDVFGLSAAAAGTMFLVVRIIDALADPFIGTIVDRTN 76

Query: 85  -RFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILST---STLKVETISYCVFAAIFNVGW 140
            RFG F+ +              +  G  P  IL+    +T     +   ++A I  VG 
Sbjct: 77  SRFGRFRPY--------------LLFGAFPFVILAILCFTTPDFSDMGKLIYAYITYVGL 122

Query: 141 AAT----QVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHA 196
           + T     V + ++ + +T N+   V +TS R  F   ANL    +AF V  ++   +  
Sbjct: 123 SLTYTTINVPYGALTSAMTRNNQEVVSITSVRMLF---ANLGGLVVAFFVPLLAAYLSDT 179

Query: 197 DLENQYRWIAYSSIF--IGCCFVGIFLSRTEEPRLKMGLRGNSHARISWAYWFKK 249
                  W     I   IG C + IF  ++ + R+ +     S  +I +   F++
Sbjct: 180 SGNESLGWQLTMGILGMIGGCLL-IFCFKSTKERVTL---QKSEEKIKFTDIFEQ 230

Bacillus subtilis (strain 168) (taxid: 224308)

>sp|P74168|Y1374_SYNY3 Uncharacterized symporter sll1374 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=sll1374 PE=3 SV=1

 Score = 45.4 bits (106), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 45/155 (29%), Positives = 70/155 (45%), Gaps = 12/155 (7%)

Query: 27  LYYGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELID- 84
           L YG+G     ITA     YLL FLTD+ G+    A +V++ G+I D      IG L D 
Sbjct: 16  LAYGAGDFGPAITANILVFYLLFFLTDVAGIPAALAGSVLMIGKIFDAINDPIIGLLSDR 75

Query: 85  ---RFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVE---TISYCVFAAIFNV 138
              R+G    W   G +  A+ +++ +   +P    S   L  +    I Y   A  FN+
Sbjct: 76  TRSRWGRRLPWMLGGMIPFALFYTAQW--LIPH--FSDDRLTNQWGLFIYYVAIAMAFNL 131

Query: 139 GWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTM 173
            +    + + ++   +T N   R  L S R AF++
Sbjct: 132 CYTTVNLPYTALTPELTQNYNERTRLNSFRFAFSI 166

Synechocystis sp. (strain PCC 6803 / Kazusa) (taxid: 1111708)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	422
255542273	454	conserved hypothetical protein [Ricinus	0.950	0.883	0.658	1e-176
224106589	442	predicted protein [Populus trichocarpa]	0.914	0.873	0.639	1e-168
356557090	452	PREDICTED: uncharacterized MFS-type tran	0.943	0.880	0.636	1e-166
224120942	457	predicted protein [Populus trichocarpa]	0.950	0.877	0.629	1e-165
356525698	452	PREDICTED: uncharacterized MFS-type tran	0.943	0.880	0.632	1e-165
357451101	453	MFS-type transporter, putative [Medicago	0.945	0.880	0.626	1e-164
359487445	453	PREDICTED: uncharacterized MFS-type tran	0.936	0.871	0.627	1e-163
255646539	452	unknown [Glycine max]	0.943	0.880	0.626	1e-163
297828147	461	hypothetical protein ARALYDRAFT_903845 [	0.962	0.880	0.622	1e-162
145331127	462	major facilitator protein [Arabidopsis t	0.964	0.880	0.613	1e-162

>gi|255542273|ref|XP_002512200.1| conserved hypothetical protein [Ricinus communis] gi|223548744|gb|EEF50234.1| conserved hypothetical protein [Ricinus communis]

 Score =  624 bits (1610), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 309/469 (65%), Positives = 355/469 (75%), Gaps = 68/469 (14%)

Query: 7   MNYDIENDDSFTQPVGRWSVLYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVML 66
           M  DIE+D+S+ +PVGRW V YYG GHMLNDITAACWFTYLLLFLTDIGLSPR AA VML
Sbjct: 1   MGDDIEDDNSYPKPVGRWPVFYYGVGHMLNDITAACWFTYLLLFLTDIGLSPRDAATVML 60

Query: 67  SGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVET 126
           SGQIADGFATIF GELIDRFGHFK+WHGAGSVLVA+SFSSVFGGC PC+IL T++  +ET
Sbjct: 61  SGQIADGFATIFAGELIDRFGHFKVWHGAGSVLVAISFSSVFGGCFPCKILGTNSSTIET 120

Query: 127 ISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIV 186
           +SY +FAAIFNVGWAATQV+HMSMVNCI+LNSTSRVV+ SCRNAFTMVANLSLYAIA  +
Sbjct: 121 VSYSIFAAIFNVGWAATQVSHMSMVNCISLNSTSRVVMASCRNAFTMVANLSLYAIALTI 180

Query: 187 FSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISWAYW 246
           F+VS A+THAD++NQYRWIAY SI  GCCFVGIF   T+EPRLK+ L   S ARISW YW
Sbjct: 181 FNVSKAETHADIQNQYRWIAYLSICFGCCFVGIFHLGTKEPRLKISLHEISCARISWTYW 240

Query: 247 FKKILYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILL 306
           FKKILYYQV LVY+LTRLV NVSQAYLAFYVINDLRM QSAKALVPAIIYI SF++S+++
Sbjct: 241 FKKILYYQVGLVYVLTRLVQNVSQAYLAFYVINDLRMAQSAKALVPAIIYISSFVISVIM 300

Query: 307 Q-----------------------------------------------------VTGISM 313
           Q                                                     VTG+SM
Sbjct: 301 QEISWTGQRLKAYYSAGGILWMFCGASILLLPRSMSAFMYIISIFIGIGNALMTVTGVSM 360

Query: 314 QNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQSMSPTVLDNNSSITSLTVLDNN 373
           ++VLVG DL+GCAFVCG+L FLDK+SCG+A+Y LQS+Q++SP V DN             
Sbjct: 361 ESVLVGSDLNGCAFVCGSLGFLDKISCGLALYALQSFQTISPKVQDN------------- 407

Query: 374 SLISTSYISVTRFGLGLIPAICSLVSVAVTFTMKLHTPYSKPLVEPLLQ 422
             +S  +ISVTRFGLGL+PA CSLV V VT++MKLHT Y KPL+EPLL+
Sbjct: 408 --LSIEHISVTRFGLGLVPAFCSLVGVGVTYSMKLHTAYPKPLIEPLLE 454

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224106589|ref|XP_002314218.1| predicted protein [Populus trichocarpa] gi|222850626|gb|EEE88173.1| predicted protein [Populus trichocarpa]

 Score =  599 bits (1544), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 298/466 (63%), Positives = 347/466 (74%), Gaps = 80/466 (17%)

Query: 10  DIENDDSFTQPVGRWSVLYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQ 69
           D+E+DDS  +PVGR SV YYG GHMLNDITAACWFTYLLLFLT+IGLSPR AA VML+GQ
Sbjct: 4   DVEDDDSCPKPVGRSSVFYYGVGHMLNDITAACWFTYLLLFLTEIGLSPRDAAIVMLAGQ 63

Query: 70  IADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVETISY 129
           IADGFAT+F GELIDRFGHFKIWHGAGS+L A+SFSSVFGGC+PC+IL++S+  +ETISY
Sbjct: 64  IADGFATVFAGELIDRFGHFKIWHGAGSILAAISFSSVFGGCLPCKILASSSPIIETISY 123

Query: 130 CVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSV 189
              AAIFNVGWAATQV+HMSMVNCI+LNSTSRVV+TSCRNAFTMVANLSLYA+A +VFS 
Sbjct: 124 STSAAIFNVGWAATQVSHMSMVNCISLNSTSRVVMTSCRNAFTMVANLSLYAVALVVFST 183

Query: 190 STAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISWAYWFKK 249
           + A TH+D+ENQY WIAY+SIFIGCCFVGIF   T+EPRLK+ + G S+ARISWAYWFKK
Sbjct: 184 TKATTHSDIENQYHWIAYTSIFIGCCFVGIFHLGTKEPRLKIRVHGTSYARISWAYWFKK 243

Query: 250 ILYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQ-- 307
           +LYYQV LVYMLTRL  NVSQAYLAFYVI D+RM +SAKALVPAIIYI SFIVSI++Q  
Sbjct: 244 VLYYQVGLVYMLTRLAQNVSQAYLAFYVIEDMRMAKSAKALVPAIIYISSFIVSIIMQEM 303

Query: 308 ---------------------------------------------------VTGISMQNV 316
                                                              +TG+SMQ+V
Sbjct: 304 YWTGQRLKAYYCAGGVLWVFCGASILFLPRSLSAFMYVISVFIGVANTLMTITGVSMQSV 363

Query: 317 LVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQSMSPTVLDNNSSITSLTVLDNNSLI 376
           LVG DL GCAFV G+LSFLDK+SCG+AV+VLQS+Q                         
Sbjct: 364 LVGSDLDGCAFVYGSLSFLDKVSCGLAVFVLQSFQ------------------------- 398

Query: 377 STSYISVTRFGLGLIPAICSLVSVAVTFTMKLHTPYSKPLVEPLLQ 422
              YISVTR+GLGL+PA+CSL  +A+T+TMKL TP+SK L+EPLL+
Sbjct: 399 --KYISVTRYGLGLLPAVCSLTGMAITYTMKLQTPHSKSLMEPLLE 442

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356557090|ref|XP_003546851.1| PREDICTED: uncharacterized MFS-type transporter C19orf28-like [Glycine max]

 Score =  590 bits (1522), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 298/468 (63%), Positives = 345/468 (73%), Gaps = 70/468 (14%)

Query: 7   MNYDIENDDSFTQPVGRWSVLYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVML 66
           M   +E DD++T+ +GRW V YYG GHMLNDITAACWFTYLLLFLTDIGLSPR AAAVML
Sbjct: 1   MGTIVEADDTYTKILGRWPVFYYGMGHMLNDITAACWFTYLLLFLTDIGLSPRNAAAVML 60

Query: 67  SGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVET 126
           SGQ+ADGFATI +GELIDRFGHFKIWHGAGS+LVA+SFSSVFGGC+PC++ S+++   ET
Sbjct: 61  SGQVADGFATILVGELIDRFGHFKIWHGAGSLLVAISFSSVFGGCLPCKLFSSNSCTFET 120

Query: 127 ISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIV 186
           +SY VFAAIFN+GWAATQV+HMSMV+CITLNSTSRV L SCRNAFTMVANLSLYA+A IV
Sbjct: 121 VSYSVFAAIFNLGWAATQVSHMSMVSCITLNSTSRVALASCRNAFTMVANLSLYAVALIV 180

Query: 187 FSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISWAYW 246
           FSV   KTH D+ENQYRWIAY SIFIGCCFVG+FL  T+EPRLK+G+ G  HARISW YW
Sbjct: 181 FSVINGKTHDDVENQYRWIAYFSIFIGCCFVGVFLLATKEPRLKLGVHGMVHARISWDYW 240

Query: 247 FKKILYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILL 306
           FK+ILYYQVALVY+LTRLV+N+SQAYLAF+VINDL+M QSAKALVPA+IYICSF+VSI L
Sbjct: 241 FKRILYYQVALVYVLTRLVLNISQAYLAFFVINDLQMAQSAKALVPALIYICSFVVSIAL 300

Query: 307 Q-----------------------------------------------------VTGISM 313
           Q                                                     VTG+SM
Sbjct: 301 QEIAWTGRMLKAYYSAGCILWIFCGAVILLLTTNMSYVMYIVSVFIGIANALMMVTGVSM 360

Query: 314 QNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQSMSPTVLDNNSSITSLTVLDNN 373
           QN L+G +L+GCAFV G+LSFLDK+SCGIA+YVLQS Q++SP +     + T        
Sbjct: 361 QNFLIGGNLNGCAFVVGSLSFLDKISCGIALYVLQSNQNLSPQL----QATTQFP----- 411

Query: 374 SLISTSYISVTRFGLGLIPAICSLVSVAVTFTMKLHTPYSKPLVEPLL 421
                   SVTR GLGL+PA C+LV V VT TM  H P SK +  PLL
Sbjct: 412 -------FSVTRVGLGLVPAFCALVGVVVTCTMDFHNP-SKSMTAPLL 451

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224120942|ref|XP_002330864.1| predicted protein [Populus trichocarpa] gi|222872686|gb|EEF09817.1| predicted protein [Populus trichocarpa]

 Score =  589 bits (1518), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 297/472 (62%), Positives = 350/472 (74%), Gaps = 71/472 (15%)

Query: 7   MNYDIENDD---SFTQPVGRWSVLYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAA 63
           M  D+ENDD   S+ +PVGR  V YYG GHMLNDITAACWFTYLLLFLT+IGLSPR AA 
Sbjct: 1   MRNDVENDDDDDSYPKPVGRRCVFYYGVGHMLNDITAACWFTYLLLFLTEIGLSPRDAAI 60

Query: 64  VMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLK 123
            ML+GQIADGFAT+F GELIDRFGHFK+WHGAGS+LVA+SFSSVFGGC+PC+IL++ +  
Sbjct: 61  AMLAGQIADGFATVFAGELIDRFGHFKVWHGAGSILVAISFSSVFGGCLPCKILASCSSV 120

Query: 124 VETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIA 183
           VET+SY   AAIFNVGWAATQV+HMSMVNCI+LNS+SRVV+TSCRNAFTMVANLSLYA+A
Sbjct: 121 VETVSYSTSAAIFNVGWAATQVSHMSMVNCISLNSSSRVVMTSCRNAFTMVANLSLYAVA 180

Query: 184 FIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISW 243
            +VFS   A THAD+ENQYRWIAY+SIFIGCCFVGIF   T+EPRLK+ + G S+ARISW
Sbjct: 181 LVVFSSIKATTHADIENQYRWIAYTSIFIGCCFVGIFHLGTKEPRLKICVHGTSNARISW 240

Query: 244 AYWFKKILYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVS 303
           AYWFKK+LYYQV LVYMLTRLV NVSQ YLAFYV++DL+M +SAKALVPAIIY+ SF VS
Sbjct: 241 AYWFKKVLYYQVGLVYMLTRLVQNVSQVYLAFYVMDDLQMAKSAKALVPAIIYMSSFFVS 300

Query: 304 ILLQ-----------------------------------------------------VTG 310
           +++Q                                                     VTG
Sbjct: 301 VIMQEMSWTGQRLKAYYSAGGILWVFCGAGILFLPRNMSAFMYVISVLIGIANALMTVTG 360

Query: 311 ISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQSMSPTVLDNNSSITSLTVL 370
           +SMQ++LVG DL+GCAFV G+LSFLDK+SCG+AV+ LQS+QS SP               
Sbjct: 361 VSMQSILVGSDLNGCAFVYGSLSFLDKISCGLAVFALQSFQSSSP--------------- 405

Query: 371 DNNSLISTSYISVTRFGLGLIPAICSLVSVAVTFTMKLHTPYSKPLVEPLLQ 422
                +ST Y SVTR+GLGL+PA+CSL  VA+T+TMKL T  SK L+EPLL+
Sbjct: 406 KTEEALSTDYFSVTRYGLGLLPAVCSLAGVAITYTMKLQTQDSKSLMEPLLE 457

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356525698|ref|XP_003531460.1| PREDICTED: uncharacterized MFS-type transporter C19orf28-like [Glycine max]

 Score =  586 bits (1510), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 296/468 (63%), Positives = 344/468 (73%), Gaps = 70/468 (14%)

Query: 7   MNYDIENDDSFTQPVGRWSVLYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVML 66
           M   +E D+++T+ +GRW V YYG GHMLNDITAACWFTYLLLFLTDIGLSPR AA VML
Sbjct: 1   MGTIVEADNTYTKILGRWPVFYYGMGHMLNDITAACWFTYLLLFLTDIGLSPRNAAVVML 60

Query: 67  SGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVET 126
           SGQ+ADGF TIF+GELIDRFGHFKIWHGAGS+LVA+SFSSVFGGC+PC++ S+++   ET
Sbjct: 61  SGQVADGFVTIFVGELIDRFGHFKIWHGAGSLLVAISFSSVFGGCLPCKLFSSNSGTFET 120

Query: 127 ISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIV 186
           +SY ++AAIFNVGWAATQV+HMSMV+CITLNSTSRV L SCRNAFTMVANLSLYA+A IV
Sbjct: 121 LSYSMYAAIFNVGWAATQVSHMSMVSCITLNSTSRVALASCRNAFTMVANLSLYAVALIV 180

Query: 187 FSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISWAYW 246
           FSV   KTH D+ENQYRWIAY SIFIGCCFVG+F   T+EPRLK+G+ G  HARISW YW
Sbjct: 181 FSVINGKTHDDVENQYRWIAYLSIFIGCCFVGVFHLATKEPRLKVGVHGMVHARISWDYW 240

Query: 247 FKKILYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILL 306
           FK+ILYYQVALVY+LTRLV+NVSQAYLAF+VINDL+M QSAKALVPA+IYICSF+VSI L
Sbjct: 241 FKRILYYQVALVYVLTRLVLNVSQAYLAFFVINDLQMAQSAKALVPALIYICSFVVSIAL 300

Query: 307 Q-----------------------------------------------------VTGISM 313
           Q                                                     VTG+SM
Sbjct: 301 QEIAWTGRMLKAYYSAGCILWIFCGAVILLLTTNMSYVMYIVSVFIGIANALMMVTGVSM 360

Query: 314 QNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQSMSPTVLDNNSSITSLTVLDNN 373
           QN L+GE+L+GCAFV G+LSFLDK+SCG+A+YVLQS Q++SP +     + T        
Sbjct: 361 QNFLIGENLNGCAFVVGSLSFLDKISCGLALYVLQSNQNLSPQL----QATTQFP----- 411

Query: 374 SLISTSYISVTRFGLGLIPAICSLVSVAVTFTMKLHTPYSKPLVEPLL 421
                   SVTR GLGL+PA C+LV V VT TM  H P SK L  PLL
Sbjct: 412 -------FSVTRIGLGLVPAFCALVGVVVTCTMDFHNP-SKSLTAPLL 451

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357451101|ref|XP_003595827.1| MFS-type transporter, putative [Medicago truncatula] gi|124360106|gb|ABN08122.1| C19orf28 protein, related [Medicago truncatula] gi|355484875|gb|AES66078.1| MFS-type transporter, putative [Medicago truncatula]

 Score =  585 bits (1508), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 294/469 (62%), Positives = 342/469 (72%), Gaps = 70/469 (14%)

Query: 6   VMNYDIENDDSFTQPVGRWSVLYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVM 65
           +M   IE DD+FT+ +GR  + YYG GHMLNDIT+ACWFTYLLLFLTDIG SPR AA VM
Sbjct: 1   MMGTVIEEDDTFTKALGRGPIFYYGMGHMLNDITSACWFTYLLLFLTDIGFSPRNAAIVM 60

Query: 66  LSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVE 125
           LSGQ+AD FAT+F+GELIDRFGHFKIWHGAGS+LVA+SFSSVFGGC+PC I ++ ++  E
Sbjct: 61  LSGQVADAFATVFVGELIDRFGHFKIWHGAGSLLVAISFSSVFGGCLPCTIFTSDSITFE 120

Query: 126 TISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFI 185
           T+SY VFAAIFNVGWAATQV+HMSMV+CITLNSTSRV L SCRNAFTMVANLSLYAIA I
Sbjct: 121 TVSYSVFAAIFNVGWAATQVSHMSMVSCITLNSTSRVALASCRNAFTMVANLSLYAIALI 180

Query: 186 VFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISWAY 245
           VFSV   KT+A++ENQYRWIAY SIFIGCCFVGIFL  T+EPRL+M + G +  RISWAY
Sbjct: 181 VFSVVNGKTYANVENQYRWIAYVSIFIGCCFVGIFLLATKEPRLQMDVHGKARGRISWAY 240

Query: 246 WFKKILYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSIL 305
           WFK++LYYQVAL+Y+LTRL+VN+SQAYLAFYVINDL+M QSAKALVPAIIYI SFIVSI 
Sbjct: 241 WFKRVLYYQVALIYVLTRLIVNISQAYLAFYVINDLQMAQSAKALVPAIIYISSFIVSIA 300

Query: 306 LQ-----------------------------------------------------VTGIS 312
           LQ                                                     VTGIS
Sbjct: 301 LQEIAWTGKLLKAYFSAGSILWIFCGAVIMLLTDHMSYAMYIVSVFIGIANALMMVTGIS 360

Query: 313 MQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQSMSPTVLDNNSSITSLTVLDN 372
           MQN L+GE+L+GCAFV G+LSFLDKMSCGIA+Y+LQSYQ++SP +               
Sbjct: 361 MQNFLIGENLNGCAFVVGSLSFLDKMSCGIALYILQSYQNISPQL--------------- 405

Query: 373 NSLISTSYISVTRFGLGLIPAICSLVSVAVTFTMKLHTPYSKPLVEPLL 421
              I+    S+TR GLGL+PA+C+L+ V V  TM  H P S  L  PLL
Sbjct: 406 -QAINQFPPSITRLGLGLVPAVCALLGVVVACTMDFHHP-SNSLTAPLL 452

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359487445|ref|XP_002270525.2| PREDICTED: uncharacterized MFS-type transporter C19orf28-like [Vitis vinifera] gi|297741204|emb|CBI32155.3| unnamed protein product [Vitis vinifera]

 Score =  582 bits (1499), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 291/464 (62%), Positives = 345/464 (74%), Gaps = 69/464 (14%)

Query: 11  IENDDSFTQPVGRWSVLYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQI 70
           +E+DD+FT+P+GR +V YYG GHMLNDIT+ACWFTYLL+FLTDIGL  R AA VMLSGQI
Sbjct: 5   MEDDDAFTKPLGRQAVFYYGVGHMLNDITSACWFTYLLVFLTDIGLPSRDAATVMLSGQI 64

Query: 71  ADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVETISYC 130
           ADGF TIF GELIDRFGHFKIWHGAGS+LVAVSFSSVFGGC+PC+I  +++  ++T+ Y 
Sbjct: 65  ADGFTTIFAGELIDRFGHFKIWHGAGSILVAVSFSSVFGGCLPCKIFGSNSSTLQTVGYS 124

Query: 131 VFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVS 190
           +FAAIFNVGWAATQV+HMSMVNCITLNSTSRVVL SCRNAFTMVANLSLYA+AF+VF+ S
Sbjct: 125 MFAAIFNVGWAATQVSHMSMVNCITLNSTSRVVLASCRNAFTMVANLSLYAVAFVVFNSS 184

Query: 191 TAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISWAYWFKKI 250
              T  D+ENQYRWIAY SI IGCCFV IFL  T+EPRLK G  G  +ARI W++WF+K+
Sbjct: 185 KPHTLVDIENQYRWIAYLSIAIGCCFVAIFLLGTKEPRLKKGAHGKGYARILWSHWFRKV 244

Query: 251 LYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQ--- 307
           LYYQVALVY+LTRLV NVSQA+LAFYVINDL+M QS+KALVPAIIYICSFIVSI+LQ   
Sbjct: 245 LYYQVALVYVLTRLVTNVSQAFLAFYVINDLQMSQSSKALVPAIIYICSFIVSIILQEFT 304

Query: 308 --------------------------------------------------VTGISMQNVL 317
                                                             VTG+SMQ+ L
Sbjct: 305 WSGQRLKAFYSAGGILWIICGAGILFLPRNMNAFMYILSIIIGIANALMMVTGVSMQSFL 364

Query: 318 VGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQSMSPTVLDNNSSITSLTVLDNNSLIS 377
           VGEDL GCAFV G+LSFLDK+SCG+A++VL+SY + SP +                S+IS
Sbjct: 365 VGEDLHGCAFVYGSLSFLDKISCGLALFVLESYGNSSPDL--------------QGSVIS 410

Query: 378 TSYISVTRFGLGLIPAICSLVSVAVTFTMKLHTPYSKPLVEPLL 421
               SV+R+GLG++PA+C+LV V VT+TM LHTP  KP++EPLL
Sbjct: 411 R--FSVSRYGLGVVPAVCALVGVVVTYTMNLHTPVPKPIMEPLL 452

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255646539|gb|ACU23744.1| unknown [Glycine max]

 Score =  580 bits (1494), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 293/468 (62%), Positives = 341/468 (72%), Gaps = 70/468 (14%)

Query: 7   MNYDIENDDSFTQPVGRWSVLYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVML 66
           M   +E D+++T+ +GRW V YYG GHMLNDITAACWFTYLLLFLTDIGLSPR AA VML
Sbjct: 1   MGTIVEADNTYTKILGRWPVFYYGMGHMLNDITAACWFTYLLLFLTDIGLSPRNAAVVML 60

Query: 67  SGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVET 126
           SGQ+ADGF TIF+GELI RFGHFKIWHGAGS+LVA+SFSSVFGGC+PC++ S+++   ET
Sbjct: 61  SGQVADGFVTIFVGELIGRFGHFKIWHGAGSLLVAISFSSVFGGCLPCKLFSSNSGTFET 120

Query: 127 ISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIV 186
           +SY ++AAIFNVGWAATQV+HMSMV+CITLNSTSRV L SCRNAFTMVANLSLYA+A IV
Sbjct: 121 LSYSMYAAIFNVGWAATQVSHMSMVSCITLNSTSRVALASCRNAFTMVANLSLYAVALIV 180

Query: 187 FSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISWAYW 246
           FSV   KTH D+ENQYRWIAY SIFIGCCFVG+F   T+EPRLK+G+ G  HARISW YW
Sbjct: 181 FSVIIGKTHDDVENQYRWIAYLSIFIGCCFVGVFRLATKEPRLKVGVHGMVHARISWGYW 240

Query: 247 FKKILYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILL 306
           FK+ILYYQVALVY+LTRLV+NVSQAYLAF+VINDL+M QSAKALVPA+IYICSF+VSI L
Sbjct: 241 FKRILYYQVALVYVLTRLVLNVSQAYLAFFVINDLQMAQSAKALVPALIYICSFVVSIAL 300

Query: 307 Q-----------------------------------------------------VTGISM 313
           Q                                                     VTG+SM
Sbjct: 301 QEIAWTGRMLKAYYSAGCILWIFCGAVILLLTTNMSYVMYIVSVFIGIANALMMVTGVSM 360

Query: 314 QNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQSMSPTVLDNNSSITSLTVLDNN 373
           QN L+GE+L+GCAFV G+LSFLDK+SCG+A+YV QS Q++ P +     + T        
Sbjct: 361 QNFLIGENLNGCAFVVGSLSFLDKISCGLALYVFQSNQNLFPQL----QATTQFP----- 411

Query: 374 SLISTSYISVTRFGLGLIPAICSLVSVAVTFTMKLHTPYSKPLVEPLL 421
                   SVTR GLGL+PA C+LV V VT TM  H P SK L  PLL
Sbjct: 412 -------FSVTRIGLGLVPAFCALVGVVVTCTMDFHNP-SKSLTAPLL 451

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297828147|ref|XP_002881956.1| hypothetical protein ARALYDRAFT_903845 [Arabidopsis lyrata subsp. lyrata] gi|297327795|gb|EFH58215.1| hypothetical protein ARALYDRAFT_903845 [Arabidopsis lyrata subsp. lyrata]

 Score =  578 bits (1491), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 295/474 (62%), Positives = 346/474 (72%), Gaps = 68/474 (14%)

Query: 1   MTSSTVMNYDIENDDSFTQPVGRWSVLYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRG 60
           MTSS  +  + E D S T+P+GR SV YYG GHMLNDITA+CWFTYLLLFLT IGLSPR 
Sbjct: 1   MTSSVTVGMEEEEDPS-TKPLGRLSVFYYGVGHMLNDITASCWFTYLLLFLTQIGLSPRD 59

Query: 61  AAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTS 120
           AA VMLSGQ+ADGFATIFIGELIDRFGHFKIWH AGS+LVA+SFSSVFGGC PC +L ++
Sbjct: 60  AAIVMLSGQVADGFATIFIGELIDRFGHFKIWHAAGSLLVAISFSSVFGGCFPCSLLHSN 119

Query: 121 TLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLY 180
           +  VET+SYC+FAAIFNVGWAATQV+HM+MVNCITLNSTSRV LTS RNAF+MVANL LY
Sbjct: 120 SSTVETLSYCMFAAIFNVGWAATQVSHMAMVNCITLNSTSRVALTSSRNAFSMVANLGLY 179

Query: 181 AIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHAR 240
           AIA +VF VS A T  + E QYRWIAYSSI +GCCFV IFL  T+EPR+K+ LR  S +R
Sbjct: 180 AIALVVFGVSKAVTKENTETQYRWIAYSSITVGCCFVVIFLMGTKEPRMKINLRETSRSR 239

Query: 241 ISWAYWFKKILYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSF 300
           I W+YWF+KILYYQVA+VY+LTRLV+NVSQAYLAF+VI+DL+M QSAKAL+PAIIYICSF
Sbjct: 240 IPWSYWFRKILYYQVAMVYLLTRLVLNVSQAYLAFFVIDDLQMAQSAKALIPAIIYICSF 299

Query: 301 IVSILLQ----------------------------------------------------- 307
           +VS++LQ                                                     
Sbjct: 300 VVSVMLQEIPWNGKRLKAYYCAGGIIWIFCGISILLLPRSINSYMYAISVFIGIANALML 359

Query: 308 VTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQSMSPTVLDNNSSITSL 367
           VT ISMQ+VL+G +L GCAFVCG+LSFLDKMSCG+A+YVLQS+Q  SP V D N      
Sbjct: 360 VTAISMQSVLIGSELGGCAFVCGSLSFLDKMSCGLALYVLQSHQGTSPKV-DVN------ 412

Query: 368 TVLDNNSLISTSYISVTRFGLGLIPAICSLVSVAVTFTMKLHTPYSKPLVEPLL 421
                  +    Y SVTR+GLGL+PA+CSLV V VT+ M+L +   KPL +PLL
Sbjct: 413 -------IKEYFYFSVTRYGLGLVPAVCSLVGVVVTYFMELDSTILKPLCQPLL 459

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|145331127|ref|NP_001078055.1| major facilitator protein [Arabidopsis thaliana] gi|145360981|ref|NP_181957.2| major facilitator protein [Arabidopsis thaliana] gi|22135824|gb|AAM91098.1| AT3g60070/T2O9_50 [Arabidopsis thaliana] gi|27363300|gb|AAO11569.1| At3g60070/T2O9_50 [Arabidopsis thaliana] gi|330255307|gb|AEC10401.1| major facilitator protein [Arabidopsis thaliana] gi|330255308|gb|AEC10402.1| major facilitator protein [Arabidopsis thaliana]

 Score =  577 bits (1488), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 291/474 (61%), Positives = 346/474 (72%), Gaps = 67/474 (14%)

Query: 1   MTSSTVMNYDIENDDSFTQPVGRWSVLYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRG 60
           MTSS ++  + E +D  T+P+GR SV YYG GHMLNDITA+CWFTYLLLFLT IGLSPR 
Sbjct: 1   MTSSVIVGMEEEEEDPSTKPLGRLSVFYYGVGHMLNDITASCWFTYLLLFLTQIGLSPRD 60

Query: 61  AAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTS 120
           AA VMLSGQ+ADGFATIFIGELIDRFGHFKIWH AGS+LVA+SFSSVFGGC+PC +L  +
Sbjct: 61  AAIVMLSGQVADGFATIFIGELIDRFGHFKIWHAAGSLLVAISFSSVFGGCLPCSLLHNN 120

Query: 121 TLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLY 180
           +  +ET+SY +FAAIFN+GWAATQV+HM+MVNCITLNSTSRV LTS RNAF+MVANL LY
Sbjct: 121 SSTIETLSYSMFAAIFNIGWAATQVSHMAMVNCITLNSTSRVALTSSRNAFSMVANLGLY 180

Query: 181 AIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHAR 240
           AIA +VF VS A T  + E+QYRWIAYSSI +GCCFV IFL  T+EPRL++ LR  S AR
Sbjct: 181 AIALVVFGVSEAVTKENTESQYRWIAYSSITVGCCFVVIFLMGTKEPRLRINLRETSRAR 240

Query: 241 ISWAYWFKKILYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSF 300
           I W+YWF+KILYYQVA+VY+LTRLV+NVSQAYLAF+VI+DL+M QSAKAL+PAIIY+CSF
Sbjct: 241 IPWSYWFRKILYYQVAMVYLLTRLVLNVSQAYLAFFVIDDLQMAQSAKALIPAIIYVCSF 300

Query: 301 IVSILLQ----------------------------------------------------- 307
           +VS++LQ                                                     
Sbjct: 301 VVSVMLQEIPWNGKRLKAYYCAGGIIWIFCGISILLLPRSINSYMYAISVFIGIANAVML 360

Query: 308 VTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQSMSPTVLDNNSSITSL 367
           VT ISMQ+VL+G  L GCAFVCG+LSFLDKMSCG+A+YVLQS+Q  SP V D N      
Sbjct: 361 VTSISMQSVLIGSKLGGCAFVCGSLSFLDKMSCGLALYVLQSHQGTSPKV-DVN------ 413

Query: 368 TVLDNNSLISTSYISVTRFGLGLIPAICSLVSVAVTFTMKLHTPYSKPLVEPLL 421
                  +    Y SVTR+GLGL+PA+CSLV V VT+ M+L +   KPL +PLL
Sbjct: 414 -------IKEYFYFSVTRYGLGLVPAVCSLVGVVVTYFMELDSTILKPLCQPLL 460

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	422
TAIR|locus:2101442	458	AT3G60070 "AT3G60070" [Arabido	0.696	0.641	0.714	3e-144
TAIR|locus:2050626	462	AT2G44280 "AT2G44280" [Arabido	0.900	0.822	0.586	3.4e-116
UNIPROTKB|Q6NUT3	480	MFSD12 "Major facilitator supe	0.393	0.345	0.346	2.9e-34
MGI|MGI:3604804	476	Mfsd12 "major facilitator supe	0.398	0.352	0.350	4e-34
ZFIN|ZDB-GENE-030131-4642	507	mfsd12a "major facilitator sup	0.469	0.390	0.331	3.5e-32
WB|WBGene00017530	501	F16H11.1 [Caenorhabditis elega	0.651	0.548	0.283	3.4e-26

TAIR|locus:2101442 AT3G60070 "AT3G60070" [Arabidopsis thaliana (taxid:3702)]

 Score = 1118 (398.6 bits), Expect = 3.0e-144, Sum P(2) = 3.0e-144
 Identities = 210/294 (71%), Positives = 239/294 (81%)

Query:    14 DDSFTQPVGRWSVLYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADG 73
             +D FT+P+GRWSV +YG GHMLNDITA+CWFTYLLLFLT IGLSPR AA VMLSGQ+AD 
Sbjct:     7 EDPFTKPIGRWSVFFYGVGHMLNDITASCWFTYLLLFLTQIGLSPRDAAIVMLSGQVADA 66

Query:    74 FATIFIGELIDRFGHFKIWHXXXXXXXXXXXXXXXXXCMPCRILSTSTLKVETISYCVFA 133
             FATIF GELIDRFGHFKIWH                 C+PC IL   +L +ET SY +FA
Sbjct:    67 FATIFTGELIDRFGHFKIWHAAGSLLVAISFSSVFGGCLPCSILHNDSLTLETFSYSMFA 126

Query:   134 AIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAK 193
             AIFN+GWAATQV+HM+MVNCI+LNSTSRV LTS RNAFTMVANL LYAIA +VF V  A 
Sbjct:   127 AIFNIGWAATQVSHMAMVNCISLNSTSRVALTSSRNAFTMVANLGLYAIALVVFGVIKAG 186

Query:   194 THADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISWAYWFKKILYY 253
             +  D E QYRWIAYSSI IGCCFV IFL  T+EPRL++ L+  S ARI W YWF+KILYY
Sbjct:   187 SKEDTETQYRWIAYSSITIGCCFVVIFLMGTKEPRLRIDLKETSRARIPWVYWFRKILYY 246

Query:   254 QVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQ 307
             QVA+VY+LTRLV+NVSQAYLAF+VI+DL+M QSAKALVPAIIYICSF+VS+LLQ
Sbjct:   247 QVAMVYLLTRLVLNVSQAYLAFFVIDDLQMDQSAKALVPAIIYICSFVVSVLLQ 300

GO:0003674 "molecular_function" evidence=ND

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0016020 "membrane" evidence=ISS

TAIR|locus:2050626 AT2G44280 "AT2G44280" [Arabidopsis thaliana (taxid:3702)]

 Score = 1145 (408.1 bits), Expect = 3.4e-116, P = 3.4e-116
 Identities = 224/382 (58%), Positives = 281/382 (73%)

Query:     1 MTSSTVMNYDIENDDSFTQPVGRWSVLYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRG 60
             MTSS ++  + E +D  T+P+GR SV YYG GHMLNDITA+CWFTYLLLFLT IGLSPR 
Sbjct:     1 MTSSVIVGMEEEEEDPSTKPLGRLSVFYYGVGHMLNDITASCWFTYLLLFLTQIGLSPRD 60

Query:    61 AAAVMLSGQIADGFATIFIGELIDRFGHFKIWHXXXXXXXXXXXXXXXXXCMPCRILSTS 120
             AA VMLSGQ+ADGFATIFIGELIDRFGHFKIWH                 C+PC +L  +
Sbjct:    61 AAIVMLSGQVADGFATIFIGELIDRFGHFKIWHAAGSLLVAISFSSVFGGCLPCSLLHNN 120

Query:   121 TLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLY 180
             +  +ET+SY +FAAIFN+GWAATQV+HM+MVNCITLNSTSRV LTS RNAF+MVANL LY
Sbjct:   121 SSTIETLSYSMFAAIFNIGWAATQVSHMAMVNCITLNSTSRVALTSSRNAFSMVANLGLY 180

Query:   181 AIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHAR 240
             AIA +VF VS A T  + E+QYRWIAYSSI +GCCFV IFL  T+EPRL++ LR  S AR
Sbjct:   181 AIALVVFGVSEAVTKENTESQYRWIAYSSITVGCCFVVIFLMGTKEPRLRINLRETSRAR 240

Query:   241 ISWAYWFKKILYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSF 300
             I W+YWF+KILYYQVA+VY+LTRLV+NVSQAYLAF+VI+DL+M QSAKAL+PAIIY+CSF
Sbjct:   241 IPWSYWFRKILYYQVAMVYLLTRLVLNVSQAYLAFFVIDDLQMAQSAKALIPAIIYVCSF 300

Query:   301 IVSILLQVTGISMQNVLVGEDLSGCAFV-CGTLSFLDKMSCGIAVYVLQSYQSMSPTVLD 359
             +VS++LQ    + + +       G  ++ CG    L   S    +Y +  +  ++  V+ 
Sbjct:   301 VVSVMLQEIPWNGKRLKAYYCAGGIIWIFCGISILLLPRSINSYMYAISVFIGIANAVM- 359

Query:   360 NNSSITSLTVLDNNSLISTSYI 381
               +SI+  +VL  + L   +++
Sbjct:   360 LVTSISMQSVLIGSKLGGCAFV 381

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q6NUT3 MFSD12 "Major facilitator superfamily domain-containing protein 12" [Homo sapiens (taxid:9606)]

 Score = 274 (101.5 bits), Expect = 2.9e-34, Sum P(2) = 2.9e-34
 Identities = 61/176 (34%), Positives = 93/176 (52%)

Query:    19 QPVGRWSVLYYGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATI 77
             +P+   + L Y  GH LND+ A+ WFTYLLL+L  +   S RGA  ++L GQ+ADG  T 
Sbjct:    15 RPLSLVARLSYAVGHFLNDLCASMWFTYLLLYLHSVRAYSSRGAGLLLLLGQVADGLCTP 74

Query:    78 FIGELIDR-------FGHFKIWHXXXXXXXXXXXXXXXXXCMPCRILSTSTLKVETISYC 130
              +G   DR       +G  K WH                 C+ C   +     +  + Y 
Sbjct:    75 LVGYEADRAASCCARYGPRKAWHLVGTVCVLLSFPFIFSPCLGCGAATPEWAAL--LYYG 132

Query:   131 VFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIV 186
              F  IF  GWA+TQ++H+S++  +  N   +V LT+ R AFT+VAN+++Y  A+++
Sbjct:   133 PFIVIFQFGWASTQISHLSLIPELVTNDHEKVELTALRYAFTVVANITVYGAAWLL 188

GO:0006810 "transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

MGI|MGI:3604804 Mfsd12 "major facilitator superfamily domain containing 12" [Mus musculus (taxid:10090)]

 Score = 275 (101.9 bits), Expect = 4.0e-34, Sum P(2) = 4.0e-34
 Identities = 62/177 (35%), Positives = 91/177 (51%)

Query:    27 LYYGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDR 85
             L +  GH LND+ A  WFTYLLLFL  + G S RGA  ++L GQ+ADG  T  +G   DR
Sbjct:    22 LSFAVGHFLNDLCAGMWFTYLLLFLHSVRGYSSRGAGLLLLLGQVADGLCTPLVGYEADR 81

Query:    86 F-----GHFKIWHXXXXXXXXXXXXXXXXXCMPCRILSTSTLKVETISYCVFAAIFNVGW 140
                   G  K WH                 C+ C   +     +  + Y  F  +F  GW
Sbjct:    82 ASCVRCGPRKAWHLAGTVCVLLSFPFIFSPCLGCGEATPEWAAL--LYYGPFIVVFQFGW 139

Query:   141 AATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHAD 197
             AATQ+AH+S++  +  +   +V LT+ R AFT+VAN+++Y  A+++  +     H +
Sbjct:   140 AATQIAHLSLIPELVTSDHEKVELTALRYAFTVVANITVYGAAWLLLHLQ-GSAHGE 195

GO:0003674 "molecular_function" evidence=ND

GO:0006810 "transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

ZFIN|ZDB-GENE-030131-4642 mfsd12a "major facilitator superfamily domain containing 12a" [Danio rerio (taxid:7955)]

 Score = 274 (101.5 bits), Expect = 3.5e-32, Sum P(2) = 3.5e-32
 Identities = 71/214 (33%), Positives = 105/214 (49%)

Query:    27 LYYGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDR 85
             L Y  GH LND+ A+ WFTYLL+F   + G     A  ++L GQIADG  T  IG   DR
Sbjct:    15 LSYSVGHFLNDLCASMWFTYLLVFYHSVLGFENTYAGVLLLVGQIADGVCTPLIGYESDR 74

Query:    86 ------FGHFKIWHXXXXXXXXXXXXXXXXXCMPCRILSTSTLKVETISYCVFAAIFNVG 139
                   +G  K WH                 C+ C  L+T    V    +  F  IF  G
Sbjct:    75 TPGCGSYGKRKTWHLVGTISVLLSFPFIFNQCLGCD-LNTPQW-VSVTYFAPFIIIFQFG 132

Query:   140 WAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLE 199
             WAATQ++H+S++  +      +V LT+ R AFT++AN+++YA+A+++F        A ++
Sbjct:   133 WAATQISHLSLIPELVSCEHEKVELTAYRYAFTVIANITVYAVAWLLFHFQEGDDPAVMD 192

Query:   200 NQ-------YRWIAYSSIFIGCCFVGIFLSRTEE 226
             N        +R ++   + IG  F  +F   T E
Sbjct:   193 NLGSVDIPVFRNLSLIVVGIGAVFTFLFHLGTRE 226

GO:0003674 "molecular_function" evidence=ND

WB|WBGene00017530 F16H11.1 [Caenorhabditis elegans (taxid:6239)]

 Score = 300 (110.7 bits), Expect = 3.4e-26, P = 3.4e-26
 Identities = 85/300 (28%), Positives = 144/300 (48%)

Query:    84 DRFGHFKIWHXXXXXXXXXXXXXXXXXCMPCRILSTSTLKVETISYCVFAAIFNVGWAAT 143
             D+ G    WH                 C  C+  ++  LKV  + +  F  +F  GWA+ 
Sbjct:   105 DKIGRRMSWHLIGTVLVSLSFPMIFNKCFLCKSTTSEWLKV--LWFVPFIMVFQFGWASV 162

Query:   144 QVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLY-AIAFIVFSVSTAKTHA---DLE 199
             Q++H++++  ++    SR  + S R AFT++ANLS+Y A+A+++ S ST  T     D  
Sbjct:   163 QISHLALIPELSSVPASRATMNSLRYAFTVIANLSVYFALAWLL-SESTGHTSIGPWDFS 221

Query:   200 NQYRWIAYSSIFIGCCFVGIFLSRTEEP-RLKMGLRGNSHA-------RISWAYWFKKIL 251
             + +R   +  + +G     +F + T EP   +   R NS +       R+ W  WF  + 
Sbjct:   222 H-FRLAGWLVVVLGITVAFVFYAFTREPTNYRRFSRLNSFSSDASELVRMHWTSWFGHVQ 280

Query:   252 YYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSIL--LQVT 309
             +YQ+AL+YML+RL +N+SQ Y  FY+       +   A++P + Y+ SF VS++  L V 
Sbjct:   281 FYQIALLYMLSRLYINISQVYFPFYITMTQNYEKKYVAILPMVAYLSSFSVSMVNSLPVV 340

Query:   310 GISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQSMSPTVLDNNSSITSLTV 369
                 + +L    L+     C  +  LD    G  +Y L     ++  +L     ITSL++
Sbjct:   341 SKLSKKILYSFGLASGMLSCAVM-MLDLP--GWKIYALAVGIGIAQAIL----LITSLSI 393

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	422
pfam13347	425	pfam13347, MFS_2, MFS/sugar transport protein	2e-39
COG2211	467	COG2211, MelB, Na+/melibiose symporter and related	4e-13
PRK09848	448	PRK09848, PRK09848, glucuronide transporter; Provi	8e-08
TIGR00792	437	TIGR00792, gph, sugar (Glycoside-Pentoside-Hexuron	3e-07

>gnl|CDD|222060 pfam13347, MFS_2, MFS/sugar transport protein

 Score =  146 bits (370), Expect = 2e-39
 Identities = 83/450 (18%), Positives = 150/450 (33%), Gaps = 96/450 (21%)

Query: 27  LYYGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELID- 84
           + YG G + N+I  A   TYLL F TD+ GLS      + L  +I D F    +G +ID 
Sbjct: 2   IGYGLGDLGNNIIYALLSTYLLYFYTDVLGLSAAAVGTIFLVARIWDAFTDPIVGAIIDR 61

Query: 85  ---RFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWA 141
              R+G F+ W   G++ +A+S   +F    P  +  T+ L    I+Y     +  + + 
Sbjct: 62  TRTRWGKFRPWLLIGAIPLAISLVLLFA--TPFGLSMTAKLIYAFITYI----LLGLAYT 115

Query: 142 ATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQ 201
              + + S++  +T +   R  L S R     +  L +  IA  + ++       +    
Sbjct: 116 FVNIPYWSLIPVLTRDPKERTSLASYRRIGATIGGLLVAVIAPPLVALLGGG---NGAKG 172

Query: 202 YRWIAYSSIFIGCCFVGIFLSRT-EEPRLKMGLRGNSHARISWAYWFKKILYYQVALVYM 260
           Y   A     +      I  + T E   +    +     R  +   FK      + L+Y+
Sbjct: 173 YFLAALIIAILAVVGFLICFAGTKERVSVPPEQKEKVSLRDMFKALFKNRPLLILLLLYL 232

Query: 261 LTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAII----------------------YIC 298
           L  L + V    L +Y    L        L+                          ++ 
Sbjct: 233 LNALAMAVRNGLLLYYFTYVLGNAGLFSVLLLIGTIAAILGAPLWPWLAKRFGKKRTFLL 292

Query: 299 SFIVSILLQV---------------------TGISMQNVLV----------GEDLSG--- 324
             +++ +  V                      G+ +  +L           GE  +G   
Sbjct: 293 GMLLAAIGLVLLFFLPPGSLWLFLVLVVLAGIGLGLATLLPWAMLADVVDYGEWKTGKRR 352

Query: 325 CAFVCGTLSFLDKMSCGIAVYV------LQSYQSMSPTVLDNNSSITSLTVLDNNSLIST 378
                   SF DK+   +   +         Y +                   N +  S 
Sbjct: 353 EGITFSLYSFADKLGGALGGAIVGLLLAFAGYVA-------------------NATAQSA 393

Query: 379 SYISVTRFGLGLIPAICSLVSVAVTFTMKL 408
           + +S  R    LIPA+ +L+++ +     L
Sbjct: 394 AALSGIRLLFTLIPAVLALLALLILRFYPL 423

This family is part of the major facilitator superfamily of membrane transport proteins. Length = 425

>gnl|CDD|225121 COG2211, MelB, Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

 Score = 70.4 bits (173), Expect = 4e-13
 Identities = 57/287 (19%), Positives = 107/287 (37%), Gaps = 21/287 (7%)

Query: 29  YGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELID--- 84
           YG G   ++        YLL F TD+ GLS   A  + L  +I D      +G ++D   
Sbjct: 17  YGLGDFASNFAFGIVVLYLLFFYTDVFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTR 76

Query: 85  -RFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAAT 143
            R+G F+ W   G++  A+    +F       I    ++  + I   V   +  +G+   
Sbjct: 77  SRWGRFRPWLLWGAIPFAIVAVLLF-------ITPDFSMTGKLIYALVTYMLLGLGYTLV 129

Query: 144 QVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYR 203
            + + ++   IT +   R  LTS R  F  +  L L A+ F             L   Y+
Sbjct: 130 NIPYGALGPEITQDPQERASLTSWRMVFASLGGL-LVAVLFPPLVKLFGGGDKAL--GYQ 186

Query: 204 WIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISWAYWFKKIL----YYQVALVY 259
             A     IG   +       +E  ++      +  ++     F  I        + L+ 
Sbjct: 187 GTALVLGVIGVILLLFCFFNVKERVVETQ-PTKTGVKLKLKDSFLLIFKNRPLLLLLLMN 245

Query: 260 MLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILL 306
           +L  +  N+  + + +YV   L   +    L+  +      ++ ++L
Sbjct: 246 LLLFIAFNIRGSIMVYYVTYVLGDPELFAYLL-LLASGAGLLIGLIL 291

Length = 467

>gnl|CDD|182109 PRK09848, PRK09848, glucuronide transporter; Provisional

 Score = 53.6 bits (129), Expect = 8e-08
 Identities = 55/281 (19%), Positives = 112/281 (39%), Gaps = 35/281 (12%)

Query: 19  QPVGRWSVLYYGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATI 77
           Q +   +++ Y  G + N+   A    +LL + TD+ G+    A  ++L  ++ D FA +
Sbjct: 3   QQLSWRTIVGYSLGDVANNFAFAMGALFLLSYYTDVAGVGAAAAGTMLLLVRVFDAFADV 62

Query: 78  FIGELID----RFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVETISYCVFA 133
           F G ++D    R+G F+ +   G+  + +    VF   +P     +S +    ++Y    
Sbjct: 63  FAGRVVDSVNTRWGKFRPFLLFGTAPLMIFSVLVF--WVPTDWSHSSKVVYAYLTY---- 116

Query: 134 AIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAK 193
               + ++   + + S+   +T    SR  L + R    + A+L+   +AF++       
Sbjct: 117 MGLGLCYSLVNIPYGSLATAMTQQPQSRARLGAAR---GIAASLTFVCLAFLIGPSIKNS 173

Query: 194 THADLENQYRWIAYSSIFIGCCFVGIFLSRTEE--------PRLKMG---LRGNSHARIS 242
           +  ++ + Y +        G     I    T E        P LK+    L+ N      
Sbjct: 174 SPEEMVSVYHFWTIVLAIAGMVLYFICFKSTRENVVRIVAQPSLKISLQTLKRNR----- 228

Query: 243 WAYWFKKILYYQVALVYMLTRLVVNVSQAYLAFYVINDLRM 283
                   +    AL  +++   V+ S  +   YV+ND  +
Sbjct: 229 -----PLFMLCIGALCVLISTFAVSASSLFYVRYVLNDTGL 264

Length = 448

>gnl|CDD|233128 TIGR00792, gph, sugar (Glycoside-Pentoside-Hexuronide) transporter

 Score = 51.9 bits (125), Expect = 3e-07
 Identities = 44/167 (26%), Positives = 67/167 (40%), Gaps = 23/167 (13%)

Query: 29  YGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELID--- 84
           YG G   N+   A   TYLL F TD+ GLS      + L  +I D      +G ++D   
Sbjct: 4   YGFGDFGNNFIFAIVSTYLLFFYTDVLGLSAAFVGTLFLVARILDAITDPIMGNIVDRTR 63

Query: 85  -RFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAAT 143
            R+G F+ W     +L+     S+        +L  +T         V+A I  +     
Sbjct: 64  TRWGKFRPW-----LLIGAIPFSIVL------VLLFTTPDFSATGKLVYAYITYILLGLF 112

Query: 144 ----QVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIV 186
                + + S+V  ITL+   R  L++ R      A L    +A IV
Sbjct: 113 YSFVNIPYWSLVPAITLDPRERESLSTFRRFG---ATLGGLLVAVIV 156

The Glycoside-Pentoside-Hexuronide (GPH):Cation Symporter Family (TC 2.A.2) GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 437

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	422
COG2211	467	MelB Na+/melibiose symporter and related transport	100.0
PRK11462	460	putative transporter; Provisional	100.0
PRK10429	473	melibiose:sodium symporter; Provisional	100.0
PRK09669	444	putative symporter YagG; Provisional	100.0
PF13347	428	MFS_2: MFS/sugar transport protein	100.0
PRK09848	448	glucuronide transporter; Provisional	100.0
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	100.0
KOG4830	412	consensus Predicted sugar transporter [Carbohydrat	99.93
PRK10504	471	putative transporter; Provisional	99.92
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	99.89
PRK11902	402	ampG muropeptide transporter; Reviewed	99.85
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	99.85
TIGR00900	365	2A0121 H+ Antiporter protein.	99.84
PRK03545	390	putative arabinose transporter; Provisional	99.84
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	99.83
PRK11010	491	ampG muropeptide transporter; Validated	99.82
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.82
PRK11646	400	multidrug resistance protein MdtH; Provisional	99.82
PRK10473	392	multidrug efflux system protein MdtL; Provisional	99.82
PRK09874	408	drug efflux system protein MdtG; Provisional	99.82
TIGR00893	399	2A0114 d-galactonate transporter.	99.81
PRK11663	434	regulatory protein UhpC; Provisional	99.81
PRK10489	417	enterobactin exporter EntS; Provisional	99.81
COG2270	438	Permeases of the major facilitator superfamily [Ge	99.8
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	99.79
PRK09528	420	lacY galactoside permease; Reviewed	99.79
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	99.79
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.79
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	99.78
TIGR00891	405	2A0112 putative sialic acid transporter.	99.78
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	99.78
PRK10213	394	nepI ribonucleoside transporter; Reviewed	99.77
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	99.77
TIGR00897	402	2A0118 polyol permease family. This family of prot	99.76
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	99.76
PRK14995	495	methyl viologen resistance protein SmvA; Provision	99.75
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	99.75
PRK05122	399	major facilitator superfamily transporter; Provisi	99.74
PRK10054	395	putative transporter; Provisional	99.74
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	99.74
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	99.74
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	99.74
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	99.74
TIGR00901	356	2A0125 AmpG-related permease.	99.74
PRK15403	413	multidrug efflux system protein MdtM; Provisional	99.73
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	99.73
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.73
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	99.72
PRK09705	393	cynX putative cyanate transporter; Provisional	99.72
PRK12382	392	putative transporter; Provisional	99.72
PRK10091	382	MFS transport protein AraJ; Provisional	99.72
PRK11195	393	lysophospholipid transporter LplT; Provisional	99.72
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	99.72
PRK15011	393	sugar efflux transporter B; Provisional	99.72
PRK11652	394	emrD multidrug resistance protein D; Provisional	99.71
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	99.71
PRK12307	426	putative sialic acid transporter; Provisional	99.7
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	99.69
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.69
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	99.69
PRK03699	394	putative transporter; Provisional	99.69
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.69
PRK03633	381	putative MFS family transporter protein; Provision	99.69
PRK10406	432	alpha-ketoglutarate transporter; Provisional	99.69
PRK10133	438	L-fucose transporter; Provisional	99.68
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	99.68
TIGR00895	398	2A0115 benzoate transport.	99.68
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.67
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.67
PLN00028	476	nitrate transmembrane transporter; Provisional	99.64
TIGR00896	355	CynX cyanate transporter. This family of proteins	99.63
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	99.63
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.62
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	99.62
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	99.62
PRK10642	490	proline/glycine betaine transporter; Provisional	99.62
PRK03893	496	putative sialic acid transporter; Provisional	99.61
PRK09952	438	shikimate transporter; Provisional	99.61
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	99.6
PRK10077	479	xylE D-xylose transporter XylE; Provisional	99.6
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	99.59
PRK15075	434	citrate-proton symporter; Provisional	99.59
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	99.59
PRK11043	401	putative transporter; Provisional	99.59
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	99.59
KOG2532	466	consensus Permease of the major facilitator superf	99.59
PRK10207	489	dipeptide/tripeptide permease B; Provisional	99.58
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	99.53
TIGR00788	468	fbt folate/biopterin transporter. The only functio	99.52
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	99.51
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	99.49
TIGR00898	505	2A0119 cation transport protein.	99.45
KOG3764	464	consensus Vesicular amine transporter [Intracellul	99.45
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	99.43
TIGR00805	633	oat sodium-independent organic anion transporter.	99.42
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.41
PRK09584	500	tppB putative tripeptide transporter permease; Rev	99.41
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	99.39
PRK15462	493	dipeptide/tripeptide permease D; Provisional	99.34
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	99.34
KOG2533	495	consensus Permease of the major facilitator superf	99.31
KOG0637	498	consensus Sucrose transporter and related proteins	99.28
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	99.27
KOG1330	493	consensus Sugar transporter/spinster transmembrane	99.24
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	99.17
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.16
KOG0569	485	consensus Permease of the major facilitator superf	99.08
PRK09705	393	cynX putative cyanate transporter; Provisional	99.0
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	98.99
KOG2615	451	consensus Permease of the major facilitator superf	98.98
PTZ00207	591	hypothetical protein; Provisional	98.98
PRK10642	490	proline/glycine betaine transporter; Provisional	98.97
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	98.94
KOG2325	488	consensus Predicted transporter/transmembrane prot	98.93
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	98.9
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	98.9
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	98.89
PRK10504	471	putative transporter; Provisional	98.89
PRK09528	420	lacY galactoside permease; Reviewed	98.88
TIGR00897	402	2A0118 polyol permease family. This family of prot	98.88
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	98.87
PRK15011	393	sugar efflux transporter B; Provisional	98.87
PRK03545	390	putative arabinose transporter; Provisional	98.86
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	98.85
TIGR00893	399	2A0114 d-galactonate transporter.	98.83
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	98.83
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	98.81
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	98.81
PRK11663	434	regulatory protein UhpC; Provisional	98.81
PRK05122	399	major facilitator superfamily transporter; Provisi	98.81
PRK10489	417	enterobactin exporter EntS; Provisional	98.8
PRK09952	438	shikimate transporter; Provisional	98.77
PRK03633	381	putative MFS family transporter protein; Provision	98.74
PRK03699	394	putative transporter; Provisional	98.73
PRK09874	408	drug efflux system protein MdtG; Provisional	98.72
PRK12382	392	putative transporter; Provisional	98.72
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	98.71
PRK10077	479	xylE D-xylose transporter XylE; Provisional	98.71
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	98.7
KOG0254	513	consensus Predicted transporter (major facilitator	98.68
TIGR00892	455	2A0113 monocarboxylate transporter 1.	98.68
PRK15075	434	citrate-proton symporter; Provisional	98.67
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	98.66
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	98.63
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	98.62
KOG2563	480	consensus Permease of the major facilitator superf	98.61
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	98.61
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	98.61
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	98.61
TIGR00896	355	CynX cyanate transporter. This family of proteins	98.6
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	98.6
PRK03893	496	putative sialic acid transporter; Provisional	98.59
PRK10091	382	MFS transport protein AraJ; Provisional	98.58
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	98.58
PF13347	428	MFS_2: MFS/sugar transport protein	98.58
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	98.57
PRK10406	432	alpha-ketoglutarate transporter; Provisional	98.56
PRK14995	495	methyl viologen resistance protein SmvA; Provision	98.56
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	98.55
PRK09848	448	glucuronide transporter; Provisional	98.54
TIGR00900	365	2A0121 H+ Antiporter protein.	98.53
TIGR00891	405	2A0112 putative sialic acid transporter.	98.53
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	98.51
PRK11010	491	ampG muropeptide transporter; Validated	98.51
PLN00028	476	nitrate transmembrane transporter; Provisional	98.51
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	98.51
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	98.49
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	98.48
KOG2816	463	consensus Predicted transporter ADD1 (major facili	98.47
PRK12307	426	putative sialic acid transporter; Provisional	98.47
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	98.46
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	98.45
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	98.44
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	98.44
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	98.43
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	98.43
TIGR00895	398	2A0115 benzoate transport.	98.43
PRK10054	395	putative transporter; Provisional	98.38
PF12832	77	MFS_1_like: MFS_1 like family	98.38
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	98.36
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	98.35
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	98.33
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	98.33
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	98.31
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	98.3
KOG0569	485	consensus Permease of the major facilitator superf	98.29
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	98.26
PRK11646	400	multidrug resistance protein MdtH; Provisional	98.25
PRK10213	394	nepI ribonucleoside transporter; Reviewed	98.24
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	98.23
PRK11902	402	ampG muropeptide transporter; Reviewed	98.23
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	98.2
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	98.2
PRK11195	393	lysophospholipid transporter LplT; Provisional	98.19
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	98.17
KOG3626	735	consensus Organic anion transporter [Secondary met	98.16
KOG2532	466	consensus Permease of the major facilitator superf	98.14
PRK10473	392	multidrug efflux system protein MdtL; Provisional	98.14
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	98.13
TIGR00901	356	2A0125 AmpG-related permease.	98.12
PRK10429	473	melibiose:sodium symporter; Provisional	98.12
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	98.12
PRK09669	444	putative symporter YagG; Provisional	98.11
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	98.1
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	98.08
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	98.08
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	98.05
TIGR00898	505	2A0119 cation transport protein.	98.0
KOG3574	510	consensus Acetyl-CoA transporter [Inorganic ion tr	97.93
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	97.9
COG2211	467	MelB Na+/melibiose symporter and related transport	97.85
PRK11043	401	putative transporter; Provisional	97.84
PRK11462	460	putative transporter; Provisional	97.84
PRK10133	438	L-fucose transporter; Provisional	97.79
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	97.73
COG2270	438	Permeases of the major facilitator superfamily [Ge	97.66
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	97.62
TIGR00788	468	fbt folate/biopterin transporter. The only functio	97.59
PRK11652	394	emrD multidrug resistance protein D; Provisional	97.57
PRK10207	489	dipeptide/tripeptide permease B; Provisional	97.51
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	97.46
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	97.46
KOG2533	495	consensus Permease of the major facilitator superf	97.17
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	97.16
KOG3762	618	consensus Predicted transporter [General function	97.15
PRK15403	413	multidrug efflux system protein MdtM; Provisional	97.12
COG0477	338	ProP Permeases of the major facilitator superfamil	97.05
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	97.03
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	96.71
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	96.7
PRK09584	500	tppB putative tripeptide transporter permease; Rev	96.68
KOG0254	513	consensus Predicted transporter (major facilitator	96.57
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	96.46
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	96.34
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	96.32
PF13000	544	Acatn: Acetyl-coenzyme A transporter 1; InterPro:	95.96
KOG3764	464	consensus Vesicular amine transporter [Intracellul	95.67
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	95.63
PF03219	491	TLC: TLC ATP/ADP transporter; InterPro: IPR004667	95.1
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	94.74
TIGR00805	633	oat sodium-independent organic anion transporter.	94.2
PF05978	156	UNC-93: Ion channel regulatory protein UNC-93; Int	94.2
KOG3762	618	consensus Predicted transporter [General function	93.5
KOG3098	461	consensus Uncharacterized conserved protein [Funct	93.08
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	92.15
PF00854	372	PTR2: POT family; InterPro: IPR000109 This entry r	92.13
PRK15462	493	dipeptide/tripeptide permease D; Provisional	90.97
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	89.47
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	89.28
PF06779	85	DUF1228: Protein of unknown function (DUF1228); In	89.25
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	89.17
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	89.1
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	88.68
COG3202	509	ATP/ADP translocase [Energy production and convers	87.87
KOG1237	571	consensus H+/oligopeptide symporter [Amino acid tr	87.83
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	87.48
PF07672	267	MFS_Mycoplasma: Mycoplasma MFS transporter; InterP	85.68
PRK03612	521	spermidine synthase; Provisional	84.11
KOG3098	461	consensus Uncharacterized conserved protein [Funct	83.0
KOG2563	480	consensus Permease of the major facilitator superf	81.58

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=100.00  E-value=1.3e-62  Score=484.92  Aligned_cols=382  Identities=20%  Similarity=0.274  Sum_probs=317.1

Q ss_pred             CCCCCCCceeeeeeeccchhHHHHHHHHHHHHHHHHHHh-CCChhHHHHHHHHHHHHhhhhhhhhhhhhc----ccCCch
Q 014600           16 SFTQPVGRWSVLYYGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELID----RFGHFK   90 (422)
Q Consensus        16 ~~~~~l~~~~~~~y~~g~~~~~~~~~~~~~~l~~f~t~~-gls~~~~g~i~~i~~l~~ai~~p~~G~lsD----r~Grrr   90 (422)
                      +.++|++.+||++||.||++.++.+.....|+++||||+ |+|++.+|.++++.|++||+.||++|.++|    ||||||
T Consensus         4 ~~~~kLs~~eki~Yg~gd~~~~~~~~~~~~yLl~fYTdv~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfR   83 (467)
T COG2211           4 SSSKKLSLKEKIGYGLGDFASNFAFGIVVLYLLFFYTDVFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFR   83 (467)
T ss_pred             cccCcccHHHHHhhcchhhHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHhcchheeeeccccccccccc
Confidence            346789999999999999999999999999999999999 999999999999999999999999999999    599999


Q ss_pred             hHHHHHHHHHHHHHHHhhcCccCccccCCccchhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCccchhhHHHHHHH
Q 014600           91 IWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNA  170 (422)
Q Consensus        91 p~ll~g~i~~~i~~~~lf~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~al~~~~t~~~~eR~~l~~~~~~  170 (422)
                      ||+++|+++.++..+++|.+  | +++...+..|.+++|+    +++++|+++++||.|+.+++|+|++||.+++++|+.
T Consensus        84 P~lL~g~ip~~i~~~l~F~~--p-~~~~~~k~~ya~vtY~----l~~l~YT~vniPy~al~~~iT~d~~ER~~l~s~R~~  156 (467)
T COG2211          84 PWLLWGAIPFAIVAVLLFIT--P-DFSMTGKLIYALVTYM----LLGLGYTLVNIPYGALGPEITQDPQERASLTSWRMV  156 (467)
T ss_pred             HHHHHHhHHHHHHHHHHHcC--C-CcccCcchHHHHHHHH----HHHHHHHheeCchhhcchhhcCCHHHHHHHHHHHHH
Confidence            99999999999999999963  4 2333455666666665    799999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhccCCCCCchHHHHHHHHHHHHHHHHHHHhhhhccccCccccccc-C--CCcchhhhHHHHH
Q 014600          171 FTMVANLSLYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGL-R--GNSHARISWAYWF  247 (422)
Q Consensus       171 ~~~ig~~l~~~~~~~l~~~~~~~g~~~~~~~~~~~~~i~~~i~~i~~~i~~~~~~E~~~~~~~-~--~~~~~~~~~~~~~  247 (422)
                      ++++|+++...+.+|++..++   .+|...||+..+.+.++++++..+.|++.+|||+.+..+ +  ++.+.++++..++
T Consensus       157 ~~~~g~~l~~~~~~plv~~~g---~~~~~~g~~~~~~~~~vi~~i~~l~~~~~v~ER~~~~~~~~~~~~~~~~~~~~~~~  233 (467)
T COG2211         157 FASLGGLLVAVLFPPLVKLFG---GGDKALGYQGTALVLGVIGVILLLFCFFNVKERVVETQPTKTGVKLKLKDSFLLIF  233 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHHhC---CCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcccCccccCcccccccHHHHHHHHH
Confidence            999999999999999998765   244578999999999999999999999999999864332 2  3556677788899


Q ss_pred             HhHHHHHHHHHHHHHHHHHHhhh---HHHHHHhhhccCccchhH------h---HHHHH-----------HHHHHHHHHH
Q 014600          248 KKILYYQVALVYMLTRLVVNVSQ---AYLAFYVINDLRMGQSAK------A---LVPAI-----------IYICSFIVSI  304 (422)
Q Consensus       248 ~n~~f~~~~~~~~~~~~~~~~~~---~y~~~y~~~~~~l~~~~~------~---~iP~~-----------~~~~~~~~~~  304 (422)
                      |||+++.+++.+++...+.+...   .||..|+.++.++.+...      +   ..+.+           ++..+.++..
T Consensus       234 ~Nrp~~~~l~~~l~~~~~~~i~~s~~~yy~~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~  313 (467)
T COG2211         234 KNRPLLLLLLMNLLLFIAFNIRGSIMVYYVTYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLA  313 (467)
T ss_pred             ccchHHHHHHHHHHHHHHHHHHhhhhheeEEEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHH
Confidence            99999988888888777665444   455555554444333221      0   01111           1222222211


Q ss_pred             HHH-------------------HH-----------------HhhhhhhhhcCccccccceehhhHHHHHHHHHHHHHHHH
Q 014600          305 LLQ-------------------VT-----------------GISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQ  348 (422)
Q Consensus       305 ~~~-------------------v~-----------------~~~~~~~~~g~r~~g~~~~~s~~~~~~K~~~a~~~~i~g  348 (422)
                      ++.                   +.                 ..+.+|++||+|+||.  +||.++|.+|+|++++..+.|
T Consensus       314 i~~~~~~f~~~~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi--~~s~~tF~~K~g~ala~~~~g  391 (467)
T COG2211         314 VGYLLLYFTPAGSVVLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGI--VYSGMTFFRKLGLALAGFIPG  391 (467)
T ss_pred             HHHHHHHhhcCcchHHHHHHHHHHHHHhhccccccHHHhcchhhHHHHHhCCCchhh--HHHHHHHHHHHHHHHHHHHHH
Confidence            111                   00                 1345899999999999  999999999999999999999


Q ss_pred             HhHhhCCCccCCCCcccccccccCCCccchHHHHHHHHHHhhHhHHHHHHHHHHHHhccCCCcCchhhhhhhcC
Q 014600          349 SYQSMSPTVLDNNSSITSLTVLDNNSLISTSYISVTRFGLGLIPAICSLVSVAVTFTMKLHTPYSKPLVEPLLQ  422 (422)
Q Consensus       349 ~~l~~~Gy~~~~~~~~~~~~~~~~~~~q~~~~~~~i~~~~~~~P~i~~l~~~~~~~~y~l~~~~~~~i~~~l~~  422 (422)
                      ++|+..||+++.             ++|+++++++|+.++.++|+++.+++++.+.+||+|+|+|++|+|||.|
T Consensus       392 ~~L~~~Gyv~~~-------------~~Q~~~al~gI~~~~~~~Pa~l~l~~~i~~~~y~L~~~~~~~I~~eL~~  452 (467)
T COG2211         392 WILGAIGYVPNV-------------SAQSASALFGIRFLFIILPALLLLLAAIIIFFYKLNEKMHKEIIEELEQ  452 (467)
T ss_pred             HHHHHcCCCCCc-------------ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Confidence            999999999962             3799999999999999999999999999999999999999999999976

>PRK11462 putative transporter; Provisional

Probab=100.00  E-value=4.8e-55  Score=444.13  Aligned_cols=377  Identities=15%  Similarity=0.198  Sum_probs=302.1

Q ss_pred             CCCCceeeeeeeccchhHHHHHHHHHHHHHHHHHHh-CCChhHHHHHHHHHHHHhhhhhhhhhhhhc----ccCCchhHH
Q 014600           19 QPVGRWSVLYYGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELID----RFGHFKIWH   93 (422)
Q Consensus        19 ~~l~~~~~~~y~~g~~~~~~~~~~~~~~l~~f~t~~-gls~~~~g~i~~i~~l~~ai~~p~~G~lsD----r~Grrrp~l   93 (422)
                      +++++++|++||+||++.++.+.+...|+++||||+ |++++.+|++++++|+||+++||++|+++|    ||||||||+
T Consensus         4 ~~l~~~~k~~Yg~g~~~~~~~~~~~~~~l~~fyt~~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~i   83 (460)
T PRK11462          4 EVLSVKEKIGYGMGDAASHIIFDNVMLYMMFFYTDIFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWV   83 (460)
T ss_pred             CcccHhHHHhhccchhhhhHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhH
Confidence            579999999999999999999999999999999999 999999999999999999999999999999    599999999


Q ss_pred             HHHHHHHHHHHHHhhcCccCccccCCccchhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCccchhhHHHHHHHHHH
Q 014600           94 GAGSVLVAVSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTM  173 (422)
Q Consensus        94 l~g~i~~~i~~~~lf~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~al~~~~t~~~~eR~~l~~~~~~~~~  173 (422)
                      ++|+++.+++++++|.  .| ++++    ....+++.+..+++.++|++.++||.++.+|+++|+|||++++++|+.++.
T Consensus        84 l~g~i~~~i~~~llf~--~p-~~s~----~~~~~y~~~~~~~~~~~~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~  156 (460)
T PRK11462         84 LFGALPFGIVCVLAYS--TP-DLSM----NGKMIYAAITYTLLTLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLAT  156 (460)
T ss_pred             hHHHHHHHHHHHHHHh--CC-CCCc----chHHHHHHHHHHHHHHHHHHHhccHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence            9999999999999985  35 2222    222334444445789999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhccCCCCCchHHHHHHHHHHHHHHHHHHHhhhhccccCcccccccCCCcchhhhHHHHHHhHHHH
Q 014600          174 VANLSLYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISWAYWFKKILYY  253 (422)
Q Consensus       174 ig~~l~~~~~~~l~~~~~~~g~~~~~~~~~~~~~i~~~i~~i~~~i~~~~~~E~~~~~~~~~~~~~~~~~~~~~~n~~f~  253 (422)
                      +|..+++.+..|++..++   .++...+|+..+.+++++++++.+++++.+||++.++  +++.+.++.++.++|||+++
T Consensus       157 iG~~~~~~~~~plv~~~g---~~~~~~g~~~~~~i~~ii~~i~~~i~~~~~kE~~~~~--~~~~~~~~~l~~~~~Nk~~~  231 (460)
T PRK11462        157 AGGMLSTVLMMPLVNLIG---GDNKPLGFQGGIAVLSVVAFMMLAFCFFTTKERVEAP--PTTTSMREDLRDIWQNDQWR  231 (460)
T ss_pred             HHHHHHHHHHHHHHHHhC---CCchhhhHHHHHHHHHHHHHHHHHHHHhcceeccCCC--ccCCCHHHHHHHHhCChHHH
Confidence            999998888888876653   2234568999999999999999999999999975432  23445788899999999998


Q ss_pred             HHHHHHHHHHH---HHHhhhHHHHHHhhhccCccchhHh--HH------HHHH-----------HHHH-------HHHHH
Q 014600          254 QVALVYMLTRL---VVNVSQAYLAFYVINDLRMGQSAKA--LV------PAII-----------YICS-------FIVSI  304 (422)
Q Consensus       254 ~~~~~~~~~~~---~~~~~~~y~~~y~~~~~~l~~~~~~--~i------P~~~-----------~~~~-------~~~~~  304 (422)
                      .++..+++...   ..++...|+++|+.++.+.......  .+      ++..           +..+       .+..+
T Consensus       232 ~l~~~~~~~~~~~~~~~~~~~y~~~y~~g~~~~~~~~l~~~~i~~iig~~l~~~l~~r~gkk~~~~~~~~~~~~~~~~~~  311 (460)
T PRK11462        232 IVGLLTIFNILAVCVRGGAMMYYVTWILGTPEVFVAFLTTYCVGNLIGSALAKPLTDWKCKVTIFWWTNALLAVISLAMF  311 (460)
T ss_pred             HHHHHHHHHHHHHHHHHhHhhhhhhhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHH
Confidence            77655554433   3456778999998766443222110  00      1100           0000       00000


Q ss_pred             HHH------------HH-----------------HhhhhhhhhcCccccccceehhhHHHHHHHHHHHHHHHHHhHhhCC
Q 014600          305 LLQ------------VT-----------------GISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQSMSP  355 (422)
Q Consensus       305 ~~~------------v~-----------------~~~~~~~~~g~r~~g~~~~~s~~~~~~K~~~a~~~~i~g~~l~~~G  355 (422)
                      +.+            +.                 ..+.+|+++|+|+||.  +++.++|.+|+|+++|+++.|.+|+..|
T Consensus       312 ~~~~~~~~~~~~~~~l~g~~~~~~~~l~~~m~ad~~d~~e~~tG~r~~g~--~~a~~~f~~Klg~alg~~i~g~iL~~~G  389 (460)
T PRK11462        312 FVPMQASITMFVFIFVIGVLHQLVTPIQWVMMSDTVDYGEWCNGKRLTGI--SFAGTLFVLKLGLAFGGALIGWMLAYGG  389 (460)
T ss_pred             HhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHhcCCCchHH--HHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            000            00                 1233688999999999  9999999999999999999999999999


Q ss_pred             CccCCCCcccccccccCCCccchHHHHHHHHHHhhHhHHHHHHHHHHH-HhccCCCcCchhhhhhhcC
Q 014600          356 TVLDNNSSITSLTVLDNNSLISTSYISVTRFGLGLIPAICSLVSVAVT-FTMKLHTPYSKPLVEPLLQ  422 (422)
Q Consensus       356 y~~~~~~~~~~~~~~~~~~~q~~~~~~~i~~~~~~~P~i~~l~~~~~~-~~y~l~~~~~~~i~~~l~~  422 (422)
                      |+++             ..+|+++++.+++.+++++|+++.+++++++ ++||+|||+|+|+++||.|
T Consensus       390 y~~~-------------~~~q~~~~~~~i~~~~~~~P~~~~~~~~~~~~~~y~l~~~~~~~i~~~l~~  444 (460)
T PRK11462        390 YDAA-------------EKAQNSATISIIIALFTIVPAICYLLSAIIAKRYYSLTTHNLKTVMEQLAQ  444 (460)
T ss_pred             CCCC-------------CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Confidence            9974             2569999999999999999999999999887 5789999999999999853

>PRK10429 melibiose:sodium symporter; Provisional

Probab=100.00  E-value=1e-51  Score=421.71  Aligned_cols=376  Identities=15%  Similarity=0.184  Sum_probs=294.8

Q ss_pred             CCCceeeeeeeccchhHHHHHHHHHHHHHHHHHHh-CCChhHHHHHHHHHHHHhhhhhhhhhhhhc----ccCCchhHHH
Q 014600           20 PVGRWSVLYYGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELID----RFGHFKIWHG   94 (422)
Q Consensus        20 ~l~~~~~~~y~~g~~~~~~~~~~~~~~l~~f~t~~-gls~~~~g~i~~i~~l~~ai~~p~~G~lsD----r~Grrrp~ll   94 (422)
                      |++.++|++||+||++.++.+.+..+|+++||||+ |++++.+|.++++++++|+++||++|+++|    ||||||||++
T Consensus         2 ~l~~~~~~~yg~g~~~~~~~~~~~~~~l~~yyt~v~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il   81 (473)
T PRK10429          2 SISMTTKLSYGFGAFGKDFAIGIVYMYLMYYYTDVVGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWIL   81 (473)
T ss_pred             CCchhHHHhhccchhHHhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHh
Confidence            67899999999999999999999999999999999 999999999999999999999999999999    6899999999


Q ss_pred             HHHHHHHHHHHHhhcCccCccccCCccchhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCccchhhHHHHHHHHHHH
Q 014600           95 AGSVLVAVSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMV  174 (422)
Q Consensus        95 ~g~i~~~i~~~~lf~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~al~~~~t~~~~eR~~l~~~~~~~~~i  174 (422)
                      ++.++.+++++++|.+  | ++    +..+.++++.+..++++++|+++++||.++.+|+++|++||++++++|..+.++
T Consensus        82 ~g~i~~~i~~~llf~~--p-~~----~~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~lt~~~~eR~~l~~~~~~~~~i  154 (473)
T PRK10429         82 IGTLANSVVLFLLFSA--H-LF----EGTAQYVFVCVTYILWGMTYTIMDIPFWSLVPTLTLDKREREQLVPYPRFFASL  154 (473)
T ss_pred             hhhHHHHHHHHHHHcC--C-CC----CccHHHHHHHHHHHHHHHHHHHHcchHHhhhHHhCCCHHHHHHHHHHHHHHHHH
Confidence            9999999998888852  4 21    122223344444457899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhccCCCCCchHHHHHHHHHHHHHHHHHHHhhhhccccCccccc----ccCCCcchhhhHHHHHHhH
Q 014600          175 ANLSLYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKM----GLRGNSHARISWAYWFKKI  250 (422)
Q Consensus       175 g~~l~~~~~~~l~~~~~~~g~~~~~~~~~~~~~i~~~i~~i~~~i~~~~~~E~~~~~----~~~~~~~~~~~~~~~~~n~  250 (422)
                      |+++++.+..|++..++   ..+...+|++.+.+.+++.+++.+++++.+||++.++    +++++.+.++.++.++|||
T Consensus       155 g~~~~~~~~~~~~~~~g---~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~n~  231 (473)
T PRK10429        155 AGFVTAGFTLPFVNYVG---GGDRGFGFQMFTLVLIAFFIVSTIITLRNVHEVYSSDNQVSAEGSHLTLKDIVALIYKND  231 (473)
T ss_pred             HHHHHHHHHHHHHHHhC---CCchhhhHHHHHHHHHHHHHHHHHHHHcCceecCCccccccccccCCCHHHHHHHHhcCH
Confidence            88887777777765543   1234568999999998998888889999999975321    1233456788888999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHhhhccCccchh---Hh--------HHHHHH-----------HH-------HHHH
Q 014600          251 LYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSA---KA--------LVPAII-----------YI-------CSFI  301 (422)
Q Consensus       251 ~f~~~~~~~~~~~~~~~~~~~y~~~y~~~~~~l~~~~---~~--------~iP~~~-----------~~-------~~~~  301 (422)
                      +++.+++..++.+...+....+.++|.....+.....   ..        ..|.+.           +.       ++.+
T Consensus       232 ~~~~ll~~~~~~~~~~~~~~~~~~y~~~y~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~~~~  311 (473)
T PRK10429        232 QLSCLLGMALAYNIASNIINGFAIYYFTYVIGDADLFPYYLSYAGAANLVTLILFPRLVKSLSRRILWAGASIFPVLSCG  311 (473)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhheeeEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHH
Confidence            9988877777766665555555554444333322111   00        111110           01       1111


Q ss_pred             HHHHH----H----------H-----------HH-------hhhhhhhhcCccccccceehhhHHHHHHHHHHHHHHHHH
Q 014600          302 VSILL----Q----------V-----------TG-------ISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQS  349 (422)
Q Consensus       302 ~~~~~----~----------v-----------~~-------~~~~~~~~g~r~~g~~~~~s~~~~~~K~~~a~~~~i~g~  349 (422)
                      ..+..    .          +           ..       .+.+|+++|+|+||.  ++|.+++.+|+|++++..+.|+
T Consensus       312 ~~~~~~~~~~~~~~~~~i~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~--~~s~~~~~~K~~~al~~~i~g~  389 (473)
T PRK10429        312 VLLLMGLAAPHNALLIVIAGILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCESI--AYSVQTMVVKGGSAFAAFFIGV  389 (473)
T ss_pred             HHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccchhH--HHHHHHHHHHHHHHHHHHHHHH
Confidence            11000    0          0           00       222578999999999  9999999999999999999999


Q ss_pred             hHhhCCCccCCCCcccccccccCCCccchHHHHHHHHHHhhHhHHHHHHHHHHH-HhccCCCcCchhhhhhhc
Q 014600          350 YQSMSPTVLDNNSSITSLTVLDNNSLISTSYISVTRFGLGLIPAICSLVSVAVT-FTMKLHTPYSKPLVEPLL  421 (422)
Q Consensus       350 ~l~~~Gy~~~~~~~~~~~~~~~~~~~q~~~~~~~i~~~~~~~P~i~~l~~~~~~-~~y~l~~~~~~~i~~~l~  421 (422)
                      +++..||+++              .+|+++++++++.++.++|+++.+++++++ ++||+|||+|+|++|||.
T Consensus       390 ~l~~~Gy~~~--------------~~q~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~y~l~~~~~~~i~~~l~  448 (473)
T PRK10429        390 VLGLIGYVPN--------------VEQSAQTLLGMQFIMIGLPTLFFMITLVLYFRYYRLNGDFLRRIQIHLL  448 (473)
T ss_pred             HHHHcCCCCC--------------CcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHheeCCHHHHHHHHHHHH
Confidence            9999999974              469999999999999999999999998876 699999999999999985

>PRK09669 putative symporter YagG; Provisional

Probab=100.00  E-value=1.5e-51  Score=417.48  Aligned_cols=379  Identities=17%  Similarity=0.188  Sum_probs=298.2

Q ss_pred             CCCCCceeeeeeeccchhHHHHHHHHHHHHHHHHHHh-CCChhHHHHHHHHHHHHhhhhhhhhhhhhcc----cCCchhH
Q 014600           18 TQPVGRWSVLYYGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDR----FGHFKIW   92 (422)
Q Consensus        18 ~~~l~~~~~~~y~~g~~~~~~~~~~~~~~l~~f~t~~-gls~~~~g~i~~i~~l~~ai~~p~~G~lsDr----~Grrrp~   92 (422)
                      ++|+++++|++||+||++.+..+.....|+++||+|+ |+|++.+|.++++.+++|+++||++|+++||    |||||||
T Consensus         3 ~~~l~~~~~~~yg~g~~~~~~~~~~~~~~l~~~~t~~~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~   82 (444)
T PRK09669          3 TSQLTTKDKIGYGLGDTACNLVWQTVMLFLAYFYTDVFGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPY   82 (444)
T ss_pred             CCcccHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchh
Confidence            3579999999999999999999999999999999998 9999999999999999999999999999995    9999999


Q ss_pred             HHHHHHHHHHHHHHhhcCccCccccCCccchhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCccchhhHHHHHHHHH
Q 014600           93 HGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFT  172 (422)
Q Consensus        93 ll~g~i~~~i~~~~lf~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~al~~~~t~~~~eR~~l~~~~~~~~  172 (422)
                      ++++.++.++++.++|+  .| +++    .....+++.+..++++++|++.++||.++.+|+++|++||++++++|..+.
T Consensus        83 il~~~~~~~i~~~l~f~--~p-~~~----~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~~t~~~~eR~~l~~~r~~~~  155 (444)
T PRK09669         83 LLWFAIPFGVVCLLTFY--TP-DFG----ATGKIIYACVTYILLSLVYTAINVPYCAMPGAITNDPRERHSLQSWRFALS  155 (444)
T ss_pred             HHHHHHHHHHHHHHHHh--CC-CCC----cchHHHHHHHHHHHHHHHHHhhcchHHHhHHHhcCCHHHHHHHHHHHHHHH
Confidence            99999999999888775  35 221    111223333334578889999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhccCCCCCchHHHHHHHHHHHHHHHHHHHhhhhccccCcccccccCCCcchhhhHHHHHHhHHH
Q 014600          173 MVANLSLYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISWAYWFKKILY  252 (422)
Q Consensus       173 ~ig~~l~~~~~~~l~~~~~~~g~~~~~~~~~~~~~i~~~i~~i~~~i~~~~~~E~~~~~~~~~~~~~~~~~~~~~~n~~f  252 (422)
                      ++|+.+++.+..|+...++   .++.+.+|+..+.+.+++++++.+++++.+||++.++ ++++.+.++++++++|||++
T Consensus       156 ~~G~~i~~~~~~pl~~~~~---~~~~~~g~~~~~~i~~ii~~v~~~~~~~~~~e~~~~~-~~~~~~~~~~~~~~~~n~~~  231 (444)
T PRK09669        156 FIGGLIVSVIALPLVDILG---KGDEQKGYFYAMMVMGLLGVVLFFCCFFMTKERYTPE-VDNSSSVWKDLKLLLGNSQW  231 (444)
T ss_pred             HHHHHHHHHHHHHHHHHhC---CCchhhhHHHHHHHHHHHHHHHHHHHhCCeEEecCCC-CcCCCCHHHHHHHHhCCchH
Confidence            9999998888888877653   1234578999999999998888888899999975433 23344567888999999999


Q ss_pred             HHHHHHHHHHHHHHH---hhhHHHHHHhhhccCccchhH--------hHHHHHH-----------HHHHHH-------HH
Q 014600          253 YQVALVYMLTRLVVN---VSQAYLAFYVINDLRMGQSAK--------ALVPAII-----------YICSFI-------VS  303 (422)
Q Consensus       253 ~~~~~~~~~~~~~~~---~~~~y~~~y~~~~~~l~~~~~--------~~iP~~~-----------~~~~~~-------~~  303 (422)
                      +.++..+++...+..   ....|+..|+.++.+......        ...|++.           +..+.+       ..
T Consensus       232 ~~l~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~  311 (444)
T PRK09669        232 RIMFIFNVVLLTAVVTRGGATLYYVNYVLLRPDLATLFLVTGMIAGLFGALLSERLLGKFDRVRAFKWTIVAFVILSALI  311 (444)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhheeeeeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHH
Confidence            887766666544443   444555555544322222111        0112110           010110       00


Q ss_pred             HHH---H---------HHH-----------------hhhhhhhhcCccccccceehhhHHHHHHHHHHHHHHHHHhHhhC
Q 014600          304 ILL---Q---------VTG-----------------ISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQSMS  354 (422)
Q Consensus       304 ~~~---~---------v~~-----------------~~~~~~~~g~r~~g~~~~~s~~~~~~K~~~a~~~~i~g~~l~~~  354 (422)
                      ++.   +         +.+                 .+.+|+++|+|+||.  ++|.+++++|+|+++|+.+.|.+++..
T Consensus       312 ~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~am~ad~~d~~e~~~G~r~~g~--~~s~~~~~~klg~alg~~i~g~ll~~~  389 (444)
T PRK09669        312 FFIPPSNVWLIFALNILFNFIQNLTTPLQWSMFSDVVDYEEKRSGRRLDGL--VFSTNLFAIKLGLAIGGAVVGWILAWV  389 (444)
T ss_pred             HHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcCcchH--HHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            000   0         000                 223688999999999  999999999999999999999999999


Q ss_pred             CCccCCCCcccccccccCCCccchHHHHHHHHHHhhHhHHHHHHHHHHHHhccCCCcCchhhhhhhcC
Q 014600          355 PTVLDNNSSITSLTVLDNNSLISTSYISVTRFGLGLIPAICSLVSVAVTFTMKLHTPYSKPLVEPLLQ  422 (422)
Q Consensus       355 Gy~~~~~~~~~~~~~~~~~~~q~~~~~~~i~~~~~~~P~i~~l~~~~~~~~y~l~~~~~~~i~~~l~~  422 (422)
                      ||+++             +++|+++++++++.+++++|+++.+++++++++||+|||+|+|+++||.+
T Consensus       390 Gy~~~-------------~~~q~~~~~~~i~~~~~~~p~~~~~~~~~~~~~y~l~~~~~~~i~~~l~~  444 (444)
T PRK09669        390 DYVGG-------------AAVQSASVLTTINLLFTVIPGVLFAGMAIILNFYKLNDARVEAIAQELVK  444 (444)
T ss_pred             CCCCC-------------CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHhC
Confidence            99875             25799999999999999999999999999999999999999999999864

>PF13347 MFS_2: MFS/sugar transport protein

Probab=100.00  E-value=7.2e-49  Score=395.94  Aligned_cols=363  Identities=25%  Similarity=0.339  Sum_probs=289.8

Q ss_pred             eeeeeeccchhHHHHHHHHHHHHHHHHHHh-CCChhHHHHHHHHHHHHhhhhhhhhhhhhc----ccCCchhHHHHHHHH
Q 014600           25 SVLYYGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELID----RFGHFKIWHGAGSVL   99 (422)
Q Consensus        25 ~~~~y~~g~~~~~~~~~~~~~~l~~f~t~~-gls~~~~g~i~~i~~l~~ai~~p~~G~lsD----r~Grrrp~ll~g~i~   99 (422)
                      ++++|++|+++.++.+.....|+++||+|+ |+++..+|.++.+++++|++.||++|+++|    ||||||||+++|+++
T Consensus         2 ~~~ay~~g~~~~~~~~~~~~~~~~~f~~~~~gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~   81 (428)
T PF13347_consen    2 KKLAYGIGDLGYNMIWSLLSSYLLYFYTDVLGLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAIL   81 (428)
T ss_pred             cEEEeeHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccccccceEeehhhHH
Confidence            567899999999999999999999999999 999999999999999999999999999999    799999999999999


Q ss_pred             HHHHHHHhhcCccCccccCCccchhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCccchhhHHHHHHHHHHHHHHHH
Q 014600          100 VAVSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSL  179 (422)
Q Consensus       100 ~~i~~~~lf~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~al~~~~t~~~~eR~~l~~~~~~~~~ig~~l~  179 (422)
                      .+++++++|.+ .|.++++..    ..+++.+..++++++|++.++||.++.+|+++|++||++++++|+.+..+|+++.
T Consensus        82 ~~~~~~llf~~-~p~~~~~~~----~~~~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~  156 (428)
T PF13347_consen   82 LALSFFLLFSP-PPAGLSFTA----KLVWLFVFYILFDIAYTFVQIPYNALIPELTPDPDERTRLSSWRMIFSMIGSLLA  156 (428)
T ss_pred             HHHHHHHhhcc-ccchhhhhh----HHHHHHHHHHHHHHhhhhccCchhhcCccccccHhhhhhHHHHHHHHHHHHHHHH
Confidence            99999999852 243332222    2233334445789999999999999999999999999999999999999999888


Q ss_pred             HHHHHHHHhhccCCCCCchHHHHHHHHHHHHHHHHHHHhhhhccccCccc-ccccCCCcchhhhHHHHHHhHHHHHHHHH
Q 014600          180 YAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRL-KMGLRGNSHARISWAYWFKKILYYQVALV  258 (422)
Q Consensus       180 ~~~~~~l~~~~~~~g~~~~~~~~~~~~~i~~~i~~i~~~i~~~~~~E~~~-~~~~~~~~~~~~~~~~~~~n~~f~~~~~~  258 (422)
                      +.+.++++..+++   ++...+|++.+.+.+++++++.+++++.+||++. +++++++.+.++.+++++|||+++++...
T Consensus       157 ~~~~~~l~~~~g~---~~~~~~~~~~~~v~~iv~~v~~~i~~~~~ke~~~~~~~~~~~~~~~~~~~~~~~nr~~~~l~~~  233 (428)
T PF13347_consen  157 SFLAPILVSWFGG---GDTSNGYRWMALVLAIVGLVFFLITFFFVKERSVEVTEQEKKISLRDSLRSLFRNRPFRILLLA  233 (428)
T ss_pred             HHHhhhhhhhhcc---CccchHHHHHHHHHHHHHHHHhhhhhheeeeccccccccccccccccchhhhcccchHHHHHHH
Confidence            8888777766542   2222489999999999999999999999999432 22334556788999999999999988888


Q ss_pred             HHHHHHHHH---hhhHHHHHHhhhccCccchhHh--------HHHHHH-----------H-------HHHHHH-HHHH--
Q 014600          259 YMLTRLVVN---VSQAYLAFYVINDLRMGQSAKA--------LVPAII-----------Y-------ICSFIV-SILL--  306 (422)
Q Consensus       259 ~~~~~~~~~---~~~~y~~~y~~~~~~l~~~~~~--------~iP~~~-----------~-------~~~~~~-~~~~--  306 (422)
                      +++.+.+..   ....|+..|+.++.+..+....        ..|++.           +       ..+.+. .++.  
T Consensus       234 ~~~~~~~~~~~~~~~~y~~~~vl~~~~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~  313 (428)
T PF13347_consen  234 FFLQWLAFALMNTFLPYYFTYVLGNEGLISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGFLLLFFLGPG  313 (428)
T ss_pred             HHHHHhhhhhhhhHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHHHHHHHHHHhh
Confidence            887666554   4455666666555543332211        122211           0       111111 1111  


Q ss_pred             H---------HHH-----------------hhhhhhhhcCccccccceehhhHHHHHHHHHHHHHHHHHhHhhCCCccCC
Q 014600          307 Q---------VTG-----------------ISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQSMSPTVLDN  360 (422)
Q Consensus       307 ~---------v~~-----------------~~~~~~~~g~r~~g~~~~~s~~~~~~K~~~a~~~~i~g~~l~~~Gy~~~~  360 (422)
                      +         +.+                 .+.+|+++|+|+||.  ++|++++.+|++++++..+.+.+|+..||+++ 
T Consensus       314 ~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~--~~s~~~~~~k~~~~la~~i~g~~l~~~Gy~~~-  390 (428)
T PF13347_consen  314 SPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGM--YFSVNSFFIKIGQGLAGAIVGLLLALVGYDAN-  390 (428)
T ss_pred             hHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHH--HHHhhhhhhHHHHHHHHHHHHHHHHHhCcCCC-
Confidence            1         001                 233789999999999  99999999999999999999999999999986 


Q ss_pred             CCcccccccccCCCccchHHHHHHHHHHhhHhHHHHHHHHHHHHhccCCC
Q 014600          361 NSSITSLTVLDNNSLISTSYISVTRFGLGLIPAICSLVSVAVTFTMKLHT  410 (422)
Q Consensus       361 ~~~~~~~~~~~~~~~q~~~~~~~i~~~~~~~P~i~~l~~~~~~~~y~l~~  410 (422)
                                  .+.|+++++.+++.++.++|+++.+++++++++||+||
T Consensus       391 ------------~~~q~~~~~~~i~~~~~~~p~~~~~~~~i~~~~y~l~~  428 (428)
T PF13347_consen  391 ------------AAVQSASALSGIRILFSIVPAIFLLLAIIFMRFYPLTR  428 (428)
T ss_pred             ------------cCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCC
Confidence                        35799999999999999999999999999999999997

>PRK09848 glucuronide transporter; Provisional

Probab=100.00  E-value=1.8e-45  Score=373.26  Aligned_cols=378  Identities=17%  Similarity=0.230  Sum_probs=287.7

Q ss_pred             CCCCCceeeeeeeccchhHHHHHHHHHHHHHHHHHHh-CCChhHHHHHHHHHHHHhhhhhhhhhhhhcc----cCCchhH
Q 014600           18 TQPVGRWSVLYYGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDR----FGHFKIW   92 (422)
Q Consensus        18 ~~~l~~~~~~~y~~g~~~~~~~~~~~~~~l~~f~t~~-gls~~~~g~i~~i~~l~~ai~~p~~G~lsDr----~Grrrp~   92 (422)
                      .+|+++++|++||+||+++++.+.+..+|+++|++|+ |+++.++|.++++.+++|++.||++|+++||    +||||||
T Consensus         2 ~~~~~~~~~~~yg~g~~~~~~~~~~~~~~l~~y~~~~~gl~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~   81 (448)
T PRK09848          2 NQQLSWRTIVGYSLGDVANNFAFAMGALFLLSYYTDVAGVGAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPF   81 (448)
T ss_pred             CCcccHHHHHhhccchHHhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHH
Confidence            4679999999999999999999999999999999998 9999999999999999999999999999996    6999999


Q ss_pred             HHHHHHHHHHHHHHhhcCccCccccCCccchhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCccchhhHHHHHHHHH
Q 014600           93 HGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFT  172 (422)
Q Consensus        93 ll~g~i~~~i~~~~lf~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~al~~~~t~~~~eR~~l~~~~~~~~  172 (422)
                      ++++.++..+...++|.  .|..+.+..    ..+++.....++++++++.++|+.++.+++++|++||++++++|..+.
T Consensus        82 ~~~~~~~~~~~~~~~~~--~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~r~~~~  155 (448)
T PRK09848         82 LLFGTAPLMIFSVLVFW--VPTDWSHSS----KVVYAYLTYMGLGLCYSLVNIPYGSLATAMTQQPQSRARLGAARGIAA  155 (448)
T ss_pred             HHHHHHHHHHHHHHHHh--CcCCCCcch----HHHHHHHHHHHHHHHHHHhcccHhhhhhhhcCCHHHHHHHHHHHHHHH
Confidence            99999988887777764  242222111    122223333468899999999999999999999999999999999887


Q ss_pred             HHHHHHHHHHHHHHHhhccCCCCCchHHHHHHHHHHHHHHHHHHHhhhhccccCcccccccCCCcchhhhHHHHHHhHHH
Q 014600          173 MVANLSLYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISWAYWFKKILY  252 (422)
Q Consensus       173 ~ig~~l~~~~~~~l~~~~~~~g~~~~~~~~~~~~~i~~~i~~i~~~i~~~~~~E~~~~~~~~~~~~~~~~~~~~~~n~~f  252 (422)
                      .++........+|++....  | ++...+|.....+.+++++++.++++..+||++.++  +++.+.++.+++++|||++
T Consensus       156 ~~~~~~~~~~~~p~i~~~~--g-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~e~~~~~--~~~~~~~~~~~~l~~n~~f  230 (448)
T PRK09848        156 SLTFVCLAFLIGPSIKNSS--P-EEMVSVYHFWTIVLAIAGMVLYFICFKSTRENVVRI--VAQPSLKISLQTLKRNRPL  230 (448)
T ss_pred             HHHHHHHHHHHHHHHHHhC--C-CchhhhHHHHHHHHHHHHHHHHHHHHcCcEeccCCC--ccCCCHHHHHHHHhCCchH
Confidence            7766555555556665331  1 122234544445666777777777788889875432  2234567778999999999


Q ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHhhhccCccchhHh--HH----------HHHH-----------HHHHHHH-------
Q 014600          253 YQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKA--LV----------PAII-----------YICSFIV-------  302 (422)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~~y~~~y~~~~~~l~~~~~~--~i----------P~~~-----------~~~~~~~-------  302 (422)
                      +...+..++...+......+.++|.++..+.++....  ..          |.+.           +..+.++       
T Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~  310 (448)
T PRK09848        231 FMLCIGALCVLISTFAVSASSLFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLL  310 (448)
T ss_pred             HHHHHHHHHHHHHHHHHhhhheeeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHH
Confidence            8877777776666666666677777776665443211  11          1100           0111111       


Q ss_pred             HHHH---H---------HHH-----------------hhhhhhhhcCccccccceehhhHHHHHHHHHHHHHHHHHhHhh
Q 014600          303 SILL---Q---------VTG-----------------ISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQSM  353 (422)
Q Consensus       303 ~~~~---~---------v~~-----------------~~~~~~~~g~r~~g~~~~~s~~~~~~K~~~a~~~~i~g~~l~~  353 (422)
                      ..+.   .         +.+                 .+.+|+++|+|+||.  ++|.+++.+|+|+++|..+.+.+++.
T Consensus       311 ~~~~~~~~~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~--~~~~~~~~~klg~aig~~i~g~~l~~  388 (448)
T PRK09848        311 FFWVSVWSLPVALVALAIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGL--TYSLFSFTRKCGQAIGGSIPAFILGL  388 (448)
T ss_pred             HHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhH--HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            0000   0         000                 122578999999999  99999999999999999999999999


Q ss_pred             CCCccCCCCcccccccccCCCccchHHHHHHHHHHhhHhHHHHHHHHHHHHhccCCCcCchhhhhhhcC
Q 014600          354 SPTVLDNNSSITSLTVLDNNSLISTSYISVTRFGLGLIPAICSLVSVAVTFTMKLHTPYSKPLVEPLLQ  422 (422)
Q Consensus       354 ~Gy~~~~~~~~~~~~~~~~~~~q~~~~~~~i~~~~~~~P~i~~l~~~~~~~~y~l~~~~~~~i~~~l~~  422 (422)
                      .||+++              ..|+++++++++..++++|+++.+++++++++||+|||+|+|+++||.+
T Consensus       389 ~G~~~~--------------~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~y~l~~~~~~~~~~~l~~  443 (448)
T PRK09848        389 SGYIAN--------------QVQTPEVIMGIRTSIALVPCGFMLLAFVIIWFYPLTDKKFKEIVVEIDN  443 (448)
T ss_pred             cCCCCC--------------CcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHeeCCHHHHHHHHHHHHH
Confidence            999974              3599999999999999999999999999999999999999999999863

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=100.00  E-value=7.4e-45  Score=366.97  Aligned_cols=371  Identities=19%  Similarity=0.255  Sum_probs=287.8

Q ss_pred             eeeeeccchhHHHHHHHHHHHHHHHHHHh-CCChhHHHHHHHHHHHHhhhhhhhhhhhhcc----cCCchhHHHHHHHHH
Q 014600           26 VLYYGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDR----FGHFKIWHGAGSVLV  100 (422)
Q Consensus        26 ~~~y~~g~~~~~~~~~~~~~~l~~f~t~~-gls~~~~g~i~~i~~l~~ai~~p~~G~lsDr----~Grrrp~ll~g~i~~  100 (422)
                      |++||+|+++.+..+.+..+|+++|++|. |++++++|+++++.+++|+++||++|+++||    +||||||++.+.++.
T Consensus         1 ~~~yg~g~~~~~~~~~~~~~~l~~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~   80 (437)
T TIGR00792         1 KLSYGFGDFGNNFIFAIVSTYLLFFYTDVLGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPF   80 (437)
T ss_pred             CeeeecchHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHH
Confidence            58999999999999999999999999998 9999999999999999999999999999996    899999999999999


Q ss_pred             HHHHHHhhcCccCccccCCccchhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCccchhhHHHHHHHHHHHHHHHHH
Q 014600          101 AVSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLY  180 (422)
Q Consensus       101 ~i~~~~lf~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~al~~~~t~~~~eR~~l~~~~~~~~~ig~~l~~  180 (422)
                      +++..++|+  .|     +.+......++.+..+++++++++.++|+.++.+|+++|++||+++.++|+.+..+|+++++
T Consensus        81 ~i~~~~~~~--~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~  153 (437)
T TIGR00792        81 SIVLVLLFT--TP-----DFSATGKLVYAYITYILLGLFYSFVNIPYWSLVPAITLDPRERESLSTFRRFGATLGGLLVA  153 (437)
T ss_pred             HHHHHHHHh--CC-----CCCcchHHHHHHHHHHHHHHHHHhhcccHhhCcccccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            998888774  24     11111122333444457899999999999999999999999999999999999999998888


Q ss_pred             HHHHHHHhhccCCCCCchHHHHHHHHHHHHHHHHHHHhhhhccccCccccccc--CCCcchhhhHHHHHHhHHHHHHHHH
Q 014600          181 AIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGL--RGNSHARISWAYWFKKILYYQVALV  258 (422)
Q Consensus       181 ~~~~~l~~~~~~~g~~~~~~~~~~~~~i~~~i~~i~~~i~~~~~~E~~~~~~~--~~~~~~~~~~~~~~~n~~f~~~~~~  258 (422)
                      .+..|+...++.   +++..+|++.+.+.+++++++.+++++.+||+++++++  +++.+.++.+++++|||+++..++.
T Consensus       154 ~~~~~l~~~~~~---~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  230 (437)
T TIGR00792       154 VIVLPLVSYFGG---GDDKFGWFMFALVLALIGVVSLIICFFGTKERYSEIPKNIEKKLSLKQIFKALFKNDQLLILCLA  230 (437)
T ss_pred             HHHHHHHHHhCC---CcccccHHHHHHHHHHHHHHHHHHHHcCCEecCCCCCcccccCCCHHHHHHHHhCCHHHHHHHHH
Confidence            887787765431   12356899999999999988888888899997633111  2334567788999999999887777


Q ss_pred             HHHHHHHHHhhhHHHHHHhhhccCccchh--Hh---------HHHHHH-----------HH-------HHHHHHHHH--H
Q 014600          259 YMLTRLVVNVSQAYLAFYVINDLRMGQSA--KA---------LVPAII-----------YI-------CSFIVSILL--Q  307 (422)
Q Consensus       259 ~~~~~~~~~~~~~y~~~y~~~~~~l~~~~--~~---------~iP~~~-----------~~-------~~~~~~~~~--~  307 (422)
                      +++.+.+.+....+.++|..+..+.....  ..         ..|.+.           +.       .+.+...+.  +
T Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~  310 (437)
T TIGR00792       231 YLFYNLAFNIKNGVQVYYFTYVLGDPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFFFAGSN  310 (437)
T ss_pred             HHHHHHHHHHHcchhheeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcchh
Confidence            77766666555545555554444321111  00         011100           01       111100000  0


Q ss_pred             ---------HH----------H-------hhhhhhhhcCccccccceehhhHHHHHHHHHHHHHHHHHhHhhCCCccCCC
Q 014600          308 ---------VT----------G-------ISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQSMSPTVLDNN  361 (422)
Q Consensus       308 ---------v~----------~-------~~~~~~~~g~r~~g~~~~~s~~~~~~K~~~a~~~~i~g~~l~~~Gy~~~~~  361 (422)
                               +.          .       .+.+|+++|+|++|.  ++|..++.+|+|++++..+.|++++..||+++  
T Consensus       311 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~--~~~~~~~~~~~g~~lg~~i~g~ll~~~G~~~~--  386 (437)
T TIGR00792       311 LPLILVLIILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEGL--VYSVRTFVRKLGQALAGFLVGLILGIIGYVAN--  386 (437)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchHH--HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcC--
Confidence                     00          0       122466789999999  99999999999999999999999999999864  


Q ss_pred             CcccccccccCCCccchHHHHHHHHHHhhHhHHHHHHHHHHHH-hccCCCcCchhhhhhhcC
Q 014600          362 SSITSLTVLDNNSLISTSYISVTRFGLGLIPAICSLVSVAVTF-TMKLHTPYSKPLVEPLLQ  422 (422)
Q Consensus       362 ~~~~~~~~~~~~~~q~~~~~~~i~~~~~~~P~i~~l~~~~~~~-~y~l~~~~~~~i~~~l~~  422 (422)
                                  ..|+++++++++..+.++|+++.++++++++ +||+|||+|+|+++||.+
T Consensus       387 ------------~~~~~~~~~~~~~~~~~~p~i~~~~~~~~~~~~y~l~~~~~~~i~~~l~~  436 (437)
T TIGR00792       387 ------------AAQSPITLNGIKILMFAVPALFLLLAAIIIGRFYKLTEKKHAEIVEELEQ  436 (437)
T ss_pred             ------------CcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHeeCcHHHHHHHHHHHhc
Confidence                        3589999999999999999999999999997 999999999999999864

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>KOG4830 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=99.93  E-value=3.7e-26  Score=204.42  Aligned_cols=282  Identities=44%  Similarity=0.752  Sum_probs=213.2

Q ss_pred             CCCCCCCceeeeeeeccchhHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHhhhhhhhhhhhhc---------cc
Q 014600           16 SFTQPVGRWSVLYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELID---------RF   86 (422)
Q Consensus        16 ~~~~~l~~~~~~~y~~g~~~~~~~~~~~~~~l~~f~t~~gls~~~~g~i~~i~~l~~ai~~p~~G~lsD---------r~   86 (422)
                      -..|+++++.++.||.|++.|++...++.+|++.|+|++|+++....+++.++.+.|++..|+.|..+|         |+
T Consensus         9 PstkPigr~svf~yGvGHmlNDitAScWFTYlllfltqiglsp~~~AmlML~GQVtda~st~ftGi~~d~nll~~~idr~   88 (412)
T KOG4830|consen    9 PSTKPIGRTSVFAYGVGHMLNDITASCWFTYLLLFLTQIGLSPSSRAMLMLIGQVTDAISTPFTGIFSDSNLLPACIDRI   88 (412)
T ss_pred             CCCCcccceeeeeechhHHHhhHHHHHHHHHHHHHHHHhcCCcchhHHHHHhhHHHHHHhcccccccccccccHHHhhhh
Confidence            357889999999999999999999999999999999999999999999999999999999999998777         89


Q ss_pred             CCchhHHHHHHHHHHHHHHHhhcCccCccccCCccchhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCccchhhHHH
Q 014600           87 GHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTS  166 (422)
Q Consensus        87 Grrrp~ll~g~i~~~i~~~~lf~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~al~~~~t~~~~eR~~l~~  166 (422)
                      |||+.|..+|.++..+++...|..         .+             ++...++..                |      
T Consensus        89 G~~~~wh~~gt~lVslSf~~ifg~---------a~-------------iF~~~~~~s----------------~------  124 (412)
T KOG4830|consen   89 GRRMSWHLIGTVLVSLSFPMIFGF---------AK-------------IFLCKSTTS----------------E------  124 (412)
T ss_pred             cceeeeeecccEEEEEechhhcCc---------ee-------------EEeeccHHH----------------H------
Confidence            999999999998888876554420         00             000000000                0      


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhccCCCCCchHHHHHHHHHHHHHHHHHHHhhhhccccCcccccccCCCcchhhhHHHH
Q 014600          167 CRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISWAYW  246 (422)
Q Consensus       167 ~~~~~~~ig~~l~~~~~~~l~~~~~~~g~~~~~~~~~~~~~i~~~i~~i~~~i~~~~~~E~~~~~~~~~~~~~~~~~~~~  246 (422)
                          ..++|-....   ...++........+....+||.++....+++....+.+.++||+...-+.++.+..+..|...
T Consensus       125 ----vanlglyaia---lvVFgv~~A~~ke~tea~~R~~~~~~v~lG~~~~~vF~~~TrEP~~~~~~~~s~~~Rm~W~~W  197 (412)
T KOG4830|consen  125 ----VANLGLYAIA---LVVFGVGWASVKESTEALIRLAGWLVVVLGITVAFVFYAFTREPTNSFSSDASELVRMHWTSW  197 (412)
T ss_pred             ----HHHhHHHHHH---hheeeeeeecccccHHHHHHHhhhheeeeceeEEEEEeecccCcccccCcchhhhhcccchhh
Confidence                0111111000   001110000001234556788877766677776777788899987543334444567778889


Q ss_pred             HHhHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhccCccchhHhHHHHHHHHHHHHHHHHHH-------------------
Q 014600          247 FKKILYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQ-------------------  307 (422)
Q Consensus       247 ~~n~~f~~~~~~~~~~~~~~~~~~~y~~~y~~~~~~l~~~~~~~iP~~~~~~~~~~~~~~~-------------------  307 (422)
                      |++-.|+.+.+.|++.....+..+.|+++|+.++.++..+..+.+|.+.++.++..+.+.+                   
T Consensus       198 F~~v~~YQiAllYmLsRL~iNiSQaYlaFfviddlqm~qsakAllP~v~Yl~SF~VS~v~~eipwngkrlKayYsaGgii  277 (412)
T KOG4830|consen  198 FGHVQFYQIALLYMLSRLYINISQAYLAFFVIDDLQMEQSAKALLPMVAYLSSFSVSMVNSEIPWNGKRLKAYYSAGGII  277 (412)
T ss_pred             hhhhHHHHHHHHHHHHHHHhhhhhhheeeEEeehhhHHHHHhhhhHHHHHHhhhhHHhhcccCCcCcceeeeeeecccHH
Confidence            9999999999999999999999999999999999999999889999988777666665543                   


Q ss_pred             ----------------------------------HHHhhhhhhhhcCccccccceehhhHHHHHHHHHHHHHHHH
Q 014600          308 ----------------------------------VTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQ  348 (422)
Q Consensus       308 ----------------------------------v~~~~~~~~~~g~r~~g~~~~~s~~~~~~K~~~a~~~~i~g  348 (422)
                                                        ++..+++++..+++.|+.+|++|..+|.+|++.+++-.++-
T Consensus       278 wifcga~ilLlpr~i~symyAisvfIGIAnAimlvtslsitavli~~~~~~~aFv~GamSF~DKlS~GiA~~lie  352 (412)
T KOG4830|consen  278 WIFCGAVILLLPRGIKSYMYAISVFIGIANAIMLVTSLSITAVLINKNTESGAFVYGAMSFFDKLSNGIAYQLIE  352 (412)
T ss_pred             HHHhhhheeecccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCceEEEehHHHHHhhcccHHHHHHH
Confidence                                              12356789999999999999999999999999999877763

>PRK10504 putative transporter; Provisional

Probab=99.92  E-value=6.6e-23  Score=209.22  Aligned_cols=352  Identities=14%  Similarity=0.071  Sum_probs=232.0

Q ss_pred             eeeeccchhHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHhhhhhhhhhhhhcccCCchhHHHHHHHHHHHHHHH
Q 014600           27 LYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSS  106 (422)
Q Consensus        27 ~~y~~g~~~~~~~~~~~~~~l~~f~t~~gls~~~~g~i~~i~~l~~ai~~p~~G~lsDr~Grrrp~ll~g~i~~~i~~~~  106 (422)
                      +.-..+.+..........+.+|.+..+.|.++.+.|++.+...+..++..|+.|+++||+||||.++ .+....+++..+
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~-~~~~~~~~~~~~   91 (471)
T PRK10504         13 WIVAFGFFMQSLDTTIVNTALPSMAQSLGESPLHMHMVIVSYVLTVAVMLPASGWLADRVGVRNIFF-TAIVLFTLGSLF   91 (471)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHH-HHHHHHHHHHHH
Confidence            4445556666666777778888888888999999999999999999999999999999999999854 566666655543


Q ss_pred             hhcCccCccccCCccchhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCccchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 014600          107 VFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIV  186 (422)
Q Consensus       107 lf~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~al~~~~t~~~~eR~~l~~~~~~~~~ig~~l~~~~~~~l  186 (422)
                      ...       .+  +.+    .+.+...+.+++.+.......++..+..+ +++|++..+.......+|..+++.+++.+
T Consensus        92 ~~~-------~~--~~~----~l~~~~~l~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~g~~~~g~l  157 (471)
T PRK10504         92 CAL-------SG--TLN----ELLLARVLQGVGGAMMVPVGRLTVMKIVP-REQYMAAMTFVTLPGQVGPLLGPALGGLL  157 (471)
T ss_pred             HHH-------hC--CHH----HHHHHHHHHHhhhHHHHHHHHHHHHHHcC-HHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence            221       11  111    12233456788888777777888888875 67889988888777788888777666555


Q ss_pred             HhhccCCCCCchHHHHHHHHHHHHHHHHHHHhhhhccccCccccccc---------------------CCC---------
Q 014600          187 FSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGL---------------------RGN---------  236 (422)
Q Consensus       187 ~~~~~~~g~~~~~~~~~~~~~i~~~i~~i~~~i~~~~~~E~~~~~~~---------------------~~~---------  236 (422)
                      .+          ..+|++.+.+..++..+..++.....+|.+.++.+                     +++         
T Consensus       158 ~~----------~~gw~~~f~~~~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (471)
T PRK10504        158 VE----------YASWHWIFLINIPVGIIGAIATLMLMPNYTMQTRRFDLSGFLLLAVGMATLTLALDGSKGLGLSPLAI  227 (471)
T ss_pred             Hh----------hccHHHHHHHHHHHHHHHHHHHHHhCCCccccCCCCChHHHHHHHHHHHHHHHHHhcCCcCCcchHHH
Confidence            43          23789888877666666555555444442211100                     000         


Q ss_pred             ---------------------cchhhhHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhccCccchhHh--HHH-
Q 014600          237 ---------------------SHARISWAYWFKKILYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKA--LVP-  292 (422)
Q Consensus       237 ---------------------~~~~~~~~~~~~n~~f~~~~~~~~~~~~~~~~~~~y~~~y~~~~~~l~~~~~~--~iP-  292 (422)
                                           .+...++ +++|||+++..+...++.+........+.|.|.++..+.++....  ..| 
T Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~  306 (471)
T PRK10504        228 AGLVAVGVVALLLYLLHARNNNRALFSL-KLFRTRTFSLGLAGSFAGRIGSGMLPFMTPVFLQIGLGFSPFHAGLMMIPM  306 (471)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCccCH-HHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence                                 0001122 478999998877777776666666666777777766666553321  111 


Q ss_pred             ---------HHH-----------HHHHHHHH--------HHH--H----------HHH----------hhhhhhhhcCcc
Q 014600          293 ---------AII-----------YICSFIVS--------ILL--Q----------VTG----------ISMQNVLVGEDL  322 (422)
Q Consensus       293 ---------~~~-----------~~~~~~~~--------~~~--~----------v~~----------~~~~~~~~g~r~  322 (422)
                               ...           ...+....        +..  .          +.+          ..+......+|.
T Consensus       307 ~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  386 (471)
T PRK10504        307 VLGSMGMKRIVVQVVNRFGYRRVLVATTLGLALVSLLFMLVALLGWYYLLPFVLFLQGMVNSTRFSSMNTLTLKDLPDNL  386 (471)
T ss_pred             HHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHh
Confidence                     100           01111000        000  0          001          011223456778


Q ss_pred             ccccceehhhHHHHHHHHHHHHHHHHHhHhhCCCccCCCCcccccccccCCCccchHHHHHHHHHHhhHh-HHHHHHHHH
Q 014600          323 SGCAFVCGTLSFLDKMSCGIAVYVLQSYQSMSPTVLDNNSSITSLTVLDNNSLISTSYISVTRFGLGLIP-AICSLVSVA  401 (422)
Q Consensus       323 ~g~~~~~s~~~~~~K~~~a~~~~i~g~~l~~~Gy~~~~~~~~~~~~~~~~~~~q~~~~~~~i~~~~~~~P-~i~~l~~~~  401 (422)
                      +|.  .+|..++.+|+|+++|..+.|.+++..||+..              ++|++  ...+.+.+.++| +++.+++++
T Consensus       387 ~g~--~~~~~~~~~~~g~~ig~~i~g~ll~~~g~~~~--------------~~~~~--~~~~~~~~~~~~~~~~~~~~~~  448 (471)
T PRK10504        387 ASS--GNSLLSMIMQLSMSIGVTIAGLLLGLFGQQHV--------------SVDSG--ATHTVFMYTYLCMALIIALPAL  448 (471)
T ss_pred             ccc--hHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc--------------ccccc--cchhHHHHHHHHHHHHHHHHHH
Confidence            998  99999999999999999999999999999642              22333  444445556667 778888888


Q ss_pred             HHHhccCCCcCchhhhhhhcC
Q 014600          402 VTFTMKLHTPYSKPLVEPLLQ  422 (422)
Q Consensus       402 ~~~~y~l~~~~~~~i~~~l~~  422 (422)
                      ++.+||++|++|+++++|+.+
T Consensus       449 ~~~~~~~~~~~~~~~~~~~~~  469 (471)
T PRK10504        449 IFARVPNDTHQNVAISRRKRS  469 (471)
T ss_pred             HHhcCCcchhhhhcccccccc
Confidence            888999999999999888753

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=99.89  E-value=3.2e-20  Score=188.31  Aligned_cols=350  Identities=12%  Similarity=0.088  Sum_probs=247.7

Q ss_pred             CceeeeeeeccchhHHHHH-HHHHHHHHHHHHHh----CCC--------------------------hhHHHHHHHHHHH
Q 014600           22 GRWSVLYYGSGHMLNDITA-ACWFTYLLLFLTDI----GLS--------------------------PRGAAAVMLSGQI   70 (422)
Q Consensus        22 ~~~~~~~y~~g~~~~~~~~-~~~~~~l~~f~t~~----gls--------------------------~~~~g~i~~i~~l   70 (422)
                      ++|+..+|.+.|++++... .+...|+|.|++++    |..                          .+..+...+++.+
T Consensus         2 tr~~i~~W~lyd~ans~f~~~i~t~~~p~~~~~~a~~~g~~~~~~~~~c~~~~~~c~~~~~g~~~~~~s~~~~~~sis~l   81 (477)
T PF11700_consen    2 TRREIWSWALYDWANSPFATVIVTFFFPPYFQSLAREAGVLPGDPTQPCSDSDDDCVVPFFGSWIDTSSLWLYANSISGL   81 (477)
T ss_pred             chhHHHHHHHhHhhcccchhhhHHHHHHHHHHHHHHhcccccccccCcccccCCccccccccccccHhHHHHHHHHHHHH
Confidence            4577899999999988643 45567889999885    211                          2456788999999


Q ss_pred             HhhhhhhhhhhhhcccCCchhHHHHHHHHHHHHHHHhhcCccCccccCCccchhhhHHHHHHHHHHHHHHHHHHhhhhhh
Q 014600           71 ADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSM  150 (422)
Q Consensus        71 ~~ai~~p~~G~lsDr~Grrrp~ll~g~i~~~i~~~~lf~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~al  150 (422)
                      +.++..|+.|.++|+.|+||+++.+.+....++..+++.  ++      .+.++...   ++.++-.++|...++.|+++
T Consensus        82 ~~all~P~lGa~aD~~~~Rk~~l~~~~~~~~~~~~~l~~--v~------~~~~~~~~---~l~iia~v~~~~~~vfyna~  150 (477)
T PF11700_consen   82 LQALLAPFLGAIADYGGRRKRFLLIFTLLGVLATALLWF--VS------PGQWWLAL---VLFIIANVGYEASNVFYNAY  150 (477)
T ss_pred             HHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHH--hC------cchHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999998888888877766653  11      12222211   11235678899999999999


Q ss_pred             hhhccCCccc-------------------------hhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchHHHHHHH
Q 014600          151 VNCITLNSTS-------------------------RVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYRWI  205 (422)
Q Consensus       151 ~~~~t~~~~e-------------------------R~~l~~~~~~~~~ig~~l~~~~~~~l~~~~~~~g~~~~~~~~~~~  205 (422)
                      +|++++++++                         |+++++.....+++|+++...+...++...+..  .+.....|..
T Consensus       151 LP~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l~~~~~~~~~--~~~~~~~r~~  228 (477)
T PF11700_consen  151 LPDLARPEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLISLLLVISPGST--ASNTWAIRVA  228 (477)
T ss_pred             hHhhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHcCCCc--cccchhhhHH
Confidence            9999986555                         399999999999999988877765554433211  1223567888


Q ss_pred             HHHHHHHHHHHHhhhhccccCcccccc-cCCC-------cchhhhHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHh
Q 014600          206 AYSSIFIGCCFVGIFLSRTEEPRLKMG-LRGN-------SHARISWAYWFKKILYYQVALVYMLTRLVVNVSQAYLAFYV  277 (422)
Q Consensus       206 ~~i~~~i~~i~~~i~~~~~~E~~~~~~-~~~~-------~~~~~~~~~~~~n~~f~~~~~~~~~~~~~~~~~~~y~~~y~  277 (422)
                      +.+.++..++..+..++++||++.+++ ++.+       ++..+.+|++.|+|+..++++.+++..-+.+++......|.
T Consensus       229 ~~~~a~ww~vfsiP~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~t~k~~~~~~~~~~fLia~~l~~dg~~ti~~~~~i~a  308 (477)
T PF11700_consen  229 FLIVALWWLVFSIPLFLWLPDRPGPRPLPSGSSYLRFGFKRLWRTFKEIRKLRQLFLFLIAYFLYSDGVNTIISFAGIYA  308 (477)
T ss_pred             HHHHHHHHHHHHHHHHHhCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            888888888989899999999875222 1111       12345567777788888888999998889999999999999


Q ss_pred             hhccCccchhHhHHHHHH--------------------------------HHHHHHHHHHH--------H----------
Q 014600          278 INDLRMGQSAKALVPAII--------------------------------YICSFIVSILL--------Q----------  307 (422)
Q Consensus       278 ~~~~~l~~~~~~~iP~~~--------------------------------~~~~~~~~~~~--------~----------  307 (422)
                      .+..+++......+-++.                                +..-.+..+++        +          
T Consensus       309 ~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~~~i~~~g~~G~~~~~~g~~~~~~f~~~a~  388 (477)
T PF11700_consen  309 TEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILWIIIPLYGLFGFWPSFFGLKSPWEFWVLAV  388 (477)
T ss_pred             HHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHhhhcccCcccHHHHHHHHH
Confidence            999999876532111100                                00000011110        0          


Q ss_pred             HH----------HhhhhhhhhcCccccccceehhhHHHHHHHHHHHHHHHHHhHhhCCCccCCCCcccccccccCCCccc
Q 014600          308 VT----------GISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQSMSPTVLDNNSSITSLTVLDNNSLIS  377 (422)
Q Consensus       308 v~----------~~~~~~~~~g~r~~g~~~~~s~~~~~~K~~~a~~~~i~g~~l~~~Gy~~~~~~~~~~~~~~~~~~~q~  377 (422)
                      +.          ..++.....-+.+|+.  +||.+.+..|.+.-+|+.+.|.+.+.+|-.                    
T Consensus       389 ~~G~~~G~~qs~sRs~~~~LiP~g~e~e--fFgly~i~gk~ss~lGPll~g~i~~~tg~~--------------------  446 (477)
T PF11700_consen  389 LIGLFMGGIQSASRSLFSRLIPPGREAE--FFGLYAITGKASSWLGPLLFGLITDATGSQ--------------------  446 (477)
T ss_pred             HHHHHhhhHHHHHHHHHHHhCCCchhhH--HHHHHHHHHHHHHHHHHHHHHHHHHHhCCc--------------------
Confidence            01          1334455666778898  999999999999999999999999888621                    


Q ss_pred             hHHHHHHHHHHhhHhHHHHHHHHHHHHhccCCCcCch
Q 014600          378 TSYISVTRFGLGLIPAICSLVSVAVTFTMKLHTPYSK  414 (422)
Q Consensus       378 ~~~~~~i~~~~~~~P~i~~l~~~~~~~~y~l~~~~~~  414 (422)
                             |..+.. -+++++++++++.+-+.+|.++|
T Consensus       447 -------r~g~~~-l~~lf~~gl~ll~~v~~~~g~~~  475 (477)
T PF11700_consen  447 -------RYGFLF-LLVLFLIGLILLFFVDVEKGRED  475 (477)
T ss_pred             -------hhHHHH-HHHHHHHHHHHHhhccchhhhhc
Confidence                   222322 25677788888877777776655

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=99.85  E-value=4.3e-18  Score=170.36  Aligned_cols=231  Identities=13%  Similarity=0.039  Sum_probs=160.5

Q ss_pred             hhHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHhhhhhhhhhhhhccc-----CCchhHHHHHHHHHHHHHHHhh
Q 014600           34 MLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRF-----GHFKIWHGAGSVLVAVSFSSVF  108 (422)
Q Consensus        34 ~~~~~~~~~~~~~l~~f~t~~gls~~~~g~i~~i~~l~~ai~~p~~G~lsDr~-----Grrrp~ll~g~i~~~i~~~~lf  108 (422)
                      +.+.+.......-+|.|+++.|+|..++|++..+...+  +..|++|+++||+     ||||+|++.+.++.+++...+.
T Consensus         9 ~~~~~~~~~~~~~~~~~l~~~g~~~~~ig~~~~~~~~~--~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~~~~l~   86 (402)
T PRK11902          9 FASGLPLALTSGTLQAWMTVEGLDIQTIGFFSLVGQAY--IFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAASIAAMA   86 (402)
T ss_pred             HHHhhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH--HHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHHHHHHH
Confidence            34566667777789999999999999999998888875  8899999999998     9999999998888887776655


Q ss_pred             cCccCccccCCccchhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014600          109 GGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFS  188 (422)
Q Consensus       109 ~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~al~~~~t~~~~eR~~l~~~~~~~~~ig~~l~~~~~~~l~~  188 (422)
                      .  .+    +. ...+.   ..+..++.+...+..+++..++.+|+.+ ++||++.++++..+..+|.++++.+...+.+
T Consensus        87 ~--~~----~~-~~~~~---l~~~~~~~~~~~~~~~~~~~al~~~~~~-~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~  155 (402)
T PRK11902         87 F--CP----PH-AALWP---LAGLAVLVAFLSASQDIVFDAYSTDVLH-PEERGAGAAVKVLGYRLAMLVSGGLALWLAD  155 (402)
T ss_pred             h--cC----cc-chHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhcC-hhhhhHHHHHHHHHHHHHHHHHhHHHHHHHh
Confidence            3  11    11 12221   1112234567788899999999999975 6789999999999888888888766655443


Q ss_pred             hccCCCCCchHHHHHHHHHHHHHHHHHHHhhhhccccCcccccccCC--CcchhhhHHHHHHhHHHHHHHHHHHHHHHHH
Q 014600          189 VSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRG--NSHARISWAYWFKKILYYQVALVYMLTRLVV  266 (422)
Q Consensus       189 ~~~~~g~~~~~~~~~~~~~i~~~i~~i~~~i~~~~~~E~~~~~~~~~--~~~~~~~~~~~~~n~~f~~~~~~~~~~~~~~  266 (422)
                      .         ..+|+..+.+.+++.++..+. .+..||++.++++++  +++.++.+++++|||.++..++..++.....
T Consensus       156 ~---------~~gw~~~f~i~a~~~l~~~l~-~~~~~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~l~~~~~  225 (402)
T PRK11902        156 R---------VLGWGNTYLLMAGLMLAGALT-TLWAPEPEVPARPPRSLGEAVVGPLRDFFSRRGAWALLLLIVLYKLGD  225 (402)
T ss_pred             c---------ccCHHHHHHHHHHHHHHHHHH-HHhcCCCcccccccchhHHHHHHHHHHHHhCcCHHHHHHHHHHHHhHH
Confidence            1         127888888877766655443 455677543321111  1234567888999999877665555544433


Q ss_pred             HhhhHHHHHHhhhccCccchh
Q 014600          267 NVSQAYLAFYVINDLRMGQSA  287 (422)
Q Consensus       267 ~~~~~y~~~y~~~~~~l~~~~  287 (422)
                      .....+.+.|+.++.++++..
T Consensus       226 ~~~~~~~~~~l~~~~G~~~~~  246 (402)
T PRK11902        226 AFAGSLSTTFLIRGAGFSAGE  246 (402)
T ss_pred             HHHHHHHHHHHHHhcCCCHHH
Confidence            333344555666666766543

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=99.85  E-value=1.4e-19  Score=182.79  Aligned_cols=256  Identities=16%  Similarity=0.088  Sum_probs=183.3

Q ss_pred             CceeeeeeeccchhHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHhhhhhhhhhhhhc----ccCCchhHHHHHH
Q 014600           22 GRWSVLYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELID----RFGHFKIWHGAGS   97 (422)
Q Consensus        22 ~~~~~~~y~~g~~~~~~~~~~~~~~l~~f~t~~gls~~~~g~i~~i~~l~~ai~~p~~G~lsD----r~Grrrp~ll~g~   97 (422)
                      +.++.+.-+...+|.++.+.+..+++++|+.+.|+++..++.++.++.+.+.+.+|++|+++|    |+|||||+++.+.
T Consensus         2 ~~~~li~~~~~~~Giq~~~~l~~~~l~~yl~~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~   81 (477)
T TIGR01301         2 PLRKLLRVASVAAGVQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGA   81 (477)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHH
Confidence            455667777778899999999999999988777999999999999999999999999999999    5999999998888


Q ss_pred             HHHHHHHHHhhcCccCc-c--cc---CCccchhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCccch-hhHHHHHHH
Q 014600           98 VLVAVSFSSVFGGCMPC-R--IL---STSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSR-VVLTSCRNA  170 (422)
Q Consensus        98 i~~~i~~~~lf~~~~p~-~--~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~al~~~~t~~~~eR-~~l~~~~~~  170 (422)
                      +..++++.++.+  .+. .  +.   +.....+..+.+++...+.+++.+..+.|+.++++|++++++|| ....++.+.
T Consensus        82 ~~~~~~l~ll~~--~~~~~~~~~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~  159 (477)
T TIGR01301        82 ALVAFAVILIGF--AADIGHLFGDNLDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSF  159 (477)
T ss_pred             HHHHHHHHHHHh--CchhhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHH
Confidence            888887766543  110 0  00   00111222223333334567888999999999999999876665 478899999


Q ss_pred             HHHHHHHHHHHHHHHH--HhhccCCCC---CchHHHHHHHHHHHHHHHHHHHhhhhccccCccccccc---------CCC
Q 014600          171 FTMVANLSLYAIAFIV--FSVSTAKTH---ADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGL---------RGN  236 (422)
Q Consensus       171 ~~~ig~~l~~~~~~~l--~~~~~~~g~---~~~~~~~~~~~~i~~~i~~i~~~i~~~~~~E~~~~~~~---------~~~  236 (422)
                      +.++|+++++.+++..  ...++..+.   +....++++.+++.+++.+++.++.++.+||++..+++         .++
T Consensus       160 ~~~lG~ilg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~~~~~~~~~~~~~~~~~~  239 (477)
T TIGR01301       160 FMAIGNVLGYAAGAYSGLYKIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKENPLIGSDDFINSEAAPPSK  239 (477)
T ss_pred             HHHHHHHHHHHHHHHHhHHHhcccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeeccCCCccccchhhhcccccc
Confidence            9999999998877543  111110000   01113788889998888999999999999997531110         111


Q ss_pred             cchhhhHHHHHHh-----HHHHHHHHHHHHHHHHHHhhhHHHHHHhhh
Q 014600          237 SHARISWAYWFKK-----ILYYQVALVYMLTRLVVNVSQAYLAFYVIN  279 (422)
Q Consensus       237 ~~~~~~~~~~~~n-----~~f~~~~~~~~~~~~~~~~~~~y~~~y~~~  279 (422)
                      .+....+++++++     |+.++++.+++++|++...+..|...|+-+
T Consensus       240 ~~~~~~~~~i~~~~~~mP~~m~~l~~vqffsW~a~f~~~~y~T~~vg~  287 (477)
T TIGR01301       240 HGEEAFFGELFGAFKYLPRPVWILLLVTCLNWIAWFPFILFDTDWMGR  287 (477)
T ss_pred             cchhhhHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHhccHHHHH
Confidence            1112223343333     346788999999999999999999999764

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.84  E-value=4e-18  Score=166.75  Aligned_cols=303  Identities=16%  Similarity=0.113  Sum_probs=193.7

Q ss_pred             ccchhHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHhhhhhhhhhhhhcccCCchhHHHHHHHHHHHHHHHhhcC
Q 014600           31 SGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGG  110 (422)
Q Consensus        31 ~g~~~~~~~~~~~~~~l~~f~t~~gls~~~~g~i~~i~~l~~ai~~p~~G~lsDr~Grrrp~ll~g~i~~~i~~~~lf~~  110 (422)
                      .+.+...+...+....++.|..|.+.++.++|++.++..+..++..|+.|+++||+||||.++ .+.+..+++..++.. 
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~-~~~~~~~~~~~~~~~-   83 (365)
T TIGR00900         6 AAQLISLIGTAITQVALPLYVLAGTGSASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVMI-GADLIRAVLVAVLPF-   83 (365)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHH-HHHHHHHHHHHHHHH-
Confidence            345556666667777788888888999999999999999999999999999999999999854 555555444433221 


Q ss_pred             ccCccccCCccchhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 014600          111 CMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVS  190 (422)
Q Consensus       111 ~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~al~~~~t~~~~eR~~l~~~~~~~~~ig~~l~~~~~~~l~~~~  190 (422)
                       .+  ..++.+.+    .+.+...+.+++.+....+..++.+|+.+ ++||++..++.+....+|.++++.+++.+.+  
T Consensus        84 -~~--~~~~~~~~----~~~~~~~l~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~--  153 (365)
T TIGR00900        84 -VA--LLGGLNIW----QVYVLAGILAIAQAFFTPAYQAMLPDLVP-EEQLTQANSLSQAVRSLFYIVGPGIGGLMYA--  153 (365)
T ss_pred             -HH--HcCCCcHH----HHHHHHHHHHHHHHHHHHHHHHHHHhcCC-HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH--
Confidence             01  01111222    12223346788888888999999999986 5799999999999999999888877766543  


Q ss_pred             cCCCCCchHHHHHHHHHHHHHHHHHHHhhhhc-cccCcccccccCCC----cchhhhHHHHHHhHHHHHHHHHHHHHHHH
Q 014600          191 TAKTHADLENQYRWIAYSSIFIGCCFVGIFLS-RTEEPRLKMGLRGN----SHARISWAYWFKKILYYQVALVYMLTRLV  265 (422)
Q Consensus       191 ~~~g~~~~~~~~~~~~~i~~~i~~i~~~i~~~-~~~E~~~~~~~~~~----~~~~~~~~~~~~n~~f~~~~~~~~~~~~~  265 (422)
                              ..+|++.+.+.++..++..++.+. ..||++.+++++.+    .+.++.++.++|||.++......++....
T Consensus       154 --------~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  225 (365)
T TIGR00900       154 --------TLGIKWAIWVDAVGFAISALLIVSVRIPELAASEIQALSNAVLRDTREGIKFVLKNPLLRTLLLLALLFNLV  225 (365)
T ss_pred             --------HhhHHHHHHHHHHHHHHHHHHHHhcccccCCCccccccchhHHHHHHhHHHHHHcCcHHHHHHHHHHHHHHH
Confidence                    247888777665555444333322 22332211111111    12345567788999887766666555555


Q ss_pred             HHhhh-HHHHHHhhhccCccchhHhHH------------HHH-----------HHHHHHH-------H-HHHH--H----
Q 014600          266 VNVSQ-AYLAFYVINDLRMGQSAKALV------------PAI-----------IYICSFI-------V-SILL--Q----  307 (422)
Q Consensus       266 ~~~~~-~y~~~y~~~~~~l~~~~~~~i------------P~~-----------~~~~~~~-------~-~~~~--~----  307 (422)
                      ..... .+.|.|..+..+.+......+            +..           ....+..       . ....  .    
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (365)
T TIGR00900       226 FAPAIVALFPYVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYFKRMALMTGAIFVIGLAILVVGLTPPNFPLFL  305 (365)
T ss_pred             HHHHHHHHhHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhhchhHHHHH
Confidence            54444 677888776566554332100            000           0000000       0 0000  0    


Q ss_pred             ----HHH----------hhhhhhhhcCccccccceehhhHHHHHHHHHHHHHHHHHhHhhCC
Q 014600          308 ----VTG----------ISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQSMSP  355 (422)
Q Consensus       308 ----v~~----------~~~~~~~~g~r~~g~~~~~s~~~~~~K~~~a~~~~i~g~~l~~~G  355 (422)
                          +.+          ..+..+...+++.|.  .+|..+...++++.+++.+.|.+.+..|
T Consensus       306 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~--~~~~~~~~~~~~~~~g~~~~g~l~~~~g  365 (365)
T TIGR00900       306 VLWFAIGVGYGPINVPQGTLLQRRVPAELLGR--VFGAQFSLSHAAWPLGLILAGPLADHLG  365 (365)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence                001          122345556777788  9999999999999999999999988765

>PRK03545 putative arabinose transporter; Provisional

Probab=99.84  E-value=7.1e-18  Score=167.99  Aligned_cols=212  Identities=8%  Similarity=-0.079  Sum_probs=147.4

Q ss_pred             HHHHHHHHHhCCChhHHHHHHHHHHHHhhhhhhhhhhhhcccCCchhHHHHHHHHHHHHHHHhhcCccCccccCCccchh
Q 014600           45 TYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKV  124 (422)
Q Consensus        45 ~~l~~f~t~~gls~~~~g~i~~i~~l~~ai~~p~~G~lsDr~Grrrp~ll~g~i~~~i~~~~lf~~~~p~~~~~~~~~~~  124 (422)
                      +.++.+.+|.|+++.++|++.+...+..++..++.|+++||+||||. +..+....+++......       .+  +.+ 
T Consensus        30 ~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~-~~~~~~~~~~~~~~~~~-------~~--~~~-   98 (390)
T PRK03545         30 GLLSDIAQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNVERRKL-LIGLFVLFIASHVLSAL-------AW--NFT-   98 (390)
T ss_pred             cchHHHHhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHH-HHHHHHHHHHHHHHHHH-------hc--cHH-
Confidence            44566556669999999999999999999999999999999999987 55677777766544331       11  122 


Q ss_pred             hhHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchHHHHHH
Q 014600          125 ETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYRW  204 (422)
Q Consensus       125 ~~~~~~~~~~l~~~~~~~~~~p~~al~~~~t~~~~eR~~l~~~~~~~~~ig~~l~~~~~~~l~~~~~~~g~~~~~~~~~~  204 (422)
                         .+.+.+.+.+++.+....+..++.+++++ ++||++..++...+..+|..+++.++..+.+          ..+|++
T Consensus        99 ---~l~~~r~~~G~~~~~~~~~~~~~i~~~~~-~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~----------~~gw~~  164 (390)
T PRK03545         99 ---VLLISRIGIAFAHAIFWSITASLAIRVAP-AGKKAQALSLLATGTALAMVLGLPLGRVIGQ----------YLGWRT  164 (390)
T ss_pred             ---HHHHHHHHHHHHHHHHHHHHHHHHHHhCC-hhhhhhHHHHHHHHHHHHHHHHhhHHHHHHH----------HhcHHH
Confidence               12223345677777777777888999886 6789999999988888888877766544332          348999


Q ss_pred             HHHHHHHHHHHHHhhhhccccCcccccccCCCcchhhhHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhccCcc
Q 014600          205 IAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISWAYWFKKILYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMG  284 (422)
Q Consensus       205 ~~~i~~~i~~i~~~i~~~~~~E~~~~~~~~~~~~~~~~~~~~~~n~~f~~~~~~~~~~~~~~~~~~~y~~~y~~~~~~l~  284 (422)
                      .+.+.++++++..+..+...||++.+    ++ +..++.++.+|||.++......++..........|.+.|+.+..+.+
T Consensus       165 ~f~~~~~~~~l~~~~~~~~~~~~~~~----~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s  239 (390)
T PRK03545        165 TFLAIGGGALITLLLLIKLLPLLPSE----HS-GSLKSLPLLFRRPALVSLYLLTVVVVTAHFTAYSYIEPFVQQVAGLS  239 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCCCCC----Cc-chHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            98888877777666555555654321    11 22345678899998876555544444444455678888887766665


Q ss_pred             ch
Q 014600          285 QS  286 (422)
Q Consensus       285 ~~  286 (422)
                      ..
T Consensus       240 ~~  241 (390)
T PRK03545        240 EN  241 (390)
T ss_pred             cc
Confidence            54

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=99.83  E-value=1.8e-18  Score=175.89  Aligned_cols=288  Identities=14%  Similarity=0.089  Sum_probs=176.8

Q ss_pred             HHHHHHHhCCChhHHHHHHHHHHHHhhhhhhhhhhhhcccCCchhHHHHHHHHHHHHHHHhhcCccCccccCCccchhhh
Q 014600           47 LLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVET  126 (422)
Q Consensus        47 l~~f~t~~gls~~~~g~i~~i~~l~~ai~~p~~G~lsDr~Grrrp~ll~g~i~~~i~~~~lf~~~~p~~~~~~~~~~~~~  126 (422)
                      ..+++.+.|+++.+.|++.++..+..++.+|+.|+++||+||||. ++.+.+..+++..++..  .+.   ...+..   
T Consensus        51 ~~p~l~~~g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~-l~~~~~~~~i~~~~~~~--~~~---~~~~~~---  121 (452)
T PRK11273         51 AMPYLVEQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVF-LPAGLILAAAVMLFMGF--VPW---ATSSIA---  121 (452)
T ss_pred             hhHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchh-HHHHHHHHHHHHHHHHh--hhc---ccccHH---
Confidence            334455459999999999999999999999999999999999987 55677777666544321  110   011111   


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhhhhhhccCCccchhhHHHHHHHHHHHHHHH-HHHHHHHHHhhccCCCCCchHHHHHHH
Q 014600          127 ISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLS-LYAIAFIVFSVSTAKTHADLENQYRWI  205 (422)
Q Consensus       127 ~~~~~~~~l~~~~~~~~~~p~~al~~~~t~~~~eR~~l~~~~~~~~~ig~~l-~~~~~~~l~~~~~~~g~~~~~~~~~~~  205 (422)
                       ...+...+.+++.+....+..+...++.+ +++|++..++.+.+..+|+.+ ++.....+.          ...+|++.
T Consensus       122 -~~~~~~~l~gi~~g~~~~~~~~~~~~~~~-~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~----------~~~gw~~~  189 (452)
T PRK11273        122 -VMFVLLFLCGWFQGMGWPPCGRTMVHWWS-QKERGGIVSVWNCAHNVGGGLPPLLFLLGMA----------WFNDWHAA  189 (452)
T ss_pred             -HHHHHHHHHHHHHhccchHHHHHHHHhCC-hHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH----------HhccHHHH
Confidence             11222235666666665666777788765 678999999887777777533 322211111          12378988


Q ss_pred             HHHHHHHHHHHHhhhhccccCccccc-----cc---------C----CCcchhhhH-HHHHHhHHHHHHHHHHHHHHHHH
Q 014600          206 AYSSIFIGCCFVGIFLSRTEEPRLKM-----GL---------R----GNSHARISW-AYWFKKILYYQVALVYMLTRLVV  266 (422)
Q Consensus       206 ~~i~~~i~~i~~~i~~~~~~E~~~~~-----~~---------~----~~~~~~~~~-~~~~~n~~f~~~~~~~~~~~~~~  266 (422)
                      +++.+++.++..++..+..||++.+.     ++         +    ++.+.++.+ +.++|||.++...+...+.....
T Consensus       190 f~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  269 (452)
T PRK11273        190 LYMPAFAAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKHEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLR  269 (452)
T ss_pred             HHHHHHHHHHHHHHHHHHccCCHhhcCCCChhhhhhccccccccccCCCccHHHHHHHHHHcChHHHHHHHHHHHHHHHH
Confidence            88887777776666667777754320     00         0    000112222 34678898887777666666666


Q ss_pred             HhhhHHHHHHhhhccCccchhHh---------HHHH-------------------HHH-----HHHHHHHHHHH------
Q 014600          267 NVSQAYLAFYVINDLRMGQSAKA---------LVPA-------------------IIY-----ICSFIVSILLQ------  307 (422)
Q Consensus       267 ~~~~~y~~~y~~~~~~l~~~~~~---------~iP~-------------------~~~-----~~~~~~~~~~~------  307 (422)
                      .....|+|.|+++..+++.....         .++.                   ...     .++.....+..      
T Consensus       270 ~~~~~~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  349 (452)
T PRK11273        270 YGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWLNPAGNPTV  349 (452)
T ss_pred             HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHHHHHhcccChHH
Confidence            67788999999987666543211         0000                   000     00000000000      


Q ss_pred             ------HHHh----------hhhhhhhcCccccccceehhhHHHHHHHHHH-HHHHHHHhHhhCCCc
Q 014600          308 ------VTGI----------SMQNVLVGEDLSGCAFVCGTLSFLDKMSCGI-AVYVLQSYQSMSPTV  357 (422)
Q Consensus       308 ------v~~~----------~~~~~~~g~r~~g~~~~~s~~~~~~K~~~a~-~~~i~g~~l~~~Gy~  357 (422)
                            ..+.          .+..+...++..|.  ..|..++...+|.++ ++.+.|.+.+..||.
T Consensus       350 ~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~--~~g~~~~~~~~g~~~~g~~v~g~l~~~~g~~  414 (452)
T PRK11273        350 DMACMIVIGFLIYGPVMLIGLHALELAPKKAAGT--AAGFTGLFGYLGGSVAASAIVGYTVDFFGWD  414 (452)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHcChhhhhh--HHHHHHHHHHHHHHHhhhhhHHHHHHHhcch
Confidence                  0010          01234556777888  899999888998776 688999999988864

>PRK11010 ampG muropeptide transporter; Validated

Probab=99.82  E-value=2.3e-17  Score=169.34  Aligned_cols=306  Identities=13%  Similarity=0.091  Sum_probs=200.1

Q ss_pred             eeeeeccchhHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHhhhhhhhhhhhhccc-----CCchhHHHHHHHHH
Q 014600           26 VLYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRF-----GHFKIWHGAGSVLV  100 (422)
Q Consensus        26 ~~~y~~g~~~~~~~~~~~~~~l~~f~t~~gls~~~~g~i~~i~~l~~ai~~p~~G~lsDr~-----Grrrp~ll~g~i~~  100 (422)
                      ......-.+...+........++.++++.|.+..++|....++..+  +..|++|.++||+     ||||+|++.+.++.
T Consensus        14 ~~~~~~l~~~~gl~~~~~~~~l~~~l~~~g~~~~~ig~~~~~~~~~--~~~~l~gpl~Dr~~~~~~Grrr~~ll~~~i~~   91 (491)
T PRK11010         14 SAILLILGFASGLPLALTSGTLQAWMTVENIDLKTIGFFSLVGQAY--VFKFLWSPLMDRYTPPFLGRRRGWLLATQLLL   91 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH--HHHHHHHHHHHcccccCCCCchHHHHHHHHHH
Confidence            3444455566677777777888999998899999999986666554  5789999999998     99999999988888


Q ss_pred             HHHHHHh-hcCccCccccCCccchhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCccchhhHHHHHHHHHHHHHHHH
Q 014600          101 AVSFSSV-FGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSL  179 (422)
Q Consensus       101 ~i~~~~l-f~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~al~~~~t~~~~eR~~l~~~~~~~~~ig~~l~  179 (422)
                      +++...+ +.  .|     ..+.++    .....++.+++.+..+++..++.+|+++ ++||++..+++..+..+|.+++
T Consensus        92 ~~~~~~~a~~--~~-----~~~l~~----l~~~~~l~~~~~a~~~i~~~a~~~~~~~-~~~rg~~~~i~~~g~~lG~llg  159 (491)
T PRK11010         92 LVAIAAMGFL--EP-----GTQLRW----LAALAVVIAFCSASQDIVFDAWKTDVLP-AEERGAGAAISVLGYRLAMLVS  159 (491)
T ss_pred             HHHHHHHHHc--CC-----cchHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhcC-hhhhHHHHHHHHHHHHHHHHHH
Confidence            7776554 32  12     122222    2222346777888999999999999986 6899999999999999998888


Q ss_pred             HHHHHHHHhhccCCCCCchHHHHHHHHHHHHHHHHHHHhhhhccccCcccccccCC--CcchhhhHHHHHHhHHHHHHHH
Q 014600          180 YAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRG--NSHARISWAYWFKKILYYQVAL  257 (422)
Q Consensus       180 ~~~~~~l~~~~~~~g~~~~~~~~~~~~~i~~~i~~i~~~i~~~~~~E~~~~~~~~~--~~~~~~~~~~~~~n~~f~~~~~  257 (422)
                      +.+...+.+.         ..||+..+++.++++++..+..+ ..||++.++++++  +.+..+.+++.++++..+....
T Consensus       160 ~~l~~~l~~~---------~~GWr~~f~i~a~l~ll~~l~~~-~~~e~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ll  229 (491)
T PRK11010        160 GGLALWLADR---------YLGWQGMYWLMAALLIPCIIATL-LAPEPTDTIPVPKTLEQAVVAPLRDFFGRNNAWLILL  229 (491)
T ss_pred             HHHHHHHHhc---------ccCHHHHHHHHHHHHHHHHHHHH-hcCCCccccccccchhhhHHHHHHHHHcCcCHHHHHH
Confidence            7665554431         13899999888877776655444 4688643211111  1112346777887776665544


Q ss_pred             HHHHHHHHHHhhhHHHHHHhhhccCccchhHhH----HHHHH---------------------HHHHHH--H---H-H--
Q 014600          258 VYMLTRLVVNVSQAYLAFYVINDLRMGQSAKAL----VPAII---------------------YICSFI--V---S-I--  304 (422)
Q Consensus       258 ~~~~~~~~~~~~~~y~~~y~~~~~~l~~~~~~~----iP~~~---------------------~~~~~~--~---~-~--  304 (422)
                      ..++..........+.+.|+.+..|++....+.    ...+.                     .+.+..  +   . .  
T Consensus       230 ~~~l~~~~~~~~~~~~~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l~~l~~~~l  309 (491)
T PRK11010        230 LIVLYKLGDAFAMSLTTTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLFRALMIFGILQGVSNAGYWLL  309 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence            444544555555667777877767776554211    11100                     000000  0   0 0  


Q ss_pred             -H-HH----------H----HH------hhhhhhhhcCccccccceehhhHHHHHHHHHHHHHHHHHhHhhCCCc
Q 014600          305 -L-LQ----------V----TG------ISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQSMSPTV  357 (422)
Q Consensus       305 -~-~~----------v----~~------~~~~~~~~g~r~~g~~~~~s~~~~~~K~~~a~~~~i~g~~l~~~Gy~  357 (422)
                       . .+          +    .+      ..+..+...++..|.  .++..+....+|..+++.+.|++.+..||+
T Consensus       310 ~~~~~~~~~l~~~~~l~~~~~g~~~~~~~a~~~~l~~~~~~~t--~~gl~~s~~~lg~~~~~~~~G~l~~~~G~~  382 (491)
T PRK11010        310 SITDKNLYSMGAAVFFENLCGGMGTAAFVALLMTLCNKSFSAT--QFALLSALSAVGRVYVGPVAGWFVEAHGWP  382 (491)
T ss_pred             HhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhChH
Confidence             0 00          0    01      112334556667777  888888888999888889999999988874

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.82  E-value=2.9e-17  Score=162.02  Aligned_cols=295  Identities=11%  Similarity=-0.017  Sum_probs=180.7

Q ss_pred             chhHHHHHHHHHHHHHHHHHHh-CCChhHHHHHHHHHHHHhhhhhhhhhhhhcccCCchhHHHHHHHHHHHHHHHhhcCc
Q 014600           33 HMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGC  111 (422)
Q Consensus        33 ~~~~~~~~~~~~~~l~~f~t~~-gls~~~~g~i~~i~~l~~ai~~p~~G~lsDr~Grrrp~ll~g~i~~~i~~~~lf~~~  111 (422)
                      .+...+......++++.|+.+. |.|+.++|++.++..+.+.+.+|+.|+++||+||||++++.+.+..+++..+...  
T Consensus         6 ~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~--   83 (375)
T TIGR00899         6 AFLTGIAGALQFPTLSLFLSEEVRARPAMIGLFYTGSAIVGIAVSQLLATRSDYQGDRKGLILFCCLLAALACLLFAW--   83 (375)
T ss_pred             HHHHHHHHHHHhhHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHh--
Confidence            3455666677788899998876 9999999999999999999999999999999999999776665555544433221  


Q ss_pred             cCccccCCccchhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCccchhhH--HHHHHHHHHHHHHHHHHHHHHHHhh
Q 014600          112 MPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVL--TSCRNAFTMVANLSLYAIAFIVFSV  189 (422)
Q Consensus       112 ~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~al~~~~t~~~~eR~~l--~~~~~~~~~ig~~l~~~~~~~l~~~  189 (422)
                           ++  +.+ .   +++...+.+.+.+.......++..|..+ +++|.+.  .+......++|..+++.+++.+.+ 
T Consensus        84 -----~~--~~~-~---l~~~~~~~g~~~~~~~p~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~-  150 (375)
T TIGR00899        84 -----NR--NYF-L---LLVLGVLLSSFASTANPQLFALAREHAD-RTGREAVMFSSVMRAQISLAWVIGPPLAFWLAL-  150 (375)
T ss_pred             -----cc--hHH-H---HHHHHHHHHhhhhhhHHHHHHHHHHHhh-hcchhhHHHHHHHHHHHhHHHHHhhhHHHHHHH-
Confidence                 11  121 1   1122234444445555556677777764 3445432  455556667777776655544432 


Q ss_pred             ccCCCCCchHHHHHHHHHHHHHHHHHHHhhhhccccCcccccccCCCcchhhhHHHHHHhHHHHHHHHHHHHHHHHHHhh
Q 014600          190 STAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISWAYWFKKILYYQVALVYMLTRLVVNVS  269 (422)
Q Consensus       190 ~~~~g~~~~~~~~~~~~~i~~~i~~i~~~i~~~~~~E~~~~~~~~~~~~~~~~~~~~~~n~~f~~~~~~~~~~~~~~~~~  269 (422)
                               ..+|++.+.+.+++.++..++.++..||++.+++++   +.+++.++.+|+|+++......++........
T Consensus       151 ---------~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  218 (375)
T TIGR00899       151 ---------GFGFTVMFLTAALAFVLCGVLVWLFLPSYPRGAPGA---LTRLEVRGLLASRDTRLLFVACTLMWGCNILY  218 (375)
T ss_pred             ---------hcccHHHHHHHHHHHHHHHHHHHHhCCCcccCcccc---cCcchhhhhhcCcchHHHHHHHHHHHHHHHHH
Confidence                     247898888888777777666666677754332211   11233456778888766554444444444455


Q ss_pred             hHHHHHHhhhccCccchhHh---------HHHHHH--------------HHHHHHHH-------HHHH----------HH
Q 014600          270 QAYLAFYVINDLRMGQSAKA---------LVPAII--------------YICSFIVS-------ILLQ----------VT  309 (422)
Q Consensus       270 ~~y~~~y~~~~~~l~~~~~~---------~iP~~~--------------~~~~~~~~-------~~~~----------v~  309 (422)
                      ..++|.|+.+..+.+....+         .++...              ...+.+..       ...+          +.
T Consensus       219 ~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (375)
T TIGR00899       219 IINMPLLIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGLAADNSLWALLMLQLLN  298 (375)
T ss_pred             HhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            66788888777776654321         011000              00010000       0000          00


Q ss_pred             H----------hhhhhhhhcCccccccceehhhHHHHHHHHHHHHHHHHHhHhhCCCc
Q 014600          310 G----------ISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQSMSPTV  357 (422)
Q Consensus       310 ~----------~~~~~~~~g~r~~g~~~~~s~~~~~~K~~~a~~~~i~g~~l~~~Gy~  357 (422)
                      +          .....+...++ .+.  ..+..+...++|..+++.+.|.+.+..||+
T Consensus       299 g~~~g~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~g~~~g~~~~g~~~~~~g~~  353 (375)
T TIGR00899       299 AIFIGILAGIGMLYFQDLMPGR-AGA--ATTLYTNTGRVGWIIAGSVGGILAERWSYH  353 (375)
T ss_pred             HHHHHHHHHHHHHHHHHhCcch-hhH--HHHHHHHHHHHHHHHHHHHHHHHHHhccch
Confidence            1          11122333443 346  789999999999999999999999887764

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=99.82  E-value=2e-17  Score=165.51  Aligned_cols=304  Identities=11%  Similarity=0.053  Sum_probs=199.3

Q ss_pred             CCCCCceeeeeeeccchhHHHHHHHHHHHHHHHHHHh-CCChhHHHHHHHHHHHHhhhhhhhhhhhhcccCCchhHHHHH
Q 014600           18 TQPVGRWSVLYYGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAG   96 (422)
Q Consensus        18 ~~~l~~~~~~~y~~g~~~~~~~~~~~~~~l~~f~t~~-gls~~~~g~i~~i~~l~~ai~~p~~G~lsDr~Grrrp~ll~g   96 (422)
                      .+|+++  ++.+ ...+..........++++.|+++. |.|+.++|++.++..+.+.+.+|+.|+++||+||||. +..+
T Consensus         7 ~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~-l~~~   82 (400)
T PRK11646          7 ARNLGK--YFLL-IDNMLVVLGFFVVFPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPM-IVTG   82 (400)
T ss_pred             cccccH--HHHH-HHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHH-HHHH
Confidence            555554  3333 445556666677788999999887 9999999999999999999999999999999999877 5677


Q ss_pred             HHHHHHHHHHhhcCccCccccCCccchhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCccchhhHHHHHHHHHHHHH
Q 014600           97 SVLVAVSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVAN  176 (422)
Q Consensus        97 ~i~~~i~~~~lf~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~al~~~~t~~~~eR~~l~~~~~~~~~ig~  176 (422)
                      ....+++...+..       .+  +.+ .   ..+..++.+++.+....+..+++.+..+ +|+|++..++......+|.
T Consensus        83 ~~~~~~~~~~~~~-------~~--~~~-~---l~~~~~l~g~~~~~~~~~~~~~~~~~~~-~~~~~~a~~~~~~~~~~g~  148 (400)
T PRK11646         83 MLMRAAGFATMAI-------AH--EPW-L---LWLSCILSGLGGTLFDPPRTALVIKLIR-PHQRGRFFSLLMMQDSAGA  148 (400)
T ss_pred             HHHHHHHHHHHHH-------hc--cHH-H---HHHHHHHHHHHHHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHHHHHHH
Confidence            7777777655432       11  122 1   1223346777777778888899999876 6889999999999999999


Q ss_pred             HHHHHHHHHHHhhccCCCCCchHHHHHHHHHHHHHHHHHHHhhhhccccCcccccccCCCcchhhhHHHHHHhHHHHHHH
Q 014600          177 LSLYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISWAYWFKKILYYQVA  256 (422)
Q Consensus       177 ~l~~~~~~~l~~~~~~~g~~~~~~~~~~~~~i~~~i~~i~~~i~~~~~~E~~~~~~~~~~~~~~~~~~~~~~n~~f~~~~  256 (422)
                      .+++.+++.+..           .+|++.+++.+++.++..++..+..||++.+   +++.+.++.+++++|||+++...
T Consensus       149 ~ig~~l~g~l~~-----------~g~~~~f~~~~~~~~~~~i~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~  214 (400)
T PRK11646        149 VIGALLGSWLLQ-----------YDFRLVCATGAVLFVLAAAFNAWLLPAYKLS---TVRTPVREGMTRVLRDKRFVTYV  214 (400)
T ss_pred             HHHHHHHHHHHH-----------hhHHHHHHHHHHHHHHHHHHHHHhCCccccc---ccchhhHHHHHHHHcCchHHHHH
Confidence            888777655541           3788888777666665555544555553221   11223456678889999987654


Q ss_pred             HHHHHHHHHHHhhhHHHHHHhhhccCccchhH--------h----HHHHH-----------HHHHHHHHH---H--H--H
Q 014600          257 LVYMLTRLVVNVSQAYLAFYVINDLRMGQSAK--------A----LVPAI-----------IYICSFIVS---I--L--L  306 (422)
Q Consensus       257 ~~~~~~~~~~~~~~~y~~~y~~~~~~l~~~~~--------~----~iP~~-----------~~~~~~~~~---~--~--~  306 (422)
                      +..+...........++|.|..+..+.+....        .    ..|..           ....+.+..   .  +  .
T Consensus       215 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~~  294 (400)
T PRK11646        215 LTLTGYYMLAVQVMLMLPIMVNDIAGSPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSMFPIGMV  294 (400)
T ss_pred             HHHHHHHHHHHHHHHhhhhhHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHh
Confidence            44333333333345678888877644322110        0    00000           001111000   0  0  0


Q ss_pred             H----------HHH----------hhhhhhhhcCccccccceehhhHHHHHHHHHHHHHHHHHhHhhCC
Q 014600          307 Q----------VTG----------ISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQSMSP  355 (422)
Q Consensus       307 ~----------v~~----------~~~~~~~~g~r~~g~~~~~s~~~~~~K~~~a~~~~i~g~~l~~~G  355 (422)
                      +          +.+          ..+..+...++..|.  .+|..++...+|+.+|+.+.|++.+..|
T Consensus       295 ~~~~~~~~~~~l~~~g~~~~~p~~~~~~~~~~p~~~~g~--~~g~~~~~~~~g~~ig~~l~G~l~~~~~  361 (400)
T PRK11646        295 SNLQQLFTLICLFYIGSIIAEPARETLSASLADARARGS--YMGFSRLGLALGGAIGYIGGGWLFDLGK  361 (400)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHccHHHHHHhcCCcccchh--hhhHHHHHHHHHHHhcccchHHHHHHHh
Confidence            0          001          111334557788888  9999999999999999999999998754

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=99.82  E-value=7.8e-17  Score=160.50  Aligned_cols=222  Identities=12%  Similarity=0.084  Sum_probs=152.7

Q ss_pred             HHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHhhhhhhhhhhhhcccCCchhHHHHHHHHHHHHHHHhhcCccCccccC
Q 014600           39 TAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILS  118 (422)
Q Consensus        39 ~~~~~~~~l~~f~t~~gls~~~~g~i~~i~~l~~ai~~p~~G~lsDr~Grrrp~ll~g~i~~~i~~~~lf~~~~p~~~~~  118 (422)
                      ........+|.+..+.|.+..+.|++.++..+...+..|+.|+++||+||||. ++.+.++.+++..++..       .+
T Consensus        18 ~~~~~~~~lp~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~-l~~~~~~~~i~~~~~~~-------~~   89 (392)
T PRK10473         18 GIDMYLVGLPRIAADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPV-AIPGAALFIIASLLCSL-------AE   89 (392)
T ss_pred             HHHHHhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHH-HHHHHHHHHHHHHHHHH-------hC
Confidence            33444456677666679999999999999999999999999999999999776 66777777777665442       11


Q ss_pred             CccchhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCch
Q 014600          119 TSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADL  198 (422)
Q Consensus       119 ~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~al~~~~t~~~~eR~~l~~~~~~~~~ig~~l~~~~~~~l~~~~~~~g~~~~  198 (422)
                        +.+.    ..+...+.+++.+....+..++.+|..+ ++||++..++.+....+|..+++.++..+.+          
T Consensus        90 --~~~~----~~~~~~l~g~~~~~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~----------  152 (392)
T PRK10473         90 --TSSL----FLAGRFLQGIGAGCCYVVAFAILRDTLD-DRRRAKVLSLLNGITCIIPVLAPVLGHLIML----------  152 (392)
T ss_pred             --cHHH----HHHHHHHHHhhhhHHHHHHHHHHHHHcC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------
Confidence              1121    1222345677777777778888999875 6899999999988888887777666544332          


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhccccCcccccccCCCcchhhhHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHhh
Q 014600          199 ENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISWAYWFKKILYYQVALVYMLTRLVVNVSQAYLAFYVI  278 (422)
Q Consensus       199 ~~~~~~~~~i~~~i~~i~~~i~~~~~~E~~~~~~~~~~~~~~~~~~~~~~n~~f~~~~~~~~~~~~~~~~~~~y~~~y~~  278 (422)
                      ..+|++.+.+.+++.++..+++++..||++.+++ +++.+..+..++.+|||+++.......+..........+.|.|..
T Consensus       153 ~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (392)
T PRK10473        153 KFPWQSLFYTMAAMGILVLLLSLFILKETRPARA-PAASSKPRENSESLLNRFFLSRLVITTLSVTVILTFVNTSPVLLM  231 (392)
T ss_pred             CcChHHHHHHHHHHHHHHHHHHHHHcCCCCCccc-CCccchHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCHHHHH
Confidence            2378888888877777777777777788653322 222233444567889998776554444443444445556677777


Q ss_pred             hccCccch
Q 014600          279 NDLRMGQS  286 (422)
Q Consensus       279 ~~~~l~~~  286 (422)
                      ++.+++..
T Consensus       232 ~~~g~~~~  239 (392)
T PRK10473        232 EQMGFSRG  239 (392)
T ss_pred             HHcCCCHH
Confidence            77776654

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.82  E-value=1.8e-17  Score=165.62  Aligned_cols=299  Identities=11%  Similarity=0.049  Sum_probs=184.3

Q ss_pred             eccchhHHHHHHHHHHHHHHHHHHhCCChhH-----HHHHHHHHHHHhhhhhhhhhhhhcccCCchhHHHHHHHHHHHHH
Q 014600           30 GSGHMLNDITAACWFTYLLLFLTDIGLSPRG-----AAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSF  104 (422)
Q Consensus        30 ~~g~~~~~~~~~~~~~~l~~f~t~~gls~~~-----~g~i~~i~~l~~ai~~p~~G~lsDr~Grrrp~ll~g~i~~~i~~  104 (422)
                      -++.+..........++++.|+++.|++..+     +|.+.++..+.+++.+|+.|+++||+||||. ++.+.+..+++.
T Consensus        20 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~-~~~~~~~~~~~~   98 (408)
T PRK09874         20 WLGCFLTGAAFSLVMPFLPLYVEQLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRKGRKIM-LLRSALGMGIVM   98 (408)
T ss_pred             HHHHHHHHHHHHHhhhhHHHHHHHhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCcHHH-HHHHHHHHHHHH
Confidence            3566777778788888999999888887543     5999999999999999999999999999887 456677666665


Q ss_pred             HHhhcCccCccccCCccchhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCccchhhHHHHHHHHHHHHHHHHHHHHH
Q 014600          105 SSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAF  184 (422)
Q Consensus       105 ~~lf~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~al~~~~t~~~~eR~~l~~~~~~~~~ig~~l~~~~~~  184 (422)
                      .++..       .  .+.+ .   +.+...+.+++.+. ..+..++..+..+ ++||++..+.......+|..+++.+.+
T Consensus        99 ~~~~~-------~--~~~~-~---~~~~~~~~g~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~  163 (408)
T PRK09874         99 VLMGL-------A--QNIW-Q---FLILRALLGLLGGF-VPNANALIATQVP-RNKSGWALGTLSTGGVSGALLGPLAGG  163 (408)
T ss_pred             HHHHH-------H--hhHH-H---HHHHHHHHHHhhhh-HHhHHHHHHHhcC-HhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            54331       1  1122 1   12222345554433 3445667777764 678999999888888888877776655


Q ss_pred             HHHhhccCCCCCchHHHHHHHHHHHHHHHHHHHhhhhccccCcccccccCCCcchhhhHHHHHHhHHHHH-HHHHHHHHH
Q 014600          185 IVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISWAYWFKKILYYQ-VALVYMLTR  263 (422)
Q Consensus       185 ~l~~~~~~~g~~~~~~~~~~~~~i~~~i~~i~~~i~~~~~~E~~~~~~~~~~~~~~~~~~~~~~n~~f~~-~~~~~~~~~  263 (422)
                      .+.+          ..+|++.+.+.+++.++..++.++..||++.+++++++.+.++ ..+.+|||+++. +....++..
T Consensus       164 ~l~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  232 (408)
T PRK09874        164 LLAD----------SYGLRPVFFITASVLFLCFLVTLFCIRENFQPVSKKEMLHMRE-VVTSLKNPKLVLSLFVTTLIIQ  232 (408)
T ss_pred             HHHH----------HhCHHHHHHHHHHHHHHHHHHHHHHhccCcccccchhhhHHHH-HHHhCcCCchHHHHHHHHHHHH
Confidence            4433          2368888877777777666666677777543222121222222 334567777654 333333344


Q ss_pred             HHHHhhhHHHHHHhhhccCccchh---H---hHH---------HHHH-----------HHHHHHHHH-------HHH---
Q 014600          264 LVVNVSQAYLAFYVINDLRMGQSA---K---ALV---------PAII-----------YICSFIVSI-------LLQ---  307 (422)
Q Consensus       264 ~~~~~~~~y~~~y~~~~~~l~~~~---~---~~i---------P~~~-----------~~~~~~~~~-------~~~---  307 (422)
                      ........+++.|..+..+.....   .   ..+         |..-           ...+.....       ..+   
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~  312 (408)
T PRK09874        233 VATGSIAPILTLYVRELAGNVSNIAFISGMIASVPGVAALLSAPRLGKLGDRIGPEKILITALIFSVLLLIPMSFVQTPL  312 (408)
T ss_pred             HHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHhccHH
Confidence            445556677787877643322110   0   001         1000           001110000       000   


Q ss_pred             -------HHH-------h---hhhhhhhcCccccccceehhhHHHHHHHHHHHHHHHHHhHhhCCCc
Q 014600          308 -------VTG-------I---SMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQSMSPTV  357 (422)
Q Consensus       308 -------v~~-------~---~~~~~~~g~r~~g~~~~~s~~~~~~K~~~a~~~~i~g~~l~~~Gy~  357 (422)
                             +.+       +   .+..+..++++.|.  .++.++..+++|+++|+.+.|.+.+..||.
T Consensus       313 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~--~~~~~~~~~~~g~~~gp~~~G~l~~~~g~~  377 (408)
T PRK09874        313 QLGILRFLLGAADGALLPAVQTLLVYNSSNQIAGR--IFSYNQSFRDIGNVTGPLMGAAISANYGFR  377 (408)
T ss_pred             HHHHHHHHHHhhhHhhHHHHHHHHHHhCCccccee--eehHHHHHHHHHHHhhHHHHHHHHhhcchh
Confidence                   001       1   12234556677788  999999999999999999999998777764

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.81  E-value=2.3e-17  Score=162.62  Aligned_cols=283  Identities=13%  Similarity=0.091  Sum_probs=191.6

Q ss_pred             HHHHHHHHhCCChhHHHHHHHHHHHHhhhhhhhhhhhhcccCCchhHHHHHHHHHHHHHHHhhcCccCccccCCccchhh
Q 014600           46 YLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVE  125 (422)
Q Consensus        46 ~l~~f~t~~gls~~~~g~i~~i~~l~~ai~~p~~G~lsDr~Grrrp~ll~g~i~~~i~~~~lf~~~~p~~~~~~~~~~~~  125 (422)
                      ..+.+..+.|+++.++|++.++..+...+..|+.|+++||+||||. +..+.+..+++..++..       .+  +.+  
T Consensus        16 ~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~-~~~~~~~~~~~~~~~~~-------~~--~~~--   83 (399)
T TIGR00893        16 AAPMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKT-LAVFIVIWGVFTGLQAF-------AG--AYV--   83 (399)
T ss_pred             hHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhcCccee-eHHHHHHHHHHHHHHHH-------Hc--CHH--
Confidence            3344334449999999999999999999999999999999999988 45666666666544331       11  111  


Q ss_pred             hHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchHHHHHHH
Q 014600          126 TISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYRWI  205 (422)
Q Consensus       126 ~~~~~~~~~l~~~~~~~~~~p~~al~~~~t~~~~eR~~l~~~~~~~~~ig~~l~~~~~~~l~~~~~~~g~~~~~~~~~~~  205 (422)
                        .+.+..++.+++.+....+..++..|..+ ++||++..++......+|.++++.+...+.+          ..+|++.
T Consensus        84 --~~~~~~~l~g~~~~~~~~~~~~~~~~~~~-~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~----------~~~~~~~  150 (399)
T TIGR00893        84 --SLYILRVLLGAAEAPFFPGIILIVASWFP-ASERATAVSIFNSAQGLGGIIGGPLVGWILI----------HFSWQWA  150 (399)
T ss_pred             --HHHHHHHHHHHHHHhhhhHHHHHHHHhCC-HHHHHHHHHHHHHhchHHHHHHHHHHHHHHH----------hCCchHH
Confidence              22333457888888888888999999986 6899999999999999998888766654443          2368888


Q ss_pred             HHHHHHHHHHHHhhhhccccCcccccc-----cC---------------CCcchhhhHHHHHHhHHHHHHHHHHHHHHHH
Q 014600          206 AYSSIFIGCCFVGIFLSRTEEPRLKMG-----LR---------------GNSHARISWAYWFKKILYYQVALVYMLTRLV  265 (422)
Q Consensus       206 ~~i~~~i~~i~~~i~~~~~~E~~~~~~-----~~---------------~~~~~~~~~~~~~~n~~f~~~~~~~~~~~~~  265 (422)
                      +.+.+++.++..++.++..||++.+++     ++               ++.+..+..++.+|||+++......++....
T Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (399)
T TIGR00893       151 FIIEGVLGIIWGVLWLKFIPDPPQKAKWLTEEEKYIVVGGLLAEQQGKGPSTPKKYQIKELLKDRRVWGLALGQFLVNIG  230 (399)
T ss_pred             HHHHHHHHHHHHHHhhheecCCCCccccCCHHHHhhcchhhccccccccccCCCccchHHHhcCHHHHHHHHHHHHHHhH
Confidence            887777777666666666666543110     00               0011223467889999988877777777777


Q ss_pred             HHhhhHHHHHHhhhccCccchhHh---H---------HHHHH-------------------HHHHHH-HHHH---H----
Q 014600          266 VNVSQAYLAFYVINDLRMGQSAKA---L---------VPAII-------------------YICSFI-VSIL---L----  306 (422)
Q Consensus       266 ~~~~~~y~~~y~~~~~~l~~~~~~---~---------iP~~~-------------------~~~~~~-~~~~---~----  306 (422)
                      ......++|.|+.+..+.+.....   .         .+...                   ...+.+ ....   .    
T Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  310 (399)
T TIGR00893       231 LGFFLTWFPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARKTAIIAGLVLSLLMFATNYVN  310 (399)
T ss_pred             HHHHHHHHHHHHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHhccch
Confidence            778888999999887776543211   0         00000                   000000 0000   0    


Q ss_pred             H--------HH----------HhhhhhhhhcCccccccceehhhHHHHHHHHHHHHHHHHHhHhhCC
Q 014600          307 Q--------VT----------GISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQSMSP  355 (422)
Q Consensus       307 ~--------v~----------~~~~~~~~~g~r~~g~~~~~s~~~~~~K~~~a~~~~i~g~~l~~~G  355 (422)
                      .        ..          ...+..+..++++.|.  .+|..+...++|..+++.+.|.+.+..|
T Consensus       311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~--~~~~~~~~~~~g~~~~~~i~g~l~~~~g  375 (399)
T TIGR00893       311 IPYAALALVALGFFGLGAGAIGWALISDNAPGNIAGL--TGGLINSLGNLGGIVGPIVIGAIAATTG  375 (399)
T ss_pred             hHHHHHHHHHHHHhchhhhhHHHHHHHhhcChhHHHH--HHHHHHHHHHHhhhhhhHHhhhhccCCC
Confidence            0        00          1223455667778888  9999999999999999999999988766

>PRK11663 regulatory protein UhpC; Provisional

Probab=99.81  E-value=3.5e-17  Score=165.54  Aligned_cols=289  Identities=12%  Similarity=0.087  Sum_probs=185.6

Q ss_pred             HHHHHHHHHHHHhCCChhHHHHHHHHHHHHhhhhhhhhhhhhcccCCchhHHHHHHHHHHHHHHHhhcCccCccccCCcc
Q 014600           42 CWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTST  121 (422)
Q Consensus        42 ~~~~~l~~f~t~~gls~~~~g~i~~i~~l~~ai~~p~~G~lsDr~Grrrp~ll~g~i~~~i~~~~lf~~~~p~~~~~~~~  121 (422)
                      ....+++.+.++.|+|+.++|++.++..+..++..|+.|+++||+||||. +..+.+..+++..+.-.       .+  +
T Consensus        41 ~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~-~~~~~~~~~~~~~~~~~-------~~--~  110 (434)
T PRK11663         41 SFNAAMPEMLADLGLSRSDIGLLATLFYITYGVSKFVSGIVSDRSNARYF-MGIGLIATGIINILFGF-------SS--S  110 (434)
T ss_pred             hHHHhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhcCCchh-HHHHHHHHHHHHHHHHH-------Hh--H
Confidence            44556677777679999999999999999999999999999999999887 56677777766544321       11  1


Q ss_pred             chhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchHHH
Q 014600          122 LKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQ  201 (422)
Q Consensus       122 ~~~~~~~~~~~~~l~~~~~~~~~~p~~al~~~~t~~~~eR~~l~~~~~~~~~ig~~l~~~~~~~l~~~~~~~g~~~~~~~  201 (422)
                      .+    .+.+...+.+++.+....+..+++.++.+ ++||++..++.+....+|..+++.+.+.+.+          ..+
T Consensus       111 ~~----~l~~~~~l~g~~~g~~~~~~~~~~~~~~~-~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~----------~~g  175 (434)
T PRK11663        111 LW----AFALLWVLNAFFQGWGWPVCAKLLTAWYS-RTERGGWWAIWNTAHNVGGALIPLVVGAIAL----------HYG  175 (434)
T ss_pred             HH----HHHHHHHHHHHHHHccchHHHHHHHHhCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------ccc
Confidence            11    11222234566666666677888899875 6789999999999888988887766555442          237


Q ss_pred             HHHHHHHHHHHHHHHHhhhhccccCccccc---------cc-----CCC----cchhhhHH-HHHHhHHHHHHHHHHHHH
Q 014600          202 YRWIAYSSIFIGCCFVGIFLSRTEEPRLKM---------GL-----RGN----SHARISWA-YWFKKILYYQVALVYMLT  262 (422)
Q Consensus       202 ~~~~~~i~~~i~~i~~~i~~~~~~E~~~~~---------~~-----~~~----~~~~~~~~-~~~~n~~f~~~~~~~~~~  262 (422)
                      |++.+.+.+++.++..++.++..||++.+.         ++     +++    .+.++.++ ..+|||.++.+...+++.
T Consensus       176 w~~~f~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (434)
T PRK11663        176 WRYGMMIAGIIAIVVGLFLCWRLRDKPQAMGLPSVGEWRHDALELAQQQEGAGLSRKEILTKYVLLNPYIWLLSFSYVLV  255 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCCHhhcCCCCcccccccccccchhccccCCChhhhHHHHHhcChHHHHHHHHHHHH
Confidence            888888777766655554555566654211         00     000    11122222 356778877766666666


Q ss_pred             HHHHHhhhHHHHHHhhhccCccchhHhHH----------------------------HHH-HHHHHHHHHH---H-HH--
Q 014600          263 RLVVNVSQAYLAFYVINDLRMGQSAKALV----------------------------PAI-IYICSFIVSI---L-LQ--  307 (422)
Q Consensus       263 ~~~~~~~~~y~~~y~~~~~~l~~~~~~~i----------------------------P~~-~~~~~~~~~~---~-~~--  307 (422)
                      .........++|.|+.++.+++.......                            +.. ....+.....   . ..  
T Consensus       256 ~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~  335 (434)
T PRK11663        256 YVVRAAINDWGNLYMSETLGVDLVTANSAVSMFELGGFIGALVAGWGSDKLFNGNRGPMNLIFAAGILLSVGSLWLMPFA  335 (434)
T ss_pred             HHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCccHHHHHHHHHHHHHHHHHHHcccc
Confidence            66666777899999987777765431100                            000 0000000000   0 00  


Q ss_pred             ----------HHH-----h-----hhhhhhhcCccccccceehhhHHHHHHHHHHHHHHHHHhHhhCCCc
Q 014600          308 ----------VTG-----I-----SMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQSMSPTV  357 (422)
Q Consensus       308 ----------v~~-----~-----~~~~~~~g~r~~g~~~~~s~~~~~~K~~~a~~~~i~g~~l~~~Gy~  357 (422)
                                ..+     +     ....+..+++..|.  ..|..++..++|+++++.+.|++.+..||+
T Consensus       336 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~--~~g~~~~~~~~g~~~~p~~~g~l~~~~g~~  403 (434)
T PRK11663        336 SYVMQAACFFTIGFFVFGPQMLIGMAAAECSHKEAAGA--ATGFVGLFAYLGAALSGYPLAKVLEIWHWT  403 (434)
T ss_pred             cHHHHHHHHHHHHHHHhhHHHHHHHHHHhcccHhhHHh--HHHHHHHHHHHHHHHhcccHHHHHHhcccH
Confidence                      001     0     01234445667777  899999999999999999999999988764

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.81  E-value=2e-17  Score=166.17  Aligned_cols=307  Identities=10%  Similarity=0.000  Sum_probs=190.7

Q ss_pred             eeeeccchhHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHhhhhhhhhhhhhcccCCchhHHHHHHHHHHHHHHH
Q 014600           27 LYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSS  106 (422)
Q Consensus        27 ~~y~~g~~~~~~~~~~~~~~l~~f~t~~gls~~~~g~i~~i~~l~~ai~~p~~G~lsDr~Grrrp~ll~g~i~~~i~~~~  106 (422)
                      ..+-.+.+...+...+....++.+..+.+.++.++|++.....+...+..|+.|+++||+||||. +..+.+..++++..
T Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~-l~~~~~~~~~~~~~   98 (417)
T PRK10489         20 RAVFIARFISIFGLGLLGVAVPVQIQMMTGSTLQVGLSVTLTGGAMFIGLMVGGVLADRYDRKKL-ILLARGTCGLGFIG   98 (417)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCceE-EEehHHHHHHHHHH
Confidence            33444566666666777777888877777799999999999999999999999999999999988 44565555555433


Q ss_pred             hhcCccCccccCCccchhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCccchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 014600          107 VFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIV  186 (422)
Q Consensus       107 lf~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~al~~~~t~~~~eR~~l~~~~~~~~~ig~~l~~~~~~~l  186 (422)
                      +..   + .+....+.+    ...+..++.+++.+....+..++.+++.+ +++|++..+.......+|..+++.+++.+
T Consensus        99 ~~~---~-~~~~~~~~~----~l~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~g~~l~g~l  169 (417)
T PRK10489         99 LAL---N-AFLPEPSLL----AIYLLGLWDGFFGSLGVTALLAATPALVG-RENLMQAGAITMLTVRLGSVISPALGGLL  169 (417)
T ss_pred             HHH---H-HHcCCCcHH----HHHHHHHHHHHHHHHHHHHHhhhhhhccC-HHHHHHHHHHHHHHHhHHHHhHHHHHHHH
Confidence            210   0 000111111    12223345677777777788889999886 57899999998888888888888777655


Q ss_pred             HhhccCCCCCchHHHHHHHHHHHHHHHHHHHhhhhccccCcccccccC--CCcchhhhHHHHHHhHHHHHHHHHHHHHHH
Q 014600          187 FSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLR--GNSHARISWAYWFKKILYYQVALVYMLTRL  264 (422)
Q Consensus       187 ~~~~~~~g~~~~~~~~~~~~~i~~~i~~i~~~i~~~~~~E~~~~~~~~--~~~~~~~~~~~~~~n~~f~~~~~~~~~~~~  264 (422)
                      .+.          .+|+|.+.+.++..++.. ++.+.+||.+.+++++  +.++.++.++..+|||.++...+..++...
T Consensus       170 ~~~----------~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (417)
T PRK10489        170 IAA----------GGVAWNYGLAAAGTFITL-LPLLRLPALPPPPQPREHPLRSLLAGFRFLLASPVVGGIALLGGLLTM  238 (417)
T ss_pred             HHH----------HhhHHHHHHHHHHHHHHH-HHHHhCCCCCCCCcccccchHHHHHHHHHHHcChHHHHHHHHHHHHHH
Confidence            532          366776666555444443 3344555543221111  112334556778888887655443333222


Q ss_pred             HHHhhhHHHHHHhhhccCccchhHhHHH----H-------H------------HHHHHHHHH---HHH----H-------
Q 014600          265 VVNVSQAYLAFYVINDLRMGQSAKALVP----A-------I------------IYICSFIVS---ILL----Q-------  307 (422)
Q Consensus       265 ~~~~~~~y~~~y~~~~~~l~~~~~~~iP----~-------~------------~~~~~~~~~---~~~----~-------  307 (422)
                       ......++|.|..+..+.+....+.+-    .       .            ....+.+..   ++.    +       
T Consensus       239 -~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  317 (417)
T PRK10489        239 -ASAVRVLYPALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLFGLMPMWILAVL  317 (417)
T ss_pred             -HHhHHHhhHHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHHccchHHHHHH
Confidence             345677889999886776654321000    0       0            001111000   000    0       


Q ss_pred             ---HHH----------hhhhhhhhcCccccccceehhhHHHHHHHHHHHHHHHHHhHhhCCCc
Q 014600          308 ---VTG----------ISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQSMSPTV  357 (422)
Q Consensus       308 ---v~~----------~~~~~~~~g~r~~g~~~~~s~~~~~~K~~~a~~~~i~g~~l~~~Gy~  357 (422)
                         +.+          .....+...++..|.  .+|..+....+|+++|+.+.|++.+..|+.
T Consensus       318 ~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~--~~g~~~~~~~~g~~~g~~l~G~l~~~~g~~  378 (417)
T PRK10489        318 CLALFGYLSAISSLLQYTLLQTQTPDEMLGR--INGLWTAQNVTGDAIGAALLGGLGAMMTPV  378 (417)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhCCHHHHHH--HHHHHHHHHhhhHhHHHHHHHHHHHHhchh
Confidence               001          112234445666777  899999999999999999999998887653

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=99.80  E-value=1.9e-17  Score=159.94  Aligned_cols=323  Identities=11%  Similarity=0.063  Sum_probs=222.6

Q ss_pred             CCCCceeeeeeeccchhHHHHHHHHH-HHHHHHHHHh-C---CC----hhHHHHHHHHHHHHhhhhhhhhhhhhcccCCc
Q 014600           19 QPVGRWSVLYYGSGHMLNDITAACWF-TYLLLFLTDI-G---LS----PRGAAAVMLSGQIADGFATIFIGELIDRFGHF   89 (422)
Q Consensus        19 ~~l~~~~~~~y~~g~~~~~~~~~~~~-~~l~~f~t~~-g---ls----~~~~g~i~~i~~l~~ai~~p~~G~lsDr~Grr   89 (422)
                      ++...+...+|.+.|++++-...++. .++|.|+++. +   .+    .+..|...+++.+.-++..|+.|.++|+.|+|
T Consensus         9 ~~~~~~~~~sWilyD~~~~p~~~ivtt~ifply~~~~~~~~g~~~~~~~a~~gy~~aia~llia~LapiLG~iaD~~g~R   88 (438)
T COG2270           9 MPKLRKGIKSWILYDWGSSPFFAIVTTFIFPLYFTSVAGAGGVDPASSTAYWGYASAIAGLLIALLAPILGTIADYPGPR   88 (438)
T ss_pred             cccccccceeEEEeeccCCceeeeeeeehhHHHHHHHHhhcCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhccCCCc
Confidence            33455667888888988877665554 5789999985 3   23    46789999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHHhhcCccCccccCCccchhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCccchhhHHHHHH
Q 014600           90 KIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRN  169 (422)
Q Consensus        90 rp~ll~g~i~~~i~~~~lf~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~al~~~~t~~~~eR~~l~~~~~  169 (422)
                      |+|+-..+.+-.++..++|+  +|     +.+.++..+.+   .++..+++.+.+++|++++++.++ +++-+++++...
T Consensus        89 k~~~~~f~~i~i~~~~~L~~--i~-----~~s~~~~~l~~---~il~~i~~~~s~Vfyds~L~~~~~-k~~~~riS~lg~  157 (438)
T COG2270          89 KKFFGFFTAIGIISTFLLWF--IP-----PGSYLLLLLLF---LILASIGFEFSNVFYDSMLPRLTT-KDNMGRISGLGW  157 (438)
T ss_pred             chHHHHHHHHHHHHHHHHHH--hC-----CCchHHHHHHH---HHHHHHhcchhheehhhHhhhhcC-ccccCccccccc
Confidence            99998888888887777774  33     22333332222   246788899999999999999986 556677888877


Q ss_pred             HHHHHHHHHHHHHHHHHHhhccCC-------CC-CchHHHHHHHHHHHHHHHHHHHhhhhccccCcccccccCCC-----
Q 014600          170 AFTMVANLSLYAIAFIVFSVSTAK-------TH-ADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGN-----  236 (422)
Q Consensus       170 ~~~~ig~~l~~~~~~~l~~~~~~~-------g~-~~~~~~~~~~~~i~~~i~~i~~~i~~~~~~E~~~~~~~~~~-----  236 (422)
                      ..+++|+.+..++....+...+..       |. ......-|..+.+.++..++..+-.++.+|+.+... ++++     
T Consensus       158 ~~gylgs~i~li~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ri~~~l~A~W~li~~iPm~~~v~~~~~~~-~~~~~~l~~  236 (438)
T COG2270         158 ALGYLGSVILLIFVVLGFALGQQTGITIILLGLPPADGEDVRITGLLAALWWLLFALPMILNVHDAEKIS-SPPPTALRN  236 (438)
T ss_pred             ccccccchHHHHHHHHHHhcccccceeEEeeccCccccccchhHHHHHHHHHHHHHhHHHhccccccccc-ccchHHHHH
Confidence            788888876554432221111100       00 011234566777777777777777788888865321 1111     


Q ss_pred             --cchhhhHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhccCccchhHhHHHHHHHHHHHHHHHHHH-------
Q 014600          237 --SHARISWAYWFKKILYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQ-------  307 (422)
Q Consensus       237 --~~~~~~~~~~~~n~~f~~~~~~~~~~~~~~~~~~~y~~~y~~~~~~l~~~~~~~iP~~~~~~~~~~~~~~~-------  307 (422)
                        ++.++.+|++.+.|....+++.+++.+-+.++....-..|-.++.+++...+..+-...-+.+...+++.+       
T Consensus       237 g~k~L~~t~k~i~~~~~i~~FLiA~~~~~DGv~til~~~~~fg~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg  316 (438)
T COG2270         237 GFKELKSTFKEIRGRKNLVLFLIARFFYIDGVNTILAMGGVFGAADLGLSSTELLLIGIALSVVAALGAIIAGFLDERFG  316 (438)
T ss_pred             HHHHHHHHHHHHhcccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence              23456677777888888888999998888888888888899989998876643222111111111110000       


Q ss_pred             ---------------------------------HH----------HhhhhhhhhcCccccccceehhhHHHHHHHHHHHH
Q 014600          308 ---------------------------------VT----------GISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAV  344 (422)
Q Consensus       308 ---------------------------------v~----------~~~~~~~~~g~r~~g~~~~~s~~~~~~K~~~a~~~  344 (422)
                                                       +.          +.+......-+++||.  +||.++...|.++-+|+
T Consensus       317 ~k~vl~~~lvi~~~~~~~~~~~~~~~~f~i~gll~g~s~G~~qA~SRSy~~~lvp~~k~~~--fFglyaltgra~S~~gp  394 (438)
T COG2270         317 SKPVLMIGLVILSIAALYLIFLEGELDFWILGLLVGTSLGGAQASSRSYLARLVPKGKEGR--FFGLYALTGRAASFLGP  394 (438)
T ss_pred             CceeehHHHHHHHHHHHHHHHccccHHHHHHHHHHHHhcchHHHHHHHHHHHhCCCccccc--eeehhhhhhhHHHHHHH
Confidence                                             00          1233444556789999  99999999999999999


Q ss_pred             HHHHHhHhhCC
Q 014600          345 YVLQSYQSMSP  355 (422)
Q Consensus       345 ~i~g~~l~~~G  355 (422)
                      ...+.+.+.+|
T Consensus       395 ~lv~v~t~iTg  405 (438)
T COG2270         395 FLVAVITQITG  405 (438)
T ss_pred             HHHHHHHHHhc
Confidence            99999988776

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=99.79  E-value=2.3e-16  Score=156.05  Aligned_cols=288  Identities=10%  Similarity=0.027  Sum_probs=195.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHhhhhhhhhhhhhcccCCchhHHHHHHHHHHHHHHHhhcCccCc
Q 014600           35 LNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPC  114 (422)
Q Consensus        35 ~~~~~~~~~~~~l~~f~t~~gls~~~~g~i~~i~~l~~ai~~p~~G~lsDr~Grrrp~ll~g~i~~~i~~~~lf~~~~p~  114 (422)
                      .++..+......+|...+|.|+++.+.|++.+...+..++..+..|+++||+|||+. +. +.....+.......     
T Consensus         2 ~~~~~~~~~~~~lp~i~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~-~~-~~~~~~~~~~~~~~-----   74 (368)
T TIGR00903         2 ASQAIWVTFSPVLSLVAEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDRAFKRWF-LF-GSLATFAAAAGRLL-----   74 (368)
T ss_pred             hhhHHHHHHHhhHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHH-HH-HHHHHHHHHHHHHH-----
Confidence            456667777777777777779999999999999999999999999999999998765 43 33333333222111     


Q ss_pred             cccCCccchhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCCC
Q 014600          115 RILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKT  194 (422)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~al~~~~t~~~~eR~~l~~~~~~~~~ig~~l~~~~~~~l~~~~~~~g  194 (422)
                        .. .+.    ..+++.+++.+++.+.. .+..+..+|..+ ++||++..++...+..+|.++++.++.++..      
T Consensus        75 --~~-~~~----~~l~~~R~l~G~g~~~~-~~~~~~~~~~~~-~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~------  139 (368)
T TIGR00903        75 --DP-FNY----EWLLACQLLAALGQPFL-LNAFAPAASQIR-EERRDLVISLLSFAMYLGIIFALAAGLKIYT------  139 (368)
T ss_pred             --Hh-ccH----HHHHHHHHHHHhHhHHH-HHHHHHHHHHcC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------
Confidence              10 111    22333445677777653 445555688876 6899999999999999999998877766543      


Q ss_pred             CCchHHHHHHHHHHHHHHHHHHHhhhhccccCcccccccC-CCcchhhhHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHH
Q 014600          195 HADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLR-GNSHARISWAYWFKKILYYQVALVYMLTRLVVNVSQAYL  273 (422)
Q Consensus       195 ~~~~~~~~~~~~~i~~~i~~i~~~i~~~~~~E~~~~~~~~-~~~~~~~~~~~~~~n~~f~~~~~~~~~~~~~~~~~~~y~  273 (422)
                          ..+||+.+.+.++++++..++.++.+||++.+++++ +..+..+.+++++|||.++.+...+++......+..+|.
T Consensus       140 ----~~gWr~~f~~~~~l~~~~~~~~~~~lp~~p~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~wl  215 (368)
T TIGR00903       140 ----AGGLQLLIIPIAAVAAAGIILVLAALPALPFQAAEGFGFKDAVKEFGALAGRKDLWIIGAILGFGVALFDNLAIWL  215 (368)
T ss_pred             ----ccchHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCcchHHHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHH
Confidence                248999999888888888777888889865432211 111222457889999999888888888888888889999


Q ss_pred             HHHhhhccCccchh--HhHHHHHH------H--------------H------HHHHHHHHH---H---------HH----
Q 014600          274 AFYVINDLRMGQSA--KALVPAII------Y--------------I------CSFIVSILL---Q---------VT----  309 (422)
Q Consensus       274 ~~y~~~~~~l~~~~--~~~iP~~~------~--------------~------~~~~~~~~~---~---------v~----  309 (422)
                      |.|+.+ .+++...  ...+|...      +              .      .+.....+.   +         +.    
T Consensus       216 p~~L~~-~g~s~~~~~~~~l~~~~g~~g~~~~~d~~~r~~~r~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~  294 (368)
T TIGR00903       216 EAALRP-AGLEDIAGDAVALAILAGLIGVAVIPDRVARAGLRSIYIRAAALLIAAFFLALAFELNRLALFAFIGIAGLLM  294 (368)
T ss_pred             HHHHHH-CCCChHHHHHHHHHHHHHHHHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHhh
Confidence            999976 3454321  11111110      0              0      000000000   0         00    


Q ss_pred             ------HhhhhhhhhcCccccccceehhhHHHHHHHHHHHHHHHHHhH
Q 014600          310 ------GISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQ  351 (422)
Q Consensus       310 ------~~~~~~~~~g~r~~g~~~~~s~~~~~~K~~~a~~~~i~g~~l  351 (422)
                            ...+..+...++..|+  ..|..+...+++...++.+.+.++
T Consensus       295 ~~~~~~~~~~~~~~~p~~~rgt--~~G~~~~~g~~~~~~~~~~~~~~~  340 (368)
T TIGR00903       295 LPAYAIIMDWIGKFCDKELHGK--AAGAIGFTSRAISVALALAAMLFI  340 (368)
T ss_pred             hhhHHHHHHHHHHhcchhhcCc--ccchhhHHHHHHHHHHHHHHHHHh
Confidence                  0123456677888888  999999999999889998888876

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.79  E-value=4.2e-17  Score=164.14  Aligned_cols=308  Identities=10%  Similarity=0.022  Sum_probs=163.5

Q ss_pred             eeeeccchhHHHHHHHHHHHHHHHHHHh-CCChhHHHHHHHHHHHHhhhhhhhhhhhhcccCCchhHHHHHHHHHHHHHH
Q 014600           27 LYYGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFS  105 (422)
Q Consensus        27 ~~y~~g~~~~~~~~~~~~~~l~~f~t~~-gls~~~~g~i~~i~~l~~ai~~p~~G~lsDr~Grrrp~ll~g~i~~~i~~~  105 (422)
                      .......+...+.+....++++.|+++. |+++.++|++.++..+.+.+.+|+.|+++||+||||..+ .+....++...
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~g~r~~~~-~~~~~~~~~~~   91 (420)
T PRK09528         13 WIFSLFFFFFFFIWSSWFSFFPIWLHDINGLSGTDTGIIFSANSLFALLFQPLYGLISDKLGLKKHLL-WIISGLLVLFG   91 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHH-HHHHHHHHHHH
Confidence            3344455666666777889999999996 999999999999999999999999999999999999854 33333333222


Q ss_pred             HhhcCccCccccCCccchhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhccCC-ccchhhHHHHHHHHHHHHHHHHHHHHH
Q 014600          106 SVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLN-STSRVVLTSCRNAFTMVANLSLYAIAF  184 (422)
Q Consensus       106 ~lf~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~al~~~~t~~-~~eR~~l~~~~~~~~~ig~~l~~~~~~  184 (422)
                      .++.  ..  ..   ... . ..+.....+.++..+....+......+++++ .++|++..+.......+|..+++.+++
T Consensus        92 ~~~~--~~--~~---~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g  162 (420)
T PRK09528         92 PFFI--YV--FA---PLL-Q-YNILLGAIVGGIYLGFGFLAGAGAIEAYIERVSRRSGFEYGRARMWGSLGWALCAFIAG  162 (420)
T ss_pred             HHHH--HH--HH---HHH-H-HHHHHHHHHHHHHhhhhhccchhhhhhHHHHHHhhccccchhhHHhhhHHHHHHHHHHH
Confidence            1110  00  00   000 0 0000000111222222222222233333321 234555556555667777777766654


Q ss_pred             HHHhhccCCCCCchHHHHHHHHHHHHHHHHHHHhhhhccccCccccc---ccC---CCcchhhhHHHHHHhHHHHHHHHH
Q 014600          185 IVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKM---GLR---GNSHARISWAYWFKKILYYQVALV  258 (422)
Q Consensus       185 ~l~~~~~~~g~~~~~~~~~~~~~i~~~i~~i~~~i~~~~~~E~~~~~---~~~---~~~~~~~~~~~~~~n~~f~~~~~~  258 (422)
                      .+.+           .+|++.+++.+++++++.++.++..+|+++++   +++   ++....+..++.+|||+++.+.+.
T Consensus       163 ~l~~-----------~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~l~  231 (420)
T PRK09528        163 ILFN-----------INPQINFWLGSGSALILLVLLFFAKPDAPSTAKVANALGANASAVSLKDALALLKLPKFWFLVLY  231 (420)
T ss_pred             HHHh-----------cCchHhHHHHHHHHHHHHHHHhcccccccchhhhccchhcccccccHHHHHHHccCCCeEeehHH
Confidence            4432           25666677666666665555554444433221   001   111123445678889987654443


Q ss_pred             HHHHHHHHHhhhHHHHHHhhhcc---CccchhHh---H------HHHHH--------------HHHHHH-------HHHH
Q 014600          259 YMLTRLVVNVSQAYLAFYVINDL---RMGQSAKA---L------VPAII--------------YICSFI-------VSIL  305 (422)
Q Consensus       259 ~~~~~~~~~~~~~y~~~y~~~~~---~l~~~~~~---~------iP~~~--------------~~~~~~-------~~~~  305 (422)
                      ..+..........++|.|..+..   +.+.....   .      .+...              ...+.+       ...+
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~  311 (420)
T PRK09528        232 VIGVACFYDVFDQQFPNFFASFFATPEQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGF  311 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHh
Confidence            33333333333344555554321   22221110   0      00000              001000       0000


Q ss_pred             HH----------HHH----------hhhhhhhhcCccccccceehh-hHHHHHHHHHHHHHHHHHhHhhCCCc
Q 014600          306 LQ----------VTG----------ISMQNVLVGEDLSGCAFVCGT-LSFLDKMSCGIAVYVLQSYQSMSPTV  357 (422)
Q Consensus       306 ~~----------v~~----------~~~~~~~~g~r~~g~~~~~s~-~~~~~K~~~a~~~~i~g~~l~~~Gy~  357 (422)
                      .+          +.+          ....++..++|..++  .++. +++..++|..+++.+.|++.+..||.
T Consensus       312 ~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~a~--~~~~~~~~~~~lg~~ig~~~~G~l~~~~G~~  382 (420)
T PRK09528        312 ATGPLEVSILKLLHAFEVPFLLVGVFKYITLNFDVRLSAT--IYLVGFQFAKQLGAVFLSTLAGNLYDSIGFQ  382 (420)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccceee--eeeehHHHHHHHHHHHHHHHHHHHHHhhCch
Confidence            00          000          112345567777777  6665 68889999999999999999988875

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=99.79  E-value=2.7e-16  Score=153.27  Aligned_cols=311  Identities=10%  Similarity=-0.052  Sum_probs=222.4

Q ss_pred             CCCCCceeeeeeeccchhHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHhhhhhhhhhhhhcccCCchhHHHHHH
Q 014600           18 TQPVGRWSVLYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGS   97 (422)
Q Consensus        18 ~~~l~~~~~~~y~~g~~~~~~~~~~~~~~l~~f~t~~gls~~~~g~i~~i~~l~~ai~~p~~G~lsDr~Grrrp~ll~g~   97 (422)
                      +++..+...+..+++.|.......+....++.--.|.|+|...+|.+.+++.+..+++.|+...+.||+.|||. ++...
T Consensus         7 ~~~~~~~~l~aLa~~~F~igttEfv~~gLLp~iA~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~l-Ll~~l   85 (394)
T COG2814           7 ARKPMWLALLALALAAFAIGTTEFVPVGLLPPIAADLGVSEGAAGQLITAYALGVALGAPLLALLTGRLERRRL-LLGLL   85 (394)
T ss_pred             ccccchHHHHHHHHHHHHHHhHHHHHHhchHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHH-HHHHH
Confidence            45566677888999999988888888899999999999999999999999999999999999999999999988 55667


Q ss_pred             HHHHHHHHHhhcCccCccccCCccchhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCccchhhHHHHHHHHHHHHHH
Q 014600           98 VLVAVSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANL  177 (422)
Q Consensus        98 i~~~i~~~~lf~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~al~~~~t~~~~eR~~l~~~~~~~~~ig~~  177 (422)
                      .++.++-.+...       +++      +...++.+++.++..+.+..-..+..+++.+ +++|++..+.-..+..++.+
T Consensus        86 ~lFi~~n~l~al-------Ap~------f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvp-p~~~~~Aiaiv~~G~tlA~v  151 (394)
T COG2814          86 ALFIVSNLLSAL-------APS------FAVLLLARALAGLAHGVFWSIAAALAARLVP-PGKRGRALALVFTGLTLATV  151 (394)
T ss_pred             HHHHHHHHHHHH-------hcc------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-ccchhhHHHHHHHHHHHHHH
Confidence            777777655442       222      2334445566777777777777888889987 68999999988777777666


Q ss_pred             HHHHHHHHHHhhccCCCCCchHHHHHHHHHHHHHHHHHHHhhhhccccCcccccccCCCcchhhhHHHHHHhHHHHHHHH
Q 014600          178 SLYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISWAYWFKKILYYQVAL  257 (422)
Q Consensus       178 l~~~~~~~l~~~~~~~g~~~~~~~~~~~~~i~~~i~~i~~~i~~~~~~E~~~~~~~~~~~~~~~~~~~~~~n~~f~~~~~  257 (422)
                      ++    .|+-..++      +..|||..|.+.+.+++++.+..+..+| ++.. +++.+.+.++. .+.+|||..+....
T Consensus       152 ~G----vPLGt~ig------~~~GWR~~F~~ia~l~ll~~~~~~~~lP-~~~~-~~~~~~~~~~~-~~~l~~p~v~~~l~  218 (394)
T COG2814         152 LG----VPLGTFLG------QLFGWRATFLAIAVLALLALLLLWKLLP-PSEI-SGSLPGPLRTL-LRLLRRPGVLLGLL  218 (394)
T ss_pred             Hh----ccHHHHHH------HHhhHHHHHHHHHHHHHHHHHHHHHhCC-CccC-CCCCCcchhHH-HHHhcCchHHHHHH
Confidence            54    45555543      3579999999999999999888888888 2211 11222233333 57789999888777


Q ss_pred             HHHHHHHHHHhhhHHHHHHhhhccCccchhHhHHHHHHHHHHH------------------------------HHHHHHH
Q 014600          258 VYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSF------------------------------IVSILLQ  307 (422)
Q Consensus       258 ~~~~~~~~~~~~~~y~~~y~~~~~~l~~~~~~~iP~~~~~~~~------------------------------~~~~~~~  307 (422)
                      ..++...+.....+|.-.++++..+++.+....+-+..-+.+.                              .+.+..+
T Consensus       219 ~t~l~~~g~F~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr~~~~~l~~~~~l~a~~~l~l~~~~~  298 (394)
T COG2814         219 ATFLFMTGHFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADRGPRRALIAALLLLALALLALTFTGA  298 (394)
T ss_pred             HHHHHHcchhhhHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHHHHHHHHhcc
Confidence            7777777888889999999999999877543211110000000                              0000000


Q ss_pred             ----------HHH----hhhhhh---hhc--CccccccceehhhHHHHHHHHHHHHHHHHHhHhhCCCcc
Q 014600          308 ----------VTG----ISMQNV---LVG--EDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQSMSPTVL  358 (422)
Q Consensus       308 ----------v~~----~~~~~~---~~g--~r~~g~~~~~s~~~~~~K~~~a~~~~i~g~~l~~~Gy~~  358 (422)
                                +.+    +....+   ...  .+..+.  ..|.+.-..++|.++|+.+.|.+++..||..
T Consensus       299 ~~~~~~~~~~~wg~a~~~~~~~~~~~~a~~~p~~~~~--a~sl~~aa~nlgia~GA~lGG~v~~~~g~~~  366 (394)
T COG2814         299 SPALALALLFLWGFAFSPALQGLQTRLARLAPDAADL--AGSLNVAAFNLGIALGAALGGLVLDALGYAA  366 (394)
T ss_pred             hHHHHHHHHHHHHHHhhhhhhHHHHHhcccCCCchHH--HHHHHHHHHHHHHHHHHHHHHHHHHhhchHH
Confidence                      001    111111   112  245555  7899999999999999999999999988854

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.79  E-value=1.5e-16  Score=156.15  Aligned_cols=286  Identities=10%  Similarity=-0.028  Sum_probs=176.4

Q ss_pred             HHHHHHHHHHHhCCChhHHHHHHHHHHHHhhhhhhhhhhhhcccCCchhHHHHHHHHHHHHHHHhhcCccCccccCCccc
Q 014600           43 WFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTL  122 (422)
Q Consensus        43 ~~~~l~~f~t~~gls~~~~g~i~~i~~l~~ai~~p~~G~lsDr~Grrrp~ll~g~i~~~i~~~~lf~~~~p~~~~~~~~~  122 (422)
                      +..++|.+-++.|++..++|++.++..+..++.+|+.|+++||+||||.++ .+..+.+++..+...       .+  +.
T Consensus        22 ~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~G~r~~~~-~~~~~~~~~~~~~~~-------~~--~~   91 (377)
T TIGR00890        22 WTLLAPPLGRYFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKFGPRAVAM-LGGILYGLGFTFYAI-------AD--SL   91 (377)
T ss_pred             hhhHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHcCccchhH-HhHHHHHHHHHHHHH-------HH--HH
Confidence            334444444445999999999999999999999999999999999999854 567777766544321       11  11


Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchHHHH
Q 014600          123 KVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQY  202 (422)
Q Consensus       123 ~~~~~~~~~~~~l~~~~~~~~~~p~~al~~~~t~~~~eR~~l~~~~~~~~~ig~~l~~~~~~~l~~~~~~~g~~~~~~~~  202 (422)
                      +    .+.+.+.+.+++.+....+......+..  ++||++..++...+..+|.++++    |+...+.      ...+|
T Consensus        92 ~----~~~~~~~~~g~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~~~~~----~~~~~~~------~~~~~  155 (377)
T TIGR00890        92 A----ALYLTYGLASAGVGIAYGIALNTAVKWF--PDKRGLASGIIIGGYGLGSFILS----PLITSVI------NLEGV  155 (377)
T ss_pred             H----HHHHHHHHHhHHHHHHHHhHHHHHHHHc--CcccHHHHHHHHHhcchhHhHHH----HHHHHHH------hcccH
Confidence            1    1222233556666555444455566655  46899999988887777766543    3333221      12479


Q ss_pred             HHHHHHHHHHHHHHHhhhhccccCccccccc--CCCcchhhhHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhc
Q 014600          203 RWIAYSSIFIGCCFVGIFLSRTEEPRLKMGL--RGNSHARISWAYWFKKILYYQVALVYMLTRLVVNVSQAYLAFYVIND  280 (422)
Q Consensus       203 ~~~~~i~~~i~~i~~~i~~~~~~E~~~~~~~--~~~~~~~~~~~~~~~n~~f~~~~~~~~~~~~~~~~~~~y~~~y~~~~  280 (422)
                      ++.+.+.+++.++..+++++.+||++.++++  ++..+.+...++.+|||+++.....+++..........+++.|..+ 
T Consensus       156 ~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  234 (377)
T TIGR00890       156 PAAFIYMGIIFLLVIVLGAFLIGYPPGQLIKTNIEVSVKDYTVWEMLRTPQFWVLYLSFFLNAVSGLLLIGLYKPYGQS-  234 (377)
T ss_pred             HHHHHHHHHHHHHHHHHHHHheecCchhccccCcccchhhhhHHHHHcCccHHHHHHHHHHHhHHHHHHHHHHHHHHHH-
Confidence            9998888888877777777777765432211  1111223345778899988766655555444444455566666543 


Q ss_pred             cCccchhHh---HHH---------HHH-----------H-------HHHHHHHHHHH------------HHH--------
Q 014600          281 LRMGQSAKA---LVP---------AII-----------Y-------ICSFIVSILLQ------------VTG--------  310 (422)
Q Consensus       281 ~~l~~~~~~---~iP---------~~~-----------~-------~~~~~~~~~~~------------v~~--------  310 (422)
                      .+.+.....   .++         ...           .       ..+........            +.+        
T Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~  314 (377)
T TIGR00890       235 LGLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLFIPMLNDVLFLATVALVFFTWGGTIS  314 (377)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhccchh
Confidence            454432211   000         000           0       00000000000            000        


Q ss_pred             --hhhhhhhhcCccccccceehhhHHHHHHHHHHHHHHHHHhHhhCCCc
Q 014600          311 --ISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQSMSPTV  357 (422)
Q Consensus       311 --~~~~~~~~g~r~~g~~~~~s~~~~~~K~~~a~~~~i~g~~l~~~Gy~  357 (422)
                        ..+..+..++++.|.  .+|..+...++|+.+++.+.|.+.+..||.
T Consensus       315 ~~~~~~~~~~~~~~~~~--~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~  361 (377)
T TIGR00890       315 LFPSLVSDIFGPANSAA--NYGFLYTAKAVAGIFGGLIASHALTEIGFE  361 (377)
T ss_pred             ccHHHHHHHhhhhhhhh--HhHHHHHHHHHHHHHHHHHHHHHHhhhchh
Confidence              223456677788888  999999999999999999999998877764

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=99.78  E-value=4e-17  Score=160.41  Aligned_cols=289  Identities=15%  Similarity=0.103  Sum_probs=190.4

Q ss_pred             HHHHHHHHHHHHh-CCChhHHHHHHHHHHHHhhhhhhhhhhhhcccCCchhHHHHHHHHHHHHHHHhhcCccCccccCCc
Q 014600           42 CWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTS  120 (422)
Q Consensus        42 ~~~~~l~~f~t~~-gls~~~~g~i~~i~~l~~ai~~p~~G~lsDr~Grrrp~ll~g~i~~~i~~~~lf~~~~p~~~~~~~  120 (422)
                      ......+ ++.+. |++..++|++.++..+...+..|+.|+++||+||||. ++.+..+.+++..++..       .+  
T Consensus        13 ~~~~~~~-~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~-~~~~~~~~~~~~~~~~~-------~~--   81 (379)
T TIGR00881        13 NFALAMP-YLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVF-LPIGLILCAIVNLFFGF-------ST--   81 (379)
T ss_pred             hhhhhhH-HHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeeh-hHHHHHHHHHHHHHHHH-------hh--
Confidence            3333444 45554 9999999999999999999999999999999999987 55677777776655432       11  


Q ss_pred             cchhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCccchhhHHHHHHHHHHHHHHHHH-HHHHHHHhhccCCCCCchH
Q 014600          121 TLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLY-AIAFIVFSVSTAKTHADLE  199 (422)
Q Consensus       121 ~~~~~~~~~~~~~~l~~~~~~~~~~p~~al~~~~t~~~~eR~~l~~~~~~~~~ig~~l~~-~~~~~l~~~~~~~g~~~~~  199 (422)
                      +.+    .+++...+.+++.+....+..++.+|+.+ ++||++..++......+|..+++ .+...+..          .
T Consensus        82 ~~~----~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~----------~  146 (379)
T TIGR00881        82 SLW----VMAALWALNGIFQGMGWPPCGRTVTKWFS-RSERGTWVSFWNCSHNVGGGLLPPLVLFGIAE----------L  146 (379)
T ss_pred             hHH----HHHHHHHHHHhhccccCCchHHHHHHhcC-HhhheeeEeehhccchhHHHHHHHHHHHHHHh----------c
Confidence            111    22233346777777778888889999876 67899999998888888888776 23322211          2


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhccccCccccc-----cc---CC-------C----cchhhhHHHHHHhHHHHHHHHHHH
Q 014600          200 NQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKM-----GL---RG-------N----SHARISWAYWFKKILYYQVALVYM  260 (422)
Q Consensus       200 ~~~~~~~~i~~~i~~i~~~i~~~~~~E~~~~~-----~~---~~-------~----~~~~~~~~~~~~n~~f~~~~~~~~  260 (422)
                      .+|++.+.+.+++.++..+++++..||++.++     ++   ++       +    .+.+...+.++|||.++.+.+.++
T Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  226 (379)
T TIGR00881       147 YSWHWVFIVPGIIAIIVSLICFLLLRDSPQSCGLPPAEEMPNEEPDGDAEKKEEELTKKQIFLQYVLLNKVLWYISLGYV  226 (379)
T ss_pred             CCchhHHHHHHHHHHHHHHHHheeeCCCccccccCccccCcccccccccccccccccchHHHHHHHHhcchHHHHHHHHH
Confidence            36788877777777666666666666643211     00   00       0    111234567889998887777777


Q ss_pred             HHHHHHHhhhHHHHHHhhhccCccchhHhHH------------HHHH----------------H-HHHHHHHHHH-----
Q 014600          261 LTRLVVNVSQAYLAFYVINDLRMGQSAKALV------------PAII----------------Y-ICSFIVSILL-----  306 (422)
Q Consensus       261 ~~~~~~~~~~~y~~~y~~~~~~l~~~~~~~i------------P~~~----------------~-~~~~~~~~~~-----  306 (422)
                      +..........+.|.|+.+..+.+.......            +...                . ..........     
T Consensus       227 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (379)
T TIGR00881       227 FVYVVRTGILDWSPLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMALIIVSLLVYWLNP  306 (379)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHhcCc
Confidence            7667777788899999988777665332100            0000                0 0000000000     


Q ss_pred             --H---------HHH----------hhhhhhhhcCccccccceehhhHHHHHHHHHHHHHHHHHhHhhCCCcc
Q 014600          307 --Q---------VTG----------ISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQSMSPTVL  358 (422)
Q Consensus       307 --~---------v~~----------~~~~~~~~g~r~~g~~~~~s~~~~~~K~~~a~~~~i~g~~l~~~Gy~~  358 (422)
                        .         ..+          ..+..+..++++.|.  ..|..+...+++..+++.+.|.+.+..||+.
T Consensus       307 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~--~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~  377 (379)
T TIGR00881       307 AANPLMDLICLFALGFLVYGPQMLIGVIASELAPKKAAGT--AAGFVGFFAYLGGILAGLPLGYLADGFGWAG  377 (379)
T ss_pred             chhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcCcchhHH--HHHHHHHhhhhhhhhhhhhHHHHHHhhcccc
Confidence              0         001          112344566778888  9999999999999999999999999999864

>TIGR00891 2A0112 putative sialic acid transporter

Probab=99.78  E-value=1.4e-16  Score=158.37  Aligned_cols=308  Identities=13%  Similarity=0.062  Sum_probs=187.1

Q ss_pred             eeeeeeeccchhHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHhhhhhhhhhhhhcccCCchhHHHHHHHHHHHH
Q 014600           24 WSVLYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVS  103 (422)
Q Consensus        24 ~~~~~y~~g~~~~~~~~~~~~~~l~~f~t~~gls~~~~g~i~~i~~l~~ai~~p~~G~lsDr~Grrrp~ll~g~i~~~i~  103 (422)
                      +......++.+...+.........+.+..+.|++..++|++.++..+..++.+|+.|+++||+||||+++ .+.+..+++
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~-~~~~~~~~~   90 (405)
T TIGR00891        12 NAFSAAWLGWLLDAFDFFLVALVLAEVAGEFGLTTVDAASLISAALISRWFGALMFGLWGDRYGRRLPMV-TSIVLFSAG   90 (405)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHH-HHHHHHHHH
Confidence            3345555666666666666666666555555999999999999999999999999999999999999855 566666666


Q ss_pred             HHHhhcCccCccccCCccchhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCccchhhHHHHHHHHHHHHHHHHHHHH
Q 014600          104 FSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIA  183 (422)
Q Consensus       104 ~~~lf~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~al~~~~t~~~~eR~~l~~~~~~~~~ig~~l~~~~~  183 (422)
                      ..+...       .+  +.+    .+.+...+.+++.+....+..++..|+.+ +++|++..++...+..+|.++++.+.
T Consensus        91 ~~~~~~-------~~--~~~----~l~~~~~l~G~~~~~~~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~l~  156 (405)
T TIGR00891        91 TLACGF-------AP--GYI----TMFIARLVIGIGMGGEYGSSAAYVIESWP-KHLRNKASGLLISGYAVGAVVAAQVY  156 (405)
T ss_pred             HHHHHH-------hc--cHH----HHHHHHHHHHhhhhhhhHHHHHHHHHhCC-hhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            544321       11  122    12233456788888888888999999986 57999999999999899988887766


Q ss_pred             HHHHhhccCCCCCchHHHHHHHHHHHHHHHHHHHhhhhccccCccccccc-CCCcchhhhHHHHHH--------------
Q 014600          184 FIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGL-RGNSHARISWAYWFK--------------  248 (422)
Q Consensus       184 ~~l~~~~~~~g~~~~~~~~~~~~~i~~~i~~i~~~i~~~~~~E~~~~~~~-~~~~~~~~~~~~~~~--------------  248 (422)
                      ..+....        ..+|++.+.+.++..++. ++.....||++..+++ +++...++..++..+              
T Consensus       157 ~~l~~~~--------~~~w~~~f~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (405)
T TIGR00891       157 SLVVPVW--------GDGWRALFFISILPIIFA-LWLRKNIPEAEDWKEKHAGKALVRTMVDILYGGEHRIANIVMTLAA  227 (405)
T ss_pred             HHHHHhc--------CccHHHHHHHHHHHHHHH-HHHHHhCCCChhHHHHhhhhhhhhhHHHHHhccchhhhhhhhhhhH
Confidence            5554421        125888877654444443 3344556765321110 000000111111110              


Q ss_pred             --------hHH-HHHHHHHHHHHHHHHHhhhHHHHHHhhhccCccchhHhHH------------HHHH-----------H
Q 014600          249 --------KIL-YYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALV------------PAII-----------Y  296 (422)
Q Consensus       249 --------n~~-f~~~~~~~~~~~~~~~~~~~y~~~y~~~~~~l~~~~~~~i------------P~~~-----------~  296 (422)
                              ++. +........+..........++|.|..++.+++......+            +...           .
T Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~  307 (405)
T TIGR00891       228 AMVQSAGKRWPTFVYLVVLVLFANLYSHPIQDLLPTYLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWLGRRKAY  307 (405)
T ss_pred             HhhhhhhhhhHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhhh
Confidence                    001 1112222223333444566788989887777665432100            0000           0


Q ss_pred             HHHHHHH------HHH--H----------HH----------HhhhhhhhhcCccccccceehhhHHHHHHHHHHHHHHHH
Q 014600          297 ICSFIVS------ILL--Q----------VT----------GISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQ  348 (422)
Q Consensus       297 ~~~~~~~------~~~--~----------v~----------~~~~~~~~~g~r~~g~~~~~s~~~~~~K~~~a~~~~i~g  348 (422)
                      ..+.+..      ...  .          +.          ...+..+..+++..|.  .+|..+.+.+++..+++.+.|
T Consensus       308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~~~~~~~~g~~~g~~~~g  385 (405)
T TIGR00891       308 VCSLLAGQLLIIPVFAIGANVAVLGLGLFFQQMLVQGIWGILPKHLGEYFPTDQRAA--GLGFTYQLGNLGGALAPIIGA  385 (405)
T ss_pred             HHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHccchhhHHHHHhhhCCcchhHH--HhhHHHHHHHHHHHHHHHHHH
Confidence            1110000      000  0          00          0122344556667787  899999999999999999999


Q ss_pred             HhHhhCC-Cc
Q 014600          349 SYQSMSP-TV  357 (422)
Q Consensus       349 ~~l~~~G-y~  357 (422)
                      .+.+..| |+
T Consensus       386 ~l~~~~g~~~  395 (405)
T TIGR00891       386 LLAQRLDEYG  395 (405)
T ss_pred             HHHHhccccc
Confidence            9999988 74

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=99.78  E-value=2.1e-16  Score=157.67  Aligned_cols=304  Identities=12%  Similarity=0.054  Sum_probs=167.4

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHh-CCChhHHHHHHHHHHHHhhhhhhhhhhhhcccCCchhHHHHHHHHHHHHHHHhhcC
Q 014600           32 GHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGG  110 (422)
Q Consensus        32 g~~~~~~~~~~~~~~l~~f~t~~-gls~~~~g~i~~i~~l~~ai~~p~~G~lsDr~Grrrp~ll~g~i~~~i~~~~lf~~  110 (422)
                      ..+.....+....++++.|++|. |+++.++|++..+..+...+.+|+.|+++||+||||+.+. +....++.....+. 
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~grr~~~~~-~~~~~~~~~~~~~~-   87 (396)
T TIGR00882        10 FFFLYFFIMSAYFPFFPIWLHDVNGLSKTDTGIVFSCISLFSILFQPLFGLISDKLGLKKHLLW-IISGLLVLFAPFFI-   87 (396)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHH-HHHHHHHHHHHHHH-
Confidence            34445555667778999999987 9999999999999999999999999999999999998553 33333333221110 


Q ss_pred             ccCccccCCccchhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 014600          111 CMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVS  190 (422)
Q Consensus       111 ~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~al~~~~t~~~~eR~~l~~~~~~~~~ig~~l~~~~~~~l~~~~  190 (422)
                       ..  ..+..... ......+..++.+++++.......++.++..+   ++++..+......++|..+++.+++.+.+  
T Consensus        88 -~~--~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~---~~~~~~g~~~~~~~~g~~~g~~~~g~l~~--  158 (396)
T TIGR00882        88 -YV--FGPLLQSN-ILVGAIVGGLYLGFVFSAGAGAIEAYIEKVSR---NSNFEYGKARMFGCVGWALCASIAGILFS--  158 (396)
T ss_pred             -HH--hhhHHHHH-HHHHHHHHHHHHHHHhccchhhHHHHHHHhhh---hcccccchhhhhcccHHHHHHHHHhhhhc--
Confidence             00  00000000 01111111234555555555555555555332   22333334444556777666655433221  


Q ss_pred             cCCCCCchHHHHHHHHHHHHHHHHHHHhhhhccccCccccccc------CCCcchhhhHHHHHHhHHHHHHHHHHHHHHH
Q 014600          191 TAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGL------RGNSHARISWAYWFKKILYYQVALVYMLTRL  264 (422)
Q Consensus       191 ~~~g~~~~~~~~~~~~~i~~~i~~i~~~i~~~~~~E~~~~~~~------~~~~~~~~~~~~~~~n~~f~~~~~~~~~~~~  264 (422)
                               .+|+..+.+.+.+.++..++.+...+|+++++++      +++++..+++++++|||+++.+++..++...
T Consensus       159 ---------~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~  229 (396)
T TIGR00882       159 ---------IDPQIVFWLGSGFALILMLLLMFAKPKAPSSATVANALGANASAFSLKLALELFRQRKFWMFVLYVVGVAC  229 (396)
T ss_pred             ---------cCchHHHHHHHHHHHHHHHHHHHhCCCCchhhhhhcccccccCCCCHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence                     2677777777666666655554444553322110      0111223457889999998765554444444


Q ss_pred             HHHhhhHHHHHHhhhcc---CccchhH---hH------HHHHH--------------HHHHHHH---HHHH---------
Q 014600          265 VVNVSQAYLAFYVINDL---RMGQSAK---AL------VPAII--------------YICSFIV---SILL---------  306 (422)
Q Consensus       265 ~~~~~~~y~~~y~~~~~---~l~~~~~---~~------iP~~~--------------~~~~~~~---~~~~---------  306 (422)
                      .......+++.|..+..   +.+....   ..      .+...              .+.+.++   ....         
T Consensus       230 ~~~~~~~~~~~y~~~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~~~~~~~~  309 (396)
T TIGR00882       230 VYDVFDQQFANFFTSFFATPQQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSSFATTALE  309 (396)
T ss_pred             HHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhcCChHH
Confidence            44444445566655432   2222111   00      00000              0111110   0000         


Q ss_pred             ----HH-HH----------hhhhhhhhcCccccccceehh-hHHHHHHHHHHHHHHHHHhHhhCCCc
Q 014600          307 ----QV-TG----------ISMQNVLVGEDLSGCAFVCGT-LSFLDKMSCGIAVYVLQSYQSMSPTV  357 (422)
Q Consensus       307 ----~v-~~----------~~~~~~~~g~r~~g~~~~~s~-~~~~~K~~~a~~~~i~g~~l~~~Gy~  357 (422)
                          ++ .+          ....++..++|.+++  ..+. .++..++|+.+++.+.|++++..||.
T Consensus       310 ~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~at--~~~~~~~~~~~lg~~~~~~l~G~l~~~~G~~  374 (396)
T TIGR00882       310 VVILKMLHAFEVPFLLVGCFKYITSQFDVRLSAT--IYLIGFQFAKQLAMIFLSTLAGNMYDSIGFQ  374 (396)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCcceEEE--eehHHHHHHHHHHHHHHHHhHHHHHHhcccH
Confidence                00 01          111344556777777  7766 68999999999999999999998884

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=99.77  E-value=6.3e-16  Score=154.38  Aligned_cols=215  Identities=12%  Similarity=0.003  Sum_probs=147.2

Q ss_pred             HHHHHHHHHHHHhCCChhHHHHHHHHHHHHhhhhhhhhhhhhcccCCchhHHHHHHHHHHHHHHHhhcCccCccccCCcc
Q 014600           42 CWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTST  121 (422)
Q Consensus        42 ~~~~~l~~f~t~~gls~~~~g~i~~i~~l~~ai~~p~~G~lsDr~Grrrp~ll~g~i~~~i~~~~lf~~~~p~~~~~~~~  121 (422)
                      .....++.+.+|.|.++.++|...++..+..++..|+.|+++||+||||. ++.+.+..+++..+.-.       .+  +
T Consensus        38 ~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~-~~~~~~~~~~~~~~~~~-------~~--~  107 (394)
T PRK10213         38 LPVSLLTPMAQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQATDRRYV-VILFAVLLTLSCLLVSF-------AN--S  107 (394)
T ss_pred             HHHhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHH-HHHHHHHHHHHHHHHHH-------HC--h
Confidence            44456777666679999999999999999999999999999999999988 45667777766544321       11  1


Q ss_pred             chhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchHHH
Q 014600          122 LKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQ  201 (422)
Q Consensus       122 ~~~~~~~~~~~~~l~~~~~~~~~~p~~al~~~~t~~~~eR~~l~~~~~~~~~ig~~l~~~~~~~l~~~~~~~g~~~~~~~  201 (422)
                      .+    .+.+.+.+.+++.+.......++.+|+.+ +++|++..+......++|..+++.+++.+.+          ..+
T Consensus       108 ~~----~l~~~r~l~G~~~g~~~~~~~~~i~~~~~-~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~----------~~g  172 (394)
T PRK10213        108 FS----LLLIGRACLGLALGGFWAMSASLTMRLVP-PRTVPKALSVIFGAVSIALVIAAPLGSFLGE----------LIG  172 (394)
T ss_pred             HH----HHHHHHHHHHHhhHHHHHHHHHHHHHHcC-HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------hcC
Confidence            22    22334457788888888888899999986 6789999999888888888887776655443          237


Q ss_pred             HHHHHHHHHHHHHHHHhhhhccccCcccccccCCCcchhhhHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhcc
Q 014600          202 YRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISWAYWFKKILYYQVALVYMLTRLVVNVSQAYLAFYVINDL  281 (422)
Q Consensus       202 ~~~~~~i~~~i~~i~~~i~~~~~~E~~~~~~~~~~~~~~~~~~~~~~n~~f~~~~~~~~~~~~~~~~~~~y~~~y~~~~~  281 (422)
                      |++.+.+.+++++++.+......||++.++     ++..+..++.+|||+++......++.........+|++.++.++.
T Consensus       173 w~~~f~~~~~l~~~~~l~~~~~~p~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~  247 (394)
T PRK10213        173 WRNVFNAAAVMGVLCIFWIIKSLPSLPGEP-----SHQKQNTFRLLQRPGVMAGMIAIFMSFAGQFAFFTYIRPVYMNLA  247 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCCCccc-----ccchhHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            888888877766665555444556643211     111233467789998876555444444444455667644444555


Q ss_pred             Cccch
Q 014600          282 RMGQS  286 (422)
Q Consensus       282 ~l~~~  286 (422)
                      +++..
T Consensus       248 g~s~~  252 (394)
T PRK10213        248 GFGVD  252 (394)
T ss_pred             CCChh
Confidence            66654

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=99.77  E-value=2.3e-17  Score=168.45  Aligned_cols=224  Identities=11%  Similarity=0.003  Sum_probs=146.2

Q ss_pred             HHHHHHHhCCChhHHHHHHHHHHHHhhhhhhhhhhhhcccCCchhHHHHHHHHHHHHHHHhhcCccCccccCCccchhhh
Q 014600           47 LLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVET  126 (422)
Q Consensus        47 l~~f~t~~gls~~~~g~i~~i~~l~~ai~~p~~G~lsDr~Grrrp~ll~g~i~~~i~~~~lf~~~~p~~~~~~~~~~~~~  126 (422)
                      ++....|.|++..+.|++.+...+..++..|+.|+++||+||||. +..+.+..++...++-.  .++..++  +.    
T Consensus        52 ~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~-l~~~~~~~~~~~~~~~~--~~~~~~~--~~----  122 (467)
T PRK09556         52 QNDMISTYGLSTTELGMIGLGFSITYGVGKTLVGYYADGKNTKQF-LPFLLILSAICMLGFGA--SLGSGSV--SL----  122 (467)
T ss_pred             hHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhccCccch-HHHHHHHHHHHHHHHHH--HHhcccc--hH----
Confidence            444445559999999999999999999999999999999999987 44555555544332210  1111111  11    


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhhhhhhccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchHHHHHHHH
Q 014600          127 ISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYRWIA  206 (422)
Q Consensus       127 ~~~~~~~~l~~~~~~~~~~p~~al~~~~t~~~~eR~~l~~~~~~~~~ig~~l~~~~~~~l~~~~~~~g~~~~~~~~~~~~  206 (422)
                      ..+++.+.+.+++.+....+..++++++.+ ++||++..++......+|..+++.+...+.....       ..+|+..+
T Consensus       123 ~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~-~~~rg~a~gi~~~~~~lG~~l~~~i~~~~~~~~~-------~~~~~~~f  194 (467)
T PRK09556        123 GLMIALWALSGFFQSTGGPCSYSTITRWTP-RRKRGRFLGFWNISHNLGGAGAGGVALWGANYFF-------DGHVIGMF  194 (467)
T ss_pred             HHHHHHHHHHHHHHhccchHHHHHHHHHcC-ccceeeeEEeeecccchhhhHHHHHHHHHHHhhc-------cCcchhHH
Confidence            122333446777777777778889999986 6789999999888888888887765544333210       01466666


Q ss_pred             HHHHHHHHHHHhhhhccccCccccc-----------c--cCC----C--cchhhhH-HHHHHhHHHHHHHHHHHHHHHHH
Q 014600          207 YSSIFIGCCFVGIFLSRTEEPRLKM-----------G--LRG----N--SHARISW-AYWFKKILYYQVALVYMLTRLVV  266 (422)
Q Consensus       207 ~i~~~i~~i~~~i~~~~~~E~~~~~-----------~--~~~----~--~~~~~~~-~~~~~n~~f~~~~~~~~~~~~~~  266 (422)
                      .+.++++++..++.++..+|+++++           +  +++    +  .+.++.+ +..+|||.++...+.+++.....
T Consensus       195 ~~~g~~~~~~~i~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  274 (467)
T PRK09556        195 IFPSIIALIIGFIGLRYGSDSPEELGWGKAEEIFGEPISEEDKETESTDMTKWQIFVEYVLKNPVIWLLCFANIFLYIVR  274 (467)
T ss_pred             HHHHHHHHHHHHHHHHhCCCChhhcCCCChhhcccCccchhhhccccccCcHHHHHHHHHHcChHHHHHHHHHHHHHHHH
Confidence            6666666665555566655543210           0  000    0  0111222 34789999888777777776666


Q ss_pred             HhhhHHHHHHhhhccCccchh
Q 014600          267 NVSQAYLAFYVINDLRMGQSA  287 (422)
Q Consensus       267 ~~~~~y~~~y~~~~~~l~~~~  287 (422)
                      .+...|.|.|+.+..+++...
T Consensus       275 ~~~~~~~p~yl~~~~g~s~~~  295 (467)
T PRK09556        275 IGIDNWSPVYAFQELGFSKED  295 (467)
T ss_pred             HHHHHHHHHHHHHccCCCHHH
Confidence            778889999999888876543

>TIGR00897 2A0118 polyol permease family

Probab=99.76  E-value=1.3e-15  Score=152.38  Aligned_cols=312  Identities=13%  Similarity=0.061  Sum_probs=185.8

Q ss_pred             CCCCceee-eeeeccchhHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHhhhhhhhhhhhhcccCCchhHHHHHH
Q 014600           19 QPVGRWSV-LYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGS   97 (422)
Q Consensus        19 ~~l~~~~~-~~y~~g~~~~~~~~~~~~~~l~~f~t~~gls~~~~g~i~~i~~l~~ai~~p~~G~lsDr~Grrrp~ll~g~   97 (422)
                      +|.++++. ....++.+...........+++.+.+|.|.++.++|++.+...+...+..|+.|+++||+||||.+ ..+.
T Consensus         7 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l-~~~~   85 (402)
T TIGR00897         7 QKIGIPLNLLWGYIGVVVFMTGDGLEQGWLSPFLKALGLSPQQSASAFTLYGIAAAISAWISGVVAEIIGPLKTM-MIGL   85 (402)
T ss_pred             HHcCCCchhhHHHHHHHHHHHhhhhHHHhHHHHHHHhCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHH-HHHH
Confidence            34555544 334455566666666777888898877899999999999999999999999999999999999984 4566


Q ss_pred             HHHHHHHHHh-hcCccCccccCCccchhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCccchhhHHHHHHHHHHHHH
Q 014600           98 VLVAVSFSSV-FGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVAN  176 (422)
Q Consensus        98 i~~~i~~~~l-f~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~al~~~~t~~~~eR~~l~~~~~~~~~ig~  176 (422)
                      ...+++..+. +.     ... ..+ .+.   ..+.+.+.+++.+....+..+...+..+ ++||++.++..+...++|.
T Consensus        86 ~~~~~~~~~~~~~-----~~~-~~~-~~~---l~~~~~i~G~g~~~~~~~~~~~~~~~~~-~~~~g~~~g~~~~~~~~g~  154 (402)
T TIGR00897        86 LLWCVGHAAFIVF-----GLG-HAN-YPL---ILLFYGIRGLGYPLFAYSFLVWVVYNTK-QDNLSSAVGWFWAVYSIGI  154 (402)
T ss_pred             HHHHHHHHHHHHH-----hcc-Ccc-HHH---HHHHHHHHHcchHHHHhHHHHHHHHhCC-HHHHHHHHHHHHHHHHHHH
Confidence            6666654322 11     000 111 111   1222345667776665566677777765 6889999999888888775


Q ss_pred             -HHHHHHHHHHHhhccCCCCCchHHHHHHHHHHHHHHHHHHHhhhhccccCcccccccC--CC-cchhhhHHHHHHhHHH
Q 014600          177 -LSLYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLR--GN-SHARISWAYWFKKILY  252 (422)
Q Consensus       177 -~l~~~~~~~l~~~~~~~g~~~~~~~~~~~~~i~~~i~~i~~~i~~~~~~E~~~~~~~~--~~-~~~~~~~~~~~~n~~f  252 (422)
                       ++++.++..+.+..+     .....|+..+.+  .   +..++.++..||++++++++  ++ .+.++.++.++|||++
T Consensus       155 ~~~g~~~~~~l~~~~g-----~~~~~~~~~~~~--~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  224 (402)
T TIGR00897       155 GVFGSYYSSYAIPAFG-----EMNTLWSALAFV--L---TGGVIALFSNKDIFTPQHMQTREKFSELGKAATILFTNPNV  224 (402)
T ss_pred             HHHHHHHHHhcccccc-----hHHHHHHHHHHH--H---HHHHHHHhccCCCCCcccccCCcchhhHHHHHHHHHcChhH
Confidence             445544333332211     111224433322  1   22223333445432221111  11 1223456778999998


Q ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHhhhccCccchhHh---HHHHHH---------------------HHHH---H-----
Q 014600          253 YQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKA---LVPAII---------------------YICS---F-----  300 (422)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~~y~~~y~~~~~~l~~~~~~---~iP~~~---------------------~~~~---~-----  300 (422)
                      +...+.+++......+..+|.|.|+.+ .+++.....   ..+.+.                     ...+   .     
T Consensus       225 ~~~~~~~~~~~~~~~~~~~~~p~~~~~-~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~l~~~~~~~  303 (402)
T TIGR00897       225 LLGGMVRIINTIGLFGFAVFLPMFVAE-LGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMNTVRWFGGVGCGIFTL  303 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHH
Confidence            877666666666667778899988865 566554311   000000                     0000   0     


Q ss_pred             HHHHHH-----H---------HHHhh---------hhhhhhcCccccccceehhhHHHHHHHHHHHHHHHHHhHhhCCC
Q 014600          301 IVSILL-----Q---------VTGIS---------MQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQSMSPT  356 (422)
Q Consensus       301 ~~~~~~-----~---------v~~~~---------~~~~~~g~r~~g~~~~~s~~~~~~K~~~a~~~~i~g~~l~~~Gy  356 (422)
                      .+....     +         +.+..         ...+ ..+++.|.  .+|..++...+++.+++.+.|.+++..|+
T Consensus       304 ~l~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~-~~~~~~g~--~~g~~~~~~~lg~~~gp~i~g~l~~~~g~  379 (402)
T TIGR00897       304 ALYYIPQHFGHSFAVALIIAIALGIFLAGYVPLAAVFPT-LAPKHKGA--AMSVLNLSAGLSAFLAPAIAVLFIGFFGA  379 (402)
T ss_pred             HHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHh-hCcchhHH--HHHHHHHHHHHHHHHHHHHHHHHHhhcch
Confidence            000000     0         00100         1111 34556777  99999999999999999999999988775

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=99.76  E-value=1.8e-15  Score=151.48  Aligned_cols=231  Identities=11%  Similarity=0.070  Sum_probs=148.6

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHhhhhhhhhhhhhcccCCchhHHHHHHHHHHHHHHHhhcCc
Q 014600           32 GHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGC  111 (422)
Q Consensus        32 g~~~~~~~~~~~~~~l~~f~t~~gls~~~~g~i~~i~~l~~ai~~p~~G~lsDr~Grrrp~ll~g~i~~~i~~~~lf~~~  111 (422)
                      +.+..........+.++.+..|.|.++.++++......+...+..|+.|+++||+||||. ++.+....+++..+...  
T Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~-l~~~~~~~~~~~~~~~~--   97 (406)
T PRK15402         21 FEFATYIANDMIQPGMLAVVEDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPV-MLAGVAFFILTCLAILL--   97 (406)
T ss_pred             HHHHHHhhhhhHhcchHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHH-HHHHHHHHHHHHHHHHH--
Confidence            333333344444555565555569999999999999999999999999999999999887 55676676666554332  


Q ss_pred             cCccccCCccchhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 014600          112 MPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVST  191 (422)
Q Consensus       112 ~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~al~~~~t~~~~eR~~l~~~~~~~~~ig~~l~~~~~~~l~~~~~  191 (422)
                           .+  +.+ .   ..+...+.+++.+.......+.+.|..+ +++|.+..+.......++..+++.++..+.+   
T Consensus        98 -----~~--~~~-~---l~~~~~l~G~~~~~~~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~---  162 (406)
T PRK15402         98 -----AQ--SIE-Q---FTLLRFLQGIGLCFIGAVGYAAIQESFE-EADAIKITALMANVALLAPLLGPLVGAALIH---  162 (406)
T ss_pred             -----Hc--cHH-H---HHHHHHHHHhHhhhHHHHHHHHHHHHhC-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence                 11  111 1   1222345666666665566777888875 5678887777666666666666555443332   


Q ss_pred             CCCCCchHHHHHHHHHHHHHHHHHHHhhhhccccCcccccccC-CCcchhhhHHHHHHhHHHHHHHHHHHHHHHHHHhhh
Q 014600          192 AKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLR-GNSHARISWAYWFKKILYYQVALVYMLTRLVVNVSQ  270 (422)
Q Consensus       192 ~~g~~~~~~~~~~~~~i~~~i~~i~~~i~~~~~~E~~~~~~~~-~~~~~~~~~~~~~~n~~f~~~~~~~~~~~~~~~~~~  270 (422)
                             ..+|++.+++.+++.++..+..++..||++.+++++ +..+..+.++.++|||+++...+...+.........
T Consensus       163 -------~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (406)
T PRK15402        163 -------VLPWRGMFVLFAALAALSFFGLWRAMPETAGRVGEKLSLKELGRDYKLVLKNRRFVAGALALGLVSLPLLAWI  235 (406)
T ss_pred             -------ccCccHHHHHHHHHHHHHHHHHHHhCCCCCccccccccHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHH
Confidence                   236888888777777666655555667654322111 112345667888999998776655555444444555


Q ss_pred             HHHHHHhhhccCccchh
Q 014600          271 AYLAFYVINDLRMGQSA  287 (422)
Q Consensus       271 ~y~~~y~~~~~~l~~~~  287 (422)
                      .+.|.|+.+..++++..
T Consensus       236 ~~~p~~~~~~~g~~~~~  252 (406)
T PRK15402        236 ALSPVILISGEQLSSYE  252 (406)
T ss_pred             HHhHHHHHHHhCCCHHH
Confidence            66788887777776543

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=99.75  E-value=1.5e-15  Score=156.31  Aligned_cols=301  Identities=10%  Similarity=0.014  Sum_probs=199.0

Q ss_pred             eeeeccchhHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHhhhhhhhhhhhhcccCCchhHHHHHHHHHHHHHHH
Q 014600           27 LYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSS  106 (422)
Q Consensus        27 ~~y~~g~~~~~~~~~~~~~~l~~f~t~~gls~~~~g~i~~i~~l~~ai~~p~~G~lsDr~Grrrp~ll~g~i~~~i~~~~  106 (422)
                      ..-.++.+...+...+++.-+|....|.|.+..+.+++...+.+..++..|+.|+++||+||||. ++.+....+++...
T Consensus         9 ~~~~~~~~~~~ld~tiv~~a~p~i~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~-l~~~~~~~~~~~~~   87 (495)
T PRK14995          9 VIIVLVYIPVAIDATVLHVAAPTLSMTLGASGNELLWIIDIYSLVMAGMVLPMGALGDRIGFKRL-LMLGGTLFGLASLA   87 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHH-HHHHHHHHHHHHHH
Confidence            33445556666777777777888877779999999999999999999999999999999999888 55677777776554


Q ss_pred             hhcCccCccccCCccchhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCccchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 014600          107 VFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIV  186 (422)
Q Consensus       107 lf~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~al~~~~t~~~~eR~~l~~~~~~~~~ig~~l~~~~~~~l  186 (422)
                      ...       ++  +.+    .+++.+.+.+++.+.......+.+.+...+++||++..++......+|..+++.+++.+
T Consensus        88 ~~~-------a~--~~~----~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l  154 (495)
T PRK14995         88 AAF-------SP--TAS----WLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGIL  154 (495)
T ss_pred             HHH-------cC--CHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            331       11  122    12233456777777766666666767665678999999999988899988888776655


Q ss_pred             HhhccCCCCCchHHHHHHHHHHHHHHHHHHHhhhhccccCcccccccCCCc----------------------chhh---
Q 014600          187 FSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNS----------------------HARI---  241 (422)
Q Consensus       187 ~~~~~~~g~~~~~~~~~~~~~i~~~i~~i~~~i~~~~~~E~~~~~~~~~~~----------------------~~~~---  241 (422)
                      .+          ..+|||.+++...++++..++..+..||++.+++++.+.                      +...   
T Consensus       155 ~~----------~~gwr~~f~i~~~~~~~~~~l~~~~l~~~~~~~~~~~d~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~  224 (495)
T PRK14995        155 LE----------HFYWGSVFLINVPIVLVVMGLTARYVPRQAGRRDQPLNLGHALMLIVAILLLVYSAKTALKGFLSLWV  224 (495)
T ss_pred             hc----------cCChHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCChHhHHHHHHHHHHHHHHHHhccccCCchHH
Confidence            43          238999999888888777777777777754321111000                      0000   


Q ss_pred             ------------------hH--------HHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhccCccchhHh--HHHH
Q 014600          242 ------------------SW--------AYWFKKILYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKA--LVPA  293 (422)
Q Consensus       242 ------------------~~--------~~~~~n~~f~~~~~~~~~~~~~~~~~~~y~~~y~~~~~~l~~~~~~--~iP~  293 (422)
                                        ..        .+++|||.+....+..++......+...|+|.|+++..+.++...+  ..|.
T Consensus       225 ~~~~~~~~~~~l~~f~~~e~~~~~p~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lq~v~g~s~~~ag~~~~~~  304 (495)
T PRK14995        225 TSLTLLTGALLLGLFIRTQLAASRPMIDMRLFTHRIILSGVVMAMTAMITLVGFELLMAQELQFVHGLSPLEAGMFMLPV  304 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCCCcCHHHhCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence                              00        2567788776665556665566667778999999988887765432  1111


Q ss_pred             HH---------------------HHHHHHHHH-------HHH-------------HHHhh----------hhhhhhcCcc
Q 014600          294 II---------------------YICSFIVSI-------LLQ-------------VTGIS----------MQNVLVGEDL  322 (422)
Q Consensus       294 ~~---------------------~~~~~~~~~-------~~~-------------v~~~~----------~~~~~~g~r~  322 (422)
                      ..                     ...+.++..       ...             +.+.+          .......+++
T Consensus       305 ~~~~~~~~~~~g~l~~r~g~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~~~~~~  384 (495)
T PRK14995        305 MVASGFSGPIAGILVSRLGLRLVATGGMALSALSFYGLAMTDFSTQQWQAWGLMALLGFSAASALLASTSAIMAAAPPEK  384 (495)
T ss_pred             HHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCHHh
Confidence            00                     011111100       000             01111          1122345667


Q ss_pred             ccccceehhhHHHHHHHHHHHHHHHHHhHhh
Q 014600          323 SGCAFVCGTLSFLDKMSCGIAVYVLQSYQSM  353 (422)
Q Consensus       323 ~g~~~~~s~~~~~~K~~~a~~~~i~g~~l~~  353 (422)
                      .|.  ..+..++.+++|.++|.++.|.+++.
T Consensus       385 ~g~--~~~~~~~~~~lG~~~G~ai~g~i~~~  413 (495)
T PRK14995        385 AAA--AGAIETMAYELGAGLGIAIFGLLLSR  413 (495)
T ss_pred             cch--HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            777  88999999999999999999999874

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=99.75  E-value=4.8e-16  Score=153.70  Aligned_cols=225  Identities=12%  Similarity=0.036  Sum_probs=158.8

Q ss_pred             HHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHhhhhhhhhhhhhcccCCchhHHHHHHHHHHHHHHHhhcCccCcccc
Q 014600           38 ITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRIL  117 (422)
Q Consensus        38 ~~~~~~~~~l~~f~t~~gls~~~~g~i~~i~~l~~ai~~p~~G~lsDr~Grrrp~ll~g~i~~~i~~~~lf~~~~p~~~~  117 (422)
                      .......+.+|.+..+.|.+..++|++.++..+...+..|+.|+++||+||||. +..+.++.+++...+..       .
T Consensus        19 ~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~-~~~~~~~~~~~~~~~~~-------~   90 (385)
T TIGR00710        19 LGIDMYLPAFPEIAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPV-LLLGLFIFALSSLGLAL-------S   90 (385)
T ss_pred             HHHHHhcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHH-HHHHHHHHHHHHHHHHH-------H
Confidence            333444455565555669999999999999999999999999999999999877 55677777766654431       1


Q ss_pred             CCccchhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCc
Q 014600          118 STSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHAD  197 (422)
Q Consensus       118 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~al~~~~t~~~~eR~~l~~~~~~~~~ig~~l~~~~~~~l~~~~~~~g~~~  197 (422)
                      +  +.+    .+.+..++.+++.+....+..++..|..+ +++|++..+..+....+|..+++.+++.+.+         
T Consensus        91 ~--~~~----~~~~~~~l~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~---------  154 (385)
T TIGR00710        91 N--NIE----TLLVLRFVQAFGASAGSVISQALVRDIYP-GEELSRIYSILMPVLALAPAVAPLLGGYILV---------  154 (385)
T ss_pred             c--cHH----HHHHHHHHHHcchhHHHHHHHHHHHHhcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------
Confidence            1  112    12233456778888888889999999986 6789999999988888888888776655443         


Q ss_pred             hHHHHHHHHHHHHHHHHHHHhhhhccccCcccccccCCCcchhhhHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHh
Q 014600          198 LENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISWAYWFKKILYYQVALVYMLTRLVVNVSQAYLAFYV  277 (422)
Q Consensus       198 ~~~~~~~~~~i~~~i~~i~~~i~~~~~~E~~~~~~~~~~~~~~~~~~~~~~n~~f~~~~~~~~~~~~~~~~~~~y~~~y~  277 (422)
                       ..+|++.+.+.+++.++..++.++..||++.+++++++.+..+.+++.+|||+++...+.+.+..........+.|.|+
T Consensus       155 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (385)
T TIGR00710       155 -WLSWHAIFAFLSLAGILLSALIFFILPETLPYEARIQISTYFETFLLLLKSKMFWGYALIYGASFGGFFAFFSGAPFVY  233 (385)
T ss_pred             -HcCHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcccCCHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHcChHHH
Confidence             2378888877777777666666666777543322222223345667889999988766666555555566677888888


Q ss_pred             hhccCccchh
Q 014600          278 INDLRMGQSA  287 (422)
Q Consensus       278 ~~~~~l~~~~  287 (422)
                      .+..+.++..
T Consensus       234 ~~~~g~~~~~  243 (385)
T TIGR00710       234 IDIMGVSPSV  243 (385)
T ss_pred             HHHcCCCHHH
Confidence            8777766543

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.74  E-value=1.9e-15  Score=150.79  Aligned_cols=304  Identities=12%  Similarity=0.021  Sum_probs=178.4

Q ss_pred             eeeeeeccchhHHHHHHHHHHHHHHHHHHh-CCChhHHHHHHHHHHHHhhhhhhhhhhhhcccCCchhHHHHHHHHHHHH
Q 014600           25 SVLYYGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVS  103 (422)
Q Consensus        25 ~~~~y~~g~~~~~~~~~~~~~~l~~f~t~~-gls~~~~g~i~~i~~l~~ai~~p~~G~lsDr~Grrrp~ll~g~i~~~i~  103 (422)
                      +........+...+...+...+++.+..+. |.|+.++|++.++..+..++.+|+.|+++||+||||. ++.+....+++
T Consensus        16 ~~~~l~~~~~~~~~~~~~~~~~l~~~i~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~-l~~~~~~~~~~   94 (399)
T PRK05122         16 RIVSIVMFTFISYLTIGLPLAVLPGYVHDQLGFSAFLAGLVISLQYLATLLSRPHAGRYADTLGPKKA-VVFGLCGCALS   94 (399)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHhchhhHhHHhccCCcch-HHHHHHHHHHH
Confidence            345566666777777788888999888776 9999999999999999999999999999999999998 45566665554


Q ss_pred             HHHhhcCccCccccCCccchhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCccchhhHHHHHHHHHHHHHHHHHHHH
Q 014600          104 FSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIA  183 (422)
Q Consensus       104 ~~~lf~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~al~~~~t~~~~eR~~l~~~~~~~~~ig~~l~~~~~  183 (422)
                      ...+..  ..  +.++. ..+.+..+++.+.+.+++.+.......++..+..+ ++||++..++......+|.++++.++
T Consensus        95 ~~~~~~--~~--~~~~~-~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~-~~~r~~~~~~~~~~~~~g~~~g~~l~  168 (399)
T PRK05122         95 GLLYLL--AG--LLAAW-PVLSLLLLLLGRLLLGIGESLAGTGSILWGIGRVG-ALHTGRVISWNGIATYGALAIGAPLG  168 (399)
T ss_pred             HHHHHH--hh--hhhcc-chhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcC-hhhhccchhhhhhhhhHHHHHHHHHH
Confidence            333221  00  01110 11111223334457888888888888888888875 68899999988877788877777666


Q ss_pred             HHHHhhccCCCCCchHHHHHHHHHHHHHHHHHHHhhhhccccCcccccccCCCcchhhhHHHHHHhHHHHHHHHHHHHHH
Q 014600          184 FIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISWAYWFKKILYYQVALVYMLTR  263 (422)
Q Consensus       184 ~~l~~~~~~~g~~~~~~~~~~~~~i~~~i~~i~~~i~~~~~~E~~~~~~~~~~~~~~~~~~~~~~n~~f~~~~~~~~~~~  263 (422)
                      ..+...          .+|++.+.+..++.++..+.. ...+|++.  +++++    .++++.+|+  .+.......+..
T Consensus       169 ~~l~~~----------~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~--~~~~~----~~~~~~~~~--~~~~~~~~~~~~  229 (399)
T PRK05122        169 VLLYHW----------GGLAGLGLLIMLLALLGLLLA-RPRPAVPP--VKGER----LPFRRVLGR--VWPYGMGLALAS  229 (399)
T ss_pred             HHHHHc----------ccHHHHHHHHHHHHHHHHHHH-hcCCCCCC--CCccc----hhHHHHHHH--HHHHHHHHHHHH
Confidence            554432          367777665555444332222 21222111  11111    223333332  122222222333


Q ss_pred             HHHHhhhHHHHHHhhhccCccchhH-------hHH---HHHH-----------HHH-------HHHHHHHHH--------
Q 014600          264 LVVNVSQAYLAFYVINDLRMGQSAK-------ALV---PAII-----------YIC-------SFIVSILLQ--------  307 (422)
Q Consensus       264 ~~~~~~~~y~~~y~~~~~~l~~~~~-------~~i---P~~~-----------~~~-------~~~~~~~~~--------  307 (422)
                      .+......+.+.|..+. +......       +.+   +...           ...       +.......+        
T Consensus       230 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  308 (399)
T PRK05122        230 IGFGTIATFITLYYAAR-GWDGAALALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLWLAPSPWMALIG  308 (399)
T ss_pred             HHHHHHHHHHHHHHHHc-ccccchHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence            44445566777776643 3322110       000   0000           000       000000000        


Q ss_pred             --HHH-------hhh---hhhhhcCccccccceehhhHHHHHHHHHHHHHHHHHhHhhCCCc
Q 014600          308 --VTG-------ISM---QNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQSMSPTV  357 (422)
Q Consensus       308 --v~~-------~~~---~~~~~g~r~~g~~~~~s~~~~~~K~~~a~~~~i~g~~l~~~Gy~  357 (422)
                        +.+       ..+   ..+...+++.|.  .+|.++...++|.++++.+.|++.+..||+
T Consensus       309 ~~l~G~~~~~~~~~~~~~~~~~~~~~~~g~--~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~  368 (399)
T PRK05122        309 AALTGFGFSLVFPALGVEAVKRVPPQNRGA--ALGAYSVFLDLSLGITGPLAGLVASWFGYP  368 (399)
T ss_pred             HHHHHHhHHHHHHHHHHHHHHhCCHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHcCHH
Confidence              001       111   123456677788  999999999999999999999998877653

>PRK10054 putative transporter; Provisional

Probab=99.74  E-value=1.8e-15  Score=151.22  Aligned_cols=224  Identities=11%  Similarity=0.051  Sum_probs=148.4

Q ss_pred             eeeeccchhHHHHHHHHHHHHHHHHHHh-CCChhHHHHHHHHHHHHhhhhhhhhhhhhcccCCchhHHHHHHHHHHHHHH
Q 014600           27 LYYGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFS  105 (422)
Q Consensus        27 ~~y~~g~~~~~~~~~~~~~~l~~f~t~~-gls~~~~g~i~~i~~l~~ai~~p~~G~lsDr~Grrrp~ll~g~i~~~i~~~  105 (422)
                      .......+.....+....++++.|+++. |+++.++|++.++..+...+..|+.|+++||+||||. ++.+.+..+++..
T Consensus        10 ~~l~~~~~~~~~g~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~-~~~~~~~~~~~~~   88 (395)
T PRK10054         10 SALLASSLLLTIGRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRY-MLLAITAFASGFI   88 (395)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchh-HHHHHHHHHHHHH
Confidence            4444566777777778888999999886 9999999999999999999999999999999999877 5566666666654


Q ss_pred             HhhcCccCccccCCccchhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCccchhhHHHHHHHHHHHHHHHHHHHHHH
Q 014600          106 SVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFI  185 (422)
Q Consensus       106 ~lf~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~al~~~~t~~~~eR~~l~~~~~~~~~ig~~l~~~~~~~  185 (422)
                      ++..       .+  +.+ .   .++...+.+.+.+.......++.+|..+ +++|++..++.+...++|..+++.+++.
T Consensus        89 ~~~~-------~~--~~~-~---~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~lg~~igp~l~~~  154 (395)
T PRK10054         89 AIPL-------VN--NVT-L---VVLFFALINCAYSVFSTVLKAWFADNLS-STSKTKIFSLNYTMLNIGWTVGPPLGTL  154 (395)
T ss_pred             HHHH-------Hh--HHH-H---HHHHHHHHHHHHHHHHHHHHHHHHHhcC-HhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3321       11  111 1   1111223455555555667788888875 6789999999888889988888776654


Q ss_pred             HHhhccCCCCCchHHHHHHHHHHHHHHHHHHHhhhhccccCcccccccCCCcchhhhHHHHHHhHHHHHHHHHHHHHHHH
Q 014600          186 VFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISWAYWFKKILYYQVALVYMLTRLV  265 (422)
Q Consensus       186 l~~~~~~~g~~~~~~~~~~~~~i~~~i~~i~~~i~~~~~~E~~~~~~~~~~~~~~~~~~~~~~n~~f~~~~~~~~~~~~~  265 (422)
                      +..           .+|+..+.+.+++.++..++..+.++|++.+++ +++++ ....++.+|||+++...+..++....
T Consensus       155 l~~-----------~g~~~~f~~~~~~~~i~~i~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~  221 (395)
T PRK10054        155 LVM-----------QSINLPFWLAAICSAFPLVFIQIWVQRSEKAIA-TETGS-VWSPSVLLQDKALLWFTCSGFLASFV  221 (395)
T ss_pred             HHH-----------hccCcHHHHHHHHHHHHHHHHHHHHhccccccc-cchhh-hhhhhhhccCceehHHHHHHHHHHHH
Confidence            432           256666666666665554444454554432221 11111 12236788999987776666665555


Q ss_pred             HHhhhHHHHHHhh
Q 014600          266 VNVSQAYLAFYVI  278 (422)
Q Consensus       266 ~~~~~~y~~~y~~  278 (422)
                      ......+.+.|..
T Consensus       222 ~~~~~~~~~~~~~  234 (395)
T PRK10054        222 SGAFASCISQYVM  234 (395)
T ss_pred             HHHhhhhHHHHHH
Confidence            4444445566654

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=99.74  E-value=3.2e-16  Score=151.32  Aligned_cols=279  Identities=15%  Similarity=0.085  Sum_probs=197.9

Q ss_pred             CCChhHHHHHHHHHHHHhhhhhhhhhhhhcccCCchhHHHHHHHHHHHHHHHhhcCccCccccCCccchhhhHHHHHHHH
Q 014600           55 GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVETISYCVFAA  134 (422)
Q Consensus        55 gls~~~~g~i~~i~~l~~ai~~p~~G~lsDr~Grrrp~ll~g~i~~~i~~~~lf~~~~p~~~~~~~~~~~~~~~~~~~~~  134 (422)
                      |+|.++.|.+.+...+...++.-++|.++||.+.|+- +-.|.++.++..+++=       +++  +..    .+.++..
T Consensus        60 ~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~f-m~~gLilsai~nil~G-------fs~--s~~----~~~~l~~  125 (448)
T COG2271          60 GLSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRYF-MAFGLILSAIVNILFG-------FSP--SLF----LFAVLWV  125 (448)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCcee-ehHHHHHHHHHHHHHh-------hhh--HHH----HHHHHHH
Confidence            6999999999999999999999999999999998776 7788888888775532       121  222    2222233


Q ss_pred             HHHHHHHHHHhhhhhhhhhccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchHHHHHHHHHHHHHHHH
Q 014600          135 IFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGC  214 (422)
Q Consensus       135 l~~~~~~~~~~p~~al~~~~t~~~~eR~~l~~~~~~~~~ig~~l~~~~~~~l~~~~~~~g~~~~~~~~~~~~~i~~~i~~  214 (422)
                      +-+...+.-..|....+..+.+ ++||++.-++.+...++|+.+.+.+...  ..+.      ...+|+..+++-+++++
T Consensus       126 lng~fQg~Gwpp~~~~i~~Wfs-r~eRG~~~siWn~shNiGGal~~~~~~l--a~~~------~~~~w~~~f~~pgiiai  196 (448)
T COG2271         126 LNGWFQGMGWPPCARTITHWFS-RKERGTWWSIWNTSHNIGGALAPLVALL--AFFA------FHGGWRAAFYFPGIIAI  196 (448)
T ss_pred             HHHHHhcCCCcHHHHHHHHHcC-ccccCceEEEehhhhhcccchHHHHHHH--HHHH------hccchhHHHHHHHHHHH
Confidence            5666777777888899999987 6899999999999999998776654421  2221      12378999999999999


Q ss_pred             HHHhhhhccccCccccc----------c--c---CCCcc----hhh-hHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHH
Q 014600          215 CFVGIFLSRTEEPRLKM----------G--L---RGNSH----ARI-SWAYWFKKILYYQVALVYMLTRLVVNVSQAYLA  274 (422)
Q Consensus       215 i~~~i~~~~~~E~~~~~----------~--~---~~~~~----~~~-~~~~~~~n~~f~~~~~~~~~~~~~~~~~~~y~~  274 (422)
                      +..+++++..||+|++.          +  |   +++++    .++ -++.++|||..|.+.+.+++......++..+-|
T Consensus       197 ival~~~~~~rd~Pqs~GLP~ie~~~~d~~e~~~~~~~~~~ls~~~i~~~YVL~Nk~iW~la~a~vfvYivR~gi~dW~p  276 (448)
T COG2271         197 IVALILLFLLRDRPQSEGLPPIEEYRGDPLEIYEEEKENEGLTAWQIFVKYVLKNKLIWLLALANVFVYVVRYGINDWGP  276 (448)
T ss_pred             HHHHHHHHHhCCCccccCCCCHHHhhcCchhhhhhhccCCCccHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHhhhHH
Confidence            99999999999987431          0  0   11111    122 356789999999999999999999999999999


Q ss_pred             HHhhhccCccchhH---------hHHHHHH--------------------HHHHHHHHHHHH------------------
Q 014600          275 FYVINDLRMGQSAK---------ALVPAII--------------------YICSFIVSILLQ------------------  307 (422)
Q Consensus       275 ~y~~~~~~l~~~~~---------~~iP~~~--------------------~~~~~~~~~~~~------------------  307 (422)
                      .|+.|.++++....         +.+|..+                    +.++..+++..-                  
T Consensus       277 ~YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~~~i~~~~i~~~~~~~w~~~~~~~~l~~~~l~~i  356 (448)
T COG2271         277 LYLSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGRRGPMALIFMLLITASLVLYWLAPNGSYLLDAILLFII  356 (448)
T ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHH
Confidence            99999988875432         2233211                    111111111100                  


Q ss_pred             ---HHHhhh-----hhhhhcCccccccceehhhHHHHHH-HHHHHHHHHHHhHhhCCCcc
Q 014600          308 ---VTGISM-----QNVLVGEDLSGCAFVCGTLSFLDKM-SCGIAVYVLQSYQSMSPTVL  358 (422)
Q Consensus       308 ---v~~~~~-----~~~~~g~r~~g~~~~~s~~~~~~K~-~~a~~~~i~g~~l~~~Gy~~  358 (422)
                         +.|+.|     ..+..-++..|+  ..|...++.=+ |.+++....|++.+..|.+.
T Consensus       357 Gf~IyGPqmLiGl~a~e~~pK~AaGt--A~Gf~Glf~Yl~Ga~~a~~~~g~i~d~~gW~g  414 (448)
T COG2271         357 GFLIYGPQMLIGLAAAEFVPKKAAGT--ATGFVGLFAYLIGAALAGLPLGYIADTWGWDG  414 (448)
T ss_pred             HHHHhhHHHHHHHHHhccccHhhccc--hhchhhhHHHHhhHHhcCCcceeeEecCCCcc
Confidence               112333     234556778888  88988888888 88888888888877767654

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=99.74  E-value=3.6e-16  Score=152.34  Aligned_cols=226  Identities=17%  Similarity=0.152  Sum_probs=154.3

Q ss_pred             hhHHHHHHHHHHHHHHHHHHh-CCChhHHHHHHHHHHHHhhhhhhhhhhhhcccCCchhHHHHHHHHHHHHHHHhhcCcc
Q 014600           34 MLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCM  112 (422)
Q Consensus        34 ~~~~~~~~~~~~~l~~f~t~~-gls~~~~g~i~~i~~l~~ai~~p~~G~lsDr~Grrrp~ll~g~i~~~i~~~~lf~~~~  112 (422)
                      +...+........++.++.+. |.++.++|++.++..+...+..|+.|+++||+||||. ++.+.+..+++...+..   
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~-l~~~~~~~~~~~~~~~~---   81 (352)
T PF07690_consen    6 FLSGFGFSIISPALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRV-LIIGLLLFALGSLLLAF---   81 (352)
T ss_dssp             HHHHHHHHHHHHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHH-HHHHHHHHHHHHHHHHH---
T ss_pred             HHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeee-EeehhhhhhhHHHHhhh---
Confidence            444555556666666466665 9999999999999999999999999999999999985 77788888887333221   


Q ss_pred             CccccCCccchhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 014600          113 PCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTA  192 (422)
Q Consensus       113 p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~al~~~~t~~~~eR~~l~~~~~~~~~ig~~l~~~~~~~l~~~~~~  192 (422)
                          ++  +.+    .+++..++.+++.+.......+++.|+.++ +||++..+.......+|.++++.++..+.+    
T Consensus        82 ----~~--~~~----~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~----  146 (352)
T PF07690_consen   82 ----AS--NFW----LLLIARFLLGIGSGFFSPASNALIADWFPP-EERGRAFGILSAGFSLGSILGPLLGGFLIS----  146 (352)
T ss_dssp             ----HC--CHH----HHHHHHHHHHHHHHHHHHHHHHHHHHCCCT-CCHHHHHHHHHHHHHHHHHHHHHHHHHCCC----
T ss_pred             ----hh--hHH----HHhhhccccccccccccccccccccccchh-hhhhhccccccchhhhhhhcccchhhhhhh----
Confidence                11  111    233334578888888999999999999874 899999999999999999888766654432    


Q ss_pred             CCCCchHHHHHHHHHHHHHHHHHHHhhhhccccCcccccc-c-CCCc------chhhhHHHHHHhHHHHHHHHHHHHHHH
Q 014600          193 KTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMG-L-RGNS------HARISWAYWFKKILYYQVALVYMLTRL  264 (422)
Q Consensus       193 ~g~~~~~~~~~~~~~i~~~i~~i~~~i~~~~~~E~~~~~~-~-~~~~------~~~~~~~~~~~n~~f~~~~~~~~~~~~  264 (422)
                            ..+|++.+++.+++.++..++.....+|++.+++ + +++.      +.++.++.++++|.++......++...
T Consensus       147 ------~~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  220 (352)
T PF07690_consen  147 ------YFGWRWAFLISAILSLIAAILFILFLPEPPPPRERESPKESESKKPKPLKPGFKSLFKNPVLWILLIAFFLFFF  220 (352)
T ss_dssp             ------HCHHCCHHHHHHHHHHHHHHHHHCCC---STTTT--SSTTTT--HHHCCCH-CTHHHHHHCCHHHHHHHHHHHH
T ss_pred             ------ccccccccccccchhhhhhhhHhhhhhhcccccccccccccccccccccccccccccccchhhhhhhhhhHHHH
Confidence                  3478888888888777776653344444332211 1 1111      112236778888876544444444455


Q ss_pred             HHHhhhHHHHHHhhhccCcc
Q 014600          265 VVNVSQAYLAFYVINDLRMG  284 (422)
Q Consensus       265 ~~~~~~~y~~~y~~~~~~l~  284 (422)
                      .......+.|.|..+..+.+
T Consensus       221 ~~~~~~~~~~~~l~~~~~~~  240 (352)
T PF07690_consen  221 VFSGFSFFLPLYLQEVLGFS  240 (352)
T ss_dssp             HHHHHHHHHHHHCCHHHHCC
T ss_pred             HHHHhhcccchhhhhccCCC
Confidence            66678889999977777777

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=99.74  E-value=2.3e-15  Score=152.43  Aligned_cols=220  Identities=13%  Similarity=0.072  Sum_probs=145.4

Q ss_pred             HHHHHHHhCCChhHHHHHHHHHHHHhhhhhhhhhhhhcccCCchhHHHHHHHHHHHHHHHhhcCccCccccCCccchhhh
Q 014600           47 LLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVET  126 (422)
Q Consensus        47 l~~f~t~~gls~~~~g~i~~i~~l~~ai~~p~~G~lsDr~Grrrp~ll~g~i~~~i~~~~lf~~~~p~~~~~~~~~~~~~  126 (422)
                      ..+++++.|+++.+.|++.++..+...+..|+.|+++||+||||. +..+.+..+++...+..  .|.  . ..+..   
T Consensus        49 ~~p~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~-~~~~~~~~~~~~~~~~~--~~~--~-~~~~~---  119 (438)
T TIGR00712        49 AMPYLVEQGFSKGELGFALSAISIAYGFSKFIMGSVSDRSNPRVF-LPAGLILSAAVMLLMGF--VPW--A-TSSIA---  119 (438)
T ss_pred             hhHHHHHcCCCHhHhHHHHHHHHHHHHHhhhccchhhhccCCcee-hHHHHHHHHHHHHHHhc--ccc--c-cchHH---
Confidence            445666679999999999999999999999999999999999887 55677777776554321  120  0 01111   


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhhhhhhccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchHHHHHHHH
Q 014600          127 ISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYRWIA  206 (422)
Q Consensus       127 ~~~~~~~~l~~~~~~~~~~p~~al~~~~t~~~~eR~~l~~~~~~~~~ig~~l~~~~~~~l~~~~~~~g~~~~~~~~~~~~  206 (422)
                       ...+...+.+++.+....+..+.+.|+.+ ++||++..++.+....+|+.+++.+....+.         ...+|++.+
T Consensus       120 -~l~~~~~l~g~~~g~~~~~~~~~i~~~~~-~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~---------~~~~w~~~f  188 (438)
T TIGR00712       120 -IMFVLLFLNGWFQGMGWPPCGRTMVHWWS-QSERGTIVSIWNCAHNIGGGIPPLLVLLGMA---------WFNDWHAAL  188 (438)
T ss_pred             -HHHHHHHHHHHHhhcchHHHHHHHHHhcC-cccchhHHHHHHHHHHhHhHHHHHHHHHHHH---------HhhhhHHHH
Confidence             11122235666666666677788888875 6789999999888888887776544332222         124799988


Q ss_pred             HHHHHHHHHHHhhhhccccCccccc---c-c---C-------CCc----chhhh-HHHHHHhHHHHHHHHHHHHHHHHHH
Q 014600          207 YSSIFIGCCFVGIFLSRTEEPRLKM---G-L---R-------GNS----HARIS-WAYWFKKILYYQVALVYMLTRLVVN  267 (422)
Q Consensus       207 ~i~~~i~~i~~~i~~~~~~E~~~~~---~-~---~-------~~~----~~~~~-~~~~~~n~~f~~~~~~~~~~~~~~~  267 (422)
                      ++.+++.++..++.++.+||++.++   + +   +       ++.    +.++. .+.++|||.++...+..++......
T Consensus       189 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (438)
T TIGR00712       189 YFPAICAIIVALFAFAMMRDTPQSCGLPPIEEYRNDYPDDYNEKAEQELTAKEIFMQYVLPNKLLWYIAIANVFVYLLRY  268 (438)
T ss_pred             HHHHHHHHHHHHHHHHhccCCHHhcCCCCchhcccccccccccccccccchHHHHHHHHccCchHHHHHHHHHHHHHHHH
Confidence            8887777776666666777754311   0 0   0       000    01111 1246788888776655555555566


Q ss_pred             hhhHHHHHHhhhccCccch
Q 014600          268 VSQAYLAFYVINDLRMGQS  286 (422)
Q Consensus       268 ~~~~y~~~y~~~~~~l~~~  286 (422)
                      +...|.|.|+++..++++.
T Consensus       269 ~~~~~~p~~l~~~~g~s~~  287 (438)
T TIGR00712       269 GVLDWSPTYLKEVKHFALD  287 (438)
T ss_pred             HHHHhHHHHHHHccCCChh
Confidence            7788999999987676553

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=99.74  E-value=3.4e-16  Score=153.95  Aligned_cols=241  Identities=10%  Similarity=0.036  Sum_probs=155.4

Q ss_pred             hhHHHHHHHHHHHHHHHHHHh-CCChhHHHHHHHHHHHHhhhhhhhhhhhhcccCCchhHHHHHHHHHHHHHHHhhcCcc
Q 014600           34 MLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCM  112 (422)
Q Consensus        34 ~~~~~~~~~~~~~l~~f~t~~-gls~~~~g~i~~i~~l~~ai~~p~~G~lsDr~Grrrp~ll~g~i~~~i~~~~lf~~~~  112 (422)
                      +.....+....++++.++++. |+|+.++|++..+..+.+++.+|+.|+++||+||||. ++.+.+..+++..++..   
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~-~~~~~~~~~i~~~~~~~---   86 (366)
T TIGR00886        11 FLSFSVWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYT-TTLSLLLLAIPCLWAGL---   86 (366)
T ss_pred             HHHHHHHHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHH-HHHHHHHHHHHHHHHHH---
Confidence            344455556667777667666 9999999999999999999999999999999999988 55677777777654331   


Q ss_pred             CccccCCccchhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 014600          113 PCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTA  192 (422)
Q Consensus       113 p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~al~~~~t~~~~eR~~l~~~~~~~~~ig~~l~~~~~~~l~~~~~~  192 (422)
                          .+. +.+    .+.+.+++.+++.+. ..+..+++.++.+ ++||++..++......+|..+++.+.+++...+..
T Consensus        87 ----~~~-~~~----~~~~~~~~~g~~~~~-~~~~~~~~~~~~~-~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~  155 (366)
T TIGR00886        87 ----AVQ-SYS----VLLLLRLFIGIAGGS-FASCMPWISFFFP-KKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIF  155 (366)
T ss_pred             ----Hhh-hHH----HHHHHHHHHHHhchh-hHhHHHHHHHhcC-HhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHh
Confidence                110 111    122223455655443 3556788888875 67899999998888888888887777666653211


Q ss_pred             CCCCchHHHHHHHH-HHHHHHHHHHHhhhhccccCcccccccCCCcc-----------hhhhHHHHHHhHHHHHHHHHHH
Q 014600          193 KTHADLENQYRWIA-YSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSH-----------ARISWAYWFKKILYYQVALVYM  260 (422)
Q Consensus       193 ~g~~~~~~~~~~~~-~i~~~i~~i~~~i~~~~~~E~~~~~~~~~~~~-----------~~~~~~~~~~n~~f~~~~~~~~  260 (422)
                      ....+...+|++.+ ...+++..+..++.+...+|++.+++++++.+           ..+..++.+++|+++...+.++
T Consensus       156 ~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (366)
T TIGR00886       156 GAGLPAHLAWGWAFVIVPAGILLLPALLIFFVGADTPPGKPATGKLSFKGARWSVGTGALGDQLKVFRDRHTWILALLYS  235 (366)
T ss_pred             cccccccccccchhHHHHHHHHHHHHHHHHHhcccCCcccccchhcccccccccccchhHHHHHHHHhccchhhHHHHHH
Confidence            00011234788877 44344444444444555555432211111111           0114567888888877666666


Q ss_pred             HHHHHHHhhhHHHHHHhhhccCccchhHh
Q 014600          261 LTRLVVNVSQAYLAFYVINDLRMGQSAKA  289 (422)
Q Consensus       261 ~~~~~~~~~~~y~~~y~~~~~~l~~~~~~  289 (422)
                      +..........+.+.|..+..+.+.....
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  264 (366)
T TIGR00886       236 VTFGSFLGVSSIFAMFFKDQFGLSKVTAG  264 (366)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCcHHHHH
Confidence            65555667788899999888777665443

>TIGR00901 2A0125 AmpG-related permease

Probab=99.74  E-value=7.2e-16  Score=151.44  Aligned_cols=231  Identities=13%  Similarity=0.066  Sum_probs=159.2

Q ss_pred             HHHHHHHHHHHHhCCChhHHHHHHHHHHHHhhhhhhhhhhhhccc-----CCchhHHHHHHHHHHHHHHHhhcCccCccc
Q 014600           42 CWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRF-----GHFKIWHGAGSVLVAVSFSSVFGGCMPCRI  116 (422)
Q Consensus        42 ~~~~~l~~f~t~~gls~~~~g~i~~i~~l~~ai~~p~~G~lsDr~-----Grrrp~ll~g~i~~~i~~~~lf~~~~p~~~  116 (422)
                      ....-++.+.+|.|+|.+++|...++.-.+ ++ .|+.|.++||+     ||||+|++.+.++.++.+..+..  .+   
T Consensus         6 ~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~-~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~--~~---   78 (356)
T TIGR00901         6 LVGNTLPYWLRSKNVSLKTIGFFSLVGLPY-SL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSF--LV---   78 (356)
T ss_pred             hHHhHHHHHHHHcCCCHHHHHHHHHHHHHH-HH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHc--CC---
Confidence            344456777777799999999997664333 44 99999999996     99999988888888877554432  11   


Q ss_pred             cCCccchhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCC
Q 014600          117 LSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHA  196 (422)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~al~~~~t~~~~eR~~l~~~~~~~~~ig~~l~~~~~~~l~~~~~~~g~~  196 (422)
                       +..+.++    .....++.+.+.+...+++.++++|+++ +|||++.++++..+..+|.++++.++..+....+..  .
T Consensus        79 -~~~~l~~----l~~~~~~~~~~~~~~~~~~~a~~~~~~~-~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~--~  150 (356)
T TIGR00901        79 -PSTDLPL----LAGLAFLIAFFSATQDIALDAWRLEILS-DEELGYGSTIYIVGYRAGMLLSGSLALVLASPEFAN--T  150 (356)
T ss_pred             -cchhHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhCC-HhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhcccc--c
Confidence             1112211    1122235667778889999999999985 689999999999999999998888776665543210  0


Q ss_pred             chHHHHHHHHHHHHHHHHHHHhhhhccccCcccccccC--CCcchhhhHHHHHHhHH---HHHHHHHHHHHHHHHHhhhH
Q 014600          197 DLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLR--GNSHARISWAYWFKKIL---YYQVALVYMLTRLVVNVSQA  271 (422)
Q Consensus       197 ~~~~~~~~~~~i~~~i~~i~~~i~~~~~~E~~~~~~~~--~~~~~~~~~~~~~~n~~---f~~~~~~~~~~~~~~~~~~~  271 (422)
                      ..+.+|+..+.+.++..++..+++++..||++.+++++  ++.+.++.+++++|||.   ++...+..++.+.+......
T Consensus       151 ~~~~~wr~~f~i~ai~~l~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (356)
T TIGR00901       151 GLITLWGYIFFWTALLILPGLLVTLFLAKEPQEDASVPKPLTQAVLKPIREFFQRKNMIQALLLLLLIVLYKLGDSAATV  230 (356)
T ss_pred             ccccccHHHHHHHHHHHHHHHHHHHHhccCCCcccccchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHH
Confidence            11345999998888877776666666677754321111  11223456788888885   55555566666677777788


Q ss_pred             HHHHHhhhccCccchhH
Q 014600          272 YLAFYVINDLRMGQSAK  288 (422)
Q Consensus       272 y~~~y~~~~~~l~~~~~  288 (422)
                      +++.|..+ .++++...
T Consensus       231 ~~~~~l~~-~g~~~~~~  246 (356)
T TIGR00901       231 LTTLFLLD-MGFSKEEI  246 (356)
T ss_pred             HHHHHHHH-cCCCHHHH
Confidence            99999887 67766543

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=99.73  E-value=1.3e-14  Score=145.80  Aligned_cols=220  Identities=12%  Similarity=0.042  Sum_probs=149.0

Q ss_pred             HHHHHHHHHHHhCCChhHHHHHHHHHHHHhhhhhhhhhhhhcccCCchhHHHHHHHHHHHHHHHhhcCccCccccCCccc
Q 014600           43 WFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTL  122 (422)
Q Consensus        43 ~~~~l~~f~t~~gls~~~~g~i~~i~~l~~ai~~p~~G~lsDr~Grrrp~ll~g~i~~~i~~~~lf~~~~p~~~~~~~~~  122 (422)
                      ..+-++..-++.|.+....++..++..+..++..|+.|.++||+||||. ++.+....+++..+...       .+  +.
T Consensus        35 ~~p~l~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~-l~~~~~~~~~~~~~~~~-------a~--~~  104 (413)
T PRK15403         35 IQPGIINVVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRIGRRPV-LITGALIFTLACAATLF-------TT--SM  104 (413)
T ss_pred             hccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchHH-HHHHHHHHHHHHHHHHH-------cC--CH
Confidence            3333444333449999999999999999999999999999999999887 55666666666544321       11  12


Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchHHHH
Q 014600          123 KVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQY  202 (422)
Q Consensus       123 ~~~~~~~~~~~~l~~~~~~~~~~p~~al~~~~t~~~~eR~~l~~~~~~~~~ig~~l~~~~~~~l~~~~~~~g~~~~~~~~  202 (422)
                      .    .+++.+++.+++.+.......+...|..+ ++||.+..++-.....+|..+++.++..+.+          ..+|
T Consensus       105 ~----~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~----------~~gw  169 (413)
T PRK15403        105 T----QFLIARFIQGTSICFIATVGYVTVQEAFG-QTKGIKLMAIITSIVLVAPIIGPLSGAALMH----------FVHW  169 (413)
T ss_pred             H----HHHHHHHHHHHHHHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------hcCH
Confidence            1    12233345666655544445567778765 5788898888777778888777766544432          2479


Q ss_pred             HHHHHHHHHHHHHHHhhhhccccCcccccccC-CCcchhhhHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhcc
Q 014600          203 RWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLR-GNSHARISWAYWFKKILYYQVALVYMLTRLVVNVSQAYLAFYVINDL  281 (422)
Q Consensus       203 ~~~~~i~~~i~~i~~~i~~~~~~E~~~~~~~~-~~~~~~~~~~~~~~n~~f~~~~~~~~~~~~~~~~~~~y~~~y~~~~~  281 (422)
                      ++.+++.++++++..+..++..||++.+++++ ++.+..+.++.++|||+++...+.+.+..........+.|.|+++..
T Consensus       170 ~~~f~~~~~~~~i~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~  249 (413)
T PRK15403        170 KVLFAIIAVMGLIAFVGLLLAMPETVKRGAVPFSAKSVLRDFRNVFRNRLFLTGAATLSLSYIPMMSWVAVSPVILIDAG  249 (413)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCCccccCCCCChHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHhChHHHHHhc
Confidence            99998888877776665566677754322111 11233456788999999988777666666666666777899998887


Q ss_pred             Cccchh
Q 014600          282 RMGQSA  287 (422)
Q Consensus       282 ~l~~~~  287 (422)
                      +.++..
T Consensus       250 g~s~~~  255 (413)
T PRK15403        250 GMTTSQ  255 (413)
T ss_pred             CCCHHH
Confidence            776553

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=99.73  E-value=1.2e-14  Score=144.86  Aligned_cols=300  Identities=12%  Similarity=0.014  Sum_probs=188.3

Q ss_pred             chhHHHHHHHHHHHHHHHHHHhCCChhHHHHH--HHHHHHHhhhhhhhhhh-hhcccCCchhHHHHHHHHHHHHHHHhhc
Q 014600           33 HMLNDITAACWFTYLLLFLTDIGLSPRGAAAV--MLSGQIADGFATIFIGE-LIDRFGHFKIWHGAGSVLVAVSFSSVFG  109 (422)
Q Consensus        33 ~~~~~~~~~~~~~~l~~f~t~~gls~~~~g~i--~~i~~l~~ai~~p~~G~-lsDr~Grrrp~ll~g~i~~~i~~~~lf~  109 (422)
                      -+.+.+..++..+++|.|++|.|.|+.++|.+  ..+..+...+..|+++. .+||+||||+|++......++....+..
T Consensus        10 y~~~g~~~~~~~p~lp~~l~~~g~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~~g~r~~~i~~~~~~~~~~~~~~~~   89 (390)
T TIGR02718        10 YLSQGIPIGLAMDALPTLLREDGAPLTALAFLPLVGLPWVVKFLWAPLVDNWWSWRLGRRRSWVLPMQCLVSACLASLAL   89 (390)
T ss_pred             HHHHHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCcchhHHHHHHHHHHHHHHHHHc
Confidence            35677788888899999999999999999997  46668888889999955 7999999999976654444432222211


Q ss_pred             CccCccccCCccchhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 014600          110 GCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSV  189 (422)
Q Consensus       110 ~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~al~~~~t~~~~eR~~l~~~~~~~~~ig~~l~~~~~~~l~~~  189 (422)
                       ..|   . .....+    .+....+.....+..++...++..|..+ +++|+..++.+..+..+|.++++.....+.+ 
T Consensus        90 -~~~---~-~~~~~~----~~~~~~~~~~~~a~~d~~~d~~~~~~~~-~~~~~~~~~~~~~g~~lG~~~g~~~~~~l~~-  158 (390)
T TIGR02718        90 -VGP---D-VAGAGW----AVGLLACASLASATQDIATDGMAAEHFN-GRTLAKGNAVQIAGVMIGFFGGGAGTLVLFG-  158 (390)
T ss_pred             -CCc---c-hhhHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhCC-HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence             011   1 111111    1111223555666777777888777654 5677888888888778888887755544443 


Q ss_pred             ccCCCCCchHHHHHHHHHHHHHHHHHHHhhhhccccCcccccccCCCcchhhhHHHHHHhHHHHHHHHHHHHHHHHHHhh
Q 014600          190 STAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISWAYWFKKILYYQVALVYMLTRLVVNVS  269 (422)
Q Consensus       190 ~~~~g~~~~~~~~~~~~~i~~~i~~i~~~i~~~~~~E~~~~~~~~~~~~~~~~~~~~~~n~~f~~~~~~~~~~~~~~~~~  269 (422)
                               ..+|+..+++.+++.++..+..++..+|++ +++++ +.+..+++++.+|||.++..+...++........
T Consensus       159 ---------~~gw~~~f~~~a~l~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~  227 (390)
T TIGR02718       159 ---------KFGQRPAFLLVACVPLASLVCVLWLKDRAV-ASPEA-PLARRASLFRFFRRPLAWSLLALALLSAMTAVSG  227 (390)
T ss_pred             ---------HhCHHHHHHHHHHHHHHHHHHHHHcCCCCc-Ccccc-chhhHHHHHHHHcCcCHHHHHHHHHHHHHHHHHH
Confidence                     347888888887776665555444433322 21111 1122345678899998877666666666666677


Q ss_pred             hHHHHHHhhhccCccchhHhHH---------HH--HH-------------HHHHHHHH-------HHHH-----------
Q 014600          270 QAYLAFYVINDLRMGQSAKALV---------PA--II-------------YICSFIVS-------ILLQ-----------  307 (422)
Q Consensus       270 ~~y~~~y~~~~~~l~~~~~~~i---------P~--~~-------------~~~~~~~~-------~~~~-----------  307 (422)
                      ..+.+.|..+ .+++....+.+         ..  ..             ...+.+..       ....           
T Consensus       228 ~~~~~~~l~~-~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (390)
T TIGR02718       228 FGLSKLYLVD-AGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLAGSLALLWFAQAAFWLAPGIAVA  306 (390)
T ss_pred             HHHhhHHHHh-cCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcccCCcHHHH
Confidence            7788888877 47776543210         00  00             00011000       0000           


Q ss_pred             ----HH-----Hhh------hhhhhhcC-ccccccceehhhHHHHHHHHHHHHHHHHHhHhhCCCc
Q 014600          308 ----VT-----GIS------MQNVLVGE-DLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQSMSPTV  357 (422)
Q Consensus       308 ----v~-----~~~------~~~~~~g~-r~~g~~~~~s~~~~~~K~~~a~~~~i~g~~l~~~Gy~  357 (422)
                          +.     +..      ......++ +.+|.  .++..+.+..+|..+++.+.|.+.+..||+
T Consensus       307 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~--~~~~~~~~~~lg~~~g~~~~G~l~~~~G~~  370 (390)
T TIGR02718       307 WSCSAFGSLITGITSVAIYTAFMRFAGDGDQAGT--DVTAVQSTRDLGELIASSIAGYLTDRFGYA  370 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCcccchHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHccH
Confidence                00     100      11223344 67788  899999999999999999999999988874

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.73  E-value=9.8e-15  Score=145.94  Aligned_cols=290  Identities=12%  Similarity=0.078  Sum_probs=174.8

Q ss_pred             HHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHhhhhhhhhhhhhcccCCchhHHHHHHHHHHHHHHHhhcCccCccc
Q 014600           37 DITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRI  116 (422)
Q Consensus        37 ~~~~~~~~~~l~~f~t~~gls~~~~g~i~~i~~l~~ai~~p~~G~lsDr~Grrrp~ll~g~i~~~i~~~~lf~~~~p~~~  116 (422)
                      ...........+.+..|.|.++.++|++.+...+...+..|+.|+++||+||||.++ .+.....++..++..       
T Consensus        28 ~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~-~~~~~~~~~~~~~~~-------   99 (406)
T PRK11551         28 GLDLQSAGVAAPRMAQEFGLDVAQMGWAFSAGILGLLPGALLGGRLADRIGRKRILI-VSVALFGLFSLATAQ-------   99 (406)
T ss_pred             HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHH-HHHHHHHHHHHHHHH-------
Confidence            333344444556565556999999999999999999999999999999999999854 566666665443321       


Q ss_pred             cCCccchhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCC
Q 014600          117 LSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHA  196 (422)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~al~~~~t~~~~eR~~l~~~~~~~~~ig~~l~~~~~~~l~~~~~~~g~~  196 (422)
                      .+  +.+    ..++...+.+++.+....+..++..|+.+ +++|++..++.+.+..+|..+++.++..+.         
T Consensus       100 ~~--~~~----~~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~---------  163 (406)
T PRK11551        100 AW--DFP----SLLVARLLTGVGLGGALPNLIALTSEAVG-PRLRGTAVSLMYCGVPFGGALASVIGVLAA---------  163 (406)
T ss_pred             hc--cHH----HHHHHHHHHHhhHHHHHHHHHHHHHHHcC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHc---------
Confidence            11  122    12223346778888777888899999875 678999999988888888877765543221         


Q ss_pred             chHHHHHHHHHHHHHHHHHHHhhhhccccCcccccccCC-CcchhhhHHHHHHhH---HHHHHHHHHHHHHHHHHhhhHH
Q 014600          197 DLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRG-NSHARISWAYWFKKI---LYYQVALVYMLTRLVVNVSQAY  272 (422)
Q Consensus       197 ~~~~~~~~~~~i~~~i~~i~~~i~~~~~~E~~~~~~~~~-~~~~~~~~~~~~~n~---~f~~~~~~~~~~~~~~~~~~~y  272 (422)
                       ...+|++.+.+.+++.++...+..+..||++.++++++ +.+.++..+..+|++   +.+.+...+++..........|
T Consensus       164 -~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (406)
T PRK11551        164 -GDAAWRHIFYVGGVGPLLLVPLLMRWLPESRAFAQAAGAGKQRAPVLRALFGEGRATATLLLWISYFFTLIVLYFLLNW  242 (406)
T ss_pred             -cccCHHHHHHHHHHHHHHHHHHHHHhCCCChhHHhccCcchhhhhhHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence             12368888777666555555555566787653221111 111112223333332   2233333334434445566678


Q ss_pred             HHHHhhhccCccchhHh---------HHHHHH--------------HHHHHH---HHHHH-H-------------HHH--
Q 014600          273 LAFYVINDLRMGQSAKA---------LVPAII--------------YICSFI---VSILL-Q-------------VTG--  310 (422)
Q Consensus       273 ~~~y~~~~~~l~~~~~~---------~iP~~~--------------~~~~~~---~~~~~-~-------------v~~--  310 (422)
                      +|.|..+ .+++.....         .++...              ...+.+   ...+. .             +.+  
T Consensus       243 ~p~~~~~-~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  321 (406)
T PRK11551        243 LPSLLVG-QGLSRSQAGLVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAALAAAPSFAGMLLAGFAAGLF  321 (406)
T ss_pred             HHHHHHh-CCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence            8888765 455443211         000000              000000   00000 0             001  


Q ss_pred             --------hhhhhhhhcCccccccceehhhHHHHHHHHHHHHHHHHHhHhhC
Q 014600          311 --------ISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQSMS  354 (422)
Q Consensus       311 --------~~~~~~~~g~r~~g~~~~~s~~~~~~K~~~a~~~~i~g~~l~~~  354 (422)
                              ..+..+....++.|.  ..|..+....++..+++.+.|.+.+..
T Consensus       322 ~~~~~~~~~~~~~~~~p~~~~g~--~~g~~~~~~~~g~~~g~~~~g~l~~~~  371 (406)
T PRK11551        322 VVGGQSVLYALAPLFYPTQVRGT--GVGAAVAVGRLGSMAGPLLAGQLLALG  371 (406)
T ss_pred             HHhHHHHHHHHHHHHcchhhhhh--hhhHHHHhhhHHHHHHhhhHhhhhccC
Confidence                    122344556677788  899999999999999999999987754

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=99.72  E-value=1.1e-15  Score=153.66  Aligned_cols=292  Identities=8%  Similarity=-0.012  Sum_probs=185.7

Q ss_pred             HHHHHHHHHh-CCChhHHHHHHHHHHHHhhhhhhhhhhhhcccCCchhHHHHHHHHHHHHHHHhhcCccCccccCCccch
Q 014600           45 TYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLK  123 (422)
Q Consensus        45 ~~l~~f~t~~-gls~~~~g~i~~i~~l~~ai~~p~~G~lsDr~Grrrp~ll~g~i~~~i~~~~lf~~~~p~~~~~~~~~~  123 (422)
                      ++....+++. |++..++|++.++..+..++..++.|+++||+||||. +..+.++.+++..+...       +++  ..
T Consensus        28 ~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~-~~~~~~~~~~~~~~~~~-------~~~--~~   97 (412)
T TIGR02332        28 GFAGLTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAIIGARRW-IAGIMVLWGIASTATMF-------ATG--PE   97 (412)
T ss_pred             HHHHHhhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHHH-HHHHHHHHHHHHHHHHH-------hcC--HH
Confidence            3444455555 9999999999999999999999999999999999997 55677777766554321       111  11


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchHHHHH
Q 014600          124 VETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYR  203 (422)
Q Consensus       124 ~~~~~~~~~~~l~~~~~~~~~~p~~al~~~~t~~~~eR~~l~~~~~~~~~ig~~l~~~~~~~l~~~~~~~g~~~~~~~~~  203 (422)
                          .+.+.+.+.+++.+.......++..|+.+ ++||++..++.+....+|..+++.++..+.....    ..+..+||
T Consensus        98 ----~l~~~r~l~G~~~~~~~~~~~~~~~~~~~-~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~----~~~~~gwr  168 (412)
T TIGR02332        98 ----SLYLLRILVGIAEAGFLPGILLYLTFWFP-AYFRARANALFMIAMPVTMALGLILSGYILALDG----LMALKGWQ  168 (412)
T ss_pred             ----HHHHHHHHHHHHHhhHHHHHHHHHHHHcC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC----CCCccchh
Confidence                12223446777777766666677888876 6789999999988888888888877665543100    00134899


Q ss_pred             HHHHHHHHHHHHHHhhhhccccCcccccc-----cC----------------CC----c---chhhhHHHHHHhHHHHHH
Q 014600          204 WIAYSSIFIGCCFVGIFLSRTEEPRLKMG-----LR----------------GN----S---HARISWAYWFKKILYYQV  255 (422)
Q Consensus       204 ~~~~i~~~i~~i~~~i~~~~~~E~~~~~~-----~~----------------~~----~---~~~~~~~~~~~n~~f~~~  255 (422)
                      +.+.+.++++++..++.++.+||++.+..     ++                ++    .   ..++.+++++ +|.++..
T Consensus       169 ~~f~~~~~~~l~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  247 (412)
T TIGR02332       169 WLFLLEGFPSVILGVMTWFWLDDSPDKAKWLDEEDKKALKEMIDNDQLTLEQPEGAFAHAAMPQRSMLREIF-TPAIMLY  247 (412)
T ss_pred             HHHHHHHHHHHHHHHHHhhccCCCcccCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHHHHHhc-ChHHHHH
Confidence            99998888877766677777888653210     00                00    0   0012234433 5677777


Q ss_pred             HHHHHHHHHHHHhhhHHHHHHhhhc-cCccchhH---hHHHHHH---------------------HHHHH----HHHHHH
Q 014600          256 ALVYMLTRLVVNVSQAYLAFYVIND-LRMGQSAK---ALVPAII---------------------YICSF----IVSILL  306 (422)
Q Consensus       256 ~~~~~~~~~~~~~~~~y~~~y~~~~-~~l~~~~~---~~iP~~~---------------------~~~~~----~~~~~~  306 (422)
                      .+.+++.........+|+|.|+.+. .+.+....   ...|.+.                     .+..+    +...+.
T Consensus       248 ~~~~~~~~~~~~~~~~~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr~~~r~~~~~~~~~~~~~~~~~~  327 (412)
T TIGR02332       248 TLAYFCLTNTLSAINIWTPQILQSFNQGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDRLKERKHHTALPYLFAAAGWLLA  327 (412)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHhHHHhhHHHHHHHHHHHHHHHHhcccCccHHHHHHHHHHHHHHHHHH
Confidence            7777777777778889999999873 34432221   1111100                     00000    000000


Q ss_pred             H--------HH-------H--------hhhhhhhhcCccccccceehhhHHHHHHHHHHHHHHHHHhHhhCC-Ccc
Q 014600          307 Q--------VT-------G--------ISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQSMSP-TVL  358 (422)
Q Consensus       307 ~--------v~-------~--------~~~~~~~~g~r~~g~~~~~s~~~~~~K~~~a~~~~i~g~~l~~~G-y~~  358 (422)
                      .        +.       +        ....++..+.+..|.  .+|..+...++|+++++.+.|.+.+..| |+.
T Consensus       328 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~--a~g~~~~~~~~g~~~~p~~~g~i~~~~g~~~~  401 (412)
T TIGR02332       328 SATDHNLIQLLGIIMASMGSFSAMAIFWTTPDQSISLQARAI--AIAVINATGNIGSALSPFLIGILKDATGSFNS  401 (412)
T ss_pred             HhcCCHHHHHHHHHHHHHHhhhhhhHHHhhcccccchHHHHH--HHHHHHHhhhhhhhhhhhhcccccccCCCCch
Confidence            0        00       0        001122345566777  8999999999999999999999988775 653

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=99.72  E-value=9.5e-15  Score=145.83  Aligned_cols=280  Identities=12%  Similarity=-0.023  Sum_probs=174.1

Q ss_pred             HHHHHHHHHHHhCCChhHHHHHHHHHHHHhhhhhhhhhhhhcccCCchhHHHHHHHHHHHHHHHhhcCccCccccCCccc
Q 014600           43 WFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTL  122 (422)
Q Consensus        43 ~~~~l~~f~t~~gls~~~~g~i~~i~~l~~ai~~p~~G~lsDr~Grrrp~ll~g~i~~~i~~~~lf~~~~p~~~~~~~~~  122 (422)
                      ....+|....|.|+|..++|++.++..+..++..|+.|+++||+||||. +..+....+++....-.       +++  .
T Consensus        28 ~~~~lp~i~~~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~-l~~~~~l~~~~~~~~~~-------a~~--~   97 (393)
T PRK09705         28 VGPLLPQLRQASGMSFSVAALLTALPVVTMGGLALAGSWLHQHVSERRS-VAISLLLIAVGALMREL-------YPQ--S   97 (393)
T ss_pred             cchhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCchHH-HHHHHHHHHHHHHHHHH-------Ccc--h
Confidence            3456666666679999999999999999999999999999999999998 55788888887665431       221  1


Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchHHHH
Q 014600          123 KVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQY  202 (422)
Q Consensus       123 ~~~~~~~~~~~~l~~~~~~~~~~p~~al~~~~t~~~~eR~~l~~~~~~~~~ig~~l~~~~~~~l~~~~~~~g~~~~~~~~  202 (422)
                      .    .+++.+++.+++.+...+...+++.+..+  +||++..+....+...|..++..+.+.+.+..         .+|
T Consensus        98 ~----~ll~~r~l~Gig~~~~~~~~~~~~~~~~~--~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~---------~~w  162 (393)
T PRK09705         98 A----LLLSSALLGGVGIGIIQAVMPSVIKRRFQ--QRTPLVMGLWSAALMGGGGLGAAITPWLVQHS---------ETW  162 (393)
T ss_pred             H----HHHHHHHHHHhHHHHHhhhhhHHHHHHcc--ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhc---------CCH
Confidence            1    23334567888888877777888888763  68999999988888888888877665544321         256


Q ss_pred             HHHHHHHHHHHHHHHhhhhccccCcccccccCCCcchhhhHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhccC
Q 014600          203 RWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISWAYWFKKILYYQVALVYMLTRLVVNVSQAYLAFYVINDLR  282 (422)
Q Consensus       203 ~~~~~i~~~i~~i~~~i~~~~~~E~~~~~~~~~~~~~~~~~~~~~~n~~f~~~~~~~~~~~~~~~~~~~y~~~y~~~~~~  282 (422)
                      ++...+.++..++.....+...++++.++ ++++.+    .++.+|+|+.+.....+.+..........|.|.|+.+ .+
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~----~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~lp~~l~~-~g  236 (393)
T PRK09705        163 YQTLAWWALPAVVALFAWWWQSAREVASS-HKTTTT----PVRVVFTPRAWTLGVYFGLINGGYASLIAWLPAFYIE-IG  236 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCccc-cCCCcC----CcccccCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cC
Confidence            66554444443333222222223222211 111111    1344567777666555555556666778899999987 46


Q ss_pred             ccchhHhHH---HHHH--------------------HH-------HHHHHHHHHH---------HHHhh----------h
Q 014600          283 MGQSAKALV---PAII--------------------YI-------CSFIVSILLQ---------VTGIS----------M  313 (422)
Q Consensus       283 l~~~~~~~i---P~~~--------------------~~-------~~~~~~~~~~---------v~~~~----------~  313 (422)
                      .+....+..   ..+.                    .+       .+.......+         +.+.+          .
T Consensus       237 ~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~  316 (393)
T PRK09705        237 ASAQYSGSLLALMTLGQAAGALLMPAMARHQDRRKLLMLALVLQLVGFCGFIWLPLQLPVLWAMVCGLGLGGAFPLCLLL  316 (393)
T ss_pred             CChhhhhHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHhccchHHHHHHH
Confidence            654432100   0000                    00       1111000000         01111          1


Q ss_pred             hhhhhc-CccccccceehhhHHHHHHHHHHHHHHHHHhHhhCC
Q 014600          314 QNVLVG-EDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQSMSP  355 (422)
Q Consensus       314 ~~~~~g-~r~~g~~~~~s~~~~~~K~~~a~~~~i~g~~l~~~G  355 (422)
                      ..+..+ ++..|.  .++..+...+++..+++.+.|++.+..|
T Consensus       317 ~~~~~~~~~~~g~--~~g~~~~~~~~~~~~gp~~~G~l~~~~g  357 (393)
T PRK09705        317 ALDHSVQPAIAGK--LVAFMQGIGFIIAGLAPWFSGVLRSISG  357 (393)
T ss_pred             HHhhcCCHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            122222 344566  8888889999999999999999999876

>PRK12382 putative transporter; Provisional

Probab=99.72  E-value=1.6e-14  Score=143.95  Aligned_cols=304  Identities=12%  Similarity=0.066  Sum_probs=173.7

Q ss_pred             eeeeeeeccchhHHHHHHHHHHHHHHHHHHh-CCChhHHHHHHHHHHHHhhhhhhhhhhhhcccCCchhHHHHHHHHHHH
Q 014600           24 WSVLYYGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAV  102 (422)
Q Consensus        24 ~~~~~y~~g~~~~~~~~~~~~~~l~~f~t~~-gls~~~~g~i~~i~~l~~ai~~p~~G~lsDr~Grrrp~ll~g~i~~~i  102 (422)
                      +..+...++.+...+...+..+.++.|..+. |+|+.++|++.+...+..++.+|+.|+++||+||||++ +.+.+...+
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~~p~l~~~l~~~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l-~~~~~~~~~   93 (392)
T PRK12382         15 FSLFRIAFAVFLTYMTVGLPLPVIPLFVHHDLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQYGAKRSA-LQGMLACGL   93 (392)
T ss_pred             ccHHHHHHHHHHHHHHHHHHhhhhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcchHHH-HHHHHHHHH
Confidence            3444455566666666677778888887765 99999999999999999999999999999999999984 455555554


Q ss_pred             HHHHh-hcCccCccccCCccchhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCccchhhHHHHHHHHHHHHHHHHHH
Q 014600          103 SFSSV-FGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYA  181 (422)
Q Consensus       103 ~~~~l-f~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~al~~~~t~~~~eR~~l~~~~~~~~~ig~~l~~~  181 (422)
                      +.... .....|     .. ....+...++.+.+.+++.+....+..++..+..+ +|||++..++......+|..+++.
T Consensus        94 ~~~~~~~~~~~~-----~~-~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~-~~~r~~a~~~~~~~~~~g~~~g~~  166 (392)
T PRK12382         94 AGLAYLLAAILP-----VS-APFKFALLVVGRLILGFGESQLLTGALTWGLGLVG-PKHSGKVMSWNGMAMYGALAAGAP  166 (392)
T ss_pred             HHHHHHhhhccc-----cc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC-ccccchhhhHHHHHHHHHHHHHHH
Confidence            43221 100011     00 00011222333456788888777777788888876 689999999988777777777766


Q ss_pred             HHHHHHhhccCCCCCchHHHHHHHHHHHHHHHHHHHhhhhccccCcccccccCCCcchhhhHHHHHHhHHHHHHHHHHHH
Q 014600          182 IAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISWAYWFKKILYYQVALVYML  261 (422)
Q Consensus       182 ~~~~l~~~~~~~g~~~~~~~~~~~~~i~~~i~~i~~~i~~~~~~E~~~~~~~~~~~~~~~~~~~~~~n~~f~~~~~~~~~  261 (422)
                      ++..+..          ..+|++.+.+..++.++.. ......||.+.  +++++.+.++..+...+ +.     ...++
T Consensus       167 ~~~~l~~----------~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~~~~~~~~~~~~~~~-~~-----~~~~l  227 (392)
T PRK12382        167 LGLLLHS----------HFGFAALALTTMVLPLLAW-AFNGTVRKVPA--HAGERPSLWSVVGLIWK-PG-----LGLAL  227 (392)
T ss_pred             HHHHHHh----------ccChHHHHHHHHHHHHHHH-HHHHhccCCCC--CcccCchHHHHHHHHHH-hH-----HHHHH
Confidence            6544432          2367776655433333222 11222233211  11112222222222211 11     11122


Q ss_pred             HHHHHHhhhHHHHHHhhhccCccchhHh-------HH---HHHH------------------HHHHHHHHHHHH------
Q 014600          262 TRLVVNVSQAYLAFYVINDLRMGQSAKA-------LV---PAII------------------YICSFIVSILLQ------  307 (422)
Q Consensus       262 ~~~~~~~~~~y~~~y~~~~~~l~~~~~~-------~i---P~~~------------------~~~~~~~~~~~~------  307 (422)
                      ..........+.+.|..+. +.......       .+   +..-                  ...+.+.....+      
T Consensus       228 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (392)
T PRK12382        228 QGVGFAVIGTFVSLYFASK-GWAMAGFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLWLAPTAWVAL  306 (392)
T ss_pred             HHHHHhHHHHHHHHHHHhc-CCchhHHHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHHHcccHHHHH
Confidence            2233444556777777653 33322110       00   0000                  000100000000      


Q ss_pred             ----HHH-------hh---hhhhhhcCccccccceehhhHHHHHHHHHHHHHHHHHhHhhCCCc
Q 014600          308 ----VTG-------IS---MQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQSMSPTV  357 (422)
Q Consensus       308 ----v~~-------~~---~~~~~~g~r~~g~~~~~s~~~~~~K~~~a~~~~i~g~~l~~~Gy~  357 (422)
                          +.+       +.   ...+..++++.|.  .+|..+....+|.++++.+.|++.+..||.
T Consensus       307 ~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~--~~g~~~~~~~~g~~ig~~~~g~l~~~~g~~  368 (392)
T PRK12382        307 AGAALTGAGCSLIFPALGVEVVKRVPSQVRGT--ALGGYAAFQDIAYGVSGPLAGMLATSFGYP  368 (392)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHhcCHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhCch
Confidence                001       11   1233456777888  999999999999999999999999988875

>PRK10091 MFS transport protein AraJ; Provisional

Probab=99.72  E-value=1.2e-14  Score=144.43  Aligned_cols=230  Identities=11%  Similarity=0.003  Sum_probs=150.9

Q ss_pred             eeeccchhHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHhhhhhhhhhhhhcccCCchhHHHHHHHHHHHHHHHh
Q 014600           28 YYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSV  107 (422)
Q Consensus        28 ~y~~g~~~~~~~~~~~~~~l~~f~t~~gls~~~~g~i~~i~~l~~ai~~p~~G~lsDr~Grrrp~ll~g~i~~~i~~~~l  107 (422)
                      .+..+.+..........+.++.+..|.|.+..++|++.+...+...+..|+.|+++||+||||. +..+....+++..++
T Consensus         7 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~-~~~~~~~~~~~~~l~   85 (382)
T PRK10091          7 SLALGTFGLGMAEFGIMGVLTELAHDVGISIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHI-LLFLVALCVIGNAMF   85 (382)
T ss_pred             HHHHHHHHHHhhHHHHHhChHHHHHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccCccHHH-HHHHHHHHHHHHHHH
Confidence            3444555566666666777787777779999999999999999999999999999999999877 556777777776543


Q ss_pred             hcCccCccccCCccchhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 014600          108 FGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVF  187 (422)
Q Consensus       108 f~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~al~~~~t~~~~eR~~l~~~~~~~~~ig~~l~~~~~~~l~  187 (422)
                      -.       ++  +.+    .+.+.+.+.+++.+.......++..++.+ +++|++..+....+..+|..+++.++..+.
T Consensus        86 ~~-------~~--~~~----~l~~~r~l~G~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~  151 (382)
T PRK10091         86 TL-------SS--SYL----MLAIGRLVSGFPHGAFFGVGAIVLSKIIK-PGKVTAAVAGMVSGMTVANLLGIPLGTYLS  151 (382)
T ss_pred             HH-------hC--cHH----HHHHHHHHHHhhhHHHHHHHHHHHHHhCC-hHHhhHHHHHHHHHHHHHHHHhccHHHHHh
Confidence            21       11  122    12233456777777666666677778764 577888888777777777766654443332


Q ss_pred             hhccCCCCCchHHHHHHHHHHHHHHHHHHHhhhhccccCcccccccCCCcchhhhHHHHHHhHHHHHHHHHHHHHHHHHH
Q 014600          188 SVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISWAYWFKKILYYQVALVYMLTRLVVN  267 (422)
Q Consensus       188 ~~~~~~g~~~~~~~~~~~~~i~~~i~~i~~~i~~~~~~E~~~~~~~~~~~~~~~~~~~~~~n~~f~~~~~~~~~~~~~~~  267 (422)
                      +          ..+||+.+.+.+++.++..+..++..||+++++    +.+.++.+ +.+||++++.......+......
T Consensus       152 ~----------~~gwr~~f~~~~~~~~~~~~~~~~~lp~~~~~~----~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  216 (382)
T PRK10091        152 Q----------EFSWRYTFLLIAVFNIAVLASIYFWVPDIRDEA----KGGLREQF-HFLRSPAPWLIFAATMFGNAGVF  216 (382)
T ss_pred             h----------hccHHHHHHHHHHHHHHHHHHHHHhCCCCCccc----ccCHHHHH-HHhcChHHHHHHHHHHHHHHHHH
Confidence            1          247899888887777666655566677753221    11223333 35677766654444444434444


Q ss_pred             hhhHHHHHHhhhccCccchh
Q 014600          268 VSQAYLAFYVINDLRMGQSA  287 (422)
Q Consensus       268 ~~~~y~~~y~~~~~~l~~~~  287 (422)
                      ....|.+.|+.+..+.++..
T Consensus       217 ~~~~~~~~~~~~~~g~s~~~  236 (382)
T PRK10091        217 AWFSYIKPYMMFISGFSETS  236 (382)
T ss_pred             HHHHHHHHHHHHhcCCCHHH
Confidence            45567777887766766543

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=99.72  E-value=1.2e-14  Score=145.09  Aligned_cols=231  Identities=9%  Similarity=-0.051  Sum_probs=150.1

Q ss_pred             eeeeccchhHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHhhhhhhhhhhhhcccCCchhHHHHHHHHHHHHHHH
Q 014600           27 LYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSS  106 (422)
Q Consensus        27 ~~y~~g~~~~~~~~~~~~~~l~~f~t~~gls~~~~g~i~~i~~l~~ai~~p~~G~lsDr~Grrrp~ll~g~i~~~i~~~~  106 (422)
                      ..+..+.+...+........++....|.|.++...+++.....+..++..|+.|+++||+||||. ++++....+++..+
T Consensus         6 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~v-l~~~~~~~~~~~~~   84 (393)
T PRK11195          6 YAIMAAQFFSALADNALLFAAIALLKELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRV-MFIANGIKLLGCLL   84 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhccCCchh-hHHHHHHHHHHHHH
Confidence            34556666666655555555555566668999999999999999999999999999999999998 45666666665443


Q ss_pred             hhcCccCccccCCccchhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCccchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 014600          107 VFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIV  186 (422)
Q Consensus       107 lf~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~al~~~~t~~~~eR~~l~~~~~~~~~ig~~l~~~~~~~l  186 (422)
                      +..       .++  .       .+.+.+.+++.+...+...++++|+.+ ++||++.+++......+|.++++.+++.+
T Consensus        85 ~~~-------~~~--~-------~~~r~l~G~~~a~~~pa~~a~i~~~~~-~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l  147 (393)
T PRK11195         85 MLF-------GIH--P-------LLAYGLVGIGAAAYSPAKYGILTELLP-GEKLVKANGWMEGSTIAAILLGTVLGGAL  147 (393)
T ss_pred             HHH-------HHH--H-------HHHHHHHHHHHHHHHHHHHHHHHHHcC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            221       111  1       222346788888888999999999987 68999999999988888888888877666


Q ss_pred             HhhccCCCCCchHHHHHHHHHHHHHHHHHHHhhhhccccCcccccccCC-C-----cchhhhHHHHHHhHHHHHHHHHHH
Q 014600          187 FSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRG-N-----SHARISWAYWFKKILYYQVALVYM  260 (422)
Q Consensus       187 ~~~~~~~g~~~~~~~~~~~~~i~~~i~~i~~~i~~~~~~E~~~~~~~~~-~-----~~~~~~~~~~~~n~~f~~~~~~~~  260 (422)
                      .+.           .|+..+.+.+....+. .+..+.+||++.++++++ +     .+.++.++.++|||.++.......
T Consensus       148 ~~~-----------~~~~~~~i~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  215 (393)
T PRK11195        148 ADP-----------HAEAALAVCALIYLLA-ALFNLFIPRLGARRPGQSWNPIALLRDFFHACRVLWRDKLGRFSLAGTT  215 (393)
T ss_pred             HHH-----------HHHHHHHHHHHHHHHH-HHHHhcCCCCcccccccCCCHHHHHHHHHHHHHHHHhCchhHHHHHHHH
Confidence            531           2444444443333322 333456676543221111 1     112234567788888765443333


Q ss_pred             HHHHHHHhhhHHHHHHhhhccCccchh
Q 014600          261 LTRLVVNVSQAYLAFYVINDLRMGQSA  287 (422)
Q Consensus       261 ~~~~~~~~~~~y~~~y~~~~~~l~~~~  287 (422)
                      +.+.........++.|..+..+.++..
T Consensus       216 ~~~~~~~~~~~~~~~~~~~~lg~s~~~  242 (393)
T PRK11195        216 LFWGAGATLRFLVLAWAPVALGITLNQ  242 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCChhH
Confidence            333444444556667777666765543

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=99.72  E-value=2.3e-15  Score=153.89  Aligned_cols=296  Identities=14%  Similarity=0.066  Sum_probs=193.8

Q ss_pred             ccchhHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHhhhhhhhhhhhhcccCCchhHHHHHHHHHHHHHHHhhcC
Q 014600           31 SGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGG  110 (422)
Q Consensus        31 ~g~~~~~~~~~~~~~~l~~f~t~~gls~~~~g~i~~i~~l~~ai~~p~~G~lsDr~Grrrp~ll~g~i~~~i~~~~lf~~  110 (422)
                      .+.+...+........+|.+..+.|.++.++|++.+...+..++..|+.|+++||+||||. ++.+.+..+++..++.. 
T Consensus         9 ~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~-~~~~~~~~~~~~~~~~~-   86 (485)
T TIGR00711         9 LGTFMAVLDSTIVNVAIPTIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRFGTRRL-FLISTFAFTLGSLLCGV-   86 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHHH-HHHHHHHHHHHHHHHhC-
Confidence            3444555555666667777777779999999999999999999999999999999999988 45677777776654331 


Q ss_pred             ccCccccCCccchhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 014600          111 CMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVS  190 (422)
Q Consensus       111 ~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~al~~~~t~~~~eR~~l~~~~~~~~~ig~~l~~~~~~~l~~~~  190 (422)
                            .+  +..    .+++.+.+.+++.+....+..+++.|..+ +++|++..++......+|..+++.+++.+.+  
T Consensus        87 ------~~--~~~----~l~~~~~~~G~~~~~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~--  151 (485)
T TIGR00711        87 ------AP--NLE----LMIIFRVIQGFGGGPLIPLSFSTLLNIYP-PEKRGRAMAIWGLTVLVAPALGPTLGGWIIE--  151 (485)
T ss_pred             ------cC--CHH----HHHHHHHHHHhhhhhHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHHHhhhhhccHhHhcc--
Confidence                  11  111    12233456778888888888899999986 6899999999888888888877766544332  


Q ss_pred             cCCCCCchHHHHHHHHHHHHHHHHHHHhhhhccccCcccccccC-----------------------CCcchh-------
Q 014600          191 TAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLR-----------------------GNSHAR-------  240 (422)
Q Consensus       191 ~~~g~~~~~~~~~~~~~i~~~i~~i~~~i~~~~~~E~~~~~~~~-----------------------~~~~~~-------  240 (422)
                              ..+|++.+++.++++++..++..+..||++.++.++                       ++....       
T Consensus       152 --------~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  223 (485)
T TIGR00711       152 --------NYHWRWIFLINVPIGIIVVVVAFFILPRDKPAASENFDFLGLLLLSVGLGSLLYGLSEGPERGWFDSNEILI  223 (485)
T ss_pred             --------CcCceehhhhhhHHHHHHHHHHHHHcCCccccccCCCcHHHHHHHHHHHHHHHHHHhhCCCCCCCCchHHHH
Confidence                    247888888777777766666666666643211100                       000000       


Q ss_pred             --------------------hh--HHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhccCccchhHh--HHHH---
Q 014600          241 --------------------IS--WAYWFKKILYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKA--LVPA---  293 (422)
Q Consensus       241 --------------------~~--~~~~~~n~~f~~~~~~~~~~~~~~~~~~~y~~~y~~~~~~l~~~~~~--~iP~---  293 (422)
                                          +.  -.+++|||+++...+..++..........++|.|+++..+.++....  ..|.   
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~~~  303 (485)
T TIGR00711       224 LSITGLVAIIAFVVWELTDDNPLVDLRLFKYRNFTIGCVYMSLLGLGLYGSFYLLPLYLQQVLGYTALQAGLHILPVGLA  303 (485)
T ss_pred             HHHHHHHHHHHHHHHHHcCCCCccCHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence                                00  02467888877666666666666667778899999988787664321  1110   


Q ss_pred             -------HH-----------HHHHHHHHH-----HH---------------H-HHHhh----------hhhhhhcCcccc
Q 014600          294 -------II-----------YICSFIVSI-----LL---------------Q-VTGIS----------MQNVLVGEDLSG  324 (422)
Q Consensus       294 -------~~-----------~~~~~~~~~-----~~---------------~-v~~~~----------~~~~~~g~r~~g  324 (422)
                             ..           ...+..+..     ..               . +.+.+          ......++++.|
T Consensus       304 ~~~~~~~~g~l~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~g  383 (485)
T TIGR00711       304 PMLSSPIAGRMGDKIDPRKLVTIGLILYAVGFYWRAFTFTPDTPFLAIALPQFIRGFGMGCFFMPLTTIALSGLPPHKIA  383 (485)
T ss_pred             HHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHh
Confidence                   00           011111000     00               0 01111          122334667788


Q ss_pred             ccceehhhHHHHHHHHHHHHHHHHHhHhh
Q 014600          325 CAFVCGTLSFLDKMSCGIAVYVLQSYQSM  353 (422)
Q Consensus       325 ~~~~~s~~~~~~K~~~a~~~~i~g~~l~~  353 (422)
                      .  ..|..++.+++|+++|..+.+.+++.
T Consensus       384 ~--~~~~~~~~~~~g~~ig~~i~g~~~~~  410 (485)
T TIGR00711       384 R--GSSLSNFTRQLGGSIGTALITTILTN  410 (485)
T ss_pred             H--HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8  89999999999999999999999874

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.72  E-value=2.6e-14  Score=142.63  Aligned_cols=234  Identities=12%  Similarity=0.021  Sum_probs=141.8

Q ss_pred             eeeeeeccchhHHHHHHHHHHHHHHHHHHh-CCChhHHHHHHHHHHHHhhhhhhhhhhhhcccCCchhHHHHHHHHHHHH
Q 014600           25 SVLYYGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVS  103 (422)
Q Consensus        25 ~~~~y~~g~~~~~~~~~~~~~~l~~f~t~~-gls~~~~g~i~~i~~l~~ai~~p~~G~lsDr~Grrrp~ll~g~i~~~i~  103 (422)
                      ....+-++.+...+......++++.|+++. |.+++++|++.+...+...+..|+.|.++||+||||.+++.+.+..++.
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~~dr~g~r~~~~~~~~~~~~~~   95 (393)
T PRK15011         16 TSTAFLIVAFLTGIAGALQTPTLSIFLTDEVHARPAMVGFFFTGSAVIGILVSQFLAGRSDKRGDRKSLIVFCCLLGVLA   95 (393)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHH
Confidence            344555667778888788888999999887 9999999999988888778887887777999999998776665554444


Q ss_pred             HHHhhcCccCccccCCccchhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCccch--hhHHHHHHHHHHHHHHHHHH
Q 014600          104 FSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSR--VVLTSCRNAFTMVANLSLYA  181 (422)
Q Consensus       104 ~~~lf~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~al~~~~t~~~~eR--~~l~~~~~~~~~ig~~l~~~  181 (422)
                      ..+..       ++  .+.+ .   +++...+.+...+.......++.++..+ +++|  +..+++.+....+|.++++.
T Consensus        96 ~~~~~-------~~--~~~~-~---l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~lg~~~g~~  161 (393)
T PRK15011         96 CTLFA-------WN--RNYF-V---LLFVGVFLSSFGSTANPQMFALAREHAD-KTGREAVMFSSFLRAQVSLAWVIGPP  161 (393)
T ss_pred             HHHHH-------Hh--hHHH-H---HHHHHHHHHHHHHhhHHHHHHHHHHHhh-hccchHHHHHHHHHHHHHHHHHHhhH
Confidence            33221       11  1111 1   1112223333344444445566666543 3444  34557777777888887776


Q ss_pred             HHHHHHhhccCCCCCchHHHHHHHHHHHHHHHHHHHhhhhccccCcccccccCCCcchhhhHHHHHHhHH-HHHHHHHHH
Q 014600          182 IAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISWAYWFKKIL-YYQVALVYM  260 (422)
Q Consensus       182 ~~~~l~~~~~~~g~~~~~~~~~~~~~i~~~i~~i~~~i~~~~~~E~~~~~~~~~~~~~~~~~~~~~~n~~-f~~~~~~~~  260 (422)
                      ++..+.+          ..+|++.+++.+++.++..+.+++..||.+.+++++ +.+ .+   ...+|++ .+.......
T Consensus       162 i~~~l~~----------~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~---~~~~~~~~~~~~~~~~~  226 (393)
T PRK15011        162 LAYALAM----------GFSFTVMYLSAAVAFIVCGVMVWLFLPSMRKELPLA-TGT-LE---APRRNRRDTLLLFVICT  226 (393)
T ss_pred             HHHHHHH----------hcChHHHHHHHHHHHHHHHHHHHhhcCccCCCCccc-ccc-cc---ccccccccHHHHHHHHH
Confidence            6554432          238898888887777777777777778754322111 111 11   1123332 232222223


Q ss_pred             HHHHHHHhhhHHHHHHhhhccCccchh
Q 014600          261 LTRLVVNVSQAYLAFYVINDLRMGQSA  287 (422)
Q Consensus       261 ~~~~~~~~~~~y~~~y~~~~~~l~~~~  287 (422)
                      +.+........+.|.|+++..+++...
T Consensus       227 ~~~~~~~~~~~~~p~~l~~~~~~~~~~  253 (393)
T PRK15011        227 LMWGTNSLYIINMPLFIINELHLPEKL  253 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCCHHH
Confidence            333334445567888888777776543

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=99.71  E-value=4.7e-15  Score=147.78  Aligned_cols=219  Identities=15%  Similarity=0.082  Sum_probs=142.9

Q ss_pred             HHHHHHHHHHHHHhCCChhHHHHHHHHHHHHhhhhhhhhhhhhcccCCchhHHHHHHHHHHHHHHHhhcCccCccccCCc
Q 014600           41 ACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTS  120 (422)
Q Consensus        41 ~~~~~~l~~f~t~~gls~~~~g~i~~i~~l~~ai~~p~~G~lsDr~Grrrp~ll~g~i~~~i~~~~lf~~~~p~~~~~~~  120 (422)
                      ....+.++.+.++.|+|+.++|++.++..+...+.+|+.|+++||+||||. +..+....+++......       .+  
T Consensus        25 ~~~~p~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~-~~~~~~~~~~~~~~~~~-------~~--   94 (394)
T PRK11652         25 TIYVPAIADMARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPV-ILVGMSIFILGTLVALF-------AH--   94 (394)
T ss_pred             HHHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHH-HHHHHHHHHHHHHHHHH-------Hc--
Confidence            333444566666669999999999999999999999999999999999887 55666666666544321       11  


Q ss_pred             cchhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchHH
Q 014600          121 TLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLEN  200 (422)
Q Consensus       121 ~~~~~~~~~~~~~~l~~~~~~~~~~p~~al~~~~t~~~~eR~~l~~~~~~~~~ig~~l~~~~~~~l~~~~~~~g~~~~~~  200 (422)
                      +.+    ...+...+.+++.+.......++..|..+ +++|++..+..+.+..++..+++.+++.+.+          ..
T Consensus        95 ~~~----~l~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~----------~~  159 (394)
T PRK11652         95 SLT----VLIAASAIQGLGTGVGGVMARTLPRDLYE-GTQLRHANSLLNMGILVSPLLAPLIGGLLTT----------LF  159 (394)
T ss_pred             cHH----HHHHHHHHHHhhhhHHHHHHHHHHHHhcC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------cc
Confidence            111    12222345666666555555667777654 5678888888777777777666655543322          23


Q ss_pred             HHHHHHHHHHHHHHHHHhhhhccccCcccccccCCCcchhhhHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhc
Q 014600          201 QYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISWAYWFKKILYYQVALVYMLTRLVVNVSQAYLAFYVIND  280 (422)
Q Consensus       201 ~~~~~~~i~~~i~~i~~~i~~~~~~E~~~~~~~~~~~~~~~~~~~~~~n~~f~~~~~~~~~~~~~~~~~~~y~~~y~~~~  280 (422)
                      +|++.+.+.+++.++..++..+..||++.++  +++.+.++.+++.+|||+++......+...........+.+.|+.+.
T Consensus       160 g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (394)
T PRK11652        160 GWRACYLFLLLLGAGVTFSMARWMPETRPAD--ARRTRVLASYRTLLSNRRFNCYLLMLIGTLAGIAVFEACSGVLMGAV  237 (394)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHhCCccCccc--cchhHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHhChHHHHHH
Confidence            7888887776666655555556678754322  22223567788899999887655444444444445556667777776


Q ss_pred             cCccch
Q 014600          281 LRMGQS  286 (422)
Q Consensus       281 ~~l~~~  286 (422)
                      .+.++.
T Consensus       238 ~g~~~~  243 (394)
T PRK11652        238 LGLSSM  243 (394)
T ss_pred             cCCCHH
Confidence            666554

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=99.71  E-value=4.7e-14  Score=141.59  Aligned_cols=232  Identities=10%  Similarity=-0.038  Sum_probs=155.7

Q ss_pred             HHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHhhhhhhhhhhhhcccCCchhHHHHHHHHHHHHHHHhhcCccCcc
Q 014600           36 NDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCR  115 (422)
Q Consensus        36 ~~~~~~~~~~~l~~f~t~~gls~~~~g~i~~i~~l~~ai~~p~~G~lsDr~Grrrp~ll~g~i~~~i~~~~lf~~~~p~~  115 (422)
                      ..+.+.+..+.++.+.++.|+++.+.|++.+...+...+..|+.|+++||+||||. +..+..+.+++..+..    |  
T Consensus        15 ~G~~~~~~~~l~~~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~-~~~g~~l~~~g~~l~~----~--   87 (410)
T TIGR00885        15 WGFANDITNPMVPQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAG-ILLGLFLYALGAFLFW----P--   87 (410)
T ss_pred             HHHHHHhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHH-HHHHHHHHHHHHHHHH----H--
Confidence            34444555566776655569999999999999999999999999999999999887 6677788777765432    1  


Q ss_pred             ccCCccchhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhc-cCCC
Q 014600          116 ILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVS-TAKT  194 (422)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~al~~~~t~~~~eR~~l~~~~~~~~~ig~~l~~~~~~~l~~~~-~~~g  194 (422)
                       ....+..   ..+++...+.+.+.+..+++.+++..++.+ +++|++..+..+.+..+|..+++.+..+++... +..+
T Consensus        88 -~~~~~~~---~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~~~~~~~~  162 (410)
T TIGR00885        88 -AAEIMNY---TLFLVGLFILTAGLGFLETAANPYILVMGP-ESTATRRLNLAQSFNPFGSIIGMVVAQQLILSNLPHQS  162 (410)
T ss_pred             -HHhhccH---HHHHHHHHHHHhhHHHHHhhhhHHHHHHCC-HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccch
Confidence             1111111   223333457888899999999999988875 567888889988999999999888877765431 1000


Q ss_pred             C---------------CchHHHHHHHHHHHHHHHHHHHhhhhccccCcccccccCCCcchhhhHHHHHHhHHHHHHHHHH
Q 014600          195 H---------------ADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISWAYWFKKILYYQVALVY  259 (422)
Q Consensus       195 ~---------------~~~~~~~~~~~~i~~~i~~i~~~i~~~~~~E~~~~~~~~~~~~~~~~~~~~~~n~~f~~~~~~~  259 (422)
                      .               .....+|++.+.+.+++.++..++.. ..|+++.+++++++.+.++..++++|||.++...+..
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~~~-~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  241 (410)
T TIGR00885       163 QDVLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVALLIM-LTKMPALNHSDAKQISFSASLSRLARIRHYREGVIAQ  241 (410)
T ss_pred             hhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCCCCccccccccchhhHHHHHhChhHHHHHHHH
Confidence            0               00134699988877776665543332 3333322222222223445567889999987755555


Q ss_pred             HHHHHHHHhhhHHHHHHhhhc
Q 014600          260 MLTRLVVNVSQAYLAFYVIND  280 (422)
Q Consensus       260 ~~~~~~~~~~~~y~~~y~~~~  280 (422)
                      ++......+..+|++.|..++
T Consensus       242 f~yvg~e~~~~s~l~~y~~~~  262 (410)
T TIGR00885       242 FFYVGVQIMCWTFIIQYAVRL  262 (410)
T ss_pred             HHHHHHHHHHHHHHHHHHhhc
Confidence            554444446678999998764

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>PRK12307 putative sialic acid transporter; Provisional

Probab=99.70  E-value=7.4e-15  Score=147.78  Aligned_cols=300  Identities=12%  Similarity=0.025  Sum_probs=175.2

Q ss_pred             eeeeccchhHHHHHHHHHHHHHHHHHHh-CCChhHHHHHHHHHHHHhhhhhhhhhhhhcccCCchhHHHHHHHHHHHHHH
Q 014600           27 LYYGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFS  105 (422)
Q Consensus        27 ~~y~~g~~~~~~~~~~~~~~l~~f~t~~-gls~~~~g~i~~i~~l~~ai~~p~~G~lsDr~Grrrp~ll~g~i~~~i~~~  105 (422)
                      +...++.+......... .+..+++.+. |++..+.+++.++..+...+..|+.|+++||+|||+. +..+.+..+++..
T Consensus        21 ~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~-l~~~~~~~~~~~~   98 (426)
T PRK12307         21 FSAWLGYVFDGFDFMLI-FYIMYLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKFGRKPL-MMWSIVAYSVGTG   98 (426)
T ss_pred             HHHHHHHHHHHhHHHHH-HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHH-HHHHHHHHHHHHH
Confidence            33334444333333333 3444445554 9999999999999999999999999999999999887 5567777777654


Q ss_pred             HhhcCccCccccCCccchhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCccchhhHHHHHHHHHHHHHHHHHHHHHH
Q 014600          106 SVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFI  185 (422)
Q Consensus       106 ~lf~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~al~~~~t~~~~eR~~l~~~~~~~~~ig~~l~~~~~~~  185 (422)
                      ....       .+  +.+    .+.+.+.+.+++.+.......++..|..+ +++|++..++...+..+|.++++.+...
T Consensus        99 ~~~~-------~~--~~~----~l~~~r~l~G~g~g~~~~~~~~~~~~~~~-~~~r~~~~~~~~~~~~lg~~~~~~l~~~  164 (426)
T PRK12307         99 LSGL-------AS--GVI----MLTLSRFIVGMGMAGEYACASTYAVESWP-KHLKSKASAFLVSGFGIGNIIAAYFMPS  164 (426)
T ss_pred             HHHH-------Hh--HHH----HHHHHHHHHHHHHhhHHHHHHHHHHHhCC-HhHhhHhhhHHHHHHhHHHHHHHHHHHH
Confidence            4321       11  111    22333456777777777778888899876 6789999999888888888877655433


Q ss_pred             HHhhccCCCCCchHHHHHHHHHHHHHHHHHHHhhhhccccCcccc--cc--cCCC--c----chhhhHHHHHHhHHHHHH
Q 014600          186 VFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLK--MG--LRGN--S----HARISWAYWFKKILYYQV  255 (422)
Q Consensus       186 l~~~~~~~g~~~~~~~~~~~~~i~~~i~~i~~~i~~~~~~E~~~~--~~--~~~~--~----~~~~~~~~~~~n~~f~~~  255 (422)
                      +.+          ..+|++.+.+..+..++ .+......+|++..  ++  ++++  .    ..+..+++++|||.++..
T Consensus       165 l~~----------~~~w~~~f~i~~~~~~~-~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (426)
T PRK12307        165 FAE----------AYGWRAAFFVGLLPVLL-VIYIRARAPESKEWEEAKLSGKGKHSQSAWSVFSLSMKGLFNRAQFPLT  233 (426)
T ss_pred             Hcc----------cCCHHHHHHHHHHHHHH-HHHHHHHCCCChHHHHhhhhccccccccchhhhhHHHHHHHhhchHHHH
Confidence            322          23788877664332222 22212223443210  00  0000  0    012356788899887654


Q ss_pred             HHHHHHH---HHHHHhhhHHHHHHhhhccCccchhHh---------HH---HHHH-----------HHHHHHH-------
Q 014600          256 ALVYMLT---RLVVNVSQAYLAFYVINDLRMGQSAKA---------LV---PAII-----------YICSFIV-------  302 (422)
Q Consensus       256 ~~~~~~~---~~~~~~~~~y~~~y~~~~~~l~~~~~~---------~i---P~~~-----------~~~~~~~-------  302 (422)
                      ...+.+.   .........++|.|+.+. +.+.....         .+   +...           ...+.+.       
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~  312 (426)
T PRK12307        234 LCVFIVLFSIFGANWPIFGLLPTYLAGE-GFDTGVVSNLMTAAAFGTVLGNIVWGLCADRIGLKKTFSIGLLMSFLFIFP  312 (426)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence            3322221   122223566888888764 55433211         00   0000           0001000       


Q ss_pred             HHHHH----------HHH------------hhhhhhhhcCccccccceehhhHHHHHHHHHHHHHHHHHhHhhCCC
Q 014600          303 SILLQ----------VTG------------ISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQSMSPT  356 (422)
Q Consensus       303 ~~~~~----------v~~------------~~~~~~~~g~r~~g~~~~~s~~~~~~K~~~a~~~~i~g~~l~~~Gy  356 (422)
                      .....          +.+            +.+..+..+++..|.  ..|+.....++++.+++.+.|++.+..|+
T Consensus       313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~--~~g~~~~~~~~~~~~gp~~~g~l~~~~g~  386 (426)
T PRK12307        313 LFRIPQDNYLLLGACLFGLMATNVGVGGLVPKFLYDYFPLEVRGL--GTGLIYNLAATSGTFNSMAATWLGITMGL  386 (426)
T ss_pred             HHHHccccHHHHHHHHHHHHHhcccHhHHHHHHHHHhCcHHHHhh--hhhHHHHHHhHHHHHHHHHHHHHHHcccH
Confidence            00000          000            122345567777788  89998889999999999999998776664

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=99.69  E-value=8.7e-15  Score=149.27  Aligned_cols=210  Identities=11%  Similarity=0.060  Sum_probs=151.3

Q ss_pred             CCChhHHHHHHHHHHHHhhhhhhhhhhhhcccCCchhHHHHHHHHHHHHHHHhhcCccCccccCCccchhhhHHHHHHHH
Q 014600           55 GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVETISYCVFAA  134 (422)
Q Consensus        55 gls~~~~g~i~~i~~l~~ai~~p~~G~lsDr~Grrrp~ll~g~i~~~i~~~~lf~~~~p~~~~~~~~~~~~~~~~~~~~~  134 (422)
                      |+++.+.|.+.+...+...+..++.|+++||+||||. +..+.+..+++..+...       ....+.    ...++.++
T Consensus        72 ~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~-l~~~~~~~~~~~~~~~~-------~~~~~~----~~l~~~r~  139 (465)
T TIGR00894        72 KWSGALQGLILSSHFYGQIIIQIPVGYLAGKYVFKWS-IGIGMFLSSVISIVIPW-------AAGGGI----ALVVFCRV  139 (465)
T ss_pred             CCCHHHhhHHHHHHHHHHHHHHcchHHHHHHhCcchh-hHHHHHHHHHHHHHHHH-------HHHcCc----hHHHHHHH
Confidence            6888999999999999999999999999999999987 55566666655443211       001111    12233345


Q ss_pred             HHHHHHHHHHhhhhhhhhhccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchH-HHHHHHHHHHHHHH
Q 014600          135 IFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLE-NQYRWIAYSSIFIG  213 (422)
Q Consensus       135 l~~~~~~~~~~p~~al~~~~t~~~~eR~~l~~~~~~~~~ig~~l~~~~~~~l~~~~~~~g~~~~~-~~~~~~~~i~~~i~  213 (422)
                      +.+++.+.......++.+++.+ ++||++..++...+..+|..+++.+...+..          . .+|++.+++.++++
T Consensus       140 ~~G~~~~~~~~~~~~~~~~~~~-~~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~----------~~~gw~~~f~i~~~~~  208 (465)
T TIGR00894       140 IQGLAQGSVSPATHKIIVKWAP-PKERSRLLGMSTSGFQLGTFIFLPISGWLCE----------SWGGWPMIFYVFGIVG  208 (465)
T ss_pred             HHHHhcccchhhHHHHHHhcCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------ccCCCCeehhhhhHHH
Confidence            7888888888888899999986 6899999999998888888887766544332          2 27888888888877


Q ss_pred             HHHHhhhhccccCccccccc--------------CC--CcchhhhHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHh
Q 014600          214 CCFVGIFLSRTEEPRLKMGL--------------RG--NSHARISWAYWFKKILYYQVALVYMLTRLVVNVSQAYLAFYV  277 (422)
Q Consensus       214 ~i~~~i~~~~~~E~~~~~~~--------------~~--~~~~~~~~~~~~~n~~f~~~~~~~~~~~~~~~~~~~y~~~y~  277 (422)
                      ++..++.+...+|++.++++              ++  +.+.+..+++++++|+++...+.+++..........|+|.|+
T Consensus       209 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l  288 (465)
T TIGR00894       209 CAWSLLWFVFPADDPSIHPCISKFEKKYINSSLQGQKGSTRQSLPIKAIPKSLPVWAIWFAIFGHFWLYTILPTYLPTFI  288 (465)
T ss_pred             HHHHHHHHHHhcCCcccCCCCCHHHHHHHHhhcccccCCCCCCCCHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            77766666666664422110              00  111233588999999998888888887777788889999999


Q ss_pred             hhccCccchh
Q 014600          278 INDLRMGQSA  287 (422)
Q Consensus       278 ~~~~~l~~~~  287 (422)
                      .+..+.+...
T Consensus       289 ~~~~g~s~~~  298 (465)
T TIGR00894       289 SWVLRVSGKE  298 (465)
T ss_pred             HHHhCcChHH
Confidence            9887776543

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.69  E-value=3e-14  Score=140.66  Aligned_cols=296  Identities=14%  Similarity=0.063  Sum_probs=174.0

Q ss_pred             HHHHHHHHh---CCChhHHHHHHHH-----HHHHhhhhhhhhhhhhcccCCchhHHHHHHHHHHHHHHHhhcCccCcccc
Q 014600           46 YLLLFLTDI---GLSPRGAAAVMLS-----GQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRIL  117 (422)
Q Consensus        46 ~l~~f~t~~---gls~~~~g~i~~i-----~~l~~ai~~p~~G~lsDr~Grrrp~ll~g~i~~~i~~~~lf~~~~p~~~~  117 (422)
                      +..+++.+.   +.+..+.+.+...     ..+...+..|+.|+++||+||||.+ +.+.++..++..+...  .|    
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l-~~~~~~~~~~~~~~~~--~~----   86 (394)
T TIGR00883        14 FAAVLVFHTFFPPSGDPLVALLATFATFAAGFLARPLGAIVFGHFGDRIGRKKTL-VITLLMMGIGTLLIGL--LP----   86 (394)
T ss_pred             HHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhhhHHHH-HHHHHHHHHHHHHHhh--CC----
Confidence            445555543   2445666665543     3344456789999999999999985 4677777776554432  12    


Q ss_pred             CCccc--hhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCC
Q 014600          118 STSTL--KVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTH  195 (422)
Q Consensus       118 ~~~~~--~~~~~~~~~~~~l~~~~~~~~~~p~~al~~~~t~~~~eR~~l~~~~~~~~~ig~~l~~~~~~~l~~~~~~~g~  195 (422)
                       +...  .+....+++.+.+.+++.+....+..++..|..+ +++|++..+.+..+..+|.++++.+...+...++..  
T Consensus        87 -~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~-~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~--  162 (394)
T TIGR00883        87 -SYATIGIWAPILLLLARLIQGFSLGGEWGGAALYLAEYAP-PGKRGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDD--  162 (394)
T ss_pred             -ChhhhHHHHHHHHHHHHHHHHhhccccccccHHHhhhcCC-cccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHH--
Confidence             1110  1111223333456777777777778889999876 689999999999999999888877654443322110  


Q ss_pred             CchHHHHHHHHHHHHHHHHHHHhhhhccccCccccccc-CCCcchhhhHHHHHHhHH--HHHHHHHHHHHHHHHHhhhHH
Q 014600          196 ADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGL-RGNSHARISWAYWFKKIL--YYQVALVYMLTRLVVNVSQAY  272 (422)
Q Consensus       196 ~~~~~~~~~~~~i~~~i~~i~~~i~~~~~~E~~~~~~~-~~~~~~~~~~~~~~~n~~--f~~~~~~~~~~~~~~~~~~~y  272 (422)
                      .....+|++.+.+.+++.+++.. .....+|++..+++ +++++.++.+++.+||++  ++......++..........+
T Consensus       163 ~~~~~~w~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (394)
T TIGR00883       163 ALLEWGWRIPFLVSAVLVLIGLY-LRRNLEETPVFEKAQEKHKKKRGPIRETLTKHRKPFLLGLGLVIATTTTFYLITTY  241 (394)
T ss_pred             HhhccchHHHHHHHHHHHHHHHH-HHHhcCCChhHHHHHhccccccCCHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            00134788887776655554433 23345554422111 112223445677788766  555556666666666677889


Q ss_pred             HHHHhhhccCccchhHhH------------HHHHH-----------HH-HHH---HHH-----HHH---H---------H
Q 014600          273 LAFYVINDLRMGQSAKAL------------VPAII-----------YI-CSF---IVS-----ILL---Q---------V  308 (422)
Q Consensus       273 ~~~y~~~~~~l~~~~~~~------------iP~~~-----------~~-~~~---~~~-----~~~---~---------v  308 (422)
                      .|.|..++.+.+......            .|...           .. .+.   +..     ...   .         +
T Consensus       242 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  321 (394)
T TIGR00883       242 LPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLMALLDSGSFTLFFFLVLG  321 (394)
T ss_pred             HHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHH
Confidence            999998777765543210            01100           00 000   000     000   0         0


Q ss_pred             HH----------hhhhhhhhcCccccccceehh-hHHHHHHHHHHHHHHHHHhHhhCC
Q 014600          309 TG----------ISMQNVLVGEDLSGCAFVCGT-LSFLDKMSCGIAVYVLQSYQSMSP  355 (422)
Q Consensus       309 ~~----------~~~~~~~~g~r~~g~~~~~s~-~~~~~K~~~a~~~~i~g~~l~~~G  355 (422)
                      .+          ..+..+.+.++..+.  .++. .++...+|..+++.+.|++.+..|
T Consensus       322 ~g~~~~~~~~~~~~~~~~~~p~~~~~~--~~~~~~~~~~~~g~~~~p~~~g~l~~~~g  377 (394)
T TIGR00883       322 LALIGGMYTGPMGSFLPELFPTEVRYT--GASLAYNLAGAIFGGFAPYIAAALVAMTG  377 (394)
T ss_pred             HHHHHHHHhhhHHHHHHHhCCccceee--EeeehhHhHHHHHhhHHHHHHHHHHHHcC
Confidence            00          122345566677777  7776 467778899999999999998876

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=99.69  E-value=8.5e-15  Score=144.76  Aligned_cols=224  Identities=12%  Similarity=0.049  Sum_probs=157.9

Q ss_pred             HHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHhhhhhhhhhhhhcccCCchhHHHHHHHHHHHHHHHhhcCccCccccC
Q 014600           39 TAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILS  118 (422)
Q Consensus        39 ~~~~~~~~l~~f~t~~gls~~~~g~i~~i~~l~~ai~~p~~G~lsDr~Grrrp~ll~g~i~~~i~~~~lf~~~~p~~~~~  118 (422)
                      ...++.+.++.+.++.|+++.++|.+.++..+..++..|+.|+++||+||||. +..+.+..+++..++..       .+
T Consensus         6 ~~~~~~p~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~-~~~~~~~~~i~~~~~~~-------~~   77 (377)
T PRK11102          6 AIDMYLPALPVIAADFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPV-ILGGTLVFALAAVACAL-------AQ   77 (377)
T ss_pred             HHHHHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChHH-HHHHHHHHHHHHHHHHH-------Hc
Confidence            34456677788888789999999999999999999999999999999998766 66777777776655432       11


Q ss_pred             CccchhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCch
Q 014600          119 TSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADL  198 (422)
Q Consensus       119 ~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~al~~~~t~~~~eR~~l~~~~~~~~~ig~~l~~~~~~~l~~~~~~~g~~~~  198 (422)
                      +  .+    ...+...+.+++.+...++..++..|..+ +++|++..++.+....+|..+++.++..+.+          
T Consensus        78 ~--~~----~~~~~~~l~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~----------  140 (377)
T PRK11102         78 T--ID----QLIYMRFLHGLAAAAASVVINALMRDMFP-KEEFSRMMSFVTLVMTIAPLLAPIIGGWLLV----------  140 (377)
T ss_pred             c--HH----HHHHHHHHHHHHHHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------
Confidence            1  11    12223346788888888889999999875 6789999999988888888887766654443          


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhccccCcccccccCCC--cchhhhHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 014600          199 ENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGN--SHARISWAYWFKKILYYQVALVYMLTRLVVNVSQAYLAFY  276 (422)
Q Consensus       199 ~~~~~~~~~i~~~i~~i~~~i~~~~~~E~~~~~~~~~~--~~~~~~~~~~~~n~~f~~~~~~~~~~~~~~~~~~~y~~~y  276 (422)
                      ..+|++.+.+.+.+.++..++..+..||++.++++++.  ++..+.+++.+|||+++...+...+..........+.|.|
T Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  220 (377)
T PRK11102        141 WFSWHAIFWVLALAAILAAALVFFFIPETLPKERRQPFHLRTTIRNFASLFRHKRVLGYMLASGFSFAGMFSFLTAGPFV  220 (377)
T ss_pred             HcChHHHHHHHHHHHHHHHHHHHHhCCccCcccccCCCChHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHcCHHH
Confidence            23788888877777777666666667775432221111  1223456678899987766655555555555556667777


Q ss_pred             hhhccCccchh
Q 014600          277 VINDLRMGQSA  287 (422)
Q Consensus       277 ~~~~~~l~~~~  287 (422)
                      +.+..+.++..
T Consensus       221 ~~~~~g~s~~~  231 (377)
T PRK11102        221 YIELNGVSPQN  231 (377)
T ss_pred             HHHHhCCCHHH
Confidence            77766766544

>PRK03699 putative transporter; Provisional

Probab=99.69  E-value=3.9e-14  Score=141.36  Aligned_cols=219  Identities=11%  Similarity=0.002  Sum_probs=134.8

Q ss_pred             HHHHHHHHHHHHHhCCChhHHHHHHHHHHHHhhhhhhhhhhhhcccCCchhHHHHHHHHHHHHHHHhhcCccCccccCCc
Q 014600           41 ACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTS  120 (422)
Q Consensus        41 ~~~~~~l~~f~t~~gls~~~~g~i~~i~~l~~ai~~p~~G~lsDr~Grrrp~ll~g~i~~~i~~~~lf~~~~p~~~~~~~  120 (422)
                      ......++....+.|+|..++|.+.+...+...+..++.|+++||+||||. +..+.+..+++..++..       .+  
T Consensus        24 ~~~g~~~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~g~r~~-~~~~~~~~~i~~~l~~~-------~~--   93 (394)
T PRK03699         24 IVTGMVMGPIAEYFNLPVSSMSNTFTFLNAGILISIFLNAWLMEIIPLKRQ-LIFGFALMILAVAGLMF-------SH--   93 (394)
T ss_pred             HHHhhhhHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH-HHHHHHHHHHHHHHHHH-------cc--
Confidence            344455566555559999999999999999999999999999999999987 45666666666544321       11  


Q ss_pred             cchhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchHH
Q 014600          121 TLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLEN  200 (422)
Q Consensus       121 ~~~~~~~~~~~~~~l~~~~~~~~~~p~~al~~~~t~~~~eR~~l~~~~~~~~~ig~~l~~~~~~~l~~~~~~~g~~~~~~  200 (422)
                      +.+    .+.+...+.+++.+.......+++.+..+ +++|++..+..+....+|+.+++.+...++..         ..
T Consensus        94 ~~~----~~~~~~~l~G~~~g~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~---------~~  159 (394)
T PRK03699         94 SLA----LFSIAMFVLGVVSGITMSIGTFLITHVYE-GKQRGSRLLFTDSFFSMAGMIFPIIAAYLLAR---------SI  159 (394)
T ss_pred             hHH----HHHHHHHHHHHhhHhhccchhHHhhhhcc-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---------cc
Confidence            111    12222345666666666667788888875 56888888777666677766666554433321         23


Q ss_pred             HHHHHHHHHHHHHHHHHhhhhccccCcccccccCCCcchhhhHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhc
Q 014600          201 QYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISWAYWFKKILYYQVALVYMLTRLVVNVSQAYLAFYVIND  280 (422)
Q Consensus       201 ~~~~~~~i~~~i~~i~~~i~~~~~~E~~~~~~~~~~~~~~~~~~~~~~n~~f~~~~~~~~~~~~~~~~~~~y~~~y~~~~  280 (422)
                      +||+.+.+.+++.++..++.++ .+.++.+++++++ + ++..+. ..+++++...+..++..........|.|.|..+.
T Consensus       160 gw~~~f~~~~~~~~~~~~~~~~-~~~p~~~~~~~~~-~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~  235 (394)
T PRK03699        160 EWYWVYACIGLVYVAIFILTLF-SEFPALGKHAPKA-D-KPVAKE-KWGIGVLFLAIAALLYILAQLTFISWVPEYAQKK  235 (394)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHh-cCCccccccCccc-c-Cccccc-cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7888888777666554443332 2211111111100 0 111111 1245555555555555555567788999999888


Q ss_pred             cCccchh
Q 014600          281 LRMGQSA  287 (422)
Q Consensus       281 ~~l~~~~  287 (422)
                      .+++...
T Consensus       236 ~g~s~~~  242 (394)
T PRK03699        236 FGMSLED  242 (394)
T ss_pred             cCCChHH
Confidence            7776543

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.69  E-value=2.2e-14  Score=142.56  Aligned_cols=230  Identities=12%  Similarity=-0.015  Sum_probs=142.9

Q ss_pred             ccchhHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHhhhhhhhhhhhhcccCCchhHHHHHHHHHHHHHHHhhcC
Q 014600           31 SGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGG  110 (422)
Q Consensus        31 ~g~~~~~~~~~~~~~~l~~f~t~~gls~~~~g~i~~i~~l~~ai~~p~~G~lsDr~Grrrp~ll~g~i~~~i~~~~lf~~  110 (422)
                      .+.+.....+.+..+|+|.|++|.|.|..++|++.++..+...+..|++|.++||+|||+...........+....+.. 
T Consensus        11 ~~~~~~~~~~~~~~p~l~~~l~~~g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~l~~~~~~~-   89 (382)
T TIGR00902        11 LGFFGYFCAYGIFLPFFPAWLKGIGLGEEMIGLLIGAALIARFAGGLFFAPLIKDANHIIIALRLLALASAIFAAAFSA-   89 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHH-
Confidence            3445555666778899999998889999999999999999999999999999999998654322222222111111110 


Q ss_pred             ccCccccCCccchhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 014600          111 CMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVS  190 (422)
Q Consensus       111 ~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~al~~~~t~~~~eR~~l~~~~~~~~~ig~~l~~~~~~~l~~~~  190 (422)
                           .+  .+.+.    .++...+.+.+++.......++..+.   ++||++..+.......+|.++++.+++.+.+. 
T Consensus        90 -----~~--~~~~~----l~~~~~l~~~~~~~~~p~~~al~~~~---~~~~~~~~g~~~~~~slG~~~g~~l~g~l~~~-  154 (382)
T TIGR00902        90 -----GA--HNAWL----LFIAIGLFALFFSAGMPIGDALANTW---QKQFGLDYGKVRLIGSAAFIIGSALFGGLIGM-  154 (382)
T ss_pred             -----hh--hhHHH----HHHHHHHHHHHHccchhHHHHHHHHH---HHHcCCCccHHHHHHHHHHHHHHHHHHHHHHH-
Confidence                 01  11221    11222345666665555555665442   45677777777777788888877666555542 


Q ss_pred             cCCCCCchHHHHHHHHHHHHHHHHHHHhhhhccccCcccccc-cCCCcchhhhHHHHHHhHHHHHHHHHHHHHHHHHHhh
Q 014600          191 TAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMG-LRGNSHARISWAYWFKKILYYQVALVYMLTRLVVNVS  269 (422)
Q Consensus       191 ~~~g~~~~~~~~~~~~~i~~~i~~i~~~i~~~~~~E~~~~~~-~~~~~~~~~~~~~~~~n~~f~~~~~~~~~~~~~~~~~  269 (422)
                               .+|+..+.+...+..+ .++.+...++.+.+++ ++++.+..+.+++++|||+++.+.+..++.+.+....
T Consensus       155 ---------~g~~~~f~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~l~~~~~~~~  224 (382)
T TIGR00902       155 ---------FDEQNILAILTAGLAF-MLIGFLIKPTIPPKDAIPEDESQGDSAFIALLKNPMNLRFLAAVCLIQGAHAAY  224 (382)
T ss_pred             ---------cChhHHHHHHHHHHHH-HHHHHHcCCCCCCCccccccccccchhHHHHHcChHHHHHHHHHHHHHHHHHHH
Confidence                     3677766655443222 2222332232111111 1111122345678999999988887777777778788


Q ss_pred             hHHHHHHhhhccCccchh
Q 014600          270 QAYLAFYVINDLRMGQSA  287 (422)
Q Consensus       270 ~~y~~~y~~~~~~l~~~~  287 (422)
                      .++.+.|+++ .|.+...
T Consensus       225 ~~~~~~~l~~-~g~s~~~  241 (382)
T TIGR00902       225 YGFSAIYWQA-AGISASA  241 (382)
T ss_pred             HHHHHHHHHH-CCCCHhH
Confidence            8899999976 6776644

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.69  E-value=4.4e-14  Score=140.31  Aligned_cols=226  Identities=15%  Similarity=0.080  Sum_probs=141.5

Q ss_pred             eeeeccchhHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHhhhhhhhhhhhhcccCCchhHHHHHHHHHHHHHHH
Q 014600           27 LYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSS  106 (422)
Q Consensus        27 ~~y~~g~~~~~~~~~~~~~~l~~f~t~~gls~~~~g~i~~i~~l~~ai~~p~~G~lsDr~Grrrp~ll~g~i~~~i~~~~  106 (422)
                      .....+.+...+......+++|.|..+.|.|..++|++.+...+...+..|+.|+++||+||||.+ ..+.+..+++...
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~g~k~~~-~~~~~~~~~~~~~   87 (381)
T PRK03633          9 LLLLCGLLLLTLAIAVLNTLVPLWLAQEHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRIGFNRSY-YLASLIFAAGCAG   87 (381)
T ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence            334456667777778888999999998899999999999999999999999999999999999985 4567777666544


Q ss_pred             hhcCccCccccCCccchhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCccchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 014600          107 VFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIV  186 (422)
Q Consensus       107 lf~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~al~~~~t~~~~eR~~l~~~~~~~~~ig~~l~~~~~~~l  186 (422)
                      ...       .+  +.+    .+.+..++.+++.+...++..+...+..+ +++|++..+..+...++|..+++.++..+
T Consensus        88 ~~~-------~~--~~~----~l~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~g~~~~~~l  153 (381)
T PRK03633         88 LGL-------MV--GFW----SWLAWRFVAGIGCAMIWVVVESALMCSGT-SRNRGRLLAAYMMVYYLGTVLGQLLVSKV  153 (381)
T ss_pred             HHH-------hc--cHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            321       11  122    12223356777777766666666667665 56899999988888888888777665444


Q ss_pred             HhhccCCCCCchHHHHHHHHHHHHHHHHHHHhhhhccccCcccccccCCCcchhhhHHHHHHhHHHHHHHHHHHHHHHHH
Q 014600          187 FSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISWAYWFKKILYYQVALVYMLTRLVV  266 (422)
Q Consensus       187 ~~~~~~~g~~~~~~~~~~~~~i~~~i~~i~~~i~~~~~~E~~~~~~~~~~~~~~~~~~~~~~n~~f~~~~~~~~~~~~~~  266 (422)
                      .....      +...|.....     ......+.+...+|+  +++ ++   ..++.++.+|||.++......++.....
T Consensus       154 ~~~~~------~~~~~~~~~~-----~~~~~~~~~~~~~~~--~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~  216 (381)
T PRK03633        154 STELM------SVLPWVTGLV-----LAAILPLLFTRILNQ--QAE-NH---DSTSIWPMLKLRQARLGVNGCIISGIVL  216 (381)
T ss_pred             ccccc------chHHHHHHHH-----HHHHHHHHHhcccCC--CCC-CC---CCCCHHHHHHhcchHHHHHHHHHHHHHH
Confidence            32110      1123332111     111111112122221  111 11   1234567789998775443333333444


Q ss_pred             HhhhHHHHHHhhhccCccc
Q 014600          267 NVSQAYLAFYVINDLRMGQ  285 (422)
Q Consensus       267 ~~~~~y~~~y~~~~~~l~~  285 (422)
                      .....++|.|..+. +.+.
T Consensus       217 ~~~~~~lp~~~~~~-g~s~  234 (381)
T PRK03633        217 GSLYGLMPLYLNHQ-GMSD  234 (381)
T ss_pred             HHHHHHHHHHHHHc-CCCH
Confidence            55667888888764 5544

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=99.69  E-value=1.3e-13  Score=139.25  Aligned_cols=228  Identities=10%  Similarity=0.079  Sum_probs=142.4

Q ss_pred             HHHHHHHHHHh-C---CChh---HHHHHHHHHHHHhhhhhhhhhhhhcccCCchhHHHHHHHHHHHHHHHhhcCccCccc
Q 014600           44 FTYLLLFLTDI-G---LSPR---GAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRI  116 (422)
Q Consensus        44 ~~~l~~f~t~~-g---ls~~---~~g~i~~i~~l~~ai~~p~~G~lsDr~Grrrp~ll~g~i~~~i~~~~lf~~~~p~~~  116 (422)
                      .+++..++.+. +   .+..   +.+.++...-+...+..++.|+++||+||||. +..+....+++..+...  .|   
T Consensus        41 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~Grr~~-l~~~~~~~~~~~~~~~~--~~---  114 (432)
T PRK10406         41 YSFCSLYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADKHGRKKS-MLISVCMMCFGSLVIAC--LP---  114 (432)
T ss_pred             HHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHH-HHHHHHHHHHHHHHHhh--cC---
Confidence            34555555554 3   4444   34555666666666899999999999999998 55677777776655321  12   


Q ss_pred             cCCccc--hhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCCC
Q 014600          117 LSTSTL--KVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKT  194 (422)
Q Consensus       117 ~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~p~~al~~~~t~~~~eR~~l~~~~~~~~~ig~~l~~~~~~~l~~~~~~~g  194 (422)
                        +...  .+....+++.+++.+++.+.......++++|..+ +++|++..+....+...|.+++..+...+...+.+. 
T Consensus       115 --~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p-~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~-  190 (432)
T PRK10406        115 --GYETIGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAV-EGRKGFYASFQYVTLIGGQLLALLVVVVLQQTLEDA-  190 (432)
T ss_pred             --CchhHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCC-CCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHH-
Confidence              1111  1112234445567888888777788899999986 688999988888777777777665543332222100 


Q ss_pred             CCchHHHHHHHHHHHHHHHHHHHhhhhccccCcccccccCCCcchhhhHHHHHHhHHHHHHHHHHHH-HHHHHHhhhHHH
Q 014600          195 HADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISWAYWFKKILYYQVALVYML-TRLVVNVSQAYL  273 (422)
Q Consensus       195 ~~~~~~~~~~~~~i~~~i~~i~~~i~~~~~~E~~~~~~~~~~~~~~~~~~~~~~n~~f~~~~~~~~~-~~~~~~~~~~y~  273 (422)
                       .-...+||+.+.+.++++++..+ .....+|.+.++++  +.+.+.++++++|||+++.......+ .........+|+
T Consensus       191 -~~~~~gWr~~F~i~~~~~ll~~~-~~~~~~e~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l  266 (432)
T PRK10406        191 -ELREWGWRIPFALGAVLAVVALW-LRRQLDETSQQETR--ALKEAGSLKGLWRNRRAFIMVLGFTAAGSLCFYTFTTYM  266 (432)
T ss_pred             -HHhccchHHHHHHHHHHHHHHHH-HHhcCCCCchHHHh--hhcccccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             00135899999887776665432 23445664332211  11123357888999987665544443 355566778899


Q ss_pred             HHHhhhccCccc
Q 014600          274 AFYVINDLRMGQ  285 (422)
Q Consensus       274 ~~y~~~~~~l~~  285 (422)
                      |.|+.+..+.+.
T Consensus       267 p~~l~~~~g~s~  278 (432)
T PRK10406        267 QKYLVNTAGMHA  278 (432)
T ss_pred             HHHHHHhcCCCH
Confidence            999988777654

>PRK10133 L-fucose transporter; Provisional

Probab=99.68  E-value=1.5e-13  Score=139.28  Aligned_cols=273  Identities=12%  Similarity=-0.009  Sum_probs=162.3

Q ss_pred             ccccccccCCCCCCCCCCCCceeeeeeeccchhHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHhhhhhhhhhhh
Q 014600            3 SSTVMNYDIENDDSFTQPVGRWSVLYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGEL   82 (422)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~l~~~~~~~y~~g~~~~~~~~~~~~~~l~~f~t~~gls~~~~g~i~~i~~l~~ai~~p~~G~l   82 (422)
                      |-..-++|.-++|...++-..........-.+...+.......++|.+..+.|+++.+.|++.+...+..++..|+.|++
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l   84 (438)
T PRK10133          5 SIQTQSYRAVDKDAGQSRSYIIPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGIL   84 (438)
T ss_pred             ccchhhhhccCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344566666554232222222222333334445555555566676644459999999999999999999999999999


Q ss_pred             hcccCCchhHHHHHHHHHHHHHHHhhcCccCccccCCccchhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCccchh
Q 014600           83 IDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRV  162 (422)
Q Consensus        83 sDr~Grrrp~ll~g~i~~~i~~~~lf~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~al~~~~t~~~~eR~  162 (422)
                      +||+||||. +..+..+.+++..+..    |...++  +.    ..+++...+.+++.+..+++.++++.+.. ++++|.
T Consensus        85 ~dr~G~r~~-l~~g~~~~~~~~~l~~----~~~~a~--~~----~~ll~~r~l~G~g~g~~~~~~~~~v~~~~-~~~~~~  152 (438)
T PRK10133         85 MKKLSYKAG-IITGLFLYALGAALFW----PAAEIM--NY----TLFLVGLFIIAAGLGCLETAANPFVTVLG-PESSGH  152 (438)
T ss_pred             HHHhCcHHH-HHHHHHHHHHHHHHHH----HHHhcC--CH----HHHHHHHHHHHHHHHHHHhhHHHHHHHhC-ChhhHH
Confidence            999999988 6678888887765431    100111  11    12233345788889999999999998874 456676


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhhc-cC--------CCCC---chH----HHHHHHHHHHH-HHHHHHHhhhhcccc
Q 014600          163 VLTSCRNAFTMVANLSLYAIAFIVFSVS-TA--------KTHA---DLE----NQYRWIAYSSI-FIGCCFVGIFLSRTE  225 (422)
Q Consensus       163 ~l~~~~~~~~~ig~~l~~~~~~~l~~~~-~~--------~g~~---~~~----~~~~~~~~i~~-~i~~i~~~i~~~~~~  225 (422)
                      +..+..+....+|..+++.++.++.... +.        ...+   .++    .+|++.+.... +..++..++.+...|
T Consensus       153 ~~~s~~~~~~~~G~~~g~~~g~~l~~~~~~~~~~~~~~~l~~~~~~~w~~~~~~~w~~~f~~~~~v~~~~~~~~~~~~~p  232 (438)
T PRK10133        153 FRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMTPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFP  232 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchhhhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            6677777788888888887776654211 00        0000   011    24555554322 333333333333344


Q ss_pred             CcccccccC-CCcchhhhHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHh-hhccCccchh
Q 014600          226 EPRLKMGLR-GNSHARISWAYWFKKILYYQVALVYMLTRLVVNVSQAYLAFYV-INDLRMGQSA  287 (422)
Q Consensus       226 E~~~~~~~~-~~~~~~~~~~~~~~n~~f~~~~~~~~~~~~~~~~~~~y~~~y~-~~~~~l~~~~  287 (422)
                      |.+.+++++ ++.+..+..++++|||.++...+..++..........|.+.|+ ++..++++..
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~g~s~~~  296 (438)
T PRK10133        233 ALQSDNHSDAKQGSFSASLSRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGF  296 (438)
T ss_pred             CCCccccccccccchhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCHHH
Confidence            432211111 1122345567889999987655555555555556677888886 4556777654

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=99.68  E-value=4e-14  Score=140.74  Aligned_cols=227  Identities=10%  Similarity=-0.000  Sum_probs=140.5

Q ss_pred             chhHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHhhhhhhhhhhhhcccCCchhHHHHHHHHHHHHHHHhhcCcc
Q 014600           33 HMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCM  112 (422)
Q Consensus        33 ~~~~~~~~~~~~~~l~~f~t~~gls~~~~g~i~~i~~l~~ai~~p~~G~lsDr~Grrrp~ll~g~i~~~i~~~~lf~~~~  112 (422)
                      .++.....++..++++.|++|.|.|+.++|++.++..+...+..|+.|.++||+|||+.......+...+...++..   
T Consensus        13 ~~~~~~~~g~~~p~l~~~l~~~g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~---   89 (382)
T PRK11128         13 YFGYFFAYGVFLPFWSVWLKGQGYTPETIGLLLGAGLVARFLGSLLIAPRVKDPSQLIPALRLLALLTLLFAVAFWF---   89 (382)
T ss_pred             HHHHHHHHHHHhhhHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHH---
Confidence            44455666778889999999889999999999999999999999999999999999533221111111111111111   


Q ss_pred             CccccCCccchhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 014600          113 PCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTA  192 (422)
Q Consensus       113 p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~al~~~~t~~~~eR~~l~~~~~~~~~ig~~l~~~~~~~l~~~~~~  192 (422)
                          . ..+.+ .   .++...+.+.+.+.......++..+.   .++|++..+.....+.+|..+++.+++.+.+.   
T Consensus        90 ----~-~~~~~-~---l~i~~~l~g~~~~~~~~~~~a~~~~~---~~~~~~a~~~~~~~~~lg~~igp~lgg~l~~~---  154 (382)
T PRK11128         90 ----G-AHSFW-L---LFVAIGLFNLFFSPLVPLTDALANTW---QKQIGLDYGKVRLWGSIAFVIGSALTGKLVSW---  154 (382)
T ss_pred             ----h-cccHH-H---HHHHHHHHHHHHcccccHHHHHHHHH---HhhccCCcchHHHHHHHHHHHHHHHHHHHHHH---
Confidence                0 11122 1   11223345666666655566676665   34577767767777778888777766655442   


Q ss_pred             CCCCchHHHHHHHHHHHHHHHHHHHhhhhccccCccccccc-CCCcchhhhHHHHHHhHHHHHHHHHHHHHHHHHHhhhH
Q 014600          193 KTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGL-RGNSHARISWAYWFKKILYYQVALVYMLTRLVVNVSQA  271 (422)
Q Consensus       193 ~g~~~~~~~~~~~~~i~~~i~~i~~~i~~~~~~E~~~~~~~-~~~~~~~~~~~~~~~n~~f~~~~~~~~~~~~~~~~~~~  271 (422)
                             .+|+..+++.++..++.. ++.+..||++.++++ +++++..+.+++++|||+++......++.+.......+
T Consensus       155 -------~g~~~~f~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~  226 (382)
T PRK11128        155 -------FGEQAILWILTAGVASML-LGQLLRPTIMPQGESRQQESAGWPAWKALLKEPTVWRFLLCVSLLQGSHAAYYG  226 (382)
T ss_pred             -------cChhHHHHHHHHHHHHHH-HHHHccCCCCCccccccccccccchHHHHHcChhHHHHHHHHHHHHHHhHhHHH
Confidence                   367776665554333332 233344553222111 11112245678999999998877766666666666778


Q ss_pred             HHHHHhhhccCccch
Q 014600          272 YLAFYVINDLRMGQS  286 (422)
Q Consensus       272 y~~~y~~~~~~l~~~  286 (422)
                      +.+.|..+ .+.+..
T Consensus       227 ~~~~~~~~-~g~s~~  240 (382)
T PRK11128        227 FSAIYWQA-AGYSAS  240 (382)
T ss_pred             HHHHHHHH-CCCCHh
Confidence            88888865 566543

>TIGR00895 2A0115 benzoate transport

Probab=99.68  E-value=2.5e-15  Score=148.72  Aligned_cols=163  Identities=14%  Similarity=0.067  Sum_probs=113.7

Q ss_pred             HHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHhhhhhhhhhhhhcccCCchhHHHHHHHHHHHHHHHhhcCccCccccCC
Q 014600           40 AACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILST  119 (422)
Q Consensus        40 ~~~~~~~l~~f~t~~gls~~~~g~i~~i~~l~~ai~~p~~G~lsDr~Grrrp~ll~g~i~~~i~~~~lf~~~~p~~~~~~  119 (422)
                      ......+.+.+.++.|.++.++|++.++..+...+..|+.|+++||+||||. +..+.++.+++..++..       .+ 
T Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~-~~~~~~~~~~~~~~~~~-------~~-  103 (398)
T TIGR00895        33 LAAMGFAAPAISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRKRV-LLWSILLFSVFTLLCAL-------AT-  103 (398)
T ss_pred             HHHHHhhHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHH-HHHHHHHHHHHHHHHHH-------cc-
Confidence            3334444455555559999999999999999999999999999999998876 55676666666554432       11 


Q ss_pred             ccchhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchH
Q 014600          120 STLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLE  199 (422)
Q Consensus       120 ~~~~~~~~~~~~~~~l~~~~~~~~~~p~~al~~~~t~~~~eR~~l~~~~~~~~~ig~~l~~~~~~~l~~~~~~~g~~~~~  199 (422)
                       +.+    .+.+...+.+++.+....+..++..|..+ +++|++..++......+|..+++.+.+.+.+.          
T Consensus       104 -~~~----~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~----------  167 (398)
T TIGR00895       104 -NVT----QLLILRFLAGLGLGGLMPNLNALVSEYAP-KRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPV----------  167 (398)
T ss_pred             -chH----HHHHHHHHHhcccccchhhHHHHHHHHcC-HHhhchhHhhHhhHHHHHHHHHHHHHHHHhhc----------
Confidence             111    12222346777778888888999999876 57899999998888888888887666554432          


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhccccCc
Q 014600          200 NQYRWIAYSSIFIGCCFVGIFLSRTEEP  227 (422)
Q Consensus       200 ~~~~~~~~i~~~i~~i~~~i~~~~~~E~  227 (422)
                      .+|++.+.+.+++..+..++.+...||+
T Consensus       168 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (398)
T TIGR00895       168 FGWRSLFYVGGIAPLLLLLLLMRFLPES  195 (398)
T ss_pred             ccceeehhhhhhHHHHHHHHHHHhCCCC
Confidence            3667666666555555555555555654

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.67  E-value=1.9e-14  Score=146.55  Aligned_cols=285  Identities=12%  Similarity=0.003  Sum_probs=173.1

Q ss_pred             HHHHHHHHHhCCChhHHHHHHHHHHHHhhhhhhhhhhhhcccCCchhHHHHHHHHHHHHHHHhhcCccCccccCCccchh
Q 014600           45 TYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKV  124 (422)
Q Consensus        45 ~~l~~f~t~~gls~~~~g~i~~i~~l~~ai~~p~~G~lsDr~Grrrp~ll~g~i~~~i~~~~lf~~~~p~~~~~~~~~~~  124 (422)
                      .+++.+..+.|.+..+++++.....+...+..|+.|+++||+||||. ++.+.+..+++.+++-       +.+  +.+ 
T Consensus        40 ~~~~~i~~~~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~g~r~~-l~~~~~~~~~~~~~~~-------~~~--~~~-  108 (455)
T TIGR00892        40 VFFKELQQIFQATYSETAWISSIMLAVLYAGGPISSILVNRFGCRPV-VIAGGLLASLGMILAS-------FSS--NVI-  108 (455)
T ss_pred             hhHHHHHHHhCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHcCchHH-HHhhHHHHHHHHHHHH-------Hhh--hHH-
Confidence            34555555559999999999999999999999999999999999886 5566666666554431       111  111 


Q ss_pred             hhHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchHHHHHH
Q 014600          125 ETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYRW  204 (422)
Q Consensus       125 ~~~~~~~~~~l~~~~~~~~~~p~~al~~~~t~~~~eR~~l~~~~~~~~~ig~~l~~~~~~~l~~~~~~~g~~~~~~~~~~  204 (422)
                      .  .+....++.+++.+....|..+++.++.  +++|++..++.+.+..+|..+++.+.+.+.+          ..+|++
T Consensus       109 ~--l~~~~~~l~G~~~~~~~~~~~~~~~~~~--~~~r~~a~g~~~~~~~~g~~~~~~l~~~l~~----------~~gwr~  174 (455)
T TIGR00892       109 E--LYLTAGFITGLGLAFNFQPSLTMLGKYF--YRRRPLANGLAMAGSPVFLSTLAPLNQYLFE----------SFGWRG  174 (455)
T ss_pred             H--HHHHHHHHHHhcchhhhhHHHHHHHHHH--HhhHHHHHHHHHhcccHHHHHHHHHHHHHHH----------HhChHH
Confidence            1  1111123456666655566677788876  4789999999888888888776655444432          347999


Q ss_pred             HHHHHHHHHHHHHhhhhccccCccc----ccc--c--C-C-C--c----chhh---hH--HHHHHhHHHHHHHHHHHHHH
Q 014600          205 IAYSSIFIGCCFVGIFLSRTEEPRL----KMG--L--R-G-N--S----HARI---SW--AYWFKKILYYQVALVYMLTR  263 (422)
Q Consensus       205 ~~~i~~~i~~i~~~i~~~~~~E~~~----~~~--~--~-~-~--~----~~~~---~~--~~~~~n~~f~~~~~~~~~~~  263 (422)
                      .+.+.+++.+++.+..++..++++.    +++  +  + + +  .    +..+   .+  .+++|+|.++..+...++..
T Consensus       175 ~f~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  254 (455)
T TIGR00892       175 SFLILGGLLLHCCVCGALMRPVGPSQRVSKSKSKEGLPPDGSTKKLSKKSTAEKINRFLDFSLFTHRGFLVYLSGNVIMF  254 (455)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCCcccccccccccccCCCCCccccccccchhhhhhhhcchHHhcCchHHHHHHHHHHHH
Confidence            9888887766554444433332111    000  0  0 0 0  0    0000   11  14678888877666666666


Q ss_pred             HHHHhhhHHHHHHhhhccCccchhHh---------HH---HHHHH-------------HH--HHHH---HH-HHH-----
Q 014600          264 LVVNVSQAYLAFYVINDLRMGQSAKA---------LV---PAIIY-------------IC--SFIV---SI-LLQ-----  307 (422)
Q Consensus       264 ~~~~~~~~y~~~y~~~~~~l~~~~~~---------~i---P~~~~-------------~~--~~~~---~~-~~~-----  307 (422)
                      .+......|++.|..+ .+++....+         .+   |...+             ..  +...   .. +..     
T Consensus       255 ~~~~~~~~~l~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~  333 (455)
T TIGR00892       255 LGFFAPIIFLVPYAKD-KGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLCALAGDY  333 (455)
T ss_pred             HHccchHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHHhchH
Confidence            6666667788988865 466543311         00   00000             00  0000   00 000     


Q ss_pred             --------HHH----------hhhhhhhhcCccccccceehhhHHHHHHHHHHHHHHHHHhHhhCC-Cc
Q 014600          308 --------VTG----------ISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQSMSP-TV  357 (422)
Q Consensus       308 --------v~~----------~~~~~~~~g~r~~g~~~~~s~~~~~~K~~~a~~~~i~g~~l~~~G-y~  357 (422)
                              +.+          ..+..+..++++.|.  .+|..+....+|+.+|+.+.|.+.+..| |+
T Consensus       334 ~~~~i~~~~~G~~~g~~~~~~~~~~~~~~~~~~~g~--~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~  400 (455)
T TIGR00892       334 TGLVIYCIFFGLSFGSVGALLFEVLMDLVGAQRFSS--AVGLVTIVECCAVLIGPPLAGRLVDATKNYK  400 (455)
T ss_pred             HHHHHHHHHHHHHhchHHHHHHHHHHHHhhHHHHhh--HHhHHHHHHHHHHHccccceeeeehhcCCcc
Confidence                    001          122334556667777  8999999999999999999999888764 54

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.67  E-value=5.4e-14  Score=136.37  Aligned_cols=274  Identities=16%  Similarity=0.161  Sum_probs=185.7

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHhhhhhhhhhhhhcccCCchhHHHHHHHHHHHHHHHhhcCc
Q 014600           32 GHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGC  111 (422)
Q Consensus        32 g~~~~~~~~~~~~~~l~~f~t~~gls~~~~g~i~~i~~l~~ai~~p~~G~lsDr~Grrrp~ll~g~i~~~i~~~~lf~~~  111 (422)
                      ..+...........+.+.+..+.|.++.+.+.+..+..+...+.+|+.|+++||+||||. +..+.+...++...+..  
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~g~r~~-~~~~~~~~~~~~~~~~~--   83 (352)
T cd06174           7 GFFLSGLDRGLLSPALPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRV-LLLGLLLFALGSLLLAF--   83 (352)
T ss_pred             HHHHHHHhhhhhHhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchh-hHHHHHHHHHHHHHHHH--
Confidence            345556666667777888887779999999999999999999999999999999999986 66788888777665442  


Q ss_pred             cCccccCCccchhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 014600          112 MPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVST  191 (422)
Q Consensus       112 ~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~al~~~~t~~~~eR~~l~~~~~~~~~ig~~l~~~~~~~l~~~~~  191 (422)
                           .+  +.+    .+.+...+.+++.+....+..++.+|+.+ +|||++..++......+|..+++.+...+.+.  
T Consensus        84 -----~~--~~~----~~~~~~~l~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~--  149 (352)
T cd06174          84 -----AS--SLW----LLLVGRFLLGLGGGALYPAAAALIAEWFP-PKERGRALGLFSAGFGLGALLGPLLGGLLAES--  149 (352)
T ss_pred             -----hc--cHH----HHHHHHHHHHcccccccHhHHHHHHHhCC-ccchhhhhhHHHHHHHHHHHHHHHHHHHHHHH--
Confidence                 11  111    22233356778888888999999999987 47999999999999999999988777666542  


Q ss_pred             CCCCCchHHHHHHHHHHHHHHHHHHHhhhhccccCcccccccCCCcchhhhHHHHHHhHHHHHHHHHHHHHHHHHHhhhH
Q 014600          192 AKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISWAYWFKKILYYQVALVYMLTRLVVNVSQA  271 (422)
Q Consensus       192 ~~g~~~~~~~~~~~~~i~~~i~~i~~~i~~~~~~E~~~~~~~~~~~~~~~~~~~~~~n~~f~~~~~~~~~~~~~~~~~~~  271 (422)
                              .+|++.+.+.+++.++..++..+. +                        |.++......++..........
T Consensus       150 --------~~~~~~~~~~~~~~~~~~~~~~~~-~------------------------~~~~~~~~~~~~~~~~~~~~~~  196 (352)
T cd06174         150 --------LGWRWLFLILAILGLLLALLLLFL-L------------------------RLLLLLALAFFLLSFGYYGLLT  196 (352)
T ss_pred             --------hhHHHHHHHHHHHHHHHHHHHHHH-H------------------------HHHHHHHHHHHHHHhHHHHHHH
Confidence                    357777776666655554443322 1                        4455555555555566666677


Q ss_pred             HHHHHhhhccCccchhHhHH------------HH-----------H-HHHHHHHHHHHH-------H----------HH-
Q 014600          272 YLAFYVINDLRMGQSAKALV------------PA-----------I-IYICSFIVSILL-------Q----------VT-  309 (422)
Q Consensus       272 y~~~y~~~~~~l~~~~~~~i------------P~-----------~-~~~~~~~~~~~~-------~----------v~-  309 (422)
                      +.+.|..+..+.+.......            +.           . ....+.......       .          +. 
T Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g  276 (352)
T cd06174         197 YLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPSLALLLVALLLLG  276 (352)
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence            77777776545444321100            00           0 001111100000       0          00 


Q ss_pred             ---------HhhhhhhhhcCccccccceehhhHHHHHHHHHHHHHHHHHhHhhCCCc
Q 014600          310 ---------GISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQSMSPTV  357 (422)
Q Consensus       310 ---------~~~~~~~~~g~r~~g~~~~~s~~~~~~K~~~a~~~~i~g~~l~~~Gy~  357 (422)
                               ...+..+..+++++|.  .+|..+..+++++.+++.+.+.+.+..||+
T Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~i~~~i~g~l~~~~~~~  331 (352)
T cd06174         277 FGLGFAFPALLTLASELAPPEARGT--ASGLFNTFGSLGGALGPLLAGLLLDTGGYG  331 (352)
T ss_pred             HHHhccchhHHHHHHhhcCHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHhcccCcc
Confidence                     1223445566677888  999999999999999999999998765553

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=99.64  E-value=6e-14  Score=143.64  Aligned_cols=230  Identities=10%  Similarity=0.024  Sum_probs=145.6

Q ss_pred             HHHHHHHHHHHhCCChhHHHHHHHHHHHHhhhhhhhhhhhhcccCCchhHHHHHHHHHHHHHHHhhcCccCccccCCccc
Q 014600           43 WFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTL  122 (422)
Q Consensus        43 ~~~~l~~f~t~~gls~~~~g~i~~i~~l~~ai~~p~~G~lsDr~Grrrp~ll~g~i~~~i~~~~lf~~~~p~~~~~~~~~  122 (422)
                      +..+++.+..+.|++..+.|++.++..+...+..|+.|+++||+|||+. +..+.+..+++..+.-.       .+  +.
T Consensus        55 ~~~~~~~l~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~-~~~~~~~~~~~~~~~~~-------~~--s~  124 (476)
T PLN00028         55 AAPLLPIIRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPRYG-SAFLLMLTAPAVFCMSL-------VS--SA  124 (476)
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHH-HHHHHHHHHHHHHHHHH-------hc--CH
Confidence            3344555555569999999999888888899999999999999999987 45666666666543221       11  11


Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchHHHH
Q 014600          123 KVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQY  202 (422)
Q Consensus       123 ~~~~~~~~~~~~l~~~~~~~~~~p~~al~~~~t~~~~eR~~l~~~~~~~~~ig~~l~~~~~~~l~~~~~~~g~~~~~~~~  202 (422)
                      .    .+.+..++.+++.+.. .+...+++++.+ +++|++..++.+...++|..++..+.+.+...+...+ .+...+|
T Consensus       125 ~----~l~~~r~l~G~~~~~~-~~~~~~i~~~~~-~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~-~~~~~gW  197 (476)
T PLN00028        125 T----GFIAVRFFIGFSLATF-VSCQYWMSTMFN-GKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAG-APSFTAW  197 (476)
T ss_pred             H----HHHHHHHHHHHHHHhh-HHHHHHHHHhcC-hhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-Ccchhhh
Confidence            1    1112233456555543 344556788875 6789999999887777777777665533333221110 1123589


Q ss_pred             HHHHHHHHHHHHHHHhhhhccccCccccc---cc-C---CCcchhhhHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 014600          203 RWIAYSSIFIGCCFVGIFLSRTEEPRLKM---GL-R---GNSHARISWAYWFKKILYYQVALVYMLTRLVVNVSQAYLAF  275 (422)
Q Consensus       203 ~~~~~i~~~i~~i~~~i~~~~~~E~~~~~---~~-~---~~~~~~~~~~~~~~n~~f~~~~~~~~~~~~~~~~~~~y~~~  275 (422)
                      |+.+.+.++++++..++.++..++++..+   .+ +   ++.+..+.+++.+++++++.+.+.+.+..........+.|.
T Consensus       198 r~~f~i~g~l~l~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~  277 (476)
T PLN00028        198 RIAFFVPGLLHIIMGILVLTLGQDLPDGNYRELKKSGTMPKDSFSKVLRYGVTNYRTWILALTYGYSFGVELTMDNIIAE  277 (476)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCcCCCCchhhHHhcCccccccHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHhHHHH
Confidence            99999888887776666555544433211   00 1   11122345677788888777666665554444556778899


Q ss_pred             HhhhccCccchhHh
Q 014600          276 YVINDLRMGQSAKA  289 (422)
Q Consensus       276 y~~~~~~l~~~~~~  289 (422)
                      |+.+..+++.....
T Consensus       278 ~l~~~~g~s~~~a~  291 (476)
T PLN00028        278 YFYDRFGLSLETAG  291 (476)
T ss_pred             HHHHhcCCCHHHHH
Confidence            98877777665443

>TIGR00896 CynX cyanate transporter

Probab=99.63  E-value=1.7e-13  Score=134.60  Aligned_cols=213  Identities=15%  Similarity=0.057  Sum_probs=137.7

Q ss_pred             HHHHHHHHHHhCCChhHHHHHHHHHHHHhhhhhhhhhhhhcccCCchhHHHHHHHHHHHHHHHhhcCccCccccCCccch
Q 014600           44 FTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLK  123 (422)
Q Consensus        44 ~~~l~~f~t~~gls~~~~g~i~~i~~l~~ai~~p~~G~lsDr~Grrrp~ll~g~i~~~i~~~~lf~~~~p~~~~~~~~~~  123 (422)
                      .+.+|.+.+|.|++..++|++.++..+...+..|+.|+++||+||||. +..+.+..+++......   |       +.+
T Consensus        20 ~~~lp~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~-~~~~~~~~~~~~~~~~~---~-------~~~   88 (355)
T TIGR00896        20 GPLLPQIRSALGMSFSVAGLLTALPVLCFAVLAPLAPWLARRFGEERS-VAAGLLLIAAGILIRSA---P-------GTA   88 (355)
T ss_pred             cccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHH-HHHHHHHHHHHHHHHHh---c-------cHH
Confidence            456667666679999999999999999999999999999999999988 55666666665543321   1       111


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchHHHHH
Q 014600          124 VETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYR  203 (422)
Q Consensus       124 ~~~~~~~~~~~l~~~~~~~~~~p~~al~~~~t~~~~eR~~l~~~~~~~~~ig~~l~~~~~~~l~~~~~~~g~~~~~~~~~  203 (422)
                          .+++.+.+.+++.+.......++..+..  +++|++..+..+...++|..+++.+..++.+..        ..+|+
T Consensus        89 ----~l~~~~~~~g~g~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~--------~~~w~  154 (355)
T TIGR00896        89 ----LLFAGTALIGVGIAIINVLLPSLIKRDF--PQRVGLMTGLYSMALMGGAALAAAATVPLAQHS--------GGHWQ  154 (355)
T ss_pred             ----HHHHHHHHHHHHHHHHhccchHHHHHhC--cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh--------hhhHH
Confidence                1122334566666666666666777765  358999999988888888888877766665421        12488


Q ss_pred             HHHHHHHHHHHHHHhhhhccccCcccccccCCCcchhhhHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhccCc
Q 014600          204 WIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISWAYWFKKILYYQVALVYMLTRLVVNVSQAYLAFYVINDLRM  283 (422)
Q Consensus       204 ~~~~i~~~i~~i~~~i~~~~~~E~~~~~~~~~~~~~~~~~~~~~~n~~f~~~~~~~~~~~~~~~~~~~y~~~y~~~~~~l  283 (422)
                      +.+.+.+++.++....   ..+|++.+++++ +.+.++..++++|||.++...+.+.+..........|.|.|..+ .+.
T Consensus       155 ~~f~~~~~~~~~~~~~---~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~-~g~  229 (355)
T TIGR00896       155 QALAWWALPALLALLA---WIPQVRRRVAAN-QTTTRLTPVRIWRSPLAWQVTVFFGLQSGLYYSLIGWLPAILIS-HGA  229 (355)
T ss_pred             HHHHHHHHHHHHHHHH---HhhhhccccCCC-CCCCCCCCchhhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCC
Confidence            7766555444333222   223322211111 11112334677899988766555555555566677889999876 466


Q ss_pred             cch
Q 014600          284 GQS  286 (422)
Q Consensus       284 ~~~  286 (422)
                      +..
T Consensus       230 ~~~  232 (355)
T TIGR00896       230 SAA  232 (355)
T ss_pred             CHH
Confidence            543

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=99.63  E-value=2.7e-13  Score=152.96  Aligned_cols=251  Identities=12%  Similarity=-0.044  Sum_probs=149.4

Q ss_pred             ceeeeeeeccchhHHHHHHHHHHHHHHHHHH-hCC--ChhHHHHHHHHHHHHhhhhhhhhhhhhcccCCchhHHHHHHHH
Q 014600           23 RWSVLYYGSGHMLNDITAACWFTYLLLFLTD-IGL--SPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVL   99 (422)
Q Consensus        23 ~~~~~~y~~g~~~~~~~~~~~~~~l~~f~t~-~gl--s~~~~g~i~~i~~l~~ai~~p~~G~lsDr~Grrrp~ll~g~i~   99 (422)
                      .+....+-+..+..++........+..+... .+.  +....+++.++..+..++..|+.|+++||+||||.++ ++..+
T Consensus         8 ~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l~-~~~~~   86 (1146)
T PRK08633          8 IIGFLPLLLTQFLNAFNDLGHKILIQNTLIKAYDGSEQVILTAIVNALFLLPFLLLSSPAGFLADKFSKNRVIR-IVKLF   86 (1146)
T ss_pred             hhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHhhhHhhhcccccHHHHHH-HHHHH
Confidence            3344444455555554444433333333333 344  4556889999999999999999999999999998854 44443


Q ss_pred             HHHHHHHhhcCccCccccCCccchhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCccchhhHHHHHHHHHHHHHHHH
Q 014600          100 VAVSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSL  179 (422)
Q Consensus       100 ~~i~~~~lf~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~al~~~~t~~~~eR~~l~~~~~~~~~ig~~l~  179 (422)
                      .++...+...   . ...  .+ .   ..+++..++.+++.++...+..++++|+++ +++|+++.++...+..+|.+++
T Consensus        87 ~~~~~~~~~~---~-~~~--~~-~---~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~ig~~lg  155 (1146)
T PRK08633         87 EVGLTLLIVL---A-YYL--GW-F---WLAFAVTFLLGAQSAIYSPAKYGIIPELVG-KENLSRANGLLEAFTIVAILAG  155 (1146)
T ss_pred             HHHHHHHHHH---H-HHH--cc-H---HHHHHHHHHHHHHHHhhchHHHhhhHHhcC-cccchhhhhHHHHHHHHHHHHH
Confidence            3333222111   0 001  11 1   122333456788888888899999999987 5789999999999999999999


Q ss_pred             HHHHHHHHhhccCCCCCchHHHHHHHHHHHHHHHHHHHhhhhccccCccccccc---CC----CcchhhhHHHHHHhHHH
Q 014600          180 YAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGL---RG----NSHARISWAYWFKKILY  252 (422)
Q Consensus       180 ~~~~~~l~~~~~~~g~~~~~~~~~~~~~i~~~i~~i~~~i~~~~~~E~~~~~~~---~~----~~~~~~~~~~~~~n~~f  252 (422)
                      +.+++.+.......+ .+...++.+...+..+...+..++..+..+|.+.++.+   ++    .....+.++.+++||.+
T Consensus       156 ~~l~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  234 (1146)
T PRK08633        156 TALFSFLFESVNGNT-PSEILGRIAPAGLVLLAVAVLGLIFAYRLPKVPAAAPEVFDKKKYLFPKLLWRNLKLLRSDRVL  234 (1146)
T ss_pred             HHHHHHHHHhhcccc-ccccccchHHHHHHHHHHHHHHHHHHhcCcCCCCCCcccccccccccHHHHHHHHHHHhcCcHH
Confidence            888776665311000 00011233333332222222233333445664322111   11    11234557778899987


Q ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHhhhccCccch
Q 014600          253 YQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQS  286 (422)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~~y~~~y~~~~~~l~~~  286 (422)
                      +..++...+.+........++|.|+.+..+++..
T Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~  268 (1146)
T PRK08633        235 WLAIIGLSYFWFISQLAQANFPAYAKEVLGLDNT  268 (1146)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCCcH
Confidence            7766655555566666778899999888777655

>TIGR00889 2A0110 nucleoside transporter

Probab=99.62  E-value=3.1e-13  Score=136.08  Aligned_cols=289  Identities=9%  Similarity=0.012  Sum_probs=158.6

Q ss_pred             chhHHHHHHHHHHHHHHHHHHh-CCChhHHHHHHHHHHHHhhhhhhhhhhhhcccCCchhHHHHHHHHHHHHHHHhhcCc
Q 014600           33 HMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGC  111 (422)
Q Consensus        33 ~~~~~~~~~~~~~~l~~f~t~~-gls~~~~g~i~~i~~l~~ai~~p~~G~lsDr~Grrrp~ll~g~i~~~i~~~~lf~~~  111 (422)
                      .+.....+.++.++++.|+++. |++..++|++.++..+...+.+|+.|+++||+||||+.+..+.+..++...+...  
T Consensus        11 ~~~~~~~~~~~~~~l~~~l~~~~g~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr~g~~r~~~~~~~~~~~~~~~~~~~--   88 (418)
T TIGR00889        11 SFLQWFIWGSWLVTLGSYMSKTLHFSGAEIGWVYSSTGIAAILMPILVGIIADKWLSAQKVYAVCHFAGALLLFFAAQ--   88 (418)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHH--
Confidence            3445566778889999999987 9999999999999999999999999999999988777676666666555433221  


Q ss_pred             cCccccCCccchhhhHHHHHHHHHHHHHHHHHHhhhhhh----hh----hccCCccchhhHHHHHHHHHHHHHHHHHHHH
Q 014600          112 MPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSM----VN----CITLNSTSRVVLTSCRNAFTMVANLSLYAIA  183 (422)
Q Consensus       112 ~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~al----~~----~~t~~~~eR~~l~~~~~~~~~ig~~l~~~~~  183 (422)
                           .+  +.+..++.    ..+.+++++.......++    ..    |..+ +..|.+..+      .+|..+++.++
T Consensus        89 -----~~--~~~~~~~~----~~l~~~~~~~~~~~~~~l~~~~~~~~g~~~~~-~~~~~r~~G------~lG~~ig~~l~  150 (418)
T TIGR00889        89 -----VT--TPAGMFPV----LLANSLAYMPTIALTNSISYANLPQAGLDVVT-DFPPIRVMG------TIGFIAAMWAV  150 (418)
T ss_pred             -----hc--CHHHHHHH----HHHHHHHHccHHHHHHHHHHHHHhhcCCCchh-cCCCeeeeh------hHHHHHHHHHH
Confidence                 11  11111111    123444433222222222    22    2222 223433332      34555554444


Q ss_pred             HHHHhhccCCCCCchHHHHHHHHHHHHHHHHHHHhhhhccccCcccccccCCCcchh----hhHHHHHHhHHHHHHHHHH
Q 014600          184 FIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHAR----ISWAYWFKKILYYQVALVY  259 (422)
Q Consensus       184 ~~l~~~~~~~g~~~~~~~~~~~~~i~~~i~~i~~~i~~~~~~E~~~~~~~~~~~~~~----~~~~~~~~n~~f~~~~~~~  259 (422)
                      +.+ ..         ...|.+ +++.+++.++..++ .+.+||++.+++++ +.+.+    .+.+.++|||+++.+++..
T Consensus       151 g~l-~~---------~~~~~~-f~~~~~~~~~~~~~-~~~~~e~~~~~~~~-~~~~~~~~~~~~~~~~k~~~~~~~~~~~  217 (418)
T TIGR00889       151 SLL-DI---------ELSNIQ-LYITAGSSALLGVF-ALTLPDIPVAKSTA-KMSIKVMLGLDAFILFKNKRMAIFFFFS  217 (418)
T ss_pred             HHh-cc---------cchhHH-HHHHHHHHHHHHHH-HhcCCCCCCCcccc-ccCHHHHhhhhHHHHhcCCCeeeHHHHH
Confidence            322 11         112332 33444444444433 45667754222111 11111    2345688999887766666


Q ss_pred             HHHHHHHHhhhHHHHHHhhhccCccc--------hhH---------hHHHH------HH--------HHHHHHH------
Q 014600          260 MLTRLVVNVSQAYLAFYVINDLRMGQ--------SAK---------ALVPA------II--------YICSFIV------  302 (422)
Q Consensus       260 ~~~~~~~~~~~~y~~~y~~~~~~l~~--------~~~---------~~iP~------~~--------~~~~~~~------  302 (422)
                      ++..........|++.|..+. +.++        ...         ..++.      +.        ...+.+.      
T Consensus       218 ~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~  296 (418)
T TIGR00889       218 MLLGAPLQITNIFGNGFLHEF-GRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFG  296 (418)
T ss_pred             HHHHhHHHHHHHhHHHHHHHh-cccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHH
Confidence            665555555667778887653 2111        110         01111      00        0000000      


Q ss_pred             -H-H------------HHH-HHH----------hhhhhhhhcCccccccceehhhH-HHHHHHHHHHHHHHHHhHhhCCC
Q 014600          303 -S-I------------LLQ-VTG----------ISMQNVLVGEDLSGCAFVCGTLS-FLDKMSCGIAVYVLQSYQSMSPT  356 (422)
Q Consensus       303 -~-~------------~~~-v~~----------~~~~~~~~g~r~~g~~~~~s~~~-~~~K~~~a~~~~i~g~~l~~~Gy  356 (422)
                       . .            +.. +.+          ..+..+..++++.|.  .+|..+ ....+|..+|+.+.|++.+..|.
T Consensus       297 l~~~~~~~~~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~--~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~  374 (418)
T TIGR00889       297 FFAYGDPEYFGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRAS--AQGLFTLMCNGFGSLLGYILSGVMVEKMFA  374 (418)
T ss_pred             HHHHcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH--HHHHHHHHHHhhHHHHHHHHHHHHHHHhcc
Confidence             0 0            000 001          112345667778888  899986 67889999999999999998774


Q ss_pred             c
Q 014600          357 V  357 (422)
Q Consensus       357 ~  357 (422)
                      +
T Consensus       375 ~  375 (418)
T TIGR00889       375 Y  375 (418)
T ss_pred             c
Confidence            3

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=99.62  E-value=4.2e-13  Score=130.26  Aligned_cols=320  Identities=11%  Similarity=0.090  Sum_probs=197.2

Q ss_pred             HhCCChhHHHHHHHHHHHHhhhhhhhhhhhhcccC-----CchhHHHHHHHHHHHHHHHhhcCccCccccC-----Cccc
Q 014600           53 DIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFG-----HFKIWHGAGSVLVAVSFSSVFGGCMPCRILS-----TSTL  122 (422)
Q Consensus        53 ~~gls~~~~g~i~~i~~l~~ai~~p~~G~lsDr~G-----rrrp~ll~g~i~~~i~~~~lf~~~~p~~~~~-----~~~~  122 (422)
                      |.++++..++.+..+..++ +...|.+|+.||+.+     ||.||+..|....+.+...+-.. . ..+..     +...
T Consensus         9 EL~vpA~lv~~lval~~~~-ap~R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a-~-~~l~~~~~~~~~~~   85 (403)
T PF03209_consen    9 ELGVPAWLVALLVALHYLV-APLRVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFA-L-LLLAESGQQSSGPF   85 (403)
T ss_pred             HhccHHHHHHHHHHHHHHH-HHHHHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHH-H-HHHccccccccccc
Confidence            3489999999888887776 557999999999877     99999999988887765433110 0 00111     1112


Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchHHHH
Q 014600          123 KVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQY  202 (422)
Q Consensus       123 ~~~~~~~~~~~~l~~~~~~~~~~p~~al~~~~t~~~~eR~~l~~~~~~~~~ig~~l~~~~~~~l~~~~~~~g~~~~~~~~  202 (422)
                      +.....-.+...+++++.+...+|+.++..|.++ ||+|.++.++-..+..+|.+++..+.+.+++.+       +...-
T Consensus        86 ~~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~-e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~-------s~~rL  157 (403)
T PF03209_consen   86 WLGLALAALAFLLYGLGVHASGTSFLALLADLAP-EERRPRVVAIVWVMLIVGIIVSAIVFGRLLDPF-------SPERL  157 (403)
T ss_pred             HHHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCC-HhhhhhhHHHHHHHHHHHHHHHHHHHHHHcccc-------CHHHH
Confidence            2111122222246899999999999999999986 789999999988888888888777666655432       11222


Q ss_pred             HHHHHHHHHHHHHHHhhhhccccCcccc---cccCCCcchhhhHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHhhh
Q 014600          203 RWIAYSSIFIGCCFVGIFLSRTEEPRLK---MGLRGNSHARISWAYWFKKILYYQVALVYMLTRLVVNVSQAYLAFYVIN  279 (422)
Q Consensus       203 ~~~~~i~~~i~~i~~~i~~~~~~E~~~~---~~~~~~~~~~~~~~~~~~n~~f~~~~~~~~~~~~~~~~~~~y~~~y~~~  279 (422)
                      .......+++.++..++..+..+.|..+   .+++++.++++.++++.+||+-++++..-++..++.+.--..+=.|--+
T Consensus       158 ~~v~~~~a~i~~~l~~ia~wg~E~r~~~~~~~~~~~~~~f~~a~~~~~~~~~a~~f~~fl~l~t~a~~~QD~iLEPygg~  237 (403)
T PF03209_consen  158 IQVIQGVALIALLLNLIALWGQEPRRSRRAAAAERPRPPFREAWRQVWASPQARRFFVFLFLGTLAFFMQDVILEPYGGE  237 (403)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcccCCcccccCCCCCCccHHHHHHHHHhCCChhHHHHHHHHHHHHHHhhHHHcCCchhH
Confidence            2222233344444444445554333222   1235566788999999999887665544444444443333444445555


Q ss_pred             ccCccchhHh----------HHHHHH--------------HHHHHHHHH-------HHH-------------HH------
Q 014600          280 DLRMGQSAKA----------LVPAII--------------YICSFIVSI-------LLQ-------------VT------  309 (422)
Q Consensus       280 ~~~l~~~~~~----------~iP~~~--------------~~~~~~~~~-------~~~-------------v~------  309 (422)
                      ..+++.....          .+-+..              -..|+..+.       +..             +.      
T Consensus       238 Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a~~~~~~~~~~~~~~l~G~g~G~  317 (403)
T PF03209_consen  238 VFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIILAGPLGSPWLFRPGVFLLGLGNGL  317 (403)
T ss_pred             HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhhhH
Confidence            6666554321          000000              011111110       000             01      


Q ss_pred             ----HhhhhhhhhcCccccccceehhhHHHHHHHHHHHHHHHHHhHhhCCCccCCCCcccccccccCCCccchHHHHHHH
Q 014600          310 ----GISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQSMSPTVLDNNSSITSLTVLDNNSLISTSYISVTR  385 (422)
Q Consensus       310 ----~~~~~~~~~g~r~~g~~~~~s~~~~~~K~~~a~~~~i~g~~l~~~Gy~~~~~~~~~~~~~~~~~~~q~~~~~~~i~  385 (422)
                          ..++.-+.+.+.++|+  +.|.|...|-++.++|..+.|.++|....-.+               .   +...+..
T Consensus       318 f~vgals~mM~lt~~~~aG~--~mG~WGaaQA~A~Glg~~~GG~~~D~~~~~~~---------------~---~~~~aY~  377 (403)
T PF03209_consen  318 FTVGALSLMMDLTSAGRAGL--FMGAWGAAQAIARGLGTFLGGALRDLVRALFG---------------N---SPALAYG  377 (403)
T ss_pred             HHHHHHHHHHhCCCCcchhH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---------------C---CcchHHH
Confidence                1333456777888999  99999999999999999999999997654321               0   1134666


Q ss_pred             HHHhhHhHHHHHHHHHHHH
Q 014600          386 FGLGLIPAICSLVSVAVTF  404 (422)
Q Consensus       386 ~~~~~~P~i~~l~~~~~~~  404 (422)
                      ..|. +.+++++++++++.
T Consensus       378 ~VF~-lEa~ll~~a~~ll~  395 (403)
T PF03209_consen  378 VVFA-LEAVLLLAALVLLG  395 (403)
T ss_pred             HHHH-HHHHHHHHHHHHHH
Confidence            6665 57888888887764

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=99.62  E-value=6.1e-13  Score=132.64  Aligned_cols=229  Identities=14%  Similarity=0.066  Sum_probs=129.1

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHhhhhhhhhhhhhcccCCchhHHHHHHHHHHHHHHHhhcCc
Q 014600           32 GHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGC  111 (422)
Q Consensus        32 g~~~~~~~~~~~~~~l~~f~t~~gls~~~~g~i~~i~~l~~ai~~p~~G~lsDr~Grrrp~ll~g~i~~~i~~~~lf~~~  111 (422)
                      -.+..-..++...+|++.|+++.|+|+.++|.++++..+...++.|++|.++||++++|..+.+..+..++.+.+...  
T Consensus        10 ~~f~~f~~~G~~~p~~~~~L~~~G~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~~~~--   87 (400)
T PF03825_consen   10 MYFLYFFAYGAFLPYLPLYLESRGFSGTQIGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALALLLLAF--   87 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHH--
Confidence            344555666778889999999999999999999999999999999999999999997777676655555554433221  


Q ss_pred             cCccccCCccchhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCccchhhHHHHHHHHHHHHHHHHHHHH-HHHHhhc
Q 014600          112 MPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIA-FIVFSVS  190 (422)
Q Consensus       112 ~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~al~~~~t~~~~eR~~l~~~~~~~~~ig~~l~~~~~-~~l~~~~  190 (422)
                           .  .+.++.+.    +.+++.+.++....-..++.-+..+  ++|.+....|.. +.+|-+++.... ..+.+..
T Consensus        88 -----~--~~f~~~~~----~~~l~~~~~~p~~pl~dsi~~~~~~--~~~~~YG~iRlw-GSiGf~~~~~~~~~~~~~~~  153 (400)
T PF03825_consen   88 -----S--SSFWWLFV----IMLLFSFFFSPTMPLSDSIALSYLG--DRGKDYGRIRLW-GSIGFIVAALAFGGLLGGYL  153 (400)
T ss_pred             -----h--ccHHHHHH----HHHHHHHHHccHHHHHHHHHHHHcc--cccCCCCcchhh-hhHHHHHHHHHHHHHHHhhh
Confidence                 1  12222211    1223444444333333444444332  334445555543 344444443221 1122211


Q ss_pred             cCCCCCchHHHHHHHHHHHHHHHHHHHhhhhccccCcccccccC--CCcchhhhHHHHHHhHHHHHHHHHHHHHHHHHHh
Q 014600          191 TAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLR--GNSHARISWAYWFKKILYYQVALVYMLTRLVVNV  268 (422)
Q Consensus       191 ~~~g~~~~~~~~~~~~~i~~~i~~i~~~i~~~~~~E~~~~~~~~--~~~~~~~~~~~~~~n~~f~~~~~~~~~~~~~~~~  268 (422)
                      +       ..+..+..++.+...++....+ +..|+.+.+++++  .++....+..+++|||++..+++..++.+.....
T Consensus       154 ~-------~~~~~~~~~i~~~~~~ll~~~~-l~lp~~~~~~~~~~~~~~~~~~~~~~llk~~~~~~Fll~~~l~~~~~~~  225 (400)
T PF03825_consen  154 G-------ISGTSLIFYIAAILSLLLAGFA-LFLPKTPPKRSAKESVKKLLGLDALKLLKNPRFLVFLLAAFLIGISHAA  225 (400)
T ss_pred             c-------cccccHHHHHHHHHHHHHHHHH-HhCCCCccccccCCCcccccchHHHHHhcCccHHHHHHHHHHHHHHHHH
Confidence            1       0111223333333333322222 2234433211111  1112223335799999988877777777778888


Q ss_pred             hhHHHHHHhhhccCcc
Q 014600          269 SQAYLAFYVINDLRMG  284 (422)
Q Consensus       269 ~~~y~~~y~~~~~~l~  284 (422)
                      ..+|.+.|+.+..+..
T Consensus       226 ~~~f~~~yl~~~gg~~  241 (400)
T PF03825_consen  226 YYTFFSIYLQELGGYS  241 (400)
T ss_pred             HHHHHHHHHHHcccch
Confidence            8899999988876443

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.62  E-value=2.1e-12  Score=132.70  Aligned_cols=242  Identities=12%  Similarity=0.095  Sum_probs=143.1

Q ss_pred             ccchhHHHHHHHHHHHHHHHHHHh-C--CChh--HHHH--HHHHHHHHhhhhhhhhhhhhcccCCchhHHHHHHHHHHHH
Q 014600           31 SGHMLNDITAACWFTYLLLFLTDI-G--LSPR--GAAA--VMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVS  103 (422)
Q Consensus        31 ~g~~~~~~~~~~~~~~l~~f~t~~-g--ls~~--~~g~--i~~i~~l~~ai~~p~~G~lsDr~Grrrp~ll~g~i~~~i~  103 (422)
                      +|.+.......+ ..+..++..+. +  .++.  .++.  +.++..+..++..++.|+++||+||||. +..+.++++++
T Consensus        23 ~g~~~~~~d~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~-l~~~~~l~~i~  100 (490)
T PRK10642         23 LGNAMEWFDFGV-YGFVAYALGKVFFPGADPSVQMIAALATFSVPFLIRPLGGLFFGMLGDKYGRQKI-LAITIVIMSIS  100 (490)
T ss_pred             HHHHHHHHHHHH-HHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHH-HHHHHHHHHHH
Confidence            444444443343 34555555554 3  3332  2333  2466778888999999999999999998 55677777777


Q ss_pred             HHHhhcCccCccccCCccc--hhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCccchhhHHHHHHHHHHHHHHHHHH
Q 014600          104 FSSVFGGCMPCRILSTSTL--KVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYA  181 (422)
Q Consensus       104 ~~~lf~~~~p~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~p~~al~~~~t~~~~eR~~l~~~~~~~~~ig~~l~~~  181 (422)
                      ..+.-.       .++...  .+....+++.+++.+++.+....+..+++.|+.+ +++|++..++...+..+|..+++.
T Consensus       101 ~~~~a~-------~~~~~~~g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p-~~~Rg~~~~~~~~~~~~G~~lg~~  172 (490)
T PRK10642        101 TFCIGL-------IPSYATIGIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSP-DRKRGFMGSWLDFGSIAGFVLGAG  172 (490)
T ss_pred             HHHHHh-------cccHHHHHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCC-CCCCcHHHHHHHHHHHHHHHHHHH
Confidence            654321       222111  1111224445567888888888888999999986 578999999888777788777766


Q ss_pred             HHHHHHhhccCCCCCchHHHHHHHHHHHHHHHHHHHhhhhccccCccccc---c--cC-CC----cchhhhHHHHHHh-H
Q 014600          182 IAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKM---G--LR-GN----SHARISWAYWFKK-I  250 (422)
Q Consensus       182 ~~~~l~~~~~~~g~~~~~~~~~~~~~i~~~i~~i~~~i~~~~~~E~~~~~---~--~~-~~----~~~~~~~~~~~~n-~  250 (422)
                      +...+...++..  .....|||+.+++.++++++.. +.....||++...   +  ++ ++    ++.+..+++++++ +
T Consensus       173 ~~~~~~~~~~~~--~~~~~gWR~~f~i~~~~~l~~~-~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (490)
T PRK10642        173 VVVLISTIVGEA--NFLDWGWRIPFFIALPLGIIGL-YLRHALEETPAFQQHVDKLEQGDREGLQDGPKVSFKEIATKHW  249 (490)
T ss_pred             HHHHHHHhcCHH--HhcCccHHHHHHHHHHHHHHHH-HHHHcCCCChhHHHHHHhhhhhccccccccccCCHHHHHHHhH
Confidence            554443322110  0013589999988766555433 3345677764310   0  00 00    0122345666653 2


Q ss_pred             HHHH-HHHHHHHHHHHHHhhhHHHHHHhhhccCccc
Q 014600          251 LYYQ-VALVYMLTRLVVNVSQAYLAFYVINDLRMGQ  285 (422)
Q Consensus       251 ~f~~-~~~~~~~~~~~~~~~~~y~~~y~~~~~~l~~  285 (422)
                      +... .....++..........|+|.|+.+..+++.
T Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~  285 (490)
T PRK10642        250 RSLLTCIGLVIATNVTYYMLLTYMPSYLSHNLHYSE  285 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCH
Confidence            2222 2223333445566778899999987767654

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.61  E-value=5.3e-13  Score=137.07  Aligned_cols=158  Identities=14%  Similarity=0.056  Sum_probs=111.4

Q ss_pred             eeeeccchhHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHhhhhhhhhhhhhcccCCchhHHHHHHHHHHHHHHH
Q 014600           27 LYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSS  106 (422)
Q Consensus        27 ~~y~~g~~~~~~~~~~~~~~l~~f~t~~gls~~~~g~i~~i~~l~~ai~~p~~G~lsDr~Grrrp~ll~g~i~~~i~~~~  106 (422)
                      ....++.+...+........++....+.|+++.+.+.+.+...+...+..|+.|+++||+||||. ++.+.+..+++..+
T Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~-~~~~~~~~~~~~~~  101 (496)
T PRK03893         23 SAAWLGYLLDGFDFVLITLVLTEVQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGDRYGRRLA-MVISIVLFSVGTLA  101 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHH-HHHHHHHHHHHHHH
Confidence            44455555555665555555565555559999999999999999999999999999999999887 55677676666554


Q ss_pred             hhcCccCccccCCccchhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCccchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 014600          107 VFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIV  186 (422)
Q Consensus       107 lf~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~al~~~~t~~~~eR~~l~~~~~~~~~ig~~l~~~~~~~l  186 (422)
                      +..       .+  +.+    .+.+...+.+++.+....+..+++.|..+ +++|++..+.......+|..+++.+...+
T Consensus       102 ~~~-------~~--~~~----~l~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~~r~~~~~~~~~~~~~g~~~~~~~~~~l  167 (496)
T PRK03893        102 CGF-------AP--GYW----TLFIARLVIGMGMAGEYGSSATYVIESWP-KHLRNKASGFLISGFSIGAVVAAQVYSLV  167 (496)
T ss_pred             HHH-------Hh--HHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHcC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            331       11  111    12223346777777777777888899876 67899999988888888888777665544


Q ss_pred             HhhccCCCCCchHHHHHHHHHHH
Q 014600          187 FSVSTAKTHADLENQYRWIAYSS  209 (422)
Q Consensus       187 ~~~~~~~g~~~~~~~~~~~~~i~  209 (422)
                      .+          ..+|++.+.+.
T Consensus       168 ~~----------~~~w~~~f~~~  180 (496)
T PRK03893        168 VP----------VWGWRALFFIG  180 (496)
T ss_pred             hc----------cCCHHHHHHHH
Confidence            32          23788776653

>PRK09952 shikimate transporter; Provisional

Probab=99.61  E-value=1.5e-12  Score=131.89  Aligned_cols=219  Identities=11%  Similarity=0.033  Sum_probs=132.3

Q ss_pred             CCChhHHHHHH-----HHHHHHhhhhhhhhhhhhcccCCchhHHHHHHHHHHHHHHHhhcCccCccccCCccc--hhhhH
Q 014600           55 GLSPRGAAAVM-----LSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTL--KVETI  127 (422)
Q Consensus        55 gls~~~~g~i~-----~i~~l~~ai~~p~~G~lsDr~Grrrp~ll~g~i~~~i~~~~lf~~~~p~~~~~~~~~--~~~~~  127 (422)
                      +.++. .|.+.     .+.-+...+..++.|+++||+||||.+ +.+..+.+++..+...  .|     +...  ++...
T Consensus        56 ~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~G~l~Dr~Grr~~l-~~~~~~~~~~~~~~~~--~~-----~~~~~~~~~~~  126 (438)
T PRK09952         56 QVSPA-MGTLAAFATFGVGFLFRPLGGVVFGHFGDRLGRKRML-MLTVWMMGIATALIGL--LP-----SFSTIGWWAPV  126 (438)
T ss_pred             CCCcH-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhccHHHH-HHHHHHHHHHHHHHhc--CC-----cHHHHHHHHHH
Confidence            67766 35443     355666778889999999999999984 5677777776655432  12     2111  12222


Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhhhhhccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchHHHHHHHHH
Q 014600          128 SYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYRWIAY  207 (422)
Q Consensus       128 ~~~~~~~l~~~~~~~~~~p~~al~~~~t~~~~eR~~l~~~~~~~~~ig~~l~~~~~~~l~~~~~~~g~~~~~~~~~~~~~  207 (422)
                      .+++.+.+.+++.+.......++..|..+ +++|++..+....+..+|.+++..+...+...++..  .....+||+.++
T Consensus       127 ~l~~~R~l~G~~~g~~~~~~~~~~~e~~p-~~~rg~~~~~~~~g~~~G~~l~~~~~~~l~~~~~~~--~~~~~gWr~~f~  203 (438)
T PRK09952        127 LLVTLRAIQGFAVGGEWGGAALLAVESAP-KNKKAFYSSGVQVGYGVGLLLSTGLVSLISMMTTDE--QFLSWGWRIPFL  203 (438)
T ss_pred             HHHHHHHHHHhhhcccHHHHHHHHHHhCC-CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHH--HhhccChHHHHH
Confidence            34444567888888777777788999876 578999988888888888877765554443332110  001358999888


Q ss_pred             HHHHHHHHHHhhhhccccCcccccc---cC-CCcchhhhHHHHHHhHHHHHHH-HHHHHHHHHHHhhhHHHHHHhhhccC
Q 014600          208 SSIFIGCCFVGIFLSRTEEPRLKMG---LR-GNSHARISWAYWFKKILYYQVA-LVYMLTRLVVNVSQAYLAFYVINDLR  282 (422)
Q Consensus       208 i~~~i~~i~~~i~~~~~~E~~~~~~---~~-~~~~~~~~~~~~~~n~~f~~~~-~~~~~~~~~~~~~~~y~~~y~~~~~~  282 (422)
                      +.+++.++.. ......+|.+..++   ++ ++++.....+.++|+|+.+... ...++..........|.|.|..+..+
T Consensus       204 ~~~~~~l~~~-~l~~~~~es~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~g  282 (438)
T PRK09952        204 FSIVLVLIAL-WVRNGMEESAEFEQQQHEQAAAKKRIPVIEALLRHPGAFLKIIALRLCELLTMYIVTAFALNYSTQNLG  282 (438)
T ss_pred             HHHHHHHHHH-HHHHhCCCChhHHHHHhhcccccccCCHHHHHHHchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            7766654432 22334556432111   10 1111112234467777665543 34444455566677899999988777


Q ss_pred             ccch
Q 014600          283 MGQS  286 (422)
Q Consensus       283 l~~~  286 (422)
                      ++..
T Consensus       283 ~s~~  286 (438)
T PRK09952        283 LPRE  286 (438)
T ss_pred             CCHH
Confidence            6654

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=99.60  E-value=1.1e-12  Score=134.90  Aligned_cols=313  Identities=14%  Similarity=0.069  Sum_probs=190.6

Q ss_pred             CCCceeeeeeeccchhHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHhhhhhhhhhhhhcccCCchhHHHHHHHH
Q 014600           20 PVGRWSVLYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVL   99 (422)
Q Consensus        20 ~l~~~~~~~y~~g~~~~~~~~~~~~~~l~~f~t~~gls~~~~g~i~~i~~l~~ai~~p~~G~lsDr~Grrrp~ll~g~i~   99 (422)
                      +++.+..-.+-.+++..++...+...-++-+.++..-|+..+|++.....+=..+..|+.|.+.||+.|||.. +.+-+.
T Consensus         6 plr~~~Fr~lw~a~~iS~lG~~~~~va~~wlv~~lt~S~~~valv~~a~~LP~~Llsl~aG~laDr~drrril-i~~~~~   84 (524)
T PF05977_consen    6 PLRNRNFRRLWIAQLISNLGDWMQTVALAWLVTQLTGSPLMVALVQAASTLPILLLSLFAGALADRFDRRRIL-ILSQLL   84 (524)
T ss_pred             cccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHH-HHHHHH
Confidence            3444444555567777777766665556666667677899999999999999899999999999999999984 455444


Q ss_pred             HHHHHHHhhcCccCccccCCccchhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCccchhhHHHHHHHHHHHHHHHH
Q 014600          100 VAVSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSL  179 (422)
Q Consensus       100 ~~i~~~~lf~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~al~~~~t~~~~eR~~l~~~~~~~~~ig~~l~  179 (422)
                      .++....+..   . .+....+.+ .   .+++.++.+++.++.....+++++++.+ ++|..++++......+++.+++
T Consensus        85 ~~~~~~~L~~---l-~~~~~~~~~-~---Ll~~~fl~g~~~a~~~PA~~A~ip~lV~-~~~L~~A~al~s~~~niar~iG  155 (524)
T PF05977_consen   85 RALVALLLAV---L-AFFGLLSPW-L---LLILTFLLGIGSAFFNPAWQAIIPELVP-KEDLPAANALNSISFNIARIIG  155 (524)
T ss_pred             HHHHHHHHHH---H-HHhCcCCHH-H---HHHHHHHHHHHHHHHHHHHHHHHHHhcc-HhhHHHHHHHHHHHHHHHHhcc
Confidence            4333222211   0 001111222 1   1222346788888999999999999987 5778889999999899999999


Q ss_pred             HHHHHHHHhhccCCCCCchHHHHHHHHHHHHHHHHHHHhhhhccccCcccccc-cCC--CcchhhhHHHHHHhHHHHHHH
Q 014600          180 YAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMG-LRG--NSHARISWAYWFKKILYYQVA  256 (422)
Q Consensus       180 ~~~~~~l~~~~~~~g~~~~~~~~~~~~~i~~~i~~i~~~i~~~~~~E~~~~~~-~~~--~~~~~~~~~~~~~n~~f~~~~  256 (422)
                      +.+++.++..+          |..+.+.+.++..++ .+.+....|.+..+++ ++|  ..+.++.++.+.+||..+..+
T Consensus       156 PalgG~Lva~~----------G~~~~f~inalsfl~-~i~~l~~~~~~~~~~~~~~e~~~~~l~~G~ryv~~~~~l~~~l  224 (524)
T PF05977_consen  156 PALGGILVAFF----------GAAAAFLINALSFLI-SILALLRWKPPPPPSSLPRERFFSALREGLRYVRSSPPLRSVL  224 (524)
T ss_pred             chHHHHHHHHH----------HHHHHHHHHHHHHHH-HHHHHHHccccccccccchhhhhhhHHHHHHHHhcchHHHHHH
Confidence            98888887653          334455554433332 2233333443322111 111  124556677777788766555


Q ss_pred             HHHHHHHHHHHhhhHHHHHHhhhccCccchhHh---------------HHHHHH--------HHHHHH-----HHHHH--
Q 014600          257 LVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKA---------------LVPAII--------YICSFI-----VSILL--  306 (422)
Q Consensus       257 ~~~~~~~~~~~~~~~y~~~y~~~~~~l~~~~~~---------------~iP~~~--------~~~~~~-----~~~~~--  306 (422)
                      ...++..+........+|.+..+..+.++...+               ..|-+-        ...+.+     ...++  
T Consensus       225 ~~~~~~~l~~~a~~aLlPl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal~  304 (524)
T PF05977_consen  225 LRSFLFNLFASAVWALLPLFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFALALLLLALS  304 (524)
T ss_pred             HHHHHHHHhhhHHHHhhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHhcc
Confidence            444444444445566788888888777654321               011000        000000     00000  


Q ss_pred             H----------HHHhh-------h---hhhhhcCccccccceehhhHHHHHHHHHHHHHHHHHhHhhCC
Q 014600          307 Q----------VTGIS-------M---QNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQSMSP  355 (422)
Q Consensus       307 ~----------v~~~~-------~---~~~~~g~r~~g~~~~~s~~~~~~K~~~a~~~~i~g~~l~~~G  355 (422)
                      +          +.|.+       +   ....+-+...|-  ++|++......+.++|+.+.|.+.+..|
T Consensus       305 ~~~~~~~~~l~l~G~~~~~~~~~~~t~~Q~~~P~~~~GR--v~si~~~~~~g~~~lGsll~G~la~~~g  371 (524)
T PF05977_consen  305 PSFWLALIALFLAGAAWIIANSSLNTLVQLSVPDWVRGR--VFSIYQMVFFGGMPLGSLLWGFLADHFG  371 (524)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhH--HHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            0          11111       0   122233445666  8999999999999999999999877655

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=99.60  E-value=5.7e-13  Score=136.12  Aligned_cols=167  Identities=14%  Similarity=0.083  Sum_probs=113.6

Q ss_pred             CCChhHHHHHHHHHHHHhhhhhhhhhhhhcccCCchhHHHHHHHHHHHHHHHhhcCccCccccCC-ccchhhhHHHHHHH
Q 014600           55 GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILST-STLKVETISYCVFA  133 (422)
Q Consensus        55 gls~~~~g~i~~i~~l~~ai~~p~~G~lsDr~Grrrp~ll~g~i~~~i~~~~lf~~~~p~~~~~~-~~~~~~~~~~~~~~  133 (422)
                      |.++.+.|++.++..+..++..|+.|+++||+||||.++ .+.++.+++......+  .+..... .........+++.+
T Consensus        51 ~~~~~~~~~~~s~~~ig~~~~~~~~G~l~dr~Grr~~~~-~~~~l~~i~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~R  127 (479)
T PRK10077         51 SAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLK-IAAVLFFISALGSAWP--EFGFTSIGPDNTGYVPEFVIYR  127 (479)
T ss_pred             cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHH-HHHHHHHHHHHHHHhh--ccccccccccchhHHHHHHHHH
Confidence            788999999999999999999999999999999999854 5666666665433211  0000000 01111222334445


Q ss_pred             HHHHHHHHHHHhhhhhhhhhccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchHHHHHHHHHHHHHHH
Q 014600          134 AIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIG  213 (422)
Q Consensus       134 ~l~~~~~~~~~~p~~al~~~~t~~~~eR~~l~~~~~~~~~ig~~l~~~~~~~l~~~~~~~g~~~~~~~~~~~~~i~~~i~  213 (422)
                      ++.+++.+...++..++++|+++ ++||++..++...+..+|.++++.++..+......  ......+||+.+.+.++..
T Consensus       128 ~l~G~~~g~~~~~~~~~i~e~~~-~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~--~~~~~~gWr~~f~~~~~~~  204 (479)
T PRK10077        128 IIGGIGVGLASMLSPMYIAEIAP-AHIRGKLVSFNQFAIIFGQLVVYFVNYFIARSGDA--SWLNTDGWRYMFASEAIPA  204 (479)
T ss_pred             HHHhhhHhHHhhHHHHHHHhhCC-hhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccCcc--cccccCChHHHHHHHHHHH
Confidence            67889999989999999999987 57899999998888888888776655433321100  0001358999988877766


Q ss_pred             HHHHhhhhccccCcc
Q 014600          214 CCFVGIFLSRTEEPR  228 (422)
Q Consensus       214 ~i~~~i~~~~~~E~~  228 (422)
                      ++..+. .+.+||.+
T Consensus       205 ~~~~~~-~~~l~~s~  218 (479)
T PRK10077        205 LLFLML-LYFVPETP  218 (479)
T ss_pred             HHHHHH-HHcCCCCc
Confidence            665443 45677754

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=99.59  E-value=1e-12  Score=148.34  Aligned_cols=204  Identities=10%  Similarity=-0.089  Sum_probs=137.6

Q ss_pred             hhHHHHHHHHHHHHhhhhhhhhhhhhcccCCchhHHH--HHHHHHHHHHHHhhcCccCccccCCccchhhhHHHHHHHHH
Q 014600           58 PRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHG--AGSVLVAVSFSSVFGGCMPCRILSTSTLKVETISYCVFAAI  135 (422)
Q Consensus        58 ~~~~g~i~~i~~l~~ai~~p~~G~lsDr~Grrrp~ll--~g~i~~~i~~~~lf~~~~p~~~~~~~~~~~~~~~~~~~~~l  135 (422)
                      ....++..++..+..++..|+.|+++||+||||....  .+.+..++...+.+.       .  .+.+    .+++..++
T Consensus        51 ~~~~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~~~~~~~~~~~-------~--~s~~----~l~~~~~l  117 (1140)
T PRK06814         51 NALVTLAGAVFILPFFIFSALAGQLADKYDKAKLAKILKFAEIGIAALAIYGFH-------L--NSVP----LLFAALFL  117 (1140)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHH-------H--hhHH----HHHHHHHH
Confidence            3567888889999999999999999999999987422  222222222111111       1  1111    12233457


Q ss_pred             HHHHHHHHHhhhhhhhhhccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchHHHHHHHHHHHHHHHHH
Q 014600          136 FNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCC  215 (422)
Q Consensus       136 ~~~~~~~~~~p~~al~~~~t~~~~eR~~l~~~~~~~~~ig~~l~~~~~~~l~~~~~~~g~~~~~~~~~~~~~i~~~i~~i  215 (422)
                      .+++.++......++++++.+ +++|++++++.+....+|.++++.+++.++..          .+|++.++.. ++..+
T Consensus       118 ~gi~~a~~~p~~~a~l~~~~~-~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~~----------~~~~~~~~~~-~~~~~  185 (1140)
T PRK06814        118 MGIHSALFGPIKYSILPDHLN-KDELLGANALVEAGTFIAILLGTIIGGLATIS----------GNFVILVALL-MGIAV  185 (1140)
T ss_pred             HHHHHHhhchHHHHhhHhhcC-ccccchhhHHHHHHHHHHHHHHHHHHHHHHhc----------cccHHHHHHH-HHHHH
Confidence            888888888889999999987 57899999999999999999999888776643          2666666333 33333


Q ss_pred             HHhhhhccccCccccccc-CCC----cchhhhHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhccCccch
Q 014600          216 FVGIFLSRTEEPRLKMGL-RGN----SHARISWAYWFKKILYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQS  286 (422)
Q Consensus       216 ~~~i~~~~~~E~~~~~~~-~~~----~~~~~~~~~~~~n~~f~~~~~~~~~~~~~~~~~~~y~~~y~~~~~~l~~~  286 (422)
                      ..+++.+.++|++.++++ +.+    .+..+.++.+.+||.++...+...+.+.......+++|.|+.+..+.+..
T Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~  261 (1140)
T PRK06814        186 LGWLASLFIPKTGNAAPDLKIDRNIIRSTITLLKYAKADKRIWLAILGISWFWLVGAVVLSQLPLLAKETLGGDEN  261 (1140)
T ss_pred             HHHHHHhhCCCCCCCCCCCeeccchHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCchH
Confidence            334445556665332111 111    12335678889999988877777776677777788999999988777654

>PRK15075 citrate-proton symporter; Provisional

Probab=99.59  E-value=2.9e-12  Score=129.59  Aligned_cols=249  Identities=13%  Similarity=0.037  Sum_probs=141.3

Q ss_pred             eeeeeccchhHHHHHHHHHHHHHHHHHHhCCChhHHHHHH-HH-----HHHHhhhhhhhhhhhhcccCCchhHHHHHHHH
Q 014600           26 VLYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVM-LS-----GQIADGFATIFIGELIDRFGHFKIWHGAGSVL   99 (422)
Q Consensus        26 ~~~y~~g~~~~~~~~~~~~~~l~~f~t~~gls~~~~g~i~-~i-----~~l~~ai~~p~~G~lsDr~Grrrp~ll~g~i~   99 (422)
                      ..+..++.+.........+...|...+|.+.+..+.+.+. +.     ..+...+..++.|+++||+||||.++ .+...
T Consensus        17 ~~~~~~~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~-~~~~~   95 (434)
T PRK15075         17 ILRVTSGNFLEMFDFFLFGFYATAIAKTFFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRVGRRKGLI-VTLSI   95 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhchHHHHH-HHHHH
Confidence            4445555555555556666666665566687776654332 22     22333467889999999999999854 56666


Q ss_pred             HHHHHHHhhcCccCccccCCccch--hhhHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCccchhhHHHHHHHHHHHHHH
Q 014600          100 VAVSFSSVFGGCMPCRILSTSTLK--VETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANL  177 (422)
Q Consensus       100 ~~i~~~~lf~~~~p~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~p~~al~~~~t~~~~eR~~l~~~~~~~~~ig~~  177 (422)
                      ..++..++-.       .++....  +.....++.+++.+++.+....+..++.+|+.+ +++|++..++......+|..
T Consensus        96 ~~~~~~l~~~-------~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p-~~~rg~~~~~~~~~~~~g~~  167 (434)
T PRK15075         96 MASGTLLIAF-------VPGYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIAT-PGRKGFYTSWQSASQQVAVV  167 (434)
T ss_pred             HHHHHHHHHh-------CCcHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCC-cccchHHHHHHHHHHHHHHH
Confidence            6666554321       1111100  001122334456777777766667789999986 68999999998888777777


Q ss_pred             HHHHHHHHHHhhccCCCCCchHHHHHHHHHHHHHHHHHHHhhhhccccCcccccccCCCcchhhhHHHHHHhHHHHHH-H
Q 014600          178 SLYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISWAYWFKKILYYQV-A  256 (422)
Q Consensus       178 l~~~~~~~l~~~~~~~g~~~~~~~~~~~~~i~~~i~~i~~~i~~~~~~E~~~~~~~~~~~~~~~~~~~~~~n~~f~~~-~  256 (422)
                      +++.++..+...+...  .....+||+.+++..+...+ ........||.+...+++++.+.++.++...|+++.+.. .
T Consensus       168 ~g~~~g~~l~~~~~~~--~~~~~gWr~~f~~~~~~~~~-~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (434)
T PRK15075        168 FAALLGYLLNQWLSPA--QMAEWGWRIPFLIGCLIVPF-IFLIRRSLEETEEFLARKHRPSMREIFRSLAANWRIVLAGM  244 (434)
T ss_pred             HHHHHHHHHHHhCCHH--HHhccchHHHHHHHHHHHHH-HHHHHHhcCCCHHHHHhhhccccccHHHHHHHhHHHHHHHH
Confidence            7766655544322100  00235899888764333221 111122233322100111122233445566677665433 2


Q ss_pred             HHHHHHHHHHHhhhHHHHHHhhhccCccch
Q 014600          257 LVYMLTRLVVNVSQAYLAFYVINDLRMGQS  286 (422)
Q Consensus       257 ~~~~~~~~~~~~~~~y~~~y~~~~~~l~~~  286 (422)
                      ...++..........|.|.|+++..+++..
T Consensus       245 ~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~  274 (434)
T PRK15075        245 LMVAMTTVSFYLITVYTPTFGKTVLHLSAA  274 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCCHH
Confidence            333334455567788999999887777544

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=99.59  E-value=2.2e-13  Score=137.94  Aligned_cols=152  Identities=15%  Similarity=-0.029  Sum_probs=105.2

Q ss_pred             CChhHHHHHHHHHHHHhhhhhhhhhhhhcccCCchhHHHHHHHHHHHHHHHhhcCccCccccCCccchhhhHHHHHHHHH
Q 014600           56 LSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVETISYCVFAAI  135 (422)
Q Consensus        56 ls~~~~g~i~~i~~l~~ai~~p~~G~lsDr~Grrrp~ll~g~i~~~i~~~~lf~~~~p~~~~~~~~~~~~~~~~~~~~~l  135 (422)
                      .+..+.|++.++..+..++..|+.|+++||+||||. ++.+..+.+++..+...  .+     .....   ..+++.+.+
T Consensus        68 ~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~-~~~~~~~~~~~~~~~~~--~~-----~~~~~---~~~~~~r~l  136 (481)
T TIGR00879        68 YSSSLWGLVVSIFLVGGFIGALFAGWLSDRFGRKKS-LLIIALLFVIGAILMGL--AA-----FALSV---EMLIVGRVL  136 (481)
T ss_pred             CChhHHHHHHHHHHHHHHHHHHHhhHhhhhhhhHHH-HHHHHHHHHHHHHHHHH--hc-----cccch---HHHHHHHHH
Confidence            448999999999999999999999999999999887 45666666666555421  11     11111   122333456


Q ss_pred             HHHHHHHHHhhhhhhhhhccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchHHHHHHHHHHHHHHHHH
Q 014600          136 FNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCC  215 (422)
Q Consensus       136 ~~~~~~~~~~p~~al~~~~t~~~~eR~~l~~~~~~~~~ig~~l~~~~~~~l~~~~~~~g~~~~~~~~~~~~~i~~~i~~i  215 (422)
                      .+++.+.......+++.|+.+ +++|++..++.+.+..+|..+++.+. ......      ....+|++.+.+.++..++
T Consensus       137 ~G~~~~~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~G~~~~~~~~-~~~~~~------~~~~~w~~~f~~~~~~~~~  208 (481)
T TIGR00879       137 LGIGVGIASALVPMYLSEIAP-KALRGALTSLYQLAITFGILVAYGFG-SGKVSL------NNTLGWRIPLGLQLIPAGL  208 (481)
T ss_pred             HHhhhhHHHhHHHHHHHccCC-hhhhhhhhhHHHHHHHHHHHHHHHHH-HHhhcC------CCCccHHHHHHHHHHHHHH
Confidence            788888888888899999986 67899999998888888888877654 000111      1234899888875554444


Q ss_pred             HHhhhhccccCc
Q 014600          216 FVGIFLSRTEEP  227 (422)
Q Consensus       216 ~~~i~~~~~~E~  227 (422)
                      . ++..+.++|.
T Consensus       209 ~-~~~~~~l~~~  219 (481)
T TIGR00879       209 L-FLGLFFLPES  219 (481)
T ss_pred             H-HHHHhcCCCC
Confidence            3 3344555664

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>PRK11043 putative transporter; Provisional

Probab=99.59  E-value=5.5e-12  Score=126.02  Aligned_cols=215  Identities=13%  Similarity=0.085  Sum_probs=135.8

Q ss_pred             HHHHHHHHH---HHHhCCChhHHHHHHHHHHHHhhhhhhhhhhhhcccCCchhHHHHHHHHHHHHHHHhhcCccCccccC
Q 014600           42 CWFTYLLLF---LTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILS  118 (422)
Q Consensus        42 ~~~~~l~~f---~t~~gls~~~~g~i~~i~~l~~ai~~p~~G~lsDr~Grrrp~ll~g~i~~~i~~~~lf~~~~p~~~~~  118 (422)
                      ....|+|.+   .++.|.++.++|++.++..+...+..|+.|+++||+||||. +..+.....++..+...       .+
T Consensus        21 ~~~~~~p~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~-~~~~~~~~~~~~~~~~~-------~~   92 (401)
T PRK11043         21 ATDMYLPAFKAIQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPV-LLAGLSLFALGSLGMLW-------VE   92 (401)
T ss_pred             HHHHHHhhHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHH-HHHHHHHHHHHHHHHHH-------hc
Confidence            334444443   34449999999999999999999999999999999999887 55666666665544321       11


Q ss_pred             CccchhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCch
Q 014600          119 TSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADL  198 (422)
Q Consensus       119 ~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~al~~~~t~~~~eR~~l~~~~~~~~~ig~~l~~~~~~~l~~~~~~~g~~~~  198 (422)
                        +.+    ...+...+.+++.+...+...++..|..+ +++|.+..+.......++..+++.+++.+.+          
T Consensus        93 --~~~----~l~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~----------  155 (401)
T PRK11043         93 --SAA----QLLVLRFVQAVGVCSAAVIWQALVIDRYP-AQKANRVFATIMPLVALSPALAPLLGAWLLN----------  155 (401)
T ss_pred             --CHH----HHHHHHHHHHhhhHHHHHHHHHHHHHhcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------
Confidence              122    11222345666666666667788888875 4567777666666666666666655544432          


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhccccCcccccccCCCcchhhhHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHhh
Q 014600          199 ENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISWAYWFKKILYYQVALVYMLTRLVVNVSQAYLAFYVI  278 (422)
Q Consensus       199 ~~~~~~~~~i~~~i~~i~~~i~~~~~~E~~~~~~~~~~~~~~~~~~~~~~n~~f~~~~~~~~~~~~~~~~~~~y~~~y~~  278 (422)
                      ..+|++.+.+.+++.++..++.++ .+|++.++   ++++.++++++++|||+++...+.+.+..........+.|.|..
T Consensus       156 ~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~  231 (401)
T PRK11043        156 HFGWQAIFATLFAITLLLILPTLR-LKPSKKAR---KQSQDALTFKQLLKSKTYLGNVLIFAACSAAFFAWLTGSPFILE  231 (401)
T ss_pred             cCChHHHHHHHHHHHHHHHHHHHH-cCCCCCcc---ccchHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence            237888877776666665544433 34432221   11223456788899998876555444444444455667787775


Q ss_pred             hccCccch
Q 014600          279 NDLRMGQS  286 (422)
Q Consensus       279 ~~~~l~~~  286 (422)
                      + .+++..
T Consensus       232 ~-~g~s~~  238 (401)
T PRK11043        232 Q-MGYSPA  238 (401)
T ss_pred             H-cCCCHH
Confidence            4 466544

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=99.59  E-value=1.2e-13  Score=136.21  Aligned_cols=310  Identities=12%  Similarity=0.082  Sum_probs=155.6

Q ss_pred             eeeeeeeccchhHHHHHHHHHHHHHHHHHHh-CCChhHHHHHHHHHHHHhhhhhhhhhhhhcccCCchhHHHHHHHHHH-
Q 014600           24 WSVLYYGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVA-  101 (422)
Q Consensus        24 ~~~~~y~~g~~~~~~~~~~~~~~l~~f~t~~-gls~~~~g~i~~i~~l~~ai~~p~~G~lsDr~Grrrp~ll~g~i~~~-  101 (422)
                      +..+.++...+..-+.++...+|++.+++|. |++++++|.++++..+...+.+|+.|.++||.|.||..+..-.++.. 
T Consensus         7 ~~~~~~s~~~f~~Ff~~gi~~pF~~iWL~~~~GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dklg~kK~Ll~~i~~l~~l   86 (412)
T PF01306_consen    7 KNYWWLSLFYFFYFFIWGIFLPFFPIWLTQVAGLSGTEIGIIFSAGSLFALLAQPVYGFISDKLGLKKHLLWFIAILLLL   86 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHTHHHHHHHHHHCTTCSHHHHHHHHHHHT
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCHHHHHHHHHHHHHHHHHHHHhHHHhcchhhhhHHHHHHHHHHHHH
Confidence            3455666666777778888999999999996 99999999999999999999999999999999977764433333222 


Q ss_pred             HHHHHhhcCccCccccCCccchhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhccCC-ccchhhHHHHHHHHHHHHHHHHH
Q 014600          102 VSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLN-STSRVVLTSCRNAFTMVANLSLY  180 (422)
Q Consensus       102 i~~~~lf~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~al~~~~t~~-~~eR~~l~~~~~~~~~ig~~l~~  180 (422)
                      .+-++.|. ..|.  -+ .+.+   +..++..+.+++.+........++..+..+. .-|-++   .|. ++.+|..+++
T Consensus        87 ~~pff~~v-~~pl--l~-~n~~---lg~iig~i~l~~~f~~~~~~~Ea~~er~sr~~~feYG~---~R~-wGSig~ai~s  155 (412)
T PF01306_consen   87 FGPFFIYV-FGPL--LQ-SNFW---LGAIIGGIYLGLVFNAGVPLSEAYAERVSRRNGFEYGR---ARM-WGSIGFAIAS  155 (412)
T ss_dssp             CHHHHHHT-HHHH--HH-TT-H---HHHHHTTTTTTTTTTTHHHHHHHHHHHHHHHHSS-HHH---HHH-HHHHHHHHHH
T ss_pred             HHHHHHHH-HHHH--HH-HHHH---HHHHHHHHHHHHHHcccchHHHHHHHHHHHHhcCCcch---HHH-HhhHHHHHHH
Confidence            22222221 0120  00 0110   1111101112222222222223333333211 112233   343 3445555555


Q ss_pred             HHHHHHHhhccCCCCCchHHHHHHHHHHHHHHHHHHHhhhhccccCcccc--ccc--C-CCcc-hhhhHHHHHHhHHHHH
Q 014600          181 AIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLK--MGL--R-GNSH-ARISWAYWFKKILYYQ  254 (422)
Q Consensus       181 ~~~~~l~~~~~~~g~~~~~~~~~~~~~i~~~i~~i~~~i~~~~~~E~~~~--~~~--~-~~~~-~~~~~~~~~~n~~f~~  254 (422)
                      .+++.+++..       .    ...+++....+++..++.++.-+|++.+  .++  + ++++ ..++..+++|+|++|.
T Consensus       156 ~~~G~L~~i~-------p----~~~fwi~s~~~~il~lll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~k~~~fw~  224 (412)
T PF01306_consen  156 LLAGILFNIN-------P----NIIFWIASAAAIILLLLLLLLKPDVPPQAEVADALGAKKDKVSLKDVLSLFKMRNFWF  224 (412)
T ss_dssp             HHHHHHHHHH-------H----HHHHHHHHHHHHHHHHHHHSS---SSSSS-SSTTSSS------HHHHHHHTTSHHHHH
T ss_pred             HHhheeeeeC-------c----cHHHHHHHHHHHHHHHHHHHcCCcCchhhhhhcccccCCCCCcHHHHHHHhcchhHHH
Confidence            5555565431       1    1223333333333333333332222211  111  1 1111 1234568899999988


Q ss_pred             HHHHHHHHHHHHHhhhHHHHHHhhhccC---ccchhH---------------hHHHHHH---------HHHHHHHH--HH
Q 014600          255 VALVYMLTRLVVNVSQAYLAFYVINDLR---MGQSAK---------------ALVPAII---------YICSFIVS--IL  305 (422)
Q Consensus       255 ~~~~~~~~~~~~~~~~~y~~~y~~~~~~---l~~~~~---------------~~iP~~~---------~~~~~~~~--~~  305 (422)
                      +.+..+......+..-..++.|.....+   .+....               ...|.++         .+.+.+..  +.
T Consensus       225 ~~l~v~g~~~~Y~vfdqqf~~y~~~~f~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~  304 (412)
T PF01306_consen  225 FVLFVIGVAAIYDVFDQQFPIYFASFFQSAGQGNQMYGYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRII  304 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcccccChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHH
Confidence            7665555444445555556666654322   121111               1223322         01111110  11


Q ss_pred             H-------------HHH-H----------hhhhhhhhcCccccccceehhh-HHHHHHHHHHHHHHHHHhHhhCCCc
Q 014600          306 L-------------QVT-G----------ISMQNVLVGEDLSGCAFVCGTL-SFLDKMSCGIAVYVLQSYQSMSPTV  357 (422)
Q Consensus       306 ~-------------~v~-~----------~~~~~~~~g~r~~g~~~~~s~~-~~~~K~~~a~~~~i~g~~l~~~Gy~  357 (422)
                      +             +.. +          .-+.+...++|...+  .+... .+...+|..+.+.+.|.+.+..||+
T Consensus       305 ~~~~~~~~~~i~~~klLH~~e~~l~lva~fkYI~~~fd~rlsAt--~y~v~~~~~~~~~~~i~s~~~G~lyd~~G~~  379 (412)
T PF01306_consen  305 GSGFATNPWVISLIKLLHALEFPLLLVAAFKYITAHFDKRLSAT--LYLVGFQFAKQIGIIILSPLAGYLYDRIGFQ  379 (412)
T ss_dssp             HHHT--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-GGGHHH--HHHHHHTTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhHHHH--HHHHHHHHHHHHHHHHHhhhHHhhHhhcCcH
Confidence            1             000 1          112455667787777  77774 7889999999999999999888875

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.59  E-value=6.9e-13  Score=134.15  Aligned_cols=266  Identities=11%  Similarity=0.065  Sum_probs=190.2

Q ss_pred             CCChhHHHHHHHHHHHHhhhhhhhhhhhhcccCCchhHHHHHHHHHHHHHHHhhcCccCccccCCccchhhhHHHHHHHH
Q 014600           55 GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVETISYCVFAA  134 (422)
Q Consensus        55 gls~~~~g~i~~i~~l~~ai~~p~~G~lsDr~Grrrp~ll~g~i~~~i~~~~lf~~~~p~~~~~~~~~~~~~~~~~~~~~  134 (422)
                      ..+..+-|++++...+...+++...|++.||+|-||++. .+.+..++...+     .|..  ...+.+    ..+++++
T Consensus        69 ~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~-~~~~~sa~~t~l-----~P~a--a~~~~~----~~~~~R~  136 (466)
T KOG2532|consen   69 DWSSTEKGLIFSSFFWGYILGQIPGGYLADKFGARRVFF-ISGLISALLTLL-----TPLA--ASIGFY----LLLVLRF  136 (466)
T ss_pred             cCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHcCchHHHH-HHHHHHHHHHHH-----HHHH--HHhcch----hhHHHHH
Confidence            456789999999999999999999999999999999954 566666666544     2421  112221    2245567


Q ss_pred             HHHHHHHHHHhhhhhhhhhccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchHHHHHHHHHHHHHHHH
Q 014600          135 IFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGC  214 (422)
Q Consensus       135 l~~~~~~~~~~p~~al~~~~t~~~~eR~~l~~~~~~~~~ig~~l~~~~~~~l~~~~~~~g~~~~~~~~~~~~~i~~~i~~  214 (422)
                      +.|++++........+...+.+ ++||++..++-..+..+|.++..-+.+.+.+.         ..||+..+++.+.+++
T Consensus       137 lqGl~~g~~~pa~~~i~~~W~P-~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s---------~~GW~sifY~~g~~g~  206 (466)
T KOG2532|consen  137 LQGLGQGVLFPAIGSILAKWAP-PNERSTFIAILTAGSQLGTIITMPVSGLLCES---------SLGWPSIFYVFGIVGL  206 (466)
T ss_pred             HhHHHHhHHHhhhhceeeeECC-HHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcc---------CCCCchHHHHHHHHHH
Confidence            8899999999999999999987 89999999999988888888766555444432         3589999999999999


Q ss_pred             HHHhhhhccccCcccccc-----c-----C----C--CcchhhhHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHhh
Q 014600          215 CFVGIFLSRTEEPRLKMG-----L-----R----G--NSHARISWAYWFKKILYYQVALVYMLTRLVVNVSQAYLAFYVI  278 (422)
Q Consensus       215 i~~~i~~~~~~E~~~~~~-----~-----~----~--~~~~~~~~~~~~~n~~f~~~~~~~~~~~~~~~~~~~y~~~y~~  278 (422)
                      +..++.++..+|+|.+++     |     +    +  +++.+.++++++|++++|.+.+..++...+......|.|.|+.
T Consensus       207 i~~~~w~~~~~d~P~~h~~is~~El~~I~~~k~~~~~~~~~~vP~~~i~ts~~vwai~~~~f~~~~~~~~l~~y~PtY~~  286 (466)
T KOG2532|consen  207 IWFILWFLFYSDSPSKHPNISEKELKYIEKGKSEAHVKKKPPVPYKAILTSPPVWAIWISAFGGNWGFYLLLTYLPTYLK  286 (466)
T ss_pred             HHHHHHHHHhcCCcccCCCCCHHHHHHHHhcccccccCCCCCCCHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence            999988888887664321     1     0    0  1113457999999999999988888888889999999999999


Q ss_pred             hccCccchhHh---HHHHHHH-HHHHHHHHHHHHHHhhhhhhhhcCccccccceehhhHHHHHHHHHHHHHHHHHhHhhC
Q 014600          279 NDLRMGQSAKA---LVPAIIY-ICSFIVSILLQVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQSMS  354 (422)
Q Consensus       279 ~~~~l~~~~~~---~iP~~~~-~~~~~~~~~~~v~~~~~~~~~~g~r~~g~~~~~s~~~~~~K~~~a~~~~i~g~~l~~~  354 (422)
                      +.++++-...+   .+|.+.. +..++.         +..+|+.-.|.-..       +..+|+-+.++....+..+-..
T Consensus       287 ~VL~f~v~~~G~~salP~l~~~~~k~~~---------g~lsD~l~~~~ls~-------t~~rkifn~i~~~~~ai~l~~l  350 (466)
T KOG2532|consen  287 EVLGFDVRETGFLSALPFLAMAIVKFVA---------GQLSDRLTFRILSE-------TTVRKIFNTIAFGGPAVFLLVL  350 (466)
T ss_pred             HHhCCChhhhhHHHHHHHHHHHHHHHHH---------HHHHHHHhhccCch-------HhHHHHHHhHHHHHHHHHHHee
Confidence            99998876654   4565442 222222         22233333321122       3556666666666666666666


Q ss_pred             CCcc
Q 014600          355 PTVL  358 (422)
Q Consensus       355 Gy~~  358 (422)
                      +|.+
T Consensus       351 ~~~~  354 (466)
T KOG2532|consen  351 AFTS  354 (466)
T ss_pred             eecC
Confidence            6654

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=99.58  E-value=2e-12  Score=132.61  Aligned_cols=171  Identities=10%  Similarity=-0.043  Sum_probs=123.4

Q ss_pred             ccchhHHHHHHHHHHHHHHHHHHh-CCChhHHHHHHHHHHHHhhhhhhhhhhhhcc-cCCchhHHHHHHHHHHHHHHHhh
Q 014600           31 SGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDR-FGHFKIWHGAGSVLVAVSFSSVF  108 (422)
Q Consensus        31 ~g~~~~~~~~~~~~~~l~~f~t~~-gls~~~~g~i~~i~~l~~ai~~p~~G~lsDr-~Grrrp~ll~g~i~~~i~~~~lf  108 (422)
                      ...+.....++...++++.|+++. |++..+++++......+..+..|+.|+++|| +||||. ++.|.+..+++..+++
T Consensus        21 ~~~~~er~~~y~~~~~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~-~~~g~~~~~~g~~~~~   99 (489)
T PRK10207         21 FVELWERFGYYGVQGILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRT-IVLGAIVLAIGYFMTG   99 (489)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHH-HHHHHHHHHHHHHHHH
Confidence            445667788888889999999987 9999999999999999999999999999999 999998 5578888888776655


Q ss_pred             cCccCccccCCccchhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCcc-chhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 014600          109 GGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNST-SRVVLTSCRNAFTMVANLSLYAIAFIVF  187 (422)
Q Consensus       109 ~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~al~~~~t~~~~-eR~~l~~~~~~~~~ig~~l~~~~~~~l~  187 (422)
                      .       +++  .. . ..+ +...+.+++.+.......+++.|..++++ +|++..++.+...++|..+++.+++.+.
T Consensus       100 ~-------~~~--~~-~-ll~-~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~  167 (489)
T PRK10207        100 M-------SLL--KP-D-LIF-IALGTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIA  167 (489)
T ss_pred             H-------hcc--ch-h-HHH-HHHHHHHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHH
Confidence            3       111  11 1 111 12235677777777777899999987544 4577788888899999998887765554


Q ss_pred             hhccCCCCCchHHHHHHHHHHHHHHHHHHHhhhhcccc
Q 014600          188 SVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTE  225 (422)
Q Consensus       188 ~~~~~~g~~~~~~~~~~~~~i~~~i~~i~~~i~~~~~~  225 (422)
                      +          ..||++.+.+.++ +++..++.+...|
T Consensus       168 ~----------~~gw~~~F~i~~i-~~~~~~~~~~~~~  194 (489)
T PRK10207        168 D----------KFGYSVTYNLCGA-GLIIALLVYFACR  194 (489)
T ss_pred             H----------hhChHHHHHHHHH-HHHHHHHHHHHcc
Confidence            3          2378888877543 3333333333334

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=99.53  E-value=1.2e-11  Score=127.51  Aligned_cols=164  Identities=17%  Similarity=0.136  Sum_probs=111.0

Q ss_pred             CCChhHHHHHHHHHHHHhhhhhhhhhhhhcccCCchhHHHHHHHHHHHHHHHhhcCccCccccCCccchhhhHHHHHHHH
Q 014600           55 GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVETISYCVFAA  134 (422)
Q Consensus        55 gls~~~~g~i~~i~~l~~ai~~p~~G~lsDr~Grrrp~ll~g~i~~~i~~~~lf~~~~p~~~~~~~~~~~~~~~~~~~~~  134 (422)
                      ..+..+.+++.....+...+..++.|+++||+|||+.+ ..+.++..++..+...  .+     +.........+++.++
T Consensus        52 ~~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~~Grr~~~-~~~~~~~~v~~~~~~~--~~-----~~~~~~~~~~~~~~r~  123 (502)
T TIGR00887        52 PLPSSVSAAVNGSASIGTLAGQLFFGWLADKLGRKRVY-GMELIIMIIATVASGL--SP-----GSSPKSVMATLCFWRF  123 (502)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHH-HHHHHHHHHHHHHHHH--cc-----CcccchHHHHHHHHHH
Confidence            35567789999999999999999999999999999884 4566666666544331  11     1111111123344456


Q ss_pred             HHHHHHHHHHhhhhhhhhhccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhccC-CCCC------------chHHH
Q 014600          135 IFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTA-KTHA------------DLENQ  201 (422)
Q Consensus       135 l~~~~~~~~~~p~~al~~~~t~~~~eR~~l~~~~~~~~~ig~~l~~~~~~~l~~~~~~-~g~~------------~~~~~  201 (422)
                      +.+++.+....+..++..|.++ +++|++..++......+|.++++.++..+...+.. .+..            ....+
T Consensus       124 l~G~~~g~~~~~~~~~~~e~~p-~~~Rg~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (502)
T TIGR00887       124 WLGVGIGGDYPLSAIITSEFAT-KKWRGAMMAAVFAMQGFGILAGAIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYM  202 (502)
T ss_pred             HHHHHHhhhhHHHHHHHHHhcC-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccchhccc
Confidence            7888888888888999999987 68999999999888889888887776554432210 0000            01237


Q ss_pred             HHHHHHHHHHHHHHHHhhhhccccCcc
Q 014600          202 YRWIAYSSIFIGCCFVGIFLSRTEEPR  228 (422)
Q Consensus       202 ~~~~~~i~~~i~~i~~~i~~~~~~E~~  228 (422)
                      ||+.+.+.++.+++. ++..+.+||.|
T Consensus       203 WR~~~~~~~ip~~i~-~~~~~~lpESp  228 (502)
T TIGR00887       203 WRILIGFGAVPALLA-LYFRLTIPETP  228 (502)
T ss_pred             HHHHHHHHHHHHHHH-HHHHHhCCCCH
Confidence            999887665555543 34456678864

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>TIGR00788 fbt folate/biopterin transporter

Probab=99.52  E-value=5e-12  Score=129.11  Aligned_cols=296  Identities=11%  Similarity=0.023  Sum_probs=169.8

Q ss_pred             hhHHHHHHHHHHHHHHHHHHh-CCChhHHHHHHHHHHHHhhhhhhhhhhhhccc---C-CchhHHHHHHHHHH-HHHHHh
Q 014600           34 MLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRF---G-HFKIWHGAGSVLVA-VSFSSV  107 (422)
Q Consensus        34 ~~~~~~~~~~~~~l~~f~t~~-gls~~~~g~i~~i~~l~~ai~~p~~G~lsDr~---G-rrrp~ll~g~i~~~-i~~~~l  107 (422)
                      +..++. .+...-+++++.+. |+++++++.......+-..+ .|++|.++||+   | |||+|++.+.+... +.+.. 
T Consensus        36 ~~qGl~-~l~~~~~~~~l~~~lg~s~~~i~~~~sl~~lpw~~-K~l~g~l~D~~~i~G~rRr~~l~~~~~l~~~~~~~~-  112 (468)
T TIGR00788        36 FVKGIA-GLMRLPLSPMLTDDLGLDGARYQRLVGLSSLGWAL-KPFAGVMSDTFPLFGYTKRWYLVLSGLLGSAILYGL-  112 (468)
T ss_pred             HHhhHH-HHhhhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHH-HHHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHHh-
Confidence            455555 55566677888876 99999998888888887776 77899999986   4 57888888776653 33221 


Q ss_pred             hcCccCccccCCccchhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCccchhh---HHHHHHHHHHHHHHHHHHHHH
Q 014600          108 FGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVV---LTSCRNAFTMVANLSLYAIAF  184 (422)
Q Consensus       108 f~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~al~~~~t~~~~eR~~---l~~~~~~~~~ig~~l~~~~~~  184 (422)
                      .    +  ..+  +..   ..+.+...+.+++.+..+++..++..|..+  +++..   +.++.....++|.++++.+++
T Consensus       113 l----~--~~~--~~~---~~~~~~~~l~~~~~a~~dv~~da~~~e~~~--~~~~~~~~~~s~~~~~~~~G~~vg~~l~G  179 (468)
T TIGR00788       113 L----P--GKV--SSA---KVAAAFIFLAALAKALYDVLVDSLYSERIR--ESPSAGPSLVSWMWGASATGGLISSLLGG  179 (468)
T ss_pred             c----c--ccc--chH---HHHHHHHHHHHHHHHHHHHhHHHHHhhhhh--cCCCcCCCeeeHHHHHHHHHHHHHHHHHH
Confidence            1    1  011  111   111112235778888899999999999987  33332   333333334577777777776


Q ss_pred             HHHhhccCCCCCchHHHHHHHHHHHHHHHHHHHhhhhccccCccc--ccccCCC---------c----ch---hhhHHHH
Q 014600          185 IVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRL--KMGLRGN---------S----HA---RISWAYW  246 (422)
Q Consensus       185 ~l~~~~~~~g~~~~~~~~~~~~~i~~~i~~i~~~i~~~~~~E~~~--~~~~~~~---------~----~~---~~~~~~~  246 (422)
                      .+.+.          .+|+..+.+.+.+.++. .+..++.+|++.  .++.+++         .    ..   .+.++..
T Consensus       180 ~l~~~----------~~~~~~f~~~a~l~ll~-~~~~~~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  248 (468)
T TIGR00788       180 PLLDK----------TLTRILFLITAALLLLQ-LFVSNLSKERRAFVRPRIGTYLEMNMALLTLGVLANVKVQILGLRGA  248 (468)
T ss_pred             HHHHh----------cCcchHHHHHHHHHHHH-HHHHHhcccccccccccccccchhhhhhhhhhHHHHHHHHHHHHHHH
Confidence            66543          25777777766666655 444566788541  1110110         0    01   1234455


Q ss_pred             HHhHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhccCccchhHhH---------HHHHH--------------HHHHHHHH
Q 014600          247 FKKILYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKAL---------VPAII--------------YICSFIVS  303 (422)
Q Consensus       247 ~~n~~f~~~~~~~~~~~~~~~~~~~y~~~y~~~~~~l~~~~~~~---------iP~~~--------------~~~~~~~~  303 (422)
                      +|+|..+..++..++.+....+...++..+..+..++++...+.         ++...              ...+.++.
T Consensus       249 l~~~~i~~~l~fifl~~~~~~~~~~~~f~~~~~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~  328 (468)
T TIGR00788       249 IQLLEIAKPLIFIFLSYANLPGASGSVFCATTQCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLY  328 (468)
T ss_pred             HhcHHHHHHHHHHHHHHhhcCCCCceeEEEEcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHH
Confidence            77887766443333311222222222222334556666654321         00000              01111111


Q ss_pred             HHHH------------------------------HH-H------hhhhhhhhcCccccccceehhhHHHHHHHHHHHHHH
Q 014600          304 ILLQ------------------------------VT-G------ISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYV  346 (422)
Q Consensus       304 ~~~~------------------------------v~-~------~~~~~~~~g~r~~g~~~~~s~~~~~~K~~~a~~~~i  346 (422)
                      .++.                              +. +      ..+......++.||+  .|+..+.++.+|..++..+
T Consensus       329 ~~~~~~~~~l~~~~~~~~gi~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~p~~~egt--~~al~~s~~~lg~~v~~~~  406 (468)
T TIGR00788       329 TLSSLFDLILVKRWNLAFGISDEVFVLGDSIIAEVLAQLKFMPFLVLLARLCPSGCESS--VFALLASILHLGSSVSGFL  406 (468)
T ss_pred             HHHHhCceeeeeccccccCCCCeeeeeehhHHHHHHHHHHHccHHHHHHHhCCCCceeh--HHHHHHHHHHHHHHHHHHH
Confidence            1100                              00 0      111234456778999  9999999999999999999


Q ss_pred             HHHhHhhCCCcc
Q 014600          347 LQSYQSMSPTVL  358 (422)
Q Consensus       347 ~g~~l~~~Gy~~  358 (422)
                      .|.+.+..|-+.
T Consensus       407 gg~l~~~~g~~~  418 (468)
T TIGR00788       407 GVLLMETIGITC  418 (468)
T ss_pred             HHHHHHHcCCCc
Confidence            999999998443

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=99.51  E-value=4.8e-12  Score=127.45  Aligned_cols=211  Identities=7%  Similarity=-0.008  Sum_probs=143.6

Q ss_pred             hCCChhHHHHHHHHHHHHhhhhhhhhhhhhcccCCchhHHHHHHHHHHHHHHHhhcCccCccccCCccchhhhHHHHHHH
Q 014600           54 IGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVETISYCVFA  133 (422)
Q Consensus        54 ~gls~~~~g~i~~i~~l~~ai~~p~~G~lsDr~Grrrp~ll~g~i~~~i~~~~lf~~~~p~~~~~~~~~~~~~~~~~~~~  133 (422)
                      .|+|+.+.+++.++..+..++...+.|++.||+|.||. +.++....++...++-. .++ +  ...+.    ..+++..
T Consensus        65 ~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v-~~~~~ll~~i~~~~~~~-a~~-~--~~~s~----~~lli~r  135 (462)
T PRK15034         65 FNFTTDQLFLLTALPSVSGALLRVPYSFMVPIFGGRRW-TVFSTAILIIPCVWLGI-AVQ-N--PNTPF----GIFIVIA  135 (462)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHH-HHHHHHHHHHHHHHHHH-HHc-c--cCCCH----HHHHHHH
Confidence            49999999999999999999998888999999999987 44566666655543321 000 0  01122    2233334


Q ss_pred             HHHHHHHHHHHhhhhhhhhhccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHh-----hccCCC---CCchHHHHHHH
Q 014600          134 AIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFS-----VSTAKT---HADLENQYRWI  205 (422)
Q Consensus       134 ~l~~~~~~~~~~p~~al~~~~t~~~~eR~~l~~~~~~~~~ig~~l~~~~~~~l~~-----~~~~~g---~~~~~~~~~~~  205 (422)
                      .+.+++ +....+....++++.+ ++||+++.++....+++|..+.+.+.++++.     .++..+   ..+...+|+..
T Consensus       136 ~l~Gig-g~~f~~~~~~vs~wfp-~~~rG~A~Gi~~g~G~~G~~l~~~l~p~~i~~~l~~~~G~~~~~~~~g~~~~~~~~  213 (462)
T PRK15034        136 LLCGFA-GANFASSMGNISFFFP-KAKQGSALGINGGLGNLGVSVMQLVAPLVIFVPVFAFLGVNGVPQADGSVMSLANA  213 (462)
T ss_pred             HHHHHH-HHhHHHHHHHHHHHCC-HhHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHH
Confidence            466665 5566778888888875 6889999999877778888777777655442     222100   00124567777


Q ss_pred             HHHHHHHHHHHHhhhhccccCcccccccCCCcchhhhHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhcc
Q 014600          206 AYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISWAYWFKKILYYQVALVYMLTRLVVNVSQAYLAFYVINDL  281 (422)
Q Consensus       206 ~~i~~~i~~i~~~i~~~~~~E~~~~~~~~~~~~~~~~~~~~~~n~~f~~~~~~~~~~~~~~~~~~~y~~~y~~~~~  281 (422)
                      ..+..++.++..++.++..++++.     ++.+ .++.++.+|||..|.+.+.|++......+...|+|+|..+..
T Consensus       214 ~~~~~~~~iv~~i~~~~~~~~~~~-----~~~~-~~~~~~vlk~~~~Wllslly~~tFG~fvg~s~~lp~~~~~~~  283 (462)
T PRK15034        214 AWIWVPLLAIATIAAWSGMNDIAS-----SRAS-IADQLPVLQRLHLWLLSLLYLATFGSFIGFSAGFAMLAKTQF  283 (462)
T ss_pred             HHHHHHHHHHHHHHHHHhCCCccc-----cccC-HHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            777777776766666666555321     1223 344567999999988888888877777777889999987754

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=99.49  E-value=3.5e-11  Score=123.18  Aligned_cols=164  Identities=12%  Similarity=-0.077  Sum_probs=121.1

Q ss_pred             eeeccchhHHHHHHHHHHHHHHHHHH---hCCChhHHHHHHHHHHHHhhhhhhhhhhhhcc-cCCchhHHHHHHHHHHHH
Q 014600           28 YYGSGHMLNDITAACWFTYLLLFLTD---IGLSPRGAAAVMLSGQIADGFATIFIGELIDR-FGHFKIWHGAGSVLVAVS  103 (422)
Q Consensus        28 ~y~~g~~~~~~~~~~~~~~l~~f~t~---~gls~~~~g~i~~i~~l~~ai~~p~~G~lsDr-~Grrrp~ll~g~i~~~i~  103 (422)
                      ......+...+.+....++++.|+++   .|++..++|.+..+..+...+..++.|+++|| +||||. ++.+.+..+++
T Consensus        14 ~l~~~~~~~~~~~~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~-l~~~~~~~~~g   92 (475)
T TIGR00924        14 TLFFVELWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKT-MVLGGIVLMLG   92 (475)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHH-HHHHHHHHHHH
Confidence            33456677788888888999999987   49999999999999999999999999999999 899998 56777888877


Q ss_pred             HHHhhcCccCccccCCccchhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCcc--chhhHHHHHHHHHHHHHHHHHH
Q 014600          104 FSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNST--SRVVLTSCRNAFTMVANLSLYA  181 (422)
Q Consensus       104 ~~~lf~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~al~~~~t~~~~--eR~~l~~~~~~~~~ig~~l~~~  181 (422)
                      ..++..       .+  +.. .   +.+...+.+++.+....+..++.++++++++  +|++..++.+...++|..+++.
T Consensus        93 ~~~~~~-------~~--~~~-~---~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~  159 (475)
T TIGR00924        93 HFMLAM-------SI--YPD-L---IFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPL  159 (475)
T ss_pred             HHHHHh-------cc--cHh-H---HHHHHHHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHH
Confidence            655432       11  111 1   1122235667777777788899999887543  4888888888899999988877


Q ss_pred             HHHHHHhhccCCCCCchHHHHHHHHHHHHHHHHH
Q 014600          182 IAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCC  215 (422)
Q Consensus       182 ~~~~l~~~~~~~g~~~~~~~~~~~~~i~~~i~~i  215 (422)
                      +.+.+.+          ..+|++.+.+.++..++
T Consensus       160 l~g~l~~----------~~g~~~~f~~~~~~~~~  183 (475)
T TIGR00924       160 LAGVIAE----------NYGYHVGFNLAAVGMVI  183 (475)
T ss_pred             HHHHHHH----------hcChHHHHHHHHHHHHH
Confidence            6654432          23688877766544333

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>TIGR00898 2A0119 cation transport protein

Probab=99.45  E-value=4.6e-11  Score=123.07  Aligned_cols=146  Identities=16%  Similarity=0.154  Sum_probs=104.5

Q ss_pred             hCCC---hhHHHHHHHHHHHHhhhhhhhhhhhhcccCCchhHHHHHHHHHHHHHHHhhcCccCccccCCccchhhhHHHH
Q 014600           54 IGLS---PRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVETISYC  130 (422)
Q Consensus        54 ~gls---~~~~g~i~~i~~l~~ai~~p~~G~lsDr~Grrrp~ll~g~i~~~i~~~~lf~~~~p~~~~~~~~~~~~~~~~~  130 (422)
                      .+++   +.+.|++.++..+...+..|+.|+++||+||||.+ +.+.+..+++..+...       +++  .    ..++
T Consensus       119 ~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~-~~~~~~~~i~~~~~~~-------~~~--~----~~~~  184 (505)
T TIGR00898       119 WDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVL-LLSTLVTAVSGVLTAF-------SPN--Y----TVFL  184 (505)
T ss_pred             ecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhccchHHH-HHHHHHHHHHHHHHHH-------ccc--H----HHHH
Confidence            3888   89999999999999999999999999999998874 5566666666544321       111  1    1233


Q ss_pred             HHHHHHHHHHHHHHhhhhhhhhhccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchHHHHHHHHHHHH
Q 014600          131 VFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYRWIAYSSI  210 (422)
Q Consensus       131 ~~~~l~~~~~~~~~~p~~al~~~~t~~~~eR~~l~~~~~~~~~ig~~l~~~~~~~l~~~~~~~g~~~~~~~~~~~~~i~~  210 (422)
                      +.+.+.+++.+.......++..|+.+ +++|++..+....+..+|.++++.++..    +         ..||+.+.+.+
T Consensus       185 ~~r~l~G~~~~~~~~~~~~~~~e~~~-~~~r~~~~~~~~~~~~~g~~~~~~~~~~----~---------~~wr~~~~~~~  250 (505)
T TIGR00898       185 VFRLLVGMGIGGIWVQAVVLNTEFLP-KKQRAIVGTLIQVFFSLGLVLLPLVAYF----I---------PDWRWLQLAVS  250 (505)
T ss_pred             HHHHHHHhhccchHHHHHHHhheecC-hhhhHHHHHHHHHHHHHHHHHHHHHHHH----h---------hHHHHHHHHHH
Confidence            34456788888878888899999986 6789998888777777776665443321    1         14888888877


Q ss_pred             HHHHHHHhhhhccccCcc
Q 014600          211 FIGCCFVGIFLSRTEEPR  228 (422)
Q Consensus       211 ~i~~i~~~i~~~~~~E~~  228 (422)
                      ++.++..+.. +.++|.+
T Consensus       251 i~~~~~~~~~-~~~~esp  267 (505)
T TIGR00898       251 LPTFLFFLLS-WFVPESP  267 (505)
T ss_pred             HHHHHHHHHH-HhcCCCh
Confidence            7766655444 5667753

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.45  E-value=2.5e-12  Score=123.28  Aligned_cols=204  Identities=12%  Similarity=0.055  Sum_probs=151.7

Q ss_pred             CCChhHHHHHHHHHHHHhhhhhhhhhhhhcccCCchhHHHHHHHHHHHHHHHhhcCccCccccCCccchhhhHHHHHHHH
Q 014600           55 GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVETISYCVFAA  134 (422)
Q Consensus        55 gls~~~~g~i~~i~~l~~ai~~p~~G~lsDr~Grrrp~ll~g~i~~~i~~~~lf~~~~p~~~~~~~~~~~~~~~~~~~~~  134 (422)
                      +-+.+++|+++....+...+.+|+.|.+.||.|+|-| +++|...+..+.++ |.      +.  .+..    ..++.+.
T Consensus       102 ~~e~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ip-m~~Gl~vmf~sTil-Fa------fg--~sy~----~l~vAR~  167 (464)
T KOG3764|consen  102 DRENTQIGLLFASKALVQLLVNPFFGNLIDRIGYKIP-MVAGLFVMFLSTIL-FA------FG--NSYP----MLFVARS  167 (464)
T ss_pred             cccccchhHHHHHHHHHHHHhcccchhhHHHhccccH-HHHHHHHHHHHHHH-HH------Hc--chhH----HHHHHHH
Confidence            4567899999999999999999999999999999999 56787777776654 32      11  2222    2234456


Q ss_pred             HHHHHHHHHHhhhhhhhhhccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchHHHHHHHHHHHHHHHH
Q 014600          135 IFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGC  214 (422)
Q Consensus       135 l~~~~~~~~~~p~~al~~~~t~~~~eR~~l~~~~~~~~~ig~~l~~~~~~~l~~~~~~~g~~~~~~~~~~~~~i~~~i~~  214 (422)
                      +.+++.++.++.-.+++++..++++||+++.++...+..+|-++++-+++.+.+.          .|+...|++.+++.+
T Consensus       168 LQgvgsA~~~tsglamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~----------~Gk~aPFlVL~~v~L  237 (464)
T KOG3764|consen  168 LQGVGSAFADTSGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEF----------AGKSAPFLVLAIVLL  237 (464)
T ss_pred             HhhhhHHHHHhhhHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhh----------cCCcCcHHHHHHHHH
Confidence            8999999999999999999999999999999999999999988887777666554          266778888888888


Q ss_pred             HHHhhhhccccCcccccccCCCcchhhhHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhccCccc
Q 014600          215 CFVGIFLSRTEEPRLKMGLRGNSHARISWAYWFKKILYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQ  285 (422)
Q Consensus       215 i~~~i~~~~~~E~~~~~~~~~~~~~~~~~~~~~~n~~f~~~~~~~~~~~~~~~~~~~y~~~y~~~~~~l~~  285 (422)
                      +-..+-++..+.++.++++.   .....+.+++++|.-+...+.-..++.+......-++.+..+.+..+.
T Consensus       238 ld~~L~l~vi~p~~~~~~~~---~~~~~~~~Ll~dP~I~~~agai~~~n~~lafLePtlslwm~e~m~~p~  305 (464)
T KOG3764|consen  238 LDGALQLLVIEPTEMDPDST---EQGTPMWSLLMDPYILLIAGAITFSNSSLAFLEPTLSLWMLETMFTPG  305 (464)
T ss_pred             HHHHHHHheeCccccCcccc---ccCccHHHHHhCchHhhhhcchhhccchHHHhCcccHHHHHHhccCCC
Confidence            87777766665543322111   112345778888876655555555556666667777888888777444

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=99.43  E-value=4.6e-11  Score=120.62  Aligned_cols=163  Identities=22%  Similarity=0.132  Sum_probs=109.3

Q ss_pred             HHHHHHHHHHh-CCChhHHHHHHHHHHHHhhhhhhhhhhhhcc---cC-CchhHHHHHHHHHHHHHHHhhcCccCccccC
Q 014600           44 FTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDR---FG-HFKIWHGAGSVLVAVSFSSVFGGCMPCRILS  118 (422)
Q Consensus        44 ~~~l~~f~t~~-gls~~~~g~i~~i~~l~~ai~~p~~G~lsDr---~G-rrrp~ll~g~i~~~i~~~~lf~~~~p~~~~~  118 (422)
                      ..-..+|++|. |+++++......+..+=. ..-|+.|.++|-   +| |||||++++.++.+++...+..  .|..   
T Consensus         9 ~~~~~~~l~~~l~ls~~~~~~~~~~~~lPw-~~Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~--~~~~---   82 (433)
T PF03092_consen    9 RLAIYPFLKDDLGLSPAQLQRLSSLASLPW-SIKPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLAL--LPAS---   82 (433)
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHhCch-HHhhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHh--cccc---
Confidence            33455677776 999999998888887733 358999999994   67 9999999998888665544331  3311   


Q ss_pred             CccchhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhccCC-ccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCc
Q 014600          119 TSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLN-STSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHAD  197 (422)
Q Consensus       119 ~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~al~~~~t~~-~~eR~~l~~~~~~~~~ig~~l~~~~~~~l~~~~~~~g~~~  197 (422)
                      ..+....    .+...+..+++.+.++...++..|..++ +++|+.+.+.......+|++++..+.+++.+..       
T Consensus        83 ~~s~~~~----~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~-------  151 (433)
T PF03092_consen   83 ESSAAIA----VVLLFLASFGYAFADVAADALVVELARREPESRGDLQSFVWGVRSVGSLVGSLLSGPLLDSF-------  151 (433)
T ss_pred             cchhhhH----HHHHHHHHHHHHHHHHhhhHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhcC-------
Confidence            1111111    1122357788999999999999999864 455788888888888889988888887776532       


Q ss_pred             hHHHHHHHHHHHHHHHHHHHhhhhccccC
Q 014600          198 LENQYRWIAYSSIFIGCCFVGIFLSRTEE  226 (422)
Q Consensus       198 ~~~~~~~~~~i~~~i~~i~~~i~~~~~~E  226 (422)
                         ++++.+.+.+.+..+..+...+..+|
T Consensus       152 ---~~~~~f~i~~~~~~l~~~~~~~~~~e  177 (433)
T PF03092_consen  152 ---GPQGVFLISAALPLLMLIVALFLLEE  177 (433)
T ss_pred             ---CCeEEehHHHHHHHHHHHHHHHhhhh
Confidence               22333444444444444444555565

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>TIGR00805 oat sodium-independent organic anion transporter

Probab=99.42  E-value=3.3e-12  Score=134.81  Aligned_cols=236  Identities=11%  Similarity=0.053  Sum_probs=161.1

Q ss_pred             HHHHHHhCCChhHHHHHHHHHHHHhhhhhhhhhhhhcccCCchhHHHHHHHHHHHHHHHhhcCccCccccC---------
Q 014600           48 LLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILS---------  118 (422)
Q Consensus        48 ~~f~t~~gls~~~~g~i~~i~~l~~ai~~p~~G~lsDr~Grrrp~ll~g~i~~~i~~~~lf~~~~p~~~~~---------  118 (422)
                      +..-.+.+++..+.|++.+..-+..++..+++|++.||+||||. +.+|.++++++..+.-.   |-.+.+         
T Consensus        57 ~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~-i~~g~ll~~lg~ll~al---phf~~~~y~~~~~~~  132 (633)
T TIGR00805        57 TTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIV-IGIGCAIMGLGSFLLSL---PHFLSGRYSYSTTVS  132 (633)
T ss_pred             hhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcceE-EEecHHHHHHHHHHHhC---hHHhcCCcccccccc
Confidence            33333449999999999999999999999999999999998775 77888888888765432   310000         


Q ss_pred             ---------------C---------------ccc--hhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCccchhhHHH
Q 014600          119 ---------------T---------------STL--KVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTS  166 (422)
Q Consensus       119 ---------------~---------------~~~--~~~~~~~~~~~~l~~~~~~~~~~p~~al~~~~t~~~~eR~~l~~  166 (422)
                                     +               .+.  ...+..+++.+++.+++.+...+...+++.|..+ +++|++..+
T Consensus       133 ~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~-~~~~~~~~~  211 (633)
T TIGR00805       133 STGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAK-SKNSPLYIG  211 (633)
T ss_pred             ccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCC-ccccHHHHH
Confidence                           0               000  1112334445567888888777778889999876 688999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhccCC----------CCCchH--HHHHHHHHHHHHHHHHHHhhhhccccCcccc---c
Q 014600          167 CRNAFTMVANLSLYAIAFIVFSVSTAK----------THADLE--NQYRWIAYSSIFIGCCFVGIFLSRTEEPRLK---M  231 (422)
Q Consensus       167 ~~~~~~~ig~~l~~~~~~~l~~~~~~~----------g~~~~~--~~~~~~~~i~~~i~~i~~~i~~~~~~E~~~~---~  231 (422)
                      +......+|..++..+++.+.....+.          ...|.+  .+|+..+++.++++++..+..+++.|+.+.+   +
T Consensus       212 i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~~l~~v~l~~~p~~lp~~~~~~  291 (633)
T TIGR00805       212 ILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVALLTSIPFFFFPKALPKEGKRV  291 (633)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhCccccCCccccc
Confidence            999999999999888877766543111          011211  2477778887777776655544444332211   0


Q ss_pred             c----cC------CC----------cchhhhHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhccCccchhH
Q 014600          232 G----LR------GN----------SHARISWAYWFKKILYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAK  288 (422)
Q Consensus       232 ~----~~------~~----------~~~~~~~~~~~~n~~f~~~~~~~~~~~~~~~~~~~y~~~y~~~~~~l~~~~~  288 (422)
                      +    ++      ++          .+..+.++.++|||.++...+..++......+..+|+|+|+++..++++...
T Consensus       292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~n~~f~~~~l~~~~~~~~~~~~~~~lP~yl~~~~g~s~~~a  368 (633)
T TIGR00805       292 NVDVHETEKLEKSEDKSRKKNSDITKDFPKIIKRLLCNPIYMLVILAQVIDSLAFNGYITFLPKYLENQYGISSAEA  368 (633)
T ss_pred             chhhhhhhcccccccccchhhhhhHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHH
Confidence            0    00      00          0112446789999999888888888778888899999999999888877654

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=99.41  E-value=2.1e-10  Score=122.21  Aligned_cols=170  Identities=13%  Similarity=-0.034  Sum_probs=116.4

Q ss_pred             HHHHHHHHHHHhCCChhHHHHHHHHHHHHhhhhhhhhhhhhcccCCchhHHHHHHHHHHHHHHHhhcCccCccccCCccc
Q 014600           43 WFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTL  122 (422)
Q Consensus        43 ~~~~l~~f~t~~gls~~~~g~i~~i~~l~~ai~~p~~G~lsDr~Grrrp~ll~g~i~~~i~~~~lf~~~~p~~~~~~~~~  122 (422)
                      +...+|....+.|+++.+.|++.++..+..++..++.|+++||+|||+.. +++.++.+++..+...       .+  +.
T Consensus       186 is~ilp~i~~~~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR~GRR~~l-ii~lil~~i~~ll~af-------a~--s~  255 (742)
T TIGR01299       186 VGFVLPSAEKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKLGRKQCL-LICLSVNGFFAFFSSF-------VQ--GY  255 (742)
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHH-HHHHHHHHHHHHHHHH-------Hh--hH
Confidence            43444444445599999999999999999999999999999999999885 4565555555443321       11  11


Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhccC---CCCCchH
Q 014600          123 KVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTA---KTHADLE  199 (422)
Q Consensus       123 ~~~~~~~~~~~~l~~~~~~~~~~p~~al~~~~t~~~~eR~~l~~~~~~~~~ig~~l~~~~~~~l~~~~~~---~g~~~~~  199 (422)
                          ..+++..++.+++.+.......+++.|+++ +++|++..++...+..+|.++++.++..++...+.   .+.....
T Consensus       256 ----~~llv~R~l~G~g~g~~~p~~~~~isE~~p-~~~Rg~~~g~~~~~~~iG~ila~~la~~il~~~G~~~~~g~~~~~  330 (742)
T TIGR01299       256 ----GFFLFCRLLSGFGIGGAIPIVFSYFAEFLA-QEKRGEHLSWLCMFWMIGGIYAAAMAWAIIPHYGWSFQMGSAYQF  330 (742)
T ss_pred             ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhcccccccc
Confidence                123334457888888878888999999986 67899999988888888888887766555432211   0000123


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhccccCcc
Q 014600          200 NQYRWIAYSSIFIGCCFVGIFLSRTEEPR  228 (422)
Q Consensus       200 ~~~~~~~~i~~~i~~i~~~i~~~~~~E~~  228 (422)
                      .+||+.+++.++.+++. ++..+++||.|
T Consensus       331 ~gWR~l~~i~~lp~ll~-ll~~~~lPESP  358 (742)
T TIGR01299       331 HSWRVFVIVCAFPCVFA-IGALTFMPESP  358 (742)
T ss_pred             ccHHHHHHHHHHHHHHH-HHHHHHcCCCH
Confidence            47999887766655544 44456667753

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=99.41  E-value=3.5e-10  Score=116.55  Aligned_cols=158  Identities=10%  Similarity=-0.028  Sum_probs=110.7

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHh-CCChhHHHHHHHHHHHHhhhhhhhhhhhhcc-cCCchhHHHHHHHHHHHHHHHhhc
Q 014600           32 GHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDR-FGHFKIWHGAGSVLVAVSFSSVFG  109 (422)
Q Consensus        32 g~~~~~~~~~~~~~~l~~f~t~~-gls~~~~g~i~~i~~l~~ai~~p~~G~lsDr-~Grrrp~ll~g~i~~~i~~~~lf~  109 (422)
                      ..+.....+..+.++++.|+++. |++..+++.+............++.|+++|| +||||. ++.+.+..+++..++..
T Consensus        29 ~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~-~~~g~~~~~ig~~l~~~  107 (500)
T PRK09584         29 IELWERFGYYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRV-IMLGAIVLAIGYALVAW  107 (500)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHH-HHHHHHHHHHHHHHHHH
Confidence            45667777777888999999887 9999999988888777767777899999999 599988 55677777777554431


Q ss_pred             CccCccccCCccchhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCcc-chhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014600          110 GCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNST-SRVVLTSCRNAFTMVANLSLYAIAFIVFS  188 (422)
Q Consensus       110 ~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~al~~~~t~~~~-eR~~l~~~~~~~~~ig~~l~~~~~~~l~~  188 (422)
                             +++ ... .   +.+...+.+++.+.......++.+++.++++ +|++..++.+.+.++|..+++.+.+.+.+
T Consensus       108 -------~~~-~~~-~---l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~~  175 (500)
T PRK09584        108 -------SGH-DAG-I---VYMGMATIAVGNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWLAA  175 (500)
T ss_pred             -------hcc-cHH-H---HHHHHHHHHHhhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHHHHH
Confidence                   111 111 1   1122235667777666777789999886443 34566777778889998888777655543


Q ss_pred             hccCCCCCchHHHHHHHHHHHHHH
Q 014600          189 VSTAKTHADLENQYRWIAYSSIFI  212 (422)
Q Consensus       189 ~~~~~g~~~~~~~~~~~~~i~~~i  212 (422)
                                ..||++.+.+.++.
T Consensus       176 ----------~~g~~~~F~i~~i~  189 (500)
T PRK09584        176 ----------KYGWSVAFALSVVG  189 (500)
T ss_pred             ----------hhCHHHHHHHHHHH
Confidence                      23788887776543

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=99.39  E-value=6.6e-11  Score=114.86  Aligned_cols=221  Identities=13%  Similarity=0.048  Sum_probs=155.4

Q ss_pred             HHHHHHHHh-CCChhHHHHHHHHHHHHhhhhhhhhhhhhcccCCchhHHHHHHHHHHHHHHHhhcCccCccccCCccchh
Q 014600           46 YLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKV  124 (422)
Q Consensus        46 ~l~~f~t~~-gls~~~~g~i~~i~~l~~ai~~p~~G~lsDr~Grrrp~ll~g~i~~~i~~~~lf~~~~p~~~~~~~~~~~  124 (422)
                      -+..++.+. |+|+.+.+++..+..+..++.-.+.|.+.||+|-||... .+.++..+-...+..     . ....+. +
T Consensus        35 ~l~~~i~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drfGgR~~~~-~s~~l~~IP~~~~~~-----a-~~~~~~-~  106 (417)
T COG2223          35 PLGVFIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRFGGRKWTI-LSMLLLLIPCLGLAF-----A-VTYPST-W  106 (417)
T ss_pred             HHHhhhccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcccCchHHHH-HHHHHHHHHHHHHHH-----H-ccCCch-H
Confidence            345566665 999999999999999999999999999999999988755 344444443222211     0 111222 2


Q ss_pred             hhHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchHHHHHH
Q 014600          125 ETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYRW  204 (422)
Q Consensus       125 ~~~~~~~~~~l~~~~~~~~~~p~~al~~~~t~~~~eR~~l~~~~~~~~~ig~~l~~~~~~~l~~~~~~~g~~~~~~~~~~  204 (422)
                      .   +++...+.+++-+-+ ....+..+...+ +++++.+.++.. .+|+|..+...+.++++...+     .  ..|+.
T Consensus       107 ~---ll~~gll~G~~GasF-av~m~~~s~~fP-~~~qG~AlGI~g-~GN~G~av~q~~~P~v~~~~g-----~--~~w~~  173 (417)
T COG2223         107 Q---LLVIGLLLGLAGASF-AVGMPNASFFFP-KEKQGLALGIAG-AGNLGVAVAQLVAPLVAVAFG-----F--LAWRN  173 (417)
T ss_pred             H---HHHHHHHHhccccee-hcccccccccCC-hhhhhHHHHHhc-cccccHHHHHHHHHHHHHHHh-----h--HHHHH
Confidence            2   333333455443322 334556777776 677899999987 889999998888877765432     1  14888


Q ss_pred             HHHHHHHHHHHHHhhhhccccCcccccccCCCcchh-hhHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhccCc
Q 014600          205 IAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHAR-ISWAYWFKKILYYQVALVYMLTRLVVNVSQAYLAFYVINDLRM  283 (422)
Q Consensus       205 ~~~i~~~i~~i~~~i~~~~~~E~~~~~~~~~~~~~~-~~~~~~~~n~~f~~~~~~~~~~~~~~~~~~~y~~~y~~~~~~l  283 (422)
                      ...+..+..++..+..++..+|.++.++  .+++.+ .+++.++|||+.|.+.+.|+.+.-+.-+...++|.|++++.++
T Consensus       174 ~~~i~~~~l~v~~v~~~~~~~d~p~~r~--~~~~~~~~~~~~v~~~~~~W~lsllY~~tFG~Fvgfs~~l~~~~~~~fg~  251 (417)
T COG2223         174 VAGIYVVALAIAAVLAWLGMNDVPEHRA--SVKPQLPAQLKAVFSNKDTWLLSLLYFATFGGFVGFSAYLPMYLVTQFGL  251 (417)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCChhhhc--cccccchhHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            8887777777777777888888654221  122223 6788999999999999999998888888999999999999998


Q ss_pred             cchhHh
Q 014600          284 GQSAKA  289 (422)
Q Consensus       284 ~~~~~~  289 (422)
                      ++...+
T Consensus       252 ~~~~Ag  257 (417)
T COG2223         252 SPVTAG  257 (417)
T ss_pred             ChhhHH
Confidence            876543

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=99.34  E-value=2.7e-09  Score=108.69  Aligned_cols=157  Identities=14%  Similarity=0.008  Sum_probs=112.2

Q ss_pred             chhHHHHHHHHHHHHHHHHHHh-CCChhHHHHHHHHHHHHhhhhhhhhhhhhccc-CCchhHHHHHHHHHHHHHHHhhcC
Q 014600           33 HMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRF-GHFKIWHGAGSVLVAVSFSSVFGG  110 (422)
Q Consensus        33 ~~~~~~~~~~~~~~l~~f~t~~-gls~~~~g~i~~i~~l~~ai~~p~~G~lsDr~-Grrrp~ll~g~i~~~i~~~~lf~~  110 (422)
                      .+.....++.+..+++.|+++. |+++.+++.+.........+..++.|+++||+ ||||. +++|.+..+++..++.. 
T Consensus        18 ~~~e~fs~Yg~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~-iliG~il~~lg~lll~~-   95 (493)
T PRK15462         18 QIWEYFSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMA-VMLGALLMAIGHVVLGA-   95 (493)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHH-HHHHHHHHHHHHHHHHH-
Confidence            4556677777888999999987 99999999999999999999999999999998 99988 55788887777654431 


Q ss_pred             ccCccccCCccchhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCc-cchhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 014600          111 CMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNS-TSRVVLTSCRNAFTMVANLSLYAIAFIVFSV  189 (422)
Q Consensus       111 ~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~al~~~~t~~~-~eR~~l~~~~~~~~~ig~~l~~~~~~~l~~~  189 (422)
                        +    + .....   .+.. ..+..++.+.......++.+|+.+++ ++|.+..++.+...++|+.+++.+.+.+.+ 
T Consensus        96 --~----~-~~~~~---~~l~-l~li~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~-  163 (493)
T PRK15462         96 --S----E-IHPSF---LYLS-LAIIVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQE-  163 (493)
T ss_pred             --h----h-cchhH---HHHH-HHHHHHhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHh-
Confidence              1    1 11111   1111 11233445555556678899998754 478889999988899998888877655532 


Q ss_pred             ccCCCCCchHHHHHHHHHHHHHH
Q 014600          190 STAKTHADLENQYRWIAYSSIFI  212 (422)
Q Consensus       190 ~~~~g~~~~~~~~~~~~~i~~~i  212 (422)
                               ..||++.+.+.++.
T Consensus       164 ---------~~Gw~~~F~iaaig  177 (493)
T PRK15462        164 ---------EYSWAMGFGLAAVG  177 (493)
T ss_pred             ---------hhChHHHHHHHHHH
Confidence                     23677777665443

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=99.34  E-value=3.6e-09  Score=102.36  Aligned_cols=230  Identities=14%  Similarity=0.055  Sum_probs=144.5

Q ss_pred             HHHHHHHHHh-CCChhHHHHHHHHHHHHhhhhhhhhhhhhcccCCchhHHHHHHHHHHHHHHHhhcCccCccccCCccch
Q 014600           45 TYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLK  123 (422)
Q Consensus        45 ~~l~~f~t~~-gls~~~~g~i~~i~~l~~ai~~p~~G~lsDr~Grrrp~ll~g~i~~~i~~~~lf~~~~p~~~~~~~~~~  123 (422)
                      --+.+.+.++ +++..+++.+....-....+.....|++.+|+|+|+- ++.|..+.+++..+ |+   |   ++.....
T Consensus        33 diLip~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~gyk~g-i~lgL~l~avg~~l-F~---p---Aa~~~~y  104 (422)
T COG0738          33 DILIPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAG-IVLGLLLYAVGAAL-FW---P---AASSKSY  104 (422)
T ss_pred             hhhHHHHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhHHH-HHHHHHHHHHHHHH-Hh---h---hhhhhhH
Confidence            3455666666 9999999999999999999999999999999999999 66788999988765 43   3   1122211


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCc-h----
Q 014600          124 VETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHAD-L----  198 (422)
Q Consensus       124 ~~~~~~~~~~~l~~~~~~~~~~p~~al~~~~t~~~~eR~~l~~~~~~~~~ig~~l~~~~~~~l~~~~~~~g~~~-~----  198 (422)
                         -.++....+.+.+-+..++..++++..+.+++ +.+.-....+.+..+|.++++.++.-++..-...+..+ .    
T Consensus       105 ---~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~-~a~~rlnl~q~fn~lGa~~gp~~g~~lils~~~~~~~~~~~~~~  180 (422)
T COG0738         105 ---GFFLVALFILASGIGLLETAANPYVTLLGKPE-SAAFRLNLAQAFNGLGAILGPLLGSSLILSGVALTMSAAQILAI  180 (422)
T ss_pred             ---HHHHHHHHHHHhhhHHHHhccchHHHHhCCch-hHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhhccCHHHHHHH
Confidence               22222223567777889999999999987643 33333445556778888888777766654200000000 0    


Q ss_pred             ----HHHHHHHHHHHHHHHHHHHhhhhccccCcccccccCCCcchh-hhHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHH
Q 014600          199 ----ENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHAR-ISWAYWFKKILYYQVALVYMLTRLVVNVSQAYL  273 (422)
Q Consensus       199 ----~~~~~~~~~i~~~i~~i~~~i~~~~~~E~~~~~~~~~~~~~~-~~~~~~~~n~~f~~~~~~~~~~~~~~~~~~~y~  273 (422)
                          ...+++...+.+.+.+++.+. ....|-+..+++++++.+.+ ....+++|||.++...+..++.--.......++
T Consensus       181 ~~~~~~~v~~pYl~~~~~lvll~v~-~~~~k~p~~~~~~~~~~~~~~~~~~~l~~~~~~~~gvl~~FlYVG~Eva~gsfl  259 (422)
T COG0738         181 KGADASSVQFPYLILAGLLVLLAVL-ILLSKLPDLQVAAPSLGASGSAGLSSLFQNKHLRLGVLAIFLYVGAEVAIGSFL  259 (422)
T ss_pred             HHHHHHhhhhHHHHHHHHHHHHHHH-HHhccCCcCCcccccccccccchHHHHHhChHHHHHHHHHHHHHhHHHHHHHHH
Confidence                112445555444443333322 23333332222222222222 156889999998876666666545556778899


Q ss_pred             HHHhhhccCccchh
Q 014600          274 AFYVINDLRMGQSA  287 (422)
Q Consensus       274 ~~y~~~~~~l~~~~  287 (422)
                      +.|..+..+++...
T Consensus       260 ~~y~~~~~g~~~~~  273 (422)
T COG0738         260 VSYLEELLGLNEQQ  273 (422)
T ss_pred             HHHHHhcCCccHHH
Confidence            99999976765543

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.31  E-value=1.6e-10  Score=117.39  Aligned_cols=214  Identities=13%  Similarity=0.014  Sum_probs=158.4

Q ss_pred             CCChhHHHHHHHHHHHHhhhhhhhhhhhhcccCCchhHHHHHHHHHHHHHHHhhcCccCccccCCccchhhhHHHHHHHH
Q 014600           55 GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVETISYCVFAA  134 (422)
Q Consensus        55 gls~~~~g~i~~i~~l~~ai~~p~~G~lsDr~Grrrp~ll~g~i~~~i~~~~lf~~~~p~~~~~~~~~~~~~~~~~~~~~  134 (422)
                      ++...+.+.+.++..+..++.+++.|++.||+.-.|- +....+...+..++..+       ..      .+..|+..++
T Consensus        77 ~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~-l~~~~~~w~~~~~~~~~-------~~------s~~~~ialr~  142 (495)
T KOG2533|consen   77 KLVGNQLGVLDTVFYVGYIIGQFPSGLLGDRFPLSKG-LSVSGILWGLFGFLTAA-------VH------SFPGLIALRF  142 (495)
T ss_pred             chhhhhhhhHHHHHHHHHHHHHhhHHHHHHhCChHHH-HHHHHHHHHHHHHHHHH-------Hh------hhHHHHHHHH
Confidence            4566789999999999999999999999999984433 33333333322212110       11      1234455566


Q ss_pred             HHHHHHHHHHhhhhhhhhhccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchHHHHHHHHHHHHHHHH
Q 014600          135 IFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGC  214 (422)
Q Consensus       135 l~~~~~~~~~~p~~al~~~~t~~~~eR~~l~~~~~~~~~ig~~l~~~~~~~l~~~~~~~g~~~~~~~~~~~~~i~~~i~~  214 (422)
                      +.++..+...++...++..+.+ ++||+...++......+|+++++.+...+...-+    .....||+|.+++-+++.+
T Consensus       143 llGl~es~~wP~~~~~lg~wy~-~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~----~~~~~gW~~~FiI~G~i~~  217 (495)
T KOG2533|consen  143 LLGLFESGGWPGVVAILGNWYG-KSERGLRMGIWYASASLGNIFGGLIAYGVFKLNG----SGGLAGWRWLFIIEGVITL  217 (495)
T ss_pred             HHHHHhcccchHHHHHHHhhcC-hhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcC----CCCcCCceeehhHHHHHHH
Confidence            7888889888899999999876 7899999999999999999998888766554222    1235699999999999999


Q ss_pred             HHHhhhhccccCcccc-----ccc----------C-----CCcchhhhHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHH
Q 014600          215 CFVGIFLSRTEEPRLK-----MGL----------R-----GNSHARISWAYWFKKILYYQVALVYMLTRLVVNVSQAYLA  274 (422)
Q Consensus       215 i~~~i~~~~~~E~~~~-----~~~----------~-----~~~~~~~~~~~~~~n~~f~~~~~~~~~~~~~~~~~~~y~~  274 (422)
                      +..+++++.+|+.|.+     ++|          +     +++.....+++.+|++..|.+.+++++.....++...|.|
T Consensus       218 ~~gi~~f~~lp~~P~~~~fl~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~a~~dp~vw~~~l~~~~~~lv~~~~~~~lp  297 (495)
T KOG2533|consen  218 VLGIVVFFFLPDNPSKAWFLTDEEKELVVERLRESPSGGIENKFKWKGFKEALKDPGVWPFSLCYFFLKLVNYGFSYWLP  297 (495)
T ss_pred             HHHheEEEEecCChhhccccchHHHHHHHHHHHhccCCCcccccCHHHHHHHHhchhHHHHHHHHHHHhhccccHHHHHH
Confidence            9999999998876541     000          0     0112345678899999999999999999999999999999


Q ss_pred             HHhhhccCccchh
Q 014600          275 FYVINDLRMGQSA  287 (422)
Q Consensus       275 ~y~~~~~~l~~~~  287 (422)
                      .|+.++.+++...
T Consensus       298 l~l~~~~~~s~~~  310 (495)
T KOG2533|consen  298 LYLKSNGGYSELQ  310 (495)
T ss_pred             HHHHcCCCcChHH
Confidence            9999966665544

>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]

Probab=99.28  E-value=1.1e-11  Score=120.90  Aligned_cols=160  Identities=17%  Similarity=0.175  Sum_probs=125.5

Q ss_pred             eeeeeeeccchhHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHhhhhhhhhhhhhc----ccCCchhHHHHHHHH
Q 014600           24 WSVLYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELID----RFGHFKIWHGAGSVL   99 (422)
Q Consensus        24 ~~~~~y~~g~~~~~~~~~~~~~~l~~f~t~~gls~~~~g~i~~i~~l~~ai~~p~~G~lsD----r~Grrrp~ll~g~i~   99 (422)
                      ++.+.-..-.++.++.+..-.+|+++|...+|++-.+.+.+...+++...+.+|+.|..||    |||||||++..+.+.
T Consensus        32 ~~li~v~~ia~Gvqf~wA~elsy~tPyl~~lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~~  111 (498)
T KOG0637|consen   32 RKLISVASIAAGVQFGWALELSYLTPYLQSLGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSLL  111 (498)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccccHHHHHcCCCcccccccccccccccceecccccccccccccccccccchHHHhhHH
Confidence            5667777778899999999999999999999999999999999999999999999999999    599999999999999


Q ss_pred             HHHHHHHhhc-CccCccccCCccc---hhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCccchhhHHHHHHHHHHHH
Q 014600          100 VAVSFSSVFG-GCMPCRILSTSTL---KVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVA  175 (422)
Q Consensus       100 ~~i~~~~lf~-~~~p~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~p~~al~~~~t~~~~eR~~l~~~~~~~~~ig  175 (422)
                      .+++.+++-+ +.+-..+.++...   ....+.+++-.-+..+.....+.|..++..|+..+++|+++.+++...+..+|
T Consensus       112 i~~~l~Lig~aaDig~~lgd~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~Ans~f~~f~avG  191 (498)
T KOG0637|consen  112 IAVSLFLIGYAADIGLLLGDNERKPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAKKTRANSVFSFFMAVG  191 (498)
T ss_pred             HHHHHhhhhhHhhhhHHhcCCcccccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhhccchhHHHHHHhc
Confidence            8888765422 1000001111111   12333333333467888888999999999999987777776999999999999


Q ss_pred             HHHHHHHH
Q 014600          176 NLSLYAIA  183 (422)
Q Consensus       176 ~~l~~~~~  183 (422)
                      +.+++..+
T Consensus       192 nvLGY~~g  199 (498)
T KOG0637|consen  192 NVLGYALG  199 (498)
T ss_pred             ceeeeecc
Confidence            99887665

>TIGR00806 rfc RFC reduced folate carrier

Probab=99.27  E-value=5.1e-09  Score=104.52  Aligned_cols=149  Identities=8%  Similarity=-0.005  Sum_probs=110.9

Q ss_pred             CCceeeeeeeccchhHHHHHHHHHHHHHHHHHHh-CCChhH-HHHHHHHHHHHhhhhhhhhhhhhcccCCchhHHHHHHH
Q 014600           21 VGRWSVLYYGSGHMLNDITAACWFTYLLLFLTDI-GLSPRG-AAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSV   98 (422)
Q Consensus        21 l~~~~~~~y~~g~~~~~~~~~~~~~~l~~f~t~~-gls~~~-~g~i~~i~~l~~ai~~p~~G~lsDr~Grrrp~ll~g~i   98 (422)
                      ++.|.++..-+.-+|.-.-.=..-++...++.+. |++..+ .|.+..+.....++...+.|+++||+|-||. +..+.+
T Consensus        22 ~~~W~~~~~~lC~fGF~~e~R~n~s~a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~v-L~l~~l  100 (511)
T TIGR00806        22 LKSWRVLVLYLCFYGFMAQFRPGESFITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPV-LVLQAL  100 (511)
T ss_pred             hcchhHHHHHHHHHHHHHHhhchHHHHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHH-HHHHHH
Confidence            4556666544443332222222336777788876 999999 9999999999999999999999999999876 556666


Q ss_pred             HHHHHHHHhhcCccCccccCCccchhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCccchhhHHHHHHHHHHHHHHH
Q 014600           99 LVAVSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLS  178 (422)
Q Consensus        99 ~~~i~~~~lf~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~al~~~~t~~~~eR~~l~~~~~~~~~ig~~l  178 (422)
                      ...+...++-+       .  .+    +..+.++.++++++.+... ++...+..+.+ ++||+++.++...+..+|.++
T Consensus       101 ~Wsl~t~L~~f-------a--~S----l~~L~i~R~llGvaEA~~~-A~~syI~~WfP-~kER~ratsi~~sg~~vG~~I  165 (511)
T TIGR00806       101 SFVCVWLLLLL-------G--TS----VWHMQLMEVFYSVTMAARI-AYSSYIFSLVP-PSRYQRAAAYSRAAVLLGVFL  165 (511)
T ss_pred             HHHHHHHHHHH-------H--HH----HHHHHHHHHHHHHHHHHHH-HHHHHHHHHCC-HHHHHHHHHHHHHHHHHHHHH
Confidence            66666544321       1  11    2334455568899888777 89999999987 799999999999999999998


Q ss_pred             HHHHHHH
Q 014600          179 LYAIAFI  185 (422)
Q Consensus       179 ~~~~~~~  185 (422)
                      ++.++..
T Consensus       166 a~~L~ql  172 (511)
T TIGR00806       166 SSVLGQL  172 (511)
T ss_pred             HHHHHHH
Confidence            8877765

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=99.24  E-value=1.2e-11  Score=121.07  Aligned_cols=186  Identities=12%  Similarity=0.051  Sum_probs=135.8

Q ss_pred             CCChhHHHHHHHHHHHHhhhhhhhhhhhhcccCCchhHHHHHHHHHHHHHHHhhcCccCccccCCccchhhhHHHHHHHH
Q 014600           55 GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVETISYCVFAA  134 (422)
Q Consensus        55 gls~~~~g~i~~i~~l~~ai~~p~~G~lsDr~Grrrp~ll~g~i~~~i~~~~lf~~~~p~~~~~~~~~~~~~~~~~~~~~  134 (422)
                      +++....|++..+..+...+..|+.|++.||+.|++. +..|..++.++.++.-       +   .+..   ..+++.+.
T Consensus        64 ni~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v-~~vG~~iW~~Av~~~~-------f---s~~F---wq~~l~R~  129 (493)
T KOG1330|consen   64 NISDSELGLLQTVFIVVFMIASPLFGYLADRYNRKRV-IAVGIFIWTLAVFASG-------F---SNHF---WQVLLCRG  129 (493)
T ss_pred             CCCchhccchhHHHHHHHHHHHHHHHHHHhhcCcceE-EeeHHHHHHHHHHHHH-------H---HHHH---HHHHHHHH
Confidence            8999999999999999999999999999999999988 6678888887765421       1   1222   22334445


Q ss_pred             HHHHHHHHHHhhhhhhhhhccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchHHHHHHHHHHHHHHHH
Q 014600          135 IFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGC  214 (422)
Q Consensus       135 l~~~~~~~~~~p~~al~~~~t~~~~eR~~l~~~~~~~~~ig~~l~~~~~~~l~~~~~~~g~~~~~~~~~~~~~i~~~i~~  214 (422)
                      +.+++-+.+.....++++|+++ +++|++..++-+....+|..++..++.-+ ...        ...|||.+...+++++
T Consensus       130 ~vGiGeAs~~~ia~s~IaD~f~-~~~Rs~~~~ify~~ipvGsglG~vvgs~v-a~~--------~~~Wr~af~~~avl~v  199 (493)
T KOG1330|consen  130 FVGIGEASYSPIAPSLIADSFP-DDKRSRVLGIFYFAIPVGSGLGYVVGSVV-ASL--------TFWWRWAFRGSAVLGV  199 (493)
T ss_pred             HhccchhhhcccchhHhhhcCc-chhhhHHHHHhhhhcccccceeEEeeeee-ccC--------ccceEEEEEeehHHHH
Confidence            7889999999889999999987 57899999999999998887776554322 211        1128888888889999


Q ss_pred             HHHhhhhccccCcccc-ccc--CC------CcchhhhHHHHHHhHHHHHHHHHHHHHHH
Q 014600          215 CFVGIFLSRTEEPRLK-MGL--RG------NSHARISWAYWFKKILYYQVALVYMLTRL  264 (422)
Q Consensus       215 i~~~i~~~~~~E~~~~-~~~--~~------~~~~~~~~~~~~~n~~f~~~~~~~~~~~~  264 (422)
                      ++.++.+++++|++.. .++  .+      ..+..++++.+.|||.+....+.+...+.
T Consensus       200 i~~~L~~~f~~eP~rga~~~~~~~~~~~~~~ts~~kDl~~l~~~~v~v~~sl~~~a~~f  258 (493)
T KOG1330|consen  200 IVGLLVFLFVREPERGARDEVDGENKMVKPFTSVWKDLKVLAKIKVFVLSSLGIIAAQF  258 (493)
T ss_pred             HHHHHHHhhccCcccccccccccCCcCCCCccchHHHHHHHHccCceeeehHHHHHHHH
Confidence            9999999999997642 111  11      12344666777888876544444444333

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=99.17  E-value=4.7e-09  Score=107.69  Aligned_cols=277  Identities=15%  Similarity=0.105  Sum_probs=182.2

Q ss_pred             hCCChhHHHHHHHHHHHHhhhhhhhhhhhhcccCCchhHHHHHHHHHHHHHHHhhcCccCccccCCccchhhhHHHHHHH
Q 014600           54 IGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVETISYCVFA  133 (422)
Q Consensus        54 ~gls~~~~g~i~~i~~l~~ai~~p~~G~lsDr~Grrrp~ll~g~i~~~i~~~~lf~~~~p~~~~~~~~~~~~~~~~~~~~  133 (422)
                      .+.+..+++++.++..-...+..|+.+.++||+|.|.. .+.|+++.++++++..+       +.  +.+.   .|+...
T Consensus        76 f~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~rfg~R~v-~i~G~~v~~~g~~lssF-------~~--~i~~---l~lt~g  142 (509)
T KOG2504|consen   76 FGSSSSQIAWIGSLLLGVYLLAGPLVSALCNRFGCRTV-MIAGGLVAALGLLLSSF-------AT--SLWQ---LYLTFG  142 (509)
T ss_pred             hCCCccHHHHHHHHHHHHHHHhccHHHHHHhhcCchHH-HHHHHHHHHHHHHHHHH-------Hh--hHHH---HHHHHH
Confidence            38888889999999999999999999999999999877 67899999998876432       21  2222   233334


Q ss_pred             HHHHHHHHHHHhhhhhhhhhccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchHHHHHHHHHHHHHHH
Q 014600          134 AIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIG  213 (422)
Q Consensus       134 ~l~~~~~~~~~~p~~al~~~~t~~~~eR~~l~~~~~~~~~ig~~l~~~~~~~l~~~~~~~g~~~~~~~~~~~~~i~~~i~  213 (422)
                      ++.+++.++...|....+..++  +++|+.++++...+..+|.++.+.+.-.+++          ..|||+...+.+.+.
T Consensus       143 vi~G~G~~~~~~paiviv~~YF--~kkR~lA~Gia~~GsG~G~~~~~~l~~~l~~----------~~G~r~~~l~~~~~~  210 (509)
T KOG2504|consen  143 VIGGLGLGLIYLPAVVILGTYF--EKKRALATGIAVSGTGVGTVVFPPLLKYLLS----------KYGWRGALLIFGGIS  210 (509)
T ss_pred             HHhhccchhhhcchhhhhhhHh--HHHHHHHHhhhhccCCcceeeHHHHHHHHHH----------HhCcHHHHHHHHHHH
Confidence            5789999999999999999887  5789999999998888888776544333332          357888877777666


Q ss_pred             HHHHhhhhccccC---------------------------ccc-cccc--C-------------CC--c--chhhhH---
Q 014600          214 CCFVGIFLSRTEE---------------------------PRL-KMGL--R-------------GN--S--HARISW---  243 (422)
Q Consensus       214 ~i~~~i~~~~~~E---------------------------~~~-~~~~--~-------------~~--~--~~~~~~---  243 (422)
                      +-+.......-|.                           +.. ++++  .             ++  .  ..+...   
T Consensus       211 l~~~~~~~~~rp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (509)
T KOG2504|consen  211 LNVLVAGALLRPLSPPKKPNEEKDLRNSAASVESTPKPVELRISERDSGLKKLSLSNLATLKRGPDKWRNSPLQAFLSML  290 (509)
T ss_pred             HHHHHHHHHcCCCCcCCCchhhhhhccccccccccccccccccccCCCCCCcccccchhhhhhCCccccccchhhhhhhh
Confidence            5444433333220                           000 0000  0             00  0  111122   


Q ss_pred             -HHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhccCccchhHh--------------HHHH-----------HHHH
Q 014600          244 -AYWFKKILYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKA--------------LVPA-----------IIYI  297 (422)
Q Consensus       244 -~~~~~n~~f~~~~~~~~~~~~~~~~~~~y~~~y~~~~~~l~~~~~~--------------~iP~-----------~~~~  297 (422)
                       .+++|+|.|+.+.+...+...+......|++.|.. +.+.+....+              .++.           .++.
T Consensus       291 d~~ll~~~~fl~~~~~~~~~~~g~~~p~~~l~~~~~-~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~  369 (509)
T KOG2504|consen  291 DLSLLKDPKFLLLALSNLFAYLGFNVPFVYLPSYAK-SLGLSSNDAAFLLSIIGVSDIIGRIILGLLADKPGIRALVLFL  369 (509)
T ss_pred             hHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHh-hcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCccccchHHHHH
Confidence             47889999988888888888888888999999988 4455543321              0000           0111


Q ss_pred             HHHHHHHHH----H-------------HHH----------hhhhhhhhcCccccccceehhhHHHHHHHHHHHHHHHHHh
Q 014600          298 CSFIVSILL----Q-------------VTG----------ISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSY  350 (422)
Q Consensus       298 ~~~~~~~~~----~-------------v~~----------~~~~~~~~g~r~~g~~~~~s~~~~~~K~~~a~~~~i~g~~  350 (422)
                      ++.+...+.    .             ..|          .....+..|..+-..  -+|...+.+-++.-+|.-+.|++
T Consensus       370 ~~ll~~gl~~~~~p~~~~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~--a~Gl~l~~~gi~~l~gpPiag~~  447 (509)
T KOG2504|consen  370 LTLLIAGLARLFLPFATTYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEKLSN--AYGLLLLFQGIGALVGPPIAGLL  447 (509)
T ss_pred             HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcch--HHHHHHHHhHHHHHcCcccceee
Confidence            111111111    0             001          112456667666665  78899999999999999999988


Q ss_pred             HhhCC-Ccc
Q 014600          351 QSMSP-TVL  358 (422)
Q Consensus       351 l~~~G-y~~  358 (422)
                      .+..| |+.
T Consensus       448 ~d~tg~Y~~  456 (509)
T KOG2504|consen  448 YDITGNYDH  456 (509)
T ss_pred             eeccCCeee
Confidence            88888 764

>TIGR00889 2A0110 nucleoside transporter

Probab=99.16  E-value=2e-09  Score=108.52  Aligned_cols=188  Identities=12%  Similarity=-0.022  Sum_probs=128.3

Q ss_pred             eeeeccchhHHHHHHHHHHHHHHHHHHhCCC--------hhHHHHHHHHHHHHhhhhhhhhhhhhcccCCchhHHHHHHH
Q 014600           27 LYYGSGHMLNDITAACWFTYLLLFLTDIGLS--------PRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSV   98 (422)
Q Consensus        27 ~~y~~g~~~~~~~~~~~~~~l~~f~t~~gls--------~~~~g~i~~i~~l~~ai~~p~~G~lsDr~Grrrp~ll~g~i   98 (422)
                      +.+....+...........|++.|..+.|.+        ....|.++++..+...+..++.|+++||+||||. ++.+.+
T Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~-l~~~~~  289 (418)
T TIGR00889       211 AIFFFFSMLLGAPLQITNIFGNGFLHEFGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKV-MLLSLV  289 (418)
T ss_pred             eeHHHHHHHHHhHHHHHHHhHHHHHHHhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHH-HHHHHH
Confidence            3444444444444445557778888776544        4678999999999999999999999999999887 556777


Q ss_pred             HHHHHHHHhhcCccCccccCCccchhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCccchhhHHHHHH-HHHHHHHH
Q 014600           99 LVAVSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRN-AFTMVANL  177 (422)
Q Consensus        99 ~~~i~~~~lf~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~al~~~~t~~~~eR~~l~~~~~-~~~~ig~~  177 (422)
                      ..++.+.++..   +   .++  .. ......+..++.+++++....+...++.|..+ +++|++..++.+ ....+|..
T Consensus       290 ~~~v~~~l~~~---~---~~~--~~-~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p-~~~~g~~~g~~~~~~~~lg~~  359 (418)
T TIGR00889       290 AWALRFGFFAY---G---DPE--YF-GYALLFLSMIVYGCAFDFFNISGSVFVEKEVP-VHIRASAQGLFTLMCNGFGSL  359 (418)
T ss_pred             HHHHHHHHHHH---c---Ccc--hh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHhhHHH
Confidence            76666543331   0   011  10 11112222346777777777777788888876 689999999986 55678888


Q ss_pred             HHHHHHHHHHhhccCCCCCchHHHHHHHHHHHHHHHHHHHhhhhccccCccc
Q 014600          178 SLYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRL  229 (422)
Q Consensus       178 l~~~~~~~l~~~~~~~g~~~~~~~~~~~~~i~~~i~~i~~~i~~~~~~E~~~  229 (422)
                      +++.+.+.+.+..+.    +...+|++.+.+.+++.+++.+++++..||+..
T Consensus       360 iGp~l~G~l~~~~g~----~~~~~~~~~f~~~~~~~~i~~~l~~~~~~~~~~  407 (418)
T TIGR00889       360 LGYILSGVMVEKMFA----YGTFDWQTMWLFFAGYIAILAVLFMIFFKYSHN  407 (418)
T ss_pred             HHHHHHHHHHHHhcc----ccCCchHHHHHHHHHHHHHHHHHHHHHhCCccc
Confidence            888888777765421    111368888877777777777888888888643

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.08  E-value=1.2e-07  Score=95.75  Aligned_cols=207  Identities=10%  Similarity=-0.019  Sum_probs=133.1

Q ss_pred             HHHHHHHHHHHHhhhhhhhhhhhhcccCCchhHHHHHHHHHHHHHHHhhcCccCccccCCccchhhhHHHHHHHHHHHHH
Q 014600           60 GAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVG  139 (422)
Q Consensus        60 ~~g~i~~i~~l~~ai~~p~~G~lsDr~Grrrp~ll~g~i~~~i~~~~lf~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~  139 (422)
                      ..+.+.++..+..+++..+.|.++||+|||.. ++...+...++..++.. +   ...   +   .+-.+++-+++.++.
T Consensus        61 lwS~~vs~f~iG~~~Gs~~~~~la~~~GRK~~-l~~~~~l~~~~~~~~~~-s---~~~---~---~~e~li~GR~i~Gl~  129 (485)
T KOG0569|consen   61 LWSLIVSIFFIGGMIGSFSSGLLADRFGRKNA-LLLSNLLAVLAALLMGL-S---KSA---P---SFEMLILGRLIVGLA  129 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhcchHH-HHHHHHHHHHHHHHHHH-H---HHh---h---hHHHHHHHHHHHHHH
Confidence            35666778888899999999999999999966 44555554444333221 0   001   1   122344445677777


Q ss_pred             HHHHHhhhhhhhhhccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchHHHHHHHHHHHHHHHHHHHhh
Q 014600          140 WAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGI  219 (422)
Q Consensus       140 ~~~~~~p~~al~~~~t~~~~eR~~l~~~~~~~~~ig~~l~~~~~~~l~~~~~~~g~~~~~~~~~~~~~i~~~i~~i~~~i  219 (422)
                      .+.......-++.|..| .+-|+.++.....+..+|.+++..++.|-+  +|      ....|.+......+++++.. +
T Consensus       130 ~gl~~~~~pmyl~E~sP-~~~RG~~g~~~~~~~~~g~ll~~~~~l~~i--lG------t~~~W~~l~~~~~i~~~~~l-~  199 (485)
T KOG0569|consen  130 CGLSTGLVPMYLTEISP-KNLRGALGTLLQIGVVIGILLGQVLGLPSL--LG------TEDLWPYLLAFPLIPALLQL-A  199 (485)
T ss_pred             hHHHHHHHHHHHhhcCh-hhhccHHHHHHHHHHHHHHHHHHHHccHHh--cC------CCcchHHHHHHHHHHHHHHH-H
Confidence            77777777778999987 578999999999999999999877776633  22      23578887776666666543 4


Q ss_pred             hhccccCccc-----ccc--------------c--C------------CCc--chhhhHHHHHHhHHHHHHH----HHHH
Q 014600          220 FLSRTEEPRL-----KMG--------------L--R------------GNS--HARISWAYWFKKILYYQVA----LVYM  260 (422)
Q Consensus       220 ~~~~~~E~~~-----~~~--------------~--~------------~~~--~~~~~~~~~~~n~~f~~~~----~~~~  260 (422)
                      ...++||.|.     +.+              +  +            ++.  +.+.++++++|||..++-.    .+.+
T Consensus       200 ~l~~~PESPk~Ll~~k~~~~~A~~sl~~y~G~~~~~~~~e~~~~e~~~~~~~~~~~~sl~~~~~~~~lR~~~~i~~~v~~  279 (485)
T KOG0569|consen  200 LLPFLPESPKYLLIKKGDEEEARKALKFYRGKEDVEAEIEEMLREIEEEELEKKKQISLRQLLKNPTLRRPLLIGIVVSF  279 (485)
T ss_pred             HHhcCCCCcchHHHHcCCHHHHHHHHHHHhCCCcchhHHHHHHHHHHHhccccccCCcHHHHhcCcchhHHHHHHHHHHH
Confidence            4556777542     000              0  0            000  1233578999998776532    2333


Q ss_pred             HHHHHHHhhhHHHHHHhhhccCccchh
Q 014600          261 LTRLVVNVSQAYLAFYVINDLRMGQSA  287 (422)
Q Consensus       261 ~~~~~~~~~~~y~~~y~~~~~~l~~~~  287 (422)
                      ..++.......+|.+.+..+.|++...
T Consensus       280 ~qq~sGi~ai~~Yst~i~~~aG~~~~~  306 (485)
T KOG0569|consen  280 AQQFSGINAIFFYSTSIFKTAGFTPEE  306 (485)
T ss_pred             HHHhcCcceeHHHHHHHHHHcCCCHHH
Confidence            344444455778888888888877653

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=99.00  E-value=1.6e-08  Score=100.91  Aligned_cols=170  Identities=12%  Similarity=0.052  Sum_probs=109.4

Q ss_pred             HHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHhhhhhhhhhhhhcccCCchhHHHHHHHHHHHHHHHhhcCccCcc
Q 014600           36 NDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCR  115 (422)
Q Consensus        36 ~~~~~~~~~~~l~~f~t~~gls~~~~g~i~~i~~l~~ai~~p~~G~lsDr~Grrrp~ll~g~i~~~i~~~~lf~~~~p~~  115 (422)
                      ....+.....+++.|+.+.|.++.++|...++..+...+..++.|+++||+||||.. ..+....+++..++..  .|  
T Consensus       217 ~~~~~~~~~~~lp~~l~~~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~-~~~~~l~~~~~~~~~~--~~--  291 (393)
T PRK09705        217 INGGYASLIAWLPAFYIEIGASAQYSGSLLALMTLGQAAGALLMPAMARHQDRRKLL-MLALVLQLVGFCGFIW--LP--  291 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHcCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhccchHHH-HHHHHHHHHHHHHHHH--cc--
Confidence            344445566788999887799999999999999999999999999999999998874 4555555555443321  12  


Q ss_pred             ccCCccchhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCC
Q 014600          116 ILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTH  195 (422)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~al~~~~t~~~~eR~~l~~~~~~~~~ig~~l~~~~~~~l~~~~~~~g~  195 (422)
                         . +.. . .. .   .+.+++.+.......+...+..+++++|++..+..+....++..+++.+.+.+.+..+    
T Consensus       292 ---~-~~~-~-~~-~---~l~g~g~g~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g----  357 (393)
T PRK09705        292 ---L-QLP-V-LW-A---MVCGLGLGGAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSISG----  357 (393)
T ss_pred             ---c-hHH-H-HH-H---HHHHHhccchHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC----
Confidence               1 111 1 11 1   1234444444334444555655556788999998888888888888877777766432    


Q ss_pred             CchHHHHHHHHHHHHHHHHHHHhhhhccccCccc
Q 014600          196 ADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRL  229 (422)
Q Consensus       196 ~~~~~~~~~~~~i~~~i~~i~~~i~~~~~~E~~~  229 (422)
                           +|...+.+..+.+.+...+.....+|++.
T Consensus       358 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  386 (393)
T PRK09705        358 -----NYLMDWAFHALCVVGLMIITLRFAPARFP  386 (393)
T ss_pred             -----CchHHHHHHHHHHHHHHHHHHHhcccccc
Confidence                 24444444444444444444556667553

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=98.99  E-value=6e-08  Score=100.28  Aligned_cols=153  Identities=17%  Similarity=0.133  Sum_probs=90.2

Q ss_pred             HHHHHHHHHhCCChhHHHHHHHHHHHHhhhhhhhhhhhhcccCCchhHHHHHHHHHHHHHHHhhcCccCccccCCccchh
Q 014600           45 TYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKV  124 (422)
Q Consensus        45 ~~l~~f~t~~gls~~~~g~i~~i~~l~~ai~~p~~G~lsDr~Grrrp~ll~g~i~~~i~~~~lf~~~~p~~~~~~~~~~~  124 (422)
                      +-++.-++|+|-+ ....++.....+..++..|+.|++||.||||.. ++.+.++..++.+..-.       +++.    
T Consensus        65 ~~l~~I~~diG~~-~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~-~i~g~~l~vvG~Iv~at-------A~~~----  131 (599)
T PF06609_consen   65 SILPYINADIGGS-DNWSWFSTAWTLASAVSFPFVGRLSDLFGRRYF-FIIGSLLGVVGSIVCAT-------AQNM----  131 (599)
T ss_pred             HHHHHHHHhcCCC-ccchHHHHHHHHHHHHHHHhhHHHHHHhcchHH-HHHHHHHHHhHHHHhhc-------CCcH----
Confidence            3445556667443 334455666777889999999999999999876 56788888888765432       1221    


Q ss_pred             hhHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHh-hccCCCCCchHHHHH
Q 014600          125 ETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFS-VSTAKTHADLENQYR  203 (422)
Q Consensus       125 ~~~~~~~~~~l~~~~~~~~~~p~~al~~~~t~~~~eR~~l~~~~~~~~~ig~~l~~~~~~~l~~-~~~~~g~~~~~~~~~  203 (422)
                        -.|+.-..+++++.+..... ...++|+.++ +.|.....+..    +..+.... .++.+. .+.      ...+||
T Consensus       132 --~~~iag~~l~GvgaG~~~~~-~~~isEl~p~-k~R~~~~~~~~----~~~i~~~~-~~~~ia~~~~------~~~~WR  196 (599)
T PF06609_consen  132 --NTFIAGMVLYGVGAGVQELA-ALAISELVPN-KWRGLGLAIAS----IPFIITTW-ISPLIAQLFA------AHSGWR  196 (599)
T ss_pred             --HHHHHHHHHHHHhhHHHHHH-HHHHHHhccc-chhhhHhHHHH----HHHHhhhc-ccHHHHHHhc------cCCCcc
Confidence              12333345678877666554 3447898864 55654333222    22222111 223333 221      134899


Q ss_pred             HHHHHHHHHHHHHHhhhhcccc
Q 014600          204 WIAYSSIFIGCCFVGIFLSRTE  225 (422)
Q Consensus       204 ~~~~i~~~i~~i~~~i~~~~~~  225 (422)
                      |.+++.+++..+..++++++.+
T Consensus       197 w~~~~~~i~~~i~~vl~~~fY~  218 (599)
T PF06609_consen  197 WIFYIFIIWSGIALVLIFFFYF  218 (599)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhC
Confidence            9988887776666555544443

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=98.98  E-value=5.5e-08  Score=93.32  Aligned_cols=161  Identities=11%  Similarity=-0.031  Sum_probs=101.5

Q ss_pred             CCCCCCCCCCCceeeeeeeccchhHHHHHHHHHH---HHHHHHHH---h-----CCChhHHHHHHHHHHHHhhhhhhhhh
Q 014600           12 ENDDSFTQPVGRWSVLYYGSGHMLNDITAACWFT---YLLLFLTD---I-----GLSPRGAAAVMLSGQIADGFATIFIG   80 (422)
Q Consensus        12 ~~~~~~~~~l~~~~~~~y~~g~~~~~~~~~~~~~---~l~~f~t~---~-----gls~~~~g~i~~i~~l~~ai~~p~~G   80 (422)
                      ++++.+++..+.++.-.-.+..+..-+.......   |...-..|   .     +.+....|.+=+...+...+++|.+|
T Consensus        10 ~~kk~q~~g~P~~~~~~v~vv~~~~ll~l~~~~~L~~~~~~~V~~F~~a~~~~~~~~~~yaGflGSsF~ilQ~~sS~~~G   89 (451)
T KOG2615|consen   10 LRKKEQKRGFPALALDVVAVVSLSLLLPLLLVSSLYPFVVFMVRDFNIAIGEPDGASVFYAGFLGSSFSILQFISSPLWG   89 (451)
T ss_pred             cchHHHhcCCchhhcceeeeeehhhhhhHhhccchhHHHHHhhHHHHHhhCCcccccchhhhhHhhHHHHHHHHhhhhhh
Confidence            4444466667777655555554444333322222   11111111   1     33567788888999999999999999


Q ss_pred             hhhcccCCchhHHHHHHHHHHHHHHHhhcCccCccccCCccchhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCccc
Q 014600           81 ELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTS  160 (422)
Q Consensus        81 ~lsDr~Grrrp~ll~g~i~~~i~~~~lf~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~al~~~~t~~~~e  160 (422)
                      .+|||+||| |.++.|.+..+++. ++|.      .+    .  .+..+++.+++.++.-+- .-+..|+++|..+ +|+
T Consensus        90 ~~SD~yGRk-pvll~c~~~va~s~-ll~~------~S----~--~F~afv~aR~l~Gi~kgn-l~v~rAiisdV~s-ek~  153 (451)
T KOG2615|consen   90 CLSDRYGRK-PVLLACLIGVALSY-LLWA------LS----R--NFAAFVLARFLGGIFKGN-LSVIRAIISDVVS-EKY  153 (451)
T ss_pred             hhhhhhCch-HHHHHHHHHHHHHH-HHHH------HH----H--HHHHHHHHHHhhhhccCc-hHHHHHHHHhhcC-hhh
Confidence            999999996 55888888888754 3342      11    1  122333223455554443 3456899999987 589


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014600          161 RVVLTSCRNAFTMVANLSLYAIAFIVFS  188 (422)
Q Consensus       161 R~~l~~~~~~~~~ig~~l~~~~~~~l~~  188 (422)
                      |.+..+.-.....+|-++++.+++-+..
T Consensus       154 r~l~ms~v~~a~~lGfilGPmIGgyla~  181 (451)
T KOG2615|consen  154 RPLGMSLVGTAFGLGFILGPMIGGYLAQ  181 (451)
T ss_pred             ccceeeeeehhhhcchhhcchhhhHHHh
Confidence            9998888777788888888877755544

>PTZ00207 hypothetical protein; Provisional

Probab=98.98  E-value=9.6e-08  Score=99.18  Aligned_cols=162  Identities=11%  Similarity=0.112  Sum_probs=106.6

Q ss_pred             HHHHHHHHHhCCChhHHHHHHHHHHHHhhhhhhhhhhhhcccCCchhHHHHHHHHHHHHHHHhhcCccCccccCCccchh
Q 014600           45 TYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKV  124 (422)
Q Consensus        45 ~~l~~f~t~~gls~~~~g~i~~i~~l~~ai~~p~~G~lsDr~Grrrp~ll~g~i~~~i~~~~lf~~~~p~~~~~~~~~~~  124 (422)
                      .+.+..-.+.|++..+++++..++... .+..++.|+++||+|+|+. ++++.+..+++..+++. ++. +.. ..+.+ 
T Consensus        48 v~s~~L~~~lgls~~~l~~i~svg~~~-g~~~lp~G~L~Dr~G~R~v-llig~ll~~iG~ll~al-a~~-~~i-~~s~~-  121 (591)
T PTZ00207         48 LISGAMQARYNLTQRDLSTITTVGIAV-GYFLLPYSFIYDYLGPRPI-FVLSMTVFCLGTLLFAL-TFQ-EVI-EGSVV-  121 (591)
T ss_pred             HHHHHHHHHhCcCHHHHHHHHHHHHHH-HHHHHHHHHHHHHhCcHHH-HHHHHHHHHHHHHHHHH-Hhc-ccc-cCcHH-
Confidence            334443333499999999999886555 4567778999999999887 55788888888766553 111 000 01111 


Q ss_pred             hhHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchHHHHHH
Q 014600          125 ETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYRW  204 (422)
Q Consensus       125 ~~~~~~~~~~l~~~~~~~~~~p~~al~~~~t~~~~eR~~l~~~~~~~~~ig~~l~~~~~~~l~~~~~~~g~~~~~~~~~~  204 (422)
                      .   +.+..++.+.+.+..+++......++.  +++|+++.++...+.++|+.+.+.+...++.           .+|++
T Consensus       122 ~---l~l~r~l~G~G~~~~~~~~~~~i~~~F--p~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~-----------~~~~~  185 (591)
T PTZ00207        122 R---LSVYNGLMTLGCMLFDLGAVVTVLSVF--PSNRGAVVAIMKTFTGLGSAILGSIQLAFFS-----------DNTSA  185 (591)
T ss_pred             H---HHHHHHHHHHHHHHHHHHHHHHHHHhC--hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HhHHH
Confidence            1   222234566776766666677777776  4789999999999988888654433222221           24566


Q ss_pred             HHHHHHHHHHHHHhhhhccccCcc
Q 014600          205 IAYSSIFIGCCFVGIFLSRTEEPR  228 (422)
Q Consensus       205 ~~~i~~~i~~i~~~i~~~~~~E~~  228 (422)
                      .+++.++++++..++++..+++++
T Consensus       186 ~fl~l~vl~~vv~ll~~~~vr~p~  209 (591)
T PTZ00207        186 YFFFLMSFALVVGILAIVFMRLPP  209 (591)
T ss_pred             HHHHHHHHHHHHHHHHHhheeCCc
Confidence            677777777777777777777764

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=98.97  E-value=4.7e-08  Score=100.53  Aligned_cols=171  Identities=15%  Similarity=0.095  Sum_probs=97.2

Q ss_pred             HHHHHHHHHHHHHHHHHHh-CCChhHHHHHHHHHHHHhhhhhhhhhhhhcccCCchhHHHHHHHHHHHHHHHhhcCccCc
Q 014600           36 NDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPC  114 (422)
Q Consensus        36 ~~~~~~~~~~~l~~f~t~~-gls~~~~g~i~~i~~l~~ai~~p~~G~lsDr~Grrrp~ll~g~i~~~i~~~~lf~~~~p~  114 (422)
                      ....+.....|+|.|+++. |.+....+.+.....+...+..|+.|+++||+|||+.. ..+.+...+....++.  .  
T Consensus       262 ~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~-~~~~~~~~~~~~~~~~--~--  336 (490)
T PRK10642        262 TNVTYYMLLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFV-ILGSVALFVLAIPAFI--L--  336 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHH-HHHHHHHHHHHHHHHH--H--
Confidence            3445555667899999887 99998888888888888889999999999999999874 4454433322222121  0  


Q ss_pred             cccCCccchhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCCC
Q 014600          115 RILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKT  194 (422)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~al~~~~t~~~~eR~~l~~~~~~~~~ig~~l~~~~~~~l~~~~~~~g  194 (422)
                        ....+....    .+..++.+++++.......++.+++.+ ++.|++..++.+....+++.+++.+.+.+.+..    
T Consensus       337 --~~~~~~~~~----~~~~~~~g~~~~~~~g~~~~~~~~~~p-~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~~----  405 (490)
T PRK10642        337 --INSNVIGLI----FAGLLMLAVILNCFTGVMASTLPAMFP-THIRYSALAAAFNISVLVAGLTPTLAAWLVEST----  405 (490)
T ss_pred             --HhCCCHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh----
Confidence              001111111    111223445455455556677788876 678998777643334444445444443333211    


Q ss_pred             CCchHHHHHHHHHHHHHHHHHHHhhhhccccCcc
Q 014600          195 HADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPR  228 (422)
Q Consensus       195 ~~~~~~~~~~~~~i~~~i~~i~~~i~~~~~~E~~  228 (422)
                           .+|+..+....+.++++.+. .++.||++
T Consensus       406 -----~~~~~~~~~~~~~~~i~~~~-~~~~pes~  433 (490)
T PRK10642        406 -----QNLMMPAYYLMVVAVIGLIT-GVTMKETA  433 (490)
T ss_pred             -----CCchHHHHHHHHHHHHHHHH-HHHhcccc
Confidence                 12343333333444443333 33457865

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=98.94  E-value=1.4e-08  Score=103.74  Aligned_cols=169  Identities=8%  Similarity=-0.030  Sum_probs=97.5

Q ss_pred             HHHHHHHHHHHHHHHHh-CCChhHHHHHHHHHHHHhhhhhhhhhhhhcccCCchhHHHHHHHHHHHHHH-HhhcCccCcc
Q 014600           38 ITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFS-SVFGGCMPCR  115 (422)
Q Consensus        38 ~~~~~~~~~l~~f~t~~-gls~~~~g~i~~i~~l~~ai~~p~~G~lsDr~Grrrp~ll~g~i~~~i~~~-~lf~~~~p~~  115 (422)
                      ..+.....++|.|+++. |+++.+++...++..+...+..++.|+++||+||||.... +.....++.. +++    +  
T Consensus       272 ~~~~~~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~~-~~~~~~~~~~~~~~----~--  344 (467)
T PRK09556        272 IVRIGIDNWSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLANGRRALVA-CIALALIIFTLGVY----Q--  344 (467)
T ss_pred             HHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHH-HHHHHHHHHHHHHH----H--
Confidence            33334567889999887 9999999999999999999999999999999999887443 3222222221 111    1  


Q ss_pred             ccCCccchhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCccchhhHHHHHHHHHHH-HHHHHHHHHHHHHhh-ccCC
Q 014600          116 ILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMV-ANLSLYAIAFIVFSV-STAK  193 (422)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~al~~~~t~~~~eR~~l~~~~~~~~~i-g~~l~~~~~~~l~~~-~~~~  193 (422)
                        ...+....   ++ ...+.+.+......+..+...|..+ +++|+++.++.+...++ |..+++.+.+.+.+. ..+.
T Consensus       345 --~~~~~~~~---~~-~~~~~G~~~~~~~~~~~~~~~~~~p-~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~  417 (467)
T PRK09556        345 --HATSEYMY---LA-SLFALGFLVFGPQLLIGVAAVGFVP-KKAIGVANGIKGTFAYLFGDSFAKVGLGMIADPTKNGT  417 (467)
T ss_pred             --hcCcHHHH---HH-HHHHHHHHHhhHHHHHHHHHHhhcc-hhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhccccccc
Confidence              01111111   11 1112332221112222345557765 67899999998877775 556666555555541 0000


Q ss_pred             C-CCchHHHHHHHHHHHHHHHHHHHhhh
Q 014600          194 T-HADLENQYRWIAYSSIFIGCCFVGIF  220 (422)
Q Consensus       194 g-~~~~~~~~~~~~~i~~~i~~i~~~i~  220 (422)
                      . .+....+|+..+.+..+..+++.++.
T Consensus       418 ~~~~~~~~~~~~~f~~~~~~~~~~~~~~  445 (467)
T PRK09556        418 PIFGYTLTGWAGTFAALDIAAIGCICLM  445 (467)
T ss_pred             ccccccccChHHHHHHHHHHHHHHHHHH
Confidence            0 00012467777776655555544333

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=98.93  E-value=8.1e-08  Score=96.39  Aligned_cols=170  Identities=11%  Similarity=0.049  Sum_probs=112.0

Q ss_pred             HHHHHh--CCChhHHHHHHHHHHHHhhhhhhhhhhhhcccCC-chhHHHHHHHHHHHHHHHhhcCccCccccCCccchhh
Q 014600           49 LFLTDI--GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGH-FKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVE  125 (422)
Q Consensus        49 ~f~t~~--gls~~~~g~i~~i~~l~~ai~~p~~G~lsDr~Gr-rrp~ll~g~i~~~i~~~~lf~~~~p~~~~~~~~~~~~  125 (422)
                      +|..+.  +.++...|++....++..++..|+.|+++.|.|+ ||| ++.|.+...++-.+ +. ++.  ..++...++ 
T Consensus        59 pYl~~lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~~~~k~P-li~s~ii~~~g~ll-Y~-~l~--~~~~~~~y~-  132 (488)
T KOG2325|consen   59 PYLQKLDPTATATFFGLVIAASSLGHAIFSLIFGIWSNKTGSVKKP-LIVSFLIAIIGNLL-YL-ALA--YVPNGVKYL-  132 (488)
T ss_pred             hhhhhcCCCCCcchhhHHHHHHHHHHHhcchhhcccccccCCcccC-HHHHHHHHHHHHHH-HH-HHH--hcccchHHH-
Confidence            566664  7788899999999999999999999999999886 889 66788888877543 31 111  111211121 


Q ss_pred             hHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCC----CchHHH
Q 014600          126 TISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTH----ADLENQ  201 (422)
Q Consensus       126 ~~~~~~~~~l~~~~~~~~~~p~~al~~~~t~~~~eR~~l~~~~~~~~~ig~~l~~~~~~~l~~~~~~~g~----~~~~~~  201 (422)
                         .++.+++.|++.+.. ..+.+..++-+. .++|.|+.+....+..+|.++|+.+. +.+..++..|.    +..-+.
T Consensus       133 ---mL~~R~l~Gvg~~n~-a~lR~Y~a~~s~-~~dR~rA~a~~~~~~vlg~ilGp~~q-~~f~~Lg~~G~~i~~~~~~n~  206 (488)
T KOG2325|consen  133 ---MLVARILTGVGVGNF-AVLRAYIADAST-VEDRPRAFAATSGGFVLGIILGPTIQ-LAFTPLGEKGFMILPGLIFNM  206 (488)
T ss_pred             ---HHHHHHHcCcCcccH-HHHHHHHHhccC-ccchHHHHHHhhhHHHHHHHHhHHHH-HHHhhhcCCceEEcCcceEEe
Confidence               222234666665543 346777777665 67899888887777777777777665 44444443221    111234


Q ss_pred             HHHHHHHHHHHHHHHHhhhhccccCcccc
Q 014600          202 YRWIAYSSIFIGCCFVGIFLSRTEEPRLK  230 (422)
Q Consensus       202 ~~~~~~i~~~i~~i~~~i~~~~~~E~~~~  230 (422)
                      |....++.+++.++..++.++..||.+.+
T Consensus       207 YTap~w~m~i~~i~~~v~i~~~f~E~~~~  235 (488)
T KOG2325|consen  207 YTAPAWLMAILWIIYIVIILFFFKEVYRG  235 (488)
T ss_pred             cchHHHHHHHHHHHHHHHHHhheeecccC
Confidence            56666777777777777777788886543

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=98.90  E-value=3e-08  Score=99.10  Aligned_cols=135  Identities=13%  Similarity=0.095  Sum_probs=95.7

Q ss_pred             HHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHhhhhhhhhhhhhcccCCchhHHHHHHHHHHHHHHHhhcCccCccccC
Q 014600           39 TAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILS  118 (422)
Q Consensus        39 ~~~~~~~~l~~f~t~~gls~~~~g~i~~i~~l~~ai~~p~~G~lsDr~Grrrp~ll~g~i~~~i~~~~lf~~~~p~~~~~  118 (422)
                      .......++|.|+.+.|.++...|.+.....+...+..++.|+++||+||||... .+.+..+++...+..       .+
T Consensus       235 ~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~-~~~~~~~~~~~~~~~-------~~  306 (406)
T PRK11551        235 VLYFLLNWLPSLLVGQGLSRSQAGLVQIAFNIGGALGSLLIGALMDRLRPRRVVL-LIYAGILASLAALAA-------AP  306 (406)
T ss_pred             HHHHHHHHHHHHHHhCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH-HHHHHHHHHHHHHHh-------cC
Confidence            3344556778888878999999999999999999999999999999999988744 444444444433221       11


Q ss_pred             CccchhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014600          119 TSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFS  188 (422)
Q Consensus       119 ~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~al~~~~t~~~~eR~~l~~~~~~~~~ig~~l~~~~~~~l~~  188 (422)
                        +.+ .   ..+...+.+.+....+....++.+|..+ +++|++..++.+....+|..+++.+.+.+.+
T Consensus       307 --~~~-~---~~~~~~~~g~~~~~~~~~~~~~~~~~~p-~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~  369 (406)
T PRK11551        307 --SFA-G---MLLAGFAAGLFVVGGQSVLYALAPLFYP-TQVRGTGVGAAVAVGRLGSMAGPLLAGQLLA  369 (406)
T ss_pred             --cHH-H---HHHHHHHHHHHHHhHHHHHHHHHHHHcc-hhhhhhhhhHHHHhhhHHHHHHhhhHhhhhc
Confidence              111 1   1112234555555566677788888876 6789999999988888888888777666554

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=98.90  E-value=1.1e-08  Score=85.19  Aligned_cols=135  Identities=15%  Similarity=0.028  Sum_probs=91.6

Q ss_pred             HHHHHhhhhhhhhhhhhcccCCchhHHHHHHHHHHHHHHHhhcCccCccccCCccchhhhHHHHHHHHHHHHHHHHHHhh
Q 014600           67 SGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVA  146 (422)
Q Consensus        67 i~~l~~ai~~p~~G~lsDr~Grrrp~ll~g~i~~~i~~~~lf~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p  146 (422)
                      ...+...+..|+.|++.||+||||.++ .+.....++...+..       .+  +.+    ...+...+.+++.+.....
T Consensus         6 ~~~~~~~~~~~~~g~~~d~~g~~~~~~-~~~~~~~~~~~~~~~-------~~--~~~----~~~~~~~~~g~~~~~~~~~   71 (141)
T TIGR00880         6 GYALGQLIYSPLSGLLTDRFGRKPVLL-VGLFIFVLSTAMFAL-------SS--NIT----VLIIARFLQGFGAAFALVA   71 (141)
T ss_pred             eehhHHHHHHhhHHHHHhhcchhHHHH-HHHHHHHHHHHHHHH-------hc--cHH----HHHHHHHHHHHHHHHHHHh
Confidence            344566678899999999999999854 555555555544331       11  111    1122234677777777788


Q ss_pred             hhhhhhhccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchHHHHHHHHHHHHHHHHHHHhhhhccccC
Q 014600          147 HMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEE  226 (422)
Q Consensus       147 ~~al~~~~t~~~~eR~~l~~~~~~~~~ig~~l~~~~~~~l~~~~~~~g~~~~~~~~~~~~~i~~~i~~i~~~i~~~~~~E  226 (422)
                      ..++..|..+ +++|++..+..+....+|..+++.+.+.+.+          ..+|++.+.+.+.+.++..+..++..||
T Consensus        72 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (141)
T TIGR00880        72 GAALIADIYP-PEERGVALGLMSAGIALGPLLGPPLGGVLAQ----------FLGWRAPFLFLAILALAAFILLAFLLPE  140 (141)
T ss_pred             HHHHHHHHCC-hhhhhHHHHHHHHhHHHHHHHhHHhHHHHhc----------ccchHHHHHHHHHHHHHHHHHHhhcCCC
Confidence            8889999876 5789999999988888888887766654432          2367777777766666666666665555

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=98.89  E-value=2.6e-08  Score=97.55  Aligned_cols=156  Identities=16%  Similarity=0.099  Sum_probs=105.8

Q ss_pred             HHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHhhhhhhhhhhhhcccCCchhHHHHHHHHHHHHHHHhhcCccCcccc
Q 014600           38 ITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRIL  117 (422)
Q Consensus        38 ~~~~~~~~~l~~f~t~~gls~~~~g~i~~i~~l~~ai~~p~~G~lsDr~Grrrp~ll~g~i~~~i~~~~lf~~~~p~~~~  117 (422)
                      ........+.+.|.++.|.+..+.+.+..+..+...+..++.|+++||+||||. +..+.+..+++..++..  .+    
T Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~-~~~~~~~~~~~~~~~~~--~~----  291 (377)
T TIGR00890       219 VSGLLLIGLYKPYGQSLGLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKT-MSIVFGISAVGMAAMLF--IP----  291 (377)
T ss_pred             HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-hhHHHHHHHHHHHHHHH--cc----
Confidence            333334455666666669999999999999999999999999999999999877 44566666666554432  11    


Q ss_pred             CCccchhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCc
Q 014600          118 STSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHAD  197 (422)
Q Consensus       118 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~al~~~~t~~~~eR~~l~~~~~~~~~ig~~l~~~~~~~l~~~~~~~g~~~  197 (422)
                       .....    .+.....+.+.+++.......++..|..+ +++|++..+..+....+|..+++.+.+.+.+         
T Consensus       292 -~~~~~----~~~~~~~~~g~~~g~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~---------  356 (377)
T TIGR00890       292 -MLNDV----LFLATVALVFFTWGGTISLFPSLVSDIFG-PANSAANYGFLYTAKAVAGIFGGLIASHALT---------  356 (377)
T ss_pred             -cchhH----HHHHHHHHHHHHhccchhccHHHHHHHhh-hhhhhhHhHHHHHHHHHHHHHHHHHHHHHHh---------
Confidence             11111    11111234555666555666778888876 6789999999888888888888776655543         


Q ss_pred             hHHHHHHHHHHHHHHHHHH
Q 014600          198 LENQYRWIAYSSIFIGCCF  216 (422)
Q Consensus       198 ~~~~~~~~~~i~~~i~~i~  216 (422)
                       ..+|++.+.+.+++.+++
T Consensus       357 -~~g~~~~f~~~~~~~~~~  374 (377)
T TIGR00890       357 -EIGFEYTFIVTGAFALTS  374 (377)
T ss_pred             -hhchhhHHHHHHHHHHHh
Confidence             236777777666555544

>PRK10504 putative transporter; Provisional

Probab=98.89  E-value=1e-07  Score=97.38  Aligned_cols=144  Identities=11%  Similarity=-0.035  Sum_probs=100.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHh-CCChhHHHHHHHHHHHHhhhhhhhhhhhhcccCCchhHHHHHHHHHHHHHHHhhcCccC
Q 014600           35 LNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMP  113 (422)
Q Consensus        35 ~~~~~~~~~~~~l~~f~t~~-gls~~~~g~i~~i~~l~~ai~~p~~G~lsDr~Grrrp~ll~g~i~~~i~~~~lf~~~~p  113 (422)
                      ...........+.++|++.. |.++...|+++....+...+..++.|+++||+||||.+ ..+....++...++..  .+
T Consensus       272 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~-~~~~~~~~~~~~~~~~--~~  348 (471)
T PRK10504        272 AGRIGSGMLPFMTPVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNRFGYRRVL-VATTLGLALVSLLFML--VA  348 (471)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHH-HHHHHHHHHHHHHHHh--cc
Confidence            33344444445677788876 99999999999888888888889999999999998884 4566656655444332  11


Q ss_pred             ccccCCccchhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 014600          114 CRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVS  190 (422)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~al~~~~t~~~~eR~~l~~~~~~~~~ig~~l~~~~~~~l~~~~  190 (422)
                           ..+..+.   ..+...+.+++.+....+.+++..+..+ +++|+...+..+....+|..+++.+.+.+++..
T Consensus       349 -----~~~~~~~---~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~g~~ig~~i~g~ll~~~  416 (471)
T PRK10504        349 -----LLGWYYL---LPFVLFLQGMVNSTRFSSMNTLTLKDLP-DNLASSGNSLLSMIMQLSMSIGVTIAGLLLGLF  416 (471)
T ss_pred             -----ccccHHH---HHHHHHHHHHHHHHHHHHHHHHHHHcCC-HHhccchHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence                 1111111   1111234567777777788888888776 578999999988888888888888877777654

>PRK09528 lacY galactoside permease; Reviewed

Probab=98.88  E-value=5.2e-08  Score=98.04  Aligned_cols=177  Identities=8%  Similarity=-0.083  Sum_probs=110.7

Q ss_pred             eeeeccchhHHHHHHHHHHHHHHHHHHh----CCChhHHHHHHHHHHHHhhhhhhhhhhhhcccCCchhHHHHHHHHHHH
Q 014600           27 LYYGSGHMLNDITAACWFTYLLLFLTDI----GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAV  102 (422)
Q Consensus        27 ~~y~~g~~~~~~~~~~~~~~l~~f~t~~----gls~~~~g~i~~i~~l~~ai~~p~~G~lsDr~Grrrp~ll~g~i~~~i  102 (422)
                      +......++....+......++.|+.+.    +.+..+.|.+.++..+..++..++.|+++||+||||. +..+..+.++
T Consensus       226 ~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~-~~~~~~l~~~  304 (420)
T PRK09528        226 WFLVLYVIGVACFYDVFDQQFPNFFASFFATPEQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNA-LLLAGTIMAV  304 (420)
T ss_pred             EeehHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchh-hHHHHHHHHH
Confidence            3333433344444444445567776653    5677889999999999999999999999999999987 4455666666


Q ss_pred             HHHHhhcCccCccccCCccchhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCccchhhHHHH-HHHHHHHHHHHHHH
Q 014600          103 SFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSC-RNAFTMVANLSLYA  181 (422)
Q Consensus       103 ~~~~lf~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~al~~~~t~~~~eR~~l~~~-~~~~~~ig~~l~~~  181 (422)
                      ...++..       .+  +.++.    .....+.+.+++..........++..+ ++.|+...+. .+....+|..+++.
T Consensus       305 ~~~l~~~-------~~--~~~~~----~~~~~l~g~~~~~~~~~~~~~~~~~~~-~~~~a~~~~~~~~~~~~lg~~ig~~  370 (420)
T PRK09528        305 RIIGSGF-------AT--GPLEV----SILKLLHAFEVPFLLVGVFKYITLNFD-VRLSATIYLVGFQFAKQLGAVFLST  370 (420)
T ss_pred             HHHHHHh-------cc--cHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHcC-ccceeeeeeehHHHHHHHHHHHHHH
Confidence            5544331       11  12211    112235566666665566677777765 4566665443 34456677777666


Q ss_pred             HHHHHHhhccCCCCCchHHHHHHHHHHHHHHHHHHHhhhhccccCcc
Q 014600          182 IAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPR  228 (422)
Q Consensus       182 ~~~~l~~~~~~~g~~~~~~~~~~~~~i~~~i~~i~~~i~~~~~~E~~  228 (422)
                      +.+.+.+.          .||+..+.+.+++.++..++.++..|+++
T Consensus       371 ~~G~l~~~----------~G~~~~f~~~~~~~~i~~~~~~~~~~~~~  407 (420)
T PRK09528        371 LAGNLYDS----------IGFQGTYLILGGIVLLFTLISVFTLSGDR  407 (420)
T ss_pred             HHHHHHHh----------hCchHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence            65555442          36777777777776666666666666644

>TIGR00897 2A0118 polyol permease family

Probab=98.88  E-value=6.5e-08  Score=96.85  Aligned_cols=165  Identities=12%  Similarity=0.086  Sum_probs=103.3

Q ss_pred             hhHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHhhhhhhhhhhhhcccCCchhHHHHHHHHHHHHHHHhhcCccC
Q 014600           34 MLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMP  113 (422)
Q Consensus        34 ~~~~~~~~~~~~~l~~f~t~~gls~~~~g~i~~i~~l~~ai~~p~~G~lsDr~Grrrp~ll~g~i~~~i~~~~lf~~~~p  113 (422)
                      +...........|+|.|+++.|.++.+.+.+..+..+...+..++.|+++||+||||+....+.+..+++...+..  .|
T Consensus       232 ~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~l~~~~~~~~l~~--~~  309 (402)
T TIGR00897       232 IINTIGLFGFAVFLPMFVAELGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMNTVRWFGGVGCGIFTLALYY--IP  309 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHH--HH
Confidence            3344444555678888876669999999999999999999999999999999999887543333333333222211  11


Q ss_pred             ccccCCccchhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Q 014600          114 CRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAK  193 (422)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~al~~~~t~~~~eR~~l~~~~~~~~~ig~~l~~~~~~~l~~~~~~~  193 (422)
                      ..   ..+..+.   ..+...+++.+.... .|..+...+..  +++|++..++.+....+|+.+++.+.+.+++.    
T Consensus       310 ~~---~~~~~~~---~~~~~~~~G~~~~~~-~~~~~~~~~~~--~~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~----  376 (402)
T TIGR00897       310 QH---FGHSFAV---ALIIAIALGIFLAGY-VPLAAVFPTLA--PKHKGAAMSVLNLSAGLSAFLAPAIAVLFIGF----  376 (402)
T ss_pred             Hc---cCCcHHH---HHHHHHHHHHHHHHH-HHHHHHHHhhC--cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhh----
Confidence            00   0111111   112223455555543 45556666653  46899999999999999988888777766653    


Q ss_pred             CCCchHHHHHHHHHHHHHHHHHHHhh
Q 014600          194 THADLENQYRWIAYSSIFIGCCFVGI  219 (422)
Q Consensus       194 g~~~~~~~~~~~~~i~~~i~~i~~~i  219 (422)
                            .|+...+.+.+++.++...+
T Consensus       377 ------~g~~~~~~~~a~~~~i~~~~  396 (402)
T TIGR00897       377 ------FGAIGVVWIFAALYVVSAFL  396 (402)
T ss_pred             ------cchHHHHHHHHHHHHHHHHH
Confidence                  24555555555554444333

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=98.87  E-value=6.1e-06  Score=79.19  Aligned_cols=210  Identities=17%  Similarity=0.092  Sum_probs=141.1

Q ss_pred             HHHHHHHHhCCChhHHHHHHHHHHHHhhhhhhhhhhhhcccCCchhHHHHHHHHHHHHHHHhhcCccCccccCCccchhh
Q 014600           46 YLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVE  125 (422)
Q Consensus        46 ~l~~f~t~~gls~~~~g~i~~i~~l~~ai~~p~~G~lsDr~Grrrp~ll~g~i~~~i~~~~lf~~~~p~~~~~~~~~~~~  125 (422)
                      .+...-.|.|+|.+.+|++.++.-+.-++..|+..++..|+|-+|. +..+.++.+++..+=-          ..+..  
T Consensus        34 LL~~Ir~~~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~~g~er~-l~~~Llli~~G~~iR~----------~~~~~--  100 (395)
T COG2807          34 LLDEIRQDLGLSFSVAGLLTTLPLLAFGLFAPAAPRLARRFGEERS-LFLALLLIAAGILIRS----------LGGLP--  100 (395)
T ss_pred             hHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHH-HHHHHHHHHHHHHHHh----------cccHH--
Confidence            3444444459999999999999999999999999999999999888 4456666666643210          01111  


Q ss_pred             hHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchHHHHHHH
Q 014600          126 TISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYRWI  205 (422)
Q Consensus       126 ~~~~~~~~~l~~~~~~~~~~p~~al~~~~t~~~~eR~~l~~~~~~~~~ig~~l~~~~~~~l~~~~~~~g~~~~~~~~~~~  205 (422)
                       .. +.-..+.+.+-+..|+-..+++-+.+  +++-+.+++......++|+.+++.+..|+.+..         .+|+..
T Consensus       101 -~L-~~gt~l~G~gIav~nVLLPslIK~~F--pk~~~~mtglYs~sl~~~aaLaa~lavpla~~~---------~gW~~a  167 (395)
T COG2807         101 -LL-FLGTLLAGAGIAVINVLLPSLIKRDF--PKRVGLMTGLYSTSLGAGAALAAALAVPLAQHS---------GGWRGA  167 (395)
T ss_pred             -HH-HHHHHHHHhhHHHHHHhhhHHHHhhc--ccchhhHHhHHHHHHHHHHHHHhhhhhHHHHhh---------ccHHHH
Confidence             11 11223566666777776677776654  456678888888888888989988888886531         368877


Q ss_pred             HHHHHHHHHHHHhhhhcc-ccCcccccccCCCcchhhhHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhccCcc
Q 014600          206 AYSSIFIGCCFVGIFLSR-TEEPRLKMGLRGNSHARISWAYWFKKILYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMG  284 (422)
Q Consensus       206 ~~i~~~i~~i~~~i~~~~-~~E~~~~~~~~~~~~~~~~~~~~~~n~~f~~~~~~~~~~~~~~~~~~~y~~~y~~~~~~l~  284 (422)
                      ...-+.++++..++.+.- .||+  .+.+++  + ...-..++|||.-|.+.+.+-+++...+....++|.++.|. |++
T Consensus       168 L~~WAl~allAl~~WlPq~~r~~--~~~~~~--~-~~~~~~vw~~~~aW~vtLfmGlqS~~~Y~~~~WLP~ili~~-G~s  241 (395)
T COG2807         168 LGFWALLALLALLIWLPQALREQ--AASIAT--K-LVSVRKVWRSPLAWQVTLFMGLQSLLYYIVIGWLPAILIDR-GLS  241 (395)
T ss_pred             HHHHHHHHHHHHHHHhhhccccc--cccccc--c-cccccccccCchhHHHHHHHHhhHHHHHHHHHHHHHHHHHc-CCC
Confidence            666666666665444333 2221  111111  1 11224578999877777766677788889999999999887 665


Q ss_pred             chh
Q 014600          285 QSA  287 (422)
Q Consensus       285 ~~~  287 (422)
                      +..
T Consensus       242 a~~  244 (395)
T COG2807         242 AAE  244 (395)
T ss_pred             HHH
Confidence            543

>PRK15011 sugar efflux transporter B; Provisional

Probab=98.87  E-value=1.3e-07  Score=94.48  Aligned_cols=160  Identities=11%  Similarity=0.049  Sum_probs=100.7

Q ss_pred             HHHHHHHHHHHHHHh-CCChhHHHHHHHHHHHHhhhhhhhhhhhhcccCCchhHHHHHHHHHHHHHHHhhcCccCccccC
Q 014600           40 AACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILS  118 (422)
Q Consensus        40 ~~~~~~~l~~f~t~~-gls~~~~g~i~~i~~l~~ai~~p~~G~lsDr~Grrrp~ll~g~i~~~i~~~~lf~~~~p~~~~~  118 (422)
                      +.....+++.|+++. |+++.+.|.+..+..+...+..++.|+++||+||||.. ..+.+...+.+..+..       .+
T Consensus       232 ~~~~~~~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~-~~~~~~~~~~~~~~~~-------~~  303 (393)
T PRK15011        232 NSLYIINMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLM-RVAAVAGVCFYAGMLM-------AH  303 (393)
T ss_pred             HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHH-HHHHHHHHHHHHHHHH-------Hh
Confidence            333446788888887 99999999998888888888899999999999999864 4454444443322221       11


Q ss_pred             CccchhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCch
Q 014600          119 TSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADL  198 (422)
Q Consensus       119 ~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~al~~~~t~~~~eR~~l~~~~~~~~~ig~~l~~~~~~~l~~~~~~~g~~~~  198 (422)
                        +.+.. .   +...+..++++.......+...|..+  ++|++..+..+....+|..+++.+.+.+.+.         
T Consensus       304 --~~~~~-l---~~~~l~~~~~g~~~~~~~~~~~~~~p--~~~g~~~~~~~~~~~lg~~~g~~l~G~i~~~---------  366 (393)
T PRK15011        304 --SPAIL-L---GLQLLNAIYIGILGGIGMLYFQDLMP--GQAGSATTLYTNTSRVGWIIAGSLAGIVAEI---------  366 (393)
T ss_pred             --hHHHH-H---HHHHHHHHHHHHHHHHHHHHHHHhCC--CCcchHHHHHHHHHHHHHHHHHHHHHHHHHH---------
Confidence              11111 1   11122333344333344455667664  5688888887777888888888777665542         


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhccccC
Q 014600          199 ENQYRWIAYSSIFIGCCFVGIFLSRTEE  226 (422)
Q Consensus       199 ~~~~~~~~~i~~~i~~i~~~i~~~~~~E  226 (422)
                       .+|+..+.+.+++.++..+.. +..||
T Consensus       367 -~g~~~~~~~~~~~~~~~~~~~-~~~~~  392 (393)
T PRK15011        367 -WNYHAVFWFALVMIIATLFCL-LRIKD  392 (393)
T ss_pred             -hhhHHHHHHHHHHHHHHHHHH-HhhcC
Confidence             367777766655555544443 34454

>PRK03545 putative arabinose transporter; Provisional

Probab=98.86  E-value=6.2e-08  Score=96.49  Aligned_cols=161  Identities=12%  Similarity=0.015  Sum_probs=106.6

Q ss_pred             HHHHHHHHHHHHh-CCChhHHHHHHHHHHHHhhhhhhhhhhhhcccCCchhHHHHHHHHHHHHHHHhhcCccCccccCCc
Q 014600           42 CWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTS  120 (422)
Q Consensus        42 ~~~~~l~~f~t~~-gls~~~~g~i~~i~~l~~ai~~p~~G~lsDr~Grrrp~ll~g~i~~~i~~~~lf~~~~p~~~~~~~  120 (422)
                      ...++++.|+.+. |.++.++|.+..+..+...+..++.|+++||+|||+.  ..+.....++..++..      ..  .
T Consensus       223 ~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~--~~~~~~~~~~~~~l~~------~~--~  292 (390)
T PRK03545        223 TAYSYIEPFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRHPSGFL--LIAIALLLVCLLLLLP------AA--N  292 (390)
T ss_pred             HHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhccchhHH--HHHHHHHHHHHHHHHH------Hh--c
Confidence            3456788888887 9999999999999999999999999999999998754  3344444444332221      01  1


Q ss_pred             cchhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchHH
Q 014600          121 TLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLEN  200 (422)
Q Consensus       121 ~~~~~~~~~~~~~~l~~~~~~~~~~p~~al~~~~t~~~~eR~~l~~~~~~~~~ig~~l~~~~~~~l~~~~~~~g~~~~~~  200 (422)
                      +.. .   ..+..++++++.........+...+..  +++|++..+..+....+|..+++.+.+.+.+.          .
T Consensus       293 ~~~-~---~~~~~~l~g~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~g~~~G~~~~G~~~~~----------~  356 (390)
T PRK03545        293 SEW-H---LSVLSIFWGIAIMCIGLAMQVKVLKLA--PDATDVAMALFSGIFNIGIGAGALLGNQVSLH----------L  356 (390)
T ss_pred             hHH-H---HHHHHHHHHHHHhcchHHHHHHHHHhC--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----------c
Confidence            111 1   111223566666555555666666664  45788888887777788888877776665543          3


Q ss_pred             HHHHHHHHHHHHHHHHHhhhhccccCcc
Q 014600          201 QYRWIAYSSIFIGCCFVGIFLSRTEEPR  228 (422)
Q Consensus       201 ~~~~~~~i~~~i~~i~~~i~~~~~~E~~  228 (422)
                      +++..+.+.+.+.++..+++++..|.++
T Consensus       357 g~~~~~~~~~~~~~~~~~~~~~~~~~~~  384 (390)
T PRK03545        357 GLSSIGYVGAALALAALVWSILIFRRFP  384 (390)
T ss_pred             ChhHHHHHHHHHHHHHHHHHHHHccccc
Confidence            5666677666677776666666666543

>TIGR00899 2A0120 sugar efflux transporter

Probab=98.85  E-value=1.7e-07  Score=92.27  Aligned_cols=159  Identities=11%  Similarity=0.034  Sum_probs=101.5

Q ss_pred             HHHHHHHHHHHHHh-CCChhHHHHHHHHHHHHhhhhhhhhhhhhcccCCchhHHHHHHHHHHHHHHHhhcCccCccccCC
Q 014600           41 ACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILST  119 (422)
Q Consensus        41 ~~~~~~l~~f~t~~-gls~~~~g~i~~i~~l~~ai~~p~~G~lsDr~Grrrp~ll~g~i~~~i~~~~lf~~~~p~~~~~~  119 (422)
                      .....+++.|+++. |.++.+.|.+............++.|+++||+||||.. ..+.+...+....+..       .  
T Consensus       216 ~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~-~~~~~~~~~~~~~~~~-------~--  285 (375)
T TIGR00899       216 ILYIINMPLLIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLM-LLAALAGVAFYTGLAA-------D--  285 (375)
T ss_pred             HHHHhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchhHH-HHHHHHHHHHHHHHHH-------H--
Confidence            34445678888887 99999999998888888888889999999999999874 4444443333322211       1  


Q ss_pred             ccchhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchH
Q 014600          120 STLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLE  199 (422)
Q Consensus       120 ~~~~~~~~~~~~~~~l~~~~~~~~~~p~~al~~~~t~~~~eR~~l~~~~~~~~~ig~~l~~~~~~~l~~~~~~~g~~~~~  199 (422)
                      .+.+ .   ......+.+.+.+.......++..|..+  ++|++..+..+....+|..+++.+.+.+.+.          
T Consensus       286 ~~~~-~---~~~~~~~~g~~~g~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~~g~~~~g~~~~~----------  349 (375)
T TIGR00899       286 NSLW-A---LLMLQLLNAIFIGILAGIGMLYFQDLMP--GRAGAATTLYTNTGRVGWIIAGSVGGILAER----------  349 (375)
T ss_pred             HHHH-H---HHHHHHHHHHHHHHHHHHHHHHHHHhCc--chhhHHHHHHHHHHHHHHHHHHHHHHHHHHh----------
Confidence            1111 1   1112234566666655566677778764  4566888888777888888887776655542          


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhccccC
Q 014600          200 NQYRWIAYSSIFIGCCFVGIFLSRTEE  226 (422)
Q Consensus       200 ~~~~~~~~i~~~i~~i~~~i~~~~~~E  226 (422)
                      .+|+..+.+.++..++..++. ..+||
T Consensus       350 ~g~~~~~~~~~~~~~~~~~~~-~~~~~  375 (375)
T TIGR00899       350 WSYHAVYWFAIVMLIVALFCL-LLIKD  375 (375)
T ss_pred             ccchhHHHHHHHHHHHHHHHH-heecC
Confidence            256666666655555544433 44454

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>TIGR00893 2A0114 d-galactonate transporter

Probab=98.83  E-value=3.4e-08  Score=97.09  Aligned_cols=172  Identities=9%  Similarity=-0.039  Sum_probs=106.8

Q ss_pred             eeeeccchhHHHHHHHHHHHHHHHHHHh-CCChhHHHHHHHHHHHHhhhhhhhhhhhhcccCCchhHHHHHHHHHHHH--
Q 014600           27 LYYGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVS--  103 (422)
Q Consensus        27 ~~y~~g~~~~~~~~~~~~~~l~~f~t~~-gls~~~~g~i~~i~~l~~ai~~p~~G~lsDr~Grrrp~ll~g~i~~~i~--  103 (422)
                      +.+....+...........+++.|+.+. |.++.+.+.+..+..+...+..++.|+++||+|||+..+........++  
T Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  297 (399)
T TIGR00893       218 WGLALGQFLVNIGLGFFLTWFPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARKTAIIAGL  297 (399)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHH
Confidence            3344445555666666778899999887 9999999999999999999999999999999999873222221111111  


Q ss_pred             --HHHhhcCccCccccCCccchhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCccchhhHHHHHHHHHHHHHHHHHH
Q 014600          104 --FSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYA  181 (422)
Q Consensus       104 --~~~lf~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~al~~~~t~~~~eR~~l~~~~~~~~~ig~~l~~~  181 (422)
                        ....+.   .    ...+..+.   .. .....+........+..++..|..+ +++|++..++.+....+|+.+++.
T Consensus       298 ~~~~~~~~---~----~~~~~~~~---~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~g~~~~~~  365 (399)
T TIGR00893       298 VLSLLMFA---T----NYVNIPYA---AL-ALVALGFFGLGAGAIGWALISDNAP-GNIAGLTGGLINSLGNLGGIVGPI  365 (399)
T ss_pred             HHHHHHHH---h----ccchhHHH---HH-HHHHHHHhchhhhhHHHHHHHhhcC-hhHHHHHHHHHHHHHHHhhhhhhH
Confidence              111111   0    00111111   11 1112222222256677888889876 678999999999988888888776


Q ss_pred             HHHHHHhhccCCCCCchHHHHHHHHHHHHHHHHHHHhh
Q 014600          182 IAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGI  219 (422)
Q Consensus       182 ~~~~l~~~~~~~g~~~~~~~~~~~~~i~~~i~~i~~~i  219 (422)
                      +.+.+.+..+         +|++.+.+.+++.++..+.
T Consensus       366 i~g~l~~~~g---------~~~~~~~~~~~~~~~~~~~  394 (399)
T TIGR00893       366 VIGAIAATTG---------SFAGALMVVAALALIGALS  394 (399)
T ss_pred             HhhhhccCCC---------chhHHHHHHHHHHHHHHHH
Confidence            6655543211         2566665555555544433

>TIGR00883 2A0106 metabolite-proton symporter

Probab=98.83  E-value=7.9e-08  Score=94.75  Aligned_cols=145  Identities=17%  Similarity=0.085  Sum_probs=96.4

Q ss_pred             hhHHHHHHHHHHHHHHHHHHh-CCChhHHHHHHHHHHHHhhhhhhhhhhhhcccCCchhHHHHHHHHHHHHHHHhhcCcc
Q 014600           34 MLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCM  112 (422)
Q Consensus        34 ~~~~~~~~~~~~~l~~f~t~~-gls~~~~g~i~~i~~l~~ai~~p~~G~lsDr~Grrrp~ll~g~i~~~i~~~~lf~~~~  112 (422)
                      +..........++++.|+++. |.+..+.+.+..+..+...+..|+.|+++||+||||..+..+......+..++..  .
T Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~--~  306 (394)
T TIGR00883       229 IATTTTFYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLMA--L  306 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHH--H
Confidence            344455555667899999877 9999999999999999999999999999999999988654443333323221110  0


Q ss_pred             CccccCCccchhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCccchhhHHHHH-HHHHHHHHHHHHHHHHHHHhh
Q 014600          113 PCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCR-NAFTMVANLSLYAIAFIVFSV  189 (422)
Q Consensus       113 p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~al~~~~t~~~~eR~~l~~~~-~~~~~ig~~l~~~~~~~l~~~  189 (422)
                          ....+.+ .   ......+.+.+++....+..++.+|.++ +++|++..+.. +....+|..+++.+.+.+.+.
T Consensus       307 ----~~~~~~~-~---~~~~~~~~g~~~~~~~~~~~~~~~~~~p-~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~  375 (394)
T TIGR00883       307 ----LDSGSFT-L---FFFLVLGLALIGGMYTGPMGSFLPELFP-TEVRYTGASLAYNLAGAIFGGFAPYIAAALVAM  375 (394)
T ss_pred             ----hcCCchH-H---HHHHHHHHHHHHHHHhhhHHHHHHHhCC-ccceeeEeeehhHhHHHHHhhHHHHHHHHHHHH
Confidence                0011111 1   1112235667777778888999999987 56788877763 344456666766666666543

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=98.81  E-value=6.8e-08  Score=93.44  Aligned_cols=165  Identities=16%  Similarity=0.159  Sum_probs=120.7

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHh-CCChhHHHHHHHHHHHHhhhhhhhhhhhhcccCCchhHHHHHHHHHHHHHHHhhcC
Q 014600           32 GHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGG  110 (422)
Q Consensus        32 g~~~~~~~~~~~~~~l~~f~t~~-gls~~~~g~i~~i~~l~~ai~~p~~G~lsDr~Grrrp~ll~g~i~~~i~~~~lf~~  110 (422)
                      ..+...........+.+.+..+. |.+..+.+.+..+..+...+..++.|+++||+|||+..+..+.....++...+.. 
T Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-  261 (352)
T cd06174         183 AFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLAL-  261 (352)
T ss_pred             HHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH-
Confidence            34445555566677889999988 9999999999999999999999999999999999882355666776666554331 


Q ss_pred             ccCccccCCccchhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 014600          111 CMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVS  190 (422)
Q Consensus       111 ~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~al~~~~t~~~~eR~~l~~~~~~~~~ig~~l~~~~~~~l~~~~  190 (422)
                            .+  +.+    ...+...+.+.+.+.......++..|..+ +++|++..+..+....+|..+++.+.+.+.+. 
T Consensus       262 ------~~--~~~----~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~-  327 (352)
T cd06174         262 ------AP--SLA----LLLVALLLLGFGLGFAFPALLTLASELAP-PEARGTASGLFNTFGSLGGALGPLLAGLLLDT-  327 (352)
T ss_pred             ------hc--cHH----HHHHHHHHHHHHHhccchhHHHHHHhhcC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-
Confidence                  11  111    11222346778888888888999999876 58999999999999999998888776665432 


Q ss_pred             cCCCCCchHHHHHHHHHHHHHHHHHHHhhh
Q 014600          191 TAKTHADLENQYRWIAYSSIFIGCCFVGIF  220 (422)
Q Consensus       191 ~~~g~~~~~~~~~~~~~i~~~i~~i~~~i~  220 (422)
                               .+|++.+.+.+++.++..++.
T Consensus       328 ---------~~~~~~~~~~~~~~~i~~i~~  348 (352)
T cd06174         328 ---------GGYGGVFLILAALALLAALLL  348 (352)
T ss_pred             ---------cCcchHHHHHHHHHHHHHHHh
Confidence                     356666666666666655443

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=98.81  E-value=8.9e-08  Score=97.44  Aligned_cols=170  Identities=8%  Similarity=-0.096  Sum_probs=96.4

Q ss_pred             eccchhHHHHHHHHHHHHHHHHHHh-CCChhHHHHHHHHHHHHhhhhhhhhhhhhcccC--CchhHHHHHHHHHHHHHHH
Q 014600           30 GSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFG--HFKIWHGAGSVLVAVSFSS  106 (422)
Q Consensus        30 ~~g~~~~~~~~~~~~~~l~~f~t~~-gls~~~~g~i~~i~~l~~ai~~p~~G~lsDr~G--rrrp~ll~g~i~~~i~~~~  106 (422)
                      .+..+...........|+|.|+++. |++..+++.+..+..+...+..++.|+++||++  ||++.......+..++..+
T Consensus       259 ~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~~~~~~~~l~~~~~~~  338 (452)
T PRK11273        259 AIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIV  338 (452)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHH
Confidence            3333334444455667999999997 999999999998888888899999999999984  4443222222333333322


Q ss_pred             hhcCccCccccCCccchhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCccchhhHHHHHHHHHHHHHHH-HHHHHHH
Q 014600          107 VFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLS-LYAIAFI  185 (422)
Q Consensus       107 lf~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~al~~~~t~~~~eR~~l~~~~~~~~~ig~~l-~~~~~~~  185 (422)
                      ++.  .+     ..+.. . . .. ...+.+...........++..|..+ +++|++..++.+...++|+.+ ++.+.+.
T Consensus       339 ~~~--~~-----~~~~~-~-~-~~-~~~~~g~~~~~~~~~~~~~~~~~~p-~~~~g~~~g~~~~~~~~g~~~~g~~v~g~  406 (452)
T PRK11273        339 YWL--NP-----AGNPT-V-D-MA-CMIVIGFLIYGPVMLIGLHALELAP-KKAAGTAAGFTGLFGYLGGSVAASAIVGY  406 (452)
T ss_pred             HHH--hc-----ccChH-H-H-HH-HHHHHHHHHHhHHHHHHHHHHHHcC-hhhhhhHHHHHHHHHHHHHHHhhhhhHHH
Confidence            221  11     11111 1 1 11 1112222221111222344556664 578999999988777776544 4555544


Q ss_pred             HHhhccCCCCCchHHHHHHHHHHHHHHHHHHHhhhh
Q 014600          186 VFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFL  221 (422)
Q Consensus       186 l~~~~~~~g~~~~~~~~~~~~~i~~~i~~i~~~i~~  221 (422)
                      +.+          ..+|+..+.+.+..++++.+...
T Consensus       407 l~~----------~~g~~~~f~~~~~~~~~~~~~~~  432 (452)
T PRK11273        407 TVD----------FFGWDGGFMVMIGGSILAVILLI  432 (452)
T ss_pred             HHH----------HhcchHHHHHHHHHHHHHHHHHH
Confidence            443          23566666666555555444333

>PRK11663 regulatory protein UhpC; Provisional

Probab=98.81  E-value=9.6e-08  Score=96.68  Aligned_cols=171  Identities=9%  Similarity=-0.036  Sum_probs=102.9

Q ss_pred             HHHHHHHHHHHHHHHHHHh-CCChhHHHHHHHHHHHHhhhhhhhhhhhhcccC--CchhHHHHHHHHHHHHHHHhhcCcc
Q 014600           36 NDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFG--HFKIWHGAGSVLVAVSFSSVFGGCM  112 (422)
Q Consensus        36 ~~~~~~~~~~~l~~f~t~~-gls~~~~g~i~~i~~l~~ai~~p~~G~lsDr~G--rrrp~ll~g~i~~~i~~~~lf~~~~  112 (422)
                      ....+....+++|.|+++. |+++.+++...++..+...+..++.|+++||++  ||++......+...+....++.  .
T Consensus       255 ~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~~~~~r~~~~~~~~~~~~~~~~~~~~--~  332 (434)
T PRK11663        255 VYVVRAAINDWGNLYMSETLGVDLVTANSAVSMFELGGFIGALVAGWGSDKLFNGNRGPMNLIFAAGILLSVGSLWL--M  332 (434)
T ss_pred             HHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCccHHHHHHHHHHHHHHHHHHH--c
Confidence            3344445567889999887 999999999999999999999999999999983  3444222222222222222221  1


Q ss_pred             CccccCCccchhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 014600          113 PCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTA  192 (422)
Q Consensus       113 p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~al~~~~t~~~~eR~~l~~~~~~~~~ig~~l~~~~~~~l~~~~~~  192 (422)
                      |     ..+..+....+    ...+.+.............|..+ +++|++..++.+....+|+.+++.+.+.+.+.   
T Consensus       333 ~-----~~~~~~~~~~~----~~~g~~~~~~~~~~~~~~~~~~~-~~~~g~~~g~~~~~~~~g~~~~p~~~g~l~~~---  399 (434)
T PRK11663        333 P-----FASYVMQAACF----FTIGFFVFGPQMLIGMAAAECSH-KEAAGAATGFVGLFAYLGAALSGYPLAKVLEI---  399 (434)
T ss_pred             c-----cccHHHHHHHH----HHHHHHHhhHHHHHHHHHHhccc-HhhHHhHHHHHHHHHHHHHHHhcccHHHHHHh---
Confidence            2     11111111111    11221111111122334566654 67899999999999999998887666655532   


Q ss_pred             CCCCchHHHHHHHHHHHHHHHHHHHhhhhccccCcc
Q 014600          193 KTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPR  228 (422)
Q Consensus       193 ~g~~~~~~~~~~~~~i~~~i~~i~~~i~~~~~~E~~  228 (422)
                             .+|...+++.++++++..+.+.+..|++.
T Consensus       400 -------~g~~~~f~~~~~~~~~~~~~~~~~~~~~~  428 (434)
T PRK11663        400 -------WHWTGFFVVISIAAGISALLLLPFLNAQA  428 (434)
T ss_pred             -------cccHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence                   35777777777777666666666666654

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=98.81  E-value=2.5e-07  Score=92.31  Aligned_cols=160  Identities=16%  Similarity=0.058  Sum_probs=101.1

Q ss_pred             HHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHhhhhhhhhhhhhcccCCchhHHHHHHHHHHHHHHHhhcCccCccc
Q 014600           37 DITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRI  116 (422)
Q Consensus        37 ~~~~~~~~~~l~~f~t~~gls~~~~g~i~~i~~l~~ai~~p~~G~lsDr~Grrrp~ll~g~i~~~i~~~~lf~~~~p~~~  116 (422)
                      ...+.....+++.|+.+.|.+  ..+.......+...+..++.|++.||+||||. +..+....+++..++..       
T Consensus       229 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~-~~~~~~~~~~~~~~~~~-------  298 (399)
T PRK05122        229 SIGFGTIATFITLYYAARGWD--GAALALTLFGVAFVGARLLFGNLINRLGGLRV-AIVSLLVEILGLLLLWL-------  298 (399)
T ss_pred             HHHHHHHHHHHHHHHHHcccc--cchHHHHHHHHHHHHHHHHHHHHHHHhccHHH-HHHHHHHHHHHHHHHHH-------
Confidence            334445567788888776663  34555666667777888999999999999876 44565666665544331       


Q ss_pred             cCCccchhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCC
Q 014600          117 LSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHA  196 (422)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~al~~~~t~~~~eR~~l~~~~~~~~~ig~~l~~~~~~~l~~~~~~~g~~  196 (422)
                      .+  +.+ .   ..+..++.+++++.......+...+..+ +++|++..++.+....+|..+++.+.+.+.+        
T Consensus       299 ~~--~~~-~---~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~--------  363 (399)
T PRK05122        299 AP--SPW-M---ALIGAALTGFGFSLVFPALGVEAVKRVP-PQNRGAALGAYSVFLDLSLGITGPLAGLVAS--------  363 (399)
T ss_pred             hc--cHH-H---HHHHHHHHHHhHHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------
Confidence            11  111 1   1222345666666655555566667654 6789999999888888887776655554443        


Q ss_pred             chHHHHHHHHHHHHHHHHHHHhhhhcc
Q 014600          197 DLENQYRWIAYSSIFIGCCFVGIFLSR  223 (422)
Q Consensus       197 ~~~~~~~~~~~i~~~i~~i~~~i~~~~  223 (422)
                        ..+|++.+.+.+.+.+++.++..+.
T Consensus       364 --~~g~~~~~~~~~~~~~~~~~~~~~~  388 (399)
T PRK05122        364 --WFGYPSIFLAAALAALLGLALTWLL  388 (399)
T ss_pred             --HcCHHHHHHHHHHHHHHHHHHHHHh
Confidence              2367777776666666655544443

>PRK10489 enterobactin exporter EntS; Provisional

Probab=98.80  E-value=2.8e-07  Score=92.66  Aligned_cols=161  Identities=8%  Similarity=-0.092  Sum_probs=106.9

Q ss_pred             HHHHHHHHHHHHh-CCChhHHHHHHHHHHHHhhhhhhhhhhhhcccCCchhHHHHHHHHHHHHHHHhhcCccCccccCCc
Q 014600           42 CWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTS  120 (422)
Q Consensus        42 ~~~~~l~~f~t~~-gls~~~~g~i~~i~~l~~ai~~p~~G~lsDr~Grrrp~ll~g~i~~~i~~~~lf~~~~p~~~~~~~  120 (422)
                      ....+++.|.++. |.++...|.+..+..+...+..++.|++.||.+++|. +..+.+..++++.++..       .+  
T Consensus       241 ~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~-l~~~~~~~~~~~~~~~~-------~~--  310 (417)
T PRK10489        241 AVRVLYPALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSARPGLL-MLLSTLGSFLAVGLFGL-------MP--  310 (417)
T ss_pred             hHHHhhHHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhccCcchH-HHHHHHHHHHHHHHHHc-------cc--
Confidence            3456788899996 9999999999999999999999999999999766655 55566666665544321       11  


Q ss_pred             cchhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchHH
Q 014600          121 TLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLEN  200 (422)
Q Consensus       121 ~~~~~~~~~~~~~~l~~~~~~~~~~p~~al~~~~t~~~~eR~~l~~~~~~~~~ig~~l~~~~~~~l~~~~~~~g~~~~~~  200 (422)
                       ..+.   ..+...+++++.+.......++..+..+ ++.|++..++.+....+|..+++.+.+.+.+..          
T Consensus       311 -~~~~---~~~~~~~~g~~~~~~~~~~~~~~~~~~p-~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~----------  375 (417)
T PRK10489        311 -MWIL---AVLCLALFGYLSAISSLLQYTLLQTQTP-DEMLGRINGLWTAQNVTGDAIGAALLGGLGAMM----------  375 (417)
T ss_pred             -hHHH---HHHHHHHHHHHHHHHHHHHHHHHHhhCC-HHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHh----------
Confidence             1111   1111234666666666666777778775 578999999998888888888888877666532          


Q ss_pred             HHHHHHHHHHHHHHHHHhhhhccccCc
Q 014600          201 QYRWIAYSSIFIGCCFVGIFLSRTEEP  227 (422)
Q Consensus       201 ~~~~~~~i~~~i~~i~~~i~~~~~~E~  227 (422)
                      ++...+.+.+.+.++...+....++|.
T Consensus       376 g~~~~~~~~~~~~~~~~~~~~~~~~~~  402 (417)
T PRK10489        376 TPVASASASGFGLLIIGVLLLLVLGEL  402 (417)
T ss_pred             chhhHHHHHHHHHHHHHHHHHHhcccc
Confidence            333344444444444444444455553

>PRK09952 shikimate transporter; Provisional

Probab=98.77  E-value=4.7e-07  Score=91.76  Aligned_cols=171  Identities=12%  Similarity=0.005  Sum_probs=102.0

Q ss_pred             HHHHHHHHHHHHHHHHHh-CCChhHHHHHHHHHHHHhhhhhhhhhhhhcccCCchhHHHHHHHHHHHHHHHhhcCccCcc
Q 014600           37 DITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCR  115 (422)
Q Consensus        37 ~~~~~~~~~~l~~f~t~~-gls~~~~g~i~~i~~l~~ai~~p~~G~lsDr~Grrrp~ll~g~i~~~i~~~~lf~~~~p~~  115 (422)
                      ........++++.|.++. |++......+..+..+...+..|+.|+++||+||||.. +.+.+..+++...++.   .  
T Consensus       263 ~~~~~~~~~~~~~y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~-~~~~~~~~~~~~~~~~---~--  336 (438)
T PRK09952        263 LLTMYIVTAFALNYSTQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADRFGRRRVY-ITGALIGTLSAFPFFM---A--  336 (438)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHH-HHHHHHHHHHHHHHHH---H--
Confidence            334445567888888887 99988776666667777888899999999999999874 4555544443322221   0  


Q ss_pred             ccCCccchhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCccchhhHHHHHHHH-HHHHHHHHHHHHHHHHhhccCCC
Q 014600          116 ILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAF-TMVANLSLYAIAFIVFSVSTAKT  194 (422)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~al~~~~t~~~~eR~~l~~~~~~~-~~ig~~l~~~~~~~l~~~~~~~g  194 (422)
                      .. ..+..+.   .++...+.+++.+....+..++.+|..+ .+.|....++.+.. ..+|+.+++.+.+.+++..+   
T Consensus       337 ~~-~~~~~~~---~~~~~~l~~~~~~~~~~~~~~~~~e~~p-~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~---  408 (438)
T PRK09952        337 LE-AQSIFWI---VFFSIMLANIAHDMVVCVQQPMFTEMFG-ASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYFG---  408 (438)
T ss_pred             HH-cCChHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHCC-cchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcC---
Confidence            00 1111111   1111234556666667778899999886 47788777775433 33666666666655554321   


Q ss_pred             CCchHHHHHHHHHHHHHHHHHHHhhhhccccCc
Q 014600          195 HADLENQYRWIAYSSIFIGCCFVGIFLSRTEEP  227 (422)
Q Consensus       195 ~~~~~~~~~~~~~i~~~i~~i~~~i~~~~~~E~  227 (422)
                           .+|...+...++.+++..+.. +..||+
T Consensus       409 -----~~~~~~~~~~~~~~~i~~v~~-~~~~~~  435 (438)
T PRK09952        409 -----GSWHSVAIYLLAGCLISAMTA-LLMKDN  435 (438)
T ss_pred             -----CCchHHHHHHHHHHHHHHHHH-HHcccc
Confidence                 135555554544454443333 345663

>PRK03633 putative MFS family transporter protein; Provisional

Probab=98.74  E-value=8.6e-07  Score=88.01  Aligned_cols=151  Identities=13%  Similarity=0.060  Sum_probs=97.6

Q ss_pred             HHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHhhhhhhhhhhhhcccCCchhHHHHHHHHHHHHHHHhhcCccCccccC
Q 014600           39 TAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILS  118 (422)
Q Consensus        39 ~~~~~~~~l~~f~t~~gls~~~~g~i~~i~~l~~ai~~p~~G~lsDr~Grrrp~ll~g~i~~~i~~~~lf~~~~p~~~~~  118 (422)
                      ......+++|.|+++.|.++..+|.+.++..+...+..++.|+++||+|||+. +..+....+++...+.    +     
T Consensus       215 ~~~~~~~~lp~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~-l~~~~~~~~~~~~~~~----~-----  284 (381)
T PRK03633        215 VLGSLYGLMPLYLNHQGMSDASIGFWMALLVSAGILGQWPIGRLADRFGRLLV-LRVQVFVVILGSIAML----S-----  284 (381)
T ss_pred             HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcHHH-HHHHHHHHHHHHHHHh----h-----
Confidence            33445567888887779999999999999999999999999999999999876 5555555555543322    1     


Q ss_pred             CccchhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCch
Q 014600          119 TSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADL  198 (422)
Q Consensus       119 ~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~al~~~~t~~~~eR~~l~~~~~~~~~ig~~l~~~~~~~l~~~~~~~g~~~~  198 (422)
                      .  .. .    .....+++.+.........++..|..+ ++++....+......++|..+++.+.+.+.+.         
T Consensus       285 ~--~~-~----~~~~~l~g~~~~~~~p~~~~~~~~~~~-~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~~---------  347 (381)
T PRK03633        285 Q--AA-M----APALFILGAAGFTLYPVAMAWACEKVE-HHELVAMNQALLLSYTVGSLLGPSFTAMLMQN---------  347 (381)
T ss_pred             h--HH-H----HHHHHHHHHHHHhHHHHHHHHHHccCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------
Confidence            0  00 0    011123444433444555666677664 45555566665667788888888777766543         


Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q 014600          199 ENQYRWIAYSSIFIGCCFV  217 (422)
Q Consensus       199 ~~~~~~~~~i~~~i~~i~~  217 (422)
                       .++.+.+.+.+.+.++..
T Consensus       348 -~g~~~~f~~~~~~~l~~~  365 (381)
T PRK03633        348 -YSDNLLFIMIASVSFIYL  365 (381)
T ss_pred             -hCccHHHHHHHHHHHHHH
Confidence             245666666655555443

>PRK03699 putative transporter; Provisional

Probab=98.73  E-value=3.4e-07  Score=91.34  Aligned_cols=135  Identities=8%  Similarity=0.003  Sum_probs=86.7

Q ss_pred             HHHHHHHHHHHHHHHHh-CCChhHHHHHHHHHHHHhhhhhhhhhhhhcccCCchhHHHHHHHHHHHHHHHhhcCccCccc
Q 014600           38 ITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRI  116 (422)
Q Consensus        38 ~~~~~~~~~l~~f~t~~-gls~~~~g~i~~i~~l~~ai~~p~~G~lsDr~Grrrp~ll~g~i~~~i~~~~lf~~~~p~~~  116 (422)
                      ..+.....|+|.|+++. |+++.+.|.+.+...+...+..++.|+++||+||||... .+....++...++..       
T Consensus       219 ~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~l~-~~~~~~~~~~~~~~~-------  290 (394)
T PRK03699        219 LAQLTFISWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFFDLQRILT-VLAGLALVLMYLFVN-------  290 (394)
T ss_pred             HHHHHHHHHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHhchhhHHH-HHHHHHHHHHHHHHH-------
Confidence            33445567899999887 999999999999999999999999999999999988754 344444433322211       


Q ss_pred             cCCccchhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014600          117 LSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFS  188 (422)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~al~~~~t~~~~eR~~l~~~~~~~~~ig~~l~~~~~~~l~~  188 (422)
                      .+  +..+..+    ..++.+++.+.......+...+..+  +++.+..+.-.....+|..+++.+.+.+.+
T Consensus       291 ~~--~~~~~~~----~~~~~G~~~~~~~~~~~~~~~~~~~--~~~~~~~g~~~~~~~~g~~i~p~~~G~l~~  354 (394)
T PRK03699        291 TD--DPSHLLY----AILGLGFFSSAIYTTIITLGSQQTK--VASPKLVNFILTCGTIGTMLTFVVTSPIVA  354 (394)
T ss_pred             cC--CchHHHH----HHHHHHHHHHHHHHHHHHHHHHHcc--CCCHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence            11  1111111    1224555444444444555666543  345555666666677888887777666654

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=98.72  E-value=4.1e-07  Score=90.75  Aligned_cols=166  Identities=11%  Similarity=0.055  Sum_probs=107.5

Q ss_pred             HHHHHHHHHHHHHHHHHh-CCCh---hHHHHHHHHHHHHhhhhhhhhhhhhcccCCchhHHHHHHHHHHHHHHHhhcCcc
Q 014600           37 DITAACWFTYLLLFLTDI-GLSP---RGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCM  112 (422)
Q Consensus        37 ~~~~~~~~~~l~~f~t~~-gls~---~~~g~i~~i~~l~~ai~~p~~G~lsDr~Grrrp~ll~g~i~~~i~~~~lf~~~~  112 (422)
                      ........++++.|..+. +-..   ...|.+..+..+...+..|..|+++||+||||..+ .+.....+....+..   
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~-~~~~~~~~~~~~~~~---  307 (408)
T PRK09874        232 QVATGSIAPILTLYVRELAGNVSNIAFISGMIASVPGVAALLSAPRLGKLGDRIGPEKILI-TALIFSVLLLIPMSF---  307 (408)
T ss_pred             HHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHH-HHHHHHHHHHHHHHH---
Confidence            334444556777888876 3322   23566677777888889999999999999988744 555555544433221   


Q ss_pred             CccccCCccchhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 014600          113 PCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTA  192 (422)
Q Consensus       113 p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~al~~~~t~~~~eR~~l~~~~~~~~~ig~~l~~~~~~~l~~~~~~  192 (422)
                          .+  +.+ .   ..+..++.+++.+.......++..+..+ +++|++..+..+....+|..+++.+++.+.+    
T Consensus       308 ----~~--~~~-~---~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~----  372 (408)
T PRK09874        308 ----VQ--TPL-Q---LGILRFLLGAADGALLPAVQTLLVYNSS-NQIAGRIFSYNQSFRDIGNVTGPLMGAAISA----  372 (408)
T ss_pred             ----hc--cHH-H---HHHHHHHHHhhhHhhHHHHHHHHHHhCC-cccceeeehHHHHHHHHHHHhhHHHHHHHHh----
Confidence                11  111 1   1122235677777777777777777654 5778999888888888888888877666543    


Q ss_pred             CCCCchHHHHHHHHHHHHHHHHHHHhhhhccccCc
Q 014600          193 KTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEP  227 (422)
Q Consensus       193 ~g~~~~~~~~~~~~~i~~~i~~i~~~i~~~~~~E~  227 (422)
                            ..+|++.+.+.+++.++..++.++..|++
T Consensus       373 ------~~g~~~~f~~~~~~~l~~~~~~~~~~~~~  401 (408)
T PRK09874        373 ------NYGFRAVFLVTAGVVLFNAVYSWNSLRRR  401 (408)
T ss_pred             ------hcchhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence                  23678888877777777666665544443

>PRK12382 putative transporter; Provisional

Probab=98.72  E-value=6e-07  Score=89.36  Aligned_cols=159  Identities=16%  Similarity=0.029  Sum_probs=105.3

Q ss_pred             HHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHhhhhhhhhhhhhcccCCchhHHHHHHHHHHHHHHHhhcCccCcccc
Q 014600           38 ITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRIL  117 (422)
Q Consensus        38 ~~~~~~~~~l~~f~t~~gls~~~~g~i~~i~~l~~ai~~p~~G~lsDr~Grrrp~ll~g~i~~~i~~~~lf~~~~p~~~~  117 (422)
                      ........+++.|+++.|.+.  .+.......+...+..|+.|+++||+||||. +..+....++++.++..       .
T Consensus       230 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~-~~~~~~~~~~~~~~~~~-------~  299 (392)
T PRK12382        230 VGFAVIGTFVSLYFASKGWAM--AGFTLTAFGGAFVLMRVLFGWMPDRFGGVKV-AIVSLLVETVGLLLLWL-------A  299 (392)
T ss_pred             HHHhHHHHHHHHHHHhcCCch--hHHHHHHHHHHHHHHHHHHHHHHHhcCCCee-hHHHHHHHHHHHHHHHH-------c
Confidence            334455677788888777654  4555666777778889999999999999877 55666666666554331       1


Q ss_pred             CCccchhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCc
Q 014600          118 STSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHAD  197 (422)
Q Consensus       118 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~al~~~~t~~~~eR~~l~~~~~~~~~ig~~l~~~~~~~l~~~~~~~g~~~  197 (422)
                      +  +.+ .   ..+...+.+++++....+..+...+..+ +++|++..+..+....+|..+++.+.+.+.+.        
T Consensus       300 ~--~~~-~---~~~~~~l~g~~~~~~~~~~~~~~~~~~~-~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~--------  364 (392)
T PRK12382        300 P--TAW-V---ALAGAALTGAGCSLIFPALGVEVVKRVP-SQVRGTALGGYAAFQDIAYGVSGPLAGMLATS--------  364 (392)
T ss_pred             c--cHH-H---HHHHHHHHHHHHHhHHHHHHHHHHHhcC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------
Confidence            1  111 1   1112235667777666666777777764 68899999999888888888887766655542        


Q ss_pred             hHHHHHHHHHHHHHHHHHHHhhhhcc
Q 014600          198 LENQYRWIAYSSIFIGCCFVGIFLSR  223 (422)
Q Consensus       198 ~~~~~~~~~~i~~~i~~i~~~i~~~~  223 (422)
                        .+|++.+.+.+.+.++..++..+.
T Consensus       365 --~g~~~~~~~~~~~~~~~~~~~~~~  388 (392)
T PRK12382        365 --FGYPSVFLAGAISAVLGIIVTILS  388 (392)
T ss_pred             --hCchHHHHHHHHHHHHHHHHHHhh
Confidence              367777776666666555544433

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=98.71  E-value=1.9e-07  Score=91.02  Aligned_cols=181  Identities=13%  Similarity=0.012  Sum_probs=111.1

Q ss_pred             ceeeeeeeccchhHHHHHHHHHHHHHHHHHHh-CCChhHHHHHHHHHHHHhhhhhhhhhhhhcccCCchhHHHHHHHHHH
Q 014600           23 RWSVLYYGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVA  101 (422)
Q Consensus        23 ~~~~~~y~~g~~~~~~~~~~~~~~l~~f~t~~-gls~~~~g~i~~i~~l~~ai~~p~~G~lsDr~Grrrp~ll~g~i~~~  101 (422)
                      .++.+.++.--+..--.+.....+++.|+++. |+++.++|.+.....+..++.-|+.|+++||+|.+|..+. ....++
T Consensus       217 ~~~~W~lsllY~~tFG~Fvgfs~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~rv~~~-~f~~~~  295 (417)
T COG2223         217 NKDTWLLSLLYFATFGGFVGFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRIGGRRVTLA-VFVGMA  295 (417)
T ss_pred             CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhhccchhHHHH-HHHHHH
Confidence            44555555554544455556778999999998 9999999999999999999999999999999999888554 444444


Q ss_pred             HHHHHhhcCccCccccCCccchhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCccchhhHHHHHHHHHHHHHHHHHH
Q 014600          102 VSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYA  181 (422)
Q Consensus       102 i~~~~lf~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~al~~~~t~~~~eR~~l~~~~~~~~~ig~~l~~~  181 (422)
                      ++...+..+ .+ ......+.    +.+....+...++.+.-+-....++|.+.+  +|-+.+.++....+++|+...+.
T Consensus       296 ~~~~~l~~~-~~-~~~~~~~~----~~~~~~~l~l~~~~G~GnGsvfk~Ip~if~--~~~G~v~G~vga~G~lGGf~lp~  367 (417)
T COG2223         296 LAAALLSLF-LT-GFGHGGSF----VVFVAVFLALFVFAGLGNGSVFKMIPVIFP--KETGAVTGIVGAIGGLGGFFLPL  367 (417)
T ss_pred             HHHHHHHcc-cc-ccccCcch----HHHHHHHHHHHHHhccCcchheeechHHHH--hhhhHHHHHHHHhccccccchhH
Confidence            444443321 11 11100111    222222233455555666666778887764  47777888877777777655443


Q ss_pred             HHHHHHhhccCCCCCchHHHHHHHHHHHHHHHHHHHhhhh
Q 014600          182 IAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFL  221 (422)
Q Consensus       182 ~~~~l~~~~~~~g~~~~~~~~~~~~~i~~~i~~i~~~i~~  221 (422)
                      ..+-..+..     +    .+...+.++....+++....+
T Consensus       368 ~~g~~~~~t-----g----~~~~~f~~~~~~~~~a~v~~~  398 (417)
T COG2223         368 AFGVSLDLT-----G----SYTGAFMLLLAFYLVALVLTW  398 (417)
T ss_pred             HHHHHHHhc-----c----cHHHHHHHHHHHHHHHHHHHH
Confidence            322222211     1    244445555555555554443

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=98.71  E-value=1.4e-07  Score=96.32  Aligned_cols=168  Identities=11%  Similarity=0.002  Sum_probs=103.6

Q ss_pred             HHHHHHHHhCCChhHHHHHHHHHHHHhhhhhhhhhhhhcccCCchhHHHHHHHHHHHHHHHhhcCccCccccCCccchhh
Q 014600           46 YLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVE  125 (422)
Q Consensus        46 ~l~~f~t~~gls~~~~g~i~~i~~l~~ai~~p~~G~lsDr~Grrrp~ll~g~i~~~i~~~~lf~~~~p~~~~~~~~~~~~  125 (422)
                      |.|.++.+.|.+....+.......+...+..++.|+++||+|||+. ++.+.+..+++..++..  ..   ..+. ....
T Consensus       293 ~~p~i~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~r~~-~i~~~~~~~v~~~~l~~--~~---~~~~-~~~~  365 (479)
T PRK10077        293 YAPEIFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPL-QIIGALGMAIGMFSLGT--AF---YTQA-PGIV  365 (479)
T ss_pred             HHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcChHH-HHHhHHHHHHHHHHHHH--HH---hcCc-ccHH
Confidence            3355555558887777777777888888999999999999999877 55677777776554431  01   0011 1111


Q ss_pred             hHHHHHHHHHHHHHHHHH-HhhhhhhhhhccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchHHHHHH
Q 014600          126 TISYCVFAAIFNVGWAAT-QVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYRW  204 (422)
Q Consensus       126 ~~~~~~~~~l~~~~~~~~-~~p~~al~~~~t~~~~eR~~l~~~~~~~~~ig~~l~~~~~~~l~~~~~~~g~~~~~~~~~~  204 (422)
                       ...  ...++..++... .....++.+|..+ +++|++..++......+|.++++.+.+.+... +.   -.+..++.+
T Consensus       366 -~~~--~~~~~~~~~~~~~~~~~~~~~~e~~p-~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~-~~---~~~~~~~~~  437 (479)
T PRK10077        366 -ALL--SMLFYVAAFAMSWGPVCWVLLSEIFP-NAIRGKALAIAVAAQWIANYFVSWTFPMMDKN-SW---LVAHFHNGF  437 (479)
T ss_pred             -HHH--HHHHHHHHHhccccchhHHHhHhhCC-hhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhc-cc---hhhhccCcc
Confidence             111  112334444332 2335788888875 67899999999888888888877665333210 00   001234555


Q ss_pred             HHHHHHHHHHHHHhhhhccccCcc
Q 014600          205 IAYSSIFIGCCFVGIFLSRTEEPR  228 (422)
Q Consensus       205 ~~~i~~~i~~i~~~i~~~~~~E~~  228 (422)
                      .+.+.+++++++.++.++..||++
T Consensus       438 ~~~~~~~~~~~~~~~~~~~~~e~~  461 (479)
T PRK10077        438 SYWIYGCMGVLAALFMWKFVPETK  461 (479)
T ss_pred             HHHHHHHHHHHHHHHHHhccccCC
Confidence            666666666666666666677754

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=98.70  E-value=2e-07  Score=94.26  Aligned_cols=167  Identities=16%  Similarity=-0.024  Sum_probs=104.5

Q ss_pred             HHHHHHHHHhCCChhHHHHHHHHHHHHhhhhhhhhhhhhcccCCchhHHHHHHHHHHHHHHHhhcCccCccccCCc--cc
Q 014600           45 TYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTS--TL  122 (422)
Q Consensus        45 ~~l~~f~t~~gls~~~~g~i~~i~~l~~ai~~p~~G~lsDr~Grrrp~ll~g~i~~~i~~~~lf~~~~p~~~~~~~--~~  122 (422)
                      .|.+.+..+.|.+....+....+..+...+..++.|+++||+|||++.. .+.+..++++..+.....+  ..+..  ..
T Consensus       305 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~--~~~~~~~~~  381 (481)
T TIGR00879       305 YYSPTIFENAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLL-IGAAGMAICLFVLGILGAS--FVTGSSKSS  381 (481)
T ss_pred             HHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHH-HHHHHHHHHHHHHHHHhhc--ccCCcccch
Confidence            4455555556999988899999999999999999999999999998854 5555555554443210001  01100  00


Q ss_pred             hhhhHHHHHHHHHHHHHHHHHH-hhhhhhhhhccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchHHH
Q 014600          123 KVETISYCVFAAIFNVGWAATQ-VAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQ  201 (422)
Q Consensus       123 ~~~~~~~~~~~~l~~~~~~~~~-~p~~al~~~~t~~~~eR~~l~~~~~~~~~ig~~l~~~~~~~l~~~~~~~g~~~~~~~  201 (422)
                      .+.   .+....++..+++... ....++..|..+ +++|++..+..+...++|+++++.+.+.+.+.          .+
T Consensus       382 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~~~~~~~~~~lg~~i~~~~~~~~~~~----------~~  447 (481)
T TIGR00879       382 GNV---AIVFILLFIAFFAMGWGPVPWVIVSEIFP-LSLRPKGISIAVAANWLANFIVGFLFPTMLES----------IG  447 (481)
T ss_pred             hHH---HHHHHHHHHHHHHccccCeehhhhhccCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------cC
Confidence            111   1111123333333222 333455677765 67899999999888899888877666555432          25


Q ss_pred             HHHHHHHHHHHHHHHHhhhhccccCcc
Q 014600          202 YRWIAYSSIFIGCCFVGIFLSRTEEPR  228 (422)
Q Consensus       202 ~~~~~~i~~~i~~i~~~i~~~~~~E~~  228 (422)
                      |.+.+.+.++++++..++.++..||++
T Consensus       448 ~~~~f~~~~~~~~~~~i~~~~~~~~~~  474 (481)
T TIGR00879       448 VGGVFIFFGGLNVLGLIFVYFFLPETK  474 (481)
T ss_pred             ccceehhHHHHHHHHHHHHheecccCC
Confidence            666666666777776666666667754

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=98.68  E-value=2.3e-06  Score=88.62  Aligned_cols=145  Identities=15%  Similarity=0.050  Sum_probs=107.4

Q ss_pred             hHHHHHHHHHHHHhhhhhhhhhhhhcccCCchhHHHHHHHHHHHHHHHhhcCccCccccCCccchhhhHHHHHHHHHHHH
Q 014600           59 RGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNV  138 (422)
Q Consensus        59 ~~~g~i~~i~~l~~ai~~p~~G~lsDr~Grrrp~ll~g~i~~~i~~~~lf~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~  138 (422)
                      ...+++.++..+..++..++.|+++||+|||+. ++.+.++..++..+...       +++      ...+.+.+++.++
T Consensus        89 ~~~s~~~s~~~lga~~g~l~~g~l~d~~GRk~~-l~~~~~~~~iG~ii~~~-------a~~------~~~l~~GR~l~G~  154 (513)
T KOG0254|consen   89 VRQGLLTSILNLGALVGSLLAGRLGDRIGRKKT-LLLAVVLFLIGAIIIAL-------APS------WYQLIVGRILTGL  154 (513)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH-HHHHHHHHHHHHHHHHH-------hhh------HHHHHHHHHHhcc
Confidence            455899999999999999999999999999988 55678888887766542       221      1234445568899


Q ss_pred             HHHHHHhhhhhhhhhccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchHHHHHHHHHHHHHHHHHHHh
Q 014600          139 GWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVG  218 (422)
Q Consensus       139 ~~~~~~~p~~al~~~~t~~~~eR~~l~~~~~~~~~ig~~l~~~~~~~l~~~~~~~g~~~~~~~~~~~~~i~~~i~~i~~~  218 (422)
                      +.+........+.+|+.+ ++.|+.+.+.-+....+|.+++..++.. ..        +...+||....+..+.+++..+
T Consensus       155 g~G~~~~~~piy~sEiap-~~~RG~l~~~~~l~~~~Gi~~~~~~~~~-~~--------~~~~~Wr~~~~~~~i~~~~~~~  224 (513)
T KOG0254|consen  155 GVGGASVLAPVYISEIAP-AHIRGTLVSLYQLFITIGILLGYCINYG-TS--------KVYAGWRIPLGLALIPAVILAL  224 (513)
T ss_pred             chhhhhhcchhhHhhcCC-hhhhHHHHHHHHHHHHHHHHHHHHHhhh-hc--------cCCccHHHHHHHHHHHHHHHHH
Confidence            999988888999999986 6799999999988888877776433321 11        0014899887777777776665


Q ss_pred             hhhccccCcc
Q 014600          219 IFLSRTEEPR  228 (422)
Q Consensus       219 i~~~~~~E~~  228 (422)
                      . .++.+|.|
T Consensus       225 ~-~~~~pesp  233 (513)
T KOG0254|consen  225 G-MLFLPESP  233 (513)
T ss_pred             H-HHhCCCCh
Confidence            5 77777764

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=98.68  E-value=9.9e-08  Score=97.24  Aligned_cols=139  Identities=9%  Similarity=0.003  Sum_probs=93.3

Q ss_pred             HHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHhhhhhhhhhhhhccc--CCchhHHH-HHHHHHHHHHHHhhcCcc
Q 014600           36 NDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRF--GHFKIWHG-AGSVLVAVSFSSVFGGCM  112 (422)
Q Consensus        36 ~~~~~~~~~~~l~~f~t~~gls~~~~g~i~~i~~l~~ai~~p~~G~lsDr~--Grrrp~ll-~g~i~~~i~~~~lf~~~~  112 (422)
                      ..........+++.|.++.|.+..++|.++++..+...+..|+.|+++||.  ++||..++ .+.+..+++..++.    
T Consensus       253 ~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~~----  328 (455)
T TIGR00892       253 MFLGFFAPIIFLVPYAKDKGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLCA----  328 (455)
T ss_pred             HHHHccchHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHH----
Confidence            333334445678888877799999999999999999999999999999973  33333222 22222222222211    


Q ss_pred             CccccCCccchhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014600          113 PCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFS  188 (422)
Q Consensus       113 p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~al~~~~t~~~~eR~~l~~~~~~~~~ig~~l~~~~~~~l~~  188 (422)
                         ..+  +.+ .   +.+...+++++++....+..++..+..+ +++|++..+..+....+|+.+++.+.+.+.+
T Consensus       329 ---~~~--~~~-~---~~i~~~~~G~~~g~~~~~~~~~~~~~~~-~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~  394 (455)
T TIGR00892       329 ---LAG--DYT-G---LVIYCIFFGLSFGSVGALLFEVLMDLVG-AQRFSSAVGLVTIVECCAVLIGPPLAGRLVD  394 (455)
T ss_pred             ---Hhc--hHH-H---HHHHHHHHHHHhchHHHHHHHHHHHHhh-HHHHhhHHhHHHHHHHHHHHccccceeeeeh
Confidence               011  122 1   1222346778888777788888888875 5789999999888888888888766665554

>PRK15075 citrate-proton symporter; Provisional

Probab=98.67  E-value=1.2e-06  Score=88.66  Aligned_cols=139  Identities=12%  Similarity=0.038  Sum_probs=83.5

Q ss_pred             HHHHHHHHHHHHHHHh-CCChhHHHHHHHHHHHHhhhhhhhhhhhhcccCCchhHHHHHHHHHHHHHHHhhcCccCcccc
Q 014600           39 TAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRIL  117 (422)
Q Consensus        39 ~~~~~~~~l~~f~t~~-gls~~~~g~i~~i~~l~~ai~~p~~G~lsDr~Grrrp~ll~g~i~~~i~~~~lf~~~~p~~~~  117 (422)
                      .+.....|+|.|+++. |++..+.+++..+..+...+..++.|+++||+||||..+..+..........+..  .+    
T Consensus       253 ~~~~~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~--~~----  326 (434)
T PRK15075        253 SFYLITVYTPTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALSDRIGRRPVLIAFTVLAILTAYPALSW--LV----  326 (434)
T ss_pred             HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHH--HH----
Confidence            3445567899999987 9999999999888889999999999999999999988554322222222111111  01    


Q ss_pred             CCccchhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCccchhhHHHHHH-HHHHHHHHHHHHHHHHHHh
Q 014600          118 STSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRN-AFTMVANLSLYAIAFIVFS  188 (422)
Q Consensus       118 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~al~~~~t~~~~eR~~l~~~~~-~~~~ig~~l~~~~~~~l~~  188 (422)
                      ...+.. .   ......+.+++++....+..++..|..+ +++|+...++.. .+..+++.+++.+.+.+.+
T Consensus       327 ~~~~~~-~---~~~~~~~~~~~~g~~~~~~~~~~~e~~p-~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i~~  393 (434)
T PRK15075        327 AAPSFA-R---MLAVELWLSFLYGSYNGAMVVALTEVMP-AEVRTAGFSLAYSLATAIFGGFTPAISTWLIH  393 (434)
T ss_pred             cCCchH-H---HHHHHHHHHHHHHHHHhhHHHHHHHHCC-CCccchheeHHHHHHHHHHhhhHHHHHHHHHH
Confidence            111111 1   1111123345555555556677888876 578988877643 3333334445544444444

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=98.66  E-value=5.8e-07  Score=88.23  Aligned_cols=159  Identities=15%  Similarity=0.129  Sum_probs=109.1

Q ss_pred             HHHHHHHHHHHHHHHh-CCChhHHHHHHHHHHHHhhhhhhhhhhhhcccCCchhHHHHHHHHHHHHHHHhhcCccCcccc
Q 014600           39 TAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRIL  117 (422)
Q Consensus        39 ~~~~~~~~l~~f~t~~-gls~~~~g~i~~i~~l~~ai~~p~~G~lsDr~Grrrp~ll~g~i~~~i~~~~lf~~~~p~~~~  117 (422)
                      ......+|+-+|++|+ |+|...+++++.+..+...+.+.+.|++.|| +.||. +.....+.++....+..  .+    
T Consensus       226 g~F~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~~~-l~~~~~l~a~~~l~l~~--~~----  297 (394)
T COG2814         226 GHFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR-GPRRA-LIAALLLLALALLALTF--TG----  297 (394)
T ss_pred             chhhhHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc-cchhH-HHHHHHHHHHHHHHHHH--hc----
Confidence            3345568999999999 9999999999999999999999999999999 77766 44444555555444331  11    


Q ss_pred             CCccchhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCc
Q 014600          118 STSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHAD  197 (422)
Q Consensus       118 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~al~~~~t~~~~eR~~l~~~~~~~~~ig~~l~~~~~~~l~~~~~~~g~~~  197 (422)
                        .+.+.. ...   ..+++...+.....+....++.  .||.++...+......++|..++..+++.+++.        
T Consensus       298 --~~~~~~-~~~---~~~wg~a~~~~~~~~~~~~a~~--~p~~~~~a~sl~~aa~nlgia~GA~lGG~v~~~--------  361 (394)
T COG2814         298 --ASPALA-LAL---LFLWGFAFSPALQGLQTRLARL--APDAADLAGSLNVAAFNLGIALGAALGGLVLDA--------  361 (394)
T ss_pred             --chHHHH-HHH---HHHHHHHhhhhhhHHHHHhccc--CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------
Confidence              112111 111   1235555554444555555552  367899999999999999999999999888763        


Q ss_pred             hHHHHHHHHHHHHHHHHHHHhhhhcc
Q 014600          198 LENQYRWIAYSSIFIGCCFVGIFLSR  223 (422)
Q Consensus       198 ~~~~~~~~~~i~~~i~~i~~~i~~~~  223 (422)
                        .|+....++.+++.+++..+....
T Consensus       362 --~g~~~~~~~~a~l~~~a~~~~~~~  385 (394)
T COG2814         362 --LGYAATGWVGAALLLLALLLALLS  385 (394)
T ss_pred             --hchHHHHHHHHHHHHHHHHHHHHH
Confidence              366666666666666655555443

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=98.63  E-value=4.1e-07  Score=92.80  Aligned_cols=179  Identities=13%  Similarity=0.014  Sum_probs=102.5

Q ss_pred             eeeeccchhHHHHHHHHHHHHHHHHHHh-CCChhHHHHHHHHHHHHhhhhhhhhhhhhcccCCchhHH------HHHHHH
Q 014600           27 LYYGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWH------GAGSVL   99 (422)
Q Consensus        27 ~~y~~g~~~~~~~~~~~~~~l~~f~t~~-gls~~~~g~i~~i~~l~~ai~~p~~G~lsDr~Grrrp~l------l~g~i~   99 (422)
                      +......+..........+|+|.|+.+. |.+..+.|.+..+..+...+..++.|+++||+++||...      +...+.
T Consensus       264 ~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~  343 (465)
T TIGR00894       264 WAIWFAIFGHFWLYTILPTYLPTFISWVLRVSGKENGLLSSLPYLFAWLCSIFAGYLADFLKSSKTLSLTAARKIFNGIG  343 (465)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Confidence            3444555666666666778999999987 999999999999999999999999999999876543211      111111


Q ss_pred             HHHHHHHhhcCccCccccCCccchhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCccchhhHHHHHHHHHHHHHHHH
Q 014600          100 VAVSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSL  179 (422)
Q Consensus       100 ~~i~~~~lf~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~al~~~~t~~~~eR~~l~~~~~~~~~ig~~l~  179 (422)
                      .......++.  .+  .. ..+.. ..+..   ..+...+.+...........+..  ++.++...++.+..+.+|+.++
T Consensus       344 ~~~~~~~~~~--~~--~~-~~~~~-~~~~~---~~l~~~~~~~~~~~~~~~~~~~~--~~~~g~~~g~~~~~~~l~~~i~  412 (465)
T TIGR00894       344 GLGPGIFAYA--LP--YL-SAAFY-LTIII---LTLANAVSSGPLAGVLINSLDLA--PRFLGFIKGITGLPGFIGGLIA  412 (465)
T ss_pred             HHHHHHHHHH--HH--Hc-CCchH-HHHHH---HHHHHHHhhhhhhhhhhchhhcC--hhHHHHHHHHHHHHHHHHHHHH
Confidence            1110111110  01  00 01111 11111   11233333333444445555654  3467888888877777777766


Q ss_pred             HHHHHHHHhhccCCCCCchHHHHHHHHHHHHHHHHHHHhhhhcc
Q 014600          180 YAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSR  223 (422)
Q Consensus       180 ~~~~~~l~~~~~~~g~~~~~~~~~~~~~i~~~i~~i~~~i~~~~  223 (422)
                      +.+.+.+.+.       +...+|...+.+.+++.+++.++..+.
T Consensus       413 p~l~g~~~~~-------~~~~~~~~~f~~~~~~~~i~~i~~~~~  449 (465)
T TIGR00894       413 STLAGNILSQ-------DSKNVWLIVFLIMAFVNILCVIFYLIF  449 (465)
T ss_pred             HHhhheeeCC-------CCchHHHHHHHHHHHHHHHHHHHeeee
Confidence            5444333221       112358888888777777766555443

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=98.62  E-value=7.2e-07  Score=91.18  Aligned_cols=144  Identities=15%  Similarity=0.071  Sum_probs=102.2

Q ss_pred             hhHHHHHHHHHHHHHHHHHHh-CCChhHHHHHHHHHHHHhhhhhhhhhhhhcccCCchhHHHHHHHHHHHHHHHhhcCcc
Q 014600           34 MLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCM  112 (422)
Q Consensus        34 ~~~~~~~~~~~~~l~~f~t~~-gls~~~~g~i~~i~~l~~ai~~p~~G~lsDr~Grrrp~ll~g~i~~~i~~~~lf~~~~  112 (422)
                      +...........++|.|+++. |.++.+.|.++....+...+..|+.|++.||+|||+. +..+....+++..++...  
T Consensus       265 ~~~~~~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~-~~~g~~~~~~~~~~~~~~--  341 (485)
T TIGR00711       265 SLLGLGLYGSFYLLPLYLQQVLGYTALQAGLHILPVGLAPMLSSPIAGRMGDKIDPRKL-VTIGLILYAVGFYWRAFT--  341 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHH-HHHHHHHHHHHHHHHhcc--
Confidence            333444444556789999998 9999999999999999999999999999999999877 556777777666554311  


Q ss_pred             CccccCCccchhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014600          113 PCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFS  188 (422)
Q Consensus       113 p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~al~~~~t~~~~eR~~l~~~~~~~~~ig~~l~~~~~~~l~~  188 (422)
                         ..++.+.+..    ....++.+++.+....|......+..+ +++|++..+..+....+|+.++..+.+.+.+
T Consensus       342 ---~~~~~~~~~~----~~~~~l~g~g~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~g~~ig~~i~g~~~~  409 (485)
T TIGR00711       342 ---FTPDTPFLAI----ALPQFIRGFGMGCFFMPLTTIALSGLP-PHKIARGSSLSNFTRQLGGSIGTALITTILT  409 (485)
T ss_pred             ---CCCCCCHHHH----HHHHHHHHHHHHHHHHHHHHHHHhcCC-HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence               0112222211    111235777777777777776666654 6789999999888888888888777666554

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=98.61  E-value=5.1e-06  Score=81.80  Aligned_cols=223  Identities=13%  Similarity=0.056  Sum_probs=127.5

Q ss_pred             eeeeccchhHH---HHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHhhhhhhhhhhhhcccCCchhHHHHHHHHHHHH
Q 014600           27 LYYGSGHMLND---ITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVS  103 (422)
Q Consensus        27 ~~y~~g~~~~~---~~~~~~~~~l~~f~t~~gls~~~~g~i~~i~~l~~ai~~p~~G~lsDr~Grrrp~ll~g~i~~~i~  103 (422)
                      +.+++-.+.|.   +.+..++.|...||   | +...+-+..+++.++........-|+.||+|-|-. .+.++++.+++
T Consensus        48 l~~slL~~SN~~qWI~ya~i~n~~~~~Y---g-s~~~~~wlsmIym~v~vp~gf~~mw~ldk~GLR~a-~llgt~ln~iG  122 (480)
T KOG2563|consen   48 LAFSLLNFSNGMQWIQYAPINNYVNSFY---G-SSSAADWLSMIYMVVSVPFGFAAMWILDKFGLRTA-LLLGTVLNGIG  122 (480)
T ss_pred             HHHHHHHhcCcchheeehhHHHHHHHHh---c-chHHHHHHHHHHHHHHHHHhhHHHHhhcccchHHH-HHHHHHHHHHH
Confidence            44444444443   33334444444444   4 66677788888888888888889999999999888 55788888887


Q ss_pred             HHHhhcCccCccccCCccchhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCccchhhHHHHHHHHHHHHHHHHHHHH
Q 014600          104 FSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIA  183 (422)
Q Consensus       104 ~~~lf~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~al~~~~t~~~~eR~~l~~~~~~~~~ig~~l~~~~~  183 (422)
                      ..+=-.+..|  +.+  +..+..+.. .-..+-...+.++.. ..+-+++.-..++||..+.+...++..+|..++..++
T Consensus       123 a~Ir~iss~p--~v~--~~f~~~l~~-~Gq~iaa~Aq~Fim~-lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg~llp  196 (480)
T KOG2563|consen  123 AWIRLISSLP--FVP--PLFRRPLTH-TGQSIAAAAQPFILG-LPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGFLLP  196 (480)
T ss_pred             HHHhhhccCc--ccc--ccchhhhhH-HhHHHHHHhhhHhhc-cccHHHHhhCCcchhhhhhhHHHhcchHHHHHHhhcc
Confidence            6542211112  011  111111111 111233333333222 1223333334579999999999999899998888776


Q ss_pred             HHHHhhccCCCCCchHHHHHH--HHHHHHHHHHHHHhhhhccccCccccccc-----CCCcchhhhHHHHHHhHHHHHHH
Q 014600          184 FIVFSVSTAKTHADLENQYRW--IAYSSIFIGCCFVGIFLSRTEEPRLKMGL-----RGNSHARISWAYWFKKILYYQVA  256 (422)
Q Consensus       184 ~~l~~~~~~~g~~~~~~~~~~--~~~i~~~i~~i~~~i~~~~~~E~~~~~~~-----~~~~~~~~~~~~~~~n~~f~~~~  256 (422)
                      +.++..-    ..++...|..  +++....++.+...++.+..+|+|..++.     +.+.+..+++++.+||++|...+
T Consensus       197 pilV~~~----~~~~~~~~~~~~~f~~~~~l~~l~l~l~~~~~~~~P~tPps~s~~~~~~~~f~~si~~~~~n~~F~il~  272 (480)
T KOG2563|consen  197 PILVPSS----KDSEDNSWLFFTLFLGVECLAALLLALVLFVFTKKPPTPPSASQAALQDASFPKSIKSCFKNRQFIILA  272 (480)
T ss_pred             ceecCCC----CCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCchhHhhhhcCcHHHHHHHHHcCccHHHHH
Confidence            4444321    1122345544  34445555555545555555554432221     11245788899999999998877


Q ss_pred             HHHHHHHH
Q 014600          257 LVYMLTRL  264 (422)
Q Consensus       257 ~~~~~~~~  264 (422)
                      .+|-....
T Consensus       273 ~~ygi~~g  280 (480)
T KOG2563|consen  273 ICYGIGLG  280 (480)
T ss_pred             HHHhhhHH
Confidence            66655433

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=98.61  E-value=6.3e-06  Score=79.44  Aligned_cols=114  Identities=18%  Similarity=0.143  Sum_probs=78.0

Q ss_pred             CCceeeeeeeccchhHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHhhhhhhhhhhhhcccCCchhHHHHHHHHH
Q 014600           21 VGRWSVLYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLV  100 (422)
Q Consensus        21 l~~~~~~~y~~g~~~~~~~~~~~~~~l~~f~t~~gls~~~~g~i~~i~~l~~ai~~p~~G~lsDr~Grrrp~ll~g~i~~  100 (422)
                      +.++-...|.+...+.    -+-++|+-..|.+.|++..+++.++..+....++..|+.|.++||+||||..++. +++.
T Consensus        35 Fqr~yl~vY~La~~aD----WLQGpY~Y~LY~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~-cily  109 (354)
T PF05631_consen   35 FQRKYLLVYLLAMAAD----WLQGPYLYALYESYGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKACLLF-CILY  109 (354)
T ss_pred             HHHHHHHHHHHHHHHH----HhhcchhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHH-HHHH
Confidence            3333445666654333    3345666666665699999999999999999999999999999999999997654 5666


Q ss_pred             HHHHHHhhcCccCccccCCccchhhhHHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 014600          101 AVSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNC  153 (422)
Q Consensus       101 ~i~~~~lf~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~al~~~  153 (422)
                      +++....-        .++  ..    ..++-+++-+++.+....++.+++-.
T Consensus       110 ~~scl~k~--------~~~--~~----~L~~GRvlgGiaTSLLfS~FEsW~V~  148 (354)
T PF05631_consen  110 SLSCLTKH--------SSN--YP----VLLLGRVLGGIATSLLFSAFESWMVH  148 (354)
T ss_pred             HHHHHHHh--------ccc--cH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            66654322        111  11    12233456788888888788887543

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=98.61  E-value=1.1e-06  Score=87.95  Aligned_cols=134  Identities=9%  Similarity=0.007  Sum_probs=86.6

Q ss_pred             HHHHHHHHHHHHh-CCChhHHHHHHHHHHHHhhhhhhhhhhhhcccCCchhHHHHHHHHHHHHHHHhhcCccCccccCCc
Q 014600           42 CWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTS  120 (422)
Q Consensus        42 ~~~~~l~~f~t~~-gls~~~~g~i~~i~~l~~ai~~p~~G~lsDr~Grrrp~ll~g~i~~~i~~~~lf~~~~p~~~~~~~  120 (422)
                      .+..+.|.|+.+. |.++.+.|.......+...+..++.|+++||+||||. +..+.+..+++..++..  .|.  ....
T Consensus       233 ~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~~~~~~-~~~~~~~~~~g~~~~~~--~~~--~~~~  307 (406)
T PRK15402        233 AWIALSPVILISGEQLSSYEYGLLQVPVFGALIAGNLTLARLTSRRPLRSL-IRMGLWPMVAGLLLAAL--ATV--ISSH  307 (406)
T ss_pred             HHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHH-HHHHHHHHHHHHHHHHH--HHH--cccc
Confidence            3445568888887 9999999988877777788889999999999999887 55666666655544321  010  0011


Q ss_pred             cchhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCccchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 014600          121 TLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIV  186 (422)
Q Consensus       121 ~~~~~~~~~~~~~~l~~~~~~~~~~p~~al~~~~t~~~~eR~~l~~~~~~~~~ig~~l~~~~~~~l  186 (422)
                      +..+    ..+..++++.+.+....+..+.... .. +++|++..+..+....+|..+++.+...+
T Consensus       308 ~~~~----~~~~~~~~g~g~~~~~~~~~~~~~~-~~-~~~~g~~~~~~~~~~~~~~~~g~~~~~~l  367 (406)
T PRK15402        308 AYLW----LTAGLSLYAFGIGLANAGLYRLTLF-SS-DVSKGTVSAAMGMLSMLIFTVGIELSKHA  367 (406)
T ss_pred             cHHH----HHHHHHHHHHHHHHHhhhHHHHHhh-hc-cccccHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            1111    1122235666666655555444432 23 47899999998888888877766555444

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=98.61  E-value=4.8e-07  Score=91.45  Aligned_cols=64  Identities=11%  Similarity=0.157  Sum_probs=44.3

Q ss_pred             HHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHhhhhhhhhhhhhcccCCchhHHHHHHHHHHHHHH
Q 014600           40 AACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFS  105 (422)
Q Consensus        40 ~~~~~~~l~~f~t~~gls~~~~g~i~~i~~l~~ai~~p~~G~lsDr~Grrrp~ll~g~i~~~i~~~  105 (422)
                      +.....++|+|+++. .+...+.....+..+..++..|+.|+++||+|+||. +.++.+...+...
T Consensus       268 fvg~s~~lp~~~~~~-~~~~~~l~~~~l~~l~~~l~rplgG~LADRiG~~~v-l~~~~i~~~i~~~  331 (462)
T PRK15034        268 FIGFSAGFAMLAKTQ-FPDVNILRLAFFGPFIGAIARSVGGAISDKFGGVRV-TLINFIFMAIFSA  331 (462)
T ss_pred             HHHHHHHHHHHHHHH-cChHHHHHHHHHHHHHHHHHHHhhHHHHHhcCchHH-HHHHHHHHHHHHH
Confidence            333455788887774 444444444556788999999999999999999987 4455555555543

>TIGR00896 CynX cyanate transporter

Probab=98.60  E-value=1e-06  Score=86.48  Aligned_cols=139  Identities=12%  Similarity=0.106  Sum_probs=95.0

Q ss_pred             HHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHhhhhhhhhhhhhcccCCchhHHHHHHHHHHHHHHHhhcCccCccc
Q 014600           37 DITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRI  116 (422)
Q Consensus        37 ~~~~~~~~~~l~~f~t~~gls~~~~g~i~~i~~l~~ai~~p~~G~lsDr~Grrrp~ll~g~i~~~i~~~~lf~~~~p~~~  116 (422)
                      ...+.....++|.|+++.|.++.+.|.+.++..+...+..++.|+++||+|+||..+..+....+++...+..  .|   
T Consensus       210 ~~~~~~~~~~lp~~~~~~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~--~~---  284 (355)
T TIGR00896       210 SGLYYSLIGWLPAILISHGASAATAGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVGLCGLLF--AP---  284 (355)
T ss_pred             HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHH--hh---
Confidence            3344455678898988779999999999999999999999999999999976665566666666666544332  11   


Q ss_pred             cCCccchhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 014600          117 LSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSV  189 (422)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~al~~~~t~~~~eR~~l~~~~~~~~~ig~~l~~~~~~~l~~~  189 (422)
                        +.  . ... +   .++++++++.......+...+..+++++++...++.+....++..+++.+.+.+.+.
T Consensus       285 --~~--~-~~~-~---~~l~g~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~~~  348 (355)
T TIGR00896       285 --MH--G-LWA-W---ALVLGLGQGGAFPLALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGVLHDI  348 (355)
T ss_pred             --hh--H-HHH-H---HHHHHHhhhhHhHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              11  1 111 1   235677776655555555555555566778888877777777777777666666554

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>TIGR01272 gluP glucose/galactose transporter

Probab=98.60  E-value=2.3e-05  Score=75.72  Aligned_cols=159  Identities=10%  Similarity=-0.055  Sum_probs=96.3

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhhhhhhccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCC-----CCC-chHH
Q 014600          127 ISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAK-----THA-DLEN  200 (422)
Q Consensus       127 ~~~~~~~~l~~~~~~~~~~p~~al~~~~t~~~~eR~~l~~~~~~~~~ig~~l~~~~~~~l~~~~~~~-----g~~-~~~~  200 (422)
                      ..+++...+.+.+.++.++..+++++++.+ +|+|++-.++.+.+..+|.++++.+...++......     +.. ....
T Consensus        11 ~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~-~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~~~~~~~~~   89 (310)
T TIGR01272        11 VLFLGALFVLASGLTILQVAANPYVSILGP-IETAASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQVATANAEAA   89 (310)
T ss_pred             HHHHHHHHHHHhhHHHHHhhHHHHHHHHCC-cchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhhhhhhHHHH
Confidence            344444456888899999999999999975 567888888889999999999988887666421100     000 0124


Q ss_pred             HHHHHHHHHHHHHHHHH-hhhhccccCcccccccCCCcchhhhHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHhhh
Q 014600          201 QYRWIAYSSIFIGCCFV-GIFLSRTEEPRLKMGLRGNSHARISWAYWFKKILYYQVALVYMLTRLVVNVSQAYLAFYVIN  279 (422)
Q Consensus       201 ~~~~~~~i~~~i~~i~~-~i~~~~~~E~~~~~~~~~~~~~~~~~~~~~~n~~f~~~~~~~~~~~~~~~~~~~y~~~y~~~  279 (422)
                      .|++...+.+.+..+.. +..+...+|.+.++++++..+.....+..+|+|.++...+..++......+...|++.|+.+
T Consensus        90 ~~~~~yl~ia~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~f~yvg~e~~~~~w~~~yl~~  169 (310)
T TIGR01272        90 KVHTPYLLLAGALAVLAIIFAFLPLPELQEADVARVSSGDTTQKTSAFQFTHLVLGALGIFVYVGAEVSAGSFLVNFLSD  169 (310)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHccCCCCCcccccccccccccchhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            67777775554433333 22233344432221111110111122457788887766555555555667888999999975


Q ss_pred             c--cCccch
Q 014600          280 D--LRMGQS  286 (422)
Q Consensus       280 ~--~~l~~~  286 (422)
                      .  .++++.
T Consensus       170 ~~~~g~s~~  178 (310)
T TIGR01272       170 PHALGLPED  178 (310)
T ss_pred             cccCCCCHH
Confidence            4  466543

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>PRK03893 putative sialic acid transporter; Provisional

Probab=98.59  E-value=7.9e-07  Score=91.33  Aligned_cols=132  Identities=11%  Similarity=0.044  Sum_probs=87.3

Q ss_pred             HHHHHHHHHHh-CCChhHHHHHHHHHHHHhhhhhhhhhhhhcccCCchhHHHHHHHHHHHHHHHhhcCccCccccCCccc
Q 014600           44 FTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTL  122 (422)
Q Consensus        44 ~~~l~~f~t~~-gls~~~~g~i~~i~~l~~ai~~p~~G~lsDr~Grrrp~ll~g~i~~~i~~~~lf~~~~p~~~~~~~~~  122 (422)
                      ..++|.|+++. |.++.++|.+.+...+...+..++.|+++||+||||.++ .+.....+....+..       ......
T Consensus       295 ~~~lp~~l~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~-~~~~~~~~~~~~~~~-------~~~~~~  366 (496)
T PRK03893        295 QALLPTYLKTDLGYDPHTVANVLFFSGFGAAVGCCVGGFLGDWLGTRKAYV-CSLLISQLLIIPVFA-------IGGANV  366 (496)
T ss_pred             HHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHH-HHHHHHHHHHHHHhh-------ccccHH
Confidence            45788899766 999999999999999999999999999999999998854 444444444332221       011111


Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014600          123 KVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFS  188 (422)
Q Consensus       123 ~~~~~~~~~~~~l~~~~~~~~~~p~~al~~~~t~~~~eR~~l~~~~~~~~~ig~~l~~~~~~~l~~  188 (422)
                      + .  ... ...+.+...........++..+..+ +++|++..++.+....+|+.+++.+.+.+.+
T Consensus       367 ~-~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~g~~lgp~l~g~l~~  427 (496)
T PRK03893        367 W-V--LGL-LLFFQQMLGQGISGLLPKLIGGYFD-TEQRAAGLGFTYNVGALGGALAPILGALIAQ  427 (496)
T ss_pred             H-H--HHH-HHHHHHHHhcccchhhHHHHHhhCC-HHHhhcccchhhhhhhHHHHHHHHHHHHHhc
Confidence            1 1  111 1111222222233455667778775 5789999998888888888888777665554

>PRK10091 MFS transport protein AraJ; Provisional

Probab=98.58  E-value=9.8e-07  Score=87.65  Aligned_cols=131  Identities=13%  Similarity=0.154  Sum_probs=80.2

Q ss_pred             HHHHHHHHHHHh-CCChhHHHHHHHHHHHHhhhhhhhhhhhhcccCCchhHHHHHHHHHHHHHHHhhcCccCccccCCcc
Q 014600           43 WFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTST  121 (422)
Q Consensus        43 ~~~~l~~f~t~~-gls~~~~g~i~~i~~l~~ai~~p~~G~lsDr~Grrrp~ll~g~i~~~i~~~~lf~~~~p~~~~~~~~  121 (422)
                      +.+|+++|+.+. |.++.+.+.+..+..+...+..++.|+++||+||||. +..+....+++..++..   .   . + +
T Consensus       218 ~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~~~~~~-~~~~~~~~~i~~~~~~~---~---~-~-~  288 (382)
T PRK10091        218 WFSYIKPYMMFISGFSETSMTFIMMLVGLGMVLGNLLSGRLSGRYSPLRI-AAVTDFIIVLALLMLFF---F---G-G-M  288 (382)
T ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHHheeccccCchhH-HHHHHHHHHHHHHHHHH---H---H-h-h
Confidence            446778888887 9999999999999999999999999999999999877 44566666665544321   0   1 1 1


Q ss_pred             chhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014600          122 LKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFS  188 (422)
Q Consensus       122 ~~~~~~~~~~~~~l~~~~~~~~~~p~~al~~~~t~~~~eR~~l~~~~~~~~~ig~~l~~~~~~~l~~  188 (422)
                      .+ ..   .+...+.+.++.....|......+...++++++...  .+....+|..+++.+.+.+.+
T Consensus       289 ~~-~~---~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~g~~~Gp~~~G~l~~  349 (382)
T PRK10091        289 KT-AS---LIFAFICCAGLFALSAPLQILLLQNAKGGELLGAAG--GQIAFNLGSAIGAYCGGMMLT  349 (382)
T ss_pred             HH-HH---HHHHHHHHHHHHhhhHHHHHHHHHhCCcchHHHHHH--HHHHHHHHHHHHHHHhHHHHH
Confidence            11 11   111123344443333443333333333334444432  244567777777777666655

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=98.58  E-value=1.4e-06  Score=86.67  Aligned_cols=166  Identities=15%  Similarity=0.063  Sum_probs=101.3

Q ss_pred             hhHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHh-hhhhhhhhhhhcccCCchhHHHHHHHHHHHHHHHhhcCcc
Q 014600           34 MLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIAD-GFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCM  112 (422)
Q Consensus        34 ~~~~~~~~~~~~~l~~f~t~~gls~~~~g~i~~i~~l~~-ai~~p~~G~lsDr~Grrrp~ll~g~i~~~i~~~~lf~~~~  112 (422)
                      +..........++.+.|+.|.|.++.++|.+..+..+.. .+...+.|++.||+|+||... .+....++.....+.  .
T Consensus       218 ~l~~~~~~~~~~~~~~~l~~~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~-~~~~~~~~~~~~~~~--~  294 (390)
T TIGR02718       218 LLSAMTAVSGFGLSKLYLVDAGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFI-LGVGLAGSLALLWFA--Q  294 (390)
T ss_pred             HHHHHHHHHHHHHhhHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHH-HHHHHHHHHHHHHHH--H
Confidence            344444455567888899888999999999998876544 455789999999999988744 444443222222110  0


Q ss_pred             CccccCCccchhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 014600          113 PCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTA  192 (422)
Q Consensus       113 p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~al~~~~t~~~~eR~~l~~~~~~~~~ig~~l~~~~~~~l~~~~~~  192 (422)
                      ...+. .....   ..+. ...+.+++.+....+..+...+..+++++|++..+..+...++|..+++.+.+.+.+.   
T Consensus       295 ~~~~~-~~~~~---~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~---  366 (390)
T TIGR02718       295 AAFWL-APGIA---VAWS-CSAFGSLITGITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLTDR---  366 (390)
T ss_pred             HHccc-CCcHH---HHHH-HHHHHHHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence            00000 00111   1111 1123345556666666677666665457889988888888899998888887776653   


Q ss_pred             CCCCchHHHHHHHHHHHHHHHHHHH
Q 014600          193 KTHADLENQYRWIAYSSIFIGCCFV  217 (422)
Q Consensus       193 ~g~~~~~~~~~~~~~i~~~i~~i~~  217 (422)
                             .||+..+.+.+.+.++..
T Consensus       367 -------~G~~~~f~~~~~~~l~a~  384 (390)
T TIGR02718       367 -------FGYAGGFLSGTVLAVLAI  384 (390)
T ss_pred             -------HccHHHHHHHHHHHHHHH
Confidence                   245555555544444433

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>PF13347 MFS_2: MFS/sugar transport protein

Probab=98.58  E-value=7.7e-07  Score=89.87  Aligned_cols=153  Identities=18%  Similarity=0.169  Sum_probs=110.9

Q ss_pred             eeeeeeccchhHHHHHHHHHHHHHHHHHHh-CCChhHHHHHHHHHHHHhhhhhhhhhhhhcccCCchhHHHHHHHHHHHH
Q 014600           25 SVLYYGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVS  103 (422)
Q Consensus        25 ~~~~y~~g~~~~~~~~~~~~~~l~~f~t~~-gls~~~~g~i~~i~~l~~ai~~p~~G~lsDr~Grrrp~ll~g~i~~~i~  103 (422)
                      ....+-...+...+...+.+++.++|.+++ |.+ ...+.+..+..+...+..|++++++||+||||.++ .+....+++
T Consensus       226 ~~~~l~~~~~~~~~~~~~~~~~~~y~~~~vl~~~-~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~-~~~~~~~~~  303 (428)
T PF13347_consen  226 PFRILLLAFFLQWLAFALMNTFLPYYFTYVLGNE-GLISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYI-IGLLLAALG  303 (428)
T ss_pred             hHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhcCc-hhhHHHHHHHHHHHHHHHHHHHHHHHHccceeehh-hhHHHHHHH
Confidence            334455556666777777778888899987 777 66788888889999999999999999999999855 567777776


Q ss_pred             HHHhhcCccCccccCCccchhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCccc------hhhHHHHHHHHHHHHHH
Q 014600          104 FSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTS------RVVLTSCRNAFTMVANL  177 (422)
Q Consensus       104 ~~~lf~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~al~~~~t~~~~e------R~~l~~~~~~~~~ig~~  177 (422)
                      ...++.  .|     ..+.++    +.+..++.+++++.......++.+|..+.+++      .+...+..+....++..
T Consensus       304 ~~~~~~--~~-----~~~~~~----~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~  372 (428)
T PF13347_consen  304 FLLLFF--LG-----PGSPWL----VLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQG  372 (428)
T ss_pred             HHHHHH--HH-----hhhHHH----HHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHH
Confidence            665543  12     112221    22333468888888888889999999864322      25678888888888888


Q ss_pred             HHHHHHHHHHhhc
Q 014600          178 SLYAIAFIVFSVS  190 (422)
Q Consensus       178 l~~~~~~~l~~~~  190 (422)
                      ++..+.+.+++..
T Consensus       373 la~~i~g~~l~~~  385 (428)
T PF13347_consen  373 LAGAIVGLLLALV  385 (428)
T ss_pred             HHHHHHHHHHHHh
Confidence            8887777777654

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=98.57  E-value=8e-07  Score=89.61  Aligned_cols=145  Identities=12%  Similarity=0.128  Sum_probs=96.6

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHh-CCChhHHHHHHHHHHHHhhhhhhhhhhhhcccCCchhHHHHHHHHHHHHHHHhhcC
Q 014600           32 GHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGG  110 (422)
Q Consensus        32 g~~~~~~~~~~~~~~l~~f~t~~-gls~~~~g~i~~i~~l~~ai~~p~~G~lsDr~Grrrp~ll~g~i~~~i~~~~lf~~  110 (422)
                      ..+...........+.++|.++. | ++...+.+..+..+...+..|+.|+++||+||||.+ ..+....+++...++. 
T Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~-~~~~~~~~~~~~~~~~-  306 (437)
T TIGR00792       230 AYLFYNLAFNIKNGVQVYYFTYVLG-DPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILF-AGGILLMVLGYLIFFF-  306 (437)
T ss_pred             HHHHHHHHHHHHcchhheeEeeecC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHH-HHHHHHHHHHHHHHHH-
Confidence            33334444444444444555555 6 566778888888889999999999999999999885 4566666666554432 


Q ss_pred             ccCccccCCccchhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhccCC------ccchhhHHHHHHHHHHHHHHHHHHHHH
Q 014600          111 CMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLN------STSRVVLTSCRNAFTMVANLSLYAIAF  184 (422)
Q Consensus       111 ~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~al~~~~t~~------~~eR~~l~~~~~~~~~ig~~l~~~~~~  184 (422)
                            .+ .+.+ .   ..+..++.+++.+..+....++.+|..+.      +++++...+..+....+|..+++.+.+
T Consensus       307 ------~~-~~~~-~---~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g  375 (437)
T TIGR00792       307 ------AG-SNLP-L---ILVLIILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVG  375 (437)
T ss_pred             ------cc-hhHH-H---HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence                  11 1111 1   12222356777777777888888887641      344678888888888999988888887


Q ss_pred             HHHhhc
Q 014600          185 IVFSVS  190 (422)
Q Consensus       185 ~l~~~~  190 (422)
                      .+++..
T Consensus       376 ~ll~~~  381 (437)
T TIGR00792       376 LILGII  381 (437)
T ss_pred             HHHHHc
Confidence            777654

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=98.56  E-value=3.7e-06  Score=85.00  Aligned_cols=126  Identities=13%  Similarity=0.087  Sum_probs=78.4

Q ss_pred             HHHHHHHHHHHHHHHHHh-CCChhHHHHHHHHHHHHhhhhhhhhhhhhcccCCchhHHHHHHHHHHHHHHHhhcCccCcc
Q 014600           37 DITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCR  115 (422)
Q Consensus        37 ~~~~~~~~~~l~~f~t~~-gls~~~~g~i~~i~~l~~ai~~p~~G~lsDr~Grrrp~ll~g~i~~~i~~~~lf~~~~p~~  115 (422)
                      ...+....+|+|.|+.+. |.+..+.+....+..+...+..++.|+++||+||||..+ .+.+..++....++. ..+  
T Consensus       256 ~~~~~~~~~~lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~grr~~~~-~~~~~~~~~~~~~~~-~~~--  331 (432)
T PRK10406        256 SLCFYTFTTYMQKYLVNTAGMHANVASGIMTAALFVFMLIQPLIGALSDKIGRRTSML-CFGSLAALFTVPILS-ALQ--  331 (432)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHH-HHHHHHHHHHHHHHH-HHH--
Confidence            344445667899999887 999999999999988888999999999999999998754 343333322221110 000  


Q ss_pred             ccCCccchhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCccchhhHHHHHHHHHH
Q 014600          116 ILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTM  173 (422)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~al~~~~t~~~~eR~~l~~~~~~~~~  173 (422)
                        ...+.. .....+   .+.....+....+..++.+|+.+ ++.|+...++.+..++
T Consensus       332 --~~~~~~-~~~~~~---~~~~~~~~~~~~~~~~~~~e~fp-~~~r~t~~g~~~~~g~  382 (432)
T PRK10406        332 --NVSSPY-AAFGLV---MCALLIVSFYTSISGILKAEMFP-AQVRALGVGLSYAVAN  382 (432)
T ss_pred             --cCCcHH-HHHHHH---HHHHHHHHHHHHHHHHHHHHHCC-CCccchhhhHHHHHHH
Confidence              011111 111111   11222233333456678899987 5789999998765544

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=98.56  E-value=1.3e-06  Score=90.10  Aligned_cols=136  Identities=20%  Similarity=0.161  Sum_probs=98.8

Q ss_pred             HHHHHHHHHHHHHh-CCChhHHHHHHHHHHHHhhhhhhhhhhhhcccCCchhHHHHHHHHHHHHHHHhhcCccCccccCC
Q 014600           41 ACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILST  119 (422)
Q Consensus        41 ~~~~~~l~~f~t~~-gls~~~~g~i~~i~~l~~ai~~p~~G~lsDr~Grrrp~ll~g~i~~~i~~~~lf~~~~p~~~~~~  119 (422)
                      .....|++.|++++ |.++.++|..+....+...+..|+.|+++||+|||+. +..+.+..+++..++..  ..    .+
T Consensus       276 ~~~~~~~~~~lq~v~g~s~~~ag~~~~~~~~~~~~~~~~~g~l~~r~g~~~~-~~~g~~~~~~~~~~l~~--~~----~~  348 (495)
T PRK14995        276 VGFELLMAQELQFVHGLSPLEAGMFMLPVMVASGFSGPIAGILVSRLGLRLV-ATGGMALSALSFYGLAM--TD----FS  348 (495)
T ss_pred             HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHH-HHHHHHHHHHHHHHHHH--hc----CC
Confidence            33446788899998 9999999999999999999999999999999998765 66677776666554321  01    11


Q ss_pred             ccchhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014600          120 STLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFS  188 (422)
Q Consensus       120 ~~~~~~~~~~~~~~~l~~~~~~~~~~p~~al~~~~t~~~~eR~~l~~~~~~~~~ig~~l~~~~~~~l~~  188 (422)
                      .+.+ ...   ...++.+++.+....+......+..+ +++|+...+..+....+|+.++..+.+.+++
T Consensus       349 ~~~~-~~~---~~~~l~G~g~g~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~lG~~~G~ai~g~i~~  412 (495)
T PRK14995        349 TQQW-QAW---GLMALLGFSAASALLASTSAIMAAAP-PEKAAAAGAIETMAYELGAGLGIAIFGLLLS  412 (495)
T ss_pred             CchH-HHH---HHHHHHHHhHHHHHHHHHHHHHhcCC-HHhcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            1222 111   12246788888777777777777654 6789999998888888888887777666654

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=98.55  E-value=1.4e-06  Score=93.22  Aligned_cols=142  Identities=15%  Similarity=-0.005  Sum_probs=93.4

Q ss_pred             HHHHHHHHHHHHhhhhhhhhhhhhcccCCchhHHHHHHHHHHHHHHHhhcCccCccccCCccchhhhHHHHHHHHHHHHH
Q 014600           60 GAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVG  139 (422)
Q Consensus        60 ~~g~i~~i~~l~~ai~~p~~G~lsDr~Grrrp~ll~g~i~~~i~~~~lf~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~  139 (422)
                      ...+..++..+...+..++.|+++||+|||+. ++.+.++.+++..++..       .++  ....    +++.++++.+
T Consensus       596 ~~~~~~~l~~l~~i~G~il~g~L~Dr~GRr~~-l~~~~~lsai~~ll~~~-------~~s--~~~l----l~~~~l~g~~  661 (742)
T TIGR01299       596 MIYFVNFLGTLAVLPGNIVSALLMDKIGRLRM-LAGSMVLSCISCFFLSF-------GNS--ESAM----IALLCLFGGL  661 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH-HHHHHHHHHHHHHHHHH-------Hcc--HHHH----HHHHHHHHHH
Confidence            34566777788889999999999999999887 55677777766544321       111  1111    1112344555


Q ss_pred             HHHHHhhhhhhhhhccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchHHHHHHHHHHHHHHHHHHHhh
Q 014600          140 WAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGI  219 (422)
Q Consensus       140 ~~~~~~p~~al~~~~t~~~~eR~~l~~~~~~~~~ig~~l~~~~~~~l~~~~~~~g~~~~~~~~~~~~~i~~~i~~i~~~i  219 (422)
                      .+.......++.+|+.+ .++|++..++.+..+.+|+++++.+++.+...           +...++++.+++.+++.++
T Consensus       662 ~~~~~~~~~a~~aEl~P-t~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~~-----------~~~~pf~i~a~~lll~~ll  729 (742)
T TIGR01299       662 SIAAWNALDVLTVELYP-SDKRATAFGFLNALCKAAAVLGILIFGSFVGI-----------TKAAPILFASAALACGGLL  729 (742)
T ss_pred             HHHHHHHHHHHHHHHcC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----------hhHHHHHHHHHHHHHHHHH
Confidence            55555566788999987 57899999999999999999988777655432           2334555555555554444


Q ss_pred             hhccccCcc
Q 014600          220 FLSRTEEPR  228 (422)
Q Consensus       220 ~~~~~~E~~  228 (422)
                      .+ .+||.+
T Consensus       730 ~~-~LPET~  737 (742)
T TIGR01299       730 AL-KLPDTR  737 (742)
T ss_pred             HH-hCCCCc
Confidence            44 447753

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>PRK09848 glucuronide transporter; Provisional

Probab=98.54  E-value=1.4e-06  Score=88.51  Aligned_cols=150  Identities=12%  Similarity=0.054  Sum_probs=98.6

Q ss_pred             eeccchhHHHHHHHHHHHHHHHHHHh-CCChhHHHHHHHHHHHHhhhhhhhhhhhhcccCCchhHHHHHHHHHHHHHHHh
Q 014600           29 YGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSV  107 (422)
Q Consensus        29 y~~g~~~~~~~~~~~~~~l~~f~t~~-gls~~~~g~i~~i~~l~~ai~~p~~G~lsDr~Grrrp~ll~g~i~~~i~~~~l  107 (422)
                      +....+.............++|++++ |.++...++......+...+..|+.++++||+|+||.+ ..|.++.+++..++
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~-~~g~~~~~i~~~~~  311 (448)
T PRK09848        233 LCIGALCVLISTFAVSASSLFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKNTF-LIGALLGTCGYLLF  311 (448)
T ss_pred             HHHHHHHHHHHHHHHhhhheeeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHH-HHHHHHHHHHHHHH
Confidence            33444444444444555667777777 88776666555555666778899999999999998885 45777777766554


Q ss_pred             hcCccCccccCCccchhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCcc------chhhHHHHHHHHHHHHHHHHHH
Q 014600          108 FGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNST------SRVVLTSCRNAFTMVANLSLYA  181 (422)
Q Consensus       108 f~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~al~~~~t~~~~------eR~~l~~~~~~~~~ig~~l~~~  181 (422)
                      +.  .|     ..+.+ .   ..+...+.+++.+....+..++.+|..+..+      +++...+..+....+|..++..
T Consensus       312 ~~--~~-----~~~~~-~---~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~  380 (448)
T PRK09848        312 FW--VS-----VWSLP-V---ALVALAIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGS  380 (448)
T ss_pred             HH--cC-----chhHH-H---HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHH
Confidence            42  11     11222 1   1122245778888888888999998875321      2467778888888888888887


Q ss_pred             HHHHHHhhc
Q 014600          182 IAFIVFSVS  190 (422)
Q Consensus       182 ~~~~l~~~~  190 (422)
                      +.+.+++..
T Consensus       381 i~g~~l~~~  389 (448)
T PRK09848        381 IPAFILGLS  389 (448)
T ss_pred             HHHHHHHHc
Confidence            776666643

>TIGR00900 2A0121 H+ Antiporter protein

Probab=98.53  E-value=1.3e-06  Score=85.18  Aligned_cols=130  Identities=9%  Similarity=0.043  Sum_probs=97.6

Q ss_pred             HHHHHHHHHh-CCChhHHHHHHHHHHHHhhhhhhhhhhhhcccCCchhHHHHHHHHHHHHHHHhhcCccCccccCCccch
Q 014600           45 TYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLK  123 (422)
Q Consensus        45 ~~l~~f~t~~-gls~~~~g~i~~i~~l~~ai~~p~~G~lsDr~Grrrp~ll~g~i~~~i~~~~lf~~~~p~~~~~~~~~~  123 (422)
                      .+.|+|.++. |.++.+.|.+..+..+...+..++.|++.||+|||+.. ..+....+++...+..       .+. +.+
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~-------~~~-~~~  302 (365)
T TIGR00900       232 ALFPYVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYFKRMALM-TGAIFVIGLAILVVGL-------TPP-NFP  302 (365)
T ss_pred             HHhHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHH-HHHHHHHHHHHHHHHh-------hch-hHH
Confidence            6678888886 99999999999999999999999999999999998874 4455555555443321       111 111


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014600          124 VETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFS  188 (422)
Q Consensus       124 ~~~~~~~~~~~l~~~~~~~~~~p~~al~~~~t~~~~eR~~l~~~~~~~~~ig~~l~~~~~~~l~~  188 (422)
                          ...+..++.+++++....+..++..|..+ +++|++..+..+....++..+++.+.+.+.+
T Consensus       303 ----~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~g~~~~g~l~~  362 (365)
T TIGR00900       303 ----LFLVLWFAIGVGYGPINVPQGTLLQRRVP-AELLGRVFGAQFSLSHAAWPLGLILAGPLAD  362 (365)
T ss_pred             ----HHHHHHHHHHHHHHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                12222346778888888888899999876 6889999999999999998888877766654

>TIGR00891 2A0112 putative sialic acid transporter

Probab=98.53  E-value=1.9e-06  Score=85.54  Aligned_cols=134  Identities=13%  Similarity=0.032  Sum_probs=91.2

Q ss_pred             HHHHHHHHHHHHh-CCChhHHHHHHHHHHHHhhhhhhhhhhhhcccCCchhHHHHHHHHHHHHHHHhhcCccCccccCCc
Q 014600           42 CWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTS  120 (422)
Q Consensus        42 ~~~~~l~~f~t~~-gls~~~~g~i~~i~~l~~ai~~p~~G~lsDr~Grrrp~ll~g~i~~~i~~~~lf~~~~p~~~~~~~  120 (422)
                      ....+++.|+++. |.++.+.+.+.....+...+..++.|+++||+||||... .+.+...+....++.       . ..
T Consensus       256 ~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~-~~~~~~~~~~~~~~~-------~-~~  326 (405)
T TIGR00891       256 PIQDLLPTYLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWLGRRKAYV-CSLLAGQLLIIPVFA-------I-GA  326 (405)
T ss_pred             hhhhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhhhH-HHHHHHHHHHHHHHH-------h-CC
Confidence            4446778888887 999999999999999999999999999999999998844 444443333222221       0 11


Q ss_pred             cchhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 014600          121 TLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSV  189 (422)
Q Consensus       121 ~~~~~~~~~~~~~~l~~~~~~~~~~p~~al~~~~t~~~~eR~~l~~~~~~~~~ig~~l~~~~~~~l~~~  189 (422)
                      +.+..    .+...+.+.+.........++..|..+ +++|++..+..+....+|..+++.+.+.+.+.
T Consensus       327 ~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~  390 (405)
T TIGR00891       327 NVAVL----GLGLFFQQMLVQGIWGILPKHLGEYFP-TDQRAAGLGFTYQLGNLGGALAPIIGALLAQR  390 (405)
T ss_pred             chHHH----HHHHHHHHHHHccchhhHHHHHhhhCC-cchhHHHhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence            11111    111122333333444455677888875 67899999998888888888888777666553

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=98.51  E-value=1.4e-06  Score=88.37  Aligned_cols=168  Identities=8%  Similarity=-0.043  Sum_probs=97.1

Q ss_pred             HHHHHHHHHHHHHHHHh-CCChhHHHHHHHHHHHHhhhhhhhhhhhhcccCCchhHHHHHHHHHHHH--HHHhhcCccCc
Q 014600           38 ITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVS--FSSVFGGCMPC  114 (422)
Q Consensus        38 ~~~~~~~~~l~~f~t~~-gls~~~~g~i~~i~~l~~ai~~p~~G~lsDr~Grrrp~ll~g~i~~~i~--~~~lf~~~~p~  114 (422)
                      .......+|+|.|+++. |.++.+++++..+..+...+..++.|+++||+|++|... .+.+...+.  ..+++. ..+ 
T Consensus       265 ~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~-  341 (438)
T TIGR00712       265 LLRYGVLDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFKGNRGA-TGVFFMTLVTIAVIVYW-MNP-  341 (438)
T ss_pred             HHHHHHHHhHHHHHHHccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccH-HHHHHHHHHHHHHHHHH-hcC-
Confidence            33344557899999998 999999999999999999999999999999997544322 232222211  112121 011 


Q ss_pred             cccCCccchhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCccchhhHHHHHHHHHHHHH-HHHHHHHHHHHhhccCC
Q 014600          115 RILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVAN-LSLYAIAFIVFSVSTAK  193 (422)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~al~~~~t~~~~eR~~l~~~~~~~~~ig~-~l~~~~~~~l~~~~~~~  193 (422)
                          ..+.+ . ....+  ...+.+.............|..+ +++|++..++.+....+|+ .+++.+.+.+.+.    
T Consensus       342 ----~~~~~-~-~~~~~--~~~g~~~~~~~~~~~~~~~~~~~-~~~~g~~~g~~~~~~~~gg~~~gp~l~G~l~~~----  408 (438)
T TIGR00712       342 ----AGNPL-V-DMICM--IVIGFLIYGPVMLIGLHALELAP-KKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDF----  408 (438)
T ss_pred             ----CCchH-H-HHHHH--HHHHHHHccHHHHHHHHHHHhcC-hhheeeehhhhchHHHhhhhhhcchhHHHHHHh----
Confidence                11111 1 11111  12222211111112234556665 6789999998877666654 4566655555442    


Q ss_pred             CCCchHHHHHHHHHHHHHHHHHHHhhhhccccCc
Q 014600          194 THADLENQYRWIAYSSIFIGCCFVGIFLSRTEEP  227 (422)
Q Consensus       194 g~~~~~~~~~~~~~i~~~i~~i~~~i~~~~~~E~  227 (422)
                            .+|.+.+.+...+.+++.+...+..||+
T Consensus       409 ------~g~~~~~~~~~~~~~~~~~~~~~~~~~~  436 (438)
T TIGR00712       409 ------FGWDGGFMVMIGGSILAVILLIVVMIGE  436 (438)
T ss_pred             ------ccchHHHHHHHHHHHHHHHHHHHHHhhc
Confidence                  2566666666555666666666666764

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>PRK11010 ampG muropeptide transporter; Validated

Probab=98.51  E-value=7.2e-06  Score=84.43  Aligned_cols=162  Identities=14%  Similarity=0.090  Sum_probs=96.1

Q ss_pred             HHHHHHHHHHHHHHHh-CCChhHHHHHH-HHHHHHhhhhhhhhhhhhcccCCchhHHHHHHHHHHHHHHHhhcCccCccc
Q 014600           39 TAACWFTYLLLFLTDI-GLSPRGAAAVM-LSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRI  116 (422)
Q Consensus        39 ~~~~~~~~l~~f~t~~-gls~~~~g~i~-~i~~l~~ai~~p~~G~lsDr~Grrrp~ll~g~i~~~i~~~~lf~~~~p~~~  116 (422)
                      .......+.++|+.+. |.++.++|.+. ....+...+..++.|+++||+||||..+ .+.+..++.....+.  ..  .
T Consensus       237 ~~~~~~~~~~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~-i~~~l~~l~~l~~~~--l~--~  311 (491)
T PRK11010        237 GDAFAMSLTTTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLFRALM-IFGILQGVSNAGYWL--LS--I  311 (491)
T ss_pred             HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH-HHHHHHHHHHHHHHH--HH--h
Confidence            3334455677888776 99999999997 4667788899999999999999988744 344443443322111  00  0


Q ss_pred             cCCccchhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCC
Q 014600          117 LSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHA  196 (422)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~al~~~~t~~~~eR~~l~~~~~~~~~ig~~l~~~~~~~l~~~~~~~g~~  196 (422)
                      . ..+.......    ..+..++.++...+..++..++.+ ++.+++..+..+...++|..+++.+.+.+.+.       
T Consensus       312 ~-~~~~~~l~~~----~~l~~~~~g~~~~~~~a~~~~l~~-~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~~-------  378 (491)
T PRK11010        312 T-DKNLYSMGAA----VFFENLCGGMGTAAFVALLMTLCN-KSFSATQFALLSALSAVGRVYVGPVAGWFVEA-------  378 (491)
T ss_pred             c-cccHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHcC-CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------
Confidence            1 1111111111    123333344444556777778776 45567777777777777776665555555442       


Q ss_pred             chHHHHHHHHHHHHHHHHHHHhhhh
Q 014600          197 DLENQYRWIAYSSIFIGCCFVGIFL  221 (422)
Q Consensus       197 ~~~~~~~~~~~i~~~i~~i~~~i~~  221 (422)
                         .||+..+.+.+++++++.+++.
T Consensus       379 ---~G~~~~f~~~~~~~l~~l~~~~  400 (491)
T PRK11010        379 ---HGWPTFYLFSVAAAVPGLLLLL  400 (491)
T ss_pred             ---hChHHHHHHHHHHHHHHHHHHH
Confidence               3566666666666665544443

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=98.51  E-value=1.5e-06  Score=89.05  Aligned_cols=152  Identities=16%  Similarity=-0.001  Sum_probs=88.3

Q ss_pred             HHHHHHHHHHHh-CCChhHHHHHHHHHHHHhhhhhhhhhhhhcccCCc-----hhHHHHHHHH-HHHHHHHhhcCccCcc
Q 014600           43 WFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHF-----KIWHGAGSVL-VAVSFSSVFGGCMPCR  115 (422)
Q Consensus        43 ~~~~l~~f~t~~-gls~~~~g~i~~i~~l~~ai~~p~~G~lsDr~Grr-----rp~ll~g~i~-~~i~~~~lf~~~~p~~  115 (422)
                      ..++++.|+.+. |+++..++.+..+..+...+..++.|+++||+|||     |.++...... .++... ++    +  
T Consensus       271 ~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~~~r~~~~~r~~~~~~~~~l~~i~~~-~~----~--  343 (476)
T PLN00028        271 MDNIIAEYFYDRFGLSLETAGAIAASFGLMNLFARPAGGYLSDVAARRFGMRGRLWALWIVQTLGGVFCI-WL----G--  343 (476)
T ss_pred             HHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHH-Hh----c--
Confidence            446778888887 99999999999999999999999999999999875     2333222222 222221 11    1  


Q ss_pred             ccCCccchhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCC
Q 014600          116 ILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTH  195 (422)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~al~~~~t~~~~eR~~l~~~~~~~~~ig~~l~~~~~~~l~~~~~~~g~  195 (422)
                      ..+  +.. ..+..+   ++++.+.........++.+++.  +++|+...++.+.++++|+.+++.    +... +    
T Consensus       344 ~~~--~~~-~~~~~~---~l~~~~~~~~~~~~~~~~~~~~--~~~~g~~~g~~~~~g~lg~~i~~~----l~~~-~----  406 (476)
T PLN00028        344 RAN--SLG-AAIVVM---ILFSIFVQAACGATFGIVPFVS--RRSLGVISGLTGAGGNVGAVLTQL----LFFT-G----  406 (476)
T ss_pred             ccc--hHH-HHHHHH---HHHHHHHHHhhhhhcccCcccC--hhhchhhhhhhhccccHHHHHHHH----HHHh-c----
Confidence            111  111 111111   2334444334444556666654  467888888876666666655443    2221 1    


Q ss_pred             CchHHHHHHHHHHHHHHHHHHHhhh
Q 014600          196 ADLENQYRWIAYSSIFIGCCFVGIF  220 (422)
Q Consensus       196 ~~~~~~~~~~~~i~~~i~~i~~~i~  220 (422)
                        ...+|...+.+.+++.+++.++.
T Consensus       407 --~~~~y~~~f~~~~~~~~i~~~~~  429 (476)
T PLN00028        407 --SSYSTETGISLMGVMIIACTLPV  429 (476)
T ss_pred             --CCccHhhHHHHHHHHHHHHHHHH
Confidence              11256666666665555554433

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=98.51  E-value=4.8e-06  Score=82.75  Aligned_cols=149  Identities=11%  Similarity=0.096  Sum_probs=108.0

Q ss_pred             eeeeeeccchhHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHhhhhhhhhhhhhcccCCchhHHHHHHHHHHHHH
Q 014600           25 SVLYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSF  104 (422)
Q Consensus        25 ~~~~y~~g~~~~~~~~~~~~~~l~~f~t~~gls~~~~g~i~~i~~l~~ai~~p~~G~lsDr~Grrrp~ll~g~i~~~i~~  104 (422)
                      +.+.+....+..........++++.|++|.|.++.++|.++.+..+...+..++.|++.||+|+||. +.++.+...+.+
T Consensus       206 ~~~~~l~~~~l~~~~~~~~~~~~~~~l~~~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~-l~~~~~~~~~~~  284 (382)
T TIGR00902       206 MNLRFLAAVCLIQGAHAAYYGFSAIYWQAAGISASATGLLWGIGVLAEIIIFAFSNKLFQNCSARDL-LLISAIACVGRW  284 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHH-HHHHHHHHHHHH
Confidence            3344555555556666677789999998889999999999999999999999999999999999877 567777777776


Q ss_pred             HHhhcCccCccccCCccchhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCccchhhHHHHHH-HHHHHHHHHHHHHH
Q 014600          105 SSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRN-AFTMVANLSLYAIA  183 (422)
Q Consensus       105 ~~lf~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~al~~~~t~~~~eR~~l~~~~~-~~~~ig~~l~~~~~  183 (422)
                      .++-.       .+  +.+ .   ......+.++.++....+...++.+. + +++|++..+..+ ....+|..+++.++
T Consensus       285 ~~~~~-------~~--~~~-~---~~~~q~l~g~~~~~~~~~~~~~i~~~-~-~~~~~~~q~~~~~~~~g~g~~~g~~~~  349 (382)
T TIGR00902       285 AIIGA-------IE--AFP-L---IFLLQILHCGTFAVCHLAAMRYIAAQ-P-GSEIAKLQALYNALAMGGLIAIFTAFA  349 (382)
T ss_pred             HHHHh-------Hh--hHH-H---HHHHHHHHHHHHHHHHHHHHHHHHhC-C-HhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            54321       11  111 1   12234567888888887777778775 3 567788777754 45567888888887


Q ss_pred             HHHHhh
Q 014600          184 FIVFSV  189 (422)
Q Consensus       184 ~~l~~~  189 (422)
                      +.+.+.
T Consensus       350 G~l~~~  355 (382)
T TIGR00902       350 GFIYPT  355 (382)
T ss_pred             HHHHHh
Confidence            777664

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=98.49  E-value=2.7e-06  Score=78.82  Aligned_cols=125  Identities=13%  Similarity=0.144  Sum_probs=96.5

Q ss_pred             HHHHHHHh-CCChhHHHHHHHHHHHHhhhhhhhhhhhhcccCCchhHHHHHHHHHHHHHHHhhcCccCccccCCccchhh
Q 014600           47 LLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVE  125 (422)
Q Consensus        47 l~~f~t~~-gls~~~~g~i~~i~~l~~ai~~p~~G~lsDr~Grrrp~ll~g~i~~~i~~~~lf~~~~p~~~~~~~~~~~~  125 (422)
                      -+.|+++- |+|+..+|.+.+.--.+.++.+|+.|.++||.||+.-|..-+++....+=..++..    .++|    +  
T Consensus       287 g~~fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~~a~~~tl~~H~~l~Ft----~lsP----y--  356 (459)
T KOG4686|consen  287 GPMFFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKYGFNLWWVASACILTLLGHSGLFFT----FLSP----Y--  356 (459)
T ss_pred             hHHHHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhhcceehhHHHHHHHHHHHhhhHHhh----hccH----H--
Confidence            46777886 99999999999999999999999999999999999888877777766664444421    0111    1  


Q ss_pred             hHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 014600          126 TISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVF  187 (422)
Q Consensus       126 ~~~~~~~~~l~~~~~~~~~~p~~al~~~~t~~~~eR~~l~~~~~~~~~ig~~l~~~~~~~l~  187 (422)
                       ...    .+.++.|+...-.++.+++.+.+ +++-++..++.+...++|-.+.+++.+.+.
T Consensus       357 -~~m----~~lGLsysllAcslWP~va~~vp-E~qLGTaygf~qsIqNLgla~i~Iiag~i~  412 (459)
T KOG4686|consen  357 -TSM----TFLGLSYSLLACSLWPCVASLVP-EEQLGTAYGFIQSIQNLGLAFIPIIAGFIA  412 (459)
T ss_pred             -HHH----HHHhhhHHHHHHHHhhhhhhhCC-HHHhcchHHHHHHHHhhhhhHHhhhhheee
Confidence             112    35788899888889999999986 567788888888888988877776665444

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=98.48  E-value=8.6e-07  Score=86.58  Aligned_cols=168  Identities=13%  Similarity=0.055  Sum_probs=104.5

Q ss_pred             eeccchhHHHHHHHHHHHHHHHHHHh-CCChhHHHHHHHHHHHHhhhhhhhhhhhhcc-c-CCchhHHHHHHHHHHHHHH
Q 014600           29 YGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDR-F-GHFKIWHGAGSVLVAVSFS  105 (422)
Q Consensus        29 y~~g~~~~~~~~~~~~~~l~~f~t~~-gls~~~~g~i~~i~~l~~ai~~p~~G~lsDr-~-Grrrp~ll~g~i~~~i~~~  105 (422)
                      -++.++..-+.-..+..+.|.|++|+ |.|...++...+..-+.......+.|++||| + |||.|--++..+...++..
T Consensus       257 la~a~vfvYivR~gi~dW~p~YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~~~i~~~~i~~~~~  336 (448)
T COG2271         257 LALANVFVYVVRYGINDWGPLYLSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGRRGPMALIFMLLITASLV  336 (448)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHH
Confidence            44444444455555678899999999 9999999999999999999999999999998 4 8999976777777777766


Q ss_pred             HhhcCccCccccCCccchhhhHHHHHHHHHHHHHHHHHHhhh---hhhhhhccCCccchhhHHHHHHHHHHH-HHHHHHH
Q 014600          106 SVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAH---MSMVNCITLNSTSRVVLTSCRNAFTMV-ANLSLYA  181 (422)
Q Consensus       106 ~lf~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~---~al~~~~t~~~~eR~~l~~~~~~~~~i-g~~l~~~  181 (422)
                      ..|.  .|     +.+.....+      +++.+++ ++..|.   .....|..+ .+--+.+.+++..++++ |...+..
T Consensus       337 ~~w~--~~-----~~~~~l~~~------~l~~iGf-~IyGPqmLiGl~a~e~~p-K~AaGtA~Gf~Glf~Yl~Ga~~a~~  401 (448)
T COG2271         337 LYWL--AP-----NGSYLLDAI------LLFIIGF-LIYGPQMLIGLAAAEFVP-KKAAGTATGFVGLFAYLIGAALAGL  401 (448)
T ss_pred             HHHc--CC-----CccHHHHHH------HHHHHHH-HHhhHHHHHHHHHhcccc-HhhccchhchhhhHHHHhhHHhcCC
Confidence            6553  22     222221111      1222222 223343   222344443 45567888898888888 5555443


Q ss_pred             HHHHHHhhccCCCCCchHHHHHHHHHHHHHHHHHHHhhhh
Q 014600          182 IAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFL  221 (422)
Q Consensus       182 ~~~~l~~~~~~~g~~~~~~~~~~~~~i~~~i~~i~~~i~~  221 (422)
                      ..    ....     | ..||...+++..+.++++.++..
T Consensus       402 ~~----g~i~-----d-~~gW~g~Fi~~~~~a~l~~lll~  431 (448)
T COG2271         402 PL----GYIA-----D-TWGWDGGFIVLSIAALLAILLLL  431 (448)
T ss_pred             cc----eeeE-----e-cCCCcchHHHHHHHHHHHHHHHH
Confidence            22    2221     1 14666666555554554444443

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=98.47  E-value=6.7e-06  Score=83.33  Aligned_cols=257  Identities=14%  Similarity=0.112  Sum_probs=138.4

Q ss_pred             HHHHHhhhhhhhhhhhhcccCCchhHHHHHHHHHHHHH-HHhhcCccCccccCCccchhhhHHHHHHHHHHHHHHHHHHh
Q 014600           67 SGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSF-SSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQV  145 (422)
Q Consensus        67 i~~l~~ai~~p~~G~lsDr~Grrrp~ll~g~i~~~i~~-~~lf~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  145 (422)
                      ...+...+..|.+|.++||||||.+.. .......+.- .+++.            .+     |.++..-..-++..+..
T Consensus        70 ~~~~~~~i~s~~iG~lSD~~grk~~L~-~~~~~~~l~~~~~~~~------------~~-----~~~~~~~l~g~~~~~~s  131 (463)
T KOG2816|consen   70 TAGLLTLISSPLIGALSDRYGRKVVLL-LPLFGTILPALCLLFQ------------GY-----WFFLLLGLSGGFSAIFS  131 (463)
T ss_pred             hhHHHHHHHHhhhHHhhhhhhhhhhHH-HHHHHHHHhHHHHHHH------------HH-----HHhhhcccccchhhhhh
Confidence            446778889999999999999998854 3333333322 22221            01     11110112233445555


Q ss_pred             hhhhhhhhccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchHHHHHHHHHHHHHHHHHHHhhhhcccc
Q 014600          146 AHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTE  225 (422)
Q Consensus       146 p~~al~~~~t~~~~eR~~l~~~~~~~~~ig~~l~~~~~~~l~~~~~~~g~~~~~~~~~~~~~i~~~i~~i~~~i~~~~~~  225 (422)
                      ...+.++|.++ .++|.+..+.-+.....+..+++.++.-+...          .++...+.+..+..++......+.+|
T Consensus       132 ~~~a~vadis~-~~~R~~~~gll~~~~~~~~~~~p~~~~~~~~~----------~~~a~~f~ia~~~~~~~~~y~~~~l~  200 (463)
T KOG2816|consen  132 VGFAYVADISS-EEERSSSIGLLSGTFGAGLVIGPALGGYLVKF----------LGIALVFLIAAASGILSLLYMLLFLP  200 (463)
T ss_pred             hhhhheeeccc-hhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHh----------cCchHHHHHHHHHHHHHHHHHhhccc
Confidence            56788889876 56888777776665555555655555444332          24555677777777777778888899


Q ss_pred             CcccccccC---------C---CcchhhhHHHHHH---hHHHHHHHHHHHHHHHH-HHhhhHHHHHHhhhccCccchhHh
Q 014600          226 EPRLKMGLR---------G---NSHARISWAYWFK---KILYYQVALVYMLTRLV-VNVSQAYLAFYVINDLRMGQSAKA  289 (422)
Q Consensus       226 E~~~~~~~~---------~---~~~~~~~~~~~~~---n~~f~~~~~~~~~~~~~-~~~~~~y~~~y~~~~~~l~~~~~~  289 (422)
                      |+..+++++         .   +.+..+.++...+   .|..+.++...++.... .....-..+.|.....+++....+
T Consensus       201 Esl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~l~l~~~~~~~~~~~~~~~~~~~yl~~~f~w~~~~~s  280 (463)
T KOG2816|consen  201 ESLQEKERSDATLRELTPGSLDSSHVADAFQSLTKVGPDRLLLLLLLVAFLSSLPEAGGASDVLLLYLKAKFGWNKKEFS  280 (463)
T ss_pred             cccCccccccccccccCCCcccchhhhhhhhhhcccCCCccchHHHHHHHHHHHHHhcCceeEEEEEEeeecCcCHHHHH
Confidence            975433221         0   0111222333332   22233333222222222 111121334455555566554321


Q ss_pred             ----------------HHHHHHHH--------HHHH-------HHHHHH----------------HH---Hhhhhhhhhc
Q 014600          290 ----------------LVPAIIYI--------CSFI-------VSILLQ----------------VT---GISMQNVLVG  319 (422)
Q Consensus       290 ----------------~iP~~~~~--------~~~~-------~~~~~~----------------v~---~~~~~~~~~g  319 (422)
                                      ..|.....        .|..       ...+.+                ++   ..++.+-..+
T Consensus       281 ~~~~~~~~~~~i~~l~~~~~l~~~l~~~~~i~lGl~~~~~~~~~~af~~~~w~~~~~~v~~~~~~~~~pa~~s~~s~~v~  360 (463)
T KOG2816|consen  281 DLLSLVSILGIISQLLLLPLLSSILGEKRLISLGLLSEFLQLLLFAFATETWMMFAAGVVVALAGIVFPAIRAFASILVS  360 (463)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHHHHHhccchhhhHHHHHHHhhcchhHHHHhHHHhhcc
Confidence                            12221110        1110       000010                00   1233566678


Q ss_pred             CccccccceehhhHHHHHHHHHHHHHHHHHhHhhC
Q 014600          320 EDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQSMS  354 (422)
Q Consensus       320 ~r~~g~~~~~s~~~~~~K~~~a~~~~i~g~~l~~~  354 (422)
                      +++.|.  .++..+.++.++..+++.+.+.+...+
T Consensus       361 ~~e~g~--v~~~is~i~~l~~~~~~~~~~~i~~~t  393 (463)
T KOG2816|consen  361 PEEQGK--VFGIISGIEGLSGVVSPALYGNIFALT  393 (463)
T ss_pred             cccccc--hhhHHHHHHHHhhhhhHHHHHHHHHHH
Confidence            889999  999999999999999999999886654

>PRK12307 putative sialic acid transporter; Provisional

Probab=98.47  E-value=5.4e-06  Score=83.35  Aligned_cols=131  Identities=14%  Similarity=0.084  Sum_probs=85.5

Q ss_pred             HHHHHHHHHHHhCCChhHHHHHHHHHHHHhhhhhhhhhhhhcccCCchhHHHHHHHHHHHHHHHhhcCccCccccCCccc
Q 014600           43 WFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTL  122 (422)
Q Consensus        43 ~~~~l~~f~t~~gls~~~~g~i~~i~~l~~ai~~p~~G~lsDr~Grrrp~ll~g~i~~~i~~~~lf~~~~p~~~~~~~~~  122 (422)
                      ...+++.|+++.|.++...+.+..+..+...+..++.|+++||+||||.+ ..+.+..++....++.  .+     .. .
T Consensus       250 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~-~~~~~~~~~~~~~~~~--~~-----~~-~  320 (426)
T PRK12307        250 IFGLLPTYLAGEGFDTGVVSNLMTAAAFGTVLGNIVWGLCADRIGLKKTF-SIGLLMSFLFIFPLFR--IP-----QD-N  320 (426)
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHH-HHHHHHHHHHHHHHHH--Hc-----cc-c
Confidence            45677888887799999999999999999999999999999999998874 4455554444333321  11     11 1


Q ss_pred             hhhhHHHHHHHHHHHHHHH--HHHhhhhhhhhhccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014600          123 KVETISYCVFAAIFNVGWA--ATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFS  188 (422)
Q Consensus       123 ~~~~~~~~~~~~l~~~~~~--~~~~p~~al~~~~t~~~~eR~~l~~~~~~~~~ig~~l~~~~~~~l~~  188 (422)
                      ... ...    .+++.++.  .......++..|..+ ++.|++..++-.....+|+.+++.+.+.+.+
T Consensus       321 ~~~-~~~----~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~g~~~g~~~~~~~~~~~~gp~~~g~l~~  382 (426)
T PRK12307        321 YLL-LGA----CLFGLMATNVGVGGLVPKFLYDYFP-LEVRGLGTGLIYNLAATSGTFNSMAATWLGI  382 (426)
T ss_pred             HHH-HHH----HHHHHHHhcccHhHHHHHHHHHhCc-HHHHhhhhhHHHHHHhHHHHHHHHHHHHHHH
Confidence            111 111    12222221  122234456678776 5789999998877888888887776655543

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=98.46  E-value=8.9e-06  Score=81.33  Aligned_cols=193  Identities=13%  Similarity=0.101  Sum_probs=136.2

Q ss_pred             CCceeeeeeeccchhHHHHHHHHHHHHHHHHHHh-CCChhHHHHHHHHHHHHhhhhhhhhhhhhcccCCchhHHHHHHHH
Q 014600           21 VGRWSVLYYGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVL   99 (422)
Q Consensus        21 l~~~~~~~y~~g~~~~~~~~~~~~~~l~~f~t~~-gls~~~~g~i~~i~~l~~ai~~p~~G~lsDr~Grrrp~ll~g~i~   99 (422)
                      ++.++.+.+-...+..+.......+|...|++|. |.+....|.+++++.+.....--..+++..|+|-|+. +.++.+.
T Consensus       204 lk~~~~~~Fll~~~l~~~~~~~~~~f~~~yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~l-l~~a~~~  282 (400)
T PF03825_consen  204 LKNPRFLVFLLAAFLIGISHAAYYTFFSIYLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIKWL-LLLALVA  282 (400)
T ss_pred             hcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHH-HHHHHHH
Confidence            3455666777777778888888889999999999 5889999999999999999888899999999998877 5567666


Q ss_pred             HHHHHHHhhcCccCccccCCccchhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCccchhhHHHHHHHH-HHHHHHH
Q 014600          100 VAVSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAF-TMVANLS  178 (422)
Q Consensus       100 ~~i~~~~lf~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~al~~~~t~~~~eR~~l~~~~~~~-~~ig~~l  178 (422)
                      .++=+.+...       .++ +.+.....-++-..+.++.|+++.+....++.+..+ ++.|.+..++.... .++|..+
T Consensus       283 ~~vR~~l~a~-------~~~-~~~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p-~~~~at~Q~l~~~~~~Glg~~i  353 (400)
T PF03825_consen  283 YAVRWLLYAY-------FSD-PWPFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAP-PELRATAQGLYSALSFGLGGAI  353 (400)
T ss_pred             HHHHHHHHHH-------hcC-CcHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCC-ccchHHHHHHHHHHHhhHHHHH
Confidence            6665544321       101 111111111111235788899888888888998886 67899999976654 5789999


Q ss_pred             HHHHHHHHHhhccCCCCCchHHHHHHHHHHHHHHHHHHHhhhhccccCc
Q 014600          179 LYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEP  227 (422)
Q Consensus       179 ~~~~~~~l~~~~~~~g~~~~~~~~~~~~~i~~~i~~i~~~i~~~~~~E~  227 (422)
                      ++.+++.+.+..+.    +....|.....+.+.+.++..++.++.-||+
T Consensus       354 G~~igG~l~~~~g~----~~~~~~~~~~~v~a~~~~~~~~~f~~~fk~~  398 (400)
T PF03825_consen  354 GSLIGGWLYDAFGA----RGMFDWSAVFLVFAVMALVILVLFVILFKPK  398 (400)
T ss_pred             HHHHHHHHHHHhcc----hhhhhHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence            99999988886541    2223344455566666666666666666775

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=98.45  E-value=6.1e-06  Score=82.42  Aligned_cols=142  Identities=17%  Similarity=0.063  Sum_probs=100.8

Q ss_pred             chhHHHHHHHHHHHHHHHHHHh-C----CChhHHHHHHHHHHHHhhhhhhhhhhhhcc-cCCchhHHHHHHHHHHHHHHH
Q 014600           33 HMLNDITAACWFTYLLLFLTDI-G----LSPRGAAAVMLSGQIADGFATIFIGELIDR-FGHFKIWHGAGSVLVAVSFSS  106 (422)
Q Consensus        33 ~~~~~~~~~~~~~~l~~f~t~~-g----ls~~~~g~i~~i~~l~~ai~~p~~G~lsDr-~Grrrp~ll~g~i~~~i~~~~  106 (422)
                      ++--.+.++....-+..|++.. +    ++.+++.-++..+.-+-=.+..+.||++|| +|+||. +..|+++.+++-+.
T Consensus        30 E~WERFsyYGmraiL~~Yl~~~~~~gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~t-I~lGail~~iGh~~  108 (498)
T COG3104          30 ELWERFSYYGMRAILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRT-IVLGAILMAIGHLV  108 (498)
T ss_pred             HHHHHHhhhhhHHHHHHHHHHhccccCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHH-HHHHHHHHHHHHHH
Confidence            3445555666666677776654 6    999998888888888777888899999999 999999 66899999999888


Q ss_pred             hhcCccCccccCCccchhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhccCC-ccchhhHHHHHHHHHHHHHHHHHHHHHH
Q 014600          107 VFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLN-STSRVVLTSCRNAFTMVANLSLYAIAFI  185 (422)
Q Consensus       107 lf~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~al~~~~t~~-~~eR~~l~~~~~~~~~ig~~l~~~~~~~  185 (422)
                      +..   +    +..+..   ..|+- ..+..++++.+=....+++.|+-++ +.+|....+...+..++|+++.+.+.+.
T Consensus       109 L~~---~----~~~~~~---gl~i~-L~~I~iG~Gl~K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i~~~  177 (498)
T COG3104         109 LAI---S----SVSGPG---GLYIG-LALIIVGTGLFKPNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPIITGL  177 (498)
T ss_pred             Hhc---c----cccccc---HHHHH-HHHHHhccccccccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHHHHH
Confidence            774   2    101121   12221 1234477777777778888888653 3447778888888889998887766543


Q ss_pred             H
Q 014600          186 V  186 (422)
Q Consensus       186 l  186 (422)
                      +
T Consensus       178 ~  178 (498)
T COG3104         178 L  178 (498)
T ss_pred             H
Confidence            3

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=98.44  E-value=7.6e-06  Score=81.29  Aligned_cols=141  Identities=11%  Similarity=0.101  Sum_probs=96.2

Q ss_pred             chhHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHhhhhhhhhhhhhcccCCchhHHHHHHHHHHHHHHHhhcCcc
Q 014600           33 HMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCM  112 (422)
Q Consensus        33 ~~~~~~~~~~~~~~l~~f~t~~gls~~~~g~i~~i~~l~~ai~~p~~G~lsDr~Grrrp~ll~g~i~~~i~~~~lf~~~~  112 (422)
                      .+..+.......++++.|.+|.|.+...+|.++.+..+...+..++.|++.||+|+||. +..+.+..++.+.++..   
T Consensus       214 ~~l~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~-l~~~~~~~~~~~~~~~~---  289 (382)
T PRK11128        214 VSLLQGSHAAYYGFSAIYWQAAGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARDL-LLLSAICGVVRWGLMGS---  289 (382)
T ss_pred             HHHHHHHhHhHHHHHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH-HHHHHHHHHHHHHHHHh---
Confidence            33334444455678888887779999999999999999999999999999999999888 55677777766544331   


Q ss_pred             CccccCCccchhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCccchhhHHHHHH-HHHHHHHHHHHHHHHHHHhh
Q 014600          113 PCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRN-AFTMVANLSLYAIAFIVFSV  189 (422)
Q Consensus       113 p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~al~~~~t~~~~eR~~l~~~~~-~~~~ig~~l~~~~~~~l~~~  189 (422)
                          .+  +.+ .   ..+..++++++++....+...+..+.  +++++++..+..+ ....+|..+++.+++.+.+.
T Consensus       290 ----~~--~~~-~---~~~~~~l~g~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~  355 (382)
T PRK11128        290 ----TT--ALP-W---LIVIQILHCGTFTVCHLAAMRYIAAR--PGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQH  355 (382)
T ss_pred             ----hh--hHH-H---HHHHHHHHHHHHHHHHHHHHHHHHHC--CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence                11  112 1   12223467788887777777777664  3556677777654 33455666777777666654

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=98.44  E-value=4.3e-06  Score=86.68  Aligned_cols=145  Identities=16%  Similarity=0.108  Sum_probs=102.3

Q ss_pred             hCCChhHHHHHHHHHHHHhhhhhhhhhhhhcccCCchhHHHHHHHHHHHHHHHhhcCccCccccCCccchhhhHHHHHHH
Q 014600           54 IGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVETISYCVFA  133 (422)
Q Consensus        54 ~gls~~~~g~i~~i~~l~~ai~~p~~G~lsDr~Grrrp~ll~g~i~~~i~~~~lf~~~~p~~~~~~~~~~~~~~~~~~~~  133 (422)
                      +..+.....+..++..+...++..+.|.++||+|||+.++ .+.....++-.+.-       ++++      +..+++++
T Consensus       113 ~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~-~~~~~~~i~~~~~a-------~a~~------~~~~~~~R  178 (521)
T KOG0255|consen  113 VCDSSTLVALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLL-VSLLLFIIFGILTA-------FAPN------YWMFLIFR  178 (521)
T ss_pred             eeCcHhHHHHHHHHHHHHHHHHHhhheehHhhcccHHHHH-HHHHHHHHHHHHHH-------HhCc------HHHHHHHH
Confidence            3778888888889999999999999999999999988854 55555555432211       1222      23455566


Q ss_pred             HHHHHHHHHHHhhhhhhhhhccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchHHHHHHHHHHHHHHH
Q 014600          134 AIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIG  213 (422)
Q Consensus       134 ~l~~~~~~~~~~p~~al~~~~t~~~~eR~~l~~~~~~~~~ig~~l~~~~~~~l~~~~~~~g~~~~~~~~~~~~~i~~~i~  213 (422)
                      .+.+++.+........+..|+.. +++|+...++ ......++.+++...    ..+        ..+|||..++..++.
T Consensus       179 fl~G~~~~~~~~~~~~~~~E~~~-~~~R~~~~~~-~~~~~~~~~~~~~~~----a~~--------~~~Wr~~~~~~~~~~  244 (521)
T KOG0255|consen  179 FLSGFFGSGPLTVGFGLVAEIVS-PKQRGLALTL-GGFFFVGGLMLPAGA----AYI--------TRDWRWLFWIISIPS  244 (521)
T ss_pred             HHHHhhccchhHHhHhhheeecC-cchhhHHHHH-HHHHHHHHHHHHHHH----HHH--------HhhHHHHHHHHHHHH
Confidence            77888888888888889999986 7899999988 555555555544332    322        138999998887777


Q ss_pred             HHHHhhhhccccCc
Q 014600          214 CCFVGIFLSRTEEP  227 (422)
Q Consensus       214 ~i~~~i~~~~~~E~  227 (422)
                      .+..++ ++..+|.
T Consensus       245 ~~~~~~-~~l~~Es  257 (521)
T KOG0255|consen  245 GLFLLL-WFLPPES  257 (521)
T ss_pred             HHHHHH-HHccCcC
Confidence            766555 5555564

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=98.43  E-value=4.7e-05  Score=75.27  Aligned_cols=163  Identities=16%  Similarity=0.161  Sum_probs=93.2

Q ss_pred             CChhHHHHHHHHHHHHhhhhhhhhhhhhcccCCchhHHHHHHHHHHHHHHHhhcCccCccccCCccchhhhHHHHHHHHH
Q 014600           56 LSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVETISYCVFAAI  135 (422)
Q Consensus        56 ls~~~~g~i~~i~~l~~ai~~p~~G~lsDr~Grrrp~ll~g~i~~~i~~~~lf~~~~p~~~~~~~~~~~~~~~~~~~~~l  135 (422)
                      .+....+.+..++.+-..+.+.+.|++.||+||||.+.. ..+++.++.++.-   .|..-.+..+   ...+....+.+
T Consensus        81 ~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~GRK~vYG~-~liImIi~t~~~~---~s~~~~~~~~---~m~~L~~~R~~  153 (538)
T KOG0252|consen   81 YPSGVLALVNAAALVGTIFGQLFFGWLGDKFGRKKVYGK-ELIIMIICSALSG---LSVGTTSPLG---VMMTLCFFRFL  153 (538)
T ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhH-HHHHHHHHHHHhc---cCCCCCCCcc---hhhHHHHHHHH
Confidence            788899999999999999999999999999999999764 4555555554332   2311111111   11222223345


Q ss_pred             HHHHHHHHHhhhhhh-hhhccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCC-----chHHHHHHHHHHH
Q 014600          136 FNVGWAATQVAHMSM-VNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHA-----DLENQYRWIAYSS  209 (422)
Q Consensus       136 ~~~~~~~~~~p~~al-~~~~t~~~~eR~~l~~~~~~~~~ig~~l~~~~~~~l~~~~~~~g~~-----~~~~~~~~~~~i~  209 (422)
                      .+++-+.= -|..|. .+|. .+.+.|+...+.-..+.+.|.+.+.+++..+...+....++     .-+.-||..+.+-
T Consensus       154 LGiGIGGD-YPlSAtI~SE~-an~~~RGa~iaavFa~Qg~GilaG~ivt~Iv~~~fe~~~~~~~~~~~ld~vWRl~~glg  231 (538)
T KOG0252|consen  154 LGIGIGGD-YPLSATIMSES-ANKKTRGAFIAAVFAMQGFGILAGGIVALIVSAIFEKIFNGPSTYPHLDGVWRIIFGLG  231 (538)
T ss_pred             hhccccCC-CcchHHHhhhh-hhhccccceeEEEEEecchhHhhccHHHHHHHHHHhccCCCCCCchHHHHHHHHHHHHH
Confidence            66665543 344444 4454 45778887666555555555555554444333322211001     1123488877665


Q ss_pred             HHHHHHHHhhhhccccCcc
Q 014600          210 IFIGCCFVGIFLSRTEEPR  228 (422)
Q Consensus       210 ~~i~~i~~~i~~~~~~E~~  228 (422)
                      ++.++.+ +..-...||++
T Consensus       232 ~vpa~~~-ly~Rl~M~Et~  249 (538)
T KOG0252|consen  232 AVPALLV-LYFRLKMPETA  249 (538)
T ss_pred             HHHHHHH-HHhhhcCCcch
Confidence            5555543 34445567753

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=98.43  E-value=1.6e-06  Score=87.17  Aligned_cols=141  Identities=11%  Similarity=-0.006  Sum_probs=86.5

Q ss_pred             hhHHHHHHHHHHHHHHHHHHh--CCChhHHHHHHHHHHHHhhhhhhhhhhhhcccCCchhHHHHHHHHHHHHHHHhhcCc
Q 014600           34 MLNDITAACWFTYLLLFLTDI--GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGC  111 (422)
Q Consensus        34 ~~~~~~~~~~~~~l~~f~t~~--gls~~~~g~i~~i~~l~~ai~~p~~G~lsDr~Grrrp~ll~g~i~~~i~~~~lf~~~  111 (422)
                      +.....+....+|+|.|+++.  |.+...++.......+...+..++.|+++||+||||..+....+...+++.+..   
T Consensus       252 ~~~~~~~~~~~~~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr~~~r~~~~~~~~~~~~~~~~~~~---  328 (412)
T TIGR02332       252 FCLTNTLSAINIWTPQILQSFNQGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDRLKERKHHTALPYLFAAAGWLLAS---  328 (412)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCCcHHHhHHHhhHHHHHHHHHHHHHHHHhcccCccHHHHHHHHHHHHHHHHHHH---
Confidence            334444555678999999985  788999999999999999999999999999999888654444444444332211   


Q ss_pred             cCccccCCccchhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014600          112 MPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFS  188 (422)
Q Consensus       112 ~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~al~~~~t~~~~eR~~l~~~~~~~~~ig~~l~~~~~~~l~~  188 (422)
                       +   .+  +.. .  .+..+ .+...+.......+.....|. .++++|++..++.+....+|+.+++.+.+.+.+
T Consensus       329 -~---~~--~~~-~--~~~~~-~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~a~g~~~~~~~~g~~~~p~~~g~i~~  394 (412)
T TIGR02332       329 -A---TD--HNL-I--QLLGI-IMASMGSFSAMAIFWTTPDQS-ISLQARAIAIAVINATGNIGSALSPFLIGILKD  394 (412)
T ss_pred             -h---cC--CHH-H--HHHHH-HHHHHHhhhhhhHHHhhcccc-cchHHHHHHHHHHHHhhhhhhhhhhhhcccccc
Confidence             1   11  111 1  11100 112222211112222333343 346789999999998888888887765544443

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>TIGR00895 2A0115 benzoate transport

Probab=98.43  E-value=2.6e-06  Score=84.13  Aligned_cols=133  Identities=16%  Similarity=0.016  Sum_probs=90.8

Q ss_pred             HHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHhhhhhhhhhhhhcccCCchhHHHHHHHHHHHHHHHhhcCccCccc
Q 014600           37 DITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRI  116 (422)
Q Consensus        37 ~~~~~~~~~~l~~f~t~~gls~~~~g~i~~i~~l~~ai~~p~~G~lsDr~Grrrp~ll~g~i~~~i~~~~lf~~~~p~~~  116 (422)
                      .........+++++..+.|.++.+.+.+..+..+...+..++.|+++||+||| +.+.. ....++...+++..      
T Consensus       263 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~-~~~~~~~~~~~~~~------  334 (398)
T TIGR00895       263 LVGVYFLTNWLPKLMVELGFSLSLAATGGALFNFGGVIGSIIFGWLADRLGPR-VTALL-LLLGAVFAVLVGST------  334 (398)
T ss_pred             HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchH-HHHHH-HHHHHHHHHHHHHH------
Confidence            33444455667744444599999999999999999999999999999999988 43433 33333333222210      


Q ss_pred             cCCccchhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCccchhhHHHHHHHHHHHHHHHHHHHHH
Q 014600          117 LSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAF  184 (422)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~al~~~~t~~~~eR~~l~~~~~~~~~ig~~l~~~~~~  184 (422)
                      .  .+....    ....++.+++++.......++..+..+ +++|++..++......+|..+++.+.+
T Consensus       335 ~--~~~~~~----~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~g~~~g~~~~~~~~g~~~g~~~~G  395 (398)
T TIGR00895       335 L--FSPTLL----LLLGAIAGFFVNGGQSGLYALMALFYP-TAIRATGVGWAIGIGRLGAIIGPILAG  395 (398)
T ss_pred             h--hCHHHH----HHHHHHHHHHHHHHHHHHHHHHhhcCC-HHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence            0  111111    122245777888888888899999876 678999999888888888877765543

>PRK10054 putative transporter; Provisional

Probab=98.38  E-value=9e-06  Score=81.28  Aligned_cols=180  Identities=8%  Similarity=0.067  Sum_probs=108.9

Q ss_pred             eeeeeeeccchhHHHHHHHHHHHHHHHHHHh---CCChhHHHHHHHHHHHHhhhhhhhhhhhhcccCCchhHHHHHHHHH
Q 014600           24 WSVLYYGSGHMLNDITAACWFTYLLLFLTDI---GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLV  100 (422)
Q Consensus        24 ~~~~~y~~g~~~~~~~~~~~~~~l~~f~t~~---gls~~~~g~i~~i~~l~~ai~~p~~G~lsDr~Grrrp~ll~g~i~~  100 (422)
                      ++.+.+....+...........+++.|..+.   +.+...+|.++.+..+......+..|++.||+|+|+. +..+....
T Consensus       206 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-l~~~~~~~  284 (395)
T PRK10054        206 KALLWFTCSGFLASFVSGAFASCISQYVMVVADSDFAEKVVAVVLPVNAAMVVSLQYSVGRRLNAANIRPL-MTAGTLCF  284 (395)
T ss_pred             ceehHHHHHHHHHHHHHHHhhhhHHHHHHHhcccchHHHHHHHHHHhhhhheeeehhHHHHHHccCCchhH-HHHHHHHH
Confidence            3334444444444444444445566666543   6778888999999988888889999999999998876 55666666


Q ss_pred             HHHHHHhhcCccCccccCCccchhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCccchhhHHHHHHHHHHHHHHHHH
Q 014600          101 AVSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLY  180 (422)
Q Consensus       101 ~i~~~~lf~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~al~~~~t~~~~eR~~l~~~~~~~~~ig~~l~~  180 (422)
                      +++...+..       . .. ..+.   +.+...++++++........+++.+..+ ++.|++..+..+ ...+|..+++
T Consensus       285 ~~~~~~~~~-------~-~~-~~~~---~~~~~~~~~~g~~~~~p~~~~~~~~~~p-~~~~~~~~~~~~-~~~~G~~~Gp  350 (395)
T PRK10054        285 VIGLVGFIF-------S-GN-SLLL---WGMSAAVFTVGEIIYAPGEYMLIDHIAP-PGMKASYFSAQS-LGWLGAAINP  350 (395)
T ss_pred             HHHHHHHHH-------c-ch-HHHH---HHHHHHHHHHHHHHHHhhHHHHHHHhCC-cccceehHhHHH-HHHHHHHHHH
Confidence            665543221       0 01 1111   1122235667766655566677778775 467777766543 4556777877


Q ss_pred             HHHHHHHhhccCCCCCchHHHHHHHHHHHHHHHHHHHhhhhccccCcc
Q 014600          181 AIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPR  228 (422)
Q Consensus       181 ~~~~~l~~~~~~~g~~~~~~~~~~~~~i~~~i~~i~~~i~~~~~~E~~  228 (422)
                      .+++.+.+..          ++...+.+.+....+..++.....+|||
T Consensus       351 ~~~G~l~~~~----------g~~~~~~~~~~~~~~~~~~~~~~~~~~~  388 (395)
T PRK10054        351 LVSGVILTTL----------PPWSLFVILALAIVAAWLLMLKGMRARP  388 (395)
T ss_pred             HHHHHHHHHc----------ChhhHHHHHHHHHHHHHHHHHhccccCc
Confidence            7777776643          3444445554445554455556667765

>PF12832 MFS_1_like: MFS_1 like family

Probab=98.38  E-value=1.2e-06  Score=66.02  Aligned_cols=58  Identities=26%  Similarity=0.437  Sum_probs=51.8

Q ss_pred             HHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHhhhhhhhhhhhhcccCCchhHHHHH
Q 014600           39 TAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAG   96 (422)
Q Consensus        39 ~~~~~~~~l~~f~t~~gls~~~~g~i~~i~~l~~ai~~p~~G~lsDr~Grrrp~ll~g   96 (422)
                      ..+...+|++.|+.+.|+++.++|.+..+..+...+..|++|.++||+||+|..+..+
T Consensus        15 ~~g~~~Pfl~~~~~~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~   72 (77)
T PF12832_consen   15 ALGCLYPFLPLYLKQLGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGS   72 (77)
T ss_pred             HHHHHHhhhhHhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHH
Confidence            3455678999999999999999999999999999999999999999999999866543

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=98.36  E-value=6.5e-06  Score=82.12  Aligned_cols=165  Identities=10%  Similarity=-0.024  Sum_probs=98.4

Q ss_pred             chhHHHHHHHHHHHHHHHHHHh----CCChhHHHHHHHHHHHHhhhhhhhhhhhhcccCCchhHHHHHHHHHHHHHHHhh
Q 014600           33 HMLNDITAACWFTYLLLFLTDI----GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVF  108 (422)
Q Consensus        33 ~~~~~~~~~~~~~~l~~f~t~~----gls~~~~g~i~~i~~l~~ai~~p~~G~lsDr~Grrrp~ll~g~i~~~i~~~~lf  108 (422)
                      .+.....+.....+++.|+++.    +.+....|.+..+..+...+..+..|++.||+||||. +..+..+.++.+.+..
T Consensus       224 ~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~-l~~~~~l~~l~~~~~~  302 (396)
T TIGR00882       224 VVGVACVYDVFDQQFANFFTSFFATPQQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAKNA-LLIAGTIMSVRIIGSS  302 (396)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchh-HHHHHHHHHHHHHHHH
Confidence            3333344444445667777764    4566788999999999999999999999999999887 5566666666554422


Q ss_pred             cCccCccccCCccchhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCccchhhHHHH-HHHHHHHHHHHHHHHHHHHH
Q 014600          109 GGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSC-RNAFTMVANLSLYAIAFIVF  187 (422)
Q Consensus       109 ~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~al~~~~t~~~~eR~~l~~~-~~~~~~ig~~l~~~~~~~l~  187 (422)
                      .       .+  +.++.    .+...+.++++............+..+ ++.|+...+. .+....+|+.+++.+.+.+.
T Consensus       303 ~-------~~--~~~~~----~~~~~l~g~~~~~~~~~~~~~~~~~~~-~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~  368 (396)
T TIGR00882       303 F-------AT--TALEV----VILKMLHAFEVPFLLVGCFKYITSQFD-VRLSATIYLIGFQFAKQLAMIFLSTLAGNMY  368 (396)
T ss_pred             h-------cC--ChHHH----HHHHHHHHHHHHHHHHHHHHHHHHhCC-cceEEEeehHHHHHHHHHHHHHHHHhHHHHH
Confidence            1       11  12211    112234556655544434444444433 3334443333 34566777777777776666


Q ss_pred             hhccCCCCCchHHHHHHHHHHHHHHHHHHHhhhhc
Q 014600          188 SVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLS  222 (422)
Q Consensus       188 ~~~~~~g~~~~~~~~~~~~~i~~~i~~i~~~i~~~  222 (422)
                      +.          .||+..+.+.+++.++..++..+
T Consensus       369 ~~----------~G~~~~f~~~~~~~~i~~~~~~~  393 (396)
T TIGR00882       369 DS----------IGFQGAYLVLGCIVLLFTLISVF  393 (396)
T ss_pred             Hh----------cccHHHHHHHHHHHHHHHHHHHH
Confidence            53          25666666666666665555443

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=98.35  E-value=7e-06  Score=93.10  Aligned_cols=132  Identities=14%  Similarity=0.149  Sum_probs=95.8

Q ss_pred             HHHHHHHHHHHHHHHHh-CCChh-HHHHHHHHHHHHhhhhhhhhhhhhcccCCchhHHHHHHHHHHHHHHHhhcCccCcc
Q 014600           38 ITAACWFTYLLLFLTDI-GLSPR-GAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCR  115 (422)
Q Consensus        38 ~~~~~~~~~l~~f~t~~-gls~~-~~g~i~~i~~l~~ai~~p~~G~lsDr~Grrrp~ll~g~i~~~i~~~~lf~~~~p~~  115 (422)
                      ........+++.|+.+. |++.. ..|++.+...+...+..++.|+++||+++|+. +.++.+..+++..++..      
T Consensus       246 ~~~~~~~~~~~~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~-~~~~~~~~~~~~~~~~~------  318 (1146)
T PRK08633        246 FISQLAQANFPAYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGL-VPLGALGLALSLFLLPT------  318 (1146)
T ss_pred             HHHHHHHHhhHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEccc-hhHHHHHHHHHHHHHHH------
Confidence            33344556788888887 99999 99999999999999999999999999998876 44555666555444331      


Q ss_pred             ccCCccchhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCccchhhHHHHHHHHHHHHHHHHHHHHH
Q 014600          116 ILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAF  184 (422)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~al~~~~t~~~~eR~~l~~~~~~~~~ig~~l~~~~~~  184 (422)
                       .+  +.+    ..++..++++++.++..++..+++.+.++ +++|++..+..+....+|.+++..++.
T Consensus       319 -~~--~~~----~~~~~~~~~g~~~~~~~~~~~~~~~~~~p-~~~rg~~~~~~~~~~~lg~~~~~~~~~  379 (1146)
T PRK08633        319 -AP--SLA----SVLVLFFLFGFSAGLFIVPLNALIQFRAP-EKELGKVLAANNFLQNVGMLLFLALTT  379 (1146)
T ss_pred             -hh--hHH----HHHHHHHHHHHHHHHhhHHHHHHHhhcCC-ccchhhhhHHHHHHHHHHHHHHHHHHH
Confidence             11  111    11222245777888888888899988876 678999999988888888766655543

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=98.33  E-value=3.1e-06  Score=82.16  Aligned_cols=138  Identities=16%  Similarity=0.171  Sum_probs=97.5

Q ss_pred             ccchhHHHHHHHHHHHHHHHHHHh-CCC-hhHHHHHHHHHHHHhhhhhhhhhhhhcccCCchhHHHHHHHHHHHHHHHhh
Q 014600           31 SGHMLNDITAACWFTYLLLFLTDI-GLS-PRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVF  108 (422)
Q Consensus        31 ~g~~~~~~~~~~~~~~l~~f~t~~-gls-~~~~g~i~~i~~l~~ai~~p~~G~lsDr~Grrrp~ll~g~i~~~i~~~~lf  108 (422)
                      ...+...........+++.|..+. |.+ ..+.+.+..+..+...+..++.|+++||+|+|+.... ......+....+.
T Consensus       213 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~  291 (352)
T PF07690_consen  213 IAFFLFFFVFSGFSFFLPLYLQEVLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRFGRRRRLLI-AILLLILGALGLL  291 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCCHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH-HHHHHHHHHHHHC
T ss_pred             hhhhHHHHHHHHhhcccchhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHH-HHHHHHHHHHHHH
Confidence            333444445555677888886666 999 8999999999999999999999999999999877544 4444444443333


Q ss_pred             cCccCccccCCccchhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCccchhhHHHHHHHHHHHHHHHHH
Q 014600          109 GGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLY  180 (422)
Q Consensus       109 ~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~al~~~~t~~~~eR~~l~~~~~~~~~ig~~l~~  180 (422)
                      .  .+    ...+..+.    ....++.+++++.......++..+..+ +++|++..+..+...++|..+++
T Consensus       292 ~--~~----~~~~~~~~----~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~g~~~g~~~~~~~~~~~igP  352 (352)
T PF07690_consen  292 L--LP----FSSSPVWL----IIALFLIGFGFGIVFPILFSLIQELVP-PEYRGTAFGLFNSIGSLGGIIGP  352 (352)
T ss_dssp             C--SH----HHCHHHHH----HHHHHHHHHHHHHHCHHHHHHHHCCCH-TCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             H--HH----HhhhHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHHHHHHHHHCC
Confidence            2  11    01111211    112345778888888889999999875 68999999999988888887653

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=98.33  E-value=2.3e-05  Score=80.08  Aligned_cols=159  Identities=14%  Similarity=0.131  Sum_probs=108.8

Q ss_pred             eeeeeeeccchhHHHHHHHHHHHHHHHHHHh-CCChhHHHHHHHHHHHHhhhhhhhhhhhhcccCCc--hhHHHHHHHHH
Q 014600           24 WSVLYYGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHF--KIWHGAGSVLV  100 (422)
Q Consensus        24 ~~~~~y~~g~~~~~~~~~~~~~~l~~f~t~~-gls~~~~g~i~~i~~l~~ai~~p~~G~lsDr~Grr--rp~ll~g~i~~  100 (422)
                      ++...|-++.+..+-..+.+.++...|.+++ |++..+...+..+..+...+...+.|++.||+|.|  |. ++.+....
T Consensus       281 ~~~~~fLia~~l~~dg~~ti~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~-l~~~l~~~  359 (477)
T PF11700_consen  281 RQLFLFLIAYFLYSDGVNTIISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRT-LLISLILW  359 (477)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHH-HHHHHHHH
Confidence            3445565565544444555667888999987 99999999999999999999999999999999977  55 43433333


Q ss_pred             -HHHHHHhhcCccCccccCCccchhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCccchhhHHHHHHHHHHHHHHHH
Q 014600          101 -AVSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSL  179 (422)
Q Consensus       101 -~i~~~~lf~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~al~~~~t~~~~eR~~l~~~~~~~~~ig~~l~  179 (422)
                       .+....++- ..|...  ..+..+.  .| ++.++.++..+..+....++.+++.|+ ++.+...+.....+-..+.++
T Consensus       360 ~~i~~~g~~G-~~~~~~--g~~~~~~--f~-~~a~~~G~~~G~~qs~sRs~~~~LiP~-g~e~efFgly~i~gk~ss~lG  432 (477)
T PF11700_consen  360 IIIPLYGLFG-FWPSFF--GLKSPWE--FW-VLAVLIGLFMGGIQSASRSLFSRLIPP-GREAEFFGLYAITGKASSWLG  432 (477)
T ss_pred             HHHHHHHHHH-hhhccc--CcccHHH--HH-HHHHHHHHHhhhHHHHHHHHHHHhCCC-chhhHHHHHHHHHHHHHHHHH
Confidence             223222220 011000  0112222  22 234568888888999999999999984 556888998888888888888


Q ss_pred             HHHHHHHHhhc
Q 014600          180 YAIAFIVFSVS  190 (422)
Q Consensus       180 ~~~~~~l~~~~  190 (422)
                      +.+.+.+.+..
T Consensus       433 Pll~g~i~~~t  443 (477)
T PF11700_consen  433 PLLFGLITDAT  443 (477)
T ss_pred             HHHHHHHHHHh
Confidence            87776666543

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=98.31  E-value=2.1e-05  Score=75.54  Aligned_cols=183  Identities=12%  Similarity=0.043  Sum_probs=124.3

Q ss_pred             ceeeeeeeccch--hHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHhhhhhhhhhhhhcccCCchhHHHHHHHHH
Q 014600           23 RWSVLYYGSGHM--LNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLV  100 (422)
Q Consensus        23 ~~~~~~y~~g~~--~~~~~~~~~~~~l~~f~t~~gls~~~~g~i~~i~~l~~ai~~p~~G~lsDr~Grrrp~ll~g~i~~  100 (422)
                      ++++.++-+.-+  .++..++....++|.++.|.|+|+.+.|.+.++..+........+-.+.+|...+||+.+.....+
T Consensus       205 w~~~~aW~vtLfmGlqS~~~Y~~~~WLP~ili~~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~  284 (395)
T COG2807         205 WRSPLAWQVTLFMGLQSLLYYIVIGWLPAILIDRGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLM  284 (395)
T ss_pred             ccCchhHHHHHHHHhhHHHHHHHHHHHHHHHHHcCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHH
Confidence            445555555532  245666777789999999999999999999999999999999999999999888899887777777


Q ss_pred             HHHHHHhhcCccCccccCCccchhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCccchhhHHHHHHHHHHHHHHHHH
Q 014600          101 AVSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLY  180 (422)
Q Consensus       101 ~i~~~~lf~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~al~~~~t~~~~eR~~l~~~~~~~~~ig~~l~~  180 (422)
                      .+++..+.+  .|     ....    +.+.   ++++++.+....-...++.+.++|+++-.+++++.+..+++=...++
T Consensus       285 l~G~~G~~~--~P-----~~~~----~lw~---~llG~G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP  350 (395)
T COG2807         285 LVGLVGLLL--AP-----GQLP----ILWA---LLLGLGQGGAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGP  350 (395)
T ss_pred             HHHHHHHHH--hh-----hhHH----HHHH---HHHhCccchHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhh
Confidence            777665432  13     2111    1221   25666666555556778888899999999999987666555444444


Q ss_pred             HHHHHHHhhccCCCCCchHHHHHHHHHHHHHHHHHHHhhhhccccCcc
Q 014600          181 AIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPR  228 (422)
Q Consensus       181 ~~~~~l~~~~~~~g~~~~~~~~~~~~~i~~~i~~i~~~i~~~~~~E~~  228 (422)
                      .+.+.+-+.         ..+|+..........++..+..+..-|++.
T Consensus       351 ~l~G~lhDa---------~gsw~~~~~~l~~~~i~m~i~Gl~a~r~~~  389 (395)
T COG2807         351 WLFGFLHDA---------TGSWSAPLVLLALATLLMLIFGLRAGRNRY  389 (395)
T ss_pred             hhHhHHHHh---------cCChHHHHHHHHHHHHHHHHHHhhcchhHH
Confidence            333333222         235666655555555555555555555543

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=98.30  E-value=1.5e-05  Score=79.03  Aligned_cols=144  Identities=13%  Similarity=0.048  Sum_probs=84.5

Q ss_pred             eeeeeccchhHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHhhhhhhhhhhhhccc---CCchhHHHHHHHHHHH
Q 014600           26 VLYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRF---GHFKIWHGAGSVLVAV  102 (422)
Q Consensus        26 ~~~y~~g~~~~~~~~~~~~~~l~~f~t~~gls~~~~g~i~~i~~l~~ai~~p~~G~lsDr~---Grrrp~ll~g~i~~~i  102 (422)
                      .+......+.....+....+|+|.|+++.|.+.. .+....+..+...+.   .|+++||.   |||+.+........++
T Consensus       194 ~~~~~~~~~~~~~~~~~~~~wlp~~L~~~g~s~~-~~~~~~l~~~~g~~g---~~~~~d~~~r~~~r~~~~~~~~~~~a~  269 (368)
T TIGR00903       194 LWIIGAILGFGVALFDNLAIWLEAALRPAGLEDI-AGDAVALAILAGLIG---VAVIPDRVARAGLRSIYIRAAALLIAA  269 (368)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCChH-HHHHHHHHHHHHHHH---HHHhhHHhhhhhhHHHHHHHHHHHHHH
Confidence            3444445555566666677899999987788765 666666666666655   46777765   4445444333333333


Q ss_pred             HHHHhhcCccCccccCCccchhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCccchhhHHHHHHHHHHHHHHHHHHH
Q 014600          103 SFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAI  182 (422)
Q Consensus       103 ~~~~lf~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~al~~~~t~~~~eR~~l~~~~~~~~~ig~~l~~~~  182 (422)
                      ...++..       ..  +.... +..   ..+.+.+.........++.+|..+ ++.|++..++.+..+.+|++.++.+
T Consensus       270 ~~~~~~~-------~~--~~~~~-~~~---~~l~~~~~~~~~~~~~~~~~~~~p-~~~rgt~~G~~~~~g~~~~~~~~~~  335 (368)
T TIGR00903       270 FFLALAF-------EL--NRLAL-FAF---IGIAGLLMLPAYAIIMDWIGKFCD-KELHGKAAGAIGFTSRAISVALALA  335 (368)
T ss_pred             HHHHHHH-------cc--ccHHH-HHH---HHHHHHhhhhhHHHHHHHHHHhcc-hhhcCcccchhhHHHHHHHHHHHHH
Confidence            3222111       11  11111 111   112333333333446788899886 6799999999999999998887766


Q ss_pred             HHHHH
Q 014600          183 AFIVF  187 (422)
Q Consensus       183 ~~~l~  187 (422)
                      .+.++
T Consensus       336 ~~~~~  340 (368)
T TIGR00903       336 AMLFI  340 (368)
T ss_pred             HHHHh
Confidence            55444

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.29  E-value=5.7e-06  Score=83.68  Aligned_cols=166  Identities=16%  Similarity=0.081  Sum_probs=113.8

Q ss_pred             HHHHHHHHHhCCChhHHHHHHHHHHHHhhhhhhhhhhhhcccCCchhHHHHHHHHHHHHHHHhhcCccCccccCCccchh
Q 014600           45 TYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKV  124 (422)
Q Consensus        45 ~~l~~f~t~~gls~~~~g~i~~i~~l~~ai~~p~~G~lsDr~Grrrp~ll~g~i~~~i~~~~lf~~~~p~~~~~~~~~~~  124 (422)
                      .|-..++.+.|++...+-.+.....++..+...+...+.||.||| |.++.+...+.+...++..   ........+.  
T Consensus       291 ~Yst~i~~~aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~~gRR-pLll~~~~~~~~~~~~~~~---~~~l~~~~~~--  364 (485)
T KOG0569|consen  291 FYSTSIFKTAGFTPEEAQYANLGIGIVNLLSTLVSPFLIDRLGRR-PLLLISLSLMAVALLLMSI---ALFLSNSFGS--  364 (485)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-HHHHHHHHHHHHHHHHHHH---HHHHHHHhhh--
Confidence            455555666699999999999999999999999999999999976 4466777777666544432   1001111111  


Q ss_pred             hhHHHH-HHH-HHHHHHHHHHHhh-hhhhhhhccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchHHH
Q 014600          125 ETISYC-VFA-AIFNVGWAATQVA-HMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQ  201 (422)
Q Consensus       125 ~~~~~~-~~~-~l~~~~~~~~~~p-~~al~~~~t~~~~eR~~l~~~~~~~~~ig~~l~~~~~~~l~~~~~~~g~~~~~~~  201 (422)
                       ...|. ++. +++...++.-..| -+-+.+|+.+ ++.|..+.++......+.+++.....+|+-+.++         +
T Consensus       365 -~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~-~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g---------~  433 (485)
T KOG0569|consen  365 -WLSYLCIAAIFLFIISFAIGPGPIPWFIGAELFP-QSARSAAQSVATAVNWLSNFIVGFAFPPLQNVIG---------P  433 (485)
T ss_pred             -HHHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---------c
Confidence             12232 222 3455556543222 2456889886 7899999999999999999888877777665543         1


Q ss_pred             HHHHHHHHHHHHHHHHhhhhccccCccc
Q 014600          202 YRWIAYSSIFIGCCFVGIFLSRTEEPRL  229 (422)
Q Consensus       202 ~~~~~~i~~~i~~i~~~i~~~~~~E~~~  229 (422)
                        ..++.+.+.++++.+..++.+||.+.
T Consensus       434 --~~filF~i~~~~~~i~~~~~lPETkg  459 (485)
T KOG0569|consen  434 --YVFILFVIPLAIFLIYLYRYLPETKG  459 (485)
T ss_pred             --hhhHHHHHHHHHHHHHHHHhCcccCC
Confidence              35666777788888888999999763

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=98.26  E-value=2.8e-05  Score=76.60  Aligned_cols=124  Identities=16%  Similarity=0.096  Sum_probs=79.3

Q ss_pred             HHHHHHHHHHHHHHh-CCChhHHHHHHHHHHHHhhhhhhhhhhhhcccCCchhHHHHHHHHHHHHHHHhhcCccCccccC
Q 014600           40 AACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILS  118 (422)
Q Consensus        40 ~~~~~~~l~~f~t~~-gls~~~~g~i~~i~~l~~ai~~p~~G~lsDr~Grrrp~ll~g~i~~~i~~~~lf~~~~p~~~~~  118 (422)
                      ......+.+.++++. |.++.++|.+.....+...+..++.|+++||+||||.. ..+.....++..++..  .+   ..
T Consensus       222 ~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~-~~~~~~~~~~~~~~~~--~~---~~  295 (385)
T TIGR00710       222 FFAFFSGAPFVYIDIMGVSPSVFGLLFALNIIAMIFGGFLNGRFIKKWGAKSLL-RMGLILFAVSAVLLEI--TA---IL  295 (385)
T ss_pred             HHHHHHcChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHH-HHHHHHHHHHHHHHHH--HH---Hh
Confidence            334455678888876 99999999999999999999999999999999998874 4555555555444331  01   00


Q ss_pred             CccchhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCccchhhHHHHHHHHHHH
Q 014600          119 TSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMV  174 (422)
Q Consensus       119 ~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~al~~~~t~~~~eR~~l~~~~~~~~~i  174 (422)
                      ..... .  .......+.+.+.+.......+...|..  +++|++..+..+.....
T Consensus       296 ~~~~~-~--~~~~~~~~~g~~~~~~~~~~~~~~~~~~--~~~~g~~~~~~~~~~~~  346 (385)
T TIGR00710       296 GLGSW-A--MIIGPMMFVGIGNSMISSIAMAYALEDF--PHVAGTASALFGTLRLV  346 (385)
T ss_pred             ccchH-H--HHHHHHHHHHHHHHHHHHHHHHHHhccC--cccchHHHHHHHHHHHH
Confidence            00111 1  1111123455666655555555555543  46788888877665544

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=98.25  E-value=1.1e-05  Score=80.66  Aligned_cols=131  Identities=15%  Similarity=0.107  Sum_probs=87.6

Q ss_pred             HHHHHHHHHHhCCChhHHHHHHHHHHHHhhhhhhhhhhhhc-ccCCchhHHHHHHHHHHHHHHHhhcCccCccccCCccc
Q 014600           44 FTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELID-RFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTL  122 (422)
Q Consensus        44 ~~~l~~f~t~~gls~~~~g~i~~i~~l~~ai~~p~~G~lsD-r~Grrrp~ll~g~i~~~i~~~~lf~~~~p~~~~~~~~~  122 (422)
                      ..++|.|.++.+.++..+|.+.++..+.........+++.| |++.+|. +..+.+..+++..++..       .++  .
T Consensus       228 ~~~~p~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~-~~~~~~~~~~~~~~l~~-------~~~--~  297 (400)
T PRK11646        228 MLMLPIMVNDIAGSPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHR-LMAGLLIMSLSMFPIGM-------VSN--L  297 (400)
T ss_pred             HHhhhhhHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHH-HHHHHHHHHHHHHHHHH-------hhh--H
Confidence            45678888887447788898888877766655555567776 4655554 44566666666543321       111  1


Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 014600          123 KVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSV  189 (422)
Q Consensus       123 ~~~~~~~~~~~~l~~~~~~~~~~p~~al~~~~t~~~~eR~~l~~~~~~~~~ig~~l~~~~~~~l~~~  189 (422)
                      . .   ..+...+++.+......+..++..+..+ +++|++..+..+....+|..+++.+.+.+.+.
T Consensus       298 ~-~---~~~~~~l~~~g~~~~~p~~~~~~~~~~p-~~~~g~~~g~~~~~~~~g~~ig~~l~G~l~~~  359 (400)
T PRK11646        298 Q-Q---LFTLICLFYIGSIIAEPARETLSASLAD-ARARGSYMGFSRLGLALGGAIGYIGGGWLFDL  359 (400)
T ss_pred             H-H---HHHHHHHHHHHHHHHHccHHHHHHhcCC-cccchhhhhHHHHHHHHHHHhcccchHHHHHH
Confidence            1 1   1111234666666777777888888875 68999999999998899999988888777764

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=98.24  E-value=3.8e-05  Score=76.70  Aligned_cols=130  Identities=21%  Similarity=0.142  Sum_probs=84.2

Q ss_pred             HHHHHHHHHHHh-CCChhHHHHHHHHHHHHhhhhhhhhhhhhcccCCchhHHHHHHHHHHHH-HHHhhcCccCccccCCc
Q 014600           43 WFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVS-FSSVFGGCMPCRILSTS  120 (422)
Q Consensus        43 ~~~~l~~f~t~~-gls~~~~g~i~~i~~l~~ai~~p~~G~lsDr~Grrrp~ll~g~i~~~i~-~~~lf~~~~p~~~~~~~  120 (422)
                      ..+++++++.+. |+++..+|.++....+...+..++.|++.||.+ |+..+. +.....+. ..+...       .  .
T Consensus       235 ~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r~~-~~~l~~-~~~~~~~~~~~l~~~-------~--~  303 (394)
T PRK10213        235 FFTYIRPVYMNLAGFGVDGLTLVLLSFGIASFVGTSLSSFILKRSV-KLALAG-APLVLAVSALVLTLW-------G--S  303 (394)
T ss_pred             HHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhccc-hhHHHH-HHHHHHHHHHHHHHH-------h--h
Confidence            345664545554 999999999999999999999999999999954 343333 33332332 222221       1  1


Q ss_pred             cchhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 014600          121 TLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSV  189 (422)
Q Consensus       121 ~~~~~~~~~~~~~~l~~~~~~~~~~p~~al~~~~t~~~~eR~~l~~~~~~~~~ig~~l~~~~~~~l~~~  189 (422)
                      +.+ .  .+ ...++++++++..+.+..+++.+.++  +++++..+.......+|..+++.+++.+.+.
T Consensus       304 ~~~-~--~~-~~~~l~G~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~lg~~~G~~l~G~l~~~  366 (394)
T PRK10213        304 DKI-V--AT-GVAIIWGLTFALVPVGWSTWITRSLA--DQAEKAGSIQVAVIQLANTCGAAIGGYALDN  366 (394)
T ss_pred             hHH-H--HH-HHHHHHHHHHHhhhHHHHHHHHHHCc--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            111 1  11 12346788888888888888887764  4556666666667778888888887777653

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=98.23  E-value=0.00085  Score=71.15  Aligned_cols=170  Identities=14%  Similarity=0.061  Sum_probs=106.8

Q ss_pred             HHHHHHHHHHh-CCChhHHHHHHHHHHHHhhhhhhhhhhhhc-ccCCchhHHHHHHHHHHHHHHHhhcCccCccccCCcc
Q 014600           44 FTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELID-RFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTST  121 (422)
Q Consensus        44 ~~~l~~f~t~~-gls~~~~g~i~~i~~l~~ai~~p~~G~lsD-r~Grrrp~ll~g~i~~~i~~~~lf~~~~p~~~~~~~~  121 (422)
                      .+-+..|+++. |.+.+.+..+.....-+.-+...+.|+++| ++||+|. ++.+.++..++..++..+..|    +...
T Consensus         7 ~aiLvlYl~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~t-Il~~~ii~~lG~~llai~a~~----~~~~   81 (654)
T TIGR00926         7 RTILVLYFLNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKT-ILYLSIVYVVGHALLSFGAIP----SSGH   81 (654)
T ss_pred             HHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH-HHHHHHHHHHHHHHHHhccCc----cccc
Confidence            34566777776 999999999988888888888899999999 4899887 556777777777665532222    1111


Q ss_pred             chhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCcc--chhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchH
Q 014600          122 LKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNST--SRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLE  199 (422)
Q Consensus       122 ~~~~~~~~~~~~~l~~~~~~~~~~p~~al~~~~t~~~~--eR~~l~~~~~~~~~ig~~l~~~~~~~l~~~~~~~g~~~~~  199 (422)
                      .......+ +...+..+|.+.+-....+...|..++.+  +|.+...+-....++|++++..+...+-...+.+|   ..
T Consensus        82 ~~~~~~~l-~gLaLia~G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg---~~  157 (654)
T TIGR00926        82 PLHDLLDL-LGLALIALGTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFG---CQ  157 (654)
T ss_pred             chHHHHHH-HHHHHHHhhccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc---cC
Confidence            11111122 12234556667777888899998876432  35667777777788887776655433221211111   12


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhc
Q 014600          200 NQYRWIAYSSIFIGCCFVGIFLS  222 (422)
Q Consensus       200 ~~~~~~~~i~~~i~~i~~~i~~~  222 (422)
                      .+|...+.+.++..++..++...
T Consensus       158 ~~~~~aF~i~~i~m~ia~lvf~~  180 (654)
T TIGR00926       158 DCYPLAFGVPAILMILALIVFMA  180 (654)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHH
Confidence            36777777766666665555443

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=98.23  E-value=4.3e-05  Score=76.43  Aligned_cols=58  Identities=26%  Similarity=0.196  Sum_probs=42.8

Q ss_pred             HHHHHHHHHh-CCChhHHHHHHHHH-HHHhhhhhhhhhhhhcccCCchhHHHHHHHHHHHH
Q 014600           45 TYLLLFLTDI-GLSPRGAAAVMLSG-QIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVS  103 (422)
Q Consensus        45 ~~l~~f~t~~-gls~~~~g~i~~i~-~l~~ai~~p~~G~lsDr~Grrrp~ll~g~i~~~i~  103 (422)
                      .+.++|+.+. |+++.++|.++... .+...+..++.|++.||+||||... .+.....+.
T Consensus       230 ~~~~~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~~l~-~~~~~~~l~  289 (402)
T PRK11902        230 SLSTTFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRLGLYRSLM-LFGVLQAVS  289 (402)
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHH-HHHHHHHHH
Confidence            4555677776 99999999998654 4457788899999999999988743 444444433

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=98.20  E-value=2.2e-05  Score=89.14  Aligned_cols=153  Identities=10%  Similarity=-0.011  Sum_probs=102.7

Q ss_pred             eeccchhHHHHHHHHHHHHHHHHHHh-CCChhHHHHHHHHHHHHhhhhhhhhhhhhcccCCchhHHHHHHHHHHHHHH-H
Q 014600           29 YGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFS-S  106 (422)
Q Consensus        29 y~~g~~~~~~~~~~~~~~l~~f~t~~-gls~~~~g~i~~i~~l~~ai~~p~~G~lsDr~Grrrp~ll~g~i~~~i~~~-~  106 (422)
                      ..++.+...+......++++.|+++. |.++...|++++...+...+..++.|+++||.++++.. ..+.+..++... +
T Consensus       230 ~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~-~~~~~~~~~~~~~l  308 (1140)
T PRK06814        230 AILGISWFWLVGAVVLSQLPLLAKETLGGDENVATLFLAVFSVGVAVGSFLASKLSEGRITLLYV-PIGALLMGLFGLDL  308 (1140)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCceeeeee-hHHHHHHHHHHHHH
Confidence            34444444555556667899999998 99999999999999999999999999999987776653 334444433332 2


Q ss_pred             hhcC-cc--Ccc-------ccCCccchhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCccchhhHHHHHHHHHHHHH
Q 014600          107 VFGG-CM--PCR-------ILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVAN  176 (422)
Q Consensus       107 lf~~-~~--p~~-------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~al~~~~t~~~~eR~~l~~~~~~~~~ig~  176 (422)
                      .+.. ..  +..       +....+.+ .   ..+..++++++.++.+++..+++.+.++ +++|+++.+..+....+|.
T Consensus       309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~g~~~~~~~~~~~~~~~~~~p-~~~~G~v~g~~~~~~~~~~  383 (1140)
T PRK06814        309 AFASSSVPAEPAQLKSILVFLSKRHGW-R---ILIDLFGLAAAGGLYIVPLFAALQAWAN-PAHRARVIAANNVLNAAFM  383 (1140)
T ss_pred             HhcccccccccccccchhhhhcccccH-H---HHHHHHHHHHHHHHhHHHHHHHHHhhCC-cccceeeeHHHHHHHHHHH
Confidence            1210 00  000       00001111 1   1222345778888888999999999876 6899999999998888888


Q ss_pred             HHHHHHHHHHH
Q 014600          177 LSLYAIAFIVF  187 (422)
Q Consensus       177 ~l~~~~~~~l~  187 (422)
                      .+++.+.+.+.
T Consensus       384 ~ig~~~~g~l~  394 (1140)
T PRK06814        384 VAGTIILALLQ  394 (1140)
T ss_pred             HHHHHHHHHHH
Confidence            88777665554

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=98.20  E-value=2.1e-05  Score=77.02  Aligned_cols=143  Identities=12%  Similarity=0.002  Sum_probs=88.3

Q ss_pred             hhHHHHHHHHHHHHHHHHHHh-CCChhHHHHHHHHHHHHhhhhhhhhhhhhcccCCchhHHHH--HHHHHHHHHHHhhcC
Q 014600           34 MLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGA--GSVLVAVSFSSVFGG  110 (422)
Q Consensus        34 ~~~~~~~~~~~~~l~~f~t~~-gls~~~~g~i~~i~~l~~ai~~p~~G~lsDr~Grrrp~ll~--g~i~~~i~~~~lf~~  110 (422)
                      +...........+++.|+.+. |.++.+.+.+..+..+...+..++.|+++||+++||...+.  ......++....+. 
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~-  304 (379)
T TIGR00881       226 VFVYVVRTGILDWSPLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMALIIVSLLVYWL-  304 (379)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHhc-
Confidence            333444445567889999887 99999999999999999999999999999986543332221  11222222222121 


Q ss_pred             ccCccccCCccchhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014600          111 CMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFS  188 (422)
Q Consensus       111 ~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~al~~~~t~~~~eR~~l~~~~~~~~~ig~~l~~~~~~~l~~  188 (422)
                       .|     ..+..    ...+...+.+...........++..|..+ +++|++..++.+....+|+.+++.+.+.+.+
T Consensus       305 -~~-----~~~~~----~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~  371 (379)
T TIGR00881       305 -NP-----AANPL----MDLICLFALGFLVYGPQMLIGVIASELAP-KKAAGTAAGFVGFFAYLGGILAGLPLGYLAD  371 (379)
T ss_pred             -Cc-----chhHH----HHHHHHHHHHHHHhhhhHHHHHHHHHhcC-cchhHHHHHHHHHhhhhhhhhhhhhHHHHHH
Confidence             11     11111    11111123333333333334566777765 6789999999988888888888777666654

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=98.19  E-value=0.00011  Score=73.28  Aligned_cols=127  Identities=10%  Similarity=-0.004  Sum_probs=86.4

Q ss_pred             HHHHHHHHHh-CCChhHHHHHHHHHHHHhhhhhhhhhhhhcccCCchhHHHHHHHHHHHHHHHhhcCccCccccCCccch
Q 014600           45 TYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLK  123 (422)
Q Consensus        45 ~~l~~f~t~~-gls~~~~g~i~~i~~l~~ai~~p~~G~lsDr~Grrrp~ll~g~i~~~i~~~~lf~~~~p~~~~~~~~~~  123 (422)
                      ..++.|..+. |.++.+.|.++....+...+..++.|++.||+++||. +..+. ..++...++.       +.  .+.+
T Consensus       226 ~~~~~~~~~~lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~~~~~~-~~~g~-~~~~~~~~~~-------~~--~~~~  294 (393)
T PRK11195        226 FLVLAWAPVALGITLNQPAYLQAVVAIGIAVGAGAAARLVTLETVLRV-LPAGI-LMGLVVLLMA-------LQ--HSLL  294 (393)
T ss_pred             HHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccch-HHHHH-HHHHHHHHHH-------HH--hHHH
Confidence            3445667776 9999999999999999999999999999999998775 44443 3333222111       01  1111


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCccchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 014600          124 VETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIV  186 (422)
Q Consensus       124 ~~~~~~~~~~~l~~~~~~~~~~p~~al~~~~t~~~~eR~~l~~~~~~~~~ig~~l~~~~~~~l  186 (422)
                       .   ..+...+.+++.+..++|.++...+..+++..|++..+..+...+++..++..+...+
T Consensus       295 -~---~~~~~~~~G~~~g~~~~~~~~~~q~~~~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~  353 (393)
T PRK11195        295 -P---AYPLLILIGALGGFFVVPMNALLQHRGHVLVGAGHSIAVQNFNENLAMLLMLGLYSLL  353 (393)
T ss_pred             -H---HHHHHHHHHHhhhhhhhhHHHHHHhhCcccccchhHHHHHhHHHHHHHHHHHHHHHHH
Confidence             1   1122235777778888889888877543222378999998888888888877666533

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=98.17  E-value=4.5e-05  Score=75.22  Aligned_cols=55  Identities=16%  Similarity=0.207  Sum_probs=45.8

Q ss_pred             HHHHHHHHHHh-CCChhHHHHHHHHHHHHhhhhhhhhhhhhcccCCchhHHHHHHHH
Q 014600           44 FTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVL   99 (422)
Q Consensus        44 ~~~l~~f~t~~-gls~~~~g~i~~i~~l~~ai~~p~~G~lsDr~Grrrp~ll~g~i~   99 (422)
                      ..+.+.++.+. |.++.+.|.+..+..+...+..++.|++.||+||||.+. .+...
T Consensus       214 ~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~-~~~~~  269 (377)
T PRK11102        214 LTAGPFVYIELNGVSPQNFGYYFALNIVFLFVMTIINSRFVRRVGALNMLR-FGLWI  269 (377)
T ss_pred             HHcCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHH-HHHHH
Confidence            34456777776 999999999999999999999999999999999988744 44443

>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.16  E-value=5.4e-05  Score=79.51  Aligned_cols=242  Identities=11%  Similarity=0.066  Sum_probs=150.4

Q ss_pred             HHHHHHHHHHHHHh----CCChhHHHHHHHHHHHHhhhhhhhhhhhhcccCCchhHHHHHHHHHHHHHHHhhcC--c-cC
Q 014600           41 ACWFTYLLLFLTDI----GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGG--C-MP  113 (422)
Q Consensus        41 ~~~~~~l~~f~t~~----gls~~~~g~i~~i~~l~~ai~~p~~G~lsDr~Grrrp~ll~g~i~~~i~~~~lf~~--~-~p  113 (422)
                      .+...|+..-.|.+    +++..+.|++....-+-+.+...++.|..-|. +|-.|+-+|.++++++.++.-.|  . -|
T Consensus       110 ~l~~~y~~s~IttiErRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~-HrPr~Ig~G~~~m~lgsll~alPHf~~~~  188 (735)
T KOG3626|consen  110 GLYVGYFNSVITTIERRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSRG-HRPRWIGIGLVLMGLGSLLFALPHFFSGP  188 (735)
T ss_pred             HhhhhhhhhhhhhhhhhcCCCCCcceeEeeecccchhhhhHhHHHhcccc-CccceeeechhHHHHHHHHHhChHHhcCc
Confidence            33345555555542    88889999998888888888888888888774 44557888999998887665432  0 00


Q ss_pred             c----------cccC---------------------C-----ccchhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhccCC
Q 014600          114 C----------RILS---------------------T-----STLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLN  157 (422)
Q Consensus       114 ~----------~~~~---------------------~-----~~~~~~~~~~~~~~~l~~~~~~~~~~p~~al~~~~t~~  157 (422)
                      .          .-.+                     +     .+..+.++.+++..++.+++-+    |..++.....+|
T Consensus       189 y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~T----pi~tlGisYiDD  264 (735)
T KOG3626|consen  189 YEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGAT----PIFTLGISYIDD  264 (735)
T ss_pred             chhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCC----CCccCCCccccc
Confidence            0          0000                     0     0111122233322234455544    555555444444


Q ss_pred             ---ccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCCC-------CCc--hHHHHHHHHHHHHHHHHHHHhhhhcccc
Q 014600          158 ---STSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKT-------HAD--LENQYRWIAYSSIFIGCCFVGIFLSRTE  225 (422)
Q Consensus       158 ---~~eR~~l~~~~~~~~~ig~~l~~~~~~~l~~~~~~~g-------~~~--~~~~~~~~~~i~~~i~~i~~~i~~~~~~  225 (422)
                         +++-....++......+|.+++..++........+.|       ..|  |.-.|..-+++.+.+.++..+..+++-|
T Consensus       265 nvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~~~a~p~f~fPk  344 (735)
T KOG3626|consen  265 NVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALLLFSAVPLFFFPK  344 (735)
T ss_pred             cccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhCcc
Confidence               2333456677777777787777777766655432221       122  2234555577788888887777777776


Q ss_pred             Cccccc------------ccC----CC-------cchhhhHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhccC
Q 014600          226 EPRLKM------------GLR----GN-------SHARISWAYWFKKILYYQVALVYMLTRLVVNVSQAYLAFYVINDLR  282 (422)
Q Consensus       226 E~~~~~------------~~~----~~-------~~~~~~~~~~~~n~~f~~~~~~~~~~~~~~~~~~~y~~~y~~~~~~  282 (422)
                      |.+.+.            +++    ++       +++.+.++.+++||-|...++...+......+..+|.|+|++.+.+
T Consensus       345 ~lp~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~ikdfp~s~~~ll~N~if~~~~l~~~~~~~~~~G~~tFlPKyLE~Qfg  424 (735)
T KOG3626|consen  345 ELPKSQKRKRARDLHVLKTESGGAKSDKTFGKKIKDFPKSIKRLLSNPIFMLVVLASVIESLAITGYITFLPKYLETQFG  424 (735)
T ss_pred             cCccccccchhhhhcccccccccccCCcchhhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhHHHhhHHHHHHHcC
Confidence            654211            000    11       1234567889999999888888888888899999999999999999


Q ss_pred             ccchh
Q 014600          283 MGQSA  287 (422)
Q Consensus       283 l~~~~  287 (422)
                      .+++.
T Consensus       425 ~sas~  429 (735)
T KOG3626|consen  425 ISASL  429 (735)
T ss_pred             CCHHH
Confidence            88765

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.14  E-value=3.6e-05  Score=78.29  Aligned_cols=179  Identities=14%  Similarity=0.063  Sum_probs=113.2

Q ss_pred             eeeeccchhHHHHHHHHHHHHHHHHHHh-CCChhHHHHHHHHHHHHhhhhhhhhhhhhcccC--------CchhHHHHHH
Q 014600           27 LYYGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFG--------HFKIWHGAGS   97 (422)
Q Consensus        27 ~~y~~g~~~~~~~~~~~~~~l~~f~t~~-gls~~~~g~i~~i~~l~~ai~~p~~G~lsDr~G--------rrrp~ll~g~   97 (422)
                      ++--+..++.+....+...|+|.|+.|+ |++....|+..++..+...+...+.|+++||.=        +||.+--++.
T Consensus       261 wai~~~~f~~~~~~~~l~~y~PtY~~~VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l~~~~ls~t~~rkifn~i~~  340 (466)
T KOG2532|consen  261 WAIWISAFGGNWGFYLLLTYLPTYLKEVLGFDVRETGFLSALPFLAMAIVKFVAGQLSDRLTFRILSETTVRKIFNTIAF  340 (466)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCchHhHHHHHHhHHH
Confidence            4556677888888888899999999999 999999999999999999999999999999632        3444433444


Q ss_pred             HHHHHHHHHhhcCccCccccCCccchhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhccC-CccchhhHHHHHHHHHHHHH
Q 014600           98 VLVAVSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITL-NSTSRVVLTSCRNAFTMVAN  176 (422)
Q Consensus        98 i~~~i~~~~lf~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~al~~~~t~-~~~eR~~l~~~~~~~~~ig~  176 (422)
                      ...++.+..+-  .++     ....+...+.+.     ...+....+.+-.  .-...+ .|+.-+.+.+..+....+++
T Consensus       341 ~~~ai~l~~l~--~~~-----~~~~~~a~~~l~-----~~~~~~g~~~~Gf--~~~~~~~apq~a~~l~g~~~~~~~~~~  406 (466)
T KOG2532|consen  341 GGPAVFLLVLA--FTS-----DEHRLLAVILLT-----IAIGLSGFNISGF--YKNHQDIAPQHAGFVMGIINFVGALAG  406 (466)
T ss_pred             HHHHHHHHeee--ecC-----CCcchHHHHHHH-----HHHHHcccchhhh--HhhhhhccchHHHHHHHHHHHHHHHHH
Confidence            44444433321  112     112222222222     1122222222111  111122 34555678888888888777


Q ss_pred             HHHHHHHHHHHhhccCCCCCchHHHHHHHHHHHHHHHHHHHhhhhccccC
Q 014600          177 LSLYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEE  226 (422)
Q Consensus       177 ~l~~~~~~~l~~~~~~~g~~~~~~~~~~~~~i~~~i~~i~~~i~~~~~~E  226 (422)
                      ++++.+.+.++.       .+...+|++++.+.+.+.+++.++..++-+.
T Consensus       407 ~~~P~~vg~~~~-------~~t~~eW~~VF~i~a~i~~~~~i~f~~f~s~  449 (466)
T KOG2532|consen  407 FIAPLLVGIIVT-------DNTREEWRIVFLIAAGILIVGNIIFLFFGSG  449 (466)
T ss_pred             HHHHHheeeEeC-------CCCHHHHHHHHHHHHHHHHHhchheeEeecC
Confidence            776655443332       1246799999999998888887766555443

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=98.14  E-value=3.4e-05  Score=76.70  Aligned_cols=63  Identities=13%  Similarity=-0.010  Sum_probs=50.1

Q ss_pred             HHHHHHHHHh-CCChhHHHHHHHHHHHHhhhhhhhhhhhhcccCCchhHHHHHHHHHHHHHHHhh
Q 014600           45 TYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVF  108 (422)
Q Consensus        45 ~~l~~f~t~~-gls~~~~g~i~~i~~l~~ai~~p~~G~lsDr~Grrrp~ll~g~i~~~i~~~~lf  108 (422)
                      .+.+.++.+. |.++.+.|.+++...+...+..++.|+++||+||||.+ ..+.....++..++.
T Consensus       224 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r~g~~~~~-~~~~~~~~~~~~~~~  287 (392)
T PRK10473        224 NTSPVLLMEQMGFSRGEYAIIMALTAGVSMTVSFSTPFALGIFKPRTLM-LTSQVLFLAAGITLA  287 (392)
T ss_pred             HhCHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHH-HHHHHHHHHHHHHHH
Confidence            4456667666 99999999999999999999999999999999998874 456666666555443

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=98.13  E-value=2.6e-05  Score=80.50  Aligned_cols=172  Identities=11%  Similarity=-0.081  Sum_probs=88.0

Q ss_pred             HHHHHHHHHHhCCChhHHHH------------HHHHHHHHhhhhhhhhhhhhcccCCchhHHHHHHHHHHHHHHHhhcCc
Q 014600           44 FTYLLLFLTDIGLSPRGAAA------------VMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGC  111 (422)
Q Consensus        44 ~~~l~~f~t~~gls~~~~g~------------i~~i~~l~~ai~~p~~G~lsDr~Grrrp~ll~g~i~~~i~~~~lf~~~  111 (422)
                      ..+.|.++++.|++....+.            ...+..+...+...+.|+++||+|||+.. +.+....+++..++..  
T Consensus       308 ~~~~p~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~gRR~~l-~~~~~~~~~~~~~l~~--  384 (502)
T TIGR00887       308 NLNQKVILSAIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDIIGRKPIQ-LMGFFILTVLFFVLGF--  384 (502)
T ss_pred             ccccHHHHHHHcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhHH-HHHHHHHHHHHHHHHH--
Confidence            34566777666776542211            12233334444667889999999998874 4555555554433221  


Q ss_pred             cCccccCCccchhhhHHHHHHHHHHHHHHHH-HHhhhhhhhhhccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 014600          112 MPCRILSTSTLKVETISYCVFAAIFNVGWAA-TQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVS  190 (422)
Q Consensus       112 ~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~p~~al~~~~t~~~~eR~~l~~~~~~~~~ig~~l~~~~~~~l~~~~  190 (422)
                       .  ..+..... ....+.    ++...++. .......+.+|+.+ .+.|++..++.+..+.+|+++++.+.+.+.+..
T Consensus       385 -~--~~~~~~~~-~~~~~~----~~~~~~~~~~~~~~~~~~~E~~p-~~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~  455 (502)
T TIGR00887       385 -A--YNHLSTHG-FLAIYV----LAQFFANFGPNATTFIVPGEVFP-TRYRSTAHGISAASGKAGAIIGQFGFLYLAQHG  455 (502)
T ss_pred             -H--HHhcchhH-HHHHHH----HHHHHHhcCCCchhhhhhhccCc-hhHHHHHHHHHHHHhhhHHHHHHHHhhhhhccc
Confidence             0  00000111 111111    11111111 11223455688876 578999999999999999988877665554421


Q ss_pred             cCCCCCchHHHHHHHHHHHHHHHHHHHhhhhccccCcc
Q 014600          191 TAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPR  228 (422)
Q Consensus       191 ~~~g~~~~~~~~~~~~~i~~~i~~i~~~i~~~~~~E~~  228 (422)
                      +.....+...++...+.+++++.++..+. ++++||++
T Consensus       456 ~~~~~~~~~~~~~~~~~i~~~~~~~~~i~-~~~lpEt~  492 (502)
T TIGR00887       456 DPTKGYPTGIWMGHVLEIFALFMFLGILF-TLLIPETK  492 (502)
T ss_pred             cccccccccccchHHHHHHHHHHHHHHHH-heEeccCC
Confidence            10000000123334455555555555443 45668854

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>TIGR00901 2A0125 AmpG-related permease

Probab=98.12  E-value=3.1e-05  Score=75.85  Aligned_cols=132  Identities=11%  Similarity=0.057  Sum_probs=87.1

Q ss_pred             hhHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHH-HHhhhhhhhhhhhhcccCCchhHHHHHHHHHHHHHHHhhcCcc
Q 014600           34 MLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQ-IADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCM  112 (422)
Q Consensus        34 ~~~~~~~~~~~~~l~~f~t~~gls~~~~g~i~~i~~-l~~ai~~p~~G~lsDr~Grrrp~ll~g~i~~~i~~~~lf~~~~  112 (422)
                      +..........++++.|.++.|.++.++|.+..+.. +...+..++.|+++||+||||. +..+.+..++...+...  .
T Consensus       219 ~~~~~~~~~~~~~~~~~l~~~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~-l~~~~~~~~~~~~~~~~--~  295 (356)
T TIGR00901       219 VLYKLGDSAATVLTTLFLLDMGFSKEEIALVAKINGLLGAILGGLIGGIIMQPLNILYA-LLLFGIVQALTNAGFVW--L  295 (356)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHHHH-HHHHHHHHHHHHHHHHH--H
Confidence            334455555667888888888999999999887655 5667888999999999999888 44555655555443221  0


Q ss_pred             CccccCC-c--cchhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCccchhhHHHHHHHHH
Q 014600          113 PCRILST-S--TLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFT  172 (422)
Q Consensus       113 p~~~~~~-~--~~~~~~~~~~~~~~l~~~~~~~~~~p~~al~~~~t~~~~eR~~l~~~~~~~~  172 (422)
                      +...... .  ...+   ......++.+++.+..+.+..++..+.++ +|+|++..+..+...
T Consensus       296 ~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~~~~~~~~~p-~~~~g~~~g~~~~~~  354 (356)
T TIGR00901       296 ASNGHHDGITFPHLL---MLFLTITLEAVTGGLGTVAFVAFLSKLSN-PKFGATQMALLSSLS  354 (356)
T ss_pred             HhcCcccccccchHH---HHHHHHHHHHHHhHHHHHHHHHHHHHhcC-CCccHHHHHHHHHHH
Confidence            0000000 0  1111   11112235678888899999999999986 689999888765543

>PRK10429 melibiose:sodium symporter; Provisional

Probab=98.12  E-value=4.7e-05  Score=77.98  Aligned_cols=151  Identities=11%  Similarity=0.076  Sum_probs=95.4

Q ss_pred             ccchhHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHhhhhhhhhhhhhcccCCchhHHHHHHHHHHHHHHHhhcC
Q 014600           31 SGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGG  110 (422)
Q Consensus        31 ~g~~~~~~~~~~~~~~l~~f~t~~gls~~~~g~i~~i~~l~~ai~~p~~G~lsDr~Grrrp~ll~g~i~~~i~~~~lf~~  110 (422)
                      ...+..++......++.++|.+...-+....+.+..+..+...+..|+.++++||+||||.++ .+....+++...++. 
T Consensus       238 ~~~~~~~~~~~~~~~~~~y~~~y~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~-~~~~~~~~~~~~~~~-  315 (473)
T PRK10429        238 GMALAYNIASNIINGFAIYYFTYVIGDADLFPYYLSYAGAANLVTLILFPRLVKSLSRRILWA-GASIFPVLSCGVLLL-  315 (473)
T ss_pred             HHHHHHHHHHHHHhhheeeEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHH-HHHHHHHHHHHHHHH-
Confidence            334445555556666666555555335667777888777888899999999999999999865 444444444333221 


Q ss_pred             ccCccccCCccchhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCccc------hhhHHHHHHHHHHHHHHHHHHHHH
Q 014600          111 CMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTS------RVVLTSCRNAFTMVANLSLYAIAF  184 (422)
Q Consensus       111 ~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~al~~~~t~~~~e------R~~l~~~~~~~~~ig~~l~~~~~~  184 (422)
                       ..  +.+.. ..+.   ..+...+.+++.+..+....++++|..+..+.      .+...+......-+|..+++.+.+
T Consensus       316 -~~--~~~~~-~~~~---~~i~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g  388 (473)
T PRK10429        316 -MG--LAAPH-NALL---IVIAGILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIG  388 (473)
T ss_pred             -Hh--ccCch-hHHH---HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHH
Confidence             00  01111 1111   12223457788888888889999998753211      233677777888888888887777


Q ss_pred             HHHhhc
Q 014600          185 IVFSVS  190 (422)
Q Consensus       185 ~l~~~~  190 (422)
                      .+++..
T Consensus       389 ~~l~~~  394 (473)
T PRK10429        389 VVLGLI  394 (473)
T ss_pred             HHHHHc
Confidence            777654

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=98.12  E-value=3.3e-07  Score=94.88  Aligned_cols=242  Identities=10%  Similarity=0.066  Sum_probs=1.5

Q ss_pred             HHHHHHHHHHH----hCCChhHHHHHHHHHHHHhhhhhhhhhhhhcccCCchhHHHHHHHHHHHHHHHhhcCccCccccC
Q 014600           43 WFTYLLLFLTD----IGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILS  118 (422)
Q Consensus        43 ~~~~l~~f~t~----~gls~~~~g~i~~i~~l~~ai~~p~~G~lsDr~Grrrp~ll~g~i~~~i~~~~lf~~~~p~~~~~  118 (422)
                      .+.|...-.|.    .+++.++.|++.+.+-+...+...++.|+.+| |+|-.|+-+|.++++++.++.-   +|-...+
T Consensus        18 ~~g~~~~~lttiErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~-~hrprwig~g~~~~~~g~~l~~---lPhf~~~   93 (539)
T PF03137_consen   18 VSGYVNSSLTTIERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGR-GHRPRWIGIGALLMGLGSLLFA---LPHFLSG   93 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhh-cCCcceeeecHHHHHHHHHHHh---ccHhhcC
Confidence            34444444443    49999999999999999999999999999987 5667789899999998875533   3421110


Q ss_pred             C-----c-------------------------------cchhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhccCC---cc
Q 014600          119 T-----S-------------------------------TLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLN---ST  159 (422)
Q Consensus       119 ~-----~-------------------------------~~~~~~~~~~~~~~l~~~~~~~~~~p~~al~~~~t~~---~~  159 (422)
                      .     .                               ........|..+.++-++..++-..|.+++.....+|   ++
T Consensus        94 ~y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~  173 (539)
T PF03137_consen   94 PYSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDDNVSKK  173 (539)
T ss_dssp             ----------------------------------------------------------SSS-------------------
T ss_pred             CCccccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeeccccccc
Confidence            0     0                               0000000111111233344445555666666655554   22


Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCC----------Cch--HHHHHHHHHHHHHHHHHHHhhhhccccCc
Q 014600          160 SRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTH----------ADL--ENQYRWIAYSSIFIGCCFVGIFLSRTEEP  227 (422)
Q Consensus       160 eR~~l~~~~~~~~~ig~~l~~~~~~~l~~~~~~~g~----------~~~--~~~~~~~~~i~~~i~~i~~~i~~~~~~E~  227 (422)
                      +-....++......+|..++..+++..+....+.+.          .|.  .-+|-.-+++.+.+.++..+..+.+-|+-
T Consensus       174 ~splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~~l~aipl~~FPk~l  253 (539)
T PF03137_consen  174 NSPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILLFLSAIPLFFFPKKL  253 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cCccchhhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHcCCccC
Confidence            334455666667777777777766665543221111          111  11232224445555555444444443332


Q ss_pred             ccc------------ccc--------CCC---------cchhhhHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHhh
Q 014600          228 RLK------------MGL--------RGN---------SHARISWAYWFKKILYYQVALVYMLTRLVVNVSQAYLAFYVI  278 (422)
Q Consensus       228 ~~~------------~~~--------~~~---------~~~~~~~~~~~~n~~f~~~~~~~~~~~~~~~~~~~y~~~y~~  278 (422)
                      +.+            +++        +++         +++.+.++.++|||.|....+...+......+..++.|+|++
T Consensus       254 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~~l~~Ll~Np~f~~~~la~~~~~~~~~G~~tF~pKylE  333 (539)
T PF03137_consen  254 PGTSERQEEKESSERKEEDSDKDSFKDPKSKKSFGKSIKDFPKALKRLLTNPVFMCLILAGVFESFIVSGFATFLPKYLE  333 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CCcccccchhhhhhcchhhhhhhcccccccccchhhhhhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            211            000        000         122345678899999988888888888888899999999999


Q ss_pred             hccCccchhH
Q 014600          279 NDLRMGQSAK  288 (422)
Q Consensus       279 ~~~~l~~~~~  288 (422)
                      .+.+++++..
T Consensus       334 ~QF~~sas~A  343 (539)
T PF03137_consen  334 SQFGLSASQA  343 (539)
T ss_dssp             ----------
T ss_pred             HHhCCCHHHH
Confidence            9988887653

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>PRK09669 putative symporter YagG; Provisional

Probab=98.11  E-value=5e-05  Score=77.05  Aligned_cols=145  Identities=14%  Similarity=0.083  Sum_probs=88.8

Q ss_pred             hhHHHHHHHHHHHHHHHHHHh-CCChhHHHHHHHHHHHHhhhhhhhhhhhhcccCCchhHHHHHHHHHHHHHHHhhcCcc
Q 014600           34 MLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCM  112 (422)
Q Consensus        34 ~~~~~~~~~~~~~l~~f~t~~-gls~~~~g~i~~i~~l~~ai~~p~~G~lsDr~Grrrp~ll~g~i~~~i~~~~lf~~~~  112 (422)
                      +.............++|.++. +. +...+.+.....+...+..|+.++++||+||||.+. .+.+..++....++.  .
T Consensus       239 ~~~~~~~~~~~~~~~y~~~~~~~~-~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~-~~~~~~~~~~~~~~~--~  314 (444)
T PRK09669        239 VVLLTAVVTRGGATLYYVNYVLLR-PDLATLFLVTGMIAGLFGALLSERLLGKFDRVRAFK-WTIVAFVILSALIFF--I  314 (444)
T ss_pred             HHHHHHHHHHhhhhheeeeeecCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHH-HHHHHHHHHHHHHHH--h
Confidence            333344444444445555555 43 444555666667777788899999999999999865 444444433332221  1


Q ss_pred             CccccCCccchhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCccc------hhhHHHHHHHHHHHHHHHHHHHHHHH
Q 014600          113 PCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTS------RVVLTSCRNAFTMVANLSLYAIAFIV  186 (422)
Q Consensus       113 p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~al~~~~t~~~~e------R~~l~~~~~~~~~ig~~l~~~~~~~l  186 (422)
                      |    + .+.+ .   ..+..++.+++.+......+++.+|..+..+.      .+...+..+....+|..+++.+++.+
T Consensus       315 ~----~-~~~~-~---~~~~~~i~g~~~~~~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~l  385 (444)
T PRK09669        315 P----P-SNVW-L---IFALNILFNFIQNLTTPLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWI  385 (444)
T ss_pred             C----c-chHH-H---HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            1    1 1111 1   12223467888888888889999998752221      23466777777788888888888777


Q ss_pred             Hhhcc
Q 014600          187 FSVST  191 (422)
Q Consensus       187 ~~~~~  191 (422)
                      ++..+
T Consensus       386 l~~~G  390 (444)
T PRK09669        386 LAWVD  390 (444)
T ss_pred             HHHcC
Confidence            77543

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=98.10  E-value=1.8e-08  Score=102.23  Aligned_cols=150  Identities=15%  Similarity=0.050  Sum_probs=101.6

Q ss_pred             hHHHHHHHHHHHHhhhhhhhhhhhhcccCCchhHHHHHHHHHHHHHHHhhcCccCccccCCccchhhhHHHHHHHHHHHH
Q 014600           59 RGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNV  138 (422)
Q Consensus        59 ~~~g~i~~i~~l~~ai~~p~~G~lsDr~Grrrp~ll~g~i~~~i~~~~lf~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~  138 (422)
                      ...+++.+...+...++.++.|+++||+|||+.++ .+..+..++..+...       ++.....   ..+.+.+.+.++
T Consensus        46 ~~~~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~-~~~~~~~i~~~~~~~-------~~~~~~~---~~~~~~R~~~G~  114 (451)
T PF00083_consen   46 LLSSLLTSSFFIGAIVGALIFGFLADRYGRKPALI-ISALLMIIGSILIAF-------APSYNNF---WMLLIGRFLIGF  114 (451)
T ss_pred             HHHHHHHHHHHhhhccccccccccccccccccccc-ccccccccccccccc-------ccccccc---cccccccccccc
Confidence            46788899999999999999999999999998855 566666666544321       2211011   123333456788


Q ss_pred             HHHHHHhhhhhhhhhccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchHHHHHHHHHHHHHHHHHHHh
Q 014600          139 GWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVG  218 (422)
Q Consensus       139 ~~~~~~~p~~al~~~~t~~~~eR~~l~~~~~~~~~ig~~l~~~~~~~l~~~~~~~g~~~~~~~~~~~~~i~~~i~~i~~~  218 (422)
                      +.+........++.|..+ ++.|++..+.......+|.+++..+.... ...      +...+||+...+.++..++.. 
T Consensus       115 ~~g~~~~~~~~~~~E~~~-~~~R~~~~~~~~~~~~~G~~~~~~~~~~~-~~~------~~~~~Wr~~~~~~~~~~l~~~-  185 (451)
T PF00083_consen  115 GIGGAYVVSPIYISEIAP-PKHRGFLSSLFQLFWALGILLASLIGYIV-SYY------SDNWGWRILLIFGAIPSLLVL-  185 (451)
T ss_pred             cccccccccccccccccc-ccccccccccccccccccccccccccccc-ccc------ccccccccccccccccccccc-
Confidence            888888888889999986 67899999988888888877766544222 211      113478888776666665543 


Q ss_pred             hhhccccCcc
Q 014600          219 IFLSRTEEPR  228 (422)
Q Consensus       219 i~~~~~~E~~  228 (422)
                      +....+||.|
T Consensus       186 ~~~~~~pESP  195 (451)
T PF00083_consen  186 LLRFFLPESP  195 (451)
T ss_pred             cccccccccc
Confidence            3446677753

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=98.08  E-value=0.00026  Score=73.28  Aligned_cols=134  Identities=11%  Similarity=0.064  Sum_probs=97.6

Q ss_pred             HHHHHHHHHHHHHh-CCChhHHHHHHHHHHHHhhhhhhhhhhhhcccCCchhHHHHHHHHHHHHHHHhhcCccCccccCC
Q 014600           41 ACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILST  119 (422)
Q Consensus        41 ~~~~~~l~~f~t~~-gls~~~~g~i~~i~~l~~ai~~p~~G~lsDr~Grrrp~ll~g~i~~~i~~~~lf~~~~p~~~~~~  119 (422)
                      ......+|.+..+. |.++...|+++....+...++..+.+++.+|.+++|. +..+.+..+++...+..       .+ 
T Consensus       235 ~a~~aLlPl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~l-v~~~~~~~a~~~~~lal-------~~-  305 (524)
T PF05977_consen  235 SAVWALLPLFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRL-VLLASLLFALALLLLAL-------SP-  305 (524)
T ss_pred             hHHHHhhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchh-hHHHHHHHHHHHHHHhc-------ch-
Confidence            33445678888887 9999999999999999999999999999999988776 45666666666544321       11 


Q ss_pred             ccchhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 014600          120 STLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSV  189 (422)
Q Consensus       120 ~~~~~~~~~~~~~~~l~~~~~~~~~~p~~al~~~~t~~~~eR~~l~~~~~~~~~ig~~l~~~~~~~l~~~  189 (422)
                       +.+..    ++...+.+.++...+++.++..-+.++ ++.|+|+.+........+..+++.+.+.+.+.
T Consensus       306 -~~~~~----~~~l~l~G~~~~~~~~~~~t~~Q~~~P-~~~~GRv~si~~~~~~g~~~lGsll~G~la~~  369 (524)
T PF05977_consen  306 -SFWLA----LIALFLAGAAWIIANSSLNTLVQLSVP-DWVRGRVFSIYQMVFFGGMPLGSLLWGFLADH  369 (524)
T ss_pred             -HHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhCC-HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             11211    112235778888888888888777765 57899999998888888878888777766654

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=98.08  E-value=1e-05  Score=79.26  Aligned_cols=125  Identities=19%  Similarity=0.125  Sum_probs=80.1

Q ss_pred             HHHHHHHHHHHHHHHh-CCChhHHHHHHHHHHHHhhhhhhhhhhhhcccCCchhHHHHHHHHHHHHHHHhhcCccCcccc
Q 014600           39 TAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRIL  117 (422)
Q Consensus        39 ~~~~~~~~l~~f~t~~-gls~~~~g~i~~i~~l~~ai~~p~~G~lsDr~Grrrp~ll~g~i~~~i~~~~lf~~~~p~~~~  117 (422)
                      ......++++.|+++. |.++.++|.+..+..+...+..++.|+++||+||||.+.. +....+.+..++...  .   .
T Consensus       240 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~-~~~~~~~~~~~~~~~--~---~  313 (366)
T TIGR00886       240 SFLGVSSIFAMFFKDQFGLSKVTAGAYASLGGLLGSLARPLGGAISDRLGGARKLLM-SFLGVAMGAFLVVLG--L---V  313 (366)
T ss_pred             HHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhhccchHHHhhccchhHHH-HHHHHHHHHHHHHhc--C---C
Confidence            3345567889999887 9999999999999999999999999999999999887543 444444443333210  1   1


Q ss_pred             CCccchhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCccchhhHHHHHHHHHHHH
Q 014600          118 STSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVA  175 (422)
Q Consensus       118 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~al~~~~t~~~~eR~~l~~~~~~~~~ig  175 (422)
                      +..+........    .+.....+....+..++.++..+  ++|++..++.+...++|
T Consensus       314 ~~~~~~~~~~~~----~~~~~~~g~~~~~~~~~~~~~~~--~~~g~~~g~~~~~~~~g  365 (366)
T TIGR00886       314 SPLSLAVFIVLF----VALFFFSGAGNGSTFALVPHIFR--RATGAVSGLVGAIGNLG  365 (366)
T ss_pred             CcchHHHHHHHH----HHHHHHhccccchhhhcchhhch--hhcccHHHHHHHhccCC
Confidence            100111111111    23344445555556677777764  57888888766655543

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=98.05  E-value=0.0094  Score=60.68  Aligned_cols=203  Identities=8%  Similarity=-0.031  Sum_probs=103.7

Q ss_pred             hHHHHHHHHHHHHhhhh-hhhhhhhhcccCCchhHHHHHHHHHHHHHHHhhcC-ccCcc--ccCCc--------------
Q 014600           59 RGAAAVMLSGQIADGFA-TIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGG-CMPCR--ILSTS--------------  120 (422)
Q Consensus        59 ~~~g~i~~i~~l~~ai~-~p~~G~lsDr~Grrrp~ll~g~i~~~i~~~~lf~~-~~p~~--~~~~~--------------  120 (422)
                      ..+..+....-+-.++. .|+.+++++|++|+|.+-.. ..++...+ ++|.. ..|..  +.++.              
T Consensus        43 e~i~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~lf~~~-~~~F~~~f-~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~  120 (472)
T TIGR00769        43 EIIPFLKTWVVVPMAVIFMLIYTKLSNILSKEALFYTV-ISPFLGFF-ALFAFVIYPLSDLLHPTALADKLLSLLPPGFM  120 (472)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhHHHH-HHHHHHHH-HHHHHHHhcchhhcCCcHHHHHHHhhcchhhH
Confidence            46777777776666666 89999999999999876433 22222222 22210 01211  00000              


Q ss_pred             ------cchhhhHHHHHHHHHHHHHHHH-HHhhhhhhhhhccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Q 014600          121 ------TLKVETISYCVFAAIFNVGWAA-TQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAK  193 (422)
Q Consensus       121 ------~~~~~~~~~~~~~~l~~~~~~~-~~~p~~al~~~~t~~~~eR~~l~~~~~~~~~ig~~l~~~~~~~l~~~~~~~  193 (422)
                            ..|...+.|+    ...+.-.. ...-+++..+|.++ .+|-.|..+.-..++++|.++++.+...+.......
T Consensus       121 ~~i~~~~~W~~~~FYv----~~elw~~~vvS~lFW~fandi~t-~~qakRfy~l~~~ganlg~i~sg~~~~~~~~~~~~~  195 (472)
T TIGR00769       121 GFIAILRIWSFALFYV----MAELWGSVVLSLLFWGFANQITT-IDEAKRFYALFGLGANVALIFSGRTIKYFSKLRASL  195 (472)
T ss_pred             HHHHHHhhhhHHHHHH----HHHHHHHHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence                  0111112221    22222222 22368999999986 678889999999999999988876654443211100


Q ss_pred             CCCchHHHH--HHHHHHHHHHHHHHHhhhhccccC-c---cc-------ccccCCCcchhhhHHHHHHhHHHHHHHHHHH
Q 014600          194 THADLENQY--RWIAYSSIFIGCCFVGIFLSRTEE-P---RL-------KMGLRGNSHARISWAYWFKKILYYQVALVYM  260 (422)
Q Consensus       194 g~~~~~~~~--~~~~~i~~~i~~i~~~i~~~~~~E-~---~~-------~~~~~~~~~~~~~~~~~~~n~~f~~~~~~~~  260 (422)
                      ..+.+..+.  .....+.++.+.+. ..++....+ .   +.       +++++++.+..++++.++|+|..+.+.+.-+
T Consensus       196 ~~~~~~~~~~~~~l~~i~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~k~k~k~~~~es~k~i~~S~yL~~ia~~vi  274 (472)
T TIGR00769       196 GPGVDGWHVSLKNLMVIVICSGLAI-ILLYWWVNRNVLTDPRSYNPALKEKKVKPKMSTMESLKFLVSSPYILDLALLVI  274 (472)
T ss_pred             ccccChHHHHHHHHHHHHHHHHHHH-HHHHHHHHhcccCCccccchhhccccCCCCCCHHHHHHHHHhCHHHHHHHHHHH
Confidence            000111111  12333333333332 233322211 1   10       0111234456789999999998776665555


Q ss_pred             HHHHHHHhh
Q 014600          261 LTRLVVNVS  269 (422)
Q Consensus       261 ~~~~~~~~~  269 (422)
                      +.....+..
T Consensus       275 ~y~~~~nlv  283 (472)
T TIGR00769       275 AYGISINLV  283 (472)
T ss_pred             HHHHHHHHH
Confidence            555554433

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>TIGR00898 2A0119 cation transport protein

Probab=98.00  E-value=0.00026  Score=72.97  Aligned_cols=145  Identities=12%  Similarity=-0.023  Sum_probs=83.5

Q ss_pred             CCChhHHHHHHHHHHHHhhhhhhhhhhhhcccCCchhHHHHHHHHHHHHHHHhhcCccCccccCCccchhhhHHHHHHHH
Q 014600           55 GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVETISYCVFAA  134 (422)
Q Consensus        55 gls~~~~g~i~~i~~l~~ai~~p~~G~lsDr~Grrrp~ll~g~i~~~i~~~~lf~~~~p~~~~~~~~~~~~~~~~~~~~~  134 (422)
                      +.+.....   .+..+......++.++++||+|||+. +..+.+..+++..++..  .|     +...+.....    ..
T Consensus       354 ~~~~~~~~---~~~~~~~i~~~~~~~~l~dr~grr~~-~~~~~~~~~~~~l~~~~--~~-----~~~~~~~~~~----~~  418 (505)
T TIGR00898       354 GGNIYLDL---FISGLVELPAKLITLLLIDRLGRRYT-MAASLLLAGVALLLLLF--VP-----VDLYFLRTAL----AV  418 (505)
T ss_pred             CCChHHHH---HHHHHHHHHHHHHHHHHHHHhCCHHH-HHHHHHHHHHHHHHHHH--cC-----CCchHHHHHH----HH
Confidence            44443333   34455666677889999999999888 45566666666544432  12     1111111111    12


Q ss_pred             HHHHHHHHHHhhhhhhhhhccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchHHHHHHHHHHHHHHHH
Q 014600          135 IFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGC  214 (422)
Q Consensus       135 l~~~~~~~~~~p~~al~~~~t~~~~eR~~l~~~~~~~~~ig~~l~~~~~~~l~~~~~~~g~~~~~~~~~~~~~i~~~i~~  214 (422)
                      +...+.+.......++.+|..+ .+.|++..++.+....+|+++++.+.. +.           ..++...+.+.+...+
T Consensus       419 ~~~~~~~~~~~~~~~~~~e~~p-~~~r~~~~g~~~~~~~ig~~i~p~i~~-~~-----------~~~~~~~~~~~~~~~~  485 (505)
T TIGR00898       419 LGKFGITSAFQMVYLYTAELYP-TVVRNLGVGVCSTMARVGSIISPFLVY-LG-----------EKWLFLPLVLFGGLAL  485 (505)
T ss_pred             HHHHHHHHHHHHHHHHhccccc-HHHHhhhHhHHHHHHHHHHHHHhHHHH-HH-----------HHHHhhHHHHHHHHHH
Confidence            3334444444455677888876 578999999888888888887765543 21           1234445555555555


Q ss_pred             HHHhhhhccccCcc
Q 014600          215 CFVGIFLSRTEEPR  228 (422)
Q Consensus       215 i~~~i~~~~~~E~~  228 (422)
                      ++.++. +..+|++
T Consensus       486 ~~~~~~-~~lpet~  498 (505)
T TIGR00898       486 LAGILT-LFLPETK  498 (505)
T ss_pred             HHHHHH-HcCcCCC
Confidence            554443 3456754

>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism]

Probab=97.93  E-value=0.00023  Score=68.69  Aligned_cols=309  Identities=13%  Similarity=0.070  Sum_probs=160.1

Q ss_pred             HHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHhhhhhhhhhhhhc-----ccCCchhHHHHHHHHHHHHHHHhhcCc
Q 014600           37 DITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELID-----RFGHFKIWHGAGSVLVAVSFSSVFGGC  111 (422)
Q Consensus        37 ~~~~~~~~~~l~~f~t~~gls~~~~g~i~~i~~l~~ai~~p~~G~lsD-----r~Grrrp~ll~g~i~~~i~~~~lf~~~  111 (422)
                      ++..++.. -+|..++.-|.|-+..|..-..+-=+  -.-.++.-+.|     |+||||.|+.-...+.+..+.++-. +
T Consensus        44 GiP~GL~~-~iP~lL~ak~vSyt~~a~fS~ay~P~--sLKllWaPiVDs~y~k~~GrrksWvvp~q~llG~~mllLs~-~  119 (510)
T KOG3574|consen   44 GIPLGLIG-AIPLLLQAKGVSYTSQAIFSFAYWPF--SLKLLWAPIVDSVYSKRFGRRKSWVVPCQYLLGLFMLLLSY-L  119 (510)
T ss_pred             CCchhHhh-hhHHHhcCCCcchhhhhhhhhhhhHH--HHHHHHHhhhHHHHHHhhccccceeeehHHHHHHHHHHHhh-C
Confidence            33334433 33444442266655544433222111  12234455566     8999999987666665555544433 3


Q ss_pred             cCccccCCcc-chhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHh--
Q 014600          112 MPCRILSTST-LKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFS--  188 (422)
Q Consensus       112 ~p~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~p~~al~~~~t~~~~eR~~l~~~~~~~~~ig~~l~~~~~~~l~~--  188 (422)
                      ++.+...+.+ ....+..+.  ..++.+..+..+++...+.-.+-. +++-+-+++....+.+.|..++..+...+-.  
T Consensus       120 v~~~~g~ng~~p~v~~lt~~--f~LLnflaAtQDIAVDgwALtmLs-~e~lgyaST~q~Vg~~~GyfL~~~ifLaL~s~d  196 (510)
T KOG3574|consen  120 VDRGLGGNGGLPNVVALTLL--FLLLNFLAATQDIAVDGWALTMLS-RENLGYASTCQSVGQTAGYFLGNVVFLALESPD  196 (510)
T ss_pred             CCcccccCCCCcchHHHHHH--HHHHHHHHhhhhhhhhHHHHHhcC-HhhcCchhHHHHHHHhhhHHhhcceeeEecChh
Confidence            5534332222 221222111  125666777888888888887764 6788888888888888887776543222111  


Q ss_pred             hccCC--C-CCc----hHHHHHHHHHHHHHHHHHHHhhhhccccCcccccccCCCcchhhh---HHHHHHhHHHHHHHHH
Q 014600          189 VSTAK--T-HAD----LENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARIS---WAYWFKKILYYQVALV  258 (422)
Q Consensus       189 ~~~~~--g-~~~----~~~~~~~~~~i~~~i~~i~~~i~~~~~~E~~~~~~~~~~~~~~~~---~~~~~~n~~f~~~~~~  258 (422)
                      +...+  . ..|    .-.+|.|...   .+.++...+..+.-||++++.++++..+.++.   +++++|-|..+..+++
T Consensus       197 F~N~y~rs~P~~~g~ItL~gy~~fwg---~~~~vat~Lv~~~kke~~~~~~~e~~~~i~~~yk~l~~vLklk~v~~la~i  273 (510)
T KOG3574|consen  197 FCNTYLRSIPLDQGFITLAGYLWFWG---ALFIVATTLVALLKKENDESVDEELELGIHESYKLLRDVLKLKSVRWLAGI  273 (510)
T ss_pred             hhhHHHhcCcCccceEEhhHHHHHHH---HHHHHHHHHHHHhcCCCchhhhhhhhcCHHHHHHHHHHHHcCccHHHHHHH
Confidence            00000  0 000    0124444322   33344444445666776654333333344444   4566777776665555


Q ss_pred             HHHHHHHHHhhhHHHHHHhhhccCccchhHh-----HHHHH------------------HH--------HHHH-------
Q 014600          259 YMLTRLVVNVSQAYLAFYVINDLRMGQSAKA-----LVPAI------------------IY--------ICSF-------  300 (422)
Q Consensus       259 ~~~~~~~~~~~~~y~~~y~~~~~~l~~~~~~-----~iP~~------------------~~--------~~~~-------  300 (422)
                      -+..-.+.++.....+.-..|. |.+....+     .+|.-                  .+        ..+.       
T Consensus       274 ~lt~K~gf~a~da~t~LkLle~-Gv~ke~Lal~~v~~~plqI~l~~~~gk~ta~~~pl~~~lka~~~R~~~~~~~t~Lv~  352 (510)
T KOG3574|consen  274 LLTGKLGFQAADALTSLKLLEH-GVPKEELALIAVPLVPLQIALPLYIGKWTAGPRPLNVFLKAVPYRLGGGLVQTALVW  352 (510)
T ss_pred             HHHHHHHhhhhhhccchHHHHc-CCChhHheeeeeehhhHHHhhhhhheeecCCCCcchHHHHhhhHHHHHHHHHHHHHh
Confidence            5555555555555555554443 33332211     12210                  00        0000       


Q ss_pred             -----------------HHHH----HHHH-------HHhhhhhhhhcCccccccceehhhHHHHHHHHHHHHHHHHHhHh
Q 014600          301 -----------------IVSI----LLQV-------TGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQS  352 (422)
Q Consensus       301 -----------------~~~~----~~~v-------~~~~~~~~~~g~r~~g~~~~~s~~~~~~K~~~a~~~~i~g~~l~  352 (422)
                                       ++..    +.++       .+....+-..+.+..|+  ++..-+...++|..--..+.+++.+
T Consensus       353 ~~~~~~~~~G~~~~~~~il~i~~y~~~~~~~ts~fv~~maf~aqisdp~iggT--ymTlLNTLsnLGg~wp~tv~l~l~D  430 (510)
T KOG3574|consen  353 WTPTLGHSDGTFPRGYYILLITSYAFHQVFVTSMFVSGMAFHAQISDPAIGGT--YMTLLNTLSNLGGNWPGTVALWLAD  430 (510)
T ss_pred             hhcccccCCCceeechHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccCcc--HHHHHHHHHHhcCCcHHHHHHHhcc
Confidence                             0000    0111       11222344556778888  9999999999999998899999999


Q ss_pred             hCCCcc
Q 014600          353 MSPTVL  358 (422)
Q Consensus       353 ~~Gy~~  358 (422)
                      ..++.+
T Consensus       431 ~ltv~~  436 (510)
T KOG3574|consen  431 GLTVKQ  436 (510)
T ss_pred             cCceee
Confidence            888765

>TIGR01272 gluP glucose/galactose transporter

Probab=97.90  E-value=0.00031  Score=67.82  Aligned_cols=136  Identities=9%  Similarity=-0.063  Sum_probs=84.0

Q ss_pred             hhHHHHHHHHHHHHHHHHHHh---CCChhHHHHHHHHHHHHhhhhhhhhhhhhcccCCchhHHHHHHHHHHHHHHHhhcC
Q 014600           34 MLNDITAACWFTYLLLFLTDI---GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGG  110 (422)
Q Consensus        34 ~~~~~~~~~~~~~l~~f~t~~---gls~~~~g~i~~i~~l~~ai~~p~~G~lsDr~Grrrp~ll~g~i~~~i~~~~lf~~  110 (422)
                      +...........+++.|++|.   |+++.+.+...........+...+.+++.||+|+||. +..+....++...+... 
T Consensus       150 f~yvg~e~~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~-l~~~~~l~~~~~~l~~~-  227 (310)
T TIGR01272       150 FVYVGAEVSAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRY-LAFNAFLAVLLSIGAAL-  227 (310)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHH-HHHHHHHHHHHHHHHHH-
Confidence            333334556678899999863   8999999999999999999999999999999998886 55666666655433321 


Q ss_pred             ccCccccCCccchhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 014600          111 CMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVF  187 (422)
Q Consensus       111 ~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~al~~~~t~~~~eR~~l~~~~~~~~~ig~~l~~~~~~~l~  187 (422)
                            .+  +.. .  .+.+  .+.+++.+.......++..+..++  +.++.+++ ...+.+|+.+.+.+.+.+.
T Consensus       228 ------~~--~~~-~--~~~~--~l~g~~~s~i~P~~~s~a~~~~~~--~~~~asai-~~~~~~Gg~i~P~l~G~la  288 (310)
T TIGR01272       228 ------TH--GYV-A--MWFV--LALGLFNSIMFPTIFSLALNALGR--HTSQGSGI-LCLAIVGGAIVPLLQGSLA  288 (310)
T ss_pred             ------cC--CHH-H--HHHH--HHHHHHHHHHHHHHHHHHHhhhhh--hhhhhHHH-HHHHHhcchHHHHHHHHHH
Confidence                  11  111 1  1111  245566665555555666554432  23344444 2445566655554443333

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=97.85  E-value=0.0001  Score=74.05  Aligned_cols=152  Identities=17%  Similarity=0.124  Sum_probs=106.4

Q ss_pred             eeeeccchhHHHHHHHHHHHHHHHHHHh-CCChhHHHHHHHHHHHHhhhhhhhhhhhhcccCCchhHHHHHHHHHHHHHH
Q 014600           27 LYYGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFS  105 (422)
Q Consensus        27 ~~y~~g~~~~~~~~~~~~~~l~~f~t~~-gls~~~~g~i~~i~~l~~ai~~p~~G~lsDr~Grrrp~ll~g~i~~~i~~~  105 (422)
                      +......+......++.++...+|.+.+ |-+.......+........+..+++..+++|+||||.|. ++.+..+++..
T Consensus       239 ~~~l~~~l~~~~~~~i~~s~~~yy~~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~-~~~~~~~i~~~  317 (467)
T COG2211         239 LLLLLMNLLLFIAFNIRGSIMVYYVTYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFL-IGLLLLAVGYL  317 (467)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhheeEEEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHH-HHHHHHHHHHH
Confidence            4444556666677777777777777777 888888888888888877777999999999999999976 56777788777


Q ss_pred             HhhcCccCccccCCccchhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCccc-h------hhHHHHHHHHHHHHHHH
Q 014600          106 SVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTS-R------VVLTSCRNAFTMVANLS  178 (422)
Q Consensus       106 ~lf~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~al~~~~t~~~~e-R------~~l~~~~~~~~~ig~~l  178 (422)
                      ++|.  .|     ..+.+.    .++..++.+++.+..+.-.+++++|..+ ++| |      +...+....+.-+|..+
T Consensus       318 ~~~f--~~-----~~~~~l----~~~~~~i~~~g~~~~~~l~wam~~d~vD-yge~~TG~R~eGi~~s~~tF~~K~g~al  385 (467)
T COG2211         318 LLYF--TP-----AGSVVL----IVVALIIAGVGTGIANPLPWAMVADTVD-YGEWKTGVRREGIVYSGMTFFRKLGLAL  385 (467)
T ss_pred             HHHh--hc-----CcchHH----HHHHHHHHHHHhhccccccHHHhcchhh-HHHHHhCCCchhhHHHHHHHHHHHHHHH
Confidence            7764  23     122221    1222356788888888888999999864 333 2      23455555666677777


Q ss_pred             HHHHHHHHHhhcc
Q 014600          179 LYAIAFIVFSVST  191 (422)
Q Consensus       179 ~~~~~~~l~~~~~  191 (422)
                      +..+.+.+++..+
T Consensus       386 a~~~~g~~L~~~G  398 (467)
T COG2211         386 AGFIPGWILGAIG  398 (467)
T ss_pred             HHHHHHHHHHHcC
Confidence            7777667766543

>PRK11043 putative transporter; Provisional

Probab=97.84  E-value=0.00045  Score=68.87  Aligned_cols=133  Identities=14%  Similarity=0.084  Sum_probs=75.6

Q ss_pred             HHHHHHHHHHHhCCChhHHHHHHHHHHHHhhhhhhhhhhhhcccCCchhHHHHHHHHHHHHHHHhhcCccCccccCCccc
Q 014600           43 WFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTL  122 (422)
Q Consensus        43 ~~~~l~~f~t~~gls~~~~g~i~~i~~l~~ai~~p~~G~lsDr~Grrrp~ll~g~i~~~i~~~~lf~~~~p~~~~~~~~~  122 (422)
                      ...+.+.++++.|.++.++|.......+...+...+.+++.||+|+||.. ..+.+..+++...++.  ..  .......
T Consensus       222 ~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~~~~~~~-~~~~~~~~~~~~~~~~--~~--~~~~~~~  296 (401)
T PRK11043        222 WLTGSPFILEQMGYSPADIGLSYVPQTIAFLVGGYGCRAALQKWGGEQLL-PWLLVLFAVSVIAIWL--AS--LLSHPSL  296 (401)
T ss_pred             HHHHhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHH-HHHHHHHHHHHHHHHH--HH--HhccCcH
Confidence            34566777766699999999888777777777788889999999988753 3333333333222211  00  0001111


Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCccchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 014600          123 KVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIV  186 (422)
Q Consensus       123 ~~~~~~~~~~~~l~~~~~~~~~~p~~al~~~~t~~~~eR~~l~~~~~~~~~ig~~l~~~~~~~l  186 (422)
                      ...    ++...+.+.+.+.......+...+..  +++|++..++.+.....++..++.+.+++
T Consensus       297 ~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~g~~~g~~~~~~~~~~~~~~~~~g~l  354 (401)
T PRK11043        297 VPL----LIPFCVMAAANGAIYPIVVAQALRPF--PQATGKAAALQNTLQLGLCFLASLLVSAL  354 (401)
T ss_pred             HHH----HHHHHHHHHHHHHHHHHHHHHHhhhC--cccChHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            111    11112344455544444444444433  46799999988877666666655544444

>PRK11462 putative transporter; Provisional

Probab=97.84  E-value=0.0008  Score=68.72  Aligned_cols=142  Identities=12%  Similarity=0.062  Sum_probs=82.5

Q ss_pred             HHHHHHHHHHHHHHHHHHh-CCChhHHHHHHHHHHHHhhhhhhhhhhhhcccCCchhHHHHHHHHHHHHHHHhhcCccCc
Q 014600           36 NDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPC  114 (422)
Q Consensus        36 ~~~~~~~~~~~l~~f~t~~-gls~~~~g~i~~i~~l~~ai~~p~~G~lsDr~Grrrp~ll~g~i~~~i~~~~lf~~~~p~  114 (422)
                      ..+......+...+|.+.+ |.+ ...+.++.+..+...+..++.++++||+|||+.+.............+.+.   | 
T Consensus       240 ~~~~~~~~~~~~~y~~~y~~g~~-~~~~~~l~~~~i~~iig~~l~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~---~-  314 (460)
T PRK11462        240 NILAVCVRGGAMMYYVTWILGTP-EVFVAFLTTYCVGNLIGSALAKPLTDWKCKVTIFWWTNALLAVISLAMFFV---P-  314 (460)
T ss_pred             HHHHHHHHHhHhhhhhhhhcCCh-HHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHh---c-
Confidence            3344444455566667766 543 345667777778888899999999999999888543333222222222221   2 


Q ss_pred             cccCCccchhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCcc----chh--hHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014600          115 RILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNST----SRV--VLTSCRNAFTMVANLSLYAIAFIVFS  188 (422)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~al~~~~t~~~~----eR~--~l~~~~~~~~~ig~~l~~~~~~~l~~  188 (422)
                          ..+....   +. ..++.+++.+.......++.+|..+..+    +|.  ...+.......+|..+++.+.+.+++
T Consensus       315 ----~~~~~~~---~~-~~~l~g~~~~~~~~l~~~m~ad~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~i~g~iL~  386 (460)
T PRK11462        315 ----MQASITM---FV-FIFVIGVLHQLVTPIQWVMMSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGALIGWMLA  386 (460)
T ss_pred             ----hhHHHHH---HH-HHHHHHHHHHHHHHHHHHHHHHhHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                1111111   11 1234566666666666788888764211    232  22444456777888888877777776


Q ss_pred             hc
Q 014600          189 VS  190 (422)
Q Consensus       189 ~~  190 (422)
                      ..
T Consensus       387 ~~  388 (460)
T PRK11462        387 YG  388 (460)
T ss_pred             Hc
Confidence            53

>PRK10133 L-fucose transporter; Provisional

Probab=97.79  E-value=0.00048  Score=69.86  Aligned_cols=117  Identities=13%  Similarity=-0.012  Sum_probs=74.2

Q ss_pred             hHHHHHHHHHHHHHHHH-HHh-CCChhHHHHHHHHHHHHhhhhhhhhhhhhcccCCchhHHHHHHHHHHHHHHHhhcCcc
Q 014600           35 LNDITAACWFTYLLLFL-TDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCM  112 (422)
Q Consensus        35 ~~~~~~~~~~~~l~~f~-t~~-gls~~~~g~i~~i~~l~~ai~~p~~G~lsDr~Grrrp~ll~g~i~~~i~~~~lf~~~~  112 (422)
                      ...........|++.|+ ++. |+++.++|..+....+...+..++.|++.||+||||. +..+....++...+...   
T Consensus       269 ~~~~~~~~~~~~~~~~l~~~~~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~g~~~~-l~~~~~~~~~~~~~~~~---  344 (438)
T PRK10133        269 CYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKV-LAAYALIAMALCLISAF---  344 (438)
T ss_pred             HHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHH-HHHHHHHHHHHHHHHHH---
Confidence            33333333446777775 566 9999999999999999999999999999999999987 44554444443322211   


Q ss_pred             CccccCCccchhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCccchhhHHHHH
Q 014600          113 PCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCR  168 (422)
Q Consensus       113 p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~al~~~~t~~~~eR~~l~~~~  168 (422)
                          .++  .. ....    ..+++++.+....+..+...+..+  ++.+..++.-
T Consensus       345 ----~~~--~~-~~~~----~~l~glg~~~i~P~~~s~a~~~~~--~~~~~as~l~  387 (438)
T PRK10133        345 ----AGG--HV-GLIA----LTLCSAFMSIQYPTIFSLGIKNLG--QDTKYGSSFI  387 (438)
T ss_pred             ----cCC--hH-HHHH----HHHHHHHHHHHHHHHHHHHHcccc--hhhccchhHH
Confidence                111  11 1111    135677777777777777776543  2333444443

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=97.73  E-value=0.00015  Score=67.46  Aligned_cols=284  Identities=11%  Similarity=0.055  Sum_probs=157.3

Q ss_pred             CCChhHHHHHHHHHHHHhhhhhhhhhhhhcc-cCCchhHHHHHHHHHHHHHHHhhcCccCccccCCccchhhhHHHHHHH
Q 014600           55 GLSPRGAAAVMLSGQIADGFATIFIGELIDR-FGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVETISYCVFA  133 (422)
Q Consensus        55 gls~~~~g~i~~i~~l~~ai~~p~~G~lsDr-~Grrrp~ll~g~i~~~i~~~~lf~~~~p~~~~~~~~~~~~~~~~~~~~  133 (422)
                      .+..+...++.+++.+=+.+.--+.|++.|| +|-|.--++.+ +...++= +.|.       .  ....-.+.....-+
T Consensus        75 ni~~akftLlYsvYSwPNvVlcffgGflidr~fgir~gtii~~-~fv~~Gq-liFa-------~--Ggi~~aFw~M~~GR  143 (459)
T KOG4686|consen   75 NIEYAKFTLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTIILC-IFVFLGQ-LIFA-------A--GGISHAFWTMLAGR  143 (459)
T ss_pred             ccceeeeeeeeeeccCCCEEEeeecceeehhhhhhhHHHHHHH-HHHHHHH-HHHH-------h--chHHHHHHHHHhhh
Confidence            5667788889999999999888899999995 77553323322 2222221 2231       0  11111222333334


Q ss_pred             HHHHHHHHHHHhhhhhhhhhccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchHHHHHHHHH--HHHH
Q 014600          134 AIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYRWIAY--SSIF  211 (422)
Q Consensus       134 ~l~~~~~~~~~~p~~al~~~~t~~~~eR~~l~~~~~~~~~ig~~l~~~~~~~l~~~~~~~g~~~~~~~~~~~~~--i~~~  211 (422)
                      .+++++--...+..+.+...+.+ -+|-+.+.+......-+|+.+--.+.+++.+..+..-.+   .+.....+  .+..
T Consensus       144 F~FGIGgESlAVaQN~yav~wFK-GKELn~vfGlqlSvAR~GstvNf~lm~~ly~~~~~~~~~---~ghT~LG~~l~~~~  219 (459)
T KOG4686|consen  144 FLFGIGGESLAVAQNKYAVYWFK-GKELNFVFGLQLSVARLGSTVNFLLMPFLYDTMGRMFPG---VGHTLLGLWLCFEV  219 (459)
T ss_pred             eeeccCchhhhhhhcceeEEEec-CccccchhhHHHHHHHhhceeeeeecHHHHHHHHHhccc---chHHHHHHHHHHHH
Confidence            57888877778889999988887 578888888887777777765555555665543321001   12122211  1222


Q ss_pred             HHHHHHhhhhcc--c-cC---ccccccc--CCCcchhhhHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhccCc
Q 014600          212 IGCCFVGIFLSR--T-EE---PRLKMGL--RGNSHARISWAYWFKKILYYQVALVYMLTRLVVNVSQAYLAFYVINDLRM  283 (422)
Q Consensus       212 i~~i~~~i~~~~--~-~E---~~~~~~~--~~~~~~~~~~~~~~~n~~f~~~~~~~~~~~~~~~~~~~y~~~y~~~~~~l  283 (422)
                      ..+...++|...  . .+   |..+.++  ..+++...+. .-+ .++||.+...-++...+..-+.+.=+.+.++..|+
T Consensus       220 ~tc~~slical~lg~~D~rAerilh~e~g~~Ge~pkLtdv-~~f-~ppfw~~~iicv~yyva~fPFi~lg~~fF~~rfGl  297 (459)
T KOG4686|consen  220 KTCKQSLICALSLGLSDDRAERILHLEEGFLGEEPKLTDV-NTF-YPPFWVLVIICVLYYVAWFPFITLGPMFFQKRFGL  297 (459)
T ss_pred             HHHHHHHHHHHHhhhhhhHHHHHHhhhcCcccCCcccccc-ccc-CccHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhCC
Confidence            333333333221  1 22   1111111  0011111111 111 35677666555555555555566667778888888


Q ss_pred             cchhHh------------HHHHHH-----------HHHH-HHHHHHHH---------------HHH----------hhhh
Q 014600          284 GQSAKA------------LVPAII-----------YICS-FIVSILLQ---------------VTG----------ISMQ  314 (422)
Q Consensus       284 ~~~~~~------------~iP~~~-----------~~~~-~~~~~~~~---------------v~~----------~~~~  314 (422)
                      ++....            ..|...           |+.+ ++..+.+.               +.|          +-+.
T Consensus       298 S~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~~a~~~tl~~H~~l~Ft~lsPy~~m~~lGLsysllAcslWP~v  377 (459)
T KOG4686|consen  298 SAVSAGNILSTVYGISAVLSPVFGAISDKYGFNLWWVASACILTLLGHSGLFFTFLSPYTSMTFLGLSYSLLACSLWPCV  377 (459)
T ss_pred             ChhhccchhhhhhhhhhhhhhhHHHhHhhhcceehhHHHHHHHHHHHhhhHHhhhccHHHHHHHHhhhHHHHHHHHhhhh
Confidence            765421            223211           2222 22222211               111          2234


Q ss_pred             hhhhcCccccccceehhhHHHHHHHHHHHHHHHHHhHhhCC-Cc
Q 014600          315 NVLVGEDLSGCAFVCGTLSFLDKMSCGIAVYVLQSYQSMSP-TV  357 (422)
Q Consensus       315 ~~~~g~r~~g~~~~~s~~~~~~K~~~a~~~~i~g~~l~~~G-y~  357 (422)
                      +...-+..-|+  -|+...-++++|-++.+.+.|.+++..| |+
T Consensus       378 a~~vpE~qLGT--aygf~qsIqNLgla~i~Iiag~i~d~~g~y~  419 (459)
T KOG4686|consen  378 ASLVPEEQLGT--AYGFIQSIQNLGLAFIPIIAGFIADGDGSYD  419 (459)
T ss_pred             hhhCCHHHhcc--hHHHHHHHHhhhhhHHhhhhheeecCCCchh
Confidence            55667777888  8999999999999999999999988776 54

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=97.66  E-value=0.0019  Score=63.60  Aligned_cols=131  Identities=12%  Similarity=0.135  Sum_probs=94.6

Q ss_pred             HHHHHHHHHHHh-CCChhHHHHHHHHHHHHhhhhhhhhhhhhcccCCchhHHHHHHHHHHHHHH-HhhcCccCccccCCc
Q 014600           43 WFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFS-SVFGGCMPCRILSTS  120 (422)
Q Consensus        43 ~~~~l~~f~t~~-gls~~~~g~i~~i~~l~~ai~~p~~G~lsDr~Grrrp~ll~g~i~~~i~~~-~lf~~~~p~~~~~~~  120 (422)
                      +.++-..|-... |++..+..++.....+..+....+.|++.||+|-|+..+ .+.+...+..+ .++.         ..
T Consensus       271 il~~~~~fg~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~-~~lvi~~~~~~~~~~~---------~~  340 (438)
T COG2270         271 ILAMGGVFGAADLGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVLM-IGLVILSIAALYLIFL---------EG  340 (438)
T ss_pred             HHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeeh-HHHHHHHHHHHHHHHc---------cc
Confidence            345667777755 999999999999999999999999999999999887644 45444444433 3332         11


Q ss_pred             cchhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 014600          121 TLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSV  189 (422)
Q Consensus       121 ~~~~~~~~~~~~~~l~~~~~~~~~~p~~al~~~~t~~~~eR~~l~~~~~~~~~ig~~l~~~~~~~l~~~  189 (422)
                       .    .-|.+..++.++..+..+...-++..++.+ ++|-++..++.+..+-.++.+++.+...+.+.
T Consensus       341 -~----~~f~i~gll~g~s~G~~qA~SRSy~~~lvp-~~k~~~fFglyaltgra~S~~gp~lv~v~t~i  403 (438)
T COG2270         341 -E----LDFWILGLLVGTSLGGAQASSRSYLARLVP-KGKEGRFFGLYALTGRAASFLGPFLVAVITQI  403 (438)
T ss_pred             -c----HHHHHHHHHHHHhcchHHHHHHHHHHHhCC-CccccceeehhhhhhhHHHHHHHHHHHHHHHH
Confidence             1    112223346778888888888999999987 45667788888888888888887766555544

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=97.62  E-value=0.0015  Score=64.97  Aligned_cols=181  Identities=9%  Similarity=0.019  Sum_probs=114.2

Q ss_pred             ceeeeeeeccchhHHHHHHHHHHHHHHHHHHh----CCChhHHHHHHHHHHHHhhhhhhhhhhhhcccCCchhHHHHHHH
Q 014600           23 RWSVLYYGSGHMLNDITAACWFTYLLLFLTDI----GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSV   98 (422)
Q Consensus        23 ~~~~~~y~~g~~~~~~~~~~~~~~l~~f~t~~----gls~~~~g~i~~i~~l~~ai~~p~~G~lsDr~Grrrp~ll~g~i   98 (422)
                      .++.+.+.+--.+....+......++.|+++.    +.+....|.+.++.-+..+..--+..++.+|+|.|+..+ ++..
T Consensus       219 ~~~fw~~~l~v~g~~~~Y~vfdqqf~~y~~~~f~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Ll-lag~  297 (412)
T PF01306_consen  219 MRNFWFFVLFVIGVAAIYDVFDQQFPIYFASFFQSAGQGNQMYGYLWSVQVFLEALMMFFSPWLINRIGAKNLLL-LAGV  297 (412)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH-HHHH
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHH-HHHH
Confidence            34444555555555556666666788888874    456778999999999999999999999999999998855 4555


Q ss_pred             HHHHHHHHhhcCccCccccCCccchhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCccchhhHHHHH-HHHHHHHHH
Q 014600           99 LVAVSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCR-NAFTMVANL  177 (422)
Q Consensus        99 ~~~i~~~~lf~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~al~~~~t~~~~eR~~l~~~~-~~~~~ig~~  177 (422)
                      ..++=....-.       .++  .+    ...+...+.++-+++..++..-.+.+..+ ++...++.... .....+|..
T Consensus       298 i~~iRi~~~~~-------~~~--~~----~i~~~klLH~~e~~l~lva~fkYI~~~fd-~rlsAt~y~v~~~~~~~~~~~  363 (412)
T PF01306_consen  298 IMAIRIIGSGF-------ATN--PW----VISLIKLLHALEFPLLLVAAFKYITAHFD-KRLSATLYLVGFQFAKQIGII  363 (412)
T ss_dssp             HHHHHHHHHHT---------S--HH----HHHHHHHHHHHHHHHHHHHHHHHHHHHS--GGGHHHHHHHHHTTTHHHHHH
T ss_pred             HHHHHHHHHhh-------hcc--hH----HHHHHHHHHHHHHHHHHHHHHHHHHHhCC-HhHHHHHHHHHHHHHHHHHHH
Confidence            55554443321       111  12    12223356777778877777777777654 33333333332 234455555


Q ss_pred             HHHHHHHHHHhhccCCCCCchHHHHHHHHHHHHHHHHHHHhhhhccccCcc
Q 014600          178 SLYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPR  228 (422)
Q Consensus       178 l~~~~~~~l~~~~~~~g~~~~~~~~~~~~~i~~~i~~i~~~i~~~~~~E~~  228 (422)
                      +.+...+.+.+          +.|++.++.+.+.+.+++.+++++..|+++
T Consensus       364 i~s~~~G~lyd----------~~G~~~tylimg~iv~~~~li~~f~l~~~~  404 (412)
T PF01306_consen  364 ILSPLAGYLYD----------RIGFQHTYLIMGLIVLPFTLISAFTLKKDK  404 (412)
T ss_dssp             HHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHS--SS
T ss_pred             HHhhhHHhhHh----------hcCcHHHHHHHHHHHHHHHHHheeeecCCC
Confidence            55544444433          457888888888888888888888776654

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>TIGR00788 fbt folate/biopterin transporter

Probab=97.59  E-value=0.00056  Score=70.01  Aligned_cols=132  Identities=8%  Similarity=-0.065  Sum_probs=92.2

Q ss_pred             CCChhHHHHHHHHHHHHhhhhhhhhhhhhcccCCchhHHHHHHHHHHHHHHHhhcCccCccccCCccchhhhHHHHHHHH
Q 014600           55 GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVETISYCVFAA  134 (422)
Q Consensus        55 gls~~~~g~i~~i~~l~~ai~~p~~G~lsDr~Grrrp~ll~g~i~~~i~~~~lf~~~~p~~~~~~~~~~~~~~~~~~~~~  134 (422)
                      |.++..+|.+..+..+...+...+.+++.+|++.|+. +.++.+..+++..+......-+.........+   +.....+
T Consensus       284 G~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~-l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~---~~~~~~~  359 (468)
T TIGR00788       284 PGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRLL-FGVTTLLYTLSSLFDLILVKRWNLAFGISDEV---FVLGDSI  359 (468)
T ss_pred             CCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHHHH-HHHHHHHHHHHHhCceeeeeccccccCCCCee---eeeehhH
Confidence            9999999999999999999999999999999998776 45666666665433210000000000001110   1111224


Q ss_pred             HHHHHHHHHHhhhhhhhhhccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 014600          135 IFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVST  191 (422)
Q Consensus       135 l~~~~~~~~~~p~~al~~~~t~~~~eR~~l~~~~~~~~~ig~~l~~~~~~~l~~~~~  191 (422)
                      +.++++.+..+|...++.++.+ +++++...+.-+...++|..+++.+++.+.+.++
T Consensus       360 l~~~~~g~~~~~~~~~~~~~~p-~~~egt~~al~~s~~~lg~~v~~~~gg~l~~~~g  415 (468)
T TIGR00788       360 IAEVLAQLKFMPFLVLLARLCP-SGCESSVFALLASILHLGSSVSGFLGVLLMETIG  415 (468)
T ss_pred             HHHHHHHHHHccHHHHHHHhCC-CCceehHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            6778888889999999999886 5778888888888888898888888777777654

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=97.57  E-value=0.0018  Score=64.31  Aligned_cols=129  Identities=12%  Similarity=0.031  Sum_probs=77.3

Q ss_pred             HHHHHHHHHHHHh-CCChhHHHHHHHHHHHHhhhhhhhhhhhhcccCCchhHHHHHHHHHHHHHHHhhcCccCccccCCc
Q 014600           42 CWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTS  120 (422)
Q Consensus        42 ~~~~~l~~f~t~~-gls~~~~g~i~~i~~l~~ai~~p~~G~lsDr~Grrrp~ll~g~i~~~i~~~~lf~~~~p~~~~~~~  120 (422)
                      ....+.+.|+++. |.++.+.|.+.....+...+..++.+++.||+||+.. .  +.....++...++.   + ......
T Consensus       225 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~-~--~~~~~~~~~~~~~~---~-~~~~~~  297 (394)
T PRK11652        225 VFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLMW-Q--SVICCLLAGLLMWI---P-GWFGVM  297 (394)
T ss_pred             HHHHhChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H--HHHHHHHHHHHHHH---H-HHhccc
Confidence            3345567788886 9999999999888877777888889999999884333 2  22222222222111   1 000011


Q ss_pred             cchhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCccchhhHHHHHHHHHHHHHHHHHHHH
Q 014600          121 TLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIA  183 (422)
Q Consensus       121 ~~~~~~~~~~~~~~l~~~~~~~~~~p~~al~~~~t~~~~eR~~l~~~~~~~~~ig~~l~~~~~  183 (422)
                      +.+ .   ......+++.+.+....+..+...+..  +++|+...+..+....+|..+++.+.
T Consensus       298 ~~~-~---~~~~~~~~~~g~~~~~~~~~~~~~~~~--~~~~g~~~~~~~~~~~lg~~~~~~~~  354 (394)
T PRK11652        298 NVW-T---LLVPAALFFFGAGMLFPLATSGAMEPF--PYLAGTAGALLGGLQNIGSGLAALLS  354 (394)
T ss_pred             cHH-H---HHHHHHHHHHHHHHHHHHHHHHHHhhc--cccchHHHHHHHHHHHHHHHHHHHHH
Confidence            111 1   111223566677776777777776655  35778888887777777776665443

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=97.51  E-value=0.0033  Score=64.75  Aligned_cols=116  Identities=10%  Similarity=0.021  Sum_probs=76.8

Q ss_pred             HHHHHHHHHHhhhhhhhhhhhhcccCCchh------HHHHHHHHHHHHHHHhhc-C-ccCccccCCccchhhhHHHHHHH
Q 014600           62 AAVMLSGQIADGFATIFIGELIDRFGHFKI------WHGAGSVLVAVSFSSVFG-G-CMPCRILSTSTLKVETISYCVFA  133 (422)
Q Consensus        62 g~i~~i~~l~~ai~~p~~G~lsDr~Grrrp------~ll~g~i~~~i~~~~lf~-~-~~p~~~~~~~~~~~~~~~~~~~~  133 (422)
                      +.+..+..++..+..|+.|++.||.|||+.      -+.+|.++.++++..+.. . ... ......+.+|....|    
T Consensus       312 ~~~~~~n~~~iii~~pl~~~l~~rl~~r~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~-~~~~~~s~~~~i~~~----  386 (489)
T PRK10207        312 VSFQALNPFWVVVASPILAGIYTHLGSKGKDLSMPMKFTLGMFLCSLGFLTAAAAGMWFA-DAQGLTSPWFIVLVY----  386 (489)
T ss_pred             HHHHhHhHHHHHHHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhhc-CCCCccCHHHHHHHH----
Confidence            445556667777899999999999998862      144566666666543210 0 000 001112333333333    


Q ss_pred             HHHHHHHHHHHhhhhhhhhhccCCccchhhHHHHHHHHHHHHHHHHHHHH
Q 014600          134 AIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIA  183 (422)
Q Consensus       134 ~l~~~~~~~~~~p~~al~~~~t~~~~eR~~l~~~~~~~~~ig~~l~~~~~  183 (422)
                      .+.+++..+...+-.+......+ ++.++.+++..+....+|+.++..+.
T Consensus       387 ~l~g~Ge~~~~~~g~~~~~~~aP-~~~~g~~~g~~~l~~~ig~~lg~~l~  435 (489)
T PRK10207        387 LFQSLGELFISALGLAMIAALVP-QHLMGFILGMWFLTQAAAFLLGGYVA  435 (489)
T ss_pred             HHHHHHHHHHhHHHHHHHHHhCh-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            36888999999998888888876 67889999998888888888776654

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=97.46  E-value=0.0007  Score=69.80  Aligned_cols=172  Identities=16%  Similarity=0.090  Sum_probs=105.7

Q ss_pred             eeeeeeccchhHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHhhhhhhhhhhhhcccCCchhHHHHHHHHHHHHH
Q 014600           25 SVLYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSF  104 (422)
Q Consensus        25 ~~~~y~~g~~~~~~~~~~~~~~l~~f~t~~gls~~~~g~i~~i~~l~~ai~~p~~G~lsDr~Grrrp~ll~g~i~~~i~~  104 (422)
                      ..+.++.+.....+.+.....|++.|..+.|.+...+..++++..+.|.+.-++.|++.||...++.++...+++.....
T Consensus       299 ~fl~~~~~~~~~~~g~~~p~~~l~~~~~~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~~~ll~~gl~  378 (509)
T KOG2504|consen  299 KFLLLALSNLFAYLGFNVPFVYLPSYAKSLGLSSNDAAFLLSIIGVSDIIGRIILGLLADKPGIRALVLFLLTLLIAGLA  378 (509)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCccccchHHHHHHHHHHHHHH
Confidence            34556666666666666666777888886799999999999999999999999999999998866666543333332222


Q ss_pred             HHhhcCccCccccCCccchhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCccchhhHHHHHHHHHHHHHHHHHHHHH
Q 014600          105 SSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAF  184 (422)
Q Consensus       105 ~~lf~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~al~~~~t~~~~eR~~l~~~~~~~~~ig~~l~~~~~~  184 (422)
                       .++.   |.  .   ...+.+..+   .++++.+.+.+..-..-...|+.. .++-+...++...+..++.+++    +
T Consensus       379 -~~~~---p~--~---~~~~~l~~~---~~~fG~~~g~~~~l~~~i~~~~~g-~~~l~~a~Gl~l~~~gi~~l~g----p  441 (509)
T KOG2504|consen  379 -RLFL---PF--A---TTYVGLIVF---SILFGFCVGSFSSLTPVILVDLVG-LEKLSNAYGLLLLFQGIGALVG----P  441 (509)
T ss_pred             -HHHH---HH--h---ccHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHcC-hhhcchHHHHHHHHhHHHHHcC----c
Confidence             2342   31  1   112222222   345666665544433345556553 4556777777777777766655    4


Q ss_pred             HHHhhccCCCCCchHHHHHHHHHHHHHHHHHHHh
Q 014600          185 IVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVG  218 (422)
Q Consensus       185 ~l~~~~~~~g~~~~~~~~~~~~~i~~~i~~i~~~  218 (422)
                      |+.+.+-     |....|...++..++..++...
T Consensus       442 Piag~~~-----d~tg~Y~~~f~~~g~~~~~s~~  470 (509)
T KOG2504|consen  442 PIAGLLY-----DITGNYDHAFYFCGLCFLLSAV  470 (509)
T ss_pred             ccceeee-----eccCCeeeehhhcChHHHHHHH
Confidence            5555432     1122366666666555554443

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=97.46  E-value=0.005  Score=57.28  Aligned_cols=117  Identities=19%  Similarity=0.213  Sum_probs=74.4

Q ss_pred             hCCChhHHHHHHHHHHHHhhhhhhhhhhhhcccCCchhHHHHHHHHHHHHHHHhhcCccCccccCCccchhhhHHHHHHH
Q 014600           54 IGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVETISYCVFA  133 (422)
Q Consensus        54 ~gls~~~~g~i~~i~~l~~ai~~p~~G~lsDr~Grrrp~ll~g~i~~~i~~~~lf~~~~p~~~~~~~~~~~~~~~~~~~~  133 (422)
                      .|+|..+...+-....+...+ ..+.|.+.||+|.|.. +++|++...+++.++|. ++- +-.+.. ..|....+.   
T Consensus        32 l~~sq~~l~~l~~~~~~G~~~-G~~~G~l~d~~gp~~~-l~iG~~~~~~GY~~~~l-~~~-~~i~~~-~~~~~~~~~---  103 (250)
T PF06813_consen   32 LGYSQSQLNTLSTAGDIGSYF-GILAGLLYDRFGPWVV-LLIGAVLGFVGYGLLWL-AVS-GRIPSL-PVWLMCLFL---  103 (250)
T ss_pred             hCCCHHHHHHHHHHHHHHhhc-cHHHHHHHHhcchHHH-HHHHHHHHHHHHHHHHH-HHh-CccCcc-chHHHHHHH---
Confidence            399999999998888888876 5888999999998766 67899999999988875 111 111111 222212121   


Q ss_pred             HHHHHHHHHHHhhhhhhhhhccCCccchhhHHHHHHHHHHHHHHHHH
Q 014600          134 AIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLY  180 (422)
Q Consensus       134 ~l~~~~~~~~~~p~~al~~~~t~~~~eR~~l~~~~~~~~~ig~~l~~  180 (422)
                      .+.+.+-+.+++..  +...+..=|++|+++.++--.+.++++.+-.
T Consensus       104 ~l~~~s~~~~~ta~--lvt~~~NFP~~RG~vvgilk~~~GLSaai~t  148 (250)
T PF06813_consen  104 FLGGNSSCWFNTAS--LVTCVRNFPRSRGTVVGILKGFFGLSAAIFT  148 (250)
T ss_pred             HHHcccHHHhhhHH--HHHHHHhCccccCceehhhhHHHHhHHHHHH
Confidence            12333333333332  2222222267899999998877777765544

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=97.17  E-value=0.00036  Score=71.42  Aligned_cols=85  Identities=16%  Similarity=0.137  Sum_probs=70.1

Q ss_pred             eeeeeeeccchhHHHHHHHHHHHHHHHHHHh-CCChhHHHHHHHHHHHHhhhhhhhhhhhhcc----cCCchhHHHHHHH
Q 014600           24 WSVLYYGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDR----FGHFKIWHGAGSV   98 (422)
Q Consensus        24 ~~~~~y~~g~~~~~~~~~~~~~~l~~f~t~~-gls~~~~g~i~~i~~l~~ai~~p~~G~lsDr----~Grrrp~ll~g~i   98 (422)
                      ...+.|++..+...+..+....++|.|+++. |.|..++..+....-+.+++..++.|+++||    +.+|-.+.....+
T Consensus       273 p~vw~~~l~~~~~~lv~~~~~~~lpl~l~~~~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~~~~~~~~~~~~~~~~~  352 (495)
T KOG2533|consen  273 PGVWPFSLCYFFLKLVNYGFSYWLPLYLKSNGGYSELQANLLSTPYDVGGIVGLILAGYLSDRLKTIFARRLLFIVFLCL  352 (495)
T ss_pred             hhHHHHHHHHHHHhhccccHHHHHHHHHHcCCCcChHHhccccchHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            4567788888899998888899999999996 8999999999999999999999999999999    6666665555566


Q ss_pred             HHHHHHHHhh
Q 014600           99 LVAVSFSSVF  108 (422)
Q Consensus        99 ~~~i~~~~lf  108 (422)
                      ...++...+.
T Consensus       353 ~~~~g~~~l~  362 (495)
T KOG2533|consen  353 YAIIGAISLL  362 (495)
T ss_pred             HHHHHHHHHH
Confidence            6666644444

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=97.16  E-value=0.014  Score=59.84  Aligned_cols=133  Identities=11%  Similarity=-0.060  Sum_probs=85.4

Q ss_pred             HHHHHHHHHHh-CCChh----HHHHHHHHHHHHhhhhhhhhhhhhcccCCc----hhHH--HHHHHHHHHHHHHhhcCcc
Q 014600           44 FTYLLLFLTDI-GLSPR----GAAAVMLSGQIADGFATIFIGELIDRFGHF----KIWH--GAGSVLVAVSFSSVFGGCM  112 (422)
Q Consensus        44 ~~~l~~f~t~~-gls~~----~~g~i~~i~~l~~ai~~p~~G~lsDr~Grr----rp~l--l~g~i~~~i~~~~lf~~~~  112 (422)
                      .+.++.|..+. +.+..    ..+++.++..++-.+..|+..++-.|.+||    ++..  .+|.++.++++..+..   
T Consensus       292 ~s~l~l~~~~~~~~~~~~~~ip~~~~~~~n~~~iil~~p~~~~~~~~l~~~~~~~~~~~k~~~G~~l~~~~~~~~~~---  368 (475)
T TIGR00924       292 PTSLNFFADNNMHHEMLGMSVPVIWFQSLNPFWVVVGSPVLAMIWTRLGRKGKDPTTPLKFTLGMLFCGASFLTFAA---  368 (475)
T ss_pred             hhHHHHHHHHhccccccceEECHHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHH---
Confidence            34456666553 33322    277888889999899999877543333322    3333  5677777777654421   


Q ss_pred             CccccC---CccchhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCccchhhHHHHHHHHHHHHHHHHHHHHH
Q 014600          113 PCRILS---TSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAF  184 (422)
Q Consensus       113 p~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~al~~~~t~~~~eR~~l~~~~~~~~~ig~~l~~~~~~  184 (422)
                      ......   ..+.+|..+.+    ++.+++..+......++..+.++ ++.|++..+.......+|..+++.+..
T Consensus       369 ~~~~~~~~~~~s~~~~i~~~----~~~~~ge~~~~p~~~~~~~~~aP-~~~~g~~~g~~~l~~~~g~~l~~~~~~  438 (475)
T TIGR00924       369 SIWFADAGGLTSPWFMVLIY----LFQTLGELMISPLGLSWWTKIAP-QRLMGQMLGMWFLAQAMGSLLGGYLAT  438 (475)
T ss_pred             HHhhcCCCCccCHHHHHHHH----HHHHHHHHHHhHHHHHHHHHhCC-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            000000   12333333333    46888888999999999999986 678999999999888888888776554

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=97.15  E-value=0.00067  Score=68.50  Aligned_cols=67  Identities=16%  Similarity=0.224  Sum_probs=56.6

Q ss_pred             HHHHHHHHHHHHhCCChhHHHHHHHHHHHHhhhhhhhhhhhhcccCCchhHHHHHHHHHHHHHHHhh
Q 014600           42 CWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVF  108 (422)
Q Consensus        42 ~~~~~l~~f~t~~gls~~~~g~i~~i~~l~~ai~~p~~G~lsDr~Grrrp~ll~g~i~~~i~~~~lf  108 (422)
                      ...++++.|..+.|++++++|++.....++..+..|++|++.||+-||||.++.+.+......+++.
T Consensus        29 ~l~pll~vy~kQLGl~p~~~Gtl~g~~P~v~~L~~P~~g~~Adr~r~~r~lllgsl~~~v~a~fll~   95 (618)
T KOG3762|consen   29 SLFPLLAVYFKQLGLNPAVVGTLTGTLPLVEFLAAPLWGFLADRYRKRRPLLLGSLLLSVTATFLLV   95 (618)
T ss_pred             ccchHHHHHHHHcCCCHHHhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCchhHHHHHHHHHHHHhee
Confidence            4557888999999999999999999999999999999999999999999977666555555554443

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=97.12  E-value=0.0084  Score=60.27  Aligned_cols=139  Identities=10%  Similarity=0.073  Sum_probs=70.9

Q ss_pred             HHHHHHHHHHHHHHHHHh-CCChhHHHHHHHHHHHHhhhhhhhhhhhhcccCCchhHHHHHHHHHHHHHHHhhcCccCcc
Q 014600           37 DITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCR  115 (422)
Q Consensus        37 ~~~~~~~~~~l~~f~t~~-gls~~~~g~i~~i~~l~~ai~~p~~G~lsDr~Grrrp~ll~g~i~~~i~~~~lf~~~~p~~  115 (422)
                      .........+.|.++.+. |.++.+.|+..........+...+.+++.+|.+++|... .+.....++..++...  . .
T Consensus       231 ~~~~~~~~~~~P~~l~~~~g~s~~~~gl~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~-~~~~~~~ig~~l~~~~--~-~  306 (413)
T PRK15403        231 YIPMMSWVAVSPVILIDAGGMTTSQFAWTQVPVFGAVIVANAIVARFVKDPTEPRFIW-RAVPIQLVGLALLIVG--N-L  306 (413)
T ss_pred             HHHHHHHHHhChHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhHHH-HHHHHHHHHHHHHHHH--H-H
Confidence            333334445678888888 999999999887676676777888888776555544421 1222222222221100  0 0


Q ss_pred             ccCCccchhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCccchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 014600          116 ILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIV  186 (422)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~al~~~~t~~~~eR~~l~~~~~~~~~ig~~l~~~~~~~l  186 (422)
                      +.+  +.++.   ..+...+++.+.+....+..+..  +.+++.++++.++..+.....+..+++..+..+
T Consensus       307 ~~~--~~~~~---~~~~~~l~~~G~~~~~p~~~~~a--l~~~~~~~G~a~a~~~~~~~~~~~~~~~~~g~~  370 (413)
T PRK15403        307 LWP--HVWLW---SVLGTSLYAFGIGLIFPTLFRFT--LFSNNLPKGTVSASLNMVILMVMAVSVEIGRWL  370 (413)
T ss_pred             Hcc--ccHHH---HHHHHHHHHHHHHHHhHHHHHHH--hccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            001  11111   11122345555555544444211  223344577777766665555555555444433

>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]

Probab=97.05  E-value=0.053  Score=50.14  Aligned_cols=152  Identities=13%  Similarity=0.057  Sum_probs=87.2

Q ss_pred             HHHHHHHHHHHHhCCCh--hHHHHHHHHHHHHhhhhhhhhhhhhcccCCchhHHHHHHHHHHHHHHHhhcCccCccccCC
Q 014600           42 CWFTYLLLFLTDIGLSP--RGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILST  119 (422)
Q Consensus        42 ~~~~~l~~f~t~~gls~--~~~g~i~~i~~l~~ai~~p~~G~lsDr~Grrrp~ll~g~i~~~i~~~~lf~~~~p~~~~~~  119 (422)
                      ......+.+..+.+.+.  ...+.+.....+...+..++.|+++||+|||+.. ..+.....++......       .++
T Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~-~~~~~~~~~~~~~~~~-------~~~   91 (338)
T COG0477          20 LLSPALPLLLSTLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVL-IIGLLLFLLGTLLLAL-------APN   91 (338)
T ss_pred             hHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhhhhhhccccccchHHH-HHHHHHHHHHHHHHHh-------Ccc
Confidence            33345555566654444  5788899999998888889999999999998664 3444333333222211       111


Q ss_pred             ccchhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCccchhhHHHHHHH-HHHHHHHHHHHHHHHHHhhccCCCCCch
Q 014600          120 STLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNA-FTMVANLSLYAIAFIVFSVSTAKTHADL  198 (422)
Q Consensus       120 ~~~~~~~~~~~~~~~l~~~~~~~~~~p~~al~~~~t~~~~eR~~l~~~~~~-~~~ig~~l~~~~~~~l~~~~~~~g~~~~  198 (422)
                       ...   ..+.+.....+++.+.......++.++..++.++|+...+.... ...+|.++++.+...+...        .
T Consensus        92 -~~~---~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~  159 (338)
T COG0477          92 -VGL---ALLLILRLLQGLGGGGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGA--------L  159 (338)
T ss_pred             -chH---HHHHHHHHHHHhhhHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------H
Confidence             111   12222223356666777777888888886530367777776655 3555555555443333221        1


Q ss_pred             HHHHHHHHHHHHHHH
Q 014600          199 ENQYRWIAYSSIFIG  213 (422)
Q Consensus       199 ~~~~~~~~~i~~~i~  213 (422)
                      ..+|++.+.+.....
T Consensus       160 ~~~~~~~~~~~~~~~  174 (338)
T COG0477         160 LWGWRAAFLLAALLG  174 (338)
T ss_pred             hcchHHHHHHHHHHH
Confidence            236777554444433

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=97.03  E-value=0.015  Score=56.59  Aligned_cols=168  Identities=16%  Similarity=0.100  Sum_probs=95.7

Q ss_pred             chhHHHHHHHHHHHHHHHHHHh-CCChhHHHHHHHHHHHHhhhhhhhhhhhhcccCCchhHHHHHHHHHHHHHHHhhcCc
Q 014600           33 HMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGC  111 (422)
Q Consensus        33 ~~~~~~~~~~~~~~l~~f~t~~-gls~~~~g~i~~i~~l~~ai~~p~~G~lsDr~Grrrp~ll~g~i~~~i~~~~lf~~~  111 (422)
                      ++..+.+..+..+.+.+-...+ |++..+..++...-..-..+..-.+|.++||+||||-+.+-. ....+.-+.     
T Consensus        86 gwmad~m~~m~~s~i~~~l~~~w~~s~~q~~llt~~v~~gmllga~~w~l~~d~~grr~~f~~T~-l~t~v~~~i-----  159 (528)
T KOG0253|consen   86 GWMADAMEMMLLSLILPALDEVWGPSEGQAPLLTLSVFLGMLVGAMVWGLSADTIGRRKGFNLTF-LVTGVFGVI-----  159 (528)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHhhhhhhhhhhheehhhhhcchhhhhhH-HHHHHHHHh-----
Confidence            3444555555556666666667 988888888888887777888889999999999998865322 222211111     


Q ss_pred             cCccccCCccchhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 014600          112 MPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVST  191 (422)
Q Consensus       112 ~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~al~~~~t~~~~eR~~l~~~~~~~~~ig~~l~~~~~~~l~~~~~  191 (422)
                        .+.+|+  ..+..+.    ..+.+.+.+. ..--.++-.|-.+. .+|....-.. .+..+|.+....+....+..  
T Consensus       160 --s~~spn--f~~L~~f----~~l~~~g~gg-~pv~~~~yle~lp~-~~r~~~~V~~-~~waig~v~ea~law~vm~~--  226 (528)
T KOG0253|consen  160 --SGASPN--FASLCVF----RALWGFGVGG-LPVDSAIYLEFLPS-SHRWLLTVMS-FFWAIGQVFEALLAWGVMSN--  226 (528)
T ss_pred             --hcCCCC--eehhhHH----HHHHhccCCC-ccHhHHHHHHhccC-cCCCcchhHH-HHHHHHHHHHHHHHHHHHHh--
Confidence              012222  2222222    2345555544 22223445555553 4566554444 66777887777666555542  


Q ss_pred             CCCCCchHHHHHHHHHHHHHHHHHHHhhhhccccCcc
Q 014600          192 AKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPR  228 (422)
Q Consensus       192 ~~g~~~~~~~~~~~~~i~~~i~~i~~~i~~~~~~E~~  228 (422)
                              .||||.....+....+.. ..+++++|.+
T Consensus       227 --------~gwr~~l~~~~~pl~~~a-~f~~w~~ESp  254 (528)
T KOG0253|consen  227 --------FGWRYLLFTSSTPLMFAA-RFLVWVYESP  254 (528)
T ss_pred             --------hhHHHHHHHHHhHHHHHH-HHHhhcccCc
Confidence                    377776555544333332 3345677753

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=96.71  E-value=0.05  Score=54.66  Aligned_cols=138  Identities=6%  Similarity=-0.038  Sum_probs=75.2

Q ss_pred             chhHHHHHHHHHHHHHHHHHHh--CCChhHHHHHHHHHHHHhhhhhhhhhhhhcccCCchhHHHHHHHHHHHHHHHhhcC
Q 014600           33 HMLNDITAACWFTYLLLFLTDI--GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGG  110 (422)
Q Consensus        33 ~~~~~~~~~~~~~~l~~f~t~~--gls~~~~g~i~~i~~l~~ai~~p~~G~lsDr~Grrrp~ll~g~i~~~i~~~~lf~~  110 (422)
                      .+..........+|++.|..+.  +.+....+...........+...+.|++.||.++||. +.......++...+... 
T Consensus       241 ~f~yvg~e~~~~s~l~~y~~~~~~~~~~~~a~~~~~~~~~~~~vGR~~~~~l~~r~~~~~~-l~i~~~~~~~~~ll~~~-  318 (410)
T TIGR00885       241 QFFYVGVQIMCWTFIIQYAVRLIPGMTAGFAANYNIGAMVIFFISRFIGTWLISYLAAHKV-LMAYAIIGMALCLGSIF-  318 (410)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHH-HHHHHHHHHHHHHHHHH-
Confidence            3333333334557888888775  5666666666666667778888999999999999887 44445555544433321 


Q ss_pred             ccCccccCCccchhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014600          111 CMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFS  188 (422)
Q Consensus       111 ~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~al~~~~t~~~~eR~~l~~~~~~~~~ig~~l~~~~~~~l~~  188 (422)
                            .++  .. ....+    .+.+.+.+.......++..+..   .+|.+..+.......+|+.+.+.+.+.+.+
T Consensus       319 ------~~~--~~-~~~~l----~~~glf~s~~fp~i~sl~~~~~---g~~~~~~s~~l~~~~~Gga~~p~l~G~~~d  380 (410)
T TIGR00885       319 ------AGG--HV-GLYCL----TLCSAFMSLMFPTIYGIALKGL---GQDTKYGAAGLVMAIIGGGIVPPLQGFIID  380 (410)
T ss_pred             ------cCC--hH-HHHHH----HHHHHHHHHHHHHHHHHHHhhh---hhhhhhhHHHHHHHHhccchHHHHHHHHHH
Confidence                  111  11 11111    2344555544444555555543   234443333333444666666555544443

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=96.70  E-value=0.07  Score=54.62  Aligned_cols=156  Identities=10%  Similarity=-0.032  Sum_probs=84.9

Q ss_pred             HHHHHHHhhhhhhhhhhhhcccCCchhHHHHHHHHHHHHHHHhhc-CccCccccCC-------ccchhhhHHHHHHHHHH
Q 014600           65 MLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFG-GCMPCRILST-------STLKVETISYCVFAAIF  136 (422)
Q Consensus        65 ~~i~~l~~ai~~p~~G~lsDr~Grrrp~ll~g~i~~~i~~~~lf~-~~~p~~~~~~-------~~~~~~~~~~~~~~~l~  136 (422)
                      +....+...+.+.+.-.+.+|+|+||.+...+-++.++++...+. ..++.+..+.       ..........++...+.
T Consensus       311 l~~~s~~~~i~s~~l~~l~~~~g~~k~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  390 (477)
T TIGR01301       311 LMLNSVVLGITSIGMEKLCRGWGAGKRLWGIVNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASALIVFAIL  390 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccCcchhhHHHHHHHHHHh
Confidence            444444445555666777889996444444566666666554431 0000000000       00000001112222467


Q ss_pred             HHHHH-HHHhhhhhhhhhccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchHHHHHHHHHHHHHHHHH
Q 014600          137 NVGWA-ATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCC  215 (422)
Q Consensus       137 ~~~~~-~~~~p~~al~~~~t~~~~eR~~l~~~~~~~~~ig~~l~~~~~~~l~~~~~~~g~~~~~~~~~~~~~i~~~i~~i  215 (422)
                      ++.|+ ...+||.-+..+..++.++.+...++-+.+..+.+++.+...+++...+++    +    -.+.+.+-++.+++
T Consensus       391 Gi~~A~~~siPfal~s~~~~~~~~~~G~~mgilN~~I~lpQii~sl~~g~~~~~~g~----~----~~~~~~~~gv~~~~  462 (477)
T TIGR01301       391 GIPLAITYSIPFALASIRSSNLGAGQGLSMGVLNLAIVIPQIIVSLGSGPWDQLFGG----G----NLPAFVVGAVAAFV  462 (477)
T ss_pred             hHHHHHHHHHhHHHHHHHccccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHcCC----C----CeeHHHHHHHHHHH
Confidence            88887 556887544444332234458889999999999999988777776665531    1    13344455566666


Q ss_pred             HHhhhhccccCcc
Q 014600          216 FVGIFLSRTEEPR  228 (422)
Q Consensus       216 ~~~i~~~~~~E~~  228 (422)
                      ..+.+.+..|.++
T Consensus       463 aa~~~~~~~~~~~  475 (477)
T TIGR01301       463 SGLLALILLPRPR  475 (477)
T ss_pred             HHHHHHHhCCCCC
Confidence            6666676666643

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=96.68  E-value=0.054  Score=55.98  Aligned_cols=114  Identities=13%  Similarity=0.070  Sum_probs=74.1

Q ss_pred             HHHHHHHHHHHhhhhhhhhhhhhcccCCc----hhHHHHHHHHHHHHHHHhhcCccCccccC-C--ccchhhhHHHHHHH
Q 014600           61 AAAVMLSGQIADGFATIFIGELIDRFGHF----KIWHGAGSVLVAVSFSSVFGGCMPCRILS-T--STLKVETISYCVFA  133 (422)
Q Consensus        61 ~g~i~~i~~l~~ai~~p~~G~lsDr~Grr----rp~ll~g~i~~~i~~~~lf~~~~p~~~~~-~--~~~~~~~~~~~~~~  133 (422)
                      .+++..+..++-.+..|+.+++-+|.+||    +. +.+|.++.++++..+...  + .... +  .+.+|....|    
T Consensus       318 ~~~~~s~n~i~iil~~p~~~~~~~~l~~r~~~~~~-~~~G~~l~~l~f~~l~~~--~-~~~~~~~~vs~~~~~~~~----  389 (500)
T PRK09584        318 PEQYQALNPFWIMIGSPILAAIYNKMGDRLPMPHK-FAIGMVLCSGAFLVLPLG--A-KFANDAGIVSVNWLIASY----  389 (500)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHhCcCCCcHHH-HHHHHHHHHHHHHHHHHH--H-HhcCCCCccCHHHHHHHH----
Confidence            56667777777778888886665555544    33 456778888887654320  1 1000 0  1122232223    


Q ss_pred             HHHHHHHHHHHhhhhhhhhhccCCccchhhHHHHHHHHHHHHHHHHHHHH
Q 014600          134 AIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIA  183 (422)
Q Consensus       134 ~l~~~~~~~~~~p~~al~~~~t~~~~eR~~l~~~~~~~~~ig~~l~~~~~  183 (422)
                      .+.+++..+......++..+..| ++.|++..+.......+|+.+++.+.
T Consensus       390 ~l~~~ge~~~~p~g~s~~~~~aP-~~~rg~~~g~~~l~~a~g~~~~g~~~  438 (500)
T PRK09584        390 GLQSIGELMISGLGLAMVAQLVP-QRLMGFIMGSWFLTTAGAALIAGYVA  438 (500)
T ss_pred             HHHHHHHHHHhHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46788888888888999999886 68899999988777777776665544

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=96.57  E-value=0.0084  Score=62.14  Aligned_cols=168  Identities=13%  Similarity=-0.015  Sum_probs=83.8

Q ss_pred             HHHHHHHHHhCCChhHHHHHHHHHHHHhhhhhhhhhhhhcccCCchhHHHHHHHHHHHHHHHhhcCccCccccCCcc-ch
Q 014600           45 TYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTST-LK  123 (422)
Q Consensus        45 ~~l~~f~t~~gls~~~~g~i~~i~~l~~ai~~p~~G~lsDr~Grrrp~ll~g~i~~~i~~~~lf~~~~p~~~~~~~~-~~  123 (422)
                      .|.+.++.+.|.+... .....+..+...+..-+.+++.||+|||+. ++.+...+.++..++-.  ... ...... ..
T Consensus       316 ~Y~~~if~~~g~~~~~-~~~~~~~~~v~~~~t~~~~~lvd~~gRr~l-ll~s~~~m~~~~~~~~~--~~~-~~~~~~~~~  390 (513)
T KOG0254|consen  316 YYSTTIFKSAGLKSDT-FLASIILGVVNFLGTLVATYLVDRFGRRKL-LLFGAAGMSICLVILAV--VGV-FALYYPNSS  390 (513)
T ss_pred             eehHHHHHhcCCCCch-HHHHHHHHHHHHHHHHHHHHHHHHhccHHH-HHHhHHHHHHHHHHHHH--HHH-HhccCCCcc
Confidence            3555555555554321 222333333444444455899999999877 66788888887665431  110 010000 00


Q ss_pred             hhhHHHHH-HHHHHHHHHHHHHhhhh-hhhhhccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchHHH
Q 014600          124 VETISYCV-FAAIFNVGWAATQVAHM-SMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQ  201 (422)
Q Consensus       124 ~~~~~~~~-~~~l~~~~~~~~~~p~~-al~~~~t~~~~eR~~l~~~~~~~~~ig~~l~~~~~~~l~~~~~~~g~~~~~~~  201 (422)
                      ....+..+ ..+++-..++....|.. .+.+|+.+ .+-|++..++......+.+.+............          +
T Consensus       391 ~~~~~~~~~~~~~~v~~f~~g~g~v~w~~~sEifp-~~~r~~~~s~~~~~n~~~~~~v~~~~~~~~~~~----------~  459 (513)
T KOG0254|consen  391 KGAGWLAIVFLCLFIFSFAIGWGPVPWVIVSEIFP-LRLRSKGASLAVAVNWLWNFLISFFFPFITEAL----------G  459 (513)
T ss_pred             cchhHHHHHHHHHHHHHHhcccccchhhhhhccCc-HhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhc----------c
Confidence            00011111 11234344443333332 45677776 577888888877777766655543333332211          1


Q ss_pred             HHHHHHHHHHHHHHHHh-hhhccccCcc
Q 014600          202 YRWIAYSSIFIGCCFVG-IFLSRTEEPR  228 (422)
Q Consensus       202 ~~~~~~i~~~i~~i~~~-i~~~~~~E~~  228 (422)
                      ....+..++.++.+... ..++.++|.+
T Consensus       460 ~~~~f~~f~~~~~~~~~~fv~~~~pETk  487 (513)
T KOG0254|consen  460 IGGTFGYFGGICLLSLIIFVFFFVPETK  487 (513)
T ss_pred             ccchHHHHHHHHHHHHHHHheEEcccCC
Confidence            12233334444444444 5677888865

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=96.46  E-value=1.1  Score=44.72  Aligned_cols=128  Identities=13%  Similarity=0.055  Sum_probs=77.3

Q ss_pred             HHHHHHHHHh--CCChhHHH-HHHHHHHHHhhhhhhhhhhhhcccCCchhHHHHHHHHHHHHHHHhhcCccCccccCCcc
Q 014600           45 TYLLLFLTDI--GLSPRGAA-AVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTST  121 (422)
Q Consensus        45 ~~l~~f~t~~--gls~~~~g-~i~~i~~l~~ai~~p~~G~lsDr~Grrrp~ll~g~i~~~i~~~~lf~~~~p~~~~~~~~  121 (422)
                      +|+..|+++.  |++..++- -+.=+..=.....-.++..+.|..|- ||.++.+++...+...++-+       .  .+
T Consensus        24 Pfl~~yL~~~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l~Y-kpviil~~~~~i~t~~lll~-------~--~s   93 (412)
T PF01770_consen   24 PFLTPYLTGPDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYLRY-KPVIILQALSYIITWLLLLF-------G--TS   93 (412)
T ss_pred             ccchHHHcCCccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHHHH-------H--Cc
Confidence            6888888875  78776654 22222222233345577888897754 67777777776666554432       1  12


Q ss_pred             chhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014600          122 LKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFS  188 (422)
Q Consensus       122 ~~~~~~~~~~~~~l~~~~~~~~~~p~~al~~~~t~~~~eR~~l~~~~~~~~~ig~~l~~~~~~~l~~  188 (422)
                      ..+    .-+.-+.+++. +...+.|.+.+-...+ +++--++.++......+|..+++.++..++.
T Consensus        94 v~~----mq~~q~~yg~~-~a~evay~sYiys~v~-~~~yq~vts~~raa~l~g~~~s~~lgQllvs  154 (412)
T PF01770_consen   94 VLA----MQLMQFFYGLA-TAAEVAYYSYIYSVVD-KEHYQKVTSYTRAATLVGRFISSLLGQLLVS  154 (412)
T ss_pred             HHH----HHHHHHHHHHH-HHHHHHHHHHheeecC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            221    12112234443 3457788888877664 5555677877777778888888877765554

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=96.34  E-value=0.28  Score=48.60  Aligned_cols=160  Identities=12%  Similarity=0.048  Sum_probs=97.8

Q ss_pred             HHHHHh-CCChhHHHHHHHHHHHHhhhhhhhhhhhhcc-cCCchhHHHHHHHHHHHHHHHhhcCccCccccCCccchhhh
Q 014600           49 LFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDR-FGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVET  126 (422)
Q Consensus        49 ~f~t~~-gls~~~~g~i~~i~~l~~ai~~p~~G~lsDr-~Grrrp~ll~g~i~~~i~~~~lf~~~~p~~~~~~~~~~~~~  126 (422)
                      +|--++ |+++.+...+...-..-..+.-...|++..| .+++| +-.+|+...++++.++-. +-|     ..+.+ . 
T Consensus       233 Pygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~-~a~~G~~~~~~~f~lii~-a~~-----~~~~~-~-  303 (403)
T PF03209_consen  233 PYGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKR-TAALGCLLGALAFALIIL-AGP-----LGSPW-L-  303 (403)
T ss_pred             CchhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchH-HHHHHHHHHHHHHHHHHH-HHh-----cccch-H-
Confidence            445566 8998887777666666656666677888885 55554 577888888888766542 111     11222 1 


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhhhhhhccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchHHHHHHHH
Q 014600          127 ISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYRWIA  206 (422)
Q Consensus       127 ~~~~~~~~l~~~~~~~~~~p~~al~~~~t~~~~eR~~l~~~~~~~~~ig~~l~~~~~~~l~~~~~~~g~~~~~~~~~~~~  206 (422)
                        +.....+++++.+.+.+...+++.+++.+ ++.+...+.......++.-++..+++.+.+........+...+|..++
T Consensus       304 --~~~~~~l~G~g~G~f~vgals~mM~lt~~-~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~~~~~~~~~~~aY~~VF  380 (403)
T PF03209_consen  304 --FRPGVFLLGLGNGLFTVGALSLMMDLTSA-GRAGLFMGAWGAAQAIARGLGTFLGGALRDLVRALFGNSPALAYGVVF  380 (403)
T ss_pred             --HHHHHHHHHHhhhHHHHHHHHHHHhCCCC-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchHHHHHH
Confidence              11122468899999999999999999864 344544554445555555555555555555321111113567888888


Q ss_pred             HHHHHHHHHHHhhh
Q 014600          207 YSSIFIGCCFVGIF  220 (422)
Q Consensus       207 ~i~~~i~~i~~~i~  220 (422)
                      .+=+++.+++.++.
T Consensus       381 ~lEa~ll~~a~~ll  394 (403)
T PF03209_consen  381 ALEAVLLLAALVLL  394 (403)
T ss_pred             HHHHHHHHHHHHHH
Confidence            77666555555443

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=96.32  E-value=3.5e-05  Score=78.14  Aligned_cols=166  Identities=14%  Similarity=-0.003  Sum_probs=88.2

Q ss_pred             HHHHHHHHhCCChhHHHHHHHHHHHHhhhhhhhhhhhhcccCCchhHHHHHHHHHHHHHHHhhcCccCccccCCccchhh
Q 014600           46 YLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVE  125 (422)
Q Consensus        46 ~l~~f~t~~gls~~~~g~i~~i~~l~~ai~~p~~G~lsDr~Grrrp~ll~g~i~~~i~~~~lf~~~~p~~~~~~~~~~~~  125 (422)
                      |.+..+.+.|.+..  -....+..++..+...+...++||+|||+. ++.+....+++...+..   +.....+.+.++.
T Consensus       275 ~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~GRr~~-~i~~~~~~~~~~~~~~~---~~~~~~~~~~~~~  348 (451)
T PF00083_consen  275 YSPSIFENAGISNS--FLATLILGLVNFLGTLLAIFLIDRFGRRKL-LIIGLLLMAICSLILGI---IFFLGVSSSSWWS  348 (451)
T ss_pred             cccccccccccccc--cccccccccccccccccccccccccccccc-ccccccccccccccccc---ccccccccccccc
Confidence            33444444466655  112233345556667777899999999877 44666666665443310   0001111110001


Q ss_pred             hHHHHHHHHHHHHHHH-HHHhhhhhhhhhccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchHHHHHH
Q 014600          126 TISYCVFAAIFNVGWA-ATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYRW  204 (422)
Q Consensus       126 ~~~~~~~~~l~~~~~~-~~~~p~~al~~~~t~~~~eR~~l~~~~~~~~~ig~~l~~~~~~~l~~~~~~~g~~~~~~~~~~  204 (422)
                      .. .+.+..++...++ ........+.+|+.+ .+.|.+..++....+.+++.+.+.+.+.+.+..          +-..
T Consensus       349 ~~-~i~~~~l~~~~~~~g~~~~~~~~~~ElfP-t~~R~~~~~~~~~~~~i~~~i~~~~~~~~~~~~----------~~~~  416 (451)
T PF00083_consen  349 IL-SIVFLALFFAFFSLGWGPLPWIYTAELFP-TKVRSTGIGLSYAVGRIGGFIIPFLFPYLFNNL----------GGWG  416 (451)
T ss_pred             cc-cceeeeecccccccccccccccccccccc-ccccccccccccccccccccccccccccccccc----------cccc
Confidence            01 1111112323333 233344578899987 578998888877777777766554433332211          1122


Q ss_pred             HHHHHHHHHHHHHhhhhccccCccc
Q 014600          205 IAYSSIFIGCCFVGIFLSRTEEPRL  229 (422)
Q Consensus       205 ~~~i~~~i~~i~~~i~~~~~~E~~~  229 (422)
                      .+.+.+.++++..+++++++||.+.
T Consensus       417 ~~~i~~~~~~i~~i~~~~~lpET~g  441 (451)
T PF00083_consen  417 VFLIFAGVCLIAIIFVYFFLPETKG  441 (451)
T ss_pred             cchhhHHHHHHHHhheeEEEeeCCC
Confidence            3445556666777778899999753

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]

Probab=95.96  E-value=0.52  Score=47.88  Aligned_cols=43  Identities=7%  Similarity=0.036  Sum_probs=30.5

Q ss_pred             HHHHHHhhhhhhhhhccCCccchhhHHHHHHHHHHHHHHHHHHH
Q 014600          139 GWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAI  182 (422)
Q Consensus       139 ~~~~~~~p~~al~~~~t~~~~eR~~l~~~~~~~~~ig~~l~~~~  182 (422)
                      ..+-.+++...+.-.+-. ++.++.+++...++.+.|..++..+
T Consensus       131 l~ATQDIAVDGWALT~Ls-~~n~~~ASTcqtvG~~~Gyfls~tv  173 (544)
T PF13000_consen  131 LCATQDIAVDGWALTMLS-PENVGYASTCQTVGQTAGYFLSFTV  173 (544)
T ss_pred             HHccCCceeehhhhhhcC-hhhcchHHHHHHhHhhhhHHHHHHH
Confidence            344566777666666653 6778889998888888888776644

This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.67  E-value=0.022  Score=55.86  Aligned_cols=158  Identities=11%  Similarity=0.108  Sum_probs=88.5

Q ss_pred             HHHHHHHHHHh-CCChhHHHHHHHHHHHHhhhhhhhhhhhhcccCCchhHHHHHHHHHHHHHHHhhcCccCccccCCccc
Q 014600           44 FTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTL  122 (422)
Q Consensus        44 ~~~l~~f~t~~-gls~~~~g~i~~i~~l~~ai~~p~~G~lsDr~Grrrp~ll~g~i~~~i~~~~lf~~~~p~~~~~~~~~  122 (422)
                      -+-++.+..|. ..+..++|+.+.-+.+..++..++.|.+.||++..| |+....-+..++. .+.  ++|  +..+   
T Consensus       290 ePtlslwm~e~m~~p~w~~G~~fLp~~~~y~ig~~lfg~la~k~~~~~-wl~~~~gl~~~G~-~~~--~iP--~~~~---  360 (464)
T KOG3764|consen  290 EPTLSLWMLETMFTPGWEVGLAFLPASLSYAIGTNLFGKLADKYPHLR-WLLSLGGLATVGV-SSG--PIP--FATS---  360 (464)
T ss_pred             CcccHHHHHHhccCCCcceeeeecccccchhccCchHHHHHHhcCchh-HHHHHHHHHHHHH-Hhc--hhH--hhhh---
Confidence            34456677776 766669999999999999999999999999999766 6654333333332 222  234  1211   


Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCcc-----chhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCc
Q 014600          123 KVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNST-----SRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHAD  197 (422)
Q Consensus       123 ~~~~~~~~~~~~l~~~~~~~~~~p~~al~~~~t~~~~-----eR~~l~~~~~~~~~ig~~l~~~~~~~l~~~~~~~g~~~  197 (422)
                      +.. ++--  .+..+++-...+..+......+.+..+     --+.+.++......+|..+++.+++.+.          
T Consensus       361 ~~~-L~vp--~~~l~~~i~~~dasl~P~l~~lvd~rh~s~~~vYGsVyaIad~a~sla~a~GP~~gg~iv----------  427 (464)
T KOG3764|consen  361 IAQ-LWVP--NFGLGFGIGLADASLIPTLGYLVDPRHVSGFNVYGSVYAIADAAFSLAYAIGPTFGGSLV----------  427 (464)
T ss_pred             HHH-Hhhh--hHHHHHHHHHHHHHHhhhhHHhcchhhccccceeeeHHHHHHHHHHHhhhccccccchhe----------
Confidence            111 1111  111222222333333333333332212     2244555555555555555554443332          


Q ss_pred             hHHHHHHHHHHHHHHHHHHHhhhhcc
Q 014600          198 LENQYRWIAYSSIFIGCCFVGIFLSR  223 (422)
Q Consensus       198 ~~~~~~~~~~i~~~i~~i~~~i~~~~  223 (422)
                      ...||.|...++++..++..-++.+.
T Consensus       428 ~~iGF~wl~~iig~~n~iyapvl~ll  453 (464)
T KOG3764|consen  428 EAIGFEWLMTIIGILNLIYAPVLLLL  453 (464)
T ss_pred             eehhHHHHHHHHHHHHHHHHHHHHHH
Confidence            34689999888888877766665443

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=95.63  E-value=0.045  Score=53.33  Aligned_cols=135  Identities=9%  Similarity=-0.031  Sum_probs=78.4

Q ss_pred             HHHHHHhhhhhhhhhhhhcccCCchhHHHHHHHHHHHHHHHhhcCccCccccCCccchhhhHHHHHHHHHHHHHHHHHHh
Q 014600           66 LSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQV  145 (422)
Q Consensus        66 ~i~~l~~ai~~p~~G~lsDr~Grrrp~ll~g~i~~~i~~~~lf~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  145 (422)
                      .+..+...=+..+.|++.||+|||+. |-...+++++..++++. |.    .++   .+. +..    +....+-+....
T Consensus       388 litslaefPGlLIt~~iverlGRKkT-Mal~l~~f~iflfll~~-c~----~rn---~~t-vll----f~arafisg~fq  453 (528)
T KOG0253|consen  388 LITSLAEFPGLLITGVIVERLGRKKT-MALSLILFGIFLFLLTT-CK----TRN---AYT-VLL----FTARAFISGAFQ  453 (528)
T ss_pred             HHHHHhhCCchhHHHHHHHHhcchhH-HHHHHHHHHHHHHHHHH-hc----Ccc---hhH-HHH----HHHHHHHhchhe
Confidence            44555555566789999999999999 66777888887777664 21    111   111 111    122222232222


Q ss_pred             hhhhhhhhccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchHHHHHHHHHHHHHHHHHHHhhhhcccc
Q 014600          146 AHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTE  225 (422)
Q Consensus       146 p~~al~~~~t~~~~eR~~l~~~~~~~~~ig~~l~~~~~~~l~~~~~~~g~~~~~~~~~~~~~i~~~i~~i~~~i~~~~~~  225 (422)
                      ..+.+.||..+ ..-|+...+......-+|+++.+.+.  +..-.          .-.....+.+..+++..+..+++--
T Consensus       454 vaYvYtPEVyP-TavRatgvGtcSsmaRIggI~~p~iA--~~~e~----------s~sl~i~vy~~~~ilagIavcffPi  520 (528)
T KOG0253|consen  454 VAYVYTPEVYP-TAVRATGVGTCSSMARIGGIFSPVIA--MRAEL----------STSLPIFVYGALFILAGIAVCFFPI  520 (528)
T ss_pred             EEEEecCcccc-hhhhhcchhhhhhHHhhhhhhhhHHH--HHhcc----------ceeehHHHHHHHHHHHHHHheeeee
Confidence            33567888876 46788777777777788888877654  21110          1112334455666666666666644


Q ss_pred             Cc
Q 014600          226 EP  227 (422)
Q Consensus       226 E~  227 (422)
                      |+
T Consensus       521 Et  522 (528)
T KOG0253|consen  521 ET  522 (528)
T ss_pred             cc
Confidence            43

>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions

Probab=95.10  E-value=4.7  Score=41.47  Aligned_cols=122  Identities=11%  Similarity=0.077  Sum_probs=65.9

Q ss_pred             hhhhhhhhccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHh-hccCCCCCc--hHHHHHHHHHHHHHHHHHHHhhhhc
Q 014600          146 AHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFS-VSTAKTHAD--LENQYRWIAYSSIFIGCCFVGIFLS  222 (422)
Q Consensus       146 p~~al~~~~t~~~~eR~~l~~~~~~~~~ig~~l~~~~~~~l~~-~~~~~g~~~--~~~~~~~~~~i~~~i~~i~~~i~~~  222 (422)
                      -++++.+|.++ .+|-.|....-..++++|.++++.+...+.. .......+.  +.......+.+..+.+++...+. .
T Consensus       164 LFW~fAN~itt-~~eAKRfYpl~g~ganigli~sG~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~v~~~g~~i~~~~-~  241 (491)
T PF03219_consen  164 LFWGFANEITT-VEEAKRFYPLFGLGANIGLIFSGQLTSYFSSFLRKSLPAGVDAWELSLNSLMGIVLILGIVIILLY-R  241 (491)
T ss_pred             HHHHHHHhcCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccHhHHHHHHHHHHHHHHHHHHHHH-H
Confidence            46899999886 6788888888888999998887766655544 111110011  11112222222223333322222 2


Q ss_pred             cccC-----ccc------ccccCCCcchhhhHHHHHHhHHHHHHHHHHHHHHHHHHhh
Q 014600          223 RTEE-----PRL------KMGLRGNSHARISWAYWFKKILYYQVALVYMLTRLVVNVS  269 (422)
Q Consensus       223 ~~~E-----~~~------~~~~~~~~~~~~~~~~~~~n~~f~~~~~~~~~~~~~~~~~  269 (422)
                      ...+     +..      +++++++.+.+++++.++|+|....+.+.-++.+...+.+
T Consensus       242 ~~~~~vl~~~~~~~~~~~~kk~k~k~s~~es~k~l~kS~yL~~Ia~lvi~Ygi~inLv  299 (491)
T PF03219_consen  242 YMNKNVLTDPRFYPSAKKKKKKKPKMSLKESFKLLLKSKYLLCIALLVIAYGISINLV  299 (491)
T ss_pred             HHHHHccCccccchhhhcccccCCCccHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHH
Confidence            2221     111      1111334567789999999998776655555555544433

One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=94.74  E-value=5.4  Score=40.35  Aligned_cols=51  Identities=24%  Similarity=0.269  Sum_probs=32.3

Q ss_pred             HHHHHHHHHHHHHHHHh-C---CChhHHHHHHHHHHHHhhhhhhhhhhhhcccCCchh
Q 014600           38 ITAACWFTYLLLFLTDI-G---LSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKI   91 (422)
Q Consensus        38 ~~~~~~~~~l~~f~t~~-g---ls~~~~g~i~~i~~l~~ai~~p~~G~lsDr~Grrrp   91 (422)
                      ...-++..-.+.|+.+. .   +.++..|+..   .+...+..|.+|.+.||.-|.|.
T Consensus        16 w~dR~w~Fa~~L~L~~i~p~sLl~~siygl~~---~~~~~~f~~~vG~~iD~~~Rl~~   70 (432)
T PF06963_consen   16 WGDRMWEFAVPLFLISIFPGSLLPVSIYGLVR---SLSAILFGPWVGRWIDRSPRLKV   70 (432)
T ss_pred             HHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHH---HHHHHHhhHHHHHHHhCCcchhh
Confidence            33344555567777776 3   2344445444   44455688999999999877665

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>TIGR00805 oat sodium-independent organic anion transporter

Probab=94.20  E-value=0.089  Score=56.03  Aligned_cols=75  Identities=17%  Similarity=0.217  Sum_probs=54.0

Q ss_pred             eeccchhHHHHHHHHHHHHHHHHHHh-CCChhHHHHHHHHHHH-HhhhhhhhhhhhhcccCCc-hhHHHHHHHHHHHH
Q 014600           29 YGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQI-ADGFATIFIGELIDRFGHF-KIWHGAGSVLVAVS  103 (422)
Q Consensus        29 y~~g~~~~~~~~~~~~~~l~~f~t~~-gls~~~~g~i~~i~~l-~~ai~~p~~G~lsDr~Grr-rp~ll~g~i~~~i~  103 (422)
                      ..+..+..........+|+|.|+.+. |+++.++|++..+..+ ..++..++.|+++||++++ |..+.++.+...++
T Consensus       335 ~~l~~~~~~~~~~~~~~~lP~yl~~~~g~s~~~ag~l~~~~~i~~~~vG~~l~G~l~~r~~~~~~~~~~~~~~~~~~~  412 (633)
T TIGR00805       335 VILAQVIDSLAFNGYITFLPKYLENQYGISSAEANFLIGVVNLPAAGLGYLIGGFIMKKFKLNVKKAAYFAICLSTLS  412 (633)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHhhhhhhhHHHHHHhhhhheeeeecccHHHHHHHHHHHHHHH
Confidence            44444444555556668999999987 9999999999987766 4578899999999999843 44444454444444

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans

Probab=94.20  E-value=2.1  Score=36.76  Aligned_cols=100  Identities=15%  Similarity=0.064  Sum_probs=64.4

Q ss_pred             HHHhhhhhhhhhhhhcccCCchhHHHHHHHHHHHHHHHhhcCccCccccCCccchhhhHHHHHHHHHHHHHHHHHHhhhh
Q 014600           69 QIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHM  148 (422)
Q Consensus        69 ~l~~ai~~p~~G~lsDr~Grrrp~ll~g~i~~~i~~~~lf~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~  148 (422)
                      -..-++..++...+.+|.|.|+. +++|.+...+-....+.   |     +   .   ..+....++.+++.+...++..
T Consensus        47 Y~~~~~s~l~~P~iv~~lg~K~s-m~lg~~~y~~y~~~~~~---~-----~---~---~~l~~~s~l~G~~~a~lW~aqg  111 (156)
T PF05978_consen   47 YGSFAISCLFAPSIVNKLGPKWS-MILGSLGYAIYIASFFY---P-----N---S---YTLYPASALLGFGAALLWTAQG  111 (156)
T ss_pred             HHHHHHHHHhHHHHHHHHhhHHH-HHHHHHHHHHHHHHHHh---h-----h---H---HHHHHHHHHHhhhhHHhhHhhh
Confidence            33344555666777889999877 66777776654333232   2     1   1   1122233578899999999999


Q ss_pred             hhhhhccCCccchhhHHHHHHHHHHHHHHHHHHHHH
Q 014600          149 SMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAF  184 (422)
Q Consensus       149 al~~~~t~~~~eR~~l~~~~~~~~~ig~~l~~~~~~  184 (422)
                      ..+.+..+ +++|++-.++.......+.++++++..
T Consensus       112 ~ylt~~s~-~~~~~~~~~ifw~i~~~s~i~G~~~~~  146 (156)
T PF05978_consen  112 TYLTSYST-EETIGRNTGIFWAIFQSSLIFGNLFLF  146 (156)
T ss_pred             HHHHHcCC-HHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence            98888764 677888777766666666666665543

UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=93.50  E-value=0.62  Score=47.75  Aligned_cols=149  Identities=15%  Similarity=0.074  Sum_probs=88.7

Q ss_pred             eeeeccchhHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHhhhhhhhhhhhhcccCCchhHHHHHHHHHHHHHHH
Q 014600           27 LYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSS  106 (422)
Q Consensus        27 ~~y~~g~~~~~~~~~~~~~~l~~f~t~~gls~~~~g~i~~i~~l~~ai~~p~~G~lsDr~Grrrp~ll~g~i~~~i~~~~  106 (422)
                      +.+.+-.+..+....++.+|+--++.|.|-.+...|..-.+.-.-....-++.+++..|.|+-|. +..|.....+=+..
T Consensus       374 llff~~av~mG~g~~lv~tFLfWHled~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv~v-~~lgLa~~~~Rf~~  452 (618)
T KOG3762|consen  374 LLFFFVAVVMGAGVGLVFTFLFWHLEDLGGIKTLFGVVSALCHAGEILFYFFSFKLIEKIGHVNV-MYLGLACNVGRFLY  452 (618)
T ss_pred             EehhHHHHHHHHHHHHHHHHHHHHHhhcCCcceeeeehhhhhccchHHHHHHHHHHHHHhcccce-eeehhhHHHHHHHH
Confidence            33444444445555666677655566667777777766666666666677889999999999887 43454444443322


Q ss_pred             hhcCccCccccCCccchhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCccchhhHHHH-HHHHHHHHHHHHHHHHHH
Q 014600          107 VFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSC-RNAFTMVANLSLYAIAFI  185 (422)
Q Consensus       107 lf~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~al~~~~t~~~~eR~~l~~~-~~~~~~ig~~l~~~~~~~  185 (422)
                      +=   .    ..  +.|.. +   -+-++.++.++.+.....+.++...+ |+-|..+.+. +..+-++|--+++++++.
T Consensus       453 ~S---~----L~--n~W~v-L---Pieilqgit~aliWaa~~sY~s~vaP-p~l~at~Q~l~~g~f~GlG~g~GslIGG~  518 (618)
T KOG3762|consen  453 YS---Y----LQ--NPWMV-L---PIEILQGITHALIWAAIISYASHVAP-PGLRATAQGLLQGIFHGLGKGLGSLIGGF  518 (618)
T ss_pred             HH---H----hc--Cchhe-e---eHHHHHHHHHHHHHHHHHHHHHhhCC-CcchHHHHHHHHHHhcccCcchhhhhhhh
Confidence            11   0    11  11211 1   11235667777777777788888777 5666666554 444556666666666666


Q ss_pred             HHhhc
Q 014600          186 VFSVS  190 (422)
Q Consensus       186 l~~~~  190 (422)
                      ++..+
T Consensus       519 ~v~~f  523 (618)
T KOG3762|consen  519 VVERF  523 (618)
T ss_pred             hheee
Confidence            66654

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.08  E-value=4.8  Score=40.95  Aligned_cols=102  Identities=12%  Similarity=-0.070  Sum_probs=61.9

Q ss_pred             HHHHHHHhhhhhhhhhhhhcccCCchhHHHHHHHHHHHHHHHhhcCccCccccCCccchhhhHHHHHHHHHHHHHHHHHH
Q 014600           65 MLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQ  144 (422)
Q Consensus        65 ~~i~~l~~ai~~p~~G~lsDr~Grrrp~ll~g~i~~~i~~~~lf~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  144 (422)
                      ..+--..-.+...+.+.+.|+.|.|-. |.+|+.....--...+.   |     +  .+   ..| +-..+.|+++++..
T Consensus        56 ~aiiY~~ftv~~l~~psiv~~i~~K~~-lv~ga~~y~~f~~gfl~---~-----N--~y---~~y-fssallG~Gaallw  120 (461)
T KOG3098|consen   56 QAIIYAFFTVSCLFAPSIVNFLGPKWA-LVIGATCYAAFPLGFLF---P-----N--SY---YLY-FSSALLGFGAALLW  120 (461)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHhhHHHH-HHHHhHHHHHHHHHHHh---c-----c--hH---HHH-HHHHHhhhhHHhee
Confidence            444444556667788889999998766 66777666654333221   1     2  11   112 23467899999888


Q ss_pred             hhhhhhhhhccCCccchhhHHHHHHHHHHHHHHHHHHH
Q 014600          145 VAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAI  182 (422)
Q Consensus       145 ~p~~al~~~~t~~~~eR~~l~~~~~~~~~ig~~l~~~~  182 (422)
                      ..+...+.+..+ ++.+.+-.++.......+.+++++.
T Consensus       121 ~GqG~ylt~~st-~~tie~Nisi~Wai~~~~li~Ggi~  157 (461)
T KOG3098|consen  121 TGQGGYLTSNST-RETIERNISIFWAIGQSSLIIGGII  157 (461)
T ss_pred             cccceehhhcCC-hhhHHHHHHHHHHHHHHHHHhhhHh
Confidence            888888877654 3444555555545555556665543

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=92.15  E-value=2  Score=42.64  Aligned_cols=146  Identities=10%  Similarity=-0.021  Sum_probs=78.5

Q ss_pred             eeeeeeeccchhHHHHHHHHHHHHHHHHHHh-CCChhHHHHHHHHHHHHhhhhhhhhhhhhcccCCchhHHHHHHHHHHH
Q 014600           24 WSVLYYGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAV  102 (422)
Q Consensus        24 ~~~~~y~~g~~~~~~~~~~~~~~l~~f~t~~-gls~~~~g~i~~i~~l~~ai~~p~~G~lsDr~Grrrp~ll~g~i~~~i  102 (422)
                      ++...+.++.|.--.......++++.|..|. |++..+.+..++.....-.++--+.-++..|+-..|-..+.+.+...+
T Consensus       236 ~~~~~gvl~~FlYVG~Eva~gsfl~~y~~~~~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~~~~~k~Laf~a~~~ill  315 (422)
T COG0738         236 KHLRLGVLAIFLYVGAEVAIGSFLVSYLEELLGLNEQQAAYYLSFFWVGFMVGRFIGSALMSRIKPEKYLAFYALIAILL  315 (422)
T ss_pred             hHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHH
Confidence            3344455555555555566778999999997 999998888877776665555544444555666556544443333333


Q ss_pred             HHHHhhcCccCccccCCccchhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCccchhhHHHHHHHHHHHHHHHHHHH
Q 014600          103 SFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAI  182 (422)
Q Consensus       103 ~~~~lf~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~al~~~~t~~~~eR~~l~~~~~~~~~ig~~l~~~~  182 (422)
                      .....+.          .+.+   ..|.+  .+.+...+.....-.++..+..+   |.++..+--..+..+|+.+.+.+
T Consensus       316 ~~~~~l~----------~g~v---~~~~l--~~ig~F~simfPTIfslal~~l~---~~ts~~s~~l~maivGGAiiP~l  377 (422)
T COG0738         316 LLAVALI----------GGVV---ALYAL--FLIGLFNSIMFPTIFSLALKNLG---EHTSVGSGLLVMAIVGGAIIPPL  377 (422)
T ss_pred             HHHHHHh----------cChH---HHHHH--HHHHHHhHHHHHHHHHHHHhccC---ccccccceeeeeheecchHHHHH
Confidence            3322221          1111   22221  23455555555445555555443   33444444344556666665544


Q ss_pred             HHHHH
Q 014600          183 AFIVF  187 (422)
Q Consensus       183 ~~~l~  187 (422)
                      -+.+.
T Consensus       378 ~G~i~  382 (422)
T COG0738         378 QGVIA  382 (422)
T ss_pred             HHHHH
Confidence            44443

>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters

Probab=92.13  E-value=2  Score=42.33  Aligned_cols=115  Identities=10%  Similarity=-0.086  Sum_probs=67.3

Q ss_pred             HHHHHHHHHHHHHHhhcCccCccccCCccchhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCc--cchhhHHHHHHH
Q 014600           93 HGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNS--TSRVVLTSCRNA  170 (422)
Q Consensus        93 ll~g~i~~~i~~~~lf~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~al~~~~t~~~--~eR~~l~~~~~~  170 (422)
                      +++|++...++..++...+.|....++.+   ....|+ ...+..+|.+.+-....++.+|..+++  ++|.+..++-..
T Consensus         4 I~~g~~~~~~G~~ll~l~~~~~~~~~~~~---~~~~~~-gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~   79 (372)
T PF00854_consen    4 ILLGSIVYLLGHVLLTLSAIPPSLPSGIQ---LGLFYI-GLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYW   79 (372)
T ss_dssp             HHHHHHHHHHHHHH--HHHTSSSC---------CHHHH-HHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHhHHHHhcchhhhhHH---HHHHHH-HHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHH
Confidence            45678888888776432223422111111   112222 223567888888888899999998754  456778888889


Q ss_pred             HHHHHHHHHHHHHHHHHhhccCCCCCchHHHHHHHHHHHHHHHHHHHhhhh
Q 014600          171 FTMVANLSLYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFL  221 (422)
Q Consensus       171 ~~~ig~~l~~~~~~~l~~~~~~~g~~~~~~~~~~~~~i~~~i~~i~~~i~~  221 (422)
                      ..++|.+++.... +.++         +..+|.+.+.+.++..++..+..+
T Consensus        80 ~in~G~~~~~~~~-~~i~---------~~~~~~~~f~i~~~~~~~~~~~f~  120 (372)
T PF00854_consen   80 GINIGSLFSPTLV-PYIQ---------QNYGWFLGFGIPAIGMLLALIVFL  120 (372)
T ss_dssp             HHHHHHHHHHHCC-CHHH---------HCS-HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhhhhHhhcccc-hhhc---------cccchhhhhhHHHHHHHHHHHHHH
Confidence            9999998876443 2222         234787777766665555544333

The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=90.97  E-value=4.7  Score=41.55  Aligned_cols=118  Identities=16%  Similarity=0.105  Sum_probs=75.0

Q ss_pred             HHHHHHHHHHHhhhhhhhhhhhhcccCC--chh---H-HHHHHHHHHHHHHHhhcCccCccccCCccchhhhHHHHHHHH
Q 014600           61 AAAVMLSGQIADGFATIFIGELIDRFGH--FKI---W-HGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVETISYCVFAA  134 (422)
Q Consensus        61 ~g~i~~i~~l~~ai~~p~~G~lsDr~Gr--rrp---~-ll~g~i~~~i~~~~lf~~~~p~~~~~~~~~~~~~~~~~~~~~  134 (422)
                      .++..++.+++-.+..|+.+++=.|.+|  |.|   . +-+|.++.++++..+..+....+-....+.+|....|    .
T Consensus       310 ~~~~qslNp~~ii~l~P~~a~lw~~l~~~~~~~s~~~Kfa~g~~~~g~~f~~l~~~~~~~~~~~~~s~~wl~~~~----~  385 (493)
T PRK15462        310 TAMFQSINAFAVMLCGVFLAWVVKESVAGNRTVRIWGKFALGLGLMSAGFCILTLSARWSAMYGHSSLPLMVLGL----A  385 (493)
T ss_pred             HHHHHhHhHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHH----H
Confidence            5567788899999999999998777643  222   1 3467888888876654211000000112334443333    3


Q ss_pred             HHHHHHHHHHhhhhhhhhhccCCccchhhHHHHHHHHH-HHHHHHHHHHH
Q 014600          135 IFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFT-MVANLSLYAIA  183 (422)
Q Consensus       135 l~~~~~~~~~~p~~al~~~~t~~~~eR~~l~~~~~~~~-~ig~~l~~~~~  183 (422)
                      ++.++.-+....-.++++++.| ++-|++..+...... .+|+.+++.+.
T Consensus       386 ~~t~gEl~~sPvgls~~~~laP-~~~~g~~mg~w~l~~~~~~~~~~g~~~  434 (493)
T PRK15462        386 VMGFAELFIDPVAMSQITRIEI-PGVTGVLTGIYMLLSGAIANYLAGVIA  434 (493)
T ss_pred             HHHHHHHHHChHHHHHHHHhCh-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5777777888888899999986 678899888876533 56666655443

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=89.47  E-value=1.6  Score=43.96  Aligned_cols=137  Identities=11%  Similarity=-0.095  Sum_probs=77.0

Q ss_pred             hhhhhhhhhcccCCchhHHHHHHHHHHHHHHHhhcCccCccccCCccchhhhHHHHHHHHHHHHHHHH-HHhhhhhhhhh
Q 014600           75 ATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAA-TQVAHMSMVNC  153 (422)
Q Consensus        75 ~~p~~G~lsDr~Grrrp~ll~g~i~~~i~~~~lf~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~p~~al~~~  153 (422)
                      .-++..+++|+.|||+. .+.|..++.+.+..+-   .|.+.  ..+.....+.|.+    ..+...+ =+.......+|
T Consensus       364 Gyw~tv~~id~iGRk~i-q~~GF~~~~i~~~~~~---~~y~~--~~~~~Gf~v~y~l----~~ff~NFGPn~ttfivpaE  433 (538)
T KOG0252|consen  364 GYWFTVYFIDIIGRKYI-QLMGFFIMTIFFFVIA---GPYNQ--LENTIGFVVLYSL----TFFFGNFGPNATTFIVPAE  433 (538)
T ss_pred             ceeEEEEEeehhhhHHH-HHhhHHHHHHHHHHHc---CCccc--ccccCceeehHHH----HHHHHhcCCCceeEEeehh
Confidence            34566778999999876 5567777766654432   34331  1122222233332    1111111 01112233456


Q ss_pred             ccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchHHHHHHHHHHHHHHHHHHHhhhhccccCcc
Q 014600          154 ITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPR  228 (422)
Q Consensus       154 ~t~~~~eR~~l~~~~~~~~~ig~~l~~~~~~~l~~~~~~~g~~~~~~~~~~~~~i~~~i~~i~~~i~~~~~~E~~  228 (422)
                      .++ .+-|+...++....+-+|++++.....++.+.-  +   -...+.++++++.+...++..++.++. +|.+
T Consensus       434 ~FP-arvR~t~hGIsAA~GK~GAivg~~~F~~~t~~~--y---p~~~g~~~v~~i~~~~~~~gi~~T~l~-pEtk  501 (538)
T KOG0252|consen  434 IFP-ARVRSTCHGISAASGKAGAIVGAFGFLYLTDHN--Y---PPNIGVRNVFIILAGCMLLGILFTLLI-PETK  501 (538)
T ss_pred             hch-HHHhhhhhhHHHHhccchHHHHHHHhhHhhhcc--C---CccccchHHHHHHHHHHHHhHheeEEe-eccc
Confidence            555 467888888888888888888776555554311  0   012467888888888777776666554 4643

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=89.28  E-value=7.9  Score=40.85  Aligned_cols=124  Identities=15%  Similarity=0.172  Sum_probs=68.7

Q ss_pred             HHHHHHHHh-CCCh---hHHHHHHHHHHHHhhhhhhhhhhhhcccCCchhHHHHHHHHHHHHHHHhhcCccCccccCCcc
Q 014600           46 YLLLFLTDI-GLSP---RGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTST  121 (422)
Q Consensus        46 ~l~~f~t~~-gls~---~~~g~i~~i~~l~~ai~~p~~G~lsDr~Grrrp~ll~g~i~~~i~~~~lf~~~~p~~~~~~~~  121 (422)
                      +.|.....+ +-++   ...+++.....+...+...+.|.+.-+.+|-|..++++.+++.+.+.++-. .-|    ++.+
T Consensus       332 l~p~~~~~vf~~d~~~~~~~~~~s~~~~fg~~~g~~i~g~l~~~ir~~Kw~li~~~~~~ta~~Gama~-~~~----~n~~  406 (599)
T PF06609_consen  332 LWPQQVVNVFGSDPISITEIGWISSPVGFGSCAGAVILGLLFSKIRHIKWQLIFGSVLMTAFCGAMAA-VRP----DNKN  406 (599)
T ss_pred             HHHHHHhhhccCCCcccceeehhhhhHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHH-ccC----CCcc
Confidence            334443444 4443   346666666677667777889999988888777677887777665444432 112    1222


Q ss_pred             chhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCccchhhHHHHHHHHHHHHHHHHHH
Q 014600          122 LKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYA  181 (422)
Q Consensus       122 ~~~~~~~~~~~~~l~~~~~~~~~~p~~al~~~~t~~~~eR~~l~~~~~~~~~ig~~l~~~  181 (422)
                      .+   +.+.   ++.+++.+....|........++ +++-+...+.....-.+|+.++..
T Consensus       407 ~~---i~~~---~l~g~giG~~~~~~~~~~ql~~p-~~~ig~a~gL~~s~R~~GGsIg~a  459 (599)
T PF06609_consen  407 AA---IAFL---VLAGFGIGGILVPAIVIAQLIVP-DEDIGTATGLTGSIRSIGGSIGYA  459 (599)
T ss_pred             hH---HHHH---HHHHHhHHHHHHHHHHeeEeeeC-chHHHHHHHHHHHHHHHhhHHHHH
Confidence            22   2222   35666667666666655555444 455555554433333444434333

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters

Probab=89.25  E-value=2.9  Score=31.86  Aligned_cols=64  Identities=19%  Similarity=0.154  Sum_probs=48.8

Q ss_pred             HHHHHHHHHHHhCCChhHHHHHHHHHHHHhhhhhhhhhhhhcccCCchhHHHHHHHHHHHHHHHh
Q 014600           43 WFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSV  107 (422)
Q Consensus        43 ~~~~l~~f~t~~gls~~~~g~i~~i~~l~~ai~~p~~G~lsDr~Grrrp~ll~g~i~~~i~~~~l  107 (422)
                      .++.+|....|.++|..+.|++-+..-+-..+......++.+|..+|| .+..+.+...++...+
T Consensus        11 yTplLP~M~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~-~~~~~l~~~~~~~~~m   74 (85)
T PF06779_consen   11 YTPLLPLMQADGGLSLSQAGWLASANYLGYLVGALLASRLPRHSRPRR-LLRAGLLLTVLSTAAM   74 (85)
T ss_pred             HHhHhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHH-HHHHHHHHHHHHHHHH
Confidence            345566666666999999999999999999999999999888754444 4667777777666554

Note that many members are hypothetical proteins.

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=89.17  E-value=2.1  Score=43.37  Aligned_cols=131  Identities=8%  Similarity=0.011  Sum_probs=72.3

Q ss_pred             CChhHHHHHHHHHHHHhhhhhhhhhhhhcccCCchhHHHHHHHHHHHHHHHhhcCccCccccCCccchhhhHHHHHHHHH
Q 014600           56 LSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVETISYCVFAAI  135 (422)
Q Consensus        56 ls~~~~g~i~~i~~l~~ai~~p~~G~lsDr~Grrrp~ll~g~i~~~i~~~~lf~~~~p~~~~~~~~~~~~~~~~~~~~~l  135 (422)
                      +++...|.+..++.+...++--+..++--++.-|+. +.+..+..++....-.. .+. .+....+.. -..+++.-.++
T Consensus       252 fs~~f~~~~~~vg~~~~l~g~~~y~~~~~~~~~R~~-~~~t~~~~~~~~l~~~~-lv~-~~n~~~Gi~-d~~f~lgd~~l  327 (433)
T PF03092_consen  252 FSPSFYGTLSIVGSIASLLGILLYRKYFSNWSWRRI-FVVTTLVSVLASLFDLL-LVT-RWNLDLGIP-DQWFALGDTIL  327 (433)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHH-HHHHHHHHHHHhcccEE-EEE-EEeeeeCcC-CeEEEEEhHHH
Confidence            888888888887877776666655554434443443 33333333322111000 000 000000000 00111222245


Q ss_pred             HHHHHHHHHhhhhhhhhhccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 014600          136 FNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVST  191 (422)
Q Consensus       136 ~~~~~~~~~~p~~al~~~~t~~~~eR~~l~~~~~~~~~ig~~l~~~~~~~l~~~~~  191 (422)
                      ..+...+...|...+.+++.++ ..-+...+.-....++|..++..++..+...++
T Consensus       328 ~~~~~~i~~mP~lvl~a~lcP~-G~Egt~yall~s~~Nlg~~~s~~lg~~l~~~~~  382 (433)
T PF03092_consen  328 EEVIGMIAFMPSLVLAARLCPK-GSEGTVYALLASFSNLGSSVSSTLGAFLMELFG  382 (433)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCC-CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            6777778888999999999875 445556666666778888777777767766654

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=89.10  E-value=10  Score=38.33  Aligned_cols=125  Identities=15%  Similarity=0.136  Sum_probs=82.1

Q ss_pred             HHHHHHhCCChhHHHHHHHHHHHHhhhhhhhhhhhhcccCCchhHHHHHHH----HHHHHHHHhhcCccCccccCCcc-c
Q 014600           48 LLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSV----LVAVSFSSVFGGCMPCRILSTST-L  122 (422)
Q Consensus        48 ~~f~t~~gls~~~~g~i~~i~~l~~ai~~p~~G~lsDr~Grrrp~ll~g~i----~~~i~~~~lf~~~~p~~~~~~~~-~  122 (422)
                      ..|+...|+++..+|..-.++.+....+..+..++.+|.|..|. =+++..    +..++....|.   |     ..+ .
T Consensus       282 t~yl~~~G~s~~~igi~R~~gav~Gl~gT~~~p~l~~riGlvr~-G~~~l~~q~~~L~~~v~~~~~---~-----~~~~~  352 (432)
T PF06963_consen  282 TAYLKSQGYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRIGLVRA-GLWSLWWQWVCLALCVVSFWA---P-----GSPFS  352 (432)
T ss_pred             HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhh-HHHHHHHHHHHHHHHHHHHhc---C-----CCCch
Confidence            34444559999999999999999999999999999999997665 223332    22222222232   2     111 1


Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCccchhhHHHHHHHHHHHHHHHHHHH
Q 014600          123 KVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAI  182 (422)
Q Consensus       123 ~~~~~~~~~~~~l~~~~~~~~~~p~~al~~~~t~~~~eR~~l~~~~~~~~~ig~~l~~~~  182 (422)
                      ......++...++-.+|--.++....-++=|..+ ++||+.+++..+...++--++...+
T Consensus       353 ~~s~~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~-~~~Rg~v~gvq~sl~~lf~ll~~~~  411 (432)
T PF06963_consen  353 SISAYLLLGGIALSRIGLWSFDLAVTQIMQENVP-ESERGAVSGVQNSLQSLFELLSFVL  411 (432)
T ss_pred             hhHHHHHHHHHHHHHHHHHhhhHHHHHhhcccCC-HHHhhHHHHHHHHHHHHHHHHHHHH
Confidence            1111122222234557777777777777777654 7899999999999988887776544

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=88.68  E-value=26  Score=36.14  Aligned_cols=135  Identities=9%  Similarity=-0.098  Sum_probs=68.8

Q ss_pred             HhhhhhhhhhhhhcccCCchhHHHHHHHHHHHHHHHhhcCccCccccCCccc-hhhhHHHHHHHHHHHHHHHHHHhhhhh
Q 014600           71 ADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTL-KVETISYCVFAAIFNVGWAATQVAHMS  149 (422)
Q Consensus        71 ~~ai~~p~~G~lsDr~Grrrp~ll~g~i~~~i~~~~lf~~~~p~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~p~~a  149 (422)
                      .........+...||+|||.+. ..+.....++.....+  .+     .... +...+...    +-..+.+........
T Consensus       362 ~~~p~~~~~~~~~~~~gR~~~~-~~~~~~~~~~~~~~~~--~~-----~~~~~~~~~~~~~----~~~~~~~~~~~~~~~  429 (521)
T KOG0255|consen  362 VELPAYFRNGLLLPEFGRRPPL-FLSLFLAGIGLLLFGW--LP-----DDLGGWLHWILPL----LGKFFIGSAFNLIFL  429 (521)
T ss_pred             HHhhHHHHHHHHHHHhCcHHHH-HHHHHHHHHHHHHHHH--hh-----ccchhHHHHHHHH----HHHHHHHHHHHHHHH
Confidence            3333444447888999998774 4566666665544322  12     1111 11112222    111122211112245


Q ss_pred             hhhhccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchHHHHHHHHHHHHHHHHHHHhhhhccccCccc
Q 014600          150 MVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRL  229 (422)
Q Consensus       150 l~~~~t~~~~eR~~l~~~~~~~~~ig~~l~~~~~~~l~~~~~~~g~~~~~~~~~~~~~i~~~i~~i~~~i~~~~~~E~~~  229 (422)
                      ..+|+.++ .-|....+.-...+.+|+++++.+........         ....  ..+++..+.+...++....+|++.
T Consensus       430 ~~~el~pt-~~r~~~~~~~~~~~~~~~i~ap~~~~~~~~~~---------~~~~--~~~~~~~~~l~~~~~~~~lpet~~  497 (521)
T KOG0255|consen  430 YSAELIPT-VVRNTAVGAISAAARLGSILAPLFPLLLRQMF---------PLLG--LILFGWLALLLGLLSLLLLPETKG  497 (521)
T ss_pred             HHHhhccH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc---------ccch--HHHHHHHHHHHHHHHHhcCcccCC
Confidence            56677664 46888888888888888887765432211110         0111  111455566666666678888653

>COG3202 ATP/ADP translocase [Energy production and conversion]

Probab=87.87  E-value=35  Score=34.97  Aligned_cols=206  Identities=9%  Similarity=0.022  Sum_probs=103.7

Q ss_pred             CCChhHHHHHHHHHHH-HhhhhhhhhhhhhcccCCchhHHHHHHHHHHHHHHHhhcC-ccCcc--ccCC----------c
Q 014600           55 GLSPRGAAAVMLSGQI-ADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGG-CMPCR--ILST----------S  120 (422)
Q Consensus        55 gls~~~~g~i~~i~~l-~~ai~~p~~G~lsDr~Grrrp~ll~g~i~~~i~~~~lf~~-~~p~~--~~~~----------~  120 (422)
                      ...+..+..+-...-+ ...+..++.++++++.-|+|.+-.+.. .+. +++++|.. .-|..  +.++          .
T Consensus        57 ~~gae~I~FlK~~~vlP~avif~~iy~kl~~~lt~~~vF~~~~~-~F~-~fF~LFa~Vi~P~~~~~hp~~~~~~~~~~~~  134 (509)
T COG3202          57 RQGAESISFLKTWGVLPSAVIFTIIYQKLLNILTREKVFYIILG-FFL-GFFALFAFVIYPYKDILHPDPEFSRDLFADL  134 (509)
T ss_pred             cCcchhhHHHHHHHhchHHHHHHHHHHHHHhhcCHHHHHHHHHH-HHH-HHHHHHHHHHhccccccCCCHHHHHHHHhhC
Confidence            3556677777666666 666788999999999988887644322 222 22222210 00211  0111          0


Q ss_pred             cch----------hhhHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 014600          121 TLK----------VETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVS  190 (422)
Q Consensus       121 ~~~----------~~~~~~~~~~~l~~~~~~~~~~p~~al~~~~t~~~~eR~~l~~~~~~~~~ig~~l~~~~~~~l~~~~  190 (422)
                      +..          |....|.++.=+++..  ....-++....|+++ .+|-.|..+.-+.+++++.++++.+...+....
T Consensus       135 p~~l~~~ili~~~Ws~s~~Yi~aELWgsl--V~S~lFw~faNeitt-~~eakRFy~lf~l~~ni~lllsg~~~~~~~k~~  211 (509)
T COG3202         135 PMFLKWFILIVGEWSYSLFYIMAELWGSL--VLSLLFWQFANEITT-IEEAKRFYPLFGLGANISLLLSGEVTSWLSKHR  211 (509)
T ss_pred             CccceeeeEeecchHHHHHHHHHHHHHHH--HHHHHHHHHHHHhhh-HHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhch
Confidence            100          2222221111122210  222346888899886 577888888888888888877766554443211


Q ss_pred             cCCCCCchHHHHHHHHHHHHHHHHHHHhhhhccccC---ccc---c-----cccCCCcchhhhHHHHHHhHHHHHHHHHH
Q 014600          191 TAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEE---PRL---K-----MGLRGNSHARISWAYWFKKILYYQVALVY  259 (422)
Q Consensus       191 ~~~g~~~~~~~~~~~~~i~~~i~~i~~~i~~~~~~E---~~~---~-----~~~~~~~~~~~~~~~~~~n~~f~~~~~~~  259 (422)
                      ...-........+..+.+.+..++++.++..+.=|+   ++.   +     ++++.+.+..++++.+.|+|....+.+.-
T Consensus       212 ~~~~~~~~~~~~~~~~~vi~~~~~i~~~l~~~~~r~il~~~~f~~~~~~kk~~~k~k~~~~~s~k~i~~SkyL~~ial~v  291 (509)
T COG3202         212 DALASEFKDLLLQILFIVIVILGIIAILLYRYINRNVLTDPLFYLRAKKKKKKKKLKLGLIESFKMILRSKYLGAIALLV  291 (509)
T ss_pred             hhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhHHHhcccccccccCcHHHHHHHHHhhhHHHHHHHHH
Confidence            000000011224444555555555554444332221   111   0     11122345678899999999876655444


Q ss_pred             HHHHHH
Q 014600          260 MLTRLV  265 (422)
Q Consensus       260 ~~~~~~  265 (422)
                      ++.+.+
T Consensus       292 l~Y~v~  297 (509)
T COG3202         292 LAYGVS  297 (509)
T ss_pred             HHHHHH
Confidence            444333

>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]

Probab=87.83  E-value=4.6  Score=42.40  Aligned_cols=137  Identities=12%  Similarity=0.029  Sum_probs=70.6

Q ss_pred             HHHHHHHHHHHh-CCChhHHHHHHHHHHHHhhhhhhhhhhhhc-ccCCchhHHHHHHHHHHHHHHHhhc-CccC------
Q 014600           43 WFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELID-RFGHFKIWHGAGSVLVAVSFSSVFG-GCMP------  113 (422)
Q Consensus        43 ~~~~l~~f~t~~-gls~~~~g~i~~i~~l~~ai~~p~~G~lsD-r~Grrrp~ll~g~i~~~i~~~~lf~-~~~p------  113 (422)
                      +..-+..|+++. +.+...+.-......=.......+.++++| .+||.+. +.++..+..++.+++-. ..+|      
T Consensus        56 ~~~nlv~ylt~~~~~~~~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry~t-I~~~s~i~~~G~~~lt~~a~~~~l~p~~  134 (571)
T KOG1237|consen   56 LVSNLVTYLTLELHASGGGAANNVNAFGGTQFLLPLLGAFLADSFLGRYFT-INIGSLISLLGLFGLTLSAMIPALLPFM  134 (571)
T ss_pred             chhHHHHHHHHHhccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHH-HHHHHHHHHHHHHHHHHHHHhhhcCCcc
Confidence            335577888887 777755554444444444445567888999 5899888 45565655555333211 0111      


Q ss_pred             c---cc---cCCccchhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhccCC--ccchh---hHHHHHHHHHHHHHHHHHH
Q 014600          114 C---RI---LSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLN--STSRV---VLTSCRNAFTMVANLSLYA  181 (422)
Q Consensus       114 ~---~~---~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~al~~~~t~~--~~eR~---~l~~~~~~~~~ig~~l~~~  181 (422)
                      |   ..   .+..+.....+.|.. ..+..++.+..-....+..+|..++  +++|.   ....|.....++|.+++..
T Consensus       135 ~~~~~~~~~c~~~s~~q~~~~~~~-l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a~t  212 (571)
T KOG1237|consen  135 CKFKPGGNVCESPSKLQLAVLYGA-LYLIALGAGGIRPCLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNGGALLAQT  212 (571)
T ss_pred             ccCCCCCCcccCcchHHHHHHHHH-HHHheeccCCCCCcchhhcccccCccCcchhhCcccchhHHHHHHHHHHHHHHH
Confidence            0   00   000111111122221 1123345555566667777777762  33433   3455666666666666543

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=87.48  E-value=15  Score=37.75  Aligned_cols=72  Identities=8%  Similarity=0.039  Sum_probs=51.4

Q ss_pred             HHHHHHHHHHHhhhhhhhhhccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchHHHHHHHHHHHHHHH
Q 014600          134 AIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIG  213 (422)
Q Consensus       134 ~l~~~~~~~~~~p~~al~~~~t~~~~eR~~l~~~~~~~~~ig~~l~~~~~~~l~~~~~~~g~~~~~~~~~~~~~i~~~i~  213 (422)
                      +++++..++.+..+.+.+.+..+|++||+...+-.....++..++...++..++.          +.||.....+.-++.
T Consensus       274 i~y~~~~nlve~~~k~~v~~~~p~~~~~~~f~g~~~~~~gi~tl~~~l~~~~l~~----------~~Gw~~~a~i~Pii~  343 (472)
T TIGR00769       274 IAYGISINLVEVTWKSKLKAQYPSPNEYSAFMGDFSTWTGVVSVTMMLLSGNVIR----------KYGWLTAALITPLVM  343 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HhhHHHHHHHHHHHH
Confidence            3577888999999999999999999999988887766666666555544444443          347777666554444


Q ss_pred             HH
Q 014600          214 CC  215 (422)
Q Consensus       214 ~i  215 (422)
                      ++
T Consensus       344 li  345 (472)
T TIGR00769       344 LL  345 (472)
T ss_pred             HH
Confidence            44

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS)

Probab=85.68  E-value=1.7  Score=40.44  Aligned_cols=97  Identities=11%  Similarity=0.088  Sum_probs=54.8

Q ss_pred             cchhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchHHHHHHHHHHHHHHHHHHHhhhhccccCc--ccccccCC-
Q 014600          159 TSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEP--RLKMGLRG-  235 (422)
Q Consensus       159 ~eR~~l~~~~~~~~~ig~~l~~~~~~~l~~~~~~~g~~~~~~~~~~~~~i~~~i~~i~~~i~~~~~~E~--~~~~~~~~-  235 (422)
                      ++|+.++.+...+-++|.++...   |++-..+ . ....+..|++...+.+++.++-.++..++=+|-  ..++++++ 
T Consensus         2 k~K~~~s~~n~~gf~iG~ii~~i---pF~~~~~-~-~~~~~~~W~~I~si~~lL~~IpLIly~ifGk~fd~~~~~~k~~k   76 (267)
T PF07672_consen    2 KKKSILSQFNPWGFNIGTIIVNI---PFLISSS-V-VIALTNNWQWILSIFILLIFIPLILYIIFGKNFDIYSPKEKQEK   76 (267)
T ss_pred             CccceeeeeccccchhhHHHHHh---hHHhcch-H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCccccccc
Confidence            57888888888888888877653   3332100 0 011245688888777766655544444433331  11111111 


Q ss_pred             ---CcchhhhHHHHHHhHHHHHHHHHHH
Q 014600          236 ---NSHARISWAYWFKKILYYQVALVYM  260 (422)
Q Consensus       236 ---~~~~~~~~~~~~~n~~f~~~~~~~~  260 (422)
                         +.+.++..++.+|+|.-|...+.|-
T Consensus        77 ~~~~~~~~~s~~~~LK~K~tw~w~~~Yg  104 (267)
T PF07672_consen   77 ENSTLSKKPSYKSILKEKETWKWILIYG  104 (267)
T ss_pred             ccccccccchHHHHHccchHHHHHHHHH
Confidence               1224567889999998766555443

>PRK03612 spermidine synthase; Provisional

Probab=84.11  E-value=44  Score=34.74  Aligned_cols=37  Identities=19%  Similarity=0.095  Sum_probs=28.0

Q ss_pred             HHHHHHHh-CCChhHHHHHHHHHHHHhhhhhhhhhhhh
Q 014600           47 LLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELI   83 (422)
Q Consensus        47 l~~f~t~~-gls~~~~g~i~~i~~l~~ai~~p~~G~ls   83 (422)
                      ....+... |-+....+.++++....-+++.-+.|++.
T Consensus        37 ~~r~l~~~~G~s~~~~~~ii~~fl~glalGs~l~~~~~   74 (521)
T PRK03612         37 LGTLASYLLGDSVTQFSTVIGLMLFAMGVGALLSKYLL   74 (521)
T ss_pred             HHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            34445555 88888889999998888888887777765

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]

Probab=83.00  E-value=51  Score=33.66  Aligned_cols=114  Identities=12%  Similarity=0.085  Sum_probs=65.5

Q ss_pred             HHHHHHHHHHHhhhhhhhhhhhhc---ccCCchhHHHHHHHHHHHHHHHhhcCccCcccc--CCccc--hh--hhHHHHH
Q 014600           61 AAAVMLSGQIADGFATIFIGELID---RFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRIL--STSTL--KV--ETISYCV  131 (422)
Q Consensus        61 ~g~i~~i~~l~~ai~~p~~G~lsD---r~Grrrp~ll~g~i~~~i~~~~lf~~~~p~~~~--~~~~~--~~--~~~~~~~  131 (422)
                      .+.-.....+...+.....+.+++   |+||+.. +..+.+...+.+.+... ..|.+..  ++...  .+  .....++
T Consensus       281 ~ai~~~~~g~g~v~~g~~~~~l~~rir~fg~~~~-~~~~~~~~~~~~~li~l-~~p~dap~~~t~~~~~~~~~~~~~~~i  358 (461)
T KOG3098|consen  281 IAIYSIGIGLGEVIGGLDFSILSKRIRGFGRKPT-VLIGIIIHLIGFLLIHL-SFPNDAPLRPTDSPPLLFTPSYYLALI  358 (461)
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHhhhhhhcccCcc-hhHHHHHHHHHHHHHhc-cccccCCCCCCcccccccccchhHHHH
Confidence            344444444444555566677776   4888655 66777777777666554 4563321  11110  00  1112233


Q ss_pred             HHHHHHHHHHHHHhhhhhhhhhccCCccchhhHHHHHHHHHHHHHHH
Q 014600          132 FAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLS  178 (422)
Q Consensus       132 ~~~l~~~~~~~~~~p~~al~~~~t~~~~eR~~l~~~~~~~~~ig~~l  178 (422)
                      ...+++++.++.+.--........  +++|.++.++......+++.+
T Consensus       359 i~~l~G~~D~~~~t~~~~ii~~~~--~~~~~~~fsi~kfyq~~~s~v  403 (461)
T KOG3098|consen  359 IGFLLGFGDACFNTQRYVIIALLY--PDDRAQAFSLFKFYQSVASCV  403 (461)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHHh--cCchHHHHHHHHHHHHHHHHH
Confidence            335688888888887777777765  567777777665555555544

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=81.58  E-value=1.4  Score=44.31  Aligned_cols=100  Identities=11%  Similarity=0.031  Sum_probs=59.5

Q ss_pred             CCChhHHHHHHHHHHHHhhhhhhhhhhhhcccCCchhHHHHHHHHHHHHHHHhhcCccCccccCCccchhhhHHHHHHHH
Q 014600           55 GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVETISYCVFAA  134 (422)
Q Consensus        55 gls~~~~g~i~~i~~l~~ai~~p~~G~lsDr~Grrrp~ll~g~i~~~i~~~~lf~~~~p~~~~~~~~~~~~~~~~~~~~~  134 (422)
                      |-+...+|.+-....+...+...++|.+.||+.+.|.-++.......++...+++ +.   ..+.. .+   +.|.. ..
T Consensus       297 gY~~~~aG~ig~l~iv~Gmlga~~~gii~Dktk~fk~~~~v~~~~~~v~~~~l~~-~t---~~~~~-~v---iv~~t-~~  367 (480)
T KOG2563|consen  297 GYEGVFAGYIGALMIVAGMLGALASGIIADKTKKFKLTTLVLYLFALVGTLMLLT-CT---LFLGD-SV---IVFTT-CG  367 (480)
T ss_pred             cCCccccchhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHH-hh---ccCCc-eE---ehhhh-HH
Confidence            5666777778788888888888999999999988877666555554444222222 10   01111 11   22221 12


Q ss_pred             HHHHHHHHHHhhhhhhhhhccCCccchhh
Q 014600          135 IFNVGWAATQVAHMSMVNCITLNSTSRVV  163 (422)
Q Consensus       135 l~~~~~~~~~~p~~al~~~~t~~~~eR~~  163 (422)
                      +++.+.+....-...+..|.|-+..|++.
T Consensus       368 ~~g~~~~~~~Pig~ElgvE~TyPv~E~tS  396 (480)
T KOG2563|consen  368 LLGFFGTGYLPIGFELGVETTYPVAEGTS  396 (480)
T ss_pred             HHHHhhcCCCCcceeeeeeeccccCCccc
Confidence            45555555544556677777776677764

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	422
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.4 bits (96), Expect = 6e-04
 Identities = 38/249 (15%), Positives = 77/249 (30%), Gaps = 77/249 (30%)

Query: 198 LENQYRWIAYSSI-------------FIGC---------CFVGIFLSRTEE-PRLKMGLR 234
           L   Y+++  S I             +I            F    +SR +   +L+  L 
Sbjct: 87  LRINYKFL-MSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALL 145

Query: 235 GNSHARISWAYWFKKILYYQVALVYML----TRLVVNVSQAY-----LAFYV--INDLRM 283
               A+              V +  +L    T + ++V  +Y     + F +  +N   +
Sbjct: 146 ELRPAKN-------------VLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLN---L 189

Query: 284 GQSAKALVPAIIYICSFIVSILLQVTGISMQNVLVGEDLSGCAFVCGTLSFLDKMSCGIA 343
                         C+   ++L       +Q +L   D +  +    + +   K+     
Sbjct: 190 KN------------CNSPETVLEM-----LQKLLYQIDPNWTSRSDHSSN--IKLRIHSI 230

Query: 344 VYVLQSYQSMSPT-----VLDNNSSITSLTVLDNNS--LISTSYISVTRFGLGLIPAICS 396
              L+      P      VL N  +  +    + +   L++T +  VT F         S
Sbjct: 231 QAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHIS 290

Query: 397 LVSVAVTFT 405
           L   ++T T
Sbjct: 291 LDHHSMTLT 299

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	422
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.89
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	99.87
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	99.79
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.7
2cfq_A	417	Lactose permease; transport, transport mechanism,	99.61
2xut_A	524	Proton/peptide symporter family protein; transport	99.53
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	99.43
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.07
2cfq_A	417	Lactose permease; transport, transport mechanism,	98.82
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	98.73
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	98.62
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	98.58
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	97.76
2xut_A	524	Proton/peptide symporter family protein; transport	97.72

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.89  E-value=1.3e-22  Score=203.02  Aligned_cols=308  Identities=12%  Similarity=0.029  Sum_probs=212.7

Q ss_pred             eeeeeccchhHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHhhhhhhhhhhhhcccCCchhHHHHHHHHHHHHHH
Q 014600           26 VLYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFS  105 (422)
Q Consensus        26 ~~~y~~g~~~~~~~~~~~~~~l~~f~t~~gls~~~~g~i~~i~~l~~ai~~p~~G~lsDr~Grrrp~ll~g~i~~~i~~~  105 (422)
                      ......+.+...........+++.+.++. .++.++|++.++..+..++..|+.|+++||+||||. ++.+.++.+++..
T Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~-l~~~~~~~~~~~~  107 (451)
T 1pw4_A           30 FLGIFFGYAAYYLVRKNFALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVF-LPAGLILAAAVML  107 (451)
T ss_dssp             HHHHHHHHHHHHHHHTSHHHHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHH-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHH-HHHHHHHHHHHHH
Confidence            34445555555555556667788888888 999999999999999999999999999999999886 6677787777766


Q ss_pred             HhhcCccCccccCCccchhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCccchhhHHHHHHHHHHHHHHHHHHHHHH
Q 014600          106 SVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFI  185 (422)
Q Consensus       106 ~lf~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~al~~~~t~~~~eR~~l~~~~~~~~~ig~~l~~~~~~~  185 (422)
                      ++..  .|.. .+  +.+    .+++..++.+++.+....+..++++|+.+ +++|++..++......+|.++++.+++.
T Consensus       108 ~~~~--~~~~-~~--~~~----~l~~~~~l~G~~~~~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~g~~~g~~~~~~  177 (451)
T 1pw4_A          108 FMGF--VPWA-TS--SIA----VMFVLLFLCGWFQGMGWPPCGRTMVHWWS-QKERGGIVSVWNCAHNVGGGIPPLLFLL  177 (451)
T ss_dssp             HHHH--CHHH-HS--SSS----HHHHHHHHHHHHHHHTHHHHHHHHHTTCT-TTHHHHHHHHHHHHHHHHHTSHHHHHHH
T ss_pred             HHHh--hhhc-cc--cHH----HHHHHHHHHHHHhhhccchHHHHHHHHCC-chhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5431  1100 11  122    22333457888888889999999999986 6899999999999999999988877766


Q ss_pred             HHhhccCCCCCchHHH-HHHHHHHHHHHHHHHHhhhhccccCccccccc---CC---------------Ccchhhh-HHH
Q 014600          186 VFSVSTAKTHADLENQ-YRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGL---RG---------------NSHARIS-WAY  245 (422)
Q Consensus       186 l~~~~~~~g~~~~~~~-~~~~~~i~~~i~~i~~~i~~~~~~E~~~~~~~---~~---------------~~~~~~~-~~~  245 (422)
                      +...          .+ |++.+++.+++.++..++.++..||++.+++.   ++               +.+.++. .++
T Consensus       178 l~~~----------~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (451)
T 1pw4_A          178 GMAW----------FNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQELTAKQIFMQY  247 (451)
T ss_dssp             HHHH----------TCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTCCC-------------CCTHHHHHH
T ss_pred             HHHH----------hccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCChhhhcccccccchhhhhcccccccchHHH
Confidence            5543          24 88888877777777666666777775432110   00               1111111 467


Q ss_pred             HHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhccCccchhHhHHH------------HH-------------HHHHHH
Q 014600          246 WFKKILYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVP------------AI-------------IYICSF  300 (422)
Q Consensus       246 ~~~n~~f~~~~~~~~~~~~~~~~~~~y~~~y~~~~~~l~~~~~~~iP------------~~-------------~~~~~~  300 (422)
                      .+|||.++...+..++..........++|.|+.+..+++....+.+-            ..             ....+.
T Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~  327 (451)
T 1pw4_A          248 VLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFF  327 (451)
T ss_dssp             TSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHH
T ss_pred             HHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHH
Confidence            78899988888777777777888899999999988787664321000            00             000111


Q ss_pred             HHHH-HHH-------------------HHH----------hhhhhhhhcCccccccceehhhHHHHHH-HHHHHHHHHHH
Q 014600          301 IVSI-LLQ-------------------VTG----------ISMQNVLVGEDLSGCAFVCGTLSFLDKM-SCGIAVYVLQS  349 (422)
Q Consensus       301 ~~~~-~~~-------------------v~~----------~~~~~~~~g~r~~g~~~~~s~~~~~~K~-~~a~~~~i~g~  349 (422)
                      .+.. ++-                   +.+          ..+..+..++++.|.  .+|..+.+.++ |..+++.+.|.
T Consensus       328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~--~~~~~~~~~~~~g~~~~~~~~g~  405 (451)
T 1pw4_A          328 MTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGT--AAGFTGLFGYLGGSVAASAIVGY  405 (451)
T ss_dssp             HHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHH--HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhh--HHHHHHHHHHHHHHHHHHHHHHH
Confidence            0000 000                   001          122345566777888  99999999999 99999999999


Q ss_pred             hHhhCCCc
Q 014600          350 YQSMSPTV  357 (422)
Q Consensus       350 ~l~~~Gy~  357 (422)
                      +.+..||.
T Consensus       406 l~~~~g~~  413 (451)
T 1pw4_A          406 TVDFFGWD  413 (451)
T ss_dssp             HHHSSCSH
T ss_pred             HHHhcCcH
Confidence            99988864

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=99.87  E-value=4.1e-20  Score=184.19  Aligned_cols=251  Identities=12%  Similarity=-0.021  Sum_probs=173.6

Q ss_pred             eeeeeeccchhHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHhhhhhhhhhhhhcccCCchhHHHHHHHHHHHHH
Q 014600           25 SVLYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSF  104 (422)
Q Consensus        25 ~~~~y~~g~~~~~~~~~~~~~~l~~f~t~~gls~~~~g~i~~i~~l~~ai~~p~~G~lsDr~Grrrp~ll~g~i~~~i~~  104 (422)
                      ..+......+...........+++.+..+.|++..++|++.++..+..++..|+.|+++||+||||. ++.+.++.+++.
T Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~-l~~~~~~~~~~~  105 (438)
T 3o7q_A           27 PFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAG-IITGLFLYALGA  105 (438)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHH-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHH-HHHHHHHHHHHH
Confidence            3344444455556666666667777666669999999999999999999999999999999999988 557778877776


Q ss_pred             HHhhcCccCccccCCccchhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCccchhhHHHHHHHHHHHHHHHHHHHHH
Q 014600          105 SSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAF  184 (422)
Q Consensus       105 ~~lf~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~al~~~~t~~~~eR~~l~~~~~~~~~ig~~l~~~~~~  184 (422)
                      .+.+.  ..  ..+  +.+    .+++.+++.+++.+....+..++++|+.+ +++|++..++.+....+|.++++.++.
T Consensus       106 ~~~~~--~~--~~~--~~~----~l~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~~r~~~~~~~~~~~~~g~~~g~~~~~  174 (438)
T 3o7q_A          106 ALFWP--AA--EIM--NYT----LFLVGLFIIAAGLGCLETAANPFVTVLGP-ESSGHFRLNLAQTFNSFGAIIAVVFGQ  174 (438)
T ss_dssp             HHHHH--HH--HTT--CHH----HHHHHHHHHHHHHHHHHHHHHHHHHHSSC-STTHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHh--cc--ccc--cHH----HHHHHHHHHHhhHHHhhhhHHHHHHHHcC-chhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            65421  00  111  122    22333457889999999999999999986 689999999999999999999888876


Q ss_pred             HHH-hhccCCCC---------------CchHHHHHHHHHHHHHHHHHHHhhhhc-cccCccccc-ccCCCcchhhhHHHH
Q 014600          185 IVF-SVSTAKTH---------------ADLENQYRWIAYSSIFIGCCFVGIFLS-RTEEPRLKM-GLRGNSHARISWAYW  246 (422)
Q Consensus       185 ~l~-~~~~~~g~---------------~~~~~~~~~~~~i~~~i~~i~~~i~~~-~~~E~~~~~-~~~~~~~~~~~~~~~  246 (422)
                      .+. ...+..+.               .+...+|++.+.+.+.+.++..++.++ ..||++.++ +++++.+.++.++++
T Consensus       175 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~  254 (438)
T 3o7q_A          175 SLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDNHSDAKQGSFSASLSRL  254 (438)
T ss_dssp             HHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTTCCCCSSTTSHHHHHHHH
T ss_pred             HHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCcccccccccccccchhhhHHHH
Confidence            666 22110000               001123888887666655554444333 234433222 222334556778899


Q ss_pred             HHhHHHHHHHHHHHHHHHHHHhhhHHHHHH-hhhccCccchh
Q 014600          247 FKKILYYQVALVYMLTRLVVNVSQAYLAFY-VINDLRMGQSA  287 (422)
Q Consensus       247 ~~n~~f~~~~~~~~~~~~~~~~~~~y~~~y-~~~~~~l~~~~  287 (422)
                      +|||.++...+..++..........|.+.| ..+..+.+...
T Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  296 (438)
T 3o7q_A          255 ARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGF  296 (438)
T ss_dssp             TTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHH
T ss_pred             HhChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhH
Confidence            999999887777777777777888999999 77776776543

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=99.79  E-value=6.5e-19  Score=172.19  Aligned_cols=228  Identities=13%  Similarity=0.046  Sum_probs=169.3

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHhhhhhhhhhhhhcccCCchhHHHHHHHHHHHHHHHhhcCc
Q 014600           32 GHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGC  111 (422)
Q Consensus        32 g~~~~~~~~~~~~~~l~~f~t~~gls~~~~g~i~~i~~l~~ai~~p~~G~lsDr~Grrrp~ll~g~i~~~i~~~~lf~~~  111 (422)
                      ..+..........+.++.+.++.|.++.++|++.++..+...+..|+.|+++||+||||. ++.+....+++..++..  
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~-~~~~~~~~~~~~~~~~~--   84 (375)
T 2gfp_A            8 LVAVGQMAQTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPV-ILVGMSIFMLATLVAVT--   84 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCC-CHHHHHHHHHHHHHHHH--
T ss_pred             HHHHHHHHHHHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchh-HHHHHHHHHHHHHHHHH--
Confidence            334455555666667776665569999999999999999999999999999999999988 45677777777655431  


Q ss_pred             cCccccCCccchhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 014600          112 MPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVST  191 (422)
Q Consensus       112 ~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~al~~~~t~~~~eR~~l~~~~~~~~~ig~~l~~~~~~~l~~~~~  191 (422)
                           .+  +.    ..+.+...+.+++.+.......++..|+.+ ++||++..+..+....+|..+++.+++.+.+   
T Consensus        85 -----~~--~~----~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~---  149 (375)
T 2gfp_A           85 -----TS--SL----TVLIAASAMQGMGTGVGGVMARTLPRDLYE-RTQLRHANSLLNMGILVSPLLAPLIGGLLDT---  149 (375)
T ss_dssp             -----HH--HH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TSSCCSHHHHHHHHHHHHHHHHHHHHHHSSC---
T ss_pred             -----hc--cH----HHHHHHHHHHHHHHHhhhhhHHHHHHHHCC-HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH---
Confidence                 11  11    122333457888888888899999999986 5789999999999999888887766544321   


Q ss_pred             CCCCCchHHHHHHHHHHHHHHHHHHHhhhhccccCcccccccCCCcchhhhHHHHHHhHHHHHHHHHHHHHHHHHHhhhH
Q 014600          192 AKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISWAYWFKKILYYQVALVYMLTRLVVNVSQA  271 (422)
Q Consensus       192 ~~g~~~~~~~~~~~~~i~~~i~~i~~~i~~~~~~E~~~~~~~~~~~~~~~~~~~~~~n~~f~~~~~~~~~~~~~~~~~~~  271 (422)
                             ..+|++.+.+.+++.++..++..+..||++.+++  ++++.++.+++++|||+++...+..++..........
T Consensus       150 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  220 (375)
T 2gfp_A          150 -------MWNWRACYLFLLVLCAGVTFSMARWMPETRPVDA--PRTRLLTSYKTLFGNSGFNCYLLMLIGGLAGIAAFEA  220 (375)
T ss_dssp             -------HHHHHHHHHHHHHHHHHHHCCCCCSSCCCSTTTC--CCCCTTTCSTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -------hccHHHHHHHHHHHHHHHHHHHHHHCcccCCCCc--ccccHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHH
Confidence                   3589998888888777777666777788654322  2223455667889999988877777777777778888


Q ss_pred             HHHHHhhhccCccch
Q 014600          272 YLAFYVINDLRMGQS  286 (422)
Q Consensus       272 y~~~y~~~~~~l~~~  286 (422)
                      +.|.|..+..+.+..
T Consensus       221 ~~~~~~~~~~g~~~~  235 (375)
T 2gfp_A          221 CSGVLMGAVLGLSSM  235 (375)
T ss_dssp             HCSCSSHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCHH
Confidence            999998886666554

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.70  E-value=8.5e-15  Score=148.11  Aligned_cols=172  Identities=11%  Similarity=-0.085  Sum_probs=125.2

Q ss_pred             eeeeccchhHHHHHHHHHHHHHHHHHH------hCCChhHHHHHHHHHHHHhhhhhhhhhhhhcc-cCCchhHHHHHHHH
Q 014600           27 LYYGSGHMLNDITAACWFTYLLLFLTD------IGLSPRGAAAVMLSGQIADGFATIFIGELIDR-FGHFKIWHGAGSVL   99 (422)
Q Consensus        27 ~~y~~g~~~~~~~~~~~~~~l~~f~t~------~gls~~~~g~i~~i~~l~~ai~~p~~G~lsDr-~Grrrp~ll~g~i~   99 (422)
                      +......+.....+....++++.|+++      .|++..++|++.++..+..++..|+.|+++|| +||||. +..+.+.
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~-~~~~~~~   94 (491)
T 4aps_A           16 STLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPA-VFWGGVL   94 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHH-HHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHH-HHHHHHH
Confidence            334445566666666777888888876      59999999999999999999999999999999 899988 5567777


Q ss_pred             HHHHHHHhhcCccCccccCCccchhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCccc--hhhHHHHHHHHHHHHHH
Q 014600          100 VAVSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTS--RVVLTSCRNAFTMVANL  177 (422)
Q Consensus       100 ~~i~~~~lf~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~al~~~~t~~~~e--R~~l~~~~~~~~~ig~~  177 (422)
                      .+++..++..       ++  +.+    .+.+..++.+++.+....+..++++|+.+ +++  |++..+..+...++|..
T Consensus        95 ~~~~~~~~~~-------~~--~~~----~~~~~~~l~g~~~~~~~~~~~~~~~~~~~-~~~~~r~~~~~~~~~~~~~g~~  160 (491)
T 4aps_A           95 IMLGHIVLAL-------PF--GAS----ALFGSIILIIIGTGFLKPNVSTLVGTLYD-EHDRRRDAGFSIFVFGINLGAF  160 (491)
T ss_dssp             HHHHHHHHHS-------CC--STT----HHHHHHHHHHHHHHHHHHHHHHHHHHHSS-SCTTHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHH-------hh--hHH----HHHHHHHHHHHHHHhccchHHHHHHHHcC-cccccceeeehHHHHHHHHHHH
Confidence            7777655432       11  122    12223356788888888899999999987 456  66677777788888888


Q ss_pred             HHHHHHHHHHhhccCCCCCchHHHHHHHHHHHHHHHHHHHhhhhcc
Q 014600          178 SLYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSR  223 (422)
Q Consensus       178 l~~~~~~~l~~~~~~~g~~~~~~~~~~~~~i~~~i~~i~~~i~~~~  223 (422)
                      +++.+++.+.+          ..+|++.+.+.++..+++.++.++.
T Consensus       161 ~~~~~~~~l~~----------~~g~~~~f~~~~~~~~~~~~~~~~~  196 (491)
T 4aps_A          161 IAPLIVGAAQE----------AAGYHVAFSLAAIGMFIGLLVYYFG  196 (491)
T ss_dssp             HHHHHHHHHHH----------HSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHh----------hhhHHHHHHHHHHHHHHHHHHHHHh
Confidence            88777665543          2378888877766555554444433

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=99.61  E-value=3.8e-16  Score=155.43  Aligned_cols=75  Identities=15%  Similarity=0.188  Sum_probs=58.3

Q ss_pred             eeeeeeccchhHHHHHHHHHHHHHHHHHHh-CCChhHHHHHHHHHHHHhhhhhhhhhhhhcccCCchhHHHHHHHHH
Q 014600           25 SVLYYGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLV  100 (422)
Q Consensus        25 ~~~~y~~g~~~~~~~~~~~~~~l~~f~t~~-gls~~~~g~i~~i~~l~~ai~~p~~G~lsDr~Grrrp~ll~g~i~~  100 (422)
                      +........+.....+....++++.|+++. |+++.++|.+.++..+...+..|+.|+++||+||||+++ .+....
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~-~~~~~~   83 (417)
T 2cfq_A            8 NFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLL-WIITGM   83 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHH-HHHHHT
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHH-HHHHHH
Confidence            333344444444455556667899999986 999999999999999999999999999999999999965 444433

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=99.53  E-value=3.1e-13  Score=137.81  Aligned_cols=172  Identities=12%  Similarity=-0.018  Sum_probs=123.2

Q ss_pred             eeeeccchhHHHHHHHHHHHHHHHHHHh-C------CChhHHHHHHHHHHHHhhhhhhhhhhhhccc-CCchhHHHHHHH
Q 014600           27 LYYGSGHMLNDITAACWFTYLLLFLTDI-G------LSPRGAAAVMLSGQIADGFATIFIGELIDRF-GHFKIWHGAGSV   98 (422)
Q Consensus        27 ~~y~~g~~~~~~~~~~~~~~l~~f~t~~-g------ls~~~~g~i~~i~~l~~ai~~p~~G~lsDr~-Grrrp~ll~g~i   98 (422)
                      +......+.....+....++++.|+++. |      +++.++|++.++..+...+..|+.|+++||+ ||||. +..+.+
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~-~~~~~~   93 (524)
T 2xut_A           15 PYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNT-ILWLSL   93 (524)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHH-HHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHH-HHHHHH
Confidence            3445556666777777778899999886 9      9999999999999999999999999999999 99988 456777


Q ss_pred             HHHHHHHHhhcCccCccccCCccchhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCccchhhHHHH---HHHHHHHH
Q 014600           99 LVAVSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSC---RNAFTMVA  175 (422)
Q Consensus        99 ~~~i~~~~lf~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~al~~~~t~~~~eR~~l~~~---~~~~~~ig  175 (422)
                      ..+++..++..       .+ .+.+    .+.+..++.+++.+....+..++++|..+ +++|++..+.   .+...++|
T Consensus        94 ~~~~~~~~~~~-------~~-~~~~----~~~~~~~l~g~~~~~~~~~~~~~~~~~~~-~~~r~~~~~~~~~~~~~~~~g  160 (524)
T 2xut_A           94 IYCVGHAFLAI-------FE-HSVQ----GFYTGLFLIALGSGGIKPLVSSFMGDQFD-QSNKSLAQKAFDMFYFTINFG  160 (524)
T ss_dssp             HHHHHHHHHHH-------TS-SCHH----HHHHHHHHHHHHHHTTHHHHHHHHHHTCS-TTTTTHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHH-------hc-ccHH----HHHHHHHHHHHhccccchhHHHHHHHHcC-ccchHHHHHHHHHHHHHHHHH
Confidence            77776655432       11 0122    12223456788888888999999999987 5677655544   77777888


Q ss_pred             HHHHHHHHHHHHhhccCCCCCchHHHHHHHHHHHHHHHHHHHhhhhc
Q 014600          176 NLSLYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLS  222 (422)
Q Consensus       176 ~~l~~~~~~~l~~~~~~~g~~~~~~~~~~~~~i~~~i~~i~~~i~~~  222 (422)
                      ..+++.+.+.+.+          ..+|++.+.+.+++.++..++.++
T Consensus       161 ~~~g~~~~~~l~~----------~~g~~~~f~~~~~~~~~~~~~~~~  197 (524)
T 2xut_A          161 SFFASLSMPLLLK----------NFGAAVAFGIPGVLMFVATVFFWL  197 (524)
T ss_dssp             HHHHHHTSTHHHH----------TSCHHHHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHhc----------cccHHHHHHHHHHHHHHHHHHHHH
Confidence            7777655544432          236888887776666655444433

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=99.43  E-value=1.1e-11  Score=124.94  Aligned_cols=164  Identities=15%  Similarity=0.090  Sum_probs=107.9

Q ss_pred             hhHHHHHHHHHHHHhhhhhhhhhhhhcccCCchhHHHHHHHHHHHHHHHhhcCccCccccC-----C--ccchhhhHHHH
Q 014600           58 PRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILS-----T--STLKVETISYC  130 (422)
Q Consensus        58 ~~~~g~i~~i~~l~~ai~~p~~G~lsDr~Grrrp~ll~g~i~~~i~~~~lf~~~~p~~~~~-----~--~~~~~~~~~~~  130 (422)
                      ....|++.++..+..+++.++.|+++||+|||+. ++++.++..++.++.-.  .+.....     .  .........++
T Consensus        54 ~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~-l~~~~~l~~i~~i~~a~--~~~~~~~~~~~~~~~~~~a~~~~~l~  130 (491)
T 4gc0_A           54 NSLLGFCVASALIGCIIGGALGGYCSNRFGRRDS-LKIAAVLFFISGVGSAW--PELGFTSINPDNTVPVYLAGYVPEFV  130 (491)
T ss_dssp             HHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHH-HHHHHHHHHHHHHHHHC--TTTTTSCSSSSSSCCGGGGGCHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHHHHHH--HhhhhhhhcchhHHHHHHhhhHHHHH
Confidence            4577888888888899999999999999999988 45677777776554321  1100000     0  00011122344


Q ss_pred             HHHHHHHHHHHHHHhhhhhhhhhccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchHHHHHHHHHHHH
Q 014600          131 VFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYRWIAYSSI  210 (422)
Q Consensus       131 ~~~~l~~~~~~~~~~p~~al~~~~t~~~~eR~~l~~~~~~~~~ig~~l~~~~~~~l~~~~~~~g~~~~~~~~~~~~~i~~  210 (422)
                      +.+++.+++.+.......+++.|..+ +++|++..+....+..+|.+++..++..........  ......|++...+..
T Consensus       131 ~~R~l~G~g~G~~~~~~~~~i~E~~p-~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~  207 (491)
T 4gc0_A          131 IYRIIGGIGVGLASMLSPMYIAELAP-AHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDAS--WLNTDGWRYMFASEC  207 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTSC-GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTT--TTTTTHHHHHHHTTH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhCC-HHhhhhhHHhhhhhhhhhhhhhhhcchhhccccccc--cccchhhHHHhhhhh
Confidence            55568888888888888999999986 789999999999888888888776665444322110  112346777766655


Q ss_pred             HHHHHHHhhhhccccCcc
Q 014600          211 FIGCCFVGIFLSRTEEPR  228 (422)
Q Consensus       211 ~i~~i~~~i~~~~~~E~~  228 (422)
                      +..++. ++..+..+|.+
T Consensus       208 ~~~~~~-~~~~~~~peSp  224 (491)
T 4gc0_A          208 IPALLF-LMLLYTVPESP  224 (491)
T ss_dssp             HHHHHH-HHHGGGSCCCH
T ss_pred             hhhhhh-hhhhhcCCCCh
Confidence            555443 34455667754

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.07  E-value=9e-10  Score=109.38  Aligned_cols=175  Identities=7%  Similarity=-0.051  Sum_probs=120.7

Q ss_pred             eeeeeccchhHHHHHHHHHHHHHHHHHHh-CCChhHHHHHHHHHHHHhhhhhhhhhhhhccc--CCchhHHHHHHHHHH-
Q 014600           26 VLYYGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRF--GHFKIWHGAGSVLVA-  101 (422)
Q Consensus        26 ~~~y~~g~~~~~~~~~~~~~~l~~f~t~~-gls~~~~g~i~~i~~l~~ai~~p~~G~lsDr~--Grrrp~ll~g~i~~~-  101 (422)
                      .+...+..+...........+++.|+++. |.++.++|.+..+..+...+..++.|+++||+  |||+..+ .+..... 
T Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~-~~~~~~~~  332 (451)
T 1pw4_A          254 LWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATG-VFFMTLVT  332 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHH-HHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHH-HHHHHHHH
Confidence            34444555556666666778999999996 99999999999999999999999999999999  8887754 4444444 


Q ss_pred             HHHHHhhcCccCccccCCccchhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCccchhhHHHHHHHHHHH-HHHHHH
Q 014600          102 VSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMV-ANLSLY  180 (422)
Q Consensus       102 i~~~~lf~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~al~~~~t~~~~eR~~l~~~~~~~~~i-g~~l~~  180 (422)
                      ++..++..       .++.+.+ .   ..+...+.+.+.+....+..++..|..+ +++|++..+..+....+ |..+++
T Consensus       333 ~~~~~~~~-------~~~~~~~-~---~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~g~~~~~  400 (451)
T 1pw4_A          333 IATIVYWM-------NPAGNPT-V---DMICMIVIGFLIYGPVMLIGLHALELAP-KKAAGTAAGFTGLFGYLGGSVAAS  400 (451)
T ss_dssp             HHHHHTTS-------CCTTCHH-H---HHHHHHHHHHHHTHHHHHHHHHHHHTSC-TTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHH-------hcccCHH-H---HHHHHHHHHHHHhchHHHHHHHHHHHhc-hhhhhhHHHHHHHHHHHHHHHHHH
Confidence            55444331       1111222 1   1122235666666777777888999876 57899999999999998 988888


Q ss_pred             HHHHHHHhhccCCCCCchHHHHHHHHHHHHHHHHHHHhhhhcc
Q 014600          181 AIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSR  223 (422)
Q Consensus       181 ~~~~~l~~~~~~~g~~~~~~~~~~~~~i~~~i~~i~~~i~~~~  223 (422)
                      .+.+.+.+..          +|...+.+.+++.+++.++.++.
T Consensus       401 ~~~g~l~~~~----------g~~~~~~~~~~~~~~~~~~~~~~  433 (451)
T 1pw4_A          401 AIVGYTVDFF----------GWDGGFMVMIGGSILAVILLIVV  433 (451)
T ss_dssp             HHHHHHHHSS----------CSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhc----------CcHHHHHHHHHHHHHHHHHHHHH
Confidence            7776666532          45555665555555555444443

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=98.82  E-value=3.3e-08  Score=97.80  Aligned_cols=162  Identities=11%  Similarity=0.050  Sum_probs=104.0

Q ss_pred             HHHHHHHHHHHHh-C---CChhHHHHHHHHHHHHhhhhhhhhhhhhcccCCchhHHHHHHHHHHHHHHHhhcCccCcccc
Q 014600           42 CWFTYLLLFLTDI-G---LSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRIL  117 (422)
Q Consensus        42 ~~~~~l~~f~t~~-g---ls~~~~g~i~~i~~l~~ai~~p~~G~lsDr~Grrrp~ll~g~i~~~i~~~~lf~~~~p~~~~  117 (422)
                      .....++.|+++. +   .+....|.+..+..+...+..++.|+++||+||||. +..+....++.+.++..       .
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~-l~~~~~~~~~~~~~~~~-------~  309 (417)
T 2cfq_A          238 VFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNA-LLLAGTIMSVRIIGSSF-------A  309 (417)
T ss_dssp             HHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHH-HHHHHHHHHHHHHHHTT-------C
T ss_pred             HHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHH-HHHHHHHHHHHHHHHHH-------h
Confidence            3334567777775 4   335567888888888888899999999999999887 44566666665433221       1


Q ss_pred             CCccchhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCccchhhHHHHH-HHHHHHHHHHHHHHHHHHHhhccCCCCC
Q 014600          118 STSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCR-NAFTMVANLSLYAIAFIVFSVSTAKTHA  196 (422)
Q Consensus       118 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~al~~~~t~~~~eR~~l~~~~-~~~~~ig~~l~~~~~~~l~~~~~~~g~~  196 (422)
                      +  +.+ .   ..+...+.+.++.....+..++.+|..+ ++.|++..+.. +....+|+.+++.+.+.+.+.       
T Consensus       310 ~--~~~-~---~~~~~~l~~~~~~~~~~~~~~~~~~~~p-~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~-------  375 (417)
T 2cfq_A          310 T--SAL-E---VVILKTLHMFEVPFLLVGCFKYITSQFE-VRFSATIYLVCFCFFKQLAMIFMSVLAGNMYES-------  375 (417)
T ss_dssp             C--SHH-H---HHHHTTHHHHHHHHHHHHHHHHHHHHSC-HHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHH-------
T ss_pred             c--cHH-H---HHHHHHHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHh-------
Confidence            1  111 1   1111123455556666667788899876 57788877763 556667777777666555432       


Q ss_pred             chHHHHHHHHHHHHHHHHHHHhhhhccccCcc
Q 014600          197 DLENQYRWIAYSSIFIGCCFVGIFLSRTEEPR  228 (422)
Q Consensus       197 ~~~~~~~~~~~i~~~i~~i~~~i~~~~~~E~~  228 (422)
                         .++...+.+.++++++..++.++..||++
T Consensus       376 ---~g~~~~f~~~~~~~l~~~~~~~~~~~~~~  404 (417)
T 2cfq_A          376 ---IGFQGAYLVLGLVALGFTLISVFTLSGPG  404 (417)
T ss_dssp             ---SHHHHHHHHHHHHHHHHHHHHTTSSCCSC
T ss_pred             ---cCcHHHHHHHHHHHHHHHHHHHhhhcCCC
Confidence               25666666666777776666666667654

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=98.73  E-value=8.3e-08  Score=94.79  Aligned_cols=145  Identities=12%  Similarity=-0.001  Sum_probs=98.9

Q ss_pred             eeeeccchhHHHHHHHHHHHHHHH-HHHh-CCChhHHHHHHHHHHHHhhhhhhhhhhhhcccCCchhHHHHHHHHHHHHH
Q 014600           27 LYYGSGHMLNDITAACWFTYLLLF-LTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSF  104 (422)
Q Consensus        27 ~~y~~g~~~~~~~~~~~~~~l~~f-~t~~-gls~~~~g~i~~i~~l~~ai~~p~~G~lsDr~Grrrp~ll~g~i~~~i~~  104 (422)
                      .......+...........+++.| .++. |.++.++|.+..+..+...+..++.|+++||+||||.. ..+.+..+++.
T Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~-~~~~~~~~~~~  339 (438)
T 3o7q_A          261 RWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVL-AAYALIAMALC  339 (438)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHH-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHH-HHHHHHHHHHH
Confidence            333444445555556667889999 8888 99999999999999999999999999999999998874 45666666665


Q ss_pred             HHhhcCccCccccCCccchhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCccchhhHHHHHHHHHHHHHHHHHHHHH
Q 014600          105 SSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAF  184 (422)
Q Consensus       105 ~~lf~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~al~~~~t~~~~eR~~l~~~~~~~~~ig~~l~~~~~~  184 (422)
                      .++..       .+  +.. ....    ..+.+++++.......++..|..+  ++|+...++.. ...+|+.+++.+.+
T Consensus       340 ~~~~~-------~~--~~~-~~~~----~~~~g~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~-~~~~g~~~~~~~~g  402 (438)
T 3o7q_A          340 LISAF-------AG--GHV-GLIA----LTLCSAFMSIQYPTIFSLGIKNLG--QDTKYGSSFIV-MTIIGGGIVTPVMG  402 (438)
T ss_dssp             HHHHH-------CC--HHH-HHHH----HHHHHHHHTTHHHHHHHHHHSSCG--GGHHHHHHHHH-HTTHHHHHHHHHHH
T ss_pred             HHHHH-------cC--CcH-HHHH----HHHHHHHHHHHHHHHHHHHHhhcc--ccccchhhHHH-HHHHHHHHHHHHHH
Confidence            44332       11  111 1111    135666777666677777777665  34777777665 55677777776666


Q ss_pred             HHHhh
Q 014600          185 IVFSV  189 (422)
Q Consensus       185 ~l~~~  189 (422)
                      .+.+.
T Consensus       403 ~l~~~  407 (438)
T 3o7q_A          403 FVSDA  407 (438)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            65543

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=98.62  E-value=2.5e-07  Score=92.95  Aligned_cols=170  Identities=12%  Similarity=-0.002  Sum_probs=105.2

Q ss_pred             HHHHHHHHHHhCCChhHHHHHHHHHHHHhhhhhhhhhhhhcccCCchhHHHHHHHHHHHHHHHhhcCccCccccCCccch
Q 014600           44 FTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLK  123 (422)
Q Consensus        44 ~~~l~~f~t~~gls~~~~g~i~~i~~l~~ai~~p~~G~lsDr~Grrrp~ll~g~i~~~i~~~~lf~~~~p~~~~~~~~~~  123 (422)
                      ..|.+.+..+.+.+.........+..+...+..++.++++||+|||+.. +.+....+++...+...  .   .... ..
T Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~-~~~~~~~~~~~~~l~~~--~---~~~~-~~  369 (491)
T 4gc0_A          297 LYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQ-IIGALGMAIGMFSLGTA--F---YTQA-PG  369 (491)
T ss_dssp             HHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHH-HHHHHHHHHHHHHHHHH--H---HTTC-CH
T ss_pred             HhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchh-ccchHHHHHHHHHHHHH--H---hccc-ch
Confidence            3444445555588888777777888888889999999999999999884 45666666554433210  0   0111 11


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHh-hhhhhhhhccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchHHHH
Q 014600          124 VETISYCVFAAIFNVGWAATQV-AHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQY  202 (422)
Q Consensus       124 ~~~~~~~~~~~l~~~~~~~~~~-p~~al~~~~t~~~~eR~~l~~~~~~~~~ig~~l~~~~~~~l~~~~~~~g~~~~~~~~  202 (422)
                      +..+..   ..++..+++.... ..+.+.+|+.+ .+.|++..++....+.+++.+++.+.+.+.....    .....++
T Consensus       370 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~E~fP-t~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~----~~~~~~~  441 (491)
T 4gc0_A          370 IVALLS---MLFYVAAFAMSWGPVCWVLLSEIFP-NAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSW----LVAHFHN  441 (491)
T ss_dssp             HHHHHH---HHHHHHHHHTTTTHHHHHHHHHSSC-TTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHH----HHHHHTT
T ss_pred             HHHHHH---HHHHHHHHHhHHHHHHHHHHHHhCC-HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHhhhhh
Confidence            111111   1123333332222 23567889987 5789999999988888888887766533322110    0011233


Q ss_pred             HHHHHHHHHHHHHHHhhhhccccCcc
Q 014600          203 RWIAYSSIFIGCCFVGIFLSRTEEPR  228 (422)
Q Consensus       203 ~~~~~i~~~i~~i~~~i~~~~~~E~~  228 (422)
                      .+.+++++.+++++.++.++++||.+
T Consensus       442 ~~~~~i~~~~~~~~~i~~~~~~PETk  467 (491)
T 4gc0_A          442 GFSYWIYGCMGVLAALFMWKFVPETK  467 (491)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHCCCCT
T ss_pred             hHHHHHHHHHHHHHHHHHHheecCCC
Confidence            44567778888888888889999975

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=98.58  E-value=4.2e-08  Score=98.70  Aligned_cols=169  Identities=8%  Similarity=-0.147  Sum_probs=101.9

Q ss_pred             HHHHHHHHHHHHHh-CCChhHHHHHHHHHHHHhhhhhhhhhhhhcccCCchhHHH----HHHHHHHHHHHHhhcCccCcc
Q 014600           41 ACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHG----AGSVLVAVSFSSVFGGCMPCR  115 (422)
Q Consensus        41 ~~~~~~l~~f~t~~-gls~~~~g~i~~i~~l~~ai~~p~~G~lsDr~Grrrp~ll----~g~i~~~i~~~~lf~~~~p~~  115 (422)
                      .....+++.|+.+. +.+....+.+..+..+...+..|+.|+++||+|||++...    .+....++++.++..  .+..
T Consensus       300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~--~~~~  377 (491)
T 4aps_A          300 EQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAI--PGAL  377 (491)
T ss_dssp             GGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHH--HHHH
T ss_pred             hhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHH--HHHh
Confidence            33445778888887 8777777888888888888899999999999999876431    455555555433221  0000


Q ss_pred             c--cCCccchhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Q 014600          116 I--LSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAK  193 (422)
Q Consensus       116 ~--~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~al~~~~t~~~~eR~~l~~~~~~~~~ig~~l~~~~~~~l~~~~~~~  193 (422)
                      .  .+..+.++.    .+..++.+++.+....+..++..|..+ +++|++..++.+....+|..+++.+.+.+.+     
T Consensus       378 ~~~~~~~~~~~~----~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~-----  447 (491)
T 4aps_A          378 YGTSGKVSPLWL----VGSWALVILGEMLISPVGLSVTTKLAP-KAFNSQMMSMWFLSSSVGSALNAQLVTLYNA-----  447 (491)
T ss_dssp             CCCCTTCCTHHH----HHHHHHHHHHHHTTTTHHHHHHHHHTT-TTCSSSSTHHHHHHHHHHHHHHHHHGGGGGG-----
T ss_pred             cCCCCCccHHHH----HHHHHHHHHHHHHHhHHHHHHHHHhCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----
Confidence            0  001122211    122235677777777778889999876 5789999999888888888887765432211     


Q ss_pred             CCCchHHHHHHHHHHHHHHHHHHHhhhhccccCc
Q 014600          194 THADLENQYRWIAYSSIFIGCCFVGIFLSRTEEP  227 (422)
Q Consensus       194 g~~~~~~~~~~~~~i~~~i~~i~~~i~~~~~~E~  227 (422)
                            .++.+.+.+.+.+.+++.++.++..|+.
T Consensus       448 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~  475 (491)
T 4aps_A          448 ------KSEVAYFSYFGLGSVVLGIVLVFLSKRI  475 (491)
T ss_dssp             ------SSTTHHHHHTHHHHHHHHHHHHHC----
T ss_pred             ------ccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                  1233344445555555555555554543

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=97.76  E-value=2.3e-06  Score=82.70  Aligned_cols=141  Identities=13%  Similarity=-0.007  Sum_probs=91.8

Q ss_pred             eeccchhHHHHHHHHHHHHHHHHHHh-CCChhHHHHHHHHHHHHhhhhhhhhhhhhcccCCchhHHHHHHHH-HHHHHHH
Q 014600           29 YGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVL-VAVSFSS  106 (422)
Q Consensus        29 y~~g~~~~~~~~~~~~~~l~~f~t~~-gls~~~~g~i~~i~~l~~ai~~p~~G~lsDr~Grrrp~ll~g~i~-~~i~~~~  106 (422)
                      .....+...........+++.|+++. |.++.++|.+..+..+...+..++.|++.||+|| +  +..+... ...+..+
T Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~-~--~~~~~~~~~~~~~~~  280 (375)
T 2gfp_A          204 YLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFST-L--MWQSVICCLLAGLLM  280 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHH-H--HHHHHHHHHHTSSSS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H--HHHHHHHHHHHHHHH
Confidence            33444445555556667788888886 9999999999999999999999999999999887 2  2233322 1111110


Q ss_pred             hhcCccCccccCCccchhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCccchhhHHHHHHHHHHHHHHHHHHHH
Q 014600          107 VFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIA  183 (422)
Q Consensus       107 lf~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~al~~~~t~~~~eR~~l~~~~~~~~~ig~~l~~~~~  183 (422)
                      +..   +  ..+..+ .   ....+...+.+++++....+..++..|..+  ++|++..+..+....+|..+++.+.
T Consensus       281 ~~~---~--~~~~~~-~---~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p--~~~g~~~g~~~~~~~~g~~~~~~~~  346 (375)
T 2gfp_A          281 WIP---D--WFGVMN-V---WTLLVPAALFFFGAGMLFPLATSGAMEPFP--FLAGTAGALVGGLQNIGSGVLASLS  346 (375)
T ss_dssp             SHH---H--HHHHHH-H---HHHHHHHHHHHHHHHHTSSTTHHHHHTHHH--HHHHHHHHHHHHHHHHHHHCCSTTC
T ss_pred             HHH---h--hhcccc-H---HHHHHHHHHHHHHHHHhhHHHHHHHHHhCC--cccchHHHHHHHHHHHHHHHHHHHH
Confidence            000   0  000001 1   112222346778888888888899998874  6899999998888877776655433

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=97.72  E-value=7.1e-05  Score=75.62  Aligned_cols=121  Identities=14%  Similarity=0.061  Sum_probs=71.1

Q ss_pred             HHHHHHHHHHHHhhhhhhhhhhhh----cccCCc---hhHHHHHHHHHHHHHHHhhcCccCcccc--CCccchhhhHHHH
Q 014600           60 GAAAVMLSGQIADGFATIFIGELI----DRFGHF---KIWHGAGSVLVAVSFSSVFGGCMPCRIL--STSTLKVETISYC  130 (422)
Q Consensus        60 ~~g~i~~i~~l~~ai~~p~~G~ls----Dr~Grr---rp~ll~g~i~~~i~~~~lf~~~~p~~~~--~~~~~~~~~~~~~  130 (422)
                      ..+.+..+..+...+..|+.|++.    ||.|||   +..+..+.++.++++.++..  .+....  ...+.++.    .
T Consensus       336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~----~  409 (524)
T 2xut_A          336 EPAMMQALNPLLVMLLIPFNNFVLYPAIERMGVKLTALRKMGAGIAITGLSWIVVGT--IQLMMDGGSALSIFWQ----I  409 (524)
T ss_dssp             CHHHHHTTSGGGHHHHGGGTTTC------------CCHHHHHTHHHHHHHHHHTTTT--TTTTTTTTCCCCSHHH----H
T ss_pred             cHHHHHHHHHHHHHHhHHHHHhhhHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHH--HHHHhcCCCCcCHHHH----H
Confidence            355555555556666778888875    555543   22345566666666544321  110000  01122222    1


Q ss_pred             HHHHHHHHHHHHHHhhhhhhhhhccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 014600          131 VFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVF  187 (422)
Q Consensus       131 ~~~~l~~~~~~~~~~p~~al~~~~t~~~~eR~~l~~~~~~~~~ig~~l~~~~~~~l~  187 (422)
                      +..++.+++......+..++..|..+ +++|++..++.+....+|+.+++.+.+.+.
T Consensus       410 ~~~~l~g~~~~~~~~~~~~~~~~~~p-~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~  465 (524)
T 2xut_A          410 LPYALLTFGEVLVSATGLEFAYSQAP-KAMKGTIMSFWTLSVTVGNLWVLLANVSVK  465 (524)
T ss_dssp             HHHHHHHHHHHHHHHHHTTTHHHHCC-TTCCTTTHHHHGGGHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCc-HHHHhHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            22246778888888888999999886 678999999999999999988877665443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	422
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	99.87
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.73
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	98.8
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	98.72

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.87  E-value=1.4e-21  Score=192.09  Aligned_cols=223  Identities=14%  Similarity=0.080  Sum_probs=155.2

Q ss_pred             HHHHHHHHHhCCChhHHHHHHHHHHHHhhhhhhhhhhhhcccCCchhHHHHHHHHHHHHHHHhhcCccCccccCCccchh
Q 014600           45 TYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKV  124 (422)
Q Consensus        45 ~~l~~f~t~~gls~~~~g~i~~i~~l~~ai~~p~~G~lsDr~Grrrp~ll~g~i~~~i~~~~lf~~~~p~~~~~~~~~~~  124 (422)
                      +.+.++..|.|+|.+++|++.++..+..++..|+.|+++||+||||. +..+.++.+++..+.-.  .+. ..  .+.. 
T Consensus        45 ~~~~p~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~-~~~~~~~~~~~~~~~~~--~~~-~~--~~~~-  117 (447)
T d1pw4a_          45 ALAMPYLVEQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVF-LPAGLILAAAVMLFMGF--VPW-AT--SSIA-  117 (447)
T ss_dssp             HHHHHHTTSSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHH-HHHHHHHHHHHHHHHHH--CHH-HH--SSSS-
T ss_pred             HHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHH-HHHHHHHHHHHHhhccc--cch-hh--hhHH-
Confidence            34455666669999999999999999999999999999999999887 55677777666544321  110 00  1111 


Q ss_pred             hhHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchHHHHHH
Q 014600          125 ETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYRW  204 (422)
Q Consensus       125 ~~~~~~~~~~l~~~~~~~~~~p~~al~~~~t~~~~eR~~l~~~~~~~~~ig~~l~~~~~~~l~~~~~~~g~~~~~~~~~~  204 (422)
                         .+++...+.+++.+....+..+++.|+.+ ++||++..++.+.+..+|..+++.+...+....         .+|++
T Consensus       118 ---~~~~~~~~~g~~~~~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~---------~~w~~  184 (447)
T d1pw4a_         118 ---VMFVLLFLCGWFQGMGWPPCGRTMVHWWS-QKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWF---------NDWHA  184 (447)
T ss_dssp             ---HHHHHHHHHHHHHHHTHHHHHHHHHTTCT-TTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHT---------CCSTT
T ss_pred             ---HHHHHHHHHHHhhhhhhhHHHHHHHHHHH-hhcccccccccccccchhhhhhhhhhhhHhhhh---------hcccc
Confidence               22333456778888888888999999986 688999999999999999888877665555432         25666


Q ss_pred             HHHHHHHHHHHHHhhhhccccCcccccc-----c--C------------CCcchhhhHHHHHHhHHHHHHHHHHHHHHHH
Q 014600          205 IAYSSIFIGCCFVGIFLSRTEEPRLKMG-----L--R------------GNSHARISWAYWFKKILYYQVALVYMLTRLV  265 (422)
Q Consensus       205 ~~~i~~~i~~i~~~i~~~~~~E~~~~~~-----~--~------------~~~~~~~~~~~~~~n~~f~~~~~~~~~~~~~  265 (422)
                      .+++.+++.++..++.++..+|++.+..     +  +            +....+...+..++||.++......++....
T Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (447)
T d1pw4a_         185 ALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLL  264 (447)
T ss_dssp             CTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTCCC-------------CCTHHHHHHTSSCHHHHHHHHHHHHHHHH
T ss_pred             cchhhhhhHHHHHHHHHHhcccchhhcccchhhhhhhhcccchhhccccccchhhHHHHHHHcCchHHHHHHHhhhhhhh
Confidence            6666666666666666666666542110     0  0            0011223356677888888777777777777


Q ss_pred             HHhhhHHHHHHhhhccCccchh
Q 014600          266 VNVSQAYLAFYVINDLRMGQSA  287 (422)
Q Consensus       266 ~~~~~~y~~~y~~~~~~l~~~~  287 (422)
                      ......+.+.|+.+..+.+...
T Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~  286 (447)
T d1pw4a_         265 RYGILDWSPTYLKEVKHFALDK  286 (447)
T ss_dssp             HHHHHHHHHHHBTTBSCCCHHH
T ss_pred             hhcchhhhhhhcccccccccch
Confidence            7788899999999888876543

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.73  E-value=9.5e-17  Score=153.74  Aligned_cols=84  Identities=15%  Similarity=0.188  Sum_probs=68.6

Q ss_pred             CceeeeeeeccchhHHHHHHHHHHHHHHHHHHh-CCChhHHHHHHHHHHHHhhhhhhhhhhhhcccCCchhHHHHHHHHH
Q 014600           22 GRWSVLYYGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLV  100 (422)
Q Consensus        22 ~~~~~~~y~~g~~~~~~~~~~~~~~l~~f~t~~-gls~~~~g~i~~i~~l~~ai~~p~~G~lsDr~Grrrp~ll~g~i~~  100 (422)
                      +.++.+.++...+...+......++++.|++|. |+|++++|++.++..+...+.+|+.|+++||+||||.++ .+....
T Consensus         5 kn~~~~~l~~~~f~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~grr~~l~-~~~~~~   83 (417)
T d1pv7a_           5 KNTNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLL-WIITGM   83 (417)
T ss_dssp             HSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTCTHHH-HHHHHH
T ss_pred             cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHH-HHHHHH
Confidence            334556666777777788888889999999997 999999999999999999999999999999999999854 455555


Q ss_pred             HHHHHH
Q 014600          101 AVSFSS  106 (422)
Q Consensus       101 ~i~~~~  106 (422)
                      .++..+
T Consensus        84 ~~~~~~   89 (417)
T d1pv7a_          84 LVMFAP   89 (417)
T ss_dssp             HHTHHH
T ss_pred             HHHHHH
Confidence            554433

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=98.80  E-value=2.2e-08  Score=96.33  Aligned_cols=151  Identities=7%  Similarity=-0.008  Sum_probs=94.0

Q ss_pred             eeeccchhHHHHHHHHHHHHHHHHHHh-CCChhHHHHHHHHHHHHhhhhhhhhhhhhcccCCchhHHHHHHHHHHHHHHH
Q 014600           28 YYGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSS  106 (422)
Q Consensus        28 ~y~~g~~~~~~~~~~~~~~l~~f~t~~-gls~~~~g~i~~i~~l~~ai~~p~~G~lsDr~Grrrp~ll~g~i~~~i~~~~  106 (422)
                      ......+...........+++.|+.+. |.+....+....+..+...+..++.|+++||++||+................
T Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  332 (447)
T d1pw4a_         253 YIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIAT  332 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhhhhhhhhhcchhhhhhhcccccccccchhhhhhhcchhhhhhhhhhhhhhhhhccccccccccchhHHHHHHHH
Confidence            333444445555555667888888888 9999999999999999999999999999999998765332221111111111


Q ss_pred             hhcCccCccccCCccchhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCccchhhHHHHHHHHHHHH-HHHHHHHHHH
Q 014600          107 VFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVA-NLSLYAIAFI  185 (422)
Q Consensus       107 lf~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~al~~~~t~~~~eR~~l~~~~~~~~~ig-~~l~~~~~~~  185 (422)
                      +..   .  .....+.+..    .+..++.+.+.+.......++..|..+ +++|++..++.+....++ .++++.+.+.
T Consensus       333 ~~~---~--~~~~~~~~~~----~~~~~~~g~~~~~~~~~~~~~~~~~~p-~~~~g~~~g~~~~~~~~~g~~~~~~~~g~  402 (447)
T d1pw4a_         333 IVY---W--MNPAGNPTVD----MICMIVIGFLIYGPVMLIGLHALELAP-KKAAGTAAGFTGLFGYLGGSVAASAIVGY  402 (447)
T ss_dssp             HHT---T--SCCTTCHHHH----HHHHHHHHHHHTHHHHHHHHHHHHTSC-TTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHH---H--hcccccHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHcC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            111   1  0111122211    111224555555666667778888876 578999999877766664 4555555555


Q ss_pred             HHh
Q 014600          186 VFS  188 (422)
Q Consensus       186 l~~  188 (422)
                      +.+
T Consensus       403 ~~~  405 (447)
T d1pw4a_         403 TVD  405 (447)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            544

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=98.72  E-value=9.7e-09  Score=96.75  Aligned_cols=149  Identities=10%  Similarity=0.022  Sum_probs=106.3

Q ss_pred             CCChhHHHHHHHHHHHHhhhhhhhhhhhhcccCCchhHHHHHHHHHHHHHHHhhcCccCccccCCccchhhhHHHHHHHH
Q 014600           55 GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVETISYCVFAA  134 (422)
Q Consensus        55 gls~~~~g~i~~i~~l~~ai~~p~~G~lsDr~Grrrp~ll~g~i~~~i~~~~lf~~~~p~~~~~~~~~~~~~~~~~~~~~  134 (422)
                      +.+....+.......+...+..++.|++.||+|||+. +..+....+++...+..       .+  +.+..    .+..+
T Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~-~~~~~~~~~~~~~~~~~-------~~--~~~~~----~~~~~  320 (417)
T d1pv7a_         255 EQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNA-LLLAGTIMSVRIIGSSF-------AT--SALEV----VILKT  320 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHHH-HHHHHHHHHHHHHHHHT-------CC--CHHHH----HHHHH
T ss_pred             ccchhhhcccccccccccccchhhhhhhhcccccccc-hhhhHHHHHHhhhcccc-------cc--ccchh----hHHHH
Confidence            4456778888899999999999999999999999887 45566666666554432       11  12211    22234


Q ss_pred             HHHHHHHHHHhhhhhhhhhccCCccchhhHHHHH-HHHHHHHHHHHHHHHHHHHhhccCCCCCchHHHHHHHHHHHHHHH
Q 014600          135 IFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCR-NAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIG  213 (422)
Q Consensus       135 l~~~~~~~~~~p~~al~~~~t~~~~eR~~l~~~~-~~~~~ig~~l~~~~~~~l~~~~~~~g~~~~~~~~~~~~~i~~~i~  213 (422)
                      +.+++++....+..++..|..+ +++|++..+.. +....+|..+++.+.+.+.+          ..|++..+.+.+++.
T Consensus       321 l~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~----------~~g~~~~~~~~~~~~  389 (417)
T d1pv7a_         321 LHMFEVPFLLVGCFKYITSQFE-VRFSATIYLVCFCFFKQLAMIFMSVLAGNMYE----------SIGFQGAYLVLGLVA  389 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHSC-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHH----------HHCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHCC-HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHCHHHHHHHHHHHH
Confidence            6788888888889999999886 67899888864 44556777777766665554          346777777787888


Q ss_pred             HHHHhhhhccccCcc
Q 014600          214 CCFVGIFLSRTEEPR  228 (422)
Q Consensus       214 ~i~~~i~~~~~~E~~  228 (422)
                      ++..++.++..|+++
T Consensus       390 ~~~~~~~~~~l~~~~  404 (417)
T d1pv7a_         390 LGFTLISVFTLSGPG  404 (417)
T ss_dssp             HHHHHHHHHHSCCSS
T ss_pred             HHHHHHHHHhhcCCC
Confidence            777777777777653