Citrus Sinensis ID: 014614

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-
Protein Sequence
MDAMRKQLDVLMGANRNGDVREVNRKYYDRDVCRLYLAGLCPHELFQLTKMDMGPCPKVHSLQLRKEYEEAKAKGVDNYDRELEDAIDRLIVECDRKIGRALKRLEDDDAKAAIAISVSEVTQTPEVLELSKQIKEKLKETDQYDYEGKTDLKIRALEVVEELRTKRADKQSMLLLDAFNKDRASLPQPLPNPPPLAPLPIPAPDARTQEMINEKLKKAEDLGEQGMVDEAQKALEEAEALKKLPARQEPTLDSSKYTAADVRITDQKLRVCDICGAFLSVYDSDRRLADHFGGKLHLGYMQIRDKLAELQEERNKKHKDRCDDRRSKERSKDQDREPSRDREKEASRDRDRGDSRDRGRDYDRSSRDRDRYYDRDRRYDRERDRDSDRHRSYDSRSHRRSRSRSKERSRDYDRHRRHDRY
Secondary Structure (PSIPRED)
cHHHHHHHHHHcccccccccccccccccccccHHHHHcccccHHHHHccccccccccccccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHccccccccccccccccHHHHHHcccccccccccccccccccHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHcccccccccccccccccHHHHHHHHHcccccHHHHccHHccccccccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHEEEHHHHHHHHHccccHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHcccccHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
MDAMRKQLDVLMganrngdvrevnrkyydrdvcrlylaglcphelfqltkmdmgpcpkvhslQLRKEYEEAKakgvdnydRELEDAIDRLIVECDRKIGRALKRLEDDDAKAAIAISVSEVTQTPEVLELSKQIKEKLKetdqydyegktDLKIRALEVVEELRTKRADKQSMLLLDAFNkdraslpqplpnppplaplpipapdarTQEMINEKLKKAEDLGEQGMVDEAQKALEEAEALKklparqeptldsskytaadvritdqkLRVCDICGAFLSVYDSDRrladhfggklhLGYMQIRDKLAELQEERNKkhkdrcddrrskerskdqdrepsrdrekeasrdrdrgdsrdrgrdydrssrdrdryydrdrrydrerdrdsdrhrsydsrshrrsrsrskersrdydrhrrhdry
Flexible Loop (DISEMBL)
MDAMRKQLDVlmganrngdvrevnrkyydRDVCRLYLAGLCPHELFQLTKMDMGPCPKVHSLQLRKEYEeakakgvdnydrELEDAIDRLIVECDRKIGRAlkrledddaKAAIAIsvsevtqtpevlELSKQIKEklketdqydyegktdlkiRALEVVEELRTKRADKQSMLLLDAFNKDRASLPQPLPNPPPLAPLPIPAPDARTQEMINEKLKKAEDLGEQGMVDEAQKALEEAEALkklparqeptldsskytaadvritdqklrVCDICGAFLSVYDSDRRLADHFGGKLHLGYMQIRDKLAELQeernkkhkdrcddrrskerskdqdrepsrdrekeasrdrdrgdsrdrgrdydrssrdrdryydrdrrydrerdrdsdrhrsydsrshrrsrsrskersrdydrhrrhdry
Low Complexity Region (SEG)
MDAMRKQLDVLMGANRNGDVREVNRKYYDRDVCRLYLAGLCPHELFQLTKMDMGPCPKVHSLQLRKEYEEAKAKGVDNYDRELEDAIDRLIVECDRKIGRALKRLEDDDAKAAIAISVSEVTQTPEVLELSKQIKEKLKETDQYDYEGKTDLKIRALEVVEELRTKRADKQSMLLLDAFNKDRaslpqplpnppplaplpipapdaRTQEMINEKLKKAEDLGEQGMVDEAQkaleeaealkklPARQEPTLDSSKYTAADVRITDQKLRVCDICGAFLSVYDSDRRLADHFGGKLHLGYMQIRDKLAELQEERNKKHKDRCDDRRSKERSKDQDREPSRDREKEAsrdrdrgdsrdrgrdydrssrdrdryydrdrrydrerdrdsdrhrsydsrshrrsrsrskersrdydrhrrhdry
Disordered region (IsUnstruct)
*****************GDVREVNRKYYDRDVCRLYLAGLCPHELFQLTKMDMGPCPKVHSLQLRKEY****AKGVDNYDRELEDAIDRLIVECDRKIGRALKRLEDDDAKAAIAISVSEVT*********************YDYEGKTDLKIRALEVVEE***********************************************************************************************TAADVRITDQKLRVCDICGAFLSVYDSDRRLADHFGGKLHLGYMQIRDK*******************************************************************************************************************
Disordered Region (DISOPRED)
*DAMRKQLDVLMG*************YYDRDVCRLYLAGLCPHELFQLTKMDMGPCPKVHSLQLRKEYEEAKAKGVDNYDRELEDAIDRLIVECDRKIGRA***************************ELSKQIKEKLKETDQYDYEGKTDLKIRALEVVEELRTKRAD**********************************************LKKA******************************************************ICGAFLS*******************YMQIRDKLAELQ**************************************************************************************************************
Disordered Region (DISEMBL)
MDAMRKQLDVLMGANRNGDVREVNRKYYDRDVCRLYLAGLCPHELFQLTKMDMGPCPKVHSLQLRKEYEEAKAKGVDNYDRELEDAIDRLIVECDRKIGRALKRLEDDDAKAAIAISVSEVTQTPEVLELSKQIKEKLKETDQYDYEGKTDLKIRALEVVEELRTKRADKQSMLLLDAFNKDRASLPQPLPNPPPLAPLPIPAPDARTQEMINEKLKKAEDLGEQGMVDEAQKALEEAEALKKLPARQEPTLDSSKYTAADVRITDQKLRVCDICGAFLSVYDSDRRLADHFGGKLHLGYMQIRDKLAELQE*******************************************************DRDRYYDRDRR*******************************************
Disordered Region (DISPRO)
*********VL*G**********NRKYYDRDVCRLYLAGLCPHELFQLTKMDMGPCPKVHSLQLRKEYEEAKAKGVDNYDRELEDAIDRLIVECDRKIGRALKRLEDDDAKAAIAISVSEVTQTPEVLELSKQIKEKLKETDQYDYEGKTDLKIRALEVVEELRTKRADKQSMLLLDAFNKDRASLPQP***********IPAPDARTQEMINEKLKKAEDLGEQGMVDEAQKALEEAEALKKLPARQEPTL******AADVRITDQKLRVCDICGAFLSVYDSDRRLADHFGGKLHLGYMQIRDKLAELQEERNK*********************************************************************************************************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDAMRKQLDVLMGANRNGDVREVNRKYYDRDVCRLYLAGLCPHELFQLTKMDMGPCPKVHSLQLRKEYEEAKAKGVDNYDRELEDAIDRLIVECDRKIGRALKRLEDDDAKAAIAISVSEVTQTPEVLELSKQIKEKLKETDQYDYEGKTDLKIRALEVVEELRTKRADKQSMLLLDAFNKDRASLPQPLPNPPPLAPLPIPAPDARTQEMINEKLKKAEDLGEQGMVDEAQKALEEAEALKKLPARQEPTLDSSKYTAADVRITDQKLRVCDICGAFLSVYDSDRRLADHFGGKLHLGxxxxxxxxxxxxxxxxxxxxxRCDDRRSKERSKDQDREPSRDREKEASRDRDRGDSRDRGRDYDRSSRDRDRYYDRDRRYDRERDRDSDRHRSYDSRSHRRSRSRSKERSRDYDRHRRHDRY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	421	2.2.26 [Sep-21-2011]
Q9CYI4	371	Putative RNA-binding prot	yes	no	0.247	0.280	0.482	1e-20
Q9NQ29	371	Putative RNA-binding prot	yes	no	0.247	0.280	0.482	1e-20
Q7TNC4	392	Putative RNA-binding prot	no	no	0.268	0.288	0.420	3e-19
Q9Y383	392	Putative RNA-binding prot	no	no	0.268	0.288	0.420	3e-19
Q54XQ8	360	Luc7-like protein OS=Dict	yes	no	0.410	0.480	0.312	2e-16
Q5R8W6	432	Luc7-like protein 3 OS=Po	yes	no	0.396	0.386	0.301	6e-15
O95232	432	Luc7-like protein 3 OS=Ho	no	no	0.396	0.386	0.301	6e-15
Q5SUF2	432	Luc7-like protein 3 OS=Mu	no	no	0.396	0.386	0.301	6e-15
Q3SX41	432	Luc7-like protein 3 OS=Bo	no	no	0.396	0.386	0.301	7e-15
Q9USM4	264	U1 snRNP-associated prote	yes	no	0.225	0.359	0.381	1e-14

>sp|Q9CYI4|LUC7L_MOUSE Putative RNA-binding protein Luc7-like 1 OS=Mus musculus GN=Luc7l PE=2 SV=2

 Score =  101 bits (252), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 55/114 (48%), Positives = 76/114 (66%), Gaps = 10/114 (8%)

Query: 210 EMINEKLKKAEDLGEQGMVDEAQKALEEAEALKKLPARQEPTLDSSKYTAADVRITDQKL 269
           E I + L KAE LG +G VDE+QK L E E   K+ A+++   +  + +        QKL
Sbjct: 131 EEIGKLLAKAEQLGAEGNVDESQKILMEVE---KVRAKKKEAEEEYRNSMPASSFQQQKL 187

Query: 270 RVCDICGAFLSVYDSDRRLADHFGGKLHLGYMQIRDKL-------AELQEERNK 316
           RVC++C A+L ++D+DRRLADHFGGKLHLG++QIR+KL       AE QE+RN+
Sbjct: 188 RVCEVCSAYLGLHDNDRRLADHFGGKLHLGFIQIREKLDQLRKTVAEKQEKRNQ 241

May bind to RNA via its Arg/Ser-rich domain.
Mus musculus (taxid: 10090)

>sp|Q9NQ29|LUC7L_HUMAN Putative RNA-binding protein Luc7-like 1 OS=Homo sapiens GN=LUC7L PE=1 SV=1

 Score =  101 bits (252), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 55/114 (48%), Positives = 76/114 (66%), Gaps = 10/114 (8%)

Query: 210 EMINEKLKKAEDLGEQGMVDEAQKALEEAEALKKLPARQEPTLDSSKYTAADVRITDQKL 269
           E I + L KAE LG +G VDE+QK L E E   K+ A+++   +  + +        QKL
Sbjct: 131 EEIGKLLAKAEQLGAEGNVDESQKILMEVE---KVRAKKKEAEEEYRNSMPASSFQQQKL 187

Query: 270 RVCDICGAFLSVYDSDRRLADHFGGKLHLGYMQIRDKL-------AELQEERNK 316
           RVC++C A+L ++D+DRRLADHFGGKLHLG++QIR+KL       AE QE+RN+
Sbjct: 188 RVCEVCSAYLGLHDNDRRLADHFGGKLHLGFIQIREKLDQLRKTVAEKQEKRNQ 241

May bind to RNA via its Arg/Ser-rich domain.

Homo sapiens (taxid: 9606)

>sp|Q7TNC4|LC7L2_MOUSE Putative RNA-binding protein Luc7-like 2 OS=Mus musculus GN=Luc7l2 PE=1 SV=1

 Score = 97.1 bits (240), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 53/126 (42%), Positives = 78/126 (61%), Gaps = 13/126 (10%)

Query: 201 IPAPDARTQEM---INEKLKKAEDLGEQGMVDEAQKALEEAEALKKLPARQEPTLDSSKY 257
           + A   R  E+   I + L K E LG +G V+E+QK ++E E   K  A++    +  + 
Sbjct: 119 VAAKAERVHELNEEIGKLLAKVEQLGAEGNVEESQKVMDEVE---KARAKKREAEEVYRN 175

Query: 258 TAADVRITDQKLRVCDICGAFLSVYDSDRRLADHFGGKLHLGYMQIRDKLAEL------- 310
           +        QKLRVC++C A+L ++D+DRRLADHFGGKLHLG+++IR+KL EL       
Sbjct: 176 SMPASSFQQQKLRVCEVCSAYLGLHDNDRRLADHFGGKLHLGFIEIREKLEELKRVVAEK 235

Query: 311 QEERNK 316
           QE+RN+
Sbjct: 236 QEKRNQ 241

May bind to RNA via its Arg/Ser-rich domain.

Mus musculus (taxid: 10090)

>sp|Q9Y383|LC7L2_HUMAN Putative RNA-binding protein Luc7-like 2 OS=Homo sapiens GN=LUC7L2 PE=1 SV=2

 Score = 96.7 bits (239), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 53/126 (42%), Positives = 78/126 (61%), Gaps = 13/126 (10%)

Query: 201 IPAPDARTQEM---INEKLKKAEDLGEQGMVDEAQKALEEAEALKKLPARQEPTLDSSKY 257
           + A   R  E+   I + L K E LG +G V+E+QK ++E E   K  A++    +  + 
Sbjct: 119 VAAKAERVHELNEEIGKLLAKVEQLGAEGNVEESQKVMDEVE---KARAKKREAEEVYRN 175

Query: 258 TAADVRITDQKLRVCDICGAFLSVYDSDRRLADHFGGKLHLGYMQIRDKLAEL------- 310
           +        QKLRVC++C A+L ++D+DRRLADHFGGKLHLG+++IR+KL EL       
Sbjct: 176 SMPASSFQQQKLRVCEVCSAYLGLHDNDRRLADHFGGKLHLGFIEIREKLEELKRVVAEK 235

Query: 311 QEERNK 316
           QE+RN+
Sbjct: 236 QEKRNQ 241

May bind to RNA via its Arg/Ser-rich domain.

Homo sapiens (taxid: 9606)

>sp|Q54XQ8|LUC7L_DICDI Luc7-like protein OS=Dictyostelium discoideum GN=crop PE=3 SV=1

 Score = 87.0 bits (214), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 61/195 (31%), Positives = 99/195 (50%), Gaps = 22/195 (11%)

Query: 1   MDAMRKQLDVLMGANRN---GDVREVNRKYYDRDVCRLYLAGLCPHELFQLTKM-DMGPC 56
           MDA+R QLD  +G +RN    D  +V   + D D+C+ +L GLCPHELF    + D+GPC
Sbjct: 1   MDAIRAQLDEFLGKDRNLLPKDRIKVENDFNDPDICKFFLCGLCPHELFTNANIRDLGPC 60

Query: 57  PKVHSLQLRKEYEEAKAKGVDNYDRELEDAIDRLIVECDRKIGRALKRL----EDDDAKA 112
            K+H     K+Y+  K K   +Y+RE    I+ LI + D+KI R  +RL      D    
Sbjct: 61  SKLHDENCVKQYQNNKDKDKYDYEREWVRVIEGLISDNDKKIKRNKERLLQNPNGDANHH 120

Query: 113 AIAI---SVSEV-----------TQTPEVLELSKQIKEKLKETDQYDYEGKTDLKIRALE 158
              I   S+S++            Q  ++ EL  +I+E LK+ ++   EG+       + 
Sbjct: 121 GGPIQQQSISQLDDEEGGLLPDKEQNSKITELDLKIQELLKKAEELGEEGQITEAQALMT 180

Query: 159 VVEELRTKRADKQSM 173
             +EL+ ++ + + +
Sbjct: 181 EADELKNQKVELEKI 195

May play a role in RNA splicing.

Dictyostelium discoideum (taxid: 44689)

>sp|Q5R8W6|LC7L3_PONAB Luc7-like protein 3 OS=Pongo abelii GN=LUC7L3 PE=2 SV=1

 Score = 82.4 bits (202), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 51/169 (30%), Positives = 88/169 (52%), Gaps = 2/169 (1%)

Query: 1   MDAMRKQLDVLMGANRN--GDVREVNRKYYDRDVCRLYLAGLCPHELFQLTKMDMGPCPK 58
           M +  + LD LMG +RN   D +  N ++    VC+ YL G CP ELF  T+ D+GPC K
Sbjct: 1   MISAAQLLDELMGRDRNLAPDEKRSNVRWDHESVCKYYLCGFCPAELFTNTRSDLGPCEK 60

Query: 59  VHSLQLRKEYEEAKAKGVDNYDRELEDAIDRLIVECDRKIGRALKRLEDDDAKAAIAISV 118
           +H   LRK+YE++       Y+R+    +  L+ E +R+I R   RL     + +   + 
Sbjct: 61  IHDENLRKQYEKSSRFMKVGYERDFLRYLQSLLAEVERRIRRGHARLALSQNQQSSGAAG 120

Query: 119 SEVTQTPEVLELSKQIKEKLKETDQYDYEGKTDLKIRALEVVEELRTKR 167
                  ++  L+ +I   L++ ++   EGK +     +++VE+L+ +R
Sbjct: 121 PTGKNEEKIQVLTDKIDVLLQQIEELGSEGKVEEAQGMMKLVEQLKEER 169

Binds cAMP regulatory element DNA sequence. May play a role in RNA splicing.

Pongo abelii (taxid: 9601)

>sp|O95232|LC7L3_HUMAN Luc7-like protein 3 OS=Homo sapiens GN=LUC7L3 PE=1 SV=2

 Score = 82.4 bits (202), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 51/169 (30%), Positives = 88/169 (52%), Gaps = 2/169 (1%)

Query: 1   MDAMRKQLDVLMGANRN--GDVREVNRKYYDRDVCRLYLAGLCPHELFQLTKMDMGPCPK 58
           M +  + LD LMG +RN   D +  N ++    VC+ YL G CP ELF  T+ D+GPC K
Sbjct: 1   MISAAQLLDELMGRDRNLAPDEKRSNVRWDHESVCKYYLCGFCPAELFTNTRSDLGPCEK 60

Query: 59  VHSLQLRKEYEEAKAKGVDNYDRELEDAIDRLIVECDRKIGRALKRLEDDDAKAAIAISV 118
           +H   LRK+YE++       Y+R+    +  L+ E +R+I R   RL     + +   + 
Sbjct: 61  IHDENLRKQYEKSSRFMKVGYERDFLRYLQSLLAEVERRIRRGHARLALSQNQQSSGAAG 120

Query: 119 SEVTQTPEVLELSKQIKEKLKETDQYDYEGKTDLKIRALEVVEELRTKR 167
                  ++  L+ +I   L++ ++   EGK +     +++VE+L+ +R
Sbjct: 121 PTGKNEEKIQVLTDKIDVLLQQIEELGSEGKVEEAQGMMKLVEQLKEER 169

Binds cAMP regulatory element DNA sequence. May play a role in RNA splicing.

Homo sapiens (taxid: 9606)

>sp|Q5SUF2|LC7L3_MOUSE Luc7-like protein 3 OS=Mus musculus GN=Luc7l3 PE=1 SV=1

 Score = 82.4 bits (202), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 51/169 (30%), Positives = 88/169 (52%), Gaps = 2/169 (1%)

Query: 1   MDAMRKQLDVLMGANRN--GDVREVNRKYYDRDVCRLYLAGLCPHELFQLTKMDMGPCPK 58
           M +  + LD LMG +RN   D +  N ++    VC+ YL G CP ELF  T+ D+GPC K
Sbjct: 1   MISAAQLLDELMGRDRNLAPDEKRSNVRWDHESVCKYYLCGFCPAELFTNTRSDLGPCEK 60

Query: 59  VHSLQLRKEYEEAKAKGVDNYDRELEDAIDRLIVECDRKIGRALKRLEDDDAKAAIAISV 118
           +H   LRK+YE++       Y+R+    +  L+ E +R+I R   RL     + +   + 
Sbjct: 61  IHDENLRKQYEKSSRFMKVGYERDFLRYLQSLLAEVERRIRRGHARLALSQNQQSSGAAG 120

Query: 119 SEVTQTPEVLELSKQIKEKLKETDQYDYEGKTDLKIRALEVVEELRTKR 167
                  ++  L+ +I   L++ ++   EGK +     +++VE+L+ +R
Sbjct: 121 PTGKNEEKIQVLTDKIDVLLQQIEELGSEGKVEEAQGMMKLVEQLKEER 169

Binds cAMP regulatory element DNA sequence. May play a role in RNA splicing.

Mus musculus (taxid: 10090)

>sp|Q3SX41|LC7L3_BOVIN Luc7-like protein 3 OS=Bos taurus GN=LUC7L3 PE=2 SV=1

 Score = 82.0 bits (201), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 51/169 (30%), Positives = 88/169 (52%), Gaps = 2/169 (1%)

Query: 1   MDAMRKQLDVLMGANRN--GDVREVNRKYYDRDVCRLYLAGLCPHELFQLTKMDMGPCPK 58
           M +  + LD LMG +RN   D +  N ++    VC+ YL G CP ELF  T+ D+GPC K
Sbjct: 1   MISAAQLLDELMGRDRNLAPDEKRSNVRWDHESVCKYYLCGFCPAELFTNTRSDLGPCEK 60

Query: 59  VHSLQLRKEYEEAKAKGVDNYDRELEDAIDRLIVECDRKIGRALKRLEDDDAKAAIAISV 118
           +H   LRK+YE++       Y+R+    +  L+ E +R+I R   RL     + +   + 
Sbjct: 61  IHDENLRKQYEKSSRFMKVGYERDFLRYLQSLLAEVERRIRRGHARLALSQNQQSSGAAG 120

Query: 119 SEVTQTPEVLELSKQIKEKLKETDQYDYEGKTDLKIRALEVVEELRTKR 167
                  ++  L+ +I   L++ ++   EGK +     +++VE+L+ +R
Sbjct: 121 PTGKNEEKIQVLTDKIDVLLQQIEELGSEGKVEEAQGMMKLVEQLKEER 169

Binds cAMP regulatory element DNA sequence. May play a role in RNA splicing.

Bos taurus (taxid: 9913)

>sp|Q9USM4|LUC7_SCHPO U1 snRNP-associated protein usp106 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=usp106 PE=1 SV=1

 Score = 81.6 bits (200), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 37/97 (38%), Positives = 61/97 (62%)

Query: 5   RKQLDVLMGANRNGDVREVNRKYYDRDVCRLYLAGLCPHELFQLTKMDMGPCPKVHSLQL 64
           RK ++ LMG+N +         + DR VCR +L G+CPH++F  TKMD+GPCPK+HS +L
Sbjct: 6   RKIIEQLMGSNLSNFTSRGLVHFTDRKVCRSFLCGICPHDIFTNTKMDLGPCPKIHSDKL 65

Query: 65  RKEYEEAKAKGVDNYDRELEDAIDRLIVECDRKIGRA 101
           + +YE A       Y+ +  + ++R + +C+++I  A
Sbjct: 66  KSDYERASYSHDYGYEWDYLEDLERHVDDCNKRIDIA 102

Component of the U1 snRNP particle, which recognizes and binds the 5'-splice site of pre-mRNA. Together with other non-snRNP factors, U1 snRNP forms the spliceosomal commitment complex, that targets pre-mRNA to the splicing pathway.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	421
356531876	414	PREDICTED: putative RNA-binding protein	0.980	0.997	0.900	1e-177
358248056	414	uncharacterized protein LOC100793888 [Gl	0.980	0.997	0.905	1e-169
357507823	410	Luc7-like protein [Medicago truncatula]	0.824	0.846	0.885	1e-164
225430908	419	PREDICTED: putative RNA-binding protein	0.976	0.980	0.862	1e-163
147792792	419	hypothetical protein VITISV_000356 [Viti	0.976	0.980	0.857	1e-162
449442277	413	PREDICTED: putative RNA-binding protein	0.978	0.997	0.800	1e-157
18418301	404	LUC7 related protein [Arabidopsis thalia	0.760	0.792	0.857	1e-157
30678827	402	LUC7 related protein [Arabidopsis thalia	0.954	1.0	0.745	1e-157
119935927	402	At3g03340 [Arabidopsis thaliana]	0.954	1.0	0.743	1e-157
255547526	424	ATP binding protein, putative [Ricinus c	0.833	0.827	0.877	1e-157

>gi|356531876|ref|XP_003534502.1| PREDICTED: putative RNA-binding protein Luc7-like 2-like [Glycine max]

 Score =  627 bits (1618), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 380/422 (90%), Positives = 392/422 (92%), Gaps = 9/422 (2%)

Query: 1   MDAMRKQLDVLMGANRNGDVREVNRKYYDRDVCRLYLAGLCPHELFQLTKMDMGPCPKVH 60
           MDA+RKQLDVLMGANRNGDVREVNRKYYDRDVCRLYL GLCPHELFQLTKMDMGPCPKVH
Sbjct: 1   MDAIRKQLDVLMGANRNGDVREVNRKYYDRDVCRLYLVGLCPHELFQLTKMDMGPCPKVH 60

Query: 61  SLQLRKEYEEAKAKGVDNYDRELEDAIDRLIVECDRKIGRALKRLEDDDAKAAIAISVSE 120
           SLQLRKEYEEAKAKG DNYDRELED ID+LI ECDRKIGRALKRLEDDDAKAAIAISVSE
Sbjct: 61  SLQLRKEYEEAKAKGTDNYDRELEDVIDKLIGECDRKIGRALKRLEDDDAKAAIAISVSE 120

Query: 121 VTQTPEVLELSKQIKEKLKETDQYDYEGKTDLKIRALEVVEELRTKRADKQSMLLLDAFN 180
           VTQT EVLELSKQIKEKLKE DQYD EGK+DLKIRALEVVEELRTKRADKQSMLLLDAFN
Sbjct: 121 VTQTDEVLELSKQIKEKLKEADQYDLEGKSDLKIRALEVVEELRTKRADKQSMLLLDAFN 180

Query: 181 KDRASLPQPLPNPPPLAPLPIPAPDARTQEMINEKLKKAEDLGEQGMVDEAQKALEEAEA 240
           KDRASLP PLPNPPPLAPLP+ APDARTQEMINEKLKKAEDLGEQGMVDEAQKALEEAEA
Sbjct: 181 KDRASLPTPLPNPPPLAPLPVVAPDARTQEMINEKLKKAEDLGEQGMVDEAQKALEEAEA 240

Query: 241 LKKLPARQEPTLDSSKYTAADVRITDQKLRVCDICGAFLSVYDSDRRLADHFGGKLHLGY 300
           LKKLPARQEP LDSSKYTA DVRITDQKLRVCDICGAFLSVYDSDRRLADHFGGKLHLGY
Sbjct: 241 LKKLPARQEPVLDSSKYTAVDVRITDQKLRVCDICGAFLSVYDSDRRLADHFGGKLHLGY 300

Query: 301 MQIRDKLAELQEERNKKHK-DRCDDRRSKERSKDQDREPSRDREKEASRDRDRGDSRDRG 359
           MQIR+KLAELQEERNK  K DR DDRRSKERS+D+DRE SRDRE         GDSR+RG
Sbjct: 301 MQIREKLAELQEERNKSRKTDRLDDRRSKERSRDRDRESSRDRE--------LGDSRERG 352

Query: 360 RDYDRSSRDRDRYYDRDRRYDRERDRDSDRHRSYDSRSHRRSRSRSKERSRDYDRHRRHD 419
           RD+DR SRD DR+YDRDR YDR+RDRDSDR RSYDSRS RRSRSRS+ERSRDYDRHRRHD
Sbjct: 353 RDHDRRSRDHDRHYDRDRGYDRDRDRDSDRTRSYDSRSRRRSRSRSRERSRDYDRHRRHD 412

Query: 420 RY 421
           RY
Sbjct: 413 RY 414

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358248056|ref|NP_001239802.1| uncharacterized protein LOC100793888 [Glycine max] gi|255636477|gb|ACU18577.1| unknown [Glycine max]

 Score =  600 bits (1546), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 382/422 (90%), Positives = 394/422 (93%), Gaps = 9/422 (2%)

Query: 1   MDAMRKQLDVLMGANRNGDVREVNRKYYDRDVCRLYLAGLCPHELFQLTKMDMGPCPKVH 60
           MDA+RKQLDVLMGANRNGDVREVNRKYYDRDVCRLYL GLCPHELFQLTKMDMGPCPKVH
Sbjct: 1   MDAIRKQLDVLMGANRNGDVREVNRKYYDRDVCRLYLVGLCPHELFQLTKMDMGPCPKVH 60

Query: 61  SLQLRKEYEEAKAKGVDNYDRELEDAIDRLIVECDRKIGRALKRLEDDDAKAAIAISVSE 120
           SLQLRKEYEEAKAKG DNYDRELED ID+LI ECDRKIGRALKRLEDDDAKAAIAISVSE
Sbjct: 61  SLQLRKEYEEAKAKGTDNYDRELEDVIDKLIGECDRKIGRALKRLEDDDAKAAIAISVSE 120

Query: 121 VTQTPEVLELSKQIKEKLKETDQYDYEGKTDLKIRALEVVEELRTKRADKQSMLLLDAFN 180
           VTQT EVLELSKQIKEKLKE DQYD EGK+DLKIRALEVVEELRTKRADKQSMLLLDAFN
Sbjct: 121 VTQTDEVLELSKQIKEKLKEADQYDLEGKSDLKIRALEVVEELRTKRADKQSMLLLDAFN 180

Query: 181 KDRASLPQPLPNPPPLAPLPIPAPDARTQEMINEKLKKAEDLGEQGMVDEAQKALEEAEA 240
           KDRASLP PLPNPPPLAPLP+ APDARTQEMINEKLKKAEDLGEQGMVDEAQKALEEAEA
Sbjct: 181 KDRASLPTPLPNPPPLAPLPVVAPDARTQEMINEKLKKAEDLGEQGMVDEAQKALEEAEA 240

Query: 241 LKKLPARQEPTLDSSKYTAADVRITDQKLRVCDICGAFLSVYDSDRRLADHFGGKLHLGY 300
           LKKLPARQEP LDSSKYTAADVRITDQKLRVCDICGAFLSVYDSDRRLADHFGGKLHLGY
Sbjct: 241 LKKLPARQEPVLDSSKYTAADVRITDQKLRVCDICGAFLSVYDSDRRLADHFGGKLHLGY 300

Query: 301 MQIRDKLAELQEERNKKHK-DRCDDRRSKERSKDQDREPSRDREKEASRDRDRGDSRDRG 359
           MQIR+KLAELQEERNK  K DR DDRRSKERS+D+DRE SRD E        RGDSR+RG
Sbjct: 301 MQIREKLAELQEERNKSRKTDRLDDRRSKERSRDRDRESSRDHE--------RGDSRERG 352

Query: 360 RDYDRSSRDRDRYYDRDRRYDRERDRDSDRHRSYDSRSHRRSRSRSKERSRDYDRHRRHD 419
           RD+DR SRDRDR+YDRDR YDR+RDRDSDR RSYDSRS RRSRSRS+ERSRDYDRHRRHD
Sbjct: 353 RDHDRRSRDRDRHYDRDRGYDRDRDRDSDRTRSYDSRSRRRSRSRSQERSRDYDRHRRHD 412

Query: 420 RY 421
           RY
Sbjct: 413 RY 414

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357507823|ref|XP_003624200.1| Luc7-like protein [Medicago truncatula] gi|355499215|gb|AES80418.1| Luc7-like protein [Medicago truncatula]

 Score =  583 bits (1504), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 308/348 (88%), Positives = 330/348 (94%), Gaps = 1/348 (0%)

Query: 1   MDAMRKQLDVLMGANRNGDVREVNRKYYDRDVCRLYLAGLCPHELFQLTKMDMGPCPKVH 60
           MDA+RKQLDVLMGANRNGDVREVNRKYYDRDVCRLYL GLCPHELFQLTKMDMGPCPKVH
Sbjct: 1   MDAIRKQLDVLMGANRNGDVREVNRKYYDRDVCRLYLVGLCPHELFQLTKMDMGPCPKVH 60

Query: 61  SLQLRKEYEEAKAKGVDNYDRELEDAIDRLIVECDRKIGRALKRLEDDDAKAAIAISVSE 120
           SLQLRKEYEEAK+KG D+Y+RELED ID+LI ECDRKIGRALKRLEDDDAKAAIAISVSE
Sbjct: 61  SLQLRKEYEEAKSKGTDSYERELEDVIDKLIGECDRKIGRALKRLEDDDAKAAIAISVSE 120

Query: 121 VTQTPEVLELSKQIKEKLKETDQYDYEGKTDLKIRALEVVEELRTKRADKQSMLLLDAFN 180
           VTQTPE++ELSK+I+EKLKE D++D EG +D+KIRALE+VEELR KRADKQS LLLDAFN
Sbjct: 121 VTQTPEIIELSKEIREKLKEADKFDLEGLSDMKIRALEIVEELRIKRADKQSTLLLDAFN 180

Query: 181 KDRASLPQPLPNPPPLAPLPIPAPDARTQEMINEKLKKAEDLGEQGMVDEAQKALEEAEA 240
           KDRASLPQPLPNPPPLAPLP+  PDARTQEMINEKLKKAEDLGEQG++DEAQKALEEAEA
Sbjct: 181 KDRASLPQPLPNPPPLAPLPVVTPDARTQEMINEKLKKAEDLGEQGLIDEAQKALEEAEA 240

Query: 241 LKKLPARQEPTLDSSKYTAADVRITDQKLRVCDICGAFLSVYDSDRRLADHFGGKLHLGY 300
           LKKLP+RQEP LDSSKYTAADVRITDQKLRVCDICGAFLSVYDSDRRLADHFGGKLHLGY
Sbjct: 241 LKKLPSRQEPPLDSSKYTAADVRITDQKLRVCDICGAFLSVYDSDRRLADHFGGKLHLGY 300

Query: 301 MQIRDKLAELQEERNKKHK-DRCDDRRSKERSKDQDREPSRDREKEAS 347
           MQIR+KLAELQEERNK  K DR DDRRSKERS+D+DREPSRDRE+  S
Sbjct: 301 MQIREKLAELQEERNKSRKIDRLDDRRSKERSRDRDREPSRDRERGES 348

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225430908|ref|XP_002276691.1| PREDICTED: putative RNA-binding protein Luc7-like 2 [Vitis vinifera] gi|297735244|emb|CBI17606.3| unnamed protein product [Vitis vinifera]

 Score =  582 bits (1500), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 370/429 (86%), Positives = 388/429 (90%), Gaps = 18/429 (4%)

Query: 1   MDAMRKQLDVLMGANRNGDVREVNRKYYDRDVCRLYLAGLCPHELFQLTKMDMGPCPKVH 60
           MDA+RKQLDVLMGANRNGDVREVNRKYYDRDVCRL+L GLCPHELFQLTKMDMGPCPKVH
Sbjct: 1   MDAIRKQLDVLMGANRNGDVREVNRKYYDRDVCRLFLVGLCPHELFQLTKMDMGPCPKVH 60

Query: 61  SLQLRKEYEEAKAKGVDNYDRELEDAIDRLIVECDRKIGRALKRLEDDDAKAAIAISVSE 120
           SLQLRKEYEEAKAKGV NYDR+LED IDRLIVECDRKI RALKRLED+DAKAAIAISVSE
Sbjct: 61  SLQLRKEYEEAKAKGVHNYDRDLEDVIDRLIVECDRKIARALKRLEDEDAKAAIAISVSE 120

Query: 121 VTQTPEVLELSKQIKEKLKETDQYDYEGKTDLKIRALEVVEELRTKRADKQSMLLLDAFN 180
           VTQTPEVLELSKQIKEKLKE DQ+D EGKTD KIRALEVVEELRTKRADKQSMLLLDAFN
Sbjct: 121 VTQTPEVLELSKQIKEKLKEADQFDLEGKTDSKIRALEVVEELRTKRADKQSMLLLDAFN 180

Query: 181 KDRASLPQPLPNPPPLAPLPIPAPDARTQEMINEKLKKAEDLGEQGMVDEAQKALEEAEA 240
           KDRASLPQPLPNPPPLAPLP+ APD RTQEMINEKLKKAEDLGEQGM+DEAQKALEEAEA
Sbjct: 181 KDRASLPQPLPNPPPLAPLPVLAPDPRTQEMINEKLKKAEDLGEQGMIDEAQKALEEAEA 240

Query: 241 LKKLPARQEPTLDSSKYTAADVRITDQKLRVCDICGAFLSVYDSDRRLADHFGGKLHLGY 300
           LKKL  RQEP LDSSKYTAADVRITDQKLRVCDICGAFLSVYDSDRRLADHFGGKLHLGY
Sbjct: 241 LKKLAPRQEPVLDSSKYTAADVRITDQKLRVCDICGAFLSVYDSDRRLADHFGGKLHLGY 300

Query: 301 MQIRDKLAELQEERNKKHK-DRC-DDRRSKERSKDQDREPSRDREKEASRDRDRGDSRDR 358
           MQIR+KLAELQEERNK  K DR  +DRRSKERS+D DRE S          +DR DSR+R
Sbjct: 301 MQIREKLAELQEERNKSRKVDRHENDRRSKERSRDHDREAS----------KDRADSRER 350

Query: 359 GRDYDRSSRDRDRYYDRDRRYDRERDRDSDRHRSYDSRSHRRSRSRSK------ERSRDY 412
           GRD+DR SRDRDRY+DRDR +DRERDRDSDR R+YDSRS RRSRSRS       +RSRDY
Sbjct: 351 GRDHDRRSRDRDRYHDRDRGHDRERDRDSDRPRNYDSRSRRRSRSRSGERSRDYDRSRDY 410

Query: 413 DRHRRHDRY 421
           DRHRR+DRY
Sbjct: 411 DRHRRYDRY 419

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147792792|emb|CAN71034.1| hypothetical protein VITISV_000356 [Vitis vinifera]

 Score =  579 bits (1492), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 368/429 (85%), Positives = 388/429 (90%), Gaps = 18/429 (4%)

Query: 1   MDAMRKQLDVLMGANRNGDVREVNRKYYDRDVCRLYLAGLCPHELFQLTKMDMGPCPKVH 60
           MDA+RKQLDVLMGANRNGDVREVNRKYYDRDVCRL+L GLCPHELFQLTKMDMGPCPKVH
Sbjct: 1   MDAIRKQLDVLMGANRNGDVREVNRKYYDRDVCRLFLVGLCPHELFQLTKMDMGPCPKVH 60

Query: 61  SLQLRKEYEEAKAKGVDNYDRELEDAIDRLIVECDRKIGRALKRLEDDDAKAAIAISVSE 120
           SLQLRKEYEEAKAKGV NYDR+LED IDRLIVECDRKI RALKRLED+DAKAAIAISVSE
Sbjct: 61  SLQLRKEYEEAKAKGVHNYDRDLEDVIDRLIVECDRKIARALKRLEDEDAKAAIAISVSE 120

Query: 121 VTQTPEVLELSKQIKEKLKETDQYDYEGKTDLKIRALEVVEELRTKRADKQSMLLLDAFN 180
           VTQT EVLELSKQIKEKLKE DQ+D EGKTD KIRALEVVEELRTKRADKQSMLLLDAFN
Sbjct: 121 VTQTAEVLELSKQIKEKLKEADQFDLEGKTDSKIRALEVVEELRTKRADKQSMLLLDAFN 180

Query: 181 KDRASLPQPLPNPPPLAPLPIPAPDARTQEMINEKLKKAEDLGEQGMVDEAQKALEEAEA 240
           KDRASLPQPLPNPPPLAPLP+ +PD RTQEMINEKLKKAEDLGEQGM+DEAQKALEEAEA
Sbjct: 181 KDRASLPQPLPNPPPLAPLPVLSPDPRTQEMINEKLKKAEDLGEQGMIDEAQKALEEAEA 240

Query: 241 LKKLPARQEPTLDSSKYTAADVRITDQKLRVCDICGAFLSVYDSDRRLADHFGGKLHLGY 300
           LKKL  RQEP LDSSKYTAADVRITDQKLRVCDICGAFLSVYDSDRRLADHFGGKLHLGY
Sbjct: 241 LKKLAPRQEPVLDSSKYTAADVRITDQKLRVCDICGAFLSVYDSDRRLADHFGGKLHLGY 300

Query: 301 MQIRDKLAELQEERNKKHK-DRC-DDRRSKERSKDQDREPSRDREKEASRDRDRGDSRDR 358
           MQIR+KLAELQEERNK  K DR  +DRRSKERS+D+DRE S          +DR DSR+R
Sbjct: 301 MQIREKLAELQEERNKSRKVDRHENDRRSKERSRDRDREAS----------KDRADSRER 350

Query: 359 GRDYDRSSRDRDRYYDRDRRYDRERDRDSDRHRSYDSRSHRRSRSRSK------ERSRDY 412
           GRD+DR SRDRDRY+DRDR +DRERDRDSDR R+YDSRS RRSRSRS       +RSRDY
Sbjct: 351 GRDHDRRSRDRDRYHDRDRGHDRERDRDSDRPRNYDSRSRRRSRSRSGERSRDYDRSRDY 410

Query: 413 DRHRRHDRY 421
           DRHRR+DRY
Sbjct: 411 DRHRRYDRY 419

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449442277|ref|XP_004138908.1| PREDICTED: putative RNA-binding protein Luc7-like 2-like [Cucumis sativus] gi|449506274|ref|XP_004162701.1| PREDICTED: putative RNA-binding protein Luc7-like 2-like [Cucumis sativus]

 Score =  561 bits (1447), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 338/422 (80%), Positives = 365/422 (86%), Gaps = 10/422 (2%)

Query: 1   MDAMRKQLDVLMGANRNGDVREVNRKYYDRDVCRLYLAGLCPHELFQLTKMDMGPCPKVH 60
           MDA R+QLD LMGANRNGDV+EV+RKYYDRDVCR++L GLCPHELFQLTKMDMGPCPK+H
Sbjct: 1   MDAFRRQLDQLMGANRNGDVQEVSRKYYDRDVCRMFLVGLCPHELFQLTKMDMGPCPKIH 60

Query: 61  SLQLRKEYEEAKAKGVDNYDRELEDAIDRLIVECDRKIGRALKRLEDDDAKAAIAISVSE 120
           SLQLRKEYEE KAKG+ NYDR+LED IDRLI+ECDRKI RALKRLE++DAKAAIAISVSE
Sbjct: 61  SLQLRKEYEEGKAKGIHNYDRDLEDVIDRLIIECDRKIARALKRLEEEDAKAAIAISVSE 120

Query: 121 VTQTPEVLELSKQIKEKLKETDQYDYEGKTDLKIRALEVVEELRTKRADKQSMLLLDAFN 180
           VTQ PEVLELSK+IKEKLKE DQYD EGKTDLKIR LEVVEELRT+RADKQSMLLLDAFN
Sbjct: 121 VTQIPEVLELSKEIKEKLKEADQYDLEGKTDLKIRVLEVVEELRTRRADKQSMLLLDAFN 180

Query: 181 KDRASLPQPLPNPPPLAPLPIPAPDARTQEMINEKLKKAEDLGEQGMVDEAQKALEEAEA 240
           KDRASLPQPLPNPPPLAPLP+ APD RTQEMINEKLKKAE+LGEQGM+DEAQKALEEAEA
Sbjct: 181 KDRASLPQPLPNPPPLAPLPVVAPDPRTQEMINEKLKKAEELGEQGMIDEAQKALEEAEA 240

Query: 241 LKKLPARQEPTLDSSKYTAADVRITDQKLRVCDICGAFLSVYDSDRRLADHFGGKLHLGY 300
           LKKLPARQEP +DSSKYTAADVRITDQKLRVCDICGAFLSVYDSDRRLADHFGGKLHLGY
Sbjct: 241 LKKLPARQEPVVDSSKYTAADVRITDQKLRVCDICGAFLSVYDSDRRLADHFGGKLHLGY 300

Query: 301 MQIRDKLAELQEERNKKHK-DRCDDRRSKERSKDQDREPSRDREKEASRDRDRGDSRDRG 359
           MQIR+KLAELQEERNK  K DR DDRRSKERS++ DREPSRDR++  SRDR R + R   
Sbjct: 301 MQIREKLAELQEERNKSRKVDRHDDRRSKERSREPDREPSRDRDRGDSRDRGRDNDRRSR 360

Query: 360 RDYDRSSRDRDRYYDRDRRYDRERDRDSDRHRSYDSRSHRRSRSRSKERSRDYDRHRRHD 419
                  RDR           RER+RD DR     SR   RSRS  +ER+RDYDRH+R D
Sbjct: 361 DRDRYHDRDRYD---------RERNRDPDRSYDSRSRRRSRSRSTDRERARDYDRHKRRD 411

Query: 420 RY 421
           RY
Sbjct: 412 RY 413

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18418301|ref|NP_568347.1| LUC7 related protein [Arabidopsis thaliana] gi|15450599|gb|AAK96571.1| AT5g17440/K3M16_10 [Arabidopsis thaliana] gi|17380624|gb|AAL36075.1| AT5g17440/K3M16_10 [Arabidopsis thaliana] gi|332005043|gb|AED92426.1| LUC7 related protein [Arabidopsis thaliana]

 Score =  560 bits (1443), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 276/322 (85%), Positives = 298/322 (92%), Gaps = 2/322 (0%)

Query: 1   MDAMRKQLDVLMGANRNGDVREVNRKYYDRDVCRLYLAGLCPHELFQLTKMDMGPCPKVH 60
           MDAMRKQLDVLMGANRNGDV EVNRKYYDRDVCRLYL+GLCPHELFQLTKMDMGPCPKVH
Sbjct: 1   MDAMRKQLDVLMGANRNGDVTEVNRKYYDRDVCRLYLSGLCPHELFQLTKMDMGPCPKVH 60

Query: 61  SLQLRKEYEEAKAKGVDNYDRELEDAIDRLIVECDRKIGRALKRLEDDDAKAAIAISVSE 120
           SLQLRKEY++AKAKGVDNYDRELEDAIDRLIVECDRKIGRAL RL+++DAKAAIAISV+E
Sbjct: 61  SLQLRKEYKDAKAKGVDNYDRELEDAIDRLIVECDRKIGRALNRLQEEDAKAAIAISVTE 120

Query: 121 VTQTPEVLELSKQIKEKLKETDQYDYEGKTDLKIRALEVVEELRTKRADKQSMLLLDAFN 180
            TQ+PE+LELSKQIKEK+KE D +D EGKTDLKIRALE+VEE+RTKRAD Q++LLLDAFN
Sbjct: 121 FTQSPEILELSKQIKEKMKEADLHDLEGKTDLKIRALELVEEMRTKRADLQAVLLLDAFN 180

Query: 181 KDRASLPQPLPNPPPLAPLPIPAPDARTQEMINEKLKKAEDLGEQGMVDEAQKALEEAEA 240
           KDR SL Q +P   P A L  P PD RTQEMINEKLKKAE+LGEQGMVDEAQKALEEAEA
Sbjct: 181 KDRTSLQQAVPAQQPAATL--PPPDPRTQEMINEKLKKAEELGEQGMVDEAQKALEEAEA 238

Query: 241 LKKLPARQEPTLDSSKYTAADVRITDQKLRVCDICGAFLSVYDSDRRLADHFGGKLHLGY 300
           LKKL ARQEP +DS+KYTAADVRITDQKLR+CDICGAFLSVYDSDRRLADHFGGKLHLGY
Sbjct: 239 LKKLTARQEPVVDSTKYTAADVRITDQKLRLCDICGAFLSVYDSDRRLADHFGGKLHLGY 298

Query: 301 MQIRDKLAELQEERNKKHKDRC 322
           M IRDKLAELQEE+NK HK+R 
Sbjct: 299 MLIRDKLAELQEEKNKVHKERV 320

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30678827|ref|NP_566203.2| LUC7 related protein [Arabidopsis thaliana] gi|332640410|gb|AEE73931.1| LUC7 related protein [Arabidopsis thaliana]

 Score =  559 bits (1441), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 314/421 (74%), Positives = 353/421 (83%), Gaps = 19/421 (4%)

Query: 1   MDAMRKQLDVLMGANRNGDVREVNRKYYDRDVCRLYLAGLCPHELFQLTKMDMGPCPKVH 60
           MDA+RKQLDVLMGANRNGDV+EVNRKYYDRDVCRLYL+GLCPH+LFQLTKMDMGPCPKVH
Sbjct: 1   MDAIRKQLDVLMGANRNGDVQEVNRKYYDRDVCRLYLSGLCPHDLFQLTKMDMGPCPKVH 60

Query: 61  SLQLRKEYEEAKAKGVDNYDRELEDAIDRLIVECDRKIGRALKRLEDDDAKAAIAISVSE 120
           SLQLRKEY EA+AKGVDNYDRELEDAIDRLIVECDRKIGRALKRL+++DAKAAIAISVSE
Sbjct: 61  SLQLRKEYREARAKGVDNYDRELEDAIDRLIVECDRKIGRALKRLQEEDAKAAIAISVSE 120

Query: 121 VTQTPEVLELSKQIKEKLKETDQYDYEGKTDLKIRALEVVEELRTKRADKQSMLLLDAFN 180
           VTQ+PE+LELS++IKEK+KE D +D EGK DLKIRALE+VEE+RTKRAD+Q++LLL+AFN
Sbjct: 121 VTQSPEILELSEKIKEKMKEADIHDLEGKMDLKIRALELVEEMRTKRADQQAVLLLEAFN 180

Query: 181 KDRASLPQPLPNPPPLAPLPIPAPDARTQEMINEKLKKAEDLGEQGMVDEAQKALEEAEA 240
           KDRASLPQP+P  PP + L  P PD RTQEMINEKLKKAEDLGEQGMVDEAQKALEEAEA
Sbjct: 181 KDRASLPQPVPAQPPSSEL--PPPDPRTQEMINEKLKKAEDLGEQGMVDEAQKALEEAEA 238

Query: 241 LKKLPARQEPTLDSSKYTAADVRITDQKLRVCDICGAFLSVYDSDRRLADHFGGKLHLGY 300
           LKKL  R+EP  DS+KYTA DVRITDQKLR+CDICGAFLSVYDSDRRLADHFGGKLHLGY
Sbjct: 239 LKKLTVRREPPADSTKYTAVDVRITDQKLRLCDICGAFLSVYDSDRRLADHFGGKLHLGY 298

Query: 301 MQIRDKLAELQEERNKKHKDRCDDRRSKERSKDQDREPSRDREKEASRDRDRGDSRDRGR 360
           M +RDKL EL +E+    K+R  +R SKE      RE S+DREKE          ++  R
Sbjct: 299 MLVRDKLTELLDEKANIRKERSKERNSKE------RESSKDREKE----------QETSR 342

Query: 361 DYDRSSRDRDRYYDRDRRYDRERDRDSDRHRSYDSRSHRRSRSRSKERSRDYDRHRRHDR 420
           ++ R    R R  DR    DRE+DRD DR  S  SR   RSRSRS++R RDYDRHRRH+R
Sbjct: 343 EHRRDYDRRSRDRDRHHDRDREQDRDYDRSHS-RSRRRSRSRSRSRDRPRDYDRHRRHNR 401

Query: 421 Y 421
           Y
Sbjct: 402 Y 402

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|119935927|gb|ABM06036.1| At3g03340 [Arabidopsis thaliana]

 Score =  559 bits (1441), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 313/421 (74%), Positives = 352/421 (83%), Gaps = 19/421 (4%)

Query: 1   MDAMRKQLDVLMGANRNGDVREVNRKYYDRDVCRLYLAGLCPHELFQLTKMDMGPCPKVH 60
           MDA+RKQLDVLMGANRNGDV+EVNRKYYDRDVCRLYL+GLCPH+LFQLTKMDMGPCPKVH
Sbjct: 1   MDAIRKQLDVLMGANRNGDVQEVNRKYYDRDVCRLYLSGLCPHDLFQLTKMDMGPCPKVH 60

Query: 61  SLQLRKEYEEAKAKGVDNYDRELEDAIDRLIVECDRKIGRALKRLEDDDAKAAIAISVSE 120
           SLQLRKEY EA+AKGVDNYDRELEDAIDRLIVECDRKIGRALKRL+++DAKAAIAISVSE
Sbjct: 61  SLQLRKEYREARAKGVDNYDRELEDAIDRLIVECDRKIGRALKRLQEEDAKAAIAISVSE 120

Query: 121 VTQTPEVLELSKQIKEKLKETDQYDYEGKTDLKIRALEVVEELRTKRADKQSMLLLDAFN 180
           VTQ+PE+LELS++IKEK+KE D +D EGK DLKIRALE+VEE+RTKRAD+Q++LLL+AFN
Sbjct: 121 VTQSPEILELSEKIKEKMKEADIHDLEGKMDLKIRALELVEEMRTKRADQQAVLLLEAFN 180

Query: 181 KDRASLPQPLPNPPPLAPLPIPAPDARTQEMINEKLKKAEDLGEQGMVDEAQKALEEAEA 240
           KDRASLPQP+P  PP + L  P PD RTQEMINEKLKKAEDLGEQGMVDEAQKALEEAEA
Sbjct: 181 KDRASLPQPVPAQPPSSEL--PPPDPRTQEMINEKLKKAEDLGEQGMVDEAQKALEEAEA 238

Query: 241 LKKLPARQEPTLDSSKYTAADVRITDQKLRVCDICGAFLSVYDSDRRLADHFGGKLHLGY 300
           LKKL  R+EP  DS+KYTA DVRITDQKLR+CDICGAFLSVYDSDRRLADHFGGKLHLGY
Sbjct: 239 LKKLTVRREPPADSTKYTAVDVRITDQKLRLCDICGAFLSVYDSDRRLADHFGGKLHLGY 298

Query: 301 MQIRDKLAELQEERNKKHKDRCDDRRSKERSKDQDREPSRDREKEASRDRDRGDSRDRGR 360
           M +RDKL EL +E+    K+R  +R SKE      RE S+DREKE          ++  R
Sbjct: 299 MLVRDKLTELLDEKANIRKERSKERNSKE------RESSKDREKE----------QETSR 342

Query: 361 DYDRSSRDRDRYYDRDRRYDRERDRDSDRHRSYDSRSHRRSRSRSKERSRDYDRHRRHDR 420
           ++ R    R R  DR    DRE+DRD DR  S  SR   RSRS S++R RDYDRHRRH+R
Sbjct: 343 EHRRDYDRRSRDRDRHHDRDREQDRDYDRSHS-RSRRRSRSRSSSRDRPRDYDRHRRHNR 401

Query: 421 Y 421
           Y
Sbjct: 402 Y 402

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255547526|ref|XP_002514820.1| ATP binding protein, putative [Ricinus communis] gi|223545871|gb|EEF47374.1| ATP binding protein, putative [Ricinus communis]

 Score =  559 bits (1441), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 309/352 (87%), Positives = 330/352 (93%), Gaps = 1/352 (0%)

Query: 1   MDAMRKQLDVLMGANRNGDVREVNRKYYDRDVCRLYLAGLCPHELFQLTKMDMGPCPKVH 60
           MDAMRKQLDVLMGANRNGDVREVNRKYYDRDVCR+YL GLCPHELFQLTKMDMGPCPKVH
Sbjct: 1   MDAMRKQLDVLMGANRNGDVREVNRKYYDRDVCRMYLVGLCPHELFQLTKMDMGPCPKVH 60

Query: 61  SLQLRKEYEEAKAKGVDNYDRELEDAIDRLIVECDRKIGRALKRLEDDDAKAAIAISVSE 120
           SLQLRKEYEEA+AKG DNYDRELED IDRLIVECD+KI RALKRLE +DAKAAIAISVSE
Sbjct: 61  SLQLRKEYEEARAKGTDNYDRELEDVIDRLIVECDKKISRALKRLEAEDAKAAIAISVSE 120

Query: 121 VTQTPEVLELSKQIKEKLKETDQYDYEGKTDLKIRALEVVEELRTKRADKQSMLLLDAFN 180
           VTQ PE++ELSKQIKEKLKE D++D EGKTD KI+ALE VE+LRT+RA+KQS LLL+AFN
Sbjct: 121 VTQNPEIIELSKQIKEKLKEADKHDLEGKTDFKIQALEEVEKLRTERAEKQSALLLEAFN 180

Query: 181 KDRASLPQPLPNPPPLAPLPIPAPDARTQEMINEKLKKAEDLGEQGMVDEAQKALEEAEA 240
           KDRASLPQPLPNPPPLAPLP+PAPD RTQEMINEKLKKAEDLGEQGMVDEAQKALEEAEA
Sbjct: 181 KDRASLPQPLPNPPPLAPLPVPAPDPRTQEMINEKLKKAEDLGEQGMVDEAQKALEEAEA 240

Query: 241 LKKLPARQEPTLDSSKYTAADVRITDQKLRVCDICGAFLSVYDSDRRLADHFGGKLHLGY 300
           LKKLPARQ+P LDSSKYTAADVRITDQKLRVCDICGAFLSVYDSDRRLADHFGGKLHLGY
Sbjct: 241 LKKLPARQDPALDSSKYTAADVRITDQKLRVCDICGAFLSVYDSDRRLADHFGGKLHLGY 300

Query: 301 MQIRDKLAELQEERNK-KHKDRCDDRRSKERSKDQDREPSRDREKEASRDRD 351
           MQIR+KL ELQEERNK +  DR DDRRSKERSKD DRE SRDR++  SRD++
Sbjct: 301 MQIREKLTELQEERNKLRRGDRHDDRRSKERSKDHDRESSRDRDRAGSRDQE 352

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	421
TAIR|locus:2157497	404	AT5G17440 "AT5G17440" [Arabido	0.805	0.839	0.775	2.2e-137
TAIR|locus:2099674	402	UNE6 "unfertilized embryo sac	0.814	0.853	0.727	5.2e-134
POMBASE|SPCC16A11.13	264	usp106 "U1 snRNP-associated pr	0.315	0.503	0.340	2.1e-34
DICTYBASE|DDB_G0278799	360	crop "Luc7 family protein" [Di	0.382	0.447	0.351	1.1e-29
FB|FBgn0029887	438	CG3198 [Drosophila melanogaste	0.802	0.771	0.275	2.1e-29
ZFIN|ZDB-GENE-040625-111	364	luc7l "LUC7-like (S. cerevisia	0.313	0.362	0.422	2.3e-23
CGD|CAL0002241	240	EXM2 [Candida albicans (taxid:	0.175	0.308	0.445	1.1e-27
UNIPROTKB|F1MMH3	371	LUC7L "Uncharacterized protein	0.313	0.355	0.412	1.5e-21
UNIPROTKB|E2R0S7	371	LUC7L "Uncharacterized protein	0.313	0.355	0.412	1.5e-21
UNIPROTKB|Q9NQ29	371	LUC7L "Putative RNA-binding pr	0.313	0.355	0.412	1.5e-21

TAIR|locus:2157497 AT5G17440 "AT5G17440" [Arabidopsis thaliana (taxid:3702)]

 Score = 1345 (478.5 bits), Expect = 2.2e-137, P = 2.2e-137
 Identities = 266/343 (77%), Positives = 293/343 (85%)

Query:     1 MDAMRKQLDVLMGANRNGDVREVNRKYYDRDVCRLYLAGLCPHELFQLTKMDMGPCPKVH 60
             MDAMRKQLDVLMGANRNGDV EVNRKYYDRDVCRLYL+GLCPHELFQLTKMDMGPCPKVH
Sbjct:     1 MDAMRKQLDVLMGANRNGDVTEVNRKYYDRDVCRLYLSGLCPHELFQLTKMDMGPCPKVH 60

Query:    61 SLQLRKEYEEAKAKGVDNYDRELEDAIDRLIVECDRKIGRALKRLEDDDAKAAIAISVSE 120
             SLQLRKEY++AKAKGVDNYDRELEDAIDRLIVECDRKIGRAL RL+++DAKAAIAISV+E
Sbjct:    61 SLQLRKEYKDAKAKGVDNYDRELEDAIDRLIVECDRKIGRALNRLQEEDAKAAIAISVTE 120

Query:   121 VTQTPEVLELSKQIKEKLKETDQYDYEGKTDLKIRALEVVEELRTKRADKQSMLLLDAFN 180
              TQ+PE+LELSKQIKEK+KE D +D EGKTDLKIRALE+VEE+RTKRAD Q++LLLDAFN
Sbjct:   121 FTQSPEILELSKQIKEKMKEADLHDLEGKTDLKIRALELVEEMRTKRADLQAVLLLDAFN 180

Query:   181 KDRXXXXXXXXXXXXXXXXXXXXXXXRTQEMINEKLKKAEDLGEQGMVDEAQXXXXXXXX 240
             KDR                       RTQEMINEKLKKAE+LGEQGMVDEAQ        
Sbjct:   181 KDRTSLQQAVPAQQPAATLPPPDP--RTQEMINEKLKKAEELGEQGMVDEAQKALEEAEA 238

Query:   241 XXXXPARQEPTLDSSKYTAADVRITDQKLRVCDICGAFLSVYDSDRRLADHFGGKLHLGY 300
                  ARQEP +DS+KYTAADVRITDQKLR+CDICGAFLSVYDSDRRLADHFGGKLHLGY
Sbjct:   239 LKKLTARQEPVVDSTKYTAADVRITDQKLRLCDICGAFLSVYDSDRRLADHFGGKLHLGY 298

Query:   301 MQIRDKLAELQEERNKKHKDRCDDRRSKERSKDQDREPSRDRE 343
             M IRDKLAELQEE+NK HK+R ++RRSKERS++  RE S+DR+
Sbjct:   299 MLIRDKLAELQEEKNKVHKERVEERRSKERSRE--RESSKDRD 339

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005829 "cytosol" evidence=RCA

TAIR|locus:2099674 UNE6 "unfertilized embryo sac 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 1275 (453.9 bits), Expect = 5.2e-134, Sum P(2) = 5.2e-134
 Identities = 251/345 (72%), Positives = 283/345 (82%)

Query:     1 MDAMRKQLDVLMGANRNGDVREVNRKYYDRDVCRLYLAGLCPHELFQLTKMDMGPCPKVH 60
             MDA+RKQLDVLMGANRNGDV+EVNRKYYDRDVCRLYL+GLCPH+LFQLTKMDMGPCPKVH
Sbjct:     1 MDAIRKQLDVLMGANRNGDVQEVNRKYYDRDVCRLYLSGLCPHDLFQLTKMDMGPCPKVH 60

Query:    61 SLQLRKEYEEAKAKGVDNYDRELEDAIDRLIVECDRKIGRALKRLEDDDAKAAIAISVSE 120
             SLQLRKEY EA+AKGVDNYDRELEDAIDRLIVECDRKIGRALKRL+++DAKAAIAISVSE
Sbjct:    61 SLQLRKEYREARAKGVDNYDRELEDAIDRLIVECDRKIGRALKRLQEEDAKAAIAISVSE 120

Query:   121 VTQTPEVLELSKQIKEKLKETDQYDYEGKTDLKIRALEVVEELRTKRADKQSMLLLDAFN 180
             VTQ+PE+LELS++IKEK+KE D +D EGK DLKIRALE+VEE+RTKRAD+Q++LLL+AFN
Sbjct:   121 VTQSPEILELSEKIKEKMKEADIHDLEGKMDLKIRALELVEEMRTKRADQQAVLLLEAFN 180

Query:   181 KDRXXXXXXXXXXXXXXXXXXXXXXXRTQEMINEKLKKAEDLGEQGMVDEAQXXXXXXXX 240
             KDR                       RTQEMINEKLKKAEDLGEQGMVDEAQ        
Sbjct:   181 KDRASLPQPVPAQPPSSELPPPDP--RTQEMINEKLKKAEDLGEQGMVDEAQKALEEAEA 238

Query:   241 XXXXPARQEPTLDSSKYTAADVRITDQKLRVCDICGAFLSVYDSDRRLADHFGGKLHLGY 300
                   R+EP  DS+KYTA DVRITDQKLR+CDICGAFLSVYDSDRRLADHFGGKLHLGY
Sbjct:   239 LKKLTVRREPPADSTKYTAVDVRITDQKLRLCDICGAFLSVYDSDRRLADHFGGKLHLGY 298

Query:   301 MQIRDKLAELQEERNKKHKDRCDDRRSKERSKDQDREPSRDREKE 345
             M +RDKL EL +E+    K+R  +R SKER   +DRE  ++  +E
Sbjct:   299 MLVRDKLTELLDEKANIRKERSKERNSKERESSKDREKEQETSRE 343

GO:0005634 "nucleus" evidence=ISM

GO:0009567 "double fertilization forming a zygote and endosperm" evidence=IMP

GO:0005829 "cytosol" evidence=IDA

GO:0008284 "positive regulation of cell proliferation" evidence=RCA

POMBASE|SPCC16A11.13 usp106 "U1 snRNP-associated protein Usp106" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 207 (77.9 bits), Expect = 2.1e-34, Sum P(2) = 2.1e-34
 Identities = 48/141 (34%), Positives = 79/141 (56%)

Query:     5 RKQLDVLMGANRNGDVREVNRKYYDRDVCRLYLAGLCPHELFQLTKMDMGPCPKVHSLQL 64
             RK ++ LMG+N +         + DR VCR +L G+CPH++F  TKMD+GPCPK+HS +L
Sbjct:     6 RKIIEQLMGSNLSNFTSRGLVHFTDRKVCRSFLCGICPHDIFTNTKMDLGPCPKIHSDKL 65

Query:    65 RKEYEEAKAKGVDNYDRE-LEDAIDRLIVECDRKI----GRALKRLEDDDAKAAIAISVS 119
             + +YE A       Y+ + LED ++R + +C+++I     R  K  E+++    +   + 
Sbjct:    66 KSDYERASYSHDYGYEWDYLED-LERHVDDCNKRIDIAEARREKTKEEEERIDELMRDII 124

Query:   120 EVTQTPEVL--ELSKQIKEKL 138
                 + EV+  E+    K KL
Sbjct:   125 HTDHSIEVIITEMEALAKRKL 145

GO:0000395 "mRNA 5'-splice site recognition" evidence=IC

GO:0003729 "mRNA binding" evidence=ISO

GO:0005634 "nucleus" evidence=IDA

GO:0005681 "spliceosomal complex" evidence=IEA

GO:0005685 "U1 snRNP" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0006376 "mRNA splice site selection" evidence=ISO

DICTYBASE|DDB_G0278799 crop "Luc7 family protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 215 (80.7 bits), Expect = 1.1e-29, Sum P(2) = 1.1e-29
 Identities = 59/168 (35%), Positives = 87/168 (51%)

Query:     1 MDAMRKQLDVLMGANRN---GDVREVNRKYYDRDVCRLYLAGLCPHELFQLTKM-DMGPC 56
             MDA+R QLD  +G +RN    D  +V   + D D+C+ +L GLCPHELF    + D+GPC
Sbjct:     1 MDAIRAQLDEFLGKDRNLLPKDRIKVENDFNDPDICKFFLCGLCPHELFTNANIRDLGPC 60

Query:    57 PKVHSLQLRKEYEEAKAKGVDNYDRELEDAIDRLIVECDRKIGRALKRLEDDDAKAAIAI 116
              K+H     K+Y+  K K   +Y+RE    I+ LI + D+KI R  +RL  +      A 
Sbjct:    61 SKLHDENCVKQYQNNKDKDKYDYEREWVRVIEGLISDNDKKIKRNKERLLQNPN--GDAN 118

Query:   117 SVSEVTQTPEVLELSKQIKEKLKETDQYDYEGKTDLKIRAL-EVVEEL 163
                   Q   + +L  +    L + +Q     + DLKI+ L +  EEL
Sbjct:   119 HHGGPIQQQSISQLDDEEGGLLPDKEQNSKITELDLKIQELLKKAEEL 166

GO:0003674 "molecular_function" evidence=ND

GO:0008380 "RNA splicing" evidence=IEA;ISS

GO:0006950 "response to stress" evidence=ISS

GO:0006915 "apoptotic process" evidence=ISS

GO:0006376 "mRNA splice site selection" evidence=ISS

GO:0005685 "U1 snRNP" evidence=ISS

GO:0005634 "nucleus" evidence=IEA;ISS

GO:0003729 "mRNA binding" evidence=ISS

GO:0006397 "mRNA processing" evidence=IEA

FB|FBgn0029887 CG3198 [Drosophila melanogaster (taxid:7227)]

 Score = 326 (119.8 bits), Expect = 2.1e-29, P = 2.1e-29
 Identities = 100/363 (27%), Positives = 168/363 (46%)

Query:     1 MDAMRKQLDVLMGANRNGDVREVNRK--YYDRDVCRLYLAGLCPHELFQLTKMDMGPCPK 58
             +DA R+ LD LMG NRN    E   K  + D + C+ Y    CPH+LF  T+ D+GPC +
Sbjct:     2 VDAARQMLDELMGRNRNLHPSEAGAKVNWEDPEFCQFYNVKFCPHDLFINTRADLGPCAR 61

Query:    59 VHSLQLRKEYEEAK-AKGVDNYDRELEDAIDRLIVECDRKIGRALKRL---EDDDAKAAI 114
             +H  + R  YE+A+ ++    Y+ E     + ++ + DRKI +  +RL   + D      
Sbjct:    62 IHDEEARHLYEDARPSQRKRQYEDEFLRFCNVMLHDVDRKIQKGKQRLLLMQRDQPNVPA 121

Query:   115 AISVSEVTQTPEVLELSKQIKEKLKETDQYDYEGKTDLKIRALEVVEELRTKRADKQSML 174
              +S  +     ++  L+ +I + L E ++    G  D     + V EEL+ ++  +Q + 
Sbjct:   122 PLSRHQ----EQLANLTARINKLLSEAEEAGIRGDVDQAQDLMTVCEELKEEK--EQLVQ 175

Query:   175 LLDAFNKDRXXXXXXXXXXXXXXXXXXXXXXXR-TQEMINEKLKKAEDLGE--QGMVDEA 231
               +A +K                           ++E     L  A  L E        A
Sbjct:   176 QYEAHHKAISSISLTKSAEDELQHHPRSSPVTNPSEESPTTPLPAATTLDEAPDAAPSSA 235

Query:   232 QXXXXXXXXX--XXXPARQEPTLDSSKYTAADVR---ITDQKLRVCDICGAFLSVYDSDR 286
             Q               A ++ T + +   AA      + +++++VC+ICGAFL V D+ +
Sbjct:   236 QAAVTTTDDAGEAAGAASEDKTSEKTDSKAAGWSHDAMPEKQMKVCEICGAFLIVGDAQQ 295

Query:   287 RLADHFGGKLHLGYMQIRDKLAEL----QEERNKKHKDRCDDRRSKERSKDQDREP-SRD 341
             R+ DH  GK HLGY ++R+ +AE+    Q+ER ++ + R + R  +  S D  REP S  
Sbjct:   296 RIEDHLMGKQHLGYSKLRNAVAEINEARQKEREQEERRRREGRVQRFHSYDSRREPRSEY 355

Query:   342 REK 344
             RE+
Sbjct:   356 RER 358

GO:0005685 "U1 snRNP" evidence=ISS

GO:0000398 "mRNA splicing, via spliceosome" evidence=ISS

ZFIN|ZDB-GENE-040625-111 luc7l "LUC7-like (S. cerevisiae)" [Danio rerio (taxid:7955)]

 Score = 269 (99.8 bits), Expect = 2.3e-23, P = 2.3e-23
 Identities = 60/142 (42%), Positives = 86/142 (60%)

Query:   210 EMINEKLKKAEDLGEQGMVDEAQXXXXXXXXXXXXPARQEPTLDSSKYTAADVRITDQKL 269
             E I + L KAE LG +G VDEAQ             +R++   +  + +        QKL
Sbjct:   131 EEIGKLLAKAEQLGAEGNVDEAQEVLQEVEKVR---SRKKDAEEEYRNSMPASSFQQQKL 187

Query:   270 RVCDICGAFLSVYDSDRRLADHFGGKLHLGYMQIRDKLAEL-------QEERNKKHKDRC 322
             RVC++C A+L ++D+DRRLADHFGGKLHLG++QIR+KL +L       QE RN++   R 
Sbjct:   188 RVCEVCSAYLGLHDNDRRLADHFGGKLHLGFIQIREKLEQLKKTVQDKQERRNQERLKRR 247

Query:   323 DDRRSKERSKDQDREPSRDREK 344
             ++R  +ER K + R  SRDR++
Sbjct:   248 EEREREERMKKRTRSRSRDRKR 269

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

CGD|CAL0002241 EXM2 [Candida albicans (taxid:5476)]

 Score = 174 (66.3 bits), Expect = 1.1e-27, Sum P(2) = 1.1e-27
 Identities = 33/74 (44%), Positives = 51/74 (68%)

Query:   247 RQEPTLDSSKYTAADVRITDQKLRVCDICGAFLSVYDSDRRLADHFGGKLHLGYMQIRDK 306
             R++ +  + + T    + + QKL+VCD CGA+LS  D+DRRLADHF GK+H+GY++IR+ 
Sbjct:   166 REKLSQQARRITENVGQTSQQKLQVCDGCGAYLSRLDNDRRLADHFVGKIHMGYLEIREN 225

Query:   307 LAELQEERNKKHKD 320
               E+Q +  K  K+
Sbjct:   226 FKEVQNKYKKMGKN 239

GO:0005685 "U1 snRNP" evidence=IEA

GO:0071004 "U2-type prespliceosome" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0006376 "mRNA splice site selection" evidence=IEA

GO:0003729 "mRNA binding" evidence=IEA

UNIPROTKB|F1MMH3 LUC7L "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 252 (93.8 bits), Expect = 1.5e-21, P = 1.5e-21
 Identities = 61/148 (41%), Positives = 85/148 (57%)

Query:   210 EMINEKLKKAEDLGEQGMVDEAQXXXXXXXXXXXXPARQEPTLDSSKYTAADVRITDQKL 269
             E I + L KAE LG +G VDE+Q                E    +S   ++      QKL
Sbjct:   131 EEIGKLLAKAEQLGAEGNVDESQKILMEVEKVRAKKKEAEEEYRNSMPASS---FQQQKL 187

Query:   270 RVCDICGAFLSVYDSDRRLADHFGGKLHLGYMQIRDKL-------AELQEERNKKHKDRC 322
             RVC++C A+L ++D+DRRLADHFGGKLHLG++QIR+KL       AE QE+RN+    R 
Sbjct:   188 RVCEVCSAYLGLHDNDRRLADHFGGKLHLGFIQIREKLDQLRKTVAEKQEKRNQDRLRRR 247

Query:   323 DDRRSKER------SKDQDREPSRDREK 344
             ++R  +ER      S+ +DR  SR R++
Sbjct:   248 EEREREERLSRRSGSRTRDRRRSRSRDR 275

GO:0050733 "RS domain binding" evidence=IEA

GO:0045843 "negative regulation of striated muscle tissue development" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|E2R0S7 LUC7L "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 252 (93.8 bits), Expect = 1.5e-21, P = 1.5e-21
 Identities = 61/148 (41%), Positives = 85/148 (57%)

Query:   210 EMINEKLKKAEDLGEQGMVDEAQXXXXXXXXXXXXPARQEPTLDSSKYTAADVRITDQKL 269
             E I + L KAE LG +G VDE+Q                E    +S   ++      QKL
Sbjct:   131 EEIGKLLAKAEQLGAEGNVDESQKILMEVEKVRAKKKEAEEEYRNSMPASS---FQQQKL 187

Query:   270 RVCDICGAFLSVYDSDRRLADHFGGKLHLGYMQIRDKL-------AELQEERNKKHKDRC 322
             RVC++C A+L ++D+DRRLADHFGGKLHLG++QIR+KL       AE QE+RN+    R 
Sbjct:   188 RVCEVCSAYLGLHDNDRRLADHFGGKLHLGFIQIREKLDQLRKTVAEKQEKRNQDRLRRR 247

Query:   323 DDRRSKER------SKDQDREPSRDREK 344
             ++R  +ER      S+ +DR  SR R++
Sbjct:   248 EEREREERLSRRSGSRTRDRRRSRSRDR 275

GO:0050733 "RS domain binding" evidence=IEA

GO:0045843 "negative regulation of striated muscle tissue development" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|Q9NQ29 LUC7L "Putative RNA-binding protein Luc7-like 1" [Homo sapiens (taxid:9606)]

 Score = 252 (93.8 bits), Expect = 1.5e-21, P = 1.5e-21
 Identities = 61/148 (41%), Positives = 85/148 (57%)

Query:   210 EMINEKLKKAEDLGEQGMVDEAQXXXXXXXXXXXXPARQEPTLDSSKYTAADVRITDQKL 269
             E I + L KAE LG +G VDE+Q                E    +S   ++      QKL
Sbjct:   131 EEIGKLLAKAEQLGAEGNVDESQKILMEVEKVRAKKKEAEEEYRNSMPASS---FQQQKL 187

Query:   270 RVCDICGAFLSVYDSDRRLADHFGGKLHLGYMQIRDKL-------AELQEERNKKHKDRC 322
             RVC++C A+L ++D+DRRLADHFGGKLHLG++QIR+KL       AE QE+RN+    R 
Sbjct:   188 RVCEVCSAYLGLHDNDRRLADHFGGKLHLGFIQIREKLDQLRKTVAEKQEKRNQDRLRRR 247

Query:   323 DDRRSKER------SKDQDREPSRDREK 344
             ++R  +ER      S+ +DR  SR R++
Sbjct:   248 EEREREERLSRRSGSRTRDRRRSRSRDR 275

GO:0005634 "nucleus" evidence=IEA

GO:0045843 "negative regulation of striated muscle tissue development" evidence=IEA

GO:0050733 "RS domain binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	421
pfam03194	252	pfam03194, LUC7, LUC7 N_terminus	6e-71
TIGR01642	509	TIGR01642, U2AF_lg, U2 snRNP auxilliary factor, la	2e-16
COG5200	258	COG5200, LUC7, U1 snRNP component, mediates U1 snR	6e-16
COG5200	258	COG5200, LUC7, U1 snRNP component, mediates U1 snR	3e-12
PRK12678	672	PRK12678, PRK12678, transcription termination fact	2e-09
TIGR01642	509	TIGR01642, U2AF_lg, U2 snRNP auxilliary factor, la	3e-09
TIGR01622	457	TIGR01622, SF-CC1, splicing factor, CC1-like famil	5e-09
TIGR01642	509	TIGR01642, U2AF_lg, U2 snRNP auxilliary factor, la	1e-08
PRK12678	672	PRK12678, PRK12678, transcription termination fact	1e-08
PRK12678	672	PRK12678, PRK12678, transcription termination fact	5e-08
PRK12678	672	PRK12678, PRK12678, transcription termination fact	8e-08
PRK12678	672	PRK12678, PRK12678, transcription termination fact	9e-08
TIGR01642	509	TIGR01642, U2AF_lg, U2 snRNP auxilliary factor, la	4e-07
PRK12678	672	PRK12678, PRK12678, transcription termination fact	5e-07
pfam08648	158	pfam08648, DUF1777, Protein of unknown function (D	2e-06
PRK12678	672	PRK12678, PRK12678, transcription termination fact	1e-05
PRK12678	672	PRK12678, PRK12678, transcription termination fact	3e-04
PRK12678	672	PRK12678, PRK12678, transcription termination fact	8e-04
pfam08648	158	pfam08648, DUF1777, Protein of unknown function (D	0.004

>gnl|CDD|217417 pfam03194, LUC7, LUC7 N_terminus

 Score =  223 bits (570), Expect = 6e-71
 Identities = 122/333 (36%), Positives = 168/333 (50%), Gaps = 84/333 (25%)

Query: 1   MDAMRKQLDVLMGANRNGDVREVNRKYYDRDVCRLYLAGLCPHELFQLTKMDMGPCPKVH 60
            DA RK LD LMG+NRNGD    + K+ DR+VCR YL G CPH+LFQ TKMD+GPCPKVH
Sbjct: 1   ADAQRKMLDQLMGSNRNGDESRQSVKFDDREVCRSYLVGFCPHDLFQNTKMDLGPCPKVH 60

Query: 61  SLQLRKEYEEA-KAKGVDNYDRELEDAIDRLIVECDRKIGRALKRLEDDDAKAAIAISVS 119
            L+L+ +YE A K++    Y+ E  + ++R + +CDRKI +A +R               
Sbjct: 61  DLKLKADYERASKSQDYFPYEVEALEILERFVHDCDRKIDKAKQR--------------- 105

Query: 120 EVTQTPEVLELSKQIKEKLKETDQYDYEGKTDLKIRALEVVEELRTKRADKQSMLLLDAF 179
                                                LE+ +E +TK A       L   
Sbjct: 106 -------------------------------------LELTQEEQTKIAADSKAEELAEL 128

Query: 180 NKDRASLPQPLPNPPPLAPLPIPAPDARTQEMINEKLKKAEDLGEQGMVDEAQKALEEAE 239
           +++                             I + L +AE LGE+G VDEA K ++E E
Sbjct: 129 DEE-----------------------------IGKLLAEAEALGEEGKVDEAMKLMKEVE 159

Query: 240 ALKKLPARQEPTLDSSKYTAADVR-ITDQKLRVCDICGAFLSVYDSDRRLADHFGGKLHL 298
            LK      E + D  +  A        QKLRVC++CGA+LS  D+DRRLADHFGGKLHL
Sbjct: 160 ELKAKKKELEDS-DEVRNAAPSSAQAQQQKLRVCEVCGAYLSRLDNDRRLADHFGGKLHL 218

Query: 299 GYMQIRDKLAELQEERNKKHKDRCDDRRSKERS 331
           GY+++R+KLAEL+E + K+ K+R +     +R 
Sbjct: 219 GYVKVREKLAELKEAKAKRRKEREERGLDGQRF 251

This family contains the N terminal region of several LUC7 protein homologues and only contains eukaryotic proteins. LUC7 has been shown to be a U1 snRNA associated protein with a role in splice site recognition. The family also contains human and mouse LUC7 like (LUC7L) proteins and human cisplatin resistance-associated overexpressed protein (CROP). Length = 252

>gnl|CDD|233503 TIGR01642, U2AF_lg, U2 snRNP auxilliary factor, large subunit, splicing factor

 Score = 80.7 bits (199), Expect = 2e-16
 Identities = 38/93 (40%), Positives = 49/93 (52%)

Query: 328 KERSKDQDREPSRDREKEASRDRDRGDSRDRGRDYDRSSRDRDRYYDRDRRYDRERDRDS 387
           ++   D++RE SR R+++ S +R R  SRDR R  DR  R R+R Y  D R    R  DS
Sbjct: 1   RDEEPDREREKSRGRDRDRSSERPRRRSRDRSRFRDRHRRSRERSYREDSRPRDRRRYDS 60

Query: 388 DRHRSYDSRSHRRSRSRSKERSRDYDRHRRHDR 420
              RS    S RRSR R + RSR      +H R
Sbjct: 61  RSPRSLRYSSVRRSRDRPRRRSRSVRSIEQHRR 93

These splicing factors consist of an N-terminal arginine-rich low complexity domain followed by three tandem RNA recognition motifs (pfam00076). The well-characterized members of this family are auxilliary components of the U2 small nuclear ribonuclearprotein splicing factor (U2AF). These proteins are closely related to the CC1-like subfamily of splicing factors (TIGR01622). Members of this subfamily are found in plants, metazoa and fungi. Length = 509

>gnl|CDD|227527 COG5200, LUC7, U1 snRNP component, mediates U1 snRNP association with cap-binding complex [RNA processing and modification]

 Score = 76.9 bits (189), Expect = 6e-16
 Identities = 42/166 (25%), Positives = 66/166 (39%), Gaps = 5/166 (3%)

Query: 2   DAMRKQLDVLMGANRNGDVREVNRKYYDRDVCRLYLAGLCPHELFQLTKMDMGPCPKVHS 61
              RK L+ LMG  R+         + D+ VC   L G CP +LF+ TK  +G CP  H 
Sbjct: 3   AEQRKVLEQLMGPERSTFDPCRPTHFTDKKVCISMLVGFCPFDLFRNTKRSLGKCPTSHE 62

Query: 62  LQLRKEYEEAKAKGVDNYDRELEDAIDRLIVECDRKIGRALKRLEDDDAKAAIAISVSEV 121
            + + EYE    +  + Y+ E    + R+++ C+  I  A                + E 
Sbjct: 63  EKYKAEYERNGRERAEEYEWEYLRLLVRIVLSCNDGIRAAGLEDRTT---PEEFGKIKEK 119

Query: 122 TQTPEVLELSKQIKEKLKETDQYDYEGKTDLKIRALEVVEELRTKR 167
            +    ++ S  I E   E D        +    A   +E LR +R
Sbjct: 120 EELFNRVDES--IGELGMEGDALAKRKLVERACSAFNELERLREER 163

Length = 258

>gnl|CDD|227527 COG5200, LUC7, U1 snRNP component, mediates U1 snRNP association with cap-binding complex [RNA processing and modification]

 Score = 66.1 bits (161), Expect = 3e-12
 Identities = 45/113 (39%), Positives = 64/113 (56%), Gaps = 2/113 (1%)

Query: 207 RTQEMINEKLKKAEDLGEQGMVDEAQKALEEAEALKKLPARQEPTLDSSKYTAADVRITD 266
           R  E I E   + + L ++ +V+ A  A  E E L++   R+E           + + T 
Sbjct: 125 RVDESIGELGMEGDALAKRKLVERACSAFNELERLRE--ERKEIKEAVYSMVENNGQGTH 182

Query: 267 QKLRVCDICGAFLSVYDSDRRLADHFGGKLHLGYMQIRDKLAELQEERNKKHK 319
           QKL+VC ICGA+LS  D+DRRLADHF GKLHLGY+ +R  LA+L ++      
Sbjct: 183 QKLQVCGICGAYLSRLDTDRRLADHFNGKLHLGYLLVRSDLADLLKKFGISRV 235

Length = 258

>gnl|CDD|237171 PRK12678, PRK12678, transcription termination factor Rho; Provisional

 Score = 58.8 bits (143), Expect = 2e-09
 Identities = 26/110 (23%), Positives = 40/110 (36%), Gaps = 2/110 (1%)

Query: 311 QEERNKKHKDRCDDRRSKERSKDQDREPSRDREKEASRDRDRGDSRDRGRDYDRSSRDRD 370
           +  R    +DR  +    ER + ++R    D   +    R++GD R+     D   R   
Sbjct: 171 ERRRRGDREDRQAEAERGERGRREERGRDGDDR-DRRDRREQGDRREERGRRDGGDRRGR 229

Query: 371 RYYDRDRRYDRERDRDSDRHRSYDSRSHRRSRSRSKERSRDYDRHRRHDR 420
           R     R    + +R+    R  D    R  R   + R RD  R RR   
Sbjct: 230 RRRRDRRDARGDDNREDRGDRDGDDGEGRGGRRGRRFRDRD-RRGRRGGD 278

Length = 672

>gnl|CDD|233503 TIGR01642, U2AF_lg, U2 snRNP auxilliary factor, large subunit, splicing factor

 Score = 58.4 bits (141), Expect = 3e-09
 Identities = 34/103 (33%), Positives = 45/103 (43%), Gaps = 9/103 (8%)

Query: 312 EERNKKHKDRCDDRRSKERSKDQDREPSRDREKEASRDRDRGDSRDRGRDYDRSSRDRDR 371
           EE +++ +      R +   + + R   R R     RDR R  SR+R    D   RDR R
Sbjct: 3   EEPDREREKSRGRDRDRSSERPRRRSRDRSR----FRDRHR-RSRERSYREDSRPRDRRR 57

Query: 372 YYDRDRRYDRE----RDRDSDRHRSYDSRSHRRSRSRSKERSR 410
           Y  R  R  R     R RD  R RS   RS  + R R ++RS 
Sbjct: 58  YDSRSPRSLRYSSVRRSRDRPRRRSRSVRSIEQHRRRLRDRSP 100

These splicing factors consist of an N-terminal arginine-rich low complexity domain followed by three tandem RNA recognition motifs (pfam00076). The well-characterized members of this family are auxilliary components of the U2 small nuclear ribonuclearprotein splicing factor (U2AF). These proteins are closely related to the CC1-like subfamily of splicing factors (TIGR01622). Members of this subfamily are found in plants, metazoa and fungi. Length = 509

>gnl|CDD|233496 TIGR01622, SF-CC1, splicing factor, CC1-like family

 Score = 57.6 bits (139), Expect = 5e-09
 Identities = 30/88 (34%), Positives = 39/88 (44%), Gaps = 13/88 (14%)

Query: 330 RSKDQDREPSRDREKEASRDRDRGDSRDRGRDYDRSSRDRDRYYDRDRRYDRERDRDSDR 389
           R +D++R   R+  + + + R+R  SR R R  DRS R RDR Y R RR  R R R    
Sbjct: 1   RYRDRERGRLRNDTRRSDKGRER--SRRRSRSRDRSRRRRDRDYYRGRRG-RSRSR---- 53

Query: 390 HRSYDSRSHRRSRSRSKERSRDYDRHRR 417
                   +R  R R     R  DR   
Sbjct: 54  ------SPNRYYRPRGDRSYRRDDRRSG 75

This model represents a subfamily of RNA splicing factors including the Pad-1 protein (N. crassa), CAPER (M. musculus) and CC1.3 (H.sapiens). These proteins are characterized by an N-terminal arginine-rich, low complexity domain followed by three (or in the case of 4 H. sapiens paralogs, two) RNA recognition domains (rrm: pfam00706). These splicing factors are closely related to the U2AF splicing factor family (TIGR01642). A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the seed. Length = 457

>gnl|CDD|233503 TIGR01642, U2AF_lg, U2 snRNP auxilliary factor, large subunit, splicing factor

 Score = 56.4 bits (136), Expect = 1e-08
 Identities = 29/113 (25%), Positives = 42/113 (37%), Gaps = 3/113 (2%)

Query: 304 RDKLAELQEERNK-KHKDRCDDR-RSKERSKDQDREPSRDREKEASRDRDRGDSRDRGRD 361
            D+  E    R++ +  +R   R R + R +D+ R       +E SR RDR     R   
Sbjct: 5   PDREREKSRGRDRDRSSERPRRRSRDRSRFRDRHRRSRERSYREDSRPRDRRRYDSRSPR 64

Query: 362 YDRSSRDRDRYYDRDRRYDRERDRDSDRHRSYDSRSHRRSRSRSKERSRDYDR 414
             R S  R R  DR RR  R         R    RS      +  ++   +D 
Sbjct: 65  SLRYSSVR-RSRDRPRRRSRSVRSIEQHRRRLRDRSPSNQWRKDDKKRSLWDI 116

These splicing factors consist of an N-terminal arginine-rich low complexity domain followed by three tandem RNA recognition motifs (pfam00076). The well-characterized members of this family are auxilliary components of the U2 small nuclear ribonuclearprotein splicing factor (U2AF). These proteins are closely related to the CC1-like subfamily of splicing factors (TIGR01622). Members of this subfamily are found in plants, metazoa and fungi. Length = 509

>gnl|CDD|237171 PRK12678, PRK12678, transcription termination factor Rho; Provisional

 Score = 56.8 bits (138), Expect = 1e-08
 Identities = 25/117 (21%), Positives = 39/117 (33%)

Query: 304 RDKLAELQEERNKKHKDRCDDRRSKERSKDQDREPSRDREKEASRDRDRGDSRDRGRDYD 363
             K  E  E+   + +    +R  +E   ++ R   R+  +  +   +RG   +RGRD D
Sbjct: 142 ARKAGEGGEQPATEARADAAERTEEEERDERRRRGDREDRQAEAERGERGRREERGRDGD 201

Query: 364 RSSRDRDRYYDRDRRYDRERDRDSDRHRSYDSRSHRRSRSRSKERSRDYDRHRRHDR 420
              R   R     R     RD    R R             ++E   D D      R
Sbjct: 202 DRDRRDRREQGDRREERGRRDGGDRRGRRRRRDRRDARGDDNREDRGDRDGDDGEGR 258

Length = 672

>gnl|CDD|237171 PRK12678, PRK12678, transcription termination factor Rho; Provisional

 Score = 54.5 bits (132), Expect = 5e-08
 Identities = 23/115 (20%), Positives = 38/115 (33%), Gaps = 6/115 (5%)

Query: 311 QEERNKKHKDRCDDRRSKERSKDQDREPSRDREKEASRDR-----DRGDSRDRGRDYDRS 365
           +    +K  +  +   ++ R+   +R    +R++   R          +  +RGR  +R 
Sbjct: 138 RRGAARKAGEGGEQPATEARADAAERTEEEERDERRRRGDREDRQAEAERGERGRREERG 197

Query: 366 SRDRDRYYDRDRRYDRERDRDSDRHRSYDSRSHRRSRSRSKERSRDYDRHRRHDR 420
               DR     R     R+    R    D R  RR R R   R  D    R    
Sbjct: 198 RDGDDRDRRDRREQGDRREERGRRDGG-DRRGRRRRRDRRDARGDDNREDRGDRD 251

Length = 672

>gnl|CDD|237171 PRK12678, PRK12678, transcription termination factor Rho; Provisional

 Score = 54.1 bits (131), Expect = 8e-08
 Identities = 23/117 (19%), Positives = 39/117 (33%), Gaps = 2/117 (1%)

Query: 304 RDKLAELQEERNKKHKDRCDDRRSKERSKDQDREPSRDREKEASRDRDRGDSRDRGRDYD 363
           RD+     +  +++ +    +R  +E       +  R   +E    R+    RD G    
Sbjct: 169 RDERRRRGDREDRQAEAERGERGRREERGRDGDDRDRRDRREQGDRREERGRRDGGDRRG 228

Query: 364 RSSRDRDRYYDRDRRYDRERDRDSDRHRSYDSRSHRRSRSRSKERSRDYDRHRRHDR 420
           R  R   R  D     +RE   D D          R  R R ++R         ++R
Sbjct: 229 RRRRRDRR--DARGDDNREDRGDRDGDDGEGRGGRRGRRFRDRDRRGRRGGDGGNER 283

Length = 672

>gnl|CDD|237171 PRK12678, PRK12678, transcription termination factor Rho; Provisional

 Score = 53.8 bits (130), Expect = 9e-08
 Identities = 24/110 (21%), Positives = 38/110 (34%), Gaps = 3/110 (2%)

Query: 311 QEERNKKHKDRCDDRRSKERSKDQDREPSRDREKEASRDRDRGDSRDRGRDYDRSSRDRD 370
           +EE   + + R D    +  ++  +R    +R ++      R       R  +R  RD  
Sbjct: 165 EEEERDERRRRGDREDRQAEAERGERGRREERGRDGDDRDRRDRREQGDRREERGRRDGG 224

Query: 371 RYYDRDRRYDRERDRDSDRHRSYDSRSHRRSRSRSKERSRDYDRHRRHDR 420
              DR  R  R   RD+    + + R  R          R   R R  DR
Sbjct: 225 ---DRRGRRRRRDRRDARGDDNREDRGDRDGDDGEGRGGRRGRRFRDRDR 271

Length = 672

>gnl|CDD|233503 TIGR01642, U2AF_lg, U2 snRNP auxilliary factor, large subunit, splicing factor

 Score = 51.8 bits (124), Expect = 4e-07
 Identities = 34/82 (41%), Positives = 39/82 (47%), Gaps = 14/82 (17%)

Query: 340 RDREKEASRDRDRGDSRDRGRDYDRSSRDRDRYYDRDRRYDRERDRDSDRHRSYDSRSHR 399
           RD E     DR+R  SR R         DRDR  +R RR  R+R R  DRHR    RS  
Sbjct: 1   RDEE----PDREREKSRGR---------DRDRSSERPRRRSRDRSRFRDRHRRSRERS-Y 46

Query: 400 RSRSRSKERSRDYDRHRRHDRY 421
           R  SR ++R R   R  R  RY
Sbjct: 47  REDSRPRDRRRYDSRSPRSLRY 68

These splicing factors consist of an N-terminal arginine-rich low complexity domain followed by three tandem RNA recognition motifs (pfam00076). The well-characterized members of this family are auxilliary components of the U2 small nuclear ribonuclearprotein splicing factor (U2AF). These proteins are closely related to the CC1-like subfamily of splicing factors (TIGR01622). Members of this subfamily are found in plants, metazoa and fungi. Length = 509

>gnl|CDD|237171 PRK12678, PRK12678, transcription termination factor Rho; Provisional

 Score = 51.4 bits (124), Expect = 5e-07
 Identities = 23/114 (20%), Positives = 37/114 (32%), Gaps = 1/114 (0%)

Query: 308 AELQEERNKKHKDRCDDRRSKERSKDQDREPSRDREKEASRDRDRGDSRDRGRDYDRSSR 367
            E  E   +    +  +   +  ++ +     R  E+E    R RGD  DR  + +R  R
Sbjct: 131 RERGEAARRGAARKAGEGGEQPATEARADAAERTEEEERDERRRRGDREDRQAEAERGER 190

Query: 368 -DRDRYYDRDRRYDRERDRDSDRHRSYDSRSHRRSRSRSKERSRDYDRHRRHDR 420
             R+         DR   R+    R    R     R   + R    D     +R
Sbjct: 191 GRREERGRDGDDRDRRDRREQGDRREERGRRDGGDRRGRRRRRDRRDARGDDNR 244

Length = 672

>gnl|CDD|219953 pfam08648, DUF1777, Protein of unknown function (DUF1777)

 Score = 47.2 bits (112), Expect = 2e-06
 Identities = 37/82 (45%), Positives = 40/82 (48%), Gaps = 5/82 (6%)

Query: 339 SRDREKEASRDRDRGDSRDRGRDYDRSSRDRDRYYDRDRRYDRERDRDSDRHRSYDSRSH 398
            R R +   R R RG SR R R   R  R R R  DR R     R R    HRS  SRS 
Sbjct: 2   GRSRSRSPRRSRRRGRSRSRDRRERRRERSRSRERDRRR-----RSRSRSPHRSRRSRSP 56

Query: 399 RRSRSRSKERSRDYDRHRRHDR 420
           RR RSRS+  SR  DR R  D+
Sbjct: 57  RRHRSRSRSPSRRRDRKRERDK 78

This is a family of eukaryotic proteins of unknown function. Some of the proteins in this family are putative nucleic acid binding proteins. Length = 158

>gnl|CDD|237171 PRK12678, PRK12678, transcription termination factor Rho; Provisional

 Score = 47.2 bits (113), Expect = 1e-05
 Identities = 25/113 (22%), Positives = 38/113 (33%), Gaps = 8/113 (7%)

Query: 308 AELQEERNKKHKDRCDDRRSKERSKDQDREPSRDREKEASRDRDRGDSRDRGRDYDRSSR 367
           A+ +E R +    R    R      +Q    +R    E + + +R + R RG   DR   
Sbjct: 125 AQARERRERGEAARRGAARKAGEGGEQPATEARADAAERTEEEERDERRRRGDREDRQ-- 182

Query: 368 DRDRYYDRDRRYDRERDRDSDRHRSYDSRSHRRSRSRSKERSRDYDRHRRHDR 420
                     R +R R  +  R      R  RR +   +E     D   R  R
Sbjct: 183 ------AEAERGERGRREERGRDGDDRDRRDRREQGDRREERGRRDGGDRRGR 229

Length = 672

>gnl|CDD|237171 PRK12678, PRK12678, transcription termination factor Rho; Provisional

 Score = 42.6 bits (101), Expect = 3e-04
 Identities = 17/92 (18%), Positives = 30/92 (32%)

Query: 329 ERSKDQDREPSRDREKEASRDRDRGDSRDRGRDYDRSSRDRDRYYDRDRRYDRERDRDSD 388
              +       R+R + A R   R       +    +  D     + + R +R R  D +
Sbjct: 120 SAPEAAQARERRERGEAARRGAARKAGEGGEQPATEARADAAERTEEEERDERRRRGDRE 179

Query: 389 RHRSYDSRSHRRSRSRSKERSRDYDRHRRHDR 420
             ++   R  R  R        D DR  R ++
Sbjct: 180 DRQAEAERGERGRREERGRDGDDRDRRDRREQ 211

Length = 672

>gnl|CDD|237171 PRK12678, PRK12678, transcription termination factor Rho; Provisional

 Score = 41.4 bits (98), Expect = 8e-04
 Identities = 23/74 (31%), Positives = 30/74 (40%)

Query: 311 QEERNKKHKDRCDDRRSKERSKDQDREPSRDREKEASRDRDRGDSRDRGRDYDRSSRDRD 370
           Q +R ++   R    R   R +   R+   D  +E   DRD  D   RG    R  RDRD
Sbjct: 211 QGDRREERGRRDGGDRRGRRRRRDRRDARGDDNREDRGDRDGDDGEGRGGRRGRRFRDRD 270

Query: 371 RYYDRDRRYDRERD 384
           R   R      ER+
Sbjct: 271 RRGRRGGDGGNERE 284

Length = 672

>gnl|CDD|219953 pfam08648, DUF1777, Protein of unknown function (DUF1777)

 Score = 37.2 bits (86), Expect = 0.004
 Identities = 30/101 (29%), Positives = 40/101 (39%), Gaps = 12/101 (11%)

Query: 326 RSKERSKDQDREPSRDREKEASRDRDRGDSRDRGRDYDRSSRDRD-----------RYYD 374
           RS+ RS  + R   R R ++  R+R R  SR R RD  R SR R            R+  
Sbjct: 3   RSRSRSPRRSRRRGRSRSRD-RRERRRERSRSRERDRRRRSRSRSPHRSRRSRSPRRHRS 61

Query: 375 RDRRYDRERDRDSDRHRSYDSRSHRRSRSRSKERSRDYDRH 415
           R R   R RDR  +R +       R  +   KE   +    
Sbjct: 62  RSRSPSRRRDRKRERDKDAREPKKRERQKLIKEEDLEGKSD 102

This is a family of eukaryotic proteins of unknown function. Some of the proteins in this family are putative nucleic acid binding proteins. Length = 158

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	421
KOG0796	319	consensus Spliceosome subunit [RNA processing and	100.0
PF03194	254	LUC7: LUC7 N_terminus; InterPro: IPR004882 This fa	100.0
COG5200	258	LUC7 U1 snRNP component, mediates U1 snRNP associa	100.0
KOG0796	319	consensus Spliceosome subunit [RNA processing and	99.83
PF03194	254	LUC7: LUC7 N_terminus; InterPro: IPR004882 This fa	99.6
KOG4676	479	consensus Splicing factor, arginine/serine-rich [R	97.73
KOG4676	479	consensus Splicing factor, arginine/serine-rich [R	97.59
COG5200	258	LUC7 U1 snRNP component, mediates U1 snRNP associa	97.45
KOG2888	453	consensus Putative RNA binding protein [General fu	96.58
KOG2888	453	consensus Putative RNA binding protein [General fu	96.5
KOG0151	877	consensus Predicted splicing regulator, contains R	96.32
KOG4368	757	consensus Predicted RNA binding protein, contains	96.22
KOG4368	757	consensus Predicted RNA binding protein, contains	95.75
KOG0835	367	consensus Cyclin L [General function prediction on	93.8
KOG2548	653	consensus SWAP mRNA splicing regulator [RNA proces	93.07
KOG1847	878	consensus mRNA splicing factor [RNA processing and	91.55
KOG0113	335	consensus U1 small nuclear ribonucleoprotein (RRM	90.9
KOG0835	367	consensus Cyclin L [General function prediction on	90.4
TIGR02302	851	aProt_lowcomp conserved hypothetical protein TIGR0	83.99
PF13779	820	DUF4175: Domain of unknown function (DUF4175)	80.18

>KOG0796 consensus Spliceosome subunit [RNA processing and modification]

Probab=100.00  E-value=3.6e-80  Score=603.85  Aligned_cols=237  Identities=49%  Similarity=0.814  Sum_probs=199.9

Q ss_pred             ChH-HHHHHHHhcCCCCCCCcccccCCCCCCCCcchhccCCCcchhhHhhhhcCCCCCccccHHHHHHHHHHhhcCccch
Q 014614            1 MDA-MRKQLDVLMGANRNGDVREVNRKYYDRDVCRLYLAGLCPHELFQLTKMDMGPCPKVHSLQLRKEYEEAKAKGVDNY   79 (421)
Q Consensus         1 md~-~R~~LDeLMG~~Rn~~~~~~~~~~~D~~VCk~~L~G~CPhdLF~nTK~DlG~C~k~Hde~lk~~YE~~~~k~~~~Y   79 (421)
                      |++ ||+|||||||++||++++.+.++|+||+||++|||||||||||+|||+|+|+||++|+++||+.|+.+++.+.++|
T Consensus         1 Msa~mR~mLdqLMGs~r~~~~~~~~v~~~D~~VC~~fLvg~CPHDlF~nTk~dlg~C~kvHd~~lk~~Ye~~~k~~~~~~   80 (319)
T KOG0796|consen    1 MSAQMRAMLDQLMGSNRDGDETRQRVKFDDPDVCKSFLVGFCPHDLFQNTKMDLGPCPKVHDEALKADYERASKERDYGY   80 (319)
T ss_pred             CchHHHHHHHHHhCCCcCCCcccCCCCCCchhHHHHHHhCCCcHHHhhhhhcccCcccchhhHHHHHHHhhchHhhhhhh
Confidence            777 9999999999999999988889999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhccccccchHHHHHHHHHHHHHhhhhcccccCCcHHHHHHHHH
Q 014614           80 DRELEDAIDRLIVECDRKIGRALKRLEDDDAKAAIAISVSEVTQTPEVLELSKQIKEKLKETDQYDYEGKTDLKIRALEV  159 (421)
Q Consensus        80 e~e~~~~l~r~I~~~drrI~r~~~rLe~~~~~~~~~~~~~e~~~~eei~~l~~~I~~ll~e~E~lg~eG~vdea~~l~e~  159 (421)
                      |.+|+.+|+++|.+|+++|++++++|..++.               +..                      +++..-.++
T Consensus        81 E~d~~~~l~~~v~d~~rri~~~kerL~e~~e---------------e~~----------------------~e~~~k~~~  123 (319)
T KOG0796|consen   81 EWDALEILERFVADVDRRIEKAKERLAETVE---------------ERS----------------------EEAARKAEK  123 (319)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh---------------hhh----------------------hHHHHHHHH
Confidence            9999999999999999999999999976411               000                      000000111


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCCCCCCCCCCCCCchhhHHHHHHHHHHHHhhhhcCChHHHHHHHHHHH
Q 014614          160 VEELRTKRADKQSMLLLDAFNKDRASLPQPLPNPPPLAPLPIPAPDARTQEMINEKLKKAEDLGEQGMVDEAQKALEEAE  239 (421)
Q Consensus       160 veeLk~ek~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~l~~aE~LGeeG~VdeAqk~~~eve  239 (421)
                      |.                                             .|+++|+.+|++||+||++|+|++||++|.+||
T Consensus       124 v~---------------------------------------------~l~e~I~~~l~~~E~LG~eG~Veeaq~~~~e~E  158 (319)
T KOG0796|consen  124 VH---------------------------------------------ELEEKIGKLLEKAEELGEEGNVEEAQKAMKEVE  158 (319)
T ss_pred             HH---------------------------------------------HHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHH
Confidence            11                                             146899999999999999999999999999999


Q ss_pred             Hhhc-cccccCCcccCCcccccccccccccchhhhcccccccccCchhhhhhhhhhhhhhcHHHHHHHHHHHHHHHhhhc
Q 014614          240 ALKK-LPARQEPTLDSSKYTAADVRITDQKLRVCDICGAFLSVYDSDRRLADHFGGKLHLGYMQIRDKLAELQEERNKKH  318 (421)
Q Consensus       240 ~lk~-~~~~~e~~~~~~~~~~~~~~~~~qkl~VCeVCGA~Ls~~D~d~Rl~dH~~GK~H~Gy~~iR~~l~eL~e~~~~~~  318 (421)
                      .|++ .+...+.   ....+.+...+++|||+||+||||||+++|+++||+|||+||||+||++||++|.+|++.+...+
T Consensus       159 ~lk~~e~e~~~~---~~~~~~~~~~~~~qkl~VCeVCGa~L~~~D~d~RlaDHf~GKlHlGy~~iR~~l~eLk~~~~~~~  235 (319)
T KOG0796|consen  159 ELKAKEKEEAEE---SYNTTMPGASAQQQKLRVCEVCGAFLSVNDADRRLADHFGGKLHLGYVLIREKLAELKKEKAKRR  235 (319)
T ss_pred             HHHHHHHHHHHH---HHccCcchhhhhhhhhhHHHhhhHHHhccchHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhHHH
Confidence            9997 2222111   11122233456899999999999999999999999999999999999999999999999998876


Q ss_pred             cccc
Q 014614          319 KDRC  322 (421)
Q Consensus       319 k~r~  322 (421)
                      +.+.
T Consensus       236 ~er~  239 (319)
T KOG0796|consen  236 KERL  239 (319)
T ss_pred             HHHH
Confidence            5543

>PF03194 LUC7: LUC7 N_terminus; InterPro: IPR004882 This family consists of several LUC7 protein homologues that are restricted to eukaryotes

Probab=100.00  E-value=2.3e-74  Score=559.51  Aligned_cols=235  Identities=50%  Similarity=0.824  Sum_probs=199.5

Q ss_pred             ChHHHHHHHHhcCCCCCCCcccccCCCCCCCCcchhccCCCcchhhHhhhhcCCCCCccccHHHHHHHHHHhhcCccc-h
Q 014614            1 MDAMRKQLDVLMGANRNGDVREVNRKYYDRDVCRLYLAGLCPHELFQLTKMDMGPCPKVHSLQLRKEYEEAKAKGVDN-Y   79 (421)
Q Consensus         1 md~~R~~LDeLMG~~Rn~~~~~~~~~~~D~~VCk~~L~G~CPhdLF~nTK~DlG~C~k~Hde~lk~~YE~~~~k~~~~-Y   79 (421)
                      ||+||+|||||||++||+++....++|+||+||+||||||||||||+|||+|||||||+|++.||++|+++++++.++ |
T Consensus         1 md~~Ra~LdeLMG~~Rn~~~~~~~~~f~D~~VCk~~L~g~CPhdLF~nTK~DLG~C~kiHd~~lk~~Ye~~~~~~~~~~Y   80 (254)
T PF03194_consen    1 MDEMRAMLDELMGSNRNGDPSKRKVHFTDPDVCKYFLVGFCPHDLFVNTKSDLGPCPKIHDEALKAEYEKASKKEKYGGY   80 (254)
T ss_pred             CHHHHHHHHHHcCCccCCCccccCCCCCCcccCHHHHhCCCcHHHHhhcccccchhhhhcCHHHHHHHHhCccccccchh
Confidence            899999999999999999988878999999999999999999999999999999999999999999999998777776 9


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhccccccchHHHHHHHHHHHHHhhhhcccccCCcHHHHHHHHH
Q 014614           80 DRELEDAIDRLIVECDRKIGRALKRLEDDDAKAAIAISVSEVTQTPEVLELSKQIKEKLKETDQYDYEGKTDLKIRALEV  159 (421)
Q Consensus        80 e~e~~~~l~r~I~~~drrI~r~~~rLe~~~~~~~~~~~~~e~~~~eei~~l~~~I~~ll~e~E~lg~eG~vdea~~l~e~  159 (421)
                      |.+|+.+|+++|.+||++|+++++||+.++...+         ..   ..  .                      ...+.
T Consensus        81 E~e~~~~L~~~i~d~drrI~~~k~RL~~~~~~~~---------~~---~~--~----------------------~~~~~  124 (254)
T PF03194_consen   81 EREFLRYLQRLIRDCDRRIERAKERLEQTQEEQA---------KE---AD--E----------------------EKAEK  124 (254)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccc---------cc---hh--h----------------------hHHHH
Confidence            9999999999999999999999999987532110         00   00  0                      00111


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCCCCCCCCCCCCCchhhHHHHHHHHHHHHhhhhcCChHHHHHHHHHHH
Q 014614          160 VEELRTKRADKQSMLLLDAFNKDRASLPQPLPNPPPLAPLPIPAPDARTQEMINEKLKKAEDLGEQGMVDEAQKALEEAE  239 (421)
Q Consensus       160 veeLk~ek~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~l~~aE~LGeeG~VdeAqk~~~eve  239 (421)
                                                                   +..|+++|+++|++||+||++|+||+|+++|++|+
T Consensus       125 ---------------------------------------------i~~l~~~I~~ll~~aE~LGeeG~VdeA~~~~~~~e  159 (254)
T PF03194_consen  125 ---------------------------------------------IDELDEKIGELLKEAEELGEEGDVDEAQKLMEEVE  159 (254)
T ss_pred             ---------------------------------------------HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence                                                         12247889999999999999999999999999999


Q ss_pred             HhhccccccCCcccCCcccc-cccccccccchhhhcccccccccCchhhhhhhhhhhhhhcHHHHHHHHHHHHHHHhh
Q 014614          240 ALKKLPARQEPTLDSSKYTA-ADVRITDQKLRVCDICGAFLSVYDSDRRLADHFGGKLHLGYMQIRDKLAELQEERNK  316 (421)
Q Consensus       240 ~lk~~~~~~e~~~~~~~~~~-~~~~~~~qkl~VCeVCGA~Ls~~D~d~Rl~dH~~GK~H~Gy~~iR~~l~eL~e~~~~  316 (421)
                      .|+.++.+++........+. ....+++|+|+||+|||||||++|+++||+|||+||||+||++||++|++|++.+.+
T Consensus       160 ~Lk~ek~~le~~~~~~~~~~~~~~~~~~qkl~VCeVCGA~Ls~~D~d~RladH~~GK~HlGy~~IR~~l~el~e~~~~  237 (254)
T PF03194_consen  160 KLKEEKEELEKELEEYRNSIENSAQSQQQKLEVCEVCGAFLSVGDNDRRLADHFGGKQHLGYAKIREKLKELKEKREE  237 (254)
T ss_pred             HHHHHHHHHHhhhhhhhhhhhhhhcccccCccchhhhhhHHhccchHHHHHHHhccchhhhHHHHHHHHHHHHHHHHH
Confidence            99998877765221111111 112357899999999999999999999999999999999999999999999999987

LUC7 has been shown to be a U1 snRNA associated protein [] with a role in splice site recognition []. The entry contains human and mouse LUC7 like (LUC7L) proteins [] and human cisplatin resistance-associated overexpressed protein (CROP) [].

>COG5200 LUC7 U1 snRNP component, mediates U1 snRNP association with cap-binding complex [RNA processing and modification]

Probab=100.00  E-value=2e-51  Score=379.09  Aligned_cols=233  Identities=33%  Similarity=0.526  Sum_probs=184.6

Q ss_pred             hHHHHHHHHhcCCCCCCCcccccCCCCCCCCcchhccCCCcchhhHhhhhcCCCCCccccHHHHHHHHHHhhcCccchHH
Q 014614            2 DAMRKQLDVLMGANRNGDVREVNRKYYDRDVCRLYLAGLCPHELFQLTKMDMGPCPKVHSLQLRKEYEEAKAKGVDNYDR   81 (421)
Q Consensus         2 d~~R~~LDeLMG~~Rn~~~~~~~~~~~D~~VCk~~L~G~CPhdLF~nTK~DlG~C~k~Hde~lk~~YE~~~~k~~~~Ye~   81 (421)
                      +.+|++|+||||+++..-.+..-.+|+|++||++||||+||||||.|||++||+||++|.+++|.+||.....+..+||-
T Consensus         3 aeqRkv~eqLmG~~~s~f~~~r~~hftd~kvC~s~Lvg~CP~dlF~nTk~slGkCp~~H~~k~K~~YeR~~~~~~~~yEw   82 (258)
T COG5200           3 AEQRKVLEQLMGPERSTFDPCRPTHFTDKKVCISMLVGFCPFDLFRNTKRSLGKCPTSHEEKYKAEYERNGRERAEEYEW   82 (258)
T ss_pred             hHHHHHHHHHhCCCcccCCCCCCccccchHHHHHHHHccCcHHHHhccccccCCCcchhHHHHHHHHhhhhhccchhhhH
Confidence            78999999999999864333445689999999999999999999999999999999999999999999998888899999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhccccccchHHHHHHHHHHHHHhhhhcccccCCcHHHHHHHHHHH
Q 014614           82 ELEDAIDRLIVECDRKIGRALKRLEDDDAKAAIAISVSEVTQTPEVLELSKQIKEKLKETDQYDYEGKTDLKIRALEVVE  161 (421)
Q Consensus        82 e~~~~l~r~I~~~drrI~r~~~rLe~~~~~~~~~~~~~e~~~~eei~~l~~~I~~ll~e~E~lg~eG~vdea~~l~e~ve  161 (421)
                      +|+..|.+++.+|..+|..+..++..++                +   ...+|++++..+.                .  
T Consensus        83 eyl~~L~r~V~~cn~~I~~a~~~~~~t~----------------e---e~~kI~e~~e~~~----------------~--  125 (258)
T COG5200          83 EYLRLLVRIVLSCNDGIRAAGLEDRTTP----------------E---EFGKIKEKEELFN----------------R--  125 (258)
T ss_pred             HHHHHHHHHHHHhcchhhhhhhhccCCH----------------H---HHHhHHHHHHHHH----------------H--
Confidence            9999999999999999998876665432                1   1235544432211                0  


Q ss_pred             HHHHHHHHHHHHHHHHhhhcccCCCCCCCCCCCCCCCCCCCCCchhhHHHHHHHHHHHHhhhhcCChHHHHHHHHHHHHh
Q 014614          162 ELRTKRADKQSMLLLDAFNKDRASLPQPLPNPPPLAPLPIPAPDARTQEMINEKLKKAEDLGEQGMVDEAQKALEEAEAL  241 (421)
Q Consensus       162 eLk~ek~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~l~~aE~LGeeG~VdeAqk~~~eve~l  241 (421)
                                                                    +.+.|.++..+.+.|...-.|+-|.+...+++.|
T Consensus       126 ----------------------------------------------~d~sIg~lg~e~dalakrk~V~~a~~~f~el~rl  159 (258)
T COG5200         126 ----------------------------------------------VDESIGELGMEGDALAKRKLVERACSAFNELERL  159 (258)
T ss_pred             ----------------------------------------------HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence                                                          1233444434444444455589999999999999


Q ss_pred             hccccccCCcccCCcccccccccccccchhhhcccccccccCchhhhhhhhhhhhhhcHHHHHHHHHHHHHHHhhhcc
Q 014614          242 KKLPARQEPTLDSSKYTAADVRITDQKLRVCDICGAFLSVYDSDRRLADHFGGKLHLGYMQIRDKLAELQEERNKKHK  319 (421)
Q Consensus       242 k~~~~~~e~~~~~~~~~~~~~~~~~qkl~VCeVCGA~Ls~~D~d~Rl~dH~~GK~H~Gy~~iR~~l~eL~e~~~~~~k  319 (421)
                      +.+.+++-+...  .|+.++.++++|||+||+|||||||..|+|+||+|||.||+|+||+.+|..|..|-+++...++
T Consensus       160 ~~~rkei~~~v~--sm~en~gq~thqklqvC~iCgayLsrlDtdrrladHf~GklHlGy~~~R~dl~~llk~~~~sr~  235 (258)
T COG5200         160 REERKEIKEAVY--SMVENNGQGTHQKLQVCGICGAYLSRLDTDRRLADHFNGKLHLGYLLVRSDLADLLKKFGISRV  235 (258)
T ss_pred             HHHHHHHHHHHH--HHhhCcchhhhhhhhhhhhhhhHHHhcchhhHHHHHhccchhhhHHHHHHHHHHHHHHhccchh
Confidence            877665533221  1333445668999999999999999999999999999999999999999999998888766663

>KOG0796 consensus Spliceosome subunit [RNA processing and modification]

Probab=99.83  E-value=7.6e-20  Score=180.03  Aligned_cols=121  Identities=23%  Similarity=0.332  Sum_probs=102.3

Q ss_pred             CCCCCCCcchhcc-------CCCcchhhHhhhhcCCCCCccccHHHHHHHHHHhhcCccchHHHHHHHHHHHHHHHHHHH
Q 014614           26 KYYDRDVCRLYLA-------GLCPHELFQLTKMDMGPCPKVHSLQLRKEYEEAKAKGVDNYDRELEDAIDRLIVECDRKI   98 (421)
Q Consensus        26 ~~~D~~VCk~~L~-------G~CPhdLF~nTK~DlG~C~k~Hde~lk~~YE~~~~k~~~~Ye~e~~~~l~r~I~~~drrI   98 (421)
                      .||..+||||.||       |+||-.+-.|.|.+|..|++-+    +..||..    ++.|+..|+.+|++.|..+..++
T Consensus        35 ~~fLvg~CPHDlF~nTk~dlg~C~kvHd~~lk~~Ye~~~k~~----~~~~E~d----~~~~l~~~v~d~~rri~~~kerL  106 (319)
T KOG0796|consen   35 KSFLVGFCPHDLFQNTKMDLGPCPKVHDEALKADYERASKER----DYGYEWD----ALEILERFVADVDRRIEKAKERL  106 (319)
T ss_pred             HHHHhCCCcHHHhhhhhcccCcccchhhHHHHHHHhhchHhh----hhhhhHH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence            6899999999999       9999666669999999997655    3456655    67899999999999999999999


Q ss_pred             HHHhhhhhhhhHHHHHHhhccccccchHHHHHHHHHHHHHhhhhcccccCCcHHHHHHHHHHHHHHH
Q 014614           99 GRALKRLEDDDAKAAIAISVSEVTQTPEVLELSKQIKEKLKETDQYDYEGKTDLKIRALEVVEELRT  165 (421)
Q Consensus        99 ~r~~~rLe~~~~~~~~~~~~~e~~~~eei~~l~~~I~~ll~e~E~lg~eG~vdea~~l~e~veeLk~  165 (421)
                      ....+.+...   ++        .++++|..|+++|+++|.+||+||.+|+|++|+.+|..||+|++
T Consensus       107 ~e~~ee~~~e---~~--------~k~~~v~~l~e~I~~~l~~~E~LG~eG~Veeaq~~~~e~E~lk~  162 (319)
T KOG0796|consen  107 AETVEERSEE---AA--------RKAEKVHELEEKIGKLLEKAEELGEEGNVEEAQKAMKEVEELKA  162 (319)
T ss_pred             HhhhhhhhhH---HH--------HHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHH
Confidence            8874433321   11        12578999999999999999999999999999999999999987

>PF03194 LUC7: LUC7 N_terminus; InterPro: IPR004882 This family consists of several LUC7 protein homologues that are restricted to eukaryotes

Probab=99.60  E-value=1.3e-15  Score=148.53  Aligned_cols=130  Identities=23%  Similarity=0.359  Sum_probs=110.3

Q ss_pred             CCCCCCCcchhcc-------CCCcchhhHhhhhcCCCCCccccHHHHHHHHHHhhcCccchHHHHHHHHHHHHHHHHHHH
Q 014614           26 KYYDRDVCRLYLA-------GLCPHELFQLTKMDMGPCPKVHSLQLRKEYEEAKAKGVDNYDRELEDAIDRLIVECDRKI   98 (421)
Q Consensus        26 ~~~D~~VCk~~L~-------G~CPhdLF~nTK~DlG~C~k~Hde~lk~~YE~~~~k~~~~Ye~e~~~~l~r~I~~~drrI   98 (421)
                      +||..+||||.||       |.||.-+-.+.|.+|...|+-.  ... +||..    ++.|+..|+.+|++.|..+..|+
T Consensus        34 k~~L~g~CPhdLF~nTK~DLG~C~kiHd~~lk~~Ye~~~~~~--~~~-~YE~e----~~~~L~~~i~d~drrI~~~k~RL  106 (254)
T PF03194_consen   34 KYFLVGFCPHDLFVNTKSDLGPCPKIHDEALKAEYEKASKKE--KYG-GYERE----FLRYLQRLIRDCDRRIERAKERL  106 (254)
T ss_pred             HHHHhCCCcHHHHhhcccccchhhhhcCHHHHHHHHhCcccc--ccc-hhHHH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence            7999999999999       9999555568999998776643  222 69877    78999999999999999999999


Q ss_pred             HHHhhhhhhhhHHHHHHhhccccccchHHHHHHHHHHHHHhhhhcccccCCcHHHHHHHHHHHHHHHHHHHHHH
Q 014614           99 GRALKRLEDDDAKAAIAISVSEVTQTPEVLELSKQIKEKLKETDQYDYEGKTDLKIRALEVVEELRTKRADKQS  172 (421)
Q Consensus        99 ~r~~~rLe~~~~~~~~~~~~~e~~~~eei~~l~~~I~~ll~e~E~lg~eG~vdea~~l~e~veeLk~ek~~~q~  172 (421)
                      +............          .+.+.|..|+++|+++|.+||+||++|+|++|+.+|.+|+.|+.++.+++.
T Consensus       107 ~~~~~~~~~~~~~----------~~~~~i~~l~~~I~~ll~~aE~LGeeG~VdeA~~~~~~~e~Lk~ek~~le~  170 (254)
T PF03194_consen  107 EQTQEEQAKEADE----------EKAEKIDELDEKIGELLKEAEELGEEGDVDEAQKLMEEVEKLKEEKEELEK  170 (254)
T ss_pred             HhCccccccchhh----------hHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence            9876554432211          125789999999999999999999999999999999999999999999865

LUC7 has been shown to be a U1 snRNA associated protein [] with a role in splice site recognition []. The entry contains human and mouse LUC7 like (LUC7L) proteins [] and human cisplatin resistance-associated overexpressed protein (CROP) [].

>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]

Probab=97.73  E-value=1.3e-05  Score=81.71  Aligned_cols=9  Identities=11%  Similarity=0.017  Sum_probs=4.9

Q ss_pred             chhhHhhhh
Q 014614           43 HELFQLTKM   51 (421)
Q Consensus        43 hdLF~nTK~   51 (421)
                      ..+++||.+
T Consensus        68 aQhLtntvf   76 (479)
T KOG4676|consen   68 AQHLTNTVF   76 (479)
T ss_pred             Hhhhcccee
Confidence            345566654

>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]

Probab=97.59  E-value=2.2e-05  Score=80.03  Aligned_cols=9  Identities=22%  Similarity=0.135  Sum_probs=4.1

Q ss_pred             hhhhcHHHH
Q 014614          295 KLHLGYMQI  303 (421)
Q Consensus       295 K~H~Gy~~i  303 (421)
                      -||.-|.-|
T Consensus       215 ~qhsr~ai~  223 (479)
T KOG4676|consen  215 RQHSRRAII  223 (479)
T ss_pred             hhhhhhhhc
Confidence            345544433

>COG5200 LUC7 U1 snRNP component, mediates U1 snRNP association with cap-binding complex [RNA processing and modification]

Probab=97.45  E-value=0.0002  Score=67.76  Aligned_cols=125  Identities=14%  Similarity=0.071  Sum_probs=82.7

Q ss_pred             CCCCCCCcchhcc-------CCCcchhhHhhhhcCCCCCccccHHHHHHHHHHhhcCccchHHHHHHHHHHHHHHHHHHH
Q 014614           26 KYYDRDVCRLYLA-------GLCPHELFQLTKMDMGPCPKVHSLQLRKEYEEAKAKGVDNYDRELEDAIDRLIVECDRKI   98 (421)
Q Consensus        26 ~~~D~~VCk~~L~-------G~CPhdLF~nTK~DlG~C~k~Hde~lk~~YE~~~~k~~~~Ye~e~~~~l~r~I~~~drrI   98 (421)
                      .++..++|||.||       |.||--+-...|.+|....+.|...    ||-.    .+.-+..++..|..-|+-.-...
T Consensus        35 ~s~Lvg~CP~dlF~nTk~slGkCp~~H~~k~K~~YeR~~~~~~~~----yEwe----yl~~L~r~V~~cn~~I~~a~~~~  106 (258)
T COG5200          35 ISMLVGFCPFDLFRNTKRSLGKCPTSHEEKYKAEYERNGRERAEE----YEWE----YLRLLVRIVLSCNDGIRAAGLED  106 (258)
T ss_pred             HHHHHccCcHHHHhccccccCCCcchhHHHHHHHHhhhhhccchh----hhHH----HHHHHHHHHHHhcchhhhhhhhc
Confidence            5779999999999       9999777678888998877777654    5543    23445566667777777655554


Q ss_pred             HHHhhhhhhhhHHHHHHhhccccccchHHHHHHHHHHHHHhhhhcccccCCcHHHHHHHHHHHHHHHHHHHH
Q 014614           99 GRALKRLEDDDAKAAIAISVSEVTQTPEVLELSKQIKEKLKETDQYDYEGKTDLKIRALEVVEELRTKRADK  170 (421)
Q Consensus        99 ~r~~~rLe~~~~~~~~~~~~~e~~~~eei~~l~~~I~~ll~e~E~lg~eG~vdea~~l~e~veeLk~ek~~~  170 (421)
                      ....+.... ..           +..+.++-+..-|..+..++++|.-.--|.-|.....+++.|++++.++
T Consensus       107 ~~t~ee~~k-I~-----------e~~e~~~~~d~sIg~lg~e~dalakrk~V~~a~~~f~el~rl~~~rkei  166 (258)
T COG5200         107 RTTPEEFGK-IK-----------EKEELFNRVDESIGELGMEGDALAKRKLVERACSAFNELERLREERKEI  166 (258)
T ss_pred             cCCHHHHHh-HH-----------HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444332221 00           1133444455566666555555555445888888888899999888776

>KOG2888 consensus Putative RNA binding protein [General function prediction only]

Probab=96.58  E-value=0.00077  Score=67.73  Aligned_cols=8  Identities=50%  Similarity=0.779  Sum_probs=3.8

Q ss_pred             HHHHHHHH
Q 014614          209 QEMINEKL  216 (421)
Q Consensus       209 ~~~I~~~l  216 (421)
                      +.+|.+.+
T Consensus       226 qkqId~~i  233 (453)
T KOG2888|consen  226 QKQIDEKI  233 (453)
T ss_pred             HHHHHHHH
Confidence            45555443

>KOG2888 consensus Putative RNA binding protein [General function prediction only]

Probab=96.50  E-value=0.0011  Score=66.74  Aligned_cols=7  Identities=43%  Similarity=0.525  Sum_probs=2.7

Q ss_pred             hHHHHHH
Q 014614          208 TQEMINE  214 (421)
Q Consensus       208 ~~~~I~~  214 (421)
                      |.++|.+
T Consensus       229 Id~~ie~  235 (453)
T KOG2888|consen  229 IDEKIEE  235 (453)
T ss_pred             HHHHHHh
Confidence            3333333

>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]

Probab=96.32  E-value=0.0028  Score=69.06  Aligned_cols=8  Identities=38%  Similarity=0.563  Sum_probs=3.1

Q ss_pred             HHHHHHHh
Q 014614            4 MRKQLDVL   11 (421)
Q Consensus         4 ~R~~LDeL   11 (421)
                      +|+-|+.|
T Consensus       432 qRdklE~l  439 (877)
T KOG0151|consen  432 QRDKLEDL  439 (877)
T ss_pred             HHHHHHHH
Confidence            33334333

>KOG4368 consensus Predicted RNA binding protein, contains SWAP, RPR and G-patch domains [General function prediction only]

Probab=96.22  E-value=0.0081  Score=64.32  Aligned_cols=15  Identities=33%  Similarity=0.696  Sum_probs=7.0

Q ss_pred             HHHHHHHHHHHHHHH
Q 014614           86 AIDRLIVECDRKIGR  100 (421)
Q Consensus        86 ~l~r~I~~~drrI~r  100 (421)
                      .|...+.-|.+|-++
T Consensus       166 lind~~~hcqrk~~~  180 (757)
T KOG4368|consen  166 LINDVLHHCQRKQAR  180 (757)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            334444445555444

>KOG4368 consensus Predicted RNA binding protein, contains SWAP, RPR and G-patch domains [General function prediction only]

Probab=95.75  E-value=0.0092  Score=63.91  Aligned_cols=10  Identities=20%  Similarity=0.341  Sum_probs=4.8

Q ss_pred             HHHHHHHHHH
Q 014614          156 ALEVVEELRT  165 (421)
Q Consensus       156 l~e~veeLk~  165 (421)
                      +|.+++.|++
T Consensus       259 ~~~~~~~~~~  268 (757)
T KOG4368|consen  259 FQQQIQTLKT  268 (757)
T ss_pred             HHHHHHHHHH
Confidence            3445555543

>KOG0835 consensus Cyclin L [General function prediction only]

Probab=93.80  E-value=0.24  Score=50.33  Aligned_cols=20  Identities=10%  Similarity=0.046  Sum_probs=14.6

Q ss_pred             cHHHHHHHHHHHHHHHhhhc
Q 014614          299 GYMQIRDKLAELQEERNKKH  318 (421)
Q Consensus       299 Gy~~iR~~l~eL~e~~~~~~  318 (421)
                      -|..|...++.++.++....
T Consensus       235 ~~~li~~~vd~~k~~~~da~  254 (367)
T KOG0835|consen  235 DETLIEAFVDRLKRKFSDAS  254 (367)
T ss_pred             CHHHHHHHHHHhhHHHHhcc
Confidence            47788888888888665443

>KOG2548 consensus SWAP mRNA splicing regulator [RNA processing and modification]

Probab=93.07  E-value=0.031  Score=59.34  Aligned_cols=12  Identities=42%  Similarity=0.518  Sum_probs=5.0

Q ss_pred             HHHHHHHHHHhh
Q 014614          231 AQKALEEAEALK  242 (421)
Q Consensus       231 Aqk~~~eve~lk  242 (421)
                      |++.+.+.+.-+
T Consensus       242 a~k~lk~~d~ek  253 (653)
T KOG2548|consen  242 AQKELKKGDPEK  253 (653)
T ss_pred             HHHHHHhcCHHH
Confidence            344444444433

>KOG1847 consensus mRNA splicing factor [RNA processing and modification]

Probab=91.55  E-value=0.26  Score=53.79  Aligned_cols=7  Identities=57%  Similarity=0.790  Sum_probs=3.9

Q ss_pred             hhhhhhc
Q 014614          293 GGKLHLG  299 (421)
Q Consensus       293 ~GK~H~G  299 (421)
                      .|+-|+-
T Consensus       692 sg~R~l~  698 (878)
T KOG1847|consen  692 SGKRHLH  698 (878)
T ss_pred             CCCCcCc
Confidence            5555554

>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]

Probab=90.90  E-value=0.26  Score=49.41  Aligned_cols=9  Identities=44%  Similarity=0.955  Sum_probs=3.4

Q ss_pred             hhhhhhhhh
Q 014614          287 RLADHFGGK  295 (421)
Q Consensus       287 Rl~dH~~GK  295 (421)
                      ||--=+||.
T Consensus       190 RLGGGLGg~  198 (335)
T KOG0113|consen  190 RLGGGLGGR  198 (335)
T ss_pred             cccCCcCCc
Confidence            333333333

>KOG0835 consensus Cyclin L [General function prediction only]

Probab=90.40  E-value=0.41  Score=48.63  Aligned_cols=34  Identities=18%  Similarity=0.093  Sum_probs=19.9

Q ss_pred             HHHHHHHHHHHHhhhhcCChHHHHHHHHHHHHhhc
Q 014614          209 QEMINEKLKKAEDLGEQGMVDEAQKALEEAEALKK  243 (421)
Q Consensus       209 ~~~I~~~l~~aE~LGeeG~VdeAqk~~~eve~lk~  243 (421)
                      .+.|.+..-....|-..-.++ .+.+...++.++.
T Consensus       215 k~eid~ic~~l~~lY~~~~p~-~~li~~~vd~~k~  248 (367)
T KOG0835|consen  215 KREIDEICYRLIPLYKRAKPD-ETLIEAFVDRLKR  248 (367)
T ss_pred             HHHHHHHHHHHHHHHHhcccC-HHHHHHHHHHhhH
Confidence            466777666666666653333 3455566676664

>TIGR02302 aProt_lowcomp conserved hypothetical protein TIGR02302

Probab=83.99  E-value=7.2  Score=44.80  Aligned_cols=33  Identities=21%  Similarity=0.410  Sum_probs=29.8

Q ss_pred             HHHHHHHHHHHHhhhhcCChHHHHHHHHHHHHh
Q 014614          209 QEMINEKLKKAEDLGEQGMVDEAQKALEEAEAL  241 (421)
Q Consensus       209 ~~~I~~~l~~aE~LGeeG~VdeAqk~~~eve~l  241 (421)
                      +..+..+|..+|+|-++|..++|+.+|+++..+
T Consensus       567 ~~dLq~Mmd~ieela~~G~~~~A~qlL~qlq~m  599 (851)
T TIGR02302       567 QQDLQNMMDQIENLARSGDRDQAKQLLSQLQQM  599 (851)
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            566888899999999999999999999998876

Members of this family are long (~850 residue) bacterial proteins from the alpha Proteobacteria. Each has 2-3 predicted transmembrane helices near the N-terminus and a long C-terminal region that includes stretches of Gln/Gly-rich low complexity sequence, predicted by TMHMM to be outside the membrane. In Bradyrhizobium japonicum, two tandem reading frames are together homologous the single members found in other species; the cutoffs scores are set low enough that the longer scores above the trusted cutoff and the shorter above the noise cutoff for this model.

>PF13779 DUF4175: Domain of unknown function (DUF4175)

Probab=80.18  E-value=12  Score=43.07  Aligned_cols=34  Identities=26%  Similarity=0.496  Sum_probs=30.5

Q ss_pred             HHHHHHHHHHHHhhhhcCChHHHHHHHHHHHHhh
Q 014614          209 QEMINEKLKKAEDLGEQGMVDEAQKALEEAEALK  242 (421)
Q Consensus       209 ~~~I~~~l~~aE~LGeeG~VdeAqk~~~eve~lk  242 (421)
                      +..+..+|..+++|-++|..++|+.+|+++..+-
T Consensus       537 ~~dL~~mmd~ie~la~~G~~~~A~q~L~qlq~mm  570 (820)
T PF13779_consen  537 QQDLQRMMDRIEELARSGRMDEARQLLEQLQQMM  570 (820)
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence            5678889999999999999999999999888763

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	421
3sqw_A	579	ATP-dependent RNA helicase MSS116, mitochondrial;	4e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-06
3pgw_S	437	U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM	8e-06
3pgw_S	437	U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM	1e-05
3pgw_S	437	U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM	2e-05
3pgw_S	437	U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM	5e-05
3pgw_S	437	U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM	1e-04
3pgw_S	437	U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM	2e-04
3pgw_S	437	U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM	3e-04
3pgw_S	437	U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM	3e-04
3pgw_S	437	U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM	7e-04
3pgw_S	437	U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM	8e-04
3pgw_S	437	U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM	8e-04
3pgw_S	437	U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM	9e-04

>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C} Length = 579

 Score = 51.4 bits (123), Expect = 4e-07
 Identities = 29/182 (15%), Positives = 58/182 (31%), Gaps = 10/182 (5%)

Query: 237 EAEALKKLPARQEPTLDSSKYTAADVRITDQKLRVCDICGAFLSVYDSDRRLADHFGGKL 296
           E      +  +++        +     +T++   + DI  + +S Y S  +       + 
Sbjct: 407 EDAKNIVIAKQEKYEPSEEIKSEVLEAVTEEPEDISDIVISLISSYRSCIK-------EY 459

Query: 297 HLGYMQIRDKLAELQEERNKKHKDRCDDRRSKERSKDQDREPSRDREKEASRDRDRGDSR 356
                +I  ++A          + +    R         R P     K     RD     
Sbjct: 460 RFSERRILPEIASTYGVLLNDPQLKIPVSRRFLDKLGLSRSP---IGKAMFEIRDYSSRD 516

Query: 357 DRGRDYDRSSRDRDRYYDRDRRYDRERDRDSDRHRSYDSRSHRRSRSRSKERSRDYDRHR 416
              + YD        +       +R ++RD D      S ++RRS SRS +++    R+ 
Sbjct: 517 GNNKSYDYDDDSEISFRGNKNYNNRSQNRDYDDEPFRRSNNNRRSFSRSNDKNNYSSRNS 576

Query: 417 RH 418
             
Sbjct: 577 NI 578

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 49.5 bits (117), Expect = 2e-06
 Identities = 53/420 (12%), Positives = 119/420 (28%), Gaps = 128/420 (30%)

Query: 2   DAMRKQLDVLMGANRNGDV-REVNRKYYDRDVCRLYLAGLCPHELFQLTKMDMGPCPKVH 60
           + +R     LM   +       +  + Y     RLY       ++F   K ++    + +
Sbjct: 85  EVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDN----QVF--AKYNV-SRLQPY 137

Query: 61  SLQLRKEYEEAK-AKGVDNYDRELEDAIDRLIVECDRKIGR---ALKRLEDDDAKAAIA- 115
            L+LR+   E + AK V              +++     G+   AL        +  +  
Sbjct: 138 -LKLRQALLELRPAKNV--------------LIDGVLGSGKTWVALDVCLSYKVQCKMDF 182

Query: 116 ----ISVSEVTQTPEVLELSKQIKEKLKETDQYDYEGKTDLKIRALEVVEELRTKRADKQ 171
               +++        VLE+ +++  ++        +  +++K+R   +  ELR     K 
Sbjct: 183 KIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKP 242

Query: 172 ---SMLLLD---------AFN---------KDRA---SLPQPLPNPPPLAPLPIPAPDAR 207
               +L+L          AFN         + +     L         L    +      
Sbjct: 243 YENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDE 302

Query: 208 TQEMINEKLK-KAEDLGEQ---------GMVDEAQKALEEAEALKKLPAR---------- 247
            + ++ + L  + +DL  +          ++         AE+++   A           
Sbjct: 303 VKSLLLKYLDCRPQDLPREVLTTNPRRLSII---------AESIRDGLATWDNWKHVNCD 353

Query: 248 ------------QEPTLDSSKYTA-----ADVRITDQKLRV--CDICGAFLSVYDSDRRL 288
                        EP      +           I    L +   D       +      +
Sbjct: 354 KLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFD------VIKSDVMVV 407

Query: 289 ADHFGGK-------------LHLGYMQIRDKLAELQEERNKKHKDRCDDRRSKERSKDQD 335
            +                  +   Y++++ KL          H+    D  +  ++ D D
Sbjct: 408 VNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYA----LHR-SIVDHYNIPKTFDSD 462

>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A* Length = 437

 Score = 46.8 bits (110), Expect = 8e-06
 Identities = 23/142 (16%), Positives = 50/142 (35%)

Query: 280 SVYDSDRRLADHFGGKLHLGYMQIRDKLAELQEERNKKHKDRCDDRRSKERSKDQDREPS 339
           S      R  D    +      + +++       R+++ + R  D+  + RS+++ ++  
Sbjct: 226 SPLPHRDRDRDRERERRERSRERDKERERRRSRSRDRRRRSRSRDKEERRRSRERSKDKD 285

Query: 340 RDREKEASRDRDRGDSRDRGRDYDRSSRDRDRYYDRDRRYDRERDRDSDRHRSYDSRSHR 399
           RDR++ +SR R+R       ++  R                 +     +           
Sbjct: 286 RDRKRRSSRSRERARRERERKEELRGGGGDMAEPSEAGDAPPDDGPPGELGPDGPDGPEE 345

Query: 400 RSRSRSKERSRDYDRHRRHDRY 421
           + R R +ER R +   R   R 
Sbjct: 346 KGRDRDRERRRSHRSERERRRD 367

>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A* Length = 437

 Score = 46.0 bits (108), Expect = 1e-05
 Identities = 32/138 (23%), Positives = 44/138 (31%)

Query: 283 DSDRRLADHFGGKLHLGYMQIRDKLAELQEERNKKHKDRCDDRRSKERSKDQDREPSRDR 342
               R              + R +    +     K + R    RSK++ +D+ R  SR R
Sbjct: 237 RERERRERSRERDKERERRRSRSRDRRRRSRSRDKEERRRSRERSKDKDRDRKRRSSRSR 296

Query: 343 EKEASRDRDRGDSRDRGRDYDRSSRDRDRYYDRDRRYDRERDRDSDRHRSYDSRSHRRSR 402
           E+       + + R  G D    S   D   D     +   D           R   R R
Sbjct: 297 ERARRERERKEELRGGGGDMAEPSEAGDAPPDDGPPGELGPDGPDGPEEKGRDRDRERRR 356

Query: 403 SRSKERSRDYDRHRRHDR 420
           S   ER R  DR R  DR
Sbjct: 357 SHRSERERRRDRDRDRDR 374

>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A* Length = 437

 Score = 45.6 bits (107), Expect = 2e-05
 Identities = 23/138 (16%), Positives = 39/138 (28%)

Query: 283 DSDRRLADHFGGKLHLGYMQIRDKLAELQEERNKKHKDRCDDRRSKERSKDQDREPSRDR 342
                L      +      + R +  + + ER +        R      +++ R   R +
Sbjct: 223 PGPSPLPHRDRDRDRERERRERSRERDKERERRRSRSRDRRRRSRSRDKEERRRSRERSK 282

Query: 343 EKEASRDRDRGDSRDRGRDYDRSSRDRDRYYDRDRRYDRERDRDSDRHRSYDSRSHRRSR 402
           +K+  R R    SR+R R       +               D   D     +        
Sbjct: 283 DKDRDRKRRSSRSRERARRERERKEELRGGGGDMAEPSEAGDAPPDDGPPGELGPDGPDG 342

Query: 403 SRSKERSRDYDRHRRHDR 420
              K R RD +R R H  
Sbjct: 343 PEEKGRDRDRERRRSHRS 360

>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A* Length = 437

 Score = 44.5 bits (104), Expect = 5e-05
 Identities = 24/109 (22%), Positives = 33/109 (30%)

Query: 312 EERNKKHKDRCDDRRSKERSKDQDREPSRDREKEASRDRDRGDSRDRGRDYDRSSRDRDR 371
               ++ +   + +           EPS   +             D     +   RDRDR
Sbjct: 293 SRSRERARRERERKEELRGGGGDMAEPSEAGDAPPDDGPPGELGPDGPDGPEEKGRDRDR 352

Query: 372 YYDRDRRYDRERDRDSDRHRSYDSRSHRRSRSRSKERSRDYDRHRRHDR 420
              R  R +RER RD DR R  D    R  R   + R          D 
Sbjct: 353 ERRRSHRSERERRRDRDRDRDRDREHKRGERGSERGRDEARGGGGGQDN 401

>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A* Length = 437

 Score = 42.9 bits (100), Expect = 1e-04
 Identities = 24/109 (22%), Positives = 36/109 (33%), Gaps = 1/109 (0%)

Query: 312 EERNKKHKDRCDDRRSKERSKDQDREPSRDREKEASRDRDRGDSRDRGRDYDRSSRDRDR 371
               ++ ++            +    P  D               ++GRD DR  R R  
Sbjct: 300 RRERERKEELRGGGGDMAEPSEAGDAPPDDGPPGELGPDGPDGPEEKGRDRDRE-RRRSH 358

Query: 372 YYDRDRRYDRERDRDSDRHRSYDSRSHRRSRSRSKERSRDYDRHRRHDR 420
             +R+RR DR+RDRD DR      R   R R  ++      D       
Sbjct: 359 RSERERRRDRDRDRDRDREHKRGERGSERGRDEARGGGGGQDNGLEGLG 407

>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A* Length = 437

 Score = 42.5 bits (99), Expect = 2e-04
 Identities = 21/111 (18%), Positives = 36/111 (32%)

Query: 311 QEERNKKHKDRCDDRRSKERSKDQDREPSRDREKEASRDRDRGDSRDRGRDYDRSSRDRD 370
           ++ + +  + R   RR +ER ++         E   + D    D        D      +
Sbjct: 286 RDRKRRSSRSRERARRERERKEELRGGGGDMAEPSEAGDAPPDDGPPGELGPDGPDGPEE 345

Query: 371 RYYDRDRRYDRERDRDSDRHRSYDSRSHRRSRSRSKERSRDYDRHRRHDRY 421
           +  DRDR   R    + +R R  D    R    +  ER  +  R       
Sbjct: 346 KGRDRDRERRRSHRSERERRRDRDRDRDRDREHKRGERGSERGRDEARGGG 396

>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A* Length = 437

 Score = 41.8 bits (97), Expect = 3e-04
 Identities = 27/160 (16%), Positives = 51/160 (31%)

Query: 262 VRITDQKLRVCDICGAFLSVYDSDRRLADHFGGKLHLGYMQIRDKLAELQEERNKKHKDR 321
            +I  +++ V    G  +  +   R      G +     + IR    +     +++    
Sbjct: 167 KKIDGRRVLVDVERGRTVKGWRPRRLGGGLGGTRRGGADVNIRHSGRDDTSRYDERPGPS 226

Query: 322 CDDRRSKERSKDQDREPSRDREKEASRDRDRGDSRDRGRDYDRSSRDRDRYYDRDRRYDR 381
               R ++R ++++R        +    R       R R   R   +R R  +R +  DR
Sbjct: 227 PLPHRDRDRDRERERRERSRERDKERERRRSRSRDRRRRSRSRDKEERRRSRERSKDKDR 286

Query: 382 ERDRDSDRHRSYDSRSHRRSRSRSKERSRDYDRHRRHDRY 421
           +R R S R R    R   R            +     D  
Sbjct: 287 DRKRRSSRSRERARRERERKEELRGGGGDMAEPSEAGDAP 326

>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A* Length = 437

 Score = 41.8 bits (97), Expect = 3e-04
 Identities = 19/118 (16%), Positives = 32/118 (27%)

Query: 304 RDKLAELQEERNKKHKDRCDDRRSKERSKDQDREPSRDREKEASRDRDRGDSRDRGRDYD 363
           +++L     +  +  +            +     P    EK   RDR+R  S    R+  
Sbjct: 306 KEELRGGGGDMAEPSEAGDAPPDDGPPGELGPDGPDGPEEKGRDRDRERRRSHRSERERR 365

Query: 364 RSSRDRDRYYDRDRRYDRERDRDSDRHRSYDSRSHRRSRSRSKERSRDYDRHRRHDRY 421
           R            +R +R  +R  D  R               +    Y      D Y
Sbjct: 366 RDRDRDRDRDREHKRGERGSERGRDEARGGGGGQDNGLEGLGNDSRDMYMESEGGDGY 423

>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A* Length = 437

 Score = 40.6 bits (94), Expect = 7e-04
 Identities = 15/111 (13%), Positives = 29/111 (26%), Gaps = 1/111 (0%)

Query: 312 EERNKKHKDRCDDRRSKERSKDQDREPSRDREKEASRDRDRGDSRDRGRDYDR-SSRDRD 370
             ++K    +    RS+ER++ +       R                  D          
Sbjct: 280 RSKDKDRDRKRRSSRSRERARRERERKEELRGGGGDMAEPSEAGDAPPDDGPPGELGPDG 339

Query: 371 RYYDRDRRYDRERDRDSDRHRSYDSRSHRRSRSRSKERSRDYDRHRRHDRY 421
                ++  DR+R+R        + R  R          +  +R     R 
Sbjct: 340 PDGPEEKGRDRDRERRRSHRSERERRRDRDRDRDRDREHKRGERGSERGRD 390

>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A* Length = 437

 Score = 40.6 bits (94), Expect = 8e-04
 Identities = 19/108 (17%), Positives = 34/108 (31%)

Query: 311 QEERNKKHKDRCDDRRSKERSKDQDREPSRDREKEASRDRDRGDSRDRGRDYDRSSRDRD 370
            +                +  +++ R+  R+R +    +R+R   RDR RD DR  +  +
Sbjct: 323 GDAPPDDGPPGELGPDGPDGPEEKGRDRDRERRRSHRSERERRRDRDRDRDRDREHKRGE 382

Query: 371 RYYDRDRRYDRERDRDSDRHRSYDSRSHRRSRSRSKERSRDYDRHRRH 418
           R  +R R   R      D          R     S+           +
Sbjct: 383 RGSERGRDEARGGGGGQDNGLEGLGNDSRDMYMESEGGDGYLAPENGY 430

>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A* Length = 437

 Score = 40.6 bits (94), Expect = 8e-04
 Identities = 24/140 (17%), Positives = 39/140 (27%), Gaps = 1/140 (0%)

Query: 282 YDSDRRLADHFGGKLHLGYMQIRDKLAELQEERNKKHKDRCDDRRSKERSKDQDREPSRD 341
            + D+                      E +  R +      D +R   RS+++ R     
Sbjct: 246 RERDKERERRRSRSRDRRRRSRSRDKEERRRSRERSKDKDRDRKRRSSRSRERARRERER 305

Query: 342 REKEASRDRDRGDSRDRGRDYDRSSRDRDRYYDRDRRYDRERDRDSDRHRSYDSRSHRRS 401
           +E+      D  +  +   D                    E+ RD DR R    RS R  
Sbjct: 306 KEELRGGGGDMAEPSEA-GDAPPDDGPPGELGPDGPDGPEEKGRDRDRERRRSHRSERER 364

Query: 402 RSRSKERSRDYDRHRRHDRY 421
           R            H+R +R 
Sbjct: 365 RRDRDRDRDRDREHKRGERG 384

>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A* Length = 437

 Score = 40.2 bits (93), Expect = 9e-04
 Identities = 23/109 (21%), Positives = 33/109 (30%), Gaps = 1/109 (0%)

Query: 312 EERNKKHKDRCDDRRSKERSKDQDREPSRDREKEASRDRDRGDSRDRGRDYDRSSRDRDR 371
           E + +      D     E       +           D      RDR R+  RS    +R
Sbjct: 304 ERKEELRGGGGDMAEPSEAGDAPPDDGPPGELGPDGPDGPEEKGRDRDRERRRS-HRSER 362

Query: 372 YYDRDRRYDRERDRDSDRHRSYDSRSHRRSRSRSKERSRDYDRHRRHDR 420
              RDR  DR+RDR+  R      R    +R     +    +      R
Sbjct: 363 ERRRDRDRDRDRDREHKRGERGSERGRDEARGGGGGQDNGLEGLGNDSR 411

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	421
3pgw_S	437	U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM	97.94
3cw1_L	77	U1 small nuclear ribonucleoprotein C; PRE-mRNA spl	81.18

>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*

Probab=97.94  E-value=3.2e-06  Score=87.23  Aligned_cols=8  Identities=0%  Similarity=0.301  Sum_probs=3.3

Q ss_pred             HHHHHHHH
Q 014614          209 QEMINEKL  216 (421)
Q Consensus       209 ~~~I~~~l  216 (421)
                      ++.|.+++
T Consensus       116 e~~L~~~F  123 (437)
T 3pgw_S          116 ESKLRREF  123 (437)
T ss_pred             HHHHHHHH
Confidence            34444443

>3cw1_L U1 small nuclear ribonucleoprotein C; PRE-mRNA splicing, spliceosome, RNA-binding domain, SM fold, finger, RNA recognition motif, 5' splice site; 5.49A {Homo sapiens} PDB: 1uw2_A 2vrd_A

Probab=81.18  E-value=0.82  Score=36.07  Aligned_cols=29  Identities=31%  Similarity=0.565  Sum_probs=24.5

Q ss_pred             hhhhcccccccccCchhhhhhhhhhhhhhc
Q 014614          270 RVCDICGAFLSVYDSDRRLADHFGGKLHLG  299 (421)
Q Consensus       270 ~VCeVCGA~Ls~~D~d~Rl~dH~~GK~H~G  299 (421)
                      +-|+.|..||. .|+..=...|..|+.|++
T Consensus         4 YyCdYCd~~lt-~Ds~s~Rk~H~~G~kH~~   32 (77)
T 3cw1_L            4 FYCDYCDTYLT-HDSPSVRKTHCSGRKHKE   32 (77)
T ss_pred             cccccCCceec-CCCHHHHHHHHccHHHHH
Confidence            57999999875 677765679999999998

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	421
d2cqea2	29	Zinc finger CCCH domain-containing protein C19orf7	85.97

>d2cqea2 g.66.1.1 (A:429-457) Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.97  E-value=0.16  Score=30.89  Aligned_cols=23  Identities=35%  Similarity=1.191  Sum_probs=17.3

Q ss_pred             CCCcchhccCCCcchhhHhhhhcCCCCCcccc
Q 014614           30 RDVCRLYLAGLCPHELFQLTKMDMGPCPKVHS   61 (421)
Q Consensus        30 ~~VCk~~L~G~CPhdLF~nTK~DlG~C~k~Hd   61 (421)
                      ..+||+||-|+|.       |.  ..|+..|+
T Consensus         6 kelCKfYvqGyCt-------rg--enC~ymH~   28 (29)
T d2cqea2           6 RELCKFYITGFCA-------RA--ENCPYMHG   28 (29)
T ss_dssp             CSBCTTTTTTCCS-------CS--TTCSSBSS
T ss_pred             hhhhhhheeeeec-------CC--cCcccccC
Confidence            4689999999994       33  35777775