Citrus Sinensis ID: 014616
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 421 | 2.2.26 [Sep-21-2011] | |||||||
| Q8VZR6 | 509 | Inositol transporter 1 OS | yes | no | 1.0 | 0.827 | 0.807 | 0.0 | |
| Q9C757 | 580 | Probable inositol transpo | no | no | 0.653 | 0.474 | 0.568 | 7e-88 | |
| Q9ZQP6 | 580 | Probable inositol transpo | no | no | 0.686 | 0.498 | 0.508 | 6e-81 | |
| O23492 | 582 | Inositol transporter 4 OS | no | no | 0.641 | 0.463 | 0.507 | 3e-77 | |
| C0SPB2 | 457 | Putative metabolite trans | yes | no | 0.921 | 0.849 | 0.379 | 1e-69 | |
| Q01440 | 547 | Membrane transporter D1 O | N/A | no | 0.933 | 0.718 | 0.359 | 1e-66 | |
| P46333 | 461 | Probable metabolite trans | no | no | 0.916 | 0.837 | 0.374 | 1e-64 | |
| P30606 | 609 | Myo-inositol transporter | yes | no | 0.931 | 0.643 | 0.331 | 2e-62 | |
| Q96QE2 | 648 | Proton myo-inositol cotra | yes | no | 0.714 | 0.464 | 0.436 | 1e-61 | |
| P87110 | 557 | Myo-inositol transporter | yes | no | 0.969 | 0.732 | 0.316 | 1e-61 |
| >sp|Q8VZR6|INT1_ARATH Inositol transporter 1 OS=Arabidopsis thaliana GN=INT1 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 660 bits (1704), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 348/431 (80%), Positives = 381/431 (88%), Gaps = 10/431 (2%)
Query: 1 MALVGAIVGAASGGWINDAYGRKKATLLADVVFTAGAIIMAAAPDPYVLILGRLLVGLGV 60
MALVGA++GAA+GGWIND YGRKKATL ADVVF AGAI+MAAAPDPYVLI GRLLVGLGV
Sbjct: 79 MALVGAMIGAAAGGWINDYYGRKKATLFADVVFAAGAIVMAAAPDPYVLISGRLLVGLGV 138
Query: 61 GIASVTAPVYIAEASPSEVRGGLVSTNVLMITSGQFLSYLVNLAFTEVPGTWRWMLGVSA 120
G+ASVTAPVYIAEASPSEVRGGLVSTNVLMIT GQFLSYLVN AFT+VPGTWRWMLGVS
Sbjct: 139 GVASVTAPVYIAEASPSEVRGGLVSTNVLMITGGQFLSYLVNSAFTQVPGTWRWMLGVSG 198
Query: 121 VPAIIQFVLMLFMPESPRWLFMKSDKEKAILVLSKIYDIARLEDEIDHLSAAAEEELRKK 180
VPA+IQF+LMLFMPESPRWLFMK+ K +AI VL++ YDI+RLEDEIDHLSAA EEE ++K
Sbjct: 199 VPAVIQFILMLFMPESPRWLFMKNRKAEAIQVLARTYDISRLEDEIDHLSAAEEEEKQRK 258
Query: 181 KTVRYLDVFKSKEIRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQMAGFQSNQLALLLSL 240
+TV YLDVF+SKE+RLAFLAGAGLQAFQQFTGINTVMYYSPTIVQMAGF SNQLAL LSL
Sbjct: 259 RTVGYLDVFRSKELRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQMAGFHSNQLALFLSL 318
Query: 241 AVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSS-GVYGWI 299
VA NA GT+VGIY IDH GRKKLALSSL GVIISL++LS +F S SS G+YGW+
Sbjct: 319 IVAAMNAAGTVVGIYFIDHCGRKKLALSSLFGVIISLLILSVSFFKQSETSSDGGLYGWL 378
Query: 300 AVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAE 359
AV+GLALYI FFAPGMGPVPWT+NSE+YP+QYRGICGGMSATVNWISNLIVAQTFLT+AE
Sbjct: 379 AVLGLALYIVFFAPGMGPVPWTVNSEIYPQQYRGICGGMSATVNWISNLIVAQTFLTIAE 438
Query: 360 LVGTGATFLILAGIAVLAVVFVILFVPETQGLTFLEVEQMWKERA------WGSSL---N 410
GTG TFLILAGIAVLAV+FVI+FVPETQGLTF EVEQ+WKERA WGSS N
Sbjct: 439 AAGTGMTFLILAGIAVLAVIFVIVFVPETQGLTFSEVEQIWKERAYGNISGWGSSSDSNN 498
Query: 411 TESLLEHGNSS 421
E LLE G+ S
Sbjct: 499 MEGLLEQGSQS 509
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Vacuolar inositol-proton symporter involved in the release of myo-inositol from vacuoles. Not involved in glucose or fructose transport. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9C757|INT2_ARATH Probable inositol transporter 2 OS=Arabidopsis thaliana GN=INT2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 324 bits (831), Expect = 7e-88, Method: Compositional matrix adjust.
Identities = 158/278 (56%), Positives = 208/278 (74%), Gaps = 3/278 (1%)
Query: 15 WINDAYGRKKATLLADVVFTAGAIIMAAAPDPYVLILGRLLVGLGVGIASVTAPVYIAEA 74
W ND GR+ A L+AD +F GAIIMAAAP+P +L++GR+ VGLGVG+AS+TAP+YI+EA
Sbjct: 90 WANDKLGRRSAILMADFLFLLGAIIMAAAPNPSLLVVGRVFVGLGVGMASMTAPLYISEA 149
Query: 75 SPSEVRGGLVSTNVLMITSGQFLSYLVNLAFTEVPGTWRWMLGVSAVPAIIQFVLMLFMP 134
SP+++RG LVSTN +IT GQFLSYL+NLAFT+V GTWRWMLG++ +PA++QFVLM +P
Sbjct: 150 SPAKIRGALVSTNGFLITGGQFLSYLINLAFTDVTGTWRWMLGIAGIPALLQFVLMFTLP 209
Query: 135 ESPRWLFMKSDKEKAILVLSKIYDIARLEDEIDHLSAAAEEELRKK---KTVRYLDVFKS 191
ESPRWL+ K +E+A +L +IY +E EI L + E E+ ++ + + + + K+
Sbjct: 210 ESPRWLYRKGREEEAKAILRRIYSAEDVEQEIRALKDSVETEILEEGSSEKINMIKLCKA 269
Query: 192 KEIRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQMAGFQSNQLALLLSLAVAGTNAVGTI 251
K +R +AG GLQ FQQF GINTVMYYSPTIVQ+AGF SN+ ALLLSL AG NA G+I
Sbjct: 270 KTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLAGFASNRTALLLSLVTAGLNAFGSI 329
Query: 252 VGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSS 289
+ IY ID GRKKL + SL GVIISL +L+ F ++
Sbjct: 330 ISIYFIDRIGRKKLLIISLFGVIISLGILTGVFYEAAT 367
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Plasma membrane inositol-proton symporter. Specific for several inositol epimers, such as myoinositol and scylloinositol. D-chiroinositol, mucoinositol, alloinositol and pinitol are also transported with a lower activity. Not active with galactinol and phytate. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9ZQP6|INT3_ARATH Probable inositol transporter 3 OS=Arabidopsis thaliana GN=INT3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 301 bits (771), Expect = 6e-81, Method: Compositional matrix adjust.
Identities = 150/295 (50%), Positives = 202/295 (68%), Gaps = 6/295 (2%)
Query: 1 MALVGAIVGAASGGWINDAYGRKKATLLADVVFTAGAIIMAAAPDPYVLILGRLLVGLGV 60
M + GAIVGAA GGW ND +GR+ + L+ADV+F GA++M A P+V+ILGRLLVG GV
Sbjct: 74 MTVAGAIVGAAIGGWYNDKFGRRMSVLIADVLFLLGALVMVIAHAPWVIILGRLLVGFGV 133
Query: 61 GIASVTAPVYIAEASPSEVRGGLVSTNVLMITSGQFLSYLVNLAFTEVPGTWRWMLGVSA 120
G+AS+T+P+YI+E SP+ +RG LVSTN L+IT GQFLSYL+NLAF PGTWRWMLGVSA
Sbjct: 134 GMASMTSPLYISEMSPARIRGALVSTNGLLITGGQFLSYLINLAFVHTPGTWRWMLGVSA 193
Query: 121 VPAIIQFVLMLFMPESPRWLFMKSDKEKAILVLSKIYDIARLEDEIDHLSAAAEEELRKK 180
+PAIIQF LML +PESPRWL+ K ++ +L +IY +E EI L + E +
Sbjct: 194 IPAIIQFCLMLTLPESPRWLYRNDRKAESRDILERIYPAEMVEAEIAALKESVRAETADE 253
Query: 181 KTV------RYLDVFKSKEIRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQMAGFQSNQL 234
+ + + +R AG +Q QQF GINTVMYYSPTI+Q AG+ SN+
Sbjct: 254 DIIGHTFSDKLRGALSNPVVRHGLAAGITVQVAQQFVGINTVMYYSPTILQFAGYASNKT 313
Query: 235 ALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSS 289
A+ L+L +G NAVG++V + +D +GR+KL + S+ G+I LV+L+ F S+
Sbjct: 314 AMALALITSGLNAVGSVVSMMFVDRYGRRKLMIISMFGIITCLVILAAVFNEASN 368
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Plasma membrane inositol-proton symporter. Arabidopsis thaliana (taxid: 3702) |
| >sp|O23492|INT4_ARATH Inositol transporter 4 OS=Arabidopsis thaliana GN=INT4 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 289 bits (740), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 140/276 (50%), Positives = 194/276 (70%), Gaps = 6/276 (2%)
Query: 15 WINDAYGRKKATLLADVVFTAGAIIMAAAPDPYVLILGRLLVGLGVGIASVTAPVYIAEA 74
WIND +GR+ + L+ADV+F GAI+MA AP P+V+I+GR+ VG GVG+AS+T+P+YI+EA
Sbjct: 89 WINDKFGRRMSILIADVLFLIGAIVMAFAPAPWVIIVGRIFVGFGVGMASMTSPLYISEA 148
Query: 75 SPSEVRGGLVSTNVLMITSGQFLSYLVNLAFTEVPGTWRWMLGVSAVPAIIQFVLMLFMP 134
SP+ +RG LVSTN L+IT GQF SYL+NLAF PGTWRWMLGV+ VPAI+QFVLML +P
Sbjct: 149 SPARIRGALVSTNGLLITGGQFFSYLINLAFVHTPGTWRWMLGVAGVPAIVQFVLMLSLP 208
Query: 135 ESPRWLFMKSDKEKAILVLSKIYDIARLEDEIDHLSAAAEEELRKKKTV------RYLDV 188
ESPRWL+ K ++ +L +IY +E E++ L + E E + + +
Sbjct: 209 ESPRWLYRKDRIAESRAILERIYPADEVEAEMEALKLSVEAEKADEAIIGDSFSAKLKGA 268
Query: 189 FKSKEIRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQMAGFQSNQLALLLSLAVAGTNAV 248
F + +R AG +Q QQF GINTVMYYSP+IVQ AG+ SN+ A+ LSL +G NA+
Sbjct: 269 FGNPVVRRGLAAGITVQVAQQFVGINTVMYYSPSIVQFAGYASNKTAMALSLITSGLNAL 328
Query: 249 GTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAF 284
G+IV + +D +GR+KL + S+ G+I L++L+ F
Sbjct: 329 GSIVSMMFVDRYGRRKLMIISMFGIIACLIILATVF 364
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Plasma membrane inositol-proton symporter. Mediates high-affinity myoinositol-proton symport across the plasma membrane. Active with myoinositol, scylloinositol and D-chiroinositol. Low activity with mucoinositol and alloinositol. Arabidopsis thaliana (taxid: 3702) |
| >sp|C0SPB2|YWTG_BACSU Putative metabolite transport protein YwtG OS=Bacillus subtilis (strain 168) GN=ywtG PE=3 SV=1 | Back alignment and function description |
|---|
Score = 264 bits (674), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 153/403 (37%), Positives = 237/403 (58%), Gaps = 15/403 (3%)
Query: 3 LVGAIVGAASGGWINDAYGRKKATLLADVVFTAGAIIMAAAPDPYVLILGRLLVGLGVGI 62
LVGAI+G+ + G + D +GRKKA + A ++F G + +A AP+ V++L R+++GL VG
Sbjct: 53 LVGAILGSGAAGKLTDRFGRKKAIMAAALLFCIGGLGVALAPNTGVMVLFRIILGLAVGT 112
Query: 63 ASVTAPVYIAEASPSEVRGGLVSTNVLMITSGQFLSYLVNLAFTEVPGTWRWMLGVSAVP 122
++ P+Y++E +P RG L S N LMIT G LSY+VN F + WRWMLG++AVP
Sbjct: 113 STTIVPLYLSELAPKHKRGALSSLNQLMITVGILLSYIVNYIFADAE-AWRWMLGLAAVP 171
Query: 123 AIIQFVLMLFMPESPRWLFMKSDKEKAILVLSKIYDIARLEDEIDHLSAAAEEELRKKKT 182
+++ + +LFMPESPRWLF ++ KA +L K+ ++ EI + A +++ K
Sbjct: 172 SLLLLIGILFMPESPRWLFTNGEESKAKKILEKLRGTKDIDQEIHDIKEAEKQDEGGLK- 230
Query: 183 VRYLDVFKSKEIRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQMAGFQSNQLALLLSLAV 242
++F +R A +AG GL QQF G NT++YY+P GF N ++L ++ +
Sbjct: 231 ----ELF-DPWVRPALIAGLGLAFLQQFIGTNTIIYYAPKTFTNVGF-GNSASILGTVGI 284
Query: 243 AGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWA--FISGSSASSSGVYGWIA 300
N + T+V I +ID GRK L L AG++ISL++L+ F + A+S W
Sbjct: 285 GTVNVLMTLVAIKIIDKIGRKPLLLFGNAGMVISLIVLALVNLFFDNTPAAS-----WTT 339
Query: 301 VIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAEL 360
VI L ++I FA GPV W + E++P RGI G+S + + LIV+ T+ + E
Sbjct: 340 VICLGVFIVVFAVSWGPVVWVMLPELFPLHVRGIGTGVSTLMLHVGTLIVSLTYPILMEA 399
Query: 361 VGTGATFLILAGIAVLAVVFVILFVPETQGLTFLEVEQMWKER 403
+G FLI A I ++A +FV V ET+G + E+EQ +++
Sbjct: 400 IGISYLFLIYAAIGIMAFLFVRFKVTETKGRSLEEIEQDLRDK 442
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Bacillus subtilis (strain 168) (taxid: 224308) |
| >sp|Q01440|GTR1_LEIDO Membrane transporter D1 OS=Leishmania donovani PE=3 SV=1 | Back alignment and function description |
|---|
Score = 253 bits (647), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 147/409 (35%), Positives = 247/409 (60%), Gaps = 16/409 (3%)
Query: 1 MALVGAIVGAASGGWINDAYGRKKATLLADVVFTAGAIIMAAAPDPYVLILGRLLVGLGV 60
+A+ GA VGA G+I+ A+GR+ +AD +F G+++M AAP+ V+++ R++VGL +
Sbjct: 49 IAIAGAFVGAFISGFISAAFGRRPCIAVADALFVIGSVLMGAAPNVEVVLVSRVIVGLAI 108
Query: 61 GIASVTAPVYIAEASPSEVRGGLVSTNVLMITSGQFLS---YLVNLAFTEVPGTWRWMLG 117
GI+S T PVY+AE + + RG + N L +T GQF++ + + FT WR +G
Sbjct: 109 GISSATIPVYLAEVTSPKHRGATIVLNNLFLTGGQFVAAGFTAIMVVFTSKNIGWRVAIG 168
Query: 118 VSAVPAIIQ-FVLMLFMPESPRWLFMKSDKEKAILVLSKIYDIARLEDEIDHLSAAAEEE 176
+ A+PA++Q F L+ F+PESPRWL K ++A V K E+D +E
Sbjct: 169 IGALPAVVQAFCLLFFLPESPRWLLSKGHADRAKAVADKF--------EVDLCEFQEGDE 220
Query: 177 LRKKKTVRYLDVFKSKEIRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQMAGFQSNQLAL 236
L + + Y + ++++R + +GLQ QQF+GINT+MYYS I+ AGF+ + +
Sbjct: 221 LPSVR-IDYRPLM-ARDMRFRVVLSSGLQIIQQFSGINTIMYYSSVILYDAGFRDAIMPV 278
Query: 237 LLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLS-WAFISGSSASSSGV 295
+LS+ +A NA+ T V I+ +D FGR+++ L S+ G ++ LV+++ F G+ S S V
Sbjct: 279 VLSIPLAFMNALFTAVAIFTVDRFGRRRMLLISVFGCLVLLVVIAIIGFFIGTRISYS-V 337
Query: 296 YGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFL 355
G + + LA+++A +APG+G +PW + E++P R ++ NW +N++V+Q F
Sbjct: 338 GGGLFLALLAVFLALYAPGIGCIPWVIMGEIFPTHLRTSAASVATMANWGANVLVSQVFP 397
Query: 356 TVAELVGTGATFLILAGIAVLAVVFVILFVPETQGLTFLEVEQMWKERA 404
+ +G G TF I++G+ L +FV F ET+GLT +++ M+++RA
Sbjct: 398 ILMGAIGVGGTFTIISGLMALGCIFVYFFAVETKGLTLEQIDNMFRKRA 446
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Leishmania donovani (taxid: 5661) |
| >sp|P46333|CSBC_BACSU Probable metabolite transport protein CsbC OS=Bacillus subtilis (strain 168) GN=csbC PE=1 SV=3 | Back alignment and function description |
|---|
Score = 247 bits (631), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 149/398 (37%), Positives = 231/398 (58%), Gaps = 12/398 (3%)
Query: 1 MALVGAIVGAASGGWINDAYGRKKATLLADVVFTAGAIIMAAAPDPYVLILGRLLVGLGV 60
M L+GAI G+A G +D +GR+K + ++F GA+ A + +LI R+++GL V
Sbjct: 52 MLLLGAIFGSALSGTCSDRWGRRKVVFVLSIIFIIGALACAFSQTIGMLIASRVILGLAV 111
Query: 61 GIASVTAPVYIAEASPSEVRGGLVSTNVLMITSGQFLSYLVNLAFTEVPGTWRWMLGVSA 120
G ++ PVY++E +P+++RG L + N LMI +G L+Y+VN FT WRWM+G++A
Sbjct: 112 GGSTALVPVYLSEMAPTKIRGTLGTMNNLMIVTGILLAYIVNYLFTPFEA-WRWMVGLAA 170
Query: 121 VPAIIQFVLMLFMPESPRWLFMKSDKEKAILVLSKIYDIARLEDEIDHLSAAAEEELRKK 180
VPA++ + + FMPESPRWL + +E+A +++ +D +E E+ + + E KK
Sbjct: 171 VPAVLLLIGIAFMPESPRWLVKRGSEEEARRIMNITHDPKDIEMELAEMK---QGEAEKK 227
Query: 181 KTVRYLDVFKSKEIRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQMAGFQSNQLALLLSL 240
+T L V K+K IR L G GL FQQ GINTV+YY+PTI AG ++ A L ++
Sbjct: 228 ETT--LGVLKAKWIRPMLLIGVGLAIFQQAVGINTVIYYAPTIFTKAGLGTSASA-LGTM 284
Query: 241 AVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFIS-GSSASSSGVYGWI 299
+ N + I + LID GRKKL + G+ +SL LS ++ G SAS++ W+
Sbjct: 285 GIGILNVIMCITAMILIDRVGRKKLLIWGSVGITLSLAALSGVLLTLGLSASTA----WM 340
Query: 300 AVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAE 359
V+ L +YI F+ GPV W L E++P + RG G + V +NLIV+ F +
Sbjct: 341 TVVFLGVYIVFYQATWGPVVWVLMPELFPSKARGAATGFTTLVLSAANLIVSLVFPLMLS 400
Query: 360 LVGTGATFLILAGIAVLAVVFVILFVPETQGLTFLEVE 397
+G F++ + I +L+ F VPET+G + E+E
Sbjct: 401 AMGIAWVFMVFSVICLLSFFFAFYMVPETKGKSLEEIE 438
|
Could serve either a nutritional or an osmotic protection function. Bacillus subtilis (strain 168) (taxid: 224308) |
| >sp|P30606|ITR2_YEAST Myo-inositol transporter 2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ITR2 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 239 bits (611), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 139/419 (33%), Positives = 234/419 (55%), Gaps = 27/419 (6%)
Query: 4 VGAIVGAASGGWINDAYGRKKATLLADVVFTAGAIIMAAAPDPYVLILGRLLVGLGVGIA 63
+GA++ + G D +GR+ + ++++F GAI+ A + + GRL++G GVGI
Sbjct: 160 LGALITSVGAGTAADVFGRRPCLMFSNLMFLIGAILQITAHKFWQMAAGRLIMGFGVGIG 219
Query: 64 SVTAPVYIAEASPSEVRGGLVSTNVLMITSGQFLSYLVNLAFTEVPGTWRWMLGVSAVPA 123
S+ +P++I+E +P +RG L N L +T GQ ++Y V WR ++G+S +P
Sbjct: 220 SLISPLFISEIAPKMIRGRLTVINSLWLTGGQLIAYGCGAGLNHVKNGWRILVGLSLIPT 279
Query: 124 IIQFVLMLFMPESPRWLFMKSDKEKAILVLSKIYDIARLEDEI-----DHLSAAAEEELR 178
++QF F+P++PR+ MK D ++A +VL + Y EDEI + LS+ +
Sbjct: 280 VLQFSFFCFLPDTPRYYVMKGDLKRAKMVLKRSY--VNTEDEIIDQKVEELSSLNQSIPG 337
Query: 179 KKKTVRYLDVFKS-----KEIRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQMAGFQSNQ 233
K ++ ++ K R A + G GLQA QQFTG N++MY+S TI + GF+++
Sbjct: 338 KNPITKFWNMVKELHTVPSNFR-ALIIGCGLQAIQQFTGWNSLMYFSGTIFETVGFKNSS 396
Query: 234 LALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAF------ISG 287
+S+ V+GTN V T++ + ID GR+ + L L G+ ++LV+ + AF +G
Sbjct: 397 ---AVSIIVSGTNFVFTLIAFFCIDKIGRRYILLIGLPGMTVALVICAIAFHFLGIKFNG 453
Query: 288 SSA--SSSGVYGW--IAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVN 343
+ A +S G W + ++ + +Y AF+A G+G VPW SE++P+ RG+ + N
Sbjct: 454 ADAVVASDGFSSWGIVIIVFIIVYAAFYALGIGTVPWQ-QSELFPQNVRGVGTSYATATN 512
Query: 344 WISNLIVAQTFLTVAELVGTGATFLILAGIAVLAVVFVILFVPETQGLTFLEVEQMWKE 402
W +L++A TFLT+ + + TF AG+A L+ +F PE GL EV+ + K+
Sbjct: 513 WAGSLVIASTFLTMLQNITPTGTFSFFAGVACLSTIFCYFCYPELSGLELEEVQTILKD 571
|
Minor transporter for myo-inositol. Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292) |
| >sp|Q96QE2|MYCT_HUMAN Proton myo-inositol cotransporter OS=Homo sapiens GN=SLC2A13 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 237 bits (605), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 135/309 (43%), Positives = 198/309 (64%), Gaps = 8/309 (2%)
Query: 3 LVGAIVGAAS-----GGWINDAYGRKKATLLADVVFTAGAIIMAAAPDPYVLILGRLLVG 57
LV + VGAA+ GG +N +GR+ A LLA +FTAG+ ++AAA + L+ GRL+VG
Sbjct: 123 LVSSTVGAAAVSALAGGALNGVFGRRAAILLASALFTAGSAVLAAANNKETLLAGRLVVG 182
Query: 58 LGVGIASVTAPVYIAEASPSEVRGGLVSTNVLMITSGQFLSYLVNLAFTEVPGT-WRWML 116
LG+GIAS+T PVYIAE SP +RG LV+ N L IT GQF + +V+ AF+ + WR+ML
Sbjct: 183 LGIGIASMTVPVYIAEVSPPNLRGRLVTINTLFITGGQFFASVVDGAFSYLQKDGWRYML 242
Query: 117 GVSAVPAIIQFVLMLFMPESPRWLFMKSDKEKAILVLSKIYDIARLEDEIDHLSAAAEEE 176
G++AVPA+IQF LF+PESPRWL K +KA +LS++ +++E D + EEE
Sbjct: 243 GLAAVPAVIQFFGFLFLPESPRWLIQKGQTQKARRILSQMRGNQTIDEEYDSIKNNIEEE 302
Query: 177 LRKKKTVR--YLDVFKSKEIRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQMAGFQSNQL 234
++ + + R A + G GLQ FQQ +GINT+MYYS TI+QM+G + ++L
Sbjct: 303 EKEVGSAGPVICRMLSYPPTRRALIVGCGLQMFQQLSGINTIMYYSATILQMSGVEDDRL 362
Query: 235 ALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSG 294
A+ L+ A TN + T+VG++L++ GR+KL SLAG ++L++L+ F+ + S
Sbjct: 363 AIWLASVTAFTNFIFTLVGVWLVEKVGRRKLTFGSLAGTTVALIILALGFVLSAQVSPRI 422
Query: 295 VYGWIAVIG 303
+ IA G
Sbjct: 423 TFKPIAPSG 431
|
H(+)-myo-inositol cotransporter. Can also transport related stereoisomers. Homo sapiens (taxid: 9606) |
| >sp|P87110|ITR2_SCHPO Myo-inositol transporter 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=itr2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 237 bits (604), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 135/427 (31%), Positives = 237/427 (55%), Gaps = 19/427 (4%)
Query: 6 AIVGAASGGWINDAYGRKKATLLADVVFTAGAIIMAAAPDPYVLILGRLLVGLGVGIASV 65
A++ A + GW+ D GRK+ L AD +F G++IMAA+ + ++++GR +VG G+G+ S+
Sbjct: 133 ALISATTSGWLADWVGRKRLLLCADAIFVIGSVIMAASRNVAMMVVGRFIVGYGIGLTSL 192
Query: 66 TAPVYIAEASPSEVRGGLVSTNVLMITSGQFLSYLVNLAFTEVPGTWRWMLGVSAVPAII 125
P+YI E +P+ +RG LV V+ IT GQ ++Y +N AF V WR M G+ A PA+
Sbjct: 193 IVPMYITELAPARLRGRLVIIYVVFITGGQLIAYSLNAAFEHVHQGWRIMFGIGAAPALG 252
Query: 126 QFVLMLFMPESPRWLFMKSDKEKAILVLSKIYDIARLEDEIDHLSAAAEEELRKK--KTV 183
Q + + + PESPR+L + EK +LS+I+ A+ EI + + +E ++ +
Sbjct: 253 QLISLFWTPESPRYLLRHNHVEKVYKILSRIHPEAK-PAEIAYKVSLIQEGVKVDFPEGN 311
Query: 184 RYLDVFKSKEI-------RLAFLAGAGLQAFQQFTGINTVMYYSPTIVQMAGFQSNQLAL 236
++ F S ++ R + G LQ FQQF+G N + Y+S I Q GF++ ++
Sbjct: 312 KFQHFFHSLKVLFTVPSNRRSLFIGCFLQWFQQFSGTNAIQYFSAIIFQSVGFKN---SI 368
Query: 237 LLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVL--LSWAFISGSSASSSG 294
+S+ V TN V TIV ID GR+++ L + A +I L L +++ F+ + ++
Sbjct: 369 SVSIVVGATNFVFTIVAFMFIDRIGRRRILLCTSAVMIAGLALCAIAYHFLPADTTQNTN 428
Query: 295 VYGWIAVI--GLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQ 352
GW V+ + +++A +A G+G +PW +E++P + R + G S +NW+ NLI++
Sbjct: 429 S-GWQYVVLASIIIFLASYASGIGNIPWQ-QAELFPMEVRALGAGFSTAINWVGNLIISA 486
Query: 353 TFLTVAELVGTGATFLILAGIAVLAVVFVILFVPETQGLTFLEVEQMWKERAWGSSLNTE 412
+FLT+ E + TF + AG + +V PE G++ + ++ ++ W + +
Sbjct: 487 SFLTMMESITPTGTFALFAGFCFVGLVTSYFTYPELAGMSIENIHKLLEKGFWQAVKEST 546
Query: 413 SLLEHGN 419
+ G
Sbjct: 547 KRVRKGR 553
|
Transporter for myo-inositol. Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 421 | ||||||
| 224133102 | 489 | predicted protein [Populus trichocarpa] | 0.995 | 0.856 | 0.823 | 0.0 | |
| 297824309 | 521 | hypothetical protein ARALYDRAFT_322009 [ | 1.0 | 0.808 | 0.812 | 0.0 | |
| 2289003 | 521 | putative membrane transporter [Arabidops | 1.0 | 0.808 | 0.807 | 0.0 | |
| 30689342 | 509 | putative inositol transporter 1 [Arabido | 1.0 | 0.827 | 0.807 | 0.0 | |
| 449468830 | 495 | PREDICTED: inositol transporter 1-like [ | 0.952 | 0.810 | 0.795 | 0.0 | |
| 357501429 | 500 | hypothetical protein MTR_7g005910 [Medic | 0.969 | 0.816 | 0.743 | 1e-179 | |
| 356527449 | 501 | PREDICTED: probable inositol transporter | 0.969 | 0.814 | 0.762 | 1e-178 | |
| 356576905 | 499 | PREDICTED: probable inositol transporter | 0.947 | 0.799 | 0.748 | 1e-178 | |
| 225433847 | 499 | PREDICTED: probable inositol transporter | 0.997 | 0.841 | 0.790 | 1e-177 | |
| 357445131 | 508 | hypothetical protein MTR_1g116660 [Medic | 0.947 | 0.785 | 0.747 | 1e-174 |
| >gi|224133102|ref|XP_002327961.1| predicted protein [Populus trichocarpa] gi|222837370|gb|EEE75749.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 685 bits (1767), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 345/419 (82%), Positives = 381/419 (90%)
Query: 1 MALVGAIVGAASGGWINDAYGRKKATLLADVVFTAGAIIMAAAPDPYVLILGRLLVGLGV 60
MALVGAI+GAA GGWINDAYGRKKATLLADVVF AG+I+MAAAP+PYVLILGRL VGLGV
Sbjct: 71 MALVGAIIGAAGGGWINDAYGRKKATLLADVVFAAGSIVMAAAPNPYVLILGRLFVGLGV 130
Query: 61 GIASVTAPVYIAEASPSEVRGGLVSTNVLMITSGQFLSYLVNLAFTEVPGTWRWMLGVSA 120
GIASVTAPVYIAEASPSEVRGGLVSTNVLMIT GQFLSYLVNLAFTEVPGTWRWM+GV+A
Sbjct: 131 GIASVTAPVYIAEASPSEVRGGLVSTNVLMITGGQFLSYLVNLAFTEVPGTWRWMVGVAA 190
Query: 121 VPAIIQFVLMLFMPESPRWLFMKSDKEKAILVLSKIYDIARLEDEIDHLSAAAEEELRKK 180
VPA+IQF +ML +PESPRWLFMK +K KAI +LSKIYD+ARL+DEIDHLS EEE +K+
Sbjct: 191 VPAVIQFCIMLCLPESPRWLFMKDNKAKAIAILSKIYDVARLQDEIDHLSITEEEECQKR 250
Query: 181 KTVRYLDVFKSKEIRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQMAGFQSNQLALLLSL 240
V+ DVFKSKEIRLAFL GAGLQAFQQFTGINTVMYYSPTIVQMAGF SNQLALLLSL
Sbjct: 251 NDVKISDVFKSKEIRLAFLVGAGLQAFQQFTGINTVMYYSPTIVQMAGFSSNQLALLLSL 310
Query: 241 AVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGWIA 300
+A NA GT++GIYLIDHFGRKKLA+SSLAGVI SL +L+ AF SS SS+ +YGWIA
Sbjct: 311 VIAAMNAAGTVLGIYLIDHFGRKKLAISSLAGVIASLFILAGAFFGKSSGSSNELYGWIA 370
Query: 301 VIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAEL 360
V+GLAL IA F+PGMGPVPWT+NSE+YPEQYRGICGGMSATVNWISNLIVAQTFL++AE
Sbjct: 371 VLGLALCIACFSPGMGPVPWTVNSEIYPEQYRGICGGMSATVNWISNLIVAQTFLSIAEA 430
Query: 361 VGTGATFLILAGIAVLAVVFVILFVPETQGLTFLEVEQMWKERAWGSSLNTESLLEHGN 419
VGTG+TFL+LAGIAVLAVVFVI++VPET GL F+EVEQ+WKERAWGSS NTESLLE GN
Sbjct: 431 VGTGSTFLMLAGIAVLAVVFVIMYVPETMGLAFVEVEQIWKERAWGSSYNTESLLEQGN 489
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297824309|ref|XP_002880037.1| hypothetical protein ARALYDRAFT_322009 [Arabidopsis lyrata subsp. lyrata] gi|297325876|gb|EFH56296.1| hypothetical protein ARALYDRAFT_322009 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 663 bits (1711), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 350/431 (81%), Positives = 382/431 (88%), Gaps = 10/431 (2%)
Query: 1 MALVGAIVGAASGGWINDAYGRKKATLLADVVFTAGAIIMAAAPDPYVLILGRLLVGLGV 60
MALVGA++GAA+GGWIND YGRKKATL ADVVF AGAI+MAAAPDPYVLI GRLLVGLGV
Sbjct: 91 MALVGAMIGAAAGGWINDYYGRKKATLFADVVFAAGAIVMAAAPDPYVLISGRLLVGLGV 150
Query: 61 GIASVTAPVYIAEASPSEVRGGLVSTNVLMITSGQFLSYLVNLAFTEVPGTWRWMLGVSA 120
G+ASVTAPVYIAEASPSEVRGGLVSTNVLMIT GQFLSYLVN AFT+VPGTWRWMLGVS
Sbjct: 151 GVASVTAPVYIAEASPSEVRGGLVSTNVLMITGGQFLSYLVNSAFTQVPGTWRWMLGVSG 210
Query: 121 VPAIIQFVLMLFMPESPRWLFMKSDKEKAILVLSKIYDIARLEDEIDHLSAAAEEELRKK 180
VPA+IQFVLMLFMPESPRWLFMK+ K +AI VL++ YDI+RLEDEIDHLSAA EEE ++K
Sbjct: 211 VPAVIQFVLMLFMPESPRWLFMKNRKAEAIQVLARTYDISRLEDEIDHLSAAEEEEKQRK 270
Query: 181 KTVRYLDVFKSKEIRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQMAGFQSNQLALLLSL 240
+TV YLDVF+SKE+RLAFLAGAGLQAFQQFTGINTVMYYSPTIVQMAGF SNQLAL LSL
Sbjct: 271 RTVGYLDVFRSKELRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQMAGFHSNQLALFLSL 330
Query: 241 AVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSS-GVYGWI 299
VA NA GT+VGIY IDH GRKKLALSSL GVIISL++LS +F S ASS G+YGW+
Sbjct: 331 IVAAMNAAGTVVGIYFIDHCGRKKLALSSLFGVIISLLILSVSFFKQSDASSDGGLYGWL 390
Query: 300 AVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAE 359
AV+GLALYIAFFAPGMGPVPWT+NSE+YP+QYRGICGGMSATVNWISNLIVAQTFLT+AE
Sbjct: 391 AVLGLALYIAFFAPGMGPVPWTVNSEIYPQQYRGICGGMSATVNWISNLIVAQTFLTIAE 450
Query: 360 LVGTGATFLILAGIAVLAVVFVILFVPETQGLTFLEVEQMWKERA------WGSSL---N 410
GTG TFLILAGIA LAV+FVI+FVPETQGLTF EVEQ+WKERA WGSS N
Sbjct: 451 AAGTGMTFLILAGIAFLAVIFVIVFVPETQGLTFSEVEQIWKERAYGDISGWGSSSDSNN 510
Query: 411 TESLLEHGNSS 421
E LLE G+ S
Sbjct: 511 MEGLLEQGSQS 521
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|2289003|gb|AAB64332.1| putative membrane transporter [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 661 bits (1706), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 348/431 (80%), Positives = 381/431 (88%), Gaps = 10/431 (2%)
Query: 1 MALVGAIVGAASGGWINDAYGRKKATLLADVVFTAGAIIMAAAPDPYVLILGRLLVGLGV 60
MALVGA++GAA+GGWIND YGRKKATL ADVVF AGAI+MAAAPDPYVLI GRLLVGLGV
Sbjct: 91 MALVGAMIGAAAGGWINDYYGRKKATLFADVVFAAGAIVMAAAPDPYVLISGRLLVGLGV 150
Query: 61 GIASVTAPVYIAEASPSEVRGGLVSTNVLMITSGQFLSYLVNLAFTEVPGTWRWMLGVSA 120
G+ASVTAPVYIAEASPSEVRGGLVSTNVLMIT GQFLSYLVN AFT+VPGTWRWMLGVS
Sbjct: 151 GVASVTAPVYIAEASPSEVRGGLVSTNVLMITGGQFLSYLVNSAFTQVPGTWRWMLGVSG 210
Query: 121 VPAIIQFVLMLFMPESPRWLFMKSDKEKAILVLSKIYDIARLEDEIDHLSAAAEEELRKK 180
VPA+IQF+LMLFMPESPRWLFMK+ K +AI VL++ YDI+RLEDEIDHLSAA EEE ++K
Sbjct: 211 VPAVIQFILMLFMPESPRWLFMKNRKAEAIQVLARTYDISRLEDEIDHLSAAEEEEKQRK 270
Query: 181 KTVRYLDVFKSKEIRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQMAGFQSNQLALLLSL 240
+TV YLDVF+SKE+RLAFLAGAGLQAFQQFTGINTVMYYSPTIVQMAGF SNQLAL LSL
Sbjct: 271 RTVGYLDVFRSKELRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQMAGFHSNQLALFLSL 330
Query: 241 AVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSS-GVYGWI 299
VA NA GT+VGIY IDH GRKKLALSSL GVIISL++LS +F S SS G+YGW+
Sbjct: 331 IVAAMNAAGTVVGIYFIDHCGRKKLALSSLFGVIISLLILSVSFFKQSETSSDGGLYGWL 390
Query: 300 AVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAE 359
AV+GLALYI FFAPGMGPVPWT+NSE+YP+QYRGICGGMSATVNWISNLIVAQTFLT+AE
Sbjct: 391 AVLGLALYIVFFAPGMGPVPWTVNSEIYPQQYRGICGGMSATVNWISNLIVAQTFLTIAE 450
Query: 360 LVGTGATFLILAGIAVLAVVFVILFVPETQGLTFLEVEQMWKERA------WGSSL---N 410
GTG TFLILAGIAVLAV+FVI+FVPETQGLTF EVEQ+WKERA WGSS N
Sbjct: 451 AAGTGMTFLILAGIAVLAVIFVIVFVPETQGLTFSEVEQIWKERAYGNISGWGSSSDSNN 510
Query: 411 TESLLEHGNSS 421
E LLE G+ S
Sbjct: 511 MEGLLEQGSQS 521
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|30689342|ref|NP_850393.1| putative inositol transporter 1 [Arabidopsis thaliana] gi|75331205|sp|Q8VZR6.1|INT1_ARATH RecName: Full=Inositol transporter 1 gi|17380890|gb|AAL36257.1| putative membrane transporter protein [Arabidopsis thaliana] gi|20465939|gb|AAM20155.1| putative membrane transporter protein [Arabidopsis thaliana] gi|84617967|emb|CAJ00303.1| inositol transporter 1 [Arabidopsis thaliana] gi|330255158|gb|AEC10252.1| putative inositol transporter 1 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 660 bits (1704), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 348/431 (80%), Positives = 381/431 (88%), Gaps = 10/431 (2%)
Query: 1 MALVGAIVGAASGGWINDAYGRKKATLLADVVFTAGAIIMAAAPDPYVLILGRLLVGLGV 60
MALVGA++GAA+GGWIND YGRKKATL ADVVF AGAI+MAAAPDPYVLI GRLLVGLGV
Sbjct: 79 MALVGAMIGAAAGGWINDYYGRKKATLFADVVFAAGAIVMAAAPDPYVLISGRLLVGLGV 138
Query: 61 GIASVTAPVYIAEASPSEVRGGLVSTNVLMITSGQFLSYLVNLAFTEVPGTWRWMLGVSA 120
G+ASVTAPVYIAEASPSEVRGGLVSTNVLMIT GQFLSYLVN AFT+VPGTWRWMLGVS
Sbjct: 139 GVASVTAPVYIAEASPSEVRGGLVSTNVLMITGGQFLSYLVNSAFTQVPGTWRWMLGVSG 198
Query: 121 VPAIIQFVLMLFMPESPRWLFMKSDKEKAILVLSKIYDIARLEDEIDHLSAAAEEELRKK 180
VPA+IQF+LMLFMPESPRWLFMK+ K +AI VL++ YDI+RLEDEIDHLSAA EEE ++K
Sbjct: 199 VPAVIQFILMLFMPESPRWLFMKNRKAEAIQVLARTYDISRLEDEIDHLSAAEEEEKQRK 258
Query: 181 KTVRYLDVFKSKEIRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQMAGFQSNQLALLLSL 240
+TV YLDVF+SKE+RLAFLAGAGLQAFQQFTGINTVMYYSPTIVQMAGF SNQLAL LSL
Sbjct: 259 RTVGYLDVFRSKELRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQMAGFHSNQLALFLSL 318
Query: 241 AVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSS-GVYGWI 299
VA NA GT+VGIY IDH GRKKLALSSL GVIISL++LS +F S SS G+YGW+
Sbjct: 319 IVAAMNAAGTVVGIYFIDHCGRKKLALSSLFGVIISLLILSVSFFKQSETSSDGGLYGWL 378
Query: 300 AVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAE 359
AV+GLALYI FFAPGMGPVPWT+NSE+YP+QYRGICGGMSATVNWISNLIVAQTFLT+AE
Sbjct: 379 AVLGLALYIVFFAPGMGPVPWTVNSEIYPQQYRGICGGMSATVNWISNLIVAQTFLTIAE 438
Query: 360 LVGTGATFLILAGIAVLAVVFVILFVPETQGLTFLEVEQMWKERA------WGSSL---N 410
GTG TFLILAGIAVLAV+FVI+FVPETQGLTF EVEQ+WKERA WGSS N
Sbjct: 439 AAGTGMTFLILAGIAVLAVIFVIVFVPETQGLTFSEVEQIWKERAYGNISGWGSSSDSNN 498
Query: 411 TESLLEHGNSS 421
E LLE G+ S
Sbjct: 499 MEGLLEQGSQS 509
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449468830|ref|XP_004152124.1| PREDICTED: inositol transporter 1-like [Cucumis sativus] gi|449484700|ref|XP_004156956.1| PREDICTED: inositol transporter 1-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 648 bits (1671), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 319/401 (79%), Positives = 357/401 (89%)
Query: 15 WINDAYGRKKATLLADVVFTAGAIIMAAAPDPYVLILGRLLVGLGVGIASVTAPVYIAEA 74
WINDAYGRKKATLLADVVF GA +MAAAPDPY+LI GR LVG+GVG+ASVTAPVYIAEA
Sbjct: 93 WINDAYGRKKATLLADVVFAIGAAVMAAAPDPYILIAGRFLVGMGVGVASVTAPVYIAEA 152
Query: 75 SPSEVRGGLVSTNVLMITSGQFLSYLVNLAFTEVPGTWRWMLGVSAVPAIIQFVLMLFMP 134
SPSE+RGGLVSTNVLMIT GQFLSYL+NLAFT+VPGTWRWMLGVS VPA+IQFV MLF+P
Sbjct: 153 SPSEIRGGLVSTNVLMITVGQFLSYLINLAFTQVPGTWRWMLGVSGVPAVIQFVFMLFLP 212
Query: 135 ESPRWLFMKSDKEKAILVLSKIYDIARLEDEIDHLSAAAEEELRKKKTVRYLDVFKSKEI 194
ESPRWLFMK +K KA VLSKIYD RLEDEID+LS+ EEE KK V Y+DVFKSKEI
Sbjct: 213 ESPRWLFMKDEKSKATAVLSKIYDFPRLEDEIDYLSSQLEEEKHKKINVSYMDVFKSKEI 272
Query: 195 RLAFLAGAGLQAFQQFTGINTVMYYSPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGI 254
R+AFLAGAGLQAFQQFTGINTVMYYSPTIVQMAGF+SNQLALLLSL VA NA GT++GI
Sbjct: 273 RIAFLAGAGLQAFQQFTGINTVMYYSPTIVQMAGFRSNQLALLLSLIVAAMNAAGTVLGI 332
Query: 255 YLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLALYIAFFAPG 314
YLIDH GRKKLA+SSL+GVI+SL +LS A +G S++G+ G IAVIGLALYIAFF+PG
Sbjct: 333 YLIDHVGRKKLAISSLSGVIVSLAILSGALFAGQYGSTNGLNGCIAVIGLALYIAFFSPG 392
Query: 315 MGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELVGTGATFLILAGIA 374
MGPVPWT+NSE+YPE YRG+CGGMSATVNWISNLIVAQTFL++AE+ GTG TFLI A IA
Sbjct: 393 MGPVPWTVNSEIYPEAYRGLCGGMSATVNWISNLIVAQTFLSLAEVAGTGLTFLIFAAIA 452
Query: 375 VLAVVFVILFVPETQGLTFLEVEQMWKERAWGSSLNTESLL 415
VLA+VFV+++VPETQGLTF EVE++WKERAWG NTESLL
Sbjct: 453 VLAIVFVVVYVPETQGLTFEEVERIWKERAWGRDSNTESLL 493
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357501429|ref|XP_003621003.1| hypothetical protein MTR_7g005910 [Medicago truncatula] gi|124365541|gb|ABN09775.1| General substrate transporter [Medicago truncatula] gi|355496018|gb|AES77221.1| hypothetical protein MTR_7g005910 [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 632 bits (1630), Expect = e-179, Method: Compositional matrix adjust.
Identities = 304/409 (74%), Positives = 362/409 (88%), Gaps = 1/409 (0%)
Query: 13 GGWINDAYGRKKATLLADVVFTAGAIIMAAAPDPYVLILGRLLVGLGVGIASVTAPVYIA 72
GGW+NDAYGRKKATLLADV+F GAI+MAAAPDPYVLI GRLLVGLGVGIASVTAPVYIA
Sbjct: 93 GGWLNDAYGRKKATLLADVIFILGAILMAAAPDPYVLIAGRLLVGLGVGIASVTAPVYIA 152
Query: 73 EASPSEVRGGLVSTNVLMITSGQFLSYLVNLAFTEVPGTWRWMLGVSAVPAIIQFVLMLF 132
E +PSE+RG LVSTNVLMIT GQF+SYLVNL FT+VPGTWRWMLGVS VPA+IQF+ MLF
Sbjct: 153 EVAPSEIRGSLVSTNVLMITGGQFVSYLVNLVFTQVPGTWRWMLGVSGVPALIQFICMLF 212
Query: 133 MPESPRWLFMKSDKEKAILVLSKIYDIARLEDEIDHLSAAAEEELRKKKTVRYLDVFKSK 192
+PESPRWLF+K+ K +A+ V+SKIYD++RLEDEID L+A +E+E +++ T+++ VF+SK
Sbjct: 213 LPESPRWLFIKNRKNEAVDVISKIYDLSRLEDEIDFLTAQSEQERQRRSTIKFWHVFRSK 272
Query: 193 EIRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIV 252
E RLAFL G GL AFQQFTGINTVMYYSPTIVQMAGF +NQLALLLSL VAG NAVGTI+
Sbjct: 273 ETRLAFLVGGGLLAFQQFTGINTVMYYSPTIVQMAGFHANQLALLLSLIVAGMNAVGTIL 332
Query: 253 GIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLALYIAFFA 312
GIYLID+ GRKKLALSSLAGVI SL++LS AF SS S++ VYGW+AVIGL LYI FF+
Sbjct: 333 GIYLIDNTGRKKLALSSLAGVIASLIMLSVAFYKQSS-STNEVYGWLAVIGLGLYIGFFS 391
Query: 313 PGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELVGTGATFLILAG 372
PGMGPVPWT+NSE+YPE+YRGICGGM+ATV WISNLIV+++FL++A+ +G +TFLI+A
Sbjct: 392 PGMGPVPWTINSEIYPEEYRGICGGMAATVCWISNLIVSESFLSIADAIGIASTFLIIAV 451
Query: 373 IAVLAVVFVILFVPETQGLTFLEVEQMWKERAWGSSLNTESLLEHGNSS 421
IAV+A +FV+L+VPETQGLTF EVE +WKERAWG + NT++LLE G+ S
Sbjct: 452 IAVVAFLFVLLYVPETQGLTFDEVELIWKERAWGKNPNTQNLLEQGSQS 500
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356527449|ref|XP_003532323.1| PREDICTED: probable inositol transporter 1-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 631 bits (1627), Expect = e-178, Method: Compositional matrix adjust.
Identities = 312/409 (76%), Positives = 369/409 (90%), Gaps = 1/409 (0%)
Query: 13 GGWINDAYGRKKATLLADVVFTAGAIIMAAAPDPYVLILGRLLVGLGVGIASVTAPVYIA 72
GGWINDAYGRKKATL ADV+FTAGAIIMA+APDPYVLILGRLLVGLGVGIASVTAPVYIA
Sbjct: 94 GGWINDAYGRKKATLFADVIFTAGAIIMASAPDPYVLILGRLLVGLGVGIASVTAPVYIA 153
Query: 73 EASPSEVRGGLVSTNVLMITSGQFLSYLVNLAFTEVPGTWRWMLGVSAVPAIIQFVLMLF 132
EASPSE+RG LVSTNVLMIT GQFLSYLVNLAFT VPGTWRWMLGVS VPA++QFVLMLF
Sbjct: 154 EASPSEIRGSLVSTNVLMITGGQFLSYLVNLAFTGVPGTWRWMLGVSGVPAVVQFVLMLF 213
Query: 133 MPESPRWLFMKSDKEKAILVLSKIYDIARLEDEIDHLSAAAEEELRKKKTVRYLDVFKSK 192
+PESPRWLF+K+ K +A+ VLSKI+D+ARLEDE+D L+A +E+E +++ +++ DVF+SK
Sbjct: 214 LPESPRWLFVKNRKNEAVDVLSKIFDVARLEDEVDFLTAQSEQERQRRSNIKFWDVFRSK 273
Query: 193 EIRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIV 252
EIRLAFL GAGL AFQQFTGINTVMYYSPTIVQMAGF +N+LALLLSL VAG NA GTI+
Sbjct: 274 EIRLAFLVGAGLLAFQQFTGINTVMYYSPTIVQMAGFHANELALLLSLIVAGMNAAGTIL 333
Query: 253 GIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLALYIAFFA 312
GIYLIDH GRKKLALSSL GVI+SLV+L++AF SS S+ +YGW+AV+GLALYI FF+
Sbjct: 334 GIYLIDHAGRKKLALSSLGGVIVSLVILAFAFYKQSSTSNE-LYGWLAVVGLALYIGFFS 392
Query: 313 PGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELVGTGATFLILAG 372
PGMGPVPWTL+SE+YPE+YRGICGGMSATV W+SNLIV++TFL++AE +G G+TFLI+
Sbjct: 393 PGMGPVPWTLSSEIYPEEYRGICGGMSATVCWVSNLIVSETFLSIAEGIGIGSTFLIIGV 452
Query: 373 IAVLAVVFVILFVPETQGLTFLEVEQMWKERAWGSSLNTESLLEHGNSS 421
IAV+A VFV+++VPET+GLTF EVE +W+ERAWG + NT++LLE G+SS
Sbjct: 453 IAVVAFVFVLVYVPETKGLTFDEVEVIWRERAWGKNPNTQNLLEQGSSS 501
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356576905|ref|XP_003556570.1| PREDICTED: probable inositol transporter 1-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 629 bits (1622), Expect = e-178, Method: Compositional matrix adjust.
Identities = 300/401 (74%), Positives = 357/401 (89%), Gaps = 2/401 (0%)
Query: 15 WINDAYGRKKATLLADVVFTAGAIIMAAAPDPYVLILGRLLVGLGVGIASVTAPVYIAEA 74
WIND YGRKKATL+ADV+FT GAI+MAAAPDPY+LI+GR+LVGLGVGIASVTAPVYIAE+
Sbjct: 94 WINDVYGRKKATLIADVIFTLGAIVMAAAPDPYILIIGRVLVGLGVGIASVTAPVYIAES 153
Query: 75 SPSEVRGGLVSTNVLMITSGQFLSYLVNLAFTEVPGTWRWMLGVSAVPAIIQFVLMLFMP 134
SPSE+RG LV NVLMIT GQFLSYL+NLAFT+VPGTWRWMLGVS VPA++QF LML +P
Sbjct: 154 SPSEIRGALVGINVLMITGGQFLSYLINLAFTQVPGTWRWMLGVSGVPAVVQFFLMLLLP 213
Query: 135 ESPRWLFMKSDKEKAILVLSKIYDIARLEDEIDHLSAAAEEELRKKKTVRYLDVFKSKEI 194
ESPRWLF+K+ KE+AI VL+KIYD ARLEDE++ L+ +E++ +++ +RY DVFKSKEI
Sbjct: 214 ESPRWLFIKNRKEEAITVLAKIYDFARLEDEVNLLTTQSEKDCQRRDGIRYWDVFKSKEI 273
Query: 195 RLAFLAGAGLQAFQQFTGINTVMYYSPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGI 254
RLAFLAGAGLQAFQQF GINTVMYYSPTIVQMAGFQSN+LALLLSL VAG NA G+++GI
Sbjct: 274 RLAFLAGAGLQAFQQFIGINTVMYYSPTIVQMAGFQSNELALLLSLIVAGMNAAGSVLGI 333
Query: 255 YLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLALYIAFFAPG 314
YLIDH GR+KLAL SL GVI SL++L+ +F + S S SG+YGW+A++GLALYIAFF+PG
Sbjct: 334 YLIDHAGRRKLALYSLGGVIASLIILALSFFNQS--SESGLYGWLAILGLALYIAFFSPG 391
Query: 315 MGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELVGTGATFLILAGIA 374
MGPVPWT+NSEVYPE+YRGICGGMSATVNW+SNLIV Q+FL+VA VGTG TFLI+A IA
Sbjct: 392 MGPVPWTVNSEVYPEEYRGICGGMSATVNWVSNLIVVQSFLSVAAAVGTGPTFLIIAIIA 451
Query: 375 VLAVVFVILFVPETQGLTFLEVEQMWKERAWGSSLNTESLL 415
VLA +FV+++VPET+GLTF EVE +WKERAWG + + +SLL
Sbjct: 452 VLAFMFVVVYVPETKGLTFDEVELLWKERAWGKNPDAQSLL 492
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225433847|ref|XP_002263742.1| PREDICTED: probable inositol transporter 1 [Vitis vinifera] gi|297743762|emb|CBI36645.3| unnamed protein product [Vitis vinifera] gi|310877896|gb|ADP37179.1| putative inositol transporter [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 626 bits (1615), Expect = e-177, Method: Compositional matrix adjust.
Identities = 333/421 (79%), Positives = 378/421 (89%), Gaps = 1/421 (0%)
Query: 1 MALVGAIVGAASGGWINDAYGRKKATLLADVVFTAGAIIMAAAPDPYVLILGRLLVGLGV 60
MALVGA++GAA+GGWINDAYGRKKATLLAD+VFT GAI+MAAAP+PYVLI GRLLVGLGV
Sbjct: 77 MALVGAMIGAAAGGWINDAYGRKKATLLADIVFTIGAIVMAAAPNPYVLIAGRLLVGLGV 136
Query: 61 GIASVTAPVYIAEASPSEVRGGLVSTNVLMITSGQFLSYLVNLAFTEVPGTWRWMLGVSA 120
G+ASVTAPVYIAEASPSE+RGGLVSTNVLMIT GQFLSYLVNLAFTEVPGTWRWMLGVS
Sbjct: 137 GVASVTAPVYIAEASPSEIRGGLVSTNVLMITGGQFLSYLVNLAFTEVPGTWRWMLGVSG 196
Query: 121 VPAIIQFVLMLFMPESPRWLFMKSDKEKAILVLSKIYDIARLEDEIDHLSAAAEEELRKK 180
VP++IQF LMLF+PESPRWL++K +K +AI VLSKIYD RLEDEID L+AAAEEE ++K
Sbjct: 197 VPSVIQFSLMLFLPESPRWLYLKGNKSQAISVLSKIYDPERLEDEIDQLAAAAEEERQRK 256
Query: 181 KTVRYLDVFKSKEIRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQMAGFQSNQLALLLSL 240
VRY DVFKSKE+RLAFLAGAGLQAFQQFTGINTVMYYSPTIVQMAGF+SNQLALLLSL
Sbjct: 257 NAVRYRDVFKSKEMRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQMAGFRSNQLALLLSL 316
Query: 241 AVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGWIA 300
VA NA GTIVGIYLIDH GR++LALSSL+GV +SLV+LS +F SS S SG+YGW+A
Sbjct: 317 IVAAMNAAGTIVGIYLIDHVGRRRLALSSLSGVFVSLVILSGSFYMHSSGSGSGLYGWLA 376
Query: 301 VIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAEL 360
V+GLALYIA F+PGMGPVPW +NSE+YPE YRGICGGMSAT+NWISNLIVAQ+FL+VA
Sbjct: 377 VLGLALYIACFSPGMGPVPWAVNSEIYPEAYRGICGGMSATINWISNLIVAQSFLSVATA 436
Query: 361 VGTGATFLILAGIAVLAVVFVILFVPETQGLTFLEVEQMWKERAWGSSLNTESLLEHGNS 420
VGTGATFLILAG+AV+A VFVI+F+PET+GLTF E++Q+WKERA G S E LLE +
Sbjct: 437 VGTGATFLILAGVAVVAFVFVIVFLPETKGLTFEEMDQLWKERARGHS-RGEGLLEDQDD 495
Query: 421 S 421
+
Sbjct: 496 N 496
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357445131|ref|XP_003592843.1| hypothetical protein MTR_1g116660 [Medicago truncatula] gi|355481891|gb|AES63094.1| hypothetical protein MTR_1g116660 [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 617 bits (1592), Expect = e-174, Method: Compositional matrix adjust.
Identities = 299/400 (74%), Positives = 349/400 (87%), Gaps = 1/400 (0%)
Query: 15 WINDAYGRKKATLLADVVFTAGAIIMAAAPDPYVLILGRLLVGLGVGIASVTAPVYIAEA 74
WINDAYGRKKATL+ADV+F GAI MAAAPDPY+LI+GRLLVGLGVGIASVTAPVYIAEA
Sbjct: 97 WINDAYGRKKATLIADVIFIIGAIGMAAAPDPYILIIGRLLVGLGVGIASVTAPVYIAEA 156
Query: 75 SPSEVRGGLVSTNVLMITSGQFLSYLVNLAFTEVPGTWRWMLGVSAVPAIIQFVLMLFMP 134
SPSE+RG LVSTN LMITSGQ LSY+VNLAFT VPGTWRWMLGVSAVPA++QF+LMLF+P
Sbjct: 157 SPSEIRGSLVSTNSLMITSGQLLSYIVNLAFTRVPGTWRWMLGVSAVPALVQFILMLFLP 216
Query: 135 ESPRWLFMKSDKEKAILVLSKIYDIARLEDEIDHLSAAAEEELRKKKTVRYLDVFKSKEI 194
ESPRWLFMK+ K +A+ V+S IYD+ARLEDE+D L+A AE++ +K V++ DVFKSKEI
Sbjct: 217 ESPRWLFMKNRKNEAVDVISNIYDLARLEDEVDFLTAEAEQDRQKNMNVKFKDVFKSKEI 276
Query: 195 RLAFLAGAGLQAFQQFTGINTVMYYSPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGI 254
RLAF+ GAGL FQQFTGINTVMYYSPTIVQMAGFQS +LAL +SL VA NAVGT++GI
Sbjct: 277 RLAFMVGAGLMVFQQFTGINTVMYYSPTIVQMAGFQSKELALQISLFVAAMNAVGTVLGI 336
Query: 255 YLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLALYIAFFAPG 314
YLIDH GRK LAL SL GV SLVLLS AF + +SA++S GW+AV+GL LYIAFF+PG
Sbjct: 337 YLIDHAGRKILALCSLGGVFTSLVLLSVAFSNQTSAAASNATGWLAVLGLILYIAFFSPG 396
Query: 315 MGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELVGTGATFLILAGIA 374
MGPVPW +NSE+YP++YRGICGGMSATV W+SNLIV+QTFL+VAE +GTG TFLILA I
Sbjct: 397 MGPVPWAMNSEIYPKEYRGICGGMSATVCWVSNLIVSQTFLSVAEALGTGPTFLILAVIT 456
Query: 375 VLAVVFVILFVPETQGLTFLEVEQMWKERAW-GSSLNTES 413
VLA +FV+L+VPET+GLTF EVE +WKERAW G+++N S
Sbjct: 457 VLAFLFVLLYVPETKGLTFDEVELIWKERAWGGTNINNNS 496
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 421 | ||||||
| TAIR|locus:2058193 | 509 | INT1 "inositol transporter 1" | 1.0 | 0.827 | 0.670 | 1.3e-146 | |
| TAIR|locus:2009832 | 580 | INT2 "inositol transporter 2" | 0.674 | 0.489 | 0.498 | 2.9e-99 | |
| TAIR|locus:2130689 | 582 | INT4 "inositol transporter 4" | 0.674 | 0.487 | 0.451 | 8e-89 | |
| TAIR|locus:2058774 | 580 | INT3 "nositol transporter 3" [ | 0.674 | 0.489 | 0.441 | 2.4e-87 | |
| MGI|MGI:2146030 | 637 | Slc2a13 "solute carrier family | 0.672 | 0.444 | 0.368 | 1.1e-66 | |
| UNIPROTKB|Q96QE2 | 648 | SLC2A13 "Proton myo-inositol c | 0.669 | 0.435 | 0.374 | 1.4e-66 | |
| RGD|621814 | 637 | Slc2a13 "solute carrier family | 0.674 | 0.445 | 0.362 | 1.8e-66 | |
| UNIPROTKB|E1BML6 | 648 | SLC2A13 "Uncharacterized prote | 0.669 | 0.435 | 0.370 | 2.9e-66 | |
| UNIPROTKB|F1PGX9 | 652 | SLC2A13 "Uncharacterized prote | 0.667 | 0.430 | 0.372 | 2e-65 | |
| ZFIN|ZDB-GENE-090812-1 | 546 | slc2a13b "solute carrier famil | 0.515 | 0.397 | 0.390 | 1.9e-56 |
| TAIR|locus:2058193 INT1 "inositol transporter 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1432 (509.1 bits), Expect = 1.3e-146, P = 1.3e-146
Identities = 289/431 (67%), Positives = 319/431 (74%)
Query: 1 MALVGAIVGAASGGWINDAYGRKKATLLADVVFTAGAIIMAAAPDPYXXXXXXXXXXXXX 60
MALVGA++GAA+GGWIND YGRKKATL ADVVF AGAI+MAAAPDPY
Sbjct: 79 MALVGAMIGAAAGGWINDYYGRKKATLFADVVFAAGAIVMAAAPDPYVLISGRLLVGLGV 138
Query: 61 XXASVTAPVYIAEASPSEVRGGLVSTNVLMITSGQFLSYLVNLAFTEVPGTWRWMLGVSA 120
ASVTAPVYIAEASPSEVRGGLVSTNVLMIT GQFLSYLVN AFT+VPGTWRWMLGVS
Sbjct: 139 GVASVTAPVYIAEASPSEVRGGLVSTNVLMITGGQFLSYLVNSAFTQVPGTWRWMLGVSG 198
Query: 121 VPAIIQFVLMLFMPESPRWLFMKSDKEKAILVLSKIYDIARLEDEIDHLSAAAEEELRKK 180
VPA+IQF+LMLFMPESPRWLFMK+ K +AI VL++ YDI+RLEDEIDHLSAA EEE ++K
Sbjct: 199 VPAVIQFILMLFMPESPRWLFMKNRKAEAIQVLARTYDISRLEDEIDHLSAAEEEEKQRK 258
Query: 181 KTVRYLDVFKSKEIRXXXXXXXXXXXXXXXXXINTVMYYSPTIVQMAGFQSNQXXXXXXX 240
+TV YLDVF+SKE+R INTVMYYSPTIVQMAGF SNQ
Sbjct: 259 RTVGYLDVFRSKELRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQMAGFHSNQLALFLSL 318
Query: 241 XXXGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFIXXXXXXXXX-VYGWI 299
NA GT+VGIY IDH GRKKLALSSL GVIISL++LS +F +YGW+
Sbjct: 319 IVAAMNAAGTVVGIYFIDHCGRKKLALSSLFGVIISLLILSVSFFKQSETSSDGGLYGWL 378
Query: 300 AVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAE 359
AV+GLALYI FFAPGMGPVPWT+NSE+YP+QYRGICGGMSATVNWISNLIVAQTFLT+AE
Sbjct: 379 AVLGLALYIVFFAPGMGPVPWTVNSEIYPQQYRGICGGMSATVNWISNLIVAQTFLTIAE 438
Query: 360 LVGTGATXXXXXXXXXXXXXXXXXXXPETQGLTFLEVEQMWKERA------WGSSL---N 410
GTG T PETQGLTF EVEQ+WKERA WGSS N
Sbjct: 439 AAGTGMTFLILAGIAVLAVIFVIVFVPETQGLTFSEVEQIWKERAYGNISGWGSSSDSNN 498
Query: 411 TESLLEHGNSS 421
E LLE G+ S
Sbjct: 499 MEGLLEQGSQS 509
|
|
| TAIR|locus:2009832 INT2 "inositol transporter 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 703 (252.5 bits), Expect = 2.9e-99, Sum P(2) = 2.9e-99
Identities = 143/287 (49%), Positives = 186/287 (64%)
Query: 1 MALVGAIVGAASGGWINDAYGRKKATLLADVVFTAGAIIMAAAPDPYXXXXXXXXXXXXX 60
MA+ GAIVGAA GGW ND GR+ A L+AD +F GAIIMAAAP+P
Sbjct: 76 MAVAGAIVGAAIGGWANDKLGRRSAILMADFLFLLGAIIMAAAPNPSLLVVGRVFVGLGV 135
Query: 61 XXASVTAPVYIAEASPSEVRGGLVSTNVLMITSGQFLSYLVNLAFTEVPGTWRWMLGVSA 120
AS+TAP+YI+EASP+++RG LVSTN +IT GQFLSYL+NLAFT+V GTWRWMLG++
Sbjct: 136 GMASMTAPLYISEASPAKIRGALVSTNGFLITGGQFLSYLINLAFTDVTGTWRWMLGIAG 195
Query: 121 VPAIIQFVLMLFMPESPRWLFMKSDKEKAILVLSKIYDIARLEDEIDHLSAAAEEELRKK 180
+PA++QFVLM +PESPRWL+ K +E+A +L +IY +E EI L + E E+ ++
Sbjct: 196 IPALLQFVLMFTLPESPRWLYRKGREEEAKAILRRIYSAEDVEQEIRALKDSVETEILEE 255
Query: 181 ---KTVRYLDVFKSKEIRXXXXXXXXXXXXXXXXXINTVMYYSPTIVQMAGFQSNQXXXX 237
+ + + + K+K +R INTVMYYSPTIVQ+AGF SN+
Sbjct: 256 GSSEKINMIKLCKAKTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLAGFASNRTALL 315
Query: 238 XXXXXXGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAF 284
G NA G+I+ IY ID GRKKL + SL GVIISL +L+ F
Sbjct: 316 LSLVTAGLNAFGSIISIYFIDRIGRKKLLIISLFGVIISLGILTGVF 362
|
|
| TAIR|locus:2130689 INT4 "inositol transporter 4" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 654 (235.3 bits), Expect = 8.0e-89, Sum P(2) = 8.0e-89
Identities = 131/290 (45%), Positives = 179/290 (61%)
Query: 1 MALVGAIVGAASGGWINDAYGRKKATLLADVVFTAGAIIMAAAPDPYXXXXXXXXXXXXX 60
MA+ GAIVGAA GGWIND +GR+ + L+ADV+F GAI+MA AP P+
Sbjct: 75 MAVAGAIVGAAVGGWINDKFGRRMSILIADVLFLIGAIVMAFAPAPWVIIVGRIFVGFGV 134
Query: 61 XXASVTAPVYIAEASPSEVRGGLVSTNVLMITSGQFLSYLVNLAFTEVPGTWRWMLGVSA 120
AS+T+P+YI+EASP+ +RG LVSTN L+IT GQF SYL+NLAF PGTWRWMLGV+
Sbjct: 135 GMASMTSPLYISEASPARIRGALVSTNGLLITGGQFFSYLINLAFVHTPGTWRWMLGVAG 194
Query: 121 VPAIIQFVLMLFMPESPRWLFMKSDKEKAILVLSKIYDIARLEDEIDHLSAAAEEELRKK 180
VPAI+QFVLML +PESPRWL+ K ++ +L +IY +E E++ L + E E +
Sbjct: 195 VPAIVQFVLMLSLPESPRWLYRKDRIAESRAILERIYPADEVEAEMEALKLSVEAEKADE 254
Query: 181 KTV------RYLDVFKSKEIRXXXXXXXXXXXXXXXXXINTVMYYSPTIVQMAGFQSNQX 234
+ + F + +R INTVMYYSP+IVQ AG+ SN+
Sbjct: 255 AIIGDSFSAKLKGAFGNPVVRRGLAAGITVQVAQQFVGINTVMYYSPSIVQFAGYASNKT 314
Query: 235 XXXXXXXXXGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAF 284
G NA+G+IV + +D +GR+KL + S+ G+I L++L+ F
Sbjct: 315 AMALSLITSGLNALGSIVSMMFVDRYGRRKLMIISMFGIIACLIILATVF 364
|
|
| TAIR|locus:2058774 INT3 "nositol transporter 3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 628 (226.1 bits), Expect = 2.4e-87, Sum P(2) = 2.4e-87
Identities = 128/290 (44%), Positives = 174/290 (60%)
Query: 1 MALVGAIVGAASGGWINDAYGRKKATLLADVVFTAGAIIMAAAPDPYXXXXXXXXXXXXX 60
M + GAIVGAA GGW ND +GR+ + L+ADV+F GA++M A P+
Sbjct: 74 MTVAGAIVGAAIGGWYNDKFGRRMSVLIADVLFLLGALVMVIAHAPWVIILGRLLVGFGV 133
Query: 61 XXASVTAPVYIAEASPSEVRGGLVSTNVLMITSGQFLSYLVNLAFTEVPGTWRWMLGVSA 120
AS+T+P+YI+E SP+ +RG LVSTN L+IT GQFLSYL+NLAF PGTWRWMLGVSA
Sbjct: 134 GMASMTSPLYISEMSPARIRGALVSTNGLLITGGQFLSYLINLAFVHTPGTWRWMLGVSA 193
Query: 121 VPAIIQFVLMLFMPESPRWLFMKSDKEKAILVLSKIYDIARLEDEIDHLSAAAEEELRKK 180
+PAIIQF LML +PESPRWL+ K ++ +L +IY +E EI L + E +
Sbjct: 194 IPAIIQFCLMLTLPESPRWLYRNDRKAESRDILERIYPAEMVEAEIAALKESVRAETADE 253
Query: 181 KTV--RYLDVFK----SKEIRXXXXXXXXXXXXXXXXXINTVMYYSPTIVQMAGFQSNQX 234
+ + D + + +R INTVMYYSPTI+Q AG+ SN+
Sbjct: 254 DIIGHTFSDKLRGALSNPVVRHGLAAGITVQVAQQFVGINTVMYYSPTILQFAGYASNKT 313
Query: 235 XXXXXXXXXGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAF 284
G NAVG++V + +D +GR+KL + S+ G+I LV+L+ F
Sbjct: 314 AMALALITSGLNAVGSVVSMMFVDRYGRRKLMIISMFGIITCLVILAAVF 363
|
|
| MGI|MGI:2146030 Slc2a13 "solute carrier family 2 (facilitated glucose transporter), member 13" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 475 (172.3 bits), Expect = 1.1e-66, Sum P(2) = 1.1e-66
Identities = 106/288 (36%), Positives = 160/288 (55%)
Query: 2 ALVGAIVGAASGGWINDAYGRKKATLLADVVFTAGAIIMAAAPDPYXXXXXXXXXXXXXX 61
A+ A V A +GG +N A GR+ A LLA + T G+ ++AAA +
Sbjct: 116 AVGAAAVAALAGGALNGALGRRSAILLASALCTVGSAVLAAAANKETLLAGRLVVGLGIG 175
Query: 62 XASVTAPVYIAEASPSEVRGGLVSTNVLMITSGQFLSYLVNLAFTEVPGT-WRWMLGVSA 120
AS+T PVYIAE SP +RG LV+ N L IT GQF + +V+ AF+ + WR+MLG++A
Sbjct: 176 IASMTVPVYIAEVSPPNLRGRLVTINTLFITGGQFFASVVDGAFSYLQKDGWRYMLGLAA 235
Query: 121 VPAIIQFVLMLFMPESPRWLFMKSDKEKAILVLSKIYDIARLEDEIDHLSAAAEEELRKK 180
+PA+IQF+ LF+PESPRWL K +KA +LS++ +++E D + + EEE K+
Sbjct: 236 IPAVIQFLGFLFLPESPRWLIQKGQTQKARRILSQMRGNQTIDEEYDSIRNSIEEE-EKE 294
Query: 181 KTVR---YLDVFKSKEIRXXXXXXXXXXXXXXXXXINTVMYYSPTIVQMAGFQSNQXXXX 237
T + R INT+MYYS TI+QM+G + ++
Sbjct: 295 ATAAGPIICRMLSYPPTRRALVVGCGLQMFQQLSGINTIMYYSATILQMSGVEDDRLAIW 354
Query: 238 XXXXXXGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFI 285
TN + T+VG++L++ GR+KL SLAG ++L++L+ F+
Sbjct: 355 LASITAFTNFIFTLVGVWLVEKVGRRKLTFGSLAGTTVALIILALGFL 402
|
|
| UNIPROTKB|Q96QE2 SLC2A13 "Proton myo-inositol cotransporter" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 479 (173.7 bits), Expect = 1.4e-66, Sum P(2) = 1.4e-66
Identities = 107/286 (37%), Positives = 161/286 (56%)
Query: 4 VGAI-VGAASGGWINDAYGRKKATLLADVVFTAGAIIMAAAPDPYXXXXXXXXXXXXXXX 62
VGA V A +GG +N +GR+ A LLA +FTAG+ ++AAA +
Sbjct: 128 VGAAAVSALAGGALNGVFGRRAAILLASALFTAGSAVLAAANNKETLLAGRLVVGLGIGI 187
Query: 63 ASVTAPVYIAEASPSEVRGGLVSTNVLMITSGQFLSYLVNLAFTEVPGT-WRWMLGVSAV 121
AS+T PVYIAE SP +RG LV+ N L IT GQF + +V+ AF+ + WR+MLG++AV
Sbjct: 188 ASMTVPVYIAEVSPPNLRGRLVTINTLFITGGQFFASVVDGAFSYLQKDGWRYMLGLAAV 247
Query: 122 PAIIQFVLMLFMPESPRWLFMKSDKEKAILVLSKIYDIARLEDEIDHLSAAAEEELRKKK 181
PA+IQF LF+PESPRWL K +KA +LS++ +++E D + EEE ++
Sbjct: 248 PAVIQFFGFLFLPESPRWLIQKGQTQKARRILSQMRGNQTIDEEYDSIKNNIEEEEKEVG 307
Query: 182 TVRYL--DVFKSKEIRXXXXXXXXXXXXXXXXXINTVMYYSPTIVQMAGFQSNQXXXXXX 239
+ + + R INT+MYYS TI+QM+G + ++
Sbjct: 308 SAGPVICRMLSYPPTRRALIVGCGLQMFQQLSGINTIMYYSATILQMSGVEDDRLAIWLA 367
Query: 240 XXXXGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFI 285
TN + T+VG++L++ GR+KL SLAG ++L++L+ F+
Sbjct: 368 SVTAFTNFIFTLVGVWLVEKVGRRKLTFGSLAGTTVALIILALGFV 413
|
|
| RGD|621814 Slc2a13 "solute carrier family 2 (facilitated glucose transporter), member 13" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 473 (171.6 bits), Expect = 1.8e-66, Sum P(2) = 1.8e-66
Identities = 104/287 (36%), Positives = 159/287 (55%)
Query: 2 ALVGAIVGAASGGWINDAYGRKKATLLADVVFTAGAIIMAAAPDPYXXXXXXXXXXXXXX 61
A+ A V A +GG +N A GR+ A LLA + T G+ ++AAA +
Sbjct: 116 AVGAAAVAALAGGALNGALGRRSAILLASALCTVGSAVLAAAANKETLLAGRLVVGLGIG 175
Query: 62 XASVTAPVYIAEASPSEVRGGLVSTNVLMITSGQFLSYLVNLAFTEVPGT-WRWMLGVSA 120
AS+T PVYIAE SP +RG LV+ N L IT GQF + +V+ AF+ + WR+MLG++A
Sbjct: 176 IASMTVPVYIAEVSPPNLRGRLVTINTLFITGGQFFASVVDGAFSYLQKDGWRYMLGLAA 235
Query: 121 VPAIIQFVLMLFMPESPRWLFMKSDKEKAILVLSKIYDIARLEDEIDHLSAAAEEELRKK 180
+PA+IQF+ LF+PESPRWL K +KA +LS++ +++E D + + EEE ++
Sbjct: 236 IPAVIQFLGFLFLPESPRWLIQKGQTQKARRILSQMRGNQTIDEEYDSIRNSIEEEEKEA 295
Query: 181 KTVRYL--DVFKSKEIRXXXXXXXXXXXXXXXXXINTVMYYSPTIVQMAGFQSNQXXXXX 238
+ + R INT+MYYS TI+QM+G + ++
Sbjct: 296 SAAGPIICRMLSYPPTRRALAVGCGLQMFQQLSGINTIMYYSATILQMSGVEDDRLAIWL 355
Query: 239 XXXXXGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFI 285
TN + T+VG++L++ GR+KL SLAG ++L +L+ F+
Sbjct: 356 ASITAFTNFIFTLVGVWLVEKVGRRKLTFGSLAGTTVALTILALGFL 402
|
|
| UNIPROTKB|E1BML6 SLC2A13 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 477 (173.0 bits), Expect = 2.9e-66, Sum P(2) = 2.9e-66
Identities = 106/286 (37%), Positives = 161/286 (56%)
Query: 4 VGAI-VGAASGGWINDAYGRKKATLLADVVFTAGAIIMAAAPDPYXXXXXXXXXXXXXXX 62
VGA V A +GG +N +GR+ A LLA +FTAG+ ++AAA +
Sbjct: 128 VGAAAVSALAGGALNGVFGRRAAILLASALFTAGSAVLAAANNKETLLAGRLVVGLGIGI 187
Query: 63 ASVTAPVYIAEASPSEVRGGLVSTNVLMITSGQFLSYLVNLAFTEVPGT-WRWMLGVSAV 121
AS+T PVYIAE SP +RG LV+ N L IT GQF + +V+ AF+ + WR+MLG++A+
Sbjct: 188 ASMTVPVYIAEVSPPNLRGRLVTINTLFITGGQFFASVVDGAFSYLQKDGWRYMLGLAAI 247
Query: 122 PAIIQFVLMLFMPESPRWLFMKSDKEKAILVLSKIYDIARLEDEIDHLSAAAEEELRKKK 181
PA+IQF LF+PESPRWL K +KA +LS++ +++E D + EEE ++
Sbjct: 248 PAVIQFFGFLFLPESPRWLIQKGQTQKARRILSQMRGNQTIDEEYDSIKNNIEEEEKEVG 307
Query: 182 TVRYL--DVFKSKEIRXXXXXXXXXXXXXXXXXINTVMYYSPTIVQMAGFQSNQXXXXXX 239
+ + + R INT+MYYS TI+QM+G + ++
Sbjct: 308 SAGPVICRMLSYPPTRRALIVGCGLQMFQQLSGINTIMYYSATILQMSGVEDDRLAIWLA 367
Query: 240 XXXXGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFI 285
TN + T+VG++L++ GR+KL SLAG ++L++L+ F+
Sbjct: 368 SITAFTNFIFTLVGVWLVEKVGRRKLTFGSLAGTTVALIILALGFL 413
|
|
| UNIPROTKB|F1PGX9 SLC2A13 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 469 (170.2 bits), Expect = 2.0e-65, Sum P(2) = 2.0e-65
Identities = 107/287 (37%), Positives = 161/287 (56%)
Query: 4 VGAI-VGAASGGWINDAYGRKKATLLADVVFTAGAIIMAAAPDPYXXXXXXXXXXXXXXX 62
VGA V A +GG +N +GR+ A LLA +F AG+ ++AAA +
Sbjct: 132 VGAAAVSALAGGALNGVFGRRAAILLASALFAAGSAVLAAAGNRETLLAGRLVVGLGIGI 191
Query: 63 ASVTAPVYIAEASPSEVRGGLVSTNVLMITSGQFLSYLVNLAFTEVPGT-WRWMLGVSAV 121
AS+T PVYIAE SP +RG LV+ N L IT GQF + +V+ AF+ + WR+MLG++A+
Sbjct: 192 ASMTVPVYIAEVSPPNLRGRLVTINTLFITGGQFFASVVDGAFSYLQKDGWRYMLGLAAI 251
Query: 122 PAIIQFVLMLFMPESPRWLFMKSDKEKAILVLSKIYDIARLEDEIDHLSAAAEEELRKKK 181
PA+IQF LF+PESPRWL K +KA +LS++ +++E D + EEE ++
Sbjct: 252 PAVIQFFGFLFLPESPRWLIQKGQTQKARRILSQMRGNQTIDEEYDSIKNNIEEEEKEVG 311
Query: 182 T---VRYLDVFKSKEIRXXXXXXXXXXXXXXXXXINTVMYYSPTIVQMAGFQSNQXXXXX 238
+ V Y + R INT+MYYS TI+QM+G + ++
Sbjct: 312 SAGPVIYR-MLSYPPTRRALIVGCGLQMFQQLSGINTIMYYSATILQMSGVEDDRLAIWL 370
Query: 239 XXXXXGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFI 285
TN + T+VG++L++ GR+KL SLAG ++L++L+ F+
Sbjct: 371 ASVTAFTNFIFTLVGVWLVEKVGRRKLTFGSLAGTTVALLVLALGFL 417
|
|
| ZFIN|ZDB-GENE-090812-1 slc2a13b "solute carrier family 2 (facilitated glucose transporter), member 13b" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 362 (132.5 bits), Expect = 1.9e-56, Sum P(2) = 1.9e-56
Identities = 86/220 (39%), Positives = 121/220 (55%)
Query: 4 VGAI-VGAASGGWINDAYGRKKATLLADVVFTAGAIIMAAAPDPYXXXXXXXXXXXXXXX 62
VGA V A +GG++N +GR+ LLA +F AG II++ A +
Sbjct: 82 VGAAAVSALAGGFLNGRFGRRVCILLASFIFCAGGIILSVARNKEALLCGRLTVGLGLGI 141
Query: 63 ASVTAPVYIAEASPSEVRGGLVSTNVLMITSGQFLSYLVNLAFTEVPGT-WRWMLGVSAV 121
AS+T PVYIAE SP ++RG LV+ N L IT GQF++ +V+ AF+ +P WR+MLG+S V
Sbjct: 142 ASMTVPVYIAEVSPPDLRGQLVTVNTLFITGGQFIASVVDGAFSYLPHDGWRFMLGLSVV 201
Query: 122 PAIIQFVLMLFMPESPRWLFMKSDKEKAILVLSKIYDIARLEDEIDHLSAAAEEELRKKK 181
PA +QF+ LF+PESPRWL K + A+LVL +I +E+E + + + +EE R
Sbjct: 202 PAALQFLGFLFLPESPRWLLQKGFTQNALLVLRQIRGDVDVEEEFESIRCSIQEEQRDVA 261
Query: 182 TVRYL-DVFKSKEIRXXXXXXXXXXXXXXXXXINTVMYYS 220
L + S R INTV+YYS
Sbjct: 262 GGPVLWRMLASPPARRALIVGCGLQMFQQLAGINTVIYYS 301
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| C0SPB2 | YWTG_BACSU | No assigned EC number | 0.3796 | 0.9216 | 0.8490 | yes | no |
| O52733 | XYLT_LACBR | No assigned EC number | 0.3465 | 0.9263 | 0.8533 | yes | no |
| Q8VZR6 | INT1_ARATH | No assigned EC number | 0.8074 | 1.0 | 0.8271 | yes | no |
| P0AEP2 | GALP_ECOL6 | No assigned EC number | 0.3663 | 0.9026 | 0.8189 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 421 | |||
| pfam00083 | 449 | pfam00083, Sugar_tr, Sugar (and other) transporter | 6e-99 | |
| TIGR00879 | 481 | TIGR00879, SP, MFS transporter, sugar porter (SP) | 3e-96 | |
| PRK10077 | 479 | PRK10077, xylE, D-xylose transporter XylE; Provisi | 9e-71 | |
| TIGR00898 | 505 | TIGR00898, 2A0119, cation transport protein | 1e-26 | |
| TIGR00895 | 398 | TIGR00895, 2A0115, benzoate transport | 5e-17 | |
| TIGR00893 | 399 | TIGR00893, 2A0114, D-galactonate transporter | 8e-16 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 2e-14 | |
| TIGR00887 | 502 | TIGR00887, 2A0109, phosphate:H+ symporter | 1e-13 | |
| pfam07690 | 346 | pfam07690, MFS_1, Major Facilitator Superfamily | 4e-13 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 3e-12 | |
| TIGR00883 | 394 | TIGR00883, 2A0106, metabolite-proton symporter | 1e-10 | |
| TIGR01299 | 742 | TIGR01299, synapt_SV2, synaptic vesicle protein SV | 2e-08 | |
| TIGR00880 | 141 | TIGR00880, 2_A_01_02, Multidrug resistance protein | 5e-08 | |
| PRK11551 | 406 | PRK11551, PRK11551, putative 3-hydroxyphenylpropio | 5e-08 | |
| COG0738 | 422 | COG0738, FucP, Fucose permease [Carbohydrate trans | 1e-07 | |
| PRK03893 | 496 | PRK03893, PRK03893, putative sialic acid transport | 1e-07 | |
| TIGR00891 | 405 | TIGR00891, 2A0112, putative sialic acid transporte | 1e-07 | |
| COG2814 | 394 | COG2814, AraJ, Arabinose efflux permease [Carbohyd | 2e-07 | |
| PRK12307 | 426 | PRK12307, PRK12307, putative sialic acid transport | 2e-06 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 5e-06 | |
| PRK10406 | 432 | PRK10406, PRK10406, alpha-ketoglutarate transporte | 2e-05 | |
| COG2807 | 395 | COG2807, CynX, Cyanate permease [Inorganic ion tra | 7e-05 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 2e-04 | |
| TIGR00881 | 379 | TIGR00881, 2A0104, phosphoglycerate transporter fa | 6e-04 | |
| pfam07690 | 346 | pfam07690, MFS_1, Major Facilitator Superfamily | 0.002 |
| >gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter | Back alignment and domain information |
|---|
Score = 302 bits (775), Expect = 6e-99
Identities = 150/404 (37%), Positives = 238/404 (58%), Gaps = 12/404 (2%)
Query: 1 MALVGAIVGAASGGWINDAYGRKKATLLADVVFTAGAIIMAAAPD--PYVLILGRLLVGL 58
+ VG ++G+ G + D +GRKK+ L+ +V+F GA++ A Y+LI+GR++VGL
Sbjct: 54 IFSVGCLIGSLFAGKLGDRFGRKKSLLIGNVLFVIGALLQGFAKGKSFYMLIVGRVIVGL 113
Query: 59 GVGIASVTAPVYIAEASPSEVRGGLVSTNVLMITSGQFLSYLVNLAFTEV--PGTWRWML 116
GVG SV P+YI+E +P ++RG L S L IT G ++ ++ L + WR L
Sbjct: 114 GVGGISVLVPMYISEIAPKKLRGALGSLYQLGITFGILVAAIIGLGLNKYSNSDGWRIPL 173
Query: 117 GVSAVPAIIQFVLMLFMPESPRWLFMKSDKEKAILVLSKIYDIARLEDEIDHLSAAAEEE 176
G+ VPAI+ + +LF+PESPRWL +K E+A VL+K+ ++ ++ EI + E
Sbjct: 174 GLQFVPAILLLIGLLFLPESPRWLVLKGKLEEARAVLAKLRGVSDVDQEIQEEKDSLERS 233
Query: 177 LRKKKTVRYLDVFKSKEIRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQMAGFQSNQLAL 236
+ + +L++F+ K +R L G LQ FQQ TGIN + YYSPTI + G +L
Sbjct: 234 -VEAEKASWLELFRGKTVRQRLLMGVMLQIFQQLTGINAIFYYSPTIFETLGLSD---SL 289
Query: 237 LLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVY 296
L+++ V N V T + I+L+D FGR+ L L AG+ I ++L A + G + S
Sbjct: 290 LVTIIVGVVNFVFTFIAIFLVDRFGRRPLLLLGAAGMAICFLVLGVALL-GVAKSKGAGI 348
Query: 297 GWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLT 356
+A++ + L+IAFFA G GPVPW + SE++P R ++ NW++N ++ F
Sbjct: 349 --VAIVFILLFIAFFALGWGPVPWVIVSELFPLGVRPKAMAIATAANWLANFLIGFLFPI 406
Query: 357 VAELVGTGATFLILAGIAVLAVVFVILFVPETQGLTFLEVEQMW 400
+ +G G FL+ AG+ VL ++FV FVPET+G T E+++++
Sbjct: 407 ITGAIG-GYVFLVFAGLLVLFILFVFFFVPETKGRTLEEIDELF 449
|
Length = 449 |
| >gnl|CDD|233165 TIGR00879, SP, MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Score = 296 bits (760), Expect = 3e-96
Identities = 157/406 (38%), Positives = 226/406 (55%), Gaps = 13/406 (3%)
Query: 1 MALVGAIVGAASGGWINDAYGRKKATLLADVVFTAGAIIMAAAPDPY---VLILGRLLVG 57
+ LVG +GA GW++D +GRKK+ L+ ++F GAI+M A +LI+GR+L+G
Sbjct: 79 IFLVGGFIGALFAGWLSDRFGRKKSLLIIALLFVIGAILMGLAAFALSVEMLIVGRVLLG 138
Query: 58 LGVGIASVTAPVYIAEASPSEVRGGLVSTNVLMITSGQFLSYLVNLA--FTEVPGTWRWM 115
+GVGIAS P+Y++E +P +RG L S L IT G ++Y WR
Sbjct: 139 IGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFGSGKVSLNNTLGWRIP 198
Query: 116 LGVSAVPAIIQFVLMLFMPESPRWLFMKSDKEKAILVLSKIYD----IARLEDEIDHLSA 171
LG+ +PA + F+ + F+PESPRWL K E+A L+++ L DE++ +
Sbjct: 199 LGLQLIPAGLLFLGLFFLPESPRWLVGKGRVEEARKSLARLRGTSGEDKELLDELELIDI 258
Query: 172 AAEEELRKKKTVRYLDVFKSKE-IRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQMAGFQ 230
E R + + +F S IR G LQ FQQFTGIN +MYYSPTI + AG
Sbjct: 259 KRSIEKRSVQP-SWGSLFSSTRRIRRRLFLGVVLQWFQQFTGINAIMYYSPTIFENAGV- 316
Query: 231 SNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSA 290
S A L+S+ V N T V I+L+D FGR+ L L AG+ I L +L S +
Sbjct: 317 STDHAFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGASFVTG 376
Query: 291 SSSGVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIV 350
SS G +A++ + L+IAFFA G GPVPW + SE++P R ++ NW++N IV
Sbjct: 377 SSKSS-GNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIV 435
Query: 351 AQTFLTVAELVGTGATFLILAGIAVLAVVFVILFVPETQGLTFLEV 396
F T+ E +G G F+ G+ VL ++FV F+PET+G T E+
Sbjct: 436 GFLFPTMLESIGVGGVFIFFGGLNVLGLIFVYFFLPETKGRTLEEI 481
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 481 |
| >gnl|CDD|182225 PRK10077, xylE, D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Score = 230 bits (588), Expect = 9e-71
Identities = 134/429 (31%), Positives = 215/429 (50%), Gaps = 42/429 (9%)
Query: 2 ALVGAIVGAASGGWINDAYGRKKATLLADVVFTAGAI--------IMAAAPDPYVLILG- 52
AL+G I+G A GG+ ++ +GR+ + +A V+F A+ + PD +
Sbjct: 64 ALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEF 123
Query: 53 ---RLLVGLGVGIASVTAPVYIAEASPSEVRGGLVSTNVLMITSGQFLSYLVN------- 102
R++ G+GVG+AS+ +P+YIAE +P+ +RG LVS N I GQ + Y VN
Sbjct: 124 VIYRIIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLVVYFVNYFIARSG 183
Query: 103 -LAFTEVPGTWRWMLGVSAVPAIIQFVLMLFMPESPRWLFMKSDKEKAILVLSKIYDIAR 161
++ G WR+M A+PA++ +L+ F+PE+PR+L + +E+A +L KI
Sbjct: 184 DASWLNTDG-WRYMFASEAIPALLFLMLLYFVPETPRYLMSRGKQEQAEGILRKIMGNTL 242
Query: 162 LEDEIDHLSAAAEEELRKKKTVRYLDVFKSKEIRLAFLAGAGLQAFQQFTGINTVMYYSP 221
+ + + + +K + L + G L FQQF GIN V+YY+P
Sbjct: 243 ATQALQEIKHSLDH--GRKTGGKLLMFGV-----GVIVIGVMLSVFQQFVGINVVLYYAP 295
Query: 222 TIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLS 281
I + G S +ALL ++ V N T++ I +D FGRK L + G+ I + L
Sbjct: 296 EIFKTLG-ASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLG 354
Query: 282 WAFISGSSASSSGVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSAT 341
AF + + G +A++ + Y+A FA GPV W L SE++P RG ++
Sbjct: 355 TAFYTQAP-------GIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVA 407
Query: 342 VNWISNLIVAQTF------LTVAELVGTGATFLILAGIAVLAVVFVILFVPETQGLTFLE 395
WI+N V+ TF + G ++ I + VLA +F+ FVPET+G T E
Sbjct: 408 AQWIANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEE 467
Query: 396 VEQMWKERA 404
+E +W+
Sbjct: 468 MEALWEPET 476
|
Length = 479 |
| >gnl|CDD|233176 TIGR00898, 2A0119, cation transport protein | Back alignment and domain information |
|---|
Score = 111 bits (280), Expect = 1e-26
Identities = 110/400 (27%), Positives = 183/400 (45%), Gaps = 41/400 (10%)
Query: 4 VGAIVGAASGGWINDAYGRKKATLLADVVFTAGAIIMAAAPDPYVLILGRLLVGLGVGIA 63
VG ++G+ G+++D +GRKK LL+ +V ++ A +P+ V ++ RLLVG+G+G
Sbjct: 138 VGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVFLVFRLLVGMGIGGI 197
Query: 64 SVTAPVYIAEASPSEVRG--GLVSTNVLMITSGQFLSYLVNLAFTEVPGTWRWMLGVSAV 121
V A V E P + R G + + G L LV +P WRW+ ++
Sbjct: 198 WVQAVVLNTEFLPKKQRAIVGTLIQVFFSL--GLVLLPLVAYF---IPD-WRWLQLAVSL 251
Query: 122 PAIIQFVLMLFMPESPRWLFMKSDKEKAILVLSKIYDIARLEDEIDHLSAAAEEELR-KK 180
P + F+L F+PESPRWL + E+A+ +L +I I + + LS + E++L K
Sbjct: 252 PTFLFFLLSWFVPESPRWLISQGRIEEALKILQRIAKINGKKLPAEVLSLSLEKDLSSSK 311
Query: 181 KTVRYLDVFKSKEIRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQMAGFQSNQLALLLSL 240
K +LD+F++ +R L FT YY + + L L +S
Sbjct: 312 KQYSFLDLFRTPNLRKTTL----CLMMLWFT--TAFSYYGLVLDLGNLGGNIYLDLFISG 365
Query: 241 AVAGTNAVGTIVGIYLIDHFGRKK-LALSSLAGVIISLVLLSWAFISGSSASSSGVYGWI 299
V ++ + LID GR+ +A S L + L+LL F+ ++
Sbjct: 366 LV---ELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLL---FVPVD-------LYFL 412
Query: 300 AVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYR----GICGGMSATVNWISNLIVAQTFL 355
LA+ F + + +E+YP R G+C M+ + IS +V +L
Sbjct: 413 -RTALAVLGKFGITSAFQMVYLYTAELYPTVVRNLGVGVCSTMARVGSIISPFLV---YL 468
Query: 356 TVAELVGTGATFLILAGIAVLAVVFVILFVPETQGLTFLE 395
L ++ G+A+LA + LF+PET+G+ E
Sbjct: 469 GEKWLF---LPLVLFGGLALLAGILT-LFLPETKGVPLPE 504
|
[Transport and binding proteins, Cations and iron carrying compounds]. Length = 505 |
| >gnl|CDD|233175 TIGR00895, 2A0115, benzoate transport | Back alignment and domain information |
|---|
Score = 82.0 bits (203), Expect = 5e-17
Identities = 73/338 (21%), Positives = 132/338 (39%), Gaps = 31/338 (9%)
Query: 2 ALVGAIVGAASGGWINDAYGRKKATLLADVVFTAGAIIMAAAPDPYVLILGRLLVGLGVG 61
L+G GA G + D GR++ L + ++F+ ++ A A + L++ R L GLG+G
Sbjct: 61 GLIGMAFGALFFGPLADRIGRRRVLLWSILLFSVFTLLCALATNVTQLLILRFLAGLGLG 120
Query: 62 IASVTAPVYIAEASPSEVRGGLVST-----NVLMITSGQFLSYLVNLAFTEVPGTWRWML 116
++E +P RG V + G +L+ + WR +
Sbjct: 121 GLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVF------GWRSLF 174
Query: 117 GVSAV-PAIIQFVLMLFMPESPRWLFMKSDKEKAILVLSKIYDIARLEDEIDHLSAAAEE 175
V + P ++ +LM F+PES +L K E +++ I + E SA E+
Sbjct: 175 YVGGIAPLLLLLLLMRFLPESIDFLVSKRP-ETVRRIVNAIAPQMQAEA----QSALPEQ 229
Query: 176 ELRKKKTVRYLDVFKSKEIRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQMAGFQSNQLA 235
+ + + + L G+ + + P ++ GF + A
Sbjct: 230 KATQGTKRSVFKALFQGKTARITVLLWLLYFMLLV-GVYFLTNWLPKLMVELGFSLSLAA 288
Query: 236 LLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGV 295
+L G +G+I+ +L D G + AL L G + ++++ S F S + +
Sbjct: 289 TGGALFNFG-GVIGSIIFGWLADRLGPRVTALLLLLGAVFAVLVGSTLF------SPTLL 341
Query: 296 YGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRG 333
A+ G FF G + L + YP R
Sbjct: 342 LLLGAIAG------FFVNGGQSGLYALMALFYPTAIRA 373
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 398 |
| >gnl|CDD|233174 TIGR00893, 2A0114, D-galactonate transporter | Back alignment and domain information |
|---|
Score = 78.1 bits (193), Expect = 8e-16
Identities = 79/388 (20%), Positives = 144/388 (37%), Gaps = 35/388 (9%)
Query: 4 VGAIVGAASGGWINDAYGRKKATLLADVVFTAGAIIMAAAPDPYVLILGRLLVGLGVGIA 63
G +VG GGW+ D +G +K + V++ + A A L + R+L+G
Sbjct: 40 WGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFAGAYVSLYILRVLLGAAEAPF 99
Query: 64 SVTAPVYIAEASPSEVRGGLVSTNVLMITSGQ-FLSYLVNLAFTEVPGTWRWMLGVSAVP 122
+ +A P+ R VS G LV +W+W + V
Sbjct: 100 FPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIHF--SWQWAFIIEGVL 157
Query: 123 AIIQFVLMLFM----PESPRWLFMKSDKEKAILVLSKIYDIARLEDEIDHLSAAAEEELR 178
II VL L P+ +WL +++EK I+V L+ +
Sbjct: 158 GIIWGVLWLKFIPDPPQKAKWL---TEEEKYIVVGGL-------------LAEQQGKGPS 201
Query: 179 KKKTVRYLDVFKSKEIRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQMAGFQSNQLALLL 238
K + ++ K + + L + G+ + + PT + S A +
Sbjct: 202 TPKKYQIKELLKDRRVWGLALGQFLVNI-----GLGFFLTWFPTYLVQERGLSILEAGFM 256
Query: 239 SLAVAGTNAVGTIVGIYLIDHFGRKKLALS-SLAGVIISLVLLSWAFISGSSASSSGVYG 297
+ +G I+G L D R+ +L + II+ ++LS + + +
Sbjct: 257 ASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARKTAIIAGLVLSLLMFATNYVNIP---- 312
Query: 298 WIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTV 357
+ A+ +AL FF G G + W L S+ P G+ GG+ ++ + ++ +
Sbjct: 313 YAALALVAL--GFFGLGAGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVIGAI 370
Query: 358 AELVGTGATFLILAGIAVLAVVFVILFV 385
A G+ A L++ L L +
Sbjct: 371 AATTGSFAGALMVVAALALIGALSYLLL 398
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 399 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 73.9 bits (182), Expect = 2e-14
Identities = 39/134 (29%), Positives = 70/134 (52%), Gaps = 1/134 (0%)
Query: 1 MALVGAIVGAASGGWINDAYGRKKATLLADVVFTAGAIIMAAAPDPYVLILGRLLVGLGV 60
+G +G+ G+++D +GR++ LL ++F G++++A A ++L++GR L+GLG
Sbjct: 42 AFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLAFASSLWLLLVGRFLLGLGG 101
Query: 61 GIASVTAPVYIAEASPSEVRGGLVSTNVLMITSGQFLSYLVNLAFTEVPGTWRWMLGVSA 120
G A IAE P + RG + G L L+ E G WRW+ + A
Sbjct: 102 GALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAESLG-WRWLFLILA 160
Query: 121 VPAIIQFVLMLFMP 134
+ ++ +L+LF+
Sbjct: 161 ILGLLLALLLLFLL 174
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|129965 TIGR00887, 2A0109, phosphate:H+ symporter | Back alignment and domain information |
|---|
Score = 72.1 bits (177), Expect = 1e-13
Identities = 103/448 (22%), Positives = 174/448 (38%), Gaps = 66/448 (14%)
Query: 2 ALVGAIVGAASGGWINDAYGRKKA---TLLADVVFTAGAIIMAAAPDPYV---LILGRLL 55
A +G + G GW+ D GRK+ L+ ++ T + + + V L R
Sbjct: 65 ASIGTLAGQLFFGWLADKLGRKRVYGMELIIMIIATVASGLSPGSSPKSVMATLCFWRFW 124
Query: 56 VGLGVGIASVTAPVYIAEASPSEVRGGLVSTNVLMITSGQFLSYLVNLAFT-------EV 108
+G+G+G + + +E + + RG +++ M G +V L E
Sbjct: 125 LGVGIGGDYPLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGAIVALIVLAGFKHSLEA 184
Query: 109 PGT---------------WRWMLGVSAVPAIIQFVLMLFMPESPRWLFMKSDKEKAILVL 153
WR ++G AVPA++ L +PE+PR+ + +
Sbjct: 185 AADEASCTGSCVPAVDYMWRILIGFGAVPALLALYFRLTIPETPRYTADVAKDVEQAASD 244
Query: 154 SKIYDIARLEDEIDHLSAAAEEELRKKKTVRYLDVFKSKEIRLAFLAGAGLQAFQ---QF 210
++E E D + A+ K + K L G F F
Sbjct: 245 MSAVLQVKIEAEPDEVEKASTAVEVPKASWSDFFTHFFKWRHGKHLLGTAGSWFLLDIAF 304
Query: 211 TGIN-------TVMYYSPTIVQMAGFQS---NQLALLLSLAVAGTNAVGTIVGIYLIDHF 260
G+N + + YSP ++ + L+ +A+AGT G V ++L+D
Sbjct: 305 YGVNLNQKVILSAIGYSPPAATNNAYEELYKTAVGNLI-IALAGT-VPGYWVTVFLVDII 362
Query: 261 GRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLALYIAFFAPGMGP--V 318
GRK + L G I VL F+ G + + +G++A+ LA + A F P V
Sbjct: 363 GRKPI---QLMGFFILTVLF---FVLGFAYNHLSTHGFLAIYVLAQFFANFGPNATTFIV 416
Query: 319 PWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAE----------LVGTGATFL 368
P EV+P +YR G+SA +I FL +A+ + G
Sbjct: 417 P----GEVFPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIWMGHVLE 472
Query: 369 ILAGIAVLAVVFVILFVPETQGLTFLEV 396
I A L ++F +L +PET+G + E+
Sbjct: 473 IFALFMFLGILFTLL-IPETKGKSLEEL 499
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083) [Transport and binding proteins, Anions]. Length = 502 |
| >gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily | Back alignment and domain information |
|---|
Score = 69.8 bits (171), Expect = 4e-13
Identities = 67/347 (19%), Positives = 127/347 (36%), Gaps = 44/347 (12%)
Query: 3 LVGAIVGAASGGWINDAYGRKKATLLADVVFTAGAIIMAAAPDPYVLILGRLLVGLGVGI 62
+G + G ++D +GR++ L+ ++F G +++ A ++L++ R+L GLG G
Sbjct: 42 SLGYALAQPLAGRLSDRFGRRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGGGA 101
Query: 63 ASVTAPVYIAEASPSEVRGGLVSTNVLMITSGQFLSYLVNLAFTEVPGTWRWMLGVSAVP 122
A IA+ P E RG + G L L+ + G WR + A+
Sbjct: 102 LFPAAAALIADWFPPEERGRALGLLSAGFGLGAALGPLLGGLLASLFG-WRAAFLILAIL 160
Query: 123 AIIQFVLMLFMPESPRWLFMKSDKEKAILVLSKIYDIARLEDEIDHLSAAAEEELRKKKT 182
A++ VL + EE
Sbjct: 161 ALLAAVLAAL---------------------------LLPRPPPESKRPKPAEEAPAPLV 193
Query: 183 VRYLDVFKSKEIRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQMAGFQSNQLALLLSLAV 242
+ + + + L ++ Y P ++ G + LLL LA
Sbjct: 194 PAWKLLLRDPVLWLLLA------LLLFGFAFFALLTYLPLYQEVLGLSALLAGLLLGLA- 246
Query: 243 AGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVI 302
A+G ++ L D GR++ L +L +I++ + L+ ++ SS ++
Sbjct: 247 GLLGAIGRLLLGRLSDRLGRRRRLLLALLLLILAALGLALLSLTESSL---------WLL 297
Query: 303 GLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLI 349
L + F A + P L S++ P++ RG G+ T + +
Sbjct: 298 VALLLLGFGAGLVFPALNALVSDLAPKEERGTASGLYNTAGSLGGAL 344
|
Length = 346 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 67.3 bits (165), Expect = 3e-12
Identities = 47/188 (25%), Positives = 73/188 (38%), Gaps = 13/188 (6%)
Query: 199 LAGAGLQAFQQFTGINTVMYYSPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLID 258
L L F G ++ Y P +Q S A LL +G ++G L D
Sbjct: 177 LLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSD 236
Query: 259 HFGRKK-LALSSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLALYIAFFAPGMGP 317
GR++ L L L + L+LL+ A ++ L + F P
Sbjct: 237 RLGRRRLLLLIGLLLAALGLLLLALAP------------SLALLLVALLLLGFGLGFAFP 284
Query: 318 VPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELVGTGATFLILAGIAVLA 377
TL SE+ P + RG G+ T + + + + G G FLILA +A+LA
Sbjct: 285 ALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALLA 344
Query: 378 VVFVILFV 385
+ ++L
Sbjct: 345 ALLLLLLP 352
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|233168 TIGR00883, 2A0106, metabolite-proton symporter | Back alignment and domain information |
|---|
Score = 62.3 bits (152), Expect = 1e-10
Identities = 79/354 (22%), Positives = 121/354 (34%), Gaps = 64/354 (18%)
Query: 7 IVGAASGGWINDAYGRKKA-----------TLLADVVFTAGAIIMAAAPDPYVLILGRLL 55
+GA G D GRKK TLL ++ + I + A P +L+L RL+
Sbjct: 49 PLGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLIGLLPSYATIGIWA---PILLLLARLI 105
Query: 56 VGLGVGIASVTAPVYIAEASPSEVRGGLVSTNVLMITSGQFLSYLVNLAFTEVPGT---- 111
G +G A +Y+AE +P RG S + G L+ L L + + G
Sbjct: 106 QGFSLGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDDALL 165
Query: 112 ---WRWMLGVSAVPAIIQFVLMLFMPESPRWLFMKSDKEKAILVLSKIYDIARLEDEIDH 168
WR VSAV +I L + E+P + + +K
Sbjct: 166 EWGWRIPFLVSAVLVLIGLYLRRNLEETPVFEKAQEKHKKK------------------- 206
Query: 169 LSAAAEEELRKKKTVRYLDVFKSKEIRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQMAG 228
E L K R FL G GL T + Y PT +
Sbjct: 207 -RGPIAETLTKH--------------RKPFLLGLGL-VIATTTTFYLITTYLPTYLTQTL 250
Query: 229 FQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGS 288
S ALL+ + + + L D GR+ L + LL+ +
Sbjct: 251 GLSANSALLVLMLSLILFFITIPLSGALSDRIGRRP----VLIIFTVLAALLAVPLLMAL 306
Query: 289 SASSSGVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATV 342
S S + V+G+AL + MG E++P + R ++ +
Sbjct: 307 LDSGSFTLFFFLVLGMALIGGMYTGPMGS----FLPELFPTEVRYTGASLAYNL 356
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc [Transport and binding proteins, Unknown substrate]. Length = 394 |
| >gnl|CDD|130366 TIGR01299, synapt_SV2, synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Score = 56.5 bits (136), Expect = 2e-08
Identities = 46/169 (27%), Positives = 69/169 (40%), Gaps = 16/169 (9%)
Query: 4 VGAIVGAASGGWINDAYGRKKATLLADVVFTAGAIIMAAAPDPYVLILGRLLVGLGVGIA 63
+G +VGA G + D GRK+ L+ V A + + RLL G G+G A
Sbjct: 213 LGMMVGAFFWGGLADKLGRKQCLLICLSVNGFFAFFSSFVQGYGFFLFCRLLSGFGIGGA 272
Query: 64 SVTAPVYIAEASPSEVRGGLVSTNVLMITSGQFLSYLVNLAFTEVPG------------- 110
Y AE E RG +S + G Y +A+ +P
Sbjct: 273 IPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGI--YAAAMAWAIIPHYGWSFQMGSAYQF 330
Query: 111 -TWRWMLGVSAVPAIIQFVLMLFMPESPRWLFMKSDKEKAILVLSKIYD 158
+WR + V A P + + FMPESPR+ ++A ++L I+D
Sbjct: 331 HSWRVFVIVCAFPCVFAIGALTFMPESPRFFLENGKHDEAWMILKLIHD 379
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by PFAM model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. Length = 742 |
| >gnl|CDD|233166 TIGR00880, 2_A_01_02, Multidrug resistance protein | Back alignment and domain information |
|---|
Score = 51.5 bits (124), Expect = 5e-08
Identities = 37/134 (27%), Positives = 59/134 (44%), Gaps = 2/134 (1%)
Query: 4 VGAIVGAASGGWINDAYGRKKATLLADVVFTAGAIIMAAAPDPYVLILGRLLVGLGVGIA 63
+G ++ + G + D +GRK L+ +F + A + + VLI+ R L G G A
Sbjct: 9 LGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFA 68
Query: 64 SVTAPVYIAEASPSEVRGGLVSTNVLMITSGQFLSYLVNLAFTEVPGTWRWMLGVSAVPA 123
V IA+ P E RG + I G L + + G WR A+ A
Sbjct: 69 LVAGAALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFLG-WRAPFLFLAILA 127
Query: 124 IIQFVLMLF-MPES 136
+ F+L+ F +PE+
Sbjct: 128 LAAFILLAFLLPET 141
|
Length = 141 |
| >gnl|CDD|236927 PRK11551, PRK11551, putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Score = 54.2 bits (131), Expect = 5e-08
Identities = 83/386 (21%), Positives = 151/386 (39%), Gaps = 66/386 (17%)
Query: 2 ALVGAIVGAASGGWINDAYGRKKATLLADVVFTAGAIIMAAAPDPYVLILGRLLVGLGVG 61
++G + GA GG + D GRK+ +++ +F ++ A A D L++ RLL G+G+G
Sbjct: 59 GILGLLPGALLGGRLADRIGRKRILIVSVALFGLFSLATAQAWDFPSLLVARLLTGVGLG 118
Query: 62 IASVTAPVYIAEASPSEVRGGLVSTNVLMITSGQFLSYLVNLAFTEVPGTWRWMLGV-SA 120
A +EA +RG VS + G L+ ++ + WR + V
Sbjct: 119 GALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGV-LAAGDAAWRHIFYVGGV 177
Query: 121 VPAIIQFVLMLFMPESPRWLFMKSDKEKAILVLSKIYDIARLEDEIDHLSAAAEEELRKK 180
P ++ +LM ++PES + ++ VL ++ R
Sbjct: 178 GPLLLVPLLMRWLPESRAFAQAAGAGKQRAPVLRALFGEGR------------------- 218
Query: 181 KTVRYLDVFKSKEIRLAFLAGAGLQAFQQFTGINTVMY----YSPTIVQMAGFQSNQLAL 236
A A L + + V+Y + P+++ G +Q L
Sbjct: 219 -------------------ATATLLLWISYFFTLIVLYFLLNWLPSLLVGQGLSRSQAGL 259
Query: 237 L-LSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGV 295
+ ++ + G A+G+++ L+D +++ L AG++ SL L A++
Sbjct: 260 VQIAFNIGG--ALGSLLIGALMDRLRPRRVVLLIYAGILASLAAL---------AAAPSF 308
Query: 296 YGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLI---VAQ 352
+ + G A F G V + L YP Q RG G + V + ++ +A
Sbjct: 309 -AGMLLAGFAA--GLFVVGGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAG 365
Query: 353 TFLTVAELVGTGATFLILAGIAVLAV 378
L +G +I A I V+ V
Sbjct: 366 QLLA----LGRSTVGVIGASIPVILV 387
|
Length = 406 |
| >gnl|CDD|223809 COG0738, FucP, Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 53.5 bits (129), Expect = 1e-07
Identities = 80/392 (20%), Positives = 137/392 (34%), Gaps = 49/392 (12%)
Query: 8 VGAASGGWINDAYGRKKATLLADVVFTAGAIIMAAAPD--PYVLILGRLLV-GLGVGIAS 64
+ + G + G K +L +++ GA + A Y L L + G+G+
Sbjct: 63 IMSLPAGLLIKKLGYKAGIVLGLLLYAVGAALFWPAASSKSYGFFLVALFILASGIGLLE 122
Query: 65 VTAPVYIAEASPSEV---RGGLVST-NVLMITSG-QFLSYLVNLAFTEVPGTWRWMLGVS 119
A Y+ E R L N L G S L+ L +S
Sbjct: 123 TAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLI---------LSGVALTMS 173
Query: 120 AVPAIIQFVLMLFMPESPRWLFMKSDKEKAILVLSKIYDIARLEDEIDHLSAAAEEELRK 179
A + S ++ ++ + L + + L ++ L AA
Sbjct: 174 AA---QILAIKGADASSVQFPYL------ILAGLLVLLAVLILLSKLPDLQVAAPSLGAS 224
Query: 180 KKTVRYLDVFKSKEIRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQMAGFQSNQLALLLS 239
+F++K +RL LA + G V Y + ++ G Q A LS
Sbjct: 225 GSAG-LSSLFQNKHLRLGVLAIFLYVGAEVAIGSFLVSY----LEELLGLNEQQAAYYLS 279
Query: 240 LAVAGTNAVGTIVGIYLIDHF-GRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGW 298
G VG +G L+ K LA +L +++ L + A I G
Sbjct: 280 FFWVGF-MVGRFIGSALMSRIKPEKYLAFYALIAILLLLAV---ALIG----------GV 325
Query: 299 IAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVA 358
+A+ L L I F M P ++L + E G + + + I+ +A
Sbjct: 326 VALYALFL-IGLFNSIMFPTIFSLALKNLGEHTSVGSGLLVMAI--VGGAIIPPLQGVIA 382
Query: 359 ELVGTGATFLILAGIAVLAVVFVILFVPETQG 390
++ G TFLI+ + L V+F L +++G
Sbjct: 383 DMFGIQLTFLIVPLLCYLYVLFFALIGKKSKG 414
|
Length = 422 |
| >gnl|CDD|179668 PRK03893, PRK03893, putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Score = 53.5 bits (129), Expect = 1e-07
Identities = 85/400 (21%), Positives = 151/400 (37%), Gaps = 52/400 (13%)
Query: 14 GWINDAYGRKKATLLADVVFTAGAIIMAAAPDPYVLILGRLLVGLGVGIASVTAPVYIAE 73
G + D YGR+ A +++ V+F+ G + AP + L + RL++G+G+ ++ Y+ E
Sbjct: 76 GAMGDRYGRRLAMVISIVLFSVGTLACGFAPGYWTLFIARLVIGMGMAGEYGSSATYVIE 135
Query: 74 ASPSEVR----GGLVST-NVLMITSGQFLSYLVNLAFTEVPGTWRWMLGVSAVPAIIQFV 128
+ P +R G L+S ++ + + Q S +V WR + + +P I
Sbjct: 136 SWPKHLRNKASGFLISGFSIGAVVAAQVYSLVVP------VWGWRALFFIGILPIIFALW 189
Query: 129 LMLFMPESPRWLFMKSDKEKAILVLSKIYDIARLEDEI--DHLSAAAEEELRKKKTVRYL 186
L +PE+ W + K ++ +Y I +AAA
Sbjct: 190 LRKNLPEAEDWKEKHAGKAPVRTMVDILYRGEHRIINILLTLAAAAALWFCFAGNLQNAA 249
Query: 187 DVFKSKEIRLAFLAGAGLQAFQ-QFTGINTVM------------YYS-------PTIVQM 226
V L L A +F Q +G YS PT ++
Sbjct: 250 IV-----AVLGLLCAAIFISFMVQSSGKRWPTGVMLMVVVLFAFLYSWPIQALLPTYLKT 304
Query: 227 -AGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFI 285
G+ + +A +L + G AVG VG +L D G +K + SL +IS +L+ F
Sbjct: 305 DLGYDPHTVANVLFFSGFG-AAVGCCVGGFLGDWLGTRKAYVCSL---LISQLLIIPVFA 360
Query: 286 SGSSASSSGVYGWIAVIGLALYI-AFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNW 344
G + V+GL L+ G+ + L + + R G + V
Sbjct: 361 IGG--------ANVWVLGLLLFFQQMLGQGISGLLPKLIGGYFDTEQRAAGLGFTYNVGA 412
Query: 345 ISNLIVAQTFLTVAELVGTGATFLILAGIAVLAVVFVILF 384
+ + +A+ + G L+ V+ +I
Sbjct: 413 LGGALAPILGALIAQRLDLGTALASLSFSLTFVVILLIGL 452
|
Length = 496 |
| >gnl|CDD|233172 TIGR00891, 2A0112, putative sialic acid transporter | Back alignment and domain information |
|---|
Score = 53.0 bits (127), Expect = 1e-07
Identities = 35/133 (26%), Positives = 60/133 (45%), Gaps = 1/133 (0%)
Query: 8 VGAASGGWINDAYGRKKATLLADVVFTAGAIIMAAAPDPYVLILGRLLVGLGVGIASVTA 67
GA G D YGR+ + + V+F+AG + AP + + RL++G+G+G ++
Sbjct: 62 FGALMFGLWGDRYGRRLPMVTSIVLFSAGTLACGFAPGYITMFIARLVIGIGMGGEYGSS 121
Query: 68 PVYIAEASPSEVRGGLVSTNVLMITSGQFLSYLVNLAFTEVPG-TWRWMLGVSAVPAIIQ 126
Y+ E+ P +R + G ++ V V G WR + +S +P I
Sbjct: 122 AAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVPVWGDGWRALFFISILPIIFA 181
Query: 127 FVLMLFMPESPRW 139
L +PE+ W
Sbjct: 182 LWLRKNIPEAEDW 194
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 405 |
| >gnl|CDD|225371 COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 52.6 bits (127), Expect = 2e-07
Identities = 80/391 (20%), Positives = 130/391 (33%), Gaps = 73/391 (18%)
Query: 2 ALVGAIVGAASGGWINDAYGRKKATLLADVVFTAGAIIMAAAPDPYVLILGRLLVGLGVG 61
AL A+ R++ L +F ++ A AP VL+L R L GL G
Sbjct: 58 ALGVALGAPLLALLT-GRLERRRLLLGLLALFIVSNLLSALAPSFAVLLLARALAGLAHG 116
Query: 62 IASVTAPVYIAEASPSEVRG--------GLVSTNVLMITSGQFLSYLVNLAFTEVPGTWR 113
+ A A P RG GL VL + G FL L WR
Sbjct: 117 VFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQLFG---------WR 167
Query: 114 W-MLGVSAVPAIIQFVLMLFMPESPRWLFMKSDKEKAILVLSKIYDIARLEDEIDHLSAA 172
L ++ + + +L +P S +S +
Sbjct: 168 ATFLAIAVLALLALLLLWKLLPPS-------------------------------EISGS 196
Query: 173 AEEELRKKKTVRYLDVFKSKEIRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQMAGFQSN 232
LR L + + + L LA L F Y P + +AGF +
Sbjct: 197 LPGPLR-----TLLRLLRRPGVLLGLLATF-LFMTGHFALYT---YIRPFLESVAGFSVS 247
Query: 233 QLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASS 292
++L+L LA +G ++G L D R+ L + L + L L
Sbjct: 248 AVSLVL-LAFGIAGFIGNLLGGRLADRGPRRALIAALLLLALALLALTFT---------- 296
Query: 293 SGVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQ 352
G +A+ L L F T + + P+ + G ++ + + A
Sbjct: 297 -GASPALALALLFL-WGFAFSPALQGLQTRLARLAPDA-ADLAGSLNVAAFNLGIALGAA 353
Query: 353 TFLTVAELVGTGATFLILAGIAVLAVVFVIL 383
V + +G AT + A + +LA++ +L
Sbjct: 354 LGGLVLDALGYAATGWVGAALLLLALLLALL 384
|
Length = 394 |
| >gnl|CDD|237051 PRK12307, PRK12307, putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Score = 49.2 bits (117), Expect = 2e-06
Identities = 74/381 (19%), Positives = 141/381 (37%), Gaps = 41/381 (10%)
Query: 2 ALVGAIVGAASGGWINDAYGRKKATLLADVVFTAGAIIMAAAPDPYVLILGRLLVGLGVG 61
A +G G A G + D +GRK + + V ++ G + A +L L R +VG+G+
Sbjct: 62 AFIGRPFGGALFGLLADKFGRKPLMMWSIVAYSVGTGLSGLASGVIMLTLSRFIVGMGMA 121
Query: 62 IASVTAPVYIAEASPSEVRGGLVSTNVLMITSGQFLSYLVNLAFTEVPGTWRWMLGVSAV 121
A Y E+ P ++ + V G ++ +F E G WR V +
Sbjct: 122 GEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFAEAYG-WRAAFFVGLL 180
Query: 122 PAIIQFVLMLFMPESPRWLFMKSDKEKAILVLSKIYDIARLEDEIDHLSAAAEEELRKKK 181
P ++ + PES W E ++ ++
Sbjct: 181 PVLLVIYIRARAPESKEW----------------------EEAKLSGKGKHSQSAW-SVF 217
Query: 182 TVRYLDVFKSKEIRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQMAGFQSNQLALLLSLA 241
++ +F + L + F F + PT + GF + ++ L++ A
Sbjct: 218 SLSMKGLFNRAQFPLTLC--VFIVLFSIFGANWPIFGLLPTYLAGEGFDTGVVSNLMTAA 275
Query: 242 VAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGWIAV 301
GT +G IV D G KK + G+++S + + F +
Sbjct: 276 AFGT-VLGNIVWGLCADRIGLKK---TFSIGLLMSFLFIFPLFRIPQDNYL--------L 323
Query: 302 IGLALY-IAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLI--VAQTFLTVA 358
+G L+ + G+G + + +P + RG+ G+ + S +A T+L +
Sbjct: 324 LGACLFGLMATNVGVGGLVPKFLYDYFPLEVRGLGTGLIYNLAATSGTFNSMAATWLGIT 383
Query: 359 ELVGTGATFLILAGIAVLAVV 379
+G TF++ A + ++
Sbjct: 384 MGLGAALTFIVAFWTATILLI 404
|
Length = 426 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 47.7 bits (114), Expect = 5e-06
Identities = 40/196 (20%), Positives = 77/196 (39%), Gaps = 13/196 (6%)
Query: 199 LAGAGLQAFQQFTGINTVMYYSPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLID 258
L L F + P + + G ++Q L++S G A+G+++ YL D
Sbjct: 1 LLLLFLGFFLSGLDRGLLSPALPLLAEDLGLSASQAGLIVSAFSLGY-ALGSLLAGYLSD 59
Query: 259 HFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLALYIAFFAPGMGPV 318
FGR+++ L L + +LL++A ++ + + P
Sbjct: 60 RFGRRRVLLLGLLLFALGSLLLAFA------------SSLWLLLVGRFLLGLGGGALYPA 107
Query: 319 PWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELVGTGATFLILAGIAVLAV 378
L +E +P + RG G+ + + L+ +AE +G FLILA + +L
Sbjct: 108 AAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAILGLLLA 167
Query: 379 VFVILFVPETQGLTFL 394
+ ++ + L
Sbjct: 168 LLLLFLLRLLLLLALA 183
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|182433 PRK10406, PRK10406, alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Score = 46.0 bits (109), Expect = 2e-05
Identities = 81/351 (23%), Positives = 137/351 (39%), Gaps = 70/351 (19%)
Query: 13 GGW----INDAYGRKKATLLADVVFTAGAIIMAAAPD--------PYVLILGRLLVGLGV 60
GGW I D +GRKK+ L++ + G++++A P P +L+L RL GL V
Sbjct: 79 GGWLFGRIADKHGRKKSMLISVCMMCFGSLVIACLPGYETIGTWAPALLLLARLFQGLSV 138
Query: 61 GIASVTAPVYIAEASPSEVRGGLVSTNVLMITSGQFLSYLVNLAFTEVPGT-------WR 113
G T+ Y++E + +G S + + GQ L+ LV + + WR
Sbjct: 139 GGEYGTSATYMSEVAVEGRKGFYASFQYVTLIGGQLLALLVVVVLQQTLEDAELREWGWR 198
Query: 114 WMLGVSAVPAIIQFVLMLFMPESPRWLFMKSDKEKAILVLSKIYDIARLEDEIDHLSAAA 173
+ AV A++ L R L S +E A +
Sbjct: 199 IPFALGAVLAVVALWLR-------RQLDETSQQETR-----------------ALKEAGS 234
Query: 174 EEELRKKKTVRYLDVFKSKEIRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQMAGFQSNQ 233
+ L + + ++ + L F A L F FT Y +V AG +N
Sbjct: 235 LKGLWRNR--------RAFIMVLGFTAAGSL-CFYTFT-----TYMQKYLVNTAGMHANV 280
Query: 234 LALLLSLAVAGTNAVGTIVGIYLIDHFGRKK--LALSSLAGVIISLVLLSWAFISGSSAS 291
+ +++ A+ + ++G L D GR+ L SLA + +L + +S
Sbjct: 281 ASGIMTAALFVFMLIQPLIGA-LSDKIGRRTSMLCFGSLAALFTVPILSALQNVSSP--- 336
Query: 292 SSGVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATV 342
Y ++ AL I F + + L +E++P Q R + G+S V
Sbjct: 337 ----YAAFGLVMCALLIVSFYTSISGI---LKAEMFPAQVRALGVGLSYAV 380
|
Length = 432 |
| >gnl|CDD|225365 COG2807, CynX, Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 7e-05
Identities = 57/288 (19%), Positives = 101/288 (35%), Gaps = 55/288 (19%)
Query: 26 TLLADVVFTAGAIIMAAAPDPYVLILGRLLVGLGVGIASVTAPVYIAEASPSEVRGGLVS 85
+L ++ A I++ + +L LG LL G G+ + +V P I P V G +
Sbjct: 79 SLFLALLLIAAGILIRSLGGLPLLFLGTLLAGAGIAVINVLLPSLIKRDFPKRV-GLMTG 137
Query: 86 TNVLMITSGQFLSYLVNLAFTEVPGTWRWMLGVSAVPAIIQFVLMLFMPESPRWLFMKSD 145
+ +G L+ + + + G WR LG A+ A++ ++ L +
Sbjct: 138 LYSTSLGAGAALAAALAVPLAQHSGGWRGALGFWALLALLALLIWLPQALREQ------- 190
Query: 146 KEKAILVLSKIYDIARLEDEIDHLSAAAEEELRKKKTVRYLDVFKSKEIRLAFLAG--AG 203
S A K V V++S LA+ G
Sbjct: 191 ----------------------AASIAT-------KLVSVRKVWRS---PLAWQVTLFMG 218
Query: 204 LQAFQQFTGINTVMYYSPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFG-R 262
LQ+ + V+ + P I+ G + + LLSL ++ L +
Sbjct: 219 LQSLLYY----IVIGWLPAILIDRGLSAAEAGSLLSLMQLAQ-LPTALLIPLLARRSKNQ 273
Query: 263 KKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLALYIAF 310
+ L + +L +++ LV L A W ++GL AF
Sbjct: 274 RPLVVLALLLMLVGLVGLLL-------APGQLPILWALLLGLGQGGAF 314
|
Length = 395 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 2e-04
Identities = 37/132 (28%), Positives = 66/132 (50%), Gaps = 2/132 (1%)
Query: 4 VGAIVGAASGGWINDAYGRKKATLLADVVFTA-GAIIMAAAPDPYVLILGRLLVGLGVGI 62
+G I+GA GG ++D GR++ LL ++ A G +++A AP +L++ LL+G G+G
Sbjct: 222 LGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPSLALLLVALLLLGFGLGF 281
Query: 63 ASVTAPVYIAEASPSEVRGGLVSTNVLMITSGQFLSYLVNLAFTEVPGTWRWMLGVSAVP 122
A +E +P E RG + G L L+ + G + + + A
Sbjct: 282 AFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGG-YGGVFLILAAL 340
Query: 123 AIIQFVLMLFMP 134
A++ +L+L +P
Sbjct: 341 ALLAALLLLLLP 352
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|233167 TIGR00881, 2A0104, phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 6e-04
Identities = 66/345 (19%), Positives = 124/345 (35%), Gaps = 44/345 (12%)
Query: 13 GGWINDAYGRKKATLLADVVFTAGA-IIMAAAPDPYVLILGRLLVGLGVGIASVTAPVYI 71
G ++D + L ++ A + + +V+ L G+ G+ +
Sbjct: 50 MGSVSDRSN-PRVFLPIGLILCAIVNLFFGFSTSLWVMAALWALNGIFQGMGWPPCGRTV 108
Query: 72 AEASPSEVRGGLVST-NVLMITSGQFLSYLVNLAFTEVPGTWRWMLGVSAVPAII-QFVL 129
+ RG VS N G L LV E+ +W W+ V + AII +
Sbjct: 109 TKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAEL-YSWHWVFIVPGIIAIIVSLIC 167
Query: 130 MLFMPESPRWLFMKSDKEKAILVLSKIYDIARLEDEIDHLSAAAEEELRKKK-TVRYLDV 188
L + +SP+ + +E +E D + EEEL KK+ ++Y+ +
Sbjct: 168 FLLLRDSPQSCGLPPAEEMPN-------------EEPDGDAEKKEEELTKKQIFLQYV-L 213
Query: 189 FKSKEIRLAFLAGAGLQAFQQFTGINT-VMYYSPTIVQMAGFQSNQLALLLSLAVAGTNA 247
++ + + TGI Y + +++ L L
Sbjct: 214 LNKVLWYISL---GYVFVYVVRTGILDWSPLYLTQEKGFSKEKASWAFTLYELG----GL 266
Query: 248 VGTIVGIYLIDHF---GRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGL 304
VGT++ +L D R LA+ +A +I+SL L+ W + + +
Sbjct: 267 VGTLLAGWLSDKLFNGRRGPLAVFFMALIIVSL-LVYWLNPAAN-------PLMDLICLF 318
Query: 305 ALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLI 349
A + F G + + SE+ P++ G + V + + L
Sbjct: 319 A--LGFLVYGPQMLIGVIASELAPKK---AAGTAAGFVGFFAYLG 358
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 379 |
| >gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily | Back alignment and domain information |
|---|
Score = 39.7 bits (93), Expect = 0.002
Identities = 39/185 (21%), Positives = 68/185 (36%), Gaps = 13/185 (7%)
Query: 204 LQAFQQFTGINTVMYYSPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRK 263
+ + G ++ LLL+ G A+ + L D FGR+
Sbjct: 4 AAFLAGLGRSLLGPALPLYLAEDLGISPTEIGLLLTAFSLGY-ALAQPLAGRLSDRFGRR 62
Query: 264 KLALSSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLALYIAFFAPGMGPVPWTLN 323
++ L L + L+LL +A ++ L + + P L
Sbjct: 63 RVLLIGLLLFALGLLLLLFA------------SSLWLLLVLRVLQGLGGGALFPAAAALI 110
Query: 324 SEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELVGTGATFLILAGIAVLAVVFVIL 383
++ +P + RG G+ + + + +A L G A FLILA +A+LA V L
Sbjct: 111 ADWFPPEERGRALGLLSAGFGLGAALGPLLGGLLASLFGWRAAFLILAILALLAAVLAAL 170
Query: 384 FVPET 388
+P
Sbjct: 171 LLPRP 175
|
Length = 346 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 421 | |||
| KOG0569 | 485 | consensus Permease of the major facilitator superf | 100.0 | |
| KOG0254 | 513 | consensus Predicted transporter (major facilitator | 100.0 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 100.0 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 100.0 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 100.0 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 100.0 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 100.0 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 100.0 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 100.0 | |
| KOG0252 | 538 | consensus Inorganic phosphate transporter [Inorgan | 100.0 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 100.0 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 100.0 | |
| KOG0255 | 521 | consensus Synaptic vesicle transporter SVOP and re | 100.0 | |
| KOG0253 | 528 | consensus Synaptic vesicle transporter SV2 (major | 100.0 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 99.97 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 99.97 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 99.97 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 99.97 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 99.97 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 99.97 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 99.97 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 99.97 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 99.97 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 99.97 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 99.97 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 99.96 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 99.96 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 99.96 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 99.96 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 99.96 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 99.96 | |
| KOG2532 | 466 | consensus Permease of the major facilitator superf | 99.96 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 99.96 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 99.96 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 99.96 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 99.95 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 99.95 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 99.95 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 99.95 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 99.95 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 99.95 | |
| PRK10504 | 471 | putative transporter; Provisional | 99.95 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 99.95 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 99.95 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 99.94 | |
| PRK03699 | 394 | putative transporter; Provisional | 99.94 | |
| PRK12382 | 392 | putative transporter; Provisional | 99.94 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 99.94 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 99.94 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 99.94 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 99.94 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 99.94 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 99.94 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 99.94 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 99.94 | |
| PRK11043 | 401 | putative transporter; Provisional | 99.94 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 99.93 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 99.93 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 99.93 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 99.93 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 99.93 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 99.93 | |
| KOG2533 | 495 | consensus Permease of the major facilitator superf | 99.93 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 99.93 | |
| KOG1330 | 493 | consensus Sugar transporter/spinster transmembrane | 99.92 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 99.92 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 99.92 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 99.91 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.91 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 99.91 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 99.91 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 99.91 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 99.9 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 99.9 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.9 | |
| PRK10054 | 395 | putative transporter; Provisional | 99.9 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 99.89 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 99.89 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.89 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 99.88 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 99.88 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 99.87 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 99.86 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 99.86 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 99.86 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 99.86 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 99.84 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 99.83 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 99.81 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 99.81 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 99.81 | |
| KOG2615 | 451 | consensus Permease of the major facilitator superf | 99.81 | |
| KOG2504 | 509 | consensus Monocarboxylate transporter [Carbohydrat | 99.8 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 99.77 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 99.77 | |
| KOG3764 | 464 | consensus Vesicular amine transporter [Intracellul | 99.77 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 99.76 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 99.75 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 99.73 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 99.73 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 99.7 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 99.69 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 99.69 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 99.67 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 99.66 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 99.66 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 99.65 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 99.64 | |
| PRK11462 | 460 | putative transporter; Provisional | 99.58 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 99.54 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 99.52 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 99.51 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 99.49 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 99.47 | |
| KOG4686 | 459 | consensus Predicted sugar transporter [Carbohydrat | 99.45 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 99.42 | |
| KOG2563 | 480 | consensus Permease of the major facilitator superf | 99.4 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 99.36 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 99.36 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 99.34 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 99.34 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 99.27 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 99.22 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 99.22 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 99.22 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 99.21 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 99.21 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 99.2 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 99.18 | |
| PRK10054 | 395 | putative transporter; Provisional | 99.17 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 99.17 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 99.16 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 99.16 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 99.16 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 99.15 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.15 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 99.15 | |
| KOG2325 | 488 | consensus Predicted transporter/transmembrane prot | 99.15 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 99.14 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.13 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 99.13 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 99.13 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 99.12 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 99.12 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.11 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 99.11 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 99.09 | |
| KOG2816 | 463 | consensus Predicted transporter ADD1 (major facili | 99.09 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 99.08 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 99.08 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 99.08 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 99.07 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 99.07 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 99.06 | |
| KOG3626 | 735 | consensus Organic anion transporter [Secondary met | 99.06 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 99.06 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 99.06 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 99.06 | |
| PRK12382 | 392 | putative transporter; Provisional | 99.05 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 99.05 | |
| PRK10504 | 471 | putative transporter; Provisional | 99.04 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 99.04 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 99.03 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 99.01 | |
| PRK03699 | 394 | putative transporter; Provisional | 99.01 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 99.01 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 99.0 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 99.0 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 98.99 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 98.98 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 98.98 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 98.98 | |
| PRK11043 | 401 | putative transporter; Provisional | 98.98 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 98.97 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 98.97 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 98.96 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 98.95 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 98.94 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 98.89 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 98.89 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 98.88 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 98.87 | |
| KOG3098 | 461 | consensus Uncharacterized conserved protein [Funct | 98.85 | |
| KOG1330 | 493 | consensus Sugar transporter/spinster transmembrane | 98.85 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 98.84 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 98.84 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 98.84 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 98.82 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 98.82 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 98.82 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 98.81 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 98.81 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 98.8 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 98.8 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 98.78 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 98.78 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 98.76 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 98.74 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 98.74 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 98.73 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 98.69 | |
| KOG0255 | 521 | consensus Synaptic vesicle transporter SVOP and re | 98.68 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 98.67 | |
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 98.66 | |
| KOG0569 | 485 | consensus Permease of the major facilitator superf | 98.64 | |
| KOG2615 | 451 | consensus Permease of the major facilitator superf | 98.64 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 98.63 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 98.63 | |
| KOG2532 | 466 | consensus Permease of the major facilitator superf | 98.63 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 98.62 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 98.6 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 98.59 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 98.57 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 98.54 | |
| COG0477 | 338 | ProP Permeases of the major facilitator superfamil | 98.53 | |
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 98.53 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 98.52 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 98.51 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 98.5 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 98.47 | |
| KOG0254 | 513 | consensus Predicted transporter (major facilitator | 98.43 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 98.42 | |
| KOG0253 | 528 | consensus Synaptic vesicle transporter SV2 (major | 98.41 | |
| KOG3764 | 464 | consensus Vesicular amine transporter [Intracellul | 98.24 | |
| KOG2504 | 509 | consensus Monocarboxylate transporter [Carbohydrat | 98.24 | |
| KOG0252 | 538 | consensus Inorganic phosphate transporter [Inorgan | 98.22 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 98.21 | |
| KOG2533 | 495 | consensus Permease of the major facilitator superf | 98.2 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 98.18 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 98.16 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 98.1 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 98.06 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 98.03 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 98.02 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 98.0 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 97.98 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 97.95 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 97.93 | |
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 97.78 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 97.76 | |
| PRK11462 | 460 | putative transporter; Provisional | 97.76 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 97.75 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 97.74 | |
| KOG2816 | 463 | consensus Predicted transporter ADD1 (major facili | 97.69 | |
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 97.69 | |
| TIGR00769 | 472 | AAA ADP/ATP carrier protein family. These proteins | 97.52 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 97.52 | |
| KOG3762 | 618 | consensus Predicted transporter [General function | 97.5 | |
| KOG3810 | 433 | consensus Micronutrient transporters (folate trans | 97.38 | |
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 97.35 | |
| PF12832 | 77 | MFS_1_like: MFS_1 like family | 97.34 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 97.32 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 97.21 | |
| KOG2563 | 480 | consensus Permease of the major facilitator superf | 97.04 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 96.99 | |
| KOG4686 | 459 | consensus Predicted sugar transporter [Carbohydrat | 96.91 | |
| KOG2325 | 488 | consensus Predicted transporter/transmembrane prot | 96.86 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 96.83 | |
| PF07672 | 267 | MFS_Mycoplasma: Mycoplasma MFS transporter; InterP | 96.82 | |
| KOG3574 | 510 | consensus Acetyl-CoA transporter [Inorganic ion tr | 96.68 | |
| TIGR00939 | 437 | 2a57 Equilibrative Nucleoside Transporter (ENT). | 96.64 | |
| KOG4332 | 454 | consensus Predicted sugar transporter [Carbohydrat | 96.56 | |
| KOG0637 | 498 | consensus Sucrose transporter and related proteins | 96.56 | |
| PF13000 | 544 | Acatn: Acetyl-coenzyme A transporter 1; InterPro: | 96.38 | |
| PF00854 | 372 | PTR2: POT family; InterPro: IPR000109 This entry r | 96.22 | |
| KOG3762 | 618 | consensus Predicted transporter [General function | 96.12 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 95.98 | |
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 95.95 | |
| TIGR00769 | 472 | AAA ADP/ATP carrier protein family. These proteins | 95.6 | |
| KOG1237 | 571 | consensus H+/oligopeptide symporter [Amino acid tr | 95.51 | |
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 95.3 | |
| PF06779 | 85 | DUF1228: Protein of unknown function (DUF1228); In | 94.94 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 94.69 | |
| KOG3626 | 735 | consensus Organic anion transporter [Secondary met | 94.64 | |
| COG0477 | 338 | ProP Permeases of the major facilitator superfamil | 93.86 | |
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 92.75 | |
| KOG1479 | 406 | consensus Nucleoside transporter [Nucleotide trans | 91.65 | |
| COG3202 | 509 | ATP/ADP translocase [Energy production and convers | 91.61 | |
| PF03219 | 491 | TLC: TLC ATP/ADP transporter; InterPro: IPR004667 | 91.6 | |
| PF06779 | 85 | DUF1228: Protein of unknown function (DUF1228); In | 91.46 | |
| KOG1237 | 571 | consensus H+/oligopeptide symporter [Amino acid tr | 91.41 | |
| PF12832 | 77 | MFS_1_like: MFS_1 like family | 90.99 | |
| PF03219 | 491 | TLC: TLC ATP/ADP transporter; InterPro: IPR004667 | 90.97 | |
| PF00854 | 372 | PTR2: POT family; InterPro: IPR000109 This entry r | 90.82 | |
| PF13000 | 544 | Acatn: Acetyl-coenzyme A transporter 1; InterPro: | 89.39 | |
| KOG0637 | 498 | consensus Sucrose transporter and related proteins | 89.05 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 88.83 | |
| KOG3098 | 461 | consensus Uncharacterized conserved protein [Funct | 88.17 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 87.92 | |
| PF01733 | 309 | Nucleoside_tran: Nucleoside transporter; InterPro: | 87.64 | |
| KOG3574 | 510 | consensus Acetyl-CoA transporter [Inorganic ion tr | 87.57 | |
| KOG4332 | 454 | consensus Predicted sugar transporter [Carbohydrat | 87.31 | |
| TIGR00939 | 437 | 2a57 Equilibrative Nucleoside Transporter (ENT). | 86.33 | |
| KOG1479 | 406 | consensus Nucleoside transporter [Nucleotide trans | 82.76 | |
| KOG2601 | 503 | consensus Iron transporter [Inorganic ion transpor | 81.96 | |
| KOG3880 | 409 | consensus Predicted small molecule transporter inv | 80.51 |
| >KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-47 Score=355.97 Aligned_cols=398 Identities=31% Similarity=0.599 Sum_probs=336.7
Q ss_pred chhhhHHHHhhhhhhhcccchhHHHHHHHHHHHHHHHHHH---hcCChhHHHHHHHHHHhhhhhhhhhHHHHHhhcCCCC
Q 014616 2 ALVGAIVGAASGGWINDAYGRKKATLLADVVFTAGAIIMA---AAPDPYVLILGRLLVGLGVGIASVTAPVYIAEASPSE 78 (421)
Q Consensus 2 ~~ig~~~g~~~~g~l~dr~Grr~~~~~~~~l~~i~~~~~~---~~~s~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~ 78 (421)
..+|.++|++..|+++||+|||..+.++.++..++.++.. ..+++++++++|++.|+..|........++.|..|.+
T Consensus 69 f~iG~~~Gs~~~~~la~~~GRK~~l~~~~~l~~~~~~~~~~s~~~~~~e~li~GR~i~Gl~~gl~~~~~pmyl~E~sP~~ 148 (485)
T KOG0569|consen 69 FFIGGMIGSFSSGLLADRFGRKNALLLSNLLAVLAALLMGLSKSAPSFEMLILGRLIVGLACGLSTGLVPMYLTEISPKN 148 (485)
T ss_pred HHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhHHHHHHHHHHHhhcChhh
Confidence 4689999999999999999999999999988888877765 4678999999999999999999999999999999999
Q ss_pred CccchhchHHHHHHHHHHHHHHHhhh-cccCCccchHHHHhhHHHHHHHHHHhhcCCcChHHHHh-cCCHHHHHHHHHHh
Q 014616 79 VRGGLVSTNVLMITSGQFLSYLVNLA-FTEVPGTWRWMLGVSAVPAIIQFVLMLFMPESPRWLFM-KSDKEKAILVLSKI 156 (421)
Q Consensus 79 ~rg~~~~~~~~~~~~g~~l~~~~~~~-~~~~~~~Wr~~f~~~~~~~l~~~~~~~~~~esp~~~~~-~~~~~~~~~~~~~~ 156 (421)
.||........+..+|.+++..++.- +.+....|++.+....+++++.++...++||||+|+.. ++|++++.+.+++.
T Consensus 149 ~RG~~g~~~~~~~~~g~ll~~~~~l~~ilGt~~~W~~l~~~~~i~~~~~l~~l~~~PESPk~Ll~~k~~~~~A~~sl~~y 228 (485)
T KOG0569|consen 149 LRGALGTLLQIGVVIGILLGQVLGLPSLLGTEDLWPYLLAFPLIPALLQLALLPFLPESPKYLLIKKGDEEEARKALKFY 228 (485)
T ss_pred hccHHHHHHHHHHHHHHHHHHHHccHHhcCCCcchHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHcCCHHHHHHHHHHH
Confidence 99999999999999999999776643 34444569999999999999999999999999999998 89999999999999
Q ss_pred cChhhhHHHHHHHHHHHHHHH-hhcccccHHHhhcchhHHHHHHHHHHHHHHHhhcCcceehhchHHHHHHcCCCChHHH
Q 014616 157 YDIARLEDEIDHLSAAAEEEL-RKKKTVRYLDVFKSKEIRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQMAGFQSNQLA 235 (421)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 235 (421)
++.++.+++.++..++.+++. ++++..+.+++++++..+.............++.+.+.+.+|...++++.|++..+..
T Consensus 229 ~G~~~~~~~~e~~~~e~~~~~~~~~~~~sl~~~~~~~~lR~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~aG~~~~~a~ 308 (485)
T KOG0569|consen 229 RGKEDVEAEIEEMLREIEEEELEKKKQISLRQLLKNPTLRRPLLIGIVVSFAQQFSGINAIFFYSTSIFKTAGFTPEEAQ 308 (485)
T ss_pred hCCCcchhHHHHHHHHHHHhccccccCCcHHHHhcCcchhHHHHHHHHHHHHHHhcCcceeHHHHHHHHHHcCCCHHHHH
Confidence 998776665555444333332 2235567899999999998877777788889999999999999999999999876644
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHhhHHHHHHHHHHHHHHhhCCCCCCCcchhHHHHHHHHHHHHHhhccc
Q 014616 236 LLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLALYIAFFAPGM 315 (421)
Q Consensus 236 ~~~~~~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 315 (421)
+........+.+.++++.+++||.|||++++.+..+..++.+.+........... ....+..+.+...+...+..|+
T Consensus 309 -~an~~~g~v~~~~t~~~~~lid~~gRRpLll~~~~~~~~~~~~~~~~~~l~~~~~--~~~~y~~i~~~~~~~~~f~~G~ 385 (485)
T KOG0569|consen 309 -YANLGIGIVNLLSTLVSPFLIDRLGRRPLLLISLSLMAVALLLMSIALFLSNSFG--SWLSYLCIAAIFLFIISFAIGP 385 (485)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hHHHHHHHHHHHHHHHhhhcCC
Confidence 4445555668999999999999999999999888877777777655433221111 2233455667777888999999
Q ss_pred ccccceeccccCccchhhhhhHHHHHHHHHHHHHHHHHhHHHHHHcCcchhhHHHHHHHHHHHHHHHhhccCCCCCCHHH
Q 014616 316 GPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELVGTGATFLILAGIAVLAVVFVILFVPETQGLTFLE 395 (421)
Q Consensus 316 ~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~et~~~~~~~ 395 (421)
+|+.|-..+|++|++.|+.+..+..+.+.+.+++....++++.+..|. ..|+.+.+.+.+..++.++++||||||+.+|
T Consensus 386 gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g~-~~filF~i~~~~~~i~~~~~lPETkgr~~~e 464 (485)
T KOG0569|consen 386 GPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQNVIGP-YVFILFVIPLAIFLIYLYRYLPETKGRTPYE 464 (485)
T ss_pred CchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHHHHHhCcccCCCCHHH
Confidence 999999999999999999999999999999999999999999999986 7888999999999999999999999999999
Q ss_pred HHHHHhcc
Q 014616 396 VEQMWKER 403 (421)
Q Consensus 396 ~~~~~~~~ 403 (421)
+.++.+++
T Consensus 465 I~~~~~~~ 472 (485)
T KOG0569|consen 465 IIEELEKR 472 (485)
T ss_pred HHHHHHhC
Confidence 87766665
|
|
| >KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-40 Score=325.42 Aligned_cols=400 Identities=42% Similarity=0.688 Sum_probs=323.9
Q ss_pred hhhhHHHHhhhhhhhcccchhHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHhhhhhhhhhHHHHHhhcCCCCCccc
Q 014616 3 LVGAIVGAASGGWINDAYGRKKATLLADVVFTAGAIIMAAAPDPYVLILGRLLVGLGVGIASVTAPVYIAEASPSEVRGG 82 (421)
Q Consensus 3 ~ig~~~g~~~~g~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~s~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg~ 82 (421)
.+|.++|+++.|+++|++|||+.+.++.+++.++++++++++|+.+++++|+++|+|.|........+++|..|++.||.
T Consensus 99 ~lga~~g~l~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~~a~~~~~l~~GR~l~G~g~G~~~~~~piy~sEiap~~~RG~ 178 (513)
T KOG0254|consen 99 NLGALVGSLLAGRLGDRIGRKKTLLLAVVLFLIGAIIIALAPSWYQLIVGRILTGLGVGGASVLAPVYISEIAPAHIRGT 178 (513)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccchhhhhhcchhhHhhcCChhhhHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhchHHHHHHHHHHHHHHHhhhcccCCccchHHHHhhHHHHHHHHHHhhcCCcChHHHHhcCCHHHHHHHHHHhcC--hh
Q 014616 83 LVSTNVLMITSGQFLSYLVNLAFTEVPGTWRWMLGVSAVPAIIQFVLMLFMPESPRWLFMKSDKEKAILVLSKIYD--IA 160 (421)
Q Consensus 83 ~~~~~~~~~~~g~~l~~~~~~~~~~~~~~Wr~~f~~~~~~~l~~~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~--~~ 160 (421)
..+..+....+|..++..++........+||..+.+..+++++..+...++||||+|+..+++.+++...+..+.. ..
T Consensus 179 l~~~~~l~~~~Gi~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~~pesp~~L~~~g~~~~a~~~l~~l~g~~~~ 258 (513)
T KOG0254|consen 179 LVSLYQLFITIGILLGYCINYGTSKVYAGWRIPLGLALIPAVILALGMLFLPESPRWLIEKGRLEEAKRSLKRLRGLSPE 258 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhccCCccHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHcCChHHHHHHHHHHhCCCCc
Confidence 9999999999999999777766543323599999999999998877788899999999999999999999988888 33
Q ss_pred hhHHHHHHHHHHHHHHHh-hcccccHHHhhcchhHHHHHHHHHHHHHHHhhcCcceehhchHHHHHHcCCCChHHHHHHH
Q 014616 161 RLEDEIDHLSAAAEEELR-KKKTVRYLDVFKSKEIRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQMAGFQSNQLALLLS 239 (421)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 239 (421)
+...+.++++.....+.. .+....+.++++ |..+...........++++.+++...+|.+.+++..|.+... ....
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~i~~~l~~fqq~tG~~~~~~Y~~~if~~~g~~~~~--~~~~ 335 (513)
T KOG0254|consen 259 DVEVELELLKIKLLVEAEVAEGKASWGELFS-PKVRKRLIIGLLLQLFQQLTGINYVFYYSTTIFKSAGLKSDT--FLAS 335 (513)
T ss_pred chHHHHHHHHHHHHHhhhcccccccHHHhcC-cchHHHHHHHHHHHHHHHHhCCceEEeehHHHHHhcCCCCch--HHHH
Confidence 444444444311111111 111123555555 555666666777788889999999999999999999888653 3344
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCChhHHHHhhHHHHHHHHHHHHHHhhCCCCC-CCcchhHHHHHHHHHHHHHhhcccccc
Q 014616 240 LAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSAS-SSGVYGWIAVIGLALYIAFFAPGMGPV 318 (421)
Q Consensus 240 ~~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~ 318 (421)
......+++++.++.++.||.|||+.++.+...+.++.++++.......... ......+..+....++...+..+.+++
T Consensus 336 ~~~~~v~~~~t~~~~~lvd~~gRr~lll~s~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~g~g~v 415 (513)
T KOG0254|consen 336 IILGVVNFLGTLVATYLVDRFGRRKLLLFGAAGMSICLVILAVVGVFALYYPNSSKGAGWLAIVFLCLFIFSFAIGWGPV 415 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccHHHHHHhHHHHHHHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHHHHHhcccccc
Confidence 4455567888889999999999999999999998888888876554332211 223345666777777888889999999
Q ss_pred cceeccccCccchhhhhhHHHHHHHHHHHHHHHHHhHHHHHHcCcchhhHHHHHHHHHHHH-HHHhhccCCCCCCHHHHH
Q 014616 319 PWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELVGTGATFLILAGIAVLAVV-FVILFVPETQGLTFLEVE 397 (421)
Q Consensus 319 ~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~et~~~~~~~~~ 397 (421)
.|.+.+|.+|.+.|+.+.++....+.+.++.....+....+..+.+..|.++++.+.+... ..+++.||||++++||++
T Consensus 416 ~w~~~sEifp~~~r~~~~s~~~~~n~~~~~~v~~~~~~~~~~~~~~~~f~~f~~~~~~~~~~fv~~~~pETkg~sleei~ 495 (513)
T KOG0254|consen 416 PWVIVSEIFPLRLRSKGASLAVAVNWLWNFLISFFFPFITEALGIGGTFGYFGGICLLSLIIFVFFFVPETKGLTLEEIN 495 (513)
T ss_pred hhhhhhccCcHhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHheEEcccCCCCcHHHHH
Confidence 9999999999999999999999999999998888877777665545677888887777777 678889999999999999
Q ss_pred HHHhcccc
Q 014616 398 QMWKERAW 405 (421)
Q Consensus 398 ~~~~~~~~ 405 (421)
+.++.+.+
T Consensus 496 ~~~~~~~~ 503 (513)
T KOG0254|consen 496 ELFEEGIK 503 (513)
T ss_pred HHHHcCCc
Confidence 87766544
|
|
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-39 Score=315.40 Aligned_cols=384 Identities=22% Similarity=0.337 Sum_probs=259.3
Q ss_pred chhhhHHHHhhhhhhhcccchhHHHHHHHHHHHHHHHHHHhcCC------hhHHHHHHHHHHhhhhhhhhhHHHHHhhcC
Q 014616 2 ALVGAIVGAASGGWINDAYGRKKATLLADVVFTAGAIIMAAAPD------PYVLILGRLLVGLGVGIASVTAPVYIAEAS 75 (421)
Q Consensus 2 ~~ig~~~g~~~~g~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~s------~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~ 75 (421)
..+|.++|+++.|+++||+|||+++.++.+++.+++++++++++ +..++++|+++|++.|...+....++.|++
T Consensus 65 ~~ig~~ig~~~~g~l~d~~Grr~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~ 144 (502)
T TIGR00887 65 ASIGTLAGQLFFGWLADKLGRKRVYGMELIIMIIATVASGLSPGSSPKSVMATLCFWRFWLGVGIGGDYPLSAIITSEFA 144 (502)
T ss_pred HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHccCcccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhc
Confidence 46789999999999999999999999999999999999998876 788999999999999999999999999999
Q ss_pred CCCCccchhchHHHHHHHHHHHHHHHhhhccc----------------------CCccchHHHHhhHHHHHHHHHHhhcC
Q 014616 76 PSEVRGGLVSTNVLMITSGQFLSYLVNLAFTE----------------------VPGTWRWMLGVSAVPAIIQFVLMLFM 133 (421)
Q Consensus 76 p~~~rg~~~~~~~~~~~~g~~l~~~~~~~~~~----------------------~~~~Wr~~f~~~~~~~l~~~~~~~~~ 133 (421)
|+++|++.++........|.++++.++..+.. ...+||++|.+.++++++.++..+++
T Consensus 145 p~~~Rg~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip~~i~~~~~~~l 224 (502)
T TIGR00887 145 TKKWRGAMMAAVFAMQGFGILAGAIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPALLALYFRLTI 224 (502)
T ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccchhcccHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999999999888888888887766653311 11259999999999998888888899
Q ss_pred CcChHHHHhcCCHH-HHHHHHHHhcChhhhHHHHHHHHHHHHHHHhhcccccHHHhhcch---hHHHHHHHHHHHHHHHh
Q 014616 134 PESPRWLFMKSDKE-KAILVLSKIYDIARLEDEIDHLSAAAEEELRKKKTVRYLDVFKSK---EIRLAFLAGAGLQAFQQ 209 (421)
Q Consensus 134 ~esp~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~ 209 (421)
||||+|+..+++++ ++.+.+.+....+.. ++.++..+.+ ++ ++....+++++++++ +.+...+... ...+..
T Consensus 225 pESpr~l~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~-~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~ 300 (502)
T TIGR00887 225 PETPRYTADVAKDVEQAASDMSAVLQVKIE-AEPDEVEKAS-TA-VEVPKASWSDFFTHFFKWRHGKHLLGTA-GSWFLL 300 (502)
T ss_pred CCCHHHHHHhCcchHHHHHHHHHHhccccc-cCcccccchh-cc-ccchhhhHHHHHHHHhhhHHHHHHHHHH-HHHHHH
Confidence 99999998776654 344444443321110 0001110000 00 000112456666532 2212212111 111212
Q ss_pred hcCcceehhchHHHHHHcCCCChHHH-----------HHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHhhHHHHHHHH
Q 014616 210 FTGINTVMYYSPTIVQMAGFQSNQLA-----------LLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLV 278 (421)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~g~~~~~~~-----------~~~~~~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~ 278 (421)
....+....+.|.++++.|++....+ ...........+++.+++++++||+|||+.++.+.....++..
T Consensus 301 ~~~~y~~~~~~p~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~gRR~~l~~~~~~~~~~~~ 380 (502)
T TIGR00887 301 DIAFYGVNLNQKVILSAIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDIIGRKPIQLMGFFILTVLFF 380 (502)
T ss_pred HHHHHccccccHHHHHHHcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHH
Confidence 22233344567888887777543211 1112223334567888999999999999987766655555544
Q ss_pred HHHHHHhhCCCCCCCcchhHHHHHHHHHHHHHhhcccccccceeccccCccchhhhhhHHHHHHHHHHHHHHHHHhHHHH
Q 014616 279 LLSWAFISGSSASSSGVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVA 358 (421)
Q Consensus 279 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~ 358 (421)
++..... ... . .... ....++..++..+..+..+++.+|.+|++.|+++.|+.++.+++++++++.+++.+.
T Consensus 381 ~l~~~~~--~~~-~---~~~~--~~~~~~~~~~~~~~~~~~~~~~~E~~p~~~R~~~~g~~~~~~~~~~~~~~~~~~~l~ 452 (502)
T TIGR00887 381 VLGFAYN--HLS-T---HGFL--AIYVLAQFFANFGPNATTFIVPGEVFPTRYRSTAHGISAASGKAGAIIGQFGFLYLA 452 (502)
T ss_pred HHHHHHH--hcc-h---hHHH--HHHHHHHHHHhcCCCchhhhhhhccCchhHHHHHHHHHHHHhhhHHHHHHHHhhhhh
Confidence 4433211 100 0 0111 112222233455667788888899999999999999999999999999999998887
Q ss_pred HHc----------CcchhhHHHHHHHHHHHHHHHhhccCCCCCCHHHHHH
Q 014616 359 ELV----------GTGATFLILAGIAVLAVVFVILFVPETQGLTFLEVEQ 398 (421)
Q Consensus 359 ~~~----------g~~~~~~~~~~~~~~~~~~~~~~~~et~~~~~~~~~~ 398 (421)
+.. +....|+++++.++++.+. .+++||||++++||+++
T Consensus 453 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~-~~~lpEt~~~~leei~~ 501 (502)
T TIGR00887 453 QHGDPTKGYPTGIWMGHVLEIFALFMFLGILF-TLLIPETKGKSLEELSG 501 (502)
T ss_pred ccccccccccccccchHHHHHHHHHHHHHHHH-heEeccCCCCCHHhhhC
Confidence 632 3345677887777766554 46779999999988764
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-37 Score=301.01 Aligned_cols=386 Identities=33% Similarity=0.599 Sum_probs=269.3
Q ss_pred chhhhHHHHhhhhhhhcccchhHHHHHHHHHHHHHHHHHHhc---------CC---hhHHHHHHHHHHhhhhhhhhhHHH
Q 014616 2 ALVGAIVGAASGGWINDAYGRKKATLLADVVFTAGAIIMAAA---------PD---PYVLILGRLLVGLGVGIASVTAPV 69 (421)
Q Consensus 2 ~~ig~~~g~~~~g~l~dr~Grr~~~~~~~~l~~i~~~~~~~~---------~s---~~~l~~~R~l~G~g~g~~~~~~~~ 69 (421)
..+|.++|+++.|+++||+|||+++.++.+++.++++.++++ ++ +..+++.|+++|++.|...+...+
T Consensus 64 ~~ig~~~~~~~~G~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~ 143 (479)
T PRK10077 64 ALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIGGIGVGLASMLSPM 143 (479)
T ss_pred HHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHHhhhHhHHhhHHHH
Confidence 468999999999999999999999999999999999888763 22 467889999999999999999999
Q ss_pred HHhhcCCCCCccchhchHHHHHHHHHHHHHHHhhhccc-------CCccchHHHHhhHHHHHHHHHHhhcCCcChHHHHh
Q 014616 70 YIAEASPSEVRGGLVSTNVLMITSGQFLSYLVNLAFTE-------VPGTWRWMLGVSAVPAIIQFVLMLFMPESPRWLFM 142 (421)
Q Consensus 70 ~i~e~~p~~~rg~~~~~~~~~~~~g~~l~~~~~~~~~~-------~~~~Wr~~f~~~~~~~l~~~~~~~~~~esp~~~~~ 142 (421)
+++|++|+++||++++........|..+++.++..... ...+||+.|++.++++++..+..+++||+|+|+..
T Consensus 144 ~i~e~~~~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~~~l~~s~~~l~~ 223 (479)
T PRK10077 144 YIAEIAPAHIRGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNTDGWRYMFASEAIPALLFLMLLYFVPETPRYLMS 223 (479)
T ss_pred HHHhhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccCChHHHHHHHHHHHHHHHHHHHcCCCCcHHHHH
Confidence 99999999999999999988888888887766554321 12369999999888887776667789999999877
Q ss_pred cCCHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHhhcccccHHHhhcchhHHHHHHHHHHHHHHHhhcCcceehhchHH
Q 014616 143 KSDKEKAILVLSKIYDIARLEDEIDHLSAAAEEELRKKKTVRYLDVFKSKEIRLAFLAGAGLQAFQQFTGINTVMYYSPT 222 (421)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (421)
+++.+++....++....+......++..+.... +.++ ....+... ............+.+..+.+...++.|.
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~---~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 296 (479)
T PRK10077 224 RGKQEQAEGILRKIMGNTLATQALQEIKHSLDH--GRKT---GGKLLMFG--VGVIVIGVMLSVFQQFVGINVVLYYAPE 296 (479)
T ss_pred cCCHHHHHHHHHHHcCChhHHHHHHHHHHHHHH--hhhh---hhhhcchh--HHHHHHHHHHHHHHHHhChhHHHHHHHH
Confidence 777776665555544332221111111111000 0000 01111110 1111112222334444455556677888
Q ss_pred HHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHhhHHHHHHHHHHHHHHhhCCCCCCCcchhHHHHH
Q 014616 223 IVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVI 302 (421)
Q Consensus 223 ~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 302 (421)
+.++.|.+..... ..........+++.+++++++||++||+.++.+..+..++..++...... . .. ......
T Consensus 297 i~~~~g~~~~~~~-~~~~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~~-~---~~---~~~~~~ 368 (479)
T PRK10077 297 IFKTLGASTDIAL-LQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYT-Q---AP---GIVALL 368 (479)
T ss_pred HHHHcCCCCchHH-HHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHhc-C---cc---cHHHHH
Confidence 8888887755433 34444555678899999999999999999887777666665554432111 1 10 112222
Q ss_pred HHHHHHHHhhcccccccceeccccCccchhhhhhHHHHHHHHHHHHHHHHHhHHHH------HHcCcchhhHHHHHHHHH
Q 014616 303 GLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVA------ELVGTGATFLILAGIAVL 376 (421)
Q Consensus 303 ~~~~~~~~~~~g~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~------~~~g~~~~~~~~~~~~~~ 376 (421)
....+...+..+..|..+++.+|.+|++.|+++.|+.+..+++++++++..++... +..++...|+++++.+++
T Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (479)
T PRK10077 369 SMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVL 448 (479)
T ss_pred HHHHHHHHHhccccchhHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhhccCccHHHHHHHHHHH
Confidence 22333333333455777889999999999999999999999999999888776554 356666778888888777
Q ss_pred HHHHHHhhccCCCCCCHHHHHHHHhc
Q 014616 377 AVVFVILFVPETQGLTFLEVEQMWKE 402 (421)
Q Consensus 377 ~~~~~~~~~~et~~~~~~~~~~~~~~ 402 (421)
+.+..+++.||||++++||++++++.
T Consensus 449 ~~~~~~~~~~e~~~~~~~~~~~~~~~ 474 (479)
T PRK10077 449 AALFMWKFVPETKGKTLEEMEALWEP 474 (479)
T ss_pred HHHHHHhccccCCCCCHHHHHHHHhh
Confidence 77777778899999999988776543
|
|
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-44 Score=349.85 Aligned_cols=392 Identities=37% Similarity=0.668 Sum_probs=289.1
Q ss_pred chhhhHHHHhhhhhhhcccchhHHHHHHHHHHHHHHHHHHhcC---ChhHHHHHHHHHHhhhhhhhhhHHHHHhhcCCCC
Q 014616 2 ALVGAIVGAASGGWINDAYGRKKATLLADVVFTAGAIIMAAAP---DPYVLILGRLLVGLGVGIASVTAPVYIAEASPSE 78 (421)
Q Consensus 2 ~~ig~~~g~~~~g~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~---s~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~ 78 (421)
..+|.++|++++|.++||+|||+.+.++.++..++++++++++ |++.+.++|+++|++.|+..+....++.|..|++
T Consensus 55 ~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~R~~~G~~~g~~~~~~~~~~~E~~~~~ 134 (451)
T PF00083_consen 55 FFIGAIVGALIFGFLADRYGRKPALIISALLMIIGSILIAFAPSYNNFWMLLIGRFLIGFGIGGAYVVSPIYISEIAPPK 134 (451)
T ss_pred HHhhhccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 4689999999999999999999999999999999999999999 9999999999999999999999999999999999
Q ss_pred CccchhchHHHHHHHHHHHHHHHhhhcccCC--ccchHHHHhhHHHHHHHHHHhhcCCcChHHHHhcCCHHHHHHHHHHh
Q 014616 79 VRGGLVSTNVLMITSGQFLSYLVNLAFTEVP--GTWRWMLGVSAVPAIIQFVLMLFMPESPRWLFMKSDKEKAILVLSKI 156 (421)
Q Consensus 79 ~rg~~~~~~~~~~~~g~~l~~~~~~~~~~~~--~~Wr~~f~~~~~~~l~~~~~~~~~~esp~~~~~~~~~~~~~~~~~~~ 156 (421)
+|++..+........|.+++...+....... ..||+.+.+.++++++.++...++||||+|+..+++.+++++.+++.
T Consensus 135 ~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~l~~~~~~~~~pESP~wL~~~~~~~~A~~~l~~~ 214 (451)
T PF00083_consen 135 HRGFLSSLFQLFWALGILLASLIGYIVSYYSDNWGWRILLIFGAIPSLLVLLLRFFLPESPRWLLSKGRDEEAEKVLRKL 214 (451)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccceecccccccccccccccc
Confidence 9999999888888888888877665442221 24999999999988887777788999999999999999888887775
Q ss_pred cChhhhHHHHHHHHHHHHHHHhhcccccHHHhhcchhHHHHHHHHHHHHHHHhhcCcceehhchHHHHHHcCCCChHHHH
Q 014616 157 YDIARLEDEIDHLSAAAEEELRKKKTVRYLDVFKSKEIRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQMAGFQSNQLAL 236 (421)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 236 (421)
.+.+..+++.++..++.++ ..+++..++++++++..+...........+..+.+.+...+|.|.+.+..+.+.. .
T Consensus 215 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~i~~~~~~~~~---~ 289 (451)
T PF00083_consen 215 RGKEIEDEEIEEIKAEKKE--SQESKASWRDLFRNKKYRKRLLIALLLQFFQQFSGINFIFYYSPSIFENAGISNS---F 289 (451)
T ss_pred ccccccccccccccccccc--ccccceeeeeccccccccccccccccccccccccccccccccccccccccccccc---c
Confidence 4443222222222211111 1111144667777755333333333333444455556666778888877777655 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHhhHHHHHHHHHHHHHHhhCCCCCCCcchhHHHHHHHHHHHHHhhcccc
Q 014616 237 LLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLALYIAFFAPGMG 316 (421)
Q Consensus 237 ~~~~~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 316 (421)
...........++.+++.+++||+|||+.++.+.....++.+.+......... .+.......+.....+...+..+.+
T Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~GRr~~~i~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~i~~~~l~~~~~~~g~~ 367 (451)
T PF00083_consen 290 LATLILGLVNFLGTLLAIFLIDRFGRRKLLIIGLLLMAICSLILGIIFFLGVS--SSSWWSILSIVFLALFFAFFSLGWG 367 (451)
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccc--cccccccccceeeeecccccccccc
Confidence 22233334466778888899999999998877766655555544300101111 1000011222223333445556778
Q ss_pred cccceeccccCccchhhhhhHHHHHHHHHHHHHHHHHhHHHHHHcCcchhhHHHHHHHHHHHHHHHhhccCCCCCCHHHH
Q 014616 317 PVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELVGTGATFLILAGIAVLAVVFVILFVPETQGLTFLEV 396 (421)
Q Consensus 317 ~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~et~~~~~~~~ 396 (421)
++.+.+.+|.+|++.|+++.++....+++++++.+...+...+..+....+.++++.+++..++.+++.||||++++||+
T Consensus 368 ~~~~~~~~ElfPt~~R~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~i~~i~~~~~lpET~g~~l~ei 447 (451)
T PF00083_consen 368 PLPWIYTAELFPTKVRSTGIGLSYAVGRIGGFIIPFLFPYLFNNLGGWGVFLIFAGVCLIAIIFVYFFLPETKGKTLEEI 447 (451)
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccchhhHHHHHHHHhheeEEEeeCCCCCHHHH
Confidence 89999999999999999999999999999999988888887777775678888888888888888899999999999999
Q ss_pred HHHH
Q 014616 397 EQMW 400 (421)
Q Consensus 397 ~~~~ 400 (421)
++++
T Consensus 448 ~~~f 451 (451)
T PF00083_consen 448 QEMF 451 (451)
T ss_pred HhhC
Confidence 8763
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-36 Score=302.26 Aligned_cols=376 Identities=21% Similarity=0.279 Sum_probs=260.7
Q ss_pred chhhhHHHHhhhhhhhcccchhHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHhhhhhhhhhHHHHHhhcCCCCCcc
Q 014616 2 ALVGAIVGAASGGWINDAYGRKKATLLADVVFTAGAIIMAAAPDPYVLILGRLLVGLGVGIASVTAPVYIAEASPSEVRG 81 (421)
Q Consensus 2 ~~ig~~~g~~~~g~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~s~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg 81 (421)
..+|+++|++++|+++||+|||++++++.+++++++++++++++++.++++|+++|++.|+..+....++.|++|+++||
T Consensus 211 ~~lG~iiG~li~G~LsDR~GRR~~lii~lil~~i~~ll~afa~s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~Rg 290 (742)
T TIGR01299 211 VYLGMMVGAFFWGGLADKLGRKQCLLICLSVNGFFAFFSSFVQGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRG 290 (742)
T ss_pred HHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhchHHHHHHHHHHHHHHHhhhcccC------------CccchHHHHhhHHHHHHHHHHhhcCCcChHHHHhcCCHHHH
Q 014616 82 GLVSTNVLMITSGQFLSYLVNLAFTEV------------PGTWRWMLGVSAVPAIIQFVLMLFMPESPRWLFMKSDKEKA 149 (421)
Q Consensus 82 ~~~~~~~~~~~~g~~l~~~~~~~~~~~------------~~~Wr~~f~~~~~~~l~~~~~~~~~~esp~~~~~~~~~~~~ 149 (421)
...+....+..+|.++++.++..+... ..+||+.+++.++++++.++..+++||||+|+..+++.+++
T Consensus 291 ~~~g~~~~~~~iG~ila~~la~~il~~~G~~~~~g~~~~~~gWR~l~~i~~lp~ll~ll~~~~lPESPrwL~~~gr~~eA 370 (742)
T TIGR01299 291 EHLSWLCMFWMIGGIYAAAMAWAIIPHYGWSFQMGSAYQFHSWRVFVIVCAFPCVFAIGALTFMPESPRFFLENGKHDEA 370 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccchhccccccccccHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHCCCHHHH
Confidence 999988888888888877655443221 12599999999988888877788899999999999999999
Q ss_pred HHHHHHhcChhhhH---H-HH---HHHHHHHHHH----Hhhcc------------------cccHHHhhcchhHHHHHHH
Q 014616 150 ILVLSKIYDIARLE---D-EI---DHLSAAAEEE----LRKKK------------------TVRYLDVFKSKEIRLAFLA 200 (421)
Q Consensus 150 ~~~~~~~~~~~~~~---~-~~---~~~~~~~~~~----~~~~~------------------~~~~~~~~~~~~~~~~~~~ 200 (421)
.+.+.++...+... + +. ++........ .+.+. ...+.++++.+..+..++.
T Consensus 371 ~~iL~~i~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lf~~~~~~~tl~l 450 (742)
T TIGR01299 371 WMILKLIHDTNMRAKGHPEKVFSVNHIKTIHQEDELIEIESDTGTWYQRCFVRALSEGGGIWGNFLRCFNPEVREITIKL 450 (742)
T ss_pred HHHHHHHhcCCCCCcCchhHHHHHHHHHHhhhhhhhhcccccccchhhcchhhhhhhhhhHHHHHHHHcCccHHHHHHHH
Confidence 99888887654211 0 00 0010000000 00000 0123455555544443333
Q ss_pred HHHHHHHHhhcCcceehhchHHHHHHc------------------------------------------CC---------
Q 014616 201 GAGLQAFQQFTGINTVMYYSPTIVQMA------------------------------------------GF--------- 229 (421)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------------------g~--------- 229 (421)
.. .++...++++.+..+.|.+++.. |+
T Consensus 451 ~~--~wf~~~~~yygl~~w~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 528 (742)
T TIGR01299 451 MG--VWFTLSFGYYGLSVWFPDMIKHLQADDYAALTKNFPGDKVAHFSFNFTLENQIHRGGEYDNDKFIGLKFKSVSFED 528 (742)
T ss_pred HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccchhccccccchhhhhccccccccchhhccccccccccc
Confidence 22 23334445566666677654321 00
Q ss_pred -------------------------------------------------------C-----C---hHHHHHHHHHHHHHH
Q 014616 230 -------------------------------------------------------Q-----S---NQLALLLSLAVAGTN 246 (421)
Q Consensus 230 -------------------------------------------------------~-----~---~~~~~~~~~~~~~~~ 246 (421)
+ . .............+.
T Consensus 529 ~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~l~~l~~ 608 (742)
T TIGR01299 529 SLFEECTFDDVTSSNTFFKNCTFIDTLFENTDFEEYKFIDSEFQNCSFLHNKEGCPIDFDGDDEGAYMIYFVNFLGTLAV 608 (742)
T ss_pred ccccccceeeccccchhhhccchhhhhccccchhhhhhhhhhhhhccccccCCccCccCCccchhHHHHHHHHHHHHHHH
Confidence 0 0 001122334444567
Q ss_pred HHHHHHHHHHHhhcCChhHHHHhhHHHHHHHHHHHHHHhhCCCCCCCcchhHHHHHHHHHHHHHhhcccccccceecccc
Q 014616 247 AVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEV 326 (421)
Q Consensus 247 ~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~e~ 326 (421)
+++.+++|+++||+|||++++.+..+..++.+++.+. . . .. .. +.... ...++..+..+..+++.+|.
T Consensus 609 i~G~il~g~L~Dr~GRr~~l~~~~~lsai~~ll~~~~--~-s------~~-~l-l~~~~-l~g~~~~~~~~~~~a~~aEl 676 (742)
T TIGR01299 609 LPGNIVSALLMDKIGRLRMLAGSMVLSCISCFFLSFG--N-S------ES-AM-IALLC-LFGGLSIAAWNALDVLTVEL 676 (742)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHH--c-c------HH-HH-HHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999877766666555444321 1 0 01 11 11111 11222233456667888999
Q ss_pred CccchhhhhhHHHHHHHHHHHHHHHHHhHHHHHHcCcchhhHHHHHHHHHHHHHHHhhccCCCCCCH
Q 014616 327 YPEQYRGICGGMSATVNWISNLIVAQTFLTVAELVGTGATFLILAGIAVLAVVFVILFVPETQGLTF 393 (421)
Q Consensus 327 ~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~et~~~~~ 393 (421)
+|++.|+++.|+.++.+++|+++++.+.+.+.+. +...+|+++++..++++++.+ ++|||+++.+
T Consensus 677 ~Pt~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~~-~~~~pf~i~a~~lll~~ll~~-~LPET~~~~l 741 (742)
T TIGR01299 677 YPSDKRATAFGFLNALCKAAAVLGILIFGSFVGI-TKAAPILFASAALACGGLLAL-KLPDTRGQVL 741 (742)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHHHHH-hCCCCccccc
Confidence 9999999999999999999999999988877664 334567777776666555444 5699998864
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-34 Score=285.06 Aligned_cols=355 Identities=17% Similarity=0.190 Sum_probs=223.6
Q ss_pred chhhhHHHHhhhhhhhcccchhHHHHHHHHHHHHHHHHHHhcCChhH--------HHHHHHHHHhhhhhhhhhHHHHHhh
Q 014616 2 ALVGAIVGAASGGWINDAYGRKKATLLADVVFTAGAIIMAAAPDPYV--------LILGRLLVGLGVGIASVTAPVYIAE 73 (421)
Q Consensus 2 ~~ig~~~g~~~~g~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~s~~~--------l~~~R~l~G~g~g~~~~~~~~~i~e 73 (421)
.++|+.+|++++|+++||+|||+++.++.++++++++++++++|+.. +++.|+++|++.|+..+....++.|
T Consensus 66 ~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~~l~~i~~~~~a~~~~~~~~g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e 145 (490)
T PRK10642 66 PFLIRPLGGLFFGMLGDKYGRQKILAITIVIMSISTFCIGLIPSYATIGIWAPILLLLCKMAQGFSVGGEYTGASIFVAE 145 (490)
T ss_pred HHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHH
Confidence 35788999999999999999999999999999999999999999875 8899999999999999999999999
Q ss_pred cCCCCCccchhchHHHHHHHHHHHHHHHhhhccc-------CCccchHHHHhhHHHHHHHHHHhhcCCcChHHHHhcCCH
Q 014616 74 ASPSEVRGGLVSTNVLMITSGQFLSYLVNLAFTE-------VPGTWRWMLGVSAVPAIIQFVLMLFMPESPRWLFMKSDK 146 (421)
Q Consensus 74 ~~p~~~rg~~~~~~~~~~~~g~~l~~~~~~~~~~-------~~~~Wr~~f~~~~~~~l~~~~~~~~~~esp~~~~~~~~~ 146 (421)
++|+|+||+..+....+...|..++..+...+.. ...+||+.|++.++++++.+++...+||+|+|...+++.
T Consensus 146 ~~p~~~Rg~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~~~~~~~gWR~~f~i~~~~~l~~~~~~~~~~esp~~~~~~~~~ 225 (490)
T PRK10642 146 YSPDRKRGFMGSWLDFGSIAGFVLGAGVVVLISTIVGEANFLDWGWRIPFFIALPLGIIGLYLRHALEETPAFQQHVDKL 225 (490)
T ss_pred hCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhcCccHHHHHHHHHHHHHHHHHHHHcCCCChhHHHHHHhh
Confidence 9999999999888877777777777654432211 123699999998877776666667889999875322111
Q ss_pred HHHHHHHHHhcChhhhHHHHHHHHHHHHHHHhhcccccHHHhhcchhHHHHHHHHHHHHHHHhhcCcceehhchHHHHH-
Q 014616 147 EKAILVLSKIYDIARLEDEIDHLSAAAEEELRKKKTVRYLDVFKSKEIRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQ- 225 (421)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 225 (421)
++.. .+. ..+++..++.+++++.. +.. ...... .+.....++....+.|.+++
T Consensus 226 ~~~~----------------------~~~-~~~~~~~~~~~~~~~~~-~~~-~~~~~~-~~~~~~~~~~~~~~~p~~l~~ 279 (490)
T PRK10642 226 EQGD----------------------REG-LQDGPKVSFKEIATKHW-RSL-LTCIGL-VIATNVTYYMLLTYMPSYLSH 279 (490)
T ss_pred hhhc----------------------ccc-ccccccCCHHHHHHHhH-HHH-HHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 1000 000 00011223445554321 111 111111 11111223334446677764
Q ss_pred HcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHhhHHHHHHHHHHHHHHhhCCCCCCCcchhHHHHHHHH
Q 014616 226 MAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLA 305 (421)
Q Consensus 226 ~~g~~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (421)
..|.+...... .........+++.++.|+++||+|||+.+..+.....+....+.. .... .+ . .....+..
T Consensus 280 ~~g~s~~~~~~-~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~-~~~~--~~----~-~~~~~~~~ 350 (490)
T PRK10642 280 NLHYSEDHGVL-IIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFI-LINS--NV----I-GLIFAGLL 350 (490)
T ss_pred hcCCCHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHH-HHhC--CC----H-HHHHHHHH
Confidence 56776654433 333444456788899999999999999766554322222111111 1111 10 1 11111111
Q ss_pred HHHHHhhcccccccceeccccCccchhhhhhHHHHHHHHHHHHHHHHHhHHHHHHcC-cchhhHHHHHHHHHHHHHHHhh
Q 014616 306 LYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELVG-TGATFLILAGIAVLAVVFVILF 384 (421)
Q Consensus 306 ~~~~~~~~g~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~ 384 (421)
+...+... .......+..|.+|++.|+++.|..+..+.+++.+++.+.+.+.+..+ +..++++....+++..+. .++
T Consensus 351 ~~g~~~~~-~~g~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~~~~~~~~~~~~~~~~~i~~~~-~~~ 428 (490)
T PRK10642 351 MLAVILNC-FTGVMASTLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAAWLVESTQNLMMPAYYLMVVAVIGLIT-GVT 428 (490)
T ss_pred HHHHHHHH-HHHHHHHHHHHHCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHH-HHH
Confidence 11111111 112233556789999999999998777777777888888887776554 344555555555544443 345
Q ss_pred ccCCCCCCH
Q 014616 385 VPETQGLTF 393 (421)
Q Consensus 385 ~~et~~~~~ 393 (421)
.|||+++..
T Consensus 429 ~pes~~~~~ 437 (490)
T PRK10642 429 MKETANRPL 437 (490)
T ss_pred hccccCCCC
Confidence 699987654
|
|
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-33 Score=274.49 Aligned_cols=390 Identities=39% Similarity=0.681 Sum_probs=266.8
Q ss_pred chhhhHHHHhhhhhhhcccchhHHHHHHHHHHHHHHHHHHhcC---ChhHHHHHHHHHHhhhhhhhhhHHHHHhhcCCCC
Q 014616 2 ALVGAIVGAASGGWINDAYGRKKATLLADVVFTAGAIIMAAAP---DPYVLILGRLLVGLGVGIASVTAPVYIAEASPSE 78 (421)
Q Consensus 2 ~~ig~~~g~~~~g~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~---s~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~ 78 (421)
..++..+++++.|+++||+|||+++.++.+++.++++++.+.+ +++.+++.|+++|+|.+...+....++.|++|++
T Consensus 80 ~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~ 159 (481)
T TIGR00879 80 FLVGGFIGALFAGWLSDRFGRKKSLLIIALLFVIGAILMGLAAFALSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKA 159 (481)
T ss_pred HHHHHHHHHHHhhHhhhhhhhHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHhHHHHHHHccCChh
Confidence 4578899999999999999999999999999999999996644 3458999999999999999999999999999999
Q ss_pred CccchhchHHHHHHHHHHHHHHHh---hhcccCCccchHHHHhhHHHHHHHHHHhhcCCcChHHHHhcCCHHHHHHHHHH
Q 014616 79 VRGGLVSTNVLMITSGQFLSYLVN---LAFTEVPGTWRWMLGVSAVPAIIQFVLMLFMPESPRWLFMKSDKEKAILVLSK 155 (421)
Q Consensus 79 ~rg~~~~~~~~~~~~g~~l~~~~~---~~~~~~~~~Wr~~f~~~~~~~l~~~~~~~~~~esp~~~~~~~~~~~~~~~~~~ 155 (421)
+|++..+........|..+++.++ ...... .+||+.|++.++..++.++..+++||+|++...+++.++..+....
T Consensus 160 ~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~-~~w~~~f~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 238 (481)
T TIGR00879 160 LRGALTSLYQLAITFGILVAYGFGSGKVSLNNT-LGWRIPLGLQLIPAGLLFLGLFFLPESPRWLVGKGRVEEARKSLAR 238 (481)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCC-ccHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHcCChHHHHHHHHH
Confidence 999999999999999999998887 433333 3699999997777766666677889999887766665554443333
Q ss_pred hcChhhhHHHH-H---HHHHHHHHHHhhcccccHHHhhcchh-HHHHHHHHHHHHHHHhhcCcceehhchHHHHHHcCCC
Q 014616 156 IYDIARLEDEI-D---HLSAAAEEELRKKKTVRYLDVFKSKE-IRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQMAGFQ 230 (421)
Q Consensus 156 ~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 230 (421)
....+..+.+. + ......+.+.+.. ...+.+.++..+ .............+..........++.|.+.++.|++
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 317 (481)
T TIGR00879 239 LRGTSGEDKELLDELELIDIKRSIEKRSV-QPSWGSLFSSTRRIRRRLFLGVVLQWFQQFTGINAIMYYSPTIFENAGVS 317 (481)
T ss_pred HhCCCCCcHHHHHHHHHHHHHHHHHHhhc-cccHHHHHhcCchhHHHHHHHHHHHHHHHHhCCeehHHHHHHHHHHcCCC
Confidence 22211111110 0 0000000111111 111333333211 1111111122223333444555667788888888888
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHhhHHHHHHHHHHHHHHhhCCCCCCCcchhHHHHHHHHHHHHH
Q 014616 231 SNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLALYIAF 310 (421)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (421)
.... ...........+++.+++++++||++||+....+.....++...+........... .....+..+....++..+
T Consensus 318 ~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 395 (481)
T TIGR00879 318 TDHA-FLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGASFVTGS-SKSSGNVAIVFILLFIAF 395 (481)
T ss_pred chHH-HHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhcccCCc-ccchhHHHHHHHHHHHHH
Confidence 7544 44444445557899999999999999999887665555554444432111111100 000012222223333344
Q ss_pred hhcccccccceeccccCccchhhhhhHHHHHHHHHHHHHHHHHhHHHHHHcCcchhhHHHHHHHHHHHHHHHhhccCCCC
Q 014616 311 FAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELVGTGATFLILAGIAVLAVVFVILFVPETQG 390 (421)
Q Consensus 311 ~~~g~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~et~~ 390 (421)
+..+..+..+++..|.+|++.|+++.++.++..++++++++...+.+.+..++...|+++++++++..+..+++.||+|+
T Consensus 396 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~~~~~~~~ 475 (481)
T TIGR00879 396 FAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTMLESIGVGGVFIFFGGLNVLGLIFVYFFLPETKG 475 (481)
T ss_pred HHccccCeehhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccceehhHHHHHHHHHHHHheecccCCC
Confidence 45556677778889999999999999999999999999999999998888888888999998888888877778899998
Q ss_pred CCHHH
Q 014616 391 LTFLE 395 (421)
Q Consensus 391 ~~~~~ 395 (421)
++++|
T Consensus 476 ~~~~~ 480 (481)
T TIGR00879 476 RTLEE 480 (481)
T ss_pred CChhh
Confidence 87653
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-34 Score=286.24 Aligned_cols=368 Identities=25% Similarity=0.369 Sum_probs=253.5
Q ss_pred chhhhHHHHhhhhhhhcccchhHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHhhhhhhhhhHHHHHhhcCCCCCcc
Q 014616 2 ALVGAIVGAASGGWINDAYGRKKATLLADVVFTAGAIIMAAAPDPYVLILGRLLVGLGVGIASVTAPVYIAEASPSEVRG 81 (421)
Q Consensus 2 ~~ig~~~g~~~~g~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~s~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg 81 (421)
..+|.++|+++.|+++||+|||+++.++.++.+++++++++++|++.+++.|+++|++.+...+....++.|++|+++|+
T Consensus 136 ~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~e~~~~~~r~ 215 (505)
T TIGR00898 136 FFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVFLVFRLLVGMGIGGIWVQAVVLNTEFLPKKQRA 215 (505)
T ss_pred HHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhhccchHHHHHHHhheecChhhhH
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhchHHHHHHHHHHHHHHHhhhcccCCccchHHHHhhHHHHHHHHHHhhcCCcChHHHHhcCCHHHHHHHHHHhcChhh
Q 014616 82 GLVSTNVLMITSGQFLSYLVNLAFTEVPGTWRWMLGVSAVPAIIQFVLMLFMPESPRWLFMKSDKEKAILVLSKIYDIAR 161 (421)
Q Consensus 82 ~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~Wr~~f~~~~~~~l~~~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~ 161 (421)
...+........|.++++.++.... +||+.|++.+++.++..+..+++||+|+|+..+++.+++.+.+.+....+.
T Consensus 216 ~~~~~~~~~~~~g~~~~~~~~~~~~----~wr~~~~~~~i~~~~~~~~~~~~~esp~~l~~~~~~~~a~~~l~~~~~~~~ 291 (505)
T TIGR00898 216 IVGTLIQVFFSLGLVLLPLVAYFIP----DWRWLQLAVSLPTFLFFLLSWFVPESPRWLISQGRIEEALKILQRIAKING 291 (505)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh----HHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHCCCHHHHHHHHHHHHHHcC
Confidence 9988888888888888887765543 399999999988887777778899999999988888887776655433222
Q ss_pred hHHHHHHHHHH-HHHHHhhcccccHHHhhcchhHHHHHHHHHHHHHHHhhcCcceehhchHHHHHHcCCCChHHHHHHHH
Q 014616 162 LEDEIDHLSAA-AEEELRKKKTVRYLDVFKSKEIRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQMAGFQSNQLALLLSL 240 (421)
Q Consensus 162 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 240 (421)
.....+..... .+++.+++++...++++++|.++...+....... ..... .+..+...+..+.+.. ....
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~----~~~~~~~~~~~~~~~~----~~~~ 362 (505)
T TIGR00898 292 KKLPAEVLSLSLEKDLSSSKKQYSFLDLFRTPNLRKTTLCLMMLWF-TTAFS----YYGLVLDLGNLGGNIY----LDLF 362 (505)
T ss_pred CCCCHHHHhhhhhhhhhhccCCCcHHHHhCChHHHHHHHHHHHHHH-HHHHH----HHHHhccccccCCChH----HHHH
Confidence 11110100000 0111111223467788999887665443322111 11111 1112222233344322 2222
Q ss_pred HHHHHHHHHHHHHHHHHhhcCChhHHHHhhHHHHHHHHHHHHHHhhCCCCCCCcchhHHHHHHHHHHHHHhhcccccccc
Q 014616 241 AVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLALYIAFFAPGMGPVPW 320 (421)
Q Consensus 241 ~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 320 (421)
......+++.++.+++.||+|||+.+........++.+.+... . .. . .+...... +...+...+..+..+
T Consensus 363 ~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~--~-~~-~-----~~~~~~~~-~~~~~~~~~~~~~~~ 432 (505)
T TIGR00898 363 ISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFV--P-VD-L-----YFLRTALA-VLGKFGITSAFQMVY 432 (505)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHc--C-CC-c-----hHHHHHHH-HHHHHHHHHHHHHHH
Confidence 3344567889999999999999998776665544444333221 1 10 0 01111111 111112222335566
Q ss_pred eeccccCccchhhhhhHHHHHHHHHHHHHHHHHhHHHHHHcCcchhhHHHHHHHHHHHHHHHhhccCCCCCCHHH
Q 014616 321 TLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELVGTGATFLILAGIAVLAVVFVILFVPETQGLTFLE 395 (421)
Q Consensus 321 ~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~et~~~~~~~ 395 (421)
.+.+|.+|++.|+++.|+.++.++++++++|.+.+ . +..+...++.++++..+++.+.. +++|||++++++|
T Consensus 433 ~~~~e~~p~~~r~~~~g~~~~~~~ig~~i~p~i~~-~-~~~~~~~~~~~~~~~~~~~~~~~-~~lpet~~~~l~~ 504 (505)
T TIGR00898 433 LYTAELYPTVVRNLGVGVCSTMARVGSIISPFLVY-L-GEKWLFLPLVLFGGLALLAGILT-LFLPETKGVPLPE 504 (505)
T ss_pred HHhcccccHHHHhhhHhHHHHHHHHHHHHHhHHHH-H-HHHHHhhHHHHHHHHHHHHHHHH-HcCcCCCCCCCCC
Confidence 78899999999999999999999999999998877 3 33445567888887777775554 4679999988653
|
|
| >KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-37 Score=276.70 Aligned_cols=386 Identities=24% Similarity=0.368 Sum_probs=256.4
Q ss_pred chhhhHHHHhhhhhhhcccchhHHHHHHHHHHHHHHHHHHhcCC-------hhHHHHHHHHHHhhhhhhhhhHHHHHhhc
Q 014616 2 ALVGAIVGAASGGWINDAYGRKKATLLADVVFTAGAIIMAAAPD-------PYVLILGRLLVGLGVGIASVTAPVYIAEA 74 (421)
Q Consensus 2 ~~ig~~~g~~~~g~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~s-------~~~l~~~R~l~G~g~g~~~~~~~~~i~e~ 74 (421)
+.+|.++||+++|+++||+|||+++-..++++.++++++++... ...+.+.|++.|+|.|+.+|.+.++.+|.
T Consensus 93 A~vGti~GQl~FG~lgD~~GRK~vYG~~liImIi~t~~~~~s~~~~~~~~~m~~L~~~R~~LGiGIGGDYPlSAtI~SE~ 172 (538)
T KOG0252|consen 93 ALVGTIFGQLFFGWLGDKFGRKKVYGKELIIMIICSALSGLSVGTTSPLGVMMTLCFFRFLLGIGIGGDYPLSATIMSES 172 (538)
T ss_pred HHHHHHHHHHHHHHHHhhhcchhhhhHHHHHHHHHHHHhccCCCCCCCcchhhHHHHHHHHhhccccCCCcchHHHhhhh
Confidence 57899999999999999999999999999999999998877543 36788999999999999999999999999
Q ss_pred CCCCCccchhchHHHHHHHHHHHHHHHhh----hcccCC----------ccchHHHHhhHHHHHHHHHHhhcCCcChHHH
Q 014616 75 SPSEVRGGLVSTNVLMITSGQFLSYLVNL----AFTEVP----------GTWRWMLGVSAVPAIIQFVLMLFMPESPRWL 140 (421)
Q Consensus 75 ~p~~~rg~~~~~~~~~~~~g~~l~~~~~~----~~~~~~----------~~Wr~~f~~~~~~~l~~~~~~~~~~esp~~~ 140 (421)
..+++||..++........|.+.|.+++. .+-... +-||..|.+.++|+++.+..++.+|||+++.
T Consensus 173 an~~~RGa~iaavFa~Qg~GilaG~ivt~Iv~~~fe~~~~~~~~~~~ld~vWRl~~glg~vpa~~~ly~Rl~M~Et~~Y~ 252 (538)
T KOG0252|consen 173 ANKKTRGAFIAAVFAMQGFGILAGGIVALIVSAIFEKIFNGPSTYPHLDGVWRIIFGLGAVPALLVLYFRLKMPETARYT 252 (538)
T ss_pred hhhccccceeEEEEEecchhHhhccHHHHHHHHHHhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhHH
Confidence 99999997776554444444444443333 221111 1399999999999999999999999999987
Q ss_pred HhcCCHHH-HHHHHHHhcChhhhHHHHHHHHHHHHHHHhhccccc----HHHhhcchhHHHHHHHHHHHHHHHhhcCcce
Q 014616 141 FMKSDKEK-AILVLSKIYDIARLEDEIDHLSAAAEEELRKKKTVR----YLDVFKSKEIRLAFLAGAGLQAFQQFTGINT 215 (421)
Q Consensus 141 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (421)
....++.+ +.....+.... ++.+++..+...+.+.+ +...+..+.. ..++ +.+..++..=..++.
T Consensus 253 al~~~~~~~a~~d~~k~~~~--------~~~~~~~~~~~~~~~~~~~~~F~~~f~~~hg-~~Ll-gt~~~WFllDiafy~ 322 (538)
T KOG0252|consen 253 ALVSKKLKQAAGDMKKVLSV--------DIEAESTAESDVPPPSNSFGLFSRLFLRWHG-KHLL-GTAGTWFLLDIAFYG 322 (538)
T ss_pred HHhhcCHhhhhhcccccccc--------ccchhhccccCCCCcccccchHHHHHHHHHH-HHHH-HHHHHHHhhhhhhhc
Confidence 43332211 11100000000 00000000111111111 2222222211 1222 222222222223444
Q ss_pred ehhchHHHHHHcCCCChHHH--------HHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHhhHHHHHHHHHHHHHHhhC
Q 014616 216 VMYYSPTIVQMAGFQSNQLA--------LLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISG 287 (421)
Q Consensus 216 ~~~~~~~~~~~~g~~~~~~~--------~~~~~~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~l~~~~~~~ 287 (421)
...+...+++..+..+.... ....+......++|..++..++|++|||+..+.++.++.+..+.+......
T Consensus 323 ~nL~~s~I~~~ig~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~iGRk~iq~~GF~~~~i~~~~~~~~y~~- 401 (538)
T KOG0252|consen 323 QNLFQSVIFSAIGVIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDIIGRKYIQLMGFFIMTIFFFVIAGPYNQ- 401 (538)
T ss_pred cccHHHHHHHhhccCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeehhhhHHHHHhhHHHHHHHHHHHcCCccc-
Confidence 44556666666555543222 122222233344566677789999999999998887776666555432211
Q ss_pred CCCCCCcchhHHHHHHHHHHHHHhhcccccccceeccccCccchhhhhhHHHHHHHHHHHHHHHHHhHHHHH-----HcC
Q 014616 288 SSASSSGVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAE-----LVG 362 (421)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~-----~~g 362 (421)
..+ ... ..+...+..++...|+........+|.||++.|+++.|++...+-.|++++...+.++.+ ..+
T Consensus 402 -~~~---~~G--f~v~y~l~~ff~NFGPn~ttfivpaE~FParvR~t~hGIsAA~GK~GAivg~~~F~~~t~~~yp~~~g 475 (538)
T KOG0252|consen 402 -LEN---TIG--FVVLYSLTFFFGNFGPNATTFIVPAEIFPARVRSTCHGISAASGKAGAIVGAFGFLYLTDHNYPPNIG 475 (538)
T ss_pred -ccc---cCc--eeehHHHHHHHHhcCCCceeEEeehhhchHHHhhhhhhHHHHhccchHHHHHHHhhHhhhccCCcccc
Confidence 111 111 222334444566778888889999999999999999999999999999999999999988 677
Q ss_pred cchhhHHHHHHHHHHHHHHHhhccCCCCCCHHHHHHHHhcccc
Q 014616 363 TGATFLILAGIAVLAVVFVILFVPETQGLTFLEVEQMWKERAW 405 (421)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~et~~~~~~~~~~~~~~~~~ 405 (421)
..+.++++++.+++..++. +++||||+|++||++++....++
T Consensus 476 ~~~v~~i~~~~~~~gi~~T-~l~pEtk~~~leei~~e~~~~~~ 517 (538)
T KOG0252|consen 476 VRNVFIILAGCMLLGILFT-LLIPETKGKSLEEISNEEESNGG 517 (538)
T ss_pred chHHHHHHHHHHHHhHhee-EEeecccccCHHHhcChhhcccC
Confidence 8899999999888876544 55689999999999766554444
|
|
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-32 Score=260.83 Aligned_cols=339 Identities=21% Similarity=0.232 Sum_probs=212.3
Q ss_pred hhhhHHHHhhhhhhhcccchhHHHHHHHHHHHHHHHHHHhcCChh--------HHHHHHHHHHhhhhhhhhhHHHHHhhc
Q 014616 3 LVGAIVGAASGGWINDAYGRKKATLLADVVFTAGAIIMAAAPDPY--------VLILGRLLVGLGVGIASVTAPVYIAEA 74 (421)
Q Consensus 3 ~ig~~~g~~~~g~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~s~~--------~l~~~R~l~G~g~g~~~~~~~~~i~e~ 74 (421)
.++..+|++++|+++||+|||+++.++.+++++++.++++++|+. .+++.|+++|++.|+..+...++++|+
T Consensus 73 ~~~~~ig~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~ 152 (432)
T PRK10406 73 FLMRPIGGWLFGRIADKHGRKKSMLISVCMMCFGSLVIACLPGYETIGTWAPALLLLARLFQGLSVGGEYGTSATYMSEV 152 (432)
T ss_pred HHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHh
Confidence 356679999999999999999999999999999999999999875 588999999999999999999999999
Q ss_pred CCCCCccchhchHHHHHHHHHHHHHHHhhhccc-------CCccchHHHHhhHHHHHHHHHHhhcCCcChHHHHhcCCHH
Q 014616 75 SPSEVRGGLVSTNVLMITSGQFLSYLVNLAFTE-------VPGTWRWMLGVSAVPAIIQFVLMLFMPESPRWLFMKSDKE 147 (421)
Q Consensus 75 ~p~~~rg~~~~~~~~~~~~g~~l~~~~~~~~~~-------~~~~Wr~~f~~~~~~~l~~~~~~~~~~esp~~~~~~~~~~ 147 (421)
+|+++||++.+........|.+++..+...+.. ...+||+.|++.++++++.+.....+||+|++...
T Consensus 153 ~p~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~F~i~~~~~ll~~~~~~~~~e~~~~~~~----- 227 (432)
T PRK10406 153 AVEGRKGFYASFQYVTLIGGQLLALLVVVVLQQTLEDAELREWGWRIPFALGAVLAVVALWLRRQLDETSQQETR----- 227 (432)
T ss_pred CCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHHHHHHHhcCCCCchHHHh-----
Confidence 999999998887777777777777655433221 12369999999888887766666667887653100
Q ss_pred HHHHHHHHhcChhhhHHHHHHHHHHHHHHHhhcccccHHHhhcchhHHHHHHHHHHHHHHHhhcCcceehhchHHHHH-H
Q 014616 148 KAILVLSKIYDIARLEDEIDHLSAAAEEELRKKKTVRYLDVFKSKEIRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQ-M 226 (421)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 226 (421)
+ . ++..++++++++++.+......... ....++....+.|.+++ .
T Consensus 228 ---------------------------~-~--~~~~~~~~l~~~~~~~~~~~~~~~~----~~~~~~~~~~~lp~~l~~~ 273 (432)
T PRK10406 228 ---------------------------A-L--KEAGSLKGLWRNRRAFIMVLGFTAA----GSLCFYTFTTYMQKYLVNT 273 (432)
T ss_pred ---------------------------h-h--cccccHHHHHhhHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHh
Confidence 0 0 0112345667766554332221111 11112223345566654 5
Q ss_pred cCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHhhHHHHHHHHHHHHHHhhCCCCCCCcchhHHHHHHHHH
Q 014616 227 AGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLAL 306 (421)
Q Consensus 227 ~g~~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (421)
.|.+..+.+........+ ..++..+.|+++||++||+..........+....+... .. .. . .. +........
T Consensus 274 ~g~s~~~~~~~~~i~~~~-~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~-~~-~~-~--~~--~~~~~~~~~ 345 (432)
T PRK10406 274 AGMHANVASGIMTAALFV-FMLIQPLIGALSDKIGRRTSMLCFGSLAALFTVPILSA-LQ-NV-S--SP--YAAFGLVMC 345 (432)
T ss_pred cCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHH-HH-cC-C--cH--HHHHHHHHH
Confidence 688766666555554444 46777788999999999987654433222222111111 11 10 0 00 111111111
Q ss_pred HHHHhhcccccccceeccccCccchhhhhhHHHHHHHHHH-HHHHHHHhHHHHHHcCcc-hhhHHHHHHHHHHHHHHHhh
Q 014616 307 YIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWIS-NLIVAQTFLTVAELVGTG-ATFLILAGIAVLAVVFVILF 384 (421)
Q Consensus 307 ~~~~~~~g~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~ 384 (421)
..... ....+..+.+.+|.+|++.|+++.|+.+..+++. +...+.+...+ +..|.. ..+++.++.+++..+..++
T Consensus 346 ~~~~~-~~~~~~~~~~~~e~fp~~~r~t~~g~~~~~g~~~~g~~~p~~~~~l-~~~g~~~~~~~~~~~~~~i~~~~~~~- 422 (432)
T PRK10406 346 ALLIV-SFYTSISGILKAEMFPAQVRALGVGLSYAVANALFGGSAEYVALSL-KSIGMETAFFWYVTLMAVVAFLVSLM- 422 (432)
T ss_pred HHHHH-HHHHHHHHHHHHHHCCCCccchhhhHHHHHHHHHHHhHHHHHHHHH-HHhCCCcHHHHHHHHHHHHHHHHHHH-
Confidence 10111 0112334567799999999999999998876652 33455555533 445533 3444444444444443333
Q ss_pred ccCCCCCC
Q 014616 385 VPETQGLT 392 (421)
Q Consensus 385 ~~et~~~~ 392 (421)
.++++|+
T Consensus 423 -l~~~~~~ 429 (432)
T PRK10406 423 -LHRKGKG 429 (432)
T ss_pred -hhhcccc
Confidence 4555655
|
|
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-31 Score=257.72 Aligned_cols=344 Identities=17% Similarity=0.182 Sum_probs=218.5
Q ss_pred hhhhHHHHhhhhhhhcccchhHHHHHHHHHHHHHHHHHHhcCChh--------HHHHHHHHHHhhhhhhhhhHHHHHhhc
Q 014616 3 LVGAIVGAASGGWINDAYGRKKATLLADVVFTAGAIIMAAAPDPY--------VLILGRLLVGLGVGIASVTAPVYIAEA 74 (421)
Q Consensus 3 ~ig~~~g~~~~g~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~s~~--------~l~~~R~l~G~g~g~~~~~~~~~i~e~ 74 (421)
.++..+|+++.|+++||+|||+++.++.++++++++++++++|+. .++++|+++|++.|+..+....++.|+
T Consensus 74 ~~~~~~g~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~ 153 (438)
T PRK09952 74 FLFRPLGGVVFGHFGDRLGRKRMLMLTVWMMGIATALIGLLPSFSTIGWWAPVLLVTLRAIQGFAVGGEWGGAALLAVES 153 (438)
T ss_pred HHHHhhHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHh
Confidence 456779999999999999999999999999999999999999987 588999999999999999999999999
Q ss_pred CCCCCccchhchHHHHHHHHHHHHHHHhhhccc-------CCccchHHHHhhHHHHHHHHHHhhcCCcChHHHHhcCCHH
Q 014616 75 SPSEVRGGLVSTNVLMITSGQFLSYLVNLAFTE-------VPGTWRWMLGVSAVPAIIQFVLMLFMPESPRWLFMKSDKE 147 (421)
Q Consensus 75 ~p~~~rg~~~~~~~~~~~~g~~l~~~~~~~~~~-------~~~~Wr~~f~~~~~~~l~~~~~~~~~~esp~~~~~~~~~~ 147 (421)
+|+|+|++..+....+...|.+++..+...+.. ...+||+.|++.+++.++........||+|+|...+++.+
T Consensus 154 ~p~~~rg~~~~~~~~g~~~G~~l~~~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~l~~~~l~~~~~es~~~~~~~~~~~ 233 (438)
T PRK09952 154 APKNKKAFYSSGVQVGYGVGLLLSTGLVSLISMMTTDEQFLSWGWRIPFLFSIVLVLIALWVRNGMEESAEFEQQQHEQA 233 (438)
T ss_pred CCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhccChHHHHHHHHHHHHHHHHHHHhCCCChhHHHHHhhcc
Confidence 999999999888888888888777654433221 1236999999988877665555567899987642211100
Q ss_pred HHHHHHHHhcChhhhHHHHHHHHHHHHHHHhhcccccH-HHhhcchhHHHHHHHHHHHHHHHhhcCcceehhchHHHH-H
Q 014616 148 KAILVLSKIYDIARLEDEIDHLSAAAEEELRKKKTVRY-LDVFKSKEIRLAFLAGAGLQAFQQFTGINTVMYYSPTIV-Q 225 (421)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 225 (421)
+.+++.+. ..++++++.+....... +......+....+.|.+. +
T Consensus 234 ------------------------------~~~~~~~~~~~l~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~y~~~ 279 (438)
T PRK09952 234 ------------------------------AAKKRIPVIEALLRHPGAFLKIIALR----LCELLTMYIVTAFALNYSTQ 279 (438)
T ss_pred ------------------------------cccccCCHHHHHHHchHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
Confidence 00001111 12344554433222111 111112222233455555 4
Q ss_pred HcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHhhHHHHHHHHHHHHHHhhCCCCCCCcchhHHHHHHHH
Q 014616 226 MAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLA 305 (421)
Q Consensus 226 ~~g~~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (421)
..|.+........ .......+++.++.|+++||++||+....+.....++...+.... . .. + ..+.......
T Consensus 280 ~~g~s~~~~~~~~-~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~-~-~~-~----~~~~~~~~~~ 351 (438)
T PRK09952 280 NLGLPRELFLNIG-LLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFMAL-E-AQ-S----IFWIVFFSIM 351 (438)
T ss_pred hcCCCHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHH-H-cC-C----hHHHHHHHHH
Confidence 5677655432222 223344577888999999999999987655443333222221111 0 10 0 0111111111
Q ss_pred HHHHHhhcccccccceeccccCccchhhhhhHHHHHHHH-HHHHHHHHHhHHHHHHcC--cchhhHHHHHHHHHHHHHHH
Q 014616 306 LYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNW-ISNLIVAQTFLTVAELVG--TGATFLILAGIAVLAVVFVI 382 (421)
Q Consensus 306 ~~~~~~~~g~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~g--~~~~~~~~~~~~~~~~~~~~ 382 (421)
+. .+......+..+++.+|.+|++.|+++.++.+..+. +++.++|.+.+.+.+..+ +...+.+.++.+++..+..
T Consensus 352 l~-~~~~~~~~~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~v~~- 429 (438)
T PRK09952 352 LA-NIAHDMVVCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISAMTA- 429 (438)
T ss_pred HH-HHHHHHHHHHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHH-
Confidence 11 111112234456788999999999999888776654 788888988888877553 4455665655555554444
Q ss_pred hhccCCCC
Q 014616 383 LFVPETQG 390 (421)
Q Consensus 383 ~~~~et~~ 390 (421)
+..+||++
T Consensus 430 ~~~~~~~~ 437 (438)
T PRK09952 430 LLMKDNQR 437 (438)
T ss_pred HHcccccc
Confidence 44577653
|
|
| >KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-31 Score=260.24 Aligned_cols=373 Identities=21% Similarity=0.296 Sum_probs=253.1
Q ss_pred chhhhHHHHhhhhhhhcccchhHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHhhhhhhhhhHHHHHhhcCCCCCcc
Q 014616 2 ALVGAIVGAASGGWINDAYGRKKATLLADVVFTAGAIIMAAAPDPYVLILGRLLVGLGVGIASVTAPVYIAEASPSEVRG 81 (421)
Q Consensus 2 ~~ig~~~g~~~~g~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~s~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg 81 (421)
+++|.++|++++|.++||+|||+++.++.++..++.+.+++++|++.+++.|+++|++.++.......++.|+.++++|+
T Consensus 127 ~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a~~~~~~~~~Rfl~G~~~~~~~~~~~~~~~E~~~~~~R~ 206 (521)
T KOG0255|consen 127 FFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFAPNYWMFLIFRFLSGFFGSGPLTVGFGLVAEIVSPKQRG 206 (521)
T ss_pred HHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhccchhHHhHhhheeecCcchhh
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhchHHHHHHHHHHHHHHHhhhcccCCccchHHHHhhHHHHHHHHHHhhcCCcChHHHHhcCCHHHHHHHHHHhcChh-
Q 014616 82 GLVSTNVLMITSGQFLSYLVNLAFTEVPGTWRWMLGVSAVPAIIQFVLMLFMPESPRWLFMKSDKEKAILVLSKIYDIA- 160 (421)
Q Consensus 82 ~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~Wr~~f~~~~~~~l~~~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~- 160 (421)
..... ......++.++++....+.. +|||.+++..+++++.++.+++.||||+|+..+++.+++.+.+++..+.+
T Consensus 207 ~~~~~-~~~~~~~~~~~~~~~a~~~~---~Wr~~~~~~~~~~~~~~~~~~l~~Es~rwl~~~g~~~~a~~~l~~~a~~n~ 282 (521)
T KOG0255|consen 207 LALTL-GGFFFVGGLMLPAGAAYITR---DWRWLFWIISIPSGLFLLLWFLPPESPRWLLSKGRIDEAIKILKKIAKLNG 282 (521)
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHh---hHHHHHHHHHHHHHHHHHHHHccCcChHHHHHcCchHHHHHHHHHHHhhcC
Confidence 99888 44555555555555544444 69999999999998887777777899999999999999888887765443
Q ss_pred --hhHHH-HHHHHHHHH-HHHhhcccccHHHhhcchhHHHHHHHHHHHHHHHhhcCcceehhc-hHHHHHHcCCCChHHH
Q 014616 161 --RLEDE-IDHLSAAAE-EELRKKKTVRYLDVFKSKEIRLAFLAGAGLQAFQQFTGINTVMYY-SPTIVQMAGFQSNQLA 235 (421)
Q Consensus 161 --~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~ 235 (421)
....+ .+.....+. .....+++....++++.++.++..+......+ . + ...++ .+......|.+..
T Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~-~----~-~~~y~gl~~~~~~lg~~~~--- 353 (521)
T KOG0255|consen 283 RKLSVKELLRLELLLRPLKLLFTEPKISFLDLFRTPRLRYRTLYLLFIWF-V----F-SLVYYGLSLNVSGLGGNIY--- 353 (521)
T ss_pred CCCCcHHHHHHHHHhhHhhhhccCCCCchhhhhcCHHHHHHHHHHHHHHH-H----H-hHHHHhhhhhhhhcCchHH---
Confidence 11111 111101111 11112233557888888866554433222111 0 1 11111 1112223333322
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHhhHHHHHHHHHHHHHHhhCCCCCCCcchhHHHHHHHHHHHHHhhccc
Q 014616 236 LLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLALYIAFFAPGM 315 (421)
Q Consensus 236 ~~~~~~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 315 (421)
... .........+....+...|+.|||.....+.....++.+...+.... .. ....++.. .+...+...+.
T Consensus 354 ~~~-~~~~~~~~p~~~~~~~~~~~~gR~~~~~~~~~~~~~~~~~~~~~~~~--~~---~~~~~~~~---~~~~~~~~~~~ 424 (521)
T KOG0255|consen 354 LNF-TLSGLVELPAYFRNGLLLPEFGRRPPLFLSLFLAGIGLLLFGWLPDD--LG---GWLHWILP---LLGKFFIGSAF 424 (521)
T ss_pred HHH-HHHHHHHhhHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHhhcc--ch---hHHHHHHH---HHHHHHHHHHH
Confidence 112 22222467777778899999999998877776666666555443211 10 00111111 11111111122
Q ss_pred ccccceeccccCccchhhhhhHHHHHHHHHHHHHHHHHhHHHHHHcCcchhhHHHHHHHHHHHHHHHhhccCCCCCCHHH
Q 014616 316 GPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELVGTGATFLILAGIAVLAVVFVILFVPETQGLTFLE 395 (421)
Q Consensus 316 ~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~et~~~~~~~ 395 (421)
.+.+.+.+|++|+..|..+.+..++..+++++.++........ ......+.+++....+.+.+..+++|||+++++.+
T Consensus 425 -~~~~~~~~el~pt~~r~~~~~~~~~~~~~~~i~ap~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~lpet~~~~l~~ 502 (521)
T KOG0255|consen 425 -NLIFLYSAELIPTVVRNTAVGAISAAARLGSILAPLFPLLLRQ-MFPLLGLILFGWLALLLGLLSLLLLPETKGKPLPG 502 (521)
T ss_pred -HHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hcccchHHHHHHHHHHHHHHHHhcCcccCCCCCch
Confidence 3336788999999999999999999999999888877765544 22223333356677777777778899999999876
Q ss_pred HHH
Q 014616 396 VEQ 398 (421)
Q Consensus 396 ~~~ 398 (421)
..+
T Consensus 503 t~~ 505 (521)
T KOG0255|consen 503 TLL 505 (521)
T ss_pred hHH
Confidence 543
|
|
| >KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-31 Score=236.30 Aligned_cols=372 Identities=23% Similarity=0.261 Sum_probs=255.9
Q ss_pred hhhhHHHHhhhhhhhcccchhHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHhhhhhhhhhHHHHHhhcCCCCCccc
Q 014616 3 LVGAIVGAASGGWINDAYGRKKATLLADVVFTAGAIIMAAAPDPYVLILGRLLVGLGVGIASVTAPVYIAEASPSEVRGG 82 (421)
Q Consensus 3 ~ig~~~g~~~~g~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~s~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg~ 82 (421)
..|+++|+..+|.++|++||||.+.+..+...+...+.++++|+..+.+.|.+.|+|.|+ .|...++-.|..|..+|+.
T Consensus 123 ~~gmllga~~w~l~~d~~grr~~f~~T~l~t~v~~~is~~spnf~~L~~f~~l~~~g~gg-~pv~~~~yle~lp~~~r~~ 201 (528)
T KOG0253|consen 123 FLGMLVGAMVWGLSADTIGRRKGFNLTFLVTGVFGVISGASPNFASLCVFRALWGFGVGG-LPVDSAIYLEFLPSSHRWL 201 (528)
T ss_pred HhhhhhhhhhhheehhhhhcchhhhhhHHHHHHHHHhhcCCCCeehhhHHHHHHhccCCC-ccHhHHHHHHhccCcCCCc
Confidence 468999999999999999999999999999999999999999999999999999999999 8899999999999999987
Q ss_pred hhchHHHHHHHHHHHHHHHhhhcccCCccchHHHHhhHHHHHHHHHHhhcCCcChHHHHhcCCHHHHHHHHHHhcChhhh
Q 014616 83 LVSTNVLMITSGQFLSYLVNLAFTEVPGTWRWMLGVSAVPAIIQFVLMLFMPESPRWLFMKSDKEKAILVLSKIYDIARL 162 (421)
Q Consensus 83 ~~~~~~~~~~~g~~l~~~~~~~~~~~~~~Wr~~f~~~~~~~l~~~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (421)
.+-.. ..+.+|.+....+........ +|||.......|..+.....+++|||||+...+++++++...+.++...|..
T Consensus 202 ~~V~~-~~waig~v~ea~law~vm~~~-gwr~~l~~~~~pl~~~a~f~~w~~ESpRf~~~~G~~~kAletL~kiArmNg~ 279 (528)
T KOG0253|consen 202 LTVMS-FFWAIGQVFEALLAWGVMSNF-GWRYLLFTSSTPLMFAARFLVWVYESPRFYLAKGDDYKALETLHKIARMNGK 279 (528)
T ss_pred chhHH-HHHHHHHHHHHHHHHHHHHhh-hHHHHHHHHHhHHHHHHHHHhhcccCcchhhhcCChHHHHHHHHHHHHhcCC
Confidence 66555 788889998888887776666 4999988888877777778888999999999999999999998888766543
Q ss_pred HHHHH------------HHHHHHHHHHh-hccc-ccHHHhhcchhHHHHHHHHHHHHHHHhhcCcceeh-----------
Q 014616 163 EDEID------------HLSAAAEEELR-KKKT-VRYLDVFKSKEIRLAFLAGAGLQAFQQFTGINTVM----------- 217 (421)
Q Consensus 163 ~~~~~------------~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------- 217 (421)
..+.. +..+..+...+ .++. ....+++. |++++..+....+ ++.+-+.++...
T Consensus 280 qlplgvl~~s~~~~~e~e~~~~~~~~~~a~ke~rg~~~nLls-p~lrkttlllw~i-wfgnafsyyg~VLlttelfqsgd 357 (528)
T KOG0253|consen 280 QLPLGVLESSAIDRQEQEESDLDDSKSSAAKEVRGGTTNLLS-PKLRKTTLLLWRI-WFGNAFSYYGSVLLTTELFQSGD 357 (528)
T ss_pred CCCcceeeeehhhhhhhhhhchhhhhhccccccccchHhhcC-hHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHHHhccC
Confidence 22110 00000001111 1111 12333333 2222211111111 011111111111
Q ss_pred ------hchHHHHHH-cC-CCChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHhhHHHHHHHHHHHHHHhhCCC
Q 014616 218 ------YYSPTIVQM-AG-FQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSS 289 (421)
Q Consensus 218 ------~~~~~~~~~-~g-~~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~l~~~~~~~~~ 289 (421)
...|+..+. .+ -..........+......+.|.++.++++||+|||+.+...++...+...++.. +...
T Consensus 358 ~c~~~~r~~p~e~e~~~~c~~s~~~dYrdllitslaefPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~---c~~r 434 (528)
T KOG0253|consen 358 ACPLYNRFLPTELETRANCPLSVAKDYRDLLITSLAEFPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTT---CKTR 434 (528)
T ss_pred ccccchhcchhHHHhhhcCCccchhHHHHHHHHHHhhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHH---hcCc
Confidence 122333332 11 111222334445555668999999999999999999987666554444433322 1111
Q ss_pred CCCCcchhHHHHHHHHHHHHHhhcccccccceeccccCccchhhhhhHHHHHHHHHHHHHHHHHhHHHHHHcCcchhhHH
Q 014616 290 ASSSGVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELVGTGATFLI 369 (421)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 369 (421)
. .+ ....+..-++..+...+.|.+..|.+|++.|+++.|.+...+++|+++.|++. +..-.....+..+
T Consensus 435 n----~~-----tvllf~arafisg~fqvaYvYtPEVyPTavRatgvGtcSsmaRIggI~~p~iA--~~~e~s~sl~i~v 503 (528)
T KOG0253|consen 435 N----AY-----TVLLFTARAFISGAFQVAYVYTPEVYPTAVRATGVGTCSSMARIGGIFSPVIA--MRAELSTSLPIFV 503 (528)
T ss_pred c----hh-----HHHHHHHHHHHhchheEEEEecCcccchhhhhcchhhhhhHHhhhhhhhhHHH--HHhccceeehHHH
Confidence 1 11 11122222344455678899999999999999999999999999999988777 2222334567788
Q ss_pred HHHHHHHHHHHHHhhccCCCCCCH
Q 014616 370 LAGIAVLAVVFVILFVPETQGLTF 393 (421)
Q Consensus 370 ~~~~~~~~~~~~~~~~~et~~~~~ 393 (421)
+++.++++++..+++.-|||||.+
T Consensus 504 y~~~~ilagIavcffPiEtkGR~l 527 (528)
T KOG0253|consen 504 YGALFILAGIAVCFFPIETKGRSL 527 (528)
T ss_pred HHHHHHHHHHHheeeeeccCCCCC
Confidence 888888888888888899999975
|
|
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.1e-29 Score=242.75 Aligned_cols=346 Identities=17% Similarity=0.206 Sum_probs=207.9
Q ss_pred HHHHhhhhhhhcccchhHHHHHHHHHHHHHHHHHHhcCChh--------HHHHHHHHHHhhhhhhhhhHHHHHhhcCCCC
Q 014616 7 IVGAASGGWINDAYGRKKATLLADVVFTAGAIIMAAAPDPY--------VLILGRLLVGLGVGIASVTAPVYIAEASPSE 78 (421)
Q Consensus 7 ~~g~~~~g~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~s~~--------~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~ 78 (421)
.+|+++.|+++||+|||+++..+.+++.+++.++++++|++ .+++.|+++|++.|...+....+++|++|++
T Consensus 70 ~ig~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~ 149 (434)
T PRK15075 70 PLGAIVLGAYIDRVGRRKGLIVTLSIMASGTLLIAFVPGYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPG 149 (434)
T ss_pred hhHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCcc
Confidence 57889999999999999999999999999999999999987 4689999999999999999999999999999
Q ss_pred CccchhchHHHHHHHHHHHHHHHhhhccc-------CCccchHHHHhhHHHHHHHHHHhhcCCcChHHHHhcCCHHHHHH
Q 014616 79 VRGGLVSTNVLMITSGQFLSYLVNLAFTE-------VPGTWRWMLGVSAVPAIIQFVLMLFMPESPRWLFMKSDKEKAIL 151 (421)
Q Consensus 79 ~rg~~~~~~~~~~~~g~~l~~~~~~~~~~-------~~~~Wr~~f~~~~~~~l~~~~~~~~~~esp~~~~~~~~~~~~~~ 151 (421)
+|++.++........|..+++.++..+.. ...+||+.|++.++..++.+......||++.+...+
T Consensus 150 ~rg~~~~~~~~~~~~g~~~g~~~g~~l~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~-------- 221 (434)
T PRK15075 150 RKGFYTSWQSASQQVAVVFAALLGYLLNQWLSPAQMAEWGWRIPFLIGCLIVPFIFLIRRSLEETEEFLARK-------- 221 (434)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHHHHHHHHhcCCCHHHHHhh--------
Confidence 99999988777766666665555544311 123699999986544333333233344543221000
Q ss_pred HHHHhcChhhhHHHHHHHHHHHHHHHhhcccccHHHhhcchhHHHHHHHHHHHHHHHhhcCcceehhchHHHHHH-cCCC
Q 014616 152 VLSKIYDIARLEDEIDHLSAAAEEELRKKKTVRYLDVFKSKEIRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQM-AGFQ 230 (421)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~ 230 (421)
.+.+....+++..++++.+..... ..+......+....+.|.++++ .|++
T Consensus 222 -------------------------~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~p~~l~~~~g~~ 272 (434)
T PRK15075 222 -------------------------HRPSMREIFRSLAANWRIVLAGML----MVAMTTVSFYLITVYTPTFGKTVLHLS 272 (434)
T ss_pred -------------------------hccccccHHHHHHHhHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 000000111122233322211111 1111222233445567777765 6887
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHhhHHHHHHHHHHHHHHhhCCCCCCCcchhHHHHHHHHHHHHH
Q 014616 231 SNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLALYIAF 310 (421)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (421)
..+.+.. ........+++.+++|+++||++||+....+.....+.... ........ . . ..............
T Consensus 273 ~~~~~~~-~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~-~~~~~~~~-~---~-~~~~~~~~~~~~~~- 344 (434)
T PRK15075 273 AADSLLV-TLCVGVSNFIWLPIGGALSDRIGRRPVLIAFTVLAILTAYP-ALSWLVAA-P---S-FARMLAVELWLSFL- 344 (434)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH-HHHHHHcC-C---c-hHHHHHHHHHHHHH-
Confidence 6665443 34444557889999999999999998876543322211111 11111111 1 1 11111111111111
Q ss_pred hhcccccccceeccccCccchhhhhhHHHHHHHH-HHHHHHHHHhHHHHHHcCcchhhHHHHHHHHHHHHHHHhhccCCC
Q 014616 311 FAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNW-ISNLIVAQTFLTVAELVGTGATFLILAGIAVLAVVFVILFVPETQ 389 (421)
Q Consensus 311 ~~~g~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~et~ 389 (421)
.....+..+.+..|.+|++.|+++.++.+..+. +++.++|...+.+.+..|+.....++...+.++..+..+..++.+
T Consensus 345 -~g~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 423 (434)
T PRK15075 345 -YGSYNGAMVVALTEVMPAEVRTAGFSLAYSLATAIFGGFTPAISTWLIHVTGDKAAPGYWLSFAAVCGLIATLVLYRRR 423 (434)
T ss_pred -HHHHHhhHHHHHHHHCCCCccchheeHHHHHHHHHHhhhHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHhcccc
Confidence 111223344667899999999999998765554 457778888898889888542211111122233333445567777
Q ss_pred CCCHHHHHH
Q 014616 390 GLTFLEVEQ 398 (421)
Q Consensus 390 ~~~~~~~~~ 398 (421)
+.++|..|+
T Consensus 424 ~~~~~~~~~ 432 (434)
T PRK15075 424 GARLQAAEA 432 (434)
T ss_pred chhhhhhhc
Confidence 777765553
|
|
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.2e-29 Score=243.51 Aligned_cols=326 Identities=20% Similarity=0.250 Sum_probs=219.2
Q ss_pred chhhhHHHHhhhhhhhcccchhHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHhhhhhhhhhHHHHHhhcCCCCCcc
Q 014616 2 ALVGAIVGAASGGWINDAYGRKKATLLADVVFTAGAIIMAAAPDPYVLILGRLLVGLGVGIASVTAPVYIAEASPSEVRG 81 (421)
Q Consensus 2 ~~ig~~~g~~~~g~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~s~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg 81 (421)
..+|+.+++++.|+++||+|||+++.++.+++++++.+++++++++.+++.|+++|++.|...+....++.|++|+|+|+
T Consensus 62 ~~~~~~l~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~ 141 (426)
T PRK12307 62 AFIGRPFGGALFGLLADKFGRKPLMMWSIVAYSVGTGLSGLASGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKS 141 (426)
T ss_pred HHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhh
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhchHHHHHHHHHHHHHHHhhhcccCCccchHHHHhhHHHHHHHHHHhhcCCcChHHHHhcCCHHHHHHHHHHhcChhh
Q 014616 82 GLVSTNVLMITSGQFLSYLVNLAFTEVPGTWRWMLGVSAVPAIIQFVLMLFMPESPRWLFMKSDKEKAILVLSKIYDIAR 161 (421)
Q Consensus 82 ~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~Wr~~f~~~~~~~l~~~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~ 161 (421)
++.+....+...|.++++.+...+.... +||+.|++..++.++.+......||++++...+.+.+.
T Consensus 142 ~~~~~~~~~~~lg~~~~~~l~~~l~~~~-~w~~~f~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~------------- 207 (426)
T PRK12307 142 KASAFLVSGFGIGNIIAAYFMPSFAEAY-GWRAAFFVGLLPVLLVIYIRARAPESKEWEEAKLSGKG------------- 207 (426)
T ss_pred HhhhHHHHHHhHHHHHHHHHHHHHcccC-CHHHHHHHHHHHHHHHHHHHHHCCCChHHHHhhhhccc-------------
Confidence 9999988888899988877766555444 59999998665544444434445777654321100000
Q ss_pred hHHHHHHHHHHHHHHHhhcccccHHHhhcchhHHHHHHHHHHHHHHHhhcCcceehhchHHHHHHcCCCChHHHHHHHHH
Q 014616 162 LEDEIDHLSAAAEEELRKKKTVRYLDVFKSKEIRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQMAGFQSNQLALLLSLA 241 (421)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 241 (421)
+ +++...+.....+++.++++.++........ .+..+...+....+.|.+.++.|.+....+.....
T Consensus 208 --~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~- 274 (426)
T PRK12307 208 --K--------HSQSAWSVFSLSMKGLFNRAQFPLTLCVFIV--LFSIFGANWPIFGLLPTYLAGEGFDTGVVSNLMTA- 274 (426)
T ss_pred --c--------ccccchhhhhHHHHHHHhhchHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHH-
Confidence 0 0000000011234566777766543322111 11111111222345677777778876666555444
Q ss_pred HHHHHHHHHHHHHHHHhhcCChhHHHHhhHHHHHHHHHHHHHHhhCCCCCCCcchhHHHHHHHHHHHHHhhcccccccce
Q 014616 242 VAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLALYIAFFAPGMGPVPWT 321 (421)
Q Consensus 242 ~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 321 (421)
.....+++.++.+++.||++||+....+.....+....+.. . ... .. .......+...+...+..+..+.
T Consensus 275 ~~~~~~~g~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~--~-~~~-----~~--~~~~~~~~~~~~~~~~~~~~~~~ 344 (426)
T PRK12307 275 AAFGTVLGNIVWGLCADRIGLKKTFSIGLLMSFLFIFPLFR--I-PQD-----NY--LLLGACLFGLMATNVGVGGLVPK 344 (426)
T ss_pred HHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHH--H-ccc-----cH--HHHHHHHHHHHHhcccHhHHHHH
Confidence 34457899999999999999998876555443333222211 1 110 01 11111111111222233344456
Q ss_pred eccccCccchhhhhhHHHHHHHHHHHHHHHHHhHHHHHHcCcc
Q 014616 322 LNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELVGTG 364 (421)
Q Consensus 322 ~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~ 364 (421)
+..|.+|++.|+++.|+.+....+++.+++.+.+.+.+..|..
T Consensus 345 ~~~~~~p~~~~g~~~g~~~~~~~~~~~~gp~~~g~l~~~~g~~ 387 (426)
T PRK12307 345 FLYDYFPLEVRGLGTGLIYNLAATSGTFNSMAATWLGITMGLG 387 (426)
T ss_pred HHHHhCcHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHcccHH
Confidence 6789999999999999999999999999999999988887754
|
|
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.1e-29 Score=243.86 Aligned_cols=357 Identities=15% Similarity=0.102 Sum_probs=232.0
Q ss_pred chhhhHHHHhhhhhhhcccchhHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHhhhhhhhhhHHHHHhhcCCCCCcc
Q 014616 2 ALVGAIVGAASGGWINDAYGRKKATLLADVVFTAGAIIMAAAPDPYVLILGRLLVGLGVGIASVTAPVYIAEASPSEVRG 81 (421)
Q Consensus 2 ~~ig~~~g~~~~g~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~s~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg 81 (421)
..+++.+++++.|+++||+|||+++.++.++++++++++++++|++.+++.|++.|++.|...+....++.|++|+++|+
T Consensus 67 ~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg 146 (434)
T PRK11663 67 FYITYGVSKFVSGIVSDRSNARYFMGIGLIATGIINILFGFSSSLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTERG 146 (434)
T ss_pred HHHHHHHHHhhhhHHHhhcCCchhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHHHH
Confidence 35788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhchHHHHHHHHHHHHHHHhhhcccCCccchHHHHhhHHHHHHHH-HHhhcCCcChHHHHhcCCHHHHHHHHHHhcChh
Q 014616 82 GLVSTNVLMITSGQFLSYLVNLAFTEVPGTWRWMLGVSAVPAIIQF-VLMLFMPESPRWLFMKSDKEKAILVLSKIYDIA 160 (421)
Q Consensus 82 ~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~Wr~~f~~~~~~~l~~~-~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~ 160 (421)
+.++........|..+++.+...+.... +||+.|++.++..++.. +..+++||+|.+...+.+.+...+
T Consensus 147 ~~~~~~~~~~~~g~~~~~~~~~~l~~~~-gw~~~f~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~--------- 216 (434)
T PRK11663 147 GWWAIWNTAHNVGGALIPLVVGAIALHY-GWRYGMMIAGIIAIVVGLFLCWRLRDKPQAMGLPSVGEWRHD--------- 216 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcc-cHHHHHHHHHHHHHHHHHHHHHHcCCCHhhcCCCCccccccc---------
Confidence 9999998888999998887776665544 59999998887665543 345567888865321111100000
Q ss_pred hhHHHHHHHHHHHHHHHhhccccc-H-HHhhcchhHHHHHHHHHHHHHHHhhcCcceehhchHHHH-HHcCCCChHHHHH
Q 014616 161 RLEDEIDHLSAAAEEELRKKKTVR-Y-LDVFKSKEIRLAFLAGAGLQAFQQFTGINTVMYYSPTIV-QMAGFQSNQLALL 237 (421)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~ 237 (421)
..+ ..++.+.++.+... . ...++++.++......... .........+.|.++ ++.|++..+.+..
T Consensus 217 -~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~p~~l~~~~g~s~~~a~~~ 284 (434)
T PRK11663 217 -ALE------LAQQQEGAGLSRKEILTKYVLLNPYIWLLSFSYVLV-----YVVRAAINDWGNLYMSETLGVDLVTANSA 284 (434)
T ss_pred -ccc------cchhccccCCChhhhHHHHHhcChHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHhccCCCHHHHHHH
Confidence 000 00000000000000 1 1245566655433321111 111122334556666 4568887766555
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhc--CChhHH-HHhhHHHHHHHHHHHHHHhhCCCCCCCcchhHHHHHHHHHHHHHhhcc
Q 014616 238 LSLAVAGTNAVGTIVGIYLIDHF--GRKKLA-LSSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLALYIAFFAPG 314 (421)
Q Consensus 238 ~~~~~~~~~~~g~~~~g~l~dr~--grr~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 314 (421)
.... .....++.+++|+++||+ ++|+.. ........+..+.+.. . . .. + ..+.... .+...++..+
T Consensus 285 ~~~~-~~~~~~g~~~~g~l~dr~~~~~r~~~~~~~~~~~~~~~~~~~~--~-~-~~--~--~~~~~~~--~~~~g~~~~~ 353 (434)
T PRK11663 285 VSMF-ELGGFIGALVAGWGSDKLFNGNRGPMNLIFAAGILLSVGSLWL--M-P-FA--S--YVMQAAC--FFTIGFFVFG 353 (434)
T ss_pred HHHH-HHHHHHHHHHHhhhHHHhccCCccHHHHHHHHHHHHHHHHHHH--c-c-cc--c--HHHHHHH--HHHHHHHHhh
Confidence 5444 445789999999999998 333332 2212222222211111 1 1 10 1 1111111 1111111222
Q ss_pred cccccceeccccCccchhhhhhHHHHHHHHHHHHHHHHHhHHHHHHcCcchhhHHHHHHHHHHHHHHHhhccCCCCC
Q 014616 315 MGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELVGTGATFLILAGIAVLAVVFVILFVPETQGL 391 (421)
Q Consensus 315 ~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~et~~~ 391 (421)
..........|.+|++.|+++.|+.++.+++++.++|..++.+.+..|+...|++.++++++..+..+...++++++
T Consensus 354 ~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~p~~~g~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 430 (434)
T PRK11663 354 PQMLIGMAAAECSHKEAAGAATGFVGLFAYLGAALSGYPLAKVLEIWHWTGFFVVISIAAGISALLLLPFLNAQAPR 430 (434)
T ss_pred HHHHHHHHHHhcccHhhHHhHHHHHHHHHHHHHHHhcccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhhhchh
Confidence 22222345689999999999999999999999999999999999999988888888888877766666555555433
|
|
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.8e-29 Score=234.87 Aligned_cols=322 Identities=13% Similarity=0.066 Sum_probs=209.9
Q ss_pred chhhhHHHHhhhhhhhcccchhHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHhhhhhhhhhHHHHHhhcCCCCCcc
Q 014616 2 ALVGAIVGAASGGWINDAYGRKKATLLADVVFTAGAIIMAAAPDPYVLILGRLLVGLGVGIASVTAPVYIAEASPSEVRG 81 (421)
Q Consensus 2 ~~ig~~~g~~~~g~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~s~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg 81 (421)
+.+|+++++++.|+++||+|||+++..+......+.......+|+..+++.|+++|+|+|. .......++|++|+|+|+
T Consensus 35 ~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~~~-~~~~~~~~~~~~~~~~r~ 113 (368)
T TIGR00903 35 YPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAGRLLDPFNYEWLLACQLLAALGQPF-LLNAFAPAASQIREERRD 113 (368)
T ss_pred HHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhHhHH-HHHHHHHHHHHcCHHHHH
Confidence 4678999999999999999999987766555544443334447999999999999999996 455666679999999999
Q ss_pred chhchHHHHHHHHHHHHHHHhhhcccCCccchHHHHhhHHHHHHHH-HHhhcCCcChHHHHhcCCHHHHHHHHHHhcChh
Q 014616 82 GLVSTNVLMITSGQFLSYLVNLAFTEVPGTWRWMLGVSAVPAIIQF-VLMLFMPESPRWLFMKSDKEKAILVLSKIYDIA 160 (421)
Q Consensus 82 ~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~Wr~~f~~~~~~~l~~~-~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~ 160 (421)
++.+....+...|..++++++..+.+.. +||+.|++.++++++.. +.++++||+|++.. +..+
T Consensus 114 ~a~~~~~~~~~lG~~l~~~~~~~l~~~~-gWr~~f~~~~~l~~~~~~~~~~~lp~~p~~~~---~~~~------------ 177 (368)
T TIGR00903 114 LVISLLSFAMYLGIIFALAAGLKIYTAG-GLQLLIIPIAAVAAAGIILVLAALPALPFQAA---EGFG------------ 177 (368)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcc-chHHHHHHHHHHHHHHHHHHHHHcCCCCCCCC---CCcc------------
Confidence 9999999999999999998888776654 59999999777666544 44567899986521 0000
Q ss_pred hhHHHHHHHHHHHHHHHhhcccccHHHhhcchhHHHHHHHHHHHHHHHhhcCcceehhchHHHHHHcCCCChHHHHHHHH
Q 014616 161 RLEDEIDHLSAAAEEELRKKKTVRYLDVFKSKEIRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQMAGFQSNQLALLLSL 240 (421)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 240 (421)
. + + . ..++++++++|.++.......+. ....+....+.|.++++.|++.. .+....+
T Consensus 178 ---~--~-------~-~----~~~~~~ll~~~~~~~~~~~~~~~-----~~~~~~~~~wlp~~L~~~g~s~~-~~~~~~l 234 (368)
T TIGR00903 178 ---F--K-------D-A----VKEFGALAGRKDLWIIGAILGFG-----VALFDNLAIWLEAALRPAGLEDI-AGDAVAL 234 (368)
T ss_pred ---h--H-------H-H----HHHHHHHHcChhHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHCCCChH-HHHHHHH
Confidence 0 0 0 0 01245678888876654433222 22233344578888887777643 3444333
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCh---hHHHH-hhHHHHHHHHHHHHHHhhCCCCCCCcchhHHHHHHHHHHHHHhhcccc
Q 014616 241 AVAGTNAVGTIVGIYLIDHFGRK---KLALS-SLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLALYIAFFAPGMG 316 (421)
Q Consensus 241 ~~~~~~~~g~~~~g~l~dr~grr---~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 316 (421)
+. ..+.+..++++||..|| +.... ..... +........ . . + . ........ ...++..+..
T Consensus 235 ~~----~~g~~g~~~~~d~~~r~~~r~~~~~~~~~~~--a~~~~~~~~-~-~--~---~--~~~~~~~~-l~~~~~~~~~ 298 (368)
T TIGR00903 235 AI----LAGLIGVAVIPDRVARAGLRSIYIRAAALLI--AAFFLALAF-E-L--N---R--LALFAFIG-IAGLLMLPAY 298 (368)
T ss_pred HH----HHHHHHHHHhhHHhhhhhhHHHHHHHHHHHH--HHHHHHHHH-c-c--c---c--HHHHHHHH-HHHHhhhhhH
Confidence 32 33445567888887654 22221 11111 111111111 1 0 0 0 11111111 1222333344
Q ss_pred cccceeccccCccchhhhhhHHHHHHHHHHHHHHHHHhHHHHHHcCcchhhHHHHHHHHHHHHHH
Q 014616 317 PVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELVGTGATFLILAGIAVLAVVFV 381 (421)
Q Consensus 317 ~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 381 (421)
+..+++.+|.+|++.|+++.|+.+..++++++.++...+.+.. +....|..++...+++.+..
T Consensus 299 ~~~~~~~~~~~p~~~rgt~~G~~~~~g~~~~~~~~~~~~~~~~--~~~~~f~~~~~~~~i~~~~~ 361 (368)
T TIGR00903 299 AIIMDWIGKFCDKELHGKAAGAIGFTSRAISVALALAAMLFIS--SAEAYFTFLAILITIAFAIA 361 (368)
T ss_pred HHHHHHHHHhcchhhcCcccchhhHHHHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHHH
Confidence 5566788999999999999999999999999998888876662 55577888877777765554
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.7e-29 Score=236.04 Aligned_cols=334 Identities=15% Similarity=0.162 Sum_probs=226.5
Q ss_pred chhhhHHHHhhhhhhhcccchhHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHhhhhhhhhhHHHHHhhcCCCCCcc
Q 014616 2 ALVGAIVGAASGGWINDAYGRKKATLLADVVFTAGAIIMAAAPDPYVLILGRLLVGLGVGIASVTAPVYIAEASPSEVRG 81 (421)
Q Consensus 2 ~~ig~~~g~~~~g~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~s~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg 81 (421)
..+++.+++++.|+++||+|||+++..+.++++++++.+++++|++.+++.|+++|++.+...+....++.|++| ++|+
T Consensus 53 ~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~~~~~~~~~~a~~~~~ll~~r~l~Gig~~~~~~~~~~~~~~~~~-~~~~ 131 (393)
T PRK09705 53 PVVTMGGLALAGSWLHQHVSERRSVAISLLLIAVGALMRELYPQSALLLSSALLGGVGIGIIQAVMPSVIKRRFQ-QRTP 131 (393)
T ss_pred HHHHHHHHhhhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHCcchHHHHHHHHHHHhHHHHHhhhhhHHHHHHcc-ccch
Confidence 357899999999999999999999999999999999999999999999999999999999999999999999997 7899
Q ss_pred chhchHHHHHHHHHHHHHHHhhhcccCCccchHHHHhhHHHHHHHHHHhhcC-CcChHHHHhcCCHHHHHHHHHHhcChh
Q 014616 82 GLVSTNVLMITSGQFLSYLVNLAFTEVPGTWRWMLGVSAVPAIIQFVLMLFM-PESPRWLFMKSDKEKAILVLSKIYDIA 160 (421)
Q Consensus 82 ~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~Wr~~f~~~~~~~l~~~~~~~~~-~esp~~~~~~~~~~~~~~~~~~~~~~~ 160 (421)
++.+....+...|..+++.++..+.++..+||+.+.+.++..++.++.++.. ++.|+ ++
T Consensus 132 ~~~g~~~~~~~~g~~~g~~~~~~l~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~-------------- 191 (393)
T PRK09705 132 LVMGLWSAALMGGGGLGAAITPWLVQHSETWYQTLAWWALPAVVALFAWWWQSAREVA------SS-------------- 191 (393)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhcCCCc------cc--------------
Confidence 9999888888888888887776665554469998877665554443333222 12111 00
Q ss_pred hhHHHHHHHHHHHHHHHhhcccccHHHhhcchhHHHHHHHHHHHHHHHhhcCcceehhchHHHHHHcCCCChHHHHHHHH
Q 014616 161 RLEDEIDHLSAAAEEELRKKKTVRYLDVFKSKEIRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQMAGFQSNQLALLLSL 240 (421)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 240 (421)
.+++ ...++.+++++.+........ ....+.....+.|.++++.|.+..+.+.....
T Consensus 192 ----------------~~~~--~~~~~~l~~~~~~~l~~~~~~-----~~~~~~~~~~~lp~~l~~~g~s~~~ag~~~~~ 248 (393)
T PRK09705 192 ----------------HKTT--TTPVRVVFTPRAWTLGVYFGL-----INGGYASLIAWLPAFYIEIGASAQYSGSLLAL 248 (393)
T ss_pred ----------------cCCC--cCCcccccCHhHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHcCCChhhhhHHHHH
Confidence 0000 011234455554433222111 11122233345667777788877666655554
Q ss_pred HHHHHHHHHHHHHHHHHhhcCChhHHHHhhHHHHHHHHHHHHHHhhCCCCCCCcchhHHHHHHHHHHHHHhhcccccccc
Q 014616 241 AVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLALYIAFFAPGMGPVPW 320 (421)
Q Consensus 241 ~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 320 (421)
.....+++.++.+++.||.+||+....+.....++..++.+ .... .. ..... . ..+...+..+...
T Consensus 249 -~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~~~~~~~~~~---~~~~-----~~-~~~~~--l--~g~g~g~~~~~~~ 314 (393)
T PRK09705 249 -MTLGQAAGALLMPAMARHQDRRKLLMLALVLQLVGFCGFIW---LPLQ-----LP-VLWAM--V--CGLGLGGAFPLCL 314 (393)
T ss_pred -HHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHH---ccch-----HH-HHHHH--H--HHHhccchHHHHH
Confidence 44557999999999999999998876655444444333221 1110 00 11111 1 1111122234444
Q ss_pred eeccccC-ccchhhhhhHHHHHHHHHHHHHHHHHhHHHHHHcCc-chhhHHHHHHHHHHHHHHHhhccCCCCCCH
Q 014616 321 TLNSEVY-PEQYRGICGGMSATVNWISNLIVAQTFLTVAELVGT-GATFLILAGIAVLAVVFVILFVPETQGLTF 393 (421)
Q Consensus 321 ~~~~e~~-p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~et~~~~~ 393 (421)
....+.+ |++.|++..|+.+..+++++.+++...+++.|..|. ...|.+..+.++...+..+.+.|||+++..
T Consensus 315 ~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (393)
T PRK09705 315 LLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSISGNYLMDWAFHALCVVGLMIITLRFAPARFPQLW 389 (393)
T ss_pred HHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHhccccccchh
Confidence 4555666 467899999999999999999999999999998874 455666666666666666778899876654
|
|
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.6e-28 Score=222.97 Aligned_cols=327 Identities=21% Similarity=0.241 Sum_probs=239.3
Q ss_pred chhhhHHHHhhhhhhhcccchhHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHhhhhhhhhhHHHHHhhcCCCCCcc
Q 014616 2 ALVGAIVGAASGGWINDAYGRKKATLLADVVFTAGAIIMAAAPDPYVLILGRLLVGLGVGIASVTAPVYIAEASPSEVRG 81 (421)
Q Consensus 2 ~~ig~~~g~~~~g~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~s~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg 81 (421)
+-.|+.+|+++...+.||+.||++++..+.++.++++++++++||+++++.|++.|+.+|..++....+..|..|+++|+
T Consensus 57 yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l~lFi~~n~l~alAp~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~ 136 (394)
T COG2814 57 YALGVALGAPLLALLTGRLERRRLLLGLLALFIVSNLLSALAPSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRG 136 (394)
T ss_pred HHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchh
Confidence 34688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhchHHHHHHHHHHHHHHHhhhcccCCccchHHHHhhHHHHHHHHHH-hhcCCcChHHHHhcCCHHHHHHHHHHhcChh
Q 014616 82 GLVSTNVLMITSGQFLSYLVNLAFTEVPGTWRWMLGVSAVPAIIQFVL-MLFMPESPRWLFMKSDKEKAILVLSKIYDIA 160 (421)
Q Consensus 82 ~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~Wr~~f~~~~~~~l~~~~~-~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~ 160 (421)
++++....+...+..+|.+++.++.+..+ ||+.|++.+..+++.++. +..+| |+... +
T Consensus 137 ~Aiaiv~~G~tlA~v~GvPLGt~ig~~~G-WR~~F~~ia~l~ll~~~~~~~~lP--~~~~~--~---------------- 195 (394)
T COG2814 137 RALALVFTGLTLATVLGVPLGTFLGQLFG-WRATFLAIAVLALLALLLLWKLLP--PSEIS--G---------------- 195 (394)
T ss_pred hHHHHHHHHHHHHHHHhccHHHHHHHHhh-HHHHHHHHHHHHHHHHHHHHHhCC--CccCC--C----------------
Confidence 99999999999999999999988877765 999999999988887655 55677 21000 0
Q ss_pred hhHHHHHHHHHHHHHHHhhcccccHHHhhcchhHHHHHHHHHHHHHHHhhcCcceehhchHHHHHHcCCCChHHHHHHHH
Q 014616 161 RLEDEIDHLSAAAEEELRKKKTVRYLDVFKSKEIRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQMAGFQSNQLALLLSL 240 (421)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 240 (421)
..+.+..+..+.+|+|.++..+..... .....+....|..|.+.+..|++....+..+..
T Consensus 196 ----------------~~~~~~~~~~~~l~~p~v~~~l~~t~l----~~~g~F~~ftYi~P~L~~v~g~s~~~vs~~Ll~ 255 (394)
T COG2814 196 ----------------SLPGPLRTLLRLLRRPGVLLGLLATFL----FMTGHFALYTYIRPFLESVAGFSVSAVSLVLLA 255 (394)
T ss_pred ----------------CCCcchhHHHHHhcCchHHHHHHHHHH----HHcchhhhHHhHHHHHHHccCCCHhHHHHHHHH
Confidence 001111234567888888776554321 112222333466777777889988777766555
Q ss_pred HHHHHHHHHHHHHHHHHhhcCChhHHHHhhHHHHHHHHHHHHHHhhCCCCCCCcchhHHHHHHHHHHHHHhhccccccc-
Q 014616 241 AVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLALYIAFFAPGMGPVP- 319 (421)
Q Consensus 241 ~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~- 319 (421)
+++..++|+.++|++.|| +.|+.+........+....+.+. .. ..+.......++ .+.....+..
T Consensus 256 -~Gv~~~~Gn~~gGrl~dr-~~~~~l~~~~~l~a~~~l~l~~~--~~--------~~~~~~~~~~~w--g~a~~~~~~~~ 321 (394)
T COG2814 256 -FGIAGFIGNLLGGRLADR-GPRRALIAALLLLALALLALTFT--GA--------SPALALALLFLW--GFAFSPALQGL 321 (394)
T ss_pred -HHHHHHHHHHHHhhhccc-cchhHHHHHHHHHHHHHHHHHHh--cc--------hHHHHHHHHHHH--HHHhhhhhhHH
Confidence 455579999999999999 77777665544444444433221 10 112222222221 1222222222
Q ss_pred ceeccccCccchhhhhhHHHHHHHHHHHHHHHHHhHHHHHHcCcchhhHHHHHHHHHHHHHHHhh
Q 014616 320 WTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELVGTGATFLILAGIAVLAVVFVILF 384 (421)
Q Consensus 320 ~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 384 (421)
+....+ .-++.+..+.+++....+++...+..+-+...+..|+....++.+...+++.+..+..
T Consensus 322 ~~~~a~-~~p~~~~~a~sl~~aa~nlgia~GA~lGG~v~~~~g~~~~~~~~a~l~~~a~~~~~~~ 385 (394)
T COG2814 322 QTRLAR-LAPDAADLAGSLNVAAFNLGIALGAALGGLVLDALGYAATGWVGAALLLLALLLALLS 385 (394)
T ss_pred HHHhcc-cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHH
Confidence 233344 3356788999999999999999999999999999888888888888877776666543
|
|
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.9e-28 Score=232.89 Aligned_cols=326 Identities=17% Similarity=0.157 Sum_probs=223.2
Q ss_pred hhhhHHHHhhhhhhhcccchhHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHhhhhhhhhhHHHHHhhcCCCCCccc
Q 014616 3 LVGAIVGAASGGWINDAYGRKKATLLADVVFTAGAIIMAAAPDPYVLILGRLLVGLGVGIASVTAPVYIAEASPSEVRGG 82 (421)
Q Consensus 3 ~ig~~~g~~~~g~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~s~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg~ 82 (421)
.+++.+++++.|+++||+|||+++..+.++++++++.+++++|++.+++.|+++|++.+...+...+++.|++|+|+|++
T Consensus 54 ~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~r~~ 133 (390)
T PRK03545 54 AWVVALMSLPLMLLTSNVERRKLLIGLFVLFIASHVLSALAWNFTVLLISRIGIAFAHAIFWSITASLAIRVAPAGKKAQ 133 (390)
T ss_pred HHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhh
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhchHHHHHHHHHHHHHHHhhhcccCCccchHHHHhhHHHHHHHHHH-hhcCCcChHHHHhcCCHHHHHHHHHHhcChhh
Q 014616 83 LVSTNVLMITSGQFLSYLVNLAFTEVPGTWRWMLGVSAVPAIIQFVL-MLFMPESPRWLFMKSDKEKAILVLSKIYDIAR 161 (421)
Q Consensus 83 ~~~~~~~~~~~g~~l~~~~~~~~~~~~~~Wr~~f~~~~~~~l~~~~~-~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~ 161 (421)
..+....+...|..++++++..+.+.. +||+.|++.++..++..+. ...+||.|+. +++
T Consensus 134 ~~g~~~~~~~~g~~ig~~l~~~l~~~~-gw~~~f~~~~~~~~l~~~~~~~~~~~~~~~-----~~~-------------- 193 (390)
T PRK03545 134 ALSLLATGTALAMVLGLPLGRVIGQYL-GWRTTFLAIGGGALITLLLLIKLLPLLPSE-----HSG-------------- 193 (390)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHh-cHHHHHHHHHHHHHHHHHHHHHhCCCCCCC-----Ccc--------------
Confidence 999999999999999988887665544 5999999988776655443 3445665420 000
Q ss_pred hHHHHHHHHHHHHHHHhhcccccHHHhhcchhHHHHHHHHHHHHHHHhhcCcceehhchHHHHHHcCCCChHHHHHHHHH
Q 014616 162 LEDEIDHLSAAAEEELRKKKTVRYLDVFKSKEIRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQMAGFQSNQLALLLSLA 241 (421)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 241 (421)
+..+..+.+|+|.++........... ... ....+..|++.+..|.+..+.+......
T Consensus 194 -------------------~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---~~~~~~~~~l~~~~g~s~~~~~~~~~~~ 250 (390)
T PRK03545 194 -------------------SLKSLPLLFRRPALVSLYLLTVVVVT-AHF---TAYSYIEPFVQQVAGLSENFATLLLLLF 250 (390)
T ss_pred -------------------hHHHHHHHHhCcHHHHHHHHHHHHHH-HHH---HHHHHHHHHHHHhcCCCccHHHHHHHHH
Confidence 00012345667766543332221111 111 1112333444445677776666555444
Q ss_pred HHHHHHHHHHHHHHHHhhcCChhHHHHhhHHHHHHHHHHHHHHhhCCCCCCCcchhHHHHHHHHHHHHHhhcccccccce
Q 014616 242 VAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLALYIAFFAPGMGPVPWT 321 (421)
Q Consensus 242 ~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 321 (421)
....+++.++.+++.||.+||..... ......+...+.. .. .+ . +.......+. ........+...+
T Consensus 251 -~~~~~~g~~~~g~l~dr~~~~~~~~~-~~~~~~~~~~l~~--~~---~~----~-~~~~~~~~l~-g~~~~~~~~~~~~ 317 (390)
T PRK03545 251 -GGAGIIGSVLFSRLGNRHPSGFLLIA-IALLLVCLLLLLP--AA---NS----E-WHLSVLSIFW-GIAIMCIGLAMQV 317 (390)
T ss_pred -HHHHHHHHHHHHHHhhccchhHHHHH-HHHHHHHHHHHHH--Hh---ch----H-HHHHHHHHHH-HHHHhcchHHHHH
Confidence 44578999999999999998765432 2222222211111 11 00 1 1111111111 1112222333345
Q ss_pred eccccCccchhhhhhHHHHHHHHHHHHHHHHHhHHHHHHcCcchhhHHHHHHHHHHHHHHHhhc
Q 014616 322 LNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELVGTGATFLILAGIAVLAVVFVILFV 385 (421)
Q Consensus 322 ~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 385 (421)
...|..| +.|+.+.|..+...+++..+++...+.+.+..|+...+++.+.+.+++++..+...
T Consensus 318 ~~~~~~~-~~~~~~~g~~~~~~~~g~~~G~~~~G~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 380 (390)
T PRK03545 318 KVLKLAP-DATDVAMALFSGIFNIGIGAGALLGNQVSLHLGLSSIGYVGAALALAALVWSILIF 380 (390)
T ss_pred HHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHc
Confidence 5667766 57899999999999999999999999999999998899888888888777665554
|
|
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.2e-29 Score=240.68 Aligned_cols=347 Identities=15% Similarity=0.160 Sum_probs=219.1
Q ss_pred chhhhHHHHhhhhhhhcccchhHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHhhhhhhhhhHHHHHhhcCCCCCcc
Q 014616 2 ALVGAIVGAASGGWINDAYGRKKATLLADVVFTAGAIIMAAAPDPYVLILGRLLVGLGVGIASVTAPVYIAEASPSEVRG 81 (421)
Q Consensus 2 ~~ig~~~g~~~~g~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~s~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg 81 (421)
..+++.+++++.|+++||+|||+++..+.+++++++.++++++|++.+++.|+++|++.|...+....++.|++|+++|+
T Consensus 52 ~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg 131 (412)
T TIGR02332 52 FYAAYVICGIPSNIMLAIIGARRWIAGIMVLWGIASTATMFATGPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRA 131 (412)
T ss_pred HHHHHHHHHhhHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHH
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhchHHHHHHHHHHHHHHHhhhccc-----CCccchHHHHhhHHHHHHHHH-HhhcCCcChHHHHhcCCHHHHHHHHHH
Q 014616 82 GLVSTNVLMITSGQFLSYLVNLAFTE-----VPGTWRWMLGVSAVPAIIQFV-LMLFMPESPRWLFMKSDKEKAILVLSK 155 (421)
Q Consensus 82 ~~~~~~~~~~~~g~~l~~~~~~~~~~-----~~~~Wr~~f~~~~~~~l~~~~-~~~~~~esp~~~~~~~~~~~~~~~~~~ 155 (421)
+.++........|..+++.++..+.. ...+||+.|++.++++++..+ .++++||+|+......++++ ....+.
T Consensus 132 ~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~l~~~~~~~~~~~~~p~~~~~l~~~~~-~~~~~~ 210 (412)
T TIGR02332 132 RANALFMIAMPVTMALGLILSGYILALDGLMALKGWQWLFLLEGFPSVILGVMTWFWLDDSPDKAKWLDEEDK-KALKEM 210 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccchhHHHHHHHHHHHHHHHHHhhccCCCcccCCCCCHHHH-HHHHHH
Confidence 99999999989999998888765532 123699999998887766544 45678999853110001111 000000
Q ss_pred hcChhhhHHHHHHHHHHHHHHHhhcc-cccHHHhhcchhHHHHHHHHHHHHHHHhhcCcceehhchHHHHHHc--CCCCh
Q 014616 156 IYDIARLEDEIDHLSAAAEEELRKKK-TVRYLDVFKSKEIRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQMA--GFQSN 232 (421)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--g~~~~ 232 (421)
. ..+.. +.++. ....+.++.+ ...+++++ ++.++..... .++.....+....+.|.++++. +.+..
T Consensus 211 ~-~~~~~--~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-----~~~~~~~~~~~~~~~p~~l~~~~~~~s~~ 279 (412)
T TIGR02332 211 I-DNDQL--TLEQP--EGAFAHAAMPQRSMLREIF-TPAIMLYTLA-----YFCLTNTLSAINIWTPQILQSFNQGSSNI 279 (412)
T ss_pred H-Hhccc--ccccc--ccccccccccHHHHHHHhc-ChHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHhcCCCCcHH
Confidence 0 00000 00000 0000000000 11133333 3444332221 1222223334455778888764 44544
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHH-HhhHHHHHHHHHHHHHHhhCCCCCCCcchhHHHHHHHHHHHHHh
Q 014616 233 QLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLAL-SSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLALYIAFF 311 (421)
Q Consensus 233 ~~~~~~~~~~~~~~~~g~~~~g~l~dr~grr~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (421)
+.+..... .....+++.+++|+++||++||+... .......++. .... ... . . .......... .+.
T Consensus 280 ~~~~~~~~-~~l~~~~g~l~~g~l~dr~~~r~~~~~~~~~~~~~~~---~~~~--~~~-~--~---~~~~~~~~~~-~~g 346 (412)
T TIGR02332 280 MIGLLAAI-PQFCTIFGMIWWSRHSDRLKERKHHTALPYLFAAAGW---LLAS--ATD-H--N---LIQLLGIIMA-SMG 346 (412)
T ss_pred HhHHHhhH-HHHHHHHHHHHHHHHhcccCccHHHHHHHHHHHHHHH---HHHH--hcC-C--H---HHHHHHHHHH-HHH
Confidence 54544444 44557899999999999999776432 2222222221 1111 111 0 0 1111111111 111
Q ss_pred hcccccccceeccccCccchhhhhhHHHHHHHHHHHHHHHHHhHHHHHHcC-cchhhHHHHHH
Q 014616 312 APGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELVG-TGATFLILAGI 373 (421)
Q Consensus 312 ~~g~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~ 373 (421)
.....+..+....|.+|++.|+++.|+.++..++++++++.+.+.+.+..| |...+.+.+++
T Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~a~g~~~~~~~~g~~~~p~~~g~i~~~~g~~~~~~~~~~~~ 409 (412)
T TIGR02332 347 SFSAMAIFWTTPDQSISLQARAIAIAVINATGNIGSALSPFLIGILKDATGSFNSGLWFVAAL 409 (412)
T ss_pred hhhhhhHHHhhcccccchHHHHHHHHHHHHhhhhhhhhhhhhcccccccCCCCchhHHHHHHH
Confidence 112223444556788999999999999999999999999999988888775 66666655554
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.4e-29 Score=244.65 Aligned_cols=351 Identities=17% Similarity=0.131 Sum_probs=223.3
Q ss_pred chhhhHHHHhhhhhhhcccchhHHHHHHHHHHHHHHHHHHh-----cCChhHHHHHHHHHHhhhhhhhhhHHHHHhhcCC
Q 014616 2 ALVGAIVGAASGGWINDAYGRKKATLLADVVFTAGAIIMAA-----APDPYVLILGRLLVGLGVGIASVTAPVYIAEASP 76 (421)
Q Consensus 2 ~~ig~~~g~~~~g~l~dr~Grr~~~~~~~~l~~i~~~~~~~-----~~s~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p 76 (421)
+.+++.+++++.|+++||+|||+++.++.+++++++...++ ++|++.+++.|+++|++.+...+....+++||+|
T Consensus 73 ~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~ 152 (467)
T PRK09556 73 FSITYGVGKTLVGYYADGKNTKQFLPFLLILSAICMLGFGASLGSGSVSLGLMIALWALSGFFQSTGGPCSYSTITRWTP 152 (467)
T ss_pred HHHHHHHHHhhhhhHhhccCccchHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhccchHHHHHHHHHcC
Confidence 46788999999999999999999999988888887776655 6899999999999999999999999999999999
Q ss_pred CCCccchhchHHHHHHHHHHHHHHHhhhcccC--CccchHHHHhhHHHHHHHHHH-hhcCCcChHHHHhcCCHHHHHHHH
Q 014616 77 SEVRGGLVSTNVLMITSGQFLSYLVNLAFTEV--PGTWRWMLGVSAVPAIIQFVL-MLFMPESPRWLFMKSDKEKAILVL 153 (421)
Q Consensus 77 ~~~rg~~~~~~~~~~~~g~~l~~~~~~~~~~~--~~~Wr~~f~~~~~~~l~~~~~-~~~~~esp~~~~~~~~~~~~~~~~ 153 (421)
+++||++++........|..+++.+....... .++||..|.+.++..++..+. +++.+|+|+.....++++.
T Consensus 153 ~~~rg~a~gi~~~~~~lG~~l~~~i~~~~~~~~~~~~~~~~f~~~g~~~~~~~i~~~~~~~~~p~~~~~~~~~~~----- 227 (467)
T PRK09556 153 RRKRGRFLGFWNISHNLGGAGAGGVALWGANYFFDGHVIGMFIFPSIIALIIGFIGLRYGSDSPEELGWGKAEEI----- 227 (467)
T ss_pred ccceeeeEEeeecccchhhhHHHHHHHHHHHhhccCcchhHHHHHHHHHHHHHHHHHHhCCCChhhcCCCChhhc-----
Confidence 99999999988888888888877665443222 235999988877766655444 4456777753221111110
Q ss_pred HHhcChhhhHHHHHHHHHHHHHHHhhcc-cc-cHHHhhcchhHHHHHHHHHHHHHHHhhcCcceehhchHHHHH-HcCCC
Q 014616 154 SKIYDIARLEDEIDHLSAAAEEELRKKK-TV-RYLDVFKSKEIRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQ-MAGFQ 230 (421)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~ 230 (421)
..+ ....+ .++.+.++.. .. .....++++.++...+..... .........+.|.+++ ..|.+
T Consensus 228 --~~~--~~~~~------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-----~~~~~~~~~~~p~yl~~~~g~s 292 (467)
T PRK09556 228 --FGE--PISEE------DKETESTDMTKWQIFVEYVLKNPVIWLLCFANIFL-----YIVRIGIDNWSPVYAFQELGFS 292 (467)
T ss_pred --ccC--ccchh------hhccccccCcHHHHHHHHHHcChHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHccCCC
Confidence 000 00000 0000000000 00 012357787776544332211 1112233456776664 57888
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHhhHHHHHHHHHHHHHHhhCCCCCCCcchhHHHHHHHHHHHHH
Q 014616 231 SNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLALYIAF 310 (421)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (421)
..+.+....... ...+++.+++|+++||++||+..........++...+.. .. ..+ . +........ ..+
T Consensus 293 ~~~a~~~~~~~~-~~~~ig~~~~G~lsDr~g~r~~~~~~~~~~~~~~~~~~~---~~-~~~----~-~~~~~~~~~-~G~ 361 (467)
T PRK09556 293 KEDAINTFTLFE-IGALVGSLLWGWLSDLANGRRALVACIALALIIFTLGVY---QH-ATS----E-YMYLASLFA-LGF 361 (467)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHH---Hh-cCc----H-HHHHHHHHH-HHH
Confidence 777665554444 447899999999999999988765433222222111111 11 111 1 111111111 111
Q ss_pred hhcccccccceeccccCccchhhhhhHHHHHHHHH-HHHHHHHHhHHHHH------------HcCcchhhHHHHHHHHHH
Q 014616 311 FAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWI-SNLIVAQTFLTVAE------------LVGTGATFLILAGIAVLA 377 (421)
Q Consensus 311 ~~~g~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~-~~~~~~~~~~~~~~------------~~g~~~~~~~~~~~~~~~ 377 (421)
...+..........|.+|++.||++.|+.++.+++ ++.+++.+.+.+.+ ..+|...|.++.+.++++
T Consensus 362 ~~~~~~~~~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~~~ 441 (467)
T PRK09556 362 LVFGPQLLIGVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIADPTKNGTPIFGYTLTGWAGTFAALDIAAIGC 441 (467)
T ss_pred HHhhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhcccccccccccccccChHHHHHHHHHHHHHH
Confidence 12222222234567999999999999999999997 66889999999988 566778888887777766
Q ss_pred HHHHHh
Q 014616 378 VVFVIL 383 (421)
Q Consensus 378 ~~~~~~ 383 (421)
.+..++
T Consensus 442 ~~~~~~ 447 (467)
T PRK09556 442 ICLMAI 447 (467)
T ss_pred HHHHHH
Confidence 554443
|
|
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=99.97 E-value=5e-28 Score=232.31 Aligned_cols=340 Identities=20% Similarity=0.277 Sum_probs=217.6
Q ss_pred chhhhHHHHhhhhhhhcccchhHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHhhhhhhhhhHHHHHhhcCCCCCcc
Q 014616 2 ALVGAIVGAASGGWINDAYGRKKATLLADVVFTAGAIIMAAAPDPYVLILGRLLVGLGVGIASVTAPVYIAEASPSEVRG 81 (421)
Q Consensus 2 ~~ig~~~g~~~~g~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~s~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg 81 (421)
..++..+++++.|+++||+|||+++.++.++.++++++++++++++.+++.|+++|++.+...+....++.|++|+++|+
T Consensus 56 ~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~ 135 (405)
T TIGR00891 56 ALISRWFGALMFGLWGDRYGRRLPMVTSIVLFSAGTLACGFAPGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRN 135 (405)
T ss_pred HHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhh
Confidence 35788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhchHHHHHHHHHHHHHHHhhhcccCCc-cchHHHHhhHHHHHHHHHHhhcCCcChHHHHhcCCHHHHHHHHHHhcChh
Q 014616 82 GLVSTNVLMITSGQFLSYLVNLAFTEVPG-TWRWMLGVSAVPAIIQFVLMLFMPESPRWLFMKSDKEKAILVLSKIYDIA 160 (421)
Q Consensus 82 ~~~~~~~~~~~~g~~l~~~~~~~~~~~~~-~Wr~~f~~~~~~~l~~~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~ 160 (421)
+..+........|..+++.++..+....+ +||+.|++.+++.++.++....+||+|++...+++++......+.....+
T Consensus 136 ~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (405)
T TIGR00891 136 KASGLLISGYAVGAVVAAQVYSLVVPVWGDGWRALFFISILPIIFALWLRKNIPEAEDWKEKHAGKALVRTMVDILYGGE 215 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHhCCCChhHHHHhhhhhhhhhHHHHHhccc
Confidence 99999998889999888887766544332 59999998777666666666678998766433221111100000000000
Q ss_pred hhHHHHHHHHHHHHHHHhhcccccHHHhhcchhHHHHHHHHHHHHHHHhhcCcceehhchHHHH-HHcCCCChHHHHHHH
Q 014616 161 RLEDEIDHLSAAAEEELRKKKTVRYLDVFKSKEIRLAFLAGAGLQAFQQFTGINTVMYYSPTIV-QMAGFQSNQLALLLS 239 (421)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~ 239 (421)
+.. +...+ +.....++.. ++.+...........+...... ....+.|.+. ++.|.+..+.+....
T Consensus 216 ------~~~----~~~~~-~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~s~~~~~~~~~ 281 (405)
T TIGR00891 216 ------HRI----ANIVM-TLAAAMVQSA--GKRWPTFVYLVVLVLFANLYSH-PIQDLLPTYLKADLGLSPHTVANIVV 281 (405)
T ss_pred ------hhh----hhhhh-hhhHHhhhhh--hhhhHHHHHHHHHHHHHHHHHh-hhhhhhHHHHHHHhCCCHHHHHHHHH
Confidence 000 00000 0000000000 1111111111111111111111 1222344444 567888777666555
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCChhHHHHhhHHHHHHHHHHHHHHhhCCCCCCCcchhHHHHHHHHHHHHHhhccccccc
Q 014616 240 LAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLALYIAFFAPGMGPVP 319 (421)
Q Consensus 240 ~~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 319 (421)
.. ....+++.++.+++.||++||+....+.....+....+ .. .. . .. +...... ....+...+..+..
T Consensus 282 ~~-~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~-~~--~~--~----~~-~~~~~~~-~~~~~~~~~~~~~~ 349 (405)
T TIGR00891 282 FS-NIGAIVGGCVFGFLGDWLGRRKAYVCSLLAGQLLIIPV-FA--IG--A----NV-AVLGLGL-FFQQMLVQGIWGIL 349 (405)
T ss_pred HH-HHHHHHHHHHHHHHHHHhCchhhhHHHHHHHHHHHHHH-HH--hC--C----ch-HHHHHHH-HHHHHHHccchhhH
Confidence 44 44578999999999999999988765543322111111 11 11 0 01 1111111 11122233344555
Q ss_pred ceeccccCccchhhhhhHHHHHHHHHHHHHHHHHhHHHHHHcC-cchhh
Q 014616 320 WTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELVG-TGATF 367 (421)
Q Consensus 320 ~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~ 367 (421)
..+.+|.+|++.|+++.|+.+....++..+++.+.+.+.+..| +...+
T Consensus 350 ~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~~g~~~~~~ 398 (405)
T TIGR00891 350 PKHLGEYFPTDQRAAGLGFTYQLGNLGGALAPIIGALLAQRLDEYGTAL 398 (405)
T ss_pred HHHHhhhCCcchhHHHhhHHHHHHHHHHHHHHHHHHHHHHhccccchhH
Confidence 6778999999999999999999999999999999999999888 54333
|
|
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.2e-28 Score=233.13 Aligned_cols=329 Identities=21% Similarity=0.277 Sum_probs=220.8
Q ss_pred hhhhHHHHhhhhhhhcccchhHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHhhhhhhhhhHHHHHhhcCCCCCccc
Q 014616 3 LVGAIVGAASGGWINDAYGRKKATLLADVVFTAGAIIMAAAPDPYVLILGRLLVGLGVGIASVTAPVYIAEASPSEVRGG 82 (421)
Q Consensus 3 ~ig~~~g~~~~g~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~s~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg~ 82 (421)
.++.++++++.|+++||+|||+++..+.++..++.+++++++|++.+++.|+++|++.+...+....++.|++|+|+|++
T Consensus 60 ~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~ 139 (406)
T PRK11551 60 ILGLLPGALLGGRLADRIGRKRILIVSVALFGLFSLATAQAWDFPSLLVARLLTGVGLGGALPNLIALTSEAVGPRLRGT 139 (406)
T ss_pred HHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHHHHH
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhchHHHHHHHHHHHHHHHhhhcccCCccchHHHHhhHHHHHHHHH-HhhcCCcChHHHHhcCCHHHHHHHHHHhcChhh
Q 014616 83 LVSTNVLMITSGQFLSYLVNLAFTEVPGTWRWMLGVSAVPAIIQFV-LMLFMPESPRWLFMKSDKEKAILVLSKIYDIAR 161 (421)
Q Consensus 83 ~~~~~~~~~~~g~~l~~~~~~~~~~~~~~Wr~~f~~~~~~~l~~~~-~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~ 161 (421)
..+........|..+++.++....... +||+.|++.++..++..+ ...++||+|++...++++++.
T Consensus 140 ~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~------------ 206 (406)
T PRK11551 140 AVSLMYCGVPFGGALASVIGVLAAGDA-AWRHIFYVGGVGPLLLVPLLMRWLPESRAFAQAAGAGKQR------------ 206 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcccc-CHHHHHHHHHHHHHHHHHHHHHhCCCChhHHhccCcchhh------------
Confidence 999988888899998888876555544 599999987765555443 345679988653221110000
Q ss_pred hHHHHHHHHHHHHHHHhhcccccHHHhhcc---hhHHHHHHHHHHHHHHHhhcCcceehhchHHHHHHcCCCChHHHHHH
Q 014616 162 LEDEIDHLSAAAEEELRKKKTVRYLDVFKS---KEIRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQMAGFQSNQLALLL 238 (421)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 238 (421)
++ .....+++ +......... +......+....+.|.+.++.|.+..+.+...
T Consensus 207 -----~~---------------~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~ 261 (406)
T PRK11551 207 -----AP---------------VLRALFGEGRATATLLLWISY-----FFTLIVLYFLLNWLPSLLVGQGLSRSQAGLVQ 261 (406)
T ss_pred -----hh---------------hHHHHhhhhhhhHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHhCCCChhhhhHHH
Confidence 00 00001111 1111111111 11111122233456777888888777766655
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCChhHHHHhhHHHHHHHHHHHHHHhhCCCCCCCcchhHHHHHHHHHHHHHhhcccccc
Q 014616 239 SLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLALYIAFFAPGMGPV 318 (421)
Q Consensus 239 ~~~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 318 (421)
.... ...+++.++.|++.||++||+..........++...+.. . . .. +.... ......+...+..+.
T Consensus 262 ~~~~-~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~---~-~-----~~--~~~~~-~~~~~g~~~~~~~~~ 328 (406)
T PRK11551 262 IAFN-IGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAALAA---A-P-----SF--AGMLL-AGFAAGLFVVGGQSV 328 (406)
T ss_pred HHHH-HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHh---c-C-----cH--HHHHH-HHHHHHHHHHhHHHH
Confidence 5544 457899999999999999998876544333333222211 0 0 01 11111 112222222334456
Q ss_pred cceeccccCccchhhhhhHHHHHHHHHHHHHHHHHhHHHHHHcCcc-hhhHHHHHHHHHHHHHHH
Q 014616 319 PWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELVGTG-ATFLILAGIAVLAVVFVI 382 (421)
Q Consensus 319 ~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~ 382 (421)
.+++..|.+|++.|+++.|+.++...++..+++.+.+.+.+..+.. ..++......++.....+
T Consensus 329 ~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (406)
T PRK11551 329 LYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLALGRSTVGVIGASIPVILVAALAAL 393 (406)
T ss_pred HHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhccCCchHHHHHHHHHHHHHHHHHHH
Confidence 6678899999999999999999999999999999999888765433 334444444444433333
|
|
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=9.6e-29 Score=223.70 Aligned_cols=356 Identities=18% Similarity=0.193 Sum_probs=246.4
Q ss_pred chhhhHHHHhhhhhhhcccchhHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHhhhhhhhhhHHHHHhhcCCCCCcc
Q 014616 2 ALVGAIVGAASGGWINDAYGRKKATLLADVVFTAGAIIMAAAPDPYVLILGRLLVGLGVGIASVTAPVYIAEASPSEVRG 81 (421)
Q Consensus 2 ~~ig~~~g~~~~g~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~s~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg 81 (421)
+.+.+-++.++.|.++||.++|..+.+++++.++.+++.++++|...+.++-++.|...|...|.+...++.|+|++|||
T Consensus 73 f~i~YG~sKf~~G~~sDr~npr~fm~~gLilsai~nil~Gfs~s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG 152 (448)
T COG2271 73 FSITYGVSKFVMGVLSDRSNPRYFMAFGLILSAIVNILFGFSPSLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKERG 152 (448)
T ss_pred HHHHHHHHHHHhhhhcccCCCceeehHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccccC
Confidence 45788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhchHHHHHHHHHHHHHHHh--hhcccCCccchHHHHhhHHHHHHHHHH-hhcCCcChHHHHhcCCHHHHHHHHHHhcC
Q 014616 82 GLVSTNVLMITSGQFLSYLVN--LAFTEVPGTWRWMLGVSAVPAIIQFVL-MLFMPESPRWLFMKSDKEKAILVLSKIYD 158 (421)
Q Consensus 82 ~~~~~~~~~~~~g~~l~~~~~--~~~~~~~~~Wr~~f~~~~~~~l~~~~~-~~~~~esp~~~~~~~~~~~~~~~~~~~~~ 158 (421)
+..+..+...++|..+.+++. ..+..+. +||..|+..++.+++..++ ++..+|+|+-.-.++-+|..
T Consensus 153 ~~~siWn~shNiGGal~~~~~~la~~~~~~-~w~~~f~~pgiiaiival~~~~~~rd~Pqs~GLP~ie~~~--------- 222 (448)
T COG2271 153 TWWSIWNTSHNIGGALAPLVALLAFFAFHG-GWRAAFYFPGIIAIIVALILLFLLRDRPQSEGLPPIEEYR--------- 222 (448)
T ss_pred ceEEEehhhhhcccchHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHHHHHHHHhCCCccccCCCCHHHhh---------
Confidence 999999999999888877766 4444333 6999999999888776544 56678888643222211110
Q ss_pred hhhhHHHHHHHHHHHHHHHhhcccccHHHhhcchhHHHHHHHHHHHHHHHhhcCcceehhchHHHHH-HcCCCChHHHHH
Q 014616 159 IARLEDEIDHLSAAAEEELRKKKTVRYLDVFKSKEIRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQ-MAGFQSNQLALL 237 (421)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~ 237 (421)
+++.+...++++.+.-..+..-.+-.++||.+|...+....... .-+.+..+.|.++. ..|++.......
T Consensus 223 ----~d~~e~~~~~~~~~~ls~~~i~~~YVL~Nk~iW~la~a~vfvYi-----vR~gi~dW~p~YL~e~k~~s~~~a~~a 293 (448)
T COG2271 223 ----GDPLEIYEEEKENEGLTAWQIFVKYVLKNKLIWLLALANVFVYV-----VRYGINDWGPLYLSEVKGFSLVKANWA 293 (448)
T ss_pred ----cCchhhhhhhccCCCccHHHHHHHHHHcChHHHHHHHHHHHHHH-----HHHHHhhhHHHHHHHhcCCCHHHHHHH
Confidence 00000000000000000011224456889988876665443211 12344457777775 568877766666
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhc--CChhHHHHhhHHHHHHHHHHHHHHhhCCCCCCCcchhHHHHHHHHHHHHHhhccc
Q 014616 238 LSLAVAGTNAVGTIVGIYLIDHF--GRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLALYIAFFAPGM 315 (421)
Q Consensus 238 ~~~~~~~~~~~g~~~~g~l~dr~--grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 315 (421)
.++.-.+ +++|++++||++||+ |||...-..+...+...++..+ .. +. . .......+.+.+.++..|+
T Consensus 294 ~~lfE~a-gl~G~Ll~GwlSDklfkgrR~p~~~i~~~~i~~~~~~~w--~~-~~----~--~~~l~~~~l~~iGf~IyGP 363 (448)
T COG2271 294 ISLFEVA-GLPGTLLAGWLSDKLFKGRRGPMALIFMLLITASLVLYW--LA-PN----G--SYLLDAILLFIIGFLIYGP 363 (448)
T ss_pred HHHHHHH-hhHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHH--cC-CC----c--cHHHHHHHHHHHHHHHhhH
Confidence 6665544 799999999999997 5665543222221111111111 11 11 1 1222333333344555666
Q ss_pred ccccceeccccCccchhhhhhHHHHHHHHH-HHHHHHHHhHHHHHHcCcchhhHHHHHHHHHHHHHHHhhcc
Q 014616 316 GPVPWTLNSEVYPEQYRGICGGMSATVNWI-SNLIVAQTFLTVAELVGTGATFLILAGIAVLAVVFVILFVP 386 (421)
Q Consensus 316 ~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 386 (421)
..+.-..+.|..|++.-|++.|+...++++ |+..+....+.+.|..||...|+++.+.++++.+.......
T Consensus 364 qmLiGl~a~e~~pK~AaGtA~Gf~Glf~Yl~Ga~~a~~~~g~i~d~~gW~g~Fi~~~~~a~l~~lll~~~~~ 435 (448)
T COG2271 364 QMLIGLAAAEFVPKKAAGTATGFVGLFAYLIGAALAGLPLGYIADTWGWDGGFIVLSIAALLAILLLLPVWN 435 (448)
T ss_pred HHHHHHHHhccccHhhccchhchhhhHHHHhhHHhcCCcceeeEecCCCcchHHHHHHHHHHHHHHHHHHHh
Confidence 666666778999999999999999999999 77777778888878889999999988888877665555443
|
|
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.3e-28 Score=232.42 Aligned_cols=355 Identities=20% Similarity=0.280 Sum_probs=232.8
Q ss_pred chhhhHHHHhhhhhhhcccchhHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHhhhhhhhhhHHHHHhhcCCCCCcc
Q 014616 2 ALVGAIVGAASGGWINDAYGRKKATLLADVVFTAGAIIMAAAPDPYVLILGRLLVGLGVGIASVTAPVYIAEASPSEVRG 81 (421)
Q Consensus 2 ~~ig~~~g~~~~g~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~s~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg 81 (421)
..++..+++++.|+++||+|||+++.++.+++++++.++++++|++.+++.|+++|++.+...+....++.|++|+|+|+
T Consensus 38 ~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~ 117 (399)
T TIGR00893 38 FSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFAGAYVSLYILRVLLGAAEAPFFPGIILIVASWFPASERA 117 (399)
T ss_pred HHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHHHH
Confidence 35778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhchHHHHHHHHHHHHHHHhhhcccCCccchHHHHhhHHHHHHHHHH-hhcCCcChHHHHhcCCHHHHHHHHHHhcChh
Q 014616 82 GLVSTNVLMITSGQFLSYLVNLAFTEVPGTWRWMLGVSAVPAIIQFVL-MLFMPESPRWLFMKSDKEKAILVLSKIYDIA 160 (421)
Q Consensus 82 ~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~Wr~~f~~~~~~~l~~~~~-~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~ 160 (421)
+..+........|..+++.++..+.... +||+.|++.++..++..+. ....||+|+.... .++++........
T Consensus 118 ~~~~~~~~~~~~g~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~---- 191 (399)
T TIGR00893 118 TAVSIFNSAQGLGGIIGGPLVGWILIHF-SWQWAFIIEGVLGIIWGVLWLKFIPDPPQKAKW-LTEEEKYIVVGGL---- 191 (399)
T ss_pred HHHHHHHHhchHHHHHHHHHHHHHHHhC-CchHHHHHHHHHHHHHHHHhhheecCCCCcccc-CCHHHHhhcchhh----
Confidence 9999999999999999988877655544 4999999888776665544 3445666532111 1111100000000
Q ss_pred hhHHHHHHHHHHHHHHHhhcccccHHHhhcchhHHHHHHHHHHHHHHHhhcCcceehhchHHHHH-HcCCCChHHHHHHH
Q 014616 161 RLEDEIDHLSAAAEEELRKKKTVRYLDVFKSKEIRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQ-MAGFQSNQLALLLS 239 (421)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~ 239 (421)
..+.++++.++++....++.+++|+++......... .........+.|.+.+ ..|.+..+.+....
T Consensus 192 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (399)
T TIGR00893 192 --------LAEQQGKGPSTPKKYQIKELLKDRRVWGLALGQFLV-----NIGLGFFLTWFPTYLVQERGLSILEAGFMAS 258 (399)
T ss_pred --------ccccccccccCCCccchHHHhcCHHHHHHHHHHHHH-----HhHHHHHHHHHHHHHHHHhcccHHHhhHHHH
Confidence 000000111112223456677888766544332211 1122223344565554 46776665555444
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCChhHHHH-hhHHHHHHHHHHHHHHhhCCCCCCCcchhHHHHHHHHHHHHHhhcccccc
Q 014616 240 LAVAGTNAVGTIVGIYLIDHFGRKKLALS-SLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLALYIAFFAPGMGPV 318 (421)
Q Consensus 240 ~~~~~~~~~g~~~~g~l~dr~grr~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 318 (421)
. .....+++.++.++++||++||+.... ......++.............. + ..+.... .....+...+..+.
T Consensus 259 ~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~~--~~~~~~~~~~~~~~ 331 (399)
T TIGR00893 259 L-PGIVGFIGMILGGRLSDLLLRRGKSLVFARKTAIIAGLVLSLLMFATNYV--N--IPYAALA--LVALGFFGLGAGAI 331 (399)
T ss_pred H-HHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHhccc--h--hHHHHHH--HHHHHHhchhhhhH
Confidence 4 444578999999999999999862111 1111111111111111111100 0 1111111 11122223335677
Q ss_pred cceeccccCccchhhhhhHHHHHHHHHHHHHHHHHhHHHHHHcC-cchhhHHHHHHHHHHHHHHH
Q 014616 319 PWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELVG-TGATFLILAGIAVLAVVFVI 382 (421)
Q Consensus 319 ~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~ 382 (421)
.+++..|.+|++.|+++.++.++...+++.+++.+.+.+.+..| +...+.+.+..+++..+..+
T Consensus 332 ~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 396 (399)
T TIGR00893 332 GWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVIGAIAATTGSFAGALMVVAALALIGALSYL 396 (399)
T ss_pred HHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhHHhhhhccCCCchhHHHHHHHHHHHHHHHHHH
Confidence 78889999999999999999999999999999999999988888 77777777777766655443
|
|
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.7e-27 Score=232.52 Aligned_cols=361 Identities=19% Similarity=0.230 Sum_probs=223.0
Q ss_pred chhhhHHHHhhhhhhhcccchhHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHhhhhhhhhhHHHHHhhcCCCCCcc
Q 014616 2 ALVGAIVGAASGGWINDAYGRKKATLLADVVFTAGAIIMAAAPDPYVLILGRLLVGLGVGIASVTAPVYIAEASPSEVRG 81 (421)
Q Consensus 2 ~~ig~~~g~~~~g~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~s~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg 81 (421)
..++++++.++.|+++||+|||+++.++.++.+++++++++++|++.+++.|+++|++.+...+....++.|++|+|+|+
T Consensus 64 ~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~ 143 (496)
T PRK03893 64 AFISRWFGGLLLGAMGDRYGRRLAMVISIVLFSVGTLACGFAPGYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRN 143 (496)
T ss_pred HHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHH
Confidence 35788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhchHHHHHHHHHHHHHHHhhhcccCCccchHHHHhhHHHHHHHHHHhhcCCcChHHHHhcCCHHHHHHHHHHhcChhh
Q 014616 82 GLVSTNVLMITSGQFLSYLVNLAFTEVPGTWRWMLGVSAVPAIIQFVLMLFMPESPRWLFMKSDKEKAILVLSKIYDIAR 161 (421)
Q Consensus 82 ~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~Wr~~f~~~~~~~l~~~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~ 161 (421)
+..+........|..+++.+...+.... +||+.|++.+++.++.+.....+||++++...+++++............+.
T Consensus 144 ~~~~~~~~~~~~g~~~~~~~~~~l~~~~-~w~~~f~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (496)
T PRK03893 144 KASGFLISGFSIGAVVAAQVYSLVVPVW-GWRALFFIGILPIIFALWLRKNLPEAEDWKEKHAGKAPVRTMVDILYRGEH 222 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccC-CHHHHHHHHHHHHHHHHHHHHhCCCchhhhhhccccccchhHHHHHhcchh
Confidence 9999988888999999888877665544 599999986665555555555678887654322211111000000000000
Q ss_pred hHHHHH-HHHH-HH-HHHHhhcccccH----------------HHhhcchhHHHHHHHHHHHHHHHhhcCcceehhchHH
Q 014616 162 LEDEID-HLSA-AA-EEELRKKKTVRY----------------LDVFKSKEIRLAFLAGAGLQAFQQFTGINTVMYYSPT 222 (421)
Q Consensus 162 ~~~~~~-~~~~-~~-~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (421)
...... .... .. ...........+ ....+.++.+..... ....+..+...+....+.|.
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~lp~ 300 (496)
T PRK03893 223 RIINILLTLAAAAALWFCFAGNLQNAAIVAVLGLLCAAIFISFMVQSSGKRWPTGVML--MVVVLFAFLYSWPIQALLPT 300 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHhcccchhHHHHH--HHHHHHHHhccchHHHHHHH
Confidence 000000 0000 00 000000000000 000000000000000 00011111111123345677
Q ss_pred HHH-HcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHhhHHHHHHHHHHHHHHhhCCCCCCCcchhHHHH
Q 014616 223 IVQ-MAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGWIAV 301 (421)
Q Consensus 223 ~~~-~~g~~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 301 (421)
+++ +.|++..+.+....... ...+++.+++|+++||++||+....+.....+....+.. .. . . ..+..
T Consensus 301 ~l~~~~g~~~~~~g~~~~~~~-~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~---~~--~---~-~~~~~- 369 (496)
T PRK03893 301 YLKTDLGYDPHTVANVLFFSG-FGAAVGCCVGGFLGDWLGTRKAYVCSLLISQLLIIPVFA---IG--G---A-NVWVL- 369 (496)
T ss_pred HHHhhcCCCHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhh---cc--c---c-HHHHH-
Confidence 774 77888877776665544 457899999999999999998866544332222211111 10 0 0 11111
Q ss_pred HHHHHHHHHhhcccccccceeccccCccchhhhhhHHHHHHHHHHHHHHHHHhHHHHHHcCcchhhHHHHHHHHH
Q 014616 302 IGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELVGTGATFLILAGIAVL 376 (421)
Q Consensus 302 ~~~~~~~~~~~~g~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 376 (421)
....+.......+..+...++..|.+|++.|+++.++.++...+++.+++.+.+.+.+..|+...+...++.+.+
T Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~lgp~l~g~l~~~~g~~~~~~~~~~~~~~ 444 (496)
T PRK03893 370 GLLLFFQQMLGQGISGLLPKLIGGYFDTEQRAAGLGFTYNVGALGGALAPILGALIAQRLDLGTALASLSFSLTF 444 (496)
T ss_pred HHHHHHHHHHhcccchhhHHHHHhhCCHHHhhcccchhhhhhhHHHHHHHHHHHHHhccCChHHHHHHHHHHHHH
Confidence 111111112222334455567789999999999999999999999999999999999988877666555544433
|
|
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.8e-27 Score=232.59 Aligned_cols=342 Identities=14% Similarity=0.126 Sum_probs=219.6
Q ss_pred chhhhHHHHhhhhhhhcccchhHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHhhhhhhhhhHHHHHhhcC-CCCCc
Q 014616 2 ALVGAIVGAASGGWINDAYGRKKATLLADVVFTAGAIIMAAAPDPYVLILGRLLVGLGVGIASVTAPVYIAEAS-PSEVR 80 (421)
Q Consensus 2 ~~ig~~~g~~~~g~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~s~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~-p~~~r 80 (421)
+.++..++++++|+++||+|||+++.++.+++.++++.+++++|++.++++|+++|+|.+...+.....+.+++ |+++|
T Consensus 50 ~~l~~~~~~~~~G~l~D~~Grk~~l~~~~~~~~~~~~~~~~a~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r 129 (495)
T PRK14995 50 YSLVMAGMVLPMGALGDRIGFKRLLMLGGTLFGLASLAAAFSPTASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQR 129 (495)
T ss_pred HHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 46778889999999999999999999999999999999999999999999999999999999988888787765 67899
Q ss_pred cchhchHHHHHHHHHHHHHHHhhhcccCCccchHHHHhhHHHHHHHHHH-hhcCCcChHHHHhcCCHHHHHHHH----HH
Q 014616 81 GGLVSTNVLMITSGQFLSYLVNLAFTEVPGTWRWMLGVSAVPAIIQFVL-MLFMPESPRWLFMKSDKEKAILVL----SK 155 (421)
Q Consensus 81 g~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~Wr~~f~~~~~~~l~~~~~-~~~~~esp~~~~~~~~~~~~~~~~----~~ 155 (421)
+++.+........|..+|+.++..+.+.. +|||.|++..+..++.++. ..++||+|.....+.|........ ..
T Consensus 130 ~~~~g~~~~~~~~g~~~gp~lgg~l~~~~-gwr~~f~i~~~~~~~~~~l~~~~l~~~~~~~~~~~d~~g~~~~~~~~~~l 208 (495)
T PRK14995 130 NMALGVWAAVGSGGAAFGPLVGGILLEHF-YWGSVFLINVPIVLVVMGLTARYVPRQAGRRDQPLNLGHALMLIVAILLL 208 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccC-ChHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCChHhHHHHHHHHHHH
Confidence 99999999999999999999998887765 4999999988766665443 456787654211111211111000 00
Q ss_pred hcChhhh-----HH-HHH--------HHHHHHHHHHhhcccccHHHhhcchhHHHHHHHHHHHHHHHhhcCcceehhchH
Q 014616 156 IYDIARL-----ED-EID--------HLSAAAEEELRKKKTVRYLDVFKSKEIRLAFLAGAGLQAFQQFTGINTVMYYSP 221 (421)
Q Consensus 156 ~~~~~~~-----~~-~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (421)
....... .. ... ........+.+.+++....+++|++.+.......... ...+....++.|
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~f~~~e~~~~~p~~~~~lf~~~~~~~~~~~~~~~-----~~~~~~~~~~~~ 283 (495)
T PRK14995 209 VYSAKTALKGFLSLWVTSLTLLTGALLLGLFIRTQLAASRPMIDMRLFTHRIILSGVVMAMTA-----MITLVGFELLMA 283 (495)
T ss_pred HHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhcCCCCCcCHHHhCCcccHHHHHHHHHH-----HHHHHHHHHHHH
Confidence 0000000 00 000 0000011122223333345788888766544332211 112223334567
Q ss_pred HHHHH-cCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHhhHHHHHHHHHHHHHHhhCCCCCCCcchhHHH
Q 014616 222 TIVQM-AGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGWIA 300 (421)
Q Consensus 222 ~~~~~-~g~~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 300 (421)
.++|. .|.+..+.+.. ..+......++.++.|++.||+++|+....+.....++...+... ..... . +..
T Consensus 284 ~~lq~v~g~s~~~ag~~-~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~g~~~~~~~~~~l~~~---~~~~~--~---~~~ 354 (495)
T PRK14995 284 QELQFVHGLSPLEAGMF-MLPVMVASGFSGPIAGILVSRLGLRLVATGGMALSALSFYGLAMT---DFSTQ--Q---WQA 354 (495)
T ss_pred HHHHHHcCCCHHHHHHH-HHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHh---cCCCc--h---HHH
Confidence 77665 67776665554 455556678899999999999999887766555544444333221 11111 1 111
Q ss_pred HHHHHHHHHHhhcccccccceeccccCccchhhhhhHHHHHHHHHHHHHHHHHhHHHHH
Q 014616 301 VIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAE 359 (421)
Q Consensus 301 ~~~~~~~~~~~~~g~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~ 359 (421)
.....+ ..+......+.......+..|++.++.+.++.++...+|+.+++.+.+.+.+
T Consensus 355 ~~~~~l-~G~g~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lG~~~G~ai~g~i~~ 412 (495)
T PRK14995 355 WGLMAL-LGFSAASALLASTSAIMAAAPPEKAAAAGAIETMAYELGAGLGIAIFGLLLS 412 (495)
T ss_pred HHHHHH-HHHhHHHHHHHHHHHHHhcCCHHhcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111111 1111111223334556788899999999999999999998888777666543
|
|
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.4e-27 Score=230.68 Aligned_cols=354 Identities=16% Similarity=0.186 Sum_probs=218.0
Q ss_pred chhhhHHHHhhhhhhhcccchhHHHHHHHHHHHHHHHHHHhcC----ChhHHHHHHHHHHhhhhhhhhhHHHHHhhcCCC
Q 014616 2 ALVGAIVGAASGGWINDAYGRKKATLLADVVFTAGAIIMAAAP----DPYVLILGRLLVGLGVGIASVTAPVYIAEASPS 77 (421)
Q Consensus 2 ~~ig~~~g~~~~g~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~----s~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~ 77 (421)
..+++.+++++.|+++||+|||+++..+.++++++++++++++ ++..+++.|+++|++.|...+.....+.|++|+
T Consensus 72 ~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~ 151 (452)
T PRK11273 72 ISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQ 151 (452)
T ss_pred HHHHHHHHHhhhhhhhhccCCchhHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHHhccchHHHHHHHHhCCh
Confidence 4678999999999999999999999999999999999888763 678889999999999999888888889999999
Q ss_pred CCccchhchHHHHHHHHH-HHHHHHhhhcccCCccchHHHHhhHHHHHHH-HHHhhcCCcChHHHHhcCCHHHHHHHHHH
Q 014616 78 EVRGGLVSTNVLMITSGQ-FLSYLVNLAFTEVPGTWRWMLGVSAVPAIIQ-FVLMLFMPESPRWLFMKSDKEKAILVLSK 155 (421)
Q Consensus 78 ~~rg~~~~~~~~~~~~g~-~l~~~~~~~~~~~~~~Wr~~f~~~~~~~l~~-~~~~~~~~esp~~~~~~~~~~~~~~~~~~ 155 (421)
++|++.++.......+|. +.+++....... ..+||+.|++.+++.++. ++..+++||+|+....+++++...+
T Consensus 152 ~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~-~~gw~~~f~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~---- 226 (452)
T PRK11273 152 KERGGIVSVWNCAHNVGGGLPPLLFLLGMAW-FNDWHAALYMPAFAAILVALFAFAMMRDTPQSCGLPPIEEYKND---- 226 (452)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH-hccHHHHHHHHHHHHHHHHHHHHHHccCCHhhcCCCChhhhhhc----
Confidence 999999998877777765 345543322222 236999999988766654 4445677888764321111110000
Q ss_pred hcChhhhHHHHHHHHHHHHHHHhhccc-cc--HHHhhcchhHHHHHHHHHHHHHHHhhcCcceehhchHHHHHH-cCCCC
Q 014616 156 IYDIARLEDEIDHLSAAAEEELRKKKT-VR--YLDVFKSKEIRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQM-AGFQS 231 (421)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~ 231 (421)
.. ++. +.+.+++++ .. ....+|++.++...+....... ..+....+.|.++++ .|++.
T Consensus 227 ------~~---~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~~~~~P~~l~~~~g~s~ 288 (452)
T PRK11273 227 ------YP---DDY----NEKHEQELTAKQIFMQYVLPNKLLWYIAIANVFVYL-----LRYGILDWSPTYLKEVKHFAL 288 (452)
T ss_pred ------cc---ccc----ccccCCCccHHHHHHHHHHcChHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHhcCCCH
Confidence 00 000 000000000 00 1235677776654433222111 112233466777765 67876
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhc--CChhHHHHhh-HHHHHHHHHHHHHHhhCCCCCCCcchhHHHHHHHHHHH
Q 014616 232 NQLALLLSLAVAGTNAVGTIVGIYLIDHF--GRKKLALSSL-AGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLALYI 308 (421)
Q Consensus 232 ~~~~~~~~~~~~~~~~~g~~~~g~l~dr~--grr~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (421)
.+.+.... ......+++.+++|+++||+ +||+...... ....++...+ + . ....+ . +........ .
T Consensus 289 ~~~~~~~~-~~~~~~~~g~~~~G~l~dr~~~~r~~~~~~~~~~l~~~~~~~~-~-~--~~~~~----~-~~~~~~~~~-~ 357 (452)
T PRK11273 289 DKSSWAYF-LYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVY-W-L--NPAGN----P-TVDMACMIV-I 357 (452)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHHH-H-H--hcccC----h-HHHHHHHHH-H
Confidence 66555544 34445678999999999999 4444322111 1111111111 1 1 11110 0 111111111 1
Q ss_pred HHhhcccccccceeccccCccchhhhhhHHHHHHHHHHHHH-HHHHhHHHHHHcCcchhhHHHHHHHHHHHHHHHh-hcc
Q 014616 309 AFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLI-VAQTFLTVAELVGTGATFLILAGIAVLAVVFVIL-FVP 386 (421)
Q Consensus 309 ~~~~~g~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~ 386 (421)
.....+.......+..|.+|++.||++.|+.+...++++.+ ++.+.+.+.++.|++..|.+.+..++++.+.... ..+
T Consensus 358 g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~g~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~ 437 (452)
T PRK11273 358 GFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIG 437 (452)
T ss_pred HHHHHhHHHHHHHHHHHHcChhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhcc
Confidence 11111211222345679999999999999999988888765 6888899999999988888888877776554443 334
Q ss_pred CCC
Q 014616 387 ETQ 389 (421)
Q Consensus 387 et~ 389 (421)
|+|
T Consensus 438 ~~~ 440 (452)
T PRK11273 438 EKR 440 (452)
T ss_pred ccc
Confidence 443
|
|
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.3e-27 Score=227.02 Aligned_cols=327 Identities=17% Similarity=0.151 Sum_probs=217.9
Q ss_pred chhhhHHHHhhhhhhhcccchhHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHhhhhhhhhhHHHHHhhcCCCCCcc
Q 014616 2 ALVGAIVGAASGGWINDAYGRKKATLLADVVFTAGAIIMAAAPDPYVLILGRLLVGLGVGIASVTAPVYIAEASPSEVRG 81 (421)
Q Consensus 2 ~~ig~~~g~~~~g~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~s~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg 81 (421)
..++..+++++.|+++||+|||+++..+.++.+++++.+++++|++.+++.|+++|++.+...+.....+.|++| |+|+
T Consensus 47 ~~~~~~~~~~~~G~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~ 125 (377)
T TIGR00890 47 LLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGLGFTFYAIADSLAALYLTYGLASAGVGIAYGIALNTAVKWFP-DKRG 125 (377)
T ss_pred HHHHHHHHhhhhHHHHHHcCccchhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHcC-cccH
Confidence 467899999999999999999999999999999999999999999999999999999999988888888999987 5799
Q ss_pred chhchHHHHHHHHHHHHHHHhhhcccCCccchHHHHhhHHHHHHHHHHh-hcCCcChHHHHhcCCHHHHHHHHHHhcChh
Q 014616 82 GLVSTNVLMITSGQFLSYLVNLAFTEVPGTWRWMLGVSAVPAIIQFVLM-LFMPESPRWLFMKSDKEKAILVLSKIYDIA 160 (421)
Q Consensus 82 ~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~Wr~~f~~~~~~~l~~~~~~-~~~~esp~~~~~~~~~~~~~~~~~~~~~~~ 160 (421)
++.+........|..+++.+........ +||+.|++.++..++..+.. .+++|+|+... +++.+
T Consensus 126 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~------------- 190 (377)
T TIGR00890 126 LASGIIIGGYGLGSFILSPLITSVINLE-GVPAAFIYMGIIFLLVIVLGAFLIGYPPGQLI-KTNIE------------- 190 (377)
T ss_pred HHHHHHHHhcchhHhHHHHHHHHHHhcc-cHHHHHHHHHHHHHHHHHHHHHheecCchhcc-ccCcc-------------
Confidence 9988888887777765444333333333 59999999887776655443 44454432100 00000
Q ss_pred hhHHHHHHHHHHHHHHHhhcccccHHHhhcchhHHHHHHHHHHHHHHHhhcCcceehhchHHHHHHcCCCChHHHHHHHH
Q 014616 161 RLEDEIDHLSAAAEEELRKKKTVRYLDVFKSKEIRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQMAGFQSNQLALLLSL 240 (421)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 240 (421)
..++..+.++.++++..+......... .+ .......+.+.+.++.+.+..+.+.....
T Consensus 191 -----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (377)
T TIGR00890 191 -----------------VSVKDYTVWEMLRTPQFWVLYLSFFLN-AV----SGLLLIGLYKPYGQSLGLSDGFLVLAVSI 248 (377)
T ss_pred -----------------cchhhhhHHHHHcCccHHHHHHHHHHH-hH----HHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 000001233456666655433221111 11 11111123344556677766555554444
Q ss_pred HHHHHHHHHHHHHHHHHhhcCChhHHHHhhHHHHHHHHHHHHHHhhCCCCCCCcchhHHHHHHHHHHHHHhhcccccccc
Q 014616 241 AVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLALYIAFFAPGMGPVPW 320 (421)
Q Consensus 241 ~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 320 (421)
......++.++.|++.||++||+.+..+.....++...+... .. . ........... ..+......+...
T Consensus 249 -~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~---~~---~---~~~~~~~~~~~-~g~~~g~~~~~~~ 317 (377)
T TIGR00890 249 -SSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLFI---PM---L---NDVLFLATVAL-VFFTWGGTISLFP 317 (377)
T ss_pred -HHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHc---cc---c---hhHHHHHHHHH-HHHHhccchhccH
Confidence 444578899999999999999988766555544444333221 10 0 11111111111 1112222334445
Q ss_pred eeccccCccchhhhhhHHHHHHHHHHHHHHHHHhHHHHHHcCcchhhHHHHHHHHHH
Q 014616 321 TLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELVGTGATFLILAGIAVLA 377 (421)
Q Consensus 321 ~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 377 (421)
++..|.+|+++|++..|+.+....+++.+++...+.+.+..|+...|.+.+++++++
T Consensus 318 ~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f~~~~~~~~~~ 374 (377)
T TIGR00890 318 SLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALTEIGFEYTFIVTGAFALTS 374 (377)
T ss_pred HHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHh
Confidence 677899999999999999999999999999999999998889888888777766654
|
|
| >KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.5e-28 Score=232.41 Aligned_cols=350 Identities=22% Similarity=0.308 Sum_probs=248.9
Q ss_pred chhhhHHHHhhhhhhhcccchhHHHHHHHHHHHHHHHHHHhcC--ChhHHHHHHHHHHhhhhhhhhhHHHHHhhcCCCCC
Q 014616 2 ALVGAIVGAASGGWINDAYGRKKATLLADVVFTAGAIIMAAAP--DPYVLILGRLLVGLGVGIASVTAPVYIAEASPSEV 79 (421)
Q Consensus 2 ~~ig~~~g~~~~g~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~--s~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~ 79 (421)
+..|++++++++|+++||+|-|+++.++.++.++++++.-.+. +++.+++.|++||++.|..+|+...+.++|.|++|
T Consensus 82 ~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~~~~~~~~~R~lqGl~~g~~~pa~~~i~~~W~P~~E 161 (466)
T KOG2532|consen 82 FFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASIGFYLLLVLRFLQGLGQGVLFPAIGSILAKWAPPNE 161 (466)
T ss_pred HHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHhHHHHhHHHhhhhceeeeECCHHH
Confidence 4689999999999999999999999999999999999986543 55688999999999999999999999999999999
Q ss_pred ccchhchHHHHHHHHHHHHHHHhhhcccCCccchHHHHhhHHHHHHHHHHhh-cCCcChHHHHhcCCHHHHHHHHHHhcC
Q 014616 80 RGGLVSTNVLMITSGQFLSYLVNLAFTEVPGTWRWMLGVSAVPAIIQFVLML-FMPESPRWLFMKSDKEKAILVLSKIYD 158 (421)
Q Consensus 80 rg~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~Wr~~f~~~~~~~l~~~~~~~-~~~esp~~~~~~~~~~~~~~~~~~~~~ 158 (421)
|++..+....+...|.+++.++++.+.....||+++||+.+..+++..++++ +..|+|..+..-.++|++.
T Consensus 162 rs~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~~~~d~P~~h~~is~~El~~-------- 233 (466)
T KOG2532|consen 162 RSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFILWFLFYSDSPSKHPNISEKELKY-------- 233 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCHHHHHH--------
Confidence 9999999998999999999888888877755799999999999988877764 5678887654333333321
Q ss_pred hhhhHHHHHHHHHHHHHH-HhhcccccHHHhhcchhHHHHHHHHHHHHHHHhhcCcceehhchHHHHH-HcCCCChHHHH
Q 014616 159 IARLEDEIDHLSAAAEEE-LRKKKTVRYLDVFKSKEIRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQ-MAGFQSNQLAL 236 (421)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~ 236 (421)
+.+.+.++ .+++++.+|+++++++.+|..++..+ ...++++....|.|.|++ ..|++..+.+.
T Consensus 234 ----------I~~~k~~~~~~~~~~vP~~~i~ts~~vwai~~~~f-----~~~~~~~~l~~y~PtY~~~VL~f~v~~~G~ 298 (466)
T KOG2532|consen 234 ----------IEKGKSEAHVKKKPPVPYKAILTSPPVWAIWISAF-----GGNWGFYLLLTYLPTYLKEVLGFDVRETGF 298 (466)
T ss_pred ----------HHhcccccccCCCCCCCHHHHHcCHHHHHHHHHHH-----HHHHHHHHHHHHhhHHHHHHhCCChhhhhH
Confidence 11111111 11124678999999999988766543 333445555667888886 57999999998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCChh-------HHHHhhHHHHHHHHHHHHHHhhCCCCCCCcchhHHHHHHHHHHHH
Q 014616 237 LLSLAVAGTNAVGTIVGIYLIDHFGRKK-------LALSSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLALYIA 309 (421)
Q Consensus 237 ~~~~~~~~~~~~g~~~~g~l~dr~grr~-------~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (421)
+..+|... ..+..+++|+++||+.+|. -..-+......+..++...+.... ..+..+..+.+...
T Consensus 299 ~salP~l~-~~~~k~~~g~lsD~l~~~~ls~t~~rkifn~i~~~~~ai~l~~l~~~~~~-------~~~~a~~~l~~~~~ 370 (466)
T KOG2532|consen 299 LSALPFLA-MAIVKFVAGQLSDRLTFRILSETTVRKIFNTIAFGGPAVFLLVLAFTSDE-------HRLLAVILLTIAIG 370 (466)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHhhccCchHhHHHHHHhHHHHHHHHHHHeeeecCCC-------cchHHHHHHHHHHH
Confidence 88888876 7889999999999986631 111112222222222222211111 11223332222222
Q ss_pred HhhcccccccceeccccCccchhhhhhHHHHHHHHHHHHHHHHHhHHHHH---HcCcchhhHHHHHHHHHHHHHHHhh
Q 014616 310 FFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAE---LVGTGATFLILAGIAVLAVVFVILF 384 (421)
Q Consensus 310 ~~~~g~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~---~~g~~~~~~~~~~~~~~~~~~~~~~ 384 (421)
..|..............+++-+...|+.+....+.++++|.+.+.+.+ ..+|+..|++.+++.++..+++.++
T Consensus 371 --~~g~~~~Gf~~~~~~~apq~a~~l~g~~~~~~~~~~~~~P~~vg~~~~~~t~~eW~~VF~i~a~i~~~~~i~f~~f 446 (466)
T KOG2532|consen 371 --LSGFNISGFYKNHQDIAPQHAGFVMGIINFVGALAGFIAPLLVGIIVTDNTREEWRIVFLIAAGILIVGNIIFLFF 446 (466)
T ss_pred --HcccchhhhHhhhhhccchHHHHHHHHHHHHHHHHHHHHHHheeeEeCCCCHHHHHHHHHHHHHHHHHhchheeEe
Confidence 122222222233333245667888999999999999999988877663 3468889999999998887666555
|
|
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.2e-27 Score=223.66 Aligned_cols=323 Identities=21% Similarity=0.201 Sum_probs=208.0
Q ss_pred hhhHHHHhhhhhhhcccchhHHHHHHHHHHHHHHHHHHhcCChh--------HHHHHHHHHHhhhhhhhhhHHHHHhhcC
Q 014616 4 VGAIVGAASGGWINDAYGRKKATLLADVVFTAGAIIMAAAPDPY--------VLILGRLLVGLGVGIASVTAPVYIAEAS 75 (421)
Q Consensus 4 ig~~~g~~~~g~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~s~~--------~l~~~R~l~G~g~g~~~~~~~~~i~e~~ 75 (421)
++..+|+++.|+++||+|||+++..+.++..+++.++++++++. .+++.|+++|++.+...+....++.|+.
T Consensus 46 ~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~ 125 (394)
T TIGR00883 46 LARPLGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLIGLLPSYATIGIWAPILLLLARLIQGFSLGGEWGGAALYLAEYA 125 (394)
T ss_pred HHhhhHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhCCChhhhHHHHHHHHHHHHHHHHhhccccccccHHHhhhcC
Confidence 44567899999999999999999999999999999999999975 4889999999999999999999999999
Q ss_pred CCCCccchhchHHHHHHHHHHHHHHHhhhccc-------CCccchHHHHhhHHHHHHHHHHhhcCCcChHHHHhcCCHHH
Q 014616 76 PSEVRGGLVSTNVLMITSGQFLSYLVNLAFTE-------VPGTWRWMLGVSAVPAIIQFVLMLFMPESPRWLFMKSDKEK 148 (421)
Q Consensus 76 p~~~rg~~~~~~~~~~~~g~~l~~~~~~~~~~-------~~~~Wr~~f~~~~~~~l~~~~~~~~~~esp~~~~~~~~~~~ 148 (421)
|+++|+...+........|..+++.++..... ...+||+.|++.++..++........||+|++...++
T Consensus 126 ~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 201 (394)
T TIGR00883 126 PPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDDALLEWGWRIPFLVSAVLVLIGLYLRRNLEETPVFEKAQE---- 201 (394)
T ss_pred CcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhhccchHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHh----
Confidence 99999999998888888888888776544321 1235999999887766665555556677764321100
Q ss_pred HHHHHHHhcChhhhHHHHHHHHHHHHHHHhhcccccHHHhhcchh--HHHHHHHHHHHHHHHhhcCcceehhchHHHH-H
Q 014616 149 AILVLSKIYDIARLEDEIDHLSAAAEEELRKKKTVRYLDVFKSKE--IRLAFLAGAGLQAFQQFTGINTVMYYSPTIV-Q 225 (421)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 225 (421)
.+++...+..+.+++++ ++...... +...........+.|.+. +
T Consensus 202 ----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~ 248 (394)
T TIGR00883 202 ----------------------------KHKKKRGPIRETLTKHRKPFLLGLGLV-----IATTTTFYLITTYLPTYLTQ 248 (394)
T ss_pred ----------------------------ccccccCCHHHHHHhchHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHH
Confidence 00111123344555543 22221111 111111222334556666 4
Q ss_pred HcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHhhHHHHHHHHHHHHHHhhCCCCCCCcchhHHHHHHHH
Q 014616 226 MAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLA 305 (421)
Q Consensus 226 ~~g~~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (421)
+.|.+..+.+..... ......++.++.|+++||++||+..........+......... .... .. +.......
T Consensus 249 ~~g~~~~~~~~~~~~-~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~----~~--~~~~~~~~ 320 (394)
T TIGR00883 249 TLGLSANSALLVLML-SLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLMAL-LDSG----SF--TLFFFLVL 320 (394)
T ss_pred hcCCChhHHHHHHHH-HHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHH-hcCC----ch--HHHHHHHH
Confidence 567776665554444 4445788899999999999999876543332222221111111 1111 11 11111111
Q ss_pred HHHHHhhcccccccceeccccCccchhhhhhHHHH-HHHHHHHHHHHHHhHHHHHHcC-cchhhHHHHH
Q 014616 306 LYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSA-TVNWISNLIVAQTFLTVAELVG-TGATFLILAG 372 (421)
Q Consensus 306 ~~~~~~~~g~~~~~~~~~~e~~p~~~r~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~ 372 (421)
.. .+......+..+++..|.+|++.|+++.++.+ ..+.+++.++|.+.+.+.+..| +...++....
T Consensus 321 ~~-g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~g~~~~~~~~~~~ 388 (394)
T TIGR00883 321 GL-ALIGGMYTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAMTGDWYAIGYYLAA 388 (394)
T ss_pred HH-HHHHHHHhhhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHHHHcCcchhHHHHHHH
Confidence 11 11112233555678899999999999888754 4456788788989998888887 5444444443
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.6e-27 Score=229.73 Aligned_cols=345 Identities=19% Similarity=0.182 Sum_probs=236.0
Q ss_pred chhhhHHHHhhhhhhhcccchhHHHHHHHHHHHHHHHHHHh-----cCChhHHHHHHHHHHhhhhhhhhhHHHHHhhcCC
Q 014616 2 ALVGAIVGAASGGWINDAYGRKKATLLADVVFTAGAIIMAA-----APDPYVLILGRLLVGLGVGIASVTAPVYIAEASP 76 (421)
Q Consensus 2 ~~ig~~~g~~~~g~l~dr~Grr~~~~~~~~l~~i~~~~~~~-----~~s~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p 76 (421)
..++..+++++.|+++||+|||+++..+.++.+++....+. .++++.+++.|+++|++.+...+...+++.|+.|
T Consensus 61 ~~l~~~~~~~~~G~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~ 140 (417)
T PRK10489 61 TGGAMFIGLMVGGVLADRYDRKKLILLARGTCGLGFIGLALNAFLPEPSLLAIYLLGLWDGFFGSLGVTALLAATPALVG 140 (417)
T ss_pred HHHHHHHHHHhhHHHhhhcCCceEEEehHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhccC
Confidence 35788899999999999999999999888888777665542 5678889999999999999888888999999999
Q ss_pred CCCccchhchHHHHHHHHHHHHHHHhhhcccCCccchHHHHhhHHHHHHHHHHhhcCCcChHHHHhcCCHHHHHHHHHHh
Q 014616 77 SEVRGGLVSTNVLMITSGQFLSYLVNLAFTEVPGTWRWMLGVSAVPAIIQFVLMLFMPESPRWLFMKSDKEKAILVLSKI 156 (421)
Q Consensus 77 ~~~rg~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~Wr~~f~~~~~~~l~~~~~~~~~~esp~~~~~~~~~~~~~~~~~~~ 156 (421)
+++|++..+........|..+++.++..+.... +|||.|++.++..++..+....+||+++.. +++++
T Consensus 141 ~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~-------- 208 (417)
T PRK10489 141 RENLMQAGAITMLTVRLGSVISPALGGLLIAAG-GVAWNYGLAAAGTFITLLPLLRLPALPPPP---QPREH-------- 208 (417)
T ss_pred HHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHHHhCCCCCCCC---ccccc--------
Confidence 999999999888888888888888877655433 599999988776666666666677764321 00000
Q ss_pred cChhhhHHHHHHHHHHHHHHHhhcccccHHHhhcchhHHHHHHHHHHHHHHHhhcCcceehhchHHHHHH-cCCCChHHH
Q 014616 157 YDIARLEDEIDHLSAAAEEELRKKKTVRYLDVFKSKEIRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQM-AGFQSNQLA 235 (421)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~ 235 (421)
+.++ . ...++..+++|.++...+..... .. . .....+.|.+.++ .|.+....+
T Consensus 209 --------~~~~--------~----~~~~~~~~~~~~~~~~~~~~~~~-~~--~---~~~~~~~p~~~~~~~g~~~~~~g 262 (417)
T PRK10489 209 --------PLRS--------L----LAGFRFLLASPVVGGIALLGGLL-TM--A---SAVRVLYPALADEVWQMGAAQIG 262 (417)
T ss_pred --------chHH--------H----HHHHHHHHcChHHHHHHHHHHHH-HH--H---HhHHHhhHHHHHhccCCChhHhH
Confidence 0000 0 01123455666655443332211 11 1 1122345666665 788776666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHhhHHHHHHHHHHHHHHhhCCCCCCCcchhHHHHHHHHHHHHHhhccc
Q 014616 236 LLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLALYIAFFAPGM 315 (421)
Q Consensus 236 ~~~~~~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 315 (421)
...... ..+.+++.++.+++.||.++++.+..+..+..++.+.+.. . . . .+.......++. +.....
T Consensus 263 ~~~~~~-~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~-----~-~---~--~~~~~~~~~~~g-~~~~~~ 329 (417)
T PRK10489 263 LLYAAV-PLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLFGL-----M-P---M--WILAVLCLALFG-YLSAIS 329 (417)
T ss_pred HHHHHH-HHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHHc-----c-c---h--HHHHHHHHHHHH-HHHHHH
Confidence 655544 3447888999999999977776655544443333332211 0 0 0 111112221111 111112
Q ss_pred ccccceeccccCccchhhhhhHHHHHHHHHHHHHHHHHhHHHHHHcCcchhhHHHHHHHHHHHHHHHhhccCCCCCCHHH
Q 014616 316 GPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELVGTGATFLILAGIAVLAVVFVILFVPETQGLTFLE 395 (421)
Q Consensus 316 ~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~et~~~~~~~ 395 (421)
.+..++...|..|++.|+++.|+.++...++..+++.+.+.+.+..|....+.+.+...++..++.+...||+|++++||
T Consensus 330 ~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (417)
T PRK10489 330 SLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAMMTPVASASASGFGLLIIGVLLLLVLGELRRFRQTP 409 (417)
T ss_pred HHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHhccccccccccc
Confidence 24445677899999999999999999999999999999999999988888888888887777777777889999888766
Q ss_pred HH
Q 014616 396 VE 397 (421)
Q Consensus 396 ~~ 397 (421)
.|
T Consensus 410 ~~ 411 (417)
T PRK10489 410 PE 411 (417)
T ss_pred cc
Confidence 55
|
|
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.4e-27 Score=233.46 Aligned_cols=349 Identities=19% Similarity=0.203 Sum_probs=225.1
Q ss_pred chhhhHHHHhhhhhhhcccchhHHHHHHHHHHHHHHHHHHh--cCChhHHHHHHHHHHhhhhhhhhhHHHHHhhcCCCCC
Q 014616 2 ALVGAIVGAASGGWINDAYGRKKATLLADVVFTAGAIIMAA--APDPYVLILGRLLVGLGVGIASVTAPVYIAEASPSEV 79 (421)
Q Consensus 2 ~~ig~~~g~~~~g~l~dr~Grr~~~~~~~~l~~i~~~~~~~--~~s~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~ 79 (421)
..+|+++++++.|+++||+|||+++..+.++++++++++.+ ..++..+++.|+++|++.+...+....+++|++|+++
T Consensus 85 ~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~~~ 164 (465)
T TIGR00894 85 HFYGQIIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGGGIALVVFCRVIQGLAQGSVSPATHKIIVKWAPPKE 164 (465)
T ss_pred HHHHHHHHHcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHhcccchhhHHHHHHhcCCHHH
Confidence 45789999999999999999999999999999999988754 4668889999999999999999999999999999999
Q ss_pred ccchhchHHHHHHHHHHHHHHHhhhcccCCccchHHHHhhHHHHHHHHHHhh-cCCcChHHHHhcCCHHHHHHHHHHhcC
Q 014616 80 RGGLVSTNVLMITSGQFLSYLVNLAFTEVPGTWRWMLGVSAVPAIIQFVLML-FMPESPRWLFMKSDKEKAILVLSKIYD 158 (421)
Q Consensus 80 rg~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~Wr~~f~~~~~~~l~~~~~~~-~~~esp~~~~~~~~~~~~~~~~~~~~~ 158 (421)
|+++.+....+..+|..+++++...+.....+||+.|++.++.+++..+.++ +.+|+|+......++|+.
T Consensus 165 r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~--------- 235 (465)
T TIGR00894 165 RSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMIFYVFGIVGCAWSLLWFVFPADDPSIHPCISKFEKK--------- 235 (465)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeehhhhhHHHHHHHHHHHHHhcCCcccCCCCCHHHHH---------
Confidence 9999999999999999999888776655433699999999887777665544 457777532211111110
Q ss_pred hhhhHHHHHHHHHHHHHHH-hhcccccHHHhhcchhHHHHHHHHHHHHHHHhhcCcceehhchHHHHH-HcCCCChHHHH
Q 014616 159 IARLEDEIDHLSAAAEEEL-RKKKTVRYLDVFKSKEIRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQ-MAGFQSNQLAL 236 (421)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~ 236 (421)
...+..+++. +.+++.++++.++++.++........ .....+....+.|.+++ ..|.+..+.+.
T Consensus 236 ---------~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~lp~~l~~~~g~s~~~~g~ 301 (465)
T TIGR00894 236 ---------YINSSLQGQKGSTRQSLPIKAIPKSLPVWAIWFAIFG-----HFWLYTILPTYLPTFISWVLRVSGKENGL 301 (465)
T ss_pred ---------HHHhhcccccCCCCCCCCHHHHhcCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHhCcChHHhHH
Confidence 0000000000 11123457788888887665443322 22223334456677765 56888777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCChhHHH---HhhHHHHHHHH---HHHHHHhhCCCCCCCcchhHHHHHHHHHHHHH
Q 014616 237 LLSLAVAGTNAVGTIVGIYLIDHFGRKKLAL---SSLAGVIISLV---LLSWAFISGSSASSSGVYGWIAVIGLALYIAF 310 (421)
Q Consensus 237 ~~~~~~~~~~~~g~~~~g~l~dr~grr~~~~---~~~~~~~~~~~---~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (421)
....+..+ ..++.+++|+++||.++|+... .......++.. ........... .. +..+..+.+...
T Consensus 302 ~~~~~~~~-~~i~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~--~~~~~~~~l~~~- 373 (465)
T TIGR00894 302 LSSLPYLF-AWLCSIFAGYLADFLKSSKTLSLTAARKIFNGIGGLGPGIFAYALPYLSA----AF--YLTIIILTLANA- 373 (465)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHcCC----ch--HHHHHHHHHHHH-
Confidence 66666554 6889999999999976543211 00011111111 11111111010 11 111222222111
Q ss_pred hhcccccccceeccccCccchhhhhhHHHHHHHHHHHHHHHHHhHHHHHHc---CcchhhHHHHHHHHHHHHHHH
Q 014616 311 FAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELV---GTGATFLILAGIAVLAVVFVI 382 (421)
Q Consensus 311 ~~~g~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~---g~~~~~~~~~~~~~~~~~~~~ 382 (421)
...+..+..+....|..|. .+|.+.++.++.+.+++++.+.+.+.+.+.. +|...|.+.++..+++.+...
T Consensus 374 ~~~~~~~~~~~~~~~~~~~-~~g~~~g~~~~~~~l~~~i~p~l~g~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~ 447 (465)
T TIGR00894 374 VSSGPLAGVLINSLDLAPR-FLGFIKGITGLPGFIGGLIASTLAGNILSQDSKNVWLIVFLIMAFVNILCVIFYL 447 (465)
T ss_pred HhhhhhhhhhhchhhcChh-HHHHHHHHHHHHHHHHHHHHHHhhheeeCCCCchHHHHHHHHHHHHHHHHHHHee
Confidence 1111223333445566665 8999999999999999999998888766543 255677777776666655443
|
|
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.6e-27 Score=227.86 Aligned_cols=362 Identities=15% Similarity=0.143 Sum_probs=224.8
Q ss_pred chhhhHHHHhhhhhhhcccchhHHHHHHHHHHHHHHHHHHhc----CChhHHHHHHHHHHhhhhhhhhhHHHHHhhcCCC
Q 014616 2 ALVGAIVGAASGGWINDAYGRKKATLLADVVFTAGAIIMAAA----PDPYVLILGRLLVGLGVGIASVTAPVYIAEASPS 77 (421)
Q Consensus 2 ~~ig~~~g~~~~g~l~dr~Grr~~~~~~~~l~~i~~~~~~~~----~s~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~ 77 (421)
..++..+++++.|+++||+|||+++.++.++.++++.++++. +++..+.+.|++.|++.|...+.....+.|++|+
T Consensus 70 ~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~ 149 (438)
T TIGR00712 70 ISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSAAVMLLMGFVPWATSSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQ 149 (438)
T ss_pred HHHHHHHhhhccchhhhccCCceehHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCc
Confidence 357889999999999999999999999999999999887764 4677888999999999999988888999999999
Q ss_pred CCccchhchHHHHHHHHHHHHHHHhhhcccCCccchHHHHhhHHHHHHHH-HHhhcCCcChHHHHhcCCHHHHHHHHHHh
Q 014616 78 EVRGGLVSTNVLMITSGQFLSYLVNLAFTEVPGTWRWMLGVSAVPAIIQF-VLMLFMPESPRWLFMKSDKEKAILVLSKI 156 (421)
Q Consensus 78 ~~rg~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~Wr~~f~~~~~~~l~~~-~~~~~~~esp~~~~~~~~~~~~~~~~~~~ 156 (421)
++|+...+........|..+++.+.........+||+.|++.++..++.. +..+++||+|+....++.++..
T Consensus 150 ~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~w~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~------- 222 (438)
T TIGR00712 150 SERGTIVSIWNCAHNIGGGIPPLLVLLGMAWFNDWHAALYFPAICAIIVALFAFAMMRDTPQSCGLPPIEEYR------- 222 (438)
T ss_pred ccchhHHHHHHHHHHhHhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhccCCHHhcCCCCchhcc-------
Confidence 99999999988888888777765543322223369999999887776654 4456678887642111110000
Q ss_pred cChhhhHHHHHHHHHHHHHHHhhcccccHHHhhcchhHHHHHHHHHHHHHHHhhcCcceehhchHHHHHH-cCCCChHHH
Q 014616 157 YDIARLEDEIDHLSAAAEEELRKKKTVRYLDVFKSKEIRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQM-AGFQSNQLA 235 (421)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~ 235 (421)
++... +..++.+.+.+. +.......++++.++......... ....+....+.|.++++ .|.+..+.+
T Consensus 223 ---~~~~~---~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~p~~l~~~~g~s~~~~~ 290 (438)
T TIGR00712 223 ---NDYPD---DYNEKAEQELTA-KEIFMQYVLPNKLLWYIAIANVFV-----YLLRYGVLDWSPTYLKEVKHFALDKSS 290 (438)
T ss_pred ---ccccc---ccccccccccch-HHHHHHHHccCchHHHHHHHHHHH-----HHHHHHHHHhHHHHHHHccCCChhhHH
Confidence 00000 000000000000 001112356777666543332211 11122333466777765 577776655
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHhhHHHHHHHHHHHHHHhhCCCCCCCcchhHHHHHHHHHHHHHhhccc
Q 014616 236 LLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLALYIAFFAPGM 315 (421)
Q Consensus 236 ~~~~~~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 315 (421)
.... .....++++.+++|+++||+++++....+........+.... .......+ .+...... +...+...+.
T Consensus 291 ~~~~-~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-----~~~~~~~~-~~~g~~~~~~ 362 (438)
T TIGR00712 291 WAYF-LYEYAGIPGTLLCGWMSDKVFKGNRGATGVFFMTLVTIAVIV-YWMNPAGN-----PLVDMICM-IVIGFLIYGP 362 (438)
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHH-HHhcCCCc-----hHHHHHHH-HHHHHHHccH
Confidence 5444 444557899999999999996543222222111111111111 11111111 01111111 1111111222
Q ss_pred ccccceeccccCccchhhhhhHHHHHHHHHHH-HHHHHHhHHHHHHcCcchhhHHHHHHHHHHHHHHHhhccCCCC
Q 014616 316 GPVPWTLNSEVYPEQYRGICGGMSATVNWISN-LIVAQTFLTVAELVGTGATFLILAGIAVLAVVFVILFVPETQG 390 (421)
Q Consensus 316 ~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~et~~ 390 (421)
.........|.+|++.|+++.|+.++.+++++ .+++.+.+.+.+..|+...++++.+.++++.+..++..||.|+
T Consensus 363 ~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~gg~~~gp~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 438 (438)
T TIGR00712 363 VMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGEKR 438 (438)
T ss_pred HHHHHHHHHHhcChhheeeehhhhchHHHhhhhhhcchhHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 22222456799999999999999999888875 5788999999998898888888888887777777777777653
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.1e-26 Score=215.68 Aligned_cols=325 Identities=17% Similarity=0.211 Sum_probs=210.2
Q ss_pred chhhhHHHHhhhhhhhcccchhHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHhhhhhhhhhHHHHHhhcCCCCCcc
Q 014616 2 ALVGAIVGAASGGWINDAYGRKKATLLADVVFTAGAIIMAAAPDPYVLILGRLLVGLGVGIASVTAPVYIAEASPSEVRG 81 (421)
Q Consensus 2 ~~ig~~~g~~~~g~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~s~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg 81 (421)
..+|+++++++.|+++||+|||+++..+.++.+++.+++++++|++.+++.|+++|++.|...+....++.|++|+++|+
T Consensus 47 ~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~l~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~ 126 (382)
T PRK10091 47 YALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGNAMFTLSSSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVT 126 (382)
T ss_pred HHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhh
Confidence 35789999999999999999999999999999999999999999999999999999999998888889999999999999
Q ss_pred chhchHHHHHHHHHHHHHHHhhhcccCCccchHHHHhhHHHHHHHHHH-hhcCCcChHHHHhcCCHHHHHHHHHHhcChh
Q 014616 82 GLVSTNVLMITSGQFLSYLVNLAFTEVPGTWRWMLGVSAVPAIIQFVL-MLFMPESPRWLFMKSDKEKAILVLSKIYDIA 160 (421)
Q Consensus 82 ~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~Wr~~f~~~~~~~l~~~~~-~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~ 160 (421)
+..+....+..+|..+++.++..+.... +||+.|++.++..++..+. ...+||.++ +.+.+
T Consensus 127 ~~~~~~~~~~~~g~~~g~~l~~~l~~~~-gwr~~f~~~~~~~~~~~~~~~~~lp~~~~----~~~~~------------- 188 (382)
T PRK10091 127 AAVAGMVSGMTVANLLGIPLGTYLSQEF-SWRYTFLLIAVFNIAVLASIYFWVPDIRD----EAKGG------------- 188 (382)
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHhhhc-cHHHHHHHHHHHHHHHHHHHHHhCCCCCc----ccccC-------------
Confidence 9998888888888888887776665544 5999999988766655443 445777542 00000
Q ss_pred hhHHHHHHHHHHHHHHHhhcccccHHHhhcchhHHHHHHHHHHHHHHHhhcCcc-eehhchHHHHHHcCCCChHHHHHHH
Q 014616 161 RLEDEIDHLSAAAEEELRKKKTVRYLDVFKSKEIRLAFLAGAGLQAFQQFTGIN-TVMYYSPTIVQMAGFQSNQLALLLS 239 (421)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~ 239 (421)
.+ ...+.++++..+....... +. ..+.. ...+..|++.+..|.+..+.+....
T Consensus 189 ----------------~~-----~~~~~~~~~~~~~~~~~~~----~~-~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~ 242 (382)
T PRK10091 189 ----------------LR-----EQFHFLRSPAPWLIFAATM----FG-NAGVFAWFSYIKPYMMFISGFSETSMTFIMM 242 (382)
T ss_pred ----------------HH-----HHHHHhcChHHHHHHHHHH----HH-HHHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 00 0012344444433222111 11 11111 1123345444567887776665554
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCChhHHHHhhHHHHHHHHHHHHHHhhCCCCCCCcchhHHHHHHHHHHHHHhhcccc-cc
Q 014616 240 LAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLALYIAFFAPGMG-PV 318 (421)
Q Consensus 240 ~~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~ 318 (421)
.. ....+++.++.+++.||+++|+....+.....++.+.+... .. . . +............ ..+.. +.
T Consensus 243 ~~-~~~~~ig~~~~g~l~~r~~~~~~~~~~~~~~~i~~~~~~~~--~~-~------~-~~~~~~~~~~~~g-~~~~~~~~ 310 (382)
T PRK10091 243 LV-GLGMVLGNLLSGRLSGRYSPLRIAAVTDFIIVLALLMLFFF--GG-M------K-TASLIFAFICCAG-LFALSAPL 310 (382)
T ss_pred HH-HHHHHHHhHHHheeccccCchhHHHHHHHHHHHHHHHHHHH--Hh-h------H-HHHHHHHHHHHHH-HHhhhHHH
Confidence 44 44578999999999999999988766554444443332211 10 0 1 1111111111111 11111 22
Q ss_pred cceeccccCccchhhhhhHHHHHHHHHHHHHHHHHhHHHHHH-cCcchhhHHHHHHHHHHHHHHHhh
Q 014616 319 PWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAEL-VGTGATFLILAGIAVLAVVFVILF 384 (421)
Q Consensus 319 ~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~ 384 (421)
......+..|++.++.+ ..++...+++.+++...+.+.+. .++...+.+.++.+.+.......+
T Consensus 311 ~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~Gp~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (382)
T PRK10091 311 QILLLQNAKGGELLGAA--GGQIAFNLGSAIGAYCGGMMLTLGLAYNYVALPAALLSFAAMSSLLLY 375 (382)
T ss_pred HHHHHHhCCcchHHHHH--HHHHHHHHHHHHHHHHhHHHHHcccCcchHHHHHHHHHHHHHHHHHHH
Confidence 22233455555555543 34667789999999999988885 567777777766665554433333
|
|
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=3e-26 Score=223.91 Aligned_cols=337 Identities=13% Similarity=0.122 Sum_probs=198.0
Q ss_pred chhhhHHHHhhhhhhhcccchhHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHhhhhhhhhhHHHHHhhcCCCCCcc
Q 014616 2 ALVGAIVGAASGGWINDAYGRKKATLLADVVFTAGAIIMAAAPDPYVLILGRLLVGLGVGIASVTAPVYIAEASPSEVRG 81 (421)
Q Consensus 2 ~~ig~~~g~~~~g~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~s~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg 81 (421)
..+|+.+++++.|+++||+|||+++..+.++++++.+++++++|+..+++.|+++|++.+... ....+++|++|+++||
T Consensus 80 ~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~~~~~-~~~~~i~~~~~~~~rg 158 (476)
T PLN00028 80 SVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTAPAVFCMSLVSSATGFIAVRFFIGFSLATFV-SCQYWMSTMFNGKIVG 158 (476)
T ss_pred HHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhhH-HHHHHHHHhcChhhee
Confidence 357889999999999999999999999999999999999999999999999999999988654 4556889999999999
Q ss_pred chhchHHHHHHHHHHHHHHHhhhc----ccC----CccchHHHHhhHHHHHHHHHHhhcC-CcChHHHHhcCCHHHHHHH
Q 014616 82 GLVSTNVLMITSGQFLSYLVNLAF----TEV----PGTWRWMLGVSAVPAIIQFVLMLFM-PESPRWLFMKSDKEKAILV 152 (421)
Q Consensus 82 ~~~~~~~~~~~~g~~l~~~~~~~~----~~~----~~~Wr~~f~~~~~~~l~~~~~~~~~-~esp~~~~~~~~~~~~~~~ 152 (421)
.+.+........|..+++.+...+ ... ..+||+.|++.+++.++..+..+++ +|.|.. +.++..
T Consensus 159 ~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~gWr~~f~i~g~l~l~~~l~~~~~~~~~p~~-----~~~~~~-- 231 (476)
T PLN00028 159 TANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFTAWRIAFFVPGLLHIIMGILVLTLGQDLPDG-----NYRELK-- 231 (476)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHcCcCCCC-----chhhHH--
Confidence 998887665555555554333221 111 1269999999888777665554444 344421 000000
Q ss_pred HHHhcChhhhHHHHHHHHHHHHHHHhhcccccHHHhhcchhHHHHHHHHHHHHHHHhhcCcceehhchHHHH-HHcCCCC
Q 014616 153 LSKIYDIARLEDEIDHLSAAAEEELRKKKTVRYLDVFKSKEIRLAFLAGAGLQAFQQFTGINTVMYYSPTIV-QMAGFQS 231 (421)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~ 231 (421)
+ ..+. .+.+....+++.+++++.+........ ... .......+.|.++ +..|++.
T Consensus 232 --------------~----~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~----~~~~~~~~~p~~l~~~~g~s~ 287 (476)
T PLN00028 232 --------------K----SGTM-PKDSFSKVLRYGVTNYRTWILALTYGY-SFG----VELTMDNIIAEYFYDRFGLSL 287 (476)
T ss_pred --------------h----cCcc-ccccHHHHHHHHHcCchhHHHHHHHHH-HHH----HHHHHHhHHHHHHHHhcCCCH
Confidence 0 0000 000001123445666665543332111 111 1111222345554 4568887
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChh-----HHHHhhHHHHHHHHHHHHHHhhCCCCCCCcchhHHHHHHHHH
Q 014616 232 NQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKK-----LALSSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLAL 306 (421)
Q Consensus 232 ~~~~~~~~~~~~~~~~~g~~~~g~l~dr~grr~-----~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (421)
.+.+.+.... .+..+++.+++|+++||++||+ .... .....+..+.... . ....+ . ......+.+
T Consensus 288 ~~a~~~~~~~-~~~~~ig~~~~G~lsDr~~~r~~~~~r~~~~-~~~~~l~~i~~~~-~--~~~~~----~-~~~~~~~~l 357 (476)
T PLN00028 288 ETAGAIAASF-GLMNLFARPAGGYLSDVAARRFGMRGRLWAL-WIVQTLGGVFCIW-L--GRANS----L-GAAIVVMIL 357 (476)
T ss_pred HHHHHHHHHH-HHHHHHHHhhhHHHHHHHHHhcCcchhHHHH-HHHHHHHHHHHHH-h--cccch----H-HHHHHHHHH
Confidence 7666555444 4557899999999999998762 1111 1111111111111 1 00110 1 111111111
Q ss_pred HHHHhhcccccccceeccccCccchhhhhhHHHHHHHHHHHHHHHHHhHHHHHHcCcchhhHHHHHHHHHHHHHHHh
Q 014616 307 YIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELVGTGATFLILAGIAVLAVVFVIL 383 (421)
Q Consensus 307 ~~~~~~~g~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 383 (421)
+..+ .....+..+++..+.. ++.|+...|+.+..+.+++.+++.+.. ..+..++...|++++++++++.+..++
T Consensus 358 ~~~~-~~~~~~~~~~~~~~~~-~~~~g~~~g~~~~~g~lg~~i~~~l~~-~~~~~~y~~~f~~~~~~~~i~~~~~~~ 431 (476)
T PLN00028 358 FSIF-VQAACGATFGIVPFVS-RRSLGVISGLTGAGGNVGAVLTQLLFF-TGSSYSTETGISLMGVMIIACTLPVAF 431 (476)
T ss_pred HHHH-HHHhhhhhcccCcccC-hhhchhhhhhhhccccHHHHHHHHHHH-hcCCccHhhHHHHHHHHHHHHHHHHHh
Confidence 1111 1111233445556654 468999999998888888888776543 112234667788888777777555544
|
|
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1e-25 Score=215.98 Aligned_cols=325 Identities=21% Similarity=0.219 Sum_probs=206.9
Q ss_pred chhhhHHHHhhhhhhhcccchhHHHHHHHHHHHHHHHHHHhc---C-----ChhHHHHHHHHHHhhhhhhhhhHHHHHhh
Q 014616 2 ALVGAIVGAASGGWINDAYGRKKATLLADVVFTAGAIIMAAA---P-----DPYVLILGRLLVGLGVGIASVTAPVYIAE 73 (421)
Q Consensus 2 ~~ig~~~g~~~~g~l~dr~Grr~~~~~~~~l~~i~~~~~~~~---~-----s~~~l~~~R~l~G~g~g~~~~~~~~~i~e 73 (421)
..+++.+++++.|+++||+|||+++..+.++++++++.++++ + ++..+++.|+++|++.+...+....++.|
T Consensus 60 ~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~ 139 (399)
T PRK05122 60 QYLATLLSRPHAGRYADTLGPKKAVVFGLCGCALSGLLYLLAGLLAAWPVLSLLLLLLGRLLLGIGESLAGTGSILWGIG 139 (399)
T ss_pred HHHHHHHhchhhHhHHhccCCcchHHHHHHHHHHHHHHHHHhhhhhccchhHHHHHHHHHHHHHhhHHhhcchHHHHHHh
Confidence 357889999999999999999999999999988887766543 2 46688999999999999999999999999
Q ss_pred cCCCCCccchhchHHHHHHHHHHHHHHHhhhcccCCccchHHHHhhHHHHHHHHHHhhcCCcChHHHHhcCCHHHHHHHH
Q 014616 74 ASPSEVRGGLVSTNVLMITSGQFLSYLVNLAFTEVPGTWRWMLGVSAVPAIIQFVLMLFMPESPRWLFMKSDKEKAILVL 153 (421)
Q Consensus 74 ~~p~~~rg~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~Wr~~f~~~~~~~l~~~~~~~~~~esp~~~~~~~~~~~~~~~~ 153 (421)
+.|+|+|+++.+........|..+++.++..+.... +||+.+++.++..++..+.....||+++ .+.++
T Consensus 140 ~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~----- 208 (399)
T PRK05122 140 RVGALHTGRVISWNGIATYGALAIGAPLGVLLYHWG-GLAGLGLLIMLLALLGLLLARPRPAVPP-----VKGER----- 208 (399)
T ss_pred hcChhhhccchhhhhhhhhHHHHHHHHHHHHHHHcc-cHHHHHHHHHHHHHHHHHHHhcCCCCCC-----CCccc-----
Confidence 999999999999888888888888888877665544 4999988766555444333332333221 00000
Q ss_pred HHhcChhhhHHHHHHHHHHHHHHHhhcccccHHHhhcchhHHHHHHHHHHHHHHHhhcCcceehhchHHHHHHcCCCChH
Q 014616 154 SKIYDIARLEDEIDHLSAAAEEELRKKKTVRYLDVFKSKEIRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQMAGFQSNQ 233 (421)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 233 (421)
.++.+.+++ .+....... ...+ +......+.|.+.++.+.+.
T Consensus 209 -----------------------------~~~~~~~~~--~~~~~~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~-- 250 (399)
T PRK05122 209 -----------------------------LPFRRVLGR--VWPYGMGLA-LASI----GFGTIATFITLYYAARGWDG-- 250 (399)
T ss_pred -----------------------------hhHHHHHHH--HHHHHHHHH-HHHH----HHHHHHHHHHHHHHHccccc--
Confidence 000111111 010000000 0000 11112233445555555532
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHhhHHHHHHHHHHHHHHhhCCCCCCCcchhHHHHHHHHHHHHHhhc
Q 014616 234 LALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLALYIAFFAP 313 (421)
Q Consensus 234 ~~~~~~~~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (421)
.+.... ......+++.++.+++.||+++|+....+.....++...+... .+ . +.......+. .+...
T Consensus 251 ~~~~~~-~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~------~~----~-~~~~~~~~l~-G~~~~ 317 (399)
T PRK05122 251 AALALT-LFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLWLA------PS----P-WMALIGAALT-GFGFS 317 (399)
T ss_pred chHHHH-HHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHh------cc----H-HHHHHHHHHH-HHhHH
Confidence 222222 3334467888999999999999988765555444443333211 00 0 1111111111 11111
Q ss_pred ccccccceeccccCccchhhhhhHHHHHHHHHHHHHHHHHhHHHHHHcCcchhhHHHHHHHHHHHHHHHhhccCCC
Q 014616 314 GMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELVGTGATFLILAGIAVLAVVFVILFVPETQ 389 (421)
Q Consensus 314 g~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~et~ 389 (421)
...+.......|.+|++.|+++.++.+....++..+++.+.+.+.+..|++..+++.++.++++.+....+ ++++
T Consensus 318 ~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~ 392 (399)
T PRK05122 318 LVFPALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVASWFGYPSIFLAAALAALLGLALTWLL-YRRA 392 (399)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHh-cccc
Confidence 22233334556889999999999999999999988888888988888898888888887777765555443 4433
|
|
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.8e-26 Score=224.76 Aligned_cols=344 Identities=17% Similarity=0.188 Sum_probs=219.7
Q ss_pred chhhhHHHHhhhhhhhcccchhHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHhhhhhhhhhHHHHHhhcCCCCCcc
Q 014616 2 ALVGAIVGAASGGWINDAYGRKKATLLADVVFTAGAIIMAAAPDPYVLILGRLLVGLGVGIASVTAPVYIAEASPSEVRG 81 (421)
Q Consensus 2 ~~ig~~~g~~~~g~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~s~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg 81 (421)
..++.+++.++.|+++||+|||+++.++.+++.+++.++++++|++.+++.|+++|++.+...+....++.|++|+++|+
T Consensus 46 ~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~ 125 (485)
T TIGR00711 46 YMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLGSLLCGVAPNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRG 125 (485)
T ss_pred HHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHH
Confidence 35788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhchHHHHHHHHHHHHHHHhhhcccCCccchHHHHhhHHHHHHHHHH-hhcCCcChHHHHhcCCHHHHHHH------HH
Q 014616 82 GLVSTNVLMITSGQFLSYLVNLAFTEVPGTWRWMLGVSAVPAIIQFVL-MLFMPESPRWLFMKSDKEKAILV------LS 154 (421)
Q Consensus 82 ~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~Wr~~f~~~~~~~l~~~~~-~~~~~esp~~~~~~~~~~~~~~~------~~ 154 (421)
+..+........|..+++.++..+.... +||+.|++.++.+++..+. .+..||+++....+.|....... ..
T Consensus 126 ~~~~~~~~~~~~g~~~g~~~~~~l~~~~-~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~l~~~~~~~~~ 204 (485)
T TIGR00711 126 RAMAIWGLTVLVAPALGPTLGGWIIENY-HWRWIFLINVPIGIIVVVVAFFILPRDKPAASENFDFLGLLLLSVGLGSLL 204 (485)
T ss_pred HHHHHHHHHHHHHhhhhhccHhHhccCc-CceehhhhhhHHHHHHHHHHHHHcCCccccccCCCcHHHHHHHHHHHHHHH
Confidence 9999999999999999988887776655 5999999988777665544 44566654311111111110000 00
Q ss_pred H--hcChh-h--hHHHHHH--------HHHHHHHHHhhcccccHHHhhcchhHHHHHHHHHHHHHHHhhcCcceehhchH
Q 014616 155 K--IYDIA-R--LEDEIDH--------LSAAAEEELRKKKTVRYLDVFKSKEIRLAFLAGAGLQAFQQFTGINTVMYYSP 221 (421)
Q Consensus 155 ~--~~~~~-~--~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (421)
. ....+ + ....... ......++.+.+++....++++++.++...+...... ...+...++.|
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~p 279 (485)
T TIGR00711 205 YGLSEGPERGWFDSNEILILSITGLVAIIAFVVWELTDDNPLVDLRLFKYRNFTIGCVYMSLLG-----LGLYGSFYLLP 279 (485)
T ss_pred HHHhhCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHcCCCCccCHHHHcCCChHHHHHHHHHHH-----HHHHHHHHHHH
Confidence 0 00000 0 0000000 0000011122223333456788887765543322211 11222335667
Q ss_pred HHHHH-cCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHhhHHHHHHHHHHHHHHhhCCCCCCCcchhHHH
Q 014616 222 TIVQM-AGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGWIA 300 (421)
Q Consensus 222 ~~~~~-~g~~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 300 (421)
.++++ .|.+..+.+... .+.....+++.++.|++.||++||+....+.....++...+.+. .... . .. +..
T Consensus 280 ~~~~~~~g~s~~~~g~~~-~~~~~~~~~~~~~~g~l~~r~~~~~~~~~g~~~~~~~~~~~~~~--~~~~--~--~~-~~~ 351 (485)
T TIGR00711 280 LYLQQVLGYTALQAGLHI-LPVGLAPMLSSPIAGRMGDKIDPRKLVTIGLILYAVGFYWRAFT--FTPD--T--PF-LAI 351 (485)
T ss_pred HHHHHhcCCCHHHHHHHH-HHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHhcc--CCCC--C--CH-HHH
Confidence 77764 688776665544 44555578999999999999999988766555444443333211 1111 1 11 111
Q ss_pred HHHHHHHHHHhhcccccccceeccccCccchhhhhhHHHHHHHHHHHHHHHHHhHHHHHH
Q 014616 301 VIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAEL 360 (421)
Q Consensus 301 ~~~~~~~~~~~~~g~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 360 (421)
.....+...... ...+.......+..|++.|+.+.++.++...+++.+++.+.+.+.+.
T Consensus 352 ~~~~~l~g~g~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~~~~~ 410 (485)
T TIGR00711 352 ALPQFIRGFGMG-CFFMPLTTIALSGLPPHKIARGSSLSNFTRQLGGSIGTALITTILTN 410 (485)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHhcCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111111111111 11112223446778999999999999999999999998888776653
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.6e-27 Score=222.29 Aligned_cols=335 Identities=17% Similarity=0.181 Sum_probs=212.5
Q ss_pred hhhhHHHHhhhhhhhcccchhHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHhhhhhhhhhHHHHHhhcCCCCCccc
Q 014616 3 LVGAIVGAASGGWINDAYGRKKATLLADVVFTAGAIIMAAAPDPYVLILGRLLVGLGVGIASVTAPVYIAEASPSEVRGG 82 (421)
Q Consensus 3 ~ig~~~g~~~~g~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~s~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg~ 82 (421)
.++..+++++.|+++||+|||+++..+.++.+++.++++++++++.+++.|+++|++.+...+...+++.|+.|+++|++
T Consensus 40 ~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~ 119 (379)
T TIGR00881 40 SIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFSTSLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGT 119 (379)
T ss_pred HHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhccccCCchHHHHHHhcCHhhhee
Confidence 57888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhchHHHHHHHHHHHHH-HHhhhcccCCccchHHHHhhHHHHHHHH-HHhhcCCcChHHHHhcCCHHHHHHHHHHhcChh
Q 014616 83 LVSTNVLMITSGQFLSY-LVNLAFTEVPGTWRWMLGVSAVPAIIQF-VLMLFMPESPRWLFMKSDKEKAILVLSKIYDIA 160 (421)
Q Consensus 83 ~~~~~~~~~~~g~~l~~-~~~~~~~~~~~~Wr~~f~~~~~~~l~~~-~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~ 160 (421)
..+........|..+++ .++....... +||+.|++.++..++.. +...+.||+|+....+++++... +
T Consensus 120 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~ 189 (379)
T TIGR00881 120 WVSFWNCSHNVGGGLLPPLVLFGIAELY-SWHWVFIVPGIIAIIVSLICFLLLRDSPQSCGLPPAEEMPN---------E 189 (379)
T ss_pred eEeehhccchhHHHHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHHHHheeeCCCccccccCccccCcc---------c
Confidence 99988888888888887 4554444433 59999998877666544 34456677764321111100000 0
Q ss_pred hhHHHHHHHHHHHHHHHhhcccccHHHhhcchhHHHHHHHHHHHHHHHhhcCcceehhchHHHH-HHcCCCChHHHHHHH
Q 014616 161 RLEDEIDHLSAAAEEELRKKKTVRYLDVFKSKEIRLAFLAGAGLQAFQQFTGINTVMYYSPTIV-QMAGFQSNQLALLLS 239 (421)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~ 239 (421)
+. ++ .+.++++...+++....+.++++.++...+....... .......+.|.+. +..|.+..+.+....
T Consensus 190 ~~----~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 259 (379)
T TIGR00881 190 EP----DG-DAEKKEEELTKKQIFLQYVLLNKVLWYISLGYVFVYV-----VRTGILDWSPLYLTQEKGFSKEKASWAFT 259 (379)
T ss_pred cc----cc-ccccccccccchHHHHHHHHhcchHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 00 00 0000000001111224456677766554333221111 1122233455555 456887666665554
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCC-hhHHHHhhHHHHHHHHHHHHHHhhCCCCCCCcchhHHHHHHHHHHHHHhhcccccc
Q 014616 240 LAVAGTNAVGTIVGIYLIDHFGR-KKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLALYIAFFAPGMGPV 318 (421)
Q Consensus 240 ~~~~~~~~~g~~~~g~l~dr~gr-r~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 318 (421)
. .....+++.++.+++.||..+ |+.... ..........+.... .... . .. +..... .....+...+..+.
T Consensus 260 ~-~~~~~~~~~~~~g~l~~r~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~--~--~~-~~~~~~-~~~~g~~~~~~~~~ 330 (379)
T TIGR00881 260 L-YELGGLVGTLLAGWLSDKLFNGRRGPLA-VFFMALIIVSLLVYW-LNPA--A--NP-LMDLIC-LFALGFLVYGPQML 330 (379)
T ss_pred H-HHHHcchhHHHHHHHHHHHcCCcchHHH-HHHHHHHHHHHHHHh-cCcc--h--hH-HHHHHH-HHHHHHHHhhhhHH
Confidence 4 444578999999999998643 333221 111111111111111 0000 0 01 111111 11111222233344
Q ss_pred cceeccccCccchhhhhhHHHHHHHHHHHHHHHHHhHHHHHHcCcchh
Q 014616 319 PWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELVGTGAT 366 (421)
Q Consensus 319 ~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 366 (421)
.+.+..|.+|++.|+++.|+.+....+++.+++.+.+.+.+..|+...
T Consensus 331 ~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~ 378 (379)
T TIGR00881 331 IGVIASELAPKKAAGTAAGFVGFFAYLGGILAGLPLGYLADGFGWAGA 378 (379)
T ss_pred HHHHHHHhcCcchhHHHHHHHHHhhhhhhhhhhhhHHHHHHhhccccc
Confidence 456778999999999999999999999999999999999998887654
|
|
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=2e-25 Score=218.77 Aligned_cols=344 Identities=16% Similarity=0.224 Sum_probs=215.8
Q ss_pred hhhhHHHHhhhhhhhcccchhHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHhhhhhhhhhHHHHHhhcCCCCCccc
Q 014616 3 LVGAIVGAASGGWINDAYGRKKATLLADVVFTAGAIIMAAAPDPYVLILGRLLVGLGVGIASVTAPVYIAEASPSEVRGG 82 (421)
Q Consensus 3 ~ig~~~g~~~~g~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~s~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg~ 82 (421)
.++..++.++.|+++||+|||+++..+.++++++.++++++++++.+++.|+++|++.+...+....++.|++|+++|+.
T Consensus 55 ~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (471)
T PRK10504 55 VLTVAVMLPASGWLADRVGVRNIFFTAIVLFTLGSLFCALSGTLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMA 134 (471)
T ss_pred HHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHH
Confidence 56788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhchHHHHHHHHHHHHHHHhhhcccCCccchHHHHhhHHHHHHHHHH-hhcCCcChHHHHhcCCHHHHHHH----HHHh-
Q 014616 83 LVSTNVLMITSGQFLSYLVNLAFTEVPGTWRWMLGVSAVPAIIQFVL-MLFMPESPRWLFMKSDKEKAILV----LSKI- 156 (421)
Q Consensus 83 ~~~~~~~~~~~g~~l~~~~~~~~~~~~~~Wr~~f~~~~~~~l~~~~~-~~~~~esp~~~~~~~~~~~~~~~----~~~~- 156 (421)
..+........|..+++.++..+.+.. +||+.|++..+..++..+. ....|+++.- ..+.+....... ....
T Consensus 135 ~~~~~~~~~~~g~~~g~~~~g~l~~~~-gw~~~f~~~~~~~~l~~~~~~~~~~~~~~~-~~r~~~~~~~~~~~~~~~~~~ 212 (471)
T PRK10504 135 AMTFVTLPGQVGPLLGPALGGLLVEYA-SWHWIFLINIPVGIIGAIATLMLMPNYTMQ-TRRFDLSGFLLLAVGMATLTL 212 (471)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHhhc-cHHHHHHHHHHHHHHHHHHHHHhCCCcccc-CCCCChHHHHHHHHHHHHHHH
Confidence 998888888889989888887766554 5999999987766655444 3344544321 001111110000 0000
Q ss_pred --cChhh---hHHHHHH--------HHHHHHHHHhhcccccHHHhhcchhHHHHHHHHHHHHHHHhhcCcceehhchHHH
Q 014616 157 --YDIAR---LEDEIDH--------LSAAAEEELRKKKTVRYLDVFKSKEIRLAFLAGAGLQAFQQFTGINTVMYYSPTI 223 (421)
Q Consensus 157 --~~~~~---~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (421)
.+.+. ....... ......++.+.+++....+++|||.+...+...... ........++.|++
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~-----~~~~~~~~~~~~~~ 287 (471)
T PRK10504 213 ALDGSKGLGLSPLAIAGLVAVGVVALLLYLLHARNNNRALFSLKLFRTRTFSLGLAGSFAG-----RIGSGMLPFMTPVF 287 (471)
T ss_pred HHhcCCcCCcchHHHHHHHHHHHHHHHHHHHHHhcCCCCccCHHHhcccchHHHHHHHHHH-----HHHHHHHHHHHHHH
Confidence 00000 0000000 000000111112222234578888876654433221 11122334566777
Q ss_pred HHH-cCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHhhHHHHHHHHHHHHHHhhCCCCCCCcchhHHHHH
Q 014616 224 VQM-AGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVI 302 (421)
Q Consensus 224 ~~~-~g~~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 302 (421)
.+. .|.+....+.. ..+......++.++.+++.||++||+.+..+.....+...++.. . .. . . .. +....
T Consensus 288 ~~~~~g~~~~~~g~~-~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~--~-~~-~-~--~~-~~~~~ 358 (471)
T PRK10504 288 LQIGLGFSPFHAGLM-MIPMVLGSMGMKRIVVQVVNRFGYRRVLVATTLGLALVSLLFML--V-AL-L-G--WY-YLLPF 358 (471)
T ss_pred HHHHcCCCHHHHHHH-HHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHh--c-cc-c-c--cH-HHHHH
Confidence 774 67766555544 44455556677788999999999999877665544444333322 1 11 1 1 11 11111
Q ss_pred HHHHHHHHhhcccccccceeccccCccchhhhhhHHHHHHHHHHHHHHHHHhHHHHHHcCc
Q 014616 303 GLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELVGT 363 (421)
Q Consensus 303 ~~~~~~~~~~~g~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~ 363 (421)
...... .......+.......+..|++.|+.+.++.++...++..+++.+.+.+.+..|+
T Consensus 359 ~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~ll~~~g~ 418 (471)
T PRK10504 359 VLFLQG-MVNSTRFSSMNTLTLKDLPDNLASSGNSLLSMIMQLSMSIGVTIAGLLLGLFGQ 418 (471)
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHcCCHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 111110 111111233345667888999999999999999999999998888877766553
|
|
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.6e-25 Score=209.13 Aligned_cols=318 Identities=14% Similarity=0.126 Sum_probs=208.6
Q ss_pred hhhhHHHHhhhhhhhcccchhHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHhhhhhhhhhHHHHHhhcCCCCCccc
Q 014616 3 LVGAIVGAASGGWINDAYGRKKATLLADVVFTAGAIIMAAAPDPYVLILGRLLVGLGVGIASVTAPVYIAEASPSEVRGG 82 (421)
Q Consensus 3 ~ig~~~g~~~~g~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~s~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg~ 82 (421)
.++..+++++.|+++||+|||+++..+.++.+++++++++++|++.+++.|+++|++.|...+....++.|++|+|+|++
T Consensus 65 ~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~ 144 (394)
T PRK10213 65 AFVAMFASLFITQTIQATDRRYVVILFAVLLTLSCLLVSFANSFSLLLIGRACLGLALGGFWAMSASLTMRLVPPRTVPK 144 (394)
T ss_pred HHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCHhHHHH
Confidence 56788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhchHHHHHHHHHHHHHHHhhhcccCCccchHHHHhhHHHHHHHHHH-hhcCCcChHHHHhcCCHHHHHHHHHHhcChhh
Q 014616 83 LVSTNVLMITSGQFLSYLVNLAFTEVPGTWRWMLGVSAVPAIIQFVL-MLFMPESPRWLFMKSDKEKAILVLSKIYDIAR 161 (421)
Q Consensus 83 ~~~~~~~~~~~g~~l~~~~~~~~~~~~~~Wr~~f~~~~~~~l~~~~~-~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~ 161 (421)
+.+......+.|..+++.++..+.+.. +||+.|++.++.+++..+. ....||+|+. + +
T Consensus 145 a~~~~~~~~~~g~~ig~~l~~~l~~~~-gw~~~f~~~~~l~~~~~l~~~~~~p~~~~~-----~-~-------------- 203 (394)
T PRK10213 145 ALSVIFGAVSIALVIAAPLGSFLGELI-GWRNVFNAAAVMGVLCIFWIIKSLPSLPGE-----P-S-------------- 203 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhc-CHHHHHHHHHHHHHHHHHHHHHHCCCCCcc-----c-c--------------
Confidence 999998888999999998888776655 4999999987766654433 3346765421 0 0
Q ss_pred hHHHHHHHHHHHHHHHhhcccccHHHhhcchhHHHHHHHHHHHHHHHhhcCcceehhchHHHHHHcCCCChHHHHHHHHH
Q 014616 162 LEDEIDHLSAAAEEELRKKKTVRYLDVFKSKEIRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQMAGFQSNQLALLLSLA 241 (421)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 241 (421)
++..+.++.+++|.++......... ... .. ....+..|.+.++.|++....+......
T Consensus 204 ------------------~~~~~~~~~l~~~~~~~~~~~~~~~-~~~-~~--~~~~~~~p~~~~~~g~s~~~~g~~~~~~ 261 (394)
T PRK10213 204 ------------------HQKQNTFRLLQRPGVMAGMIAIFMS-FAG-QF--AFFTYIRPVYMNLAGFGVDGLTLVLLSF 261 (394)
T ss_pred ------------------cchhHHHHHhcCHHHHHHHHHHHHH-HHH-HH--HHHHHHHHHHHHhcCCChhHHHHHHHHH
Confidence 0000123456777766543322111 111 11 1122345777777888877666655443
Q ss_pred HHHHHHHHHHHHHHHHhhcCChhHHHHhhHHHHHHHHHHHHHHhhCCCCCCCcchhHHHHHHHHHHHHHhhcccccccce
Q 014616 242 VAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLALYIAFFAPGMGPVPWT 321 (421)
Q Consensus 242 ~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 321 (421)
. ...+++..+.+++.||.++ +..+........+.+.+.. ... . .+.......+. .+......+...+
T Consensus 262 ~-~~~iig~~~~~~l~~r~~~-~~l~~~~~~~~~~~~~l~~--~~~---~-----~~~~~~~~~l~-G~~~~~~~~~~~~ 328 (394)
T PRK10213 262 G-IASFVGTSLSSFILKRSVK-LALAGAPLVLAVSALVLTL--WGS---D-----KIVATGVAIIW-GLTFALVPVGWST 328 (394)
T ss_pred H-HHHHHHHHHHHHHHhccch-hHHHHHHHHHHHHHHHHHH--Hhh---h-----HHHHHHHHHHH-HHHHHhhhHHHHH
Confidence 3 4478888999999999544 4333222222222111111 100 0 01111111111 1111122233334
Q ss_pred eccccCccchhhhhhHHHHHHHHHHHHHHHHHhHHHHHHcCcchhhHHHHHHHHHH
Q 014616 322 LNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELVGTGATFLILAGIAVLA 377 (421)
Q Consensus 322 ~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 377 (421)
+..+..|++ ++...+.......++..+++.+.+.+.+..|....+...+.+.++.
T Consensus 329 ~~~~~~~~~-~~~~~~~~~~~~~lg~~~G~~l~G~l~~~~g~~~~~~~~~~~~~~~ 383 (394)
T PRK10213 329 WITRSLADQ-AEKAGSIQVAVIQLANTCGAAIGGYALDNIGLTSPLMLSGTLMLLT 383 (394)
T ss_pred HHHHHCccc-HHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhhHHHHHHHHHHHH
Confidence 556666643 5566666667778888899999999999888765565555444433
|
|
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.1e-25 Score=212.81 Aligned_cols=314 Identities=13% Similarity=0.082 Sum_probs=212.6
Q ss_pred hhhhHHHHhhhhhhhcccchhHHHHHHHHHHHHHHHHHHhcC-----ChhHHHHHHHHHHhhhhhhhhhHHHHHhhcCCC
Q 014616 3 LVGAIVGAASGGWINDAYGRKKATLLADVVFTAGAIIMAAAP-----DPYVLILGRLLVGLGVGIASVTAPVYIAEASPS 77 (421)
Q Consensus 3 ~ig~~~g~~~~g~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~-----s~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~ 77 (421)
.++.++++++.|+++||+|||+++..+.++.+++..+..+++ |++.+++.|+++|++.+...+...+++.|+.|+
T Consensus 44 ~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~ 123 (365)
T TIGR00900 44 MLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLPFVALLGGLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPE 123 (365)
T ss_pred HHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCH
Confidence 568889999999999999999999999999999998888877 999999999999999999999999999999999
Q ss_pred CCccchhchHHHHHHHHHHHHHHHhhhcccCCccchHHHHhhHHHHHHHHHHhhc--CCcChHHHHhcCCHHHHHHHHHH
Q 014616 78 EVRGGLVSTNVLMITSGQFLSYLVNLAFTEVPGTWRWMLGVSAVPAIIQFVLMLF--MPESPRWLFMKSDKEKAILVLSK 155 (421)
Q Consensus 78 ~~rg~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~Wr~~f~~~~~~~l~~~~~~~~--~~esp~~~~~~~~~~~~~~~~~~ 155 (421)
++|++..+........|..+++.++..+.... +||+.|++.++..++..+..+. .||+++. ++++.
T Consensus 124 ~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~------ 191 (365)
T TIGR00900 124 EQLTQANSLSQAVRSLFYIVGPGIGGLMYATL-GIKWAIWVDAVGFAISALLIVSVRIPELAAS-----EIQAL------ 191 (365)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHHHHhcccccCCCc-----ccccc------
Confidence 99999999999999999999988887765544 5999999887766655444333 2333210 00000
Q ss_pred hcChhhhHHHHHHHHHHHHHHHhhcccccHHHhhcchhHHHHHHHHHHHHHHHhhcCcceehhchHHHHHH-cCCCChHH
Q 014616 156 IYDIARLEDEIDHLSAAAEEELRKKKTVRYLDVFKSKEIRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQM-AGFQSNQL 234 (421)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~ 234 (421)
++ + ..+ +.....+..+|+|.++............. ......+.|.+.++ .|.+..+.
T Consensus 192 -------~~--~-----~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~ 249 (365)
T TIGR00900 192 -------SN--A-----VLR----DTREGIKFVLKNPLLRTLLLLALLFNLVF----APAIVALFPYVQSKYLGRGSTHY 249 (365)
T ss_pred -------ch--h-----HHH----HHHhHHHHHHcCcHHHHHHHHHHHHHHHH----HHHHHHHhHHHHHHHhCCchHHH
Confidence 00 0 000 00112345567776665443322111111 01111345666664 68777776
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHhhHHHHHHHHHHHHHHhhCCCCCCCcchhHHHHHHHHHHHHHhhcc
Q 014616 235 ALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLALYIAFFAPG 314 (421)
Q Consensus 235 ~~~~~~~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 314 (421)
+...... ....+++.++.+++.||.+||+....+.....++...+... . . + .+........ ..+....
T Consensus 250 ~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~-~-----~~~~~~~~~~-~g~~~~~ 317 (365)
T TIGR00900 250 GWVLAAF-GLGALLGALLLGLLGRYFKRMALMTGAIFVIGLAILVVGLT---P-P-N-----FPLFLVLWFA-IGVGYGP 317 (365)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhh---c-h-h-----HHHHHHHHHH-HHHHHHH
Confidence 6555544 44578889999999999999987765543333333222211 0 0 0 1111121111 1222222
Q ss_pred cccccceeccccCccchhhhhhHHHHHHHHHHHHHHHHHhHHHHHHcC
Q 014616 315 MGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELVG 362 (421)
Q Consensus 315 ~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g 362 (421)
..+...++..|.+|++.|+++.++.++...++..+++.+.+.+.|..|
T Consensus 318 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g~l~~~~g 365 (365)
T TIGR00900 318 INVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILAGPLADHLG 365 (365)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 345566788899999999999999999999999999998888877643
|
|
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.2e-26 Score=222.54 Aligned_cols=347 Identities=14% Similarity=0.093 Sum_probs=213.1
Q ss_pred hhhhHHHHhhhhhhhcccchhHHHHHHHHHHHHHHHHHHhcCChhHHHH-HHHHHHhhhhhhhhhHHHHHhhcCCCCCcc
Q 014616 3 LVGAIVGAASGGWINDAYGRKKATLLADVVFTAGAIIMAAAPDPYVLIL-GRLLVGLGVGIASVTAPVYIAEASPSEVRG 81 (421)
Q Consensus 3 ~ig~~~g~~~~g~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~s~~~l~~-~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg 81 (421)
.++..++.++.|+++||+|||++++.+.+++.+++++++++++++.+++ .|+++|++.|...+....++.|++| ++|+
T Consensus 64 ~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~r~ 142 (455)
T TIGR00892 64 LAVLYAGGPISSILVNRFGCRPVVIAGGLLASLGMILASFSSNVIELYLTAGFITGLGLAFNFQPSLTMLGKYFY-RRRP 142 (455)
T ss_pred HHHHHHhhHHHHHHHHHcCchHHHHhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHH-hhHH
Confidence 3566778899999999999999999999999999999999999988865 5799999999877777788899996 7899
Q ss_pred chhchHHHHHHHHHHHHHHHhhhcccCCccchHHHHhhHHHHHHHHHHhhcC-CcChHHHHhcCCHHHHHHHHHHhcChh
Q 014616 82 GLVSTNVLMITSGQFLSYLVNLAFTEVPGTWRWMLGVSAVPAIIQFVLMLFM-PESPRWLFMKSDKEKAILVLSKIYDIA 160 (421)
Q Consensus 82 ~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~Wr~~f~~~~~~~l~~~~~~~~~-~esp~~~~~~~~~~~~~~~~~~~~~~~ 160 (421)
++.+....+...|..+++.+...+.... +||+.|++.++..++..+..+++ ++.+.....+.+.++. .....
T Consensus 143 ~a~g~~~~~~~~g~~~~~~l~~~l~~~~-gwr~~f~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~------~~~~~ 215 (455)
T TIGR00892 143 LANGLAMAGSPVFLSTLAPLNQYLFESF-GWRGSFLILGGLLLHCCVCGALMRPVGPSQRVSKSKSKEG------LPPDG 215 (455)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHHHHh-ChHHHHHHHHHHHHHHHHHHHHhCCCCccccccccccccc------CCCCC
Confidence 9999888888888888877766655544 59999999887766554443333 3222110000000000 00000
Q ss_pred hhHHHHHHHHHHHHHHHhhcccccHHHhhcchhHHHHHHHHHHHHHHHhhcCcceehhchHHHHHHcCCCChHHHHHHHH
Q 014616 161 RLEDEIDHLSAAAEEELRKKKTVRYLDVFKSKEIRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQMAGFQSNQLALLLSL 240 (421)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 240 (421)
. .++ .. ......+.+ +....+.+++|.++........ ...+......+.|.+.++.|.+..+.+.....
T Consensus 216 ~-~~~---~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l-----~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~ 284 (455)
T TIGR00892 216 S-TKK---LS-KKSTAEKIN-RFLDFSLFTHRGFLVYLSGNVI-----MFLGFFAPIIFLVPYAKDKGVDEYEAAFLLSI 284 (455)
T ss_pred c-ccc---cc-ccchhhhhh-hhcchHHhcCchHHHHHHHHHH-----HHHHccchHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 0 000 00 000000001 1111246777776544332211 11222333445566677788887776666555
Q ss_pred HHHHHHHHHHHHHHHHHhhc--CChhHHHHhhHHHHHHHHHHHHHHhhCCCCCCCcchhHHHHHHHHHHHHHhhcccccc
Q 014616 241 AVAGTNAVGTIVGIYLIDHF--GRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLALYIAFFAPGMGPV 318 (421)
Q Consensus 241 ~~~~~~~~g~~~~g~l~dr~--grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 318 (421)
. ....+++.++++++.||. ++|+...........+...+.... . . .. +..... .+...+......+.
T Consensus 285 ~-~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~~~-~---~----~~-~~~~i~-~~~~G~~~g~~~~~ 353 (455)
T TIGR00892 285 I-GFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLCAL-A---G----DY-TGLVIY-CIFFGLSFGSVGAL 353 (455)
T ss_pred H-HHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHH-h---c----hH-HHHHHH-HHHHHHHhchHHHH
Confidence 4 444678888999999974 333333222211111111111111 1 0 01 111111 11112222233455
Q ss_pred cceeccccCccchhhhhhHHHHHHHHHHHHHHHHHhHHHHHHcC-cchhhHHHHHHHHHHHH
Q 014616 319 PWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELVG-TGATFLILAGIAVLAVV 379 (421)
Q Consensus 319 ~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~ 379 (421)
.+++..|.+|++.++.+.|+.++...+++++++...+.+.+..+ +...|++.++..+++.+
T Consensus 354 ~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~f~~~~~~~li~~~ 415 (455)
T TIGR00892 354 LFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDATKNYKYIFYASGSIVVSAGL 415 (455)
T ss_pred HHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeehhcCCcchHHHHhhHHHHHHHH
Confidence 66777899999999999999999999999999999998888774 66777777776665544
|
|
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.9e-25 Score=213.59 Aligned_cols=325 Identities=13% Similarity=0.172 Sum_probs=209.3
Q ss_pred chhhhHHHHhhhhhhhcccchhHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHhhhhhhhhhHHHHHhhcCCCCCcc
Q 014616 2 ALVGAIVGAASGGWINDAYGRKKATLLADVVFTAGAIIMAAAPDPYVLILGRLLVGLGVGIASVTAPVYIAEASPSEVRG 81 (421)
Q Consensus 2 ~~ig~~~g~~~~g~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~s~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg 81 (421)
..+|+.+++++.|++.||+|||+++..+.++..++++++++++|++.+++.|+++|++.|...+....++.|++|+++|+
T Consensus 51 ~~~~~~i~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~ 130 (394)
T PRK03699 51 LNAGILISIFLNAWLMEIIPLKRQLIFGFALMILAVAGLMFSHSLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQRG 130 (394)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHhhHhhccchhHHhhhhcccchHH
Confidence 35789999999999999999999999999999999999999999999999999999999999988999999999999999
Q ss_pred chhchHHHHHHHHHHHHHHHhhhcccCCccchHHHHhhHHHHHHHHHHhhcCCcChHHHHhcCCHHHHHHHHHHhcChhh
Q 014616 82 GLVSTNVLMITSGQFLSYLVNLAFTEVPGTWRWMLGVSAVPAIIQFVLMLFMPESPRWLFMKSDKEKAILVLSKIYDIAR 161 (421)
Q Consensus 82 ~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~Wr~~f~~~~~~~l~~~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~ 161 (421)
...+........|..+++.+...+.....+||+.|.+.+++.++..+..++ ++.|+. ++++++
T Consensus 131 ~~~~~~~~~~~~g~~~~~~~~~~l~~~~~gw~~~f~~~~~~~~~~~~~~~~-~~~p~~---~~~~~~------------- 193 (394)
T PRK03699 131 SRLLFTDSFFSMAGMIFPIIAAYLLARSIEWYWVYACIGLVYVAIFILTLF-SEFPAL---GKHAPK------------- 193 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHh-cCCccc---cccCcc-------------
Confidence 888777666777777766665544333336999999887766655443332 222210 000000
Q ss_pred hHHHHHHHHHHHHHHHhhcccccHHHhhcchhHHHHHHHHHHHHHHHhhcCcceehhchHHHHH-HcCCCChHHHHHHHH
Q 014616 162 LEDEIDHLSAAAEEELRKKKTVRYLDVFKSKEIRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQ-MAGFQSNQLALLLSL 240 (421)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~ 240 (421)
+ .++.. ++.+ ++.++...+.. +......+....+.|.+.+ ..|.+..+.+.....
T Consensus 194 -------------~-~~~~~----~~~~-~~~~~~~~~~~-----~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~ 249 (394)
T PRK03699 194 -------------A-DKPVA----KEKW-GIGVLFLAIAA-----LLYILAQLTFISWVPEYAQKKFGMSLEDAGNLVSN 249 (394)
T ss_pred -------------c-cCccc----cccC-ChHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHcCCChHHhhHHHHH
Confidence 0 00000 0011 22222221111 1111112233346677774 568887776665555
Q ss_pred HHHHHHHHHHHHHHHHHhhcCChhHHHHhhHHHHHHHHHHHHHHhhCCCCCCCcchhHHHHHHHHHHHHHhhcccccccc
Q 014616 241 AVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLALYIAFFAPGMGPVPW 320 (421)
Q Consensus 241 ~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 320 (421)
.. ....++.++.++++||++||+.+........+...++. .. . +. . +.....+. ..+...+..+...
T Consensus 250 ~~-~~~~ig~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~---~~-~--~~---~-~~~~~~~~--~G~~~~~~~~~~~ 316 (394)
T PRK03699 250 FW-MAYMVGMWIFSFIVRFFDLQRILTVLAGLALVLMYLFV---NT-D--DP---S-HLLYAILG--LGFFSSAIYTTII 316 (394)
T ss_pred HH-HHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHH---Hc-C--Cc---h-HHHHHHHH--HHHHHHHHHHHHH
Confidence 44 44789999999999999999887654433332222211 11 1 11 1 11111111 1111222334444
Q ss_pred eeccccCccchhhhhhHHHHHHHHHHHHHHHHHhHHHHHHcCcchhhHHHHHHHHHHHHHH
Q 014616 321 TLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELVGTGATFLILAGIAVLAVVFV 381 (421)
Q Consensus 321 ~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 381 (421)
+...|..|.+ ++...+.......++..++|.+.+.+.+..|+...+++.++.+.++.+..
T Consensus 317 ~~~~~~~~~~-~~~~~g~~~~~~~~g~~i~p~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~ 376 (394)
T PRK03699 317 TLGSQQTKVA-SPKLVNFILTCGTIGTMLTFVVTSPIVAHFGLQAALLTANGLYAVVFVMC 376 (394)
T ss_pred HHHHHHccCC-CHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCchhhhhhhHHHHHHHHHHH
Confidence 4556666543 56667788888889999999999999998898888887777776665543
|
|
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.1e-24 Score=208.47 Aligned_cols=321 Identities=19% Similarity=0.193 Sum_probs=205.5
Q ss_pred chhhhHHHHhhhhhhhcccchhHHHHHHHHHHHHHHHHH---Hh-----cCChhHHHHHHHHHHhhhhhhhhhHHHHHhh
Q 014616 2 ALVGAIVGAASGGWINDAYGRKKATLLADVVFTAGAIIM---AA-----APDPYVLILGRLLVGLGVGIASVTAPVYIAE 73 (421)
Q Consensus 2 ~~ig~~~g~~~~g~l~dr~Grr~~~~~~~~l~~i~~~~~---~~-----~~s~~~l~~~R~l~G~g~g~~~~~~~~~i~e 73 (421)
..++..+++++.|+++||+||||++..+.+...++++.. +. .+|++.+++.|+++|++.+...+...+++.|
T Consensus 60 ~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~ 139 (392)
T PRK12382 60 QFLATVLTRGYAGRLADQYGAKRSALQGMLACGLAGLAYLLAAILPVSAPFKFALLVVGRLILGFGESQLLTGALTWGLG 139 (392)
T ss_pred HHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 356788999999999999999999999988877765533 22 3578899999999999999999999999999
Q ss_pred cCCCCCccchhchHHHHHHHHHHHHHHHhhhcccCCccchHHHHhhHHHHHHHHHHhhcCCcChHHHHhcCCHHHHHHHH
Q 014616 74 ASPSEVRGGLVSTNVLMITSGQFLSYLVNLAFTEVPGTWRWMLGVSAVPAIIQFVLMLFMPESPRWLFMKSDKEKAILVL 153 (421)
Q Consensus 74 ~~p~~~rg~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~Wr~~f~~~~~~~l~~~~~~~~~~esp~~~~~~~~~~~~~~~~ 153 (421)
+.|+|+|+++++........|..++++++..+.... +||+.+.+..+..++.+......||++.. ++++
T Consensus 140 ~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~~l~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~------- 208 (392)
T PRK12382 140 LVGPKHSGKVMSWNGMAMYGALAAGAPLGLLLHSHF-GFAALALTTMVLPLLAWAFNGTVRKVPAH---AGER------- 208 (392)
T ss_pred hCCccccchhhhHHHHHHHHHHHHHHHHHHHHHhcc-ChHHHHHHHHHHHHHHHHHHHhccCCCCC---cccC-------
Confidence 999999999999988888888888888877665544 59988776554433333222223332210 0000
Q ss_pred HHhcChhhhHHHHHHHHHHHHHHHhhcccccHHHhhcchhHHHHHHHHHHHHHHHhhcCcceehhchHHHHHHcCCCChH
Q 014616 154 SKIYDIARLEDEIDHLSAAAEEELRKKKTVRYLDVFKSKEIRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQMAGFQSNQ 233 (421)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 233 (421)
.+ .+ + ..+..+ .+..... +. ..+......+.|.++++.+.+..
T Consensus 209 -------------~~--------~~--~--~~~~~~-~~~~~~~-l~---------~~~~~~~~~~~~~~~~~~~~~~~- 251 (392)
T PRK12382 209 -------------PS--------LW--S--VVGLIW-KPGLGLA-LQ---------GVGFAVIGTFVSLYFASKGWAMA- 251 (392)
T ss_pred -------------ch--------HH--H--HHHHHH-HhHHHHH-HH---------HHHHhHHHHHHHHHHHhcCCchh-
Confidence 00 00 0 000011 1111100 00 00111122344555565555432
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHhhHHHHHHHHHHHHHHhhCCCCCCCcchhHHHHHHHHHHHHHhhc
Q 014616 234 LALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLALYIAFFAP 313 (421)
Q Consensus 234 ~~~~~~~~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (421)
+. .........+++.++.|++.||.++|+....+.....++...+.. . . + . +.......+.. +...
T Consensus 252 -~~-~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~---~-~--~----~-~~~~~~~~l~g-~~~~ 317 (392)
T PRK12382 252 -GF-TLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLWL---A-P--T----A-WVALAGAALTG-AGCS 317 (392)
T ss_pred -HH-HHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHHH---c-c--c----H-HHHHHHHHHHH-HHHH
Confidence 22 223334446788899999999999998876655544444433221 1 0 0 1 11111111111 1111
Q ss_pred ccccccceeccccCccchhhhhhHHHHHHHHHHHHHHHHHhHHHHHHcCcchhhHHHHHHHHHHHHHHHhh
Q 014616 314 GMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELVGTGATFLILAGIAVLAVVFVILF 384 (421)
Q Consensus 314 g~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 384 (421)
...+...+...|.+|++.|+++.|+.++...+++.+++...+.+.+..|+...|.+.++..++..++.+..
T Consensus 318 ~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 388 (392)
T PRK12382 318 LIFPALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATSFGYPSVFLAGAISAVLGIIVTILS 388 (392)
T ss_pred hHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHhh
Confidence 12344445667889999999999999999999999999999999999999888888888777776655543
|
|
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.4e-25 Score=213.01 Aligned_cols=333 Identities=23% Similarity=0.272 Sum_probs=210.2
Q ss_pred hhhhHHHHhhhhhhhcccchhHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHhhhhhhhhhHHHHHhhcCCCCCccc
Q 014616 3 LVGAIVGAASGGWINDAYGRKKATLLADVVFTAGAIIMAAAPDPYVLILGRLLVGLGVGIASVTAPVYIAEASPSEVRGG 82 (421)
Q Consensus 3 ~ig~~~g~~~~g~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~s~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg~ 82 (421)
.++.++++++.|+++||+|||+.+..+.++..++..+.+++++++.+++.|++.|++.+...+...+++.|++|+++|++
T Consensus 62 ~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~ 141 (398)
T TIGR00895 62 LIGMAFGALFFGPLADRIGRKRVLLWSILLFSVFTLLCALATNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGT 141 (398)
T ss_pred HHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhcccccchhhHHHHHHHHcCHHhhch
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhchHHHHHHHHHHHHHHHhhhcccCCccchHHHHhhHHHHHH-HHHHhhcCCcChHHHHhcCCHHHHHHHHHHhcChhh
Q 014616 83 LVSTNVLMITSGQFLSYLVNLAFTEVPGTWRWMLGVSAVPAII-QFVLMLFMPESPRWLFMKSDKEKAILVLSKIYDIAR 161 (421)
Q Consensus 83 ~~~~~~~~~~~g~~l~~~~~~~~~~~~~~Wr~~f~~~~~~~l~-~~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~ 161 (421)
..+........|..+++.++..+.... +||+.|++.++..++ ..+...++||+|++...+ +.++..+..++......
T Consensus 142 ~~~~~~~~~~~g~~~~~~~~~~l~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 219 (398)
T TIGR00895 142 AVGLMFCGYPIGAAVGGFLAGWLIPVF-GWRSLFYVGGIAPLLLLLLLMRFLPESIDFLVSK-RPETVRRIVNAIAPQMQ 219 (398)
T ss_pred hHhhHhhHHHHHHHHHHHHHHHHhhcc-cceeehhhhhhHHHHHHHHHHHhCCCCChHHHhc-CHHHHHHHHHHHHHhcc
Confidence 999999888999999888876665544 599999988654444 444456789988765544 22222211111100000
Q ss_pred hHHHHHHHHHHHHHHHhhccccc-HHHhhcchhHHHHHHHHHHHHHHHhhcCcceehhchHHHHHHcCCCChHHHHHHHH
Q 014616 162 LEDEIDHLSAAAEEELRKKKTVR-YLDVFKSKEIRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQMAGFQSNQLALLLSL 240 (421)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 240 (421)
.+.++ ...+++.+.++... ...+++++..+........ .+...........+.|.+.++.|.+..+.+.....
T Consensus 220 --~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 293 (398)
T TIGR00895 220 --AEAQS--ALPEQKATQGTKRSVFKALFQGKTARITVLLWLL--YFMLLVGVYFLTNWLPKLMVELGFSLSLAATGGAL 293 (398)
T ss_pred --ccccc--cccccccccchhhHHHHHHhcchhHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 00000 00000000000011 1222333222221111111 11111222333445677777788887666655544
Q ss_pred HHHHHHHHHHHHHHHHHhhcCChhHHHHhhHHHHHHHHHHHHHHhhCCCCCCCcchhHHHHHHHHHHHHHhhcccccccc
Q 014616 241 AVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLALYIAFFAPGMGPVPW 320 (421)
Q Consensus 241 ~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 320 (421)
. ....+++.++.++++||++||+.........+ ....+.. ... + . +...... +...+......+..+
T Consensus 294 ~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~--~~~---~---~--~~~~~~~-~~~g~~~~~~~~~~~ 360 (398)
T TIGR00895 294 F-NFGGVIGSIIFGWLADRLGPRVTALLLLLGAV-FAVLVGS--TLF---S---P--TLLLLLG-AIAGFFVNGGQSGLY 360 (398)
T ss_pred H-HHHHHHHHHHHHHHHhhcchHHHHHHHHHHHH-HHHHHHH--Hhh---C---H--HHHHHHH-HHHHHHHHHHHHHHH
Confidence 4 44578999999999999998844332222222 1111111 010 0 0 1111111 111122223345567
Q ss_pred eeccccCccchhhhhhHHHHHHHHHHHHHHHHHhHH
Q 014616 321 TLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLT 356 (421)
Q Consensus 321 ~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~ 356 (421)
++..|.+|++.|+++.|+.++...++..+++.+.+.
T Consensus 361 ~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~G~ 396 (398)
T TIGR00895 361 ALMALFYPTAIRATGVGWAIGIGRLGAIIGPILAGY 396 (398)
T ss_pred HHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHh
Confidence 788999999999999999999999999888877654
|
|
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.4e-24 Score=208.54 Aligned_cols=328 Identities=16% Similarity=0.175 Sum_probs=198.9
Q ss_pred chhhhHHHHhhhhhhhcccchhHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHhhhhhhhhhHHHHHhhcCCCCCcc
Q 014616 2 ALVGAIVGAASGGWINDAYGRKKATLLADVVFTAGAIIMAAAPDPYVLILGRLLVGLGVGIASVTAPVYIAEASPSEVRG 81 (421)
Q Consensus 2 ~~ig~~~g~~~~g~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~s~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg 81 (421)
..+|..+++++.|+++||+|||+++..+.++++++++++++++|++.+++.|+++|++.+...+....++.|++|+++|+
T Consensus 60 ~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~ 139 (413)
T PRK15403 60 YLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAATLFTTSMTQFLIARFIQGTSICFIATVGYVTVQEAFGQTKGI 139 (413)
T ss_pred HHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 46789999999999999999999999999999999999999999999999999999999887777888999999999999
Q ss_pred chhchHHHHHHHHHHHHHHHhhhcccCCccchHHHHhhHHHHHHHHHH-hhcCCcChHHHHhcCCHHHHHHHHHHhcChh
Q 014616 82 GLVSTNVLMITSGQFLSYLVNLAFTEVPGTWRWMLGVSAVPAIIQFVL-MLFMPESPRWLFMKSDKEKAILVLSKIYDIA 160 (421)
Q Consensus 82 ~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~Wr~~f~~~~~~~l~~~~~-~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~ 160 (421)
+.++.......+|..+++.++..+.+.. +||+.|++.++..++..+. ++.+||+++. ++++..
T Consensus 140 ~~~~~~~~~~~~~~~~g~~lg~~l~~~~-gw~~~f~~~~~~~~i~~~~~~~~lp~~~~~----~~~~~~----------- 203 (413)
T PRK15403 140 KLMAIITSIVLVAPIIGPLSGAALMHFV-HWKVLFAIIAVMGLIAFVGLLLAMPETVKR----GAVPFS----------- 203 (413)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHHHHHhCCCCccc----cCCCCC-----------
Confidence 9999888888889999988887665544 5999999988877766544 4567887531 100000
Q ss_pred hhHHHHHHHHHHHHHHHhhcccccHHHhhcchhHHHHHHHHHHHHHHHhhcCcceehhchHHHHHH-cCCCChHHHHHHH
Q 014616 161 RLEDEIDHLSAAAEEELRKKKTVRYLDVFKSKEIRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQM-AGFQSNQLALLLS 239 (421)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~ 239 (421)
.+ +....+++++|||.++...+..... .........+.|.++++ .|.+..+.+...
T Consensus 204 -------------~~----~~~~~~~~ll~~~~~~~~~l~~~~~-----~~~~~~~~~~~P~~l~~~~g~s~~~~gl~~- 260 (413)
T PRK15403 204 -------------AK----SVLRDFRNVFRNRLFLTGAATLSLS-----YIPMMSWVAVSPVILIDAGGMTTSQFAWTQ- 260 (413)
T ss_pred -------------hH----HHHHHHHHHHcCHHHHHHHHHHHHH-----HHHHHHHHHhChHHHHHhcCCCHHHHHHHH-
Confidence 00 0011245677888777644332211 11122223345766665 578776665554
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCChhHHHHhhHHHHHHHHHHHHHHhhCCCCCCCcchhHHHHHHHHHHHHHhhccccccc
Q 014616 240 LAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLALYIAFFAPGMGPVP 319 (421)
Q Consensus 240 ~~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 319 (421)
.+..+...+++.+.+++.+|..+++..........++...+........ . .. +....+..++..... ...|..
T Consensus 261 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ig~~l~~~~~~~~~-~----~~-~~~~~~~~l~~~G~~-~~~p~~ 333 (413)
T PRK15403 261 VPVFGAVIVANAIVARFVKDPTEPRFIWRAVPIQLVGLALLIVGNLLWP-H----VW-LWSVLGTSLYAFGIG-LIFPTL 333 (413)
T ss_pred HHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHcc-c----cH-HHHHHHHHHHHHHHH-HHhHHH
Confidence 3333445666666666655444444322222222222222222111111 0 11 111111111111111 111222
Q ss_pred ceeccccCccchhhhhhHHHHHHHHHHHHHHHHHhHHHHHHcCcchhhHHHHHHHHHH
Q 014616 320 WTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELVGTGATFLILAGIAVLA 377 (421)
Q Consensus 320 ~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 377 (421)
....-+. +...+|++.++.+..+......++....++.++ +...+|...+..+.+.
T Consensus 334 ~~~al~~-~~~~~G~a~a~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~ 389 (413)
T PRK15403 334 FRFTLFS-NNLPKGTVSASLNMVILMVMAVSVEIGRWLWFN-GGRLPFHLLAVVAGVI 389 (413)
T ss_pred HHHHhcc-CCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCchHHHHHHHHHHHH
Confidence 2111111 122367788888888777777777776666555 3344555554444433
|
|
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.9e-24 Score=207.68 Aligned_cols=316 Identities=20% Similarity=0.175 Sum_probs=203.5
Q ss_pred chhhhHHHHhhhhhhhcccchhHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHhhhhhhhhhHHHHHhhcCCCCCcc
Q 014616 2 ALVGAIVGAASGGWINDAYGRKKATLLADVVFTAGAIIMAAAPDPYVLILGRLLVGLGVGIASVTAPVYIAEASPSEVRG 81 (421)
Q Consensus 2 ~~ig~~~g~~~~g~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~s~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg 81 (421)
..+++.+++++.|+++||+|||+++.++..+.+++++.+.++++++.+++.|+++|++.+...+....++.|++|+++|+
T Consensus 57 ~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~ 136 (406)
T PRK15402 57 YLAGGMFLQWLLGPLSDRIGRRPVMLAGVAFFILTCLAILLAQSIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEADAI 136 (406)
T ss_pred HHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhHHH
Confidence 35788899999999999999999999999999999999999999999999999999999998888999999999999998
Q ss_pred chhchHHHHHHHHHHHHHHHhhhcccCCccchHHHHhhHHHHHHHHHH-hhcCCcChHHHHhcCCHHHHHHHHHHhcChh
Q 014616 82 GLVSTNVLMITSGQFLSYLVNLAFTEVPGTWRWMLGVSAVPAIIQFVL-MLFMPESPRWLFMKSDKEKAILVLSKIYDIA 160 (421)
Q Consensus 82 ~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~Wr~~f~~~~~~~l~~~~~-~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~ 160 (421)
+..+........+..+++.++..+.+.. +||+.|++.++..++..+. ....||+++... ++++
T Consensus 137 ~~~~~~~~~~~~~~~~g~~i~~~l~~~~-~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~------------ 200 (406)
T PRK15402 137 KITALMANVALLAPLLGPLVGAALIHVL-PWRGMFVLFAALAALSFFGLWRAMPETAGRVG---EKLS------------ 200 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcc-CccHHHHHHHHHHHHHHHHHHHhCCCCCcccc---cccc------------
Confidence 8877766666677777877776655544 5999999888776665543 345677653210 0000
Q ss_pred hhHHHHHHHHHHHHHHHhhcccccHHHhhcchhHHHHHHHHHHHHHHHhhcCcceehhchHHHH-HHcCCCChHHHHHHH
Q 014616 161 RLEDEIDHLSAAAEEELRKKKTVRYLDVFKSKEIRLAFLAGAGLQAFQQFTGINTVMYYSPTIV-QMAGFQSNQLALLLS 239 (421)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~ 239 (421)
. ++ ...++++.+++|.++......... ... ......+.|.++ ++.|.+..+.+....
T Consensus 201 -----~--------~~----~~~~~~~~~~~~~~~~~~~~~~~~-~~~----~~~~~~~~p~~~~~~~g~~~~~~g~~~~ 258 (406)
T PRK15402 201 -----L--------KE----LGRDYKLVLKNRRFVAGALALGLV-SLP----LLAWIALSPVILISGEQLSSYEYGLLQV 258 (406)
T ss_pred -----H--------HH----HHHHHHHHHcCcHHHHHHHHHHHH-HHH----HHHHHHHhHHHHHHHhCCCHHHHHHHHH
Confidence 0 00 001234567777665433322111 110 111122345554 457887666655444
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCChhHHHHhhHHHHHHHHHHHHHHhhCCCCCCCcchhHHHHHHHHHHHHHhhccccccc
Q 014616 240 LAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLALYIAFFAPGMGPVP 319 (421)
Q Consensus 240 ~~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 319 (421)
.. .+..+++.++.+++.||.++|+....+.....++...+........ ....+. ..+..++... .....+..
T Consensus 259 ~~-~~~~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-----~~~~~~-~~~~~~~g~g-~~~~~~~~ 330 (406)
T PRK15402 259 PV-FGALIAGNLTLARLTSRRPLRSLIRMGLWPMVAGLLLAALATVISS-----HAYLWL-TAGLSLYAFG-IGLANAGL 330 (406)
T ss_pred HH-HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHccc-----ccHHHH-HHHHHHHHHH-HHHHhhhH
Confidence 33 3446788999999999999998876665554444444433211110 011111 1111111111 11111222
Q ss_pred ceeccccCccchhhhhhHHHHHHHHHHHHHHHHHhHHHHHHcCcc
Q 014616 320 WTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELVGTG 364 (421)
Q Consensus 320 ~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~ 364 (421)
..... ..+++.|++..+..++.+.+++.+++.+...+.+..++.
T Consensus 331 ~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~ 374 (406)
T PRK15402 331 YRLTL-FSSDVSKGTVSAAMGMLSMLIFTVGIELSKHAYLGGGNG 374 (406)
T ss_pred HHHHh-hhccccccHHHHHHHHHHHHHHHHHHHHHHhcccCCchH
Confidence 22222 224478999999999999999988888887776665543
|
|
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=99.94 E-value=4e-24 Score=203.23 Aligned_cols=323 Identities=16% Similarity=0.160 Sum_probs=205.1
Q ss_pred hhhhHHHHhhhhhhhcccchhHHHHH-HHHHHHHHHHHHHhcCChhHHHHHHHHHHhhhhhhhhhHHHHHhhcCCCCCcc
Q 014616 3 LVGAIVGAASGGWINDAYGRKKATLL-ADVVFTAGAIIMAAAPDPYVLILGRLLVGLGVGIASVTAPVYIAEASPSEVRG 81 (421)
Q Consensus 3 ~ig~~~g~~~~g~l~dr~Grr~~~~~-~~~l~~i~~~~~~~~~s~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg 81 (421)
.++..+.+++.|+++||+||||.+.. +.++..++..++++++|++.+++.|+++|.+.+...+....+..|+.|+++|+
T Consensus 43 ~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~ 122 (375)
T TIGR00899 43 AIVGIAVSQLLATRSDYQGDRKGLILFCCLLAALACLLFAWNRNYFLLLVLGVLLSSFASTANPQLFALAREHADRTGRE 122 (375)
T ss_pred HHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcchh
Confidence 34567778899999999999887654 56666677888899999999999999999888888888888999998888776
Q ss_pred ch--hchHHHHHHHHHHHHHHHhhhcccCCccchHHHHhhHHHHHHHHHH-hhcCCcChHHHHhcCCHHHHHHHHHHhcC
Q 014616 82 GL--VSTNVLMITSGQFLSYLVNLAFTEVPGTWRWMLGVSAVPAIIQFVL-MLFMPESPRWLFMKSDKEKAILVLSKIYD 158 (421)
Q Consensus 82 ~~--~~~~~~~~~~g~~l~~~~~~~~~~~~~~Wr~~f~~~~~~~l~~~~~-~~~~~esp~~~~~~~~~~~~~~~~~~~~~ 158 (421)
.. .+........|..+++.++..+.+.. +||+.|++.++..++..+. ++++||+|+....+.
T Consensus 123 ~~~~~~~~~~~~~~g~~ig~~~~~~l~~~~-~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------- 187 (375)
T TIGR00899 123 AVMFSSVMRAQISLAWVIGPPLAFWLALGF-GFTVMFLTAALAFVLCGVLVWLFLPSYPRGAPGAL-------------- 187 (375)
T ss_pred hHHHHHHHHHHHhHHHHHhhhHHHHHHHhc-ccHHHHHHHHHHHHHHHHHHHHhCCCcccCccccc--------------
Confidence 43 45555666778888887777665544 5999999988876665544 455788764211000
Q ss_pred hhhhHHHHHHHHHHHHHHHhhcccccHHHhhcchhHHHHHHHHHHHHHHHhhcCcceehhchHHHH-HHcCCCChHHHHH
Q 014616 159 IARLEDEIDHLSAAAEEELRKKKTVRYLDVFKSKEIRLAFLAGAGLQAFQQFTGINTVMYYSPTIV-QMAGFQSNQLALL 237 (421)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~ 237 (421)
+..+.++.+++++.+............ ......+.|.++ ++.|.+..+.+..
T Consensus 188 ----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~g~~~~~~g~~ 240 (375)
T TIGR00899 188 ----------------------TRLEVRGLLASRDTRLLFVACTLMWGC-----NILYIINMPLLIIHELGLPDKLAGLM 240 (375)
T ss_pred ----------------------CcchhhhhhcCcchHHHHHHHHHHHHH-----HHHHHhhhHHHHHHHcCCCHHHHHHH
Confidence 000111234455444332222111111 111112334444 5678877666554
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCChhHHHHhhHHHHHHHHHHHHHHhhCCCCCCCcchhHHHHHHHHHHHHHhhccccc
Q 014616 238 LSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLALYIAFFAPGMGP 317 (421)
Q Consensus 238 ~~~~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 317 (421)
... ..+...++.++.|++.||++||+..........+....+.. .. + .+.......+. .+......+
T Consensus 241 ~~~-~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~---~~---~-----~~~~~~~~~~~-g~~~g~~~~ 307 (375)
T TIGR00899 241 MGT-AAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGLAA---DN---S-----LWALLMLQLLN-AIFIGILAG 307 (375)
T ss_pred HHH-HHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHHH---HH---H-----HHHHHHHHHHH-HHHHHHHHH
Confidence 433 33345677889999999999998776544333222222111 00 0 01111111111 111111234
Q ss_pred ccceeccccCccchhhhhhHHHHHHHHHHHHHHHHHhHHHHHHcCcchhhHHHHHHHHHHHHHH
Q 014616 318 VPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELVGTGATFLILAGIAVLAVVFV 381 (421)
Q Consensus 318 ~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 381 (421)
....+..|..|++ |+.+.++.+...+++..+++.+.+.+.+..|+...+.+.+...+++.+..
T Consensus 308 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~g~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~ 370 (375)
T TIGR00899 308 IGMLYFQDLMPGR-AGAATTLYTNTGRVGWIIAGSVGGILAERWSYHAVYWFAIVMLIVALFCL 370 (375)
T ss_pred HHHHHHHHhCcch-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHH
Confidence 4456677888765 56888999999999999999999998888888888887777766665544
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.3e-24 Score=207.27 Aligned_cols=306 Identities=19% Similarity=0.263 Sum_probs=202.2
Q ss_pred chhhhHHHHhhhhhhhcccchhHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHhhhhhhhhhHHHHHhhcCCCCCcc
Q 014616 2 ALVGAIVGAASGGWINDAYGRKKATLLADVVFTAGAIIMAAAPDPYVLILGRLLVGLGVGIASVTAPVYIAEASPSEVRG 81 (421)
Q Consensus 2 ~~ig~~~g~~~~g~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~s~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg 81 (421)
..++..+++++.|+++||+|||+++..+.++..++.+.++++++++.+++.|+++|++.+...+....++.|++|+++|+
T Consensus 49 ~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~ 128 (385)
T TIGR00710 49 YLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLALSNNIETLLVLRFVQAFGASAGSVISQALVRDIYPGEELS 128 (385)
T ss_pred HHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHHHH
Confidence 35788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhchHHHHHHHHHHHHHHHhhhcccCCccchHHHHhhHHHHHHHHHH-hhcCCcChHHHHhcCCHHHHHHHHHHhcChh
Q 014616 82 GLVSTNVLMITSGQFLSYLVNLAFTEVPGTWRWMLGVSAVPAIIQFVL-MLFMPESPRWLFMKSDKEKAILVLSKIYDIA 160 (421)
Q Consensus 82 ~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~Wr~~f~~~~~~~l~~~~~-~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~ 160 (421)
+..+........|..+++.++..+.... +||+.|++.++..++..+. .+..||+++.. ++++
T Consensus 129 ~~~~~~~~~~~~g~~~g~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~------------ 191 (385)
T TIGR00710 129 RIYSILMPVLALAPAVAPLLGGYILVWL-SWHAIFAFLSLAGILLSALIFFILPETLPYE----ARIQ------------ 191 (385)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHc-CHHHHHHHHHHHHHHHHHHHHHhCCCCCCCc----ccCC------------
Confidence 9999988888888888888777655544 5999999887766655444 44567764310 0000
Q ss_pred hhHHHHHHHHHHHHHHHhhcccccHHHhhcchhHHHHHHHHHHHHHHHhhcCcceehhchHHHHH-HcCCCChHHHHHHH
Q 014616 161 RLEDEIDHLSAAAEEELRKKKTVRYLDVFKSKEIRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQ-MAGFQSNQLALLLS 239 (421)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~ 239 (421)
.+ +.....++.+++|+++........... .......+.|.+.+ +.|.+..+.+....
T Consensus 192 -------------~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~g~~~~~~g~~~~ 249 (385)
T TIGR00710 192 -------------IS----TYFETFLLLLKSKMFWGYALIYGASFG-----GFFAFFSGAPFVYIDIMGVSPSVFGLLFA 249 (385)
T ss_pred -------------HH----HHHHHHHHHHcCchhHHHHHHHHHHHH-----HHHHHHHcChHHHHHHcCCCHHHHHHHHH
Confidence 00 000113345666665543332211111 11122234455554 67887776665554
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCChhHHHHhhHHHHHHHHHHHHHHhhCCCCCCCcchhHHHHHHHHHHHHHhhccccccc
Q 014616 240 LAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLALYIAFFAPGMGPVP 319 (421)
Q Consensus 240 ~~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 319 (421)
. .....+++.++.+++.||+++|+....+.....++...+........ . .+...........+......+..
T Consensus 250 ~-~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~---~~~~~~~~~~~~g~~~~~~~~~~ 321 (385)
T TIGR00710 250 L-NIIAMIFGGFLNGRFIKKWGAKSLLRMGLILFAVSAVLLEITAILGL----G---SWAMIIGPMMFVGIGNSMISSIA 321 (385)
T ss_pred H-HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHhcc----c---hHHHHHHHHHHHHHHHHHHHHHH
Confidence 4 44557889999999999999998876655544444443332211100 0 01111111111111122223444
Q ss_pred ceeccccCccchhhhhhHHHHHHHHHHHHHHHHHhH
Q 014616 320 WTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFL 355 (421)
Q Consensus 320 ~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~ 355 (421)
.....|..| +.|+++.++.++....++.+.+...+
T Consensus 322 ~~~~~~~~~-~~~g~~~~~~~~~~~~~g~i~~~~~~ 356 (385)
T TIGR00710 322 MAYALEDFP-HVAGTASALFGTLRLVLGAIVGYLVS 356 (385)
T ss_pred HHHHhccCc-ccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 556677777 56889999888887766666655555
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.2e-24 Score=202.82 Aligned_cols=315 Identities=14% Similarity=0.176 Sum_probs=208.1
Q ss_pred chhhhHHHHhhhhhhhcccchhHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHhhhhhhhhhHHHHHhhcCCCCCcc
Q 014616 2 ALVGAIVGAASGGWINDAYGRKKATLLADVVFTAGAIIMAAAPDPYVLILGRLLVGLGVGIASVTAPVYIAEASPSEVRG 81 (421)
Q Consensus 2 ~~ig~~~g~~~~g~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~s~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg 81 (421)
..+|..+++++.|+++||+|||+++..+.++.++++.++++++|++.+++.|+++|++.+...+.....+.|..|+++|+
T Consensus 50 ~~l~~~~~~~~~g~l~dr~g~k~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~ 129 (381)
T PRK03633 50 YFTGNLVGTLLAGYVIKRIGFNRSYYLASLIFAAGCAGLGLMVGFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRNRG 129 (381)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 35788999999999999999999999999999999999999999999999999999999999988888888999999999
Q ss_pred chhchHHHHHHHHHHHHHHHhhhcccCCccchHHHHhhHHHHHHHH-HHhhcCCcChHHHHhcCCHHHHHHHHHHhcChh
Q 014616 82 GLVSTNVLMITSGQFLSYLVNLAFTEVPGTWRWMLGVSAVPAIIQF-VLMLFMPESPRWLFMKSDKEKAILVLSKIYDIA 160 (421)
Q Consensus 82 ~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~Wr~~f~~~~~~~l~~~-~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~ 160 (421)
+.++........|..+++.++..+.... .|+. .+..+......+ +.....+|++. +
T Consensus 130 ~~~~~~~~~~~~g~~~g~~~~~~l~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~------~--------------- 186 (381)
T PRK03633 130 RLLAAYMMVYYLGTVLGQLLVSKVSTEL-MSVL-PWVTGLVLAAILPLLFTRILNQQA------E--------------- 186 (381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccccc-cchH-HHHHHHHHHHHHHHHHhcccCCCC------C---------------
Confidence 9999999999999999988877654432 1222 222222111111 11111122100 0
Q ss_pred hhHHHHHHHHHHHHHHHhhcccccHHHhhcchhHHHHHHHHHHHHHHHhhcCcceehhchHHHHHHcCCCChHHHHHHHH
Q 014616 161 RLEDEIDHLSAAAEEELRKKKTVRYLDVFKSKEIRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQMAGFQSNQLALLLSL 240 (421)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 240 (421)
+++..+..+.++++..+....... .... .......+.|.+.++.|.+....+.+...
T Consensus 187 ------------------~~~~~~~~~~~~~~~~~~~~~~~~-~~~~----~~~~~~~~lp~~~~~~g~s~~~~g~~~~~ 243 (381)
T PRK03633 187 ------------------NHDSTSIWPMLKLRQARLGVNGCI-ISGI----VLGSLYGLMPLYLNHQGMSDASIGFWMAL 243 (381)
T ss_pred ------------------CCCCCCHHHHHHhcchHHHHHHHH-HHHH----HHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 000112334556665543221111 1111 11112235677777778877666665554
Q ss_pred HHHHHHHHHHHHHHHHHhhcCChhHHHHhhHHHHHHHHHHHHHHhhCCCCCCCcchhHHHHHHHHHHHHHhhcccccccc
Q 014616 241 AVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLALYIAFFAPGMGPVPW 320 (421)
Q Consensus 241 ~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 320 (421)
. ....+++.+..|++.||+++|+.+..+.....++.+.+. . . ... ..... +.. .......|...
T Consensus 244 ~-~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~-----~-~----~~~-~~~~~---l~g-~~~~~~~p~~~ 307 (381)
T PRK03633 244 L-VSAGILGQWPIGRLADRFGRLLVLRVQVFVVILGSIAML-----S-Q----AAM-APALF---ILG-AAGFTLYPVAM 307 (381)
T ss_pred H-HHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHHHHh-----h-h----HHH-HHHHH---HHH-HHHHhHHHHHH
Confidence 4 345788999999999999999877655444333332211 0 0 000 11111 111 11112346666
Q ss_pred eeccccCccchhhhhhHHHHHHHHHHHHHHHHHhHHHHHHcCcchhhHHHHHHHHHHH
Q 014616 321 TLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELVGTGATFLILAGIAVLAV 378 (421)
Q Consensus 321 ~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 378 (421)
++..|..|++.++...+..+....+|+.++|...+.+.|+.++...|.+.+...++..
T Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~~~g~~~~f~~~~~~~l~~~ 365 (381)
T PRK03633 308 AWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLMQNYSDNLLFIMIASVSFIYL 365 (381)
T ss_pred HHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHH
Confidence 7778888888877777777778889999999999999999888888888777766553
|
|
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=3e-24 Score=204.07 Aligned_cols=330 Identities=13% Similarity=0.105 Sum_probs=210.4
Q ss_pred hhhhHHHHhhhhhhhcccchhHHHHHHHHHHHHHHHHHHhc-----CChhHHHHHHHHHHhhhhhhhhhHHHHHhhcCCC
Q 014616 3 LVGAIVGAASGGWINDAYGRKKATLLADVVFTAGAIIMAAA-----PDPYVLILGRLLVGLGVGIASVTAPVYIAEASPS 77 (421)
Q Consensus 3 ~ig~~~g~~~~g~l~dr~Grr~~~~~~~~l~~i~~~~~~~~-----~s~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~ 77 (421)
.++..++.++.|++.||+|+|+++.++.+++++.++.++++ +|++.+++.|++.|++ |..++.....+++|+|+
T Consensus 80 ~l~~al~rip~G~l~Dr~G~R~v~~~~~ll~~i~~~~~~~a~~~~~~s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~ 158 (462)
T PRK15034 80 SVSGALLRVPYSFMVPIFGGRRWTVFSTAILIIPCVWLGIAVQNPNTPFGIFIVIALLCGFA-GANFASSMGNISFFFPK 158 (462)
T ss_pred HHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCH
Confidence 45667888899999999999999999999999999999987 8999999999999998 77889999999999999
Q ss_pred CCccchhchHHHHHHHHHHHHHHHhhhcc-----c------------CCccchHHHHhhHHHHHHHHHH-hhcCCcChHH
Q 014616 78 EVRGGLVSTNVLMITSGQFLSYLVNLAFT-----E------------VPGTWRWMLGVSAVPAIIQFVL-MLFMPESPRW 139 (421)
Q Consensus 78 ~~rg~~~~~~~~~~~~g~~l~~~~~~~~~-----~------------~~~~Wr~~f~~~~~~~l~~~~~-~~~~~esp~~ 139 (421)
++||++.+......+.|..++.++...+. . ...+||..+++.+++.++..+. +++++|.|.
T Consensus 159 ~~rG~A~Gi~~g~G~~G~~l~~~l~p~~i~~~l~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~~~~~~~~- 237 (462)
T PRK15034 159 AKQGSALGINGGLGNLGVSVMQLVAPLVIFVPVFAFLGVNGVPQADGSVMSLANAAWIWVPLLAIATIAAWSGMNDIAS- 237 (462)
T ss_pred hHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhCCCccc-
Confidence 99999999886555555554433332111 0 0113888887777766655544 333444321
Q ss_pred HHhcCCHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHhhcccccHHHhhcchhHHHHHHHHHHHHHHHhhcCcceehhc
Q 014616 140 LFMKSDKEKAILVLSKIYDIARLEDEIDHLSAAAEEELRKKKTVRYLDVFKSKEIRLAFLAGAGLQAFQQFTGINTVMYY 219 (421)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (421)
++++..+..+.+|+|+.|...+.. ++.+.++....++
T Consensus 238 --------------------------------------~~~~~~~~~~vlk~~~~Wllslly-----~~tFG~fvg~s~~ 274 (462)
T PRK15034 238 --------------------------------------SRASIADQLPVLQRLHLWLLSLLY-----LATFGSFIGFSAG 274 (462)
T ss_pred --------------------------------------cccCHHHHHHHhCCCchhHHHHHH-----HHHHHHHHHHHHH
Confidence 000112244578888877654332 2223333334456
Q ss_pred hHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHhhHHHHHHHHHHHHHHhhCCCCCCCcchhHH
Q 014616 220 SPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGWI 299 (421)
Q Consensus 220 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 299 (421)
.|++.++ .++.... ............+..+++|+++||+|+|+.+..+.....++........ ... . ....+.
T Consensus 275 lp~~~~~-~~~~~~~-l~~~~l~~l~~~l~rplgG~LADRiG~~~vl~~~~i~~~i~~~~~~l~l--p~~-~--~~~~~~ 347 (462)
T PRK15034 275 FAMLAKT-QFPDVNI-LRLAFFGPFIGAIARSVGGAISDKFGGVRVTLINFIFMAIFSALLFLTL--PGT-G--SGNFIA 347 (462)
T ss_pred HHHHHHH-HcChHHH-HHHHHHHHHHHHHHHHhhHHHHHhcCchHHHHHHHHHHHHHHHHHHHHh--ccc-c--ccHHHH
Confidence 6777654 2222211 1112222344678889999999999999988776665555443322221 111 0 011122
Q ss_pred HHHHHHHHHHHhhcccccccceeccccCcc---------------------chhhhhhHHHHHHHHHHHHHHHHHhHHHH
Q 014616 300 AVIGLALYIAFFAPGMGPVPWTLNSEVYPE---------------------QYRGICGGMSATVNWISNLIVAQTFLTVA 358 (421)
Q Consensus 300 ~~~~~~~~~~~~~~g~~~~~~~~~~e~~p~---------------------~~r~~~~g~~~~~~~~~~~~~~~~~~~~~ 358 (421)
....+.........|.+++ +-++.+.+|+ +.-|.+.|+..+.+.+|+++.|..++...
T Consensus 348 ~~~~~~~l~~~~G~gngsv-fk~ip~~f~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~G~v~a~G~~Ggf~~p~~~g~~~ 426 (462)
T PRK15034 348 FYAVFMGLFLTAGLGSGST-FQMIAVIFRQITIYRVKMKGGSDEQAQREAVTETAAALGFISAIGAVGGFFIPQAFGMSL 426 (462)
T ss_pred HHHHHHHHHHHhcccchHH-HHhhHHHHhhhhhhcccccccchhHHhhHHHHHHHHHHHHHHHHHHcccchhhHHHHHHH
Confidence 2222211112222233222 3345566663 14567788888999999999999988888
Q ss_pred HHcC-cchhhHHHHHHHHHHHHHHHhhc
Q 014616 359 ELVG-TGATFLILAGIAVLAVVFVILFV 385 (421)
Q Consensus 359 ~~~g-~~~~~~~~~~~~~~~~~~~~~~~ 385 (421)
+..| +...|+.+.+..+++.++.|.+.
T Consensus 427 ~~~g~~~~~~~~~~~~~~~~~~~~w~~y 454 (462)
T PRK15034 427 NMTGSPVGAMKVFLIFYIVCVLLTWLVY 454 (462)
T ss_pred HHcCCcHHHHHHHHHHHHHHHHHHHHHh
Confidence 7766 44678888888888877777653
|
|
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.7e-24 Score=208.31 Aligned_cols=337 Identities=14% Similarity=0.091 Sum_probs=218.8
Q ss_pred HHHhhhhhhhccc-----chhHH-HHHHHHHHHHHHHHHHhc---CChhHHHHHHHHHHhhhhhhhhhHHHHHhhcCCCC
Q 014616 8 VGAASGGWINDAY-----GRKKA-TLLADVVFTAGAIIMAAA---PDPYVLILGRLLVGLGVGIASVTAPVYIAEASPSE 78 (421)
Q Consensus 8 ~g~~~~g~l~dr~-----Grr~~-~~~~~~l~~i~~~~~~~~---~s~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~ 78 (421)
++.+++|+++||+ |||+. +..+.+..+++..++++. ++++.+.+.|+++|++.+...+...+++.|++|+|
T Consensus 60 ~~~~l~gpl~Dr~~~~~~Grrr~~ll~~~i~~~~~~~~~a~~~~~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~ 139 (491)
T PRK11010 60 VFKFLWSPLMDRYTPPFLGRRRGWLLATQLLLLVAIAAMGFLEPGTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAE 139 (491)
T ss_pred HHHHHHHHHHHcccccCCCCchHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChh
Confidence 6788999999999 99986 667777777777777775 36778889999999999999999999999999999
Q ss_pred CccchhchHHHHHHHHHHHHHHHhhhcccCCccchHHHHhhHHHHHHHHHHhhcCCcChHHHHhcCCHHHHHHHHHHhcC
Q 014616 79 VRGGLVSTNVLMITSGQFLSYLVNLAFTEVPGTWRWMLGVSAVPAIIQFVLMLFMPESPRWLFMKSDKEKAILVLSKIYD 158 (421)
Q Consensus 79 ~rg~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~Wr~~f~~~~~~~l~~~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~ 158 (421)
+|++..+....+...|.++++.+...+.....+||..|++.++..++..+..++.||+++.. ++++.
T Consensus 140 ~rg~~~~i~~~g~~lG~llg~~l~~~l~~~~~GWr~~f~i~a~l~ll~~l~~~~~~e~~~~~----~~~~~--------- 206 (491)
T PRK11010 140 ERGAGAAISVLGYRLAMLVSGGLALWLADRYLGWQGMYWLMAALLIPCIIATLLAPEPTDTI----PVPKT--------- 206 (491)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHhcCCCcccc----ccccc---------
Confidence 99999999999999999988877776655333699999998887777666655678865311 00000
Q ss_pred hhhhHHHHHHHHHHHHHHHhhcccccHHHhhcchhHHHHHHHHHHHHHHHhhcCcceehhchHHHHHHcCCCChHHHHHH
Q 014616 159 IARLEDEIDHLSAAAEEELRKKKTVRYLDVFKSKEIRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQMAGFQSNQLALLL 238 (421)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 238 (421)
.++ +...++++.+++++.+............ . .....+..|++.++.|++..+.+...
T Consensus 207 --------------~~~----~~~~~l~~~~~~~~~~~~ll~~~l~~~~-~---~~~~~~~~~~l~~~~G~s~~~~g~~~ 264 (491)
T PRK11010 207 --------------LEQ----AVVAPLRDFFGRNNAWLILLLIVLYKLG-D---AFAMSLTTTFLIRGVGFDAGEVGLVN 264 (491)
T ss_pred --------------hhh----hHHHHHHHHHcCcCHHHHHHHHHHHHHH-H---HHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence 000 0001233455555544433222211111 1 11112334444566898888877665
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCChhHHHHhhHHHHHHHHHHHHHHhhCCCCCCCcchhHHHHHHHHHHHHHhhcccccc
Q 014616 239 SLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLALYIAFFAPGMGPV 318 (421)
Q Consensus 239 ~~~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 318 (421)
........++|.+++|+++||+++|+.+........+....+....... . .. +.......+.......+. +.
T Consensus 265 ~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l~~l~~~~l~~~~----~-~~--~~l~~~~~l~~~~~g~~~-~~ 336 (491)
T PRK11010 265 KTLGLLATIVGALYGGILMQRLSLFRALMIFGILQGVSNAGYWLLSITD----K-NL--YSMGAAVFFENLCGGMGT-AA 336 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcc----c-cH--HHHHHHHHHHHHHHHHHH-HH
Confidence 4444445789999999999999998876544433333322221111110 0 11 111111111000001111 22
Q ss_pred cceeccccCccchhhhhhHHHHHHHHHHHHHHHHHhHHHHHHcCcchhhHHHHHHHHHHHHHHHhhccCC
Q 014616 319 PWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELVGTGATFLILAGIAVLAVVFVILFVPET 388 (421)
Q Consensus 319 ~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~et 388 (421)
.++...+..|++.+++..++.++...+++.+.+...+.+.+..|+...|.+.+..++.+.+..... +++
T Consensus 337 ~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~~~G~~~~f~~~~~~~l~~l~~~~~~-~~~ 405 (491)
T PRK11010 337 FVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVEAHGWPTFYLFSVAAAVPGLLLLLVC-RQT 405 (491)
T ss_pred HHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHH-Hhc
Confidence 356677888999999999999999999998888888999998898877777777777765555443 443
|
|
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.8e-24 Score=205.29 Aligned_cols=307 Identities=17% Similarity=0.186 Sum_probs=199.8
Q ss_pred chhhhHHHHhhhhhhhcccchhHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHhhhhhhhhhHHHHHhhcCCCCCcc
Q 014616 2 ALVGAIVGAASGGWINDAYGRKKATLLADVVFTAGAIIMAAAPDPYVLILGRLLVGLGVGIASVTAPVYIAEASPSEVRG 81 (421)
Q Consensus 2 ~~ig~~~g~~~~g~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~s~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg 81 (421)
..++..+++++.|+++||+|||+++..+.++..++..+++++++++.+++.|+++|++.+...+....++.|++|+++|+
T Consensus 50 ~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~ 129 (401)
T PRK11043 50 FLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLWVESAAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQKAN 129 (401)
T ss_pred HHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHHHH
Confidence 45788999999999999999999999999999999999999999999999999999999888888888999999999988
Q ss_pred chhchHHHHHHHHHHHHHHHhhhcccCCccchHHHHhhHHHHHHHHHHhhcCCcChHHHHhcCCHHHHHHHHHHhcChhh
Q 014616 82 GLVSTNVLMITSGQFLSYLVNLAFTEVPGTWRWMLGVSAVPAIIQFVLMLFMPESPRWLFMKSDKEKAILVLSKIYDIAR 161 (421)
Q Consensus 82 ~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~Wr~~f~~~~~~~l~~~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~ 161 (421)
+..+........+..+++.++..+.+.. +||+.|++.++..++..+..++++|+++. ++++
T Consensus 130 ~~~~~~~~~~~~~~~~g~~i~~~l~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~-------------- 190 (401)
T PRK11043 130 RVFATIMPLVALSPALAPLLGAWLLNHF-GWQAIFATLFAITLLLILPTLRLKPSKKA----RKQS-------------- 190 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHHHHHcCCCCCc----cccc--------------
Confidence 8877777677777778887776665544 59999998887777665555555554320 0000
Q ss_pred hHHHHHHHHHHHHHHHhhcccccHHHhhcchhHHHHHHHHHHHHHHHhhcCcceehhchHHHHHHcCCCChHHHHHHHHH
Q 014616 162 LEDEIDHLSAAAEEELRKKKTVRYLDVFKSKEIRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQMAGFQSNQLALLLSLA 241 (421)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 241 (421)
++..++++.+++++.+........... .......+.|.+.++.|.+..+.+... ..
T Consensus 191 ------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~p~~~~~~g~s~~~~g~~~-~~ 246 (401)
T PRK11043 191 ------------------QDALTFKQLLKSKTYLGNVLIFAACSA-----AFFAWLTGSPFILEQMGYSPADIGLSY-VP 246 (401)
T ss_pred ------------------hHHHHHHHHHcChhHHHHHHHHHHHHH-----HHHHHHHHhHHHHHHcCCCHHHHHHHH-HH
Confidence 000123445666655432222111100 111122345677777888776665543 33
Q ss_pred HHHHHHHHHHHHHHHHhhcCChhHHHHhhHHHHHHHHHHHHHHhhCCCCCCCcchhHHHHHHHHHHHHHhhcccccccce
Q 014616 242 VAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLALYIAFFAPGMGPVPWT 321 (421)
Q Consensus 242 ~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 321 (421)
......+|..+++++.||+++|+..........++...+......... .. +......... .+......+...+
T Consensus 247 ~~~~~~~g~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~--~~~~~~~~~~-~~~~~~~~~~~~~ 319 (401)
T PRK11043 247 QTIAFLVGGYGCRAALQKWGGEQLLPWLLVLFAVSVIAIWLASLLSHP----SL--VPLLIPFCVM-AAANGAIYPIVVA 319 (401)
T ss_pred HHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHhccC----cH--HHHHHHHHHH-HHHHHHHHHHHHH
Confidence 444567888889999999998886544433333333222211111110 11 1111111111 1112223344444
Q ss_pred eccccCccchhhhhhHHHHHHHHHHHHHHHHHhHHHHH
Q 014616 322 LNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAE 359 (421)
Q Consensus 322 ~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~ 359 (421)
...|..| +.|+.+.|+.++.+..++..++...+.+.+
T Consensus 320 ~~~~~~~-~~~g~~~g~~~~~~~~~~~~~~~~~g~l~~ 356 (401)
T PRK11043 320 QALRPFP-QATGKAAALQNTLQLGLCFLASLLVSALIS 356 (401)
T ss_pred HHhhhCc-ccChHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 5556666 469999999999988888888877776655
|
|
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=7.1e-24 Score=202.78 Aligned_cols=314 Identities=17% Similarity=0.245 Sum_probs=196.4
Q ss_pred hhhhHHHHhhhhhhhcccchhHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHhhhhhhhhhHHHHHhhcCCCCCccc
Q 014616 3 LVGAIVGAASGGWINDAYGRKKATLLADVVFTAGAIIMAAAPDPYVLILGRLLVGLGVGIASVTAPVYIAEASPSEVRGG 82 (421)
Q Consensus 3 ~ig~~~g~~~~g~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~s~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg~ 82 (421)
.++..+++++.|+++||+|||+++..+.+++.++..++.+++|++.+++.|+++|++.+...+....++.|++|+++|++
T Consensus 48 ~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~ 127 (392)
T PRK10473 48 LAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLCSLAETSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRRRAK 127 (392)
T ss_pred HHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHHHHH
Confidence 56888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhchHHHHHHHHHHHHHHHhhhcccCCccchHHHHhhHHHHHHHHHH-hhcCCcChHHHHhcCCHHHHHHHHHHhcChhh
Q 014616 83 LVSTNVLMITSGQFLSYLVNLAFTEVPGTWRWMLGVSAVPAIIQFVL-MLFMPESPRWLFMKSDKEKAILVLSKIYDIAR 161 (421)
Q Consensus 83 ~~~~~~~~~~~g~~l~~~~~~~~~~~~~~Wr~~f~~~~~~~l~~~~~-~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~ 161 (421)
..+........|..+++.++..+.... +||+.|++.++..++..+. ...+||++... +++++
T Consensus 128 ~~~~~~~~~~i~~~~~~~i~~~l~~~~-g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~--~~~~~-------------- 190 (392)
T PRK10473 128 VLSLLNGITCIIPVLAPVLGHLIMLKF-PWQSLFYTMAAMGILVLLLSLFILKETRPAR--APAAS-------------- 190 (392)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCc-ChHHHHHHHHHHHHHHHHHHHHHcCCCCCcc--cCCcc--------------
Confidence 999888888888888888776654444 5999999988766655444 45567764210 00000
Q ss_pred hHHHHHHHHHHHHHHHhhcccccHHHhhcchhHHHHHHHHHHHHHHHhhcCcceehhchHHHH-HHcCCCChHHHHHHHH
Q 014616 162 LEDEIDHLSAAAEEELRKKKTVRYLDVFKSKEIRLAFLAGAGLQAFQQFTGINTVMYYSPTIV-QMAGFQSNQLALLLSL 240 (421)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~ 240 (421)
. .....++.+++++.+............. .....+.|.+. ++.|.+..+.+.....
T Consensus 191 -------------~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 247 (392)
T PRK10473 191 -------------S-----KPRENSESLLNRFFLSRLVITTLSVTVI-----LTFVNTSPVLLMEQMGFSRGEYAIIMAL 247 (392)
T ss_pred -------------c-----hHHHHHHHHhCHHHHHHHHHHHHHHHHH-----HHHHHhCHHHHHHHcCCCHHHHHHHHHH
Confidence 0 0001123455555443322221111110 11112334444 4568877665554444
Q ss_pred HHHHHHHHHHHHHHHHHhhcCChhHHHHhhHHHHHHHHHHHHHHhhCCCCCCCcchhHHHHHHHHHHHHHhhcccccccc
Q 014616 241 AVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLALYIAFFAPGMGPVPW 320 (421)
Q Consensus 241 ~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 320 (421)
. ....+++.++.+++.||++||+....+.....++.+.+..... . ................+. +.
T Consensus 248 ~-~~~~i~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~----------~-~~~~~~~~l~~~g~~~~~-~~-- 312 (392)
T PRK10473 248 T-AGVSMTVSFSTPFALGIFKPRTLMLTSQVLFLAAGITLALSPS----------H-AVSLFGITLICAGFSVGF-GV-- 312 (392)
T ss_pred H-HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHH----------H-HHHHHHHHHHHHHHHHHh-HH--
Confidence 3 4447888999999999999999877666555544444332110 0 011111111111111111 11
Q ss_pred eeccccCccchhhhhhHHHHHHHHHHHHHHHHHhHHHHHHcCcchhhHHHHHHH
Q 014616 321 TLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELVGTGATFLILAGIA 374 (421)
Q Consensus 321 ~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 374 (421)
....+..|.+.|+ |..++...++..+++.+.+.+.+..|+.......+...
T Consensus 313 ~~~~~~~~~~~~~---g~~~~~~~~~~~~g~~~~~~l~~~~g~~~~~~~~~~~~ 363 (392)
T PRK10473 313 AMSQALGPFSLRA---GVASSTLGIAQVCGSSLWIWLAAVLGISAWNMLIGILI 363 (392)
T ss_pred HHHHHhccCcccc---cHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHH
Confidence 2234444554443 33444455666666667777777777654444444333
|
|
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.9e-25 Score=207.39 Aligned_cols=307 Identities=25% Similarity=0.416 Sum_probs=203.1
Q ss_pred hhhhHHHHhhhhhhhcccchhHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHhhhhhhhhhHHHHHhhcCCCCCccc
Q 014616 3 LVGAIVGAASGGWINDAYGRKKATLLADVVFTAGAIIMAAAPDPYVLILGRLLVGLGVGIASVTAPVYIAEASPSEVRGG 82 (421)
Q Consensus 3 ~ig~~~g~~~~g~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~s~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg~ 82 (421)
.++..+++++.|+++||+|||+++..+.++.+++..+..+++|.+.+++.|+++|++.+...+....++.|++|+|+|++
T Consensus 42 ~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~ 121 (352)
T PF07690_consen 42 FLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLLAFASNFWLLLIARFLLGIGSGFFSPASNALIADWFPPEERGR 121 (352)
T ss_dssp HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHhhhhhhHHHHhhhccccccccccccccccccccccchhhhhhh
Confidence 56889999999999999999999999999999997777777888899999999999999999999999999999999999
Q ss_pred hhchHHHHHHHHHHHHHHHhhhcccCCccchHHHHhhHHHHHHHHHH-hhcCCcChHHHHhcCCHHHHHHHHHHhcChhh
Q 014616 83 LVSTNVLMITSGQFLSYLVNLAFTEVPGTWRWMLGVSAVPAIIQFVL-MLFMPESPRWLFMKSDKEKAILVLSKIYDIAR 161 (421)
Q Consensus 83 ~~~~~~~~~~~g~~l~~~~~~~~~~~~~~Wr~~f~~~~~~~l~~~~~-~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~ 161 (421)
..+........|..+++.++..+.... +||+.|++.++..++..+. ..+.+++|+....++++++.
T Consensus 122 ~~~~~~~~~~~g~~~g~~l~~~l~~~~-~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~------------ 188 (352)
T PF07690_consen 122 AFGILSAGFSLGSILGPLLGGFLISYF-GWRWAFLISAILSLIAAILFILFLPEPPPPRERESPKESE------------ 188 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCCHC-HHCCHHHHHHHHHHHHHHHHHCCC---STTTT--SSTTTT------------
T ss_pred ccccccchhhhhhhcccchhhhhhhcc-ccccccccccchhhhhhhhHhhhhhhcccccccccccccc------------
Confidence 999999999999999999988777544 4999999998888776654 34555544322211111100
Q ss_pred hHHHHHHHHHHHHHHHhhccccc-HHHhhcchhHHHHHHHHHHHHHHHhhcCcceehhchHHH-HHHcCCC-ChHHHHHH
Q 014616 162 LEDEIDHLSAAAEEELRKKKTVR-YLDVFKSKEIRLAFLAGAGLQAFQQFTGINTVMYYSPTI-VQMAGFQ-SNQLALLL 238 (421)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~-~~~~~~~~ 238 (421)
+.++++..+ ++...+++..+....... ... ........+.|.+ .+..|.+ ..+.+...
T Consensus 189 --------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 249 (352)
T PF07690_consen 189 --------------SKKPKPLKPGFKSLFKNPVLWILLIAFF-LFF----FVFSGFSFFLPLYLQEVLGFSGPSQAGLLF 249 (352)
T ss_dssp ----------------HHHCCCH-CTHHHHHHCCHHHHHHHH-HHH----HHHHHHHHHHHHHCCHHHHCCTHHHHHHHH
T ss_pred --------------cccccccccccccccccchhhhhhhhhh-HHH----HHHHHhhcccchhhhhccCCCHHHHHHHHH
Confidence 001111112 445555665542222111 111 1122234456666 4667777 45555444
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCChhHHHHhhHHHHHHHHHHHHHHhhCCCCCCCcchhHHHHHHHHHHHHHhhcccccc
Q 014616 239 SLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLALYIAFFAPGMGPV 318 (421)
Q Consensus 239 ~~~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 318 (421)
.... ...+++.++.+++.||+++|+..........+....+...... ....+... ...+ ..+......+.
T Consensus 250 ~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~-~~~~-~g~~~~~~~~~ 319 (352)
T PF07690_consen 250 SIFG-IVGIIGSLLAGRLSDRFGRRRRLLIAILLLILGALGLLLLPFS-------SSPVWLII-ALFL-IGFGFGIVFPI 319 (352)
T ss_dssp HHHH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCSHHH-------CHHHHHHH-HHHH-HHHHHHHHCHH
T ss_pred HHHH-HHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHh-------hhHHHHHH-HHHH-HHHHHHHHHHH
Confidence 4443 4467789999999999998776655444433333332211100 01111111 1111 12222223566
Q ss_pred cceeccccCccchhhhhhHHHHHHHHHHHHHHH
Q 014616 319 PWTLNSEVYPEQYRGICGGMSATVNWISNLIVA 351 (421)
Q Consensus 319 ~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~ 351 (421)
..++..|.+|++.|+++.|+.++.+.+++.++|
T Consensus 320 ~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~igP 352 (352)
T PF07690_consen 320 LFSLIQELVPPEYRGTAFGLFNSIGSLGGIIGP 352 (352)
T ss_dssp HHHHHHCCCHTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence 678889999999999999999999999988765
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.2e-23 Score=201.73 Aligned_cols=336 Identities=13% Similarity=0.081 Sum_probs=208.3
Q ss_pred chhhhHHHHhhhhhhhcccchhHHHHHHHHHHHHHHHHHH---h-cCChhHHHHHHHHHHhhhhhhhhhHHHHHhhcCCC
Q 014616 2 ALVGAIVGAASGGWINDAYGRKKATLLADVVFTAGAIIMA---A-APDPYVLILGRLLVGLGVGIASVTAPVYIAEASPS 77 (421)
Q Consensus 2 ~~ig~~~g~~~~g~l~dr~Grr~~~~~~~~l~~i~~~~~~---~-~~s~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~ 77 (421)
..++..+++++.|+++||+|||+++..+.++++++++++. + .+|++.+++.|+++|+|.+...+.....+.|+.|+
T Consensus 57 ~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~G~g~~~~~~~~~~~~~~~~~~ 136 (402)
T TIGR00897 57 YGIAAAISAWISGVVAEIIGPLKTMMIGLLLWCVGHAAFIVFGLGHANYPLILLFYGIRGLGYPLFAYSFLVWVVYNTKQ 136 (402)
T ss_pred HHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHcchHHHHhHHHHHHHHhCCH
Confidence 3568899999999999999999999999999999887653 3 35788899999999999998888888889999999
Q ss_pred CCccchhchHHHHHHHHH-HHHHHHhhhcccCCccchHHHHhhHHHHHHHHH-HhhcCCcChHHHHhcCCHHHHHHHHHH
Q 014616 78 EVRGGLVSTNVLMITSGQ-FLSYLVNLAFTEVPGTWRWMLGVSAVPAIIQFV-LMLFMPESPRWLFMKSDKEKAILVLSK 155 (421)
Q Consensus 78 ~~rg~~~~~~~~~~~~g~-~l~~~~~~~~~~~~~~Wr~~f~~~~~~~l~~~~-~~~~~~esp~~~~~~~~~~~~~~~~~~ 155 (421)
|+|+++.+........|. ..++.++..+.... +|+..++.......+..+ ..++.+|.++... ++++++
T Consensus 137 ~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~------- 207 (402)
T TIGR00897 137 DNLSSAVGWFWAVYSIGIGVFGSYYSSYAIPAF-GEMNTLWSALAFVLTGGVIALFSNKDIFTPQH-MQTREK------- 207 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-chHHHHHHHHHHHHHHHHHHHhccCCCCCccc-ccCCcc-------
Confidence 999999999888888886 56777665544433 355444433322222222 2233344321000 000000
Q ss_pred hcChhhhHHHHHHHHHHHHHHHhhcccccHHHhhcchhHHHHHHHHHHHHHHHhhcCcceehhchHHHHHHcCCCChHHH
Q 014616 156 IYDIARLEDEIDHLSAAAEEELRKKKTVRYLDVFKSKEIRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQMAGFQSNQLA 235 (421)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 235 (421)
. . +....+++++|+|.++........ .....+....+.|.+.++.|.+..+.+
T Consensus 208 -------------~-----~----~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~p~~~~~~g~s~~~~~ 260 (402)
T TIGR00897 208 -------------F-----S----ELGKAATILFTNPNVLLGGMVRII-----NTIGLFGFAVFLPMFVAELGFSTSEWL 260 (402)
T ss_pred -------------h-----h----hHHHHHHHHHcChhHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHcCCChhHHH
Confidence 0 0 000123356777776544332211 112223334567888888888877765
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHH-hhHHHHHHHHHHHHHHhhCCCCCCCcchhHHHHHHHHHHHHHhhcc
Q 014616 236 LLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALS-SLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLALYIAFFAPG 314 (421)
Q Consensus 236 ~~~~~~~~~~~~~g~~~~g~l~dr~grr~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 314 (421)
...... .....++.+..|+++||++||+.... ......++...+... .....+ . . +.......... +...+
T Consensus 261 ~~~~~~-~~~~~ig~~~~g~l~dr~~~~~~~~~~~~l~~~~~~~~l~~~--~~~~~~--~-~-~~~~~~~~~~G-~~~~~ 332 (402)
T TIGR00897 261 QIWGTF-FFTNIVFNVIFGIVGDKLGWMNTVRWFGGVGCGIFTLALYYI--PQHFGH--S-F-AVALIIAIALG-IFLAG 332 (402)
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHH--HHccCC--c-H-HHHHHHHHHHH-HHHHH
Confidence 555444 34578999999999999998876532 222222221111111 100000 1 1 11111111111 11111
Q ss_pred cccccceeccccCccchhhhhhHHHHHHHHHHHHHHHHHhHHHHHHcCcchhhHHHHHHHHHHHHHHHh
Q 014616 315 MGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELVGTGATFLILAGIAVLAVVFVIL 383 (421)
Q Consensus 315 ~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 383 (421)
..+. .....|..| +.|+++.|+.+....+++.++|.+.+.+.+..|+...+++.++..++..++..+
T Consensus 333 ~~~~-~~~~~~~~~-~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~g~~~~~~~~a~~~~i~~~~~~~ 399 (402)
T TIGR00897 333 YVPL-AAVFPTLAP-KHKGAAMSVLNLSAGLSAFLAPAIAVLFIGFFGAIGVVWIFAALYVVSAFLTAF 399 (402)
T ss_pred HHHH-HHHHHhhCc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHH
Confidence 2232 233456544 589999999999999999999999999999989888888888777776555543
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.1e-24 Score=206.36 Aligned_cols=330 Identities=17% Similarity=0.124 Sum_probs=210.8
Q ss_pred hhhhHHHHhhhhhhhcccchhHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHhhhhhhhhhHHHHHhhcCCCCCccc
Q 014616 3 LVGAIVGAASGGWINDAYGRKKATLLADVVFTAGAIIMAAAPDPYVLILGRLLVGLGVGIASVTAPVYIAEASPSEVRGG 82 (421)
Q Consensus 3 ~ig~~~g~~~~g~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~s~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg~ 82 (421)
.++..+++++.|+++||+|||+++..+.++.+++.+++++.+|++.+++.|++.|++.+ ..+....++.|+.|+++|++
T Consensus 64 ~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~ 142 (408)
T PRK09874 64 FLFSAIASPFWGGLADRKGRKIMLLRSALGMGIVMVLMGLAQNIWQFLILRALLGLLGG-FVPNANALIATQVPRNKSGW 142 (408)
T ss_pred HHHHHHHHHHHHHHhhhhCcHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhh-hHHhHHHHHHHhcCHhhhhH
Confidence 45678889999999999999999999999999999999999999999999999999865 45677788999999999999
Q ss_pred hhchHHHHHHHHHHHHHHHhhhcccCCccchHHHHhhHHHHHHHHHH-hhcCCcChHHHHhcCCHHHHHHHHHHhcChhh
Q 014616 83 LVSTNVLMITSGQFLSYLVNLAFTEVPGTWRWMLGVSAVPAIIQFVL-MLFMPESPRWLFMKSDKEKAILVLSKIYDIAR 161 (421)
Q Consensus 83 ~~~~~~~~~~~g~~l~~~~~~~~~~~~~~Wr~~f~~~~~~~l~~~~~-~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~ 161 (421)
..+........|..+++.++..+.... +||+.|++.++..++..+. ..++||.++.. ++++.
T Consensus 143 ~~~~~~~~~~~g~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~------------ 205 (408)
T PRK09874 143 ALGTLSTGGVSGALLGPLAGGLLADSY-GLRPVFFITASVLFLCFLVTLFCIRENFQPV----SKKEM------------ 205 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh-CHHHHHHHHHHHHHHHHHHHHHHhccCcccc----cchhh------------
Confidence 999888888888888888777665444 5999999888766655444 34456653210 00000
Q ss_pred hHHHHHHHHHHHHHHHhhcccccHHHhhcchhHHHHHHHHHHHHHHHhhcCcceehhchHHHHHHcCCCChHHH---HHH
Q 014616 162 LEDEIDHLSAAAEEELRKKKTVRYLDVFKSKEIRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQMAGFQSNQLA---LLL 238 (421)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~---~~~ 238 (421)
. + . .+..+.+++++.+............. ......+.|.+.++.+.+..+.+ ...
T Consensus 206 -----~-------~---~---~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 263 (408)
T PRK09874 206 -----L-------H---M---REVVTSLKNPKLVLSLFVTTLIIQVA----TGSIAPILTLYVRELAGNVSNIAFISGMI 263 (408)
T ss_pred -----h-------H---H---HHHHHhCcCCchHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 0 0 0 00112344554433222111111110 11111223444444333322221 122
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCChhHHHHhhHHHHHHHHHHHHHHhhCCCCCCCcchhHHHHHHHHHHHHHhhcccccc
Q 014616 239 SLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLALYIAFFAPGMGPV 318 (421)
Q Consensus 239 ~~~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 318 (421)
.........++.+..|+++||++||+....+.....++.+..... . + . +.......+. .+......+.
T Consensus 264 ~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~----~--~---~--~~~~~~~~~~-g~~~~~~~~~ 331 (408)
T PRK09874 264 ASVPGVAALLSAPRLGKLGDRIGPEKILITALIFSVLLLIPMSFV----Q--T---P--LQLGILRFLL-GAADGALLPA 331 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHh----c--c---H--HHHHHHHHHH-HhhhHhhHHH
Confidence 222233356777888999999999988776554443333222111 0 0 0 1111111111 1111122344
Q ss_pred cceeccccCccchhhhhhHHHHHHHHHHHHHHHHHhHHHHHHcCcchhhHHHHHHHHHHHHHHHhh
Q 014616 319 PWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELVGTGATFLILAGIAVLAVVFVILF 384 (421)
Q Consensus 319 ~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 384 (421)
..+...+..|++.|++..+..+....++..+++.+.+.+.+..|+...|.+.+++.++..+.....
T Consensus 332 ~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~ 397 (408)
T PRK09874 332 VQTLLVYNSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISANYGFRAVFLVTAGVVLFNAVYSWNS 397 (408)
T ss_pred HHHHHHHhCCcccceeeehHHHHHHHHHHHhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHH
Confidence 445556778889999999999999999999999999988888898888998888888776665543
|
|
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=8.8e-24 Score=201.75 Aligned_cols=329 Identities=16% Similarity=0.048 Sum_probs=205.4
Q ss_pred chhhhHHHHhhhhhhhcccchhHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHhhhhhhhhhHHHHHhhcCCCCCcc
Q 014616 2 ALVGAIVGAASGGWINDAYGRKKATLLADVVFTAGAIIMAAAPDPYVLILGRLLVGLGVGIASVTAPVYIAEASPSEVRG 81 (421)
Q Consensus 2 ~~ig~~~g~~~~g~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~s~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg 81 (421)
..+++.+.+++.|+++||+|||+++.++.+++++++++++++.++ ++.|+++|++.+...|...+++.|++|+|+|+
T Consensus 47 ~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~~~~~~~~---~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~~~ 123 (393)
T PRK11195 47 FVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCLLMLFGIHP---LLAYGLVGIGAAAYSPAKYGILTELLPGEKLV 123 (393)
T ss_pred HHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHH
Confidence 457889999999999999999999999999999999988877664 78999999999999999999999999999999
Q ss_pred chhchHHHHHHHHHHHHHHHhhhcccCCccchHHHHhhHHHHHHHHHHhhcCCcChHHHHhcCCHHHHHHHHHHhcChhh
Q 014616 82 GLVSTNVLMITSGQFLSYLVNLAFTEVPGTWRWMLGVSAVPAIIQFVLMLFMPESPRWLFMKSDKEKAILVLSKIYDIAR 161 (421)
Q Consensus 82 ~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~Wr~~f~~~~~~~l~~~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~ 161 (421)
++.+........|.++|+.+++.+.+. .|+..+.+.+...++..+....+||+|.....+++++..
T Consensus 124 ~a~~~~~~~~~~~~~~Gp~lgG~l~~~--~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~------------ 189 (393)
T PRK11195 124 KANGWMEGSTIAAILLGTVLGGALADP--HAEAALAVCALIYLLAALFNLFIPRLGARRPGQSWNPIA------------ 189 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhcCCCCcccccccCCCHHH------------
Confidence 999999888888999999888776553 277777766655444445556778876421111100000
Q ss_pred hHHHHHHHHHHHHHHHhhcccccHHHhhcchhHHHHHHHHHHHHHHHhhcCcceehhchHHHHH-HcCCCChHHHHHHHH
Q 014616 162 LEDEIDHLSAAAEEELRKKKTVRYLDVFKSKEIRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQ-MAGFQSNQLALLLSL 240 (421)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~ 240 (421)
...+. . ..++.++++|..+......... .. ......+..|.+.+ ..|.+..+.+.....
T Consensus 190 ---~~~~~--------~----~~~~~l~~~~~~~~~~~~~~~~-~~----~~~~~~~~~~~~~~~~lg~s~~~~G~~~~~ 249 (393)
T PRK11195 190 ---LLRDF--------F----HACRVLWRDKLGRFSLAGTTLF-WG----AGATLRFLVLAWAPVALGITLNQPAYLQAV 249 (393)
T ss_pred ---HHHHH--------H----HHHHHHHhCchhHHHHHHHHHH-HH----HHHHHHHHHHHHHHHHcCCChhHHHHHHHH
Confidence 00000 0 0123456666554433222111 11 11112233344444 468877776665544
Q ss_pred HHHHHHHHHHHHHHHHHhhcCChhHHHHhhHHHHHHHHHHHHHHhhCCCCCCCcchhHHHHHHHHHHHHHhhcccccccc
Q 014616 241 AVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLALYIAFFAPGMGPVPW 320 (421)
Q Consensus 241 ~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 320 (421)
. ..+.++++++.+++.||.++|+....+... .+. .+.... . . ..+.......... +......+...
T Consensus 250 ~-~~g~i~g~~~~~~l~~~~~~~~~~~~g~~~-~~~--~~~~~~-~-~-------~~~~~~~~~~~~G-~~~g~~~~~~~ 315 (393)
T PRK11195 250 V-AIGIAVGAGAAARLVTLETVLRVLPAGILM-GLV--VLLMAL-Q-H-------SLLPAYPLLILIG-ALGGFFVVPMN 315 (393)
T ss_pred H-HHHHHHHHHHHHHHhcCCcccchHHHHHHH-HHH--HHHHHH-H-h-------HHHHHHHHHHHHH-HhhhhhhhhHH
Confidence 4 445788999999999998888765544322 111 111111 0 0 0111111111111 11111122334
Q ss_pred eeccccCccch-hhhhhHHHHHHHHHHHHHHHHHhHHHHHHcCcchhhHHHHHHHHHHHHHHH
Q 014616 321 TLNSEVYPEQY-RGICGGMSATVNWISNLIVAQTFLTVAELVGTGATFLILAGIAVLAVVFVI 382 (421)
Q Consensus 321 ~~~~e~~p~~~-r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 382 (421)
+...|..|++. +|.+.++.++.++++..++..+...+ +..|....+++.+...+....+.+
T Consensus 316 ~~~q~~~~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 377 (393)
T PRK11195 316 ALLQHRGHVLVGAGHSIAVQNFNENLAMLLMLGLYSLL-VKLGVPVVAVIVGFGLLVALAMAL 377 (393)
T ss_pred HHHHhhCcccccchhHHHHHhHHHHHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHH
Confidence 45566656554 79999999999999988887776644 566766666655555554444433
|
|
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.2e-23 Score=197.65 Aligned_cols=304 Identities=29% Similarity=0.444 Sum_probs=224.9
Q ss_pred hhhhHHHHhhhhhhhcccchhHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHhhhhhhhhhHHHHHhhcCCCCCccc
Q 014616 3 LVGAIVGAASGGWINDAYGRKKATLLADVVFTAGAIIMAAAPDPYVLILGRLLVGLGVGIASVTAPVYIAEASPSEVRGG 82 (421)
Q Consensus 3 ~ig~~~g~~~~g~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~s~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg~ 82 (421)
.++..++.++.|+++||+|||+.+.++.++..++.....+.++++.+++.|+++|++.+...+....++.|++|+|+|++
T Consensus 44 ~~~~~~~~~~~g~~~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (352)
T cd06174 44 SLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLAFASSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGR 123 (352)
T ss_pred HHHHHHHHHhHHHHHHHhCCchhhHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHcccccccHhHHHHHHHhCCccchhh
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhchHHHHHHHHHHHHHHHhhhcccCCccchHHHHhhHHHHHHHHHHhhcCCcChHHHHhcCCHHHHHHHHHHhcChhhh
Q 014616 83 LVSTNVLMITSGQFLSYLVNLAFTEVPGTWRWMLGVSAVPAIIQFVLMLFMPESPRWLFMKSDKEKAILVLSKIYDIARL 162 (421)
Q Consensus 83 ~~~~~~~~~~~g~~l~~~~~~~~~~~~~~Wr~~f~~~~~~~l~~~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (421)
..+........|..+++.++..+.+.. +||+.+++.++..++..+...+.+
T Consensus 124 ~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~---------------------------- 174 (352)
T cd06174 124 ALGLFSAGFGLGALLGPLLGGLLAESL-GWRWLFLILAILGLLLALLLLFLL---------------------------- 174 (352)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHHHHHHH----------------------------
Confidence 999999999999999988887765544 499999988876666554432211
Q ss_pred HHHHHHHHHHHHHHHhhcccccHHHhhcchhHHHHHHHHHHHHHHHhhcCcceehhchHHHHHHc-CCCChHHHHHHHHH
Q 014616 163 EDEIDHLSAAAEEELRKKKTVRYLDVFKSKEIRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQMA-GFQSNQLALLLSLA 241 (421)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~ 241 (421)
|.++...... +...........+.|.+.++. |.+..+.+.....
T Consensus 175 -----------------------------~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 219 (352)
T cd06174 175 -----------------------------RLLLLLALAF-----FLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSL- 219 (352)
T ss_pred -----------------------------HHHHHHHHHH-----HHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHH-
Confidence 1111111111 111112222334556666554 7776666555444
Q ss_pred HHHHHHHHHHHHHHHHhhcCChh-HHHHhhHHHHHHHHHHHHHHhhCCCCCCCcchhHHHHHHHHHHHHHhhcccccccc
Q 014616 242 VAGTNAVGTIVGIYLIDHFGRKK-LALSSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLALYIAFFAPGMGPVPW 320 (421)
Q Consensus 242 ~~~~~~~g~~~~g~l~dr~grr~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 320 (421)
......++.++.+++.||.+||+ ....+.....++...+... .+ .+.... ......+......+...
T Consensus 220 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~------~~-----~~~~~~-~~~~~g~~~~~~~~~~~ 287 (352)
T cd06174 220 FGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALA------PS-----LALLLV-ALLLLGFGLGFAFPALL 287 (352)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHh------cc-----HHHHHH-HHHHHHHHHhccchhHH
Confidence 44557899999999999999998 7666555555444433321 00 111112 12222233334557777
Q ss_pred eeccccCccchhhhhhHHHHHHHHHHHHHHHHHhHHHHHHcCcchhhHHHHHHHHHHHHHHH
Q 014616 321 TLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELVGTGATFLILAGIAVLAVVFVI 382 (421)
Q Consensus 321 ~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 382 (421)
++..|..|+++|++..++.+..+.+++.+++...+.+.+..++...+++.+...++..+...
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~~~~~~~~~~~~~~~~i~~i~~~ 349 (352)
T cd06174 288 TLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALLAALLLL 349 (352)
T ss_pred HHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHhe
Confidence 88899999999999999999999999999999999998888888888888888877765543
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.8e-24 Score=207.36 Aligned_cols=343 Identities=20% Similarity=0.224 Sum_probs=218.5
Q ss_pred chhhhHHHHhhhhhhhcccchhHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHhhhhhhhhhHHHHHhhcCCCCCcc
Q 014616 2 ALVGAIVGAASGGWINDAYGRKKATLLADVVFTAGAIIMAAAPDPYVLILGRLLVGLGVGIASVTAPVYIAEASPSEVRG 81 (421)
Q Consensus 2 ~~ig~~~g~~~~g~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~s~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg 81 (421)
+.+|+++|.+++|.+.||++-.+.+..+.+.+++.+.++...+|++.+++.|++.|+.++..+|....+++.|+.+++||
T Consensus 90 F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~~w~~~~~~~~~~~s~~~~ialr~llGl~es~~wP~~~~~lg~wy~~~e~g 169 (495)
T KOG2533|consen 90 FYVGYIIGQFPSGLLGDRFPLSKGLSVSGILWGLFGFLTAAVHSFPGLIALRFLLGLFESGGWPGVVAILGNWYGKSERG 169 (495)
T ss_pred HHHHHHHHHhhHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcccchHHHHHHHhhcChhhhh
Confidence 57899999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred chhchHHHHHHHHHHHHHHHhhhccc-----CCccchHHHHhhHHHHHHHHHH-hhcCCcChHHHHhcCCHHHHHHHHHH
Q 014616 82 GLVSTNVLMITSGQFLSYLVNLAFTE-----VPGTWRWMLGVSAVPAIIQFVL-MLFMPESPRWLFMKSDKEKAILVLSK 155 (421)
Q Consensus 82 ~~~~~~~~~~~~g~~l~~~~~~~~~~-----~~~~Wr~~f~~~~~~~l~~~~~-~~~~~esp~~~~~~~~~~~~~~~~~~ 155 (421)
..++.......+|.++|.+++..+.. ...+|||.|++.+++.++..++ .+++|++|.-.....++|+... .
T Consensus 170 ~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW~~~FiI~G~i~~~~gi~~f~~lp~~P~~~~fl~~~ek~~~-~-- 246 (495)
T KOG2533|consen 170 LRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGWRWLFIIEGVITLVLGIVVFFFLPDNPSKAWFLTDEEKELV-V-- 246 (495)
T ss_pred hhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCceeehhHHHHHHHHHHheEEEEecCChhhccccchHHHHHH-H--
Confidence 99999998888999998888876422 2346999999999888776554 5678999972211122221100 0
Q ss_pred hcChhhhHHHHHHHHHHHHH-HHhhcccccHHHhhcchhHHHHHHHHHHHHHHHhhcCcceehhchHHHHHH-cCCCChH
Q 014616 156 IYDIARLEDEIDHLSAAAEE-ELRKKKTVRYLDVFKSKEIRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQM-AGFQSNQ 233 (421)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~ 233 (421)
++..+.... ..++.+...+++.+++|.+|...++. ++.....+...++.|.++++ .|++..+
T Consensus 247 -----------~~~~~~~~~~~~~~~~~~~~~~a~~dp~vw~~~l~~-----~~~~lv~~~~~~~lpl~l~~~~~~s~~~ 310 (495)
T KOG2533|consen 247 -----------ERLRESPSGGIENKFKWKGFKEALKDPGVWPFSLCY-----FFLKLVNYGFSYWLPLYLKSNGGYSELQ 310 (495)
T ss_pred -----------HHHHhccCCCcccccCHHHHHHHHhchhHHHHHHHH-----HHHhhccccHHHHHHHHHHcCCCcChHH
Confidence 000000000 00112345677888999887655443 23333455567788998887 4465555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhc----CChhHHHHhhHHHHHHH-HHHHHHHhhCCCCCCCcchhHHHHHHHHHHH
Q 014616 234 LALLLSLAVAGTNAVGTIVGIYLIDHF----GRKKLALSSLAGVIISL-VLLSWAFISGSSASSSGVYGWIAVIGLALYI 308 (421)
Q Consensus 234 ~~~~~~~~~~~~~~~g~~~~g~l~dr~----grr~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (421)
+..++.+..+.++++.+++|+++||+ .+|........+..+.. +.+.. . ...+..+ +.....
T Consensus 311 -a~~ls~~~~~~g~v~~i~ag~lsdr~~~~~~~~~~~~~~~~~~~~~g~~~l~~----~--~~~~~~~------~~~~~~ 377 (495)
T KOG2533|consen 311 -ANLLSTPYDVGGIVGLILAGYLSDRLKTIFARRLLFIVFLCLYAIIGAISLLA----A--AVLPGAY------GAFLIG 377 (495)
T ss_pred -hccccchHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHh----h--ccchHHh------HHHHhc
Confidence 45566666777899999999999994 44443333222211111 11111 1 1011111 111111
Q ss_pred HHhhcccccccceeccccCccchhhhhhHHHHH-HHHHHHHHHHHHhHHH-HHHcCcchhhHHHHHHHHH
Q 014616 309 AFFAPGMGPVPWTLNSEVYPEQYRGICGGMSAT-VNWISNLIVAQTFLTV-AELVGTGATFLILAGIAVL 376 (421)
Q Consensus 309 ~~~~~g~~~~~~~~~~e~~p~~~r~~~~g~~~~-~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~ 376 (421)
.+......+...++.++....+.|.......++ ....++.+.++.+... ....++...|....+.++.
T Consensus 378 ~~~~~~~~~~~~~w~s~~~~g~~k~~~~~~~~i~~~~s~~~~~~~~~~~~~ap~y~~~~~f~~~~~~~~~ 447 (495)
T KOG2533|consen 378 PYGLIATAIIALSWTSANLAGNTKALTTVSAIIDGTGSAGAISGQLFRSLDAPRYGWGAVFYMLVAACVG 447 (495)
T ss_pred chhhHHHHHHHHhhccccccchHHhHHHHhhhhcchhHHHHhhhhhcccccCcchhhhhHHHHHHHHHHH
Confidence 111122234445566666666666554444333 3445555655555332 2223556666444444433
|
|
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.9e-23 Score=198.85 Aligned_cols=233 Identities=22% Similarity=0.294 Sum_probs=166.2
Q ss_pred chhhhHHHHhhhhhhhcccchhHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHhhhhhhhhhHHHHHhhcCCCCCcc
Q 014616 2 ALVGAIVGAASGGWINDAYGRKKATLLADVVFTAGAIIMAAAPDPYVLILGRLLVGLGVGIASVTAPVYIAEASPSEVRG 81 (421)
Q Consensus 2 ~~ig~~~g~~~~g~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~s~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg 81 (421)
..++..+++++.|+++||+|||+++..+.++.+++...+.++++++.+++.|+++|++.+...+....++.|++|+++|+
T Consensus 35 ~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~ 114 (377)
T PRK11102 35 YILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALAQTIDQLIYMRFLHGLAAAAASVVINALMRDMFPKEEFS 114 (377)
T ss_pred HHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 35788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhchHHHHHHHHHHHHHHHhhhcccCCccchHHHHhhHHHHHHHHHH-hhcCCcChHHHHhcCCHHHHHHHHHHhcChh
Q 014616 82 GLVSTNVLMITSGQFLSYLVNLAFTEVPGTWRWMLGVSAVPAIIQFVL-MLFMPESPRWLFMKSDKEKAILVLSKIYDIA 160 (421)
Q Consensus 82 ~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~Wr~~f~~~~~~~l~~~~~-~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~ 160 (421)
+..+........|..+++.++..+.... +||+.|++.++..++..+. .+++||+++.. ++++ .+
T Consensus 115 ~~~~~~~~~~~~g~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~----------~~ 179 (377)
T PRK11102 115 RMMSFVTLVMTIAPLLAPIIGGWLLVWF-SWHAIFWVLALAAILAAALVFFFIPETLPKE----RRQP----------FH 179 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHc-ChHHHHHHHHHHHHHHHHHHHHhCCccCccc----ccCC----------CC
Confidence 9999988888888888888877665544 5999999887766665443 45667764210 0000 00
Q ss_pred hhHHHHHHHHHHHHHHHhhcccccHHHhhcchhHHHHHHHHHHHHHHHhhcCcceehhchHHH-HHHcCCCChHHHHHHH
Q 014616 161 RLEDEIDHLSAAAEEELRKKKTVRYLDVFKSKEIRLAFLAGAGLQAFQQFTGINTVMYYSPTI-VQMAGFQSNQLALLLS 239 (421)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~ 239 (421)
. ++ ...++++.++++..+...+.... .+.+......+.|.+ .+..|.+..+.+....
T Consensus 180 --------~----~~-----~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~ 237 (377)
T PRK11102 180 --------L----RT-----TIRNFASLFRHKRVLGYMLASGF-----SFAGMFSFLTAGPFVYIELNGVSPQNFGYYFA 237 (377)
T ss_pred --------h----HH-----HHHHHHHHHcChHHHHHHHHHHH-----HHHHHHHHHHcCHHHHHHHhCCCHHHHHHHHH
Confidence 0 00 00123345666665443222111 111111222233444 4557888777665554
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCChhHHHHhhHH
Q 014616 240 LAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAG 272 (421)
Q Consensus 240 ~~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~ 272 (421)
. ..+..+++.++.+++.||++||+....+...
T Consensus 238 ~-~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~ 269 (377)
T PRK11102 238 L-NIVFLFVMTIINSRFVRRVGALNMLRFGLWI 269 (377)
T ss_pred H-HHHHHHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence 4 4455788999999999999999887655543
|
|
| >KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.92 E-value=6.3e-26 Score=207.37 Aligned_cols=320 Identities=21% Similarity=0.258 Sum_probs=203.8
Q ss_pred chhhhHHHHhhhhhhhcccchhHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHhhhhhhhhhHHHHHhhcCCCCCcc
Q 014616 2 ALVGAIVGAASGGWINDAYGRKKATLLADVVFTAGAIIMAAAPDPYVLILGRLLVGLGVGIASVTAPVYIAEASPSEVRG 81 (421)
Q Consensus 2 ~~ig~~~g~~~~g~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~s~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg 81 (421)
+++.+++.++++|.++|||.||+++.++..+|.++++.++++..+++++++|.+.|+|++...+....+++|.+|.++|+
T Consensus 77 f~v~~~i~sPl~gyLadryNR~~v~~vG~~iW~~Av~~~~fs~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs 156 (493)
T KOG1330|consen 77 FIVVFMIASPLFGYLADRYNRKRVIAVGIFIWTLAVFASGFSNHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRS 156 (493)
T ss_pred HHHHHHHHHHHHHHHHhhcCcceEEeeHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhcccchhHhhhcCcchhhh
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhchHHHHHHHHHHHHHHHhhhcccCCccchHHHHhhHHHHHHHHHHh-hcCCcChHHHHhcCCHHHHHHHHHHhcChh
Q 014616 82 GLVSTNVLMITSGQFLSYLVNLAFTEVPGTWRWMLGVSAVPAIIQFVLM-LFMPESPRWLFMKSDKEKAILVLSKIYDIA 160 (421)
Q Consensus 82 ~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~Wr~~f~~~~~~~l~~~~~~-~~~~esp~~~~~~~~~~~~~~~~~~~~~~~ 160 (421)
+..+......+.|..+|.+.+..+....+.|||.|...++.+++..++. ++.+|.++- .+++...
T Consensus 157 ~~~~ify~~ipvGsglG~vvgs~va~~~~~Wr~af~~~avl~vi~~~L~~~f~~eP~rg-----a~~~~~~--------- 222 (493)
T KOG1330|consen 157 RVLGIFYFAIPVGSGLGYVVGSVVASLTFWWRWAFRGSAVLGVIVGLLVFLFVREPERG-----ARDEVDG--------- 222 (493)
T ss_pred HHHHHhhhhcccccceeEEeeeeeccCccceEEEEEeehHHHHHHHHHHHhhccCcccc-----ccccccc---------
Confidence 9999999999999999999888887777779999999999998876664 455665431 1111000
Q ss_pred hhHHHHHHHHHHHHHHHhhccc---ccHHHhhcchhHHHHHHHHHHHHHHHhhcCcceehhchHHHH----HHcCCCChH
Q 014616 161 RLEDEIDHLSAAAEEELRKKKT---VRYLDVFKSKEIRLAFLAGAGLQAFQQFTGINTVMYYSPTIV----QMAGFQSNQ 233 (421)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~g~~~~~ 233 (421)
+.+...+.. ++.+.+.|+|......+. +..... ......++.|.+. +..|++.+
T Consensus 223 -------------~~~~~~~~ts~~kDl~~l~~~~v~v~~sl~---~~a~~f--v~Gs~sww~p~~~~~~~~~~~~~~~- 283 (493)
T KOG1330|consen 223 -------------ENKMVKPFTSVWKDLKVLAKIKVFVLSSLG---IIAAQF--VIGSLSWWAPAFIYYSYELIGFDHN- 283 (493)
T ss_pred -------------CCcCCCCccchHHHHHHHHccCceeeehHH---HHHHHH--hccccchhhhhHHHHHHHHhCCccc-
Confidence 000000001 112223343332221111 111111 1222233333333 33454433
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCh-------hH-HHHhhHHHHHHHHHHHHHHhhCCCCCCCcchhHHHHHHHH
Q 014616 234 LALLLSLAVAGTNAVGTIVGIYLIDHFGRK-------KL-ALSSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLA 305 (421)
Q Consensus 234 ~~~~~~~~~~~~~~~g~~~~g~l~dr~grr-------~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (421)
.+.++....++.+.+|.+.+|.++||+.|+ +. ..........+...+.+..... .......+.++.++
T Consensus 284 ~~~ifg~vt~~~G~lGvl~Ggiisd~~~~~~~~~~~~~~~q~~~~~g~~~s~~~L~~~~~~~----~~s~~~~~il~~~g 359 (493)
T KOG1330|consen 284 ATLIFGGVTCAGGSLGVLFGGIISDKLSRIFPNSGTLRASQLSAALGAPLSIPFLFLFPAFT----SSSMIFGLILFLVG 359 (493)
T ss_pred cchhhhhHHHhhchhhheehHHHHHHHHHhcccccchhHHHHHHhhhhhHHHHHHHHHHhhh----hHHHHHHHHHHHHH
Confidence 455666667777899999999999995432 11 1111222222222221111111 11111122222222
Q ss_pred HHHHHhhcccccccceeccccCccchhhhhhHHHHHHHHHHHHH-HHHHhHHHHHHc
Q 014616 306 LYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLI-VAQTFLTVAELV 361 (421)
Q Consensus 306 ~~~~~~~~g~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~ 361 (421)
.. ....+.+++. -...|..|++.|+.+.++......+.+-. .|++.+.+.+..
T Consensus 360 ~~--~~~~~~a~n~-~i~l~vV~p~~Rt~a~a~~~~~~h~fgd~~~p~ivGilsd~l 413 (493)
T KOG1330|consen 360 ET--ISWFNWATNN-PIFLEVVPPSRRTTAYALDTVFEHIFGDAASPYIVGILSDKL 413 (493)
T ss_pred HH--HHhccccccc-ceeeEecCcccccHHHHHHHHHHHHhccCCCcceehhHHHHh
Confidence 22 2222333333 33478889999999999988876655544 455778777654
|
|
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.1e-23 Score=198.43 Aligned_cols=302 Identities=16% Similarity=0.134 Sum_probs=194.6
Q ss_pred hhHHHHhhhhhhhcccchhHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHhhhhhhhhhHHHHHhhcCCCCCccchh
Q 014616 5 GAIVGAASGGWINDAYGRKKATLLADVVFTAGAIIMAAAPDPYVLILGRLLVGLGVGIASVTAPVYIAEASPSEVRGGLV 84 (421)
Q Consensus 5 g~~~g~~~~g~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~s~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg~~~ 84 (421)
+..+.+++.|+++||+|||+++..+.++.+++.+.+.+.++++.+++.|+++|++.+...+...+++.|+.|+|+|++..
T Consensus 58 ~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~a~ 137 (400)
T PRK11646 58 IQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMAIAHEPWLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQRGRFF 137 (400)
T ss_pred HHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 34455789999999999999999999999999999999999999999999999999988899999999999999999999
Q ss_pred chHHHHHHHHHHHHHHHhhhcccCCccchHHHHhhHHHHHHHHHH-hhcCCcChHHHHhcCCHHHHHHHHHHhcChhhhH
Q 014616 85 STNVLMITSGQFLSYLVNLAFTEVPGTWRWMLGVSAVPAIIQFVL-MLFMPESPRWLFMKSDKEKAILVLSKIYDIARLE 163 (421)
Q Consensus 85 ~~~~~~~~~g~~l~~~~~~~~~~~~~~Wr~~f~~~~~~~l~~~~~-~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (421)
+........|..+++.++..+. .. +||+.|++.++..++..+. .++.||.+. ++ ++
T Consensus 138 ~~~~~~~~~g~~ig~~l~g~l~-~~-g~~~~f~~~~~~~~~~~i~~~~~~~~~~~-----~~-~~--------------- 194 (400)
T PRK11646 138 SLLMMQDSAGAVIGALLGSWLL-QY-DFRLVCATGAVLFVLAAAFNAWLLPAYKL-----ST-VR--------------- 194 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-Hh-hHHHHHHHHHHHHHHHHHHHHHhCCcccc-----cc-cc---------------
Confidence 9999999999999988887765 33 5999999887766554433 344554210 00 00
Q ss_pred HHHHHHHHHHHHHHhhcccccHHHhhcchhHHHHHHHHHHHHHHHhhcCcceehhchHHHHHHcCCCChHHHHHHHHHHH
Q 014616 164 DEIDHLSAAAEEELRKKKTVRYLDVFKSKEIRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQMAGFQSNQLALLLSLAVA 243 (421)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 243 (421)
+ + . ...+++.++++.++......... ... ......+.|.+.++.+.++.+.+........
T Consensus 195 ---~-------~-~----~~~~~~~~~~~~~~~~~~~~~~~-~~~----~~~~~~~~p~~~~~~~~~~~~~g~l~~~~~~ 254 (400)
T PRK11646 195 ---T-------P-V----REGMTRVLRDKRFVTYVLTLTGY-YML----AVQVMLMLPIMVNDIAGSPSAVKWMYAIEAC 254 (400)
T ss_pred ---h-------h-h----HHHHHHHHcCchHHHHHHHHHHH-HHH----HHHHHHhhhhhHHhhcCCchHHHHHHHHHHH
Confidence 0 0 0 01233456666654332221111 110 1111235677777766666666655544443
Q ss_pred HHHHHHHHHHHHHHhhcCChhHHHHhhHHHHHHHHHHHHHHhhCCCCCCCcchhHHHHHHHHHHHHHhhcccccccceec
Q 014616 244 GTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLALYIAFFAPGMGPVPWTLN 323 (421)
Q Consensus 244 ~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 323 (421)
+.......++.+..||.+.++....+.....++..++... +. . +........+.. ......|...++.
T Consensus 255 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~~---~~-------~-~~~~~~~~l~~~-g~~~~~p~~~~~~ 322 (400)
T PRK11646 255 LSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSMFPIGMV---SN-------L-QQLFTLICLFYI-GSIIAEPARETLS 322 (400)
T ss_pred HHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHh---hh-------H-HHHHHHHHHHHH-HHHHHHccHHHHH
Confidence 3222333344444445555554444443333333322211 00 1 111111111111 1112234555777
Q ss_pred cccCccchhhhhhHHHHHHHHHHHHHHHHHhHHHHHHc
Q 014616 324 SEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELV 361 (421)
Q Consensus 324 ~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 361 (421)
.|..|++.|++..|+.+....++..+++.+.+.+.+..
T Consensus 323 ~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~l~~~~ 360 (400)
T PRK11646 323 ASLADARARGSYMGFSRLGLALGGAIGYIGGGWLFDLG 360 (400)
T ss_pred HhcCCcccchhhhhHHHHHHHHHHHhcccchHHHHHHH
Confidence 89999999999999999999999999999999988875
|
|
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.92 E-value=7.2e-23 Score=221.62 Aligned_cols=342 Identities=14% Similarity=0.095 Sum_probs=210.4
Q ss_pred chhhhHHHHhhhhhhhcccchhHHHHHHHHHHHHHHHH---HHhcCChhHHHHHHHHHHhhhhhhhhhHHHHHhhcCCCC
Q 014616 2 ALVGAIVGAASGGWINDAYGRKKATLLADVVFTAGAII---MAAAPDPYVLILGRLLVGLGVGIASVTAPVYIAEASPSE 78 (421)
Q Consensus 2 ~~ig~~~g~~~~g~l~dr~Grr~~~~~~~~l~~i~~~~---~~~~~s~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~ 78 (421)
+.++++++++++|+++||+|||+++.++.++..+.+++ +..+++++.++++|+++|++.+...++..++++|++|++
T Consensus 56 ~~l~~~l~~~~~G~l~Dr~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~ 135 (1146)
T PRK08633 56 FLLPFLLLSSPAGFLADKFSKNRVIRIVKLFEVGLTLLIVLAYYLGWFWLAFAVTFLLGAQSAIYSPAKYGIIPELVGKE 135 (1146)
T ss_pred HHHHHHHHhhhHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHhhchHHHhhhHHhcCcc
Confidence 45778899999999999999999999988766555554 445678999999999999999999999999999999999
Q ss_pred CccchhchHHHHHHHHHHHHHHHhhhcccC--------CccchHHHHhhHHH-HHHHHHHhhcCCcChHHHHhcCCHHHH
Q 014616 79 VRGGLVSTNVLMITSGQFLSYLVNLAFTEV--------PGTWRWMLGVSAVP-AIIQFVLMLFMPESPRWLFMKSDKEKA 149 (421)
Q Consensus 79 ~rg~~~~~~~~~~~~g~~l~~~~~~~~~~~--------~~~Wr~~f~~~~~~-~l~~~~~~~~~~esp~~~~~~~~~~~~ 149 (421)
+|+++++.......+|.++++.++..+... .++|++.+.+..+. .++.++..+.+||+|.....+.+++..
T Consensus 136 ~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (1146)
T PRK08633 136 NLSRANGLLEAFTIVAILAGTALFSFLFESVNGNTPSEILGRIAPAGLVLLAVAVLGLIFAYRLPKVPAAAPEVFDKKKY 215 (1146)
T ss_pred cchhhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccccccchHHHHHHHHHHHHHHHHHHhcCcCCCCCCccccccccc
Confidence 999999999999999999998888776543 23355555544433 333444455678876532111000000
Q ss_pred HHHHHHhcChhhhHHHHHHHHHHHHHHHhhcccccHHHhhcchhHHHHHHHHHHHHHHHhhcCcceehhchHHHH-HHcC
Q 014616 150 ILVLSKIYDIARLEDEIDHLSAAAEEELRKKKTVRYLDVFKSKEIRLAFLAGAGLQAFQQFTGINTVMYYSPTIV-QMAG 228 (421)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g 228 (421)
. ... .....+..+++++.++...+........ ......+.|.+. +..|
T Consensus 216 ----------~------------~~~----~~~~~~~~l~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~g 264 (1146)
T PRK08633 216 ----------L------------FPK----LLWRNLKLLRSDRVLWLAIIGLSYFWFI-----SQLAQANFPAYAKEVLG 264 (1146)
T ss_pred ----------c------------cHH----HHHHHHHHHhcCcHHHHHHHHHHHHHHH-----HHHHHHhhHHHHHHHhC
Confidence 0 000 0011234456677665543332221111 111122334444 5678
Q ss_pred CCCh-HHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHhhHHHHHHHHHHHHHHhhCCCCCCCcchhHHHHHHHHHH
Q 014616 229 FQSN-QLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLALY 307 (421)
Q Consensus 229 ~~~~-~~~~~~~~~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (421)
.+.. ..+.+.... .++.+++.++.+++.||.++++.+..+.++..++.+.+.+. . ..+..+....++
T Consensus 265 ~s~~~~~g~~~~~~-~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~--~---------~~~~~~~~~~~~ 332 (1146)
T PRK08633 265 LDNTFQVQYLLAAS-AIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLPTA--P---------SLASVLVLFFLF 332 (1146)
T ss_pred CCcHHHHHHHHHHH-HHHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHHHHh--h---------hHHHHHHHHHHH
Confidence 8777 555554444 44578899999999999998877665554444443333221 0 011111221111
Q ss_pred HHHhhcccccccceeccccCccchhhhhhHHHHHHHHHHHHHHHHHhHHHHHHcC--cchhhHHHHHHHHHHHHHHHhhc
Q 014616 308 IAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELVG--TGATFLILAGIAVLAVVFVILFV 385 (421)
Q Consensus 308 ~~~~~~g~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g--~~~~~~~~~~~~~~~~~~~~~~~ 385 (421)
.+......+...++..+..|++.||++.++.++...++.++++.+...+.. .+ +...+++.+.+.++..+......
T Consensus 333 -g~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 410 (1146)
T PRK08633 333 -GFSAGLFIVPLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLFSG-LGLSPAGLFYLIALVTLIGTLYTLLLL 410 (1146)
T ss_pred -HHHHHHhhHHHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHH-hccCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 122222234456777899999999999999999998888666554443333 33 22344444444444433333344
Q ss_pred cCC
Q 014616 386 PET 388 (421)
Q Consensus 386 ~et 388 (421)
|++
T Consensus 411 ~~~ 413 (1146)
T PRK08633 411 PDS 413 (1146)
T ss_pred HHH
Confidence 443
|
|
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.91 E-value=5e-23 Score=187.04 Aligned_cols=329 Identities=20% Similarity=0.265 Sum_probs=224.1
Q ss_pred HHHhhhhhhhcccchhHHHHHHHHHHHHHHHHHHhcCChh---HHHHHHHHHHhhhhhhhhhHHHHHhhcCCCCCccchh
Q 014616 8 VGAASGGWINDAYGRKKATLLADVVFTAGAIIMAAAPDPY---VLILGRLLVGLGVGIASVTAPVYIAEASPSEVRGGLV 84 (421)
Q Consensus 8 ~g~~~~g~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~s~~---~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg~~~ 84 (421)
+--++.|.+.||+|.|++..++.++..+.++..+++.+++ ++++.+++.|++ |+.+.+...++++|+|||++|.+.
T Consensus 64 llRl~~g~l~drfGgR~~~~~s~~l~~IP~~~~~~a~~~~~~~~ll~~gll~G~~-GasFav~m~~~s~~fP~~~qG~Al 142 (417)
T COG2223 64 LLRLPYGFLTDRFGGRKWTILSMLLLLIPCLGLAFAVTYPSTWQLLVIGLLLGLA-GASFAVGMPNASFFFPKEKQGLAL 142 (417)
T ss_pred HHHHHHHhhhcccCchHHHHHHHHHHHHHHHHHHHHccCCchHHHHHHHHHHhcc-cceehcccccccccCChhhhhHHH
Confidence 3456899999999999999999999999999999987766 999999999995 556777888999999999999999
Q ss_pred chHHHHHHHHHHHHHHHhhhcccCCc--cchHHHHhhHHHHHHHHH-HhhcCCcChHHHHhcCCHHHHHHHHHHhcChhh
Q 014616 85 STNVLMITSGQFLSYLVNLAFTEVPG--TWRWMLGVSAVPAIIQFV-LMLFMPESPRWLFMKSDKEKAILVLSKIYDIAR 161 (421)
Q Consensus 85 ~~~~~~~~~g~~l~~~~~~~~~~~~~--~Wr~~f~~~~~~~l~~~~-~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~ 161 (421)
+.+. ..+.|..+...++..+....+ .||....+..++.++..+ .++.+.|.|......+
T Consensus 143 GI~g-~GN~G~av~q~~~P~v~~~~g~~~w~~~~~i~~~~l~v~~v~~~~~~~d~p~~r~~~~----------------- 204 (417)
T COG2223 143 GIAG-AGNLGVAVAQLVAPLVAVAFGFLAWRNVAGIYVVALAIAAVLAWLGMNDVPEHRASVK----------------- 204 (417)
T ss_pred HHhc-cccccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhcccc-----------------
Confidence 9888 777777766655554444333 299988887776666444 4556666664211000
Q ss_pred hHHHHHHHHHHHHHHHhhcccccHHHhhcchhHHHHHHHHHHHHHHHhhcCcceehhchHHHHH-HcCCCChHHHHHHHH
Q 014616 162 LEDEIDHLSAAAEEELRKKKTVRYLDVFKSKEIRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQ-MAGFQSNQLALLLSL 240 (421)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~ 240 (421)
+..+.+.+..+++++.|...+.. +..+.++..+..+.|.+++ +++.+....+.+...
T Consensus 205 -----------------~~~~~~~~~v~~~~~~W~lsllY-----~~tFG~Fvgfs~~l~~~~~~~fg~~~~~Ag~~a~~ 262 (417)
T COG2223 205 -----------------PQLPAQLKAVFSNKDTWLLSLLY-----FATFGGFVGFSAYLPMYLVTQFGLSPVTAGLIAFL 262 (417)
T ss_pred -----------------ccchhHHHHHhcCcchHHHHHHH-----HHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHH
Confidence 00002345667788877654432 2223333344456677765 678887776655544
Q ss_pred HHHHHHHHHHHHHHHHHhhcCChhHHHHhhHHHHHHHHHHHHHHhhCCCCCCCcchhHHHHHHHHHHHHHhhcccccccc
Q 014616 241 AVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLALYIAFFAPGMGPVPW 320 (421)
Q Consensus 241 ~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 320 (421)
.. ..+.+..+++|+++||+|.+|.....+..+.++...+...... ..... ..+.....+.....+...|.+. .+
T Consensus 263 f~-~~g~l~Rp~GG~LsDR~Gg~rv~~~~f~~~~~~~~~l~~~~~~--~~~~~--~~~~~~~~~l~l~~~~G~GnGs-vf 336 (417)
T COG2223 263 FP-LIGALARPLGGWLSDRIGGRRVTLAVFVGMALAAALLSLFLTG--FGHGG--SFVVFVAVFLALFVFAGLGNGS-VF 336 (417)
T ss_pred HH-HHHHHHHhccchhhhhccchhHHHHHHHHHHHHHHHHHccccc--cccCc--chHHHHHHHHHHHHHhccCcch-he
Confidence 33 3467889999999999999988877666666665555432111 11011 1112222222222233334333 34
Q ss_pred eeccccCccchhhhhhHHHHHHHHHHHHHHHHHhHHHHHHcC-cchhhHHHHHHHHHHHHHHHhh
Q 014616 321 TLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELVG-TGATFLILAGIAVLAVVFVILF 384 (421)
Q Consensus 321 ~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~ 384 (421)
-++...+|. +-|...|+..+++.+|++..|..++...+..| +...|+++..+.+++.+..+..
T Consensus 337 k~Ip~if~~-~~G~v~G~vga~G~lGGf~lp~~~g~~~~~tg~~~~~f~~~~~~~~~a~v~~~~~ 400 (417)
T COG2223 337 KMIPVIFPK-ETGAVTGIVGAIGGLGGFFLPLAFGVSLDLTGSYTGAFMLLLAFYLVALVLTWAL 400 (417)
T ss_pred eechHHHHh-hhhHHHHHHHHhccccccchhHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777766 45677899999999999999999999999888 5678888888888887766554
|
|
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.7e-22 Score=190.15 Aligned_cols=325 Identities=14% Similarity=0.133 Sum_probs=195.1
Q ss_pred hhhhHHHHhhhhhhhcccchhHHH-HHHHHHHHHHHHHHHhcCChhHHHHHHHHHHhhhhhhhhhHHHHHhhcCCCCCcc
Q 014616 3 LVGAIVGAASGGWINDAYGRKKAT-LLADVVFTAGAIIMAAAPDPYVLILGRLLVGLGVGIASVTAPVYIAEASPSEVRG 81 (421)
Q Consensus 3 ~ig~~~g~~~~g~l~dr~Grr~~~-~~~~~l~~i~~~~~~~~~s~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg 81 (421)
.++++++.+++++ +||+||||.+ ..+.++.++++.+.+++++++.+++.+.+.|...+...+....+..|+.|+++|.
T Consensus 62 ~~~~~~~~~~~~~-~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (393)
T PRK15011 62 VIGILVSQFLAGR-SDKRGDRKSLIVFCCLLGVLACTLFAWNRNYFVLLFVGVFLSSFGSTANPQMFALAREHADKTGRE 140 (393)
T ss_pred HHHHHHHHHHHHH-HhcccchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhccch
Confidence 4567778877777 9999999875 5566666788888889999998876665555555567888888889988777663
Q ss_pred --chhchHHHHHHHHHHHHHHHhhhcccCCccchHHHHhhHHHHHHHHHH-hhcCCcChHHHHhcCCHHHHHHHHHHhcC
Q 014616 82 --GLVSTNVLMITSGQFLSYLVNLAFTEVPGTWRWMLGVSAVPAIIQFVL-MLFMPESPRWLFMKSDKEKAILVLSKIYD 158 (421)
Q Consensus 82 --~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~Wr~~f~~~~~~~l~~~~~-~~~~~esp~~~~~~~~~~~~~~~~~~~~~ 158 (421)
.+.+........|.+++++++..+.+.. +||+.|++.++..++..+. +.++||+|+.. ++ +.
T Consensus 141 ~~~~~~~~~~~~~lg~~~g~~i~~~l~~~~-gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~---------- 205 (393)
T PRK15011 141 AVMFSSFLRAQVSLAWVIGPPLAYALAMGF-SFTVMYLSAAVAFIVCGVMVWLFLPSMRKEL---PL-AT---------- 205 (393)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHhc-ChHHHHHHHHHHHHHHHHHHHhhcCccCCCC---cc-cc----------
Confidence 3446667778889999988887776555 5999999888766655444 45578765310 00 00
Q ss_pred hhhhHHHHHHHHHHHHHHHhhcccccHHHhhcc-hhHHHHHHHHHHHHHHHhhcCcceehhchHHHH-HHcCCCChHHHH
Q 014616 159 IARLEDEIDHLSAAAEEELRKKKTVRYLDVFKS-KEIRLAFLAGAGLQAFQQFTGINTVMYYSPTIV-QMAGFQSNQLAL 236 (421)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~ 236 (421)
++ .+. ..++ +..+......... .. .......+.|.+. +..|.+..+.+.
T Consensus 206 ---------------~~-~~~--------~~~~~~~~~~~~~~~~~~-~~----~~~~~~~~~p~~l~~~~~~~~~~~g~ 256 (393)
T PRK15011 206 ---------------GT-LEA--------PRRNRRDTLLLFVICTLM-WG----TNSLYIINMPLFIINELHLPEKLAGV 256 (393)
T ss_pred ---------------cc-ccc--------cccccccHHHHHHHHHHH-HH----HHHHHHHHHHHHHHHHcCCCHHHHHH
Confidence 00 000 0011 1111111111111 10 1111123455555 456887776666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHhhHHHHHHHHHHHHHHhhCCCCCCCcchhHHHHHHHHHHHHHhhcccc
Q 014616 237 LLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLALYIAFFAPGMG 316 (421)
Q Consensus 237 ~~~~~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 316 (421)
..... .+..+++.++.|+++||++||+....+.....+....+ .. . .+ . +..+....+....... ..
T Consensus 257 ~~~~~-~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~--~~-~---~~----~-~~~l~~~~l~~~~~g~-~~ 323 (393)
T PRK15011 257 MMGTA-AGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGM--LM-A---HS----P-AILLGLQLLNAIYIGI-LG 323 (393)
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHH--HH-H---hh----H-HHHHHHHHHHHHHHHH-HH
Confidence 55443 34467888999999999999987654433322222111 11 1 00 1 1111111111000000 01
Q ss_pred cccceeccccCccchhhhhhHHHHHHHHHHHHHHHHHhHHHHHHcCcchhhHHHHHHHHHHHHHHHhhccC
Q 014616 317 PVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELVGTGATFLILAGIAVLAVVFVILFVPE 387 (421)
Q Consensus 317 ~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~e 387 (421)
+....+..|.+|++ |+++.++.+....+++.+++...+.+.+..++...+.+.+...++..+..+ ..||
T Consensus 324 ~~~~~~~~~~~p~~-~g~~~~~~~~~~~lg~~~g~~l~G~i~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~ 392 (393)
T PRK15011 324 GIGMLYFQDLMPGQ-AGSATTLYTNTSRVGWIIAGSLAGIVAEIWNYHAVFWFALVMIIATLFCLL-RIKD 392 (393)
T ss_pred HHHHHHHHHhCCCC-cchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH-hhcC
Confidence 12234557888865 889999988888999999999999998888887777776666666554443 3354
|
|
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.2e-22 Score=190.43 Aligned_cols=329 Identities=16% Similarity=0.115 Sum_probs=205.8
Q ss_pred HHHHhhhhhhhccc-----chhH-HHHHHHHHHHHHHHHHHhcC---ChhHHHHHHHHHHhhhhhhhhhHHHHHhhcCCC
Q 014616 7 IVGAASGGWINDAY-----GRKK-ATLLADVVFTAGAIIMAAAP---DPYVLILGRLLVGLGVGIASVTAPVYIAEASPS 77 (421)
Q Consensus 7 ~~g~~~~g~l~dr~-----Grr~-~~~~~~~l~~i~~~~~~~~~---s~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~ 77 (421)
.+..+++|+++||+ |||| .+.++.++.+++....++.+ +++.+.+..++.++..+...+...+++.|+.|+
T Consensus 46 ~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~ 125 (402)
T PRK11902 46 YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAASIAAMAFCPPHAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHP 125 (402)
T ss_pred HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCh
Confidence 46678999999999 8876 78888888888888878773 467788888888998999999999999999999
Q ss_pred CCccchhchHHHHHHHHHHHHHHHhhhcccCCccchHHHHhhHHHHHHHHHHhhcCCcChHHHHhcCCHHHHHHHHHHhc
Q 014616 78 EVRGGLVSTNVLMITSGQFLSYLVNLAFTEVPGTWRWMLGVSAVPAIIQFVLMLFMPESPRWLFMKSDKEKAILVLSKIY 157 (421)
Q Consensus 78 ~~rg~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~Wr~~f~~~~~~~l~~~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~ 157 (421)
|+|+++.+....+...|.++++.+...+.....+||..|++.++..++..+...+.||+++.. +++++.
T Consensus 126 ~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~~~gw~~~f~i~a~~~l~~~l~~~~~~e~~~~~---~~~~~~-------- 194 (402)
T PRK11902 126 EERGAGAAVKVLGYRLAMLVSGGLALWLADRVLGWGNTYLLMAGLMLAGALTTLWAPEPEVPA---RPPRSL-------- 194 (402)
T ss_pred hhhhHHHHHHHHHHHHHHHHHhHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHhcCCCcccc---cccchh--------
Confidence 999999999888888888888777766555333699999998876666555555677765321 000000
Q ss_pred ChhhhHHHHHHHHHHHHHHHhhcccccHHHhhcchhHHHHHHHHHHHHHHHhhcCcceehhchHHHHHHcCCCChHHHHH
Q 014616 158 DIARLEDEIDHLSAAAEEELRKKKTVRYLDVFKSKEIRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQMAGFQSNQLALL 237 (421)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 237 (421)
.++ ....+++++|+|.++................ ..+..|.+.++.|.+..+.+..
T Consensus 195 ----------------~~~----~~~~~~~l~~~~~~~~~l~~~~l~~~~~~~~----~~~~~~~l~~~~G~~~~~~g~~ 250 (402)
T PRK11902 195 ----------------GEA----VVGPLRDFFSRRGAWALLLLIVLYKLGDAFA----GSLSTTFLIRGAGFSAGEVGIV 250 (402)
T ss_pred ----------------HHH----HHHHHHHHHhCcCHHHHHHHHHHHHhHHHHH----HHHHHHHHHHhcCCCHHHHHHH
Confidence 000 0112445678887665443322211111110 1123344556678887776665
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCChhHHHHhhHHHHHHHHHHHHHHhhCCCCCCCcchhHHHHHHHH---HHHHHhhcc
Q 014616 238 LSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLA---LYIAFFAPG 314 (421)
Q Consensus 238 ~~~~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~g 314 (421)
.........+++.++++++.||+++|+..........+....+....... .+ .+....... +...+....
T Consensus 251 ~~~~~~~~~i~g~~~~g~l~~r~g~~~~l~~~~~~~~l~~l~~~~~~~~~--~~-----~~~~~~~~~~~~~~~g~~~~~ 323 (402)
T PRK11902 251 NKTLGLAATIVGALAGGTLMVRLGLYRSLMLFGVLQAVSNLGYWVLAVTP--KH-----LWTMALAIGIENLCGGMGTAA 323 (402)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcC--Cc-----HHHHHHHHHHHHHHHHHHHHH
Confidence 54444444688999999999999998876544443333322221111111 10 011111111 111111112
Q ss_pred cccccceeccccCccchhhhhhHHHHHHHHHHHHHHHHHhHHHHHHcCcchhhHHHHHHHHHHHHHH
Q 014616 315 MGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELVGTGATFLILAGIAVLAVVFV 381 (421)
Q Consensus 315 ~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 381 (421)
..+....+..+.+|.+.++ ..++...++...++...+.+.|..|+...|...+.+++++..+.
T Consensus 324 ~~~~~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~G~l~~~~G~~~~f~~~~~~~~~~~~~~ 386 (402)
T PRK11902 324 FVALLMALCNRSFSATQYA----LLSALASVGRVYVGPTSGYLVEAYGWPGFYLMTVVIALPGLALL 386 (402)
T ss_pred HHHHHHHhcCCCCcHHHHH----HHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHH
Confidence 2344445667777776554 34444556666556677888899998877877777776665444
|
|
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.4e-22 Score=191.68 Aligned_cols=317 Identities=14% Similarity=0.172 Sum_probs=196.8
Q ss_pred chhhhHHHHhhhhhhhcccchhHHHHHHHHHHHHHHHHH---HhcCChhHHHHHHHHHHhhhhhhhhhHHHHHhhcCCCC
Q 014616 2 ALVGAIVGAASGGWINDAYGRKKATLLADVVFTAGAIIM---AAAPDPYVLILGRLLVGLGVGIASVTAPVYIAEASPSE 78 (421)
Q Consensus 2 ~~ig~~~g~~~~g~l~dr~Grr~~~~~~~~l~~i~~~~~---~~~~s~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~ 78 (421)
..+|+.+++++.|++.||+|||+++..+.++++++++++ ++++|++.++++|+++|+|.|...+....++.|+.|++
T Consensus 70 ~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~~~~~~~~l~~~~~~a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~ 149 (438)
T PRK10133 70 FYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPES 149 (438)
T ss_pred HHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChh
Confidence 457899999999999999999999999999999999875 57899999999999999999999999999999988777
Q ss_pred CccchhchHHHHHHHHHHHHHHHhhhcc--c---------------CC--------ccchHHHHhhH-HHHHHHHHH-hh
Q 014616 79 VRGGLVSTNVLMITSGQFLSYLVNLAFT--E---------------VP--------GTWRWMLGVSA-VPAIIQFVL-ML 131 (421)
Q Consensus 79 ~rg~~~~~~~~~~~~g~~l~~~~~~~~~--~---------------~~--------~~Wr~~f~~~~-~~~l~~~~~-~~ 131 (421)
+|...++..+.....|..+++.++..+. . .. .+||++|+... +..++.++. ..
T Consensus 150 ~~~~~~s~~~~~~~~G~~~g~~~g~~l~~~~~~~~~~~~~~~l~~~~~~~w~~~~~~~w~~~f~~~~~v~~~~~~~~~~~ 229 (438)
T PRK10133 150 SGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMTPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLT 229 (438)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchhhhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 7776777888888888888877764321 0 00 24666775433 333232222 23
Q ss_pred cCCcChHHHHhcCCHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHhhcccccHHHhhcchhHHHHHHHHHHHHHHHhhc
Q 014616 132 FMPESPRWLFMKSDKEKAILVLSKIYDIARLEDEIDHLSAAAEEELRKKKTVRYLDVFKSKEIRLAFLAGAGLQAFQQFT 211 (421)
Q Consensus 132 ~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (421)
..||.|.. ++.+ + .+.+....+++++++|.++...+...... .
T Consensus 230 ~~p~~~~~----~~~~---------------------------~-~~~~~~~~~~~ll~~~~~~~~~l~~~~~~-----~ 272 (438)
T PRK10133 230 KFPALQSD----NHSD---------------------------A-KQGSFSASLSRLARIRHWRWAVLAQFCYV-----G 272 (438)
T ss_pred cCCCCCcc----cccc---------------------------c-cccchhhhHHHHHhCchHHHHHHHHHHHH-----H
Confidence 34543210 0000 0 00000112346677877655433222111 1
Q ss_pred CcceehhchHHH-HH-HcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHhhHHHHHHHHHHHHHHhhCCC
Q 014616 212 GINTVMYYSPTI-VQ-MAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSS 289 (421)
Q Consensus 212 ~~~~~~~~~~~~-~~-~~g~~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~l~~~~~~~~~ 289 (421)
.......+.+.+ .+ ..|.+..+.+..... .....++|+.+++++.||+++|+.+..+..+..+...+. .+ ..
T Consensus 273 ~~~~~~~~~~~~l~~~~~g~s~~~ag~~~~~-~~~~~~vG~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~--~~-~~-- 346 (438)
T PRK10133 273 AQTACWSYLIRYAVEEIPGMTAGFAANYLTG-TMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLIS--AF-AG-- 346 (438)
T ss_pred HHHHHHHHHHHHHhhhcCCCCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHH--HH-cC--
Confidence 111111233434 44 468887776655544 445578999999999999999988765544433222221 11 11
Q ss_pred CCCCcchhHHHHHHHHHHHHHhhcccccccceeccccCccchhhhhhHHHHHHHHHHHHHHHHHhHHHHHHcC-cchhhH
Q 014616 290 ASSSGVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELVG-TGATFL 368 (421)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~ 368 (421)
. . .. ...+ ....+......|..++...|.+|++ .+.+.++.. .+.+++.+++.+.+.+.+..| ....|+
T Consensus 347 -~-~--~~---~~~~-~l~glg~~~i~P~~~s~a~~~~~~~-~~~as~l~~-~~~~g~~~~~~i~G~l~~~~g~~~~~~~ 416 (438)
T PRK10133 347 -G-H--VG---LIAL-TLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAEL 416 (438)
T ss_pred -C-h--HH---HHHH-HHHHHHHHHHHHHHHHHHHcccchh-hccchhHHh-HHhccchHHHHHHHHHHHhccchHHHHH
Confidence 0 0 11 1111 1122233344577778888887764 456666665 355677788888888888776 344454
Q ss_pred HHH
Q 014616 369 ILA 371 (421)
Q Consensus 369 ~~~ 371 (421)
+..
T Consensus 417 v~~ 419 (438)
T PRK10133 417 IPA 419 (438)
T ss_pred HHH
Confidence 433
|
|
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=99.91 E-value=6.5e-23 Score=194.26 Aligned_cols=307 Identities=15% Similarity=0.178 Sum_probs=182.9
Q ss_pred chhhhHHHHhhhhhhhcccchhHHHHHHHHHHHHHHHHHHhcC-ChhHHHHHHHHHHhhhhhhhhhHHHHHhhcCCCCCc
Q 014616 2 ALVGAIVGAASGGWINDAYGRKKATLLADVVFTAGAIIMAAAP-DPYVLILGRLLVGLGVGIASVTAPVYIAEASPSEVR 80 (421)
Q Consensus 2 ~~ig~~~g~~~~g~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~-s~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~r 80 (421)
..++.++++++.|+++||+|||+++.++.++..++.+++++++ +++.+++.|+++|++.+. .+....++.|++|+++|
T Consensus 46 ~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~r 124 (366)
T TIGR00886 46 PVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWAGLAVQSYSVLLLLRLFIGIAGGS-FASCMPWISFFFPKKIQ 124 (366)
T ss_pred HHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhchh-hHhHHHHHHHhcCHhhh
Confidence 3578899999999999999999999999999999999999999 999999999999998654 55678899999999999
Q ss_pred cchhchHHHHHHHHHHHHHHHhhhccc---------CCccchHHHHh-hHHHHHH-HHHHhhcCCcChHHHHhcCCHHHH
Q 014616 81 GGLVSTNVLMITSGQFLSYLVNLAFTE---------VPGTWRWMLGV-SAVPAII-QFVLMLFMPESPRWLFMKSDKEKA 149 (421)
Q Consensus 81 g~~~~~~~~~~~~g~~l~~~~~~~~~~---------~~~~Wr~~f~~-~~~~~l~-~~~~~~~~~esp~~~~~~~~~~~~ 149 (421)
+...+........|..+++.++..+.. ...+||+.|++ .++...+ ..+...+.+|+|+.. ++++.
T Consensus 125 ~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~ 200 (366)
T TIGR00886 125 GTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAHLAWGWAFVIVPAGILLLPALLIFFVGADTPPGK----PATGK 200 (366)
T ss_pred hHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcccccccccccchhHHHHHHHHHHHHHHHHHhcccCCccc----ccchh
Confidence 999888776666666555544433221 12269999944 3443333 333345567765311 10000
Q ss_pred HHHHHHhcChhhhHHHHHHHHHHHHHHHhhcccccHHHhhcchhHHHHHHHHHHHHHHHhhcCcceehhchHHHHH-HcC
Q 014616 150 ILVLSKIYDIARLEDEIDHLSAAAEEELRKKKTVRYLDVFKSKEIRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQ-MAG 228 (421)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g 228 (421)
... + +.. . ..+ ++......+.+++++.+...+..... .........+.|.+.+ ..|
T Consensus 201 ~~~-------~--~~~-~----~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~g 257 (366)
T TIGR00886 201 LSF-------K--GAR-W----SVG----TGALGDQLKVFRDRHTWILALLYSVT-----FGSFLGVSSIFAMFFKDQFG 257 (366)
T ss_pred ccc-------c--ccc-c----ccc----chhHHHHHHHHhccchhhHHHHHHHH-----HHHHHHHHHHHHHHHHHHcC
Confidence 000 0 000 0 000 00001234566677655443322211 1111122334555654 568
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHhhHHHHHHHHHHHHHHhhCCCCCCCcchhHHHHHHHHHHH
Q 014616 229 FQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLALYI 308 (421)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (421)
.+..+.+.+... .....+++.+++|+++||++||+...........+..++.... ... ... +..........
T Consensus 258 ~~~~~~~~~~~~-~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~--~~~----~~~-~~~~~~~~~~~ 329 (366)
T TIGR00886 258 LSKVTAGAYASL-GGLLGSLARPLGGAISDRLGGARKLLMSFLGVAMGAFLVVLGL--VSP----LSL-AVFIVLFVALF 329 (366)
T ss_pred CcHHHHHHHHHH-HHHHHHHHhhccchHHHhhccchhHHHHHHHHHHHHHHHHhcC--CCc----chH-HHHHHHHHHHH
Confidence 877666554444 3445788999999999999998776555444333333322211 100 011 11111111222
Q ss_pred HHhhcccccccceeccccCccchhhhhhHHHHHHHHHH
Q 014616 309 AFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWIS 346 (421)
Q Consensus 309 ~~~~~g~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~ 346 (421)
.+... ..+..++...|..| ++||.+.|+.++.+++|
T Consensus 330 ~~~g~-~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g 365 (366)
T TIGR00886 330 FFSGA-GNGSTFALVPHIFR-RATGAVSGLVGAIGNLG 365 (366)
T ss_pred HHhcc-ccchhhhcchhhch-hhcccHHHHHHHhccCC
Confidence 22222 22445667788877 57899999888776654
|
|
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.1e-21 Score=187.70 Aligned_cols=305 Identities=18% Similarity=0.177 Sum_probs=190.9
Q ss_pred chhhhHHHHhhhhhhhcccchhHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHhhhhhhhhhHHHHHhhcCCCCCcc
Q 014616 2 ALVGAIVGAASGGWINDAYGRKKATLLADVVFTAGAIIMAAAPDPYVLILGRLLVGLGVGIASVTAPVYIAEASPSEVRG 81 (421)
Q Consensus 2 ~~ig~~~g~~~~g~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~s~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg 81 (421)
..++..+++++.|+++||+|||+++.++..+..++...+.+++|++.+++.|+++|++.+...+....+..|..++++|+
T Consensus 52 ~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 131 (394)
T PRK11652 52 YLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFILGTLVALFAHSLTVLIAASAIQGLGTGVGGVMARTLPRDLYEGTQLR 131 (394)
T ss_pred HHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHHHH
Confidence 45788999999999999999999999999999999999999999999999999999999988888888999999999999
Q ss_pred chhchHHHHHHHHHHHHHHHhhhcccCCccchHHHHhhHHHHHHHH-HHhhcCCcChHHHHhcCCHHHHHHHHHHhcChh
Q 014616 82 GLVSTNVLMITSGQFLSYLVNLAFTEVPGTWRWMLGVSAVPAIIQF-VLMLFMPESPRWLFMKSDKEKAILVLSKIYDIA 160 (421)
Q Consensus 82 ~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~Wr~~f~~~~~~~l~~~-~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~ 160 (421)
+..+....+...+..+++.++..+.+.. +||+.|++.++..++.. +...+.||+++.. +++
T Consensus 132 ~~~~~~~~~~~~~~~~g~~i~~~l~~~~-g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~------------ 193 (394)
T PRK11652 132 HANSLLNMGILVSPLLAPLIGGLLTTLF-GWRACYLFLLLLGAGVTFSMARWMPETRPAD-----ARR------------ 193 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcc-ChHHHHHHHHHHHHHHHHHHHHhCCccCccc-----cch------------
Confidence 8888888888888888888777665544 59999998876655443 3345677765310 000
Q ss_pred hhHHHHHHHHHHHHHHHhhcccccHHHhhcchhHHHHHHHHHHHHHHHhhcCcceehhchHHHHHH-cCCCChHHHHHHH
Q 014616 161 RLEDEIDHLSAAAEEELRKKKTVRYLDVFKSKEIRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQM-AGFQSNQLALLLS 239 (421)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~ 239 (421)
++ ....+++.+++|..+........... +......+.+.+.++ .|.+..+.+....
T Consensus 194 --------------~~----~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 250 (394)
T PRK11652 194 --------------TR----VLASYRTLLSNRRFNCYLLMLIGTLA-----GIAVFEACSGVLMGAVLGLSSMTVSILFI 250 (394)
T ss_pred --------------hH----HHHHHHHHHcChHHHHHHHHHHHHHH-----HHHHHHHhChHHHHHHcCCCHHHHHHHHH
Confidence 00 00123345566655543322211111 111111223444544 6777666555544
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCChhHHHHhhHHHHHHHHHHHHHHhhCCCCCCCcchhHHHHHHHHHHHHHhhccccccc
Q 014616 240 LAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLALYIAFFAPGMGPVP 319 (421)
Q Consensus 240 ~~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 319 (421)
.. ....+++..+.+++.||.+++.. .......++.+.+......... ..+....+..... +......|..
T Consensus 251 ~~-~~~~~~g~~~~~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~-~g~~~~~~~~ 320 (394)
T PRK11652 251 LP-IPAAFFGAWFAGRPNKRFSTLMW--QSVICCLLAGLLMWIPGWFGVM------NVWTLLVPAALFF-FGAGMLFPLA 320 (394)
T ss_pred HH-HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhccc------cHHHHHHHHHHHH-HHHHHHHHHH
Confidence 43 34456777777888888773222 2222222222221111100000 1112222211111 1111223555
Q ss_pred ceeccccCccchhhhhhHHHHHHHHHHHHHHHHHhHHHH
Q 014616 320 WTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVA 358 (421)
Q Consensus 320 ~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~ 358 (421)
.++..|.+| +.++.+.++.++...++..+++...+...
T Consensus 321 ~~~~~~~~~-~~~g~~~~~~~~~~~lg~~~~~~~~~~~~ 358 (394)
T PRK11652 321 TSGAMEPFP-YLAGTAGALLGGLQNIGSGLAALLSAMLP 358 (394)
T ss_pred HHHHHhhcc-ccchHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 566678777 56899999999888888888776665443
|
|
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=99.90 E-value=6.6e-22 Score=186.60 Aligned_cols=305 Identities=16% Similarity=0.235 Sum_probs=196.2
Q ss_pred chhhhHHHHhhhhhhhcccchhHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHhhhhhhhhhHHHHHhhcCCCCCcc
Q 014616 2 ALVGAIVGAASGGWINDAYGRKKATLLADVVFTAGAIIMAAAPDPYVLILGRLLVGLGVGIASVTAPVYIAEASPSEVRG 81 (421)
Q Consensus 2 ~~ig~~~g~~~~g~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~s~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg 81 (421)
..+++.+++++.|+++||+|||+++.++.++..++...+ .+++++.+++.|+++|++.+...+....++.|++| ++|+
T Consensus 44 ~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~g~~~~~~~~~~~~~~~~~-~~~~ 121 (355)
T TIGR00896 44 PVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR-SAPGTALLFAGTALIGVGIAIINVLLPSLIKRDFP-QRVG 121 (355)
T ss_pred HHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH-HhccHHHHHHHHHHHHHHHHHHhccchHHHHHhCc-chhh
Confidence 357889999999999999999999999999988888887 78899999999999999999988888888999886 5899
Q ss_pred chhchHHHHHHHHHHHHHHHhhhcccCCc-cchHHHHhhHHHHHHHHHHhhcCCcChHHHHhcCCHHHHHHHHHHhcChh
Q 014616 82 GLVSTNVLMITSGQFLSYLVNLAFTEVPG-TWRWMLGVSAVPAIIQFVLMLFMPESPRWLFMKSDKEKAILVLSKIYDIA 160 (421)
Q Consensus 82 ~~~~~~~~~~~~g~~l~~~~~~~~~~~~~-~Wr~~f~~~~~~~l~~~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~ 160 (421)
++.+........|..+++.+...+....+ +||+.|.+.+...++... .++||.++. +++
T Consensus 122 ~~~~~~~~~~~~g~~i~~~~~~~l~~~~~~~w~~~f~~~~~~~~~~~~--~~~~~~~~~----~~~-------------- 181 (355)
T TIGR00896 122 LMTGLYSMALMGGAALAAAATVPLAQHSGGHWQQALAWWALPALLALL--AWIPQVRRR----VAA-------------- 181 (355)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH--HHhhhhccc----cCC--------------
Confidence 99998888888888888776655544332 499998876654433322 223333210 000
Q ss_pred hhHHHHHHHHHHHHHHHhhcccccHHHhhcchhHHHHHHHHHHHHHHHhhcCcceehhchHHHHHHcCCCChHHHHHHHH
Q 014616 161 RLEDEIDHLSAAAEEELRKKKTVRYLDVFKSKEIRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQMAGFQSNQLALLLSL 240 (421)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 240 (421)
.++++....++.+|+|..+........ ..........+.|.+.++.|.+..+.+.....
T Consensus 182 ----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~lp~~~~~~g~~~~~~g~~~~~ 240 (355)
T TIGR00896 182 ----------------NQTTTRLTPVRIWRSPLAWQVTVFFGL-----QSGLYYSLIGWLPAILISHGASAATAGSLLAL 240 (355)
T ss_pred ----------------CCCCCCCCCchhhcCHhHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 000011223456777766543322111 11112223345677777788877666665555
Q ss_pred HHHHHHHHHHHHHHHHHhhcC-ChhHHHHhhHHHHHHHHHHHHHHhhCCCCCCCcchhHHHHHHHHHHHHHhhccccccc
Q 014616 241 AVAGTNAVGTIVGIYLIDHFG-RKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLALYIAFFAPGMGPVP 319 (421)
Q Consensus 241 ~~~~~~~~g~~~~g~l~dr~g-rr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 319 (421)
. ....+++.++.|++.||++ ||+....+.....++.+.+.+. . .. ..+.. ..++ .+......+..
T Consensus 241 ~-~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~--~--~~-----~~~~~---~~l~-g~~~g~~~~~~ 306 (355)
T TIGR00896 241 M-QLAQAASALLIPALARRVKDQRGIVAVLAVLQLVGLCGLLFA--P--MH-----GLWAW---ALVL-GLGQGGAFPLA 306 (355)
T ss_pred H-HHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHh--h--hh-----HHHHH---HHHH-HHhhhhHhHHH
Confidence 4 4557899999999999994 5555444444444443333221 0 00 00111 1111 11111222333
Q ss_pred ceeccc-cCccchhhhhhHHHHHHHHHHHHHHHHHhHHHHHHcCc
Q 014616 320 WTLNSE-VYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELVGT 363 (421)
Q Consensus 320 ~~~~~e-~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~ 363 (421)
.+...+ ..+++.++...++.+....+++.+++...+.+.+..|.
T Consensus 307 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~~~~g~ 351 (355)
T TIGR00896 307 LTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGVLHDISGN 351 (355)
T ss_pred HHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 344443 33456678888888888889989999999999888763
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.3e-21 Score=185.31 Aligned_cols=339 Identities=14% Similarity=0.090 Sum_probs=203.0
Q ss_pred chhhhHHHHhhhhhhhcccch-hHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHhhhhhhhhhHHHHHh--------
Q 014616 2 ALVGAIVGAASGGWINDAYGR-KKATLLADVVFTAGAIIMAAAPDPYVLILGRLLVGLGVGIASVTAPVYIA-------- 72 (421)
Q Consensus 2 ~~ig~~~g~~~~g~l~dr~Gr-r~~~~~~~~l~~i~~~~~~~~~s~~~l~~~R~l~G~g~g~~~~~~~~~i~-------- 72 (421)
..++.++++++.|.++||+|| |+++.++.++.++++.+..+.+|++.+.+.|++.|++.+...+...++..
T Consensus 47 ~~~~~~i~~~~~g~l~dr~g~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~g~ 126 (418)
T TIGR00889 47 TGIAAILMPILVGIIADKWLSAQKVYAVCHFAGALLLFFAAQVTTPAGMFPVLLANSLAYMPTIALTNSISYANLPQAGL 126 (418)
T ss_pred HHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhhcCC
Confidence 357889999999999999965 77888889999899999999999999999999999988777666555432
Q ss_pred hcCCCCCccchhchHHHHHHHHHHHHHHHhhhcccCCccchHHHHhhHHHHHHHHHHhhcCCcChHHHHhcCCHHHHHHH
Q 014616 73 EASPSEVRGGLVSTNVLMITSGQFLSYLVNLAFTEVPGTWRWMLGVSAVPAIIQFVLMLFMPESPRWLFMKSDKEKAILV 152 (421)
Q Consensus 73 e~~p~~~rg~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~Wr~~f~~~~~~~l~~~~~~~~~~esp~~~~~~~~~~~~~~~ 152 (421)
|......|.+..+. +|..+++.++..+.. ...|+. |++.++..++..+..+++||+|+- +++++..
T Consensus 127 ~~~~~~~~~r~~G~------lG~~ig~~l~g~l~~-~~~~~~-f~~~~~~~~~~~~~~~~~~e~~~~---~~~~~~~--- 192 (418)
T TIGR00889 127 DVVTDFPPIRVMGT------IGFIAAMWAVSLLDI-ELSNIQ-LYITAGSSALLGVFALTLPDIPVA---KSTAKMS--- 192 (418)
T ss_pred CchhcCCCeeeehh------HHHHHHHHHHHHhcc-cchhHH-HHHHHHHHHHHHHHHhcCCCCCCC---ccccccC---
Confidence 22222334444442 455555555544422 223554 555555555555555677887631 0000000
Q ss_pred HHHhcChhhhHHHHHHHHHHHHHHHhhcccccHHHhhcchhHHHHHHHHHHHHHHHhhcCcceehhchHHHHHHcCCCC-
Q 014616 153 LSKIYDIARLEDEIDHLSAAAEEELRKKKTVRYLDVFKSKEIRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQMAGFQS- 231 (421)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~- 231 (421)
.+ ++.....++.+|+|.++............. .....+.|.+.++.|.+.
T Consensus 193 ---------------------~~---~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~g~~~~ 243 (418)
T TIGR00889 193 ---------------------IK---VMLGLDAFILFKNKRMAIFFFFSMLLGAPL-----QITNIFGNGFLHEFGRNPE 243 (418)
T ss_pred ---------------------HH---HHhhhhHHHHhcCCCeeeHHHHHHHHHhHH-----HHHHHhHHHHHHHhccccc
Confidence 00 000112334667776554433322211111 111123355555555432
Q ss_pred -------hHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHhhHHHHHHHHHHHHHHhhCCCCCCCcchhHHHHHHH
Q 014616 232 -------NQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGL 304 (421)
Q Consensus 232 -------~~~~~~~~~~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 304 (421)
...+..... .....+++.+..++++||+|||+.+..+.....+..+.+... .. .. ... +......
T Consensus 244 ~~~~~~~~~~g~~~~~-~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~~---~~--~~-~~~-~~l~l~~ 315 (418)
T TIGR00889 244 FADSFVVKNASIWMSL-SQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAYG---DP--EY-FGY-ALLFLSM 315 (418)
T ss_pred ccchhhhhhHHHHHHH-HHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHc---Cc--ch-hhH-HHHHHHH
Confidence 233443333 334467888999999999999998877666555544333221 10 00 000 1111111
Q ss_pred HHHHHHhhcccccccceeccccCccchhhhhhHHHH-HHHHHHHHHHHHHhHHHHHHcC------cchhhHHHHHHHHHH
Q 014616 305 ALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSA-TVNWISNLIVAQTFLTVAELVG------TGATFLILAGIAVLA 377 (421)
Q Consensus 305 ~~~~~~~~~g~~~~~~~~~~e~~p~~~r~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~g------~~~~~~~~~~~~~~~ 377 (421)
.+.... .....+....+..|.+|++.|+++.|+.+ +...++..+++.+.+.+.+..| |...|.+.+.+.++.
T Consensus 316 ~l~g~~-~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~ 394 (418)
T TIGR00889 316 IVYGCA-FDFFNISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFAGYIAIL 394 (418)
T ss_pred HHHHHH-HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHH
Confidence 111111 11122444466789999999999999997 5678899999999998888753 567788888888887
Q ss_pred HHHHHhhccCCCCCC
Q 014616 378 VVFVILFVPETQGLT 392 (421)
Q Consensus 378 ~~~~~~~~~et~~~~ 392 (421)
.++..++.||+++.-
T Consensus 395 ~~l~~~~~~~~~~~~ 409 (418)
T TIGR00889 395 AVLFMIFFKYSHNAI 409 (418)
T ss_pred HHHHHHHhCCcccCC
Confidence 777777788875543
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=6.9e-22 Score=188.84 Aligned_cols=322 Identities=15% Similarity=0.133 Sum_probs=203.2
Q ss_pred hhhhHHHHhhhhhhhcccchhHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHhhhhhhhhhHHHHHhhcCCCCCccc
Q 014616 3 LVGAIVGAASGGWINDAYGRKKATLLADVVFTAGAIIMAAAPDPYVLILGRLLVGLGVGIASVTAPVYIAEASPSEVRGG 82 (421)
Q Consensus 3 ~ig~~~g~~~~g~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~s~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg~ 82 (421)
.++.++++++.|+++||+|||+++.++.++..++.++.++++|++.+++.|.+.|.+.+...+....+..|..|+++|++
T Consensus 53 ~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (395)
T PRK10054 53 LTIGVVFSLGFGILADKFDKKRYMLLAITAFASGFIAIPLVNNVTLVVLFFALINCAYSVFSTVLKAWFADNLSSTSKTK 132 (395)
T ss_pred HHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhHHHH
Confidence 46778889999999999999999999999999999999999999999999999998888888889999999999999999
Q ss_pred hhchHHHHHHHHHHHHHHHhhhcccCCccchHHHHhhHHHHHHHHHH-hhcCCcChHHHHhcCCHHHHHHHHHHhcChhh
Q 014616 83 LVSTNVLMITSGQFLSYLVNLAFTEVPGTWRWMLGVSAVPAIIQFVL-MLFMPESPRWLFMKSDKEKAILVLSKIYDIAR 161 (421)
Q Consensus 83 ~~~~~~~~~~~g~~l~~~~~~~~~~~~~~Wr~~f~~~~~~~l~~~~~-~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~ 161 (421)
..+......+.|..+++.++..+.. . +||..|++.++..++..+. .+++||+++. +++++
T Consensus 133 ~~g~~~~~~~lg~~igp~l~~~l~~-~-g~~~~f~~~~~~~~i~~i~~~~~~~~~~~~----~~~~~------------- 193 (395)
T PRK10054 133 IFSLNYTMLNIGWTVGPPLGTLLVM-Q-SINLPFWLAAICSAFPLVFIQIWVQRSEKA----IATET------------- 193 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-h-ccCcHHHHHHHHHHHHHHHHHHHHhccccc----cccch-------------
Confidence 9999888889999999888876653 3 5999999887766665443 3345544310 00000
Q ss_pred hHHHHHHHHHHHHHHHhhcccccHHHhhcchhHHHHHHHHHHHHHHHhhcCcceehhchHHHHH---HcCCCChHHHHHH
Q 014616 162 LEDEIDHLSAAAEEELRKKKTVRYLDVFKSKEIRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQ---MAGFQSNQLALLL 238 (421)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~g~~~~~~~~~~ 238 (421)
++ . .+.++.+++|+++.............. ....+.+.+.. +.+.+....+...
T Consensus 194 ------------~~---~---~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~g~~~ 250 (395)
T PRK10054 194 ------------GS---V---WSPSVLLQDKALLWFTCSGFLASFVSG-----AFASCISQYVMVVADSDFAEKVVAVVL 250 (395)
T ss_pred ------------hh---h---hhhhhhccCceehHHHHHHHHHHHHHH-----HhhhhHHHHHHHhcccchHHHHHHHHH
Confidence 00 0 011345677766554433222111110 00012222222 2233222333222
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCChhHHHHhhHHHHHHHHHHHHHHhhCCCCCCCcchhHHHHHHHHHHHHHhhcccccc
Q 014616 239 SLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLALYIAFFAPGMGPV 318 (421)
Q Consensus 239 ~~~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 318 (421)
.. ............+++.||.++|+.+..+.....++...+... . . .. +........+ ........|.
T Consensus 251 ~~-~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~---~--~---~~--~~~~~~~~~~-~~g~~~~~p~ 318 (395)
T PRK10054 251 PV-NAAMVVSLQYSVGRRLNAANIRPLMTAGTLCFVIGLVGFIFS---G--N---SL--LLWGMSAAVF-TVGEIIYAPG 318 (395)
T ss_pred Hh-hhhheeeehhHHHHHHccCCchhHHHHHHHHHHHHHHHHHHc---c--h---HH--HHHHHHHHHH-HHHHHHHHhh
Confidence 22 222233445677899999999987765554444443333211 0 0 01 1111111111 1111122355
Q ss_pred cceeccccCccchhhhhhHHHHHHHHHHHHHHHHHhHHHHHHcCcchhhHHHHHHHHHHHH
Q 014616 319 PWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELVGTGATFLILAGIAVLAVV 379 (421)
Q Consensus 319 ~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 379 (421)
..+...+..|++.|+...+..+ ...+|..+++...+.+.|..|....+++++....++..
T Consensus 319 ~~~~~~~~~p~~~~~~~~~~~~-~~~~G~~~Gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~ 378 (395)
T PRK10054 319 EYMLIDHIAPPGMKASYFSAQS-LGWLGAAINPLVSGVILTTLPPWSLFVILALAIVAAWL 378 (395)
T ss_pred HHHHHHHhCCcccceehHhHHH-HHHHHHHHHHHHHHHHHHHcChhhHHHHHHHHHHHHHH
Confidence 5567788889999998887654 67788999999999999998876666665554444433
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1e-21 Score=212.18 Aligned_cols=350 Identities=14% Similarity=0.056 Sum_probs=212.0
Q ss_pred chhhhHHHHhhhhhhhcccchhHHHHH---HHHHHHHHHHHHHhcCChhHHHHHHHHHHhhhhhhhhhHHHHHhhcCCCC
Q 014616 2 ALVGAIVGAASGGWINDAYGRKKATLL---ADVVFTAGAIIMAAAPDPYVLILGRLLVGLGVGIASVTAPVYIAEASPSE 78 (421)
Q Consensus 2 ~~ig~~~g~~~~g~l~dr~Grr~~~~~---~~~l~~i~~~~~~~~~s~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~ 78 (421)
.++++++.+++.|+++||+|||+++.. ..+...+....+...+|+++++++|+++|++.+...++..+++.|++|++
T Consensus 61 ~~l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~l~gi~~a~~~p~~~a~l~~~~~~~ 140 (1140)
T PRK06814 61 FILPFFIFSALAGQLADKYDKAKLAKILKFAEIGIAALAIYGFHLNSVPLLFAALFLMGIHSALFGPIKYSILPDHLNKD 140 (1140)
T ss_pred HHHHHHHHhhhHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhchHHHHhhHhhcCcc
Confidence 356788889999999999999997533 33333333344445589999999999999999999999999999999999
Q ss_pred CccchhchHHHHHHHHHHHHHHHhhhcccCCccchHHHHhhHHHHHHHHHHhhcCCcChHHHHhcCCHHHHHHHHHHhcC
Q 014616 79 VRGGLVSTNVLMITSGQFLSYLVNLAFTEVPGTWRWMLGVSAVPAIIQFVLMLFMPESPRWLFMKSDKEKAILVLSKIYD 158 (421)
Q Consensus 79 ~rg~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~Wr~~f~~~~~~~l~~~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~ 158 (421)
+|+++++.......+|.++|+++++.+.... +|++.|...++..++.++..+++|+++.-. ++.+...
T Consensus 141 ~~~~a~~~~~~~~~ig~~igp~l~g~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~--------- 208 (1140)
T PRK06814 141 ELLGANALVEAGTFIAILLGTIIGGLATISG-NFVILVALLMGIAVLGWLASLFIPKTGNAA--PDLKIDR--------- 208 (1140)
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHHHHHHhhCCCCCCCC--CCCeecc---------
Confidence 9999999999999999999999998876655 599999655555555555566676654210 0000000
Q ss_pred hhhhHHHHHHHHHHHHHHHhhcccccHHHhhcchhHHHHHHHHHHHHHHHhhcCcceehhchHHHHH-HcCCCChHHHHH
Q 014616 159 IARLEDEIDHLSAAAEEELRKKKTVRYLDVFKSKEIRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQ-MAGFQSNQLALL 237 (421)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~ 237 (421)
+ . . .+ ....++.+.+++.++...+........ ......+.|.+.+ ..|.+....+.+
T Consensus 209 ----~-~---~-----~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~p~~~~~~~g~~~~~~g~~ 266 (1140)
T PRK06814 209 ----N-I---I-----RS----TITLLKYAKADKRIWLAILGISWFWLV-----GAVVLSQLPLLAKETLGGDENVATLF 266 (1140)
T ss_pred ----c-h---H-----HH----HHHHHHHHhcCchHHHHHHHHHHHHHH-----HHHHHHHhHHHHHHHcCCchHHHHHH
Confidence 0 0 0 00 001244556677666544433222111 1112224455554 468877777766
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCChhHHHHhhHHHHHHHHHHHHHHhhCCCCCC---------CcchhHHHHHHHHHHH
Q 014616 238 LSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASS---------SGVYGWIAVIGLALYI 308 (421)
Q Consensus 238 ~~~~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~ 308 (421)
...... +.++|.++.|++.|+..+++....+..+..++.+.+.+.......... .....+.......++.
T Consensus 267 ~~~~~~-g~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 345 (1140)
T PRK06814 267 LAVFSV-GVAVGSFLASKLSEGRITLLYVPIGALLMGLFGLDLAFASSSVPAEPAQLKSILVFLSKRHGWRILIDLFGLA 345 (1140)
T ss_pred HHHHHH-HHHHHHHHHHHHhCCceeeeeehHHHHHHHHHHHHHHhcccccccccccccchhhhhcccccHHHHHHHHHHH
Confidence 655544 478999999999988776665443333333322222221000000000 0001122222222221
Q ss_pred HHhhcccccccceeccccCccchhhhhhHHHHHHHHHHHHHHHHHhHHHHHH-cCcchhhHHHHHHHHHHHHHHHhhccC
Q 014616 309 AFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAEL-VGTGATFLILAGIAVLAVVFVILFVPE 387 (421)
Q Consensus 309 ~~~~~g~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~e 387 (421)
++.....+...++..+..|++.||++.|+.++.+.++..+++...+.+.+. .+....+++.+...++.....+...|+
T Consensus 346 -~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (1140)
T PRK06814 346 -AAGGLYIVPLFAALQAWANPAHRARVIAANNVLNAAFMVAGTIILALLQALGFSIPWIILFIALANLIVAILILRLLPT 424 (1140)
T ss_pred -HHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHChH
Confidence 122222334567788999999999999999999999988888877776643 233334444444333333333333333
|
|
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.9e-21 Score=182.86 Aligned_cols=304 Identities=13% Similarity=0.110 Sum_probs=194.3
Q ss_pred chhhhHHHHhhhhhhhcccchhHHHHHHHHHHHHHHHHHHh---cCChhHHHHHHHHHHhhhhhhhhhHHHHHhhcCCCC
Q 014616 2 ALVGAIVGAASGGWINDAYGRKKATLLADVVFTAGAIIMAA---APDPYVLILGRLLVGLGVGIASVTAPVYIAEASPSE 78 (421)
Q Consensus 2 ~~ig~~~g~~~~g~l~dr~Grr~~~~~~~~l~~i~~~~~~~---~~s~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~ 78 (421)
..+|+.+++++.|++.||+|||+++..+.++++++.++... .+|++.+++.|++.|+|.|...+....++.+..|++
T Consensus 47 ~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~~l~~~~~~~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~ 126 (410)
T TIGR00885 47 FYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALGAFLFWPAAEIMNYTLFLVGLFILTAGLGFLETAANPYILVMGPES 126 (410)
T ss_pred HHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHh
Confidence 35789999999999999999999999999999999988643 468999999999999999999999999999999999
Q ss_pred CccchhchHHHHHHHHHHHHHHHhhhcccC-------------------------CccchHHHHhhHHHHHHHHHHhhc-
Q 014616 79 VRGGLVSTNVLMITSGQFLSYLVNLAFTEV-------------------------PGTWRWMLGVSAVPAIIQFVLMLF- 132 (421)
Q Consensus 79 ~rg~~~~~~~~~~~~g~~l~~~~~~~~~~~-------------------------~~~Wr~~f~~~~~~~l~~~~~~~~- 132 (421)
+|++..+..+.....|..+++.++..+... ..+||++|++.+...++..+...+
T Consensus 127 ~~~~~~~~~~~~~~lG~~~g~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~~~~~ 206 (410)
T TIGR00885 127 TATRRLNLAQSFNPFGSIIGMVVAQQLILSNLPHQSQDVLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVALLIMLT 206 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999988888888888888888776544211 124999999888766654443322
Q ss_pred -CCcChHHHHhcCCHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHhhcccccHHHhhcchhHHHHHHHHHHHHHHHhhc
Q 014616 133 -MPESPRWLFMKSDKEKAILVLSKIYDIARLEDEIDHLSAAAEEELRKKKTVRYLDVFKSKEIRLAFLAGAGLQAFQQFT 211 (421)
Q Consensus 133 -~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (421)
.||.+. ++ ++ +.+...+.++++|+|+++...+..+.....
T Consensus 207 ~~p~~~~-----~~-~~-----------------------------~~~~~~~~~~~~~~~~~~~~~l~~f~yvg~---- 247 (410)
T TIGR00885 207 KMPALNH-----SD-AK-----------------------------QISFSASLSRLARIRHYREGVIAQFFYVGV---- 247 (410)
T ss_pred cCCCCCc-----cc-cc-----------------------------cccchhhHHHHHhChhHHHHHHHHHHHHHH----
Confidence 343211 00 00 000001223456777665543332221111
Q ss_pred CcceehhchHHHHHHc--CCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHhhHHHHHHHHHHHHHHhhCCC
Q 014616 212 GINTVMYYSPTIVQMA--GFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSS 289 (421)
Q Consensus 212 ~~~~~~~~~~~~~~~~--g~~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~l~~~~~~~~~ 289 (421)
......+.+.+.++. +.+....+.+.... .+...+|.++++++.||+++|+.+........++.++... ...
T Consensus 248 -e~~~~s~l~~y~~~~~~~~~~~~a~~~~~~~-~~~~~vGR~~~~~l~~r~~~~~~l~i~~~~~~~~~ll~~~---~~~- 321 (410)
T TIGR00885 248 -QIMCWTFIIQYAVRLIPGMTAGFAANYNIGA-MVIFFISRFIGTWLISYLAAHKVLMAYAIIGMALCLGSIF---AGG- 321 (410)
T ss_pred -HHHHHHHHHHHHhhccCCCCHHHHHHHHHHH-HHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHH---cCC-
Confidence 111223444555443 23322223233333 3456899999999999999998766544443333322221 111
Q ss_pred CCCCcchhHHHHHHHHHHHHHhhcccccccceeccccCccchhhhhhHHHHHHHHHHHHHHHHHhHHHHHHc
Q 014616 290 ASSSGVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELV 361 (421)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 361 (421)
.. ....+.. ..++..++.|..++...+..+++.+..+.++.-+ .+|+.+.|.+.+.+.|..
T Consensus 322 -----~~---~~~~l~~-~glf~s~~fp~i~sl~~~~~g~~~~~~s~~l~~~--~~Gga~~p~l~G~~~d~~ 382 (410)
T TIGR00885 322 -----HV---GLYCLTL-CSAFMSLMFPTIYGIALKGLGQDTKYGAAGLVMA--IIGGGIVPPLQGFIIDMK 382 (410)
T ss_pred -----hH---HHHHHHH-HHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHH--HhccchHHHHHHHHHHHh
Confidence 01 1111111 1233334457888888888887765444444333 388889999999999854
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.89 E-value=2e-21 Score=187.54 Aligned_cols=341 Identities=16% Similarity=0.117 Sum_probs=185.0
Q ss_pred chhhhHHHHhhhhhhhcccchhHHHHHHHHHHHHHHHHHH---hcCChh-HHHHHHHHHHhhhhhhhhhHHHHHhhcCC-
Q 014616 2 ALVGAIVGAASGGWINDAYGRKKATLLADVVFTAGAIIMA---AAPDPY-VLILGRLLVGLGVGIASVTAPVYIAEASP- 76 (421)
Q Consensus 2 ~~ig~~~g~~~~g~l~dr~Grr~~~~~~~~l~~i~~~~~~---~~~s~~-~l~~~R~l~G~g~g~~~~~~~~~i~e~~p- 76 (421)
..++..+++++.|+++||+|||+++.++..+.+++..... .++... ..+...++.++..+.........+.++.+
T Consensus 55 ~~l~~~i~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (420)
T PRK09528 55 NSLFALLFQPLYGLISDKLGLKKHLLWIISGLLVLFGPFFIYVFAPLLQYNILLGAIVGGIYLGFGFLAGAGAIEAYIER 134 (420)
T ss_pred HHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccchhhhhhHHHH
Confidence 3578889999999999999999999887766655543221 111100 01112223333333322222222333322
Q ss_pred -CCCccchhchHHHHHHHHHHHHHHHhhhcccCCccchHHHHhhHHHHHHHHHHhhcC-CcChHHHHhcCCHHHHHHHHH
Q 014616 77 -SEVRGGLVSTNVLMITSGQFLSYLVNLAFTEVPGTWRWMLGVSAVPAIIQFVLMLFM-PESPRWLFMKSDKEKAILVLS 154 (421)
Q Consensus 77 -~~~rg~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~Wr~~f~~~~~~~l~~~~~~~~~-~esp~~~~~~~~~~~~~~~~~ 154 (421)
+++++...+........|..+++.++..+... +||+.|++.++..++.++..++. +|.|+....+ +++
T Consensus 135 ~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~--~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~------- 204 (420)
T PRK09528 135 VSRRSGFEYGRARMWGSLGWALCAFIAGILFNI--NPQINFWLGSGSALILLVLLFFAKPDAPSTAKVA-NAL------- 204 (420)
T ss_pred HHhhccccchhhHHhhhHHHHHHHHHHHHHHhc--CchHhHHHHHHHHHHHHHHHhcccccccchhhhc-cch-------
Confidence 23456666666667777888887777655432 59999998887776665555444 3432210000 000
Q ss_pred HhcChhhhHHHHHHHHHHHHHHHhhcccccHHHhhcchhHHHHHHHHHHHHHHHhhcCcceehhchHHHHH----HcCCC
Q 014616 155 KIYDIARLEDEIDHLSAAAEEELRKKKTVRYLDVFKSKEIRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQ----MAGFQ 230 (421)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~g~~ 230 (421)
+++.++.+.....+.+|+|.++...+.......... ......|.+.. +.+.+
T Consensus 205 -------------------~~~~~~~~~~~~~~~l~~~~~~~l~l~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~ 260 (420)
T PRK09528 205 -------------------GANASAVSLKDALALLKLPKFWFLVLYVIGVACFYD-----VFDQQFPNFFASFFATPEQG 260 (420)
T ss_pred -------------------hcccccccHHHHHHHccCCCeEeehHHHHHHHHHHH-----HHHHHHHHHHHHHHhccCcc
Confidence 000000001123346677765543332211111110 01111223222 22344
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHhhHHHHHHHHHHHHHHhhCCCCCCCcchhHHHHHHHHHHHHH
Q 014616 231 SNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLALYIAF 310 (421)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (421)
....+....... ...+++.++.|++.||+++|+....+.....+...++.+. .+ . +.......+ ...
T Consensus 261 ~~~~g~~~~~~~-~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~------~~---~--~~~~~~~~l-~g~ 327 (420)
T PRK09528 261 TRVFGYLNSFQV-FLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFA------TG---P--LEVSILKLL-HAF 327 (420)
T ss_pred hHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhc------cc---H--HHHHHHHHH-HHH
Confidence 344444444433 3467889999999999999998766555544444333221 11 1 111111111 111
Q ss_pred hhcccccccceeccccCccchhhhhhHH-HHHHHHHHHHHHHHHhHHHHHHcCcchhhHHHHHHHHHHHHHHHhhccCCC
Q 014616 311 FAPGMGPVPWTLNSEVYPEQYRGICGGM-SATVNWISNLIVAQTFLTVAELVGTGATFLILAGIAVLAVVFVILFVPETQ 389 (421)
Q Consensus 311 ~~~g~~~~~~~~~~e~~p~~~r~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~et~ 389 (421)
......+....+..|.+|++.|++..+. .++...++..+++...+.+.|..|++..|...+++.++..++.++..++.+
T Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G~~~~f~~~~~~~~i~~~~~~~~~~~~~ 407 (420)
T PRK09528 328 EVPFLLVGVFKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSIGFQGTYLILGGIVLLFTLISVFTLSGDR 407 (420)
T ss_pred HHHHHHHHHHHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 1111122334566788899999887655 567788999999999999999999988899888887776666655555433
|
|
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=99.88 E-value=5.1e-21 Score=180.63 Aligned_cols=298 Identities=12% Similarity=0.066 Sum_probs=184.5
Q ss_pred Hhhhhhhhccc-----chhHH-HHHHHHHHHHHHHHHHhcC---ChhHHHHHHHHHHhhhhhhhhhHHHHHhhcCCCCCc
Q 014616 10 AASGGWINDAY-----GRKKA-TLLADVVFTAGAIIMAAAP---DPYVLILGRLLVGLGVGIASVTAPVYIAEASPSEVR 80 (421)
Q Consensus 10 ~~~~g~l~dr~-----Grr~~-~~~~~~l~~i~~~~~~~~~---s~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~r 80 (421)
.+++|+++||+ ||||. +..+.++.++.+...++.+ +.+.+...+++.+++.+...+...+++.|++|+|+|
T Consensus 38 ~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r 117 (356)
T TIGR00901 38 KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLVPSTDLPLLAGLAFLIAFFSATQDIALDAWRLEILSDEEL 117 (356)
T ss_pred HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhh
Confidence 88999999998 89997 4677778888877778773 555677778888988888899999999999999999
Q ss_pred cchhchHHHHHHHHHHHHHHHhhhcccCCc-------cchHHHHhhHHHHHHHHHHhh-cCCcChHHHHhcCCHHHHHHH
Q 014616 81 GGLVSTNVLMITSGQFLSYLVNLAFTEVPG-------TWRWMLGVSAVPAIIQFVLML-FMPESPRWLFMKSDKEKAILV 152 (421)
Q Consensus 81 g~~~~~~~~~~~~g~~l~~~~~~~~~~~~~-------~Wr~~f~~~~~~~l~~~~~~~-~~~esp~~~~~~~~~~~~~~~ 152 (421)
+++.+....+...|.++++.++..+....+ +||..|++.++..++..+..+ ..||+++. +++.++
T Consensus 118 ~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~wr~~f~i~ai~~l~~~~~~~~~~~e~~~~---~~~~~~---- 190 (356)
T TIGR00901 118 GYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLITLWGYIFFWTALLILPGLLVTLFLAKEPQED---ASVPKP---- 190 (356)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccHHHHHHHHHHHHHHHHHHHHhccCCCcc---cccchh----
Confidence 999999999999999998888766654443 299999998887776655544 34664321 000000
Q ss_pred HHHhcChhhhHHHHHHHHHHHHHHHhhcccccHHHhhcchh---HHHHHHHHHHHHHHHhhcCcceehhchHHHHHHcCC
Q 014616 153 LSKIYDIARLEDEIDHLSAAAEEELRKKKTVRYLDVFKSKE---IRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQMAGF 229 (421)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 229 (421)
+ .+ +. ...++++++++. .+........ ..........+.|.+.++.|+
T Consensus 191 ------------~--------~~--~~--~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~l~~~g~ 241 (356)
T TIGR00901 191 ------------L--------TQ--AV--LKPIREFFQRKNMIQALLLLLLIVL-----YKLGDSAATVLTTLFLLDMGF 241 (356)
T ss_pred ------------H--------HH--HH--HHHHHHHHHhcCchHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHcCC
Confidence 0 00 00 012234455543 2222221111 111122223345666666888
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHhhHHHHHHHHHHHHHHhhCCCCCCCcchhHHHHHHHHHHHH
Q 014616 230 QSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLALYIA 309 (421)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (421)
+..+.+...........+++.++++++.||++||+.+..+.....+...+..+........+.+....+...... +...
T Consensus 242 ~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~ 320 (356)
T TIGR00901 242 SKEEIALVAKINGLLGAILGGLIGGIIMQPLNILYALLLFGIVQALTNAGFVWLASNGHHDGITFPHLLMLFLTI-TLEA 320 (356)
T ss_pred CHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchHHHHHHHH-HHHH
Confidence 877766666554444567899999999999999888766555444443333221101000000001112111111 1111
Q ss_pred HhhcccccccceeccccCccchhhhhhHHHHHHHH
Q 014616 310 FFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNW 344 (421)
Q Consensus 310 ~~~~g~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~ 344 (421)
+......+...++.+|.+|++.||+..|+.++..+
T Consensus 321 ~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~ 355 (356)
T TIGR00901 321 VTGGLGTVAFVAFLSKLSNPKFGATQMALLSSLSA 355 (356)
T ss_pred HHhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHh
Confidence 22222345567788999999999999988776543
|
|
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.4e-20 Score=177.70 Aligned_cols=320 Identities=13% Similarity=0.032 Sum_probs=202.2
Q ss_pred hhhhHHHHhhhhhhhcccchhHHH----HHHHHHHHHHHHHHHhcCChhHHHHHHHHHHhhhhhhhhhHHHHHhhcCCCC
Q 014616 3 LVGAIVGAASGGWINDAYGRKKAT----LLADVVFTAGAIIMAAAPDPYVLILGRLLVGLGVGIASVTAPVYIAEASPSE 78 (421)
Q Consensus 3 ~ig~~~g~~~~g~l~dr~Grr~~~----~~~~~l~~i~~~~~~~~~s~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~ 78 (421)
.++..+++++.|.++||+|||+.. ..+..++.+ ..+..+++++.+++.|.++|.+.+...+...++..|+ ++
T Consensus 49 ~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~l~~~~~l~~~~~~~~~p~~~al~~~~--~~ 124 (382)
T TIGR00902 49 LIARFAGGLFFAPLIKDANHIIIALRLLALASAIFAA--AFSAGAHNAWLLFIAIGLFALFFSAGMPIGDALANTW--QK 124 (382)
T ss_pred HHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH--HHHHhhhhHHHHHHHHHHHHHHHccchhHHHHHHHHH--HH
Confidence 456778889999999999985433 222222222 2445778999999999999999988888888887765 46
Q ss_pred CccchhchHHHHHHHHHHHHHHHhhhcccCCccchHHHHhhHHHHHHHHHHhhcCCcChHHHHhcCCHHHHHHHHHHhcC
Q 014616 79 VRGGLVSTNVLMITSGQFLSYLVNLAFTEVPGTWRWMLGVSAVPAIIQFVLMLFMPESPRWLFMKSDKEKAILVLSKIYD 158 (421)
Q Consensus 79 ~rg~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~Wr~~f~~~~~~~l~~~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~ 158 (421)
+|++..+......++|..++++++..+.+.. +||..|++.+...++.++. ..++|+++. +++++
T Consensus 125 ~~~~~~g~~~~~~slG~~~g~~l~g~l~~~~-g~~~~f~~~~~~~~~~~~~-~~~~~~~~~----~~~~~---------- 188 (382)
T TIGR00902 125 QFGLDYGKVRLIGSAAFIIGSALFGGLIGMF-DEQNILAILTAGLAFMLIG-FLIKPTIPP----KDAIP---------- 188 (382)
T ss_pred HcCCCccHHHHHHHHHHHHHHHHHHHHHHHc-ChhHHHHHHHHHHHHHHHH-HHcCCCCCC----Ccccc----------
Confidence 7888888888888899999998887776655 4999998866543332222 233333210 00000
Q ss_pred hhhhHHHHHHHHHHHHHHHhhcccccHHHhhcchhHHHHHHHHHHHHHHHhhcCcceehhchHHHHHHcCCCChHHHHHH
Q 014616 159 IARLEDEIDHLSAAAEEELRKKKTVRYLDVFKSKEIRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQMAGFQSNQLALLL 238 (421)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 238 (421)
+ .+.++..+.++++|+|+++........... .......+.|.++++.|.+....+...
T Consensus 189 ----------------~-~~~~~~~~~~~~l~~~~~~~~l~~~~l~~~-----~~~~~~~~~~~~l~~~g~s~~~~g~l~ 246 (382)
T TIGR00902 189 ----------------E-DESQGDSAFIALLKNPMNLRFLAAVCLIQG-----AHAAYYGFSAIYWQAAGISASATGLLW 246 (382)
T ss_pred ----------------c-cccccchhHHHHHcChHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCCHhHHHHHH
Confidence 0 000111235577888887765443322111 122222345666677899888877766
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCChhHHHHhhHHHHHHHHHHHHHHhhCCCCCCCcchhHHHHHHHHHHHHHhhcccccc
Q 014616 239 SLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLALYIAFFAPGMGPV 318 (421)
Q Consensus 239 ~~~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 318 (421)
.. .....+++..+.+++.||+++|+.+..+.....+....+... .+ .. .+..........+. ...+.
T Consensus 247 ~~-~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~~~------~~---~~-~~~~~q~l~g~~~~--~~~~~ 313 (382)
T TIGR00902 247 GI-GVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAIIGAI------EA---FP-LIFLLQILHCGTFA--VCHLA 313 (382)
T ss_pred HH-HHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHHhH------hh---HH-HHHHHHHHHHHHHH--HHHHH
Confidence 54 555678888999999999999998876666655555444321 00 01 11111111111111 11233
Q ss_pred cceeccccCccchhhhhhHHHHH-HHHHHHHHHHHHhHHHHHHcCcchhhHHHHHHHHHHHH
Q 014616 319 PWTLNSEVYPEQYRGICGGMSAT-VNWISNLIVAQTFLTVAELVGTGATFLILAGIAVLAVV 379 (421)
Q Consensus 319 ~~~~~~e~~p~~~r~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 379 (421)
...+.++. |++.|+++.++.++ ...++..+++..-+.+.|..|. ..|...+.+.+++.+
T Consensus 314 ~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~g~-~~~~~~~~~~~~~~~ 373 (382)
T TIGR00902 314 AMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPTLGA-GTFVFMAIIAAAAFF 373 (382)
T ss_pred HHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHHH
Confidence 34566677 99999999998764 4568888889999999998875 556666666665543
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.6e-19 Score=172.98 Aligned_cols=338 Identities=17% Similarity=0.231 Sum_probs=185.7
Q ss_pred hhhhHHHHhhhhhhhcccchhHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHhhhhhhhhhHHHHHhhcCCCCCccc
Q 014616 3 LVGAIVGAASGGWINDAYGRKKATLLADVVFTAGAIIMAAAPDPYVLILGRLLVGLGVGIASVTAPVYIAEASPSEVRGG 82 (421)
Q Consensus 3 ~ig~~~g~~~~g~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~s~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg~ 82 (421)
.++..++.++.|+++|.||||.+++.+.++..+|++.++-++|...++++-.+.|+|.|.... ....++|..|.|.|..
T Consensus 88 ~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~atA~~~~~~iag~~l~GvgaG~~~~-~~~~isEl~p~k~R~~ 166 (599)
T PF06609_consen 88 TLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCATAQNMNTFIAGMVLYGVGAGVQEL-AALAISELVPNKWRGL 166 (599)
T ss_pred HHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHhhcCCcHHHHHHHHHHHHHhhHHHHH-HHHHHHHhcccchhhh
Confidence 467788899999999999999999999999999999999999999999999999999888775 4556899999999986
Q ss_pred hhchHHHHHHHHHHHHHHHhhhcccCCccchHHHHhhHHHHHHHHHHh--hcCCcChHHHH-hcC-CHHH--HHHHHHHh
Q 014616 83 LVSTNVLMITSGQFLSYLVNLAFTEVPGTWRWMLGVSAVPAIIQFVLM--LFMPESPRWLF-MKS-DKEK--AILVLSKI 156 (421)
Q Consensus 83 ~~~~~~~~~~~g~~l~~~~~~~~~~~~~~Wr~~f~~~~~~~l~~~~~~--~~~~esp~~~~-~~~-~~~~--~~~~~~~~ 156 (421)
...............++.++..+.. ..+|||.|++.++...+.++.. +..|.+.+... .+. ++++ +.+.....
T Consensus 167 ~~~~~~~~~i~~~~~~~~ia~~~~~-~~~WRw~~~~~~i~~~i~~vl~~~fY~PP~~~~~~~~~~s~~~~l~~lD~IG~~ 245 (599)
T PF06609_consen 167 GLAIASIPFIITTWISPLIAQLFAA-HSGWRWIFYIFIIWSGIALVLIFFFYFPPPRAQLHGRKLSKREQLKELDWIGIF 245 (599)
T ss_pred HhHHHHHHHHhhhcccHHHHHHhcc-CCCcchHHHHHHHHHHHHHHHHHHHhCCCchhhhccccCcHHHHHHHhhHHHHH
Confidence 5554443333333344454443333 3469999999887666654443 23343322111 111 1111 11100000
Q ss_pred ----------c----Chhhh-----HHHH----H---HHHHHHHHHH--hhcccccHHHhhcchhHHHHHHHHHHHHHHH
Q 014616 157 ----------Y----DIARL-----EDEI----D---HLSAAAEEEL--RKKKTVRYLDVFKSKEIRLAFLAGAGLQAFQ 208 (421)
Q Consensus 157 ----------~----~~~~~-----~~~~----~---~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (421)
. ..... .+-. - .+...--.|. ..+++.-..+++|+++.....+....+...
T Consensus 246 L~~~Gl~LfLlgl~wgG~~~~~W~Sa~VIa~lviG~~~Lv~F~~wE~~~~~~~Pl~P~~Lf~~~r~~~~~lvi~fi~G~- 324 (599)
T PF06609_consen 246 LFIAGLALFLLGLSWGGYPYYPWKSAHVIAPLVIGFVLLVAFVVWEWFGAPKDPLFPHRLFKDRRGFAALLVISFISGM- 324 (599)
T ss_pred HHHHHHHHHHHHHhccCCCCCCCCCccchhhHHHHHHHHHHHHHhhhhccCCCCcCCHHHhccchHHHHHHHHHHHHHH-
Confidence 0 00000 0000 0 0000011222 223455556788885443322211111111
Q ss_pred hhcCccee-hhchHHHHHHcCCCCh--HHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHH-HhhHHHHHHHHHHHHHH
Q 014616 209 QFTGINTV-MYYSPTIVQMAGFQSN--QLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLAL-SSLAGVIISLVLLSWAF 284 (421)
Q Consensus 209 ~~~~~~~~-~~~~~~~~~~~g~~~~--~~~~~~~~~~~~~~~~g~~~~g~l~dr~grr~~~~-~~~~~~~~~~~~l~~~~ 284 (421)
.++.. .+|+......++.+.. ....+.+.+......+|.++.|.+..+++|-|..+ .+...+.+...++.
T Consensus 325 ---~~~s~~~l~p~~~~~vf~~d~~~~~~~~~~s~~~~fg~~~g~~i~g~l~~~ir~~Kw~li~~~~~~ta~~Gama--- 398 (599)
T PF06609_consen 325 ---NFFSVNILWPQQVVNVFGSDPISITEIGWISSPVGFGSCAGAVILGLLFSKIRHIKWQLIFGSVLMTAFCGAMA--- 398 (599)
T ss_pred ---HHHHHHHHHHHHHhhhccCCCcccceeehhhhhHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHH---
Confidence 11222 3444444444444432 11233334444445677788888998888766543 33222222112221
Q ss_pred hhCCCCCCCcchhHHHHHHHHHHHHHhhcccccccceeccccCccchhhhhhHHHHHHHHHHHHHHHHHhHH
Q 014616 285 ISGSSASSSGVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLT 356 (421)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~ 356 (421)
... ..+......+..+.++ ...+......+.++-..|++.-+++.|+..++..+|+.++..++..
T Consensus 399 ~~~-~~n~~~~i~~~~l~g~------giG~~~~~~~~~~ql~~p~~~ig~a~gL~~s~R~~GGsIg~aIy~~ 463 (599)
T PF06609_consen 399 AVR-PDNKNAAIAFLVLAGF------GIGGILVPAIVIAQLIVPDEDIGTATGLTGSIRSIGGSIGYAIYNA 463 (599)
T ss_pred Hcc-CCCcchHHHHHHHHHH------hHHHHHHHHHHeeEeeeCchHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 111 1122222222222221 1112223334555667799999999999999999988887666544
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.3e-19 Score=176.94 Aligned_cols=114 Identities=13% Similarity=0.235 Sum_probs=98.7
Q ss_pred HHHHhhhhhhhcc-cchhHHHHHHHHHHHHHHHHHHhcCChhH-HHHHHHHHHhhhhhhhhhHHHHHhhcCCCC--Cccc
Q 014616 7 IVGAASGGWINDA-YGRKKATLLADVVFTAGAIIMAAAPDPYV-LILGRLLVGLGVGIASVTAPVYIAEASPSE--VRGG 82 (421)
Q Consensus 7 ~~g~~~~g~l~dr-~Grr~~~~~~~~l~~i~~~~~~~~~s~~~-l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~--~rg~ 82 (421)
.+..+++|+++|| +||||++.++.+++.+++..++++++... +.+.|.++|+|.|...+...+++.|.+|++ +|++
T Consensus 64 ~~~~~~~G~laDr~~G~r~~~~~g~~~~~~g~~~~~~~~~~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~ 143 (489)
T PRK10207 64 YGLISIGGYVGDHLLGTKRTIVLGAIVLAIGYFMTGMSLLKPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPRLDG 143 (489)
T ss_pred HHHHhhHHHhhhhccchHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHhccccccCCHHHHHHHhcCCCchhhhc
Confidence 3445689999999 99999999999999999999999887554 458999999999999999999999999887 4577
Q ss_pred hhchHHHHHHHHHHHHHHHhhhcccCCccchHHHHhhHH
Q 014616 83 LVSTNVLMITSGQFLSYLVNLAFTEVPGTWRWMLGVSAV 121 (421)
Q Consensus 83 ~~~~~~~~~~~g~~l~~~~~~~~~~~~~~Wr~~f~~~~~ 121 (421)
..+......++|..+++.++..+.... +||+.|++.++
T Consensus 144 ~~~~~~~~~nig~~~g~~l~g~l~~~~-gw~~~F~i~~i 181 (489)
T PRK10207 144 AFTLFYMSINIGSLISLSLAPVIADKF-GYSVTYNLCGA 181 (489)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhh-ChHHHHHHHHH
Confidence 788888899999999998888877666 49999998654
|
|
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.3e-19 Score=172.74 Aligned_cols=317 Identities=12% Similarity=0.012 Sum_probs=189.0
Q ss_pred hhhhHHHHhhhhhhhcccchh----HHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHhhhhhhhhhHHHHHhhcCCCC
Q 014616 3 LVGAIVGAASGGWINDAYGRK----KATLLADVVFTAGAIIMAAAPDPYVLILGRLLVGLGVGIASVTAPVYIAEASPSE 78 (421)
Q Consensus 3 ~ig~~~g~~~~g~l~dr~Grr----~~~~~~~~l~~i~~~~~~~~~s~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~ 78 (421)
.++..+++++.|++.||+||| +.+.+..+.. ....+...+|++.+++.|+++|++.+...+...++..++ ++
T Consensus 49 ~l~~~l~~~~~g~l~dr~g~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~--~~ 124 (382)
T PRK11128 49 LVARFLGSLLIAPRVKDPSQLIPALRLLALLTLLF--AVAFWFGAHSFWLLFVAIGLFNLFFSPLVPLTDALANTW--QK 124 (382)
T ss_pred HHHHHhhhHHHHHHHhhhcchHHHHHHHHHHHHHH--HHHHHHhcccHHHHHHHHHHHHHHHcccccHHHHHHHHH--Hh
Confidence 467788899999999999984 3332222222 223344568899999999999999998888888888877 34
Q ss_pred CccchhchHHHHHHHHHHHHHHHhhhcccCCccchHHHHhhHHHHHHHHHHhhcCCcChHHHHhcCCHHHHHHHHHHhcC
Q 014616 79 VRGGLVSTNVLMITSGQFLSYLVNLAFTEVPGTWRWMLGVSAVPAIIQFVLMLFMPESPRWLFMKSDKEKAILVLSKIYD 158 (421)
Q Consensus 79 ~rg~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~Wr~~f~~~~~~~l~~~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~ 158 (421)
+|++..+........|..++++++..+.+.. +||..|++.+...++..+...+.||.++ +++++
T Consensus 125 ~~~~a~~~~~~~~~lg~~igp~lgg~l~~~~-g~~~~f~~~~~~~~~~~~~~~~~~~~~~-----~~~~~---------- 188 (382)
T PRK11128 125 QIGLDYGKVRLWGSIAFVIGSALTGKLVSWF-GEQAILWILTAGVASMLLGQLLRPTIMP-----QGESR---------- 188 (382)
T ss_pred hccCCcchHHHHHHHHHHHHHHHHHHHHHHc-ChhHHHHHHHHHHHHHHHHHHccCCCCC-----ccccc----------
Confidence 5677777777777889999998888776655 4999998877654444443344454321 00000
Q ss_pred hhhhHHHHHHHHHHHHHHHhhcccccHHHhhcchhHHHHHHHHHHHHHHHhhcCcceehhchHHHHHHcCCCChHHHHHH
Q 014616 159 IARLEDEIDHLSAAAEEELRKKKTVRYLDVFKSKEIRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQMAGFQSNQLALLL 238 (421)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 238 (421)
+ ..++...++++++|+|.++............ ......+.|.+.++.|.+..+.+...
T Consensus 189 ----------------~-~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~-----~~~~~~~~~~~~~~~g~s~~~~g~~~ 246 (382)
T PRK11128 189 ----------------Q-QESAGWPAWKALLKEPTVWRFLLCVSLLQGS-----HAAYYGFSAIYWQAAGYSASTIGYLW 246 (382)
T ss_pred ----------------c-ccccccchHHHHHcChhHHHHHHHHHHHHHH-----hHhHHHHHHHHHHHCCCCHhHHHHHH
Confidence 0 0001123456788888776544432222111 11122234556677888877777665
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCChhHHHHhhHHHHHHHHHHHHHHhhCCCCCCCcchhHHHHHHHHHHHHHhhcccccc
Q 014616 239 SLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLALYIAFFAPGMGPV 318 (421)
Q Consensus 239 ~~~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 318 (421)
... ....++...+.+++.||.++|+.+..+.....+....+... .+ .+.......+...... ...+.
T Consensus 247 ~~~-~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~~~------~~-----~~~~~~~~~l~g~~~~-~~~~~ 313 (382)
T PRK11128 247 SLG-VVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLMGST------TA-----LPWLIVIQILHCGTFT-VCHLA 313 (382)
T ss_pred HHH-HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhh------hh-----HHHHHHHHHHHHHHHH-HHHHH
Confidence 543 34567788889999999999998766555544443333211 00 1111111111111111 11223
Q ss_pred cceeccccCccchhhhhhHHHHHH-HHHHHHHHHHHhHHHHHHcCcchhhHHHHHHHHH
Q 014616 319 PWTLNSEVYPEQYRGICGGMSATV-NWISNLIVAQTFLTVAELVGTGATFLILAGIAVL 376 (421)
Q Consensus 319 ~~~~~~e~~p~~~r~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 376 (421)
...+..+. |++.+++..+..+.. ..++..+++.+.+.+.|..|. ..++..+.+.+.
T Consensus 314 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~g~-~~~~~~~~~~~~ 370 (382)
T PRK11128 314 AMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQHLGA-GVFWVMALVALP 370 (382)
T ss_pred HHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHH
Confidence 33444555 555567777776533 456667888888999898875 344444444443
|
|
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.8e-20 Score=177.24 Aligned_cols=332 Identities=13% Similarity=0.095 Sum_probs=192.5
Q ss_pred chhhhHHHHhhhhhhhcccchhHHHHHHHHHHHHHHHHH---HhcC-----ChhHHHHHHHHHHhhhhhhhhhHHHHHhh
Q 014616 2 ALVGAIVGAASGGWINDAYGRKKATLLADVVFTAGAIIM---AAAP-----DPYVLILGRLLVGLGVGIASVTAPVYIAE 73 (421)
Q Consensus 2 ~~ig~~~g~~~~g~l~dr~Grr~~~~~~~~l~~i~~~~~---~~~~-----s~~~l~~~R~l~G~g~g~~~~~~~~~i~e 73 (421)
..++..+++++.|+++||+|||+.+..+.+..+++.... .+.+ .+..+++.|+++|++.+...+....+..|
T Consensus 47 ~~l~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 126 (396)
T TIGR00882 47 ISLFSILFQPLFGLISDKLGLKKHLLWIISGLLVLFAPFFIYVFGPLLQSNILVGAIVGGLYLGFVFSAGAGAIEAYIEK 126 (396)
T ss_pred HHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHH
Confidence 357788999999999999999999988777666544432 1221 23345667889999888888888888777
Q ss_pred cCCCCCccchhchHHHHHHHHHHHHHHHhhhcccCCccchHHHHhhHHHHHHHHHHhhc-CCcChHHHHhcCCHHHHHHH
Q 014616 74 ASPSEVRGGLVSTNVLMITSGQFLSYLVNLAFTEVPGTWRWMLGVSAVPAIIQFVLMLF-MPESPRWLFMKSDKEKAILV 152 (421)
Q Consensus 74 ~~p~~~rg~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~Wr~~f~~~~~~~l~~~~~~~~-~~esp~~~~~~~~~~~~~~~ 152 (421)
..++ ++...+......+.|..+++.++..+.. . +||+.|++.+...++..+..+. .||+|+... ++ +
T Consensus 127 ~~~~--~~~~~g~~~~~~~~g~~~g~~~~g~l~~-~-~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~---- 194 (396)
T TIGR00882 127 VSRN--SNFEYGKARMFGCVGWALCASIAGILFS-I-DPQIVFWLGSGFALILMLLLMFAKPKAPSSAT---VA-N---- 194 (396)
T ss_pred hhhh--cccccchhhhhcccHHHHHHHHHhhhhc-c-CchHHHHHHHHHHHHHHHHHHHhCCCCchhhh---hh-c----
Confidence 5433 2334445555566777777777665533 2 6999999988777765544433 455432100 00 0
Q ss_pred HHHhcChhhhHHHHHHHHHHHHHHHhhcccccHHHhhcchhHHHHHHHHHHHHHHHhhcCcceehhchHHHHHHc----C
Q 014616 153 LSKIYDIARLEDEIDHLSAAAEEELRKKKTVRYLDVFKSKEIRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQMA----G 228 (421)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----g 228 (421)
..+.+.++++..+..+.+|+|+++............ +.....+.|.+.++. +
T Consensus 195 -------------------~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~-----~~~~~~~~~~y~~~~~~~~~ 250 (396)
T TIGR00882 195 -------------------ALGANASAFSLKLALELFRQRKFWMFVLYVVGVACV-----YDVFDQQFANFFTSFFATPQ 250 (396)
T ss_pred -------------------ccccccCCCCHHHHHHHHcCCcHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHhccccc
Confidence 000000011112355678888765543332211111 111111233444332 3
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHhhHHHHHHHHHHHHHHhhCCCCCCCcchhHHHHHHHHHHH
Q 014616 229 FQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLALYI 308 (421)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (421)
.+....+...... ....+++....+++.||++||+....+.....+...+... . .+. . +..........
T Consensus 251 ~~~~~~g~~~~~~-~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~~---~---~~~---~-~~~~~~~l~g~ 319 (396)
T TIGR00882 251 QGTRVFGYVTTMG-ELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSSF---A---TTA---L-EVVILKMLHAF 319 (396)
T ss_pred cchHHHHHHHHHH-HHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHh---c---CCh---H-HHHHHHHHHHH
Confidence 3333444444443 3446777888999999999999876655544443333221 1 111 1 11111111111
Q ss_pred HHhhcccccccceeccccCccchhhhhhHH-HHHHHHHHHHHHHHHhHHHHHHcCcchhhHHHHHHHHHHHHHHH
Q 014616 309 AFFAPGMGPVPWTLNSEVYPEQYRGICGGM-SATVNWISNLIVAQTFLTVAELVGTGATFLILAGIAVLAVVFVI 382 (421)
Q Consensus 309 ~~~~~g~~~~~~~~~~e~~p~~~r~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 382 (421)
. ..........+..+..|++.+++..+. .+....+++.+++.+.+.+.+..|++..|.+.+...++...+..
T Consensus 320 ~--~~~~~~~~~~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~~G~~~~f~~~~~~~~i~~~~~~ 392 (396)
T TIGR00882 320 E--VPFLLVGCFKYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYDSIGFQGAYLVLGCIVLLFTLISV 392 (396)
T ss_pred H--HHHHHHHHHHHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHHhcccHHHHHHHHHHHHHHHHHHH
Confidence 1 111111222345677788888776665 56778899999999999999999998888888888776655543
|
|
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.6e-20 Score=180.84 Aligned_cols=313 Identities=14% Similarity=0.159 Sum_probs=187.6
Q ss_pred hhhhHHHHhhhhhhhcc----cchhH-HHHHHHHHHHHHHHHHHhcCCh------hHHHHHHHHHHhhhhhhhhhHHHHH
Q 014616 3 LVGAIVGAASGGWINDA----YGRKK-ATLLADVVFTAGAIIMAAAPDP------YVLILGRLLVGLGVGIASVTAPVYI 71 (421)
Q Consensus 3 ~ig~~~g~~~~g~l~dr----~Grr~-~~~~~~~l~~i~~~~~~~~~s~------~~l~~~R~l~G~g~g~~~~~~~~~i 71 (421)
.+..++.+++.|.++|| +|||| .+..+.+.++++..++.+.++. ..+++.+++.+++.+.......++.
T Consensus 45 ~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~ 124 (437)
T TIGR00792 45 RILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLFTTPDFSATGKLVYAYITYILLGLFYSFVNIPYWSLV 124 (437)
T ss_pred HHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHHHHHHhhcccHhhCc
Confidence 35678889999999997 68854 6777888888888888877653 4556788899998888887888888
Q ss_pred hhcC-CCCCccchhchHHHHHHHHHHHHHHHhhhcc------cCCccchHHHHhhHHHHHHHHHH-hhcCCcChHHHHhc
Q 014616 72 AEAS-PSEVRGGLVSTNVLMITSGQFLSYLVNLAFT------EVPGTWRWMLGVSAVPAIIQFVL-MLFMPESPRWLFMK 143 (421)
Q Consensus 72 ~e~~-p~~~rg~~~~~~~~~~~~g~~l~~~~~~~~~------~~~~~Wr~~f~~~~~~~l~~~~~-~~~~~esp~~~~~~ 143 (421)
.|.. ++++|++..+........|..++..+...+. ....+||+.+.+.++.+++..+. ....||.++.
T Consensus 125 ~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~e~~~~---- 200 (437)
T TIGR00792 125 PAITLDPRERESLSTFRRFGATLGGLLVAVIVLPLVSYFGGGDDKFGWFMFALVLALIGVVSLIICFFGTKERYSE---- 200 (437)
T ss_pred ccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccHHHHHHHHHHHHHHHHHHHHcCCEecCCC----
Confidence 9987 5688998888777666666655443322221 11236999999888777766544 4556775421
Q ss_pred CCHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHhhcccccHHHhhcchhHHHHHHHHHHHHHHHhhcCcceehhchHHH
Q 014616 144 SDKEKAILVLSKIYDIARLEDEIDHLSAAAEEELRKKKTVRYLDVFKSKEIRLAFLAGAGLQAFQQFTGINTVMYYSPTI 223 (421)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (421)
.+.++ +.+.+.....++++++|+++............... ...+.+++
T Consensus 201 ~~~~~---------------------------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~ 248 (437)
T TIGR00792 201 IPKNI---------------------------EKKLSLKQIFKALFKNDQLLILCLAYLFYNLAFNI-----KNGVQVYY 248 (437)
T ss_pred CCccc---------------------------ccCCCHHHHHHHHhCCHHHHHHHHHHHHHHHHHHH-----Hcchhhee
Confidence 00000 00000011244567788776544333222111111 11112222
Q ss_pred HHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHhhHHHHHHHHHHHHHHhhCCCCCCCcchhHHHHHH
Q 014616 224 VQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIG 303 (421)
Q Consensus 224 ~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 303 (421)
.+....+....+..... .....+++.++.++++||+++|+....+.....++.+.+.+. . . . . +.....
T Consensus 249 ~~~~~~~~~~~~~~~~~-~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~---~--~---~-~-~~~~~~ 317 (437)
T TIGR00792 249 FTYVLGDPELFSYMGSI-AIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFFFA---G--S---N-L-PLILVL 317 (437)
T ss_pred EeeecCChHHHHHHHHH-HHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHc---c--h---h-H-HHHHHH
Confidence 33221233344444333 345578889999999999999998776655544444333221 1 0 0 0 111111
Q ss_pred HHHHHHHhhcccccccceeccccCc-------cchhhhhhHHHHHHHHHHHHHHHHHhHHHHHHcCc
Q 014616 304 LALYIAFFAPGMGPVPWTLNSEVYP-------EQYRGICGGMSATVNWISNLIVAQTFLTVAELVGT 363 (421)
Q Consensus 304 ~~~~~~~~~~g~~~~~~~~~~e~~p-------~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~ 363 (421)
..+ ..+......+..+++.+|..| ++.+|...|+.+....+++.+++.+.+.+.+..|+
T Consensus 318 ~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~~~G~ 383 (437)
T TIGR00792 318 IIL-AGFGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLILGIIGY 383 (437)
T ss_pred HHH-HHHHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 111 111111223445566666654 55678899999999999999999999988887665
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.5e-18 Score=169.21 Aligned_cols=124 Identities=20% Similarity=0.313 Sum_probs=108.4
Q ss_pred hhhhHHHHhhhhhhhcc-cchhHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHhhhhhhhhhHHHHHhhcCCCCC--
Q 014616 3 LVGAIVGAASGGWINDA-YGRKKATLLADVVFTAGAIIMAAAPDPYVLILGRLLVGLGVGIASVTAPVYIAEASPSEV-- 79 (421)
Q Consensus 3 ~ig~~~g~~~~g~l~dr-~Grr~~~~~~~~l~~i~~~~~~~~~s~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~-- 79 (421)
.++..++++++|+++|| +|||+++.++.++.+++.++.++++++..+.+.|++.|+|.|...+...++++|++|+++
T Consensus 58 ~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~ 137 (475)
T TIGR00924 58 SALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLMLGHFMLAMSIYPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMP 137 (475)
T ss_pred HHHHHHHHhhHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcc
Confidence 46788999999999999 899999999999999999999999999999999999999999999999999999998764
Q ss_pred -ccchhchHHHHHHHHHHHHHHHhhhcccCCccchHHHHhhHHHHHHHH
Q 014616 80 -RGGLVSTNVLMITSGQFLSYLVNLAFTEVPGTWRWMLGVSAVPAIIQF 127 (421)
Q Consensus 80 -rg~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~Wr~~f~~~~~~~l~~~ 127 (421)
|+...+......++|..+++.++..+.... +||+.|++.++..++..
T Consensus 138 ~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~-g~~~~f~~~~~~~~~~~ 185 (475)
T TIGR00924 138 RRDGGFTLFYMSINIGSFISPLLAGVIAENY-GYHVGFNLAAVGMVIGL 185 (475)
T ss_pred cccceehhHHHHHHHHHHHHHHHHHHHHHhc-ChHHHHHHHHHHHHHHH
Confidence 788888888899999999998887766544 49999998775444443
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.4e-18 Score=169.30 Aligned_cols=331 Identities=17% Similarity=0.195 Sum_probs=209.6
Q ss_pred hhhhHHHHhhhhhhhcccchhHHHHHHHHHHHHHHHHHHh-----cCChhHHHHHHHHHHhhhhhhhhhHHHHHhhcCCC
Q 014616 3 LVGAIVGAASGGWINDAYGRKKATLLADVVFTAGAIIMAA-----APDPYVLILGRLLVGLGVGIASVTAPVYIAEASPS 77 (421)
Q Consensus 3 ~ig~~~g~~~~g~l~dr~Grr~~~~~~~~l~~i~~~~~~~-----~~s~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~ 77 (421)
.+..++-++++|.++||+.|||+++.+-++.++.....++ ..+.+.+++.-++.|++.+...|+-.+++.|..|+
T Consensus 55 ~LP~~Llsl~aG~laDr~drrrili~~~~~~~~~~~~L~~l~~~~~~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~ 134 (524)
T PF05977_consen 55 TLPILLLSLFAGALADRFDRRRILILSQLLRALVALLLAVLAFFGLLSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPK 134 (524)
T ss_pred HHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH
Confidence 3456677889999999999999999999887766555433 24678899999999999999999999999999999
Q ss_pred CCccchhchHHHHHHHHHHHHHHHhhhcccCCccchHHHHhhHHHHHHHHHHhhcCCcChHHHHhcCCHHHHHHHHHHhc
Q 014616 78 EVRGGLVSTNVLMITSGQFLSYLVNLAFTEVPGTWRWMLGVSAVPAIIQFVLMLFMPESPRWLFMKSDKEKAILVLSKIY 157 (421)
Q Consensus 78 ~~rg~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~Wr~~f~~~~~~~l~~~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~ 157 (421)
++...+.+.+....++..++||.+++.+....+ =.+.|.+.++.-++.+.....++..+. +++.++
T Consensus 135 ~~L~~A~al~s~~~niar~iGPalgG~Lva~~G-~~~~f~inalsfl~~i~~l~~~~~~~~----~~~~~~--------- 200 (524)
T PF05977_consen 135 EDLPAANALNSISFNIARIIGPALGGILVAFFG-AAAAFLINALSFLISILALLRWKPPPP----PSSLPR--------- 200 (524)
T ss_pred hhHHHHHHHHHHHHHHHHhccchHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHcccccc----ccccch---------
Confidence 999989999888888888888888876544333 567788877644443333333322111 000000
Q ss_pred ChhhhHHHHHHHHHHHHHHHhhcccccHHHhhcchhHHHHHHHHHHHHHHHhhcCcceehhchHHHHH-HcCCCChHHHH
Q 014616 158 DIARLEDEIDHLSAAAEEELRKKKTVRYLDVFKSKEIRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQ-MAGFQSNQLAL 236 (421)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~ 236 (421)
+... . .-+ ..++-..++|.++..+........+ ........|.+.+ ..|.+....+.
T Consensus 201 ---------e~~~----~--~l~--~G~ryv~~~~~l~~~l~~~~~~~l~-----~~a~~aLlPl~a~~~l~~~a~~yGl 258 (524)
T PF05977_consen 201 ---------ERFF----S--ALR--EGLRYVRSSPPLRSVLLRSFLFNLF-----ASAVWALLPLFARDVLGGGASGYGL 258 (524)
T ss_pred ---------hhhh----h--hHH--HHHHHHhcchHHHHHHHHHHHHHHh-----hhHHHHhhhHHHHHHhCCcHHHHHH
Confidence 0000 0 000 0122233455544433322221111 1111223566664 56888777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHhhHHHHHHHHHHHHHHhhCCCCCCCcchhHHHHHHHHHHHHHhhcccc
Q 014616 237 LLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLALYIAFFAPGMG 316 (421)
Q Consensus 237 ~~~~~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 316 (421)
+......+ .++|+++.+++.+|+++++....+.....++.+.+.+. . ..+.....+.+.. +......
T Consensus 259 l~a~~gvG-ai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal~------~-----~~~~~~~~l~l~G-~~~~~~~ 325 (524)
T PF05977_consen 259 LLAAFGVG-AILGALLLPRLRRRLSSRRLVLLASLLFALALLLLALS------P-----SFWLALIALFLAG-AAWIIAN 325 (524)
T ss_pred HHHHHHHH-HHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHhcc------h-----HHHHHHHHHHHHH-HHHHHHH
Confidence 76665544 68888888888888888777655554444433333221 0 0122222111111 1111112
Q ss_pred cccceeccccCccchhhhhhHHHHHHHHHHHHHHHHHhHHHHHHcCcchhhHHHHHHHHHHHHHHH
Q 014616 317 PVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELVGTGATFLILAGIAVLAVVFVI 382 (421)
Q Consensus 317 ~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 382 (421)
....+...+..|++.||+..++..+....+..+++...+.+.+..|....+.+.++..++..++..
T Consensus 326 ~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~~~g~~~al~~a~~~lll~~~~~~ 391 (524)
T PF05977_consen 326 SSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLADHFGVRTALLIAGAALLLSALIAL 391 (524)
T ss_pred HHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHH
Confidence 333456789999999999999999999988889999999999999987777776665555544443
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=99.81 E-value=1e-19 Score=182.41 Aligned_cols=260 Identities=15% Similarity=0.200 Sum_probs=171.9
Q ss_pred chhhhHHHHhhhhhhhcccchhHHHHHHHHHHHHHHHHHHhcC-------------------------------------
Q 014616 2 ALVGAIVGAASGGWINDAYGRKKATLLADVVFTAGAIIMAAAP------------------------------------- 44 (421)
Q Consensus 2 ~~ig~~~g~~~~g~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~------------------------------------- 44 (421)
..+|++++.++.|+++||+|||+.+.++.++++++++++++.+
T Consensus 77 ~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~alphf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~ 156 (633)
T TIGR00805 77 YEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFLLSLPHFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPT 156 (633)
T ss_pred hhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHHHhChHHhcCCccccccccccccccccccccccCCCCCCcccc
Confidence 4578999999999999999999999999999999999987753
Q ss_pred --------------ChhHHHHHHHHHHhhhhhhhhhHHHHHhhcCCCCCccchhchHHHHHHHHHHHHHHHhhhcccCC-
Q 014616 45 --------------DPYVLILGRLLVGLGVGIASVTAPVYIAEASPSEVRGGLVSTNVLMITSGQFLSYLVNLAFTEVP- 109 (421)
Q Consensus 45 --------------s~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg~~~~~~~~~~~~g~~l~~~~~~~~~~~~- 109 (421)
.+..++++|+++|+|.+...+...+++.|++|+++|+.+++.......+|+.+|++++..+....
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~ 236 (633)
T TIGR00805 157 QCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKNSPLYIGILESIAVFGPAFGYLLGSFCLQIYV 236 (633)
T ss_pred ccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCCccccHHHHHHHHHHHHhhhHHHHHHHHHHHhccc
Confidence 24567899999999999999999999999999999999999999999999999988887654321
Q ss_pred --------------------ccchHHHHhhHHHHHHHHHHhhcCCcC-hHHHHh-cCCHHHHHHHHHHhcChhhhHHHHH
Q 014616 110 --------------------GTWRWMLGVSAVPAIIQFVLMLFMPES-PRWLFM-KSDKEKAILVLSKIYDIARLEDEID 167 (421)
Q Consensus 110 --------------------~~Wr~~f~~~~~~~l~~~~~~~~~~es-p~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (421)
+.||..|++.++++++..+.++++|++ |+.... +.+.++... . +...++ .
T Consensus 237 d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~~l~~v~l~~~p~~lp~~~~~~~~~~~~~~~-~------~~~~~~-~ 308 (633)
T TIGR00805 237 DTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVALLTSIPFFFFPKALPKEGKRVNVDVHETEK-L------EKSEDK-S 308 (633)
T ss_pred ccccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhCccccCCcccccchhhhhhhc-c------cccccc-c
Confidence 237777888887777665555566654 321100 000000000 0 000000 0
Q ss_pred HHHHHHHHHHhhcccccHHHhhcchhHHHHHHHHHHHHHHHhhcCcceehhchHHHHH-HcCCCChHHHHHHHHHHHHHH
Q 014616 168 HLSAAAEEELRKKKTVRYLDVFKSKEIRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQ-MAGFQSNQLALLLSLAVAGTN 246 (421)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~ 246 (421)
........++.....+++++||.++...+..... ...++....+.|.+++ ..|.+..+.+.+.........
T Consensus 309 ---~~~~~~~~~~~~~~~~~Ll~n~~f~~~~l~~~~~-----~~~~~~~~~~lP~yl~~~~g~s~~~ag~l~~~~~i~~~ 380 (633)
T TIGR00805 309 ---RKKNSDITKDFPKIIKRLLCNPIYMLVILAQVID-----SLAFNGYITFLPKYLENQYGISSAEANFLIGVVNLPAA 380 (633)
T ss_pred ---chhhhhhHHHHHHHHHHHHcCcHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHcCCcHHHHHHHhhhhhhhHH
Confidence 0000000011122356788998776554433222 1122333446777776 578888777766655444346
Q ss_pred HHHHHHHHHHHhhcCC--hhHHHHhhHHHHHHH
Q 014616 247 AVGTIVGIYLIDHFGR--KKLALSSLAGVIISL 277 (421)
Q Consensus 247 ~~g~~~~g~l~dr~gr--r~~~~~~~~~~~~~~ 277 (421)
++|.+++|+++||++. |+.........++++
T Consensus 381 ~vG~~l~G~l~~r~~~~~~~~~~~~~~~~~~~~ 413 (633)
T TIGR00805 381 GLGYLIGGFIMKKFKLNVKKAAYFAICLSTLSY 413 (633)
T ss_pred HHHHhhhhheeeeecccHHHHHHHHHHHHHHHH
Confidence 7899999999999984 444444444444443
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.3e-17 Score=159.52 Aligned_cols=325 Identities=14% Similarity=0.017 Sum_probs=185.7
Q ss_pred HHhhh-hhhhcccchhHHHHHHHHHH-HHHHHHHH-h--cCC-hhHHHHHHHHHHhhhhhhhhhHHHHHhhcCCCCCccc
Q 014616 9 GAASG-GWINDAYGRKKATLLADVVF-TAGAIIMA-A--APD-PYVLILGRLLVGLGVGIASVTAPVYIAEASPSEVRGG 82 (421)
Q Consensus 9 g~~~~-g~l~dr~Grr~~~~~~~~l~-~i~~~~~~-~--~~s-~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg~ 82 (421)
.+++. ++..||+||||.+++...+. ++.....+ + ..+ ...++..-++.++..+...+....+..|..++++++.
T Consensus 54 ~~p~~~~~~~~~~g~r~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~~~~ 133 (390)
T TIGR02718 54 WAPLVDNWWSWRLGRRRSWVLPMQCLVSACLASLALVGPDVAGAGWAVGLLACASLASATQDIATDGMAAEHFNGRTLAK 133 (390)
T ss_pred HHHHHhccccccCCcchhHHHHHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhhH
Confidence 34444 55788899999875555332 21222222 1 222 2233445556667777777788888888888888887
Q ss_pred hhchHHHHHHHHHHHHHHHhhhcccCCccchHHHHhhHHHHHHHHHHhhcCCcChHHHHhcCCHHHHHHHHHHhcChhhh
Q 014616 83 LVSTNVLMITSGQFLSYLVNLAFTEVPGTWRWMLGVSAVPAIIQFVLMLFMPESPRWLFMKSDKEKAILVLSKIYDIARL 162 (421)
Q Consensus 83 ~~~~~~~~~~~g~~l~~~~~~~~~~~~~~Wr~~f~~~~~~~l~~~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (421)
..+....+...|..++......+.+.. +||..|++.+...++..+..++++|+++. +++.++
T Consensus 134 ~~~~~~~g~~lG~~~g~~~~~~l~~~~-gw~~~f~~~a~l~~~~~~~~~~~~~~~~~---~~~~~~-------------- 195 (390)
T TIGR02718 134 GNAVQIAGVMIGFFGGGAGTLVLFGKF-GQRPAFLLVACVPLASLVCVLWLKDRAVA---SPEAPL-------------- 195 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh-CHHHHHHHHHHHHHHHHHHHHHcCCCCcC---ccccch--------------
Confidence 777666677777777776555554444 59999999887776655554444433210 000000
Q ss_pred HHHHHHHHHHHHHHHhhcccccHHHhhcchhHHHHHHHHHHHHHHHhhcCcceehhchHHHHHHcCCCChHHHHHHHHHH
Q 014616 163 EDEIDHLSAAAEEELRKKKTVRYLDVFKSKEIRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQMAGFQSNQLALLLSLAV 242 (421)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 242 (421)
++..+.++.+|+|..+........... .......+.+.+.++.|++..+.+.......
T Consensus 196 -----------------~~~~~~~~~l~~~~~~~~~~~~~l~~~-----~~~~~~~~~~~~l~~~G~s~~~ig~~~~~~~ 253 (390)
T TIGR02718 196 -----------------ARRASLFRFFRRPLAWSLLALALLSAM-----TAVSGFGLSKLYLVDAGWPLEWIGRLGMAGG 253 (390)
T ss_pred -----------------hhHHHHHHHHcCcCHHHHHHHHHHHHH-----HHHHHHHHhhHHHHhcCCCHHHHHHHHhHHH
Confidence 000123456777766544333222111 1111112345556678998888777666554
Q ss_pred HHHHHHHHHHHHHHHhhcCChhHHHHhhHHHHHHHHHHHHHHhhCCCCCCCcchhHHHHHHHHHHHHHhhccccccccee
Q 014616 243 AGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLALYIAFFAPGMGPVPWTL 322 (421)
Q Consensus 243 ~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 322 (421)
....+++..++|++.||+++|+....+.....+.... ........ . .+. . ........+. .+......+..++.
T Consensus 254 ~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~-~~~~~~~~-~-~~~-~-~~~~~~~~~~-~~~~g~~~~~~~~~ 327 (390)
T TIGR02718 254 AVTVLLGCGGGAWLVRRAGLWRTFILGVGLAGSLALL-WFAQAAFW-L-APG-I-AVAWSCSAFG-SLITGITSVAIYTA 327 (390)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH-HHHHHHcc-c-CCc-H-HHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 4446778899999999999998876554433222211 11111100 0 001 1 1111111110 00001111223334
Q ss_pred ccccCcc-chhhhhhHHHHHHHHHHHHHHHHHhHHHHHHcCcchhhHHHHHHHHHHHH
Q 014616 323 NSEVYPE-QYRGICGGMSATVNWISNLIVAQTFLTVAELVGTGATFLILAGIAVLAVV 379 (421)
Q Consensus 323 ~~e~~p~-~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 379 (421)
..+..++ +.+++..+..++...++..+++.+.+.+.+..|+...|...+...+++..
T Consensus 328 ~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~~G~~~~f~~~~~~~l~a~~ 385 (390)
T TIGR02718 328 FMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLTDRFGYAGGFLSGTVLAVLAIL 385 (390)
T ss_pred HHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHH
Confidence 4455555 88999999999999999999999999999998887777776665555433
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=99.81 E-value=4.3e-19 Score=165.95 Aligned_cols=135 Identities=13% Similarity=0.128 Sum_probs=116.0
Q ss_pred chhhhHHHHhhhhhhhcccchhHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHhhhhhhhhhHHHHHhhcCCCCCcc
Q 014616 2 ALVGAIVGAASGGWINDAYGRKKATLLADVVFTAGAIIMAAAPDPYVLILGRLLVGLGVGIASVTAPVYIAEASPSEVRG 81 (421)
Q Consensus 2 ~~ig~~~g~~~~g~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~s~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg 81 (421)
+..++++.++++|+++||+|.|+++.++.+.+++.+++.++++++..+.+.|++.|+++|+.. +...++..|+|+++|+
T Consensus 71 F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa~Sl~~L~i~R~llGvaEA~~~-A~~syI~~WfP~kER~ 149 (511)
T TIGR00806 71 LPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLGTSVWHMQLMEVFYSVTMAARI-AYSSYIFSLVPPSRYQ 149 (511)
T ss_pred HHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHHHHH
Confidence 467999999999999999999999999999999999999999999999999999999999999 9999999999999999
Q ss_pred chhchHHHHHHHHHHHHHHHhhhcccCCccchHHHHhhH---HHHHHHHHHhhcCCcChHH
Q 014616 82 GLVSTNVLMITSGQFLSYLVNLAFTEVPGTWRWMLGVSA---VPAIIQFVLMLFMPESPRW 139 (421)
Q Consensus 82 ~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~Wr~~f~~~~---~~~l~~~~~~~~~~esp~~ 139 (421)
++.+....+...|..++++++..+. .. +||+-+.++- ....+.+++.+++|..++-
T Consensus 150 ratsi~~sg~~vG~~Ia~~L~qll~-s~-gWr~y~~Ln~Isl~s~~~a~~~a~~LP~~~~s 208 (511)
T TIGR00806 150 RAAAYSRAAVLLGVFLSSVLGQLLV-TL-GWISYSTLNIISLVFMTFSVFLALFLKRPKRS 208 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-hc-CchhHHHHHHHHHHHHHHHHHHHHhCCCCchh
Confidence 9999999999999999988887733 33 5998665543 2333445556777755543
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.2e-18 Score=155.63 Aligned_cols=322 Identities=17% Similarity=0.162 Sum_probs=183.6
Q ss_pred chhhhHHHHhhhhhhhcccchhHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHhhhhhhhhhHHHHHhhcCCCCCcc
Q 014616 2 ALVGAIVGAASGGWINDAYGRKKATLLADVVFTAGAIIMAAAPDPYVLILGRLLVGLGVGIASVTAPVYIAEASPSEVRG 81 (421)
Q Consensus 2 ~~ig~~~g~~~~g~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~s~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg 81 (421)
+.++..+.++.+|.++||+|||+++.++++..++...+-+++.|+..+++.|++.|+.-|-.. +..++++|+.++|+|+
T Consensus 77 F~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S~~F~afv~aR~l~Gi~kgnl~-v~rAiisdV~sek~r~ 155 (451)
T KOG2615|consen 77 FSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALSRNFAAFVLARFLGGIFKGNLS-VIRAIISDVVSEKYRP 155 (451)
T ss_pred HHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCchH-HHHHHHHhhcChhhcc
Confidence 467888999999999999999999999999999999999999999667777999999887655 5778999999999999
Q ss_pred chhchHHHHHHHHHHHHHHHhhhccc---CCccchHHHHh----hHHHHHH-HHHHhhcCCcChHHHHhcCCHHHHHHHH
Q 014616 82 GLVSTNVLMITSGQFLSYLVNLAFTE---VPGTWRWMLGV----SAVPAII-QFVLMLFMPESPRWLFMKSDKEKAILVL 153 (421)
Q Consensus 82 ~~~~~~~~~~~~g~~l~~~~~~~~~~---~~~~Wr~~f~~----~~~~~l~-~~~~~~~~~esp~~~~~~~~~~~~~~~~ 153 (421)
..++.....+.+|.++||.+++++.. ..+ +.+|.+ ..+.+.. .....+++||+-.-+..+ ++.
T Consensus 156 l~ms~v~~a~~lGfilGPmIGgyla~f~~~~g--~~p~alP~~~v~i~a~~~v~~~~~~lpETL~~rk~~---~~~---- 226 (451)
T KOG2615|consen 156 LGMSLVGTAFGLGFILGPMIGGYLAQFSSISG--SYPFALPCLLVFILAAGDVTFFPWFLPETLPLRKRN---DEH---- 226 (451)
T ss_pred ceeeeeehhhhcchhhcchhhhHHHhhHhhhc--cCchHHHHHHHHHHHHHHHHHHHHhCCccccchhhc---ccc----
Confidence 99999999999999999999988765 222 122222 2222222 233456789983322111 000
Q ss_pred HHhcChhhhHHHHHHHHHHHHHHHhhcccccHHHhhcchhHHH--HHHHHHHHHHHHhhcCcceehhchHHHH-HHcCCC
Q 014616 154 SKIYDIARLEDEIDHLSAAAEEELRKKKTVRYLDVFKSKEIRL--AFLAGAGLQAFQQFTGINTVMYYSPTIV-QMAGFQ 230 (421)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~ 230 (421)
.+..+..++. ++..+-+.......++|++... .....+....+.+...+....++.+.+. +..|++
T Consensus 227 ----------~~~~~~~~~~-~~~~~~~~~~~v~~lrn~p~~~~i~~~~i~~l~~~ly~~l~s~~~~t~~~l~~~rfg~s 295 (451)
T KOG2615|consen 227 ----------STLQEAADDR-LALLKFARIFKVAALRNPPLLDFISVLRIFGLHYFLYLELFSGLENTVLFLTHGRFGYS 295 (451)
T ss_pred ----------cchhhhhhhh-hhhcchhhhhhhhhhcCccccchHHHHHHHHHHHHHHHHHHHHHHhhHHHhhcCccCCC
Confidence 0000000000 0000000111122334433222 1111111222222211111222333332 346888
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChh-----HHHHhhHHHHHHHHHHHHHHhhCCCCCCCcchhHHHHHHHH
Q 014616 231 SNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKK-----LALSSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLA 305 (421)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~grr~-----~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (421)
+.+++.++... +..+.++.+.+..+..|.+ .+........-.+.++ ..... ....+ .+..
T Consensus 296 s~~~G~vl~~t----Gl~m~~~ql~~~~~l~~~~~~~~a~l~~~l~~~vP~~lll-----s~~~~-~~~l~-----~~s~ 360 (451)
T KOG2615|consen 296 SMQQGKVLSTT----GLLMLVIQLALVPILPRYKGNIKAVLLFSLLLIVPAFLLL-----SLART-PVVLY-----LGST 360 (451)
T ss_pred hhhheeeeehh----hHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHHH-----hcccc-chhhh-----HHHH
Confidence 88877665443 3445555556566555444 2222222211111111 11111 11111 1112
Q ss_pred HHHHHhhcccccccceeccccCccchhhhhhHHHHHHHHHHHHHHHHHhHHHHHH
Q 014616 306 LYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAEL 360 (421)
Q Consensus 306 ~~~~~~~~g~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 360 (421)
++. +......+....+.....|++.||+..|+..+.+.++.+++|.+-+.+..+
T Consensus 361 l~s-f~~A~~vt~Lt~Lv~~~~~~~qrG~~~Gi~~Sl~alaRaiGPlv~g~i~~W 414 (451)
T KOG2615|consen 361 LKS-FSTASVVTCLTSLVHKYGPQSQRGTLNGIFRSLGALARAIGPLVSGVIFSW 414 (451)
T ss_pred HHH-HHHHHhhHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHhhhhhhheeEEE
Confidence 221 111222344456778888999999999999999999999998887655443
|
|
| >KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.80 E-value=2e-19 Score=174.43 Aligned_cols=359 Identities=17% Similarity=0.179 Sum_probs=216.6
Q ss_pred hHHHHhhhhhhhcccchhHHHHHHHHHHHHHHHHHHhcCChhHHHH-HHHHHHhhhhhhhhhHHHHHhhcCCCCCccchh
Q 014616 6 AIVGAASGGWINDAYGRKKATLLADVVFTAGAIIMAAAPDPYVLIL-GRLLVGLGVGIASVTAPVYIAEASPSEVRGGLV 84 (421)
Q Consensus 6 ~~~g~~~~g~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~s~~~l~~-~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg~~~ 84 (421)
..+..++.+.+.||+|.|.+.+.+.++.+++.++++|+++.+++++ .-++.|+|.|..+..+..++..++ +|+|+.+.
T Consensus 94 ~~~~gpl~s~l~~rfg~R~v~i~G~~v~~~g~~lssF~~~i~~l~lt~gvi~G~G~~~~~~paiviv~~YF-~kkR~lA~ 172 (509)
T KOG2504|consen 94 YLLAGPLVSALCNRFGCRTVMIAGGLVAALGLLLSSFATSLWQLYLTFGVIGGLGLGLIYLPAVVILGTYF-EKKRALAT 172 (509)
T ss_pred HHHhccHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhccchhhhcchhhhhhhHh-HHHHHHHH
Confidence 3445788999999999999999999999999999999999987765 669999999999999999999877 56688888
Q ss_pred chHHHHHHHHHHHHHHHhhhcccCCccchHHHHhhHHHHHHHHHHhhc-CCcChHHHHhcCCHHHHHHHHHHhcC-----
Q 014616 85 STNVLMITSGQFLSYLVNLAFTEVPGTWRWMLGVSAVPAIIQFVLMLF-MPESPRWLFMKSDKEKAILVLSKIYD----- 158 (421)
Q Consensus 85 ~~~~~~~~~g~~l~~~~~~~~~~~~~~Wr~~f~~~~~~~l~~~~~~~~-~~esp~~~~~~~~~~~~~~~~~~~~~----- 158 (421)
+....+..+|..+-+.+.-.+.... +||+.+++.+.+.+-.++.-.. -|.++.-... .++..+.......
T Consensus 173 Gia~~GsG~G~~~~~~l~~~l~~~~-G~r~~~l~~~~~~l~~~~~~~~~rp~~~~~~~~---~~~~~~~~~~~~~~~~~~ 248 (509)
T KOG2504|consen 173 GIAVSGTGVGTVVFPPLLKYLLSKY-GWRGALLIFGGISLNVLVAGALLRPLSPPKKPN---EEKDLRNSAASVESTPKP 248 (509)
T ss_pred hhhhccCCcceeeHHHHHHHHHHHh-CcHHHHHHHHHHHHHHHHHHHHcCCCCcCCCch---hhhhhccccccccccccc
Confidence 8877777777766555555555544 5999999888766554444333 3433221000 0000000000000
Q ss_pred -------hhhhH-----HHHHHHHHHHHHHH-hhccccc---HHHhhcchhHHHHHHHHHHHHHHHhhcCcceehhchHH
Q 014616 159 -------IARLE-----DEIDHLSAAAEEEL-RKKKTVR---YLDVFKSKEIRLAFLAGAGLQAFQQFTGINTVMYYSPT 222 (421)
Q Consensus 159 -------~~~~~-----~~~~~~~~~~~~~~-~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (421)
.+... .+.+...+.+++.. ...+... ..++++++.+....+... ....++.....++|.
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ll~~~~fl~~~~~~~-----~~~~g~~~p~~~l~~ 323 (509)
T KOG2504|consen 249 VELRISERDSGLKKLSLSNLATLKRGPDKWRNSPLQAFLSMLDLSLLKDPKFLLLALSNL-----FAYLGFNVPFVYLPS 323 (509)
T ss_pred cccccccCCCCCCcccccchhhhhhCCccccccchhhhhhhhhHHHHcCchHHHHHHHHH-----HHHHHHHHHHHHHHH
Confidence 00000 00000000000000 0111111 257788876654333221 122234445567788
Q ss_pred HHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHhhHHHHHHHHHHHHHHhhCCCCCCCcchhHHHHH
Q 014616 223 IVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVI 302 (421)
Q Consensus 223 ~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 302 (421)
+.+..+++..+.+.+.+... +..+++.++.|++.|+...++..+......+.++..+.+.+.. .+..+.
T Consensus 324 ~~~~~g~~~~~aa~l~Siig-i~~i~gRi~~G~laD~~~~~~~~~~~~~ll~~gl~~~~~p~~~----------~~~~l~ 392 (509)
T KOG2504|consen 324 YAKSLGLSSNDAAFLLSIIG-VSDIIGRIILGLLADKPGIRALVLFLLTLLIAGLARLFLPFAT----------TYVGLI 392 (509)
T ss_pred HHhhcCCChhhhHHHHHHHH-HhhhhhhhhhhhhcCccccchHHHHHHHHHHHHHHHHHHHHhc----------cHHHHH
Confidence 88888999888877776654 5589999999999999884443332222222222222221111 111122
Q ss_pred HHHHHHHHhhcccccccceeccccCccchhhhhhHHHHHHHHHHHHHHHHHhHHHHHHcCc-chhhHHHHHHHHHHHHHH
Q 014616 303 GLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELVGT-GATFLILAGIAVLAVVFV 381 (421)
Q Consensus 303 ~~~~~~~~~~~g~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~ 381 (421)
.....+.+.......+......|+.+.+.-+.+.|+...++.++..+++.+.+.+.|..+. ...|+..+...+++. .+
T Consensus 393 ~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg~Y~~~f~~~g~~~~~s~-~~ 471 (509)
T KOG2504|consen 393 VFSILFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGLLYDITGNYDHAFYFCGLCFLLSA-VL 471 (509)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccceeeeeccCCeeeehhhcChHHHHHH-HH
Confidence 2222222222222333334667888888888899999999999999999999988888884 445555555555444 34
Q ss_pred Hhhcc
Q 014616 382 ILFVP 386 (421)
Q Consensus 382 ~~~~~ 386 (421)
++..|
T Consensus 472 ~~~~~ 476 (509)
T KOG2504|consen 472 LLILR 476 (509)
T ss_pred HHHhH
Confidence 44444
|
|
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.1e-16 Score=145.08 Aligned_cols=321 Identities=18% Similarity=0.204 Sum_probs=210.5
Q ss_pred chhhhHHHHhhhhhhhcccchhHHHHHHHHHHHHHHHHH---HhcCChhHHHHHHHHHHhhhhhhhhhHHHHHhhcCCCC
Q 014616 2 ALVGAIVGAASGGWINDAYGRKKATLLADVVFTAGAIIM---AAAPDPYVLILGRLLVGLGVGIASVTAPVYIAEASPSE 78 (421)
Q Consensus 2 ~~ig~~~g~~~~g~l~dr~Grr~~~~~~~~l~~i~~~~~---~~~~s~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~ 78 (421)
+.-|+.+++++.|++.+|+|+|+.++.++.++++++.+. +-..++..+++.-++.|.|.|........++....|++
T Consensus 57 ff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~avg~~lF~pAa~~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~ 136 (422)
T COG0738 57 FFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGAALFWPAASSKSYGFFLVALFILASGIGLLETAANPYVTLLGKPE 136 (422)
T ss_pred HHHHHHHHhccHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCch
Confidence 356899999999999999999999999999999999988 46778999999999999999999999999999999998
Q ss_pred CccchhchHHHHHHHHHHHHHHHhhhcccC------------------CccchHHHHhhHHHHHHHHHHhh--cCCcChH
Q 014616 79 VRGGLVSTNVLMITSGQFLSYLVNLAFTEV------------------PGTWRWMLGVSAVPAIIQFVLML--FMPESPR 138 (421)
Q Consensus 79 ~rg~~~~~~~~~~~~g~~l~~~~~~~~~~~------------------~~~Wr~~f~~~~~~~l~~~~~~~--~~~esp~ 138 (421)
+...-+...+.....|.+++|+++..+..+ ...||++|...+...++..+... ..||.+.
T Consensus 137 ~a~~rlnl~q~fn~lGa~~gp~~g~~lils~~~~~~~~~~~~~~~~~~~~~v~~pYl~~~~~lvll~v~~~~~k~p~~~~ 216 (422)
T COG0738 137 SAAFRLNLAQAFNGLGAILGPLLGSSLILSGVALTMSAAQILAIKGADASSVQFPYLILAGLLVLLAVLILLSKLPDLQV 216 (422)
T ss_pred hHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhccCCcCCc
Confidence 777777788888888888888777654331 12388888877665544444332 2344321
Q ss_pred HHHhcCCHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHhhcccccHHHhhcchhHHHHHHHHHHHHHHHhhcCcceehh
Q 014616 139 WLFMKSDKEKAILVLSKIYDIARLEDEIDHLSAAAEEELRKKKTVRYLDVFKSKEIRLAFLAGAGLQAFQQFTGINTVMY 218 (421)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (421)
- +++..++++....+++++|+++...+.-+..... -.....
T Consensus 217 ~----------------------------------~~~~~~~~~~~~~~l~~~~~~~~gvl~~FlYVG~-----Eva~gs 257 (422)
T COG0738 217 A----------------------------------APSLGASGSAGLSSLFQNKHLRLGVLAIFLYVGA-----EVAIGS 257 (422)
T ss_pred c----------------------------------cccccccccchHHHHHhChHHHHHHHHHHHHHhH-----HHHHHH
Confidence 0 0000111111356788888877654433222111 122234
Q ss_pred chHHHHHH-cCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHhhHHHHHHHHHHHHHHhhCCCCCCCcchh
Q 014616 219 YSPTIVQM-AGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYG 297 (421)
Q Consensus 219 ~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 297 (421)
+.+.+..+ .|.+..+. ..+...+.+...+|.+++.++.+|+...|.+.....+.++. +....+..+
T Consensus 258 fl~~y~~~~~g~~~~~a-a~~~s~~~~~~~vGRFig~~lm~~~~~~k~Laf~a~~~ill--~~~~~l~~g---------- 324 (422)
T COG0738 258 FLVSYLEELLGLNEQQA-AYYLSFFWVGFMVGRFIGSALMSRIKPEKYLAFYALIAILL--LLAVALIGG---------- 324 (422)
T ss_pred HHHHHHHhcCCccHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHH--HHHHHHhcC----------
Confidence 56666666 56555554 44445555667899999999999999888765433222221 111222111
Q ss_pred HHHHHHHHHHHHHhhcccccccceeccccCccchhhhhhHHHHHHHHHHHHHHHHHhHHHHHHcCcchhhHHHHHHHHHH
Q 014616 298 WIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELVGTGATFLILAGIAVLA 377 (421)
Q Consensus 298 ~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 377 (421)
...+. ....+.++...+.|..++...+..|.+ -. ..+..-....+|+.+.|++.+++.|+.|.+..+...-..|.+-
T Consensus 325 ~v~~~-~l~~ig~F~simfPTIfslal~~l~~~-ts-~~s~~l~maivGGAiiP~l~G~i~d~~g~~~~~~~~pllc~ly 401 (422)
T COG0738 325 VVALY-ALFLIGLFNSIMFPTIFSLALKNLGEH-TS-VGSGLLVMAIVGGAIIPPLQGVIADMFGIQLTFLIVPLLCYLY 401 (422)
T ss_pred hHHHH-HHHHHHHHhHHHHHHHHHHHHhccCcc-cc-ccceeeeeheecchHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 11111 122233445556788888888888833 22 2333444566788899999999999988776655444444443
|
|
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.77 E-value=5.7e-16 Score=152.12 Aligned_cols=116 Identities=22% Similarity=0.411 Sum_probs=96.1
Q ss_pred Hhhhhhhhcc-cchhHHHHHHHHHHHHHHHHHHhcC-ChhHHHHHHHHHHhhhhhhhhhHHHHHhhcCCCCC--ccchhc
Q 014616 10 AASGGWINDA-YGRKKATLLADVVFTAGAIIMAAAP-DPYVLILGRLLVGLGVGIASVTAPVYIAEASPSEV--RGGLVS 85 (421)
Q Consensus 10 ~~~~g~l~dr-~Grr~~~~~~~~l~~i~~~~~~~~~-s~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~--rg~~~~ 85 (421)
.+++|+++|| +|||+++.++.++++++..++++++ +...+.+.|+++|+|.|...+...+++.|++|+++ |++..+
T Consensus 74 ~~~~G~LaDr~~G~r~~~~~g~~~~~ig~~l~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~ 153 (500)
T PRK09584 74 VAIGGWLGDKVLGTKRVIMLGAIVLAIGYALVAWSGHDAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPRLDGAFT 153 (500)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchhhhhcch
Confidence 4689999999 5999999999999999999998875 45667789999999999999999999999998654 445667
Q ss_pred hHHHHHHHHHHHHHHHhhhcccCCccchHHHHhhHHHHHHH
Q 014616 86 TNVLMITSGQFLSYLVNLAFTEVPGTWRWMLGVSAVPAIIQ 126 (421)
Q Consensus 86 ~~~~~~~~g~~l~~~~~~~~~~~~~~Wr~~f~~~~~~~l~~ 126 (421)
......++|..+++.++..+.+.. +||+.|++.++..++.
T Consensus 154 ~~~~~~~iG~~~gp~i~g~l~~~~-g~~~~F~i~~i~~~i~ 193 (500)
T PRK09584 154 MYYMSINIGSFFSMLATPWLAAKY-GWSVAFALSVVGMLIT 193 (500)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHH
Confidence 777888899999988888776655 5999999877544443
|
|
| >KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.77 E-value=3.5e-18 Score=153.59 Aligned_cols=327 Identities=16% Similarity=0.131 Sum_probs=208.1
Q ss_pred hhHHHHhhhhhhhcccchhHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHhhhhhhhhhHHHHHhhcCCCCC-ccch
Q 014616 5 GAIVGAASGGWINDAYGRKKATLLADVVFTAGAIIMAAAPDPYVLILGRLLVGLGVGIASVTAPVYIAEASPSEV-RGGL 83 (421)
Q Consensus 5 g~~~g~~~~g~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~s~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~-rg~~ 83 (421)
-.++.+++.|.+.||+|+|..+++++.++...+++.++..+++++++.|.+||+|.+....+..++++|.+|+++ |+.+
T Consensus 118 ~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg~sy~~l~vAR~LQgvgsA~~~tsglamlAd~f~~d~er~~v 197 (464)
T KOG3764|consen 118 VQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFGNSYPMLFVARSLQGVGSAFADTSGLAMLADVFPEDNERGSV 197 (464)
T ss_pred HHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHhhhhHHHHHhhhHHHHHHHcccchhhhHH
Confidence 356677899999999999999999999999999999999999999999999999999999999999999999865 7999
Q ss_pred hchHHHHHHHHHHHHHHHhhhcccCCccchHHHHhhHHHHHHHHHHhhcCCcChHHHHhcCCHHHHHHHHHHhcChhhhH
Q 014616 84 VSTNVLMITSGQFLSYLVNLAFTEVPGTWRWMLGVSAVPAIIQFVLMLFMPESPRWLFMKSDKEKAILVLSKIYDIARLE 163 (421)
Q Consensus 84 ~~~~~~~~~~g~~l~~~~~~~~~~~~~~Wr~~f~~~~~~~l~~~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (421)
++..-.+...|.++|++.++++-+.. |-+.+|++.++..++-..+.+++-|..+ .+
T Consensus 198 mGialgfislG~lvgPpfGGilYe~~-Gk~aPFlVL~~v~Lld~~L~l~vi~p~~-----~~------------------ 253 (464)
T KOG3764|consen 198 MGIALGFISLGVLVGPPFGGILYEFA-GKSAPFLVLAIVLLLDGALQLLVIEPTE-----MD------------------ 253 (464)
T ss_pred HHHHHHHHhccceecCCcccchHhhc-CCcCcHHHHHHHHHHHHHHHHheeCccc-----cC------------------
Confidence 99999999999999999988776655 4899999999888887766655433211 00
Q ss_pred HHHHHHHHHHHHHHhhcccccHHHhhcchhHHHHHHHHHHHHHHHhhcCcceehhchH---HHH-HHcCCCChHHHHHHH
Q 014616 164 DEIDHLSAAAEEELRKKKTVRYLDVFKSKEIRLAFLAGAGLQAFQQFTGINTVMYYSP---TIV-QMAGFQSNQLALLLS 239 (421)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~g~~~~~~~~~~~ 239 (421)
+....+...+.+++++|..+..... + .+ ......+.-| .+. +...-...+.+ +..
T Consensus 254 ------------~~~~~~~~~~~~Ll~dP~I~~~aga---i-~~----~n~~lafLePtlslwm~e~m~~p~w~~G-~~f 312 (464)
T KOG3764|consen 254 ------------PDSTEQGTPMWSLLMDPYILLIAGA---I-TF----SNSSLAFLEPTLSLWMLETMFTPGWEVG-LAF 312 (464)
T ss_pred ------------ccccccCccHHHHHhCchHhhhhcc---h-hh----ccchHHHhCcccHHHHHHhccCCCccee-eee
Confidence 0011223346677888766543211 1 11 1111222222 333 33332222433 344
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCChhHHHHhhHHHHHHHHHHHHHHhhCCCCCCCcchhHHHHHHHHHHHHHhhccccccc
Q 014616 240 LAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLALYIAFFAPGMGPVP 319 (421)
Q Consensus 240 ~~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 319 (421)
++..+...+++.+.|.+.||+++.+.+........++..+....+ ++ . ....|+-..+..+.+...-....|..
T Consensus 313 Lp~~~~y~ig~~lfg~la~k~~~~~wl~~~~gl~~~G~~~~~iP~-~~---~--~~~L~vp~~~l~~~i~~~dasl~P~l 386 (464)
T KOG3764|consen 313 LPASLSYAIGTNLFGKLADKYPHLRWLLSLGGLATVGVSSGPIPF-AT---S--IAQLWVPNFGLGFGIGLADASLIPTL 386 (464)
T ss_pred cccccchhccCchHHHHHHhcCchhHHHHHHHHHHHHHHhchhHh-hh---h--HHHHhhhhHHHHHHHHHHHHHHhhhh
Confidence 555566889999999999999954443322222222211111111 10 0 00112222222222222111222222
Q ss_pred ceeccccCccc---hhhhhhHHHHHHHHHHHHHHHHHhHHHHHHcCcchhhHHHHHHHHHHHHHHHh
Q 014616 320 WTLNSEVYPEQ---YRGICGGMSATVNWISNLIVAQTFLTVAELVGTGATFLILAGIAVLAVVFVIL 383 (421)
Q Consensus 320 ~~~~~e~~p~~---~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 383 (421)
. +..+.-+.+ .-|...++......++.+++|...+.+.+..|+.|...+.+...++-.-++.+
T Consensus 387 ~-~lvd~rh~s~~~vYGsVyaIad~a~sla~a~GP~~gg~iv~~iGF~wl~~iig~~n~iyapvl~l 452 (464)
T KOG3764|consen 387 G-YLVDPRHVSGFNVYGSVYAIADAAFSLAYAIGPTFGGSLVEAIGFEWLMTIIGILNLIYAPVLLL 452 (464)
T ss_pred H-HhcchhhccccceeeeHHHHHHHHHHHhhhccccccchheeehhHHHHHHHHHHHHHHHHHHHHH
Confidence 1 112222223 45666777777777888888888888888888888888888887765544433
|
|
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=5.1e-16 Score=152.10 Aligned_cols=129 Identities=19% Similarity=0.156 Sum_probs=103.2
Q ss_pred HHHhhhhhhhcccchhHHHHHHHHHHHHHHHHHHhc------CChhHHHHHHHHHHhhhhhhhhhHHHHHhhcCCCCCcc
Q 014616 8 VGAASGGWINDAYGRKKATLLADVVFTAGAIIMAAA------PDPYVLILGRLLVGLGVGIASVTAPVYIAEASPSEVRG 81 (421)
Q Consensus 8 ~g~~~~g~l~dr~Grr~~~~~~~~l~~i~~~~~~~~------~s~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg 81 (421)
..+++.|+++||+|||+++.++.+++++++++++++ ++++.+.+.|+++|+|.+...+.....+.+|+| ++||
T Consensus 76 ~~~lp~G~L~Dr~G~R~vllig~ll~~iG~ll~ala~~~~i~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~RG 154 (591)
T PTZ00207 76 YFLLPYSFIYDYLGPRPIFVLSMTVFCLGTLLFALTFQEVIEGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFP-SNRG 154 (591)
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-hhhH
Confidence 345678999999999999999999999999999987 689999999999999999999999999999997 6789
Q ss_pred chhchHHHHHHHHHHH-HHHHhhhcccCCccchHHHHhhHHHHHHHHHH-hhcC--CcChHHH
Q 014616 82 GLVSTNVLMITSGQFL-SYLVNLAFTEVPGTWRWMLGVSAVPAIIQFVL-MLFM--PESPRWL 140 (421)
Q Consensus 82 ~~~~~~~~~~~~g~~l-~~~~~~~~~~~~~~Wr~~f~~~~~~~l~~~~~-~~~~--~esp~~~ 140 (421)
.+.+.......+|..+ +++....+. ++|++.|++.++..++..+. ..++ |++|++.
T Consensus 155 ~a~Gi~~~~~gLGsaI~~~l~~~l~~---~~~~~~fl~l~vl~~vv~ll~~~~vr~p~~~~~~ 214 (591)
T PTZ00207 155 AVVAIMKTFTGLGSAILGSIQLAFFS---DNTSAYFFFLMSFALVVGILAIVFMRLPPFHLTG 214 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HhHHHHHHHHHHHHHHHHHHHHhheeCCcchhhc
Confidence 9999998888888865 444443332 25888888877666654433 3333 5555554
|
|
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=99.75 E-value=9.7e-16 Score=147.11 Aligned_cols=359 Identities=13% Similarity=0.112 Sum_probs=196.8
Q ss_pred hhhHHHHhhhhhhhc----ccchhHHHHHH-HHHHHHHHHHHHhcCChhHHH------------HHHHHHH-----hhhh
Q 014616 4 VGAIVGAASGGWIND----AYGRKKATLLA-DVVFTAGAIIMAAAPDPYVLI------------LGRLLVG-----LGVG 61 (421)
Q Consensus 4 ig~~~g~~~~g~l~d----r~Grr~~~~~~-~~l~~i~~~~~~~~~s~~~l~------------~~R~l~G-----~g~g 61 (421)
+..++.+++.|+++| |+|||+.++.. .+...++..+.+++++...++ ..+.+.| ++..
T Consensus 50 l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~~l~ll~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~lld~~~n 129 (477)
T TIGR01301 50 LSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAFAVILIGFAADIGHLFGDNLDKKTKPRAIIVFVVGFWILDVANN 129 (477)
T ss_pred HHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHHHHHHHHHhCchhhhhccccccccchhHHHHHHHHHHHHHHHHHH
Confidence 456778899999999 59999998875 555555556667776643221 1333433 4677
Q ss_pred hhhhhHHHHHhhcCCCCCc--cchhchHHHHHHHHHHHHHHHhhhcc--c------------CCccchHHHHhhHHHHHH
Q 014616 62 IASVTAPVYIAEASPSEVR--GGLVSTNVLMITSGQFLSYLVNLAFT--E------------VPGTWRWMLGVSAVPAII 125 (421)
Q Consensus 62 ~~~~~~~~~i~e~~p~~~r--g~~~~~~~~~~~~g~~l~~~~~~~~~--~------------~~~~Wr~~f~~~~~~~l~ 125 (421)
...+...++++|..|+++| +.+.+........|.++++.++.... . ...+-|+.|++.++..++
T Consensus 130 ~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i 209 (477)
T TIGR01301 130 MLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGAYSGLYKIFPFTKTEACGVSCANLKSCFLIDIILLAI 209 (477)
T ss_pred HHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccccccccccccchHHHHHHHHHHHHHH
Confidence 7777889999999998865 46777777788888888887775431 0 011468899998877776
Q ss_pred HHHH-hhcCCcChHHHHhcCCHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHhhccccc-HHHhhcch-hHHHHHHHHH
Q 014616 126 QFVL-MLFMPESPRWLFMKSDKEKAILVLSKIYDIARLEDEIDHLSAAAEEELRKKKTVR-YLDVFKSK-EIRLAFLAGA 202 (421)
Q Consensus 126 ~~~~-~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~ 202 (421)
..++ .+..+|.|... +++.++.+ . ++ .++.+. .+.-.. ++++.+-| ..+...+.
T Consensus 210 ~~l~t~~~v~E~~~~~--~~~~~~~~-----~---~~----------~~~~~~-~~~~~~i~~~~~~mP~~m~~l~~v-- 266 (477)
T TIGR01301 210 LTYIALSAVKENPLIG--SDDFINSE-----A---AP----------PSKHGE-EAFFGELFGAFKYLPRPVWILLLV-- 266 (477)
T ss_pred HHHHHeeeeeccCCCc--cccchhhh-----c---cc----------ccccch-hhhHHHHHHHHHHCCHHHHHHHHH--
Confidence 6555 45678876311 11100000 0 00 000000 000000 11111112 22322222
Q ss_pred HHHHHHhhcCcceehhchHHHH-H-HcCCCCh-----HH----HHHHHHHHHHHHHHHHHHHHHHHhhcCC-hhHHHHhh
Q 014616 203 GLQAFQQFTGINTVMYYSPTIV-Q-MAGFQSN-----QL----ALLLSLAVAGTNAVGTIVGIYLIDHFGR-KKLALSSL 270 (421)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~-~-~~g~~~~-----~~----~~~~~~~~~~~~~~g~~~~g~l~dr~gr-r~~~~~~~ 270 (421)
.+..+.++....+|.+.+. + .++.++. +. +.+..........+.+++-.++.+|+|+ |+....+.
T Consensus 267 ---qffsW~a~f~~~~y~T~~vg~~v~~~~~~~~~~y~~gvr~G~~~l~~~s~~~~i~s~~l~~l~~~~g~~k~~~~~s~ 343 (477)
T TIGR01301 267 ---TCLNWIAWFPFILFDTDWMGREVYGGSVNQGAKYDDGVRAGAFGLMLNSVVLGITSIGMEKLCRGWGAGKRLWGIVN 343 (477)
T ss_pred ---HHHHHHHHHHHHHhccHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHH
Confidence 1222223333333444443 2 2333221 11 2333333444445566667788899985 55545554
Q ss_pred HHHHHHHHHHHHHHhh-C---C-----CCCCC--cchhHHHHHHHHHHHHHhhcccccccceeccccCccc--hhhhhhH
Q 014616 271 AGVIISLVLLSWAFIS-G---S-----SASSS--GVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQ--YRGICGG 337 (421)
Q Consensus 271 ~~~~~~~~~l~~~~~~-~---~-----~~~~~--~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~p~~--~r~~~~g 337 (421)
....+++....+.-.. . . ....+ ... +..+.. .....+.-.....+++++.++..|++ ..|...|
T Consensus 344 ~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~-~~~~Gi~~A~~~siPfal~s~~~~~~~~~~G~~mg 421 (477)
T TIGR01301 344 IILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIK-ASALIV-FAILGIPLAITYSIPFALASIRSSNLGAGQGLSMG 421 (477)
T ss_pred HHHHHHHHHHHHHHhhhhccccccccccccCcchhhH-HHHHHH-HHHhhHHHHHHHHHhHHHHHHHccccCCCCcchhh
Confidence 4444444444322110 0 0 00000 001 111111 11111222233567788889888854 4488999
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHcCc--chhhHHHHHHHHHHHHHHHhhccCCCC
Q 014616 338 MSATVNWISNLIVAQTFLTVAELVGT--GATFLILAGIAVLAVVFVILFVPETQG 390 (421)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~g~--~~~~~~~~~~~~~~~~~~~~~~~et~~ 390 (421)
+.|+.-.+.+.+.+...+.+.+..|. ...+.+-++.++++++..++.+|+++.
T Consensus 422 ilN~~I~lpQii~sl~~g~~~~~~g~~~~~~~~~~gv~~~~aa~~~~~~~~~~~~ 476 (477)
T TIGR01301 422 VLNLAIVIPQIIVSLGSGPWDQLFGGGNLPAFVVGAVAAFVSGLLALILLPRPRV 476 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCeeHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 99999999999888877777777763 345566666677778888888898864
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=99.73 E-value=9.9e-15 Score=141.04 Aligned_cols=351 Identities=21% Similarity=0.259 Sum_probs=206.4
Q ss_pred hHHHHhhhhhhhcccchhHHHHH-HHHHHHHHHHHHHhc-C-ChhHHHHHHHHHHhhhhhhhhhHHHHHhhcCCCCCc--
Q 014616 6 AIVGAASGGWINDAYGRKKATLL-ADVVFTAGAIIMAAA-P-DPYVLILGRLLVGLGVGIASVTAPVYIAEASPSEVR-- 80 (421)
Q Consensus 6 ~~~g~~~~g~l~dr~Grr~~~~~-~~~l~~i~~~~~~~~-~-s~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~r-- 80 (421)
..+-.++.|-++|+-|+||.++. ..++..+.+.+..+. + +++...+.-++.-++.+.......+++.|..+++++
T Consensus 83 ~all~P~lGa~aD~~~~Rk~~l~~~~~~~~~~~~~l~~v~~~~~~~~~~l~iia~v~~~~~~vfyna~LP~la~~~~~~~ 162 (477)
T PF11700_consen 83 QALLAPFLGAIADYGGRRKRFLLIFTLLGVLATALLWFVSPGQWWLALVLFIIANVGYEASNVFYNAYLPDLARPEPRVR 162 (477)
T ss_pred HHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCChhhh
Confidence 45566788999999998875544 445555566666663 3 344444555555578888889999999999999988
Q ss_pred ------------------------cchhchHHHHHHHHHHHHHHHhhhcccCCcc-------chHHHHhhHHHHHHH-HH
Q 014616 81 ------------------------GGLVSTNVLMITSGQFLSYLVNLAFTEVPGT-------WRWMLGVSAVPAIIQ-FV 128 (421)
Q Consensus 81 ------------------------g~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~-------Wr~~f~~~~~~~l~~-~~ 128 (421)
++.++.......+|.++..++...+....++ -|..+.+.++--++. +.
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l~~~~~~~~~~~~~~~~r~~~~~~a~ww~vfsiP 242 (477)
T PF11700_consen 163 AAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLISLLLVISPGSTASNTWAIRVAFLIVALWWLVFSIP 242 (477)
T ss_pred hhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccchhhhHHHHHHHHHHHHHHHH
Confidence 8888887777778887776665544222211 377777766544443 33
Q ss_pred HhhcCCcChHHHHhcCCHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHhhcccccHHHhhcchhHHHHHHHHHHHHHHH
Q 014616 129 LMLFMPESPRWLFMKSDKEKAILVLSKIYDIARLEDEIDHLSAAAEEELRKKKTVRYLDVFKSKEIRLAFLAGAGLQAFQ 208 (421)
Q Consensus 129 ~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (421)
..+++||.|+....++..... . ... ++-....+++.|.|+....++..+.
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~-------------~---~g~---------~~l~~t~k~~~~~~~~~~fLia~~l----- 292 (477)
T PF11700_consen 243 LFLWLPDRPGPRPLPSGSSYL-------------R---FGF---------KRLWRTFKEIRKLRQLFLFLIAYFL----- 292 (477)
T ss_pred HHHhCCCCCCCCCCCcchhHH-------------H---HHH---------HHHHHHHHHHHhChHHHHHHHHHHH-----
Confidence 345667766421111000000 0 000 0001122333444544433332211
Q ss_pred hhcCcceehhchHHHH-HHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCh--hHHHHhhHHHHHHHHHHHHHHh
Q 014616 209 QFTGINTVMYYSPTIV-QMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRK--KLALSSLAGVIISLVLLSWAFI 285 (421)
Q Consensus 209 ~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~grr--~~~~~~~~~~~~~~~~l~~~~~ 285 (421)
..-++..+......+. ++.|++..+..... +......++|+++.|++.||+|.| +++........+..+....++.
T Consensus 293 ~~dg~~ti~~~~~i~a~~~lg~s~~~l~~~~-l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~~~i~~~g~~G~~ 371 (477)
T PF11700_consen 293 YSDGVNTIISFAGIYATEVLGMSTTQLIVFG-LVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILWIIIPLYGLFGFW 371 (477)
T ss_pred HHHHHHHHHHHHHHHHHHhcCcCHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHhh
Confidence 1122333333344444 46899887765444 444556899999999999999998 6665544433222221111111
Q ss_pred hCCCCCCCcchhHHHHHHHHHHHHHhhcccccccceeccccCccchhhhhhHHHHHHHHHHHHHHHHHhHHHHHHcCcc-
Q 014616 286 SGSSASSSGVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELVGTG- 364 (421)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~- 364 (421)
.......+. +... .+......+..+.++.+-++.+|+.|+++.+...|+.+..+..+++++|.+++.+.+..|..
T Consensus 372 ~~~~g~~~~---~~f~-~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg~~r 447 (477)
T PF11700_consen 372 PSFFGLKSP---WEFW-VLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDATGSQR 447 (477)
T ss_pred hcccCcccH---HHHH-HHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCch
Confidence 111111111 1111 12222333444556777788999999999999999999999999999999999999998844
Q ss_pred hhhHHHHHHHHHHHHHHHhhccCCCCCC
Q 014616 365 ATFLILAGIAVLAVVFVILFVPETQGLT 392 (421)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~et~~~~ 392 (421)
..+.....+.++..++. .+.++.|++.
T Consensus 448 ~g~~~l~~lf~~gl~ll-~~v~~~~g~~ 474 (477)
T PF11700_consen 448 YGFLFLLVLFLIGLILL-FFVDVEKGRE 474 (477)
T ss_pred hHHHHHHHHHHHHHHHH-hhccchhhhh
Confidence 55555555555554444 5556655554
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.6e-15 Score=134.15 Aligned_cols=320 Identities=21% Similarity=0.255 Sum_probs=216.2
Q ss_pred hhhhHHHHhhhhhhhcccchhHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHhhhhhhhhhHHHHHhhcCCCCCccc
Q 014616 3 LVGAIVGAASGGWINDAYGRKKATLLADVVFTAGAIIMAAAPDPYVLILGRLLVGLGVGIASVTAPVYIAEASPSEVRGG 82 (421)
Q Consensus 3 ~ig~~~g~~~~g~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~s~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg~ 82 (421)
++...+.+++..+++.|+|.++.+.+++++.++++++=... +...++.+-.+.|.|.+...+..+..+.+.+|+| -+.
T Consensus 57 ll~fg~~ap~a~~Lar~~g~er~l~~~Llli~~G~~iR~~~-~~~~L~~gt~l~G~gIav~nVLLPslIK~~Fpk~-~~~ 134 (395)
T COG2807 57 LLAFGLFAPAAPRLARRFGEERSLFLALLLIAAGILIRSLG-GLPLLFLGTLLAGAGIAVINVLLPSLIKRDFPKR-VGL 134 (395)
T ss_pred HHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHhhHHHHHHhhhHHHHhhcccc-hhh
Confidence 45667788899999999999999999999999999998877 7788899999999999999999999999999766 577
Q ss_pred hhchHHHHHHHHHHHHHHHhhhcccCCccchHHHHhhHHHHHHHHHHhhcCCcChHHHHhcCCHHHHHHHHHHhcChhhh
Q 014616 83 LVSTNVLMITSGQFLSYLVNLAFTEVPGTWRWMLGVSAVPAIIQFVLMLFMPESPRWLFMKSDKEKAILVLSKIYDIARL 162 (421)
Q Consensus 83 ~~~~~~~~~~~g~~l~~~~~~~~~~~~~~Wr~~f~~~~~~~l~~~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (421)
.++.+......|..+++.+...+..+.++||....+-+.++++.++.|+.-. .| ++.
T Consensus 135 mtglYs~sl~~~aaLaa~lavpla~~~~gW~~aL~~WAl~allAl~~WlPq~--~r-----~~~---------------- 191 (395)
T COG2807 135 MTGLYSTSLGAGAALAAALAVPLAQHSGGWRGALGFWALLALLALLIWLPQA--LR-----EQA---------------- 191 (395)
T ss_pred HHhHHHHHHHHHHHHHhhhhhHHHHhhccHHHHHHHHHHHHHHHHHHHhhhc--cc-----ccc----------------
Confidence 8888888888888888777766666666799999999999998888764211 11 000
Q ss_pred HHHHHHHHHHHHHHHhhcccccHHHhhcchhHHHHHHHHHHHHHHHhhcCcceehhchHHHHHHcCCCChHHHHHHHHHH
Q 014616 163 EDEIDHLSAAAEEELRKKKTVRYLDVFKSKEIRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQMAGFQSNQLALLLSLAV 242 (421)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 242 (421)
...+.+..+...++|+|.-|...+. +-.+...++...-+.|.++.+.|.+..+.+.+.++..
T Consensus 192 -------------~~~~~~~~~~~~vw~~~~aW~vtLf-----mGlqS~~~Y~~~~WLP~ili~~G~sa~~aG~llsl~~ 253 (395)
T COG2807 192 -------------ASIATKLVSVRKVWRSPLAWQVTLF-----MGLQSLLYYIVIGWLPAILIDRGLSAAEAGSLLSLMQ 253 (395)
T ss_pred -------------cccccccccccccccCchhHHHHHH-----HHhhHHHHHHHHHHHHHHHHHcCCCHHHhhhHHHHHH
Confidence 0011122233457888876653321 1122233455556789999999999988887777665
Q ss_pred HHHHHHHHHHHHHHHhhc-CChhHHHHhhHHHHHHHHHHHHHHhhCCCCCCCcchhHHHHHHHHHHHHHhhcccccccce
Q 014616 243 AGTNAVGTIVGIYLIDHF-GRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLALYIAFFAPGMGPVPWT 321 (421)
Q Consensus 243 ~~~~~~g~~~~g~l~dr~-grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 321 (421)
. ..++.++...++.+|. ++|...+....+..++.+.+.+. +. .....|..+.++. ..+..++..+
T Consensus 254 l-~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~G~~G~~~~----P~---~~~~lw~~llG~G------~G~~F~laL~ 319 (395)
T COG2807 254 L-AQLPTALLIPLLARRSKNQRPLVVLALLLMLVGLVGLLLA----PG---QLPILWALLLGLG------QGGAFPLALT 319 (395)
T ss_pred H-HHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHh----hh---hHHHHHHHHHhCc------cchHHHHHHH
Confidence 4 4788899999999975 55655555555555555544332 10 1112222222221 1122233334
Q ss_pred eccccCc-cchhhhhhHHHHHHHHHHHHHHHHHhHHHHHHcCcc-hhhHHHHHHHHHHHH
Q 014616 322 LNSEVYP-EQYRGICGGMSATVNWISNLIVAQTFLTVAELVGTG-ATFLILAGIAVLAVV 379 (421)
Q Consensus 322 ~~~e~~p-~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~ 379 (421)
......+ ++.-+.-.|+.+.++++-..++|..++.+-|..|.. .....+....+...+
T Consensus 320 li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~lhDa~gsw~~~~~~l~~~~i~m~i 379 (395)
T COG2807 320 LILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGFLHDATGSWSAPLVLLALATLLMLI 379 (395)
T ss_pred HHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhHHHHhcCChHHHHHHHHHHHHHHHH
Confidence 4443333 333455678888889998999999999999998753 333334443333333
|
|
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=4.5e-15 Score=144.29 Aligned_cols=309 Identities=15% Similarity=0.152 Sum_probs=168.1
Q ss_pred hhHHHHhhhhhhhcc----cchhH-HHHHHHHHHHHHHHHHHhcCC------hhHHHHHHHHHHhhhhhhhhhHHHHHhh
Q 014616 5 GAIVGAASGGWINDA----YGRKK-ATLLADVVFTAGAIIMAAAPD------PYVLILGRLLVGLGVGIASVTAPVYIAE 73 (421)
Q Consensus 5 g~~~g~~~~g~l~dr----~Grr~-~~~~~~~l~~i~~~~~~~~~s------~~~l~~~R~l~G~g~g~~~~~~~~~i~e 73 (421)
--.+..++.|+++|| +|||| .+.++.+..++...+....++ ...+.+..++.+.+.........++.+|
T Consensus 57 ~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l~f~~p~~~~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~ 136 (444)
T PRK09669 57 LDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLLTFYTPDFGATGKIIYACVTYILLSLVYTAINVPYCAMPGA 136 (444)
T ss_pred HHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHHHHHHhhcchHHHhHHH
Confidence 345677899999998 78854 555677777777766665554 2344556666776666777777889999
Q ss_pred cC-CCCCccchhchHHHHHHHHHHHHHHHhhh----cc--cCCccchHHHHhhHHHHHHHHHH-hhcCCcChHHHHhcCC
Q 014616 74 AS-PSEVRGGLVSTNVLMITSGQFLSYLVNLA----FT--EVPGTWRWMLGVSAVPAIIQFVL-MLFMPESPRWLFMKSD 145 (421)
Q Consensus 74 ~~-p~~~rg~~~~~~~~~~~~g~~l~~~~~~~----~~--~~~~~Wr~~f~~~~~~~l~~~~~-~~~~~esp~~~~~~~~ 145 (421)
+. ++++|++..+........|..+++.+... .. ....+|+..+.+.++.+++..+. .+..+|.++. ++
T Consensus 137 ~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~~pl~~~~~~~~~~~g~~~~~~i~~ii~~v~~~~~~~~~~e~~~~----~~ 212 (444)
T PRK09669 137 ITNDPRERHSLQSWRFALSFIGGLIVSVIALPLVDILGKGDEQKGYFYAMMVMGLLGVVLFFCCFFMTKERYTP----EV 212 (444)
T ss_pred hcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHhCCeEEecCC----CC
Confidence 88 55789877666666666655555432221 11 11235888888777666555443 3334443210 00
Q ss_pred HHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHhhcccccHHHhhcchhHHHHHHHHHHHHHHHhhcCcceehhchHHHHH
Q 014616 146 KEKAILVLSKIYDIARLEDEIDHLSAAAEEELRKKKTVRYLDVFKSKEIRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQ 225 (421)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (421)
+ .+.+.....++.+|||.++................. ....||..+.
T Consensus 213 -~-----------------------------~~~~~~~~~~~~~~n~~~~~l~~~~~~~~~~~~~~~-~~~~y~~~~~-- 259 (444)
T PRK09669 213 -D-----------------------------NSSSVWKDLKLLLGNSQWRIMFIFNVVLLTAVVTRG-GATLYYVNYV-- 259 (444)
T ss_pred -c-----------------------------CCCCHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHh-hhhheeeeee--
Confidence 0 000001234556788877665443222211111111 1111222111
Q ss_pred HcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHhhHHHHHHHHHHHHHHhhCCCCCCCcchhHHHHHHHH
Q 014616 226 MAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLA 305 (421)
Q Consensus 226 ~~g~~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (421)
.+..+.............+++.+++++++||+|+|+....+.....++...+. + ... . . . +.......
T Consensus 260 ---~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~--~-~~~-~---~-~-~~~~~~~~ 327 (444)
T PRK09669 260 ---LLRPDLATLFLVTGMIAGLFGALLSERLLGKFDRVRAFKWTIVAFVILSALIF--F-IPP-S---N-V-WLIFALNI 327 (444)
T ss_pred ---cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHH--H-hCc-c---h-H-HHHHHHHH
Confidence 11122222222333344677888899999999999887655443332222111 1 111 1 1 1 11111111
Q ss_pred HHHHHhhcccccccceeccccCc-------cchhhhhhHHHHHHHHHHHHHHHHHhHHHHHHcCc
Q 014616 306 LYIAFFAPGMGPVPWTLNSEVYP-------EQYRGICGGMSATVNWISNLIVAQTFLTVAELVGT 363 (421)
Q Consensus 306 ~~~~~~~~g~~~~~~~~~~e~~p-------~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~ 363 (421)
+ ..+......+..+++.+|..+ .+..|...+..+....++..+++.+.+.+.+..|+
T Consensus 328 i-~g~~~~~~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~~~Gy 391 (444)
T PRK09669 328 L-FNFIQNLTTPLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILAWVDY 391 (444)
T ss_pred H-HHHHHHHHHHHHHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 1 112222334666777777765 23345667888888899999999888888877765
|
|
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=7.4e-15 Score=143.78 Aligned_cols=315 Identities=12% Similarity=0.049 Sum_probs=165.5
Q ss_pred HHHHhhhhhhhc----ccchh-HHHHHHHHHHHHHHHHHHhcCC------hhHHHHHHHHHHhhhhhhhhhHHHHHhhcC
Q 014616 7 IVGAASGGWIND----AYGRK-KATLLADVVFTAGAIIMAAAPD------PYVLILGRLLVGLGVGIASVTAPVYIAEAS 75 (421)
Q Consensus 7 ~~g~~~~g~l~d----r~Grr-~~~~~~~~l~~i~~~~~~~~~s------~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~ 75 (421)
++..++.|.++| |+||| +.++++.+..+++..+....++ +..+++.-++.+++.........++..|..
T Consensus 56 ai~dp~~G~lsD~t~sr~Grrrp~il~g~i~~~i~~~llf~~p~~~~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~lt 135 (473)
T PRK10429 56 AINDPIMGWIVNNTRSRWGKFKPWILIGTLANSVVLFLLFSAHLFEGTAQYVFVCVTYILWGMTYTIMDIPFWSLVPTLT 135 (473)
T ss_pred HHhhchheeehhcCCCCCCCcchhHhhhhHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHHHHHHHHHcchHHhhhHHhC
Confidence 456678999999 66994 5566677777777666644332 223445566777888888888889999998
Q ss_pred -CCCCccchhchHHHHHHHHHHHHHHHhhh----cc--cCCccchHHHHhhHHHHHHHHHH-hhcCCcChHHHHhcCCHH
Q 014616 76 -PSEVRGGLVSTNVLMITSGQFLSYLVNLA----FT--EVPGTWRWMLGVSAVPAIIQFVL-MLFMPESPRWLFMKSDKE 147 (421)
Q Consensus 76 -p~~~rg~~~~~~~~~~~~g~~l~~~~~~~----~~--~~~~~Wr~~f~~~~~~~l~~~~~-~~~~~esp~~~~~~~~~~ 147 (421)
++++|.+..+.-..+..+|..+...+... .. ....+|++...+.++..++..+. .+..+|.+.. ++.+
T Consensus 136 ~~~~eR~~l~~~~~~~~~ig~~~~~~~~~~~~~~~g~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~e~~~~----~~~~ 211 (473)
T PRK10429 136 LDKREREQLVPYPRFFASLAGFVTAGFTLPFVNYVGGGDRGFGFQMFTLVLIAFFIVSTIITLRNVHEVYSS----DNQV 211 (473)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHHcCceecCCc----cccc
Confidence 58899987776555555544333322211 11 11124777776666655544433 3345664310 0000
Q ss_pred HHHHHHHHhcChhhhHHHHHHHHHHHHHHHhhcccccHHHhhcchhHHHHHHHHHHHHHHHhhcCcceehhchHHHHHHc
Q 014616 148 KAILVLSKIYDIARLEDEIDHLSAAAEEELRKKKTVRYLDVFKSKEIRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQMA 227 (421)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (421)
. +++.+.+....++.+++||.++..+.............. .+.+++.+..
T Consensus 212 ~-------------------------~~~~~~~~~~~~~~~~~n~~~~~ll~~~~~~~~~~~~~~-----~~~~y~~~y~ 261 (473)
T PRK10429 212 S-------------------------AEGSHLTLKDIVALIYKNDQLSCLLGMALAYNIASNIIN-----GFAIYYFTYV 261 (473)
T ss_pred c-------------------------ccccCCCHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHh-----hheeeEEEEE
Confidence 0 000000001123345677776654443332222111111 1112222222
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHhhHHHHHHHHHHHHHHhhCCCCCCCcchhHHHHHHHHHH
Q 014616 228 GFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLALY 307 (421)
Q Consensus 228 g~~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (421)
..+....+... .......+++.++.++++||+|+|+....+....+++.+.+........ . .. +.......+.
T Consensus 262 ~~~~~~~~~~~-~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~-~----~~-~~~~i~~~l~ 334 (473)
T PRK10429 262 IGDADLFPYYL-SYAGAANLVTLILFPRLVKSLSRRILWAGASIFPVLSCGVLLLMGLAAP-H----NA-LLIVIAGILL 334 (473)
T ss_pred CCCHHHHHHHH-HHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCc-h----hH-HHHHHHHHHH
Confidence 22333333332 3333446788888999999999999877655544433333221111111 1 11 1111111111
Q ss_pred HHHhhcccccccceeccccCc-----c--chhhhhhHHHHHHHHHHHHHHHHHhHHHHHHcCc
Q 014616 308 IAFFAPGMGPVPWTLNSEVYP-----E--QYRGICGGMSATVNWISNLIVAQTFLTVAELVGT 363 (421)
Q Consensus 308 ~~~~~~g~~~~~~~~~~e~~p-----~--~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~ 363 (421)
........+..+++.+|..+ + +..|...+.......++..+++.+.+.+.+..|+
T Consensus 335 -g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~l~~~Gy 396 (473)
T PRK10429 335 -NIGTALFWVLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVVLGLIGY 396 (473)
T ss_pred -HHHHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 11112223445566777744 2 3345577888888889988988888888776664
|
|
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=99.69 E-value=5.3e-15 Score=144.08 Aligned_cols=329 Identities=11% Similarity=-0.003 Sum_probs=183.1
Q ss_pred hhHHHHhhhhhhhcccc-----hhHHHHHHHHHHH-HHHHHHHhcCChhHH-HHHHHHHHhhhhhhhhhHHHHHhhcCCC
Q 014616 5 GAIVGAASGGWINDAYG-----RKKATLLADVVFT-AGAIIMAAAPDPYVL-ILGRLLVGLGVGIASVTAPVYIAEASPS 77 (421)
Q Consensus 5 g~~~g~~~~g~l~dr~G-----rr~~~~~~~~l~~-i~~~~~~~~~s~~~l-~~~R~l~G~g~g~~~~~~~~~i~e~~p~ 77 (421)
...+- +++|.++||++ ||+.+.++.++.. +.....+..++.... .+.+++.+++.+...+++.++..|..+
T Consensus 73 pw~~K-~l~g~l~D~~~i~G~rRr~~l~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~- 150 (468)
T TIGR00788 73 GWALK-PFAGVMSDTFPLFGYTKRWYLVLSGLLGSAILYGLLPGKVSSAKVAAAFIFLAALAKALYDVLVDSLYSERIR- 150 (468)
T ss_pred HHHHH-HHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh-
Confidence 34444 45999999998 7887777776663 333333334554434 448999999999999999999999998
Q ss_pred CCccch---hchHHHHHHHHHHHHHHHhhhcccCCccchHHHHhhHHHHHHHHHHhhcCCcChHHHHhcCCHHHHHHHHH
Q 014616 78 EVRGGL---VSTNVLMITSGQFLSYLVNLAFTEVPGTWRWMLGVSAVPAIIQFVLMLFMPESPRWLFMKSDKEKAILVLS 154 (421)
Q Consensus 78 ~~rg~~---~~~~~~~~~~g~~l~~~~~~~~~~~~~~Wr~~f~~~~~~~l~~~~~~~~~~esp~~~~~~~~~~~~~~~~~ 154 (421)
|++... .+........|.++++.+++.+.+.. +||..|++.+...++..+...+++|++.... ++..++...
T Consensus 151 ~~~~~~~~~~s~~~~~~~~G~~vg~~l~G~l~~~~-~~~~~f~~~a~l~ll~~~~~~~~~E~~~~~~-~~~~~~~~~--- 225 (468)
T TIGR00788 151 ESPSAGPSLVSWMWGASATGGLISSLLGGPLLDKT-LTRILFLITAALLLLQLFVSNLSKERRAFVR-PRIGTYLEM--- 225 (468)
T ss_pred cCCCcCCCeeeHHHHHHHHHHHHHHHHHHHHHHhc-CcchHHHHHHHHHHHHHHHHHhccccccccc-ccccccchh---
Confidence 444322 22222333467777777776655544 4999999988776666555677788642110 000000000
Q ss_pred HhcChhhhHHHHHHHHHHHHHHHhhcccccHHHhhcchhHHHHHHHHHHHHHHHhhcCcceehhchHHHHHHcCCCChHH
Q 014616 155 KIYDIARLEDEIDHLSAAAEEELRKKKTVRYLDVFKSKEIRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQMAGFQSNQL 234 (421)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 234 (421)
... .. .....+...++.....+.+++|.++..+...+.. + ....+.....++ ...+..|.++.+.
T Consensus 226 --------~~~--~~-~~~~~~~~~~~~~~l~~~l~~~~i~~~l~fifl~-~-~~~~~~~~~~f~--~~~~~lG~s~~~~ 290 (468)
T TIGR00788 226 --------NMA--LL-TLGVLANVKVQILGLRGAIQLLEIAKPLIFIFLS-Y-ANLPGASGSVFC--ATTQCLPGGPSFS 290 (468)
T ss_pred --------hhh--hh-hhhHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHH-H-hhcCCCCceeEE--EEcccCCCCcchh
Confidence 000 00 0000000000011233446677766543322210 1 111111111111 1123568888887
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHhhHHHHHHHHHHHHHHhhCC--CCCCCcch--hHHHHHHHHHHHHH
Q 014616 235 ALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGS--SASSSGVY--GWIAVIGLALYIAF 310 (421)
Q Consensus 235 ~~~~~~~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~~~~~--~~~~~~~~~~~~~~ 310 (421)
+....... +..+++..+.++..+|.+.|+++..+.....++............ ........ ....+..+.
T Consensus 291 G~~~~~~~-v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~~~~~l~~~~----- 364 (468)
T TIGR00788 291 GMSKVVGN-LGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEVFVLGDSIIAEVL----- 364 (468)
T ss_pred hhHHHHHH-HHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeeccccccCCCCeeeeeehhHHHHHH-----
Confidence 76665544 557888888889889999888876555544443322111000000 00000101 101111111
Q ss_pred hhcccccccceeccccCccchhhhhhHHHHHHHHHHHHHHHHHhHHHHHHcC
Q 014616 311 FAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELVG 362 (421)
Q Consensus 311 ~~~g~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g 362 (421)
..... .....+.++..|++.+|+..++.++..+++..+++...+.+.++.|
T Consensus 365 ~g~~~-~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~~~g 415 (468)
T TIGR00788 365 AQLKF-MPFLVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLLMETIG 415 (468)
T ss_pred HHHHH-ccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 11111 2225677899999999999999999999999999988888888877
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=99.67 E-value=8e-14 Score=132.22 Aligned_cols=341 Identities=15% Similarity=0.142 Sum_probs=196.3
Q ss_pred hhhhHHHHhhhhhhhcccc-hhHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHhhhhhhhhhHHHHHhhcCCCCCcc
Q 014616 3 LVGAIVGAASGGWINDAYG-RKKATLLADVVFTAGAIIMAAAPDPYVLILGRLLVGLGVGIASVTAPVYIAEASPSEVRG 81 (421)
Q Consensus 3 ~ig~~~g~~~~g~l~dr~G-rr~~~~~~~~l~~i~~~~~~~~~s~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg 81 (421)
.+..++++++.|.++||++ +|+++.+..++.++........++++.++..-++..+...+..|...++.-+...++++
T Consensus 47 ~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~~~~~~~f~~~~~~~~l~~~~~~p~~pl~dsi~~~~~~~~~~- 125 (400)
T PF03825_consen 47 PLARIVSPPFWGAIADRFGSAKRILALLSLLSALALLLLAFSSSFWWLFVIMLLFSFFFSPTMPLSDSIALSYLGDRGK- 125 (400)
T ss_pred HHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHccHHHHHHHHHHHHcccccC-
Confidence 3567888999999999986 56778787777777777778888999888888888888888888888888887764322
Q ss_pred chhchHHHHHHHHHHHHHHH-hhhcccC--CccchHHHHhhHHHHHHHHHHhhcCCcChHHHHhcCCHHHHHHHHHHhcC
Q 014616 82 GLVSTNVLMITSGQFLSYLV-NLAFTEV--PGTWRWMLGVSAVPAIIQFVLMLFMPESPRWLFMKSDKEKAILVLSKIYD 158 (421)
Q Consensus 82 ~~~~~~~~~~~~g~~l~~~~-~~~~~~~--~~~Wr~~f~~~~~~~l~~~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~ 158 (421)
-.+..-...++|..++... ....... .++..+.+++.+..+++.....+.+|+.|+.. .++
T Consensus 126 -~YG~iRlwGSiGf~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ll~~~~l~lp~~~~~~---~~~------------ 189 (400)
T PF03825_consen 126 -DYGRIRLWGSIGFIVAALAFGGLLGGYLGISGTSLIFYIAAILSLLLAGFALFLPKTPPKR---SAK------------ 189 (400)
T ss_pred -CCCcchhhhhHHHHHHHHHHHHHHHhhhccccccHHHHHHHHHHHHHHHHHHhCCCCcccc---ccC------------
Confidence 1222223333444333221 1111111 11233456666555555544556678876210 000
Q ss_pred hhhhHHHHHHHHHHHHHHHhhcccccHHHhhcchhHHHHHHHHHHHHHHHhhcCcceehhchHHHHHHcC-CCChHHHHH
Q 014616 159 IARLEDEIDHLSAAAEEELRKKKTVRYLDVFKSKEIRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQMAG-FQSNQLALL 237 (421)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~ 237 (421)
++.+++...+..+++|+|++...++........ ......|.+.++++.| .+....+..
T Consensus 190 ----------------~~~~~~~~~~~~~llk~~~~~~Fll~~~l~~~~-----~~~~~~f~~~yl~~~gg~~~~~~g~~ 248 (400)
T PF03825_consen 190 ----------------ESVKKLLGLDALKLLKNPRFLVFLLAAFLIGIS-----HAAYYTFFSIYLQELGGYSGSTIGIL 248 (400)
T ss_pred ----------------CCcccccchHHHHHhcCccHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHcccchhhHHHHH
Confidence 000111112234688998876654443322211 1122235566778777 444444443
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCChhHHHHhhHHHHHHHHHHHHHHhhCCCCCCCcchhHHHHHHHHHHHHHhhccccc
Q 014616 238 LSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLALYIAFFAPGMGP 317 (421)
Q Consensus 238 ~~~~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 317 (421)
.. ......++.-...+++.+|+|.|+++..+....++=..++... .+ +.+.......+........+.. ...
T Consensus 249 ~~-l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~a~~--~~---~~~~~~~~~~l~q~lhG~tf~~--~~~ 320 (400)
T PF03825_consen 249 WA-LGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRWLLYAYF--SD---PWPFIVALQLLGQLLHGLTFGL--FHA 320 (400)
T ss_pred HH-HHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHh--cC---CcHHHHHHHHHHHhhhhHHHHH--HHH
Confidence 33 3445688888888999999999988776555443333332221 00 0000000011100011111110 123
Q ss_pred ccceeccccCccchhhhhhHHHHHH-HHHHHHHHHHHhHHHHHHcCcch------hhHHHHHHHHHHHHHHHhhccCCC
Q 014616 318 VPWTLNSEVYPEQYRGICGGMSATV-NWISNLIVAQTFLTVAELVGTGA------TFLILAGIAVLAVVFVILFVPETQ 389 (421)
Q Consensus 318 ~~~~~~~e~~p~~~r~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~g~~~------~~~~~~~~~~~~~~~~~~~~~et~ 389 (421)
....++.+..|++.|+++.++.++. .-+|..++..+.+.+.|..|... .+.+.++..++..++++++.||+.
T Consensus 321 a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~~~~~~~~~~~v~a~~~~~~~~~f~~~fk~~~ 399 (400)
T PF03825_consen 321 ASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFGARGMFDWSAVFLVFAVMALVILVLFVILFKPKH 399 (400)
T ss_pred HHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHhhccCCC
Confidence 3346788999999999999988775 56888899999999998877543 344455555555556666666653
|
|
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.1e-14 Score=139.00 Aligned_cols=307 Identities=17% Similarity=0.283 Sum_probs=186.5
Q ss_pred HHHhhhhhhhc----ccchhHHHH-HHHHHHHHHHHHHHhc-C-C------hhHHHHHHHHHHhhhhhhhhhHHHHHhhc
Q 014616 8 VGAASGGWIND----AYGRKKATL-LADVVFTAGAIIMAAA-P-D------PYVLILGRLLVGLGVGIASVTAPVYIAEA 74 (421)
Q Consensus 8 ~g~~~~g~l~d----r~Grr~~~~-~~~~l~~i~~~~~~~~-~-s------~~~l~~~R~l~G~g~g~~~~~~~~~i~e~ 74 (421)
+-.++.|.++| |+||||.++ ++.+..+++..++... + + ...+.+.-++..++.........++.+|.
T Consensus 52 i~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf~~~p~~~~~~~~~~~~~~~~~l~~~~~t~~~i~~~al~~~l 131 (428)
T PF13347_consen 52 ITDPLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLFSPPPAGLSFTAKLVWLFVFYILFDIAYTFVQIPYNALIPEL 131 (428)
T ss_pred hcCCcEEEEEeeecccccccceEeehhhHHHHHHHHHhhccccchhhhhhHHHHHHHHHHHHHHhhhhccCchhhcCccc
Confidence 34558999999 899887654 5777777777777665 4 1 22346677777888888899999999999
Q ss_pred CC-CCCccchhchHHHHHHHHHHHHHHHhhhcccC-----Cc-cchHHHHhhHHHHHHHHHH-hhcCCcChHHHHhcCCH
Q 014616 75 SP-SEVRGGLVSTNVLMITSGQFLSYLVNLAFTEV-----PG-TWRWMLGVSAVPAIIQFVL-MLFMPESPRWLFMKSDK 146 (421)
Q Consensus 75 ~p-~~~rg~~~~~~~~~~~~g~~l~~~~~~~~~~~-----~~-~Wr~~f~~~~~~~l~~~~~-~~~~~esp~~~~~~~~~ 146 (421)
.+ +++|.+..+.-......|.++...+...+... .. +|++...+.++..++..++ ....+|.++ +.
T Consensus 132 t~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~~v~~iv~~v~~~i~~~~~ke~~~------~~ 205 (428)
T PF13347_consen 132 TPDPDERTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDTSNGYRWMALVLAIVGLVFFLITFFFVKERSV------EV 205 (428)
T ss_pred cccHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCccchHHHHHHHHHHHHHHHHhhhhhheeeeccc------cc
Confidence 98 47899888877777777775444333332221 11 5999998888777766555 344566111 00
Q ss_pred HHHHHHHHHhcChhhhHHHHHHHHHHHHHHHhhcccccHHHhhcchhHHHHHHHHHHHHHHHhhcCcceehhchHHHHHH
Q 014616 147 EKAILVLSKIYDIARLEDEIDHLSAAAEEELRKKKTVRYLDVFKSKEIRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQM 226 (421)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (421)
.+++.+.+-....+++++||+++........... .........+++.+.
T Consensus 206 --------------------------~~~~~~~~~~~~~~~~~~nr~~~~l~~~~~~~~~-----~~~~~~~~~~y~~~~ 254 (428)
T PF13347_consen 206 --------------------------TEQEKKISLRDSLRSLFRNRPFRILLLAFFLQWL-----AFALMNTFLPYYFTY 254 (428)
T ss_pred --------------------------cccccccccccchhhhcccchHHHHHHHHHHHHh-----hhhhhhhHHHHHHHH
Confidence 0000111112346677888887765444332211 112222233444443
Q ss_pred -cCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHhhHHHHHHHHHHHHHHhhCCCCCCCcchhHHHHHHHH
Q 014616 227 -AGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLA 305 (421)
Q Consensus 227 -~g~~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (421)
.+.+ ...+.... ...+..+++.++.++++||+|+|+....+....+++.+.+.+... .+ . +.... ..
T Consensus 255 vl~~~-~~~~~~~~-~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~----~~----~-~~~~i-~~ 322 (428)
T PF13347_consen 255 VLGNE-GLISIFML-IFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGFLLLFFLGP----GS----P-WLVLI-LF 322 (428)
T ss_pred HhcCc-hhhHHHHH-HHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHHHHHHHHHHh----hh----H-HHHHH-HH
Confidence 3433 33333333 334457888999999999999999888777666666555443211 00 1 11111 12
Q ss_pred HHHHHhhcccccccceeccccCcc-------chhhhhhHHHHHHHHHHHHHHHHHhHHHHHHcCc
Q 014616 306 LYIAFFAPGMGPVPWTLNSEVYPE-------QYRGICGGMSATVNWISNLIVAQTFLTVAELVGT 363 (421)
Q Consensus 306 ~~~~~~~~g~~~~~~~~~~e~~p~-------~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~ 363 (421)
..............+++.+|..+. +..|...++.+....++..+++.+.+.+.+..|+
T Consensus 323 ~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~l~~~Gy 387 (428)
T PF13347_consen 323 ILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLLLALVGY 387 (428)
T ss_pred HHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHHHHHhCc
Confidence 222222334456677888888763 3347778888888889988888888877766553
|
|
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.4e-14 Score=133.36 Aligned_cols=275 Identities=13% Similarity=0.137 Sum_probs=168.6
Q ss_pred HhcCChhHHHHHHHHHHhhhhhhhhhHHHHHhhcCCCCCccchhchHHHHHHHHHHHHHHHhhhcccC------------
Q 014616 41 AAAPDPYVLILGRLLVGLGVGIASVTAPVYIAEASPSEVRGGLVSTNVLMITSGQFLSYLVNLAFTEV------------ 108 (421)
Q Consensus 41 ~~~~s~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg~~~~~~~~~~~~g~~l~~~~~~~~~~~------------ 108 (421)
+...+|..+++.-++.|.|.+...+....++++..|+|++.+.++..+....+|..++|.+...+...
T Consensus 5 ~~~~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~~~~ 84 (310)
T TIGR01272 5 ASQRYYVLFLGALFVLASGLTILQVAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQVATA 84 (310)
T ss_pred HHhhHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhhhhh
Confidence 34568999999999999999999999999999999999999999999999999999999888765421
Q ss_pred ---CccchHHHHhhHHHHHHHHHHhhc--CCcChHHHHhcCCHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHhhcccc
Q 014616 109 ---PGTWRWMLGVSAVPAIIQFVLMLF--MPESPRWLFMKSDKEKAILVLSKIYDIARLEDEIDHLSAAAEEELRKKKTV 183 (421)
Q Consensus 109 ---~~~Wr~~f~~~~~~~l~~~~~~~~--~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (421)
..+||++|++.+...++..+.+.+ +||.+. ++.++ .. + ++..
T Consensus 85 ~~~~~~~~~~yl~ia~~~~~~~i~~~~~~~p~~~~-----~~~~~-------------------------~~--~-~~~~ 131 (310)
T TIGR01272 85 NAEAAKVHTPYLLLAGALAVLAIIFAFLPLPELQE-----ADVAR-------------------------VS--S-GDTT 131 (310)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCc-----ccccc-------------------------cc--c-cccc
Confidence 135999999766554444333333 455321 00000 00 0 0000
Q ss_pred cHHHhhcchhHHHHHHHHHHHHHHHhhcCcceehhchHHHHHH---cCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 014616 184 RYLDVFKSKEIRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQM---AGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHF 260 (421)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~g~~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~ 260 (421)
+..+.+++|.++...+.. +.....-.....+.+.++.+ .|.+..+.+..... ..+...+|.+++++++||+
T Consensus 132 ~~~~~~~~~~~~l~~~~~-----f~yvg~e~~~~~w~~~yl~~~~~~g~s~~~a~~~~s~-~~~~~~iGr~~~~~l~~r~ 205 (310)
T TIGR01272 132 QKTSAFQFTHLVLGALGI-----FVYVGAEVSAGSFLVNFLSDPHALGLPEDQAAHFTAY-TWGGAMVGRFIGSAVMPMI 205 (310)
T ss_pred chhhHHhhHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHh
Confidence 112344555544322211 11111112233355666653 37776666655444 4455789999999999999
Q ss_pred CChhHHHHhhHHHHHHHHHHHHHHhhCCCCCCCcchhHHHHHHHHHHHHHhhcccccccceeccccCccchhhhhhHHHH
Q 014616 261 GRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSA 340 (421)
Q Consensus 261 grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~p~~~r~~~~g~~~ 340 (421)
++|+.+..+.....+...+.. .. . . . .... .+. ...++.....|...+...+.+|++ .+.+.++.
T Consensus 206 g~~~~l~~~~~l~~~~~~l~~---~~-~-~---~-~~~~---~~~-l~g~~~s~i~P~~~s~a~~~~~~~-~~~asai~- 270 (310)
T TIGR01272 206 SQGRYLAFNAFLAVLLSIGAA---LT-H-G---Y-VAMW---FVL-ALGLFNSIMFPTIFSLALNALGRH-TSQGSGIL- 270 (310)
T ss_pred CHHHHHHHHHHHHHHHHHHHH---Hc-C-C---H-HHHH---HHH-HHHHHHHHHHHHHHHHHHhhhhhh-hhhhHHHH-
Confidence 998876554443333322111 11 1 0 0 0111 111 122333345577677777877764 34555664
Q ss_pred HHHHHHHHHHHHHhHHHHHHcCcchhhHH
Q 014616 341 TVNWISNLIVAQTFLTVAELVGTGATFLI 369 (421)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 369 (421)
..+.+|+.+.|.+.+.+.|..|.+..+++
T Consensus 271 ~~~~~Gg~i~P~l~G~lad~~g~~~a~~v 299 (310)
T TIGR01272 271 CLAIVGGAIVPLLQGSLADCLGIQLAFAL 299 (310)
T ss_pred HHHHhcchHHHHHHHHHHHhccchHHHHH
Confidence 56778999999999999998887666653
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=3.1e-13 Score=130.47 Aligned_cols=124 Identities=21% Similarity=0.306 Sum_probs=95.2
Q ss_pred hhhHHHHhhhhhhhccc-chhHHHHHHHHHHHHHHHHHHhcC-ChhHHHHHHHHHHhhhhhhhhhHHHHHhhcCCCC--C
Q 014616 4 VGAIVGAASGGWINDAY-GRKKATLLADVVFTAGAIIMAAAP-DPYVLILGRLLVGLGVGIASVTAPVYIAEASPSE--V 79 (421)
Q Consensus 4 ig~~~g~~~~g~l~dr~-Grr~~~~~~~~l~~i~~~~~~~~~-s~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~--~ 79 (421)
+...++.+++|+++||+ ||||++.++.++.+++..+.+..+ +...+.+.-.+.++|.|...+...++++|.+|++ +
T Consensus 56 ~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg~lll~~~~~~~~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~~ 135 (493)
T PRK15462 56 SLVYVTPILGGFLADKVLGNRMAVMLGALLMAIGHVVLGASEIHPSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPR 135 (493)
T ss_pred HHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcccccccHHHHHHHHCCCCCcc
Confidence 45677889999999999 999999999999999988776543 2233444445555667777777788999999876 6
Q ss_pred ccchhchHHHHHHHHHHHHHHHhhhcccCCccchHHHHhhHHHHHHHHH
Q 014616 80 RGGLVSTNVLMITSGQFLSYLVNLAFTEVPGTWRWMLGVSAVPAIIQFV 128 (421)
Q Consensus 80 rg~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~Wr~~f~~~~~~~l~~~~ 128 (421)
|+...+......++|..+++.+...+.+.. +||+.|.+.++..++.++
T Consensus 136 R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~-Gw~~~F~iaaigm~l~li 183 (493)
T PRK15462 136 RDGGFSLMYAAGNVGSIIAPIACGYAQEEY-SWAMGFGLAAVGMIAGLV 183 (493)
T ss_pred ccceehHHHHHHHHHHHHHHHHHHHHHhhh-ChHHHHHHHHHHHHHHHH
Confidence 887788877788889999988888776555 599999987654444333
|
|
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=5e-14 Score=137.20 Aligned_cols=309 Identities=12% Similarity=0.086 Sum_probs=158.9
Q ss_pred hhhHHHHhhhhhhhccc----chhHHH-HHHHHHHHHHHHHHHhcC-----Ch--hHHHHHHHHHHhhhhhhhhhHHHHH
Q 014616 4 VGAIVGAASGGWINDAY----GRKKAT-LLADVVFTAGAIIMAAAP-----DP--YVLILGRLLVGLGVGIASVTAPVYI 71 (421)
Q Consensus 4 ig~~~g~~~~g~l~dr~----Grr~~~-~~~~~l~~i~~~~~~~~~-----s~--~~l~~~R~l~G~g~g~~~~~~~~~i 71 (421)
+...+..++.|+++||. ||||.+ .++.+...+.+.+....+ +. ...+..-++.+++.+...+...++.
T Consensus 55 ~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~ 134 (448)
T PRK09848 55 VFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLMIFSVLVFWVPTDWSHSSKVVYAYLTYMGLGLCYSLVNIPYGSLA 134 (448)
T ss_pred HHHHHhhhhheeeeecCCCCCcCchHHHHHHHHHHHHHHHHHHhCcCCCCcchHHHHHHHHHHHHHHHHHHhcccHhhhh
Confidence 45567889999999996 777755 555555555555432211 11 1233445677888888887777777
Q ss_pred hhcCCC-CCccchhchHHH-----HHHHHHHHHHHHhhhcccC-CccchHHHHhhHHHHHHHH-HHhhcCCcChHHHHhc
Q 014616 72 AEASPS-EVRGGLVSTNVL-----MITSGQFLSYLVNLAFTEV-PGTWRWMLGVSAVPAIIQF-VLMLFMPESPRWLFMK 143 (421)
Q Consensus 72 ~e~~p~-~~rg~~~~~~~~-----~~~~g~~l~~~~~~~~~~~-~~~Wr~~f~~~~~~~l~~~-~~~~~~~esp~~~~~~ 143 (421)
.|..++ ++|....+.-.. ....+..+++.+....... ..+|.....+.++.+++.. +.....||++..
T Consensus 135 ~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~~p~i~~~~g~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~e~~~~---- 210 (448)
T PRK09848 135 TAMTQQPQSRARLGAARGIAASLTFVCLAFLIGPSIKNSSPEEMVSVYHFWTIVLAIAGMVLYFICFKSTRENVVR---- 210 (448)
T ss_pred hhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHHcCcEeccCC----
Confidence 776644 678766544332 2234444555544332111 1112211122222222222 222334554310
Q ss_pred CCHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHhhcccccHHHhhcchhHHHHHHHHHHHHHHHhhcCcceehhchHHH
Q 014616 144 SDKEKAILVLSKIYDIARLEDEIDHLSAAAEEELRKKKTVRYLDVFKSKEIRLAFLAGAGLQAFQQFTGINTVMYYSPTI 223 (421)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (421)
+ . +++.....+++++|||.+.............. .......|++
T Consensus 211 ~-~------------------------------~~~~~~~~~~~l~~n~~f~~~~~~~~~~~~~~-----~~~~~~~~~~ 254 (448)
T PRK09848 211 I-V------------------------------AQPSLKISLQTLKRNRPLFMLCIGALCVLIST-----FAVSASSLFY 254 (448)
T ss_pred C-c------------------------------cCCCHHHHHHHHhCCchHHHHHHHHHHHHHHH-----HHHhhhheee
Confidence 0 0 00000112456788888765544333221111 1111223334
Q ss_pred HHH-cCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHhhHHHHHHHHHHHHHHhhCCCCCCCcchhHHHHH
Q 014616 224 VQM-AGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVI 302 (421)
Q Consensus 224 ~~~-~g~~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 302 (421)
.++ .|.+ ...+.+.........+++.++.+++.||+++|+.+..+..+..++.+.+.+ . ...+ .+....
T Consensus 255 ~~~~~g~~-~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~---~-~~~~-----~~~~~~ 324 (448)
T PRK09848 255 VRYVLNDT-GLFTVLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFW---V-SVWS-----LPVALV 324 (448)
T ss_pred EeeecCCh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHH---c-Cchh-----HHHHHH
Confidence 443 3443 334444444333446778889999999999999887766555555443322 1 1100 111111
Q ss_pred HHHHHHHHhhcccccccceeccccCccc-------hhhhhhHHHHHHHHHHHHHHHHHhHHHHHHcCc
Q 014616 303 GLALYIAFFAPGMGPVPWTLNSEVYPEQ-------YRGICGGMSATVNWISNLIVAQTFLTVAELVGT 363 (421)
Q Consensus 303 ~~~~~~~~~~~g~~~~~~~~~~e~~p~~-------~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~ 363 (421)
...+. ........+..+++.+|..|.+ .+|...++.+....++..+++.+.+.+.+..|+
T Consensus 325 ~~~l~-g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~l~~~G~ 391 (448)
T PRK09848 325 ALAIA-SIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFILGLSGY 391 (448)
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 11111 1111122344455666666543 458888999999999999998888877766654
|
|
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=7.4e-13 Score=128.96 Aligned_cols=305 Identities=14% Similarity=0.124 Sum_probs=157.6
Q ss_pred HHHhhhhhhhcc----cchhHHHH-HHHHHHHHHHHHHHhcCC------hhHHHHHHHHHHhhhhhhhhhHHHHHhhcCC
Q 014616 8 VGAASGGWINDA----YGRKKATL-LADVVFTAGAIIMAAAPD------PYVLILGRLLVGLGVGIASVTAPVYIAEASP 76 (421)
Q Consensus 8 ~g~~~~g~l~dr----~Grr~~~~-~~~~l~~i~~~~~~~~~s------~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p 76 (421)
+..++.|.++|| +|||+.++ ++.+..+++..++-..++ ..-+.+.-++..++.........++.+|..+
T Consensus 60 i~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf~~p~~s~~~~~~y~~~~~~~~~~~~t~~~ipy~al~~~lt~ 139 (460)
T PRK11462 60 ISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYSTPDLSMNGKMIYAAITYTLLTLLYTVVNIPYCALGGVITN 139 (460)
T ss_pred HHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHHHHHHHHhccHHHHHHHhcC
Confidence 556788999995 79886654 566777777777665553 2234455666788888888888899999987
Q ss_pred -CCCccchhchHHHHHHHHHHHHHHHhhhccc------CCccchHHHHhhHHHHHHHHHHh-hcCCcChHHHHhcCCHHH
Q 014616 77 -SEVRGGLVSTNVLMITSGQFLSYLVNLAFTE------VPGTWRWMLGVSAVPAIIQFVLM-LFMPESPRWLFMKSDKEK 148 (421)
Q Consensus 77 -~~~rg~~~~~~~~~~~~g~~l~~~~~~~~~~------~~~~Wr~~f~~~~~~~l~~~~~~-~~~~esp~~~~~~~~~~~ 148 (421)
+|||++..+.-..+..+|..+++.+...+.. ...+|+....+.++++++...+. ...+|.++- +.+
T Consensus 140 d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~g~~~~~~g~~~~~~i~~ii~~i~~~i~~~~~kE~~~~-----~~~- 213 (460)
T PRK11462 140 DPTQRISLQSWRFVLATAGGMLSTVLMMPLVNLIGGDNKPLGFQGGIAVLSVVAFMMLAFCFFTTKERVEA-----PPT- 213 (460)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHHhcceeccCC-----Ccc-
Confidence 6889988887777777766555444322111 11247777766666555544333 233443210 000
Q ss_pred HHHHHHHhcChhhhHHHHHHHHHHHHHHHhhcccccHHHhhcchhHHHHHHHHHHHHHHHhhcCcceehhchHHHHHHcC
Q 014616 149 AILVLSKIYDIARLEDEIDHLSAAAEEELRKKKTVRYLDVFKSKEIRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQMAG 228 (421)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 228 (421)
+.+.....+..++||.++............... ......||..++. +
T Consensus 214 -----------------------------~~~~~~~l~~~~~Nk~~~~l~~~~~~~~~~~~~-~~~~~~y~~~y~~---g 260 (460)
T PRK11462 214 -----------------------------TTSMREDLRDIWQNDQWRIVGLLTIFNILAVCV-RGGAMMYYVTWIL---G 260 (460)
T ss_pred -----------------------------CCCHHHHHHHHhCChHHHHHHHHHHHHHHHHHH-HHhHhhhhhhhhc---C
Confidence 000001234566777765443222111111111 1111223322221 2
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHhhHHHHHHHHHHHHHHhhCCCCCCCcchhHHHHHHHHHHH
Q 014616 229 FQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLALYI 308 (421)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (421)
+....+. .........+++.+++++++||+++|+..........+..+++ .+ .. ... .. .. .....+.
T Consensus 261 -~~~~~~~-~l~~~~i~~iig~~l~~~l~~r~gkk~~~~~~~~~~~~~~~~~--~~-~~-~~~---~~-~~-~~~~~l~- 328 (460)
T PRK11462 261 -TPEVFVA-FLTTYCVGNLIGSALAKPLTDWKCKVTIFWWTNALLAVISLAM--FF-VP-MQA---SI-TM-FVFIFVI- 328 (460)
T ss_pred -ChHHHHH-HHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHH--HH-hc-hhH---HH-HH-HHHHHHH-
Confidence 2222222 2233344567888999999999999887653332222212111 11 11 100 00 01 1111111
Q ss_pred HHhhcccccccceeccccCc-----cchh--hhhhHHHHHHHHHHHHHHHHHhHHHHHHcCc
Q 014616 309 AFFAPGMGPVPWTLNSEVYP-----EQYR--GICGGMSATVNWISNLIVAQTFLTVAELVGT 363 (421)
Q Consensus 309 ~~~~~g~~~~~~~~~~e~~p-----~~~r--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~ 363 (421)
.+......++.+++..|..+ +..| |...+.......++..+++.+.+.+.+..|+
T Consensus 329 g~~~~~~~~l~~~m~ad~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~i~g~iL~~~Gy 390 (460)
T PRK11462 329 GVLHQLVTPIQWVMMSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGALIGWMLAYGGY 390 (460)
T ss_pred HHHHHHHHHHHHHHHHHhHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 11112223444455554433 2233 4444555677888888888877777665554
|
|
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=4.8e-14 Score=138.78 Aligned_cols=154 Identities=16% Similarity=0.177 Sum_probs=113.1
Q ss_pred hhhhHHHHhhhhhhhcccchhHHHHHHHHHHHHHHHH---HHhcCChhHHHHHHHHHHhhhhhhhhhHHHHHhhcCCCCC
Q 014616 3 LVGAIVGAASGGWINDAYGRKKATLLADVVFTAGAII---MAAAPDPYVLILGRLLVGLGVGIASVTAPVYIAEASPSEV 79 (421)
Q Consensus 3 ~ig~~~g~~~~g~l~dr~Grr~~~~~~~~l~~i~~~~---~~~~~s~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~ 79 (421)
.+|.++|.++.|+++||+|||+++..+.++..+++.. ...+++...++++|++.|++.+........++.|.+|++.
T Consensus 296 ~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~p~~~ 375 (490)
T PRK10642 296 MIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFILINSNVIGLIFAGLLMLAVILNCFTGVMASTLPAMFPTHI 375 (490)
T ss_pred HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcc
Confidence 4678888999999999999999988877655544432 2334567788889999999888777778888999999999
Q ss_pred ccchhch-HHHHHHHHHHHHHHHhhhcccCCccchHHHHhhHHHHHHHHHHhhcCCcChHHHHhc-----CCHHHHHHHH
Q 014616 80 RGGLVST-NVLMITSGQFLSYLVNLAFTEVPGTWRWMLGVSAVPAIIQFVLMLFMPESPRWLFMK-----SDKEKAILVL 153 (421)
Q Consensus 80 rg~~~~~-~~~~~~~g~~l~~~~~~~~~~~~~~Wr~~f~~~~~~~l~~~~~~~~~~esp~~~~~~-----~~~~~~~~~~ 153 (421)
|+...+. ++.....|. +++.+...+....++|+.++++..+++++.++..+++||+|+|+..+ ++.|++.+.+
T Consensus 376 Rg~~~g~~~~~~~~~g~-~~p~i~g~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~pes~~~~~~~~~~~~~~~~~a~~~l 454 (490)
T PRK10642 376 RYSALAAAFNISVLVAG-LTPTLAAWLVESTQNLMMPAYYLMVVAVIGLITGVTMKETANRPLKGATPAASDIQEAKEIL 454 (490)
T ss_pred chHHHHHHHHHHHHHHH-HHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHhccccCCCCCCccccccchhhHHHHh
Confidence 9987775 444444443 44444433333333588887777777777766667789999997754 7788888888
Q ss_pred HHhc
Q 014616 154 SKIY 157 (421)
Q Consensus 154 ~~~~ 157 (421)
.+.+
T Consensus 455 ~~~~ 458 (490)
T PRK10642 455 VEHY 458 (490)
T ss_pred hccc
Confidence 7775
|
|
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=99.52 E-value=2.3e-13 Score=109.72 Aligned_cols=133 Identities=26% Similarity=0.439 Sum_probs=114.7
Q ss_pred chhhhHHHHhhhhhhhcccchhHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHhhhhhhhhhHHHHHhhcCCCCCcc
Q 014616 2 ALVGAIVGAASGGWINDAYGRKKATLLADVVFTAGAIIMAAAPDPYVLILGRLLVGLGVGIASVTAPVYIAEASPSEVRG 81 (421)
Q Consensus 2 ~~ig~~~g~~~~g~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~s~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg 81 (421)
..++.++++++.|++.||+|||+.+..+..+..++.+...+.++++.+.+.+++.|++.+...+....++.|..|+++|+
T Consensus 7 ~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 86 (141)
T TIGR00880 7 YALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFALVAGAALIADIYPPEERG 86 (141)
T ss_pred ehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCChhhhh
Confidence 35788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhchHHHHHHHHHHHHHHHhhhcccCCccchHHHHhhHHHHHHHHHHh-hcCCc
Q 014616 82 GLVSTNVLMITSGQFLSYLVNLAFTEVPGTWRWMLGVSAVPAIIQFVLM-LFMPE 135 (421)
Q Consensus 82 ~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~Wr~~f~~~~~~~l~~~~~~-~~~~e 135 (421)
+..+........|..+++.+.....+.. +|++.|++.+...++..+.. ...||
T Consensus 87 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (141)
T TIGR00880 87 VALGLMSAGIALGPLLGPPLGGVLAQFL-GWRAPFLFLAILALAAFILLAFLLPE 140 (141)
T ss_pred HHHHHHHHhHHHHHHHhHHhHHHHhccc-chHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 9999988888899988888877665544 59999998877666655443 34454
|
|
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.3e-13 Score=127.02 Aligned_cols=338 Identities=17% Similarity=0.159 Sum_probs=174.4
Q ss_pred hhhHHHHhhhhhhhcccchhHHHHHHHHHH--HHHHHHH-Hh----cCCh-hHHHHHHHHHHhhhhhhhhhHHHHHhhcC
Q 014616 4 VGAIVGAASGGWINDAYGRKKATLLADVVF--TAGAIIM-AA----APDP-YVLILGRLLVGLGVGIASVTAPVYIAEAS 75 (421)
Q Consensus 4 ig~~~g~~~~g~l~dr~Grr~~~~~~~~l~--~i~~~~~-~~----~~s~-~~l~~~R~l~G~g~g~~~~~~~~~i~e~~ 75 (421)
+..++.+++.|.++||+|.||-+++..... ..+.... .+ ..|. ...+++-+..|+...+..++..+++.++.
T Consensus 54 ~~~l~~qp~~G~i~Dklg~kK~Ll~~i~~l~~l~~pff~~v~~pll~~n~~lg~iig~i~l~~~f~~~~~~~Ea~~er~s 133 (412)
T PF01306_consen 54 LFALLAQPVYGFISDKLGLKKHLLWFIAILLLLFGPFFIYVFGPLLQSNFWLGAIIGGIYLGLVFNAGVPLSEAYAERVS 133 (412)
T ss_dssp HHHHHTHHHHHHHHHHCTTCSHHHHHHHHHHHTCHHHHHHTHHHHHHTT-HHHHHHTTTTTTTTTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHH
Confidence 456777889999999999776544433222 2222221 11 1232 22333444455556666777777766655
Q ss_pred CCCCccchhchHHHHHHHHHHHHHHHhhhcccCCccchHHHHhhHHHHHHHHHHhhc-CCcChHHHHhcCCHHHHHHHHH
Q 014616 76 PSEVRGGLVSTNVLMITSGQFLSYLVNLAFTEVPGTWRWMLGVSAVPAIIQFVLMLF-MPESPRWLFMKSDKEKAILVLS 154 (421)
Q Consensus 76 p~~~rg~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~Wr~~f~~~~~~~l~~~~~~~~-~~esp~~~~~~~~~~~~~~~~~ 154 (421)
-++ +.=.|-.-...++|..++..+++.+... +=+..|++....+++..++.+. -|+.++.....+ .++
T Consensus 134 r~~--~feYG~~R~wGSig~ai~s~~~G~L~~i--~p~~~fwi~s~~~~il~lll~~~~~~~~~~~~~~~-~~~------ 202 (412)
T PF01306_consen 134 RRN--GFEYGRARMWGSIGFAIASLLAGILFNI--NPNIIFWIASAAAIILLLLLLLLKPDVPPQAEVAD-ALG------ 202 (412)
T ss_dssp HHH--SS-HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHSS---SSSSS-SST-TSS------
T ss_pred HHh--cCCcchHHHHhhHHHHHHHHHhheeeee--CccHHHHHHHHHHHHHHHHHHHcCCcCchhhhhhc-ccc------
Confidence 222 1122333345555565555555443221 1356777766555554444333 344332111000 000
Q ss_pred HhcChhhhHHHHHHHHHHHHHHHhhcccccHHHhhcchhHHHHHHHHHHHHHHHhhcCcceehhchHHHHHHc----CCC
Q 014616 155 KIYDIARLEDEIDHLSAAAEEELRKKKTVRYLDVFKSKEIRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQMA----GFQ 230 (421)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----g~~ 230 (421)
.+.++.+.+...+++|+|++|...+........... .-...|.+.... +.+
T Consensus 203 --------------------~~~~~~~~~~~~~l~k~~~fw~~~l~v~g~~~~Y~v-----fdqqf~~y~~~~f~~~~~g 257 (412)
T PF01306_consen 203 --------------------AKKDKVSLKDVLSLFKMRNFWFFVLFVIGVAAIYDV-----FDQQFPIYFASFFQSAGQG 257 (412)
T ss_dssp --------------------S------HHHHHHHTTSHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHTSSSHHHH
T ss_pred --------------------cCCCCCcHHHHHHHhcchhHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHhcccccC
Confidence 000001112345788999988755543322221111 111123333322 222
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHhhHHHHHHHHHHHHHHhhCCCCCCCcchhHHHHHHHHHHHHH
Q 014616 231 SNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLALYIAF 310 (421)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (421)
....+.+.+ ......++...+..++.+|+|.|+.++.+..++.+=.+..++. .+ ..++...-......+
T Consensus 258 ~~~~G~l~s-~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~~~~------~~----~~~i~~~klLH~~e~ 326 (412)
T PF01306_consen 258 NQMYGYLWS-VQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGSGFA------TN----PWVISLIKLLHALEF 326 (412)
T ss_dssp HHHHHHHHH-HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT--------S----HHHHHHHHHHHHHHH
T ss_pred hhHHhHHHH-HHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHHhhh------cc----hHHHHHHHHHHHHHH
Confidence 233344433 3445588888899999999999998876654444333322211 00 011111111111111
Q ss_pred hhcccccccceeccccCccchhhhhhHHH-HHHHHHHHHHHHHHhHHHHHHcCcchhhHHHHHHHHHHHHHHHhhccCCC
Q 014616 311 FAPGMGPVPWTLNSEVYPEQYRGICGGMS-ATVNWISNLIVAQTFLTVAELVGTGATFLILAGIAVLAVVFVILFVPETQ 389 (421)
Q Consensus 311 ~~~g~~~~~~~~~~e~~p~~~r~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~et~ 389 (421)
... ..-..=+.++.+|++..++...+. +....++..+.+...+.+.|..|.+.++++++++.+...++..+.+++.|
T Consensus 327 ~l~--lva~fkYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~G~~~tylimg~iv~~~~li~~f~l~~~~ 404 (412)
T PF01306_consen 327 PLL--LVAAFKYITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLYDRIGFQHTYLIMGLIVLPFTLISAFTLKKDK 404 (412)
T ss_dssp HHH--HHHHHHHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS--SS
T ss_pred HHH--HHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHhhcCcHHHHHHHHHHHHHHHHHheeeecCCC
Confidence 110 111124678999999888877775 45677888899999999999999988999999998888888888776655
Q ss_pred C
Q 014616 390 G 390 (421)
Q Consensus 390 ~ 390 (421)
+
T Consensus 405 ~ 405 (412)
T PF01306_consen 405 K 405 (412)
T ss_dssp S
T ss_pred c
Confidence 4
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.2e-11 Score=116.78 Aligned_cols=311 Identities=20% Similarity=0.245 Sum_probs=179.0
Q ss_pred HHHhhhhhhhcc----cchhHH-HHHHHHHHHHHHHHHHhcCC------hhHHHHHHHHHHhhhhhhhhhHHHHHhhcCC
Q 014616 8 VGAASGGWINDA----YGRKKA-TLLADVVFTAGAIIMAAAPD------PYVLILGRLLVGLGVGIASVTAPVYIAEASP 76 (421)
Q Consensus 8 ~g~~~~g~l~dr----~Grr~~-~~~~~~l~~i~~~~~~~~~s------~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p 76 (421)
+..++.|.+.|| +||||. ++++.+-+++.+.++-.+++ ..-..+.-++.+++.........++.+|+.+
T Consensus 63 i~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i~~~l~F~~p~~~~~~k~~ya~vtY~l~~l~YT~vniPy~al~~~iT~ 142 (467)
T COG2211 63 ITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIVAVLLFITPDFSMTGKLIYALVTYMLLGLGYTLVNIPYGALGPEITQ 142 (467)
T ss_pred HhcchheeeecccccccccccHHHHHHhHHHHHHHHHHHcCCCcccCcchHHHHHHHHHHHHHHHheeCchhhcchhhcC
Confidence 456788999995 887754 56677889999999888774 2334567788889999998889999999865
Q ss_pred -CCCccchhchHHHHHHHHHHHHH-----HHhhhcccC-CccchHHHHhhHHHHHHHHHHhh-cCCcChHHHHhcCCHHH
Q 014616 77 -SEVRGGLVSTNVLMITSGQFLSY-----LVNLAFTEV-PGTWRWMLGVSAVPAIIQFVLML-FMPESPRWLFMKSDKEK 148 (421)
Q Consensus 77 -~~~rg~~~~~~~~~~~~g~~l~~-----~~~~~~~~~-~~~Wr~~f~~~~~~~l~~~~~~~-~~~esp~~~~~~~~~~~ 148 (421)
++||.+..+.-+.....|.++.. ++...-... ..+|+..-.+.++.+++.++..+ -.+|-+.. .+.
T Consensus 143 d~~ER~~l~s~R~~~~~~g~~l~~~~~~plv~~~g~~~~~~g~~~~~~~~~vi~~i~~l~~~~~v~ER~~~--~~~---- 216 (467)
T COG2211 143 DPQERASLTSWRMVFASLGGLLVAVLFPPLVKLFGGGDKALGYQGTALVLGVIGVILLLFCFFNVKERVVE--TQP---- 216 (467)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcccCc--ccc----
Confidence 58898887776666666654433 222222221 23577776666666655554433 23443220 000
Q ss_pred HHHHHHHhcChhhhHHHHHHHHHHHHHHHhhcccccHHHhhcchhHHHHHHHHHHHHHHHhhcCcceehhchHHHHHHcC
Q 014616 149 AILVLSKIYDIARLEDEIDHLSAAAEEELRKKKTVRYLDVFKSKEIRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQMAG 228 (421)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 228 (421)
.++..+.+...+....++|+++...+..........+... ....||..+ ..|
T Consensus 217 ------------------------~~~~~~~~~~~~~~~~~~Nrp~~~~l~~~l~~~~~~~i~~-s~~~yy~~y---~lg 268 (467)
T COG2211 217 ------------------------TKTGVKLKLKDSFLLIFKNRPLLLLLLMNLLLFIAFNIRG-SIMVYYVTY---VLG 268 (467)
T ss_pred ------------------------CcccccccHHHHHHHHHccchHHHHHHHHHHHHHHHHHHh-hhhheeEEE---EcC
Confidence 0000111111234457788887665543322221111111 111222211 234
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHhhHHHHHHHHHHHHHHhhCCCCCCCcchhHHHHHHHHHHH
Q 014616 229 FQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLALYI 308 (421)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (421)
.+........ .......+++.++..++++|+|+|+....+.....++...+.+. . .. .. ..+....+..
T Consensus 269 ~~~l~~~~~~-~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~i~~~~~~f~---~-~~----~~--~l~~~~~~i~ 337 (467)
T COG2211 269 DPELFAYLLL-LASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLLYFT---P-AG----SV--VLIVVALIIA 337 (467)
T ss_pred ChHHHHHHHH-HHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHhh---c-Cc----ch--HHHHHHHHHH
Confidence 4444333333 33334456668899999999999999988776666655554432 1 11 11 1111121222
Q ss_pred HHhhcccccccceeccccCc-----c--chhhhhhHHHHHHHHHHHHHHHHHhHHHHHHcCc
Q 014616 309 AFFAPGMGPVPWTLNSEVYP-----E--QYRGICGGMSATVNWISNLIVAQTFLTVAELVGT 363 (421)
Q Consensus 309 ~~~~~g~~~~~~~~~~e~~p-----~--~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~ 363 (421)
........++.|++.+|... + +..|...+.+....-++..++..+.++.....|+
T Consensus 338 ~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~~g~~L~~~Gy 399 (467)
T COG2211 338 GVGTGIANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFIPGWILGAIGY 399 (467)
T ss_pred HHHhhccccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 23334456788888877652 2 2235566777777888888888888887776653
|
|
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.47 E-value=6.5e-12 Score=115.12 Aligned_cols=336 Identities=16% Similarity=0.189 Sum_probs=188.4
Q ss_pred HHHHhhhhhhhcccchhHHHHHHHHH-HHHHHHHHHhcCC--h-hHHHHHHHHHHhhhhhhhhhHHHHHhhcCCCCCccc
Q 014616 7 IVGAASGGWINDAYGRKKATLLADVV-FTAGAIIMAAAPD--P-YVLILGRLLVGLGVGIASVTAPVYIAEASPSEVRGG 82 (421)
Q Consensus 7 ~~g~~~~g~l~dr~Grr~~~~~~~~l-~~i~~~~~~~~~s--~-~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg~ 82 (421)
.+=+++-|.++|+.|+||...-.... ..+.+.+..++++ + ...+..-.+..++.....+...+++.+..++++-++
T Consensus 72 a~LapiLG~iaD~~g~Rk~~~~~f~~i~i~~~~~L~~i~~~s~~~~~l~~~il~~i~~~~s~Vfyds~L~~~~~k~~~~r 151 (438)
T COG2270 72 ALLAPILGTIADYPGPRKKFFGFFTAIGIISTFLLWFIPPGSYLLLLLLFLILASIGFEFSNVFYDSMLPRLTTKDNMGR 151 (438)
T ss_pred HHHHHHhhhhhccCCCcchHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhcchhheehhhHhhhhcCccccCc
Confidence 34457789999999988765554444 4444445566665 3 445667788889999999999999999999988776
Q ss_pred hhchHHHHHHHHHHHHHHHh--hhccc---------------CCccchHHHHhhHHHHHHHH-HHhhcCCcChHHHHhcC
Q 014616 83 LVSTNVLMITSGQFLSYLVN--LAFTE---------------VPGTWRWMLGVSAVPAIIQF-VLMLFMPESPRWLFMKS 144 (421)
Q Consensus 83 ~~~~~~~~~~~g~~l~~~~~--~~~~~---------------~~~~Wr~~f~~~~~~~l~~~-~~~~~~~esp~~~~~~~ 144 (421)
.++........|..+..+.. ..... ...+=|..+.+.++--++.. ......+|.++-.
T Consensus 152 iS~lg~~~gylgs~i~li~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ri~~~l~A~W~li~~iPm~~~v~~~~~~~---- 227 (438)
T COG2270 152 ISGLGWALGYLGSVILLIFVVLGFALGQQTGITIILLGLPPADGEDVRITGLLAALWWLLFALPMILNVHDAEKIS---- 227 (438)
T ss_pred ccccccccccccchHHHHHHHHHHhcccccceeEEeeccCccccccchhHHHHHHHHHHHHHhHHHhccccccccc----
Confidence 65543333333332222211 00000 11125666666554333322 2233344433200
Q ss_pred CHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHhhcccccHHHhhcchhHHHHHHHHHHHHHHHhhcCcceehhchHHHH
Q 014616 145 DKEKAILVLSKIYDIARLEDEIDHLSAAAEEELRKKKTVRYLDVFKSKEIRLAFLAGAGLQAFQQFTGINTVMYYSPTIV 224 (421)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (421)
+.+. +......+++ ..+.+++.+.+.+...++... ...-+.+.+..+...+-
T Consensus 228 ~~~~-----------~~l~~g~k~L------------~~t~k~i~~~~~i~~FLiA~~-----~~~DGv~til~~~~~fg 279 (438)
T COG2270 228 SPPP-----------TALRNGFKEL------------KSTFKEIRGRKNLVLFLIARF-----FYIDGVNTILAMGGVFG 279 (438)
T ss_pred ccch-----------HHHHHHHHHH------------HHHHHHHhcccchHHHHHHHH-----HHHhhHHHHHHHHHHHH
Confidence 0000 0000000111 112334444444443333221 11223333333444444
Q ss_pred H-HcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHhhHHHHHHHHHHHHHHhhCCCCCCCcchhHHHHHH
Q 014616 225 Q-MAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIG 303 (421)
Q Consensus 225 ~-~~g~~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 303 (421)
. ++|.+..+... ..+......++|+++.|++.||++.|+++..+.+..++..+.... .. . ....|+
T Consensus 280 ~~~~gls~~~lll-~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~~~~~~--~~-~-----~~~f~i---- 346 (438)
T COG2270 280 AADLGLSSTELLL-IGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAALYLIF--LE-G-----ELDFWI---- 346 (438)
T ss_pred HHHcCccHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHHHHHHH--cc-c-----cHHHHH----
Confidence 4 67888777644 444455668999999999999999998877665544433322211 11 1 111111
Q ss_pred HHHHHHHhhcccccccceeccccCccchhhhhhHHHHHHHHHHHHHHHHHhHHHHHHcCcc-hhhHHHHHHHHHHHHHHH
Q 014616 304 LALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELVGTG-ATFLILAGIAVLAVVFVI 382 (421)
Q Consensus 304 ~~~~~~~~~~g~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~ 382 (421)
+.+..+.+..+.+..+-++..++.|++.-+...|+.+..++...+.+|+.+....+..|.. ..+..+..+..+... .+
T Consensus 347 ~gll~g~s~G~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg~~r~g~~~i~vll~iGl~-~L 425 (438)
T COG2270 347 LGLLVGTSLGGAQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITGSSRAGVLSIIVLLLIGLL-LL 425 (438)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhhHh-hE
Confidence 2233334445566667788899999999999999999999999999999999988888754 233333333334433 33
Q ss_pred hhccCC
Q 014616 383 LFVPET 388 (421)
Q Consensus 383 ~~~~et 388 (421)
...|+.
T Consensus 426 ~~v~~~ 431 (438)
T COG2270 426 LRVKVP 431 (438)
T ss_pred EeecCC
Confidence 444544
|
|
| >KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.1e-12 Score=113.20 Aligned_cols=335 Identities=16% Similarity=0.172 Sum_probs=176.4
Q ss_pred hhhhhhhcc-cchhHHHHHHHHHHHHHHHHHH---hcCChhHHHHHHHHHHhhhhhhhhhHHHHHhhcCCCCCccchhch
Q 014616 11 ASGGWINDA-YGRKKATLLADVVFTAGAIIMA---AAPDPYVLILGRLLVGLGVGIASVTAPVYIAEASPSEVRGGLVST 86 (421)
Q Consensus 11 ~~~g~l~dr-~Grr~~~~~~~~l~~i~~~~~~---~~~s~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg~~~~~ 86 (421)
+++|++.|| +|-|..-.+-++...++.+..+ ..+.+|+++++|++.|+|.-...++-..+...|+..|+.+...+.
T Consensus 97 ffgGflidr~fgir~gtii~~~fv~~GqliFa~Ggi~~aFw~M~~GRF~FGIGgESlAVaQN~yav~wFKGKELn~vfGl 176 (459)
T KOG4686|consen 97 FFGGFLIDRRFGIRLGTIILCIFVFLGQLIFAAGGISHAFWTMLAGRFLFGIGGESLAVAQNKYAVYWFKGKELNFVFGL 176 (459)
T ss_pred eecceeehhhhhhhHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhheeeccCchhhhhhhcceeEEEecCccccchhhH
Confidence 578999995 8888877776667777777654 467899999999999999988888999999999999999988887
Q ss_pred HHHHHHHHHHHHHHHhhhcccCCccchHHHHhhHHHHHHHHHHhhcCCcChHHHHhcCCHHHHHHHHHHhcChhhhHHHH
Q 014616 87 NVLMITSGQFLSYLVNLAFTEVPGTWRWMLGVSAVPAIIQFVLMLFMPESPRWLFMKSDKEKAILVLSKIYDIARLEDEI 166 (421)
Q Consensus 87 ~~~~~~~g~~l~~~~~~~~~~~~~~Wr~~f~~~~~~~l~~~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (421)
.....-.|...-..+...+.+..+ -++=.... ..+-.+.+-|...... .-.....+... ++..
T Consensus 177 qlSvAR~GstvNf~lm~~ly~~~~----~~~~~~gh---T~LG~~l~~~~~tc~~----slical~lg~~------D~rA 239 (459)
T KOG4686|consen 177 QLSVARLGSTVNFLLMPFLYDTMG----RMFPGVGH---TLLGLWLCFEVKTCKQ----SLICALSLGLS------DDRA 239 (459)
T ss_pred HHHHHHhhceeeeeecHHHHHHHH----HhcccchH---HHHHHHHHHHHHHHHH----HHHHHHHhhhh------hhHH
Confidence 766666665432222111100000 00000000 0111111111100000 00000000000 0000
Q ss_pred HHHHHHHHHHHhhc-ccccHHHhhcchhHHHHHHHHHHHHHHHhhcCcceehhchHHHHH-HcCCCChHHHHHHHHHHHH
Q 014616 167 DHLSAAAEEELRKK-KTVRYLDVFKSKEIRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQ-MAGFQSNQLALLLSLAVAG 244 (421)
Q Consensus 167 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~ 244 (421)
+...+ .++....+ ++.....-++ |.+|...+.... +....+.+. -..|.+++ .+|+++...+...+....+
T Consensus 240 erilh-~e~g~~Ge~pkLtdv~~f~-ppfw~~~iicv~--yyva~fPFi---~lg~~fF~~rfGlS~~~a~~i~s~vy~I 312 (459)
T KOG4686|consen 240 ERILH-LEEGFLGEEPKLTDVNTFY-PPFWVLVIICVL--YYVAWFPFI---TLGPMFFQKRFGLSAVSAGNILSTVYGI 312 (459)
T ss_pred HHHHh-hhcCcccCCcccccccccC-ccHHHHHHHHHH--HHHHHHHHh---hhhHHHHHHhhCCChhhccchhhhhhhh
Confidence 00000 00000000 1111111122 344544333222 222222222 23455554 5799988877777777765
Q ss_pred HHHHHHHHHHHHHhhcCChhHHHHhhHHHHHHHHHHHHHHhhCCCCCCCcchhHHHHHHHHHHHHHhhcccccccceecc
Q 014616 245 TNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLALYIAFFAPGMGPVPWTLNS 324 (421)
Q Consensus 245 ~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 324 (421)
.++.+++.|.++||+|++...+.+. ....+.......-. ....+..+..+++.....+... |..++
T Consensus 313 -sav~spvfg~i~Dk~G~n~~wv~~a----~~~tl~~H~~l~Ft-----~lsPy~~m~~lGLsysllAcsl----WP~va 378 (459)
T KOG4686|consen 313 -SAVLSPVFGAISDKYGFNLWWVASA----CILTLLGHSGLFFT-----FLSPYTSMTFLGLSYSLLACSL----WPCVA 378 (459)
T ss_pred -hhhhhhhHHHhHhhhcceehhHHHH----HHHHHHHhhhHHhh-----hccHHHHHHHHhhhHHHHHHHH----hhhhh
Confidence 5778888899999999986644322 12222222111100 1122444444444333323223 44567
Q ss_pred ccCccchhhhhhHHHHHHHHHHHHHHHHHhHHHHHHcCc-c---hhhHHHHHHHHHHHHHHHh
Q 014616 325 EVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELVGT-G---ATFLILAGIAVLAVVFVIL 383 (421)
Q Consensus 325 e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~-~---~~~~~~~~~~~~~~~~~~~ 383 (421)
.+.|.++-|++.|..+++++++-.+.+.+.+.+.+..|- . ..|...+..++....+.+.
T Consensus 379 ~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~g~y~~le~ffl~~~~~aL~svgil~~ 441 (459)
T KOG4686|consen 379 SLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADGDGSYDNLEAFFLIIGLMALTSVGILFY 441 (459)
T ss_pred hhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeecCCCchhhHHHHHHHHHHHHHHHHHHHhh
Confidence 788999999999999999999988888888877776552 1 2344444444444444433
|
|
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.42 E-value=5.5e-11 Score=111.48 Aligned_cols=121 Identities=23% Similarity=0.458 Sum_probs=99.7
Q ss_pred HHhhhhhhhcc-cchhHHHHHHHHHHHHHHHHHHhcC--ChhHHHHHHHHHHhhhhhhhhhHHHHHhhcCCCCC--ccch
Q 014616 9 GAASGGWINDA-YGRKKATLLADVVFTAGAIIMAAAP--DPYVLILGRLLVGLGVGIASVTAPVYIAEASPSEV--RGGL 83 (421)
Q Consensus 9 g~~~~g~l~dr-~Grr~~~~~~~~l~~i~~~~~~~~~--s~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~--rg~~ 83 (421)
...++||++|| .|+|+.+..+.+++++|-++.+.++ ++..+.++-.+.++|.|..=+....++.|..|+++ |...
T Consensus 77 t~i~GG~laDr~LG~~~tI~lGail~~iGh~~L~~~~~~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~DprrD~g 156 (498)
T COG3104 77 TPIIGGWLADRVLGTRRTIVLGAILMAIGHLVLAISSVSGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDPRRDGG 156 (498)
T ss_pred HHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHhccccccccHHHHHHHhcCCCCcccCCC
Confidence 45689999998 8999999999999999999999884 78889999999999999999999999999998754 4444
Q ss_pred hchHHHHHHHHHHHHHHHhhhcccCCccchHHHHhhHHHHHHHHHHh
Q 014616 84 VSTNVLMITSGQFLSYLVNLAFTEVPGTWRWMLGVSAVPAIIQFVLM 130 (421)
Q Consensus 84 ~~~~~~~~~~g~~l~~~~~~~~~~~~~~Wr~~f~~~~~~~l~~~~~~ 130 (421)
.+..-.+.++|.++++.+...+.+..+ |...|.+.++-..+.++..
T Consensus 157 Ft~fY~~iNiGsl~~p~i~~~~~~~~g-~~~gF~~aavGm~~gl~~f 202 (498)
T COG3104 157 FTLFYMGINIGSLIAPIITGLLAINYG-WHVGFGLAAVGMIIGLVIF 202 (498)
T ss_pred ccEEEEEeehHHHHHHHHHHHHHHhhC-HHHHHHHHHHHHHHHHHHH
Confidence 555555677888888888877766654 9999998887666555443
|
|
| >KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.40 E-value=3.8e-11 Score=110.69 Aligned_cols=344 Identities=16% Similarity=0.162 Sum_probs=188.8
Q ss_pred hhhHHHHhhhhhhhcccchhHHHHHHHHHHHHHHHHHHhcCCh------h--HHHHHHHHHHhhhhhhhhhHHHHHhhcC
Q 014616 4 VGAIVGAASGGWINDAYGRKKATLLADVVFTAGAIIMAAAPDP------Y--VLILGRLLVGLGVGIASVTAPVYIAEAS 75 (421)
Q Consensus 4 ig~~~g~~~~g~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~s~------~--~l~~~R~l~G~g~g~~~~~~~~~i~e~~ 75 (421)
+-++.-.+.+-|+.|++|-|....++..+-.+++.+-..+... + ....+..+.+.+.-........+..-|+
T Consensus 90 ~v~vp~gf~~mw~ldk~GLR~a~llgt~ln~iGa~Ir~iss~p~v~~~f~~~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF 169 (480)
T KOG2563|consen 90 VVSVPFGFAAMWILDKFGLRTALLLGTVLNGIGAWIRLISSLPFVPPLFRRPLTHTGQSIAAAAQPFILGLPSKIAAVWF 169 (480)
T ss_pred HHHHHHhhHHHHhhcccchHHHHHHHHHHHHHHHHHhhhccCccccccchhhhhHHhHHHHHHhhhHhhccccHHHHhhC
Confidence 3344445788999999999999999999999999986655433 3 4556777777777776766677788899
Q ss_pred CCCCccchhchHHHHHHHHHHHHHHHhhhcccCC-----ccchH--HHHhhHHHHHHHHHH-hhcCCcChHHHHhcCCHH
Q 014616 76 PSEVRGGLVSTNVLMITSGQFLSYLVNLAFTEVP-----GTWRW--MLGVSAVPAIIQFVL-MLFMPESPRWLFMKSDKE 147 (421)
Q Consensus 76 p~~~rg~~~~~~~~~~~~g~~l~~~~~~~~~~~~-----~~Wr~--~f~~~~~~~l~~~~~-~~~~~esp~~~~~~~~~~ 147 (421)
|+++|..+......+-.+|..++.++...+.... ..|-. .|+.....+.+.++. ....+|.|+.- +...
T Consensus 170 ~~~qra~A~~~~v~~n~LGvavg~llppilV~~~~~~~~~~~~~~~~f~~~~~l~~l~l~l~~~~~~~~P~tP---ps~s 246 (480)
T KOG2563|consen 170 PPDQRAIATVLGVMGNPLGVAVGFLLPPILVPSSKDSEDNSWLFFTLFLGVECLAALLLALVLFVFTKKPPTP---PSAS 246 (480)
T ss_pred CcchhhhhhhHHHhcchHHHHHHhhccceecCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCC---Cchh
Confidence 9999987766655555566666666665554332 23644 344444444333332 23334433210 0000
Q ss_pred HHHHHHHHhcChhhhHHHHHHHHHHHHHHHhhcccccHHHhhcchhHHHHHHHHHHHHHHHhhcCcceehhchHHHHHHc
Q 014616 148 KAILVLSKIYDIARLEDEIDHLSAAAEEELRKKKTVRYLDVFKSKEIRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQMA 227 (421)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (421)
+....+..-..+.++.++|+++....++...- +..++.....+...+...
T Consensus 247 -------------------------~~~~~~~~f~~si~~~~~n~~F~il~~~ygi~-----~g~F~~l~~~l~~~l~~s 296 (480)
T KOG2563|consen 247 -------------------------QAALQDASFPKSIKSCFKNRQFIILAICYGIG-----LGLFNSLSTLLNLALCPS 296 (480)
T ss_pred -------------------------HhhhhcCcHHHHHHHHHcCccHHHHHHHHhhh-----HHHHHHHHHHhhhccccc
Confidence 00000011123456788898876544432211 111111111111111223
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHH-HHhhHHHHHHHHHHHHHHhhCCCCCCCcchhHHHHHHHHH
Q 014616 228 GFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLA-LSSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLAL 306 (421)
Q Consensus 228 g~~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~grr~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (421)
|++.. .+++......+.+.+++.+.|.+.||....+.. +.......++. +.......... +.++...- ..
T Consensus 297 gY~~~-~aG~ig~l~iv~Gmlga~~~gii~Dktk~fk~~~~v~~~~~~v~~--~~l~~~t~~~~-----~~viv~~t-~~ 367 (480)
T KOG2563|consen 297 GYEGV-FAGYIGALMIVAGMLGALASGIIADKTKKFKLTTLVLYLFALVGT--LMLLTCTLFLG-----DSVIVFTT-CG 367 (480)
T ss_pred cCCcc-ccchhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHH--HHHHHhhccCC-----ceEehhhh-HH
Confidence 44432 334444445556789999999999998764432 22222222221 11111111111 11111111 11
Q ss_pred HHHHhhcccccccceeccccCccchhhhhhHHHHHHHHHHHHHHHHHhHHHHHHcC----cchhhHHHHHHHHHHHHHHH
Q 014616 307 YIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELVG----TGATFLILAGIAVLAVVFVI 382 (421)
Q Consensus 307 ~~~~~~~g~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g----~~~~~~~~~~~~~~~~~~~~ 382 (421)
...++..+-.|+..-+..|..=|..-++.+|.-+..+++-+++-.+......+..+ +...-+++...++....+..
T Consensus 368 ~~g~~~~~~~Pig~ElgvE~TyPv~E~tSsGll~~~gq~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~lva 447 (480)
T KOG2563|consen 368 LLGFFGTGYLPIGFELGVETTYPVAEGTSSGLLNLSGQIFGVILVFIMGILAEDLGPPGNTFPANIFLTVSALLGAILVA 447 (480)
T ss_pred HHHHhhcCCCCcceeeeeeeccccCCcccceeEEeehhHHHHHHHHHHHHHhhccCCCCCCccchhHhHHHHHHHHHHHh
Confidence 22345566678888888887656666677788888887777776666666666554 33334555555666666666
Q ss_pred hhccCCC
Q 014616 383 LFVPETQ 389 (421)
Q Consensus 383 ~~~~et~ 389 (421)
++.|+-|
T Consensus 448 ~~r~~y~ 454 (480)
T KOG2563|consen 448 FFRPDYR 454 (480)
T ss_pred hhhhhHH
Confidence 6545443
|
|
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=99.36 E-value=2.5e-11 Score=116.04 Aligned_cols=163 Identities=21% Similarity=0.215 Sum_probs=114.0
Q ss_pred eehhchHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHhhHHHHHHHHHHHHHHhhCCCCCCCc
Q 014616 215 TVMYYSPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSG 294 (421)
Q Consensus 215 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 294 (421)
...++.|.+.++.|.+..+.+....... ....++.++.|+++||+|||+.+..+.....++.++.... .+
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~------~~--- 104 (398)
T TIGR00895 35 AMGFAAPAISAEWGLDPVQLGFLFSAGL-IGMAFGALFFGPLADRIGRKRVLLWSILLFSVFTLLCALA------TN--- 104 (398)
T ss_pred HHHhhHHHHhhccCCCHHHHHHHHHHHH-HHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHc------cc---
Confidence 3445678888888988777776665544 4468899999999999999998877665555444433221 00
Q ss_pred chhHHHHHHHHHHHHHhhcccccccceeccccCccchhhhhhHHHHHHHHHHHHHHHHHhHHHHHHcCcchhhHHHHHHH
Q 014616 295 VYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELVGTGATFLILAGIA 374 (421)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 374 (421)
. +..... .....+......+...++..|.+|++.|+.+.++.+....++..+++...+.+.+..+|...+++.+...
T Consensus 105 -~-~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~ 181 (398)
T TIGR00895 105 -V-TQLLIL-RFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGWRSLFYVGGIAP 181 (398)
T ss_pred -h-HHHHHH-HHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhhcccceeehhhhhhHH
Confidence 1 111111 1222222233446667788999999999999999999999999999988888888888888888887666
Q ss_pred HHHHHHHHhhccCCCC
Q 014616 375 VLAVVFVILFVPETQG 390 (421)
Q Consensus 375 ~~~~~~~~~~~~et~~ 390 (421)
.+.........||+++
T Consensus 182 ~~~~~~~~~~~~~~~~ 197 (398)
T TIGR00895 182 LLLLLLLMRFLPESID 197 (398)
T ss_pred HHHHHHHHHhCCCCCh
Confidence 6666666666777643
|
|
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=99.36 E-value=3.7e-11 Score=115.66 Aligned_cols=166 Identities=12% Similarity=0.079 Sum_probs=113.5
Q ss_pred cceehhchHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHhhHHHHHHHHHHHHHHhhCCCCCC
Q 014616 213 INTVMYYSPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASS 292 (421)
Q Consensus 213 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 292 (421)
.....+..|.+.++.|.+..+.+...+....+ ..++.+..|++.||+|||+.+..+.....++..+.... .+.
T Consensus 24 ~~~~~~~~~~l~~~~~~s~~~~g~~~s~~~~~-~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~------~~~ 96 (412)
T TIGR02332 24 RINIGFAGLTMGKDLGLSATMFGLAATLFYAA-YVICGIPSNIMLAIIGARRWIAGIMVLWGIASTATMFA------TGP 96 (412)
T ss_pred hhhHHHHHHhhHhhcCCCHHHHHHHHHHHHHH-HHHHHhhHHHHHHHhChHHHHHHHHHHHHHHHHHHHHh------cCH
Confidence 33444556777788899988887777665544 67888999999999999998877666655555444331 111
Q ss_pred CcchhHHHHHHHHHHHHHhhcccccccceeccccCccchhhhhhHHHHHHHHHHHHHHHHHhHHHHH------HcCcchh
Q 014616 293 SGVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAE------LVGTGAT 366 (421)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~g~~~~ 366 (421)
. .. ...-+...+...+..+....+..|.+|++.|+.+.++.++...++..+++.+.+.+.+ ..||++.
T Consensus 97 ~----~l--~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~gwr~~ 170 (412)
T TIGR02332 97 E----SL--YLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILALDGLMALKGWQWL 170 (412)
T ss_pred H----HH--HHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccchhHH
Confidence 0 11 1111111122222335555677999999999999999999988988888877766654 3588899
Q ss_pred hHHHHHHHHHHHHHHHhhccCCCCC
Q 014616 367 FLILAGIAVLAVVFVILFVPETQGL 391 (421)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~et~~~ 391 (421)
|.+.+...++...+.+++.||++++
T Consensus 171 f~~~~~~~l~~~~~~~~~~~~~p~~ 195 (412)
T TIGR02332 171 FLLEGFPSVILGVMTWFWLDDSPDK 195 (412)
T ss_pred HHHHHHHHHHHHHHHhhccCCCccc
Confidence 9988888777666666777888643
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=99.34 E-value=6e-12 Score=127.41 Aligned_cols=132 Identities=16% Similarity=0.094 Sum_probs=114.2
Q ss_pred hhhHHHHhhhhhhhcccchhHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHhhhhhhhhhHHHHHhhcCCCCCccch
Q 014616 4 VGAIVGAASGGWINDAYGRKKATLLADVVFTAGAIIMAAAPDPYVLILGRLLVGLGVGIASVTAPVYIAEASPSEVRGGL 83 (421)
Q Consensus 4 ig~~~g~~~~g~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~s~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg~~ 83 (421)
++.++|.++.|+++||+|||+++.++.++.++++++.++.++...+++.+++.|++.++..+...++++|++|.++|+..
T Consensus 606 l~~i~G~il~g~L~Dr~GRr~~l~~~~~lsai~~ll~~~~~s~~~ll~~~~l~g~~~~~~~~~~~a~~aEl~Pt~~Rgta 685 (742)
T TIGR01299 606 LAVLPGNIVSALLMDKIGRLRMLAGSMVLSCISCFFLSFGNSESAMIALLCLFGGLSIAAWNALDVLTVELYPSDKRATA 685 (742)
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHH
Confidence 67789999999999999999999999999999999999999988899999999999988999999999999999999999
Q ss_pred hchHHHHHHHHHHHHHHHhhhcccCCccchHHHHhhHHHHHHHHHHhhcCCcCh
Q 014616 84 VSTNVLMITSGQFLSYLVNLAFTEVPGTWRWMLGVSAVPAIIQFVLMLFMPESP 137 (421)
Q Consensus 84 ~~~~~~~~~~g~~l~~~~~~~~~~~~~~Wr~~f~~~~~~~l~~~~~~~~~~esp 137 (421)
.+.......+|.++++.++..+... ..+.+|++.++..++..++..++||+.
T Consensus 686 ~Gi~~~~~rlGaiigp~i~g~L~~~--~~~~pf~i~a~~lll~~ll~~~LPET~ 737 (742)
T TIGR01299 686 FGFLNALCKAAAVLGILIFGSFVGI--TKAAPILFASAALACGGLLALKLPDTR 737 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh--hhHHHHHHHHHHHHHHHHHHHhCCCCc
Confidence 9999999999999999887654332 245677777776666666666778874
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=99.34 E-value=2.4e-11 Score=115.84 Aligned_cols=161 Identities=16% Similarity=0.150 Sum_probs=113.9
Q ss_pred hchHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHhhHHHHHHHHHHHHHHhhCCCCCCCcchh
Q 014616 218 YYSPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYG 297 (421)
Q Consensus 218 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 297 (421)
...|.+.++.|.+..+.+........ ...++.++.|+++||+|||+.+..+.....++..+..... + .
T Consensus 15 ~~~~~~~~~~g~s~~~~~~~~~~~~~-~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~------~----~- 82 (399)
T TIGR00893 15 FAAPMLQEDLGLSAAQYGYVFSAFSW-GYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFAG------A----Y- 82 (399)
T ss_pred HhHHHHHHhhCCChhhHHHHHHHHHH-HHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHHHc------C----H-
Confidence 45677778889988887776666554 4788999999999999999988766655555544443320 0 1
Q ss_pred HHHHHHHHHHHHHhhcccccccceeccccCccchhhhhhHHHHHHHHHHHHHHHHHhHHHHHHcCcchhhHHHHHHHHHH
Q 014616 298 WIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELVGTGATFLILAGIAVLA 377 (421)
Q Consensus 298 ~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 377 (421)
+...... ....+......+....+..|.+|++.|+...+..+....++..+++.+.+.+.+..+|.+.|.+.+...++.
T Consensus 83 ~~~~~~~-~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 161 (399)
T TIGR00893 83 VSLYILR-VLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIHFSWQWAFIIEGVLGIIW 161 (399)
T ss_pred HHHHHHH-HHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHH
Confidence 1111111 111222223445666788999999999999999999999999999888888888889988888888877776
Q ss_pred HHHHHhhccCCCCC
Q 014616 378 VVFVILFVPETQGL 391 (421)
Q Consensus 378 ~~~~~~~~~et~~~ 391 (421)
.+..++..||++.+
T Consensus 162 ~~~~~~~~~~~~~~ 175 (399)
T TIGR00893 162 GVLWLKFIPDPPQK 175 (399)
T ss_pred HHHhhheecCCCCc
Confidence 66666666666543
|
|
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.6e-10 Score=112.12 Aligned_cols=161 Identities=19% Similarity=0.170 Sum_probs=111.2
Q ss_pred ehhchHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHhhHHHHHHHHHHHHHHhhCCCCCCCcc
Q 014616 216 VMYYSPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGV 295 (421)
Q Consensus 216 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 295 (421)
...+.|.+.++.|.+..+.+...+.... ...++.++.|++.||+|||+.+..+.....++..+..+.- .
T Consensus 42 ~~~~~~~~~~~~g~s~~~~g~~~~~~~~-~~~~~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~----------~ 110 (434)
T PRK11663 42 FNAAMPEMLADLGLSRSDIGLLATLFYI-TYGVSKFVSGIVSDRSNARYFMGIGLIATGIINILFGFSS----------S 110 (434)
T ss_pred HHHhhHHHHHhcCCCHHHHHHHHHHHHH-HHHHHHhhhhHHHhhcCCchhHHHHHHHHHHHHHHHHHHh----------H
Confidence 3456788888899988877776665544 4688999999999999999988776666555554443310 0
Q ss_pred hhHHHHHHHHHHHHHhhcccccccceeccccCccchhhhhhHHHHHHHHHHHHHHHHHhHHHHHHcCcchhhHHHHHHHH
Q 014616 296 YGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELVGTGATFLILAGIAV 375 (421)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 375 (421)
+ +.......+ ..+......+...++..|.+|+++|+++.++.++...++..+++.+.+.+.+..+|++.|.+.+.+.+
T Consensus 111 ~-~~l~~~~~l-~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~f~~~~i~~~ 188 (434)
T PRK11663 111 L-WAFALLWVL-NAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIALHYGWRYGMMIAGIIAI 188 (434)
T ss_pred H-HHHHHHHHH-HHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 1 111111111 11111122345567778999999999999999999999999999888888888899988888877766
Q ss_pred HHHHHHHhhccCCC
Q 014616 376 LAVVFVILFVPETQ 389 (421)
Q Consensus 376 ~~~~~~~~~~~et~ 389 (421)
+..+...+..||++
T Consensus 189 ~~~~~~~~~~~~~p 202 (434)
T PRK11663 189 VVGLFLCWRLRDKP 202 (434)
T ss_pred HHHHHHHHHcCCCH
Confidence 55554445556653
|
|
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=5.3e-10 Score=106.91 Aligned_cols=158 Identities=21% Similarity=0.218 Sum_probs=109.5
Q ss_pred chHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHhhHHHHHHHHHHHHHHhhCCCCCCCcchhH
Q 014616 219 YSPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGW 298 (421)
Q Consensus 219 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 298 (421)
..|.+.++.|.+..+.+...+....+ ..++.+..|++.||+|||+.+..+.....++.+..... .+ + +
T Consensus 31 ~~~~l~~~~~~s~~~~g~~~~~~~~~-~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~------~~----~-~ 98 (390)
T PRK03545 31 LLSDIAQSFHMQTAQVGLMLTIYAWV-VALMSLPLMLLTSNVERRKLLIGLFVLFIASHVLSALA------WN----F-T 98 (390)
T ss_pred chHHHHhHcCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHh------cc----H-H
Confidence 45778888999988887776665444 56778888999999999999887766555554443321 00 1 1
Q ss_pred HHHHHHHHHHHHhhcccccccceeccccCccchhhhhhHHHHHHHHHHHHHHHHHhHHHHHHcCcchhhHHHHHHHHHHH
Q 014616 299 IAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELVGTGATFLILAGIAVLAV 378 (421)
Q Consensus 299 ~~~~~~~~~~~~~~~g~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 378 (421)
.....- +..........+...++..|.+|++.|+++.|+..+...++..+++.+...+.+..||++.|++.+...++..
T Consensus 99 ~l~~~r-~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~~~~l~~ 177 (390)
T PRK03545 99 VLLISR-IGIAFAHAIFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQYLGWRTTFLAIGGGALITL 177 (390)
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhcHHHHHHHHHHHHHHHH
Confidence 111111 1111111122345556778999999999999999999999999998888888888899999999888777666
Q ss_pred HHHHhhccCCC
Q 014616 379 VFVILFVPETQ 389 (421)
Q Consensus 379 ~~~~~~~~et~ 389 (421)
.......||.+
T Consensus 178 ~~~~~~~~~~~ 188 (390)
T PRK03545 178 LLLIKLLPLLP 188 (390)
T ss_pred HHHHHhCCCCC
Confidence 55555556543
|
|
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=99.22 E-value=6.8e-11 Score=112.20 Aligned_cols=160 Identities=16% Similarity=0.165 Sum_probs=111.3
Q ss_pred hchHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHhhHHHHHHHHHHHHHHhhCCCCCCCcchh
Q 014616 218 YYSPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYG 297 (421)
Q Consensus 218 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 297 (421)
...|.+.++.|.+..+.+...+.... ...++.++.|+++||+|||+.+..+.....++.++..+.. + +
T Consensus 16 ~~~~~~~~~~g~s~~~~g~~~~~~~~-~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~------~----~- 83 (379)
T TIGR00881 16 LAMPYLVEEIGLSKTDLGLLLSSFSI-AYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFST------S----L- 83 (379)
T ss_pred hhhHHHHHHhCCCHhHHHHHHHHHHH-HHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHhh------h----H-
Confidence 45677778889988887776666554 4788999999999999999988877666655555443321 0 1
Q ss_pred HHHHHHHHHHHHHhhcccccccceeccccCccchhhhhhHHHHHHHHHHHHHHHH-HhHHHHHHcCcchhhHHHHHHHHH
Q 014616 298 WIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQ-TFLTVAELVGTGATFLILAGIAVL 376 (421)
Q Consensus 298 ~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~ 376 (421)
+..... .+...+......+...++..|.+|++.|+.+.++.+....++..+++. ......+..+|...|++.+.+.++
T Consensus 84 ~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (379)
T TIGR00881 84 WVMAAL-WALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAELYSWHWVFIVPGIIAII 162 (379)
T ss_pred HHHHHH-HHHHHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHH
Confidence 111121 122222233345666778899999999999999999999999888884 445555667888888888877777
Q ss_pred HHHHHHhhccCCCC
Q 014616 377 AVVFVILFVPETQG 390 (421)
Q Consensus 377 ~~~~~~~~~~et~~ 390 (421)
..++.+++.||++.
T Consensus 163 ~~~~~~~~~~~~~~ 176 (379)
T TIGR00881 163 VSLICFLLLRDSPQ 176 (379)
T ss_pred HHHHHheeeCCCcc
Confidence 66666666666543
|
|
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=99.22 E-value=4.2e-10 Score=107.91 Aligned_cols=162 Identities=19% Similarity=0.213 Sum_probs=105.2
Q ss_pred eehhchHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHhhHHHHHHHHHHHHHHhhCCCCCCCc
Q 014616 215 TVMYYSPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSG 294 (421)
Q Consensus 215 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 294 (421)
......|.+.++.|.+..+.+...+.... ...++.++.|+++||+|||+.+..+.....++....... .+
T Consensus 30 ~~~~~~~~l~~~~~~s~~~~g~~~~~~~~-~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~------~~--- 99 (405)
T TIGR00891 30 LVALVLAEVAGEFGLTTVDAASLISAALI-SRWFGALMFGLWGDRYGRRLPMVTSIVLFSAGTLACGFA------PG--- 99 (405)
T ss_pred HHHHHHHHHHHHhCCChhhHHHHHHHHHH-HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHh------cc---
Confidence 33445677778889988887777666554 478899999999999999998876665555444433221 00
Q ss_pred chhHHHHHHHHHHHHHhhcccccccceeccccCccchhhhhhHHHHHHHHHHHHHHHHHhHHHHHHcC--cchhhHHHHH
Q 014616 295 VYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELVG--TGATFLILAG 372 (421)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g--~~~~~~~~~~ 372 (421)
+ +.... ..+..........+...++..|.+|++.|+.+.++.++...+|..+++.....+.+..+ |...|.+.+.
T Consensus 100 -~-~~l~~-~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~w~~~f~~~~~ 176 (405)
T TIGR00891 100 -Y-ITMFI-ARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVPVWGDGWRALFFISIL 176 (405)
T ss_pred -H-HHHHH-HHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHH
Confidence 1 11111 11111122222334556678899999999999999999999999888888777777665 6666665444
Q ss_pred HHHHHHHHHHhhccCCCC
Q 014616 373 IAVLAVVFVILFVPETQG 390 (421)
Q Consensus 373 ~~~~~~~~~~~~~~et~~ 390 (421)
..++. .......||++.
T Consensus 177 ~~~~~-~~~~~~~~~~~~ 193 (405)
T TIGR00891 177 PIIFA-LWLRKNIPEAED 193 (405)
T ss_pred HHHHH-HHHHHhCCCChh
Confidence 33333 333445677654
|
|
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.8e-10 Score=105.69 Aligned_cols=159 Identities=16% Similarity=0.114 Sum_probs=119.6
Q ss_pred hhchHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHhhHHHHHHHHHHHHHHhhCCCCCCCcch
Q 014616 217 MYYSPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVY 296 (421)
Q Consensus 217 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 296 (421)
..-.|.+.++.+++-.+.+.+.+..+.. ..++-.+.|.++||.+.|+.+..++....++.+++++.-
T Consensus 49 ~~a~p~l~e~~~lsk~~lG~i~s~f~i~-YG~sKf~~G~~sDr~npr~fm~~gLilsai~nil~Gfs~------------ 115 (448)
T COG2271 49 NLAMPALIEDGGLSKTQLGILGSAFSIT-YGVSKFVMGVLSDRSNPRYFMAFGLILSAIVNILFGFSP------------ 115 (448)
T ss_pred hhccHHHHHhcCCCHHHHHHHHHHHHHH-HHHHHHHhhhhcccCCCceeehHHHHHHHHHHHHHhhhh------------
Confidence 3456888888889988988887776654 789999999999999999988877777777766665421
Q ss_pred hHHHHHHHHHHHHHhhcccccccceeccccCccchhhhhhHHHHHHHHHHHHHHHHHh--HHHHHHcCcchhhHHHHHHH
Q 014616 297 GWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTF--LTVAELVGTGATFLILAGIA 374 (421)
Q Consensus 297 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~--~~~~~~~g~~~~~~~~~~~~ 374 (421)
.......+.....++...-+|...-..+.-+|.+.||+..++.|+..++|+.+.+.+. .......+|...|++-++++
T Consensus 116 s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~la~~~~~~~w~~~f~~pgiia 195 (448)
T COG2271 116 SLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVALLAFFAFHGGWRAAFYFPGIIA 195 (448)
T ss_pred HHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccccCceEEEehhhhhcccchHHHHHHHHHHHhccchhHHHHHHHHHH
Confidence 1112222222333333333466666778899999999999999999999999988887 77777778999999999999
Q ss_pred HHHHHHHHhhccCC
Q 014616 375 VLAVVFVILFVPET 388 (421)
Q Consensus 375 ~~~~~~~~~~~~et 388 (421)
++..+.+++..++|
T Consensus 196 iival~~~~~~rd~ 209 (448)
T COG2271 196 IIVALILLFLLRDR 209 (448)
T ss_pred HHHHHHHHHHhCCC
Confidence 98888777766444
|
|
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=99.21 E-value=4.9e-10 Score=106.76 Aligned_cols=161 Identities=17% Similarity=0.145 Sum_probs=112.3
Q ss_pred chHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHhhHHHHHHHHHHHHHHhhCCCCCCCcchhH
Q 014616 219 YSPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGW 298 (421)
Q Consensus 219 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 298 (421)
..|.+.++.|.+..+.+........ ...++.++.|++.||+|||+.+..+.....++....... . + . +
T Consensus 27 ~~p~~~~~~g~s~~~~g~~~~~~~~-~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~---~---~----~-~ 94 (385)
T TIGR00710 27 AFPEIAADLSTPASIVQMTLTLYLL-GFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLALS---N---N----I-E 94 (385)
T ss_pred cHHHHHHHhCCCHHHHHHHHHHHHH-HHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHH---c---c----H-H
Confidence 4577778889988887777666554 478899999999999999998877665555554443321 0 0 1 1
Q ss_pred HHHHHHHHHHHHhhcccccccceeccccCccchhhhhhHHHHHHHHHHHHHHHHHhHHHHHHcCcchhhHHHHHHHHHHH
Q 014616 299 IAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELVGTGATFLILAGIAVLAV 378 (421)
Q Consensus 299 ~~~~~~~~~~~~~~~g~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 378 (421)
..... .+...+......+...++..|.+|++.|++..+..+....++..+++...+.+.+..+|...+++.+...++..
T Consensus 95 ~~~~~-~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 173 (385)
T TIGR00710 95 TLLVL-RFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVWLSWHAIFAFLSLAGILLS 173 (385)
T ss_pred HHHHH-HHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHH
Confidence 11111 11111212222345567788999999999999999999999999998888888888888888888887777766
Q ss_pred HHHHhhccCCCCCC
Q 014616 379 VFVILFVPETQGLT 392 (421)
Q Consensus 379 ~~~~~~~~et~~~~ 392 (421)
+..++..||+++++
T Consensus 174 ~~~~~~~~~~~~~~ 187 (385)
T TIGR00710 174 ALIFFILPETLPYE 187 (385)
T ss_pred HHHHHhCCCCCCCc
Confidence 66666677765543
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.1e-09 Score=104.87 Aligned_cols=158 Identities=16% Similarity=0.162 Sum_probs=109.4
Q ss_pred chHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHhhHHHHHHHHHHHHHHhhCCCCCCCcchhH
Q 014616 219 YSPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGW 298 (421)
Q Consensus 219 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 298 (421)
..|.+.++.|.+..+.+........+ ..++.++.|++.||+|||+.+..+.....++.+..... .+ + +
T Consensus 42 ~l~~~~~~~g~s~~~~g~~~~~~~~~-~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~------~~----~-~ 109 (394)
T PRK10213 42 LLTPMAQDLGISEGVAGQSVTVTAFV-AMFASLFITQTIQATDRRYVVILFAVLLTLSCLLVSFA------NS----F-S 109 (394)
T ss_pred hHHHHHHHcCCCHHHHHHHHHHHHHH-HHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHH------Ch----H-H
Confidence 35667788899888877766555444 67888999999999999999887776666554443221 00 1 1
Q ss_pred HHHHHHHHHHHHhhcccccccceeccccCccchhhhhhHHHHHHHHHHHHHHHHHhHHHHHHcCcchhhHHHHHHHHHHH
Q 014616 299 IAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELVGTGATFLILAGIAVLAV 378 (421)
Q Consensus 299 ~~~~~~~~~~~~~~~g~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 378 (421)
..... -....+......+...++..|.+|+++|+.+.+...+...++..+++.+.+.+.+..+|.+.|++.+.+.++..
T Consensus 110 ~l~~~-r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~l~~~~~ 188 (394)
T PRK10213 110 LLLIG-RACLGLALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGELIGWRNVFNAAAVMGVLCI 188 (394)
T ss_pred HHHHH-HHHHHHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHH
Confidence 11111 11111112223355567778999999999999999999999999999998888888899988888877666555
Q ss_pred HHHHhhccCCC
Q 014616 379 VFVILFVPETQ 389 (421)
Q Consensus 379 ~~~~~~~~et~ 389 (421)
+......||++
T Consensus 189 l~~~~~~p~~~ 199 (394)
T PRK10213 189 FWIIKSLPSLP 199 (394)
T ss_pred HHHHHHCCCCC
Confidence 44444567754
|
|
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=4e-10 Score=108.32 Aligned_cols=160 Identities=18% Similarity=0.151 Sum_probs=107.2
Q ss_pred hhchHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHhhHHHHHHHHHHHHHHhhCCCCCCCcch
Q 014616 217 MYYSPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVY 296 (421)
Q Consensus 217 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 296 (421)
....|.+.++.|.+..+.+........ ...++.++.|+++||+|||+.+..+.....++.+..... .+ .
T Consensus 35 ~~~~~~~~~~~~~s~~~~g~~~~~~~~-~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~------~~----~ 103 (406)
T PRK11551 35 GVAAPRMAQEFGLDVAQMGWAFSAGIL-GLLPGALLGGRLADRIGRKRILIVSVALFGLFSLATAQA------WD----F 103 (406)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHh------cc----H
Confidence 345677788889988887777666554 468899999999999999999877665544444332221 10 1
Q ss_pred hHHHHHHHHHHHHHhhcccccccceeccccCccchhhhhhHHHHHHHHHHHHHHHHHhHHHHHHcCcchhhHHHHHHHHH
Q 014616 297 GWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELVGTGATFLILAGIAVL 376 (421)
Q Consensus 297 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 376 (421)
+...... +...+......+...++..|.+|++.|+.+.++.+....++..+++.....+.+..+|...|++.+...++
T Consensus 104 -~~~~~~~-~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (406)
T PRK11551 104 -PSLLVAR-LLTGVGLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLAAGDAAWRHIFYVGGVGPLL 181 (406)
T ss_pred -HHHHHHH-HHHHhhHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHHHHHHHH
Confidence 1111111 11112222233555677899999999999999999988888888877766666667787788877766665
Q ss_pred HHHHHHhhccCCC
Q 014616 377 AVVFVILFVPETQ 389 (421)
Q Consensus 377 ~~~~~~~~~~et~ 389 (421)
.......+.||++
T Consensus 182 ~~~~~~~~l~~~~ 194 (406)
T PRK11551 182 LVPLLMRWLPESR 194 (406)
T ss_pred HHHHHHHhCCCCh
Confidence 5555556667764
|
|
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=1e-09 Score=105.06 Aligned_cols=157 Identities=11% Similarity=0.105 Sum_probs=104.0
Q ss_pred chHHHH-HHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHhhHHHHHHHHHHHHHHhhCCCCCCCcchh
Q 014616 219 YSPTIV-QMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYG 297 (421)
Q Consensus 219 ~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 297 (421)
+.|.++ ++.|.+..+.+...+..... .+++.+..|+++||+|||+.+..+.....++.+.+.+. . + +
T Consensus 29 ~l~~~l~~~~g~s~~~~g~~~s~~~~~-~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~~~~~~--~----~----~- 96 (395)
T PRK10054 29 FMTIYLSRQYSLSVDLIGYAMTIALTI-GVVFSLGFGILADKFDKKRYMLLAITAFASGFIAIPLV--N----N----V- 96 (395)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHH--h----H----H-
Confidence 344444 56899988888777665444 67888999999999999998776665554444433321 0 0 1
Q ss_pred HHHHHHHHHHHHHhhcccccccceeccccCccchhhhhhHHHHHHHHHHHHHHHHHhHHHHHHcCcchhhHHHHHHHHHH
Q 014616 298 WIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELVGTGATFLILAGIAVLA 377 (421)
Q Consensus 298 ~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 377 (421)
+.......... .......+...++..|.+|++.|+++.++.+....++..+++...+.+.+ .+|...|...+...++.
T Consensus 97 ~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~-~g~~~~f~~~~~~~~i~ 174 (395)
T PRK10054 97 TLVVLFFALIN-CAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVM-QSINLPFWLAAICSAFP 174 (395)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccCcHHHHHHHHHHHH
Confidence 11111111111 11112245566777899999999999999999999999999888777665 67888888877776666
Q ss_pred HHHHHhhccCCC
Q 014616 378 VVFVILFVPETQ 389 (421)
Q Consensus 378 ~~~~~~~~~et~ 389 (421)
.+...+..||++
T Consensus 175 ~i~~~~~~~~~~ 186 (395)
T PRK10054 175 LVFIQIWVQRSE 186 (395)
T ss_pred HHHHHHHHhccc
Confidence 555545455553
|
|
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.4e-09 Score=106.04 Aligned_cols=162 Identities=15% Similarity=0.111 Sum_probs=99.9
Q ss_pred hchHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHhhHHHHHHHHHHHHHHhhCCCCCCCcchh
Q 014616 218 YYSPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYG 297 (421)
Q Consensus 218 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 297 (421)
+..|++.++ |.+..+.+....... ....++.++.|+++||+|||+.++.+....+++.+.+.+... .. ...
T Consensus 50 ~~~p~l~~~-g~s~~~~g~~~~~~~-i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~~~i~~~~~~~~~~--~~----~~~- 120 (452)
T PRK11273 50 LAMPYLVEQ-GFSRGDLGFALSGIS-IAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPW--AT----SSI- 120 (452)
T ss_pred HhhHHHHHc-CCCHHHHHHHHHHHH-HHHHHHHhhhhhhhhccCCchhHHHHHHHHHHHHHHHHhhhc--cc----ccH-
Confidence 456766666 888777776665544 447889999999999999999888776665555544433210 00 011
Q ss_pred HHHHHHHHHHHHHhhcccccccceeccccCccchhhhhhHHHHHHHHHHHHHHHHHh-HHHHHHcCcchhhHHHHHHHHH
Q 014616 298 WIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTF-LTVAELVGTGATFLILAGIAVL 376 (421)
Q Consensus 298 ~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~ 376 (421)
+.......+ ..+......+.......|.+|++.|+.+.++.++...+++.+.+... .......+|+..|++.+.+.++
T Consensus 121 ~~~~~~~~l-~gi~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~gw~~~f~i~~~~~~~ 199 (452)
T PRK11273 121 AVMFVLLFL-CGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMAWFNDWHAALYMPAFAAIL 199 (452)
T ss_pred HHHHHHHHH-HHHHHhccchHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 111111111 11112122233345567889999999999998888887764433332 2233334788888888877777
Q ss_pred HHHHHHhhccCCC
Q 014616 377 AVVFVILFVPETQ 389 (421)
Q Consensus 377 ~~~~~~~~~~et~ 389 (421)
..++..++.||++
T Consensus 200 ~~~l~~~~~~~~~ 212 (452)
T PRK11273 200 VALFAFAMMRDTP 212 (452)
T ss_pred HHHHHHHHccCCH
Confidence 6666666667764
|
|
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=99.16 E-value=6.7e-08 Score=89.25 Aligned_cols=304 Identities=17% Similarity=0.135 Sum_probs=169.5
Q ss_pred Hhhhhhhhcccc-----hhHHHHHH-HHHHHHHHHHHHh-----cC--------Ch---hHHHHHHHHHHhhhhhhhhhH
Q 014616 10 AASGGWINDAYG-----RKKATLLA-DVVFTAGAIIMAA-----AP--------DP---YVLILGRLLVGLGVGIASVTA 67 (421)
Q Consensus 10 ~~~~g~l~dr~G-----rr~~~~~~-~~l~~i~~~~~~~-----~~--------s~---~~l~~~R~l~G~g~g~~~~~~ 67 (421)
.+..|..+|+.+ ||..+++. .++...+..+..+ +. .+ ......-.+.|+|.+......
T Consensus 31 R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~~~~~~~~~g~~~a~l~F~l~G~G~~~s~T~~ 110 (403)
T PF03209_consen 31 RVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQQSSGPFWLGLALAALAFLLYGLGVHASGTSF 110 (403)
T ss_pred HHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHhhHhHhHHHH
Confidence 457899999999 88766654 4444443333222 22 21 233456688899999999999
Q ss_pred HHHHhhcCCCCCccchhchHHHHHHHHHHHHHHHhhhcccCCccchHHHHhhHHHHH--H-HHHHhhcCCcChHHHHhcC
Q 014616 68 PVYIAEASPSEVRGGLVSTNVLMITSGQFLSYLVNLAFTEVPGTWRWMLGVSAVPAI--I-QFVLMLFMPESPRWLFMKS 144 (421)
Q Consensus 68 ~~~i~e~~p~~~rg~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~Wr~~f~~~~~~~l--~-~~~~~~~~~esp~~~~~~~ 144 (421)
.++++|..|+|+|++..+....+...|.+++..+...+......=|..-.+.....+ + .++..+. .|.+.-...+.
T Consensus 111 lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~s~~rL~~v~~~~a~i~~~l~~ia~wg-~E~r~~~~~~~ 189 (403)
T PF03209_consen 111 LALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGRLLDPFSPERLIQVIQGVALIALLLNLIALWG-QEPRRSRRAAA 189 (403)
T ss_pred HHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHHHHHHHHHHHHHHHHHHh-cccCCcccccC
Confidence 999999999999999999999999999999887776655444333433333322222 1 1222222 22211000000
Q ss_pred CHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHhhcccccHHHhhcchhHHHHHHHHHHHHHHHhhcCccee-hhchHHH
Q 014616 145 DKEKAILVLSKIYDIARLEDEIDHLSAAAEEELRKKKTVRYLDVFKSKEIRLAFLAGAGLQAFQQFTGINTV-MYYSPTI 223 (421)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 223 (421)
+ ++++..-...+.+.+.+|+.++.+...... .+. +... ...-|+=
T Consensus 190 ~-----------------------------~~~~~~f~~a~~~~~~~~~a~~f~~fl~l~-t~a----~~~QD~iLEPyg 235 (403)
T PF03209_consen 190 A-----------------------------ERPRPPFREAWRQVWASPQARRFFVFLFLG-TLA----FFMQDVILEPYG 235 (403)
T ss_pred C-----------------------------CCCCccHHHHHHHHHhCCChhHHHHHHHHH-HHH----HHhhHHHcCCch
Confidence 0 000000112345566666655543321111 111 1111 1123444
Q ss_pred HHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHh-hcCChhHHHHhhHHHHHHHHHHHHHHhhCCCCCCCcchhHHHHH
Q 014616 224 VQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLID-HFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVI 302 (421)
Q Consensus 224 ~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~g~l~d-r~grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 302 (421)
-+..|++..+.+.+......+ ..+|..+.|++.. |.++++....++....+++.++...-.. .+.+.......+.
T Consensus 236 g~Vfgmsv~eTT~Lta~~~~G-~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a~~~---~~~~~~~~~~~l~ 311 (403)
T PF03209_consen 236 GEVFGMSVGETTRLTAFWGGG-TLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIILAGPL---GSPWLFRPGVFLL 311 (403)
T ss_pred hHHcCCCHHHHHHHHHHHHHH-HHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhc---ccchHHHHHHHHH
Confidence 466788888877776665544 6788888777766 6777777666666666666555443221 1111111111222
Q ss_pred HHHHHHHHhhcccccc-cceeccccCccchhhhhhHHHHHHHHHHHHHHHHHhHHHHH
Q 014616 303 GLALYIAFFAPGMGPV-PWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAE 359 (421)
Q Consensus 303 ~~~~~~~~~~~g~~~~-~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~ 359 (421)
++ ..|...+ ..+...++.+++..|...|.....+.++..++...-+...|
T Consensus 312 G~-------g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D 362 (403)
T PF03209_consen 312 GL-------GNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRD 362 (403)
T ss_pred HH-------hhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 21 1111111 12344677777888888898888888877777666666555
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=99.16 E-value=3.3e-09 Score=104.92 Aligned_cols=150 Identities=20% Similarity=0.095 Sum_probs=90.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHhhHHHHHHHHHHHHHHhhCCCCCCCcchhHHHHHHHHHHHHHhh
Q 014616 233 QLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLALYIAFFA 312 (421)
Q Consensus 233 ~~~~~~~~~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (421)
..+..... ...+.+++.++.|+++||+|||+.+..+.....++.++.... .. .. .......+...-+...+..
T Consensus 57 ~~~~~~~~-~~ig~~ig~~~~g~l~d~~Grr~~~~~~~~~~~v~~~~~~~~---~~--~~-~~~~~~~~~~~r~l~G~~~ 129 (502)
T TIGR00887 57 VSAAVNGS-ASIGTLAGQLFFGWLADKLGRKRVYGMELIIMIIATVASGLS---PG--SS-PKSVMATLCFWRFWLGVGI 129 (502)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHc---cC--cc-cchHHHHHHHHHHHHHHHH
Confidence 33444444 445578999999999999999999877666555554443321 11 00 0000111111122222333
Q ss_pred cccccccceeccccCccchhhhhhHHHHHHHHHHHHHHHHHhHHHHH-----------------------HcCcchhhHH
Q 014616 313 PGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAE-----------------------LVGTGATFLI 369 (421)
Q Consensus 313 ~g~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~-----------------------~~g~~~~~~~ 369 (421)
.+..+...++.+|.+|++.|+.+.++.+....+|..+++.+...+.. ..+|...+.+
T Consensus 130 g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~ 209 (502)
T TIGR00887 130 GGDYPLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGAIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGF 209 (502)
T ss_pred hhhhHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccchhcccHHHHHHH
Confidence 34456677899999999999999999999988888777665543322 1256666654
Q ss_pred HHHHHHHHHHHHHhhccCCCC
Q 014616 370 LAGIAVLAVVFVILFVPETQG 390 (421)
Q Consensus 370 ~~~~~~~~~~~~~~~~~et~~ 390 (421)
.+...++ ..+..++.||+++
T Consensus 210 ~~ip~~i-~~~~~~~lpESpr 229 (502)
T TIGR00887 210 GAVPALL-ALYFRLTIPETPR 229 (502)
T ss_pred HHHHHHH-HHHHHHhCCCCHH
Confidence 4444433 3344466799844
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=2e-09 Score=105.88 Aligned_cols=161 Identities=18% Similarity=0.122 Sum_probs=96.7
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHhhHHHHHHHHHHHHHHhhCCCCCCCcchhHHHHHHHHHH
Q 014616 228 GFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLALY 307 (421)
Q Consensus 228 g~~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (421)
+.+..+.+...+... .+.+++.++.|+++||+|||+.+..+.....++.+..............+....+..+...-+.
T Consensus 51 ~~~~~~~~~~~s~~~-ig~~~~~~~~G~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l 129 (479)
T PRK10077 51 SAANSLLGFCVASAL-IGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRII 129 (479)
T ss_pred cCChhHHHHHHHHHH-HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHH
Confidence 555556666555544 4478999999999999999999887766655554443321100000000000111111111122
Q ss_pred HHHhhcccccccceeccccCccchhhhhhHHHHHHHHHHHHHHHHHhHHHH--------HHcCcchhhHHHHHHHHHHHH
Q 014616 308 IAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVA--------ELVGTGATFLILAGIAVLAVV 379 (421)
Q Consensus 308 ~~~~~~g~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~--------~~~g~~~~~~~~~~~~~~~~~ 379 (421)
..+...+..+...++..|.+|++.|+.+.++.+....+|..+++....... +..+|++.|++.+...++..+
T Consensus 130 ~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~ 209 (479)
T PRK10077 130 GGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNTDGWRYMFASEAIPALLFLM 209 (479)
T ss_pred HhhhHhHHhhHHHHHHHhhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccCChHHHHHHHHHHHHHHHH
Confidence 223333445666778899999999999999988888888776654433222 235788888877666666544
Q ss_pred HHHhhccCCCC
Q 014616 380 FVILFVPETQG 390 (421)
Q Consensus 380 ~~~~~~~et~~ 390 (421)
..++.||+++
T Consensus 210 -~~~~l~~s~~ 219 (479)
T PRK10077 210 -LLYFVPETPR 219 (479)
T ss_pred -HHHcCCCCcH
Confidence 3456788753
|
|
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=8.8e-10 Score=105.48 Aligned_cols=161 Identities=17% Similarity=0.148 Sum_probs=108.5
Q ss_pred hchHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHhhHHHHHHHHHHHHHHhhCCCCCCCcchh
Q 014616 218 YYSPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYG 297 (421)
Q Consensus 218 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 297 (421)
...|.+.++.|.+..+.+....... ....++.++.|+++||+|||+.++.+.....++....... . + .
T Consensus 24 ~~lp~~~~~~~~s~~~~~~~~~~~~-~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~~~~----~--~----~- 91 (392)
T PRK10473 24 VGLPRIAADLNASEAQLHIAFSVYL-AGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLCSLA----E--T----S- 91 (392)
T ss_pred hhHHHHHHHhCCCHHHHHHHHHHHH-HHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHHHHHh----C--c----H-
Confidence 4567778888888777666555544 4467888999999999999998877665555544443221 0 0 1
Q ss_pred HHHHHHHHHHHHHhhcccccccceeccccCccchhhhhhHHHHHHHHHHHHHHHHHhHHHHHHcCcchhhHHHHHHHHHH
Q 014616 298 WIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELVGTGATFLILAGIAVLA 377 (421)
Q Consensus 298 ~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 377 (421)
+....... ..........+..+++..|.+|++.|+.+.+..+....++..+++.....+.+..+|...+++.+...++.
T Consensus 92 ~~~~~~~~-l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~g~~~~~~~~~~~~~i~ 170 (392)
T PRK10473 92 SLFLAGRF-LQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLKFPWQSLFYTMAAMGILV 170 (392)
T ss_pred HHHHHHHH-HHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHHHHHHHHHHHHH
Confidence 11111111 11111112234456678899999999999999998888888888777777667778888888888877777
Q ss_pred HHHHHhhccCCCCC
Q 014616 378 VVFVILFVPETQGL 391 (421)
Q Consensus 378 ~~~~~~~~~et~~~ 391 (421)
.+......||++.+
T Consensus 171 ~~~~~~~~~~~~~~ 184 (392)
T PRK10473 171 LLLSLFILKETRPA 184 (392)
T ss_pred HHHHHHHcCCCCCc
Confidence 66666667777543
|
|
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.5e-10 Score=111.53 Aligned_cols=133 Identities=20% Similarity=0.237 Sum_probs=106.9
Q ss_pred hhhHHHHhhhhhhhcccchhHHHHHHHHHHHHHHHHHHhcC----ChhHHHHHHHHHHhhhhhhhhhHHHHHhhcCCCCC
Q 014616 4 VGAIVGAASGGWINDAYGRKKATLLADVVFTAGAIIMAAAP----DPYVLILGRLLVGLGVGIASVTAPVYIAEASPSEV 79 (421)
Q Consensus 4 ig~~~g~~~~g~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~----s~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~ 79 (421)
++.+++.++.|+++||+|||+++..+.++.+++..+..... ++..+++.++++|++.+...+....++.|++|+++
T Consensus 262 i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~~~~~~~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~ 341 (418)
T TIGR00889 262 FSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAYGDPEYFGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHI 341 (418)
T ss_pred HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
Confidence 45667788999999999999999999999988877766642 23567788999999999999998999999999999
Q ss_pred ccchhchHH-HHHHHHHHHHHHHhhhcccCC-----ccchHHHHhhHHHHHHHHHH-hhcCCcC
Q 014616 80 RGGLVSTNV-LMITSGQFLSYLVNLAFTEVP-----GTWRWMLGVSAVPAIIQFVL-MLFMPES 136 (421)
Q Consensus 80 rg~~~~~~~-~~~~~g~~l~~~~~~~~~~~~-----~~Wr~~f~~~~~~~l~~~~~-~~~~~es 136 (421)
|+...+... .....|..+++.+++.+.+.. .+||+.|.+.++..++..+. .++++|+
T Consensus 342 ~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~~~~~ 405 (418)
T TIGR00889 342 RASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFAGYIAILAVLFMIFFKYS 405 (418)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 999999886 566788888888887665442 25999999887776665544 4566776
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=2.7e-10 Score=109.27 Aligned_cols=132 Identities=14% Similarity=0.208 Sum_probs=109.0
Q ss_pred hhhhHHHHhhhhhhhcccchhHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHhhhhhhhhhHHHHHhhcCCCCCccc
Q 014616 3 LVGAIVGAASGGWINDAYGRKKATLLADVVFTAGAIIMAAAPDPYVLILGRLLVGLGVGIASVTAPVYIAEASPSEVRGG 82 (421)
Q Consensus 3 ~ig~~~g~~~~g~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~s~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg~ 82 (421)
.++.+++.++.|++.||+|||+.+..+..+.+++..+..+.+|.+.+++.+++.|++.+...+.....+.|..|+++||+
T Consensus 259 ~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~g~ 338 (399)
T PRK05122 259 GVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLWLAPSPWMALIGAALTGFGFSLVFPALGVEAVKRVPPQNRGA 338 (399)
T ss_pred HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCHHHHHH
Confidence 35778899999999999999999999998888888888888898888899999999999988888888889999999999
Q ss_pred hhchHHHHHHHHHHHHHHHhhhcccCCccchHHHHhhHHHHHHHHHHhhcCCc
Q 014616 83 LVSTNVLMITSGQFLSYLVNLAFTEVPGTWRWMLGVSAVPAIIQFVLMLFMPE 135 (421)
Q Consensus 83 ~~~~~~~~~~~g~~l~~~~~~~~~~~~~~Wr~~f~~~~~~~l~~~~~~~~~~e 135 (421)
..+........|..+++.+...+.+.. +|++.|++.+...++.++....+++
T Consensus 339 ~~g~~~~~~~~g~~~~~~~~g~l~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~ 390 (399)
T PRK05122 339 ALGAYSVFLDLSLGITGPLAGLVASWF-GYPSIFLAAALAALLGLALTWLLYR 390 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHc-CHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999888888888777766665554444 4999999888777766655444433
|
|
| >KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.15 E-value=2.6e-10 Score=108.12 Aligned_cols=135 Identities=25% Similarity=0.323 Sum_probs=100.2
Q ss_pred hhhhHHHHhhhhhhhcccch-hHHHHHHHHHHHHHHHHH-Hh--c-C-ChhHHHHHHHHHHhhhhhhhhhHHHHHhhcCC
Q 014616 3 LVGAIVGAASGGWINDAYGR-KKATLLADVVFTAGAIIM-AA--A-P-DPYVLILGRLLVGLGVGIASVTAPVYIAEASP 76 (421)
Q Consensus 3 ~ig~~~g~~~~g~l~dr~Gr-r~~~~~~~~l~~i~~~~~-~~--~-~-s~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p 76 (421)
-+|.+++++.+|++..|.+. |+.++.+.++..+++++. +. . + ..+.++++|++.|+|.|... ..-+|+++-..
T Consensus 81 slg~~i~~liF~~Ws~k~~~~k~Pli~s~ii~~~g~llY~~l~~~~~~~~y~mL~~R~l~Gvg~~n~a-~lR~Y~a~~s~ 159 (488)
T KOG2325|consen 81 SLGHAIFSLIFGIWSNKTGSVKKPLIVSFLIAIIGNLLYLALAYVPNGVKYLMLVARILTGVGVGNFA-VLRAYIADAST 159 (488)
T ss_pred HHHHHhcchhhcccccccCCcccCHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHcCcCcccHH-HHHHHHHhccC
Confidence 36888999999999999997 888899999999999987 32 2 2 45788999999999987755 46679999888
Q ss_pred CCCccchhchHHHHHHHHHHHHHHHhhhcccCC-ccc-----------hHHHHhhHHHHHHHHHH-hhcCCcChH
Q 014616 77 SEVRGGLVSTNVLMITSGQFLSYLVNLAFTEVP-GTW-----------RWMLGVSAVPAIIQFVL-MLFMPESPR 138 (421)
Q Consensus 77 ~~~rg~~~~~~~~~~~~g~~l~~~~~~~~~~~~-~~W-----------r~~f~~~~~~~l~~~~~-~~~~~esp~ 138 (421)
.++|.++.+....+...|.++|+.++.++.... .+| -.+-|+.++..++.+++ ..+++|.++
T Consensus 160 ~~dR~rA~a~~~~~~vlg~ilGp~~q~~f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f~E~~~ 234 (488)
T KOG2325|consen 160 VEDRPRAFAATSGGFVLGIILGPTIQLAFTPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILFFFKEVYR 234 (488)
T ss_pred ccchHHHHHHhhhHHHHHHHHhHHHHHHHhhhcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHHhheeeccc
Confidence 888988888877777788888877776654422 111 23445566656655444 455677665
|
|
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.5e-09 Score=104.43 Aligned_cols=158 Identities=15% Similarity=0.078 Sum_probs=106.8
Q ss_pred hHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHhhHHHHHHHHHHHHHHhhCCCCCCCcchhHH
Q 014616 220 SPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGWI 299 (421)
Q Consensus 220 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 299 (421)
.|.+.++.+.+........+.... +..++.+..|+++||+|||+.++.+.....++.+..... .+ .. .
T Consensus 39 l~~i~~~~~~~~~~~~~~~s~~~~-~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a------~~----~~-~ 106 (413)
T PRK15403 39 IINVVRDFNADVSLAPASVSLYLA-GGMALQWLLGPLSDRIGRRPVLITGALIFTLACAATLFT------TS----MT-Q 106 (413)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHH-HHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHHHHHc------CC----HH-H
Confidence 455667788887777666665554 467889999999999999998877665555444333221 11 11 1
Q ss_pred HHHHHHHHHHHhhcccccccceeccccCccchhhhhhHHHHHHHHHHHHHHHHHhHHHHHHcCcchhhHHHHHHHHHHHH
Q 014616 300 AVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELVGTGATFLILAGIAVLAVV 379 (421)
Q Consensus 300 ~~~~~~~~~~~~~~g~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 379 (421)
.+..-.+ .........+..+++..|.+|++.|++..+..++...++..+++.+.+.+.+..+|.+.|++.++..++..+
T Consensus 107 l~~~r~l-~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~~~f~~~~~~~~i~~~ 185 (413)
T PRK15403 107 FLIARFI-QGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFVHWKVLFAIIAVMGLIAFV 185 (413)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence 1111111 111111112344567789999999999999999999999988888777778888999999998888777766
Q ss_pred HHHhhccCCCC
Q 014616 380 FVILFVPETQG 390 (421)
Q Consensus 380 ~~~~~~~et~~ 390 (421)
..++..||+++
T Consensus 186 ~~~~~lp~~~~ 196 (413)
T PRK15403 186 GLLLAMPETVK 196 (413)
T ss_pred HHHHhCCCCcc
Confidence 55566788754
|
|
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.13 E-value=3.3e-10 Score=109.51 Aligned_cols=125 Identities=14% Similarity=0.055 Sum_probs=103.3
Q ss_pred hhhHHHHhhhhhhhcccchhHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHhhhhhhhhhHHHHHhhcCCCCCccch
Q 014616 4 VGAIVGAASGGWINDAYGRKKATLLADVVFTAGAIIMAAAPDPYVLILGRLLVGLGVGIASVTAPVYIAEASPSEVRGGL 83 (421)
Q Consensus 4 ig~~~g~~~~g~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~s~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg~~ 83 (421)
++..++.+++|++.||+|||+.+..+.++.+++..+.++++|++.+++.+++.|++.+...+....++.|..|++.|+..
T Consensus 273 ~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~a~~ 352 (420)
T PRK09528 273 FLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFATGPLEVSILKLLHAFEVPFLLVGVFKYITLNFDVRLSATI 352 (420)
T ss_pred HHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccceeee
Confidence 45668899999999999999999999999999989999999999999999999999988888888999999999998866
Q ss_pred hch-HHHHHHHHHHHHHHHhhhcccCCccchHHHHhhHHHHHHHHHH
Q 014616 84 VST-NVLMITSGQFLSYLVNLAFTEVPGTWRWMLGVSAVPAIIQFVL 129 (421)
Q Consensus 84 ~~~-~~~~~~~g~~l~~~~~~~~~~~~~~Wr~~f~~~~~~~l~~~~~ 129 (421)
.+. ++.....|..+++.+.+.+.+.. +||..|.+.++..++..++
T Consensus 353 ~~~~~~~~~~lg~~ig~~~~G~l~~~~-G~~~~f~~~~~~~~i~~~~ 398 (420)
T PRK09528 353 YLVGFQFAKQLGAVFLSTLAGNLYDSI-GFQGTYLILGGIVLLFTLI 398 (420)
T ss_pred eeehHHHHHHHHHHHHHHHHHHHHHhh-CchHHHHHHHHHHHHHHHH
Confidence 543 44556678888777777666555 4999999877766654444
|
|
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=99.13 E-value=4.6e-10 Score=110.53 Aligned_cols=163 Identities=19% Similarity=0.211 Sum_probs=114.2
Q ss_pred ehhchHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHhhHHHHHHHHHHHHHHhhCCCCCCCcc
Q 014616 216 VMYYSPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGV 295 (421)
Q Consensus 216 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 295 (421)
.....|.+.++.|.+..+.+....... ....++.++.|+++||+|||+.++.+.....++....... .+
T Consensus 21 ~~~~~p~~~~~~g~s~~~~~~~~~~~~-~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~------~~---- 89 (485)
T TIGR00711 21 VNVAIPTIAGDLGSSLSQVQWVITSYM-LANAISIPLTGWLAKRFGTRRLFLISTFAFTLGSLLCGVA------PN---- 89 (485)
T ss_pred HHHHHHHHHHhcCCChhhhhHHHHHHH-HHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHHHHHhCc------CC----
Confidence 345578888888988777666655544 4578899999999999999998877665555444333211 11
Q ss_pred hhHHHHHHHHHHHHHhhcccccccceeccccCccchhhhhhHHHHHHHHHHHHHHHHHhHHHHHHcCcchhhHHHHHHHH
Q 014616 296 YGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELVGTGATFLILAGIAV 375 (421)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 375 (421)
. +..+. ......+......+...++..|.+|++.|+.+.++..+...++..+++.+.+.+.+..+|.+.|++.+...+
T Consensus 90 ~-~~l~~-~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~~~~~~~~ 167 (485)
T TIGR00711 90 L-ELMII-FRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENYHWRWIFLINVPIGI 167 (485)
T ss_pred H-HHHHH-HHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhccCcCceehhhhhhHHHH
Confidence 1 11111 112222222334466677889999999999999999999999999998888888888899999988887777
Q ss_pred HHHHHHHhhccCCCCC
Q 014616 376 LAVVFVILFVPETQGL 391 (421)
Q Consensus 376 ~~~~~~~~~~~et~~~ 391 (421)
+..+...++.||++++
T Consensus 168 ~~~~~~~~~~~~~~~~ 183 (485)
T TIGR00711 168 IVVVVAFFILPRDKPA 183 (485)
T ss_pred HHHHHHHHHcCCcccc
Confidence 7666666666765443
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.6e-09 Score=104.91 Aligned_cols=144 Identities=21% Similarity=0.198 Sum_probs=98.0
Q ss_pred eehhchHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHhhHHHHHHHHHHHHHHhhCCCCCCCc
Q 014616 215 TVMYYSPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSG 294 (421)
Q Consensus 215 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 294 (421)
...+..|.+.++.|.+..+.+...+... ....++.++.|+++||+|||+.+..+.....++........ +
T Consensus 36 ~~~~~~~~i~~~~~~s~~~~~~~~~~~~-~~~~l~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~------~--- 105 (426)
T PRK12307 36 LIFYIMYLIKADLGLTDMEGAFLATAAF-IGRPFGGALFGLLADKFGRKPLMMWSIVAYSVGTGLSGLAS------G--- 105 (426)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHh------H---
Confidence 3345567777788998877776665544 44788999999999999999998877766665554443320 0
Q ss_pred chhHHHHHHHHHHHHHhhcccccccceeccccCccchhhhhhHHHHHHHHHHHHHHHHHhHHHHHHcCcchhhHHHH
Q 014616 295 VYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELVGTGATFLILA 371 (421)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 371 (421)
. +..... -....+...+..+....+..|.+|++.|+++.++..+...++.++++.+.+.+.+..+|.+.|++..
T Consensus 106 -~-~~l~~~-r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~~~~~w~~~f~i~~ 179 (426)
T PRK12307 106 -V-IMLTLS-RFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFAEAYGWRAAFFVGL 179 (426)
T ss_pred -H-HHHHHH-HHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHHcccCCHHHHHHHHH
Confidence 0 111111 1111122222345556677899999999999999988888998888877777777778887777643
|
|
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.4e-09 Score=102.74 Aligned_cols=159 Identities=14% Similarity=0.123 Sum_probs=106.2
Q ss_pred hchHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHhhHHHHHHHHHHHHHHhhCCCCCCCcchh
Q 014616 218 YYSPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYG 297 (421)
Q Consensus 218 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 297 (421)
...|.+.++.|.+..+.+...+....+ ..++.+..|+++||+|||++..........+... . . ... .+.
T Consensus 12 ~~lp~i~~~~~~s~~~~g~~~s~~~~g-~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~--~-~-~~~------~~~ 80 (368)
T TIGR00903 12 PVLSLVAEDIDVSKEELGLLAITYPAA-FLALTIPSGLLLDRAFKRWFLFGSLATFAAAAGR--L-L-DPF------NYE 80 (368)
T ss_pred hhHHHHHHHhCcCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHH--H-H-Hhc------cHH
Confidence 356777888999888877776655544 6788889999999999998765433322222111 1 0 000 011
Q ss_pred HHHHHHHHHHHHHhhcccccccceeccccCccchhhhhhHHHHHHHHHHHHHHHHHhHHHHHHcCcchhhHHHHHHHHHH
Q 014616 298 WIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELVGTGATFLILAGIAVLA 377 (421)
Q Consensus 298 ~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 377 (421)
.. +.. -+.... ..+..+.......|.+|++.|+++.++.++...+|..+++...+.+.+..||+..|++.+.+.++.
T Consensus 81 ~l-~~~-R~l~G~-g~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~f~~~~~l~~~~ 157 (368)
T TIGR00903 81 WL-LAC-QLLAAL-GQPFLLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTAGGLQLLIIPIAAVAAAG 157 (368)
T ss_pred HH-HHH-HHHHHh-HhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHH
Confidence 11 111 111111 111122333445899999999999999999999999999888888888889999999988888777
Q ss_pred HHHHHhhccCCCC
Q 014616 378 VVFVILFVPETQG 390 (421)
Q Consensus 378 ~~~~~~~~~et~~ 390 (421)
.++.++..||+++
T Consensus 158 ~~~~~~~lp~~p~ 170 (368)
T TIGR00903 158 IILVLAALPALPF 170 (368)
T ss_pred HHHHHHHcCCCCC
Confidence 7777777888654
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=3.8e-09 Score=101.62 Aligned_cols=159 Identities=16% Similarity=0.098 Sum_probs=105.5
Q ss_pred chHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHhhHHHHHHHHHHHHHHhhCCCCCCCcchhH
Q 014616 219 YSPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGW 298 (421)
Q Consensus 219 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 298 (421)
..|.+.++.|.+..+.+...+... ....++.++.|+++||+|||+.+..+.....++....... . + + +
T Consensus 35 ~~~~~~~~~~~s~~~~~~~~~~~~-~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~---~---~----~-~ 102 (406)
T PRK15402 35 GMLAVVEDFNAGAEWVPTSMTAYL-AGGMFLQWLLGPLSDRIGRRPVMLAGVAFFILTCLAILLA---Q---S----I-E 102 (406)
T ss_pred chHHHHHHhCCCHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHH---c---c----H-H
Confidence 345667888888777766665544 4467888999999999999998876665555444433221 0 0 1 1
Q ss_pred HHHHHHHHHHHHhhcccccccceeccccCccchhhhhhHHHHHHHHHHHHHHHHHhHHHHHHcCcchhhHHHHHHHHHHH
Q 014616 299 IAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELVGTGATFLILAGIAVLAV 378 (421)
Q Consensus 299 ~~~~~~~~~~~~~~~g~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 378 (421)
..... .+..........+..++...|.+|++.|....++......++..+++.+...+.+..+|.+.+++.+...++..
T Consensus 103 ~l~~~-~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~w~~~~~~~~~~~~~~~ 181 (406)
T PRK15402 103 QFTLL-RFLQGIGLCFIGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALIHVLPWRGMFVLFAALAALSF 181 (406)
T ss_pred HHHHH-HHHHHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHH
Confidence 11111 11111111112344556778999999998888888777778888888887777787889888988888877766
Q ss_pred HHHHhhccCCCC
Q 014616 379 VFVILFVPETQG 390 (421)
Q Consensus 379 ~~~~~~~~et~~ 390 (421)
+..+...||+++
T Consensus 182 ~~~~~~~~~~~~ 193 (406)
T PRK15402 182 FGLWRAMPETAG 193 (406)
T ss_pred HHHHHhCCCCCc
Confidence 655566787754
|
|
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=9.1e-10 Score=105.40 Aligned_cols=130 Identities=16% Similarity=0.130 Sum_probs=103.5
Q ss_pred hhhHHHHhhhhhhhcccchhHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHhhhhhhhhhHHHHHhhcCCCCCccch
Q 014616 4 VGAIVGAASGGWINDAYGRKKATLLADVVFTAGAIIMAAAPDPYVLILGRLLVGLGVGIASVTAPVYIAEASPSEVRGGL 83 (421)
Q Consensus 4 ig~~~g~~~~g~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~s~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg~~ 83 (421)
++.+++.++.|+++||+|||+.+..+.....+........++++.+++.|++.+++.|...+....+..|..|+ +||..
T Consensus 263 ~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~g~~~~~~~~~~~~~~p~-~~g~~ 341 (393)
T PRK15011 263 GLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGMLMAHSPAILLGLQLLNAIYIGILGGIGMLYFQDLMPG-QAGSA 341 (393)
T ss_pred HHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CcchH
Confidence 34566789999999999999988877666665555555677888888999999998888777777888999885 58888
Q ss_pred hchHHHHHHHHHHHHHHHhhhcccCCccchHHHHhhHHHHHHHHHHhhcCCc
Q 014616 84 VSTNVLMITSGQFLSYLVNLAFTEVPGTWRWMLGVSAVPAIIQFVLMLFMPE 135 (421)
Q Consensus 84 ~~~~~~~~~~g~~l~~~~~~~~~~~~~~Wr~~f~~~~~~~l~~~~~~~~~~e 135 (421)
.+.+......|..+++.+++.+.+.. +|+..|++.++..++.++..++.||
T Consensus 342 ~~~~~~~~~lg~~~g~~l~G~i~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~ 392 (393)
T PRK15011 342 TTLYTNTSRVGWIIAGSLAGIVAEIW-NYHAVFWFALVMIIATLFCLLRIKD 392 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHhhcC
Confidence 88887778888888888887766554 5999999888877777776666654
|
|
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=4.6e-09 Score=103.05 Aligned_cols=158 Identities=10% Similarity=0.045 Sum_probs=98.7
Q ss_pred ehhchHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHhhHHHHHHHHHHHHHHhhCCCCCCCcc
Q 014616 216 VMYYSPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGV 295 (421)
Q Consensus 216 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 295 (421)
...+.|.+.++.|.+..+.+...... .....++.++.|+++||+|||+.+..+.....++.++..+. . +
T Consensus 55 ~~~~~~~l~~~~gls~~~~g~~~~~~-~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~---~---s---- 123 (476)
T PLN00028 55 AAPLLPIIRDNLNLTKSDIGNAGIAS-VSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTAPAVFCMSLV---S---S---- 123 (476)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHh---c---C----
Confidence 33456777888999887776654444 34467889999999999999998776555544444333221 0 1
Q ss_pred hhHHHHHHHHHHHHHhhcccccccceeccccCccchhhhhhHHHHHHHHHHHHHHHHHhHHHHH---------HcCcchh
Q 014616 296 YGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAE---------LVGTGAT 366 (421)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~---------~~g~~~~ 366 (421)
. +...... +...+...+. .....+.+|.+|++.|+.+.|+.++...++..+++.+.+.+.. ..||++.
T Consensus 124 ~-~~l~~~r-~l~G~~~~~~-~~~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~gWr~~ 200 (476)
T PLN00028 124 A-TGFIAVR-FFIGFSLATF-VSCQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFTAWRIA 200 (476)
T ss_pred H-HHHHHHH-HHHHHHHHhh-HHHHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHH
Confidence 1 1111111 1111111111 1223457899999999999999988888877776665544432 1478889
Q ss_pred hHHHHHHHHHHHHHHHhhccC
Q 014616 367 FLILAGIAVLAVVFVILFVPE 387 (421)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~e 387 (421)
|++.+++.++..+..+++.++
T Consensus 201 f~i~g~l~l~~~l~~~~~~~~ 221 (476)
T PLN00028 201 FFVPGLLHIIMGILVLTLGQD 221 (476)
T ss_pred HHHHHHHHHHHHHHHHHHcCc
Confidence 998888877766555554433
|
|
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.4e-09 Score=105.64 Aligned_cols=162 Identities=15% Similarity=0.103 Sum_probs=101.8
Q ss_pred hchHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHhhHHHHHHHHHHHHHHhhCCCCCCCcchh
Q 014616 218 YYSPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYG 297 (421)
Q Consensus 218 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 297 (421)
+..|.+.+ .|.+..+.+....... ....++.++.|+++||+|||+.+..+.....++....... . .. . ...
T Consensus 48 ~~~p~~~~-~g~s~~~~g~~~~~~~-~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~--~-~~--~-~~~- 118 (438)
T TIGR00712 48 LAMPYLVE-QGFSKGELGFALSAIS-IAYGFSKFIMGSVSDRSNPRVFLPAGLILSAAVMLLMGFV--P-WA--T-SSI- 118 (438)
T ss_pred hhhHHHHH-cCCCHhHhHHHHHHHH-HHHHHhhhccchhhhccCCceehHHHHHHHHHHHHHHhcc--c-cc--c-chH-
Confidence 34565554 5888777776665554 4478899999999999999998776555544444332211 0 00 0 011
Q ss_pred HHHHHHHHHHHHHhhcccccccceeccccCccchhhhhhHHHHHHHHHHHHHHHHHhHHHH-HHcCcchhhHHHHHHHHH
Q 014616 298 WIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVA-ELVGTGATFLILAGIAVL 376 (421)
Q Consensus 298 ~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~ 376 (421)
+.......+ ..+......+.......|.+|++.|+++.++.++...+++.+++.+..... +..+|+..|++.+..+++
T Consensus 119 ~~l~~~~~l-~g~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~w~~~f~~~~~~~~i 197 (438)
T TIGR00712 119 AIMFVLLFL-NGWFQGMGWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAWFNDWHAALYFPAICAII 197 (438)
T ss_pred HHHHHHHHH-HHHHhhcchHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 111111111 111111122334456678999999999999999999898888777665433 346788889888888777
Q ss_pred HHHHHHhhccCCC
Q 014616 377 AVVFVILFVPETQ 389 (421)
Q Consensus 377 ~~~~~~~~~~et~ 389 (421)
..+..+++.||++
T Consensus 198 ~~~~~~~~~~~~~ 210 (438)
T TIGR00712 198 VALFAFAMMRDTP 210 (438)
T ss_pred HHHHHHHhccCCH
Confidence 7666666667754
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.09 E-value=3e-08 Score=95.25 Aligned_cols=315 Identities=16% Similarity=0.165 Sum_probs=179.5
Q ss_pred hhhhHHHHhhhhhhhcccchhHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHhh--hhhhhhhHHHHHhhcCCCCCc
Q 014616 3 LVGAIVGAASGGWINDAYGRKKATLLADVVFTAGAIIMAAAPDPYVLILGRLLVGLG--VGIASVTAPVYIAEASPSEVR 80 (421)
Q Consensus 3 ~ig~~~g~~~~g~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~s~~~l~~~R~l~G~g--~g~~~~~~~~~i~e~~p~~~r 80 (421)
.+..++.++..|.++||+|||..+.+..+...+...+..+.. ++.++ +.|+. .+.......++++|....|+|
T Consensus 72 ~~~~~i~s~~iG~lSD~~grk~~L~~~~~~~~l~~~~~~~~~-~~~~~----~~~l~g~~~~~~s~~~a~vadis~~~~R 146 (463)
T KOG2816|consen 72 GLLTLISSPLIGALSDRYGRKVVLLLPLFGTILPALCLLFQG-YWFFL----LLGLSGGFSAIFSVGFAYVADISSEEER 146 (463)
T ss_pred HHHHHHHHhhhHHhhhhhhhhhhHHHHHHHHHHhHHHHHHHH-HHHhh----hcccccchhhhhhhhhhheeeccchhHH
Confidence 356678889999999999999999998888777777766655 44444 55553 345677888899999999999
Q ss_pred cchhchHHHHHHHHHHHHHHHhhhcccCCccchHHHHhhHHHHHHHHHH-hhcCCcChHHHHhcCCHHHHHHHHHHhcCh
Q 014616 81 GGLVSTNVLMITSGQFLSYLVNLAFTEVPGTWRWMLGVSAVPAIIQFVL-MLFMPESPRWLFMKSDKEKAILVLSKIYDI 159 (421)
Q Consensus 81 g~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~Wr~~f~~~~~~~l~~~~~-~~~~~esp~~~~~~~~~~~~~~~~~~~~~~ 159 (421)
....+.....+..+..+++..+....... +--..|.+.++..++..+. +.++||+-.....+ +.+. ......
T Consensus 147 ~~~~gll~~~~~~~~~~~p~~~~~~~~~~-~~a~~f~ia~~~~~~~~~y~~~~l~Esl~~~~~~-~~~~-----~~~~~~ 219 (463)
T KOG2816|consen 147 SSSIGLLSGTFGAGLVIGPALGGYLVKFL-GIALVFLIAAASGILSLLYMLLFLPESLQEKERS-DATL-----RELTPG 219 (463)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHhc-CchHHHHHHHHHHHHHHHHHhhccccccCccccc-cccc-----cccCCC
Confidence 98888777766666666766665543332 2455777777777666554 56678874311111 0000 000000
Q ss_pred hhhHHHHHHHHHHHHHHHhhcccccHHHhhcchhHHHHHHHHHHHHHHHhhcCcc-eehhchHHHHHHcCCCChHHHHHH
Q 014616 160 ARLEDEIDHLSAAAEEELRKKKTVRYLDVFKSKEIRLAFLAGAGLQAFQQFTGIN-TVMYYSPTIVQMAGFQSNQLALLL 238 (421)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~ 238 (421)
.. . ..+..+ ........-.+|............... ...+.. ...+|. ....+.+..+.+.+.
T Consensus 220 ~~-------~----~~~~~~-~~~~~~~~~~~r~~l~l~l~~~~~~~~-~~~~~~~~~~~yl---~~~f~w~~~~~s~~~ 283 (463)
T KOG2816|consen 220 SL-------D----SSHVAD-AFQSLTKVGPDRLLLLLLLVAFLSSLP-EAGGASDVLLLYL---KAKFGWNKKEFSDLL 283 (463)
T ss_pred cc-------c----chhhhh-hhhhhcccCCCccchHHHHHHHHHHHH-HhcCceeEEEEEE---eeecCcCHHHHHHHH
Confidence 00 0 000000 000000000111111111211111111 111111 112221 234578888877666
Q ss_pred HHHHHHHHHHHHHHH-HHHHhhcCChhHHHHhhHHHHHHHHHHHHHHhhCCCCCCCcchhHHHHHHHHHHHHHhhccccc
Q 014616 239 SLAVAGTNAVGTIVG-IYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLALYIAFFAPGMGP 317 (421)
Q Consensus 239 ~~~~~~~~~~g~~~~-g~l~dr~grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 317 (421)
...... ..++.++. +.+...++-|+....+...-.+......++- ..+..+ . ... .......+.|
T Consensus 284 ~~~~~~-~~i~~l~~~~~l~~~l~~~~~i~lGl~~~~~~~~~~af~~------~~w~~~--~---~~v--~~~~~~~~~p 349 (463)
T KOG2816|consen 284 SLVSIL-GIISQLLLLPLLSSILGEKRLISLGLLSEFLQLLLFAFAT------ETWMMF--A---AGV--VVALAGIVFP 349 (463)
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHHHHHhc------cchhhh--H---HHH--HHHhhcchhH
Confidence 665554 45665554 4788888888877667766666665555431 111111 1 111 1112223445
Q ss_pred ccceeccccCccchhhhhhHHHHHHHHHHHHHHHHHhHHHHH
Q 014616 318 VPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAE 359 (421)
Q Consensus 318 ~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~ 359 (421)
...+..+....++.+|+..++...+..+.+.+++..+..+..
T Consensus 350 a~~s~~s~~v~~~e~g~v~~~is~i~~l~~~~~~~~~~~i~~ 391 (463)
T KOG2816|consen 350 AIRAFASILVSPEEQGKVFGIISGIEGLSGVVSPALYGNIFA 391 (463)
T ss_pred HHHhHHHhhcccccccchhhHHHHHHHHhhhhhHHHHHHHHH
Confidence 666777888889999999999999999999988888776643
|
|
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.7e-09 Score=105.90 Aligned_cols=148 Identities=19% Similarity=0.204 Sum_probs=92.8
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHhhHHHHHHHHHHHHHHhhCCCCCCCcchhHHHHHHHHHHHHH
Q 014616 231 SNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLALYIAF 310 (421)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (421)
..+.+...+... ....++.++.|+++||+|||+.+..+.....++.++.... . ... .+ +..+.. .....+
T Consensus 70 ~~~~~~~~~~~~-~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~--~-~~~----~~-~~~~~~-r~l~G~ 139 (481)
T TIGR00879 70 SSLWGLVVSIFL-VGGFIGALFAGWLSDRFGRKKSLLIIALLFVIGAILMGLA--A-FAL----SV-EMLIVG-RVLLGI 139 (481)
T ss_pred hhHHHHHHHHHH-HHHHHHHHHhhHhhhhhhhHHHHHHHHHHHHHHHHHHHHh--c-ccc----ch-HHHHHH-HHHHHh
Confidence 556666655544 4478999999999999999998877666555554443221 1 100 00 111111 111112
Q ss_pred hhcccccccceeccccCccchhhhhhHHHHHHHHHHHHHHHHHh---HHHHHHcCcchhhHHHHHHHHHHHHHHHhhccC
Q 014616 311 FAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTF---LTVAELVGTGATFLILAGIAVLAVVFVILFVPE 387 (421)
Q Consensus 311 ~~~g~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~---~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~e 387 (421)
......+...++..|.+|+++|+.+.++.++...+|..+++.+. ....+..+|++.|.+.+...++. +...++.||
T Consensus 140 ~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~-~~~~~~l~~ 218 (481)
T TIGR00879 140 GVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFGSGKVSLNNTLGWRIPLGLQLIPAGLL-FLGLFFLPE 218 (481)
T ss_pred hhhHHHhHHHHHHHccCChhhhhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHH-HHHHhcCCC
Confidence 22233455667889999999999999999999999988887766 33334567777888755444444 344455687
Q ss_pred CC
Q 014616 388 TQ 389 (421)
Q Consensus 388 t~ 389 (421)
++
T Consensus 219 ~~ 220 (481)
T TIGR00879 219 SP 220 (481)
T ss_pred Ch
Confidence 64
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=9.3e-10 Score=105.82 Aligned_cols=126 Identities=21% Similarity=0.205 Sum_probs=108.2
Q ss_pred hhhHHHHhhhhhhhcccchhHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHhhhhhhhhhHHHHHhhcCCCCCccch
Q 014616 4 VGAIVGAASGGWINDAYGRKKATLLADVVFTAGAIIMAAAPDPYVLILGRLLVGLGVGIASVTAPVYIAEASPSEVRGGL 83 (421)
Q Consensus 4 ig~~~g~~~~g~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~s~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg~~ 83 (421)
++.+++.+..|+++||+|||+.+..+.++..++.+...+.++.+.+.+.+++.|++.+...+...+++.+..|+++||+.
T Consensus 269 l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~ 348 (408)
T PRK09874 269 VAALLSAPRLGKLGDRIGPEKILITALIFSVLLLIPMSFVQTPLQLGILRFLLGAADGALLPAVQTLLVYNSSNQIAGRI 348 (408)
T ss_pred HHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhHhhHHHHHHHHHHhCCcccceee
Confidence 45567778899999999999999999888888888888888888899999999999999999999999999999999999
Q ss_pred hchHHHHHHHHHHHHHHHhhhcccCCccchHHHHhhHHHHHHHHHHh
Q 014616 84 VSTNVLMITSGQFLSYLVNLAFTEVPGTWRWMLGVSAVPAIIQFVLM 130 (421)
Q Consensus 84 ~~~~~~~~~~g~~l~~~~~~~~~~~~~~Wr~~f~~~~~~~l~~~~~~ 130 (421)
.+.+......|..+++.+++.+.+.. +|++.|++.++..++..+..
T Consensus 349 ~~~~~~~~~~g~~~gp~~~G~l~~~~-g~~~~f~~~~~~~l~~~~~~ 394 (408)
T PRK09874 349 FSYNQSFRDIGNVTGPLMGAAISANY-GFRAVFLVTAGVVLFNAVYS 394 (408)
T ss_pred ehHHHHHHHHHHHhhHHHHHHHHhhc-chhHHHHHHHHHHHHHHHHH
Confidence 99888888899999988887766555 49999999887777655543
|
|
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.08 E-value=5.8e-09 Score=96.77 Aligned_cols=156 Identities=21% Similarity=0.225 Sum_probs=120.4
Q ss_pred hchHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHhhHHHHHHHHHHHHHHhhCCCCCCCcchh
Q 014616 218 YYSPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYG 297 (421)
Q Consensus 218 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 297 (421)
-.+|.+-++.|.+....+++.+....+ ..++.++-..+.||+.||+.++......+++.++..+.. .+.
T Consensus 34 gLLp~iA~dl~vs~~~aG~lis~yAl~-~ai~ap~l~~lt~r~~Rr~lLl~~l~lFi~~n~l~alAp----------~f~ 102 (394)
T COG2814 34 GLLPPIAADLGVSEGAAGQLITAYALG-VALGAPLLALLTGRLERRRLLLGLLALFIVSNLLSALAP----------SFA 102 (394)
T ss_pred hchHHHHHHcCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHhc----------cHH
Confidence 357888899999999988888776655 678888888999999999998877777777666654431 111
Q ss_pred HHHHHHHHHHHHHhhcccccccceeccccCccchhhhhhHHHHHHHHHHHHHHHHHhHHHHHHcCcchhhHHHHHHHHHH
Q 014616 298 WIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELVGTGATFLILAGIAVLA 377 (421)
Q Consensus 298 ~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 377 (421)
...+ .=+...+......++..+.+.++.|+++|+++.++..+-..++.+++...-.++.+..||..+|.+.+++.++.
T Consensus 103 ~Ll~--aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~GWR~~F~~ia~l~ll~ 180 (394)
T COG2814 103 VLLL--ARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQLFGWRATFLAIAVLALLA 180 (394)
T ss_pred HHHH--HHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 1111 11112222233346667788999999999999999999999999988888888999999999999999999999
Q ss_pred HHHHHhhcc
Q 014616 378 VVFVILFVP 386 (421)
Q Consensus 378 ~~~~~~~~~ 386 (421)
.+..+...|
T Consensus 181 ~~~~~~~lP 189 (394)
T COG2814 181 LLLLWKLLP 189 (394)
T ss_pred HHHHHHhCC
Confidence 888888888
|
|
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=4e-09 Score=100.58 Aligned_cols=159 Identities=16% Similarity=0.153 Sum_probs=107.7
Q ss_pred chHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHhhHHHHHHHHHHHHHHhhCCCCCCCcchhH
Q 014616 219 YSPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGW 298 (421)
Q Consensus 219 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 298 (421)
..|.+.++.|.+..+.+...+....+ ..++.++.|++.||+|||+.+..+.....++.++..+. .+ + +
T Consensus 25 ~l~~~~~~~g~s~~~~g~~~s~~~~~-~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~l~~~~------~~----~-~ 92 (382)
T PRK10091 25 VLTELAHDVGISIPAAGHMISYYALG-VVVGAPIIALFSSRYSLKHILLFLVALCVIGNAMFTLS------SS----Y-L 92 (382)
T ss_pred ChHHHHHHcCCCHHHHhHHHHHHHHH-HHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHHh------Cc----H-H
Confidence 45777788899888877766665544 78999999999999999999887766666555444331 11 1 1
Q ss_pred HHHHHHHHHHHHhhcccccccceeccccCccchhhhhhHHHHHHHHHHHHHHHHHhHHHHHHcCcchhhHHHHHHHHHHH
Q 014616 299 IAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELVGTGATFLILAGIAVLAV 378 (421)
Q Consensus 299 ~~~~~~~~~~~~~~~g~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 378 (421)
.....- ....+......+.......|.+|++.|+.+.+.......++..+++.....+.+..+|.+.|.+.+...++..
T Consensus 93 ~l~~~r-~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~ 171 (382)
T PRK10091 93 MLAIGR-LVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQEFSWRYTFLLIAVFNIAVL 171 (382)
T ss_pred HHHHHH-HHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhhhccHHHHHHHHHHHHHHHH
Confidence 111111 1111111111233345668889999999998988888888888887777777777889888888888776666
Q ss_pred HHHHhhccCCCC
Q 014616 379 VFVILFVPETQG 390 (421)
Q Consensus 379 ~~~~~~~~et~~ 390 (421)
+..+...||.++
T Consensus 172 ~~~~~~lp~~~~ 183 (382)
T PRK10091 172 ASIYFWVPDIRD 183 (382)
T ss_pred HHHHHhCCCCCc
Confidence 555566787643
|
|
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=99.07 E-value=8.6e-09 Score=99.40 Aligned_cols=123 Identities=20% Similarity=0.281 Sum_probs=85.4
Q ss_pred Hhhhhhhhcccc-----hhHHHHHHHHHHHHHHHHHHhcC----ChhHHHHHHHHHHhhhhhhhhhHHHHHhhcCCC--C
Q 014616 10 AASGGWINDAYG-----RKKATLLADVVFTAGAIIMAAAP----DPYVLILGRLLVGLGVGIASVTAPVYIAEASPS--E 78 (421)
Q Consensus 10 ~~~~g~l~dr~G-----rr~~~~~~~~l~~i~~~~~~~~~----s~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~--~ 78 (421)
-++.|.++|.+. ||+-++++.++..++....+..+ +.....+.=++.-+|.......+.+++.|...+ +
T Consensus 41 Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~ 120 (433)
T PF03092_consen 41 KPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPASESSAAIAVVLLFLASFGYAFADVAADALVVELARREPE 120 (433)
T ss_pred hhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCc
Confidence 468899999864 55555666666655555555433 456666677888899999999999999998743 3
Q ss_pred CccchhchHHHHHHHHHHHHHHHhhhcccCCccchHHHHhhHHHHHHHHHHhhcC
Q 014616 79 VRGGLVSTNVLMITSGQFLSYLVNLAFTEVPGTWRWMLGVSAVPAIIQFVLMLFM 133 (421)
Q Consensus 79 ~rg~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~Wr~~f~~~~~~~l~~~~~~~~~ 133 (421)
.||...+........|.+++..+++...... ++|+.|.+.++..++..+...++
T Consensus 121 ~~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~-~~~~~f~i~~~~~~l~~~~~~~~ 174 (433)
T PF03092_consen 121 SRGDLQSFVWGVRSVGSLVGSLLSGPLLDSF-GPQGVFLISAALPLLMLIVALFL 174 (433)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhhhhhcC-CCeEEehHHHHHHHHHHHHHHHh
Confidence 3566666767777788888877776665544 48888888876665555444443
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=99.06 E-value=3.3e-09 Score=100.90 Aligned_cols=159 Identities=21% Similarity=0.186 Sum_probs=110.1
Q ss_pred chHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHhhHHHHHHHHHHHHHHhhCCCCCCCcchhH
Q 014616 219 YSPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGW 298 (421)
Q Consensus 219 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 298 (421)
..|.+.++.|.+..+.+........ ...++.++.|+++||+|||+.+..+.....++....... . + + +
T Consensus 13 ~~~~~~~~~~~s~~~~~~~~~~~~~-~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~---~---~----~-~ 80 (377)
T PRK11102 13 ALPVIAADFGVSAGSVQMTLSAYIL-GFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALA---Q---T----I-D 80 (377)
T ss_pred cHHHHHHHhCCCHHHHHHHHHHHHH-HHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHH---c---c----H-H
Confidence 4566777888888777776655544 468899999999999999998877666555555444321 0 0 1 1
Q ss_pred HHHHHHHHHHHHhhcccccccceeccccCccchhhhhhHHHHHHHHHHHHHHHHHhHHHHHHcCcchhhHHHHHHHHHHH
Q 014616 299 IAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELVGTGATFLILAGIAVLAV 378 (421)
Q Consensus 299 ~~~~~~~~~~~~~~~g~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 378 (421)
...... +...+......+...++..|.+|++.|++..++.+....++..+++...+.+.+..+|...|++.+...++..
T Consensus 81 ~~~~~~-~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 159 (377)
T PRK11102 81 QLIYMR-FLHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFSWHAIFWVLALAAILAA 159 (377)
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHH
Confidence 111111 1111222222344556778999999999999999999999999988888888888888888888888777766
Q ss_pred HHHHhhccCCCC
Q 014616 379 VFVILFVPETQG 390 (421)
Q Consensus 379 ~~~~~~~~et~~ 390 (421)
+...+..||+++
T Consensus 160 ~~~~~~~~~~~~ 171 (377)
T PRK11102 160 ALVFFFIPETLP 171 (377)
T ss_pred HHHHHhCCccCc
Confidence 666566677643
|
|
| >KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.8e-08 Score=99.74 Aligned_cols=261 Identities=16% Similarity=0.226 Sum_probs=164.0
Q ss_pred hhhHHHHhhhhhhhcccchhHHHHHHHHHHHHHHHHHHhc--------------------C-------------------
Q 014616 4 VGAIVGAASGGWINDAYGRKKATLLADVVFTAGAIIMAAA--------------------P------------------- 44 (421)
Q Consensus 4 ig~~~g~~~~g~l~dr~Grr~~~~~~~~l~~i~~~~~~~~--------------------~------------------- 44 (421)
+|..+...+....+.|.-|=+.+-++.++++++++++++- +
T Consensus 143 ig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~lgsll~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~ 222 (735)
T KOG3626|consen 143 IGNLLLIIFVSYFGSRGHRPRWIGIGLVLMGLGSLLFALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPS 222 (735)
T ss_pred cchhhhhHhHHHhccccCccceeeechhHHHHHHHHHhChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCC
Confidence 5667777788888889888889999999999999987651 0
Q ss_pred --------C----h-hHHHHHHHHHHhhhhhhhhhHHHHHhhcCCCCCccchhchHHHHHHHHHHHHHHHhhhcccC---
Q 014616 45 --------D----P-YVLILGRLLVGLGVGIASVTAPVYIAEASPSEVRGGLVSTNVLMITSGQFLSYLVNLAFTEV--- 108 (421)
Q Consensus 45 --------s----~-~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg~~~~~~~~~~~~g~~l~~~~~~~~~~~--- 108 (421)
. + ..++.+.++.|+|....++....|+=|...+++-..+++.......+|+++|.+++.+....
T Consensus 223 ~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~tlGisYiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD 302 (735)
T KOG3626|consen 223 PENSKREKESTSYPFLLFFLGQLLLGIGATPIFTLGISYIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVD 302 (735)
T ss_pred CCcccccccCCchhHHHHHHHHHHhhcCCCCCccCCCccccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeec
Confidence 0 2 25677899999999999999999999999999888999999999999999999888764321
Q ss_pred ---------------CccchHHHHhhHHHHHHHHHHhhcCCcChHHHHhcCCHHHHHHHHHHhcChhhhHHHHHHHHHHH
Q 014616 109 ---------------PGTWRWMLGVSAVPAIIQFVLMLFMPESPRWLFMKSDKEKAILVLSKIYDIARLEDEIDHLSAAA 173 (421)
Q Consensus 109 ---------------~~~Wr~~f~~~~~~~l~~~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (421)
.|.|..-|++.+...++..+..+++|...+-..++. ..+. ....+. +++ ..+...
T Consensus 303 ~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~~~a~p~f~fPk~lp~~~~~~-~~~~------~~~~k~-~~~--~~~~~~ 372 (735)
T KOG3626|consen 303 FGLSPIGITPTDPRWIGAWWLGFLICGALLLFSAVPLFFFPKELPKSQKRK-RARD------LHVLKT-ESG--GAKSDK 372 (735)
T ss_pred cccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhCcccCccccccc-hhhh------hccccc-ccc--cccCCc
Confidence 123666777777777777777777765533111000 0000 000000 000 000000
Q ss_pred HH-HHhhcccccHHHhhcchhHHHHHHHHHHHHHHHhhcCcceehhchHHHHH-HcCCCChHHHHHHHHHHHHHHHHHHH
Q 014616 174 EE-ELRKKKTVRYLDVFKSKEIRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQ-MAGFQSNQLALLLSLAVAGTNAVGTI 251 (421)
Q Consensus 174 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~g~~ 251 (421)
+. +.-++-+...+++++||.+....+... .....+.....|.|-+++ +++.+...+..+.......+..+|.+
T Consensus 373 ~~~~~ikdfp~s~~~ll~N~if~~~~l~~~-----~~~~~~~G~~tFlPKyLE~Qfg~sas~An~l~G~i~vp~~~~Gi~ 447 (735)
T KOG3626|consen 373 TFGKKIKDFPKSIKRLLSNPIFMLVVLASV-----IESLAITGYITFLPKYLETQFGISASLANILTGSIGVPAAAVGIF 447 (735)
T ss_pred chhhhHHHHHHHHHHHhcCchHHHHHHHHH-----HHHHHHhhHHHhhHHHHHHHcCCCHHHHHHHhhhhhhhhhhhhhh
Confidence 00 000011234567788886543333221 112222333346777775 68998887777665666666789999
Q ss_pred HHHHHHhhcC--ChhHHHHhhHHHHHHHHH
Q 014616 252 VGIYLIDHFG--RKKLALSSLAGVIISLVL 279 (421)
Q Consensus 252 ~~g~l~dr~g--rr~~~~~~~~~~~~~~~~ 279 (421)
++|++++|+. .|........+..++++.
T Consensus 448 lGG~iikkfkl~~r~~a~~~~~~~~l~l~~ 477 (735)
T KOG3626|consen 448 LGGLIIKKFKLSARGAAKFVIVCSVLSLLF 477 (735)
T ss_pred ccceeeeeecccHHHHHHHHHHHHHHHHHH
Confidence 9999999874 354444434444444433
|
|
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=99.06 E-value=4.9e-09 Score=98.89 Aligned_cols=157 Identities=13% Similarity=0.115 Sum_probs=103.4
Q ss_pred hchHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHhhHHHHHHHHHHHHHHhhCCCCCCCcchh
Q 014616 218 YYSPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYG 297 (421)
Q Consensus 218 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 297 (421)
...|.+..+.+.+..+.+........ ...++.++.|+++||+|||+.+..+.....++............ . ..
T Consensus 20 ~~~~~~~~~~~~s~~~~g~~~~~~~~-~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~-~----~~- 92 (365)
T TIGR00900 20 VALPLYVLAGTGSASVLSLAALAGML-PYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLPFVALLGG-L----NI- 92 (365)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHH-HHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHcCC-C----cH-
Confidence 34566677778877777766665544 46888999999999999999887666554444444333211110 0 11
Q ss_pred HHHHHHHHHHHHHhhcccccccceeccccCccchhhhhhHHHHHHHHHHHHHHHHHhHHHHHHcCcchhhHHHHHHHHHH
Q 014616 298 WIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELVGTGATFLILAGIAVLA 377 (421)
Q Consensus 298 ~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 377 (421)
+.......+ .........+...++..|.+|++.|++..+..+....++..+++.+.+.+.+..+|...|++.+...++.
T Consensus 93 ~~~~~~~~l-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~ 171 (365)
T TIGR00900 93 WQVYVLAGI-LAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYATLGIKWAIWVDAVGFAIS 171 (365)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 111111111 1111222235556788999999999999999999999999999988888888888888887776665555
Q ss_pred HHHHH
Q 014616 378 VVFVI 382 (421)
Q Consensus 378 ~~~~~ 382 (421)
.+..+
T Consensus 172 ~~~~~ 176 (365)
T TIGR00900 172 ALLIV 176 (365)
T ss_pred HHHHH
Confidence 44333
|
|
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.2e-09 Score=102.32 Aligned_cols=128 Identities=26% Similarity=0.389 Sum_probs=114.4
Q ss_pred hhhhHHHHhhhhhhhcccchhH-HHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHhhhhhhhhhHHHHHhhcCCCCCcc
Q 014616 3 LVGAIVGAASGGWINDAYGRKK-ATLLADVVFTAGAIIMAAAPDPYVLILGRLLVGLGVGIASVTAPVYIAEASPSEVRG 81 (421)
Q Consensus 3 ~ig~~~g~~~~g~l~dr~Grr~-~~~~~~~l~~i~~~~~~~~~s~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg 81 (421)
.++..++.++.+++.||+|||+ .+..+.++..++.....+.++.+.+.+..++.|++.+...+....++.|..|+|+|+
T Consensus 221 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 300 (352)
T cd06174 221 GLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPSLALLLVALLLLGFGLGFAFPALLTLASELAPPEARG 300 (352)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhccchhHHHHHHhhcCHHHHH
Confidence 4678899999999999999999 999999999999999999999999999999999999999999999999999999999
Q ss_pred chhchHHHHHHHHHHHHHHHhhhcccCCccchHHHHhhHHHHHHHHHHhh
Q 014616 82 GLVSTNVLMITSGQFLSYLVNLAFTEVPGTWRWMLGVSAVPAIIQFVLML 131 (421)
Q Consensus 82 ~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~Wr~~f~~~~~~~l~~~~~~~ 131 (421)
+..+........|..+++.+.....+.. +|++.+++.++..++..+...
T Consensus 301 ~~~~~~~~~~~~~~~i~~~i~g~l~~~~-~~~~~~~~~~~~~~i~~i~~~ 349 (352)
T cd06174 301 TASGLFNTFGSLGGALGPLLAGLLLDTG-GYGGVFLILAALALLAALLLL 349 (352)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccc-CcchHHHHHHHHHHHHHHHhe
Confidence 9999999999999999888887766544 599999998887777665543
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=99.06 E-value=5.6e-10 Score=104.84 Aligned_cols=160 Identities=23% Similarity=0.352 Sum_probs=109.1
Q ss_pred chH-HHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHhhHHHHHHHHHHHHHHhhCCCCCCCcchh
Q 014616 219 YSP-TIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYG 297 (421)
Q Consensus 219 ~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 297 (421)
..| .+.++.|.+..+.+........ ...++.++.|+++||+|||+.+..+.....++.....+. .+ .
T Consensus 18 ~~~~~~~~~~~~s~~~~~~~~~~~~~-~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~------~~----~- 85 (352)
T PF07690_consen 18 ALPLYLAEELGLSPSQIGLLFSAFFL-GSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLLAFA------SN----F- 85 (352)
T ss_dssp HHH-HHHCCSTTTSHCHHHHHHHHHH-HHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHH------CC----H-
T ss_pred HHHHHHHHccCCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHhhhh------hh----H-
Confidence 345 5556778888888777666554 478999999999999999998877776666663332221 11 1
Q ss_pred HHHHHHHHHHHHHhhcccccccceeccccCccchhhhhhHHHHHHHHHHHHHHHHHhHHHHHHcCcchhhHHHHHHHHHH
Q 014616 298 WIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELVGTGATFLILAGIAVLA 377 (421)
Q Consensus 298 ~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 377 (421)
+..... .+..........+....+..|.+|+++|+...+..+....++..+++.+.+.+.+..+|...|++.+...++.
T Consensus 86 ~~~~~~-~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~ 164 (352)
T PF07690_consen 86 WLLLIA-RFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYFGWRWAFLISAILSLIA 164 (352)
T ss_dssp HHHHHH-HHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHHCCHHHHHHHHHHHH
T ss_pred HHHhhh-ccccccccccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhccccccccccccchhhhh
Confidence 111111 1112222223346666788999999999999999999999999999888887777778888999999988888
Q ss_pred HHHHHhhccCCCCC
Q 014616 378 VVFVILFVPETQGL 391 (421)
Q Consensus 378 ~~~~~~~~~et~~~ 391 (421)
.++...+.++++.+
T Consensus 165 ~il~~~~~~~~~~~ 178 (352)
T PF07690_consen 165 AILFILFLPEPPPP 178 (352)
T ss_dssp HHHHHCCC---STT
T ss_pred hhhHhhhhhhcccc
Confidence 76544555544433
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=9.1e-10 Score=105.37 Aligned_cols=127 Identities=19% Similarity=0.261 Sum_probs=109.3
Q ss_pred hhhhHHHHhhhhhhhcccchhHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHhhhhhhhhhHHHHHhhcCCCCCccc
Q 014616 3 LVGAIVGAASGGWINDAYGRKKATLLADVVFTAGAIIMAAAPDPYVLILGRLLVGLGVGIASVTAPVYIAEASPSEVRGG 82 (421)
Q Consensus 3 ~ig~~~g~~~~g~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~s~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg~ 82 (421)
.++.++++++.|++.||+|||+.+..+..+.+++..+..+.++...+++.+++.|++.+...+.....+.|..|+++||.
T Consensus 259 ~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~ 338 (392)
T PRK12382 259 GGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLWLAPTAWVALAGAALTGAGCSLIFPALGVEVVKRVPSQVRGT 338 (392)
T ss_pred HHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCHHHHHH
Confidence 35667889999999999999999999999999988888888888888889999999999988888888999999999999
Q ss_pred hhchHHHHHHHHHHHHHHHhhhcccCCccchHHHHhhHHHHHHHHHHh
Q 014616 83 LVSTNVLMITSGQFLSYLVNLAFTEVPGTWRWMLGVSAVPAIIQFVLM 130 (421)
Q Consensus 83 ~~~~~~~~~~~g~~l~~~~~~~~~~~~~~Wr~~f~~~~~~~l~~~~~~ 130 (421)
..+........|..+++.+...+.+.. +|++.|.+.+...++..+..
T Consensus 339 ~~g~~~~~~~~g~~ig~~~~g~l~~~~-g~~~~~~~~~~~~~~~~~~~ 385 (392)
T PRK12382 339 ALGGYAAFQDIAYGVSGPLAGMLATSF-GYPSVFLAGAISAVLGIIVT 385 (392)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHHHHHHH
Confidence 999998888889888888877766555 49999999887776655543
|
|
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=99.05 E-value=5.4e-09 Score=101.96 Aligned_cols=158 Identities=16% Similarity=0.156 Sum_probs=102.4
Q ss_pred ehhchHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHhhHHHHHHHHHHHHHHhhCCCCCCCcc
Q 014616 216 VMYYSPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGV 295 (421)
Q Consensus 216 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 295 (421)
...+.|.+.++.|.+..+.+...+..... ..++.++.|+++||++||+.++.+.....++.+...+. . +
T Consensus 38 ~~~~~~~i~~~~g~s~~~~~~~~s~~~~~-~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~--~----~---- 106 (455)
T TIGR00892 38 VTVFFKELQQIFQATYSETAWISSIMLAV-LYAGGPISSILVNRFGCRPVVIAGGLLASLGMILASFS--S----N---- 106 (455)
T ss_pred hhhhHHHHHHHhCcchhHHHHHHHHHHHH-HHHhhHHHHHHHHHcCchHHHHhhHHHHHHHHHHHHHh--h----h----
Confidence 34456777888999888877766665443 56777889999999999998876665555444333221 0 0
Q ss_pred hhHHHHHHHHHHHHHhhcccccccceeccccCccchhhhhhHHHHHHHHHHHHHHHHHhHHHHHHcCcchhhHHHHHHHH
Q 014616 296 YGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELVGTGATFLILAGIAV 375 (421)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 375 (421)
. +.......+...+......+...+...+.+| +.|+++.++.++...++..+++...+.+.+..||.++|++.+.+.+
T Consensus 107 ~-~~l~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~r~~a~g~~~~~~~~g~~~~~~l~~~l~~~~gwr~~f~~~~~~~~ 184 (455)
T TIGR00892 107 V-IELYLTAGFITGLGLAFNFQPSLTMLGKYFY-RRRPLANGLAMAGSPVFLSTLAPLNQYLFESFGWRGSFLILGGLLL 184 (455)
T ss_pred H-HHHHHHHHHHHHhcchhhhhHHHHHHHHHHH-hhHHHHHHHHHhcccHHHHHHHHHHHHHHHHhChHHHHHHHHHHHH
Confidence 0 1111111011111111111333345567776 6899999999999999998888888888888899999999888777
Q ss_pred HHHHHHHhhcc
Q 014616 376 LAVVFVILFVP 386 (421)
Q Consensus 376 ~~~~~~~~~~~ 386 (421)
+..+..+++.+
T Consensus 185 ~~~v~~~~~~~ 195 (455)
T TIGR00892 185 HCCVCGALMRP 195 (455)
T ss_pred HHHHHHHHhCC
Confidence 66554444434
|
|
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=8.1e-09 Score=101.36 Aligned_cols=161 Identities=13% Similarity=0.109 Sum_probs=108.4
Q ss_pred eehhchHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHhhHHHHHHHHHHHHHHhhCCCCCCCc
Q 014616 215 TVMYYSPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSG 294 (421)
Q Consensus 215 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 294 (421)
......|.+.++.|.+..+.+..... +.....++.++.|+++||+|||+..+.+.....++.+.... . .+
T Consensus 28 ~~~~~~p~~~~~~g~s~~~~~~~~~~-~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~---~---~~--- 97 (471)
T PRK10504 28 IVNTALPSMAQSLGESPLHMHMVIVS-YVLTVAVMLPASGWLADRVGVRNIFFTAIVLFTLGSLFCAL---S---GT--- 97 (471)
T ss_pred HHHHHHHHHHHHhCcCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHH---h---CC---
Confidence 33456788888899987776665544 34446788999999999999999877655444443332221 1 10
Q ss_pred chhHHHHHHHHHHHHHhhcccccccceeccccCccchhhhhhHHHHHHHHHHHHHHHHHhHHHHHHcCcchhhHHHHHHH
Q 014616 295 VYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELVGTGATFLILAGIA 374 (421)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 374 (421)
. +..+.. .....+......+...+...|.+|++.|+.+.+..+....++..+++.+.+.+.+..+|++.|.+.....
T Consensus 98 -~-~~l~~~-~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~~gw~~~f~~~~~~~ 174 (471)
T PRK10504 98 -L-NELLLA-RVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEYASWHWIFLINIPVG 174 (471)
T ss_pred -H-HHHHHH-HHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhccHHHHHHHHHHHH
Confidence 1 111111 1111122222345566777899999999999999999999999999988888888889888888877776
Q ss_pred HHHHHHHHhhccCC
Q 014616 375 VLAVVFVILFVPET 388 (421)
Q Consensus 375 ~~~~~~~~~~~~et 388 (421)
.+..+......|+.
T Consensus 175 ~l~~~~~~~~~~~~ 188 (471)
T PRK10504 175 IIGAIATLMLMPNY 188 (471)
T ss_pred HHHHHHHHHhCCCc
Confidence 66665555555554
|
|
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=5.1e-09 Score=103.35 Aligned_cols=162 Identities=18% Similarity=0.115 Sum_probs=109.1
Q ss_pred ehhchHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHhhHHHHHHHHHHHHHHhhCCCCCCCcc
Q 014616 216 VMYYSPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGV 295 (421)
Q Consensus 216 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 295 (421)
+..-.|.+.++.|.+..+.++..+... .....+.+..|+++||+|||+.+..+.....++.+..... .+
T Consensus 25 v~~a~p~i~~~l~~s~~~~~~~~~~~~-l~~~~~~~~~G~l~D~~Grk~~l~~~~~~~~~~~~~~~~a------~~---- 93 (495)
T PRK14995 25 LHVAAPTLSMTLGASGNELLWIIDIYS-LVMAGMVLPMGALGDRIGFKRLLMLGGTLFGLASLAAAFS------PT---- 93 (495)
T ss_pred HHHHHHHHHHHhCCCHhHHHHHHHHHH-HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHc------CC----
Confidence 344568888888887777666665544 3456778889999999999999887766655554443321 11
Q ss_pred hhHHHHHHHHHHHHHhhcccccccceeccccC-ccchhhhhhHHHHHHHHHHHHHHHHHhHHHHHHcCcchhhHHHHHHH
Q 014616 296 YGWIAVIGLALYIAFFAPGMGPVPWTLNSEVY-PEQYRGICGGMSATVNWISNLIVAQTFLTVAELVGTGATFLILAGIA 374 (421)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~-p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 374 (421)
. +..+.+-. .......+..+.......+.+ |++.|+++.|+..+...++..+++.+.+.+.+..+|++.|++...+.
T Consensus 94 ~-~~li~~r~-l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~~gwr~~f~i~~~~~ 171 (495)
T PRK14995 94 A-SWLIATRA-LLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILLEHFYWGSVFLINVPIV 171 (495)
T ss_pred H-HHHHHHHH-HHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHH
Confidence 1 11111111 111111122333334444554 77899999999999999999999999999999999999999888777
Q ss_pred HHHHHHHHhhccCCCC
Q 014616 375 VLAVVFVILFVPETQG 390 (421)
Q Consensus 375 ~~~~~~~~~~~~et~~ 390 (421)
++..++..++.||.++
T Consensus 172 ~~~~~l~~~~l~~~~~ 187 (495)
T PRK14995 172 LVVMGLTARYVPRQAG 187 (495)
T ss_pred HHHHHHHHHhCCCCCC
Confidence 7776666666777544
|
|
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.1e-08 Score=98.06 Aligned_cols=159 Identities=14% Similarity=0.129 Sum_probs=105.0
Q ss_pred hHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHhhHHHHHHHHHHHHHHhhCCCCCCCcchhHH
Q 014616 220 SPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGWI 299 (421)
Q Consensus 220 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 299 (421)
.|.+.++.|.+..+.+........ ...++.++.|+++||+|||+.+..+.....++....... . + + +.
T Consensus 31 ~~~i~~~~~~s~~~~~~~~~~~~~-~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~---~---~----~-~~ 98 (394)
T PRK11652 31 IADMARDLNVREGAVQAVMAAYLL-TYGLSQLFYGPLSDRVGRRPVILVGMSIFILGTLVALFA---H---S----L-TV 98 (394)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHH-HHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHH---c---c----H-HH
Confidence 566778889988887776665544 478899999999999999998877665555544433221 0 0 1 11
Q ss_pred HHHHHHHHHHHhhcccccccceeccccCccchhhhhhHHHHHHHHHHHHHHHHHhHHHHHHcCcchhhHHHHHHHHHHHH
Q 014616 300 AVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELVGTGATFLILAGIAVLAVV 379 (421)
Q Consensus 300 ~~~~~~~~~~~~~~g~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 379 (421)
..... +...+......+.......|.+|.+.|+.+.+..+....++..+++.+.+.+.+..+|...|.+.+...++...
T Consensus 99 l~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~f~~~~~~~~~~~~ 177 (394)
T PRK11652 99 LIAAS-AIQGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTLFGWRACYLFLLLLGAGVTF 177 (394)
T ss_pred HHHHH-HHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHH
Confidence 11111 11111111112334456678888888998888888888888888888887777878888888888777666555
Q ss_pred HHHhhccCCCCC
Q 014616 380 FVILFVPETQGL 391 (421)
Q Consensus 380 ~~~~~~~et~~~ 391 (421)
...++.||++..
T Consensus 178 ~~~~~~~~~~~~ 189 (394)
T PRK11652 178 SMARWMPETRPA 189 (394)
T ss_pred HHHHhCCccCcc
Confidence 555666876543
|
|
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.2e-08 Score=98.90 Aligned_cols=158 Identities=15% Similarity=0.061 Sum_probs=103.3
Q ss_pred cceehhchHHHHH-HcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CChhHHHHhhHHHHHHHHHHHHHHhhCCCC
Q 014616 213 INTVMYYSPTIVQ-MAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHF-GRKKLALSSLAGVIISLVLLSWAFISGSSA 290 (421)
Q Consensus 213 ~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~-grr~~~~~~~~~~~~~~~~l~~~~~~~~~~ 290 (421)
++....+.|.+++ ..|++..+.+..... +.....++++++|+++||+ |||+.+..+.....++..++... ..
T Consensus 25 ~Yg~~~~L~~yL~~~lgls~~~a~~i~~~-~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg~lll~~~----~~- 98 (493)
T PRK15462 25 FYGMRALLILYLTNQLKYDDNHAYELFSA-YCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIGHVVLGAS----EI- 98 (493)
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHh----hc-
Confidence 3444456677665 468887776555444 4455678899999999999 99998877766655554433210 00
Q ss_pred CCCcchhHHHHHHHHHHHHHhhcccccccceeccccCccc--hhhhhhHHHHHHHHHHHHHHHHHhHHHHHHcCcchhhH
Q 014616 291 SSSGVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQ--YRGICGGMSATVNWISNLIVAQTFLTVAELVGTGATFL 368 (421)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~p~~--~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 368 (421)
. ... ...+.... ........+...++.+|.+|++ .|+.+.++.++..++|+.++|.+.+.+.+..||+..|.
T Consensus 99 ~----~~~-~~l~l~li-~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~Gw~~~F~ 172 (493)
T PRK15462 99 H----PSF-LYLSLAII-VCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEEYSWAMGFG 172 (493)
T ss_pred c----hhH-HHHHHHHH-HHhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhhhChHHHHH
Confidence 0 001 11111111 1111122355567789999986 69999999999999999999999999998889998888
Q ss_pred HHHHHHHHHHHHHH
Q 014616 369 ILAGIAVLAVVFVI 382 (421)
Q Consensus 369 ~~~~~~~~~~~~~~ 382 (421)
..+...+++.+.+.
T Consensus 173 iaaigm~l~li~~~ 186 (493)
T PRK15462 173 LAAVGMIAGLVIFL 186 (493)
T ss_pred HHHHHHHHHHHHHH
Confidence 86665555444443
|
|
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.5e-08 Score=97.01 Aligned_cols=153 Identities=10% Similarity=0.070 Sum_probs=99.8
Q ss_pred ehhchHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHhhHHHHHHHHHHHHHHhhCCCCCCCcc
Q 014616 216 VMYYSPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGV 295 (421)
Q Consensus 216 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 295 (421)
.....|.+.++.|.+..+.+...+.... ...++.++.|++.||+|||+.+..+.....++....... . .
T Consensus 26 ~g~~~~~i~~~~~~s~~~~g~~~s~~~~-~~~i~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~l~~~~------~----~ 94 (394)
T PRK03699 26 TGMVMGPIAEYFNLPVSSMSNTFTFLNA-GILISIFLNAWLMEIIPLKRQLIFGFALMILAVAGLMFS------H----S 94 (394)
T ss_pred HhhhhHHHHHHhCCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHc------c----h
Confidence 3345677788889988887777666554 478899999999999999998776665554444433221 0 0
Q ss_pred hhHHHHHHHHHHHHHhhcccccccceeccccCccchhhhhhHHHHHHHHHHHHHHHHHhHHHHH-HcCcchhhHHHHHHH
Q 014616 296 YGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAE-LVGTGATFLILAGIA 374 (421)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~ 374 (421)
+ +.......+ .........+....+..|.+|++.|+.+.+..++...+++.+++.....+.+ ..+|.+.|.+.+...
T Consensus 95 ~-~~~~~~~~l-~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~gw~~~f~~~~~~~ 172 (394)
T PRK03699 95 L-ALFSIAMFV-LGVVSGITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIAAYLLARSIEWYWVYACIGLVY 172 (394)
T ss_pred H-HHHHHHHHH-HHHhhHhhccchhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 1 111111111 1111111234455677899999999999888887777888888777666544 468888888877766
Q ss_pred HHHHHHH
Q 014616 375 VLAVVFV 381 (421)
Q Consensus 375 ~~~~~~~ 381 (421)
++..+..
T Consensus 173 ~~~~~~~ 179 (394)
T PRK03699 173 VAIFILT 179 (394)
T ss_pred HHHHHHH
Confidence 6554433
|
|
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.01 E-value=1e-08 Score=101.37 Aligned_cols=159 Identities=21% Similarity=0.214 Sum_probs=104.1
Q ss_pred hhchHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHhhHHHHHHHHHHHHHHhhCCCCCCCcch
Q 014616 217 MYYSPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVY 296 (421)
Q Consensus 217 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 296 (421)
....|.+.++.|.+..+.+........ ...++.++.|+++||+|||+.+..+.....++.+.+.... .+
T Consensus 40 ~~~~~~i~~~~~~s~~~~~~~~~~~~~-~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~----------~~ 108 (496)
T PRK03893 40 TLVLTEVQGEFGLTTVQAASLISAAFI-SRWFGGLLLGAMGDRYGRRLAMVISIVLFSVGTLACGFAP----------GY 108 (496)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHh----------HH
Confidence 345577778889988777776666554 4678899999999999999988766655555544443210 01
Q ss_pred hHHHHHHHHHHHHHhhcccccccceeccccCccchhhhhhHHHHHHHHHHHHHHHHHhHHHHHHcCcchhhHHHHHHHHH
Q 014616 297 GWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELVGTGATFLILAGIAVL 376 (421)
Q Consensus 297 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 376 (421)
+.... ..+...+...+..+....+..|.+|++.|+.+.+..++...+++.+++.+...+.+..+|.+.|.+.....+
T Consensus 109 -~~l~~-~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~f~~~~~~~~- 185 (496)
T PRK03893 109 -WTLFI-ARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYSLVVPVWGWRALFFIGILPII- 185 (496)
T ss_pred -HHHHH-HHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHH-
Confidence 11111 111222222233445556788999999999999999999999999999888888887888877765333222
Q ss_pred HHHHHHhhccCCC
Q 014616 377 AVVFVILFVPETQ 389 (421)
Q Consensus 377 ~~~~~~~~~~et~ 389 (421)
.........||++
T Consensus 186 ~~~~~~~~~p~~~ 198 (496)
T PRK03893 186 FALWLRKNLPEAE 198 (496)
T ss_pred HHHHHHHhCCCch
Confidence 2222333446553
|
|
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=7e-09 Score=100.12 Aligned_cols=164 Identities=17% Similarity=0.139 Sum_probs=101.3
Q ss_pred hhchHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHhhHHHHHHHHHHHHHHhhCCCCCCCcch
Q 014616 217 MYYSPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVY 296 (421)
Q Consensus 217 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 296 (421)
....|.+.++.+.+..+.+...... .....++.++.|+++||++||+.+..+.....++...+........ . .+
T Consensus 37 ~~~~~~~~~~~~~s~~~~g~~~~~~-~l~~~~~~~~~G~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~-~----~~ 110 (417)
T PRK10489 37 GVAVPVQIQMMTGSTLQVGLSVTLT-GGAMFIGLMVGGVLADRYDRKKLILLARGTCGLGFIGLALNAFLPE-P----SL 110 (417)
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHH-HHHHHHHHHhhHHHhhhcCCceEEEehHHHHHHHHHHHHHHHHcCC-C----cH
Confidence 3456777777777766666655554 4457889999999999999999877655444444333322111110 0 11
Q ss_pred hHHHHHHHHHHHHHhhcccccccceeccccCccchhhhhhHHHHHHHHHHHHHHHHHhHHHHHHcCcchhhHHHHHHHHH
Q 014616 297 GWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELVGTGATFLILAGIAVL 376 (421)
Q Consensus 297 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 376 (421)
... .... +..........+...++..|.+|+++|+++.++.++...++..+++.+.+.+.+..++.+.+++.+...++
T Consensus 111 ~~l-~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~~~~~~~~~~~~~~~~~~ 188 (417)
T PRK10489 111 LAI-YLLG-LWDGFFGSLGVTALLAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLLIAAGGVAWNYGLAAAGTFI 188 (417)
T ss_pred HHH-HHHH-HHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 111 1111 11111111112334566789999999999999999899999989888888888877887777766655554
Q ss_pred HHHHHHhhccCCC
Q 014616 377 AVVFVILFVPETQ 389 (421)
Q Consensus 377 ~~~~~~~~~~et~ 389 (421)
..+ .....||++
T Consensus 189 ~~~-~~~~l~~~~ 200 (417)
T PRK10489 189 TLL-PLLRLPALP 200 (417)
T ss_pred HHH-HHHhCCCCC
Confidence 433 334456653
|
|
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=99.00 E-value=5.2e-11 Score=116.96 Aligned_cols=245 Identities=17% Similarity=0.270 Sum_probs=3.0
Q ss_pred hhhHHHHhhhhhhhcccchhHHHHHHHHHHHHHHHHHHhcC---------------------------------------
Q 014616 4 VGAIVGAASGGWINDAYGRKKATLLADVVFTAGAIIMAAAP--------------------------------------- 44 (421)
Q Consensus 4 ig~~~g~~~~g~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~--------------------------------------- 44 (421)
+|.++..++..++++|..|=+.+-++.++++++++++++=+
T Consensus 49 i~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~l~~lPhf~~~~y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~ 128 (539)
T PF03137_consen 49 IGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSLLFALPHFLSGPYSYEEASNSNGNSSISSNLCDSSSSSQASSDCQD 128 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHHHHHhccHhhcCCCccccccccccccccccccccccccccccCcccc
Confidence 56677778888888887777888899999999988765300
Q ss_pred -----------ChhHHHHHHHHHHhhhhhhhhhHHHHHhhcCCCCCccchhchHHHHHHHHHHHHHHHhhhcccC-----
Q 014616 45 -----------DPYVLILGRLLVGLGVGIASVTAPVYIAEASPSEVRGGLVSTNVLMITSGQFLSYLVNLAFTEV----- 108 (421)
Q Consensus 45 -----------s~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg~~~~~~~~~~~~g~~l~~~~~~~~~~~----- 108 (421)
-+..++++.++.|+|....++...+|+=|..++++-+.+++.......+|+.+|.+++......
T Consensus 129 ~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~~splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~ 208 (539)
T PF03137_consen 129 CCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDDNVSKKNSPLYIGILYAMSILGPALGFLLGSFCLRIYVDFP 208 (539)
T ss_dssp -----------------------SSS------------------------------------------------------
T ss_pred ccccccccchHHHHHHHHHHHHHhccccCCccceeeeeccccccccCccchhhhhHHhhccHHHHHHHHHHHHhceeCCc
Confidence 0357788999999999999999999999999999999999999999999999988888654321
Q ss_pred ----------------CccchHHHHhhHHHHHHHHHHhhcCCcC-hHHHHhcCCHHHHHHHHHHhcChhhhHHHHHHHHH
Q 014616 109 ----------------PGTWRWMLGVSAVPAIIQFVLMLFMPES-PRWLFMKSDKEKAILVLSKIYDIARLEDEIDHLSA 171 (421)
Q Consensus 109 ----------------~~~Wr~~f~~~~~~~l~~~~~~~~~~es-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (421)
.|.|-.-|++.+...++..+..+++|++ |.....+++++..... ..+...++..+
T Consensus 209 ~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~~l~aipl~~FPk~lp~~~~~~~~~~~~~~~--------~~~~~~~~~~~ 280 (539)
T PF03137_consen 209 KVPPDGVGITPSDPRWVGAWWLGFLICGILLFLSAIPLFFFPKKLPGTSERQEEKESSERK--------EEDSDKDSFKD 280 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCCcccccchhhhhhcc--------hhhhhhhcccc
Confidence 1125455566665555555555555544 2220000100000000 00000000000
Q ss_pred HHHH----HHhhcccccHHHhhcchhHHHHHHHHHHHHHHHhhcCcceehhchHHHHH-HcCCCChHHHHHHHHHHHHHH
Q 014616 172 AAEE----ELRKKKTVRYLDVFKSKEIRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQ-MAGFQSNQLALLLSLAVAGTN 246 (421)
Q Consensus 172 ~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~ 246 (421)
.++. +.-+.-+...+++++||.+-...+... ...........|.|-++| +++.+....+.+.........
T Consensus 281 ~~~~~~~~~~~~df~~~l~~Ll~Np~f~~~~la~~-----~~~~~~~G~~tF~pKylE~QF~~sas~A~~l~G~v~ip~~ 355 (539)
T PF03137_consen 281 PKSKKSFGKSIKDFPKALKRLLTNPVFMCLILAGV-----FESFIVSGFATFLPKYLESQFGLSASQASLLTGIVSIPGA 355 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccchhhhhhhHHHHHHHHhcChHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhhhhcchh
Confidence 0000 000111234567788876544333221 122233344456777776 578887776666655555567
Q ss_pred HHHHHHHHHHHhhcC
Q 014616 247 AVGTIVGIYLIDHFG 261 (421)
Q Consensus 247 ~~g~~~~g~l~dr~g 261 (421)
++|.+++|++++|+.
T Consensus 356 ~~G~llGG~ivkk~k 370 (539)
T PF03137_consen 356 ALGILLGGYIVKKFK 370 (539)
T ss_dssp ---------------
T ss_pred heehheEEEEEEEec
Confidence 899999999999974
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.9e-08 Score=95.14 Aligned_cols=160 Identities=20% Similarity=0.240 Sum_probs=99.2
Q ss_pred hhchHH-HHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHhhHHHHHHHHHHHHHHhhCCCCCCCcc
Q 014616 217 MYYSPT-IVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGV 295 (421)
Q Consensus 217 ~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 295 (421)
..+.|. +.++.|.+..+.+........ ...++.++.|+++||+|||+.+..+.....++.+...... . .
T Consensus 21 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~-~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~~~~~~---~------~ 90 (366)
T TIGR00886 21 SPLAVQMIKDDLGLSTAQLGNLVAVPVL-AGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWAGLAV---Q------S 90 (366)
T ss_pred HHhhhHHHHHHhCCCHHHhhHhhHHHHH-HHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHh---h------h
Confidence 345664 567889998887776666554 4789999999999999999988777666665554443320 0 1
Q ss_pred hhHHHHHHHHHHHHHhhcccccccceeccccCccchhhhhhHHHHHHHHHHHHHHHHHhHHHHHH----------cCcch
Q 014616 296 YGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAEL----------VGTGA 365 (421)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~----------~g~~~ 365 (421)
+ +.......+ .... .+..+....+..|.+|++.|+.+.++......++..+++.+.+.+... .+|++
T Consensus 91 ~-~~~~~~~~~-~g~~-~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~w~~ 167 (366)
T TIGR00886 91 Y-SVLLLLRLF-IGIA-GGSFASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAHLAWGW 167 (366)
T ss_pred H-HHHHHHHHH-HHHh-chhhHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcccccccccccc
Confidence 1 111111111 1111 122233456778999999999999998877778877776666554432 36777
Q ss_pred hh-HHHHHHHHHHHHHHHhhccCCC
Q 014616 366 TF-LILAGIAVLAVVFVILFVPETQ 389 (421)
Q Consensus 366 ~~-~~~~~~~~~~~~~~~~~~~et~ 389 (421)
.+ ...+....+..++.+...+|+.
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (366)
T TIGR00886 168 AFVIVPAGILLLPALLIFFVGADTP 192 (366)
T ss_pred hhHHHHHHHHHHHHHHHHHhcccCC
Confidence 77 3334444444444444445543
|
|
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.7e-08 Score=96.77 Aligned_cols=155 Identities=17% Similarity=0.114 Sum_probs=103.3
Q ss_pred hHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHhhHHHHHHHHHHHHHHhhCCCCCCCcchhHH
Q 014616 220 SPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGWI 299 (421)
Q Consensus 220 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 299 (421)
.+++.++.|.+....+........ ...+..+++|+++||++||+.+..+.....++...+... .+ . +.
T Consensus 34 ~~~~~~~~g~s~~~~gl~~~~~~l-~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~~~------~~----~-~~ 101 (400)
T PRK11646 34 SIRFVDQLGWAAVMVGIALGLRQF-IQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMAIA------HE----P-WL 101 (400)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHH-HHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHh------cc----H-HH
Confidence 334456789888887766655443 356667889999999999999887776666655544321 00 1 11
Q ss_pred HHHHHHHHHHHhhcccccccceeccccCccchhhhhhHHHHHHHHHHHHHHHHHhHHHHHHcCcchhhHHHHHHHHHHHH
Q 014616 300 AVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELVGTGATFLILAGIAVLAVV 379 (421)
Q Consensus 300 ~~~~~~~~~~~~~~g~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 379 (421)
......+. ........+...++..|.+|++.|+.+.++.+....++..+++.+.+.+. ..+|++.|++.+...++..+
T Consensus 102 l~~~~~l~-g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~-~~g~~~~f~~~~~~~~~~~i 179 (400)
T PRK11646 102 LWLSCILS-GLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLL-QYDFRLVCATGAVLFVLAAA 179 (400)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHH
Confidence 11111111 11111223445567789999999999999999999999999988888777 56888888887777666655
Q ss_pred HHHhhccCC
Q 014616 380 FVILFVPET 388 (421)
Q Consensus 380 ~~~~~~~et 388 (421)
...+..||.
T Consensus 180 ~~~~~~~~~ 188 (400)
T PRK11646 180 FNAWLLPAY 188 (400)
T ss_pred HHHHhCCcc
Confidence 544555664
|
|
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=98.98 E-value=7.2e-09 Score=101.56 Aligned_cols=162 Identities=17% Similarity=0.132 Sum_probs=103.3
Q ss_pred hchHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHhhHHHHHHHHHHHHHHhhCCCCCCCcchh
Q 014616 218 YYSPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYG 297 (421)
Q Consensus 218 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 297 (421)
...|.+.++.|.+..+.+...+.... ...++.++.|+++||+|||+++..+.....+....+....... .. .+
T Consensus 50 ~~~~~i~~~~~~s~~~~g~~~s~~~~-~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~-~~----~~- 122 (467)
T PRK09556 50 AAQNDMISTYGLSTTELGMIGLGFSI-TYGVGKTLVGYYADGKNTKQFLPFLLILSAICMLGFGASLGSG-SV----SL- 122 (467)
T ss_pred hhhHHHHHhcCCCHHHHHHHHHHHHH-HHHHHHhhhhhHhhccCccchHHHHHHHHHHHHHHHHHHHhcc-cc----hH-
Confidence 34677788899998888777666544 4688899999999999999987766555554444443321110 01 11
Q ss_pred HHHHHHHHHHHHHhhcccccccceeccccCccchhhhhhHHHHHHHHHHHHHHHHHhHHHHHHc---CcchhhHHHHHHH
Q 014616 298 WIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELV---GTGATFLILAGIA 374 (421)
Q Consensus 298 ~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~---g~~~~~~~~~~~~ 374 (421)
+.... .-....+......|....+..|.+|++.|+.+.|+..+...+|+.+++.+.....+.. +|...|.+.+.+.
T Consensus 123 ~~l~~-~r~l~G~~~~~~~~~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~~l~~~i~~~~~~~~~~~~~~~~f~~~g~~~ 201 (467)
T PRK09556 123 GLMIA-LWALSGFFQSTGGPCSYSTITRWTPRRKRGRFLGFWNISHNLGGAGAGGVALWGANYFFDGHVIGMFIFPSIIA 201 (467)
T ss_pred HHHHH-HHHHHHHHHhccchHHHHHHHHHcCccceeeeEEeeecccchhhhHHHHHHHHHHHhhccCcchhHHHHHHHHH
Confidence 11111 1111122222234566678899999999999999998888888888877665554432 4556677766666
Q ss_pred HHHHHHHHhhccC
Q 014616 375 VLAVVFVILFVPE 387 (421)
Q Consensus 375 ~~~~~~~~~~~~e 387 (421)
++..++.+++.++
T Consensus 202 ~~~~i~~~~~~~~ 214 (467)
T PRK09556 202 LIIGFIGLRYGSD 214 (467)
T ss_pred HHHHHHHHHhCCC
Confidence 6555555544443
|
|
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=98.98 E-value=8.8e-09 Score=100.95 Aligned_cols=152 Identities=14% Similarity=0.086 Sum_probs=104.9
Q ss_pred HcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHhhHHHHHHHHHHHHHHhhCCCCCCCcchhHHHHHHHH
Q 014616 226 MAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLA 305 (421)
Q Consensus 226 ~~g~~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (421)
+.+.+..+.+...+....+ ..++.+.+|+++||+|||+.+..+.....++..+..+... .. ........
T Consensus 70 ~~~~s~~~~g~~~s~~~~~-~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~--~~--------~~~l~~~r 138 (465)
T TIGR00894 70 NFKWSGALQGLILSSHFYG-QIIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAG--GG--------IALVVFCR 138 (465)
T ss_pred CCCCCHHHhhHHHHHHHHH-HHHHHcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHH--cC--------chHHHHHH
Confidence 3566666767666665544 7889999999999999999887666555544433322210 00 11112122
Q ss_pred HHHHHhhcccccccceeccccCccchhhhhhHHHHHHHHHHHHHHHHHhHHHHHH-cCcchhhHHHHHHHHHHHHHHHhh
Q 014616 306 LYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAEL-VGTGATFLILAGIAVLAVVFVILF 384 (421)
Q Consensus 306 ~~~~~~~~g~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~ 384 (421)
+...+......+....+..|.+|++.|+++.++.+....++..+++.+.+.+.+. .+|...|++.+...++..+..+.+
T Consensus 139 ~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~~~~~~~~~~~~~~~ 218 (465)
T TIGR00894 139 VIQGLAQGSVSPATHKIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMIFYVFGIVGCAWSLLWFVF 218 (465)
T ss_pred HHHHHhcccchhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeehhhhhHHHHHHHHHHHHH
Confidence 2223334445566777889999999999999999999999999999888888887 499999999888776665555555
Q ss_pred ccCC
Q 014616 385 VPET 388 (421)
Q Consensus 385 ~~et 388 (421)
.+|.
T Consensus 219 ~~~~ 222 (465)
T TIGR00894 219 PADD 222 (465)
T ss_pred hcCC
Confidence 5544
|
|
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=2.7e-08 Score=95.49 Aligned_cols=153 Identities=20% Similarity=0.144 Sum_probs=99.2
Q ss_pred HHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHhhHHHHHHHHHHHHHHhhCCCCCCCcchhHHH
Q 014616 221 PTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGWIA 300 (421)
Q Consensus 221 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 300 (421)
|.+.++.|.+..+.+...+....+ ..++.++.|+++||+|||+.+..+.....++....... .+ . +..
T Consensus 30 ~~i~~~~~~s~~~~g~~~s~~~~~-~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~------~~----~-~~l 97 (401)
T PRK11043 30 KAIQADLQTSASAVSASLSLFLAG-FALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLWV------ES----A-AQL 97 (401)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHH-HHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHHh------cC----H-HHH
Confidence 445677888888877777665544 68899999999999999998876655544443333221 00 1 111
Q ss_pred HHHHHHHHHHhhcccccccceeccccCccchhhhhhHHHHHHHHHHHHHHHHHhHHHHHHcCcchhhHHHHHHHHHHHHH
Q 014616 301 VIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELVGTGATFLILAGIAVLAVVF 380 (421)
Q Consensus 301 ~~~~~~~~~~~~~g~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 380 (421)
.....+ .........+...+...|.+|++.|+...+..+....++..+++...+.+.+..+|+..|++.+...++..+.
T Consensus 98 ~~~~~l-~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~ 176 (401)
T PRK11043 98 LVLRFV-QAVGVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNHFGWQAIFATLFAITLLLILP 176 (401)
T ss_pred HHHHHH-HHhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHH
Confidence 111111 1111111123334567899999888888888888888888888888888888889988888887777666554
Q ss_pred HHhhcc
Q 014616 381 VILFVP 386 (421)
Q Consensus 381 ~~~~~~ 386 (421)
..+..|
T Consensus 177 ~~~~~~ 182 (401)
T PRK11043 177 TLRLKP 182 (401)
T ss_pred HHHcCC
Confidence 444333
|
|
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=98.97 E-value=5.6e-09 Score=99.15 Aligned_cols=128 Identities=18% Similarity=0.214 Sum_probs=101.1
Q ss_pred hHHHHhhhhhhhcccchhHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHhhhhhhhhhHHHHHhhcCCCCCccchhc
Q 014616 6 AIVGAASGGWINDAYGRKKATLLADVVFTAGAIIMAAAPDPYVLILGRLLVGLGVGIASVTAPVYIAEASPSEVRGGLVS 85 (421)
Q Consensus 6 ~~~g~~~~g~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~s~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg~~~~ 85 (421)
.+.+.++.|++.||+|||+++.++.+...+......+.++.+.+...++++|++.|...+....++.|..|++ |+...+
T Consensus 248 ~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~-~~~~~~ 326 (375)
T TIGR00899 248 EIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGLAADNSLWALLMLQLLNAIFIGILAGIGMLYFQDLMPGR-AGAATT 326 (375)
T ss_pred HHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcch-hhHHHH
Confidence 4556788999999999999988887776666555566778888888999999999988888888999998765 567888
Q ss_pred hHHHHHHHHHHHHHHHhhhcccCCccchHHHHhhHHHHHHHHHHhhcCCc
Q 014616 86 TNVLMITSGQFLSYLVNLAFTEVPGTWRWMLGVSAVPAIIQFVLMLFMPE 135 (421)
Q Consensus 86 ~~~~~~~~g~~l~~~~~~~~~~~~~~Wr~~f~~~~~~~l~~~~~~~~~~e 135 (421)
........|..+++.+.+.+.+.. +|+..|++.++..++..+...+++|
T Consensus 327 ~~~~~~~~g~~~g~~~~g~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~ 375 (375)
T TIGR00899 327 LYTNTGRVGWIIAGSVGGILAERW-SYHAVYWFAIVMLIVALFCLLLIKD 375 (375)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc-cchhHHHHHHHHHHHHHHHHheecC
Confidence 887777888888888777665544 4999999888777776666555443
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=98.97 E-value=2.7e-09 Score=101.07 Aligned_cols=123 Identities=13% Similarity=0.025 Sum_probs=102.1
Q ss_pred hhhhHHHHhhhhhhhcccchhHHHHHHHHHHHHHHHHHHhcCCh--hHHHHHHHHHHhhhhhhhhhHHHHHhhcCCCCCc
Q 014616 3 LVGAIVGAASGGWINDAYGRKKATLLADVVFTAGAIIMAAAPDP--YVLILGRLLVGLGVGIASVTAPVYIAEASPSEVR 80 (421)
Q Consensus 3 ~ig~~~g~~~~g~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~s~--~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~r 80 (421)
.++.+++.++.|+++||+|||+.+.++.++..++..+..+.++. ..++...++.|++.|...+....++.|.+|+++|
T Consensus 250 ~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~ 329 (377)
T TIGR00890 250 SIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLFIPMLNDVLFLATVALVFFTWGGTISLFPSLVSDIFGPANS 329 (377)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhccchhccHHHHHHHhhhhhh
Confidence 35678899999999999999999999999988888887777653 3345678889999888888888899999999999
Q ss_pred cchhchHHHHHHHHHHHHHHHhhhcccCCccchHHHHhhHHHHHHH
Q 014616 81 GGLVSTNVLMITSGQFLSYLVNLAFTEVPGTWRWMLGVSAVPAIIQ 126 (421)
Q Consensus 81 g~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~Wr~~f~~~~~~~l~~ 126 (421)
++..+........|..+++.+...+.+.. +|++.|.+.++..++.
T Consensus 330 ~~~~g~~~~~~~~g~~~~~~~~g~l~~~~-g~~~~f~~~~~~~~~~ 374 (377)
T TIGR00890 330 AANYGFLYTAKAVAGIFGGLIASHALTEI-GFEYTFIVTGAFALTS 374 (377)
T ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHHhhh-chhhHHHHHHHHHHHh
Confidence 99999988888899999888877665554 4999998877665543
|
|
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=98.96 E-value=2.3e-08 Score=97.87 Aligned_cols=156 Identities=17% Similarity=0.093 Sum_probs=104.5
Q ss_pred cceehhchHHHHHH---cCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCChhHHHHhhHHHHHHHHHHHHHHhhCC
Q 014616 213 INTVMYYSPTIVQM---AGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDH-FGRKKLALSSLAGVIISLVLLSWAFISGS 288 (421)
Q Consensus 213 ~~~~~~~~~~~~~~---~g~~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr-~grr~~~~~~~~~~~~~~~~l~~~~~~~~ 288 (421)
++....+.|.++++ .|.+..+.+...... .....++++++|+++|| +|||+.+..+.....++..++...
T Consensus 26 ~~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~-~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~~g~~~~~~~----- 99 (475)
T TIGR00924 26 YYGMQGILAVYLVQQAGLGFSQEQAFIIFGAY-SALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLMLGHFMLAMS----- 99 (475)
T ss_pred HHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHH-HHHHHHHHhhHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhc-----
Confidence 33444456767654 678777766665554 44578999999999999 899999887776666655544321
Q ss_pred CCCCCcchhHHHHHHHHHHHHHhhcccccccceeccccCccch---hhhhhHHHHHHHHHHHHHHHHHhHHHHHHcCcch
Q 014616 289 SASSSGVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQY---RGICGGMSATVNWISNLIVAQTFLTVAELVGTGA 365 (421)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~p~~~---r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 365 (421)
.+ . +....+..+ .........+...++..|.+|++. |+.+.++.++..++|..+++.+.+.+.+..+|+.
T Consensus 100 -~~----~-~~~~~~~~l-~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~g~~~ 172 (475)
T TIGR00924 100 -IY----P-DLIFYGLGT-IAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAENYGYHV 172 (475)
T ss_pred -cc----H-hHHHHHHHH-HHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHHHhcChHH
Confidence 00 0 111111111 122222334566677788888754 8888999999999999999999999988889988
Q ss_pred hhHHHHHHHHHHHHHH
Q 014616 366 TFLILAGIAVLAVVFV 381 (421)
Q Consensus 366 ~~~~~~~~~~~~~~~~ 381 (421)
.|...+..+++..+..
T Consensus 173 ~f~~~~~~~~~~~l~~ 188 (475)
T TIGR00924 173 GFNLAAVGMVIGLLTF 188 (475)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8888776555544333
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=98.95 E-value=7.3e-09 Score=102.64 Aligned_cols=153 Identities=24% Similarity=0.255 Sum_probs=97.2
Q ss_pred hHHHHHHcCCC---ChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHhhHHHHHHHHHHHHHHhhCCCCCCCcch
Q 014616 220 SPTIVQMAGFQ---SNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVY 296 (421)
Q Consensus 220 ~~~~~~~~g~~---~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 296 (421)
.|.+.++.+.+ ..+.+...+.... +..++.++.|+++||+|||+.++.+.....++.+...+. . .+
T Consensus 112 ~~~i~~e~~l~c~~~~~~~~~~s~~~~-g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~------~----~~ 180 (505)
T TIGR00898 112 SSTIVTEWDLVCEDAWKVDLTQSCFFV-GVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFS------P----NY 180 (505)
T ss_pred cccEEEEecceechHHHHHHHHHHHHH-HHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHc------c----cH
Confidence 34455566766 5555655555544 478999999999999999998877665555444433221 0 11
Q ss_pred hHHHHHHHHHHHHHhhcccccccceeccccCccchhhhhhHHHHHHHHHHHHHHHHHhHHHHHHcCcchhhHHHHHHHHH
Q 014616 297 GWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELVGTGATFLILAGIAVL 376 (421)
Q Consensus 297 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 376 (421)
+.. ...-+...+...+..+...++..|.+|++.|+.+.++......+|.++++.+...+.+ |.+.+++.+...++
T Consensus 181 -~~~-~~~r~l~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~---wr~~~~~~~i~~~~ 255 (505)
T TIGR00898 181 -TVF-LVFRLLVGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIPD---WRWLQLAVSLPTFL 255 (505)
T ss_pred -HHH-HHHHHHHHhhccchHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhH---HHHHHHHHHHHHHH
Confidence 111 1112222333334467777889999999999999888877777777666554433332 67777777766665
Q ss_pred HHHHHHhhccCCC
Q 014616 377 AVVFVILFVPETQ 389 (421)
Q Consensus 377 ~~~~~~~~~~et~ 389 (421)
..+.. ++.||+.
T Consensus 256 ~~~~~-~~~~esp 267 (505)
T TIGR00898 256 FFLLS-WFVPESP 267 (505)
T ss_pred HHHHH-HhcCCCh
Confidence 54444 5678864
|
|
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.4e-08 Score=81.52 Aligned_cols=132 Identities=23% Similarity=0.308 Sum_probs=90.4
Q ss_pred HHHHHHHHHHHHHhhcCChhHHHHhhHHHHHHHHHHHHHHhhCCCCCCCcchhHHHHHHHHHHHHHhhcccccccceecc
Q 014616 245 TNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLALYIAFFAPGMGPVPWTLNS 324 (421)
Q Consensus 245 ~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 324 (421)
...++.+..+++.||++||+....+.....++....... .+ . +...... ....+......+..+.+..
T Consensus 10 ~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~------~~----~-~~~~~~~-~~~g~~~~~~~~~~~~~~~ 77 (141)
T TIGR00880 10 GQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALS------SN----I-TVLIIAR-FLQGFGAAFALVAGAALIA 77 (141)
T ss_pred HHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHh------cc----H-HHHHHHH-HHHHHHHHHHHHhHHHHHH
Confidence 356788889999999999998776655544444333221 00 1 1111111 1111112223355567789
Q ss_pred ccCccchhhhhhHHHHHHHHHHHHHHHHHhHHHHHHcCcchhhHHHHHHHHHHHHHHHhhccCC
Q 014616 325 EVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELVGTGATFLILAGIAVLAVVFVILFVPET 388 (421)
Q Consensus 325 e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~et 388 (421)
|.+|++.|+...++.++...++..+++...+.+.+..++...+.+.+...++..+...++.||+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (141)
T TIGR00880 78 DIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFILLAFLLPET 141 (141)
T ss_pred HHCChhhhhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHHHHhhcCCCC
Confidence 9999999999999999999999999998888888877887888888877777766666666664
|
|
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.89 E-value=7e-08 Score=92.39 Aligned_cols=148 Identities=16% Similarity=0.054 Sum_probs=99.0
Q ss_pred eehhchHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHhhHHHHHHHHHHHHHHhhCCCCCCCc
Q 014616 215 TVMYYSPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSG 294 (421)
Q Consensus 215 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 294 (421)
......|.+.++.|.+..+.+...+....+ ..++.+..|++.||+|||+.+..+.....++.....+. .+
T Consensus 27 ~~~~~lp~i~~~~~~s~~~~g~~~s~~~~~-~~l~~~~~g~l~dr~G~r~~l~~~~~l~~~~~~~~~~a------~~--- 96 (393)
T PRK09705 27 SVGPLLPQLRQASGMSFSVAALLTALPVVT-MGGLALAGSWLHQHVSERRSVAISLLLIAVGALMRELY------PQ--- 96 (393)
T ss_pred ccchhHHHHHHHhCCCHHHHHHHHHHHHHH-HHHHhhhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHC------cc---
Confidence 344567888889999988888777776654 68889999999999999999988877777666655432 11
Q ss_pred chhHHHHHHHHHHHHHhhcccccccceeccccCccchhhhhhHHHHHHHHHHHHHHHHHhHHHHHHc-CcchhhHHHHHH
Q 014616 295 VYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELV-GTGATFLILAGI 373 (421)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~ 373 (421)
+... +.. -+..........+.......+.+| +.|+.+.+...+....+..+++.+.+.+.+.. +|...+.+++..
T Consensus 97 -~~~l-l~~-r~l~Gig~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~~~w~~~~~~~~~~ 172 (393)
T PRK09705 97 -SALL-LSS-ALLGGVGIGIIQAVMPSVIKRRFQ-QRTPLVMGLWSAALMGGGGLGAAITPWLVQHSETWYQTLAWWALP 172 (393)
T ss_pred -hHHH-HHH-HHHHHhHHHHHhhhhhHHHHHHcc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 1111 111 111111111223344456678887 67999999988888888888888777776664 677666665554
Q ss_pred HHH
Q 014616 374 AVL 376 (421)
Q Consensus 374 ~~~ 376 (421)
.++
T Consensus 173 ~~~ 175 (393)
T PRK09705 173 AVV 175 (393)
T ss_pred HHH
Confidence 443
|
|
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.89 E-value=8.6e-08 Score=92.99 Aligned_cols=168 Identities=18% Similarity=0.147 Sum_probs=93.7
Q ss_pred ehhchHHHHHHcC---CCChHH---HHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHhhHHHHHHHHHHHHHHhhCCC
Q 014616 216 VMYYSPTIVQMAG---FQSNQL---ALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSS 289 (421)
Q Consensus 216 ~~~~~~~~~~~~g---~~~~~~---~~~~~~~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~l~~~~~~~~~ 289 (421)
..+..|.+.++.+ .+..+. .......+ ....+|.++.|+++||+|||+.+..+.....++.....+. .+.
T Consensus 41 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ig~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~--~~~- 116 (432)
T PRK10406 41 YSFCSLYFAHIFFPSGNTTTQLLQTAGVFAAGF-LMRPIGGWLFGRIADKHGRKKSMLISVCMMCFGSLVIACL--PGY- 116 (432)
T ss_pred HHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhhc--CCc-
Confidence 3445666666653 333322 22222222 2345889999999999999999887766665555444321 000
Q ss_pred CCCCcchhHHHHHHHHHHHHHhhcccccccceeccccCccchhhhhhHHHHHHHHHHHHHHHHHhHHHH--------HHc
Q 014616 290 ASSSGVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVA--------ELV 361 (421)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~--------~~~ 361 (421)
..........+...-+...+...+..+...++..|.+|++.|+...++.......|..+++.....+. +..
T Consensus 117 -~~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~ 195 (432)
T PRK10406 117 -ETIGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGRKGFYASFQYVTLIGGQLLALLVVVVLQQTLEDAELREW 195 (432)
T ss_pred -hhHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhcc
Confidence 00000111111111122223333445677788899999999999888777666666665554433332 246
Q ss_pred CcchhhHHHHHHHHHHHHHHHhhccCCC
Q 014616 362 GTGATFLILAGIAVLAVVFVILFVPETQ 389 (421)
Q Consensus 362 g~~~~~~~~~~~~~~~~~~~~~~~~et~ 389 (421)
||+..|++.+...++.. ......||++
T Consensus 196 gWr~~F~i~~~~~ll~~-~~~~~~~e~~ 222 (432)
T PRK10406 196 GWRIPFALGAVLAVVAL-WLRRQLDETS 222 (432)
T ss_pred chHHHHHHHHHHHHHHH-HHHhcCCCCc
Confidence 78888877666555442 2333456654
|
|
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=98.88 E-value=4.5e-08 Score=93.99 Aligned_cols=160 Identities=11% Similarity=-0.018 Sum_probs=92.1
Q ss_pred chHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHhhHHHHHHHHHHHHHHhhCCCCCCCcchhH
Q 014616 219 YSPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGW 298 (421)
Q Consensus 219 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 298 (421)
+.|.+.++.|.+..+.+....... ....++.++.|++.||+|||+.+..+.....++....... .....+ . +
T Consensus 35 ~~~~~~~~~g~s~~~~g~~~~~~~-~~~~i~~~~~g~l~dr~g~k~~l~~~~~~~~~~~~~~~~~--~~~~~~----~-~ 106 (402)
T TIGR00897 35 WLSPFLKALGLSPQQSASAFTLYG-IAAAISAWISGVVAEIIGPLKTMMIGLLLWCVGHAAFIVF--GLGHAN----Y-P 106 (402)
T ss_pred hHHHHHHHhCCCHHHhHHHHHHHH-HHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHH--hccCcc----H-H
Confidence 455666888998888777665544 4578999999999999999999877666555543322111 000000 1 1
Q ss_pred HHHHHHHHHHHHhhcccccccceeccccCccchhhhhhHHHHHHHHHHH-HHHHHHhHHHHHHcCcchhhHHHHHHHHHH
Q 014616 299 IAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISN-LIVAQTFLTVAELVGTGATFLILAGIAVLA 377 (421)
Q Consensus 299 ~~~~~~~~~~~~~~~g~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 377 (421)
.......+ .........+.......+.+|+++|+++.|+.++...++. ..++.+...+.+..|+...++......++.
T Consensus 107 ~l~~~~~i-~G~g~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~~g~~~~~~~~~~~~~~~ 185 (402)
T TIGR00897 107 LILLFYGI-RGLGYPLFAYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAIPAFGEMNTLWSALAFVLTG 185 (402)
T ss_pred HHHHHHHH-HHcchHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHH
Confidence 11111111 1111111223334456788899999999999999888885 456655556666666544444433333333
Q ss_pred HHHHHhhccC
Q 014616 378 VVFVILFVPE 387 (421)
Q Consensus 378 ~~~~~~~~~e 387 (421)
.++..++.++
T Consensus 186 ~~~~~~~~~~ 195 (402)
T TIGR00897 186 GVIALFSNKD 195 (402)
T ss_pred HHHHHhccCC
Confidence 3333333343
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=98.87 E-value=2.2e-07 Score=89.30 Aligned_cols=159 Identities=18% Similarity=0.173 Sum_probs=94.8
Q ss_pred HHHHH-HcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHhhHHHHHHHHHHHHHHhhCCCCCCCcchhHH
Q 014616 221 PTIVQ-MAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGWI 299 (421)
Q Consensus 221 ~~~~~-~~g~~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 299 (421)
+.+.+ +.|++..+.+.+.+.+... ..+..+..|++.||+|.|++...+.....+......+.. .... ..+...
T Consensus 58 ~~~~~~~~~ls~~q~g~l~ai~~l~-~al~rip~G~l~Dr~G~R~v~~~~~ll~~i~~~~~~~a~--~~~~---~s~~~l 131 (462)
T PRK15034 58 VNLNKIGFNFTTDQLFLLTALPSVS-GALLRVPYSFMVPIFGGRRWTVFSTAILIIPCVWLGIAV--QNPN---TPFGIF 131 (462)
T ss_pred HHhhhhhcCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHH--cccC---CCHHHH
Confidence 34434 6889988888887776655 567778889999999999988776666555554443321 0000 011112
Q ss_pred HHHHHHHHHHHhhcccccccceeccccCccchhhhhhHHHHHHHHHHHHHHHHHhHHHH-----HHcC------------
Q 014616 300 AVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVA-----ELVG------------ 362 (421)
Q Consensus 300 ~~~~~~~~~~~~~~g~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~-----~~~g------------ 362 (421)
.+....... . .+..+.....+++.+|++.||++.|+....+++|..+...+.+.+. +..|
T Consensus 132 li~r~l~Gi--g-g~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~p~~i~~~l~~~~G~~~~~~~~g~~~ 208 (462)
T PRK15034 132 IVIALLCGF--A-GANFASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLVAPLVIFVPVFAFLGVNGVPQADGSVM 208 (462)
T ss_pred HHHHHHHHH--H-HHhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccccccccccchH
Confidence 222111111 1 2233445567789999999999999997777777766555444322 2222
Q ss_pred -cchhhHHHHHHHHHHHHHHHhhccCC
Q 014616 363 -TGATFLILAGIAVLAVVFVILFVPET 388 (421)
Q Consensus 363 -~~~~~~~~~~~~~~~~~~~~~~~~et 388 (421)
++...++.....++..+..+++.++.
T Consensus 209 ~~~~~~~~~~~~~iv~~i~~~~~~~~~ 235 (462)
T PRK15034 209 SLANAAWIWVPLLAIATIAAWSGMNDI 235 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 33445566666666655565554443
|
|
| >KOG3098 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.3e-06 Score=83.04 Aligned_cols=98 Identities=16% Similarity=0.151 Sum_probs=83.3
Q ss_pred hHHHHhhhhhhhcccchhHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHhhhhhhhhhHHHHHhhcCCCCCccchhc
Q 014616 6 AIVGAASGGWINDAYGRKKATLLADVVFTAGAIIMAAAPDPYVLILGRLLVGLGVGIASVTAPVYIAEASPSEVRGGLVS 85 (421)
Q Consensus 6 ~~~g~~~~g~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~s~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg~~~~ 85 (421)
+.+..+..+.+.|+.|.|+.++++...+..-....-+- |-+-+.+.-.+.|+|.+..+..--.+++|.+++|++.+.++
T Consensus 63 ftv~~l~~psiv~~i~~K~~lv~ga~~y~~f~~gfl~~-N~y~~yfssallG~Gaallw~GqG~ylt~~st~~tie~Nis 141 (461)
T KOG3098|consen 63 FTVSCLFAPSIVNFLGPKWALVIGATCYAAFPLGFLFP-NSYYLYFSSALLGFGAALLWTGQGGYLTSNSTRETIERNIS 141 (461)
T ss_pred HHHHHHhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHhc-chHHHHHHHHHhhhhHHheecccceehhhcCChhhHHHHHH
Confidence 45677888999999999999999999998887765554 56668889999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHhhh
Q 014616 86 TNVLMITSGQFLSYLVNLA 104 (421)
Q Consensus 86 ~~~~~~~~g~~l~~~~~~~ 104 (421)
........+.+.|...-..
T Consensus 142 i~Wai~~~~li~Ggi~l~~ 160 (461)
T KOG3098|consen 142 IFWAIGQSSLIIGGIILFI 160 (461)
T ss_pred HHHHHHHHHHHhhhHhhee
Confidence 8888888887777554433
|
|
| >KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.85 E-value=3.1e-09 Score=98.57 Aligned_cols=164 Identities=16% Similarity=0.151 Sum_probs=115.9
Q ss_pred hHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHhhHHHHHHHHHHHHHHhhCCCCCCCcchhHH
Q 014616 220 SPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGWI 299 (421)
Q Consensus 220 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 299 (421)
.+...+.+|.++...+.+..... ....+.+++.|++.||++|++++..+..+..++.+.-.... +.|.
T Consensus 56 ~~~v~~~fni~~s~~Gll~~vf~-v~~~i~sPl~gyLadryNR~~v~~vG~~iW~~Av~~~~fs~-----------~Fwq 123 (493)
T KOG1330|consen 56 LKEVQTYFNISDSELGLLQTVFI-VVFMIASPLFGYLADRYNRKRVIAVGIFIWTLAVFASGFSN-----------HFWQ 123 (493)
T ss_pred hHHHHHhcCCCchhccchhHHHH-HHHHHHHHHHHHHHhhcCcceEEeeHHHHHHHHHHHHHHHH-----------HHHH
Confidence 34444556888877776666554 44678899999999999999999888877777766654431 2233
Q ss_pred HHHHHHHHHHHhhcccccccceeccccCccchhhhhhHHHHHHHHHHHHHHHHHhHHHHHHcC-cchhhHHHHHHHHHHH
Q 014616 300 AVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELVG-TGATFLILAGIAVLAV 378 (421)
Q Consensus 300 ~~~~~~~~~~~~~~g~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~ 378 (421)
.+++=. +....-.+..|+..+..++.||...|+++.++.+....+|..++...-....+..+ |+++|...+++.++.+
T Consensus 124 ~~l~R~-~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~~Wr~af~~~avl~vi~~ 202 (493)
T KOG1330|consen 124 VLLCRG-FVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLTFWWRWAFRGSAVLGVIVG 202 (493)
T ss_pred HHHHHH-HhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCccceEEEEEeehHHHHHHH
Confidence 322211 12222334457888899999999999999999999988887665444444455555 8899999999999998
Q ss_pred HHHHhhccCCCCCCHHHH
Q 014616 379 VFVILFVPETQGLTFLEV 396 (421)
Q Consensus 379 ~~~~~~~~et~~~~~~~~ 396 (421)
++..++.+|.+++..+|.
T Consensus 203 ~L~~~f~~eP~rga~~~~ 220 (493)
T KOG1330|consen 203 LLVFLFVREPERGARDEV 220 (493)
T ss_pred HHHHhhccCccccccccc
Confidence 888888887765543333
|
|
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.1e-07 Score=93.33 Aligned_cols=150 Identities=17% Similarity=0.099 Sum_probs=97.3
Q ss_pred ceehhchHHHH-HHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCChhHHHHhhHHHHHHHHHHHHHHhhCCCCC
Q 014616 214 NTVMYYSPTIV-QMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDH-FGRKKLALSSLAGVIISLVLLSWAFISGSSAS 291 (421)
Q Consensus 214 ~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr-~grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 291 (421)
+....+.+.++ ++.|.+..+......... .......+++|+++|| +|||+.+..+.....++.+.+.+.. .
T Consensus 31 y~~~~~l~~yl~~~lg~~~~~a~~i~~~~~-~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~~~g~~~~~~~~------~ 103 (489)
T PRK10207 31 YGVQGILAVFFVKQLGFSQEQAFITFGAFA-ALVYGLISIGGYVGDHLLGTKRTIVLGAIVLAIGYFMTGMSL------L 103 (489)
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHH-HHHHHHHhhHHHhhhhccchHHHHHHHHHHHHHHHHHHHHhc------c
Confidence 33333344444 567887766554444433 3345667789999999 9999999888777666665544321 0
Q ss_pred CCcchhHHHHHHHHHHHHHhhcccccccceeccccCccch--hhhhhHHHHHHHHHHHHHHHHHhHHHHHHcCcchhhHH
Q 014616 292 SSGVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQY--RGICGGMSATVNWISNLIVAQTFLTVAELVGTGATFLI 369 (421)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~p~~~--r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 369 (421)
.. .....+. ...........|...++..|.+|++. |+.+.+..++..++|..+++...+.+.+..||++.|++
T Consensus 104 ~~----~ll~~~~-~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~~~gw~~~F~i 178 (489)
T PRK10207 104 KP----DLIFIAL-GTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIADKFGYSVTYNL 178 (489)
T ss_pred ch----hHHHHHH-HHHHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHH
Confidence 00 0111111 11223333345666788899998874 47778888999999999999999999999999888887
Q ss_pred HHHHHH
Q 014616 370 LAGIAV 375 (421)
Q Consensus 370 ~~~~~~ 375 (421)
.+...+
T Consensus 179 ~~i~~~ 184 (489)
T PRK10207 179 CGAGLI 184 (489)
T ss_pred HHHHHH
Confidence 554333
|
|
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.84 E-value=3.9e-08 Score=95.52 Aligned_cols=131 Identities=13% Similarity=0.206 Sum_probs=90.7
Q ss_pred hHHHHhhhhhhhcccchhHHHHHHHHHHHHHHHHHHh---c-CChhHHHHHHHHHHhhhhhhhhhHHHHHhhcCCCCCcc
Q 014616 6 AIVGAASGGWINDAYGRKKATLLADVVFTAGAIIMAA---A-PDPYVLILGRLLVGLGVGIASVTAPVYIAEASPSEVRG 81 (421)
Q Consensus 6 ~~~g~~~~g~l~dr~Grr~~~~~~~~l~~i~~~~~~~---~-~s~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg 81 (421)
..++.++.|+++||+|||+++..+.++..++...... . ++...+++.-++.|++.+...+....+++|.+|.+.|+
T Consensus 299 ~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~p~~~r~ 378 (438)
T PRK09952 299 SCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFMALEAQSIFWIVFFSIMLANIAHDMVVCVQQPMFTEMFGASYRY 378 (438)
T ss_pred HHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcchhH
Confidence 4566778999999999999988887665554433322 2 23444455667778888888888899999999999998
Q ss_pred chhchH-HHHHHHHHHHHHHHhhhcccC-CccchHHHHhhHHHHHHHHHHhhcCCcC
Q 014616 82 GLVSTN-VLMITSGQFLSYLVNLAFTEV-PGTWRWMLGVSAVPAIIQFVLMLFMPES 136 (421)
Q Consensus 82 ~~~~~~-~~~~~~g~~l~~~~~~~~~~~-~~~Wr~~f~~~~~~~l~~~~~~~~~~es 136 (421)
...+.. .....+|..+++.+...+... .++|+..+...++.+++..+..+.++|+
T Consensus 379 tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~ 435 (438)
T PRK09952 379 SGAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISAMTALLMKDN 435 (438)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHcccc
Confidence 666653 333345666666666555432 2359988888777777766665555653
|
|
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.1e-07 Score=91.09 Aligned_cols=151 Identities=15% Similarity=0.114 Sum_probs=95.6
Q ss_pred HHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHhhHHHHHHHHHHHHHHhhCCCCCCCcchhHHH
Q 014616 221 PTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGWIA 300 (421)
Q Consensus 221 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 300 (421)
+...++.+.+....+...... .....+..++.|+++||+|||++++.+.....++.+.+.+.. + . ...
T Consensus 27 ~~~~~~~~~s~~~~~~~~~~~-~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~~~~~~------~----~-~~~ 94 (393)
T PRK11195 27 IALLKELHYPDWSQPLLQMFF-VLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCLLMLFGI------H----P-LLA 94 (393)
T ss_pred HHHHHHcCCcHHHHHHHHHHH-HHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHHHHHHHH------H----H-HHH
Confidence 444566777666655554443 345788899999999999999998877665554443332210 0 0 011
Q ss_pred HHHHHHHHHHhhcccccccceeccccCccchhhhhhHHHHHHHHHHHHHHHHHhHHHHHHcCcchhhHHHHHHHHHHHHH
Q 014616 301 VIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELVGTGATFLILAGIAVLAVVF 380 (421)
Q Consensus 301 ~~~~~~~~~~~~~g~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 380 (421)
-+..........|...++..|.+|++.|+++.+..++...++..+++.+.+.+.+.. +...+.+.+...++. .+
T Consensus 95 ----r~l~G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~~-~~~~~~i~~~~~~~~-~~ 168 (393)
T PRK11195 95 ----YGLVGIGAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALADPH-AEAALAVCALIYLLA-AL 168 (393)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH-HH
Confidence 011122223345777788899999999999999999999999999988888777753 333444443333323 33
Q ss_pred HHhhccCCC
Q 014616 381 VILFVPETQ 389 (421)
Q Consensus 381 ~~~~~~et~ 389 (421)
..++.||++
T Consensus 169 ~~~~l~~~~ 177 (393)
T PRK11195 169 FNLFIPRLG 177 (393)
T ss_pred HHhcCCCCc
Confidence 445567654
|
|
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=98.82 E-value=1e-07 Score=92.54 Aligned_cols=156 Identities=18% Similarity=0.109 Sum_probs=87.7
Q ss_pred hhcCcceehhchHHHHHHcCCCChHHHHHH-HHHHH----HHHHHHHHHHHHHHhhcCChhHHHHhhHHHHHHHHHHHHH
Q 014616 209 QFTGINTVMYYSPTIVQMAGFQSNQLALLL-SLAVA----GTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWA 283 (421)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~----~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~l~~~ 283 (421)
............|.+.++.+.+..+.+.+. +.... ....++.++.|+++||+|||+.++.+.....++..+..+.
T Consensus 27 ~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~l~~~~ 106 (434)
T PRK15075 27 EMFDFFLFGFYATAIAKTFFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRVGRRKGLIVTLSIMASGTLLIAFV 106 (434)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHhC
Confidence 333344455677888888887766544332 11111 1123678889999999999999887776655555444321
Q ss_pred HhhCCCCCCCcchhH--HHHHHHHHHHHHhhcccccccceeccccCccchhhhhhHHHHHHHHHHHHHHHHHhHHH----
Q 014616 284 FISGSSASSSGVYGW--IAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTV---- 357 (421)
Q Consensus 284 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~g~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~---- 357 (421)
.+......+ ..+...-+..........+....+.+|.+|++.|+++.++......++..+++.+...+
T Consensus 107 ------~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~~~~~g~~~g~~~g~~l~~~~ 180 (434)
T PRK15075 107 ------PGYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGRKGFYTSWQSASQQVAVVFAALLGYLLNQWL 180 (434)
T ss_pred ------CcHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 000000000 00111111111212222344456789999999999999988877776665554443332
Q ss_pred ----HHHcCcchhhHHH
Q 014616 358 ----AELVGTGATFLIL 370 (421)
Q Consensus 358 ----~~~~g~~~~~~~~ 370 (421)
.+..||..+|++.
T Consensus 181 ~~~~~~~~gWr~~f~~~ 197 (434)
T PRK15075 181 SPAQMAEWGWRIPFLIG 197 (434)
T ss_pred CHHHHhccchHHHHHHH
Confidence 2346777777653
|
|
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=98.82 E-value=9.4e-08 Score=94.21 Aligned_cols=153 Identities=18% Similarity=0.115 Sum_probs=94.3
Q ss_pred ceehhchHHHH-HHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCChhHHHHhhHHHHHHHHHHHHHHhhCCCCC
Q 014616 214 NTVMYYSPTIV-QMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDH-FGRKKLALSSLAGVIISLVLLSWAFISGSSAS 291 (421)
Q Consensus 214 ~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr-~grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 291 (421)
+....+.+.++ ++.|.+..+......... .......+++|+++|| +|||+.+..+.....++..++... ..
T Consensus 38 y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~-~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~~~ig~~l~~~~---~~--- 110 (500)
T PRK09584 38 YGLQGIMAVYLVKQLGMSEADSITLFSSFS-ALVYGLVAIGGWLGDKVLGTKRVIMLGAIVLAIGYALVAWS---GH--- 110 (500)
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHH-HHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHh---cc---
Confidence 33444555555 567887766555444432 2233445689999999 599998887766655554443321 00
Q ss_pred CCcchhHHHHHHHHHHHHHhhcccccccceeccccCccch--hhhhhHHHHHHHHHHHHHHHHHhHHHHHHcCcchhhHH
Q 014616 292 SSGVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQY--RGICGGMSATVNWISNLIVAQTFLTVAELVGTGATFLI 369 (421)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~p~~~--r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 369 (421)
.. .....+..+ .........+...++..|.+|++. |+.+.++.++..++|..+++.+.+++.+..||+..|.+
T Consensus 111 ---~~-~~l~~~~~l-~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~g~~~~F~i 185 (500)
T PRK09584 111 ---DA-GIVYMGMAT-IAVGNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWLAAKYGWSVAFAL 185 (500)
T ss_pred ---cH-HHHHHHHHH-HHHhhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHH
Confidence 00 111111111 112222234555567889998653 44567788899999999999999999998899888888
Q ss_pred HHHHHHHHH
Q 014616 370 LAGIAVLAV 378 (421)
Q Consensus 370 ~~~~~~~~~ 378 (421)
.+...+++.
T Consensus 186 ~~i~~~i~~ 194 (500)
T PRK09584 186 SVVGMLITV 194 (500)
T ss_pred HHHHHHHHH
Confidence 765544443
|
|
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.82 E-value=2.6e-07 Score=85.17 Aligned_cols=155 Identities=21% Similarity=0.189 Sum_probs=112.9
Q ss_pred hHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHhhHHHHHHHHHHHHHHhhCCCCCCCcchhHH
Q 014616 220 SPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGWI 299 (421)
Q Consensus 220 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 299 (421)
.+.+.++.+++..|.+.+...+... ..+..+.-|.+.||+|.|++...+.....+....+.+.. +.. .+...
T Consensus 37 ~~~i~~~~~LS~~q~~ll~aiPil~-GallRl~~g~l~drfGgR~~~~~s~~l~~IP~~~~~~a~---~~~----~~~~l 108 (417)
T COG2223 37 GVFIKSDFGLSEGQKGLLVAIPILV-GALLRLPYGFLTDRFGGRKWTILSMLLLLIPCLGLAFAV---TYP----STWQL 108 (417)
T ss_pred HhhhccccCCCHHHHHHHHHHHHHH-hHHHHHHHHhhhcccCchHHHHHHHHHHHHHHHHHHHHc---cCC----chHHH
Confidence 3444577899999998888887765 678889999999999999988777666666555554432 111 11112
Q ss_pred HHHHHHHHHHHhhcccccccceeccccCccchhhhhhHHHHHHHHHHHHHHHHHhHHHHHHcC---cchhhHHHHHHHHH
Q 014616 300 AVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELVG---TGATFLILAGIAVL 376 (421)
Q Consensus 300 ~~~~~~~~~~~~~~g~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g---~~~~~~~~~~~~~~ 376 (421)
...++.+ ..+.+.......++++-||++.+|.+.|+.. .+++|..+..+..+.+....+ |+....+.....++
T Consensus 109 l~~gll~---G~~GasFav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v~~~~g~~~w~~~~~i~~~~l~v 184 (417)
T COG2223 109 LVIGLLL---GLAGASFAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLVAVAFGFLAWRNVAGIYVVALAI 184 (417)
T ss_pred HHHHHHH---hcccceehcccccccccCChhhhhHHHHHhc-cccccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 2222222 2233445666778899999999999999999 999999898888888888888 78888888888888
Q ss_pred HHHHHHhhcc
Q 014616 377 AVVFVILFVP 386 (421)
Q Consensus 377 ~~~~~~~~~~ 386 (421)
..+.+++...
T Consensus 185 ~~v~~~~~~~ 194 (417)
T COG2223 185 AAVLAWLGMN 194 (417)
T ss_pred HHHHHHHHhC
Confidence 7777776543
|
|
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=98.81 E-value=1.3e-07 Score=89.33 Aligned_cols=161 Identities=17% Similarity=0.180 Sum_probs=99.6
Q ss_pred hchHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhc-----CChhHHH-HhhHHHHHHHHHHHHHHhhCCCCC
Q 014616 218 YYSPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHF-----GRKKLAL-SSLAGVIISLVLLSWAFISGSSAS 291 (421)
Q Consensus 218 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~-----grr~~~~-~~~~~~~~~~~~l~~~~~~~~~~~ 291 (421)
...|.+.++.|.+..+.+..... ... ..+ .++.|.++||+ ||||..+ .+.....++...+. +.. .
T Consensus 9 ~~~~~~~~~~g~s~~~~g~~~~~-~~~-~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~--~~~-~--- 79 (356)
T TIGR00901 9 NTLPYWLRSKNVSLKTIGFFSLV-GLP-YSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILS--FLV-P--- 79 (356)
T ss_pred hHHHHHHHHcCCCHHHHHHHHHH-HHH-HHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHH--cCC-c---
Confidence 34677888899998887776533 221 223 78899999998 7888643 33333333322222 111 1
Q ss_pred CCcchhHHHHHHHHHHHHHhhcccccccceeccccCccchhhhhhHHHHHHHHHHHHHHHHHhHHHHHHcC--------c
Q 014616 292 SSGVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELVG--------T 363 (421)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g--------~ 363 (421)
... ...+....+..........+...++..|.+|+++|+.+.+...+...+|..+++.+...+.+..+ |
T Consensus 80 ~~~---l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~w 156 (356)
T TIGR00901 80 STD---LPLLAGLAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLITLW 156 (356)
T ss_pred chh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccc
Confidence 011 11111111111122222234455678999999999999999998889998888888877777777 8
Q ss_pred chhhHHHHHHHHHHHHHHHhhccCCCC
Q 014616 364 GATFLILAGIAVLAVVFVILFVPETQG 390 (421)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~et~~ 390 (421)
...|++.+...++.....++..||++.
T Consensus 157 r~~f~i~ai~~l~~~~~~~~~~~e~~~ 183 (356)
T TIGR00901 157 GYIFFWTALLILPGLLVTLFLAKEPQE 183 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCc
Confidence 888888877666655555545677543
|
|
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=98.81 E-value=3.1e-08 Score=94.45 Aligned_cols=125 Identities=16% Similarity=0.152 Sum_probs=97.3
Q ss_pred hhhhHHHHhhhhhhhcccchhHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHhhhhhhhhhHHHHHhhcCCCCCccc
Q 014616 3 LVGAIVGAASGGWINDAYGRKKATLLADVVFTAGAIIMAAAPDPYVLILGRLLVGLGVGIASVTAPVYIAEASPSEVRGG 82 (421)
Q Consensus 3 ~ig~~~g~~~~g~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~s~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg~ 82 (421)
.++.++|+++.|++.||+|||+++..+..+..++..... + .......+++.|++.+...|.....+.|..|+++++.
T Consensus 245 ~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~--~-~~~~~~~~~l~g~~~~~~~p~~~~~~~~~~~~~~~~~ 321 (381)
T PRK03633 245 VSAGILGQWPIGRLADRFGRLLVLRVQVFVVILGSIAML--S-QAAMAPALFILGAAGFTLYPVAMAWACEKVEHHELVA 321 (381)
T ss_pred HHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHHHHh--h-hHHHHHHHHHHHHHHHhHHHHHHHHHHccCCHHHHHH
Confidence 356788999999999999999999888888777665443 2 2344567888898888888999999999999888777
Q ss_pred hhchHHHHHHHHHHHHHHHhhhcccCCccchHHHHhhHHHHHHHHHHhh
Q 014616 83 LVSTNVLMITSGQFLSYLVNLAFTEVPGTWRWMLGVSAVPAIIQFVLML 131 (421)
Q Consensus 83 ~~~~~~~~~~~g~~l~~~~~~~~~~~~~~Wr~~f~~~~~~~l~~~~~~~ 131 (421)
..+.......+|..+++.+++.+.+.. +|++.|.+.+...++..+..+
T Consensus 322 ~~~~~~~~~~lG~~igp~~~G~l~~~~-g~~~~f~~~~~~~l~~~~~~~ 369 (381)
T PRK03633 322 MNQALLLSYTVGSLLGPSFTAMLMQNY-SDNLLFIMIASVSFIYLLMLL 369 (381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh-CccHHHHHHHHHHHHHHHHHH
Confidence 766666778889999988887776655 499999988776665554443
|
|
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=98.80 E-value=1.4e-07 Score=90.56 Aligned_cols=166 Identities=19% Similarity=0.322 Sum_probs=106.1
Q ss_pred CcceehhchHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhc-----CChh-HHHHhhHHHHHHHHHHHHHHh
Q 014616 212 GINTVMYYSPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHF-----GRKK-LALSSLAGVIISLVLLSWAFI 285 (421)
Q Consensus 212 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~-----grr~-~~~~~~~~~~~~~~~l~~~~~ 285 (421)
.......-.|.++++.|++..+.+.+..+... .+..+++|+++||+ |||| .+..+.....++...+...
T Consensus 14 ~~~~~~~~~~~~l~~~g~~~~~ig~~~~~~~~---~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~~~~l~~~-- 88 (402)
T PRK11902 14 PLALTSGTLQAWMTVEGLDIQTIGFFSLVGQA---YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAASIAAMAFC-- 88 (402)
T ss_pred hHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH---HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHHHHHHHhc--
Confidence 33344456788999999999999877555442 57789999999999 7776 4554444444343333221
Q ss_pred hCCCCCCCcchhHHHHHHHHHHHHHhhcccccccceeccccCccchhhhhhHHHHHHHHHHHHHHHHHhHHHHHH-cCcc
Q 014616 286 SGSSASSSGVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAEL-VGTG 364 (421)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~-~g~~ 364 (421)
... ... +.. ....+...+......+...++..|.+|+++|+.+.++..+...++..+++.+...+.+. .||+
T Consensus 89 -~~~---~~~--~~l-~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~~~gw~ 161 (402)
T PRK11902 89 -PPH---AAL--WPL-AGLAVLVAFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWLADRVLGWG 161 (402)
T ss_pred -Ccc---chH--HHH-HHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHHHhcccCHH
Confidence 110 111 111 11111112222233455567889999999999999999988888888888777777774 4888
Q ss_pred hhhHHHHHHHHHHHHHHHhhccCCCC
Q 014616 365 ATFLILAGIAVLAVVFVILFVPETQG 390 (421)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~et~~ 390 (421)
..|++.+...++.... .+..||++.
T Consensus 162 ~~f~i~a~~~l~~~l~-~~~~~e~~~ 186 (402)
T PRK11902 162 NTYLLMAGLMLAGALT-TLWAPEPEV 186 (402)
T ss_pred HHHHHHHHHHHHHHHH-HHhcCCCcc
Confidence 8888888876655443 345566643
|
|
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=98.80 E-value=2.3e-07 Score=89.14 Aligned_cols=154 Identities=14% Similarity=0.063 Sum_probs=97.8
Q ss_pred hchHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHhhHHHHHHHHHHHHHHhhCCCCCCCcchh
Q 014616 218 YYSPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYG 297 (421)
Q Consensus 218 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 297 (421)
...|.+.++.|.+..+.+...+.... ...++++..|++.||+|||+.+..+.....++..+....... ..+.
T Consensus 24 ~l~~~~~~~~~~s~~~~g~l~s~~~~-g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~~l~~~~~~~-------~~~~ 95 (410)
T TIGR00885 24 PMVPQFQQAFTLTAFQAALVQSAFYG-GYFIMAIPAAIFMKKLSYKAGILLGLFLYALGAFLFWPAAEI-------MNYT 95 (410)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHhh-------ccHH
Confidence 45677888889988887776666554 478899999999999999999887777666665443221100 0111
Q ss_pred HHHHHHHHHHHHHhhcccccccceeccccCccchhhhhhHHHHHHHHHHHHHHHHHhHHHHH------------------
Q 014616 298 WIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAE------------------ 359 (421)
Q Consensus 298 ~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~------------------ 359 (421)
.......+ .........+....+..+..|+++|++..++.+..+.+|..+++.+...+..
T Consensus 96 -~~l~~~~l-~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~~~~~~~~~~~~~~~~~~~ 173 (410)
T TIGR00885 96 -LFLVGLFI-LTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLILSNLPHQSQDVLDKLSPEE 173 (410)
T ss_pred -HHHHHHHH-HHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhhhhhcCHHH
Confidence 11111111 1111111123333556778899999999999999999998888877665532
Q ss_pred --------HcCcchhhHHHHHHHHHHHHHH
Q 014616 360 --------LVGTGATFLILAGIAVLAVVFV 381 (421)
Q Consensus 360 --------~~g~~~~~~~~~~~~~~~~~~~ 381 (421)
..+|+.+|.+.+.+.++..+..
T Consensus 174 ~~~~~~~~~~~w~~~fl~~a~~~~~~~~~~ 203 (410)
T TIGR00885 174 LSAIKHSDLASVQTPYMIIGAVVLAVALLI 203 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2346777877777666554433
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=98.78 E-value=4.2e-08 Score=93.55 Aligned_cols=121 Identities=20% Similarity=0.146 Sum_probs=90.5
Q ss_pred hhhhHHHHhhhhhhhcccchhHHHHHHHHHHHHHH--HHHHh--cCChhHHHHHHHHHHhhhhhhhhhHHHHHhhcCCCC
Q 014616 3 LVGAIVGAASGGWINDAYGRKKATLLADVVFTAGA--IIMAA--APDPYVLILGRLLVGLGVGIASVTAPVYIAEASPSE 78 (421)
Q Consensus 3 ~ig~~~g~~~~g~l~dr~Grr~~~~~~~~l~~i~~--~~~~~--~~s~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~ 78 (421)
.++..++.++.|+++||+|||+.+.....+..+.. ....+ .++...+....++.|++.+...+....++.|.+|++
T Consensus 265 ~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~ 344 (394)
T TIGR00883 265 LILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLMALLDSGSFTLFFFLVLGLALIGGMYTGPMGSFLPELFPTE 344 (394)
T ss_pred HHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCcc
Confidence 35678888999999999999998776555544433 22222 246677778889999999999999999999999999
Q ss_pred Cccchhch-HHHHHHHHHHHHHHHhhhcccCCccchHHHHhhHHHH
Q 014616 79 VRGGLVST-NVLMITSGQFLSYLVNLAFTEVPGTWRWMLGVSAVPA 123 (421)
Q Consensus 79 ~rg~~~~~-~~~~~~~g~~l~~~~~~~~~~~~~~Wr~~f~~~~~~~ 123 (421)
+|++..+. +......|..+++.+++.+.+..+.|++.++..+...
T Consensus 345 ~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~g~~~~~~~~~~~~~ 390 (394)
T TIGR00883 345 VRYTGASLAYNLAGAIFGGFAPYIAAALVAMTGDWYAIGYYLAALA 390 (394)
T ss_pred ceeeEeeehhHhHHHHHhhHHHHHHHHHHHHcCcchhHHHHHHHHH
Confidence 99988876 3455566777777777766655555888877665543
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.78 E-value=4e-07 Score=90.04 Aligned_cols=159 Identities=14% Similarity=0.173 Sum_probs=96.3
Q ss_pred hhchHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHhhHHHHHHHHHHHHHHhhCCCCCCCcch
Q 014616 217 MYYSPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVY 296 (421)
Q Consensus 217 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 296 (421)
..+.|.+.+++|.+..+.+....... . .....+..|++.||+|+|+++..+.....++.++..+.... ... +..
T Consensus 47 sv~s~~L~~~lgls~~~l~~i~svg~-~-~g~~~lp~G~L~Dr~G~R~vllig~ll~~iG~ll~ala~~~--~i~-~s~- 120 (591)
T PTZ00207 47 NLISGAMQARYNLTQRDLSTITTVGI-A-VGYFLLPYSFIYDYLGPRPIFVLSMTVFCLGTLLFALTFQE--VIE-GSV- 120 (591)
T ss_pred HHHHHHHHHHhCcCHHHHHHHHHHHH-H-HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcc--ccc-CcH-
Confidence 45677788889999888776655422 2 23455678999999999999988887777777665543211 000 011
Q ss_pred hHHHHHHHHHHHHHhhcccccccceeccccCccchhhhhhHHHHHHHHHHHHHHHHHhHHHHHHcCcchhhHHHHHHHHH
Q 014616 297 GWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELVGTGATFLILAGIAVL 376 (421)
Q Consensus 297 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 376 (421)
+...+...+ .........+.......+.|| +.||.+.|+..+...+|+.+.+.+...... .++...|++.+.+.++
T Consensus 121 -~~l~l~r~l-~G~G~~~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~-~~~~~~fl~l~vl~~v 196 (591)
T PTZ00207 121 -VRLSVYNGL-MTLGCMLFDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFFS-DNTSAYFFFLMSFALV 196 (591)
T ss_pred -HHHHHHHHH-HHHHHHHHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHH
Confidence 111111111 111111111222344577887 679999999999999998765555544433 3456777777777776
Q ss_pred HHHHHHhhc
Q 014616 377 AVVFVILFV 385 (421)
Q Consensus 377 ~~~~~~~~~ 385 (421)
..++...+.
T Consensus 197 v~ll~~~~v 205 (591)
T PTZ00207 197 VGILAIVFM 205 (591)
T ss_pred HHHHHHhhe
Confidence 655555544
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.76 E-value=2.1e-07 Score=101.38 Aligned_cols=144 Identities=13% Similarity=0.030 Sum_probs=87.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHhhHHHHHHHHHHHHHHhhCCCCCCCcchhHHHHHHHHHHHHHhhccc
Q 014616 236 LLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLALYIAFFAPGM 315 (421)
Q Consensus 236 ~~~~~~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 315 (421)
.+....+....++.++++|+++||++||+++.......++........+... + + +.. ....+.........
T Consensus 55 ~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~~~~~~~~~~~~~---s----~-~~l-~~~~~l~gi~~a~~ 125 (1140)
T PRK06814 55 TLAGAVFILPFFIFSALAGQLADKYDKAKLAKILKFAEIGIAALAIYGFHLN---S----V-PLL-FAALFLMGIHSALF 125 (1140)
T ss_pred HHHHHHHHHHHHHHhhhHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHh---h----H-HHH-HHHHHHHHHHHHhh
Confidence 3334344455678889999999999999875332222111111111111110 0 1 111 11122222223334
Q ss_pred ccccceeccccCccchhhhhhHHHHHHHHHHHHHHHHHhHHHHHHcCcchhhHHHHHHHHHHHHHHHhhccCCC
Q 014616 316 GPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELVGTGATFLILAGIAVLAVVFVILFVPETQ 389 (421)
Q Consensus 316 ~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~et~ 389 (421)
.|...++..+.+|++.|+.+.++.++...++..+++.+.+.+.+..+|...| +...+..+...+.++..|+++
T Consensus 126 ~p~~~a~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 198 (1140)
T PRK06814 126 GPIKYSILPDHLNKDELLGANALVEAGTFIAILLGTIIGGLATISGNFVILV-ALLMGIAVLGWLASLFIPKTG 198 (1140)
T ss_pred chHHHHhhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHhccccHHHH-HHHHHHHHHHHHHHhhCCCCC
Confidence 5777888999999999999999999999999999999999988888887666 333333333344445556553
|
|
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=98.74 E-value=3.5e-07 Score=90.10 Aligned_cols=159 Identities=15% Similarity=0.273 Sum_probs=101.4
Q ss_pred hchHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhc-----CChhH-HHHhhHHHHHHHHHHHHHHhhCCCCC
Q 014616 218 YYSPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHF-----GRKKL-ALSSLAGVIISLVLLSWAFISGSSAS 291 (421)
Q Consensus 218 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~-----grr~~-~~~~~~~~~~~~~~l~~~~~~~~~~~ 291 (421)
...|.++++.|.+..+.+....... ..++.++++.++||+ |||+. +..+.....++...+... .+.
T Consensus 33 ~~l~~~l~~~g~~~~~ig~~~~~~~---~~~~~~l~gpl~Dr~~~~~~Grrr~~ll~~~i~~~~~~~~~a~~---~~~-- 104 (491)
T PRK11010 33 GTLQAWMTVENIDLKTIGFFSLVGQ---AYVFKFLWSPLMDRYTPPFLGRRRGWLLATQLLLLVAIAAMGFL---EPG-- 104 (491)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHH---HHHHHHHHHHHHHcccccCCCCchHHHHHHHHHHHHHHHHHHHc---CCc--
Confidence 3467778888888877776532222 236789999999999 98885 444444443333333221 110
Q ss_pred CCcchhHHHHHHHHHHHHHhhcccccccceeccccCccchhhhhhHHHHHHHHHHHHHHHHHhHHHHH-HcCcchhhHHH
Q 014616 292 SSGVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAE-LVGTGATFLIL 370 (421)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~ 370 (421)
....+..... ....++.....+...++..|.+|++.|+.+.++..+...++..+++.....+.+ ..||...|++.
T Consensus 105 --~~l~~l~~~~--~l~~~~~a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~llg~~l~~~l~~~~~GWr~~f~i~ 180 (491)
T PRK11010 105 --TQLRWLAALA--VVIAFCSASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLAMLVSGGLALWLADRYLGWQGMYWLM 180 (491)
T ss_pred --chHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHH
Confidence 1111111111 111222223344556788999999999999999999999999888888777777 56899999998
Q ss_pred HHHHHHHHHHHHhhccCCC
Q 014616 371 AGIAVLAVVFVILFVPETQ 389 (421)
Q Consensus 371 ~~~~~~~~~~~~~~~~et~ 389 (421)
+...++..+..+ ..||++
T Consensus 181 a~l~ll~~l~~~-~~~e~~ 198 (491)
T PRK11010 181 AALLIPCIIATL-LAPEPT 198 (491)
T ss_pred HHHHHHHHHHHH-hcCCCc
Confidence 877666644433 457764
|
|
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=98.74 E-value=1e-07 Score=90.88 Aligned_cols=125 Identities=15% Similarity=0.076 Sum_probs=103.6
Q ss_pred hhhhHHHHhhhhhhhcccchhHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHhhhhhhhhhHHHHHhhcCCCCCccc
Q 014616 3 LVGAIVGAASGGWINDAYGRKKATLLADVVFTAGAIIMAAAPDPYVLILGRLLVGLGVGIASVTAPVYIAEASPSEVRGG 82 (421)
Q Consensus 3 ~ig~~~g~~~~g~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~s~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg~ 82 (421)
.++.+++.++.+++.||+|+|+.+.++.+...+...+.++++|.+.++..++++|+..|...+....++.+. |+++|+.
T Consensus 250 ~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~~~~ 328 (382)
T TIGR00902 250 VLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAIIGAIEAFPLIFLLQILHCGTFAVCHLAAMRYIAAQ-PGSEIAK 328 (382)
T ss_pred HHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHhhHHH
Confidence 356677788899999999999999999999999999999999999999999999999999999999999998 8888887
Q ss_pred hhchHH-HHHHHHHHHHHHHhhhcccCCccchHHHHhhHHHHHHHHHHh
Q 014616 83 LVSTNV-LMITSGQFLSYLVNLAFTEVPGTWRWMLGVSAVPAIIQFVLM 130 (421)
Q Consensus 83 ~~~~~~-~~~~~g~~l~~~~~~~~~~~~~~Wr~~f~~~~~~~l~~~~~~ 130 (421)
..+.+. .....|..+++.+++.+.+..+ + ..|++.+..+++.+++.
T Consensus 329 ~q~~~~~~~~g~g~~~g~~~~G~l~~~~g-~-~~~~~~~~~~~~~~~~~ 375 (382)
T TIGR00902 329 LQALYNALAMGGLIAIFTAFAGFIYPTLG-A-GTFVFMAIIAAAAFFLI 375 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcc-H-HHHHHHHHHHHHHHHHH
Confidence 777754 4566788888888887766554 4 55666666666554443
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=98.73 E-value=1.1e-06 Score=83.53 Aligned_cols=156 Identities=10% Similarity=0.051 Sum_probs=102.5
Q ss_pred hhchHHHHHHcCCCChH-HHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHhhHHHHHHHHHHHHHHhhCCCCCCCcc
Q 014616 217 MYYSPTIVQMAGFQSNQ-LALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGV 295 (421)
Q Consensus 217 ~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 295 (421)
.+..|.+.++.|++..+ .+........+ ..+..+.+|+++||+|.|+.+..+.+..++...++.+.-.
T Consensus 46 s~a~p~L~~elglT~~qv~G~I~s~F~ys-Yal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa~S---------- 114 (511)
T TIGR00806 46 SFITPYLLTVLNFTEETVTNEIIPVLPYS-HLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLGTS---------- 114 (511)
T ss_pred HHHHHHHHHHcCCCHHHhcchHHHHHHHH-HHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHH----------
Confidence 34567777889999888 66666665554 7899999999999999999988877777777666655310
Q ss_pred hhHHHHHHHHHHHHHhhcccccccceeccccCccchhhhhhHHHHHHHHHHHHHHHHHhHHHHHHcCcchhhH---HHHH
Q 014616 296 YGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELVGTGATFL---ILAG 372 (421)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~---~~~~ 372 (421)
...+...-++...+- +.....+.++.+.+|++.|+++.+..++...+|.++++.+... ....||..... +..+
T Consensus 115 --l~~L~i~R~llGvaE-A~~~A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~ql-l~s~gWr~y~~Ln~Isl~ 190 (511)
T TIGR00806 115 --VWHMQLMEVFYSVTM-AARIAYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQL-LVTLGWISYSTLNIISLV 190 (511)
T ss_pred --HHHHHHHHHHHHHHH-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcCchhHHHHHHHHHH
Confidence 111111111111111 1112445677899999999999999999999999999888877 44567765432 2233
Q ss_pred HHHHHHHHHHhhccCC
Q 014616 373 IAVLAVVFVILFVPET 388 (421)
Q Consensus 373 ~~~~~~~~~~~~~~et 388 (421)
...+++ +..+++|..
T Consensus 191 s~~~a~-~~a~~LP~~ 205 (511)
T TIGR00806 191 FMTFSV-FLALFLKRP 205 (511)
T ss_pred HHHHHH-HHHHhCCCC
Confidence 333333 344556633
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=98.69 E-value=1.7e-07 Score=94.71 Aligned_cols=170 Identities=16% Similarity=0.110 Sum_probs=108.6
Q ss_pred hchHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHhhHHHHHHHHHHHHHHh-hCCCC------
Q 014616 218 YYSPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFI-SGSSA------ 290 (421)
Q Consensus 218 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~l~~~~~-~~~~~------ 290 (421)
...|.+.++.+.++.+.+.+.+.... +..++.++.+++.||.+||+.+..+.+...++.++..+.-. .+.-.
T Consensus 54 ~~l~~iek~F~lss~~~G~i~s~~~i-~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~alphf~~~~y~~~~~~~ 132 (633)
T TIGR00805 54 SSLTTIERRFKLSTSSSGLINGSYEI-GNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFLLSLPHFLSGRYSYSTTVS 132 (633)
T ss_pred hhchhhhhhhCCCCCcceeeeehhhH-HHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHHHhChHHhcCCcccccccc
Confidence 34566777889988887776655544 47888899999999999999988777777777666544311 00000
Q ss_pred ---C-----------C----------------Cc--chhHHHHHHHHHHHHHhhcccccccceeccccCccchhhhhhHH
Q 014616 291 ---S-----------S----------------SG--VYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGM 338 (421)
Q Consensus 291 ---~-----------~----------------~~--~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~p~~~r~~~~g~ 338 (421)
+ . .. ...+..+...-+..........+...++..|.+|++.|+...++
T Consensus 133 ~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~~~~~i 212 (633)
T TIGR00805 133 STGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKNSPLYIGI 212 (633)
T ss_pred ccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCCccccHHHHHH
Confidence 0 0 00 11122222222333334444557777899999999999999999
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHc---------------------C-cchhhHHHHHHHHHHHHHHHhhccCCC
Q 014616 339 SATVNWISNLIVAQTFLTVAELV---------------------G-TGATFLILAGIAVLAVVFVILFVPETQ 389 (421)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~---------------------g-~~~~~~~~~~~~~~~~~~~~~~~~et~ 389 (421)
.++...+|..+++.+.+.+.+.. | |+..|++.+.+.++..+.. ++.|++.
T Consensus 213 ~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~~l~~v~l-~~~p~~l 284 (633)
T TIGR00805 213 LESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVALLTSIPF-FFFPKAL 284 (633)
T ss_pred HHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHH-HhCcccc
Confidence 99999999888877766655432 1 3445666666666655443 4456553
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.68 E-value=4.1e-07 Score=90.51 Aligned_cols=147 Identities=23% Similarity=0.236 Sum_probs=98.9
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHhhHHHHHHHHHHHHHHhhCCCCCCCcchhHHHHHHHHHH
Q 014616 228 GFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLALY 307 (421)
Q Consensus 228 g~~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (421)
..+........++. ..+..+|+++.|.++||+|||++++.+....+++.+..++. ..+.....+=++
T Consensus 114 c~~~~~~~~~~s~~-~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a------------~~~~~~~~~Rfl 180 (521)
T KOG0255|consen 114 CDSSTLVALGQSLF-FLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFA------------PNYWMFLIFRFL 180 (521)
T ss_pred eCcHhHHHHHHHHH-HHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHh------------CcHHHHHHHHHH
Confidence 33333333333343 34478999999999999999999988777666665444332 012233333444
Q ss_pred HHHhhcccccccceeccccCccchhhhhhHHHHHHHHHHHHHHHHHhHHHHHHcCcchhhHHHHHHHHHHHHHHHhhccC
Q 014616 308 IAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELVGTGATFLILAGIAVLAVVFVILFVPE 387 (421)
Q Consensus 308 ~~~~~~g~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~e 387 (421)
.+++..+...+.+.+.+|.++++.|+.+..+ ....+.++..++....++.. +|.+.+++......+..++ +++.||
T Consensus 181 ~G~~~~~~~~~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~--~Wr~~~~~~~~~~~~~~~~-~~l~~E 256 (521)
T KOG0255|consen 181 SGFFGSGPLTVGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITR--DWRWLFWIISIPSGLFLLL-WFLPPE 256 (521)
T ss_pred HHhhccchhHHhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHHH-HHccCc
Confidence 5556667777888899999999999999888 77777777777766666555 6777777766666655444 555568
Q ss_pred CCCC
Q 014616 388 TQGL 391 (421)
Q Consensus 388 t~~~ 391 (421)
+++.
T Consensus 257 s~rw 260 (521)
T KOG0255|consen 257 SPRW 260 (521)
T ss_pred ChHH
Confidence 7554
|
|
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=98.67 E-value=2.9e-07 Score=89.42 Aligned_cols=132 Identities=19% Similarity=0.305 Sum_probs=110.9
Q ss_pred hhhhHHHHhhhhhhhcccchh--HHHHHHHHHHHHHHHHHHh--------cCChhHHHHHHHHHHhhhhhhhhhHHHHHh
Q 014616 3 LVGAIVGAASGGWINDAYGRK--KATLLADVVFTAGAIIMAA--------APDPYVLILGRLLVGLGVGIASVTAPVYIA 72 (421)
Q Consensus 3 ~ig~~~g~~~~g~l~dr~Grr--~~~~~~~~l~~i~~~~~~~--------~~s~~~l~~~R~l~G~g~g~~~~~~~~~i~ 72 (421)
.+..++|++++|++.||+|.| +++..+++++.+..+...+ .++.+.+.+.-++.|+..|+..+.+.++.+
T Consensus 327 ~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~~~i~~~g~~G~~~~~~g~~~~~~f~~~a~~~G~~~G~~qs~sRs~~~ 406 (477)
T PF11700_consen 327 QIVAIIGALLFGWLQDRFGPKTKRTLLISLILWIIIPLYGLFGFWPSFFGLKSPWEFWVLAVLIGLFMGGIQSASRSLFS 406 (477)
T ss_pred HHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHhhhcccCcccHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 356789999999999999999 8999999888777766555 678889999999999999999999999999
Q ss_pred hcCCCCCccchhchHHHHHHHHHHHHHHHhhhcccCCccchHHHHhhHHHHHHHHHHhhcCC
Q 014616 73 EASPSEVRGGLVSTNVLMITSGQFLSYLVNLAFTEVPGTWRWMLGVSAVPAIIQFVLMLFMP 134 (421)
Q Consensus 73 e~~p~~~rg~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~Wr~~f~~~~~~~l~~~~~~~~~~ 134 (421)
|..|+++.+...+.+....-....+||++-..+....++-|+.+....+..++.+++..+++
T Consensus 407 ~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg~~r~g~~~l~~lf~~gl~ll~~v~ 468 (477)
T PF11700_consen 407 RLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDATGSQRYGFLFLLVLFLIGLILLFFVD 468 (477)
T ss_pred HhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHhhcc
Confidence 99999999999999988888888899888777766666678887776666666666555544
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=98.66 E-value=1.6e-06 Score=78.95 Aligned_cols=69 Identities=26% Similarity=0.413 Sum_probs=57.7
Q ss_pred hhHHHHhhhhhhhcccchhHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHhhhhhhhhhHHHH-Hhhc
Q 014616 5 GAIVGAASGGWINDAYGRKKATLLADVVFTAGAIIMAAAPDPYVLILGRLLVGLGVGIASVTAPVY-IAEA 74 (421)
Q Consensus 5 g~~~g~~~~g~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~s~~~l~~~R~l~G~g~g~~~~~~~~~-i~e~ 74 (421)
..++-..+.|.++||+|||+.-+.-.+++++.++. -..+++..++++|++.|++....+.+-.+. +.|.
T Consensus 81 Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl~-k~~~~~~~L~~GRvlgGiaTSLLfS~FEsW~V~Eh 150 (354)
T PF05631_consen 81 SSAIFGTFVGSLADRYGRKKACLLFCILYSLSCLT-KHSSNYPVLLLGRVLGGIATSLLFSAFESWMVHEH 150 (354)
T ss_pred HHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHH-HhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555577899999999999999999999999964 556899999999999999999999888774 4443
|
|
| >KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.64 E-value=5.4e-07 Score=86.38 Aligned_cols=135 Identities=20% Similarity=0.180 Sum_probs=76.0
Q ss_pred HHHHHHHHHHHHHhhcCChhHHHHhhHHHHHHHHHHHHHHhhCCCCCCCcchhHHHHHHHHHHHHHhhcccccccceecc
Q 014616 245 TNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLALYIAFFAPGMGPVPWTLNS 324 (421)
Q Consensus 245 ~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 324 (421)
+.++|+...++++||+|||..+........++.+++......... -..+.+=.+.. ............+..
T Consensus 72 G~~~Gs~~~~~la~~~GRK~~l~~~~~l~~~~~~~~~~s~~~~~~--------e~li~GR~i~G-l~~gl~~~~~pmyl~ 142 (485)
T KOG0569|consen 72 GGMIGSFSSGLLADRFGRKNALLLSNLLAVLAALLMGLSKSAPSF--------EMLILGRLIVG-LACGLSTGLVPMYLT 142 (485)
T ss_pred HHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhhhH--------HHHHHHHHHHH-HHhHHHHHHHHHHHh
Confidence 468999999999999999988877777766666666554322110 11111111110 011111122234789
Q ss_pred ccCccchhhhhhHHHHHHHHHHHHHHHHHhHHHHHHcC----cchhhHHHHHHHHHHHHHHHhhccCCCCC
Q 014616 325 EVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELVG----TGATFLILAGIAVLAVVFVILFVPETQGL 391 (421)
Q Consensus 325 e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g----~~~~~~~~~~~~~~~~~~~~~~~~et~~~ 391 (421)
|..|++.||....+......+|..++..... ....| |...+..-.+.+++. ...+.+.||+.+.
T Consensus 143 E~sP~~~RG~~g~~~~~~~~~g~ll~~~~~l--~~ilGt~~~W~~l~~~~~i~~~~~-l~~l~~~PESPk~ 210 (485)
T KOG0569|consen 143 EISPKNLRGALGTLLQIGVVIGILLGQVLGL--PSLLGTEDLWPYLLAFPLIPALLQ-LALLPFLPESPKY 210 (485)
T ss_pred hcChhhhccHHHHHHHHHHHHHHHHHHHHcc--HHhcCCCcchHHHHHHHHHHHHHH-HHHHhcCCCCcch
Confidence 9999999999887777777777665533221 12333 222222222222333 3445667999654
|
|
| >KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.64 E-value=1.8e-07 Score=84.85 Aligned_cols=148 Identities=23% Similarity=0.214 Sum_probs=93.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHhhHHHHHHHHHHHHHHhhCCCCCCCcchhHHHHHHHHHHHHHh
Q 014616 232 NQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLALYIAFF 311 (421)
Q Consensus 232 ~~~~~~~~~~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (421)
...+++....+....++.++.+|.++||+|||..+..+....++...+.+..- ++ .+.+. .=+....
T Consensus 67 ~~yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S~----------~F--~afv~-aR~l~Gi 133 (451)
T KOG2615|consen 67 VFYAGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALSR----------NF--AAFVL-ARFLGGI 133 (451)
T ss_pred chhhhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHHH----------HH--HHHHH-HHHhhhh
Confidence 34455555555556889999999999999999998877766666544433210 11 11111 0111222
Q ss_pred hcccccccceeccccCccchhhhhhHHHHHHHHHHHHHHHHHhHHHHH---HcCcchhhH-HHHHHH-HHH-HHHHHhhc
Q 014616 312 APGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAE---LVGTGATFL-ILAGIA-VLA-VVFVILFV 385 (421)
Q Consensus 312 ~~g~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~---~~g~~~~~~-~~~~~~-~~~-~~~~~~~~ 385 (421)
..|.-.+.-++++|++++++|+.+.+..++...+|.+++|.+-+++.. ..|....+. .+.... ... ...+.+++
T Consensus 134 ~kgnl~v~rAiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~f~~~~g~~p~alP~~~v~i~a~~~v~~~~~~l 213 (451)
T KOG2615|consen 134 FKGNLSVIRAIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQFSSISGSYPFALPCLLVFILAAGDVTFFPWFL 213 (451)
T ss_pred ccCchHHHHHHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHhhHhhhccCchHHHHHHHHHHHHHHHHHHHHhC
Confidence 345556667889999999999999999999999998888888777665 444333332 222222 222 34556678
Q ss_pred cCCCCCC
Q 014616 386 PETQGLT 392 (421)
Q Consensus 386 ~et~~~~ 392 (421)
|||-+.+
T Consensus 214 pETL~~r 220 (451)
T KOG2615|consen 214 PETLPLR 220 (451)
T ss_pred Cccccch
Confidence 9995444
|
|
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=98.63 E-value=1.5e-06 Score=95.01 Aligned_cols=110 Identities=13% Similarity=0.139 Sum_probs=71.7
Q ss_pred HHHHHHHHHHHHHHHHhhcCChhHHHHhhHHHHHHHHHHHHHHhhCCCCCCCcchhHHHHHHHHHHHHHhhcccccccce
Q 014616 242 VAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLALYIAFFAPGMGPVPWT 321 (421)
Q Consensus 242 ~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 321 (421)
+....+++++++|+++||+|||++++.+..+.++..++..+...... . +...+. .+...+......+...+
T Consensus 56 ~~l~~~l~~~~~G~l~Dr~grk~~l~~~~~~~~~~~~~~~~~~~~~~-------~-~~l~~~-r~l~G~~~~~~~~~~~~ 126 (1146)
T PRK08633 56 FLLPFLLLSSPAGFLADKFSKNRVIRIVKLFEVGLTLLIVLAYYLGW-------F-WLAFAV-TFLLGAQSAIYSPAKYG 126 (1146)
T ss_pred HHHHHHHHhhhHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHcc-------H-HHHHHH-HHHHHHHHHhhchHHHh
Confidence 33446788899999999999999887665444333333322211110 1 111111 11122222334466677
Q ss_pred eccccCccchhhhhhHHHHHHHHHHHHHHHHHhHHHHHH
Q 014616 322 LNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAEL 360 (421)
Q Consensus 322 ~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 360 (421)
+..|.+|++.|+.+.++..+...++..+++.+.+.+.+.
T Consensus 127 ~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~ 165 (1146)
T PRK08633 127 IIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLFES 165 (1146)
T ss_pred hhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 889999999999999999999999998888887777665
|
|
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=98.63 E-value=8.5e-07 Score=87.20 Aligned_cols=182 Identities=15% Similarity=0.127 Sum_probs=104.4
Q ss_pred HhhcchhHHHHHHHHHHHHHHHhhcCcceehhchHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHH
Q 014616 187 DVFKSKEIRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLA 266 (421)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~grr~~~ 266 (421)
..+|+|.++..+........ ....... -.+-+..+...++...+..... ...-.++.++++|.++||++||+++
T Consensus 5 aplr~~~Fr~lw~a~~iS~l-G~~~~~v----a~~wlv~~lt~S~~~valv~~a-~~LP~~Llsl~aG~laDr~drrril 78 (524)
T PF05977_consen 5 APLRNRNFRRLWIAQLISNL-GDWMQTV----ALAWLVTQLTGSPLMVALVQAA-STLPILLLSLFAGALADRFDRRRIL 78 (524)
T ss_pred ccccCchHHHHHHHHHHHHH-HHHHHHH----HHHHHHHHHhCCHHHHHHHHHH-HHHHHHHHHHHHHHHhhcccchHHH
Confidence 34677777765544332211 1111111 1222233333444444443333 3334567788899999999999998
Q ss_pred HHhhHHHHHHHHHHHHHHhhCCCCCCCcchhHHHHHHHHHHHHHhhcccccccceeccccCccchhhhhhHHHHHHHHHH
Q 014616 267 LSSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWIS 346 (421)
Q Consensus 267 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~ 346 (421)
+..-....+....+......+.. + .+..+ .+.+.......-..|...+...|+.|+++...+.++.++..++.
T Consensus 79 i~~~~~~~~~~~~L~~l~~~~~~-~-----~~~Ll-~~~fl~g~~~a~~~PA~~A~ip~lV~~~~L~~A~al~s~~~nia 151 (524)
T PF05977_consen 79 ILSQLLRALVALLLAVLAFFGLL-S-----PWLLL-ILTFLLGIGSAFFNPAWQAIIPELVPKEDLPAANALNSISFNIA 151 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHhCcC-C-----HHHHH-HHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHH
Confidence 87665544444433332222111 1 11111 11111111111224666778899999999999999999999999
Q ss_pred HHHHHHHhHHHHHHcCcchhhHHHHHHHHHHHHHH
Q 014616 347 NLIVAQTFLTVAELVGTGATFLILAGIAVLAVVFV 381 (421)
Q Consensus 347 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 381 (421)
..++|.+.+.+....|....|.+-+...++.....
T Consensus 152 r~iGPalgG~Lva~~G~~~~f~inalsfl~~i~~l 186 (524)
T PF05977_consen 152 RIIGPALGGILVAFFGAAAAFLINALSFLISILAL 186 (524)
T ss_pred HhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999888888887777776665544443333
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.63 E-value=1.4e-06 Score=84.23 Aligned_cols=149 Identities=17% Similarity=0.192 Sum_probs=110.4
Q ss_pred HcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHhhHHHHHHHHHHHHHHhhCCCCCCCcchhHHHHHHHH
Q 014616 226 MAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLA 305 (421)
Q Consensus 226 ~~g~~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (421)
+++.+..+.+.+.+....+ .+++.+.+|++.||+|.|+++..+.....++..+..+....+. + .+...=
T Consensus 67 ~~~ws~~~k~~i~ss~~~G-~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~~~---------~-~~~~~R 135 (466)
T KOG2532|consen 67 EYDWSSTEKGLIFSSFFWG-YILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASIGF---------Y-LLLVLR 135 (466)
T ss_pred eecCCHHHHHHHHHHHHHH-HHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHhcc---------h-hhHHHH
Confidence 4567777888888887776 6899999999999999999988887777777777666532221 0 111111
Q ss_pred HHHHHhhcccccccceeccccCccchhhhhhHHHHHHHHHHHHHHHHHhHHHHHH-cCcchhhHHHHHHHHHHHHHHHhh
Q 014616 306 LYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAEL-VGTGATFLILAGIAVLAVVFVILF 384 (421)
Q Consensus 306 ~~~~~~~~g~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~ 384 (421)
+...+......|....+..+-.|++.|++..++..+...+|.++...+.+.+-+. .||...|++.+.+.++..++.+.+
T Consensus 136 ~lqGl~~g~~~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~~ 215 (466)
T KOG2532|consen 136 FLQGLGQGVLFPAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFILWFLF 215 (466)
T ss_pred HHhHHHHhHHHhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHHHHHHH
Confidence 1111222223355667778999999999999999999999999988888888887 899999999999998876655544
Q ss_pred c
Q 014616 385 V 385 (421)
Q Consensus 385 ~ 385 (421)
.
T Consensus 216 ~ 216 (466)
T KOG2532|consen 216 Y 216 (466)
T ss_pred h
Confidence 4
|
|
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.62 E-value=1.7e-06 Score=83.93 Aligned_cols=132 Identities=17% Similarity=0.026 Sum_probs=79.6
Q ss_pred ceehhchHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHhhHHHHHHHHHHHHHHhhCCCCCCC
Q 014616 214 NTVMYYSPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSS 293 (421)
Q Consensus 214 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 293 (421)
.....+.|.+.++.|.+..+.+....... ....++.+..|+++||+|||+.+..+.....++.++....... .
T Consensus 43 ~~~~~~~p~i~~~~~~s~~~~gl~~~~~~-~g~~i~~~~~g~l~dr~G~r~~l~~g~~~~~~~~~l~~~~~~a---~--- 115 (438)
T PRK10133 43 NLNDILLPQFQQAFTLTNFQAGLIQSAFY-FGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEI---M--- 115 (438)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhc---C---
Confidence 34445678888889998887776665554 4578999999999999999999888777666665443211111 0
Q ss_pred cchhHHHHHHHHHHHHHhhcccccccceeccccCccchhhhhhHHHHHHHHHHHHHHHHHhH
Q 014616 294 GVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFL 355 (421)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~ 355 (421)
.+. ....+..+ .........+....+..|..|++.|....+.......+|..+++....
T Consensus 116 -~~~-~ll~~r~l-~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~ 174 (438)
T PRK10133 116 -NYT-LFLVGLFI-IAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQ 174 (438)
T ss_pred -CHH-HHHHHHHH-HHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111 11111111 111111122333445567666776666677777777788777765543
|
|
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=98.60 E-value=1.9e-06 Score=81.21 Aligned_cols=144 Identities=19% Similarity=0.157 Sum_probs=89.4
Q ss_pred ehhchHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHhhHHHHHHHHHHHHHHhhCCCCCCCcc
Q 014616 216 VMYYSPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGV 295 (421)
Q Consensus 216 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 295 (421)
.....|.+.++.|.+..+.+...+....+ ..++.+..|+++||+|||+.+..+.....++.... . . .+ .
T Consensus 19 ~~~~lp~l~~~~~~s~~~~g~~~s~~~~~-~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~---~---~~---~ 87 (355)
T TIGR00896 19 VGPLLPQIRSALGMSFSVAGLLTALPVLC-FAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR-S---A---PG---T 87 (355)
T ss_pred CcccHHHHHHHhCCCHHHHHHHHHHHHHH-HHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH-H---h---cc---H
Confidence 34467888889999988888777666554 78999999999999999998776554433333221 1 0 11 1
Q ss_pred hhHHHHHHHHHHHHHhhcccccccceeccccCccchhhhhhHHHHHHHHHHHHHHHHHhHHHHHHcC--cchhhHHHHHH
Q 014616 296 YGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELVG--TGATFLILAGI 373 (421)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g--~~~~~~~~~~~ 373 (421)
+..+..-.+ ..+......+.......|.+| ++|+.+.+..++...++..+++...+.+.+..+ |...|...+..
T Consensus 88 --~~l~~~~~~-~g~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~~~w~~~f~~~~~~ 163 (355)
T TIGR00896 88 --ALLFAGTAL-IGVGIAIINVLLPSLIKRDFP-QRVGLMTGLYSMALMGGAALAAAATVPLAQHSGGHWQQALAWWALP 163 (355)
T ss_pred --HHHHHHHHH-HHHHHHHHhccchHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 111111111 111111112233345567776 579999999999888988888877777666543 55556555544
Q ss_pred H
Q 014616 374 A 374 (421)
Q Consensus 374 ~ 374 (421)
.
T Consensus 164 ~ 164 (355)
T TIGR00896 164 A 164 (355)
T ss_pred H
Confidence 3
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=98.59 E-value=1.4e-06 Score=83.25 Aligned_cols=175 Identities=16% Similarity=0.135 Sum_probs=102.0
Q ss_pred HHHhhcCcceehhchHHHHHHcCCCChHHHHHH--HHHHHHHHHHHHHHH-HHHHhhcCChhHHHHhhHHHHHHHHHHHH
Q 014616 206 AFQQFTGINTVMYYSPTIVQMAGFQSNQLALLL--SLAVAGTNAVGTIVG-IYLIDHFGRKKLALSSLAGVIISLVLLSW 282 (421)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~--~~~~~~~~~~g~~~~-g~l~dr~grr~~~~~~~~~~~~~~~~l~~ 282 (421)
++.+...+.....+.|.++++.|.+..+.+.+. .++... .++..++. ++..||.||||..+....... +.....+
T Consensus 10 y~~~g~~~~~~~p~lp~~l~~~g~~~~~iGl~~~~~l~~~~-~~l~~p~~~~~~~~~~g~r~~~i~~~~~~~-~~~~~~~ 87 (390)
T TIGR02718 10 YLSQGIPIGLAMDALPTLLREDGAPLTALAFLPLVGLPWVV-KFLWAPLVDNWWSWRLGRRRSWVLPMQCLV-SACLASL 87 (390)
T ss_pred HHHHHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH-HHHHHHHHhccccccCCcchhHHHHHHHHH-HHHHHHH
Confidence 344444445555678899999999998888863 444444 44455444 667899998887544332211 1111111
Q ss_pred HHhhCCCCCCCcchhHHHHHHHHHHHHHhhcccccccceeccccCccchhhhhhHHHHHHHHHHHHHHHHHhHHHHHHcC
Q 014616 283 AFISGSSASSSGVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELVG 362 (421)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g 362 (421)
.... ... ....+.. ... ....++....-+....+..|..+++.++...+.......+|..+++.....+.+..+
T Consensus 88 ~~~~-~~~---~~~~~~~-~~~-~~~~~~~a~~d~~~d~~~~~~~~~~~~~~~~~~~~~g~~lG~~~g~~~~~~l~~~~g 161 (390)
T TIGR02718 88 ALVG-PDV---AGAGWAV-GLL-ACASLASATQDIATDGMAAEHFNGRTLAKGNAVQIAGVMIGFFGGGAGTLVLFGKFG 161 (390)
T ss_pred HcCC-cch---hhHHHHH-HHH-HHHHHHHHHHHHHHHHHHHHhCCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 1110 000 1111111 111 111122222223333456777788877777777776678888888877788888899
Q ss_pred cchhhHHHHHHHHHHHHHHHhhccCC
Q 014616 363 TGATFLILAGIAVLAVVFVILFVPET 388 (421)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~et 388 (421)
|+..|++.++..++..+..++..||+
T Consensus 162 w~~~f~~~a~l~~~~~~~~~~~~~~~ 187 (390)
T TIGR02718 162 QRPAFLLVACVPLASLVCVLWLKDRA 187 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 99999999888777666555554443
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=98.57 E-value=6.5e-07 Score=85.82 Aligned_cols=124 Identities=11% Similarity=0.041 Sum_probs=98.8
Q ss_pred hhHHHHhhhhhhhcccchhHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHhhhhhhhhhHHHHHhhcCCCCCccchh
Q 014616 5 GAIVGAASGGWINDAYGRKKATLLADVVFTAGAIIMAAAPDPYVLILGRLLVGLGVGIASVTAPVYIAEASPSEVRGGLV 84 (421)
Q Consensus 5 g~~~g~~~~g~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~s~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg~~~ 84 (421)
...++.+..|++.||+|||+.+.++.++.++...+...++|.+.++..++++|++.+........+..+..|++.++...
T Consensus 266 ~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~at~~ 345 (396)
T TIGR00882 266 LNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSSFATTALEVVILKMLHAFEVPFLLVGCFKYITSQFDVRLSATIY 345 (396)
T ss_pred HHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcceEEEee
Confidence 45566788899999999999999999999998888788889998999999999998877777777888888888777655
Q ss_pred ch-HHHHHHHHHHHHHHHhhhcccCCccchHHHHhhHHHHHHHHHH
Q 014616 85 ST-NVLMITSGQFLSYLVNLAFTEVPGTWRWMLGVSAVPAIIQFVL 129 (421)
Q Consensus 85 ~~-~~~~~~~g~~l~~~~~~~~~~~~~~Wr~~f~~~~~~~l~~~~~ 129 (421)
+. .+.....|..+++.+.+.+.+.. +|+..|.+.++..++..++
T Consensus 346 ~~~~~~~~~lg~~~~~~l~G~l~~~~-G~~~~f~~~~~~~~i~~~~ 390 (396)
T TIGR00882 346 LIGFQFAKQLAMIFLSTLAGNMYDSI-GFQGAYLVLGCIVLLFTLI 390 (396)
T ss_pred hHHHHHHHHHHHHHHHHhHHHHHHhc-ccHHHHHHHHHHHHHHHHH
Confidence 44 45667778888887777766544 4999999888766655443
|
|
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=98.54 E-value=7.9e-07 Score=86.36 Aligned_cols=103 Identities=17% Similarity=0.193 Sum_probs=83.9
Q ss_pred hhhhHHHHhhhhhhhcccchhHHHHHHHHHHHHHHHHHHhc-CChhHHHHHHHHHHhhhhhhhhhHHHHHhhcCC-----
Q 014616 3 LVGAIVGAASGGWINDAYGRKKATLLADVVFTAGAIIMAAA-PDPYVLILGRLLVGLGVGIASVTAPVYIAEASP----- 76 (421)
Q Consensus 3 ~ig~~~g~~~~g~l~dr~Grr~~~~~~~~l~~i~~~~~~~~-~s~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p----- 76 (421)
.++.+++.++.++++||+|||+++.++.++..++.....+. ++...+.+..++.|++.+...+...++++|..|
T Consensus 267 ~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 346 (437)
T TIGR00792 267 IVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFFFAGSNLPLILVLIILAGFGQNFVTGLVWALVADTVDYGEWK 346 (437)
T ss_pred HHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhh
Confidence 46778899999999999999999999998888887777665 356677788899999999999999999999875
Q ss_pred --CCCccchhchHHHHHHHHHHHHHHHhhhc
Q 014616 77 --SEVRGGLVSTNVLMITSGQFLSYLVNLAF 105 (421)
Q Consensus 77 --~~~rg~~~~~~~~~~~~g~~l~~~~~~~~ 105 (421)
++++|.+.+..+.....|..+++.+.+.+
T Consensus 347 ~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~l 377 (437)
T TIGR00792 347 TGVRAEGLVYSVRTFVRKLGQALAGFLVGLI 377 (437)
T ss_pred cCccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567788888777778877777666554
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=98.53 E-value=7.8e-07 Score=81.25 Aligned_cols=121 Identities=28% Similarity=0.389 Sum_probs=93.3
Q ss_pred hhhhHHHHhhhhhhhcccchhHHHHHHHHHHHHHHHHHHhcCC--hhHHHHHHHHHHhhhhhhhhhHHHHHhhcCCC-CC
Q 014616 3 LVGAIVGAASGGWINDAYGRKKATLLADVVFTAGAIIMAAAPD--PYVLILGRLLVGLGVGIASVTAPVYIAEASPS-EV 79 (421)
Q Consensus 3 ~ig~~~g~~~~g~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~s--~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~-~~ 79 (421)
.++..+++++.|.++||+|||+.+..+.....++.+.+++..+ ...+++.|+++|++.+...+....++.|+.|+ ++
T Consensus 49 ~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 128 (338)
T COG0477 49 FLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAPNVGLALLLILRLLQGLGGGGLLPVASALLSEWFPEATE 128 (338)
T ss_pred HHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCchhH
Confidence 4667788899999999999998888888777777778888777 89999999999999999999999999999998 66
Q ss_pred ccchhchHHH-HHHHHHHHHHHHhhhccc-CCccchHHHHhhHHHH
Q 014616 80 RGGLVSTNVL-MITSGQFLSYLVNLAFTE-VPGTWRWMLGVSAVPA 123 (421)
Q Consensus 80 rg~~~~~~~~-~~~~g~~l~~~~~~~~~~-~~~~Wr~~f~~~~~~~ 123 (421)
|+...+.... ....|..+++.++..... ...+||+.|.......
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (338)
T COG0477 129 RGLAVGLVTLGAGALGLALGPLLAGLLLGALLWGWRAAFLLAALLG 174 (338)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 7776666555 455666666655443322 2235999666655444
|
|
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=98.53 E-value=7.2e-06 Score=76.82 Aligned_cols=132 Identities=15% Similarity=0.168 Sum_probs=100.9
Q ss_pred hHHHHhhhhhhhcccchhHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHhhhhhhhhhHHHHHhhcCCCCCccchhc
Q 014616 6 AIVGAASGGWINDAYGRKKATLLADVVFTAGAIIMAAAPDPYVLILGRLLVGLGVGIASVTAPVYIAEASPSEVRGGLVS 85 (421)
Q Consensus 6 ~~~g~~~~g~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~s~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg~~~~ 85 (421)
++...++...+.|..+-|++++++.+...+...+.-+.++...+.+.-++-|++.+.. .+..+++-...|+++-.++.+
T Consensus 54 yl~~l~~vflltd~l~Ykpviil~~~~~i~t~~lll~~~sv~~mq~~q~~yg~~~a~e-vay~sYiys~v~~~~yq~vts 132 (412)
T PF01770_consen 54 YLAFLLPVFLLTDYLRYKPVIILQALSYIITWLLLLFGTSVLAMQLMQFFYGLATAAE-VAYYSYIYSVVDKEHYQKVTS 132 (412)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHHHH-HHHHHHheeecCHHHHHHHHH
Confidence 4566778889999999999999999999999999999999999999999999998884 456667777778887777888
Q ss_pred hHHHHHHHHHHHHHHHhhhcccC-CccchHHHHhhHHHHHHHHHHhhcCCcChH
Q 014616 86 TNVLMITSGQFLSYLVNLAFTEV-PGTWRWMLGVSAVPAIIQFVLMLFMPESPR 138 (421)
Q Consensus 86 ~~~~~~~~g~~l~~~~~~~~~~~-~~~Wr~~f~~~~~~~l~~~~~~~~~~esp~ 138 (421)
..-.....|..++.+++-.+... ..+.+...++......+.++..+++|..++
T Consensus 133 ~~raa~l~g~~~s~~lgQllvs~~~~sy~~L~~isl~~~~~a~~~~~fLP~~~~ 186 (412)
T PF01770_consen 133 YTRAATLVGRFISSLLGQLLVSFGGVSYFQLNYISLASVSLALLIALFLPMPKR 186 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHcCCCCc
Confidence 77777777777777777554432 223556666665545555666667776654
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.52 E-value=5.4e-07 Score=83.25 Aligned_cols=133 Identities=22% Similarity=0.318 Sum_probs=113.2
Q ss_pred hhhHHHHhhhhhhhcccchhHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHhhhhhhhhhHHHHHhhcCCCCCccch
Q 014616 4 VGAIVGAASGGWINDAYGRKKATLLADVVFTAGAIIMAAAPDPYVLILGRLLVGLGVGIASVTAPVYIAEASPSEVRGGL 83 (421)
Q Consensus 4 ig~~~g~~~~g~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~s~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg~~ 83 (421)
+..++|.+++|+|.||+|.|+++..+++++.+.++..-+......+.++-++.|...|+..+.+..+..+..|++|-+..
T Consensus 299 vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~~~~~~~~~~~~f~i~gll~g~s~G~~qA~SRSy~~~lvp~~k~~~f 378 (438)
T COG2270 299 VVAALGAIIAGFLDERFGSKPVLMIGLVILSIAALYLIFLEGELDFWILGLLVGTSLGGAQASSRSYLARLVPKGKEGRF 378 (438)
T ss_pred HHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHHHHHHHccccHHHHHHHHHHHHhcchHHHHHHHHHHHhCCCccccce
Confidence 45678999999999999999999999999999999888888888888899999999999999999999999999999999
Q ss_pred hchHHHHHHHHHHHHHHHhhhcccCCccchHHHHhhHHHHHHHHHHhhcCCcC
Q 014616 84 VSTNVLMITSGQFLSYLVNLAFTEVPGTWRWMLGVSAVPAIIQFVLMLFMPES 136 (421)
Q Consensus 84 ~~~~~~~~~~g~~l~~~~~~~~~~~~~~Wr~~f~~~~~~~l~~~~~~~~~~es 136 (421)
.+.+....-.+..+|+.+-..++...++-|.-+....+..++.++...++|+.
T Consensus 379 Fglyaltgra~S~~gp~lv~v~t~iTg~~r~g~~~i~vll~iGl~~L~~v~~~ 431 (438)
T COG2270 379 FGLYALTGRAASFLGPFLVAVITQITGSSRAGVLSIIVLLLIGLLLLLRVKVP 431 (438)
T ss_pred eehhhhhhhHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhhHhhEEeecCC
Confidence 99999888888888887777766666667777666655555555555566554
|
|
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=98.51 E-value=9.6e-07 Score=86.92 Aligned_cols=155 Identities=19% Similarity=0.191 Sum_probs=87.4
Q ss_pred chHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHhhHHHHHHHHHHHHHHhhCCCCCCCcchhH
Q 014616 219 YSPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGW 298 (421)
Q Consensus 219 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 298 (421)
.++.+.++.|.++.. +++... ......++.++.|+++|.+|||..++.+.+...++.+..+.+ .+ ..
T Consensus 66 ~l~~I~~diG~~~~~-~w~~~~-~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~atA------~~---~~-- 132 (599)
T PF06609_consen 66 ILPYINADIGGSDNW-SWFSTA-WTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCATA------QN---MN-- 132 (599)
T ss_pred HHHHHHHhcCCCccc-hHHHHH-HHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHhhcC------Cc---HH--
Confidence 345666777776443 344433 444567888889999999999999887766666555443221 11 11
Q ss_pred HHHHHHHHHHHHhhcccccccceeccccCccchhhhhhHHHHHHHHHHHHHHHHHhHHHHHHcCcchhhHHHHHHHHHHH
Q 014616 299 IAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELVGTGATFLILAGIAVLAV 378 (421)
Q Consensus 299 ~~~~~~~~~~~~~~~g~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 378 (421)
..+.+..++.. +.|...+.....+|+.|.+.|..+.++......+...+++..........+|.|.|++.+....++.
T Consensus 133 ~~iag~~l~Gv--gaG~~~~~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~WRw~~~~~~i~~~i~~ 210 (599)
T PF06609_consen 133 TFIAGMVLYGV--GAGVQELAALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAAHSGWRWIFYIFIIWSGIAL 210 (599)
T ss_pred HHHHHHHHHHH--hhHHHHHHHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhccCCCcchHHHHHHHHHHHHH
Confidence 12222222211 1223333344579999999998776554433323222333333233334578888888877766654
Q ss_pred HH-HHhhccCC
Q 014616 379 VF-VILFVPET 388 (421)
Q Consensus 379 ~~-~~~~~~et 388 (421)
+. ++++.|.+
T Consensus 211 vl~~~fY~PP~ 221 (599)
T PF06609_consen 211 VLIFFFYFPPP 221 (599)
T ss_pred HHHHHHhCCCc
Confidence 43 34445544
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.50 E-value=1.4e-06 Score=83.16 Aligned_cols=123 Identities=15% Similarity=0.080 Sum_probs=95.2
Q ss_pred hhhHHHHhhhhhhhcccchhHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHhhhhhhhhhHHHHHhhcCCCCCccch
Q 014616 4 VGAIVGAASGGWINDAYGRKKATLLADVVFTAGAIIMAAAPDPYVLILGRLLVGLGVGIASVTAPVYIAEASPSEVRGGL 83 (421)
Q Consensus 4 ig~~~g~~~~g~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~s~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg~~ 83 (421)
++.+++.++.|++.||+|+|+.+..+.+..++..+..+++++++.+++..++.|++.+...+....++.+. +++++++.
T Consensus 251 ~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~-~~~~~~~~ 329 (382)
T PRK11128 251 VAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLMGSTTALPWLIVIQILHCGTFTVCHLAAMRYIAAR-PGSEVIRL 329 (382)
T ss_pred HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CHhhhHHH
Confidence 46677778899999999999999999999888888888899999999999999999999999999888886 55556776
Q ss_pred hchHH-HHHHHHHHHHHHHhhhcccCCccchHHHHhhHHHHHHHHHH
Q 014616 84 VSTNV-LMITSGQFLSYLVNLAFTEVPGTWRWMLGVSAVPAIIQFVL 129 (421)
Q Consensus 84 ~~~~~-~~~~~g~~l~~~~~~~~~~~~~~Wr~~f~~~~~~~l~~~~~ 129 (421)
.+... .....|..+++.+++.+.+..+ + ..|+..+..+++.+++
T Consensus 330 ~~~~~~~~~~~g~~ig~~i~G~l~~~~g-~-~~~~~~~~~~~~~~~~ 374 (382)
T PRK11128 330 QALYSALAMGGSIAIMTVLSGFLYQHLG-A-GVFWVMALVALPALFI 374 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcc-H-HHHHHHHHHHHHHHHH
Confidence 66654 4445666777887777766554 5 3566555555554443
|
|
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=98.47 E-value=4.3e-06 Score=80.99 Aligned_cols=171 Identities=15% Similarity=0.101 Sum_probs=97.6
Q ss_pred hchHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHh----hcCChhHHHHh-hHHHHHHHHHHHHHHhhC----C
Q 014616 218 YYSPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLID----HFGRKKLALSS-LAGVIISLVLLSWAFISG----S 288 (421)
Q Consensus 218 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~g~l~d----r~grr~~~~~~-~~~~~~~~~~l~~~~~~~----~ 288 (421)
.+.+.+++..|.+....+...... .....+..++.|+++| |+|||+..+.. .....+++.++.+.-... .
T Consensus 25 ~~l~~yl~~lg~~~~~~~~i~~~~-~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~~l~ll~~~~~~~~~~~~ 103 (477)
T TIGR01301 25 SLLTPYVQELGIPHAWASIIWLCG-PLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAFAVILIGFAADIGHLFGD 103 (477)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHH-HHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHHHHHHHHHhCchhhhhccc
Confidence 345557788898877666555443 3457888899999999 59999987754 344444444433211000 0
Q ss_pred C-CCCCcchh-HHHHHHHHHHHHHhhcccccccceeccccCccchh--hhhhHHHHHHHHHHHHHHHHHhHHH--HHHc-
Q 014616 289 S-ASSSGVYG-WIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYR--GICGGMSATVNWISNLIVAQTFLTV--AELV- 361 (421)
Q Consensus 289 ~-~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~p~~~r--~~~~g~~~~~~~~~~~~~~~~~~~~--~~~~- 361 (421)
. ........ +..+.++.+.. +......+..-++..|.+|+++| +.+.+..+....+|+.+++...... .+..
T Consensus 104 ~~~~~~~~~~i~~~~i~~~lld-~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~~~~~~~~~~ 182 (477)
T TIGR01301 104 NLDKKTKPRAIIVFVVGFWILD-VANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGAYSGLYKIFP 182 (477)
T ss_pred cccccchhHHHHHHHHHHHHHH-HHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcc
Confidence 0 00000111 12222222211 11111222335678999998876 4678887888888887776655432 1211
Q ss_pred ------------CcchhhHHHHHHHHHHHHHHHhhccCCCC
Q 014616 362 ------------GTGATFLILAGIAVLAVVFVILFVPETQG 390 (421)
Q Consensus 362 ------------g~~~~~~~~~~~~~~~~~~~~~~~~et~~ 390 (421)
+....|++.+.+++++..+.++..||.+.
T Consensus 183 ~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~~ 223 (477)
T TIGR01301 183 FTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKENPL 223 (477)
T ss_pred cccccccccccchHHHHHHHHHHHHHHHHHHHeeeeeccCC
Confidence 22356777777777777777777888754
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.43 E-value=8.2e-06 Score=80.96 Aligned_cols=142 Identities=23% Similarity=0.230 Sum_probs=86.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHhhHHHHHHHHHHHHHHhhCCCCCCCcchhHHHHHHHHHHHHHhhcc
Q 014616 235 ALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLALYIAFFAPG 314 (421)
Q Consensus 235 ~~~~~~~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 314 (421)
+.+.+... .+..++.++.|+++|++|||+.++.+.+...++.++...+. + . .....+=.+ ..+...+
T Consensus 92 s~~~s~~~-lga~~g~l~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~~a~------~----~-~~l~~GR~l-~G~g~G~ 158 (513)
T KOG0254|consen 92 GLLTSILN-LGALVGSLLAGRLGDRIGRKKTLLLAVVLFLIGAIIIALAP------S----W-YQLIVGRIL-TGLGVGG 158 (513)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhh------h----H-HHHHHHHHH-hccchhh
Confidence 45444444 44789999999999999999998887777777776665532 0 0 111111111 1122222
Q ss_pred cccccceeccccCccchhhhhhHHHHHHHHHHHHHHHHHhHHHHHHc--CcchhhHHHHHHHHHHHHHHHhhccCCCCC
Q 014616 315 MGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELV--GTGATFLILAGIAVLAVVFVILFVPETQGL 391 (421)
Q Consensus 315 ~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~--g~~~~~~~~~~~~~~~~~~~~~~~~et~~~ 391 (421)
...+...+.+|..|++.||...........+|..++ +......+.. +|...+.+....+++..+. .++.||+.+.
T Consensus 159 ~~~~~piy~sEiap~~~RG~l~~~~~l~~~~Gi~~~-~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~-~~~~pesp~~ 235 (513)
T KOG0254|consen 159 ASVLAPVYISEIAPAHIRGTLVSLYQLFITIGILLG-YCINYGTSKVYAGWRIPLGLALIPAVILALG-MLFLPESPRW 235 (513)
T ss_pred hhhcchhhHhhcCChhhhHHHHHHHHHHHHHHHHHH-HHHhhhhccCCccHHHHHHHHHHHHHHHHHH-HHhCCCChHH
Confidence 234445688999999999998887777766665554 4444434332 5654444444444444444 6677887543
|
|
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=98.42 E-value=0.00027 Score=67.43 Aligned_cols=129 Identities=20% Similarity=0.238 Sum_probs=76.0
Q ss_pred chHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHhhHHHHHHHHHHHHHHhhCCCCCCCcchhH
Q 014616 219 YSPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGW 298 (421)
Q Consensus 219 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 298 (421)
....|+...|+++...+...... .+.++.|+++..++.+|+|..+.-..+...-..++.+....+....... +.....
T Consensus 280 lmt~yl~~~G~s~~~igi~R~~g-av~Gl~gT~~~p~l~~riGlvr~G~~~l~~q~~~L~~~v~~~~~~~~~~-~~~s~~ 357 (432)
T PF06963_consen 280 LMTAYLKSQGYSPSVIGIFRGLG-AVFGLLGTWVYPWLMKRIGLVRAGLWSLWWQWVCLALCVVSFWAPGSPF-SSISAY 357 (432)
T ss_pred HHHHHHHHCCCCHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcCCCCc-hhhHHH
Confidence 34556677799988887766654 4457899999999999999887766555544444433332222222110 111112
Q ss_pred HHHHHHHHHHHHhhcccccccceeccccCccchhhhhhHHHHHHHHHHHHHH
Q 014616 299 IAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIV 350 (421)
Q Consensus 299 ~~~~~~~~~~~~~~~g~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~ 350 (421)
..+.+... .=+..-+.=....-...|..|++.||...|+.++.+++...+.
T Consensus 358 ~l~~gi~~-SR~GLW~fDL~~~qi~Qe~V~~~~Rg~v~gvq~sl~~lf~ll~ 408 (432)
T PF06963_consen 358 LLLGGIAL-SRIGLWSFDLAVTQIMQENVPESERGAVSGVQNSLQSLFELLS 408 (432)
T ss_pred HHHHHHHH-HHHHHHhhhHHHHHhhcccCCHHHhhHHHHHHHHHHHHHHHHH
Confidence 22222111 1111111112223355899999999999999999998887553
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.41 E-value=4.8e-07 Score=81.73 Aligned_cols=124 Identities=22% Similarity=0.194 Sum_probs=92.4
Q ss_pred HHhhhhhhhcccchhHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHhhhhhhhhhHHHHHhhcCCCCCccchhchHH
Q 014616 9 GAASGGWINDAYGRKKATLLADVVFTAGAIIMAAAPDPYVLILGRLLVGLGVGIASVTAPVYIAEASPSEVRGGLVSTNV 88 (421)
Q Consensus 9 g~~~~g~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~s~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg~~~~~~~ 88 (421)
|.++.+++.||+|||+.+..+.+++++..++.-.+++...+.+.-+..-+...+.+.+.+.|..|++|...|+...+...
T Consensus 397 GlLIt~~iverlGRKkTMal~l~~f~iflfll~~c~~rn~~tvllf~arafisg~fqvaYvYtPEVyPTavRatgvGtcS 476 (528)
T KOG0253|consen 397 GLLITGVIVERLGRKKTMALSLILFGIFLFLLTTCKTRNAYTVLLFTARAFISGAFQVAYVYTPEVYPTAVRATGVGTCS 476 (528)
T ss_pred chhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHhchheEEEEecCcccchhhhhcchhhhh
Confidence 67889999999999999999999999999998887776555444444445566667777889999999999999999888
Q ss_pred HHHHHHHHHHHHHhhhcccCCccchHHHHhhHHHHHHHHHHhhcCCc
Q 014616 89 LMITSGQFLSYLVNLAFTEVPGTWRWMLGVSAVPAIIQFVLMLFMPE 135 (421)
Q Consensus 89 ~~~~~g~~l~~~~~~~~~~~~~~Wr~~f~~~~~~~l~~~~~~~~~~e 135 (421)
.+.-+|.++.+.++. ..... -..+..+.+...++..+...++|-
T Consensus 477 smaRIggI~~p~iA~-~~e~s--~sl~i~vy~~~~ilagIavcffPi 520 (528)
T KOG0253|consen 477 SMARIGGIFSPVIAM-RAELS--TSLPIFVYGALFILAGIAVCFFPI 520 (528)
T ss_pred hHHhhhhhhhhHHHH-Hhccc--eeehHHHHHHHHHHHHHHheeeee
Confidence 888999999998873 22211 223334444445555555666663
|
|
| >KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.24 E-value=3.1e-06 Score=77.44 Aligned_cols=149 Identities=21% Similarity=0.201 Sum_probs=105.8
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHhhHHHHHHHHHHHHHHhhCCCCCCCcchhHHHHHHHHHHHHH
Q 014616 231 SNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLALYIAF 310 (421)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (421)
..+.+.++.. ....+++.+++.|.+.||+|+|..++.++..+..+.+++.+.-. |....++ =.....
T Consensus 105 ~~~iG~LFas-kA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg~s----------y~~l~vA--R~LQgv 171 (464)
T KOG3764|consen 105 NTQIGLLFAS-KALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFGNS----------YPMLFVA--RSLQGV 171 (464)
T ss_pred ccchhHHHHH-HHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHcch----------hHHHHHH--HHHhhh
Confidence 3445554444 45568888999999999999999999888888887777655310 1111111 001111
Q ss_pred hhcccccccceeccccCccch-hhhhhHHHHHHHHHHHHHHHHHhHHHHHHcCcchhhHHHHHHHHHHHHHHHhhccCCC
Q 014616 311 FAPGMGPVPWTLNSEVYPEQY-RGICGGMSATVNWISNLIVAQTFLTVAELVGTGATFLILAGIAVLAVVFVILFVPETQ 389 (421)
Q Consensus 311 ~~~g~~~~~~~~~~e~~p~~~-r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~et~ 389 (421)
..........++.++.||.+. |+.+.|+.-....+|-.++|..-+.+.+..|...+|.+++.++++...+-++.++.++
T Consensus 172 gsA~~~tsglamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFlVL~~v~Lld~~L~l~vi~p~~ 251 (464)
T KOG3764|consen 172 GSAFADTSGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLVLAIVLLLDGALQLLVIEPTE 251 (464)
T ss_pred hHHHHHhhhHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHHHHHHHHHHHHHHHHheeCccc
Confidence 111122344567889999877 6999999988888998888888889999999999999999999998887777766655
Q ss_pred CCC
Q 014616 390 GLT 392 (421)
Q Consensus 390 ~~~ 392 (421)
..+
T Consensus 252 ~~~ 254 (464)
T KOG3764|consen 252 MDP 254 (464)
T ss_pred cCc
Confidence 444
|
|
| >KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.24 E-value=3.2e-05 Score=75.87 Aligned_cols=160 Identities=18% Similarity=0.222 Sum_probs=108.8
Q ss_pred ehhchHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHhhHHHHHHHHHHHHHHhhCCCCCCCcc
Q 014616 216 VMYYSPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGV 295 (421)
Q Consensus 216 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 295 (421)
...+.+.+.++.+.+..+.++..++.... .....++.+.+.||+|.|.+.+.+..+..++.++-.+.. ..
T Consensus 65 ~Gv~~~~~~~~f~~s~~~~~~i~sl~~~~-~~~~gpl~s~l~~rfg~R~v~i~G~~v~~~g~~lssF~~---------~i 134 (509)
T KOG2504|consen 65 FGLLFEELMDYFGSSSSQIAWIGSLLLGV-YLLAGPLVSALCNRFGCRTVMIAGGLVAALGLLLSSFAT---------SL 134 (509)
T ss_pred ehhhHHHHHHHhCCCccHHHHHHHHHHHH-HHHhccHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHh---------hH
Confidence 33456777888888887777766666544 567788888999999999998887777666666554431 01
Q ss_pred hhHHHHHHHHHHHHHhhcccccccceeccccCccchhhhhhHHHHHHHHHHHHHHHHHhHHHHHHcCcchhhHHHHHHHH
Q 014616 296 YGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELVGTGATFLILAGIAV 375 (421)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 375 (421)
|.....+.... ..+.++.......+...+-++.|+.+.|+..+-.-+|.++-+...-.+.+..||+..+.+++.+.+
T Consensus 135 --~~l~lt~gvi~-G~G~~~~~~paiviv~~YF~kkR~lA~Gia~~GsG~G~~~~~~l~~~l~~~~G~r~~~l~~~~~~l 211 (509)
T KOG2504|consen 135 --WQLYLTFGVIG-GLGLGLIYLPAVVILGTYFEKKRALATGIAVSGTGVGTVVFPPLLKYLLSKYGWRGALLIFGGISL 211 (509)
T ss_pred --HHHHHHHHHHh-hccchhhhcchhhhhhhHhHHHHHHHHhhhhccCCcceeeHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 12222222211 111222222222333455677899999999998888888888888888899999999999999997
Q ss_pred HHHHHHHhhccCC
Q 014616 376 LAVVFVILFVPET 388 (421)
Q Consensus 376 ~~~~~~~~~~~et 388 (421)
-..+....+.|.+
T Consensus 212 ~~~~~~~~~rp~~ 224 (509)
T KOG2504|consen 212 NVLVAGALLRPLS 224 (509)
T ss_pred HHHHHHHHcCCCC
Confidence 7777676766633
|
|
| >KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.22 E-value=9.6e-06 Score=75.70 Aligned_cols=107 Identities=22% Similarity=0.190 Sum_probs=66.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHhhHHHHHHHHHHHHHHhhCCCCCCCcchhHHHHHHHHHHHHHhhccc
Q 014616 236 LLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLALYIAFFAPGM 315 (421)
Q Consensus 236 ~~~~~~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 315 (421)
.........+.++|.++.||+.||+|||+..-...+.++++.++.+... ........ ...+...=.+..+...|-
T Consensus 87 ~~Vn~~A~vGti~GQl~FG~lgD~~GRK~vYG~~liImIi~t~~~~~s~---~~~~~~~~--m~~L~~~R~~LGiGIGGD 161 (538)
T KOG0252|consen 87 ALVNAAALVGTIFGQLFFGWLGDKFGRKKVYGKELIIMIICSALSGLSV---GTTSPLGV--MMTLCFFRFLLGIGIGGD 161 (538)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhHHHHHHHHHHHHhccCC---CCCCCcch--hhHHHHHHHHhhccccCC
Confidence 3333444455899999999999999999998877777777766333211 11111111 122222222333445566
Q ss_pred ccccceeccccCccchhhhhhHHHHHHHHHHH
Q 014616 316 GPVPWTLNSEVYPEQYRGICGGMSATVNWISN 347 (421)
Q Consensus 316 ~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~ 347 (421)
.|++.+..+|....+.||+-.+...+.+..|-
T Consensus 162 YPlSAtI~SE~an~~~RGa~iaavFa~Qg~Gi 193 (538)
T KOG0252|consen 162 YPLSATIMSESANKKTRGAFIAAVFAMQGFGI 193 (538)
T ss_pred CcchHHHhhhhhhhccccceeEEEEEecchhH
Confidence 79999999999999999886655555544443
|
|
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.21 E-value=1.4e-05 Score=77.91 Aligned_cols=101 Identities=16% Similarity=0.135 Sum_probs=80.7
Q ss_pred hhhHHHHhhhhhhhcccchhHHHHHHHHHHHHHHHHHHhcC--ChhHHHHHHHHHHhhhhhhhhhHHHHHhhcCCCCC--
Q 014616 4 VGAIVGAASGGWINDAYGRKKATLLADVVFTAGAIIMAAAP--DPYVLILGRLLVGLGVGIASVTAPVYIAEASPSEV-- 79 (421)
Q Consensus 4 ig~~~g~~~~g~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~--s~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~-- 79 (421)
++.+++.++.+++.||+|+|+++.++.++..++.+...+.+ +++.+++.-++.|+|.+...+...++.+|..|.++
T Consensus 275 ~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~ 354 (448)
T PRK09848 275 VGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFWVSVWSLPVALVALAIASIGQGVTMTVMWALEADTVEYGEYL 354 (448)
T ss_pred HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHh
Confidence 56678889999999999999999999998888887777654 56667777889999999999999999999887542
Q ss_pred -----ccchhchHHHHHHHHHHHHHHHhhh
Q 014616 80 -----RGGLVSTNVLMITSGQFLSYLVNLA 104 (421)
Q Consensus 80 -----rg~~~~~~~~~~~~g~~l~~~~~~~ 104 (421)
+|...+.......+|..++..+...
T Consensus 355 ~g~r~~G~~~~~~~~~~klg~aig~~i~g~ 384 (448)
T PRK09848 355 TGVRIEGLTYSLFSFTRKCGQAIGGSIPAF 384 (448)
T ss_pred hCccchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3666777777777777776555443
|
|
| >KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.20 E-value=3.4e-05 Score=75.04 Aligned_cols=153 Identities=21% Similarity=0.196 Sum_probs=106.3
Q ss_pred HHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHhhHHHHHHHHHHHHHHhhCCCCCCCcchhHHHHHHH
Q 014616 225 QMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGL 304 (421)
Q Consensus 225 ~~~g~~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 304 (421)
++.+...++.+...+..+.+ .+++.+.++++.||++-.+.+....++..+..++..+ .+.....+..
T Consensus 74 edl~~~~~~l~~~~t~F~v~-Yii~~~p~~~L~~r~~ls~~l~~~~~~w~~~~~~~~~------------~~s~~~~ial 140 (495)
T KOG2533|consen 74 EDLKLVGNQLGVLDTVFYVG-YIIGQFPSGLLGDRFPLSKGLSVSGILWGLFGFLTAA------------VHSFPGLIAL 140 (495)
T ss_pred cccchhhhhhhhHHHHHHHH-HHHHHhhHHHHHHhCChHHHHHHHHHHHHHHHHHHHH------------HhhhHHHHHH
Confidence 44556666666666666554 7999999999999999655544333322222212111 0112222333
Q ss_pred HHHHHHhhcccccccceeccccCccchhhhhhHHHHHHHHHHHHHHHHHhHHHHH------HcCcchhhHHHHHHHHHHH
Q 014616 305 ALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAE------LVGTGATFLILAGIAVLAV 378 (421)
Q Consensus 305 ~~~~~~~~~g~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~g~~~~~~~~~~~~~~~~ 378 (421)
-++...+-.+..|....+...-|.++.|+.-.|+.++.+.+|+++++.+...+.+ ..||++.|++-+++.++.+
T Consensus 141 r~llGl~es~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW~~~FiI~G~i~~~~g 220 (495)
T KOG2533|consen 141 RFLLGLFESGGWPGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGWRWLFIIEGVITLVLG 220 (495)
T ss_pred HHHHHHHhcccchHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCceeehhHHHHHHHHHH
Confidence 3333444555667777788999999999999999999999999999888776543 4579999999999999998
Q ss_pred HHHHhhccCCCC
Q 014616 379 VFVILFVPETQG 390 (421)
Q Consensus 379 ~~~~~~~~et~~ 390 (421)
++..+++|+...
T Consensus 221 i~~f~~lp~~P~ 232 (495)
T KOG2533|consen 221 IVVFFFLPDNPS 232 (495)
T ss_pred heEEEEecCChh
Confidence 888888887765
|
|
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=98.18 E-value=1.9e-08 Score=98.10 Aligned_cols=145 Identities=22% Similarity=0.209 Sum_probs=83.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHhhHHHHHHHHHHHHHHhhCCCCCCCcchhHHHHHHHHHHHHHhhccc
Q 014616 236 LLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLALYIAFFAPGM 315 (421)
Q Consensus 236 ~~~~~~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 315 (421)
...+... .+..+|+++.|+++||+|||+.++.+.....++.++..... ...+ .......-+...+...+.
T Consensus 50 ~~~~~~~-~g~~~G~~~~g~~~d~~GRk~~~~~~~~~~~i~~~~~~~~~---~~~~------~~~~~~~R~~~G~~~g~~ 119 (451)
T PF00083_consen 50 LLTSSFF-IGAIVGALIFGFLADRYGRKPALIISALLMIIGSILIAFAP---SYNN------FWMLLIGRFLIGFGIGGA 119 (451)
T ss_pred HHHHHHH-hhhcccccccccccccccccccccccccccccccccccccc---cccc------cccccccccccccccccc
Confidence 3333433 34789999999999999999988776666555554443321 0000 111111111222333344
Q ss_pred ccccceeccccCccchhhhhhHHHHHHHHHHHHHHHHHhHHHHHHcC---cchhhHHHHHHHHHHHHHHHhhccCCCCC
Q 014616 316 GPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELVG---TGATFLILAGIAVLAVVFVILFVPETQGL 391 (421)
Q Consensus 316 ~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g---~~~~~~~~~~~~~~~~~~~~~~~~et~~~ 391 (421)
.+....+..|..|++.|+......+....+|..++........+..+ |...+.+.....++. .+...+.||+.+.
T Consensus 120 ~~~~~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~l~~-~~~~~~~pESP~w 197 (451)
T PF00083_consen 120 YVVSPIYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIVSYYSDNWGWRILLIFGAIPSLLV-LLLRFFLPESPRW 197 (451)
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccce
Confidence 56777889999999999988877777766665554433322222222 554554444444443 3344667998444
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.16 E-value=8e-06 Score=77.32 Aligned_cols=147 Identities=22% Similarity=0.146 Sum_probs=99.4
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CChhHHHHhhHHHHHHHHHHHHHHhhCCCCCCCcchhHHHHHHHHH
Q 014616 228 GFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHF-GRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLAL 306 (421)
Q Consensus 228 g~~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~-grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (421)
|++..+...++...... .=..++++||++||+ |+|+....+.+...++-+++... ...... ...+++.
T Consensus 57 g~~~~~A~~l~~~y~sl-VY~t~i~GG~laDr~LG~~~tI~lGail~~iGh~~L~~~----~~~~~~-----gl~i~L~- 125 (498)
T COG3104 57 GFDETHATGLFSAYGSL-VYLTPIIGGWLADRVLGTRRTIVLGAILMAIGHLVLAIS----SVSGPG-----GLYIGLA- 125 (498)
T ss_pred CcChHhhHHHHHHHHHH-HHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhcc----cccccc-----HHHHHHH-
Confidence 37777766666554443 346788999999995 88988777766666665555431 000010 1111211
Q ss_pred HHHHhhcccccccceeccccCccch--hhhhhHHHHHHHHHHHHHHHHHhHHHHHHcCcchhhHHHHHHHHHHHHHHHhh
Q 014616 307 YIAFFAPGMGPVPWTLNSEVYPEQY--RGICGGMSATVNWISNLIVAQTFLTVAELVGTGATFLILAGIAVLAVVFVILF 384 (421)
Q Consensus 307 ~~~~~~~g~~~~~~~~~~e~~p~~~--r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 384 (421)
++.......=+...+...|++|+++ |..+.++.++..++|+++.+.+.+++.+..||+..|-..+.-..++.+.++..
T Consensus 126 ~I~iG~Gl~K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i~~~~~~~~g~~~gF~~aavGm~~gl~~f~~~ 205 (498)
T COG3104 126 LIIVGTGLFKPNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPIITGLLAINYGWHVGFGLAAVGMIIGLVIFLLG 205 (498)
T ss_pred HHHhccccccccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHc
Confidence 1222223334666778888887754 55567777888889999999999999999999999999988888888777665
Q ss_pred c
Q 014616 385 V 385 (421)
Q Consensus 385 ~ 385 (421)
.
T Consensus 206 ~ 206 (498)
T COG3104 206 R 206 (498)
T ss_pred c
Confidence 4
|
|
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=98.10 E-value=8.5e-05 Score=65.40 Aligned_cols=138 Identities=21% Similarity=0.203 Sum_probs=83.9
Q ss_pred cceehhchHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHhhHHHHHHHHHHHHHHhhCCCCCC
Q 014616 213 INTVMYYSPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASS 292 (421)
Q Consensus 213 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 292 (421)
.+....|.|.+.+..|++..+...+...--.+ ..+ .+..|.+.|+.+.+..+.++.....+++..+...... .....
T Consensus 18 ~Y~Fs~yS~~Lk~~l~~sq~~l~~l~~~~~~G-~~~-G~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~~~-~i~~~ 94 (250)
T PF06813_consen 18 TYTFSAYSPQLKSRLGYSQSQLNTLSTAGDIG-SYF-GILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAVSG-RIPSL 94 (250)
T ss_pred ccchhhhhHHHHHHhCCCHHHHHHHHHHHHHH-hhc-cHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhC-ccCcc
Confidence 44556789999999999877766555444433 334 4778999999999999888888888887766544322 11111
Q ss_pred CcchhHHHHHHHHHHHHHhh-cccccccceeccccCccchhhhhhHHHHHHHHHHHHHHHHHhHHHHH
Q 014616 293 SGVYGWIAVIGLALYIAFFA-PGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAE 359 (421)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~ 359 (421)
..|.. ++..+..... ............+.||. +||++.|+.-...-+++.+-..+.....+
T Consensus 95 ---~~~~~--~~~~~l~~~s~~~~~ta~lvt~~~NFP~-~RG~vvgilk~~~GLSaai~t~i~~~~f~ 156 (250)
T PF06813_consen 95 ---PVWLM--CLFLFLGGNSSCWFNTASLVTCVRNFPR-SRGTVVGILKGFFGLSAAIFTQIYSAFFG 156 (250)
T ss_pred ---chHHH--HHHHHHHcccHHHhhhHHHHHHHHhCcc-ccCceehhhhHHHHhHHHHHHHHHHHHcC
Confidence 11121 1111111111 11112222334578885 79999999988888888776666554443
|
|
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=98.06 E-value=0.00046 Score=69.81 Aligned_cols=122 Identities=18% Similarity=0.297 Sum_probs=89.4
Q ss_pred HHHhhhhhhhc-ccchhHHHHHHHHHHHHHHHHHHhcCC--------hhHHHHHHHHHHhhhhhhhhhHHHHHhhcCCCC
Q 014616 8 VGAASGGWIND-AYGRKKATLLADVVFTAGAIIMAAAPD--------PYVLILGRLLVGLGVGIASVTAPVYIAEASPSE 78 (421)
Q Consensus 8 ~g~~~~g~l~d-r~Grr~~~~~~~~l~~i~~~~~~~~~s--------~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~ 78 (421)
+..+++|+++| ++||++.+.++.++..++..+.++... ....+++-.+..+|.|+.-++..+...|.++++
T Consensus 38 l~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~~~ 117 (654)
T TIGR00926 38 LTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGHPLHDLLDLLGLALIALGTGGIKPCVSAFGGDQFEER 117 (654)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccccchHHHHHHHHHHHHHhhccccccCchhhhHhhcCcc
Confidence 44578899999 599999999999999999988776432 123556778888899999999999999998765
Q ss_pred Cc---cchhchHHHHHHHHHHHHHHHhhhcccC------CccchHHHHhhHHHHHHHHHH
Q 014616 79 VR---GGLVSTNVLMITSGQFLSYLVNLAFTEV------PGTWRWMLGVSAVPAIIQFVL 129 (421)
Q Consensus 79 ~r---g~~~~~~~~~~~~g~~l~~~~~~~~~~~------~~~Wr~~f~~~~~~~l~~~~~ 129 (421)
++ .....++....++|.+++..+...+... ..+|...|.+.++..++.+++
T Consensus 118 ~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF~i~~i~m~ia~lv 177 (654)
T TIGR00926 118 QLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYPLAFGVPAILMILALIV 177 (654)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHHHHHHHHHHHH
Confidence 43 3445555666777777776655544321 125999999888777666554
|
|
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=98.03 E-value=9.7e-05 Score=65.07 Aligned_cols=129 Identities=19% Similarity=0.241 Sum_probs=89.7
Q ss_pred hhhHHHHhhhhhhhcccchhHHHHHHHHHHHHHHHHHHhc-------CChhHHHHHHHHHHhhhhhhhhhHHHHHhhcCC
Q 014616 4 VGAIVGAASGGWINDAYGRKKATLLADVVFTAGAIIMAAA-------PDPYVLILGRLLVGLGVGIASVTAPVYIAEASP 76 (421)
Q Consensus 4 ig~~~g~~~~g~l~dr~Grr~~~~~~~~l~~i~~~~~~~~-------~s~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p 76 (421)
+|.-+| ++.|.+.|++|+|.++.++.+...+|-.+...+ .+++.+.+.-++.|.+......++...-.+.+|
T Consensus 48 ~G~~~G-~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~~~~i~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP 126 (250)
T PF06813_consen 48 IGSYFG-ILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAVSGRIPSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFP 126 (250)
T ss_pred HHhhcc-HHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCccCccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCc
Confidence 566665 788999999999999999999988888776442 356788888888888877777777777778887
Q ss_pred CCCccchhchHHHHHHHHHHH-HHHHhhhcccCCccchHHHHhhHHHHHHHHHHhhcCCcC
Q 014616 77 SEVRGGLVSTNVLMITSGQFL-SYLVNLAFTEVPGTWRWMLGVSAVPAIIQFVLMLFMPES 136 (421)
Q Consensus 77 ~~~rg~~~~~~~~~~~~g~~l-~~~~~~~~~~~~~~Wr~~f~~~~~~~l~~~~~~~~~~es 136 (421)
+ +||.+.+..-.....+..+ ..+-..+..+ +.-+..+.+...+.++.++...++++.
T Consensus 127 ~-~RG~vvgilk~~~GLSaai~t~i~~~~f~~--~~~~fll~la~~~~~v~l~~~~~vr~~ 184 (250)
T PF06813_consen 127 R-SRGTVVGILKGFFGLSAAIFTQIYSAFFGD--DPSSFLLFLAVLPAVVCLVAMFFVRPV 184 (250)
T ss_pred c-ccCceehhhhHHHHhHHHHHHHHHHHHcCC--ChHHHHHHHHHHHHHHHHHHhhheecc
Confidence 4 7999988876666554443 4444444433 224555555556666665555555433
|
|
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=98.02 E-value=1.7e-05 Score=76.93 Aligned_cols=164 Identities=18% Similarity=0.164 Sum_probs=91.4
Q ss_pred hchHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHh----hcCChhHHH-HhhHHHHHHHHHHHHHHhhCCCCCC
Q 014616 218 YYSPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLID----HFGRKKLAL-SSLAGVIISLVLLSWAFISGSSASS 292 (421)
Q Consensus 218 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~g~l~d----r~grr~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~ 292 (421)
+..+++.+..|.++...+...... -...++..++.|+++| |.||||..+ .+.....++..++.. ..+....
T Consensus 23 ~~~~f~~~~~gl~~~~~g~i~~~~-~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf~---~~p~~~~ 98 (428)
T PF13347_consen 23 YLLYFYTDVLGLSPALAGLILLVG-RIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLFS---PPPAGLS 98 (428)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHH-HHhhhhcCCcEEEEEeeecccccccceEeehhhHHHHHHHHHhhc---cccchhh
Confidence 344555566799887766655443 3446777788899999 788887754 333333333333221 1010111
Q ss_pred C-cchhHHHHHHHHHHHHHhhcccccccceeccccCcc-chhhhhhHHHHHHHHHHHHHHHHHhHHHHHHcC-------c
Q 014616 293 S-GVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPE-QYRGICGGMSATVNWISNLIVAQTFLTVAELVG-------T 363 (421)
Q Consensus 293 ~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~p~-~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g-------~ 363 (421)
. ....+.. +...++..+ .........++..|+.++ ++|....+.......+|+.+...+.+.+.+..+ +
T Consensus 99 ~~~~~~~~~-~~~~l~~~~-~t~~~i~~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~ 176 (428)
T PF13347_consen 99 FTAKLVWLF-VFYILFDIA-YTFVQIPYNALIPELTPDPDERTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDTSNGY 176 (428)
T ss_pred hhhHHHHHH-HHHHHHHHh-hhhccCchhhcCccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCccchHH
Confidence 1 1112221 112222111 112223335677899874 689998888888888888766666666555444 3
Q ss_pred chhhHHHHHHHHHHHHHHHhhccC
Q 014616 364 GATFLILAGIAVLAVVFVILFVPE 387 (421)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~e 387 (421)
.....+.+.+.++...+..+..||
T Consensus 177 ~~~~~v~~iv~~v~~~i~~~~~ke 200 (428)
T PF13347_consen 177 RWMALVLAIVGLVFFLITFFFVKE 200 (428)
T ss_pred HHHHHHHHHHHHHHhhhhhheeee
Confidence 445555555555555566666677
|
|
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=98.00 E-value=8.8e-05 Score=72.27 Aligned_cols=102 Identities=15% Similarity=0.144 Sum_probs=74.4
Q ss_pred hhhhHHHHhhhhhhhcccchhHHHHHHHHHHHHHHHHHHh--cCChhHHHHHHHHHHhhhhhhhhhHHHHHhhcCCCCC-
Q 014616 3 LVGAIVGAASGGWINDAYGRKKATLLADVVFTAGAIIMAA--APDPYVLILGRLLVGLGVGIASVTAPVYIAEASPSEV- 79 (421)
Q Consensus 3 ~ig~~~g~~~~g~l~dr~Grr~~~~~~~~l~~i~~~~~~~--~~s~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~- 79 (421)
++..+++.+++++++||+|+|+.+.++.+...+......+ .++.+.+++..++.|++.+...+...++++|..+.++
T Consensus 274 ~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~am~ad~~d~~e~ 353 (444)
T PRK09669 274 MIAGLFGALLSERLLGKFDRVRAFKWTIVAFVILSALIFFIPPSNVWLIFALNILFNFIQNLTTPLQWSMFSDVVDYEEK 353 (444)
T ss_pred HHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Confidence 3556788889999999999999998888766654443333 3466777888899999999999999999999886322
Q ss_pred ------ccchhchHHHHHHHHHHHHHHHhhh
Q 014616 80 ------RGGLVSTNVLMITSGQFLSYLVNLA 104 (421)
Q Consensus 80 ------rg~~~~~~~~~~~~g~~l~~~~~~~ 104 (421)
.|...+.+.....+|..+++.+++.
T Consensus 354 ~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ 384 (444)
T PRK09669 354 RSGRRLDGLVFSTNLFAIKLGLAIGGAVVGW 384 (444)
T ss_pred hcCcCcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2334556655666666666555543
|
|
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=97.98 E-value=6.5e-05 Score=73.82 Aligned_cols=100 Identities=9% Similarity=0.119 Sum_probs=73.0
Q ss_pred hhhHHHHhhhhhhhcccchhHHHHHHHHHHHHHHHHHHh-----cCChhHHHHHHHHHHhhhhhhhhhHHHHHhhcCCCC
Q 014616 4 VGAIVGAASGGWINDAYGRKKATLLADVVFTAGAIIMAA-----APDPYVLILGRLLVGLGVGIASVTAPVYIAEASPSE 78 (421)
Q Consensus 4 ig~~~g~~~~g~l~dr~Grr~~~~~~~~l~~i~~~~~~~-----~~s~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~ 78 (421)
++.+++.++.++++||+|+|+.+.++.++..++.+.... .++.+.+++.-++.|++.+...+...++++|..|.+
T Consensus 277 i~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~~~~~~~~~~~am~ad~id~~ 356 (473)
T PRK10429 277 AANLVTLILFPRLVKSLSRRILWAGASIFPVLSCGVLLLMGLAAPHNALLIVIAGILLNIGTALFWVLQVIMVADTVDYG 356 (473)
T ss_pred HHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 567888899999999999999998888876766655432 345566777778899999999999999999997632
Q ss_pred -----C--ccchhchHHHHHHHHHHHHHHHhh
Q 014616 79 -----V--RGGLVSTNVLMITSGQFLSYLVNL 103 (421)
Q Consensus 79 -----~--rg~~~~~~~~~~~~g~~l~~~~~~ 103 (421)
+ .|...+......-.|..+++.+.+
T Consensus 357 e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g 388 (473)
T PRK10429 357 EYKLGIRCESIAYSVQTMVVKGGSAFAAFFIG 388 (473)
T ss_pred hHhcCccchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 233556666555556555544443
|
|
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=97.95 E-value=8.2e-05 Score=68.66 Aligned_cols=115 Identities=14% Similarity=0.037 Sum_probs=81.7
Q ss_pred chhhhHHHHhhhhhhhcccchhHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHhhhhhhhhhHHHHHhhcCCCCCcc
Q 014616 2 ALVGAIVGAASGGWINDAYGRKKATLLADVVFTAGAIIMAAAPDPYVLILGRLLVGLGVGIASVTAPVYIAEASPSEVRG 81 (421)
Q Consensus 2 ~~ig~~~g~~~~g~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~s~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg 81 (421)
...++++|.++++++.||+|+|+++.++.++..++.++....++...+ ..-++.|++.+..+|...+...+..|++. +
T Consensus 187 ~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~l~~~~~~l~~~~~~~~~~-~~~~l~g~~~s~i~P~~~s~a~~~~~~~~-~ 264 (310)
T TIGR01272 187 TWGGAMVGRFIGSAVMPMISQGRYLAFNAFLAVLLSIGAALTHGYVAM-WFVLALGLFNSIMFPTIFSLALNALGRHT-S 264 (310)
T ss_pred HHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHcCCHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhhhhh-h
Confidence 356889999999999999999999998888888877766666554333 35568999999999999988888877653 3
Q ss_pred chhchHHHHHHHHHHHHHHHhhhcccCCccchHHHHhhH
Q 014616 82 GLVSTNVLMITSGQFLSYLVNLAFTEVPGTWRWMLGVSA 120 (421)
Q Consensus 82 ~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~Wr~~f~~~~ 120 (421)
...+... ....|..+.|.+.+.+.+..+ -+..|++..
T Consensus 265 ~asai~~-~~~~Gg~i~P~l~G~lad~~g-~~~a~~v~~ 301 (310)
T TIGR01272 265 QGSGILC-LAIVGGAIVPLLQGSLADCLG-IQLAFALPV 301 (310)
T ss_pred hhHHHHH-HHHhcchHHHHHHHHHHHhcc-chHHHHHHH
Confidence 3344433 344566666665555544333 677776433
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.0007 Score=62.67 Aligned_cols=165 Identities=16% Similarity=0.134 Sum_probs=98.3
Q ss_pred eehhchHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHhhHHHHHHHHHHHHHHhhCCCCCCCc
Q 014616 215 TVMYYSPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSG 294 (421)
Q Consensus 215 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 294 (421)
......|.+.+..+.+..+.+......+.+ ..+.++..+++.||+|+|+.++.++...+++..+..=+ .. ..
T Consensus 31 l~diLip~l~~~f~ls~~~a~liqfaff~g-Yf~~~lpa~~~~kk~gyk~gi~lgL~l~avg~~lF~pA--a~-----~~ 102 (422)
T COG0738 31 LNDILIPHLKEVFDLTYFEASLIQFAFFGG-YFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGAALFWPA--AS-----SK 102 (422)
T ss_pred cchhhHHHHHHHhCccHHHHHHHHHHHHHH-HHHHhccHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhh--hh-----hh
Confidence 344567888888999988887777776655 78889999999999999999888877776665554211 00 01
Q ss_pred chhHHHHHHHHHHHHHhhcccccccceeccccCccchhhhhhHHHHHHHHHHHHHHHHHhHHHHH---------------
Q 014616 295 VYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAE--------------- 359 (421)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~--------------- 359 (421)
.+. ..+.+++.. ........+....+++.+.|++..+.=..++..++.+|..++|.+...+..
T Consensus 103 ~y~-~FL~~lFil-a~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lils~~~~~~~~~~~~~~ 180 (422)
T COG0738 103 SYG-FFLVALFIL-ASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLILSGVALTMSAAQILAI 180 (422)
T ss_pred hHH-HHHHHHHHH-HhhhHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhhccCHHHHHHH
Confidence 111 111111111 111111112223455666677555555677788888888887776655433
Q ss_pred ----HcCcchhhHHHHHHHHHHHHHHHhh-ccCCC
Q 014616 360 ----LVGTGATFLILAGIAVLAVVFVILF-VPETQ 389 (421)
Q Consensus 360 ----~~g~~~~~~~~~~~~~~~~~~~~~~-~~et~ 389 (421)
...++.++..++..+++..+..... .|+.+
T Consensus 181 ~~~~~~~v~~pYl~~~~~lvll~v~~~~~k~p~~~ 215 (422)
T COG0738 181 KGADASSVQFPYLILAGLLVLLAVLILLSKLPDLQ 215 (422)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHhccCCcCC
Confidence 1124566777777666655444332 24443
|
|
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00021 Score=58.02 Aligned_cols=97 Identities=16% Similarity=0.187 Sum_probs=82.1
Q ss_pred hHHHHhhhhhhhcccchhHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHhhhhhhhhhHHHHHhhcCCCCCccchhc
Q 014616 6 AIVGAASGGWINDAYGRKKATLLADVVFTAGAIIMAAAPDPYVLILGRLLVGLGVGIASVTAPVYIAEASPSEVRGGLVS 85 (421)
Q Consensus 6 ~~~g~~~~g~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~s~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg~~~~ 85 (421)
..+..++.+.+.+++|.|+.++++.+.+.+-.+. -+-++.+.++..-.+.|++.+..+.+...++.+..++++|++..+
T Consensus 50 ~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~-~~~~~~~~l~~~s~l~G~~~a~lW~aqg~ylt~~s~~~~~~~~~~ 128 (156)
T PF05978_consen 50 FAISCLFAPSIVNKLGPKWSMILGSLGYAIYIAS-FFYPNSYTLYPASALLGFGAALLWTAQGTYLTSYSTEETIGRNTG 128 (156)
T ss_pred HHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHH-HHhhhHHHHHHHHHHHhhhhHHhhHhhhHHHHHcCCHHHHhhHHH
Confidence 4567788889999999999999999998866655 356778889999999999999999999999999999999999888
Q ss_pred hHHHHHHHHHHHHHHHhh
Q 014616 86 TNVLMITSGQFLSYLVNL 103 (421)
Q Consensus 86 ~~~~~~~~g~~l~~~~~~ 103 (421)
........+.+.|.+...
T Consensus 129 ifw~i~~~s~i~G~~~~~ 146 (156)
T PF05978_consen 129 IFWAIFQSSLIFGNLFLF 146 (156)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 877777777776665543
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.0001 Score=72.23 Aligned_cols=132 Identities=12% Similarity=0.248 Sum_probs=98.3
Q ss_pred hhhHHHHhhhhhhhcccchhHHHHHHHHHHHHHHHHHHh----------cCChhHHHHHHHHHHhhhhhhhhhHHHHHhh
Q 014616 4 VGAIVGAASGGWINDAYGRKKATLLADVVFTAGAIIMAA----------APDPYVLILGRLLVGLGVGIASVTAPVYIAE 73 (421)
Q Consensus 4 ig~~~g~~~~g~l~dr~Grr~~~~~~~~l~~i~~~~~~~----------~~s~~~l~~~R~l~G~g~g~~~~~~~~~i~e 73 (421)
++.++|....+++.+|++.|+++.++.++.+++...... .++.+.++..-++++++.+........++.+
T Consensus 299 v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~ 378 (468)
T TIGR00788 299 LGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEVFVLGDSIIAEVLAQLKFMPFLVLLAR 378 (468)
T ss_pred HHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeeccccccCCCCeeeeeehhHHHHHHHHHHHccHHHHHHH
Confidence 677889999999999999999999999999988865431 1444455667789999999999999999999
Q ss_pred cCCCCCccchhchHHHHHHHHHHHHHHHhhhcccCCc------cchHHHHhh-HHHHHHHHHHhhcCCc
Q 014616 74 ASPSEVRGGLVSTNVLMITSGQFLSYLVNLAFTEVPG------TWRWMLGVS-AVPAIIQFVLMLFMPE 135 (421)
Q Consensus 74 ~~p~~~rg~~~~~~~~~~~~g~~l~~~~~~~~~~~~~------~Wr~~f~~~-~~~~l~~~~~~~~~~e 135 (421)
..|++.+|...+......+.|..++..++..+.+..+ +.+|...+. .+..++.+.....+|+
T Consensus 379 ~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~~~g~~~~~~~~~~~~i~i~~~~~l~~l~~~~llP~ 447 (468)
T TIGR00788 379 LCPSGCESSVFALLASILHLGSSVSGFLGVLLMETIGITCDNSNNLWLLILGHSLAPLLPLPLLHLLPR 447 (468)
T ss_pred hCCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccchHHHHHHHHHHHHHHHHHHHhCCC
Confidence 9999999998888888888888888877765544222 233433332 2333444444456786
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.0015 Score=63.97 Aligned_cols=160 Identities=13% Similarity=0.137 Sum_probs=83.0
Q ss_pred HHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhh----cCChhHHHH-hhHHHHHHHHHHHHHHhhCCCCCCCcch
Q 014616 222 TIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDH----FGRKKLALS-SLAGVIISLVLLSWAFISGSSASSSGVY 296 (421)
Q Consensus 222 ~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr----~grr~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 296 (421)
++.+..|.+....+....+. -...++.-++.|+++|| .||||..+. +.....++..++ +. .+........
T Consensus 35 fyt~~~Gl~~~~~g~i~~~~-ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~ll---f~-~p~~s~~~~~ 109 (460)
T PRK11462 35 FYTDIFGIPAGFVGTMFLVA-RALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLA---YS-TPDLSMNGKM 109 (460)
T ss_pred HHHHhhCCCHHHHHHHHHHH-HHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHH---Hh-CCCCCcchHH
Confidence 34456788877766655443 34477888999999997 477766543 323333332222 11 1111111111
Q ss_pred hHHHHHHHHHHHHHhhcccccccceeccccCc-cchhhhhhHHHHHHHHHHHHHHHHHhHHHHHHcC-------cchhhH
Q 014616 297 GWIAVIGLALYIAFFAPGMGPVPWTLNSEVYP-EQYRGICGGMSATVNWISNLIVAQTFLTVAELVG-------TGATFL 368 (421)
Q Consensus 297 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~p-~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g-------~~~~~~ 368 (421)
.|.......+..+. . ....--.++.+|+.+ ++.|+...+.-...+.++..+++....++....| |.....
T Consensus 110 ~y~~~~~~~~~~~~-t-~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~g~~~~~~g~~~~~~ 187 (460)
T PRK11462 110 IYAAITYTLLTLLY-T-VVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPLVNLIGGDNKPLGFQGGIA 187 (460)
T ss_pred HHHHHHHHHHHHHH-H-HHhccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHH
Confidence 22222211111111 1 111122356677776 6779998888888888887777666555555443 233334
Q ss_pred HHHHHHHHHHHHHHhhccCC
Q 014616 369 ILAGIAVLAVVFVILFVPET 388 (421)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~et 388 (421)
+++.+.+++..+++...+|.
T Consensus 188 i~~ii~~i~~~i~~~~~kE~ 207 (460)
T PRK11462 188 VLSVVAFMMLAFCFFTTKER 207 (460)
T ss_pred HHHHHHHHHHHHHHhcceec
Confidence 44444444444444444554
|
|
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00042 Score=66.13 Aligned_cols=127 Identities=23% Similarity=0.265 Sum_probs=92.6
Q ss_pred HHhhhhhhhcccchhHHHHHHHHHHHHHHHHHHhc-CChhHHHH----HHHHHHhhhhhhhhhHHHHHhhcCCCCCccch
Q 014616 9 GAASGGWINDAYGRKKATLLADVVFTAGAIIMAAA-PDPYVLIL----GRLLVGLGVGIASVTAPVYIAEASPSEVRGGL 83 (421)
Q Consensus 9 g~~~~g~l~dr~Grr~~~~~~~~l~~i~~~~~~~~-~s~~~l~~----~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg~~ 83 (421)
--+..+++..|+|.|+++.++.+.+.+=..+.+.. ++.+...+ .-.++|+..|....+...++.+..|++.|+..
T Consensus 259 ~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~a~~~~~~~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~~at~ 338 (400)
T PF03825_consen 259 FFFFSGRFLKRFGIKWLLLLALVAYAVRWLLYAYFSDPWPFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPELRATA 338 (400)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccchHHH
Confidence 33577999999999999999999999988888887 55444333 34569999999999999999999999999988
Q ss_pred hchHHH-HHHHHHHHHHHHhhhcccCCc-----cchHHHHhhHHHHHHHHHH-hhcCCc
Q 014616 84 VSTNVL-MITSGQFLSYLVNLAFTEVPG-----TWRWMLGVSAVPAIIQFVL-MLFMPE 135 (421)
Q Consensus 84 ~~~~~~-~~~~g~~l~~~~~~~~~~~~~-----~Wr~~f~~~~~~~l~~~~~-~~~~~e 135 (421)
.+.+.. ....|..+|..+++.+.+..+ .|...+.+.+..+++..+. +.+.+|
T Consensus 339 Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~~~~~~~~~~~v~a~~~~~~~~~f~~~fk~ 397 (400)
T PF03825_consen 339 QGLYSALSFGLGGAIGSLIGGWLYDAFGARGMFDWSAVFLVFAVMALVILVLFVILFKP 397 (400)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 877554 456788888877776644322 2555666665555544433 333444
|
|
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00014 Score=68.64 Aligned_cols=128 Identities=16% Similarity=0.154 Sum_probs=90.6
Q ss_pred HHHHhhhhhhhcccchhHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHhhhhhhhhhHHHHHhhcCCCCCccchhch
Q 014616 7 IVGAASGGWINDAYGRKKATLLADVVFTAGAIIMAAAPDPYVLILGRLLVGLGVGIASVTAPVYIAEASPSEVRGGLVST 86 (421)
Q Consensus 7 ~~g~~~~g~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~s~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg~~~~~ 86 (421)
.+...+..++.+|+|.|+.++++.++.++=-..+++++|++.+.+.+.++|+-.+........|+++.+|+|..+.....
T Consensus 273 ~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~~~~~~~~~i~~~klLH~~e~~l~lva~fkYI~~~fd~rlsAt~y~v 352 (412)
T PF01306_consen 273 ALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGSGFATNPWVISLIKLLHALEFPLLLVAAFKYITAHFDKRLSATLYLV 352 (412)
T ss_dssp HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-GGGHHHHHHH
T ss_pred HHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhHHHHHHHH
Confidence 34556788999999999999999999999999999999999999999999999999999999999999998875433322
Q ss_pred -HHHHHHHHHHHHHHHhhhcccCCccchHHHHhhHHHHHHHHHH-hhcCCc
Q 014616 87 -NVLMITSGQFLSYLVNLAFTEVPGTWRWMLGVSAVPAIIQFVL-MLFMPE 135 (421)
Q Consensus 87 -~~~~~~~g~~l~~~~~~~~~~~~~~Wr~~f~~~~~~~l~~~~~-~~~~~e 135 (421)
.+....+|..+...+++.+-+.. |-|..|++.+...++..++ .+.+++
T Consensus 353 ~~~~~~~~~~~i~s~~~G~lyd~~-G~~~tylimg~iv~~~~li~~f~l~~ 402 (412)
T PF01306_consen 353 GFQFAKQIGIIILSPLAGYLYDRI-GFQHTYLIMGLIVLPFTLISAFTLKK 402 (412)
T ss_dssp HHTTTHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHS--
T ss_pred HHHHHHHHHHHHHhhhHHhhHhhc-CcHHHHHHHHHHHHHHHHHheeeecC
Confidence 23333445544444444443333 3677888877766655444 344443
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.0015 Score=63.26 Aligned_cols=135 Identities=20% Similarity=0.223 Sum_probs=96.6
Q ss_pred HHHHHHHHHHHHhhcCChhHHHHhhHHHHHHHHHHHHHHhhCCCCCCCcchhHHHHHHHHHHHHHhhcccccccceeccc
Q 014616 246 NAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLALYIAFFAPGMGPVPWTLNSE 325 (421)
Q Consensus 246 ~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~e 325 (421)
..+.+.+-|.++||+|||..+........+....+.+.. |.......+ ............++.++
T Consensus 75 ~~i~s~~iG~lSD~~grk~~L~~~~~~~~l~~~~~~~~~-------------~~~~~~~~l--~g~~~~~~s~~~a~vad 139 (463)
T KOG2816|consen 75 TLISSPLIGALSDRYGRKVVLLLPLFGTILPALCLLFQG-------------YWFFLLLGL--SGGFSAIFSVGFAYVAD 139 (463)
T ss_pred HHHHHhhhHHhhhhhhhhhhHHHHHHHHHHhHHHHHHHH-------------HHHhhhccc--ccchhhhhhhhhhheee
Confidence 567778889999999999988776666555555443321 111110011 11111123445677889
Q ss_pred cCccchhhhhhHHHHHHHHHHHHHHHHHhHHHHHHcCcchhhHHHHHHHHHHHHHHHhhccCCCCCCHHH
Q 014616 326 VYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELVGTGATFLILAGIAVLAVVFVILFVPETQGLTFLE 395 (421)
Q Consensus 326 ~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~et~~~~~~~ 395 (421)
...++.|....|+.+..-..+..+++.......+..+....|.+.....++..+...+..||+...+.++
T Consensus 140 is~~~~R~~~~gll~~~~~~~~~~~p~~~~~~~~~~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~~~~~~ 209 (463)
T KOG2816|consen 140 ISSEEERSSSIGLLSGTFGAGLVIGPALGGYLVKFLGIALVFLIAAASGILSLLYMLLFLPESLQEKERS 209 (463)
T ss_pred ccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhccccccCccccc
Confidence 9999999999999998877888888888888888888888899999999999888888999997776554
|
|
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.0035 Score=58.99 Aligned_cols=125 Identities=17% Similarity=0.164 Sum_probs=73.3
Q ss_pred hHHHHhhhhhhhcccchhHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHhhhhhhhhhHHHHHhhcCCCCCccchhc
Q 014616 6 AIVGAASGGWINDAYGRKKATLLADVVFTAGAIIMAAAPDPYVLILGRLLVGLGVGIASVTAPVYIAEASPSEVRGGLVS 85 (421)
Q Consensus 6 ~~~g~~~~g~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~s~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg~~~~ 85 (421)
.++-.+...+..+|..-+.=.....++..++.++.++++|.++=+++-.+.+++.|........+.. .+++.--+.+.+
T Consensus 72 ~l~~Kl~aP~fi~~v~y~~Ri~~~~~l~~~g~l~va~~~~v~~~l~Gv~las~ssg~GE~tfL~lt~-~y~~~~l~~wss 150 (402)
T PF02487_consen 72 SLLVKLIAPFFIHRVPYWIRILICVALSAAGMLLVAFSPSVWVRLLGVVLASLSSGLGEVTFLSLTH-FYGKSSLSAWSS 150 (402)
T ss_pred HHHHHHHhHhhhhhccchHHHHHHHHHHHHHHhheeeccchhHHHHHHHHHhhhhhhhHHHHHHHHH-hcCccccccccC
Confidence 3444556777778765333344566688888889999999998899999999999998887777654 555543333333
Q ss_pred hHHHHHHHHHHHHHHHhhhcccCCccchHHHHhhHHHHH-HHHHHhhcCCc
Q 014616 86 TNVLMITSGQFLSYLVNLAFTEVPGTWRWMLGVSAVPAI-IQFVLMLFMPE 135 (421)
Q Consensus 86 ~~~~~~~~g~~l~~~~~~~~~~~~~~Wr~~f~~~~~~~l-~~~~~~~~~~e 135 (421)
+...+.++|...-..++...-.-|..+.......+ ..+..++.+|.
T Consensus 151 ----GTG~aGl~Ga~~y~~lT~~g~s~~~tll~~~~lp~~~~~~~f~~L~~ 197 (402)
T PF02487_consen 151 ----GTGGAGLVGALYYLGLTTLGLSPRTTLLIMLVLPAIFLLSYFFLLPS 197 (402)
T ss_pred ----CcChhhHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 33333344433333333210013556665554333 33333334443
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >TIGR00769 AAA ADP/ATP carrier protein family | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.1 Score=50.69 Aligned_cols=97 Identities=8% Similarity=-0.083 Sum_probs=67.8
Q ss_pred HhhhhhhhcccchhHHHHHHHHHHHHHHHHHHhc--CC-----------------------------hhHHHHHHHHHHh
Q 014616 10 AASGGWINDAYGRKKATLLADVVFTAGAIIMAAA--PD-----------------------------PYVLILGRLLVGL 58 (421)
Q Consensus 10 ~~~~g~l~dr~Grr~~~~~~~~l~~i~~~~~~~~--~s-----------------------------~~~l~~~R~l~G~ 58 (421)
.++.+++++|++|++++.+....+...-.+.++. ++ .|..-+.-+..-+
T Consensus 61 ~~ly~~l~~~~~~~~lf~~~~~~F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~~~i~~~~~W~~~~FYv~~el 140 (472)
T TIGR00769 61 MLIYTKLSNILSKEALFYTVISPFLGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFMGFIAILRIWSFALFYVMAEL 140 (472)
T ss_pred HHHHHHHHhcCCHHHhHHHHHHHHHHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhHHHHHHHhhhhHHHHHHHHHH
Confidence 7889999999999999988777777766665543 11 1111122223333
Q ss_pred hhhhhhh-hHHHHHhhcCCCCCccchhchHHHHHHHHHHHHHHHhhhcc
Q 014616 59 GVGIASV-TAPVYIAEASPSEVRGGLVSTNVLMITSGQFLSYLVNLAFT 106 (421)
Q Consensus 59 g~g~~~~-~~~~~i~e~~p~~~rg~~~~~~~~~~~~g~~l~~~~~~~~~ 106 (421)
-...... .-.....|.++.+|-.+..+....+.+.|.++++.+...+.
T Consensus 141 w~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~~~ 189 (472)
T TIGR00769 141 WGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIKYFS 189 (472)
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2233333 67788999999999889999999999999998886665543
|
These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers. |
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00098 Score=63.79 Aligned_cols=74 Identities=19% Similarity=0.398 Sum_probs=66.4
Q ss_pred hhhHHHHhhhhhhhcccchhHHHHHHHHHHHHHHHHHHhcC--ChhHHHHHHHHHHhhhhhhhhhHHHHHhhcCCC
Q 014616 4 VGAIVGAASGGWINDAYGRKKATLLADVVFTAGAIIMAAAP--DPYVLILGRLLVGLGVGIASVTAPVYIAEASPS 77 (421)
Q Consensus 4 ig~~~g~~~~g~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~--s~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~ 77 (421)
.+.+++.++..++.+|+|+|+++.++.++..++..+.-+.+ +...+++..++.++|.+...+...++++|..+-
T Consensus 283 ~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~i~~~~~~f~~~~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDy 358 (467)
T COG2211 283 AGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLLYFTPAGSVVLIVVALIIAGVGTGIANPLPWAMVADTVDY 358 (467)
T ss_pred HHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHhhccccccHHHhcchhhH
Confidence 45666789999999999999999999999999999988876 678888999999999999999999999988764
|
|
| >KOG3762 consensus Predicted transporter [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.0002 Score=68.40 Aligned_cols=125 Identities=14% Similarity=0.128 Sum_probs=100.9
Q ss_pred hhHHHHhhhhhhhcccchhHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHhhhhhhhhhHHHHHhhcCCCCCccchh
Q 014616 5 GAIVGAASGGWINDAYGRKKATLLADVVFTAGAIIMAAAPDPYVLILGRLLVGLGVGIASVTAPVYIAEASPSEVRGGLV 84 (421)
Q Consensus 5 g~~~g~~~~g~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~s~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg~~~ 84 (421)
|-++-=++.+++-.|+|+-+++..++....+=-+..++.+|+|+.+-.-++||+..+..+.+..+|+++..||+.|..+-
T Consensus 418 gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L~n~W~vLPieilqgit~aliWaa~~sY~s~vaPp~l~at~Q 497 (618)
T KOG3762|consen 418 GEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYSYLQNPWMVLPIEILQGITHALIWAAIISYASHVAPPGLRATAQ 497 (618)
T ss_pred chHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHHHhcCchheeeHHHHHHHHHHHHHHHHHHHHHhhCCCcchHHHH
Confidence 44555577889999999999999999999999999999999999999999999999999999999999999999998776
Q ss_pred chHHH-HHHHHHHHHHHHhhhcccCCccchHHHHhhHHHHHHHHHHh
Q 014616 85 STNVL-MITSGQFLSYLVNLAFTEVPGTWRWMLGVSAVPAIIQFVLM 130 (421)
Q Consensus 85 ~~~~~-~~~~g~~l~~~~~~~~~~~~~~Wr~~f~~~~~~~l~~~~~~ 130 (421)
+..+. ....|--+|.++++.+....+ =|..|.+.++.+++.++..
T Consensus 498 ~l~~g~f~GlG~g~GslIGG~~v~~fg-~~ttf~~~giAcl~~l~~~ 543 (618)
T KOG3762|consen 498 GLLQGIFHGLGKGLGSLIGGFVVERFG-ARTTFRIFGIACLVTLALF 543 (618)
T ss_pred HHHHHHhcccCcchhhhhhhhhheeeh-hHHHHHHHHHHHHHHHHHH
Confidence 65443 334566666777766655443 5778887777666655443
|
|
| >KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.0033 Score=56.96 Aligned_cols=134 Identities=16% Similarity=0.201 Sum_probs=91.2
Q ss_pred HHHHhhhhhhhcccchhHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHhhhhhhhhhHHHHHhhcCCCCCccchhch
Q 014616 7 IVGAASGGWINDAYGRKKATLLADVVFTAGAIIMAAAPDPYVLILGRLLVGLGVGIASVTAPVYIAEASPSEVRGGLVST 86 (421)
Q Consensus 7 ~~g~~~~g~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~s~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg~~~~~ 86 (421)
+++-++.=.+.|-.--|++++.-.+-......+.-+.++.+.+-+.-++.|...+.. .+..+++-+..+|+++.+..+.
T Consensus 56 Lv~LvpvFlLTD~lrYKPvivlq~ls~v~~w~~lv~g~sV~~mQvlE~FyG~~tAaE-IAYysYIYs~Vd~~~Yqrvt~y 134 (433)
T KOG3810|consen 56 LVGLVPVFLLTDYLRYKPVVVLQALSGVPVWIMLVFGPSVKAMQVLEFFYGPATAAE-IAYYSYIYSKVDPEMYKRVTGY 134 (433)
T ss_pred HHHHHHHHHHhhhhhcceeeeeeccchhHHHHHHHhcCCchheeeehhhcChHHHHH-HhhhheeeeecCHHHHHHHHHH
Confidence 444444455667777788877777777777777788999999999999999977764 4577788888999999999998
Q ss_pred HHHHHHHHHHHHHHHhhhcccCCc-cchHHHHhhHHHHHHHHHHhhcCCcChHHHH
Q 014616 87 NVLMITSGQFLSYLVNLAFTEVPG-TWRWMLGVSAVPAIIQFVLMLFMPESPRWLF 141 (421)
Q Consensus 87 ~~~~~~~g~~l~~~~~~~~~~~~~-~Wr~~f~~~~~~~l~~~~~~~~~~esp~~~~ 141 (421)
.......|...|..++-.+..... +.+..=++......+......++|..++-+.
T Consensus 135 ~RaA~L~g~~~g~vlaQlLvs~~~~sy~~LN~ISL~~~~ia~~~A~fLP~v~rSl~ 190 (433)
T KOG3810|consen 135 CRAAFLVGKFVGSVLAQLLVSLETLSYTTLNYISLAEVTIAVLLALFLPRVKRSLY 190 (433)
T ss_pred hHHHHHHHhHHHhHHHHHHhhhcccchhhhchhhHHHHHHHHHHHhhCCCCchhhh
Confidence 888888888888777765544321 1222223333323334445566766654433
|
|
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.016 Score=53.33 Aligned_cols=155 Identities=22% Similarity=0.198 Sum_probs=78.5
Q ss_pred HHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHhhHHHHHHHHHHHHHHhhCCCCCCCcchhHHHHH
Q 014616 223 IVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVI 302 (421)
Q Consensus 223 ~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 302 (421)
+.+.+|++..+++.++...+.. ..+...+.|.+.||+|||+.-+...+.-.++.+.. .. . .+ .+.+.
T Consensus 60 LY~~yg~~~~qIa~Lf~~Gf~S-s~i~g~~~G~laD~~Grk~~cl~~cily~~scl~k------~~-~----~~-~~L~~ 126 (354)
T PF05631_consen 60 LYESYGFSEHQIAILFVAGFAS-SAIFGTFVGSLADRYGRKKACLLFCILYSLSCLTK------HS-S----NY-PVLLL 126 (354)
T ss_pred HHHHcCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHH------hc-c----cc-HHHHH
Confidence 3467899988888887776655 45555666799999999987554443333222111 00 0 11 11111
Q ss_pred H-----HHHHHHHhhcccccccceeccccCccchhhhhhHHHH-HHHHHHHHHHHHHhHHHHHHcCc--chhhHHHHHHH
Q 014616 303 G-----LALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSA-TVNWISNLIVAQTFLTVAELVGT--GATFLILAGIA 374 (421)
Q Consensus 303 ~-----~~~~~~~~~~g~~~~~~~~~~e~~p~~~r~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~g~--~~~~~~~~~~~ 374 (421)
+ +.....+...-.+.+. -+...-+|++..+...+.+. ..+.+..+..+.+.-.+.+..+. -.+|......+
T Consensus 127 GRvlgGiaTSLLfS~FEsW~V~-Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~vaPF~~a~~~l 205 (354)
T PF05631_consen 127 GRVLGGIATSLLFSAFESWMVH-EHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFGFGPVAPFDAAIVLL 205 (354)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCCCcchHHHHHHHH
Confidence 1 1111111111111100 11223345444433333333 22333344444444445555554 46777777777
Q ss_pred HHHHHHHHhhccCCCCC
Q 014616 375 VLAVVFVILFVPETQGL 391 (421)
Q Consensus 375 ~~~~~~~~~~~~et~~~ 391 (421)
.++.++.....+|..+.
T Consensus 206 ~~~~~~I~~~W~ENyg~ 222 (354)
T PF05631_consen 206 AVAAVLILKTWPENYGD 222 (354)
T ss_pred HHHHHHHHhcccccCCC
Confidence 77777776667887765
|
|
| >PF12832 MFS_1_like: MFS_1 like family | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.0011 Score=46.75 Aligned_cols=57 Identities=18% Similarity=0.365 Sum_probs=44.5
Q ss_pred cCcceehhchHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHH
Q 014616 211 TGINTVMYYSPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALS 268 (421)
Q Consensus 211 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~grr~~~~~ 268 (421)
.+.....-|.|.++++.|++..+.+.+...... ...++++++|+++||.++++..+.
T Consensus 14 ~~~g~~~Pfl~~~~~~~Gl~~~~iGil~~i~~~-~~~~~~pl~g~laDk~~~~~~~l~ 70 (77)
T PF12832_consen 14 AALGCLYPFLPLYLKQLGLSPSQIGILSAIRPL-IRFLAPPLWGFLADKFGKRKVILL 70 (77)
T ss_pred HHHHHHHhhhhHhhhhcCCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHCccHHHHH
Confidence 334444557788888899999998887777554 478999999999999999887543
|
|
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.025 Score=57.42 Aligned_cols=154 Identities=19% Similarity=0.213 Sum_probs=89.9
Q ss_pred HHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCChhHHHHhhHHHHHHHHHHHHHHhhCCCCCCCcchhHHHHHH
Q 014616 225 QMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDH-FGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIG 303 (421)
Q Consensus 225 ~~~g~~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr-~grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 303 (421)
+..|.+............. ..-+.++++|+++|+ +||++....+.+...++..++..... ... .........+.+
T Consensus 16 ~~lg~~~~~A~~i~~~f~~-l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~--~~~-~~~~~~~~~l~g 91 (654)
T TIGR00926 16 NFLGFSESTSTVLFHTFTY-LCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAI--PSS-GHPLHDLLDLLG 91 (654)
T ss_pred HHcCCcHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccC--ccc-ccchHHHHHHHH
Confidence 4467776655554444333 356778889999997 58888777666555555544433111 000 000111112222
Q ss_pred HHHHHHHhhcccccccceeccccCccc---hhhhhhHHHHHHHHHHHHHHHHHhHHHHHHc-------CcchhhHHHHHH
Q 014616 304 LALYIAFFAPGMGPVPWTLNSEVYPEQ---YRGICGGMSATVNWISNLIVAQTFLTVAELV-------GTGATFLILAGI 373 (421)
Q Consensus 304 ~~~~~~~~~~g~~~~~~~~~~e~~p~~---~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-------g~~~~~~~~~~~ 373 (421)
+. .+.....+.-|...+...|.++++ .|.....+.....++|+++++.+.+++.+.. +|+..|.+.++.
T Consensus 92 La-Lia~G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF~i~~i~ 170 (654)
T TIGR00926 92 LA-LIALGTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYPLAFGVPAIL 170 (654)
T ss_pred HH-HHHhhccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHHHHH
Confidence 22 223333344466666777777653 3566777888888899888888888877443 466677777777
Q ss_pred HHHHHHHHHh
Q 014616 374 AVLAVVFVIL 383 (421)
Q Consensus 374 ~~~~~~~~~~ 383 (421)
++++.+++..
T Consensus 171 m~ia~lvf~~ 180 (654)
T TIGR00926 171 MILALIVFMA 180 (654)
T ss_pred HHHHHHHHHH
Confidence 7666665544
|
|
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.008 Score=58.22 Aligned_cols=162 Identities=23% Similarity=0.209 Sum_probs=88.3
Q ss_pred hHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhc-----CChhHHHHhhHHHHHHHHHHHHHHhhCCCCCCCc
Q 014616 220 SPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHF-----GRKKLALSSLAGVIISLVLLSWAFISGSSASSSG 294 (421)
Q Consensus 220 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~-----grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 294 (421)
.|++.++.|.++.+...+...... --...++.|.++|.+ .||..++++.....++...+.. .........
T Consensus 13 ~~~l~~~l~ls~~~~~~~~~~~~l--Pw~~Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~--~~~~~~s~~- 87 (433)
T PF03092_consen 13 YPFLKDDLGLSPAQLQRLSSLASL--PWSIKPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLAL--LPASESSAA- 87 (433)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHhC--chHHhhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHh--cccccchhh-
Confidence 345567789998876665544332 134567788999986 2344444444433332322222 111111111
Q ss_pred chhHHHHHHHHHHHHHhhcccccccceeccccC---ccchhhhhhHHHHHHHHHHHHHHHHHhHHHHHHcCcchhhHHHH
Q 014616 295 VYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVY---PEQYRGICGGMSATVNWISNLIVAQTFLTVAELVGTGATFLILA 371 (421)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~---p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 371 (421)
.....+.+ ..+.....-.+.-+...|.. |.+ |+...........+|++++....+++.+..+.+..|.+.+
T Consensus 88 ----~~~~~l~l-a~~g~a~~DV~aDa~vvE~~~~~p~~-~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~~~~~f~i~~ 161 (433)
T PF03092_consen 88 ----IAVVLLFL-ASFGYAFADVAADALVVELARREPES-RGDLQSFVWGVRSVGSLVGSLLSGPLLDSFGPQGVFLISA 161 (433)
T ss_pred ----hHHHHHHH-HHHHHHHHHHhhhHHHHHHhhcCCch-hHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCeEEehHHH
Confidence 11111111 11100000011122334443 444 6777777777888888888888888888888888888888
Q ss_pred HHHHHHHHHHHhhccCCCCCC
Q 014616 372 GIAVLAVVFVILFVPETQGLT 392 (421)
Q Consensus 372 ~~~~~~~~~~~~~~~et~~~~ 392 (421)
.+..+..+..+++.+|++.++
T Consensus 162 ~~~~l~~~~~~~~~~e~~~~~ 182 (433)
T PF03092_consen 162 ALPLLMLIVALFLLEERKVRP 182 (433)
T ss_pred HHHHHHHHHHHHhhhhccccc
Confidence 887777666767777744444
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.027 Score=53.20 Aligned_cols=124 Identities=13% Similarity=0.027 Sum_probs=70.2
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHhhHHHHHHHHHHHHHHhhCCCCCCCcchhHHHHHHHHHHHHH
Q 014616 231 SNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLALYIAF 310 (421)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (421)
+.+...+++..+....++..+.+-|+.||.|-|.....+.....++..+=... ......+.....+...+-.+..
T Consensus 77 s~~~~~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~llgt~ln~iGa~Ir~is---s~p~v~~~f~~~l~~~Gq~iaa-- 151 (480)
T KOG2563|consen 77 SSSAADWLSMIYMVVSVPFGFAAMWILDKFGLRTALLLGTVLNGIGAWIRLIS---SLPFVPPLFRRPLTHTGQSIAA-- 151 (480)
T ss_pred chHHHHHHHHHHHHHHHHHhhHHHHhhcccchHHHHHHHHHHHHHHHHHhhhc---cCccccccchhhhhHHhHHHHH--
Confidence 34455667777777778888889999999999988777666555554332221 1110111111112222222111
Q ss_pred hhcccc-cccceeccccCccchhhhhhHHHHHHHHHHHHHHHHHhHHHHH
Q 014616 311 FAPGMG-PVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAE 359 (421)
Q Consensus 311 ~~~g~~-~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~ 359 (421)
.+.... .+..=...--||+++|+++..+..+.+.+|..++..+.+.+..
T Consensus 152 ~Aq~Fim~lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg~llppilV~ 201 (480)
T KOG2563|consen 152 AAQPFILGLPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGFLLPPILVP 201 (480)
T ss_pred HhhhHhhccccHHHHhhCCcchhhhhhhHHHhcchHHHHHHhhccceecC
Confidence 110000 0101123455899999999999999988987776665555443
|
|
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.01 Score=55.51 Aligned_cols=136 Identities=17% Similarity=0.086 Sum_probs=78.1
Q ss_pred HHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-----ChhHHHHh-hHHHHHHHHHHHHHH--hhCC-CCCCCc
Q 014616 224 VQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFG-----RKKLALSS-LAGVIISLVLLSWAF--ISGS-SASSSG 294 (421)
Q Consensus 224 ~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~g-----rr~~~~~~-~~~~~~~~~~l~~~~--~~~~-~~~~~~ 294 (421)
..+.+......+.+..++... .+.....|+.+|+.+ ||...+.. ......+........ .... ......
T Consensus 7 IvEL~vpA~lv~~lval~~~~--ap~R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~~~~~~ 84 (403)
T PF03209_consen 7 IVELGVPAWLVALLVALHYLV--APLRVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQQSSGP 84 (403)
T ss_pred HHHhccHHHHHHHHHHHHHHH--HHHHHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHcccccccccc
Confidence 345566656666777776653 567888999999998 77766543 222222222332221 1110 111122
Q ss_pred chhHHHHHHHHHH-HHHhhcccccccceeccccCccchhhhhhHHHHHHHHHHHHHHHHHhHHHHHHc
Q 014616 295 VYGWIAVIGLALY-IAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELV 361 (421)
Q Consensus 295 ~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 361 (421)
...+.......+. +.......++...+..+|..|++.|+++.++..+.-.+|-+++..+++.+.+..
T Consensus 85 ~~~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~ 152 (403)
T PF03209_consen 85 FWLGLALAALAFLLYGLGVHASGTSFLALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGRLLDPF 152 (403)
T ss_pred cHHHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHHcccc
Confidence 2223222222221 111111223444567899999999999999999998888888777777665543
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.0084 Score=53.00 Aligned_cols=112 Identities=13% Similarity=-0.011 Sum_probs=81.6
Q ss_pred HHHHhhhhhhhcccchhHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHhhhhhhhhhHHHHHhhcCCCCCccchhch
Q 014616 7 IVGAASGGWINDAYGRKKATLLADVVFTAGAIIMAAAPDPYVLILGRLLVGLGVGIASVTAPVYIAEASPSEVRGGLVST 86 (421)
Q Consensus 7 ~~g~~~~g~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~s~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg~~~~~ 86 (421)
++-+++.|.++||+||+...+.+..+..+.+=..-+. +.+.=.++-.+.|+............++...|+++.|.+.+.
T Consensus 314 av~spvfg~i~Dk~G~n~~wv~~a~~~tl~~H~~l~F-t~lsPy~~m~~lGLsysllAcslWP~va~~vpE~qLGTaygf 392 (459)
T KOG4686|consen 314 AVLSPVFGAISDKYGFNLWWVASACILTLLGHSGLFF-TFLSPYTSMTFLGLSYSLLACSLWPCVASLVPEEQLGTAYGF 392 (459)
T ss_pred hhhhhhHHHhHhhhcceehhHHHHHHHHHHHhhhHHh-hhccHHHHHHHHhhhHHHHHHHHhhhhhhhCCHHHhcchHHH
Confidence 4567889999999999988877776655554322211 222234566778888777776677788889999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhcccCCcc--chHHHHhh
Q 014616 87 NVLMITSGQFLSYLVNLAFTEVPGT--WRWMLGVS 119 (421)
Q Consensus 87 ~~~~~~~g~~l~~~~~~~~~~~~~~--Wr~~f~~~ 119 (421)
.+...+.|..+.+++.+.+....++ |--.|++.
T Consensus 393 ~qsIqNLgla~i~Iiag~i~d~~g~y~~le~ffl~ 427 (459)
T KOG4686|consen 393 IQSIQNLGLAFIPIIAGFIADGDGSYDNLEAFFLI 427 (459)
T ss_pred HHHHHhhhhhHHhhhhheeecCCCchhhHHHHHHH
Confidence 9999999999998888887665543 43344443
|
|
| >KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.025 Score=54.58 Aligned_cols=156 Identities=14% Similarity=0.115 Sum_probs=80.0
Q ss_pred cCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC-hhHHHHhhHHHHHHHHHH-HHHHhhCCCCCCCcchhHHHHHHH
Q 014616 227 AGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGR-KKLALSSLAGVIISLVLL-SWAFISGSSASSSGVYGWIAVIGL 304 (421)
Q Consensus 227 ~g~~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~gr-r~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~ 304 (421)
.+-+....|...... ..+..++++..|+...|.++ |+.++.+....+++-++. ...... ....+..+.+-
T Consensus 66 ~~A~~~ffG~viaa~-slg~~i~~liF~~Ws~k~~~~k~Pli~s~ii~~~g~llY~~l~~~~-------~~~~y~mL~~R 137 (488)
T KOG2325|consen 66 PTATATFFGLVIAAS-SLGHAIFSLIFGIWSNKTGSVKKPLIVSFLIAIIGNLLYLALAYVP-------NGVKYLMLVAR 137 (488)
T ss_pred CCCCcchhhHHHHHH-HHHHHhcchhhcccccccCCcccCHHHHHHHHHHHHHHHHHHHhcc-------cchHHHHHHHH
Confidence 455555555555553 44578888888898999875 666777776666666555 222211 10112222222
Q ss_pred HHHHHHhhcccccccceeccccCccchhhhhhHHHHHHHHHHHHHHHHHhHHHHHH--cC-----------cchhhHHHH
Q 014616 305 ALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAEL--VG-----------TGATFLILA 371 (421)
Q Consensus 305 ~~~~~~~~~g~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~--~g-----------~~~~~~~~~ 371 (421)
.+ ...+.+.....=.+.+...-.+.|.++.+.......++..++|..-...... .| +..+-++++
T Consensus 138 ~l--~Gvg~~n~a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f~~Lg~~G~~i~~~~~~n~YTap~w~m~ 215 (488)
T KOG2325|consen 138 IL--TGVGVGNFAVLRAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQLAFTPLGEKGFMILPGLIFNMYTAPAWLMA 215 (488)
T ss_pred HH--cCcCcccHHHHHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHHHhhhcCCceEEcCcceEEecchHHHHHH
Confidence 11 1122223333335556644455566665544443344443433322221110 01 234667777
Q ss_pred HHHHHHHHHHHhhccCCCCCC
Q 014616 372 GIAVLAVVFVILFVPETQGLT 392 (421)
Q Consensus 372 ~~~~~~~~~~~~~~~et~~~~ 392 (421)
.+.++..+...++++|-....
T Consensus 216 i~~i~~~v~i~~~f~E~~~~~ 236 (488)
T KOG2325|consen 216 ILWIIYIVIILFFFKEVYRGI 236 (488)
T ss_pred HHHHHHHHHHHhheeecccCc
Confidence 777777777777777765444
|
|
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.012 Score=54.06 Aligned_cols=125 Identities=17% Similarity=0.162 Sum_probs=87.3
Q ss_pred hhhHHHHhhhhhhhc-ccchhHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHhhhhhhhhhHHHHHhhcCCCCCc-c
Q 014616 4 VGAIVGAASGGWIND-AYGRKKATLLADVVFTAGAIIMAAAPDPYVLILGRLLVGLGVGIASVTAPVYIAEASPSEVR-G 81 (421)
Q Consensus 4 ig~~~g~~~~g~l~d-r~Grr~~~~~~~~l~~i~~~~~~~~~s~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~r-g 81 (421)
+..+...+....+++ +..+|+..+...+.+.++-..+.+.+.-..++. -++.|+|.|+.++.....+.+-++..+. +
T Consensus 254 l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~G~~G~~~~P~~~~~lw-~~llG~G~G~~F~laL~li~~rs~~a~~Aa 332 (395)
T COG2807 254 LAQLPTALLIPLLARRSKNQRPLVVLALLLMLVGLVGLLLAPGQLPILW-ALLLGLGQGGAFPLALTLILLRSSDAAIAA 332 (395)
T ss_pred HHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhhhHHHHH-HHHHhCccchHHHHHHHHHHhhcCChHHHH
Confidence 345566777788888 466777777788888888777777776554444 4999999999999999999887765444 4
Q ss_pred chhchHHHHHHHHHHHHHHHhhhcccCCccchHHHHhhHHHHHHHHHH
Q 014616 82 GLVSTNVLMITSGQFLSYLVNLAFTEVPGTWRWMLGVSAVPAIIQFVL 129 (421)
Q Consensus 82 ~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~Wr~~f~~~~~~~l~~~~~ 129 (421)
..+++.+.....=...||.+.+.+-+..++|+......+...++..+.
T Consensus 333 ~LSgmaQg~GYllAa~GP~l~G~lhDa~gsw~~~~~~l~~~~i~m~i~ 380 (395)
T COG2807 333 ALSGMAQGVGYLLAAFGPWLFGFLHDATGSWSAPLVLLALATLLMLIF 380 (395)
T ss_pred HHHHHhhhhhHHHHhhhhhhHhHHHHhcCChHHHHHHHHHHHHHHHHH
Confidence 445554444444444566666666666778998888776655554443
|
|
| >PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS) | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.032 Score=48.87 Aligned_cols=53 Identities=17% Similarity=0.354 Sum_probs=34.8
Q ss_pred CCccchhchHHHHHHHHHHHHHHHhhhccc----CCccchHHHHhhHHHHHHHHHHh
Q 014616 78 EVRGGLVSTNVLMITSGQFLSYLVNLAFTE----VPGTWRWMLGVSAVPAIIQFVLM 130 (421)
Q Consensus 78 ~~rg~~~~~~~~~~~~g~~l~~~~~~~~~~----~~~~Wr~~f~~~~~~~l~~~~~~ 130 (421)
|+|+..+..+..++++|.++....-..-.+ ...+|++++.+.++..++.++..
T Consensus 2 k~K~~~s~~n~~gf~iG~ii~~ipF~~~~~~~~~~~~~W~~I~si~~lL~~IpLIly 58 (267)
T PF07672_consen 2 KKKSILSQFNPWGFNIGTIIVNIPFLISSSVVIALTNNWQWILSIFILLIFIPLILY 58 (267)
T ss_pred CccceeeeeccccchhhHHHHHhhHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677888888888888888876543222101 12359999988877666555543
|
|
| >KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.058 Score=49.86 Aligned_cols=95 Identities=20% Similarity=0.210 Sum_probs=58.6
Q ss_pred hhhhhhhc-----ccchhHHHHH-HHHHHHHHHHHHHh-----------cCChhHHHHHHHHHHhhhhhhhhhHHHHHhh
Q 014616 11 ASGGWIND-----AYGRKKATLL-ADVVFTAGAIIMAA-----------APDPYVLILGRLLVGLGVGIASVTAPVYIAE 73 (421)
Q Consensus 11 ~~~g~l~d-----r~Grr~~~~~-~~~l~~i~~~~~~~-----------~~s~~~l~~~R~l~G~g~g~~~~~~~~~i~e 73 (421)
+++.++.| |+||||..++ +..+.+..+...+. .++...+...-++.=+.++.--.+.....-.
T Consensus 81 llWaPiVDs~y~k~~GrrksWvvp~q~llG~~mllLs~~v~~~~g~ng~~p~v~~lt~~f~LLnflaAtQDIAVDgwALt 160 (510)
T KOG3574|consen 81 LLWAPIVDSVYSKRFGRRKSWVVPCQYLLGLFMLLLSYLVDRGLGGNGGLPNVVALTLLFLLLNFLAATQDIAVDGWALT 160 (510)
T ss_pred HHHHhhhHHHHHHhhccccceeeehHHHHHHHHHHHhhCCCcccccCCCCcchHHHHHHHHHHHHHHhhhhhhhhHHHHH
Confidence 46788889 9999986543 22222222222222 2223333334455555666555566666666
Q ss_pred cCCCCCccchhchHHHHHHHHHHHHHHHhhhc
Q 014616 74 ASPSEVRGGLVSTNVLMITSGQFLSYLVNLAF 105 (421)
Q Consensus 74 ~~p~~~rg~~~~~~~~~~~~g~~l~~~~~~~~ 105 (421)
+..+++-|.+...+..+...|..++..+-..+
T Consensus 161 mLs~e~lgyaST~q~Vg~~~GyfL~~~ifLaL 192 (510)
T KOG3574|consen 161 MLSRENLGYASTCQSVGQTAGYFLGNVVFLAL 192 (510)
T ss_pred hcCHhhcCchhHHHHHHHhhhHHhhcceeeEe
Confidence 77888888888888888899988887654443
|
|
| >TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT) | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.25 Score=47.80 Aligned_cols=33 Identities=9% Similarity=0.058 Sum_probs=23.4
Q ss_pred hhHHHHHHHHHHhhhhhhhhhHHHHHhhcCCCCC
Q 014616 46 PYVLILGRLLVGLGVGIASVTAPVYIAEASPSEV 79 (421)
Q Consensus 46 ~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~ 79 (421)
+...++.-++.|++.+........+.+ .+|++.
T Consensus 106 f~~~~~~v~~~g~~~~~~q~s~~gla~-~fp~~~ 138 (437)
T TIGR00939 106 FVTTMASVVIINSGMALLQGSLFGLAG-VFPSTY 138 (437)
T ss_pred HHHHHHHHHHHHhhhhhhcccchhhcc-cCCHHH
Confidence 456667778889998888877777666 455543
|
|
| >KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.4 Score=42.40 Aligned_cols=66 Identities=26% Similarity=0.344 Sum_probs=47.5
Q ss_pred HHhhhhhhhcccchhHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHhhhhhhhhhHHH-HHhhcC
Q 014616 9 GAASGGWINDAYGRKKATLLADVVFTAGAIIMAAAPDPYVLILGRLLVGLGVGIASVTAPV-YIAEAS 75 (421)
Q Consensus 9 g~~~~g~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~s~~~l~~~R~l~G~g~g~~~~~~~~-~i~e~~ 75 (421)
-..+.|-++|+-|||+.-+.-.+.+.+.+ ++-.+++|.+++++|.+-|+..+..+.+-.. ++.|.-
T Consensus 88 FGtivgSLaDkqGRKracvtycitYiLsC-iTKhSpqYkVLmVGR~LGGiaTsLLFSaFEsWliaEHn 154 (454)
T KOG4332|consen 88 FGTIVGSLADKQGRKRACVTYCITYILSC-ITKHSPQYKVLMVGRVLGGIATSLLFSAFESWLIAEHN 154 (454)
T ss_pred HHHHHHHHHhhhccccceeeehHHHHHHH-HhhcCCceEEEeehhhhhhHHHHHHHHHHHHHHHHHhh
Confidence 33566788899999986544444443333 3456889999999999999999988887766 445533
|
|
| >KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.0069 Score=57.10 Aligned_cols=96 Identities=16% Similarity=0.259 Sum_probs=62.1
Q ss_pred HHHhhhhhhhc----ccchhHHHHHHHHH-HHHHHHHHHhcCChhH------------HHHHHHHHHh-----hhhhhhh
Q 014616 8 VGAASGGWIND----AYGRKKATLLADVV-FTAGAIIMAAAPDPYV------------LILGRLLVGL-----GVGIASV 65 (421)
Q Consensus 8 ~g~~~~g~l~d----r~Grr~~~~~~~~l-~~i~~~~~~~~~s~~~------------l~~~R~l~G~-----g~g~~~~ 65 (421)
+-+++-|..+| ||||||.++....+ .+++-.+..++.+... .-+.-++.|+ +.-....
T Consensus 82 ~vQP~vG~~SDrc~sr~GRRRPfI~~~s~~i~~~l~Lig~aaDig~~lgd~~~~~~~~rai~~~~lg~~LLD~A~n~~qg 161 (498)
T KOG0637|consen 82 LVQPLVGSASDRCTSRYGRRRPFILAGSLLIAVSLFLIGYAADIGLLLGDNERKPVKPRAIVLFILGFWLLDVANNTLQG 161 (498)
T ss_pred eecccccccccccccccccccchHHHhhHHHHHHHhhhhhHhhhhHHhcCCcccccchHHHHHHHHHhHHHHhhhhhhhh
Confidence 34677899999 59999877655444 4444445555544322 2233344444 2224556
Q ss_pred hHHHHHhhcCCCCCccc-hhchHHHHHHHHHHHHHHHhh
Q 014616 66 TAPVYIAEASPSEVRGG-LVSTNVLMITSGQFLSYLVNL 103 (421)
Q Consensus 66 ~~~~~i~e~~p~~~rg~-~~~~~~~~~~~g~~l~~~~~~ 103 (421)
.+-+++.|...++++-+ +.+....+...|..+|..++.
T Consensus 162 p~ra~L~Dl~~~d~~~~~Ans~f~~f~avGnvLGY~~g~ 200 (498)
T KOG0637|consen 162 PCRALLADLARGDAKKTRANSVFSFFMAVGNVLGYALGS 200 (498)
T ss_pred hHHHHHHHhccChhhhhccchhHHHHHHhcceeeeeccc
Confidence 77889999887665554 788888888888888877764
|
|
| >PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ] | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.68 Score=44.75 Aligned_cols=37 Identities=27% Similarity=0.295 Sum_probs=28.5
Q ss_pred HHhhcCCCCCccchhchHHHHHHHHHHHHHHHhhhcc
Q 014616 70 YIAEASPSEVRGGLVSTNVLMITSGQFLSYLVNLAFT 106 (421)
Q Consensus 70 ~i~e~~p~~~rg~~~~~~~~~~~~g~~l~~~~~~~~~ 106 (421)
..-...++++++.++..+..+.+.|..++..+-..+.
T Consensus 142 WALT~Ls~~n~~~ASTcqtvG~~~Gyfls~tvFlaln 178 (544)
T PF13000_consen 142 WALTMLSPENVGYASTCQTVGQTAGYFLSFTVFLALN 178 (544)
T ss_pred hhhhhcChhhcchHHHHHHhHhhhhHHHHHHHHHhhC
Confidence 3344567888999988899999999999887665553
|
This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane |
| >PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.039 Score=52.36 Aligned_cols=107 Identities=18% Similarity=0.316 Sum_probs=79.4
Q ss_pred HHHHHHHHHHHHHHHHHHh--cC-Ch------hHHHHHHHHHHhhhhhhhhhHHHHHhhcCCCCC---ccchhchHHHHH
Q 014616 24 KATLLADVVFTAGAIIMAA--AP-DP------YVLILGRLLVGLGVGIASVTAPVYIAEASPSEV---RGGLVSTNVLMI 91 (421)
Q Consensus 24 ~~~~~~~~l~~i~~~~~~~--~~-s~------~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~---rg~~~~~~~~~~ 91 (421)
|++.++.+++.+|..+..+ .+ +. ..+.++-.+.++|.|+.=+....+.+|.+++++ |......+-...
T Consensus 2 ktI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~i 81 (372)
T PF00854_consen 2 KTILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGI 81 (372)
T ss_dssp HHHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHH
Confidence 5677888888999888332 22 22 578889999999999999999999999998874 334555667788
Q ss_pred HHHHHHHHHHhhhcccCCccchHHHHhhHHHHHHHHHHhh
Q 014616 92 TSGQFLSYLVNLAFTEVPGTWRWMLGVSAVPAIIQFVLML 131 (421)
Q Consensus 92 ~~g~~l~~~~~~~~~~~~~~Wr~~f~~~~~~~l~~~~~~~ 131 (421)
++|.+++......+.... +|.+.|.+.++..++.++...
T Consensus 82 n~G~~~~~~~~~~i~~~~-~~~~~f~i~~~~~~~~~~~f~ 120 (372)
T PF00854_consen 82 NIGSLFSPTLVPYIQQNY-GWFLGFGIPAIGMLLALIVFL 120 (372)
T ss_dssp HHHHHHHHHCCCHHHHCS--HHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHhhcccchhhcccc-chhhhhhHHHHHHHHHHHHHH
Confidence 888888877766665444 599999998877666655543
|
The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C. |
| >KOG3762 consensus Predicted transporter [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.032 Score=53.92 Aligned_cols=147 Identities=15% Similarity=0.123 Sum_probs=86.9
Q ss_pred HHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHhhHHHHHHHHHHHHHHhhCCCCCCCcchhHHHHHH
Q 014616 224 VQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIG 303 (421)
Q Consensus 224 ~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 303 (421)
+++.+......+.. .....++.++.-++.+++.+|+|+-+++..++.+...=++.++.. .+.+.+...-.+-+
T Consensus 398 led~~~~~~LfGv~-~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L------~n~W~vLPieilqg 470 (618)
T KOG3762|consen 398 LEDLGGIKTLFGVV-SALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYSYL------QNPWMVLPIEILQG 470 (618)
T ss_pred HhhcCCcceeeeeh-hhhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHHHh------cCchheeeHHHHHH
Confidence 45665444433432 233334477778888999999999988777666555444444332 22222111112222
Q ss_pred HHHHHHHhhcccccccceeccccCccchhhhhhHHHHHHH-HHHHHHHHHHhHHHHHHcCcchhhHHHHHHHHHHHHHHH
Q 014616 304 LALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVN-WISNLIVAQTFLTVAELVGTGATFLILAGIAVLAVVFVI 382 (421)
Q Consensus 304 ~~~~~~~~~~g~~~~~~~~~~e~~p~~~r~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 382 (421)
..... .+...-++++...|++.|+++.++..... -+|--+++.+-+....+++....|.+++..+++.+++..
T Consensus 471 it~al------iWaa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~fg~~ttf~~~giAcl~~l~~~~ 544 (618)
T KOG3762|consen 471 ITHAL------IWAAIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERFGARTTFRIFGIACLVTLALFI 544 (618)
T ss_pred HHHHH------HHHHHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhheeehhHHHHHHHHHHHHHHHHHHH
Confidence 21111 12223357788889999999988876653 344445555556666777777888888888887766554
Q ss_pred h
Q 014616 383 L 383 (421)
Q Consensus 383 ~ 383 (421)
.
T Consensus 545 ~ 545 (618)
T KOG3762|consen 545 S 545 (618)
T ss_pred H
Confidence 4
|
|
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=95.98 E-value=0.0013 Score=65.19 Aligned_cols=165 Identities=19% Similarity=0.132 Sum_probs=0.6
Q ss_pred chHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHhhHHHHHHHHHHHHHHh-hCC---C-CC--
Q 014616 219 YSPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFI-SGS---S-AS-- 291 (421)
Q Consensus 219 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~l~~~~~-~~~---~-~~-- 291 (421)
..+++.+.+++++.+.+.+.+.. -++..+..++..+..+|..|=|.+-.+...+.++.++..+..+ .+. . ..
T Consensus 25 ~lttiErRF~l~S~~~G~i~s~~-di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~l~~lPhf~~~~y~~~~~~~~ 103 (539)
T PF03137_consen 25 SLTTIERRFGLSSSQSGLISSSY-DIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSLLFALPHFLSGPYSYEEASNS 103 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHhcCCCHHHHHHHHHHH-HHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHHHHHhccHhhcCCCcccccccc
Confidence 34566677899888877665543 3445666666778887765544444444455555544433211 000 0 00
Q ss_pred ------------------------------CCcc--hhHHHHHHHHHHHHHhhcccccccceeccccCccchhhhhhHHH
Q 014616 292 ------------------------------SSGV--YGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMS 339 (421)
Q Consensus 292 ------------------------------~~~~--~~~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~p~~~r~~~~g~~ 339 (421)
.... +.++.+.+ .+.....+....++..++.-|..+++..+...|+.
T Consensus 104 ~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~g-q~l~GiG~~pl~tLG~tYiDDnv~~~~splYiGi~ 182 (539)
T PF03137_consen 104 NGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILG-QLLIGIGATPLYTLGITYIDDNVSKKNSPLYIGIL 182 (539)
T ss_dssp -------------------------------------------------SSS----------------------------
T ss_pred ccccccccccccccccccccCccccccccccccchHHHHHHHHH-HHHHhccccCCccceeeeeccccccccCccchhhh
Confidence 0000 11111111 11111222223466678989999999999999999
Q ss_pred HHHHHHHHHHHHHHhHHHH----H-----------------HcC-cchhhHHHHHHHHHHHHHHHhhc
Q 014616 340 ATVNWISNLIVAQTFLTVA----E-----------------LVG-TGATFLILAGIAVLAVVFVILFV 385 (421)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~----~-----------------~~g-~~~~~~~~~~~~~~~~~~~~~~~ 385 (421)
.+...+|..++-..-+... | +.| |+..|.+.+.+.++..+...++.
T Consensus 183 ~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~~l~aipl~~FP 250 (539)
T PF03137_consen 183 YAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILLFLSAIPLFFFP 250 (539)
T ss_dssp --------------------------------------------------------------------
T ss_pred hHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 8888887765433322211 1 123 45566777777666655554443
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=95.95 E-value=0.22 Score=40.50 Aligned_cols=103 Identities=13% Similarity=0.065 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCChhHHHHhhHHHHHHHHHHHHHHhhCCCCCCCcchhHHHHHHHHHHHHHhhccccccc
Q 014616 240 LAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLALYIAFFAPGMGPVP 319 (421)
Q Consensus 240 ~~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 319 (421)
....+...+.+++++.+.+++|.|+.++++..+..+-.... .... .+....+- ....+...-.+...
T Consensus 44 ai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~----~~~~--------~~~l~~~s-~l~G~~~a~lW~aq 110 (156)
T PF05978_consen 44 AILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIASF----FYPN--------SYTLYPAS-ALLGFGAALLWTAQ 110 (156)
T ss_pred HHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHH----Hhhh--------HHHHHHHH-HHHhhhhHHhhHhh
Confidence 33344467788889999999999998776654433222221 1100 01111111 11111111112222
Q ss_pred ceeccccCccchhhhhhHHHHHHHHHHHHHHHHHhH
Q 014616 320 WTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFL 355 (421)
Q Consensus 320 ~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~ 355 (421)
-.+.++..+++.|++-.++...+...+.+++.....
T Consensus 111 g~ylt~~s~~~~~~~~~~ifw~i~~~s~i~G~~~~~ 146 (156)
T PF05978_consen 111 GTYLTSYSTEETIGRNTGIFWAIFQSSLIFGNLFLF 146 (156)
T ss_pred hHHHHHcCCHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 245567777788888888877777777666554443
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >TIGR00769 AAA ADP/ATP carrier protein family | Back alignment and domain information |
|---|
Probab=95.60 E-value=0.57 Score=45.68 Aligned_cols=112 Identities=10% Similarity=0.111 Sum_probs=64.9
Q ss_pred HHHHHHHHHHHhhcCChhHHHHhhHHHHHHHHHHHHHHhhCCCC-CC-----------C-cchhHHH----HHHHHHHH-
Q 014616 247 AVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSA-SS-----------S-GVYGWIA----VIGLALYI- 308 (421)
Q Consensus 247 ~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~-----------~-~~~~~~~----~~~~~~~~- 308 (421)
++..++-+++++|++|++..............+....+....+. ++ + .....+. +....+|.
T Consensus 58 ~~~~~ly~~l~~~~~~~~lf~~~~~~F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~~~i~~~~~W~~~~FYv~ 137 (472)
T TIGR00769 58 VIFMLIYTKLSNILSKEALFYTVISPFLGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFMGFIAILRIWSFALFYVM 137 (472)
T ss_pred HHHHHHHHHHHhcCCHHHhHHHHHHHHHHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhHHHHHHHhhhhHHHHHHH
Confidence 34467778999999999987655544444444443332111110 00 0 0000110 01111111
Q ss_pred --HHhhcccccccceeccccCccchhhhhhHHHHHHHHHHHHHHHHHhHHHH
Q 014616 309 --AFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVA 358 (421)
Q Consensus 309 --~~~~~g~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~ 358 (421)
.+......-+.|..++|.+..++-.+-.++....+++|..+++.......
T Consensus 138 ~elw~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~~~ 189 (472)
T TIGR00769 138 AELWGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIKYFS 189 (472)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11111122366889999999999889999999999999999888776655
|
These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers. |
| >KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.51 E-value=0.4 Score=48.00 Aligned_cols=121 Identities=17% Similarity=0.233 Sum_probs=81.2
Q ss_pred HHHhhhhhhhcc-cchhHHHHHHHHHHHHHHHHHHhc---C-----------------C-----hhHHHHHHHHHHhhhh
Q 014616 8 VGAASGGWINDA-YGRKKATLLADVVFTAGAIIMAAA---P-----------------D-----PYVLILGRLLVGLGVG 61 (421)
Q Consensus 8 ~g~~~~g~l~dr-~Grr~~~~~~~~l~~i~~~~~~~~---~-----------------s-----~~~l~~~R~l~G~g~g 61 (421)
+..+.+++++|. +||=+++.++.++..++..+..++ + . ...+....-+..+|.|
T Consensus 88 ~~~l~g~~laD~f~gry~tI~~~s~i~~~G~~~lt~~a~~~~l~p~~~~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~g 167 (571)
T KOG1237|consen 88 LLPLLGAFLADSFLGRYFTINIGSLISLLGLFGLTLSAMIPALLPFMCKFKPGGNVCESPSKLQLAVLYGALYLIALGAG 167 (571)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccCCCCCCcccCcchHHHHHHHHHHHHheeccC
Confidence 445788999995 688899988888887775433211 1 0 1355666677778999
Q ss_pred hhhhhHHHHHhhcCC---CCCc-c--chhchHHHHHHHHHHHHHHHhhhcccCCccchHHHHhhHHHHHHHHHH
Q 014616 62 IASVTAPVYIAEASP---SEVR-G--GLVSTNVLMITSGQFLSYLVNLAFTEVPGTWRWMLGVSAVPAIIQFVL 129 (421)
Q Consensus 62 ~~~~~~~~~i~e~~p---~~~r-g--~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~Wr~~f~~~~~~~l~~~~~ 129 (421)
+.-+.....-+|-++ ++++ . ....++....+.|.+++..+-..... ..+|.+-|.+.....++.+++
T Consensus 168 g~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a~t~~vyiq~-~~~w~lgf~i~~~~~~lai~i 240 (571)
T KOG1237|consen 168 GIRPCLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNGGALLAQTVLVYIQD-NVGWKLGFGIPTVLNALAILI 240 (571)
T ss_pred CCCCcchhhcccccCccCcchhhCcccchhHHHHHHHHHHHHHHHHHHhhhh-cccceeeccHHHHHHHHHHHH
Confidence 999999999999988 3222 2 34455566667777777665544433 345999998877655554443
|
|
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=95.30 E-value=0.66 Score=44.07 Aligned_cols=128 Identities=13% Similarity=0.055 Sum_probs=64.4
Q ss_pred chHHHHHH-cCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHhhHHHHHHHHHHHHHHhhCCCCCCCcchh
Q 014616 219 YSPTIVQM-AGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYG 297 (421)
Q Consensus 219 ~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 297 (421)
..|++.+. .|++..+...-......=......+....+.|.++.|..++....+.++...++.+. .. ..
T Consensus 26 l~~yL~~~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l~Ykpviil~~~~~i~t~~lll~~----~s-----v~- 95 (412)
T PF01770_consen 26 LTPYLTGPDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYLRYKPVIILQALSYIITWLLLLFG----TS-----VL- 95 (412)
T ss_pred chHHHcCCccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH----Cc-----HH-
Confidence 34554443 566655543322222222244455667789999999999888777777666666553 10 01
Q ss_pred HHHHHHHHHHHHHhhcccccccceeccccCccchhhhhhHHHHHHHHHHHHHHHHHhHHHHH
Q 014616 298 WIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAE 359 (421)
Q Consensus 298 ~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~ 359 (421)
.....-.++....+.- ..-+++.=...|+++--++++.+.+...+|.+++..+--.+..
T Consensus 96 -~mq~~q~~yg~~~a~e--vay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs 154 (412)
T PF01770_consen 96 -AMQLMQFFYGLATAAE--VAYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVS 154 (412)
T ss_pred -HHHHHHHHHHHHHHHH--HHHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111112222111111 1112333233355555566777777776666655544433333
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
| >PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters | Back alignment and domain information |
|---|
Probab=94.94 E-value=0.057 Score=38.64 Aligned_cols=47 Identities=13% Similarity=0.122 Sum_probs=43.2
Q ss_pred hhhhHHHHhhhhhhhcccchhHHHHHHHHHHHHHHHHHHhcCChhHH
Q 014616 3 LVGAIVGAASGGWINDAYGRKKATLLADVVFTAGAIIMAAAPDPYVL 49 (421)
Q Consensus 3 ~ig~~~g~~~~g~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~s~~~l 49 (421)
.+|+++|++...++.++..+++.+..+.+...+.++.+++.++++.+
T Consensus 37 y~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~~~~~~~w 83 (85)
T PF06779_consen 37 YLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMALTHSFWLW 83 (85)
T ss_pred HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhchHHH
Confidence 47999999999999999999999999999999999999999887654
|
Note that many members are hypothetical proteins. |
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=94.69 E-value=2.9 Score=40.36 Aligned_cols=55 Identities=7% Similarity=0.061 Sum_probs=34.6
Q ss_pred cchhhhhhHHHHHHHHHHHHHHHHHhHHHHHHcCcchhhHHHHHHHHHHHHHHHh
Q 014616 329 EQYRGICGGMSATVNWISNLIVAQTFLTVAELVGTGATFLILAGIAVLAVVFVIL 383 (421)
Q Consensus 329 ~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 383 (421)
++..+...+.+.-+-.+...++|...+.+....+......+.++..+++..+=++
T Consensus 144 ~~~La~~NA~mRRIDL~ckllaPl~vG~l~t~~s~~~~~~~i~~~N~~S~~vEy~ 198 (432)
T PF06963_consen 144 PGALARMNATMRRIDLFCKLLAPLFVGLLMTFASPVIAAIFIAGWNLASVFVEYF 198 (432)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444555678888999988888777666666666666666544333
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=94.64 E-value=0.4 Score=48.73 Aligned_cols=171 Identities=16% Similarity=0.091 Sum_probs=93.8
Q ss_pred hHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHhhHHHHHHHHHHHHHH-hhC-----------
Q 014616 220 SPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAF-ISG----------- 287 (421)
Q Consensus 220 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~l~~~~-~~~----------- 287 (421)
.+.+.+..++.+.+.+.+... +-..+.+......+...|..|-++.-.+...+.++.++..+.- ..+
T Consensus 120 IttiErRF~i~Ss~sG~I~s~-~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~lgsll~alPHf~~~~y~~~~~~~~~ 198 (735)
T KOG3626|consen 120 ITTIERRFKISSSQSGLIASS-YDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLMGLGSLLFALPHFFSGPYEYELEVIKQ 198 (735)
T ss_pred hhhhhhhcCCCCCcceeEeee-cccchhhhhHhHHHhccccCccceeeechhHHHHHHHHHhChHHhcCcchhhhhhhhc
Confidence 344445667777665543333 2233555566667877787765555455555555554443210 000
Q ss_pred CCC-C---------------------------CCcchhHHHHHHHHHHHHHhhcccccccceeccccCccchhhhhhHHH
Q 014616 288 SSA-S---------------------------SSGVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMS 339 (421)
Q Consensus 288 ~~~-~---------------------------~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~p~~~r~~~~g~~ 339 (421)
... . ....+.|+.+....++.........++..++.-|...++.-+...|+.
T Consensus 199 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~tlGisYiDDnvk~~~SplYlgi~ 278 (735)
T KOG3626|consen 199 SVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIFTLGISYIDDNVKKKNSPLYLGIL 278 (735)
T ss_pred cccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCccCCCccccccccccCCcHHHHHH
Confidence 000 0 001112222222222223333344567778888888888888999999
Q ss_pred HHHHHHHHHHHHHHhHHHHH------------------HcC-cchhhHHHHHHHHHHHHHHHhhccCCCCCC
Q 014616 340 ATVNWISNLIVAQTFLTVAE------------------LVG-TGATFLILAGIAVLAVVFVILFVPETQGLT 392 (421)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~------------------~~g-~~~~~~~~~~~~~~~~~~~~~~~~et~~~~ 392 (421)
+++..+|.+++-.+-....+ +.| |+..|++.+.++++..+.++ ++|++..++
T Consensus 279 ~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~~~a~p~f-~fPk~lp~~ 349 (735)
T KOG3626|consen 279 YSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALLLFSAVPLF-FFPKELPKS 349 (735)
T ss_pred HHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHH-hCcccCccc
Confidence 99988888776555444432 112 44567777777777766554 456665554
|
|
| >COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=93.86 E-value=2.5 Score=37.73 Aligned_cols=127 Identities=23% Similarity=0.225 Sum_probs=62.4
Q ss_pred hHHHHHHcCCCC--hHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHhhHHHHHHHHHHHHHHhhCCCCCCCcchh
Q 014616 220 SPTIVQMAGFQS--NQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYG 297 (421)
Q Consensus 220 ~~~~~~~~g~~~--~~~~~~~~~~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 297 (421)
.+.+..+.+.+. ...+...... ......+.+..|++.||.|||+....+......+.... .+... . ..
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~--~~~~~-----~--~~ 94 (338)
T COG0477 25 LPLLLSTLSLSSGRLLYGLLLSAF-FLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLL--ALAPN-----V--GL 94 (338)
T ss_pred HHHHHHHcCCCchhHHHHHHHHHH-HHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHH--HhCcc-----c--hH
Confidence 344444444443 2333333333 33356667899999999999866655443322221111 11111 0 01
Q ss_pred HHHHHHHHHHHHHhhcccccccceeccccCcc-chhhhhhHHHHH-HHHHHHHHHHHHhHHH
Q 014616 298 WIAVIGLALYIAFFAPGMGPVPWTLNSEVYPE-QYRGICGGMSAT-VNWISNLIVAQTFLTV 357 (421)
Q Consensus 298 ~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~p~-~~r~~~~g~~~~-~~~~~~~~~~~~~~~~ 357 (421)
+....... ..........+...++..|.+|. +.|+...+.... ...++..+++......
T Consensus 95 ~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (338)
T COG0477 95 ALLLILRL-LQGLGGGGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLL 155 (338)
T ss_pred HHHHHHHH-HHHhhhHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11111111 11111222345566777888887 667777776666 4555555555433333
|
|
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=92.75 E-value=0.35 Score=45.86 Aligned_cols=67 Identities=21% Similarity=0.198 Sum_probs=59.3
Q ss_pred HHHhcCChhHHHHHHHHHHhhhhhhhhhHHHHHhhcCCCCCccchhchHHHHHHHHHHHHHHHhhhc
Q 014616 39 IMAAAPDPYVLILGRLLVGLGVGIASVTAPVYIAEASPSEVRGGLVSTNVLMITSGQFLSYLVNLAF 105 (421)
Q Consensus 39 ~~~~~~s~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg~~~~~~~~~~~~g~~l~~~~~~~~ 105 (421)
..-+.+|.+.+++.-+..|+-.|..+..+...+.|-.|+++|-..++......+.|..++.+++..+
T Consensus 328 ~~~fipsi~ivf~lif~eGLlGGa~YVNtF~~I~~~~~~~~REFslg~vsvsds~GI~lAgll~l~l 394 (402)
T PF02487_consen 328 WYRFIPSIWIVFVLIFYEGLLGGASYVNTFYRISEEVPPEDREFSLGAVSVSDSLGILLAGLLGLPL 394 (402)
T ss_pred HHHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 4456788999999999999999999999999999999999999999999999999998888877543
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=91.65 E-value=11 Score=35.73 Aligned_cols=10 Identities=20% Similarity=0.777 Sum_probs=5.5
Q ss_pred cccCccchhh
Q 014616 324 SEVYPEQYRG 333 (421)
Q Consensus 324 ~e~~p~~~r~ 333 (421)
...+|+++..
T Consensus 142 a~~~P~~ytq 151 (406)
T KOG1479|consen 142 AGLFPSEYTQ 151 (406)
T ss_pred hhcCCHHHHH
Confidence 3455776543
|
|
| >COG3202 ATP/ADP translocase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=91.61 E-value=14 Score=35.95 Aligned_cols=103 Identities=14% Similarity=-0.075 Sum_probs=67.1
Q ss_pred hhHHHHhhhhhhhcccchhHHHHHHHHHHHHHHHHHHhcCC--h----hHHHHHHHHHHhhh------------------
Q 014616 5 GAIVGAASGGWINDAYGRKKATLLADVVFTAGAIIMAAAPD--P----YVLILGRLLVGLGV------------------ 60 (421)
Q Consensus 5 g~~~g~~~~g~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~s--~----~~l~~~R~l~G~g~------------------ 60 (421)
++++-.++.+++.+++.|.+++.+....+...-+++++.-- - .-....|-++...-
T Consensus 74 ~avif~~iy~kl~~~lt~~~vF~~~~~~F~~fF~LFa~Vi~P~~~~~hp~~~~~~~~~~~~p~~l~~~ili~~~Ws~s~~ 153 (509)
T COG3202 74 SAVIFTIIYQKLLNILTREKVFYIILGFFLGFFALFAFVIYPYKDILHPDPEFSRDLFADLPMFLKWFILIVGEWSYSLF 153 (509)
T ss_pred HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCHHHHHHHHhhCCccceeeeEeecchHHHHH
Confidence 45667788999999999999998888888877777775310 0 01122333322221
Q ss_pred --------hhh-hhhHHHHHhhcCCCCCccchhchHHHHHHHHHHHHHHHhhhccc
Q 014616 61 --------GIA-SVTAPVYIAEASPSEVRGGLVSTNVLMITSGQFLSYLVNLAFTE 107 (421)
Q Consensus 61 --------g~~-~~~~~~~i~e~~p~~~rg~~~~~~~~~~~~g~~l~~~~~~~~~~ 107 (421)
... .-.-.....|.+..+|-.+..+......+.+.+++..+...+..
T Consensus 154 Yi~aELWgslV~S~lFw~faNeitt~~eakRFy~lf~l~~ni~lllsg~~~~~~~k 209 (509)
T COG3202 154 YIMAELWGSLVLSLLFWQFANEITTIEEAKRFYPLFGLGANISLLLSGEVTSWLSK 209 (509)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 111 11334456788888888888888888888888887766655544
|
|
| >PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions | Back alignment and domain information |
|---|
Probab=91.60 E-value=15 Score=36.22 Aligned_cols=103 Identities=17% Similarity=0.057 Sum_probs=64.8
Q ss_pred hhHHHHhhhhhhhcccchhHHHHHHHHHHHHHHHHHHhc--C-------Ch-hH---HHHHHHHHHh-------------
Q 014616 5 GAIVGAASGGWINDAYGRKKATLLADVVFTAGAIIMAAA--P-------DP-YV---LILGRLLVGL------------- 58 (421)
Q Consensus 5 g~~~g~~~~g~l~dr~Grr~~~~~~~~l~~i~~~~~~~~--~-------s~-~~---l~~~R~l~G~------------- 58 (421)
+.++-..+..+++||++|.+++.+....+...-.+.++. | +. +. -...+.+.|.
T Consensus 71 ~a~~f~~~y~kl~n~~s~~~lFy~~~~~F~~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~~~i~~~~~Wt~slfY 150 (491)
T PF03219_consen 71 VAILFTILYSKLSNRLSREKLFYIIIIPFLGFFALFAFVLYPNRDILHPDAFADKLLAILPPGFKGFIAMFRNWTFSLFY 150 (491)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhhchhhcCCCHHHHHhhhhccchHHHHHHHHHHHHHHHHH
Confidence 344556678999999999999887777766666655542 1 11 00 0011222221
Q ss_pred -----hhhh-hhhhHHHHHhhcCCCCCccchhchHHHHHHHHHHHHHHHhhhccc
Q 014616 59 -----GVGI-ASVTAPVYIAEASPSEVRGGLVSTNVLMITSGQFLSYLVNLAFTE 107 (421)
Q Consensus 59 -----g~g~-~~~~~~~~i~e~~p~~~rg~~~~~~~~~~~~g~~l~~~~~~~~~~ 107 (421)
-... ....-.....|.++.+|-.+..+....+.++|.+++..+...+..
T Consensus 151 v~aElwgsvvlSlLFW~fAN~itt~~eAKRfYpl~g~ganigli~sG~~~~~~~~ 205 (491)
T PF03219_consen 151 VMAELWGSVVLSLLFWGFANEITTVEEAKRFYPLFGLGANIGLIFSGQLTSYFSS 205 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0111 122456788899999998888888888888888877655554443
|
One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane |
| >PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters | Back alignment and domain information |
|---|
Probab=91.46 E-value=1.8 Score=31.01 Aligned_cols=61 Identities=20% Similarity=0.208 Sum_probs=42.4
Q ss_pred chHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHhhHHHHHHHHHH
Q 014616 219 YSPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLL 280 (421)
Q Consensus 219 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~l 280 (421)
..|...++.+++..+.+.+-+.-+. +..+|.+...++.++..+++.+..+.....+....+
T Consensus 14 lLP~M~~~~~ls~~~ag~lasaNy~-GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~m 74 (85)
T PF06779_consen 14 LLPLMQADGGLSLSQAGWLASANYL-GYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAM 74 (85)
T ss_pred HhHHHHHhcCCCHHHHHHHHHHHHH-HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHH
Confidence 4677788889988877666655544 478888888888888676776665555544444443
|
Note that many members are hypothetical proteins. |
| >KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=91.41 E-value=16 Score=36.78 Aligned_cols=161 Identities=17% Similarity=0.163 Sum_probs=84.7
Q ss_pred HHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CChhHHHHhhHHHHHHHHHHHHHHhhCCC---------C
Q 014616 221 PTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHF-GRKKLALSSLAGVIISLVLLSWAFISGSS---------A 290 (421)
Q Consensus 221 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~-grr~~~~~~~~~~~~~~~~l~~~~~~~~~---------~ 290 (421)
.++....+......+..... +.+.....++++++++|.+ ||.+....+.....++..++......... .
T Consensus 62 ~ylt~~~~~~~~~aa~~v~~-f~G~~~~~~l~g~~laD~f~gry~tI~~~s~i~~~G~~~lt~~a~~~~l~p~~~~~~~~ 140 (571)
T KOG1237|consen 62 TYLTLELHASGGGAANNVNA-FGGTQFLLPLLGAFLADSFLGRYFTINIGSLISLLGLFGLTLSAMIPALLPFMCKFKPG 140 (571)
T ss_pred HHHHHHhccchHHHHHHHHH-HhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccCCCC
Confidence 33445556665444443333 4455678889999999986 66666555544444443333322111100 0
Q ss_pred ----CCCcchhHHHHHHHHHHHHHhhcccccccceeccccCcc----chhh--hhhHHHHHHHHHHHHHHHHHhHHHHHH
Q 014616 291 ----SSSGVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPE----QYRG--ICGGMSATVNWISNLIVAQTFLTVAEL 360 (421)
Q Consensus 291 ----~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~p~----~~r~--~~~g~~~~~~~~~~~~~~~~~~~~~~~ 360 (421)
..+.......+..-....+....|.-|...++-.|.++. +.+. .-........++|..++-.+..+.++.
T Consensus 141 ~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a~t~~vyiq~~ 220 (571)
T KOG1237|consen 141 GNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNGGALLAQTVLVYIQDN 220 (571)
T ss_pred CCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhCcccchhHHHHHHHHHHHHHHHHHHhhhhc
Confidence 001111111111111122223334446666777888872 2223 223333444667777766677777788
Q ss_pred cCcchhhHHHHHHHHHHHHHHH
Q 014616 361 VGTGATFLILAGIAVLAVVFVI 382 (421)
Q Consensus 361 ~g~~~~~~~~~~~~~~~~~~~~ 382 (421)
.+|...|-+..+...++.+++.
T Consensus 221 ~~w~lgf~i~~~~~~lai~iF~ 242 (571)
T KOG1237|consen 221 VGWKLGFGIPTVLNALAILIFL 242 (571)
T ss_pred ccceeeccHHHHHHHHHHHHHH
Confidence 8888888887777766655544
|
|
| >PF12832 MFS_1_like: MFS_1 like family | Back alignment and domain information |
|---|
Probab=90.99 E-value=0.21 Score=35.16 Aligned_cols=29 Identities=21% Similarity=0.484 Sum_probs=23.7
Q ss_pred hhHHHHhhhhhhhcccchhHHHHHHHHHH
Q 014616 5 GAIVGAASGGWINDAYGRKKATLLADVVF 33 (421)
Q Consensus 5 g~~~g~~~~g~l~dr~Grr~~~~~~~~l~ 33 (421)
-.+++++++|.++||++|++.......++
T Consensus 47 ~~~~~~pl~g~laDk~~~~~~~l~~~~~~ 75 (77)
T PF12832_consen 47 IRFLAPPLWGFLADKFGKRKVILLGSLFM 75 (77)
T ss_pred HHHHHHHHHHHHHHHHCccHHHHHHHHHH
Confidence 45788999999999999999877666543
|
|
| >PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions | Back alignment and domain information |
|---|
Probab=90.97 E-value=4 Score=40.10 Aligned_cols=42 Identities=10% Similarity=-0.009 Sum_probs=36.1
Q ss_pred ccceeccccCccchhhhhhHHHHHHHHHHHHHHHHHhHHHHH
Q 014616 318 VPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAE 359 (421)
Q Consensus 318 ~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~ 359 (421)
+.|..++|.++.++-.+-.++....++++.++++.......+
T Consensus 164 LFW~fAN~itt~~eAKRfYpl~g~ganigli~sG~~~~~~~~ 205 (491)
T PF03219_consen 164 LFWGFANEITTVEEAKRFYPLFGLGANIGLIFSGQLTSYFSS 205 (491)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 458899999999988889999999999999988887776665
|
One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane |
| >PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters | Back alignment and domain information |
|---|
Probab=90.82 E-value=1.3 Score=42.02 Aligned_cols=75 Identities=17% Similarity=0.004 Sum_probs=56.0
Q ss_pred HhhcccccccceeccccCccc---hhhhhhHHHHHHHHHHHHHHHHHhHHHHHHcCcchhhHHHHHHHHHHHHHHHhh
Q 014616 310 FFAPGMGPVPWTLNSEVYPEQ---YRGICGGMSATVNWISNLIVAQTFLTVAELVGTGATFLILAGIAVLAVVFVILF 384 (421)
Q Consensus 310 ~~~~g~~~~~~~~~~e~~p~~---~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 384 (421)
....+.=|...++..|.++++ .|.......+...++|+.++....+++.+..+|...|.+.++..+++.+.++..
T Consensus 45 ~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~in~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f~~~ 122 (372)
T PF00854_consen 45 VGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGINIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVFLSG 122 (372)
T ss_dssp HHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHHHCC
T ss_pred hccccccccHHHHHHHHhcccchhhhhhhHHHHHHHHhhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHHHhC
Confidence 334445566667778888765 355566777888999999998888999999999988888888888777666553
|
The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C. |
| >PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ] | Back alignment and domain information |
|---|
Probab=89.39 E-value=4.6 Score=39.32 Aligned_cols=44 Identities=18% Similarity=0.228 Sum_probs=22.4
Q ss_pred chHHHHHH--cCCCChHHHHHHH--HHHHHHHHHHHHHHHHHHh-----hcCChhHHH
Q 014616 219 YSPTIVQM--AGFQSNQLALLLS--LAVAGTNAVGTIVGIYLID-----HFGRKKLAL 267 (421)
Q Consensus 219 ~~~~~~~~--~g~~~~~~~~~~~--~~~~~~~~~g~~~~g~l~d-----r~grr~~~~ 267 (421)
-.|.+++. .+.+-.+++.+.. .|+.. -+++..++| |+||||.-+
T Consensus 22 siPflL~~~~~~~sy~q~~~fSla~~PfSl-----KlLWaPiVDs~y~~~~GRRKSWi 74 (544)
T PF13000_consen 22 SIPFLLQSMAKKVSYSQQAIFSLASYPFSL-----KLLWAPIVDSVYSKRIGRRKSWI 74 (544)
T ss_pred cchhhhccccCCCChhHheeeeeeechhHH-----HHhhhhhhhhhcccccCCcchhh
Confidence 35777776 4444444443221 12211 244555555 789998754
|
This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane |
| >KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=89.05 E-value=0.35 Score=46.03 Aligned_cols=130 Identities=12% Similarity=0.097 Sum_probs=61.2
Q ss_pred hchHHHHHHcCCCChHHHHHH-HHHHHHHHHHHHHHHHHHHhh----cCChhHHHHhhH-HHHHHHHHHHHHH-----hh
Q 014616 218 YYSPTIVQMAGFQSNQLALLL-SLAVAGTNAVGTIVGIYLIDH----FGRKKLALSSLA-GVIISLVLLSWAF-----IS 286 (421)
Q Consensus 218 ~~~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~g~~~~g~l~dr----~grr~~~~~~~~-~~~~~~~~l~~~~-----~~ 286 (421)
.|.|.+++..|....-.+... ..|.. ..+-.++.|..+|| +||||..+.... ...+++.++.++- +.
T Consensus 53 sy~tPyl~~lGvphk~~S~iw~~gPi~--G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~~i~~~l~Lig~aaDig~~lg 130 (498)
T KOG0637|consen 53 SYLTPYLQSLGVPHKWSSIIWLCGPLS--GLLVQPLVGSASDRCTSRYGRRRPFILAGSLLIAVSLFLIGYAADIGLLLG 130 (498)
T ss_pred ccccHHHHHcCCCcccccccccccccc--cceecccccccccccccccccccchHHHhhHHHHHHHhhhhhHhhhhHHhc
Confidence 456667777776654333222 22222 35556777899995 799988765433 3334444443321 11
Q ss_pred CCCCCCCcchhHHHHHHHHHHHHHhhc-ccccccceeccccCccchhhh-hhHHHHHHHHHHHHHH
Q 014616 287 GSSASSSGVYGWIAVIGLALYIAFFAP-GMGPVPWTLNSEVYPEQYRGI-CGGMSATVNWISNLIV 350 (421)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~e~~p~~~r~~-~~g~~~~~~~~~~~~~ 350 (421)
+.... +.-...+.+....+...-++. ....-.-++..++..++.+.+ +.+.......+||.++
T Consensus 131 d~~~~-~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~Ans~f~~f~avGnvLG 195 (498)
T KOG0637|consen 131 DNERK-PVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAKKTRANSVFSFFMAVGNVLG 195 (498)
T ss_pred CCccc-ccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhhccchhHHHHHHhcceee
Confidence 11111 011111222222222221111 111112245566666655555 6666666666666553
|
|
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=88.83 E-value=4.5 Score=40.28 Aligned_cols=119 Identities=16% Similarity=0.048 Sum_probs=56.4
Q ss_pred chhhhHHHHhhhhhhhcccchhHHHHH-HHHHHHHHHH-HH----HhcCCh-hHHHHHHHHHHhhhhhhhhhHHHHHhhc
Q 014616 2 ALVGAIVGAASGGWINDAYGRKKATLL-ADVVFTAGAI-IM----AAAPDP-YVLILGRLLVGLGVGIASVTAPVYIAEA 74 (421)
Q Consensus 2 ~~ig~~~g~~~~g~l~dr~Grr~~~~~-~~~l~~i~~~-~~----~~~~s~-~~l~~~R~l~G~g~g~~~~~~~~~i~e~ 74 (421)
++.|..+|+.+++++.++--|+....- ...+.+..+. +. ++.... ..+...-++.|+-.|+..|....+..+.
T Consensus 59 fl~glalGs~l~~~~~~~~~~~~~~~e~~i~l~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~l~G~~~Pl~~~~~~~~ 138 (521)
T PRK03612 59 MLFAMGVGALLSKYLLRDAAAGFVAVELLLALLGGLSALILYAAFAFQGLSRLLLYVLVLLIGLLIGMEIPLLMRILQRI 138 (521)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 567788888887777643333322111 1111111111 11 111111 2233445677888888888877776654
Q ss_pred CCCCCccchhchHHHHHHHHHHHHHHHhhh-cccCCccchHHHHhhHH
Q 014616 75 SPSEVRGGLVSTNVLMITSGQFLSYLVNLA-FTEVPGTWRWMLGVSAV 121 (421)
Q Consensus 75 ~p~~~rg~~~~~~~~~~~~g~~l~~~~~~~-~~~~~~~Wr~~f~~~~~ 121 (421)
.. ++-|...+.....-..|.++|.++..+ +.+..+.++..+.+..+
T Consensus 139 ~~-~~~g~~~g~ly~~ntlGa~~G~l~~~~vLlp~lG~~~t~~~~a~l 185 (521)
T PRK03612 139 RD-QHLGHNVATVLAADYLGALVGGLAFPFLLLPRLGLIRTAALTGSL 185 (521)
T ss_pred cc-cchhhhhhhhHhHHhHHHHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 32 112333344444445555555544443 33344446665555443
|
|
| >KOG3098 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=88.17 E-value=4.6 Score=39.18 Aligned_cols=84 Identities=20% Similarity=0.351 Sum_probs=62.8
Q ss_pred hhhHHHHhhhhhhhc---ccchhHHHHHHHHHHHHHHHHHHhc------------------CChhHHHHHHHHHHhhhhh
Q 014616 4 VGAIVGAASGGWIND---AYGRKKATLLADVVFTAGAIIMAAA------------------PDPYVLILGRLLVGLGVGI 62 (421)
Q Consensus 4 ig~~~g~~~~g~l~d---r~Grr~~~~~~~~l~~i~~~~~~~~------------------~s~~~l~~~R~l~G~g~g~ 62 (421)
+|.++|....+.+++ |+||++...++.++..++.++.-.. +++..-++.-+++|++-+.
T Consensus 290 ~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~~~~~li~l~~p~dap~~~t~~~~~~~~~~~~~~~ii~~l~G~~D~~ 369 (461)
T KOG3098|consen 290 LGEVIGGLDFSILSKRIRGFGRKPTVLIGIIIHLIGFLLIHLSFPNDAPLRPTDSPPLLFTPSYYLALIIGFLLGFGDAC 369 (461)
T ss_pred HHHHHHHHHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhccccccCCCCCCcccccccccchhHHHHHHHHHhhHHHH
Confidence 455666666777774 6999999999999888888876432 1355667788999999999
Q ss_pred hhhhHHHHHhhcCCCCCccchhchHH
Q 014616 63 ASVTAPVYIAEASPSEVRGGLVSTNV 88 (421)
Q Consensus 63 ~~~~~~~~i~e~~p~~~rg~~~~~~~ 88 (421)
.......++.+.. +++|..+.+..-
T Consensus 370 ~~t~~~~ii~~~~-~~~~~~~fsi~k 394 (461)
T KOG3098|consen 370 FNTQRYVIIALLY-PDDRAQAFSLFK 394 (461)
T ss_pred HHHHHHHHHHHHh-cCchHHHHHHHH
Confidence 9999999999999 455554444433
|
|
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=87.92 E-value=12 Score=37.40 Aligned_cols=46 Identities=15% Similarity=0.182 Sum_probs=29.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhHHH-HHHcCcchhhHHHHHHHHHHH
Q 014616 333 GICGGMSATVNWISNLIVAQTFLTV-AELVGTGATFLILAGIAVLAV 378 (421)
Q Consensus 333 ~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~ 378 (421)
+...|-.+..+.+|+.+++...+.+ ....|.....+..+.+.+++.
T Consensus 144 g~~~g~ly~~ntlGa~~G~l~~~~vLlp~lG~~~t~~~~a~l~~~~a 190 (521)
T PRK03612 144 GHNVATVLAADYLGALVGGLAFPFLLLPRLGLIRTAALTGSLNLLAA 190 (521)
T ss_pred hhhhhhhHhHHhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 3456777888888888888776654 345665555555555544443
|
|
| >PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs | Back alignment and domain information |
|---|
Probab=87.64 E-value=0.13 Score=47.31 Aligned_cols=34 Identities=9% Similarity=0.106 Sum_probs=2.0
Q ss_pred ccccceeccccCccchhhhhhHHHHHHHHHHHHH
Q 014616 316 GPVPWTLNSEVYPEQYRGICGGMSATVNWISNLI 349 (421)
Q Consensus 316 ~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~ 349 (421)
++....+..+..+++.|..+..+++..-.+|-..
T Consensus 266 ~tl~m~~~p~~v~~~e~e~aG~~~~~~L~~Gl~~ 299 (309)
T PF01733_consen 266 STLAMMYAPKSVSPEERELAGSVMSFFLSFGLFI 299 (309)
T ss_dssp -HHHH-----------------------------
T ss_pred hhceeeeCCCcCCHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566677778888877766655555544333
|
Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A. |
| >KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=87.57 E-value=2.6 Score=39.48 Aligned_cols=58 Identities=17% Similarity=0.134 Sum_probs=32.7
Q ss_pred HHHhhcCcceehhchHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHh-----hcCChhHHH
Q 014616 206 AFQQFTGINTVMYYSPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLID-----HFGRKKLAL 267 (421)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~g~l~d-----r~grr~~~~ 267 (421)
+..+...+.... ..|.+++..|.+-..++......+ - .---+++..++| |+||||.-+
T Consensus 40 YllQGiP~GL~~-~iP~lL~ak~vSyt~~a~fS~ay~-P--~sLKllWaPiVDs~y~k~~GrrksWv 102 (510)
T KOG3574|consen 40 YLLQGIPLGLIG-AIPLLLQAKGVSYTSQAIFSFAYW-P--FSLKLLWAPIVDSVYSKRFGRRKSWV 102 (510)
T ss_pred HHHcCCchhHhh-hhHHHhcCCCcchhhhhhhhhhhh-H--HHHHHHHHhhhHHHHHHhhcccccee
Confidence 334444444333 678888866666555544332211 1 122466778888 999988643
|
|
| >KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=87.31 E-value=4.8 Score=35.85 Aligned_cols=43 Identities=19% Similarity=0.228 Sum_probs=28.6
Q ss_pred HHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHH
Q 014616 224 VQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLAL 267 (421)
Q Consensus 224 ~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~grr~~~~ 267 (421)
.+.+++...+++.++....+- ..+...+.|.++||.|||+.-+
T Consensus 64 YstYgFgkG~IgqLfiaGfgS-smLFGtivgSLaDkqGRKracv 106 (454)
T KOG4332|consen 64 YSTYGFGKGDIGQLFIAGFGS-SMLFGTIVGSLADKQGRKRACV 106 (454)
T ss_pred ehhcCccCCccceeeecccch-HHHHHHHHHHHHhhhcccccee
Confidence 456677777777766554443 3444455568999999998643
|
|
| >TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT) | Back alignment and domain information |
|---|
Probab=86.33 E-value=15 Score=35.70 Aligned_cols=10 Identities=30% Similarity=0.820 Sum_probs=5.9
Q ss_pred cccCccchhh
Q 014616 324 SEVYPEQYRG 333 (421)
Q Consensus 324 ~e~~p~~~r~ 333 (421)
...+|++.-+
T Consensus 131 a~~fp~~~~~ 140 (437)
T TIGR00939 131 AGVFPSTYSS 140 (437)
T ss_pred cccCCHHHHH
Confidence 4567776543
|
|
| >KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=82.76 E-value=45 Score=31.80 Aligned_cols=34 Identities=18% Similarity=0.085 Sum_probs=21.6
Q ss_pred hhHHHHHHHHHHhhhhhhhhhHHHHHhhcCCCCCc
Q 014616 46 PYVLILGRLLVGLGVGIASVTAPVYIAEASPSEVR 80 (421)
Q Consensus 46 ~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~r 80 (421)
+...++.-.+.+.+.|..........++ +|+|.-
T Consensus 117 f~vt~~~vv~~~~a~a~~qgs~~G~a~~-~P~~yt 150 (406)
T KOG1479|consen 117 FLVTLIIVVLLNLANAVVQGSLYGLAGL-FPSEYT 150 (406)
T ss_pred HHHHHHHHHHHhhhhhhhccchhhhhhc-CCHHHH
Confidence 4556667777787777766666665555 455543
|
|
| >KOG2601 consensus Iron transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=81.96 E-value=32 Score=32.48 Aligned_cols=22 Identities=18% Similarity=0.018 Sum_probs=14.8
Q ss_pred HHHHHHHHHhhcCChhHHHHhh
Q 014616 249 GTIVGIYLIDHFGRKKLALSSL 270 (421)
Q Consensus 249 g~~~~g~l~dr~grr~~~~~~~ 270 (421)
-..+.|...|++.|+|.....+
T Consensus 79 lg~ivGq~vDg~sr~Kvi~~~L 100 (503)
T KOG2601|consen 79 LGPIVGQWVDGMSRVKVIQTWL 100 (503)
T ss_pred hHHHHHHHhcchhHHHHHHHHH
Confidence 3344457799999988765443
|
|
| >KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only] | Back alignment and domain information |
|---|
Probab=80.51 E-value=6 Score=36.00 Aligned_cols=78 Identities=21% Similarity=0.185 Sum_probs=64.5
Q ss_pred HHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHhhhhhhhhhHHHHHhhcCCCCCccchhchHHHHHHHHHHHHHHHhh
Q 014616 26 TLLADVVFTAGAIIMAAAPDPYVLILGRLLVGLGVGIASVTAPVYIAEASPSEVRGGLVSTNVLMITSGQFLSYLVNL 103 (421)
Q Consensus 26 ~~~~~~l~~i~~~~~~~~~s~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg~~~~~~~~~~~~g~~l~~~~~~ 103 (421)
+.+-.+++.+...+..+.++++..++.-+.-|+-.|..++.+.--+.+-.++++|-.+++.....-..|..++..++.
T Consensus 322 lQ~vNl~ff~~~a~~~ftpsi~ivf~lI~~EGLlGGasYVNTf~~i~~e~~pd~rEfamsavs~sDS~Gi~lA~~lal 399 (409)
T KOG3880|consen 322 LQFVNLLFFLLQAWYWFTPSIWIVFALILFEGLLGGASYVNTFHNIHKETEPDVREFAMSAVSISDSIGIFLAGLLAL 399 (409)
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcCchHHHHHHHHHhhcCCchHHHHhHhhheecchhhHHHHHHHhc
Confidence 344556677777788899999999999999999999999999888888888999988888777777777777766654
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 421 | ||||
| 4gby_A | 491 | The Structure Of The Mfs (Major Facilitator Superfa | 7e-32 |
| >pdb|4GBY|A Chain A, The Structure Of The Mfs (Major Facilitator Superfamily) Proton:xylose Symporter Xyle Bound To D-Xylose Length = 491 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 Length = 451 | Back alignment and structure |
|---|
Score = 66.6 bits (163), Expect = 4e-12
Identities = 59/381 (15%), Positives = 132/381 (34%), Gaps = 34/381 (8%)
Query: 13 GGWINDAYGRKKATLLADVVFTAGAIIMAAAPDP----YVLILGRLLVGLGVGIASVTAP 68
G ++D + ++ A + M P V+ + L G G+
Sbjct: 82 MGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCG 141
Query: 69 VYIAEASPSEVRGGLVSTNVLMITSGQFLSYLVNLAFTEVPGTWRWMLGVSAVPAIIQFV 128
+ + RGG+VS G + L+ L W L +PA +
Sbjct: 142 RTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAAL---YMPAFCAIL 198
Query: 129 LMLFMPESPRWLFMKSDKEKAILVLSKIYDIARLEDEIDHLSAAAEEELRKKKTVRYLDV 188
+ LF + M+ + L I +++ E+ K + V
Sbjct: 199 VALFA-----FAMMRDTPQSCGLP-----PIEEYKNDYPDDYNEKAEQELTAKQIFMQYV 248
Query: 189 FKSKEIRLAFLAGAGLQAFQQFTGINTVMYYSPT-IVQMAGFQSNQLALLLSL-AVAGTN 246
+K + +A F ++ +SPT + ++ F ++ + L AG
Sbjct: 249 LPNKLLWYIAIA----NVFVYLL-RYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGI- 302
Query: 247 AVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLAL 306
GT++ ++ D R + + + + + +++ + + +I + +
Sbjct: 303 -PGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAG------NPTVDMICMIV 355
Query: 307 YIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFL-TVAELVGTGA 365
I F G + E+ P++ G G + ++ + A + + G
Sbjct: 356 -IGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDG 414
Query: 366 TFLILAGIAVLAVVFVILFVP 386
F+++ G ++LAV+ +I+ +
Sbjct: 415 GFMVMIGGSILAVILLIVVMI 435
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 42.9 bits (100), Expect = 2e-04
Identities = 39/266 (14%), Positives = 67/266 (25%), Gaps = 75/266 (28%)
Query: 44 PDPYVLILGRLLVGLGVGIASVTAPVYIAEASPSEVRGGLVSTNVLMITSGQ------FL 97
P VLI G LG G + A + S + + + L
Sbjct: 149 PAKNVLIDG----VLGSG-KTWVA----LDVCLSYKVQCKMDFKIFWLNLKNCNSPETVL 199
Query: 98 SYLVNLAFTEVPGTWRWMLGVSAVPAIIQFVLMLFMPESPRWLFMKSDKEKAILVLSKIY 157
L L + P S + I + R L E +LVL +
Sbjct: 200 EMLQKLLYQIDPNWTSRSDHSSNIKLRIHSI-----QAELRRLLKSKPYENCLLVLLNVQ 254
Query: 158 DIARLEDEIDH------LSAAAEEELRKKKTVRYLDVFKSKEIRL-----AFLAGAGLQA 206
+ A+ + + + R K+ +L + I L
Sbjct: 255 N-AKAWNAFNLSCKILLTT-------RFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSL 306
Query: 207 FQQFTGINT------VMYYSPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHF 260
++ V+ +P LS+ + + D
Sbjct: 307 LLKYLDCRPQDLPREVLTTNP--------------RRLSI-----------IAESIRDGL 341
Query: 261 GR----KKLALSSLAGVI-ISLVLLS 281
K + L +I SL +L
Sbjct: 342 ATWDNWKHVNCDKLTTIIESSLNVLE 367
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} Length = 375 | Back alignment and structure |
|---|
Score = 42.2 bits (100), Expect = 2e-04
Identities = 24/120 (20%), Positives = 38/120 (31%), Gaps = 2/120 (1%)
Query: 18 DAYGRKKATLLADVVFTAGAIIMAAAPDPYVLILGRLLVGLGVGIASVTAPVYIAEASPS 77
D GR+ L+ +F ++ VLI + G+G G+ V A +
Sbjct: 60 DRVGRRPVILVGMSIFMLATLVAVTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYER 119
Query: 78 EVRGGLVSTNVLMITSGQFLSYLVNLAFTEVPGTWRWMLGVSAVPAIIQFVLMLF-MPES 136
S + I L+ L+ + WR V M MPE+
Sbjct: 120 TQLRHANSLLNMGILVSPLLAPLIGGLLDTMWN-WRACYLFLLVLCAGVTFSMARWMPET 178
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* Length = 438 | Back alignment and structure |
|---|
Score = 40.7 bits (95), Expect = 8e-04
Identities = 53/386 (13%), Positives = 115/386 (29%), Gaps = 39/386 (10%)
Query: 8 VGAASGGWINDAYGRKKATLLADVVFTAGAIIM--AAAPDPYVLILGRL-LVGLGVGIAS 64
+ G + K + ++ GA + AA Y L L L ++ G+G
Sbjct: 76 IIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLE 135
Query: 65 VTAPVYIAEASPSEVRGGLVST----NVLMITSGQFL-SYLVNLAFTEVPGTWRWMLGVS 119
A ++ P ++ N L+ +
Sbjct: 136 TAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPE 195
Query: 120 AVPAIIQFVLMLFMPESPRWLFMKSDKEKAILVLSKIYDIARLEDEIDHLSAAAEEELRK 179
+ A +++ +P + + +L+++ + + + + + + ++
Sbjct: 196 QLSAYKHSLVLSVQ--TPYMIIV-----AIVLLVALLIMLTKFP-ALQSDNHSDAKQGSF 247
Query: 180 KKTVRYLDVFKSKEIRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQMAGFQSNQLALLLS 239
++ L + + R A LA Q Y V+ + A
Sbjct: 248 SASLSRL--ARIRHWRWAVLA----QFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYL 301
Query: 240 LAVAGTNAVGTIVGIYLIDHFG-RKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGW 298
+G G +LI F K LA +L + + L+ G
Sbjct: 302 TGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAF-------------AGGH 348
Query: 299 IAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVA 358
+ +I L L + F P ++L + + + + T+ I IV V+
Sbjct: 349 VGLIALTL-CSAFMSIQYPTIFSLGIKNLGQDTKYGSSFIVMTI--IGGGIVTPVMGFVS 405
Query: 359 ELVGTGATFLILAGIAVLAVVFVILF 384
+ G T ++ + + F
Sbjct: 406 DAAGNIPTAELIPALCFAVIFIFARF 431
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 421 | |||
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 100.0 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 99.98 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 99.97 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 99.95 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 99.93 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 99.89 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 99.89 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 99.29 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 99.15 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 99.1 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 99.06 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 99.01 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 98.95 | |
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 98.89 |
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.2e-45 Score=356.66 Aligned_cols=386 Identities=34% Similarity=0.598 Sum_probs=294.5
Q ss_pred chhhhHHHHhhhhhhhcccchhHHHHHHHHHHHHHHHHHHh------------------cCChhHHHHHHHHHHhhhhhh
Q 014616 2 ALVGAIVGAASGGWINDAYGRKKATLLADVVFTAGAIIMAA------------------APDPYVLILGRLLVGLGVGIA 63 (421)
Q Consensus 2 ~~ig~~~g~~~~g~l~dr~Grr~~~~~~~~l~~i~~~~~~~------------------~~s~~~l~~~R~l~G~g~g~~ 63 (421)
.++|.++|++++|+++||+|||+++.++.+++.++++++++ ++|+++++++|+++|+|.|+.
T Consensus 64 ~~~G~~iG~~~~G~laDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~ 143 (491)
T 4gc0_A 64 ALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLA 143 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 46899999999999999999999999999999999999994 789999999999999999999
Q ss_pred hhhHHHHHhhcCCCCCccchhchHHHHHHHHHHHHHHHhhhcccC-------CccchHHHHhhHHHHHHHHHHhhcCCcC
Q 014616 64 SVTAPVYIAEASPSEVRGGLVSTNVLMITSGQFLSYLVNLAFTEV-------PGTWRWMLGVSAVPAIIQFVLMLFMPES 136 (421)
Q Consensus 64 ~~~~~~~i~e~~p~~~rg~~~~~~~~~~~~g~~l~~~~~~~~~~~-------~~~Wr~~f~~~~~~~l~~~~~~~~~~es 136 (421)
.+....+++|+.|+++|++..+........|.+++...+...... ...||+.+.+..++.++.++..+++|||
T Consensus 144 ~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peS 223 (491)
T 4gc0_A 144 SMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLLYTVPES 223 (491)
T ss_dssp HHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHHHGGGSCCC
T ss_pred HHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhhhhhhcCCCC
Confidence 999999999999999999999999999999888887777654321 1248999999998888888888899999
Q ss_pred hHHHHhcCCHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHhhcccccHHHhhcchhHHHHHHHHHHHHHHHhhcCccee
Q 014616 137 PRWLFMKSDKEKAILVLSKIYDIARLEDEIDHLSAAAEEELRKKKTVRYLDVFKSKEIRLAFLAGAGLQAFQQFTGINTV 216 (421)
Q Consensus 137 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (421)
|+|+..+++.+++.+.+++....+...++..+..+.. .+.++.......++.+.... ......+.++.+.+.+
T Consensus 224 p~~L~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~ 296 (491)
T 4gc0_A 224 PRWLMSRGKQEQAEGILRKIMGNTLATQAVQEIKHSL---DHGRKTGGRLLMFGVGVIVI----GVMLSIFQQFVGINVV 296 (491)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHTTHHHHSCCTHHHH----HHHHHHHHHHTCHHHH
T ss_pred hHHHHHcCchhHHHHhHHHhcCCchhHHHHHHHHHHH---HhhhhhhhHHHHhcccHHHH----HHHHHHHHHHhhhhHH
Confidence 9999999999999888776654433322222221111 11111222233333333322 2223345556666777
Q ss_pred hhchHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHhhHHHHHHHHHHHHHHhhCCCCCCCcch
Q 014616 217 MYYSPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVY 296 (421)
Q Consensus 217 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 296 (421)
.+|.|.+.+..+.+..... ...........++.++++++.||+|||+.++.+.....++...+........ .
T Consensus 297 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~-------~ 368 (491)
T 4gc0_A 297 LYYAPEVFKTLGASTDIAL-LQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQA-------P 368 (491)
T ss_dssp HHHHHHHHHHSSCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTC-------C
T ss_pred HhcchHHHHhcCCCccchh-hHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhccc-------c
Confidence 7888888888887765543 3344445567889999999999999999988777766666655554332211 1
Q ss_pred hHHHHHHHHHHHHHhhcccccccceeccccCccchhhhhhHHHHHHHHHHHHHHHHHhHHHHH------HcCcchhhHHH
Q 014616 297 GWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAE------LVGTGATFLIL 370 (421)
Q Consensus 297 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~g~~~~~~~~ 370 (421)
.+..+....++...+..+.+++.+.+.+|++|++.|+++.|+.++.+++++++.+..++.+.+ ..+....|+++
T Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~ 448 (491)
T 4gc0_A 369 GIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIY 448 (491)
T ss_dssp HHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 233344444555566677788889999999999999999999999999999999888776533 34556788899
Q ss_pred HHHHHHHHHHHHhhccCCCCCCHHHHHHHHhc
Q 014616 371 AGIAVLAVVFVILFVPETQGLTFLEVEQMWKE 402 (421)
Q Consensus 371 ~~~~~~~~~~~~~~~~et~~~~~~~~~~~~~~ 402 (421)
++++++..++.+++.||||||++||+|+.+++
T Consensus 449 ~~~~~~~~i~~~~~~PETkg~tLeei~~~f~~ 480 (491)
T 4gc0_A 449 GCMGVLAALFMWKFVPETKGKTLEELEALWEP 480 (491)
T ss_dssp HHHHHHHHHHHHHHCCCCTTCCHHHHGGGTC-
T ss_pred HHHHHHHHHHHHheecCCCCCCHHHHHHHhCC
Confidence 99999998888899999999999999987655
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=99.98 E-value=1.3e-32 Score=266.38 Aligned_cols=353 Identities=16% Similarity=0.146 Sum_probs=243.4
Q ss_pred chhhhHHHHhhhhhhhcccchhHHHHHHHHHHHHHHHHHHh----cCChhHHHHHHHHHHhhhhhhhhhHHHHHhhcCCC
Q 014616 2 ALVGAIVGAASGGWINDAYGRKKATLLADVVFTAGAIIMAA----APDPYVLILGRLLVGLGVGIASVTAPVYIAEASPS 77 (421)
Q Consensus 2 ~~ig~~~g~~~~g~l~dr~Grr~~~~~~~~l~~i~~~~~~~----~~s~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~ 77 (421)
..++..+++++.|+++||+|||+++.++.++++++++++++ ++|++.++++|+++|++.+...+...+++.|++|+
T Consensus 71 ~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~ 150 (451)
T 1pw4_A 71 ISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQ 150 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTT
T ss_pred HHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCc
Confidence 35788999999999999999999999999999999999999 99999999999999999999999999999999999
Q ss_pred CCccchhchHHHHHHHHHHHHHHHhhhcccCCccchHHHHhhHHHHHHHHH-HhhcCCcChHHHHhcCCHHHHHHHHHHh
Q 014616 78 EVRGGLVSTNVLMITSGQFLSYLVNLAFTEVPGTWRWMLGVSAVPAIIQFV-LMLFMPESPRWLFMKSDKEKAILVLSKI 156 (421)
Q Consensus 78 ~~rg~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~Wr~~f~~~~~~~l~~~~-~~~~~~esp~~~~~~~~~~~~~~~~~~~ 156 (421)
++|++..+........|..+++.++..+....++||+.|++.++..++..+ ..+++||+|+....+++++...
T Consensus 151 ~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 224 (451)
T 1pw4_A 151 KERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKN------ 224 (451)
T ss_dssp THHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTCC------
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCChhhhcc------
Confidence 999999999999999999999888866544332499999998877766544 4567899887543221111000
Q ss_pred cChhhhHHHHHHHHHHHHHHHhhcccccHHHhhcchhHHHHHHHHHHHHHHHhhcCcceehhchHHHHHH-cCCCChHHH
Q 014616 157 YDIARLEDEIDHLSAAAEEELRKKKTVRYLDVFKSKEIRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQM-AGFQSNQLA 235 (421)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~ 235 (421)
++ +. +. +.++++....++...++.++++.++...+..... .........+.|.++++ .|.+..+.+
T Consensus 225 ---~~-~~---~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~g~~~~~~~ 291 (451)
T 1pw4_A 225 ---DY-PD---DY-NEKAEQELTAKQIFMQYVLPNKLLWYIAIANVFV-----YLLRYGILDWSPTYLKEVKHFALDKSS 291 (451)
T ss_dssp ---C------------------CCTHHHHHHTSSCHHHHHHHHHHHHH-----HHHHHHHHHHHHHHBTTBSCCCHHHHH
T ss_pred ---cc-cc---cc-hhhhhcccccccchHHHHHcCHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHhcCCCHHHHH
Confidence 00 00 00 0000101111111245677888776554433222 11222334456777765 688777666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc--CChhHHHHhhHHHH-HHHHHHHHHHhhCCCCCCCcchhHHHHHHHHHHHHHhh
Q 014616 236 LLLSLAVAGTNAVGTIVGIYLIDHF--GRKKLALSSLAGVI-ISLVLLSWAFISGSSASSSGVYGWIAVIGLALYIAFFA 312 (421)
Q Consensus 236 ~~~~~~~~~~~~~g~~~~g~l~dr~--grr~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (421)
...... ....+++.++.+++.||+ +||+.+..+..... ++...+ .... .. .. +..... .....+..
T Consensus 292 ~~~~~~-~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~-~~--~~-~~~~~~-~~~~g~~~ 360 (451)
T 1pw4_A 292 WAYFLY-EYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVY-----WMNP-AG--NP-TVDMIC-MIVIGFLI 360 (451)
T ss_dssp HHHHHH-HHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHT-----TSCC-TT--CH-HHHHHH-HHHHHHHH
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHH-----HHhc-cc--CH-HHHHHH-HHHHHHHH
Confidence 655554 455789999999999999 98887654443322 222111 1111 00 11 111111 11222223
Q ss_pred cccccccceeccccCccchhhhhhHHHHHHHHH-HHHHHHHHhHHHHHHcCcchhhHHHHHHHHHHHHHHHhh
Q 014616 313 PGMGPVPWTLNSEVYPEQYRGICGGMSATVNWI-SNLIVAQTFLTVAELVGTGATFLILAGIAVLAVVFVILF 384 (421)
Q Consensus 313 ~g~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 384 (421)
.+..+..+++..|.+|++.|+++.|+.++...+ ++.+++.+.+.+.+..|+...|++.++..+++.+..++.
T Consensus 361 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 433 (451)
T 1pw4_A 361 YGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVV 433 (451)
T ss_dssp THHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred hchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHH
Confidence 334455567889999999999999999999999 999999999999998898888888888877776655544
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=5.3e-29 Score=240.16 Aligned_cols=323 Identities=13% Similarity=0.129 Sum_probs=229.7
Q ss_pred chhhhHHHHhhhhhhhcccchhHHHHHHHHHHHHHHHHH---HhcCChhHHHHHHHHHHhhhhhhhhhHHHHHhhcCCCC
Q 014616 2 ALVGAIVGAASGGWINDAYGRKKATLLADVVFTAGAIIM---AAAPDPYVLILGRLLVGLGVGIASVTAPVYIAEASPSE 78 (421)
Q Consensus 2 ~~ig~~~g~~~~g~l~dr~Grr~~~~~~~~l~~i~~~~~---~~~~s~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~ 78 (421)
..++.++++++.|+++||+|||+++.++.++++++++++ ++++|++.+++.|+++|++.|...+...+++.|++|+|
T Consensus 70 ~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~ 149 (438)
T 3o7q_A 70 FYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPES 149 (438)
T ss_dssp HHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCST
T ss_pred HHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCch
Confidence 357889999999999999999999999999999999999 89999999999999999999999999999999999999
Q ss_pred CccchhchHHHHHHHHHHHHHHHhhhcc-cCCcc------------------------chHHHHhhHHHHHHHHHHhh--
Q 014616 79 VRGGLVSTNVLMITSGQFLSYLVNLAFT-EVPGT------------------------WRWMLGVSAVPAIIQFVLML-- 131 (421)
Q Consensus 79 ~rg~~~~~~~~~~~~g~~l~~~~~~~~~-~~~~~------------------------Wr~~f~~~~~~~l~~~~~~~-- 131 (421)
+|++..+........|..+++.++..+. ...+. ||+.|++.+...++..+..+
T Consensus 150 ~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~ 229 (438)
T 3o7q_A 150 SGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLT 229 (438)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999888776 44444 99999877766555444332
Q ss_pred cCCcChHHHHhcCCHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHhhcccccHHHhhcchhHHHHHHHHHHHHHHHhhc
Q 014616 132 FMPESPRWLFMKSDKEKAILVLSKIYDIARLEDEIDHLSAAAEEELRKKKTVRYLDVFKSKEIRLAFLAGAGLQAFQQFT 211 (421)
Q Consensus 132 ~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (421)
..||+++.. ++++ .+++...++++++++|.++...+.......
T Consensus 230 ~~p~~~~~~---~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 272 (438)
T 3o7q_A 230 KFPALQSDN---HSDA-----------------------------KQGSFSASLSRLARIRHWRWAVLAQFCYVG----- 272 (438)
T ss_dssp CCCCCTTTC---CCCS-----------------------------STTSHHHHHHHHTTCSHHHHHHHHHHHHHH-----
T ss_pred cCCcccccc---cccc-----------------------------cccchhhhHHHHHhChHHHHHHHHHHHHHH-----
Confidence 356665321 0000 001111234567788877765444322211
Q ss_pred CcceehhchHHH-HHHc-CCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHhhHHHHHHHHHHHHHHhhCCC
Q 014616 212 GINTVMYYSPTI-VQMA-GFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSS 289 (421)
Q Consensus 212 ~~~~~~~~~~~~-~~~~-g~~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~l~~~~~~~~~ 289 (421)
.......+.|.+ .++. |.+..+.+...... ....+++.++.++++||++||+.+..+.....++.+.+.. . .
T Consensus 273 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~---~-~- 346 (438)
T 3o7q_A 273 AQTACWSYLIRYAVEEIPGMTAGFAANYLTGT-MVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAF---A-G- 346 (438)
T ss_dssp HHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHH-HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH---C-C-
T ss_pred HHHHHHHHHHHHhhhccCCcchhHHHHHHHHH-HHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHH---c-C-
Confidence 122233455666 6665 88877766655554 4557899999999999999999877666555444433322 1 0
Q ss_pred CCCCcchhHHHHHHHHHHHHHhhcccccccceeccccCccchhhhhhHHHHHHHHHHHHHHHHHhHHHHHHcC-cchhhH
Q 014616 290 ASSSGVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELVG-TGATFL 368 (421)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~ 368 (421)
. . +. .... ....+......+..+++..|.+|++ |+.+.+... .+.+++.+++.+.+.+.+..| +...|+
T Consensus 347 ----~-~-~~-~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~ 416 (438)
T 3o7q_A 347 ----G-H-VG-LIAL-TLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAEL 416 (438)
T ss_dssp ----H-H-HH-HHHH-HHHHHHHTTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGH
T ss_pred ----C-c-HH-HHHH-HHHHHHHHHHHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHH
Confidence 0 0 11 1111 1222333344577778888999977 888888776 677999999999999999988 777777
Q ss_pred HHHHHHHHH
Q 014616 369 ILAGIAVLA 377 (421)
Q Consensus 369 ~~~~~~~~~ 377 (421)
+.+...++.
T Consensus 417 ~~~~~~~~~ 425 (438)
T 3o7q_A 417 IPALCFAVI 425 (438)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 655444433
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.9e-26 Score=225.66 Aligned_cols=379 Identities=15% Similarity=0.092 Sum_probs=214.1
Q ss_pred chhhhHHHHhhhhhhhcc-cchhHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHhhhhhhhhhHHHHHhhcCCCCC-
Q 014616 2 ALVGAIVGAASGGWINDA-YGRKKATLLADVVFTAGAIIMAAAPDPYVLILGRLLVGLGVGIASVTAPVYIAEASPSEV- 79 (421)
Q Consensus 2 ~~ig~~~g~~~~g~l~dr-~Grr~~~~~~~~l~~i~~~~~~~~~s~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~- 79 (421)
..++..++++++|+++|| +|||+++.++.++.+++++++++++|++.+++.|+++|++.|...+...++++|++|+++
T Consensus 63 ~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~ 142 (491)
T 4aps_A 63 YASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDR 142 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTT
T ss_pred HHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccc
Confidence 357889999999999999 899999999999999999999999999999999999999999999999999999999998
Q ss_pred -ccchhchHHHHHHHHHHHHHHHhhhcccCCccchHHHHhhHHHHHHHHHHhhcC-Cc----ChHHHHhcCCHHHHHHHH
Q 014616 80 -RGGLVSTNVLMITSGQFLSYLVNLAFTEVPGTWRWMLGVSAVPAIIQFVLMLFM-PE----SPRWLFMKSDKEKAILVL 153 (421)
Q Consensus 80 -rg~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~Wr~~f~~~~~~~l~~~~~~~~~-~e----sp~~~~~~~~~~~~~~~~ 153 (421)
|+...+........|..+++.++..+.... +||+.|++.++..++..+...+. |+ ..+....+.++++..+..
T Consensus 143 ~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~-g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (491)
T 4aps_A 143 RRDAGFSIFVFGINLGAFIAPLIVGAAQEAA-GYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVKPLL 221 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCSCCSCCCSHHHHHHHH
T ss_pred cceeeehHHHHHHHHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHHHHHHhCcccccccccCCCCccccchhHHHH
Confidence 666677777888899999988887765544 59999999876665554443221 11 100000011111111111
Q ss_pred HH----------------hcChhhhHHHHHHHH------HHH-HHHHhhcccccHHHhhcchhHHHHHHHHHHHHHHHhh
Q 014616 154 SK----------------IYDIARLEDEIDHLS------AAA-EEELRKKKTVRYLDVFKSKEIRLAFLAGAGLQAFQQF 210 (421)
Q Consensus 154 ~~----------------~~~~~~~~~~~~~~~------~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (421)
.. .....+.++...... ... .....+++.....+..+............ ....
T Consensus 222 ~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--- 297 (491)
T 4aps_A 222 VKVSLAVAGFIAIIVVMNLVGWNSLPAYINLLTIVAIAIPVFYFAWMISSVKVTSTEHLRVVSYIPLFIAAV-LFWA--- 297 (491)
T ss_dssp HHCCCCCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHHHC------------CTTHHHHHHHHH-HHHH---
T ss_pred HHHHHHHHHHHHHHHHHHhccCcccccchhhhhHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHH-HHHH---
Confidence 10 000000000000000 000 00000000000000011111111111111 1111
Q ss_pred cCcceehhchHHHHHH-cCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHH-----HhhHHHHHHHHHHHHHH
Q 014616 211 TGINTVMYYSPTIVQM-AGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLAL-----SSLAGVIISLVLLSWAF 284 (421)
Q Consensus 211 ~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~grr~~~~-----~~~~~~~~~~~~l~~~~ 284 (421)
.......+.|.+.++ .+.+....+...... .....++.++.+++.||++||+... .+.....++...+....
T Consensus 298 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (491)
T 4aps_A 298 -IEEQGSVVLATFAAERVDSSWFPVSWFQSLN-PLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPG 375 (491)
T ss_dssp -HHGGGGTHHHHHHHHSCCCSSSCSGGGTTHH-HHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHH
T ss_pred -HHhhccHHHHHHHHHHhccCccCHHHHhccc-hHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHH
Confidence 111222344555554 455433333333333 3346777888899999999986543 33333333333322221
Q ss_pred hhCCCCCCCcchhHHHHHHHHHHHHHhhcccccccceeccccCccchhhhhhHHHHHHHHHHHHHHHHHhHHHHHHcCcc
Q 014616 285 ISGSSASSSGVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELVGTG 364 (421)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~ 364 (421)
....... .... +....... ...+......+..+++..|.+|++.|+.+.|+.++...+++.+++.+.+...+ .+..
T Consensus 376 ~~~~~~~-~~~~-~~~~~~~~-l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~-~~~~ 451 (491)
T 4aps_A 376 ALYGTSG-KVSP-LWLVGSWA-LVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNA-KSEV 451 (491)
T ss_dssp HHCCCCT-TCCT-HHHHHHHH-HHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGG-SSTT
T ss_pred HhcCCCC-CccH-HHHHHHHH-HHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccHH
Confidence 1111000 0111 12222222 22222233456677889999999999999999999999999999888766554 3556
Q ss_pred hhhHHHHHHHHHHHHHHHhhccCCCCC
Q 014616 365 ATFLILAGIAVLAVVFVILFVPETQGL 391 (421)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~et~~~ 391 (421)
..|.+++..+++..++.+++.|+.+++
T Consensus 452 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (491)
T 4aps_A 452 AYFSYFGLGSVVLGIVLVFLSKRIQGL 478 (491)
T ss_dssp HHHHHTHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678888888777777777776766554
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.93 E-value=2.1e-27 Score=224.37 Aligned_cols=315 Identities=18% Similarity=0.183 Sum_probs=210.8
Q ss_pred chhhhHHHHhhhhhhhcccchhHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHhhhhhhhhhHHHHHhhcCCCCCcc
Q 014616 2 ALVGAIVGAASGGWINDAYGRKKATLLADVVFTAGAIIMAAAPDPYVLILGRLLVGLGVGIASVTAPVYIAEASPSEVRG 81 (421)
Q Consensus 2 ~~ig~~~g~~~~g~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~s~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg 81 (421)
..++..+++++.|+++||+|||+++..+.++.++++.++++++|++.+++.|+++|++.+...+....++.|+.|+|+|+
T Consensus 44 ~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~ 123 (375)
T 2gfp_A 44 YLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLR 123 (375)
T ss_dssp HHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCC
T ss_pred HHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHH
Confidence 35788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhchHHHHHHHHHHHHHHHhhhcccCCccchHHHHhhHHHHHHHHH-HhhcCCcChHHHHhcCCHHHHHHHHHHhcChh
Q 014616 82 GLVSTNVLMITSGQFLSYLVNLAFTEVPGTWRWMLGVSAVPAIIQFV-LMLFMPESPRWLFMKSDKEKAILVLSKIYDIA 160 (421)
Q Consensus 82 ~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~Wr~~f~~~~~~~l~~~~-~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~ 160 (421)
+..+........|..+++.++..+.+.. +||+.|++.++..++..+ ....+||+|+... +
T Consensus 124 ~~~~~~~~~~~~g~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~--------------- 184 (375)
T 2gfp_A 124 HANSLLNMGILVSPLLAPLIGGLLDTMW-NWRACYLFLLVLCAGVTFSMARWMPETRPVDA---P--------------- 184 (375)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHSSCHH-HHHHHHHHHHHHHHHHHCCCCCSSCCCSTTTC---C---------------
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHhc-cHHHHHHHHHHHHHHHHHHHHHHCcccCCCCc---c---------------
Confidence 9999999999999999999888776544 599999988877766655 4556788764310 0
Q ss_pred hhHHHHHHHHHHHHHHHhhcccccHHHhhcchhHHHHHHHHHHHHHHHhhcCcceehhchHHHHH-HcCCCChHHHHHHH
Q 014616 161 RLEDEIDHLSAAAEEELRKKKTVRYLDVFKSKEIRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQ-MAGFQSNQLALLLS 239 (421)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~ 239 (421)
++++..++++.+|+|.++...+....... .......+.|.+.+ ..|.+..+.+....
T Consensus 185 -----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~g~~~~~~g~~~~ 242 (375)
T 2gfp_A 185 -----------------RTRLLTSYKTLFGNSGFNCYLLMLIGGLA-----GIAAFEACSGVLMGAVLGLSSMTVSILFI 242 (375)
T ss_dssp -----------------CCCTTTCSTHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHCSCSSHHHHHHHHHHHHHHHH
T ss_pred -----------------cccHHHHHHHHhcCcchHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 01112234566777776654443322111 11112223333333 35666555555544
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCChhHHHHhhHH-HHHHHHHHHHHHhhCCCCCCCcchhHHHHHHHHHHHHHhhcccccc
Q 014616 240 LAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAG-VIISLVLLSWAFISGSSASSSGVYGWIAVIGLALYIAFFAPGMGPV 318 (421)
Q Consensus 240 ~~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 318 (421)
.. ....+++.++.+++.||.+++ ... +... ...+...+....... ...+.......+. .+......+.
T Consensus 243 ~~-~~~~~~~~~~~~~l~~r~~~~-~~~-~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~l~-g~~~~~~~~~ 311 (375)
T 2gfp_A 243 LP-IPAAFFGAWFAGRPNKRFSTL-MWQ-SVICCLLAGLLMWIPDWFGV-------MNVWTLLVPAALF-FFGAGMLFPL 311 (375)
T ss_dssp TH-HHHHHHHHHHHHTTTTHHHHH-HHH-HHHHHHHTSSSSSHHHHHHH-------HHHHHHHHHHHHH-HHHHHHTSST
T ss_pred HH-HHHHHHHHHHHHHHHHHHHHH-HHH-HHHHHHHHHHHHHHHhhhcc-------ccHHHHHHHHHHH-HHHHHHhhHH
Confidence 43 344677788888888887762 211 1111 111111101100000 0111111211121 2222234567
Q ss_pred cceeccccCccchhhhhhHHHHHHHHHHHHHHHHHhHHHHHHcCcchhhHH
Q 014616 319 PWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELVGTGATFLI 369 (421)
Q Consensus 319 ~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 369 (421)
..++..|.+| +.|+++.|+.+..+.+++.+++...+.+.+..++...+.+
T Consensus 312 ~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~ 361 (375)
T 2gfp_A 312 ATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAMLPQTGQGSLGLLM 361 (375)
T ss_dssp THHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHH
Confidence 7788899998 8899999999999999999888888877766555444433
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.4e-22 Score=199.96 Aligned_cols=129 Identities=17% Similarity=0.273 Sum_probs=112.0
Q ss_pred chhhhHHHHhhhhhhhccc-chhHHHHHHHHHHHHHHHHHHhcC-ChhHHHHHHHHHHhhhhhhhhhHHHHHhhcCCCCC
Q 014616 2 ALVGAIVGAASGGWINDAY-GRKKATLLADVVFTAGAIIMAAAP-DPYVLILGRLLVGLGVGIASVTAPVYIAEASPSEV 79 (421)
Q Consensus 2 ~~ig~~~g~~~~g~l~dr~-Grr~~~~~~~~l~~i~~~~~~~~~-s~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~ 79 (421)
..++..+++++.|+++||+ |||+++.++.++++++.+++++++ |++.+++.|+++|++.+...+...+++.|++|+++
T Consensus 63 ~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~ 142 (524)
T 2xut_A 63 FVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSN 142 (524)
T ss_dssp HHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTT
T ss_pred HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccc
Confidence 3567889999999999999 999999999999999999999999 99999999999999999999999999999999999
Q ss_pred ccchhch---HHHHHHHHHHHHHHHhhhcccCCccchHHHHhhHHHHHHHHHHhh
Q 014616 80 RGGLVST---NVLMITSGQFLSYLVNLAFTEVPGTWRWMLGVSAVPAIIQFVLML 131 (421)
Q Consensus 80 rg~~~~~---~~~~~~~g~~l~~~~~~~~~~~~~~Wr~~f~~~~~~~l~~~~~~~ 131 (421)
|+...+. ......+|..+++.++..+.... +||+.|++.++..++..+...
T Consensus 143 r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~-g~~~~f~~~~~~~~~~~~~~~ 196 (524)
T 2xut_A 143 KSLAQKAFDMFYFTINFGSFFASLSMPLLLKNF-GAAVAFGIPGVLMFVATVFFW 196 (524)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTS-CHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHHHHHHH
Confidence 9866555 77788888888888877665544 599999998877666555443
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=5.9e-25 Score=210.64 Aligned_cols=345 Identities=11% Similarity=0.058 Sum_probs=187.9
Q ss_pred chhhhHHHHhhhhhhhcccchhHHHHHHHHHHHHHHHHH---HhcCCh-hHHHHHHHHHHhhhhhhhhhHHHHHhhcCCC
Q 014616 2 ALVGAIVGAASGGWINDAYGRKKATLLADVVFTAGAIIM---AAAPDP-YVLILGRLLVGLGVGIASVTAPVYIAEASPS 77 (421)
Q Consensus 2 ~~ig~~~g~~~~g~l~dr~Grr~~~~~~~~l~~i~~~~~---~~~~s~-~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~ 77 (421)
..++..++++++|+++||+|||+++.++.+++++++... ++++.. ..++..|++.|++.|...+.....+.++.++
T Consensus 52 ~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 131 (417)
T 2cfq_A 52 ISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEK 131 (417)
T ss_dssp HHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHHHHHHTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 357889999999999999999999999888776533211 222111 1134456666665555444444444444433
Q ss_pred --CCccchhchHHHHHHHHHHHHHHHhhhcccCCccchHHHHhhHHHHHHHHHHhhcCCcChHHHHhcCCHHHHHHHHHH
Q 014616 78 --EVRGGLVSTNVLMITSGQFLSYLVNLAFTEVPGTWRWMLGVSAVPAIIQFVLMLFMPESPRWLFMKSDKEKAILVLSK 155 (421)
Q Consensus 78 --~~rg~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~Wr~~f~~~~~~~l~~~~~~~~~~esp~~~~~~~~~~~~~~~~~~ 155 (421)
++|+...+........|..+++.++..+.. .+||+.|++.++..++..+..++.||+|+.. .+++++.
T Consensus 132 ~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~--~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~------ 201 (417)
T 2cfq_A 132 VSRRSNFEFGRARMFGCVGWALGASIVGIMFT--INNQFVFWLGSGCALILAVLLFFAKTDAPSS--ATVANAV------ 201 (417)
T ss_dssp HHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHH--HCSHHHHTTTTTTTTTHHHHSCSSCCCCSCS--SCSSSSS------
T ss_pred hhhhcccchHHHHHHHHHHHHHHHHHHHHHHH--hchhHHHHHHHHHHHHHHHHHHHcCcccccc--ccccccc------
Confidence 234544443333344555555555544433 2599999988776555555544444333110 0000000
Q ss_pred hcChhhhHHHHHHHHHHHHHHHhhcccccHHHhhcchhHHHHHHHHHHHHHHHhhcCcceehhchHHHHHHc-CC---CC
Q 014616 156 IYDIARLEDEIDHLSAAAEEELRKKKTVRYLDVFKSKEIRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQMA-GF---QS 231 (421)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~---~~ 231 (421)
+ ++.++.+..++++++++|+++...+........ +.......|.++++. +. +.
T Consensus 202 ----~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~ 258 (417)
T 2cfq_A 202 ----G--------------ANHSAFSLKLALELFRQPKLWFLSLYVIGVSCT-----YDVFDQQFANFFTSFFATGEQGT 258 (417)
T ss_dssp ----S--------------SCCCCCCHHHHHHHTTCHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHTSSSHHHHT
T ss_pred ----c--------------cccccccHHHHHHHhcCCchhhHHHHHHHHHHH-----HHHHHHHHHHHHHHHHhccCCCh
Confidence 0 000000111234567777766543322211111 111111234444332 21 12
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHhhHHHHHHHHHHHHHHhhCCCCCCCcchhHHHHHHHHHHHHHh
Q 014616 232 NQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLALYIAFF 311 (421)
Q Consensus 232 ~~~~~~~~~~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (421)
...+.... ......+++.++.++++||++||+.+..+.....+....+.. .. .. +.......+.. +.
T Consensus 259 ~~~g~~~~-~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~------~~---~~--~~~~~~~~l~~-~~ 325 (417)
T 2cfq_A 259 RVFGYVTT-MGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSF------AT---SA--LEVVILKTLHM-FE 325 (417)
T ss_dssp HHHHHHHH-HHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTT------CC---SH--HHHHHHTTHHH-HH
T ss_pred hHHHHHHH-HHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHH------hc---cH--HHHHHHHHHHH-HH
Confidence 22233333 333446788899999999999999876555443333222110 11 01 11111111111 11
Q ss_pred hcccccccceeccccCccchhhhhhHHH-HHHHHHHHHHHHHHhHHHHHHcCcchhhHHHHHHHHHHHHHHHhhccCCCC
Q 014616 312 APGMGPVPWTLNSEVYPEQYRGICGGMS-ATVNWISNLIVAQTFLTVAELVGTGATFLILAGIAVLAVVFVILFVPETQG 390 (421)
Q Consensus 312 ~~g~~~~~~~~~~e~~p~~~r~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~et~~ 390 (421)
.....+..+.+.+|.+|++.|+++.+.. ++.+.+++.+++.+.+.+.+..|+...|.+.++.++++.++.+.+.||+|+
T Consensus 326 ~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~~~~~ 405 (417)
T 2cfq_A 326 VPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPGP 405 (417)
T ss_dssp HHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSCCSCT
T ss_pred HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhcCCCc
Confidence 1111233456889999999999998884 778889999999999988887777778888888887777766666677654
Q ss_pred CC
Q 014616 391 LT 392 (421)
Q Consensus 391 ~~ 392 (421)
-.
T Consensus 406 ~~ 407 (417)
T 2cfq_A 406 LS 407 (417)
T ss_dssp TC
T ss_pred hH
Confidence 33
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=99.29 E-value=1.1e-11 Score=119.31 Aligned_cols=165 Identities=14% Similarity=0.102 Sum_probs=116.1
Q ss_pred ehhchHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHhhHHHHHHHHHHHHHHh-hCCCCCCCc
Q 014616 216 VMYYSPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFI-SGSSASSSG 294 (421)
Q Consensus 216 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~ 294 (421)
...+.|.+.++. .+..+.+........ ...++.++.|+++||+|||+.+..+.....++.++..+... .. +..
T Consensus 47 ~~~~~~~~~~~~-~s~~~~g~~~~~~~~-~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~---~~~- 120 (451)
T 1pw4_A 47 FALAMPYLVEQG-FSRGDLGFALSGISI-AYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATS---SIA- 120 (451)
T ss_dssp HHHHHHHTTSST-TCSSCHHHHHHHHHH-HHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHS---SSS-
T ss_pred HHHHHHHHHHHh-ccHhHHHHHHHHHHH-HHHHHHHhHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhccc---cHH-
Confidence 334566666777 777777777666554 47889999999999999999988777766666555543110 11 111
Q ss_pred chhHHHHHHHHHHHHHhhcccccccceeccccCccchhhhhhHHHHHHHHHHHHHHHHHhHHHHHHcC-cchhhHHHHHH
Q 014616 295 VYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELVG-TGATFLILAGI 373 (421)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~ 373 (421)
...... +...+......+...++..|.+|++.|+.+.++.+....+|..+++.+.+.+.+..+ |.+.|++.+..
T Consensus 121 ----~l~~~~-~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~~~ 195 (451)
T 1pw4_A 121 ----VMFVLL-FLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFC 195 (451)
T ss_dssp ----HHHHHH-HHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHH
T ss_pred ----HHHHHH-HHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 111111 111122222345666788999999999999999999999999999888888778888 99999999988
Q ss_pred HHHHHHHHHhhccCCCCC
Q 014616 374 AVLAVVFVILFVPETQGL 391 (421)
Q Consensus 374 ~~~~~~~~~~~~~et~~~ 391 (421)
.++..++.+++.||++.+
T Consensus 196 ~~~~~~~~~~~~~~~~~~ 213 (451)
T 1pw4_A 196 AILVALFAFAMMRDTPQS 213 (451)
T ss_dssp HHHHHHHHHHHCCCSSTT
T ss_pred HHHHHHHHHhhccCCHhh
Confidence 887777676777876543
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=99.15 E-value=3.4e-10 Score=108.30 Aligned_cols=166 Identities=17% Similarity=0.109 Sum_probs=110.5
Q ss_pred eehhchHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHhhHHHHHHHHHHHHHHhhCCCCCCCc
Q 014616 215 TVMYYSPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSG 294 (421)
Q Consensus 215 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 294 (421)
......|.+.++.|.+..+.+...+.... ...++.++.|+++||+|||+.++.+.....++..+........ +
T Consensus 44 ~~~~~~~~~~~~~g~s~~~~g~~~~~~~~-~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~---~--- 116 (438)
T 3o7q_A 44 LNDILLPQFQQAFTLTNFQAGLIQSAFYF-GYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIM---N--- 116 (438)
T ss_dssp HHHHHHHHHHHHSCCCSHHHHHHHHHHHH-HHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTT---C---
T ss_pred hHHHHHHHHHHHcCCCHHHHHHHHHHHHH-HHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccccc---c---
Confidence 33445677888899999888877766554 4788999999999999999998887777666665542211111 1
Q ss_pred chhHHHHHHHHHHHHHhhcccccccceeccccCccchhhhhhHHHHHHHHHHHHHHHHHhHHHH-HHcC-----------
Q 014616 295 VYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVA-ELVG----------- 362 (421)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~g----------- 362 (421)
+ +...... +..........+...++..|.+|++.|+.+.+..++...+|..+++.+...+. +..+
T Consensus 117 -~-~~l~~~~-~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~ 193 (438)
T 3o7q_A 117 -Y-TLFLVGL-FIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMS 193 (438)
T ss_dssp -H-HHHHHHH-HHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSC
T ss_pred -H-HHHHHHH-HHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCC
Confidence 1 1111111 11112222234555678899999999999999999999999999998887776 4433
Q ss_pred --------------cchhhHHHHHHHHHHHHHHHh-hccCCCC
Q 014616 363 --------------TGATFLILAGIAVLAVVFVIL-FVPETQG 390 (421)
Q Consensus 363 --------------~~~~~~~~~~~~~~~~~~~~~-~~~et~~ 390 (421)
|.+.|++.+...++..+..++ ..||+++
T Consensus 194 ~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 236 (438)
T 3o7q_A 194 PEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQS 236 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTT
T ss_pred cchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCcccc
Confidence 566776666666555444333 2455543
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.10 E-value=1.5e-10 Score=108.59 Aligned_cols=161 Identities=11% Similarity=0.082 Sum_probs=113.4
Q ss_pred hchHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHhhHHHHHHHHHHHHHHhhCCCCCCCcchh
Q 014616 218 YYSPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYG 297 (421)
Q Consensus 218 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 297 (421)
...|.+.++.|.+..+.+........ ...++.+..|+++||+|||+.+..+.....++........ .+
T Consensus 21 ~~~~~~~~~~g~s~~~~g~~~~~~~~-~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~----------~~- 88 (375)
T 2gfp_A 21 PAIADMARDLNVREGAVQSVMGAYLL-TYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTS----------SL- 88 (375)
T ss_dssp HHHHHHHTTSSSTTHHHHHHHHHHHH-HHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHHH----------HH-
T ss_pred hhhHHHHHHcCCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhc----------cH-
Confidence 34566677889888887776666554 4788999999999999999998877766666655544321 01
Q ss_pred HHHHHHHHHHHHHhhcccccccceeccccCccchhhhhhHHHHHHHHHHHHHHHHHhHHHHHHcCcchhhHHHHHHHHHH
Q 014616 298 WIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELVGTGATFLILAGIAVLA 377 (421)
Q Consensus 298 ~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 377 (421)
+..... .+..........+...++..|.+|+++|+.+.+..+....++..+++.+.+.+.+..+|...+.+.+...++.
T Consensus 89 ~~l~~~-~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 167 (375)
T 2gfp_A 89 TVLIAA-SAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGV 167 (375)
T ss_dssp HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-HHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 111111 1111122222345566788999999999999999999999999999888887777778888888888877777
Q ss_pred HHHHHhhccCCCCC
Q 014616 378 VVFVILFVPETQGL 391 (421)
Q Consensus 378 ~~~~~~~~~et~~~ 391 (421)
.+...+..||++++
T Consensus 168 ~~~~~~~~~~~~~~ 181 (375)
T 2gfp_A 168 TFSMARWMPETRPV 181 (375)
T ss_dssp HCCCCCSSCCCSTT
T ss_pred HHHHHHHCcccCCC
Confidence 66566667887544
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=99.06 E-value=9.5e-10 Score=107.96 Aligned_cols=157 Identities=13% Similarity=0.097 Sum_probs=104.4
Q ss_pred chHHHH-HHcC------CCChHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CChhHHHHhhHHHHHHHHHHHHHHhhCCCC
Q 014616 219 YSPTIV-QMAG------FQSNQLALLLSLAVAGTNAVGTIVGIYLIDHF-GRKKLALSSLAGVIISLVLLSWAFISGSSA 290 (421)
Q Consensus 219 ~~~~~~-~~~g------~~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~-grr~~~~~~~~~~~~~~~~l~~~~~~~~~~ 290 (421)
+.+.++ ++.| .+..+.+........ ...++.+++|+++||+ |||+.+..+.....++.++.... . .
T Consensus 34 ~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~-~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~---~--~ 107 (524)
T 2xut_A 34 ILTPFLMTALLLSIPEELRGAVAKDVFHSFVI-GVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIF---E--H 107 (524)
T ss_dssp HHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHH-HHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHT---S--S
T ss_pred HHHHHHHHHhccccccccCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHh---c--c
Confidence 344444 5577 788777776666544 4788999999999999 99998877666555555444321 1 0
Q ss_pred CCCcchhHHHHHHHHHHHHHhhcccccccceeccccCccchhhhhhHH---HHHHHHHHHHHHHHHhHHHHHHcCcchhh
Q 014616 291 SSSGVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGM---SATVNWISNLIVAQTFLTVAELVGTGATF 367 (421)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~p~~~r~~~~g~---~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 367 (421)
+ . +...... +...+......+...++..|.+|++.|+...+. .++...+|..+++.+.+.+.+..+|...|
T Consensus 108 ~----~-~~~~~~~-~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f 181 (524)
T 2xut_A 108 S----V-QGFYTGL-FLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAF 181 (524)
T ss_dssp C----H-HHHHHHH-HHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHH
T ss_pred c----H-HHHHHHH-HHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHH
Confidence 0 1 1111111 112222233456667888999999999876666 78888899999998888888888888888
Q ss_pred HHHHHHHHHHHHHHHhhccC
Q 014616 368 LILAGIAVLAVVFVILFVPE 387 (421)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~e 387 (421)
.+.+...++..+..++..|+
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~ 201 (524)
T 2xut_A 182 GIPGVLMFVATVFFWLGRKR 201 (524)
T ss_dssp HHHHHHHHHHHHHHHSSSSS
T ss_pred HHHHHHHHHHHHHHHHhccc
Confidence 88877766665544443333
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.01 E-value=6.1e-09 Score=101.24 Aligned_cols=145 Identities=13% Similarity=0.107 Sum_probs=100.1
Q ss_pred cCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCChhHHHHhhHHHHHHHHHHHHHHhhCCCCCCCcchhHHHHHHHH
Q 014616 227 AGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDH-FGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLA 305 (421)
Q Consensus 227 ~g~~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr-~grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (421)
.|.+..+.+...+.... ...++.+++|+++|| +|||+.+..+.....++.++... ..+... . .....
T Consensus 49 ~~~s~~~~~~~~~~~~~-~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~------~~~~~~----~-~~~~~ 116 (491)
T 4aps_A 49 LHITRATAASIMAIYAS-MVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLAL------PFGASA----L-FGSII 116 (491)
T ss_dssp CCSCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHS------CCSTTH----H-HHHHH
T ss_pred cCCCHHHHHHHHHHHHH-HHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHH------hhhHHH----H-HHHHH
Confidence 78888887776666554 478999999999999 89999988776665555444322 111111 1 11111
Q ss_pred HHHHHhhcccccccceeccccCccch--hhhhhHHHHHHHHHHHHHHHHHhHHHHHHcCcchhhHHHHHHHHHHHHHHHh
Q 014616 306 LYIAFFAPGMGPVPWTLNSEVYPEQY--RGICGGMSATVNWISNLIVAQTFLTVAELVGTGATFLILAGIAVLAVVFVIL 383 (421)
Q Consensus 306 ~~~~~~~~g~~~~~~~~~~e~~p~~~--r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 383 (421)
+ ..+......+...++..|.+|++. |+.+.+..+....++..+++.+.+.+.+..+|.+.|++.+...++..+..++
T Consensus 117 l-~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~ 195 (491)
T 4aps_A 117 L-IIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYF 195 (491)
T ss_dssp H-HHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred H-HHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 1 111222234566678899999988 7777777889999999999999999888899998888887776666555444
Q ss_pred h
Q 014616 384 F 384 (421)
Q Consensus 384 ~ 384 (421)
.
T Consensus 196 ~ 196 (491)
T 4aps_A 196 G 196 (491)
T ss_dssp H
T ss_pred h
Confidence 3
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=98.95 E-value=5.6e-10 Score=106.40 Aligned_cols=134 Identities=13% Similarity=0.029 Sum_probs=103.8
Q ss_pred hhhHHHHhhhhhhhcccchhHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHhhhhhhhhhHHHHHhhcCCCCCccch
Q 014616 4 VGAIVGAASGGWINDAYGRKKATLLADVVFTAGAIIMAAAPDPYVLILGRLLVGLGVGIASVTAPVYIAEASPSEVRGGL 83 (421)
Q Consensus 4 ig~~~g~~~~g~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~s~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg~~ 83 (421)
++.+++.++.|+++||+|||+++..+.++.+++....++.++.+.+++..++.|++.+...+....+++|.+|++.||..
T Consensus 270 ~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~ 349 (417)
T 2cfq_A 270 LLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATI 349 (417)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
Confidence 35567889999999999999999999988888877778888888888888899998887777788899999999999977
Q ss_pred hch-HHHHHHHHHHHHHHHhhhcccCCccchHHHHhhHHHHHHHHHH-hhcCCcChH
Q 014616 84 VST-NVLMITSGQFLSYLVNLAFTEVPGTWRWMLGVSAVPAIIQFVL-MLFMPESPR 138 (421)
Q Consensus 84 ~~~-~~~~~~~g~~l~~~~~~~~~~~~~~Wr~~f~~~~~~~l~~~~~-~~~~~esp~ 138 (421)
.+. .......|..+++.+.+.+.+.. +++..|.+.++..++..+. ....||.++
T Consensus 350 ~g~~~~~~~~lg~~~gp~l~G~l~~~~-g~~~~f~~~~~~~l~~~~~~~~~~~~~~~ 405 (417)
T 2cfq_A 350 YLVCFCFFKQLAMIFMSVLAGNMYESI-GFQGAYLVLGLVALGFTLISVFTLSGPGP 405 (417)
T ss_dssp HHHHHTTTHHHHHHHHTHHHHTHHHHS-HHHHHHHHHHHHHHHHHHHHTTSSCCSCT
T ss_pred HHHHHHHHHhHHHHHhhhhHHHHHHhc-CcHHHHHHHHHHHHHHHHHHHhhhcCCCc
Confidence 665 35555677777777666554433 4788888877777666554 344566544
|
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=98.89 E-value=6.8e-09 Score=100.85 Aligned_cols=123 Identities=15% Similarity=0.058 Sum_probs=71.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHhhHHHHHHHHHHHHHHhhCCCC----CCC--cchhHHHHHHHHHHH
Q 014616 235 ALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSA----SSS--GVYGWIAVIGLALYI 308 (421)
Q Consensus 235 ~~~~~~~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~~--~~~~~~~~~~~~~~~ 308 (421)
+...+... .+.++|+++.|+++||+|||+.+..+.....++.++.++........ ... ....+..+...=+..
T Consensus 58 g~~~s~~~-~G~~iG~~~~G~laDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~ 136 (491)
T 4gc0_A 58 GFCVASAL-IGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIG 136 (491)
T ss_dssp HHHHHTHH-HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHH
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHH
Confidence 33334333 34689999999999999999998877766666655443211000000 000 001111111112222
Q ss_pred HHhhcccccccceeccccCccchhhhhhHHHHHHHHHHHHHHHHHhHHHH
Q 014616 309 AFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVA 358 (421)
Q Consensus 309 ~~~~~g~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~ 358 (421)
.+...+..+...++..|..|++.|+...+..+....++...+........
T Consensus 137 G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~ 186 (491)
T 4gc0_A 137 GIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIA 186 (491)
T ss_dssp HHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhc
Confidence 23333345666788999999999999998888877777666554444333
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 421 | ||||
| d1pw4a_ | 447 | f.38.1.1 (A:) Glycerol-3-phosphate transporter {Es | 5e-17 | |
| d1pv7a_ | 417 | f.38.1.2 (A:) Lactose permease {Escherichia coli [ | 2e-07 |
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} Length = 447 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Score = 80.1 bits (196), Expect = 5e-17
Identities = 51/393 (12%), Positives = 120/393 (30%), Gaps = 30/393 (7%)
Query: 1 MALVGAIVGAASGGWINDAYGRKKATLLADVVFTAGAIIMAAAPDP----YVLILGRLLV 56
+ G ++D + ++ A + M P V+ + L
Sbjct: 67 GISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLC 126
Query: 57 GLGVGIASVTAPVYIAEASPSEVRGGLVSTNVLMITSGQFLSYLVNLAFTEVPGTWRWML 116
G G+ + + RGG+VS G + L+ L W L
Sbjct: 127 GWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAAL 186
Query: 117 GVSAVPAIIQFVLMLFMPESPRWLFMKSDKEKAILVLSKIYDIARLEDEIDHLSAAAEEE 176
+ A AI+ + M + I +++ E+
Sbjct: 187 YMPAFCAILVALFAFAMMRDTPQ-------------SCGLPPIEEYKNDYPDDYNEKAEQ 233
Query: 177 LRKKKTVRYLDVFKSKEIRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQMAGFQSNQLAL 236
K + V +K + +A + ++ +SPT ++ + +
Sbjct: 234 ELTAKQIFMQYVLPNKLLWYIAIA-----NVFVYLLRYGILDWSPTYLKEVKHFALDKSS 288
Query: 237 LLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVY 296
GT++ ++ D R + + + + + +++ +
Sbjct: 289 WAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAG------- 341
Query: 297 GWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLT 356
+ + I F G + E+ P++ G G + ++ + A +
Sbjct: 342 NPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVG 401
Query: 357 -VAELVGTGATFLILAGIAVLAVVFVILFVPET 388
+ G F+++ G ++LAV+ +I+ +
Sbjct: 402 YTVDFFGWDGGFMVMIGGSILAVILLIVVMIGE 434
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} Length = 417 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Score = 50.5 bits (119), Expect = 2e-07
Identities = 32/396 (8%), Positives = 97/396 (24%), Gaps = 37/396 (9%)
Query: 1 MALVGAIVGAASGGWINDAYGRKKATLLADVVFTAGAIIMAAAPDPYVLILGRLLVGLGV 60
+ +++ G ++D G +K L +L L+ +
Sbjct: 51 AISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVG 110
Query: 61 GIASVTAPVYIAEASPSEVRGGLVSTNVLMITSGQFLSYLVNLAFTEVPGTWRWMLGVSA 120
GI A A + + +
Sbjct: 111 GIYLGFCFNAGAPAVEA-----------------------FIEKVSRRSNFEFGRARMFG 147
Query: 121 VPAIIQFVLMLFMPESPRWLFMKSDKEKAILVLSKIYDIARLEDEIDHLSAAAEEELRKK 180
++ + + F+ L+L+ + A+ + A A
Sbjct: 148 CVGWALGASIVGIMFTINNQFVFWLGSGCALILAVLLFFAKTDAPSSATVANAVGANHSA 207
Query: 181 KTVRYLDVFKSKEIRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQMAGFQSNQLALLLSL 240
+++ + + + + + + ++
Sbjct: 208 FSLKLALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTM 267
Query: 241 AVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGWIA 300
++ + + G+ L L+ + + +
Sbjct: 268 GELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATS-------------ALE 314
Query: 301 VIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRG-ICGGMSATVNWISNLIVAQTFLTVAE 359
V+ L F P + + + + ++ I ++ + ++ + E
Sbjct: 315 VVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYE 374
Query: 360 LVGTGATFLILAGIAVLAVVFVILFVPETQGLTFLE 395
+G +L+L +A+ + + + L+ L
Sbjct: 375 SIGFQGAYLVLGLVALGFTLISVFTLSGPGPLSLLR 410
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 421 | |||
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 99.98 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.88 | |
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 99.28 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.05 |
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=99.98 E-value=4.9e-32 Score=259.28 Aligned_cols=358 Identities=15% Similarity=0.121 Sum_probs=234.1
Q ss_pred chhhhHHHHhhhhhhhcccchhHHHHHHHHHHHHHHHHHHhc----CChhHHHHHHHHHHhhhhhhhhhHHHHHhhcCCC
Q 014616 2 ALVGAIVGAASGGWINDAYGRKKATLLADVVFTAGAIIMAAA----PDPYVLILGRLLVGLGVGIASVTAPVYIAEASPS 77 (421)
Q Consensus 2 ~~ig~~~g~~~~g~l~dr~Grr~~~~~~~~l~~i~~~~~~~~----~s~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~ 77 (421)
..+++.+++++.|+++||+|||+++.++.++.++++++++++ +++..+++.|+++|++.|...+....++.|++|+
T Consensus 68 ~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~ 147 (447)
T d1pw4a_ 68 ISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQ 147 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTT
T ss_pred HHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHh
Confidence 457889999999999999999999999999999999998876 5889999999999999999999999999999999
Q ss_pred CCccchhchHHHHHHHHHHHHHHHhhhcccCCccchHHHHhhHHHHHHHHHH-hhcCCcChHHHHhcCCHHHHHHHHHHh
Q 014616 78 EVRGGLVSTNVLMITSGQFLSYLVNLAFTEVPGTWRWMLGVSAVPAIIQFVL-MLFMPESPRWLFMKSDKEKAILVLSKI 156 (421)
Q Consensus 78 ~~rg~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~Wr~~f~~~~~~~l~~~~~-~~~~~esp~~~~~~~~~~~~~~~~~~~ 156 (421)
++|++..+........|..+++.++.......++||+.|++.+...++..+. ..+.+|+|+......+++...
T Consensus 148 ~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 221 (447)
T d1pw4a_ 148 KERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKN------ 221 (447)
T ss_dssp THHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTCC------
T ss_pred hcccccccccccccchhhhhhhhhhhhHhhhhhcccccchhhhhhHHHHHHHHHHhcccchhhcccchhhhhhh------
Confidence 9999999999999999988888777665554557999999888777665444 455677765433222111100
Q ss_pred cChhhhHHHHHHHHHHHHHHHhhcccccHHHhhcchhHHHHHHHHHHHHHHHhhcCcceehhchHHHHHH-cCCCChHHH
Q 014616 157 YDIARLEDEIDHLSAAAEEELRKKKTVRYLDVFKSKEIRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQM-AGFQSNQLA 235 (421)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~ 235 (421)
+ ..++. .+..++....+....+..++++.++........... ..+....+.|.++++ .+.+..+.+
T Consensus 222 ----~---~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (447)
T d1pw4a_ 222 ----D---YPDDY-NEKAEQELTAKQIFMQYVLPNKLLWYIAIANVFVYL-----LRYGILDWSPTYLKEVKHFALDKSS 288 (447)
T ss_dssp ----C-----------------CCTHHHHHHTSSCHHHHHHHHHHHHHHH-----HHHHHHHHHHHHBTTBSCCCHHHHH
T ss_pred ----h---cccch-hhccccccchhhHHHHHHHcCchHHHHHHHhhhhhh-----hhhcchhhhhhhcccccccccchhh
Confidence 0 00000 000111111222334566777776654433222111 122223345555544 566666555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHhhHHHHHHHHHHHHHHhhCCCCCCCcchhHHHHHHHHHHHHHhhccc
Q 014616 236 LLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLALYIAFFAPGM 315 (421)
Q Consensus 236 ~~~~~~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 315 (421)
..... .....+++.+++|++.||.+|++.................. ...... . ..+...... +...+...+.
T Consensus 289 ~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~---~~~~~~~~~-~~~g~~~~~~ 360 (447)
T d1pw4a_ 289 WAYFL-YEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIV--YWMNPA-G---NPTVDMICM-IVIGFLIYGP 360 (447)
T ss_dssp HHHHH-HHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHH--TTSCCT-T---CHHHHHHHH-HHHHHHHTHH
T ss_pred hhhhc-chhhhhhhhhhhhhhhhhccccccccccchhHHHHHHHHHH--HHhccc-c---cHHHHHHHH-HHHHHHHHHH
Confidence 54444 44557899999999999999876543333222222221111 111111 1 111222221 2222333344
Q ss_pred ccccceeccccCccchhhhhhHHHHHHHHHHH-HHHHHHhHHHHHHcCcchhhHHHHHHHHHHHHHHHhhcc
Q 014616 316 GPVPWTLNSEVYPEQYRGICGGMSATVNWISN-LIVAQTFLTVAELVGTGATFLILAGIAVLAVVFVILFVP 386 (421)
Q Consensus 316 ~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 386 (421)
.+..+++..|.+|++.|+++.|+.++.+++++ +.++.+.+.+.+..|+...|+++++.++++.++...+.+
T Consensus 361 ~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~g~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 432 (447)
T d1pw4a_ 361 VMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMI 432 (447)
T ss_dssp HHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56667788999999999999999999888754 556778888899999888888888777776665555433
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.88 E-value=8.5e-23 Score=191.41 Aligned_cols=350 Identities=11% Similarity=0.034 Sum_probs=199.3
Q ss_pred chhhhHHHHhhhhhhhcccchhHHHHHHHHHHHHHHHHHHhcCChhHH----HHHHHHHHhhhhhhhhhHHHHHhhcCCC
Q 014616 2 ALVGAIVGAASGGWINDAYGRKKATLLADVVFTAGAIIMAAAPDPYVL----ILGRLLVGLGVGIASVTAPVYIAEASPS 77 (421)
Q Consensus 2 ~~ig~~~g~~~~g~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~s~~~l----~~~R~l~G~g~g~~~~~~~~~i~e~~p~ 77 (421)
..++.++++++.|+++||+|||+++.++.....++..+..+..+.... +..+.+.+.+.+...........+..++
T Consensus 52 ~~l~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (417)
T d1pv7a_ 52 ISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEK 131 (417)
T ss_dssp HHHHHHHTHHHHHHHHHHHTTCTHHHHHHHHHHHTHHHHHHHTHHHHHHTTCHHHHHHTTTTGGGGGTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcccccccchhhcccccccc
Confidence 357889999999999999999999999999999999998887766544 4555555555555555444444444333
Q ss_pred C--CccchhchHHHHHHHHHHHHHHHhhhcccCCccchHHHHhhHHHHH-HHHHHhhcCCcChHHHHhcCCHHHHHHHHH
Q 014616 78 E--VRGGLVSTNVLMITSGQFLSYLVNLAFTEVPGTWRWMLGVSAVPAI-IQFVLMLFMPESPRWLFMKSDKEKAILVLS 154 (421)
Q Consensus 78 ~--~rg~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~Wr~~f~~~~~~~l-~~~~~~~~~~esp~~~~~~~~~~~~~~~~~ 154 (421)
+ ++....+........+..+++.++...... +|++.+........ ...+..+..+|+|..... ++++
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~------ 201 (417)
T d1pv7a_ 132 VSRRSNFEFGRARMFGCVGWALGASIVGIMFTI--NNQFVFWLGSGCALILAVLLFFAKTDAPSSATV--ANAV------ 201 (417)
T ss_dssp HHHHHSCCHHHHHHHHHHHHHHHHHHHHHHHHH--CHHHHHHHHHHHHHHHHHHHHSSCCCSCSSSCS--SHHH------
T ss_pred hhhhhHHHHHHHhhhhccccccccccccccccc--cccccccchhhHHHHHHHHHHHHhcccccchhh--hhhh------
Confidence 2 233344444555556666666655544332 35655555554444 444555666776643210 0000
Q ss_pred HhcChhhhHHHHHHHHHHHHHHHhhcccccHHHhhcchhHHHHHHHHHHHHHHHhhcCcceehhchHHHHHHcCCCC---
Q 014616 155 KIYDIARLEDEIDHLSAAAEEELRKKKTVRYLDVFKSKEIRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQMAGFQS--- 231 (421)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~--- 231 (421)
+++.+..+.....+..+++..+............... .....+.+......+.
T Consensus 202 -------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~ 257 (417)
T d1pv7a_ 202 -------------------GANHSAFSLKLALELFRQPKLWFLSLYVIGVSCTYDV-----FDQQFANFFTSFFATGEQG 257 (417)
T ss_dssp -------------------HSCCCCCCHHHHHHHTTSSHHHHHHHHHHHHHHHHHH-----HHHHHHHHHTTSSSCHHHH
T ss_pred -------------------hhhcccccccccccccccccccchhhhhHHHHHHHHh-----hhccccccccccccccccc
Confidence 0000000011122223333322222211111111000 0011111111111111
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHhhHHHHHHHHHHHHHHhhCCCCCCCcchhHHHHHHHHHHHHHh
Q 014616 232 NQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLALYIAFF 311 (421)
Q Consensus 232 ~~~~~~~~~~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (421)
................++..+.+++.||.++|+....+.....++...+.. . .+ . +.......+ ..+.
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~----~--~~----~-~~~~~~~~l-~g~~ 325 (417)
T d1pv7a_ 258 TRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSF----A--TS----A-LEVVILKTL-HMFE 325 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHT----C--CC----H-HHHHHHHHH-HHHH
T ss_pred hhhhcccccccccccccchhhhhhhhcccccccchhhhHHHHHHhhhcccc----c--cc----c-chhhHHHHH-HHHH
Confidence 111222233334446778888899999999999877665554444433321 0 11 1 111111111 1122
Q ss_pred hcccccccceeccccCccchhhhhhHHHH-HHHHHHHHHHHHHhHHHHHHcCcchhhHHHHHHHHHHHHHHHhhccCCCC
Q 014616 312 APGMGPVPWTLNSEVYPEQYRGICGGMSA-TVNWISNLIVAQTFLTVAELVGTGATFLILAGIAVLAVVFVILFVPETQG 390 (421)
Q Consensus 312 ~~g~~~~~~~~~~e~~p~~~r~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~et~~ 390 (421)
.....+...++..|.+|++.|+++.++.. ....++..+++.+.+.+.|..|+...++++++++++..++..+.+++++.
T Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 405 (417)
T d1pv7a_ 326 VPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPGP 405 (417)
T ss_dssp HHHHHHHHHHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHSCCSSC
T ss_pred HHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHhhcCCCc
Confidence 22234566678899999999999998754 45678999999999999999999899999999998888888888888888
Q ss_pred CCHHHHH
Q 014616 391 LTFLEVE 397 (421)
Q Consensus 391 ~~~~~~~ 397 (421)
.++++.|
T Consensus 406 ~~~~r~~ 412 (417)
T d1pv7a_ 406 LSLLRRQ 412 (417)
T ss_dssp TTHHHHH
T ss_pred cchhHhh
Confidence 8775544
|
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=99.28 E-value=5.9e-12 Score=118.37 Aligned_cols=162 Identities=15% Similarity=0.093 Sum_probs=109.4
Q ss_pred chHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHhhHHHHHHHHHHHHHHhhCCCCCCCcchhH
Q 014616 219 YSPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGW 298 (421)
Q Consensus 219 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 298 (421)
..|. +++.|.+..+.+...+....+ ..++.++.|+++||+|||+.+..+.....++.++......... + +..
T Consensus 47 ~~p~-~~~~g~s~~~~g~~~s~~~~~-~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~--~----~~~ 118 (447)
T d1pw4a_ 47 AMPY-LVEQGFSRGDLGFALSGISIA-YGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATS--S----IAV 118 (447)
T ss_dssp HHHH-TTSSTTCSSCHHHHHHHHHHH-HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHS--S----SSH
T ss_pred HHHH-HHHhCcCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhhccccchhhh--h----HHH
Confidence 3454 356799999988877776554 6899999999999999999988777666665555443211111 0 111
Q ss_pred HHHHHHHHHHHHhhcccccccceeccccCccchhhhhhHHHHHHHHHHHHHHHHHhHHHHHHc-CcchhhHHHHHHHHHH
Q 014616 299 IAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELV-GTGATFLILAGIAVLA 377 (421)
Q Consensus 299 ~~~~~~~~~~~~~~~g~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~ 377 (421)
..... +...+......+....+..|.+|++.|+.+.++.++...++..+++.......+.. +|...+++.+...++.
T Consensus 119 ~~~~~--~~~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 196 (447)
T d1pw4a_ 119 MFVLL--FLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILV 196 (447)
T ss_dssp HHHHH--HHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHH
T ss_pred HHHHH--HHHHHhhhhhhhHHHHHHHHHHHhhcccccccccccccchhhhhhhhhhhhHhhhhhcccccchhhhhhHHHH
Confidence 11111 11111122233555677899999999999999999999999888887766655554 6778888888887777
Q ss_pred HHHHHhhccCCCC
Q 014616 378 VVFVILFVPETQG 390 (421)
Q Consensus 378 ~~~~~~~~~et~~ 390 (421)
.++.+.+.++++.
T Consensus 197 ~~~~~~~~~~~~~ 209 (447)
T d1pw4a_ 197 ALFAFAMMRDTPQ 209 (447)
T ss_dssp HHHHHHHCCCSST
T ss_pred HHHHHHhcccchh
Confidence 7766666665543
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.05 E-value=1.4e-10 Score=106.88 Aligned_cols=131 Identities=13% Similarity=0.033 Sum_probs=109.1
Q ss_pred hhhhHHHHhhhhhhhcccchhHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHhhhhhhhhhHHHHHhhcCCCCCccc
Q 014616 3 LVGAIVGAASGGWINDAYGRKKATLLADVVFTAGAIIMAAAPDPYVLILGRLLVGLGVGIASVTAPVYIAEASPSEVRGG 82 (421)
Q Consensus 3 ~ig~~~g~~~~g~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~s~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg~ 82 (421)
.++..++..+.+++.||+|||+++.++.++.+++.....+.++.+.+++.-++.|++.+...+....++.|..|+|+|+.
T Consensus 269 ~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (417)
T d1pv7a_ 269 ELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSAT 348 (417)
T ss_dssp HHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHH
T ss_pred ccccccchhhhhhhhcccccccchhhhHHHHHHhhhccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHCCHhHHHH
Confidence 45677888999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hhchH-HHHHHHHHHHHHHHhhhcccCCccchHHHHhhHHHHHHHHHH-hhcCC
Q 014616 83 LVSTN-VLMITSGQFLSYLVNLAFTEVPGTWRWMLGVSAVPAIIQFVL-MLFMP 134 (421)
Q Consensus 83 ~~~~~-~~~~~~g~~l~~~~~~~~~~~~~~Wr~~f~~~~~~~l~~~~~-~~~~~ 134 (421)
..+.. .....+|..+++.+.+.+.+.. +|++.|++.++..++..++ .+.++
T Consensus 349 ~~~~~~~~~~~~g~~i~~~~~G~l~~~~-g~~~~~~~~~~~~~~~~~~~~~~l~ 401 (417)
T d1pv7a_ 349 IYLVCFCFFKQLAMIFMSVLAGNMYESI-GFQGAYLVLGLVALGFTLISVFTLS 401 (417)
T ss_dssp HHHHHHTTTHHHHHHHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 87753 4455677777777766655444 4999998888777665544 33443
|