Citrus Sinensis ID: 014619

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-
MSGELDDDVEAEQTISINEYLNDVEEKELEADLVLGGDEGKECTYSKGYMKRQAIFSCLSCAPEGNAGVCTACSLTCHDGHEIVELWTKRNFRCDCGNSKFGEFFCKLFPSKDVENAENSYNHNFKGVYCTCNRPYPDPDVEEQVEMIQCCICEDWFHEEHIGLEPSDEIPRDDEGEPVYEDFICKACSAVCSFLSTYPQTIWAAGLRRNAGCNTNKDKDVLEEIPSAGGSGKLENGICSNGSPREDNAIANTSAESVTGGKGVTGESSKKIFDLVQCMNDGGAHIACLFGDNIVVDGSISLTKPLFLSKNWRATLCRCKKCLSMYEQKRVPYLIDEEDSIAEYERTAKQKREEKLQQQEGAELTFLNKLGHVEKMEILNGIADMKDEFHNFLQSFDPSKAITSDDVHQIFENLAKKRRRE
ccccccccccccccccHHHHHHHHHHHHHHHHHHccccccccccccccccccccEEEcccccccccccccccHHHHHccccccEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHccccccccccccccccccccccccccccccccccHHHHHHccccHHHHHHHHHccccccccccccHHHHccHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHcc
ccccccccccccccccHHHHHHHHHHHHHHHHHHccccccccccccccccccEEEEEEcccccccccEEEEEEEEEcccccEEEEEEEcccEEEcccccccccccEEEcccccccccccccccccccEEEEcccccccccccccccEEEEEEEcccccHHHcccccccccccccccccHHHHHHHHHHHcccHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEccccHHHHHcccHHHHHHHHHcccccccccccccccHHcccccccccccccccHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHccccEccHHHHHHHHHHHHHHHHcc
msgeldddveAEQTISINEYLNDVEEKELEADlvlggdegkectyskgymkRQAIFSClscapegnagvctacsltchdgHEIVELWtkrnfrcdcgnskfgeffcklfpskdvenaensynhnfkgvyctcnrpypdpdveEQVEMIQCCicedwfheehiglepsdeiprddegepvyeDFICKACSAVCSFLSTYPQTIWAAglrrnagcntnkdkdvleeipsaggsgklengicsngsprednaiantsaesvtggkgvtgesSKKIFDLVQCMNDGGAHIACLfgdnivvdgsisltkplflsknWRATLCRCkkclsmyeqkrvpylideedSIAEYERTAKQKREEKLQQQEGAELTFLNKLGHVEKMEILNGIADMKDEFHNflqsfdpskaitsddVHQIFENLAKKRRRE
msgeldddveaeQTISineylndveeKELEADLVLGGDEGKECTYSKGYMKRQAIFSCLSCAPEGNAGVCTACSLTCHDGHEIVELWTKRNFRCDCGNSKFGEFFCKLFPSKDVENAENSYNHNFKGVYCTCNRPYPDPDVEEQVEMIQCCICEDWFHEEHIGLEPSDEIPRDDEGEPVYEDFICKACSAVCSFLSTYPQTIWAAGLRRNAGCNTNKDKDVLeeipsaggsgklenGICSNGSPREDNAIAntsaesvtggkgvtgeSSKKIFDLVQCMNDGGAHIACLFGDNIVVDGSISLTKPLFLSKNWRATLCRCKKCLSMYEQkrvpylideedsIAEYERTAKQKREEKLQQQEGAELTFLNKLGHVEKMEILNGIADMKDEFHNFLQSFdpskaitsddvHQIFENLAKKRRRE
MSGELDDDVEAEQTISINEYLNDVEEKELEADLVLGGDEGKECTYSKGYMKRQAIFSCLSCAPEGNAGVCTACSLTCHDGHEIVELWTKRNFRCDCGNSKFGEFFCKLFPSKDVENAENSYNHNFKGVYCTCNRPYPDPDVEEQVEMIQCCICEDWFHEEHIGLEPSDEIPRDDEGEPVYEDFICKACSAVCSFLSTYPQTIWAAGLRRNAGCNTNKDKDVLEEIPSAGGSGKLENGICSNGSPREDNAIANTSAESVTGGKGVTGESSKKIFDLVQCMNDGGAHIACLFGDNIVVDGSISLTKPLFLSKNWRATLCRCKKCLSMYEQKRVPYLIDEEDSIAEYERTAkqkreeklqqqeGAELTFLNKLGHVEKMEILNGIADMKDEFHNFLQSFDPSKAITSDDVHQIFENLAKKRRRE
****************INEYLNDVEEKELEADLVLGGDEGKECTYSKGYMKRQAIFSCLSCAPEGNAGVCTACSLTCHDGHEIVELWTKRNFRCDCGNSKFGEFFCKLFPSKDVENAENSYNHNFKGVYCTCNRPYPDPDVEEQVEMIQCCICEDWFHEEHIGL*************PVYEDFICKACSAVCSFLSTYPQTIWAAGLRRNAGCN********************************************************KIFDLVQCMNDGGAHIACLFGDNIVVDGSISLTKPLFLSKNWRATLCRCKKCLSMYEQKRVPYLIDE**************************LTFLNKLGHVEKMEILNGIADMKDEFHNFLQSFD************************
*****************NEYLNDVEEKELEADLVLGGDEGKECTYSKGYMKRQAIFSCLSCAPEGNAGVCTACSLTCHDGHEIVELWTKRNFRCDCGNSKFGEFFCKLFPSKDVENAENSYNHNFKGVYCTCNRPYPDPDVEEQVEMIQCCICEDWFHEEHIGL**********EGEPVYEDFICKACSAVCSFLSTYPQTIWAAGLRRNAG*************************************************************************************GSISLTKPLFLSKNWRATLCRCKKCLSMYEQKRVPYLIDEED*******************************GHVEKMEILNGIADMKDEFHNFLQSFDPSKAITSDDVHQIF**********
**********AEQTISINEYLNDVEEKELEADLVLGGDEGKECTYSKGYMKRQAIFSCLSCAPEGNAGVCTACSLTCHDGHEIVELWTKRNFRCDCGNSKFGEFFCKLFPSKDVENAENSYNHNFKGVYCTCNRPYPDPDVEEQVEMIQCCICEDWFHEEHIGLEPSDEIPRDDEGEPVYEDFICKACSAVCSFLSTYPQTIWAAGLRRNAGCNTNKDKDVLEEIPSAGGSGKLENGICSNGSPREDNAIANTSAESVTGGKGVTGESSKKIFDLVQCMNDGGAHIACLFGDNIVVDGSISLTKPLFLSKNWRATLCRCKKCLSMYEQKRVPYLIDEEDSIAEYERTAKQKREEKLQQQEGAELTFLNKLGHVEKMEILNGIADMKDEFHNFLQSFDPSKAITSDDVHQIFENLAKKRRRE
**************ISINEYLNDVEEKELEADLVLGGDEGKECTYSKGYMKRQAIFSCLSCAPEGNAGVCTACSLTCHDGHEIVELWTKRNFRCDCGNSKFGEFFCKLFPSKDVENAENSYNHNFKGVYCTCNRPYPDPDVEEQVEMIQCCICEDWFHEEHIGLEPSDEI**DDEGEPVYEDFICKACSAVCSFLSTYPQTIWAAG***********************************************************************************************LTKPLFLSKNWRATLCRCKKCLSMYEQKRVPYLIDEEDSIAEYERT************EGAELTFLNKLGHVEKMEILNGIADMKDEFHNFLQSFDPSKAITSDDVHQIFENLAKK****
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MSGELDDDVEAEQTISINEYLNDVEEKELEADLVLGGDEGKECTYSKGYMKRQAIFSCLSCAPEGNAGVCTACSLTCHDGHEIVELWTKRNFRCDCGNSKFGEFFCKLFPSKDVENAENSYNHNFKGVYCTCNRPYPDPDVEEQVEMIQCCICEDWFHEEHIGLEPSDEIPRDDEGEPVYEDFICKACSAVCSFLSTYPQTIWAAGLRRNAGCNTNKDKDVLEEIPSAGGSGKLENGICSNGSPREDNAIANTSAESVTGGKGVTGESSKKIFDLVQCMNDGGAHIACLFGDNIVVDGSISLTKPLFLSKNWRATLCRCKKCLSMYEQKRVPYxxxxxxxxxxxxxxxxxxxxxxxxxxxxAELTFLNKLGHVEKMEILNGIADMKDEFHNFLQSFDPSKAITSDDVHQIFENLAKKRRRE
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query421 2.2.26 [Sep-21-2011]
Q8BU04425 Putative E3 ubiquitin-pro yes no 0.869 0.861 0.360 4e-62
Q8N806425 Putative E3 ubiquitin-pro yes no 0.850 0.842 0.341 8e-62
Q09329329 Protein mlo2 OS=Schizosac yes no 0.349 0.446 0.418 3e-27
Q54DV0465 Putative E3 ubiquitin-pro yes no 0.410 0.372 0.334 7e-23
>sp|Q8BU04|UBR7_MOUSE Putative E3 ubiquitin-protein ligase UBR7 OS=Mus musculus GN=Ubr7 PE=2 SV=1 Back     alignment and function desciption
 Score =  238 bits (608), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 147/408 (36%), Positives = 218/408 (53%), Gaps = 42/408 (10%)

Query: 30  EADLVLGGDEGKECTYSKGYMKRQAIFSCLSCAPEGN--AGVCTACSLTCHDGHEIVELW 87
           EA  VLGG + ++C+YS+G + RQA+++C +C PEG   AG+C ACS  CH  H++ EL+
Sbjct: 33  EACAVLGGSDSEKCSYSQGSVGRQALYACSTCTPEGEEPAGICLACSYECHGSHKLFELY 92

Query: 88  TKRNFRCDCGNSKFGEFFCKLFPSKDVENAENSYNHNFKGVYCTCNRPYPDPDVEEQVEM 147
           TKRNFRCDCGNSKF    CKLFP K   N+ N YN NF G+YC C RPYPDP+ E   EM
Sbjct: 93  TKRNFRCDCGNSKFKNLECKLFPDKSKVNSCNKYNDNFFGLYCVCKRPYPDPEDEVPDEM 152

Query: 148 IQCCICEDWFHEEHIGLEPSDEIPRDDEGEPVYEDFICKACSAVCSFLSTYPQTIWAAGL 207
           IQC +CEDWFH  H+G  P       + G+  +++ +C+AC   CSFL  Y     AA L
Sbjct: 153 IQCVVCEDWFHGRHLGAIPP------ESGD--FQEMVCQACMRRCSFLWAY-----AAQL 199

Query: 208 RRNAGCNTNKDKDVLEEIPSAGGSGKLENGICSNGSPREDNAIANTSAESVTGGKGVTGE 267
              A    + + D L  +P+A G G  +     NG+P +DN +   + E    G+    E
Sbjct: 200 ---AVTRISAEDDGL--LPNATGMGDEDVSKPENGAP-QDNGLKEDAPEH---GRDSVNE 250

Query: 268 SSKKIFDLVQCMNDGGAHIACLF-GDNIVVDGSIS-----LTKPLFLSK--------NWR 313
              +  +     +   + +  +F  +NI  +   S     L    F+ K        NWR
Sbjct: 251 VKAEQKNEPCSSSSSESDLQTVFKKENIKTEPQSSCRLQELQAKQFVKKDAATYWPLNWR 310

Query: 314 ATLCRCKKCLSMYEQKRVPYLIDEEDSIAEYERTAKQKREEKLQQQEGAELTFLNKLGHV 373
           + LC C+ C+ MY +  V +L DE D++  YE   K    ++   +    +  L+ +  V
Sbjct: 311 SKLCTCQDCMKMYGELDVLFLTDECDTVLAYENKGKN---DQATDRRDPLMDTLSSMNRV 367

Query: 374 EKMEILNGIADMKDEFHNFLQSF-DPSKAITSDDVHQIFENLAKKRRR 420
           +++E++    D+K E  ++L+ F D    +  +D+ Q FE    K+RR
Sbjct: 368 QQVELICEYNDLKTELKDYLKRFADEGTVVKREDIQQFFEEFQSKKRR 415
E3 ubiquitin-protein ligase which is a component of the N-end rule pathway. Recognizes and binds to proteins bearing specific N-terminal residues that are destabilizing according to the N-end rule, leading to their ubiquitination and subsequent degradation.
Mus musculus (taxid: 10090)
EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: -
>sp|Q8N806|UBR7_HUMAN Putative E3 ubiquitin-protein ligase UBR7 OS=Homo sapiens GN=UBR7 PE=1 SV=2 Back     alignment and function description
>sp|Q09329|MLO2_SCHPO Protein mlo2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=mlo2 PE=2 SV=1 Back     alignment and function description
>sp|Q54DV0|UBR7_DICDI Putative E3 ubiquitin-protein ligase ubr7 OS=Dictyostelium discoideum GN=ubr7 PE=3 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query421
255537791420 protein binding protein, putative [Ricin 0.990 0.992 0.703 1e-172
224072194415 predicted protein [Populus trichocarpa] 0.973 0.987 0.697 1e-171
224058276425 predicted protein [Populus trichocarpa] 0.992 0.983 0.694 1e-171
225426344416 PREDICTED: putative E3 ubiquitin-protein 0.964 0.975 0.682 1e-164
356539290420 PREDICTED: putative E3 ubiquitin-protein 0.985 0.988 0.647 1e-152
363806676420 uncharacterized protein LOC100817441 [Gl 0.988 0.990 0.649 1e-152
449452234413 PREDICTED: putative E3 ubiquitin-protein 0.964 0.983 0.646 1e-151
357481401417 PHD finger-related protein [Medicago tru 0.973 0.983 0.637 1e-149
388491610417 unknown [Medicago truncatula] 0.973 0.983 0.632 1e-148
226506712412 uncharacterized protein LOC100274433 [Ze 0.942 0.963 0.558 1e-132
>gi|255537791|ref|XP_002509962.1| protein binding protein, putative [Ricinus communis] gi|223549861|gb|EEF51349.1| protein binding protein, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  609 bits (1570), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 296/421 (70%), Positives = 338/421 (80%), Gaps = 4/421 (0%)

Query: 1   MSGELDDDVEAEQTISINEYLNDVEEKELEADLVLGGDEGKECTYSKGYMKRQAIFSCLS 60
           M G  +DD   EQ+I+I+EYLN VE +ELEADLVLGGDEGKECTY+ GYMKRQAIFSCL+
Sbjct: 1   MDGAFEDD--NEQSITIDEYLNKVEAEELEADLVLGGDEGKECTYTTGYMKRQAIFSCLT 58

Query: 61  CAPEGNAGVCTACSLTCHDGHEIVELWTKRNFRCDCGNSKFGEFFCKLFPSKDVENAENS 120
           C P+GNAGVCTACSL+CHDGHEIVELWTKRNFRCDCGNSKFGE FCKLFP KD+EN +NS
Sbjct: 59  CTPDGNAGVCTACSLSCHDGHEIVELWTKRNFRCDCGNSKFGENFCKLFPQKDLENGKNS 118

Query: 121 YNHNFKGVYCTCNRPYPDPDVEEQVEMIQCCICEDWFHEEHIGLEPSDEIPRDDEGEPVY 180
           YNHNFKG YC+C RPYPDPDVEEQ EMIQC +CEDWFHEEH+GLE SDEIPRD+EGEP+Y
Sbjct: 119 YNHNFKGSYCSCGRPYPDPDVEEQEEMIQCIMCEDWFHEEHLGLESSDEIPRDEEGEPLY 178

Query: 181 EDFICKACSAVCSFLSTYPQTIWAAGLRR-NAGCNTNKDKDVLEEIPSAGGSGKLENGIC 239
           EDFICK CSA CSFL+ YPQTIWAAG +  +   NT+KDK+VLE+IPSA GSGKLEN  C
Sbjct: 179 EDFICKTCSATCSFLTLYPQTIWAAGGQSGDVTANTSKDKNVLEDIPSACGSGKLENDAC 238

Query: 240 SNGSPREDNAIANTSAESVTGGKGVTGESSKKIFDLVQCMNDGGAHIACLFGDNIVVDGS 299
           S+GS  +  A AN  + SV     + GESS+K  D  Q   D      C+ G + V    
Sbjct: 239 SHGSGEDIMANANCGSISV-AKTSLIGESSEKNIDSNQSTKDANLQTPCVLGVDTVATFP 297

Query: 300 ISLTKPLFLSKNWRATLCRCKKCLSMYEQKRVPYLIDEEDSIAEYERTAKQKREEKLQQQ 359
           +  +KPLFL+KNWR TLCRC KCL MY Q    Y +D+EDSIAEYE+ AK+KREEKLQ+Q
Sbjct: 298 VLESKPLFLAKNWRDTLCRCDKCLDMYSQNHASYFLDKEDSIAEYEKMAKEKREEKLQKQ 357

Query: 360 EGAELTFLNKLGHVEKMEILNGIADMKDEFHNFLQSFDPSKAITSDDVHQIFENLAKKRR 419
           EGAEL+F NKLGH+EKMEIL+GIAD K+EF  FL+SFD SK ITS DVHQIFENLAKKRR
Sbjct: 358 EGAELSFFNKLGHIEKMEILSGIADFKEEFRTFLESFDTSKTITSSDVHQIFENLAKKRR 417

Query: 420 R 420
           R
Sbjct: 418 R 418

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224072194|ref|XP_002303646.1| predicted protein [Populus trichocarpa] gi|118483763|gb|ABK93774.1| unknown [Populus trichocarpa] gi|222841078|gb|EEE78625.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224058276|ref|XP_002299475.1| predicted protein [Populus trichocarpa] gi|222846733|gb|EEE84280.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225426344|ref|XP_002270160.1| PREDICTED: putative E3 ubiquitin-protein ligase UBR7 [Vitis vinifera] gi|297742333|emb|CBI34482.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356539290|ref|XP_003538132.1| PREDICTED: putative E3 ubiquitin-protein ligase UBR7 [Glycine max] Back     alignment and taxonomy information
>gi|363806676|ref|NP_001242007.1| uncharacterized protein LOC100817441 [Glycine max] gi|255636057|gb|ACU18373.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|449452234|ref|XP_004143865.1| PREDICTED: putative E3 ubiquitin-protein ligase UBR7-like [Cucumis sativus] gi|449501781|ref|XP_004161456.1| PREDICTED: putative E3 ubiquitin-protein ligase UBR7-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|357481401|ref|XP_003610986.1| PHD finger-related protein [Medicago truncatula] gi|355512321|gb|AES93944.1| PHD finger-related protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|388491610|gb|AFK33871.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|226506712|ref|NP_001142264.1| uncharacterized protein LOC100274433 [Zea mays] gi|194707900|gb|ACF88034.1| unknown [Zea mays] gi|413943922|gb|AFW76571.1| hypothetical protein ZEAMMB73_927257 [Zea mays] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query421
TAIR|locus:2138151452 AT4G23860 [Arabidopsis thalian 0.624 0.581 0.595 1.7e-122
UNIPROTKB|F1SD54425 UBR7 "Uncharacterized protein" 0.928 0.92 0.372 1.3e-68
ZFIN|ZDB-GENE-030131-1535410 ubr7 "ubiquitin protein ligase 0.479 0.492 0.448 2.3e-68
UNIPROTKB|F1PKX8425 UBR7 "Uncharacterized protein" 0.938 0.929 0.361 1.1e-66
UNIPROTKB|A3KMX6425 UBR7 "Uncharacterized protein" 0.935 0.927 0.363 1.3e-66
RGD|1359144425 Ubr7 "ubiquitin protein ligase 0.938 0.929 0.352 1.5e-65
UNIPROTKB|Q8N806425 UBR7 "Putative E3 ubiquitin-pr 0.921 0.912 0.353 1.8e-64
MGI|MGI:1913872425 Ubr7 "ubiquitin protein ligase 0.942 0.934 0.342 2.3e-64
UNIPROTKB|F1NJU8362 UBR7 "Uncharacterized protein" 0.342 0.397 0.525 7.8e-60
FB|FBgn0032635404 CG15141 [Drosophila melanogast 0.446 0.465 0.448 2.3e-56
TAIR|locus:2138151 AT4G23860 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 906 (324.0 bits), Expect = 1.7e-122, Sum P(2) = 1.7e-122
 Identities = 165/277 (59%), Positives = 206/277 (74%)

Query:     2 SGELDDDVEAEQTISINEYLNDVEEKELEADLVLGGDEGKECTYSKGYMKRQAIFSCLSC 61
             SG  +D  EAE TI+INEY+  ++ +EL ADLVLGGDEG ECT+ KGYMKRQAIFSC++C
Sbjct:     3 SGVFED--EAEGTITINEYIERLDAEELAADLVLGGDEGDECTFPKGYMKRQAIFSCITC 60

Query:    62 APEGNAGVCTACSLTCHDGHEIVELWTKRNFRCDCGNSKFGEFFCKLFPSKDVENAENSY 121
              PEGNAG+CTAC L+CHDGHE++ELWTKRNFRCDCGNSKFG   CKL PSKD+EN+ENSY
Sbjct:    61 TPEGNAGICTACCLSCHDGHELLELWTKRNFRCDCGNSKFGTLACKLLPSKDIENSENSY 120

Query:   122 NHNFKGVYCTCNRPYPDPDVEEQVEMIQCCICEDWFHEEHIGLEPSD----EIPRDDEGE 177
             NHNFKG+YCTC+RPYPDP+VEEQVEMIQCC+CEDWFHEEH+GL PSD    +IPRD+E E
Sbjct:   121 NHNFKGLYCTCDRPYPDPNVEEQVEMIQCCLCEDWFHEEHLGLTPSDSVGSQIPRDEESE 180

Query:   178 PVYEDFICKACSAVCSFLSTYPQTIWAAGLRRNAGCNTNKDKDVLEEIPSAGGSGKLENG 237
             P+YEDFIC+ CS  CSFL+ YP+ +W      + G + N   + +E   +   S   E G
Sbjct:   181 PIYEDFICQNCSPACSFLTLYPENLWVVAKVDSTG-SANACSETIELDKNHMDS---EPG 236

Query:   238 ICSNGSPREDNAIANTSAESVTG---GKGVTGESSKK 271
                NG+  E + +   S E+++    G+   G  ++K
Sbjct:   237 QPENGTDAEKSVVGKCS-ETISDSEPGQPENGTEAEK 272
GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA
GO:0005634 "nucleus" evidence=ISM
GO:0008270 "zinc ion binding" evidence=IEA
GO:0005737 "cytoplasm" evidence=IDA
GO:0006261 "DNA-dependent DNA replication" evidence=RCA
UNIPROTKB|F1SD54 UBR7 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030131-1535 ubr7 "ubiquitin protein ligase E3 component n-recognin 7" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|F1PKX8 UBR7 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|A3KMX6 UBR7 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
RGD|1359144 Ubr7 "ubiquitin protein ligase E3 component n-recognin 7 (putative)" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q8N806 UBR7 "Putative E3 ubiquitin-protein ligase UBR7" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:1913872 Ubr7 "ubiquitin protein ligase E3 component n-recognin 7 (putative)" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|F1NJU8 UBR7 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
FB|FBgn0032635 CG15141 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q8N806UBR7_HUMAN6, ., 3, ., 2, ., -0.34130.85030.8423yesno
Q8BU04UBR7_MOUSE6, ., 3, ., 2, ., -0.36020.86930.8611yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query421
pfam0220771 pfam02207, zf-UBR, Putative zinc finger in N-recog 4e-17
smart0039671 smart00396, ZnF_UBR1, Putative zinc finger in N-re 7e-09
>gnl|CDD|216929 pfam02207, zf-UBR, Putative zinc finger in N-recognin (UBR box) Back     alignment and domain information 
 Score = 75.1 bits (185), Expect = 4e-17
 Identities = 27/73 (36%), Positives = 41/73 (56%), Gaps = 5/73 (6%)

Query: 41  KECTYSKGYMKRQAIFSCLSCAPEGNAGVCTAC-SLTCHDGHEIVELWTKRNFRCDCGNS 99
             C Y       Q ++ CL+C+ +    +C  C S++CH GH++VEL++KR   CDCG+ 
Sbjct: 1   SVCGYVFK--SGQPVYRCLTCSLDPTCVICYECFSISCHKGHDVVELFSKRGGCCDCGDP 58

Query: 100 KF--GEFFCKLFP 110
           +    E FCKL  
Sbjct: 59  EAWKKEGFCKLHK 71

This region is found in E3 ubiquitin ligases that recognise N-recognins. Length = 71
>gnl|CDD|197698 smart00396, ZnF_UBR1, Putative zinc finger in N-recognin, a recognition component of the N-end rule pathway Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 421
KOG2752345 consensus Uncharacterized conserved protein, conta 100.0
PF0220771 zf-UBR: Putative zinc finger in N-recognin (UBR bo 99.37
smart0039671 ZnF_UBR1 Putative zinc finger in N-recognin, a rec 99.29
KOG1777625 consensus Putative Zn-finger protein [General func 98.71
PF0062851 PHD: PHD-finger; InterPro: IPR019787 Zinc finger ( 98.39
KOG2752345 consensus Uncharacterized conserved protein, conta 98.38
KOG1973274 consensus Chromatin remodeling protein, contains P 98.35
smart0024947 PHD PHD zinc finger. The plant homeodomain (PHD) f 98.26
COG5034271 TNG2 Chromatin remodeling protein, contains PhD zi 98.04
KOG17761110 consensus Zn-binding protein Push [Signal transduc 97.51
KOG4323464 consensus Polycomb-like PHD Zn-finger protein [Gen 97.43
KOG1632345 consensus Uncharacterized PHD Zn-finger protein [G 97.1
KOG0943 3015 consensus Predicted ubiquitin-protein ligase/hyper 96.99
KOG4443 694 consensus Putative transcription factor HALR/MLL3, 89.65
PF0064342 zf-B_box: B-box zinc finger; InterPro: IPR000315 Z 87.35
KOG0825 1134 consensus PHD Zn-finger protein [General function 86.09
KOG1844 508 consensus PHD Zn-finger proteins [General function 85.99
PF1383136 PHD_2: PHD-finger; PDB: 2L43_A 2KU3_A. 84.41
>KOG2752 consensus Uncharacterized conserved protein, contains N-recognin-type Zn-finger [General function prediction only] Back     alignment and domain information 
Probab=100.00  E-value=1.5e-90  Score=672.64  Aligned_cols=338  Identities=43%  Similarity=0.822  Sum_probs=271.5

Q ss_pred             CCCCCccchhccCccHHHHHHhHHHHHHHHHHhcCCCCCCCcccccccccccceEeecCCCCC-CCceEeccchhhhcCC
Q 014619            2 SGELDDDVEAEQTISINEYLNDVEEKELEADLVLGGDEGKECTYSKGYMKRQAIFSCLSCAPE-GNAGVCTACSLTCHDG   80 (421)
Q Consensus         2 ~~~~~~~~e~e~~vT~~d~le~q~eLE~eA~~vl~~~~~~~Cty~~g~~~rQ~~y~C~tC~~~-~~~gvC~~Cs~~CH~~   80 (421)
                      +|-|++ +|...+||+.+|++++.+||.+|++|||++++++|||++||++||++|+|+||+|. +.+||||+|++.||+|
T Consensus         3 ~~~~e~-ee~~~tiT~~e~vE~~~~lE~~a~~vL~~~~~~~CTy~~Gy~~rQ~l~sClTC~P~~~~agvC~~C~~~CH~~   81 (345)
T KOG2752|consen    3 DGVEET-EEIAPTITLGEYVEQIDELEDEADVVLGTQNPDVCTYAKGYKKRQALFSCLTCTPAPEMAGVCYACSLSCHDG   81 (345)
T ss_pred             cchhcc-hhccccccHHHHHHhHHHHHHHHHhhcCCCCCcccccccCcccccceeEeecccCChhhceeEEEeeeeecCC
Confidence            455555 34445999999999999999999999999999999999999999999999999998 4899999999999999


Q ss_pred             CceeEeecccceeeccCCCCCCCcceeecCCCCCCCccCcCCCCCCcceEEeCCCCCCCCcccccceeeccccCceeccc
Q 014619           81 HEIVELWTKRNFRCDCGNSKFGEFFCKLFPSKDVENAENSYNHNFKGVYCTCNRPYPDPDVEEQVEMIQCCICEDWFHEE  160 (421)
Q Consensus        81 H~l~el~~kr~f~CDCG~~~~~~~~C~l~~~k~~~n~~N~Yn~Nf~g~yC~C~rpypdp~~e~~~~MiQC~~CEDWfH~~  160 (421)
                      |+||||||||||||||||++|+..+|+|.+.|+.+|++|.|||||+|+||+|.+|||||..++.+.|+||.+||||||  
T Consensus        82 H~lveL~tKR~FrCDCg~sk~g~~sc~l~~~~~~~n~~N~YNhNfqG~~C~Cd~~Ypdp~~~~e~~m~QC~iCEDWFH--  159 (345)
T KOG2752|consen   82 HELVELYTKRNFRCDCGNSKFGRCSCNLLEDKDAENSENLYNHNFQGLFCKCDTPYPDPVRTEEGEMLQCVICEDWFH--  159 (345)
T ss_pred             ceeeeccccCCcccccccccccccccccccccccccchhhhhhhhcceeEEecCCCCCccccccceeeeEEeccchhc--
Confidence            999999999999999999999999999999999999999999999999999999999999888999999999999999  


Q ss_pred             CCCCCCCCCCCCCCCCCCccCeeeccCccCCCcccccccccccccccccCCCcccCCCCCccccCCCCCCCCCCCCCCCC
Q 014619          161 HIGLEPSDEIPRDDEGEPVYEDFICKACSAVCSFLSTYPQTIWAAGLRRNAGCNTNKDKDVLEEIPSAGGSGKLENGICS  240 (421)
Q Consensus       161 Clgl~~~~~~p~~~~~~~~~~~fiC~~C~~~~~fL~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (421)
                                              |..|++..+|+..|+.....    ....           ..+.+++.    +...+
T Consensus       160 ------------------------ce~c~~~~~~~~~yp~~~~~----D~e~-----------~k~e~~se----~~a~~  196 (345)
T KOG2752|consen  160 ------------------------CEGCMQAKTFLEDYPEQGKD----DAEE-----------VKPEQNSE----KCAGS  196 (345)
T ss_pred             ------------------------ccccCcccchhhcccccccc----cccc-----------CCccccCc----ccccc
Confidence                                    44566677888888732110    0000           00000000    00000


Q ss_pred             CCCCCccccccccccccccCCCCccCCCcccccccccccCCCCCCcccccCCCcc---cCCCCCCCcceecCcchhhhcc
Q 014619          241 NGSPREDNAIANTSAESVTGGKGVTGESSKKIFDLVQCMNDGGAHIACLFGDNIV---VDGSISLTKPLFLSKNWRATLC  317 (421)
Q Consensus       241 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ckl~~~~~---~~~~~~~~~~~fl~~~wR~~LC  317 (421)
                      ..          +.-+++    .     +.     .+ .-...+++.|++. .+.   .......++.||.. +||+.||
T Consensus       197 ~c----------~~~i~~----~-----~~-----~e-~~~~e~~~~~~~~-~~e~~~k~~~~~d~~~~~~~-~wR~~LC  249 (345)
T KOG2752|consen  197 SC----------SEDIQD----V-----PK-----NE-SLNDESESGCKLQ-LLENFRKQLKKKDGAAFWTN-NWRSKLC  249 (345)
T ss_pred             cc----------HHHHHh----c-----cc-----CC-CCccccccCCcHH-HHHhhHhhcccCCcccchhh-hHHHhhc
Confidence            00          000000    0     00     00 0011223456665 221   11122466778877 9999999


Q ss_pred             cchhhhhhhhhcCCCcccCCCcchHHhhhhhHhhhhhhhhhhhchHHHHHhhCChHHHHHHHHHHHHHHHHHHHhhhhc-
Q 014619          318 RCKKCLSMYEQKRVPYLIDEEDSIAEYERTAKQKREEKLQQQEGAELTFLNKLGHVEKMEILNGIADMKDEFHNFLQSF-  396 (421)
Q Consensus       318 ~C~~C~~~y~~~~~~FLldeeDtv~~YE~~~~~~~~~s~~~d~g~~~~aL~sl~RvqaIE~i~gYn~mKdkL~~fLk~F-  396 (421)
                      +|.+|+.||+.+.|.||||+||||.+||.+++...+.+ +.+.+|+  +|++|+|||||++|.+||+||++|++||++| 
T Consensus       250 ~Ce~Cl~mY~d~dv~fLlD~EDti~tyE~k~k~~~~~~-t~e~~~~--~L~~l~r~q~ve~i~eyn~lK~~L~d~L~~fA  326 (345)
T KOG2752|consen  250 TCEDCLEMYEDLDVEFLLDEEDTILTYENKGKIAEENK-TSEDLME--ALDSLNRVQQVELICEYNRLKDELKDYLKRFA  326 (345)
T ss_pred             chHHhhhhhhhhchheeecccchhhhhhhhhhhhhhcc-ccchHHH--HHHhccchhhHHHHHHHHhHHHHHHHHHHHhh
Confidence            99999999999999999999999999999999656655 8888999  9999999999999999999999999999999 


Q ss_pred             CCCCccCHHHHHHHHHHHH
Q 014619          397 DPSKAITSDDVHQIFENLA  415 (421)
Q Consensus       397 e~gkvVt~EDIk~FFe~l~  415 (421)
                      ++|+|||+|||++||++++
T Consensus       327 ~~~~vv~reDI~~FF~~~~  345 (345)
T KOG2752|consen  327 DEGTVVTREDIQQFFEEFQ  345 (345)
T ss_pred             hcCeEeeHHHHHHHHHhhC
Confidence            9999999999999999874

>PF02207 zf-UBR: Putative zinc finger in N-recognin (UBR box); InterPro: IPR003126 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>smart00396 ZnF_UBR1 Putative zinc finger in N-recognin, a recognition component of the N-end rule pathway Back     alignment and domain information
>KOG1777 consensus Putative Zn-finger protein [General function prediction only] Back     alignment and domain information
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>KOG2752 consensus Uncharacterized conserved protein, contains N-recognin-type Zn-finger [General function prediction only] Back     alignment and domain information
>KOG1973 consensus Chromatin remodeling protein, contains PHD Zn-finger [Chromatin structure and dynamics] Back     alignment and domain information
>smart00249 PHD PHD zinc finger Back     alignment and domain information
>COG5034 TNG2 Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics] Back     alignment and domain information
>KOG1776 consensus Zn-binding protein Push [Signal transduction mechanisms] Back     alignment and domain information
>KOG4323 consensus Polycomb-like PHD Zn-finger protein [General function prediction only] Back     alignment and domain information
>KOG1632 consensus Uncharacterized PHD Zn-finger protein [General function prediction only] Back     alignment and domain information
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG4443 consensus Putative transcription factor HALR/MLL3, involved in embryonic development [General function prediction only] Back     alignment and domain information
>PF00643 zf-B_box: B-box zinc finger; InterPro: IPR000315 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>KOG0825 consensus PHD Zn-finger protein [General function prediction only] Back     alignment and domain information
>KOG1844 consensus PHD Zn-finger proteins [General function prediction only] Back     alignment and domain information
>PF13831 PHD_2: PHD-finger; PDB: 2L43_A 2KU3_A Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query421
1wep_A79 PHF8; structural genomics, PHD domain, riken struc 4e-09
1wem_A76 Death associated transcription factor 1; structura 1e-06
3pur_A 528 Lysine-specific demethylase 7 homolog; oxidoreduct 3e-06
3kqi_A75 GRC5, PHD finger protein 2; metal-binding, zinc-fi 7e-06
3o7a_A52 PHD finger protein 13 variant; PHF13, zinc finger, 9e-06
3o70_A68 PHD finger protein 13; PHF13, structural genomics 2e-05
1wee_A72 PHD finger family protein; structural genomics, PH 6e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-05
3kv4_A 447 PHD finger protein 8; epigenetics, histone CODE, c 1e-04
3ny3_A75 E3 ubiquitin-protein ligase UBR2; zinc finger-like 2e-04
2kgg_A52 Histone demethylase jarid1A; PHD finger, histone m 3e-04
3lqh_A183 Histone-lysine N-methyltransferase MLL; PHD finger 3e-04
3kv5_D 488 JMJC domain-containing histone demethylation prote 4e-04
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2 Length = 79 Back     alignment and structure
 Score = 52.2 bits (125), Expect = 4e-09
 Identities = 21/77 (27%), Positives = 31/77 (40%), Gaps = 13/77 (16%)

Query: 117 AENSYNHNFKGVYCTCNRPYPDPDVEEQVEMIQCCICEDWFHEEHIGLEPSDEIPRDDEG 176
           +  S       VYC C +PY          MI+C +C+DWFH   +G+E  +        
Sbjct: 2   SSGSSGMALVPVYCLCRQPY-----NVNHFMIECGLCQDWFHGSCVGIEEEN-------- 48

Query: 177 EPVYEDFICKACSAVCS 193
               + + C  C AV  
Sbjct: 49  AVDIDIYHCPDCEAVFG 65
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2 Length = 76 Back     alignment and structure
>3pur_A Lysine-specific demethylase 7 homolog; oxidoreductase-oxidoreductase inhibitor complex; HET: 2HG; 2.10A {Caenorhabditis elegans} PDB: 3n9l_A 3n9m_A* 3n9o_A* 3n9p_A* 3n9q_A* 3n9n_A* 3puq_A* Length = 528 Back     alignment and structure
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} Length = 75 Back     alignment and structure
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens} Length = 52 Back     alignment and structure
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens} Length = 68 Back     alignment and structure
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2 Length = 72 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens} Length = 447 Back     alignment and structure
>3ny3_A E3 ubiquitin-protein ligase UBR2; zinc finger-like, ubiquitin ligase, protein binding, lygase,; 1.60A {Homo sapiens} PDB: 3ny2_A 3ny1_A Length = 75 Back     alignment and structure
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A* Length = 52 Back     alignment and structure
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A Length = 183 Back     alignment and structure
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A* Length = 488 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query421
3o70_A68 PHD finger protein 13; PHF13, structural genomics 99.57
1wep_A79 PHF8; structural genomics, PHD domain, riken struc 99.51
1we9_A64 PHD finger family protein; structural genomics, PH 99.4
3kqi_A75 GRC5, PHD finger protein 2; metal-binding, zinc-fi 99.37
1wem_A76 Death associated transcription factor 1; structura 99.33
3o7a_A52 PHD finger protein 13 variant; PHF13, zinc finger, 99.3
1wee_A72 PHD finger family protein; structural genomics, PH 99.2
3lqh_A183 Histone-lysine N-methyltransferase MLL; PHD finger 99.12
2kgg_A52 Histone demethylase jarid1A; PHD finger, histone m 99.1
3kv5_D 488 JMJC domain-containing histone demethylation prote 99.09
1wew_A78 DNA-binding family protein; structural genomics, P 99.06
2rsd_A68 E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant 99.02
3c6w_A59 P28ING5, inhibitor of growth protein 5; chromatin, 98.97
2g6q_A62 Inhibitor of growth protein 2; protein-peptide com 98.95
1wen_A71 Inhibitor of growth family, member 4; ING1-like pr 98.94
3kv4_A 447 PHD finger protein 8; epigenetics, histone CODE, c 98.91
1weu_A91 Inhibitor of growth family, member 4; structural g 98.91
2vnf_A60 ING 4, P29ING4, inhibitor of growth protein 4; ace 98.87
1x4i_A70 Inhibitor of growth protein 3; structural genomics 98.86
2ri7_A174 Nucleosome-remodeling factor subunit BPTF; zinc fi 98.86
2k16_A75 Transcription initiation factor TFIID subunit 3; p 98.84
2xb1_A105 Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; 98.79
2jmi_A90 Protein YNG1, ING1 homolog 1; PHD, histone, recogn 98.76
2vpb_A65 Hpygo1, pygopus homolog 1; gene regulation, WNT si 98.76
2lv9_A98 Histone-lysine N-methyltransferase MLL5; zinc fing 98.73
3rsn_A177 SET1/ASH2 histone methyltransferase complex subun; 98.42
3pur_A 528 Lysine-specific demethylase 7 homolog; oxidoreduct 98.37
2ku7_A140 MLL1 PHD3-CYP33 RRM chimeric protein; transcriptio 97.99
4bbq_A117 Lysine-specific demethylase 2A; oxidoreductase, ub 97.69
1f62_A51 Transcription factor WSTF; Zn-finger; NMR {Homo sa 97.53
2e6r_A92 Jumonji/ARID domain-containing protein 1D; PHD dom 97.36
2puy_A60 PHD finger protein 21A; PHD finger, histone CODE, 97.22
3ny3_A75 E3 ubiquitin-protein ligase UBR2; zinc finger-like 97.06
3asl_A70 E3 ubiquitin-protein ligase UHRF1; histone reader 96.94
1mm2_A61 MI2-beta; PHD, zinc finger, protein scaffold, DNA 96.92
2l43_A88 N-teminal domain from histone H3.3, linker, PHD1 f 96.9
2l5u_A61 Chromodomain-helicase-DNA-binding protein 4; CHD4, 96.83
2ku3_A71 Bromodomain-containing protein 1; PHD finger, chro 96.59
2yql_A56 PHD finger protein 21A; PHD domain, structural gen 96.56
2e6s_A77 E3 ubiquitin-protein ligase UHRF2; PHD domain, str 96.42
1xwh_A66 Autoimmune regulator; PHD domain, Zn binding domai 96.38
2yt5_A66 Metal-response element-binding transcription facto 96.37
3shb_A77 E3 ubiquitin-protein ligase UHRF1; unmodified hist 96.25
3u5n_A207 E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, b 96.17
4gne_A107 Histone-lysine N-methyltransferase NSD3; zinc fing 96.16
3o36_A184 Transcription intermediary factor 1-alpha; TRIM24, 96.07
3nis_A82 E3 ubiquitin-protein ligase UBR1; E3 ubiquitin lig 96.06
2lri_C66 Autoimmune regulator; Zn binding protein domain, a 95.88
2kwj_A114 Zinc finger protein DPF3; acetyl-lysine, transcrip 95.35
2ysm_A111 Myeloid/lymphoid or mixed-lineage leukemia protein 95.28
3ask_A226 E3 ubiquitin-protein ligase UHRF1; histone reader 95.16
1fp0_A88 KAP-1 corepressor; PHD domain, C3HC4 type zinc bin 95.1
1wev_A88 Riken cDNA 1110020M19; structural genomics, PHD do 95.05
3v43_A112 Histone acetyltransferase KAT6A; MOZ, PHD finger, 94.99
2ro1_A189 Transcription intermediary factor 1-beta; KAP, TIF 93.33
2ysm_A111 Myeloid/lymphoid or mixed-lineage leukemia protein 88.19
3v43_A112 Histone acetyltransferase KAT6A; MOZ, PHD finger, 81.2
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens} Back     alignment and structure
Probab=99.57  E-value=5.7e-16  Score=121.48  Aligned_cols=62  Identities=24%  Similarity=0.491  Sum_probs=45.9

Q ss_pred             CCCccCcCCCCCCcceEEeCCCCCCCCcccccceeeccccCceecccCCCCCCCCCCCCCCCCCCccCeeeccCccCC
Q 014619          114 VENAENSYNHNFKGVYCTCNRPYPDPDVEEQVEMIQCCICEDWFHEEHIGLEPSDEIPRDDEGEPVYEDFICKACSAV  191 (421)
Q Consensus       114 ~~n~~N~Yn~Nf~g~yC~C~rpypdp~~e~~~~MiQC~~CEDWfH~~Clgl~~~~~~p~~~~~~~~~~~fiC~~C~~~  191 (421)
                      .++++|.||+++.++||+|+++|+      .++||||+.|++|||..|||++..   +   .    .+.|+|+.|...
T Consensus         6 ~~~~~~~~~~~~~~~~CiC~~~~~------~~~MIqCd~C~~WfH~~Cvgi~~~---~---~----~~~~~C~~C~~s   67 (68)
T 3o70_A            6 HHSSGRENLYFQGLVTCFCMKPFA------GRPMIECNECHTWIHLSCAKIRKS---N---V----PEVFVCQKCRDS   67 (68)
T ss_dssp             --------CTTTTCCCSTTCCCCT------TCCEEECTTTCCEEETTTTTCCTT---S---C----CSSCCCHHHHTC
T ss_pred             cCCcccccCCCCCceEeECCCcCC------CCCEEECCCCCccccccccCcCcc---c---C----CCcEECCCCCCC
Confidence            467899999999999999999973      478999999999999999999652   1   1    358999999753
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2 Back     alignment and structure
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2 Back     alignment and structure
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2 Back     alignment and structure
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2 Back     alignment and structure
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens} Back     alignment and structure
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2 Back     alignment and structure
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A Back     alignment and structure
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A* Back     alignment and structure
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A* Back     alignment and structure
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2 Back     alignment and structure
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group} Back     alignment and structure
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A* Back     alignment and structure
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus} Back     alignment and structure
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A Back     alignment and structure
>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens} Back     alignment and structure
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2 Back     alignment and structure
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A* Back     alignment and structure
>1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A* Back     alignment and structure
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A* Back     alignment and structure
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens} Back     alignment and structure
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A* Back     alignment and structure
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A* Back     alignment and structure
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens} Back     alignment and structure
>3rsn_A SET1/ASH2 histone methyltransferase complex subun; PHD domain, winged helix domain, binding, transcription; 2.10A {Homo sapiens} PDB: 3s32_A Back     alignment and structure
>3pur_A Lysine-specific demethylase 7 homolog; oxidoreductase-oxidoreductase inhibitor complex; HET: 2HG; 2.10A {Caenorhabditis elegans} PDB: 3n9l_A 3n9m_A* 3n9o_A* 3n9p_A* 3n9q_A* 3n9n_A* 3puq_A* Back     alignment and structure
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens} Back     alignment and structure
>4bbq_A Lysine-specific demethylase 2A; oxidoreductase, ubiquitin, ligase, ubiquitination, demethyla ZF-CXXC DNA binding domain, CPG island, chromatin; 2.24A {Homo sapiens} Back     alignment and structure
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2 Back     alignment and structure
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens} Back     alignment and structure
>3ny3_A E3 ubiquitin-protein ligase UBR2; zinc finger-like, ubiquitin ligase, protein binding, lygase,; 1.60A {Homo sapiens} PDB: 3ny2_A 3ny1_A Back     alignment and structure
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B Back     alignment and structure
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A Back     alignment and structure
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens} Back     alignment and structure
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens} Back     alignment and structure
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens} Back     alignment and structure
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A Back     alignment and structure
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus} Back     alignment and structure
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens} Back     alignment and structure
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A* Back     alignment and structure
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A* Back     alignment and structure
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A Back     alignment and structure
>3nis_A E3 ubiquitin-protein ligase UBR1; E3 ubiquitin ligase, UBR BOX, zinc-binding protein, N-END RU ligase, metal binding protein; 1.68A {Saccharomyces cerevisiae} PDB: 3nii_A 3nij_A 3nih_A 3nik_A 3nim_A 3nin_A 3nil_A 3nit_A Back     alignment and structure
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens} Back     alignment and structure
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A* Back     alignment and structure
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens} Back     alignment and structure
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens} Back     alignment and structure
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2 Back     alignment and structure
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2 Back     alignment and structure
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A Back     alignment and structure
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens} Back     alignment and structure
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens} Back     alignment and structure
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 421
d1wepa_79 g.50.1.2 (A:) PHD finger protein 8 {Mouse (Mus mus 9e-07
d1wema_76 g.50.1.2 (A:) Death associated transcription facto 1e-06
d1weea_72 g.50.1.2 (A:) PHD finger protein At1g33420 {Thale 2e-05
d1wewa_78 g.50.1.2 (A:) Sumoylation ligase E3, SIZ1 {Thale c 0.001
d1we9a_64 g.50.1.2 (A:) PHD finger protein At5g26210 {Thale 0.004
>d1wepa_ g.50.1.2 (A:) PHD finger protein 8 {Mouse (Mus musculus) [TaxId: 10090]} Length = 79 Back     information, alignment and structure

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: PHD finger protein 8
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 44.3 bits (104), Expect = 9e-07
 Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 13/63 (20%)

Query: 128 VYCTCNRPYPDPDVEEQVEMIQCCICEDWFHEEHIGLEPSDEIPRDDEGEPVYEDFICKA 187
           VYC C +PY          MI+C +C+DWFH   +G+E  +            + + C  
Sbjct: 13  VYCLCRQPYNVNH-----FMIECGLCQDWFHGSCVGIEEEN--------AVDIDIYHCPD 59

Query: 188 CSA 190
           C A
Sbjct: 60  CEA 62
>d1wema_ g.50.1.2 (A:) Death associated transcription factor 1, Datf1 (DIO-1) {Mouse (Mus musculus) [TaxId: 10090]} Length = 76 Back     information, alignment and structure
>d1weea_ g.50.1.2 (A:) PHD finger protein At1g33420 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 72 Back     information, alignment and structure
>d1wewa_ g.50.1.2 (A:) Sumoylation ligase E3, SIZ1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 78 Back     information, alignment and structure
>d1we9a_ g.50.1.2 (A:) PHD finger protein At5g26210 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 64 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query421
d1wepa_79 PHD finger protein 8 {Mouse (Mus musculus) [TaxId: 99.13
d2pnxa151 Inhibitor of growth protein 4, Ing4 {Homo sapiens 98.91
d1wewa_78 Sumoylation ligase E3, SIZ1 {Thale cress (Arabidop 98.84
d1weea_72 PHD finger protein At1g33420 {Thale cress (Arabido 98.83
d1wema_76 Death associated transcription factor 1, Datf1 (DI 98.83
d1we9a_64 PHD finger protein At5g26210 {Thale cress (Arabido 98.68
d1wesa_71 PHD Inhibitor of growth protein 2, Ing2 {Mouse (Mu 98.61
d1weva_88 PHD finger protein 22 {Mouse (Mus musculus) [TaxId 98.1
d1mm2a_61 Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606 98.1
d1f62a_51 Williams-Beuren syndrome transcription factor, WST 98.04
d1fp0a170 Nuclear corepressor KAP-1 (TIF-1beta) {Human (Homo 97.56
>d1wepa_ g.50.1.2 (A:) PHD finger protein 8 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: PHD finger protein 8
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.13  E-value=2e-12  Score=101.86  Aligned_cols=54  Identities=37%  Similarity=0.935  Sum_probs=42.8

Q ss_pred             CcceEEeCCCCCCCCcccccceeeccccCceecccCCCCCCCCCCCCCCCCCCccCeeeccCccCCC
Q 014619          126 KGVYCTCNRPYPDPDVEEQVEMIQCCICEDWFHEEHIGLEPSDEIPRDDEGEPVYEDFICKACSAVC  192 (421)
Q Consensus       126 ~g~yC~C~rpypdp~~e~~~~MiQC~~CEDWfH~~Clgl~~~~~~p~~~~~~~~~~~fiC~~C~~~~  192 (421)
                      ..+||+|+++| |+    .+.||||+.|+.|||..|+++...    ....    .+.|+|+.|..+.
T Consensus        11 ~pv~CiC~~~~-~~----~~~mI~Cd~C~~W~H~~C~g~~~~----~~~~----~~~~~C~~C~~~~   64 (79)
T d1wepa_          11 VPVYCLCRQPY-NV----NHFMIECGLCQDWFHGSCVGIEEE----NAVD----IDIYHCPDCEAVF   64 (79)
T ss_dssp             CCCCSTTSCSC-CS----SSCEEEBTTTCCEEEHHHHTCCHH----HHTT----CSBBCCTTTTTTS
T ss_pred             CCeEeECCCcc-CC----CCcEEECCCCCCcEeccccCcchh----cCCC----CCEEECccCcCCc
Confidence            46899999998 34    468999999999999999999542    1122    5679999998654
>d2pnxa1 g.50.1.2 (A:195-245) Inhibitor of growth protein 4, Ing4 {Homo sapiens [TaxId: 9606]} Back     information, alignment and structure
>d1wewa_ g.50.1.2 (A:) Sumoylation ligase E3, SIZ1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1weea_ g.50.1.2 (A:) PHD finger protein At1g33420 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1wema_ g.50.1.2 (A:) Death associated transcription factor 1, Datf1 (DIO-1) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1we9a_ g.50.1.2 (A:) PHD finger protein At5g26210 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1wesa_ g.50.1.2 (A:) PHD Inhibitor of growth protein 2, Ing2 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1weva_ g.50.1.2 (A:) PHD finger protein 22 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1mm2a_ g.50.1.2 (A:) Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1f62a_ g.50.1.2 (A:) Williams-Beuren syndrome transcription factor, WSTF {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1fp0a1 g.50.1.2 (A:19-88) Nuclear corepressor KAP-1 (TIF-1beta) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure