Citrus Sinensis ID: 014628

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-
Protein Sequence
MVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFFLAAGIWFVGIFLKSIDKFNEDGENQISLDSKANMKPLLEGNGDNL
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHcccccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccEHHHHcHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHcccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHcccHHEEEEccHHHHHHHHHHHHHccccccccccccccccccccccccccHHHHHcccccccHcHHHHHHcccccccccccccccHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHEHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHcccccc
Coil and Loop (DISEMBL)
MVGLLVASPIFAslakshnpfrliGVGLSVWTFatagcgssfdFWSIAICRMLVGVGEasfislaapfiddnapvpqktAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIkplqlkgfapaesgkAQVVASVSegseasnlndhvsedisdqasERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGaysywgpkagyniyhmsnadmmFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLvfatqapvnyVCLHSVKPSLRALSMAISTVSIhifgdvpssplvgvlQDHVNNWRKTTLALTSIFFLAAGIWFVGIFLKSIDKfnedgenqisldskanmkpllegngdnl
Flexible Loop (DISEMBL)
MVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEgseasnlndhvsedisdqaSERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFFLAAGIWFVGIFLKSIDKFNEDGENqisldskanmkpllegngdnl
Low Complexity Region (SEG)
MVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTgvalgyvyggvvgSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQvvasvsegseasNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADMMFggvtivcgivgtisggFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFFLAAGIWFVGIFLKSIDKFNEDGENQISLDSKANMKPLLEGNGDNL
Disordered region (IsUnstruct)
***LLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFA*************************************************QLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFFLAAGIWFVGIFLKSIDKF***************************
Disordered Region (DISOPRED)
MVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFFLAAGIWFVGIFLKSIDK****************************
Disordered Region (DISEMBL)
MVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVS*********RSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFFLAAGIWFVGIFLKSIDKFNEDGENQISLDSKANMKPLLEGNGDNL
Disordered Region (DISPRO)
MVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQ*******************EGSEASNLNDHVSEDISDQASERS******SRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFFLAAGIWFVGIFLKSIDKFN**************************
Transmembrane Helix (TMHMM)
oooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFFLAAGIWFVGIFLKSIDKFNEDGENQISLDSKANMKPLLEGNGDNL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	421	2.2.26 [Sep-21-2011]
Q9FLG8	484	Probable sphingolipid tra	yes	no	0.912	0.793	0.679	1e-158
F4IKF6	510	Probable sphingolipid tra	no	no	0.916	0.756	0.676	1e-154
Q6NMN6	492	Probable sphingolipid tra	no	no	0.900	0.770	0.603	1e-137
Q5XGK0	526	Protein spinster homolog	N/A	no	0.750	0.600	0.286	2e-24
A8WGF7	526	Protein spinster homolog	yes	no	0.750	0.600	0.278	3e-23
Q8IVW8	549	Protein spinster homolog	yes	no	0.831	0.637	0.237	6e-21
A2SWM2	504	Protein spinster homolog	yes	no	0.833	0.696	0.244	5e-20
Q91VM4	549	Protein spinster homolog	yes	no	0.831	0.637	0.232	1e-19
Q9GQQ0	605	Protein spinster OS=Droso	yes	no	0.748	0.520	0.265	2e-19
Q9D232	514	Protein spinster homolog	no	no	0.855	0.700	0.261	7e-19

>sp|Q9FLG8|SPNS2_ARATH Probable sphingolipid transporter spinster homolog 2 OS=Arabidopsis thaliana GN=At5g64500 PE=2 SV=1

 Score =  558 bits (1439), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 282/415 (67%), Positives = 320/415 (77%), Gaps = 31/415 (7%)

Query: 1   MVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEAS 60
           MVGLLVASPIFASLAKS NPFRLIGVGLS+WT A  GCG SFDFWSI ICRM VGVGEAS
Sbjct: 99  MVGLLVASPIFASLAKSVNPFRLIGVGLSIWTLAVIGCGLSFDFWSITICRMFVGVGEAS 158

Query: 61  FISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILM 120
           F+SLAAPFIDDNAP  QK+AWL++FYMCIPTG A GYVYGGVVGS L WR AFWGEAILM
Sbjct: 159 FVSLAAPFIDDNAPHDQKSAWLAVFYMCIPTGYAFGYVYGGVVGSVLPWRAAFWGEAILM 218

Query: 121 LPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKS 180
           LPFAVL FVIKPL LKGFAP ++GK +            NLN               +  
Sbjct: 219 LPFAVLGFVIKPLHLKGFAPDDTGKPR----------TDNLN---------------VLP 253

Query: 181 IGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNA 240
           +G        S   +D K+LL +KVYV N+LGYIAYNFV+GAYSYWGPKAGYNIY M NA
Sbjct: 254 VGYG-----FSAVMKDLKLLLVDKVYVTNILGYIAYNFVLGAYSYWGPKAGYNIYKMENA 308

Query: 241 DMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGF 300
           DM+FGGVT+VCGIVGT+SGG ILD M ATISNAFK+LS +TF+GAI C  AFC  S+Y F
Sbjct: 309 DMIFGGVTVVCGIVGTLSGGVILDYMDATISNAFKVLSVSTFIGAIFCFAAFCFKSMYAF 368

Query: 301 LALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDH 360
           LALF VGELLVFATQ PVN++ LH VKPSLR L+MA+STVSIHIFGDVPSSPLVGVLQD+
Sbjct: 369 LALFAVGELLVFATQGPVNFIVLHCVKPSLRPLAMAMSTVSIHIFGDVPSSPLVGVLQDY 428

Query: 361 VNNWRKTTLALTSIFFLAAGIWFVGIFLKSIDKFNEDGENQISLDSKANMKPLLE 415
           VNNWR T+L LT + F AA IW +GIFL S+D++NED E   ++  ++   PLL+
Sbjct: 429 VNNWRVTSLVLTFVLFPAAAIWSIGIFLNSVDRYNEDSEPD-AVTRESTAAPLLQ 482

Probable sphingolipid transporter that plays a central role in endosomes and/or lysosomes storage.
Arabidopsis thaliana (taxid: 3702)

>sp|F4IKF6|SPNS3_ARATH Probable sphingolipid transporter spinster homolog 3 OS=Arabidopsis thaliana GN=At2g22730 PE=3 SV=1

 Score =  543 bits (1400), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 274/405 (67%), Positives = 315/405 (77%), Gaps = 19/405 (4%)

Query: 1   MVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEAS 60
           MVGLL+ASPIFASLAK     RLIGVGL+VWT A  GCGSSF FW I +CRM VGVGEAS
Sbjct: 112 MVGLLIASPIFASLAK-----RLIGVGLTVWTIAVLGCGSSFAFWFIVLCRMFVGVGEAS 166

Query: 61  FISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILM 120
           FISLAAPFIDDNAP  QK AWL +FYMCIP+GVALGYVYGG VG H +WRYAFWGEA+LM
Sbjct: 167 FISLAAPFIDDNAPQEQKAAWLGLFYMCIPSGVALGYVYGGYVGKHFSWRYAFWGEAVLM 226

Query: 121 LPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKS 180
            PFAVL F++KPLQLKG            +   + +    +++ +  D  + + E S  S
Sbjct: 227 APFAVLGFLMKPLQLKG------------SETLKNNNRLQVDNEIEHDQFEVSIETSKSS 274

Query: 181 IGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNA 240
              + F    + F++D KVL +EKV+VVNVLGY++YNFVIGAYSYWGPKAGYNIY M NA
Sbjct: 275 YANAVF-KSFTGFAKDMKVLYKEKVFVVNVLGYVSYNFVIGAYSYWGPKAGYNIYKMKNA 333

Query: 241 DMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGF 300
           DM+FG VTI+CGIVGT+SGGFILD++ ATI NAFKLLS ATFLGA+ C TAF L SLYGF
Sbjct: 334 DMIFGAVTIICGIVGTLSGGFILDRVTATIPNAFKLLSGATFLGAVFCFTAFTLKSLYGF 393

Query: 301 LALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDH 360
           +ALF +GELLVFATQAPVNYVCLH VKPSLR LSMAISTV+IHIFGDVPSSPLVG++QDH
Sbjct: 394 IALFALGELLVFATQAPVNYVCLHCVKPSLRPLSMAISTVAIHIFGDVPSSPLVGIVQDH 453

Query: 361 VNNWRKTTLALTSIFFLAAGIWFVG-IFLKSIDKFNEDGENQISL 404
           +N+WRKTTL LTSI FLAA IWF+G I L S    +E    QI L
Sbjct: 454 INSWRKTTLILTSILFLAAAIWFIGKINLNSFYSNDESFLVQIKL 498

Probable sphingolipid transporter.

Arabidopsis thaliana (taxid: 3702)

>sp|Q6NMN6|SPNS1_ARATH Probable sphingolipid transporter spinster homolog 1 OS=Arabidopsis thaliana GN=At5g65687 PE=1 SV=1

 Score =  487 bits (1254), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 239/396 (60%), Positives = 296/396 (74%), Gaps = 17/396 (4%)

Query: 1   MVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEAS 60
           MVGLLVASPIFA L+K  NPF+LIGVGL+VWT A  GCG S++FW IA+ RM VGVGEAS
Sbjct: 90  MVGLLVASPIFAGLSKRFNPFKLIGVGLTVWTIAVIGCGFSYNFWMIAVFRMFVGVGEAS 149

Query: 61  FISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILM 120
           FISLAAP+IDD+APV +K  WL +FYMCIP GVALGYV+GG +G+HL WR+AF+ EAI M
Sbjct: 150 FISLAAPYIDDSAPVARKNFWLGLFYMCIPAGVALGYVFGGYIGNHLGWRWAFYIEAIAM 209

Query: 121 LPFAVLAFVIKP-LQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIK 179
             F +L+F IKP  QLKGFA  +S K          ++A           + Q   ++ K
Sbjct: 210 AVFVILSFCIKPPQQLKGFADKDSKKPSTSIETVAPTDAE----------ASQIKTKTPK 259

Query: 180 SIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSN 239
           S       N +  F +D K L  EKV++VNVLGYI YNFVIGAYSYWGPKAG+ IY M N
Sbjct: 260 S------KNLVVLFGKDLKALFSEKVFIVNVLGYITYNFVIGAYSYWGPKAGFGIYKMKN 313

Query: 240 ADMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYG 299
           ADM+FGG+TI+CGI+GT+ G ++LD++ AT+SN FKLL+A+T LGA  C TAF + ++Y 
Sbjct: 314 ADMIFGGLTIICGIIGTLGGSYVLDRINATLSNTFKLLAASTLLGAAFCFTAFLMKNMYA 373

Query: 300 FLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQD 359
           F+ALF VGE+L+FA QAPVN+VCLH V+P+LR LSMA STV IHI GDVPSSPL G +QD
Sbjct: 374 FIALFAVGEILIFAPQAPVNFVCLHCVRPNLRPLSMASSTVLIHILGDVPSSPLYGKMQD 433

Query: 360 HVNNWRKTTLALTSIFFLAAGIWFVGIFLKSIDKFN 395
           H+ NWRK+TL +TSI FLAA IW +GIF+ S+D+ N
Sbjct: 434 HLKNWRKSTLIITSILFLAAIIWGIGIFMNSVDRSN 469

Probable sphingolipid transporter that plays a central role in endosomes and/or lysosomes storage.

Arabidopsis thaliana (taxid: 3702)

>sp|Q5XGK0|SPNS1_XENLA Protein spinster homolog 1 OS=Xenopus laevis GN=spns1 PE=2 SV=1

 Score =  114 bits (284), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 107/374 (28%), Positives = 162/374 (43%), Gaps = 58/374 (15%)

Query: 8   SPIFASLAKSHNPFRLIGVGLSVWTFAT--AGCGSSFDFWSIAICRMLVGVGEASFISLA 65
           +P+F  L   +N   ++ VG+S W+  T  +   S+  FW   I R LVGVGEAS+ ++A
Sbjct: 112 APVFGYLGDRYNRKLIMCVGISFWSLVTLLSSFVSNQYFWLFLITRGLVGVGEASYSTIA 171

Query: 66  APFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAV 125
              I D     Q+T  LS FY   P G  LGY+    VGS +      W  A+ + P   
Sbjct: 172 PTIIADLFLADQRTRMLSFFYFATPVGCGLGYI----VGSEMTSAAGDWHWALRVTPGLG 227

Query: 126 LAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESR 185
           L  V+  +                               V+E+    A ER        R
Sbjct: 228 LLAVLLLI------------------------------FVAEEPPRGALERK-----TDR 252

Query: 186 FLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGP----KAGYNIYH----- 236
            L   S +S D K LL+   ++++  G+    FV GA + WGP    ++   IY      
Sbjct: 253 PLTNTS-WSSDMKALLKNPSFILSTFGFTTVAFVTGALALWGPTYLMRSRMVIYKSKPCE 311

Query: 237 --MSNAD--MMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCL--- 289
             + N D  M+FGG+T + GI+G ++G  I  +   T   A  L+ A   + +   L   
Sbjct: 312 GGICNYDDSMIFGGITCITGILGVLTGVEISKRYRKTNPRADPLVCAVGMISSAPFLFLS 371

Query: 290 TAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVP 349
            AF  +SL        +GE L+    A V  + L+ V P+ R+ + A+  V  H+ GD  
Sbjct: 372 LAFADTSLVATYVFIFIGETLLSLNWALVADILLYVVIPTRRSTAEALQIVVSHLLGDAG 431

Query: 350 SSPLVGVLQDHVNN 363
           S  L+GV+ D +  
Sbjct: 432 SPYLIGVISDQIQK 445

Sphingolipid transporter.

Xenopus laevis (taxid: 8355)

>sp|A8WGF7|SPNS1_XENTR Protein spinster homolog 1 OS=Xenopus tropicalis GN=spns1 PE=2 SV=2

 Score =  109 bits (273), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 104/374 (27%), Positives = 161/374 (43%), Gaps = 58/374 (15%)

Query: 8   SPIFASLAKSHNPFRLIGVGLSVWTFAT--AGCGSSFDFWSIAICRMLVGVGEASFISLA 65
           +P+F  L   +N   ++ +G+S W+  T  +   S   FW   + R LVGVGEAS+ ++A
Sbjct: 112 APVFGYLGDRYNRKLIMCIGISFWSLVTLLSSFVSKQYFWLFLLTRGLVGVGEASYSTIA 171

Query: 66  APFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAV 125
              I D     Q++  LS FY   P G  LGY+     GS +      W  A+ + P   
Sbjct: 172 PTIIADLFLADQRSRMLSFFYFATPVGCGLGYI----AGSKVTSTAGDWHWALRVTPGLG 227

Query: 126 LAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESR 185
           L  V+  +                               V+++    A ER        R
Sbjct: 228 LVAVLLLI------------------------------FVAKEPPRGALERK-----SDR 252

Query: 186 FLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGP----KAGYNIYH----- 236
            L   S FS D K LL+   ++++  G+    FV GA + WGP    ++   IY      
Sbjct: 253 PLTNTSWFS-DVKALLKNPSFILSTFGFTTVAFVTGALALWGPTYLMRSRRVIYKTEPCQ 311

Query: 237 --MSNAD--MMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCL--- 289
             + N D  M+FGG+T V G++G ++G  I  +   T   A  L+ A   + +   L   
Sbjct: 312 GGICNYDDSMIFGGITCVTGVLGVLTGVEISKRYRKTNPRADPLVCAVGMISSAPFLYLS 371

Query: 290 TAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVP 349
            AF  +SL    A   +GE L+    A V  + L+ V P+ R+ + A+  V  H+ GD  
Sbjct: 372 LAFADTSLVATYAFIFIGETLLSLNWALVADILLYVVIPTRRSTAEALQIVVSHLLGDAG 431

Query: 350 SSPLVGVLQDHVNN 363
           S  L+GV+ D +  
Sbjct: 432 SPYLIGVISDQIQK 445

Sphingolipid transporter.

Xenopus tropicalis (taxid: 8364)

>sp|Q8IVW8|SPNS2_HUMAN Protein spinster homolog 2 OS=Homo sapiens GN=SPNS2 PE=1 SV=2

 Score =  102 bits (254), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 102/430 (23%), Positives = 173/430 (40%), Gaps = 80/430 (18%)

Query: 5   LVASPIFASLAKSHNPFRLIGVGLSVW---TFATAGCGSSFDFWSIAICRMLVGVGEASF 61
           +VA+PIF  L    N   ++  G+  W   TF+++     + FW + + R LVG+GEAS+
Sbjct: 152 MVAAPIFGYLGDRFNRKVILSCGIFFWSAVTFSSSFIPQQY-FWLLVLSRGLVGIGEASY 210

Query: 62  ISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHL-NWRYAFWGEAILM 120
            ++A   I D      +T  LS+FY  IP G  LGY+ G  V     +W +A     +L 
Sbjct: 211 STIAPTIIGDLFTKNTRTLMLSVFYFAIPLGSGLGYITGSSVKQAAGDWHWALRVSPVLG 270

Query: 121 LPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKS 180
           +    L  ++ P   +G A                           + + DQ   R    
Sbjct: 271 MITGTLILILVPATKRGHA---------------------------DQLGDQLKAR---- 299

Query: 181 IGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGP------KAGYNI 234
                     + + +D K L++ + YV + L   A +F  GA   W P      +     
Sbjct: 300 ----------TSWLRDMKALIRNRSYVFSSLATSAVSFATGALGMWIPLYLHRAQVVQKT 349

Query: 235 YHMSNA-------DMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGA-- 285
               N+        ++FG +T   G +G ++G             A  L+ A   LG+  
Sbjct: 350 AETCNSPPCGAKDSLIFGAITCFTGFLGVVTGAGATRWCRLKTQRADPLVCAVGMLGSAI 409

Query: 286 -ISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHI 344
            I  +     SS+ G      VGE L+F+  A    + ++ V P+ RA ++A+ + + H+
Sbjct: 410 FICLIFVAAKSSIVGAYICIFVGETLLFSNWAITADILMYVVIPTRRATAVALQSFTSHL 469

Query: 345 FGDVPSSPLVGVLQDHVNNWRKTT------------------LALTSIFFLAAGIWFVGI 386
            GD  S  L+G + D +    K +                  + L  +FFLA  ++FV  
Sbjct: 470 LGDAGSPYLIGFISDLIRQSTKDSPLWEFLSLGYALMLCPFVVVLGGMFFLATALFFVSD 529

Query: 387 FLKSIDKFNE 396
             ++  + N+
Sbjct: 530 RARAEQQVNQ 539

Sphingolipid transporter required for migration of myocardial precursors. Transports sphingosine 1-phosphate (S1P), a secreted lipid mediator that plays critical roles in cardiovascular, immunological, and neural development and function. Mediates the export of S1P from cells in the extraembryonic yolk syncytial layer (YSL), thereby regulating myocardial precursor migration.

Homo sapiens (taxid: 9606)

>sp|A2SWM2|SPNS2_DANRE Protein spinster homolog 2 OS=Danio rerio GN=spns2 PE=1 SV=2

 Score = 99.4 bits (246), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 107/437 (24%), Positives = 174/437 (39%), Gaps = 86/437 (19%)

Query: 1   MVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSF----DFWSIAICRMLVGV 56
           +   +VA+PIF  L    N   ++  G+  W+  T    SSF     +W + + R LVG+
Sbjct: 101 ICSFMVAAPIFGYLGDRFNRKIILSCGIFFWSAVTLL--SSFITKEYYWLLVLSRCLVGI 158

Query: 57  GEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGV---VGSHLNWRYAF 113
           GE+S+ S++   I D     ++T  LS+FY+ IP G  LGY+ G +    G H  W +A 
Sbjct: 159 GESSYSSISPTIIGDLFTNNKRTVMLSVFYLAIPLGSGLGYILGSIAKDAGGH--WYWAL 216

Query: 114 WGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQA 173
               +L L    L  +                      VSE    S          +DQ 
Sbjct: 217 RVSPMLGLTAGTLILIF---------------------VSEPKRGS----------ADQP 245

Query: 174 SERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPK---- 229
             R          L   + +  D K L + + YV + L   A +F  GA+  W P+    
Sbjct: 246 GGR----------LKTRTSWVCDMKALAKNRSYVFSSLASAAVSFATGAFGIWIPQYLVR 295

Query: 230 -------AGYNIYH--MSNADMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAA 280
                  A    Y    S   ++FG +T V G++G + G             A  L+ A 
Sbjct: 296 AQVVQKSAESCTYQPCSSRDSLIFGAITCVTGLLGVVIGAVTTRLCRQKTERADPLVCAV 355

Query: 281 TFLGA---ISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAI 337
           + LG+   I  +      S+ G      +GE L+F   A    + ++ V P+ RA ++A 
Sbjct: 356 SMLGSAIFICLIFVVAKKSIVGAYICIFIGETLLFLNWAITADILMYVVIPTRRATAVAF 415

Query: 338 STVSIHIFGDVPSSPLVGVLQDHVNNWRKTT------------------LALTSIFFLAA 379
              + H+ GD  S  L+G++ D +     T+                  + L  +FFLA 
Sbjct: 416 QGFTSHLLGDAGSPYLIGLISDSLQESYATSEIWQFLSLGYALMLCPFVIVLGGMFFLAT 475

Query: 380 GIWFVGIFLKSIDKFNE 396
            ++F+    K+  + N+
Sbjct: 476 ALFFLDDRDKAAKQVNQ 492

Sphingolipid transporter required for migration of myocardial precursors. Transports sphingosine 1-phosphate (S1P), a secreted lipid mediator that plays critical roles in cardiovascular, immunological, and neural development and function. Mediates the export of S1P from cells in the extraembryonic yolk syncytial layer (YSL), thereby regulating myocardial precursor migration.

Danio rerio (taxid: 7955)

>sp|Q91VM4|SPNS2_MOUSE Protein spinster homolog 2 OS=Mus musculus GN=Spns2 PE=2 SV=2

 Score = 98.2 bits (243), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 100/430 (23%), Positives = 171/430 (39%), Gaps = 80/430 (18%)

Query: 5   LVASPIFASLAKSHNPFRLIGVGLSVW---TFATAGCGSSFDFWSIAICRMLVGVGEASF 61
           +VA+PIF  L    N   ++  G+  W   TF+++     + FW + + R LVG+GEAS+
Sbjct: 152 MVAAPIFGYLGDRFNRKVILSCGIFFWSAVTFSSSFIPQQY-FWLLVLSRGLVGIGEASY 210

Query: 62  ISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHL-NWRYAFWGEAILM 120
            ++A   I D      +T  LS+FY  IP G  LGY+ G  V     +W +A     +L 
Sbjct: 211 STIAPTIIGDLFTKNTRTLMLSVFYFAIPLGSGLGYITGSSVKQAAGDWHWALRVSPVLG 270

Query: 121 LPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKS 180
           +    L  ++ P   +G A    G+                                   
Sbjct: 271 MITGTLILILVPATKRGHADQLGGQ----------------------------------- 295

Query: 181 IGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGP------KAGYNI 234
                 L   + + +D K L++ + YV + L   A +F  GA   W P      +     
Sbjct: 296 ------LKARTSWLRDMKALIRNRSYVFSSLATSAVSFATGALGMWIPLYLHRAQVVQKT 349

Query: 235 YHMSNA-------DMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGA-- 285
               N+        ++FG +T   G +G ++G             A  L+ A   LG+  
Sbjct: 350 AETCNSPPCGAKDSLIFGAITCFTGFLGVVTGAGATRWCRLRTQRADPLVCAVGMLGSAI 409

Query: 286 -ISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHI 344
            I  +     +S+ G      VGE L+F+  A    + ++ V P+ RA ++A+ + + H+
Sbjct: 410 FICLIFVAAKTSIVGAYICIFVGETLLFSNWAITADILMYVVIPTRRATAVALQSFTSHL 469

Query: 345 FGDVPSSPLVGVLQDHVNNWRKTT------------------LALTSIFFLAAGIWFVGI 386
            GD  S  L+G + D +    K +                  + L  +FFLA  ++F+  
Sbjct: 470 LGDAGSPYLIGFISDLIRQSTKDSPLWEFLSLGYALMLCPFVVVLGGMFFLATALFFLSD 529

Query: 387 FLKSIDKFNE 396
             K+  + N+
Sbjct: 530 RAKAEQQVNQ 539

Sphingolipid transporter required for migration of myocardial precursors. Transports sphingosine 1-phosphate (S1P), a secreted lipid mediator that plays critical roles in cardiovascular, immunological, and neural development and function. Mediates the export of S1P from cells in the extraembryonic yolk syncytial layer (YSL), thereby regulating myocardial precursor migration.

Mus musculus (taxid: 10090)

>sp|Q9GQQ0|SPIN_DROME Protein spinster OS=Drosophila melanogaster GN=spin PE=1 SV=1

 Score = 97.1 bits (240), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 100/376 (26%), Positives = 163/376 (43%), Gaps = 61/376 (16%)

Query: 1   MVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDF-WSIAICRMLVGVGEA 59
           ++  +V +PIF  L   ++   ++ VG+ +W+  T        F W IA  R LVG+GEA
Sbjct: 160 VISYMVCAPIFGYLGDRYSRPWIMAVGVGLWSTTTLLGSFMKQFGWFIAF-RALVGIGEA 218

Query: 60  SFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHL--NWRYAFWGEA 117
           S+ ++A   I D      ++  L++FY  IP G  LGY+ G    +HL  +WR+A     
Sbjct: 219 SYSTIAPTIISDLFVHDMRSKMLALFYFAIPVGSGLGYIVGSKT-AHLANDWRWALRVTP 277

Query: 118 ILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERS 177
           IL +    L  +IK                 V   SEGS   NL                
Sbjct: 278 ILGIVAVFLILLIK---------------DPVRGHSEGSH--NL---------------- 304

Query: 178 IKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHM 237
                      + + + QD K L++ + ++++  G+    FV GA ++WGP   Y    M
Sbjct: 305 -----------EATTYKQDIKALVRNRSFMLSTAGFTCVAFVAGALAWWGPSFIYLGMKM 353

Query: 238 S--NADMM-------FGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISC 288
              N +++       FG +T++ G++G   G F+   +      A  ++ A   L +   
Sbjct: 354 QPGNENIVQDDVAFNFGVITMLAGLLGVPLGSFLSQYLVKRYPTADPVICAFGLLVSAPL 413

Query: 289 LTAFCL---SSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIF 345
           LT  CL   S+  G  AL   G+L +    A V  + L+ V P+ R+ + A   +  H  
Sbjct: 414 LTGACLLVNSNSVGTYALIFFGQLALNLNWAIVADILLYVVVPTRRSTAEAFQILISHAL 473

Query: 346 GDVPSSPLVGVLQDHV 361
           GD  S  LVG + + +
Sbjct: 474 GDAGSPYLVGAISEAI 489

Probable sphingolipid transporter that plays a central role in endosomes and/or lysosomes storage. Involved in TGF-beta-mediated synaptic growth regulation both pre- and postsynaptically via its function in endosomal storage regulation. Also required during oogenesis by regulating yolk spheres storage.

Drosophila melanogaster (taxid: 7227)

>sp|Q9D232|SPNS3_MOUSE Protein spinster homolog 3 OS=Mus musculus GN=Spns3 PE=2 SV=1

 Score = 95.5 bits (236), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 115/440 (26%), Positives = 178/440 (40%), Gaps = 80/440 (18%)

Query: 4   LLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSF----DFWSIAICRMLVGVGEA 59
           LLV++P+F  L   +N   ++  G+ +W+   AG  SSF      W   + R  VG G A
Sbjct: 98  LLVSAPVFGYLGDRYNRKAILSFGILLWS--GAGLSSSFISYQYSWLFFLSRGFVGTGAA 155

Query: 60  SFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHL-NWRYAFWGEAI 118
           S+ ++A   + D     Q+T  L++FY+ IP G  LGYV G  V     NWR+     A+
Sbjct: 156 SYSTIAPTVLGDLFVKDQRTCALAVFYIFIPVGSGLGYVLGSTVAELTGNWRW-----AL 210

Query: 119 LMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSI 178
            ++P                                 + A  L   +  D+   A+E+  
Sbjct: 211 RLMP------------------------------CLDAMALALLILLVPDVPRGAAEKQ- 239

Query: 179 KSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGY--NIYH 236
              GE       S + +D + L +   +V + LG  A  FV GA  +W PK  +   + H
Sbjct: 240 ---GEVAVRAPRSSWCEDVRYLGRNWSFVFSTLGVTAIAFVTGALGFWAPKFLFEARVVH 296

Query: 237 -----------MSNADMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGA 285
                       S   ++FG +T+  GI+G + G     +       A  L+ A++    
Sbjct: 297 GLQLPCFQEQCHSQDSLIFGALTVATGIIGVMLGAEASRRYKKVNPRAEPLICASSLFAT 356

Query: 286 ISCL-TAFCLSSL-----YGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAIST 339
             CL  A  L+S      Y FLAL   GELL+    A V  + L  V P  R  + A+  
Sbjct: 357 APCLYLALILASRTLLASYVFLAL---GELLLSCNWAVVADILLSVVVPRCRGTAEALQI 413

Query: 340 VSIHIFGDVPSSPLVG----VLQ-DHVNNWRKTTLALTSIFF-------LAAGIWFVGIF 387
              H+ GD  S  L G    VLQ +  +++ +  L+L   F        L  G + +   
Sbjct: 414 TVAHVLGDAGSPYLTGLISSVLQAERPDSYLQHFLSLQHSFLCCAFAIVLGGGFFLLTAL 473

Query: 388 LKSIDKFNEDGENQISLDSK 407
               D+       + +LDSK
Sbjct: 474 HLEKDQARARQPGKGTLDSK 493

Sphingolipid transporter.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	421
255576025	505	transporter, putative [Ricinus communis]	0.980	0.817	0.796	0.0
297735860	534	unnamed protein product [Vitis vinifera]	0.995	0.784	0.771	0.0
359480514	510	PREDICTED: protein spinster homolog 1-li	0.995	0.821	0.771	0.0
255554517	541	transporter, putative [Ricinus communis]	0.990	0.770	0.716	1e-175
357485271	497	Spinster-like protein [Medicago truncatu	0.978	0.828	0.719	1e-172
356531403	496	PREDICTED: protein spinster homolog 1-li	0.978	0.830	0.711	1e-169
356546730	532	PREDICTED: protein spinster homolog 1-li	0.985	0.780	0.693	1e-169
356519493	530	PREDICTED: protein spinster homolog 1-li	0.985	0.783	0.697	1e-168
357164805	606	PREDICTED: protein spinster homolog 1-li	0.983	0.683	0.684	1e-167
296088668	427	unnamed protein product [Vitis vinifera]	0.947	0.934	0.711	1e-167

>gi|255576025|ref|XP_002528908.1| transporter, putative [Ricinus communis] gi|223531662|gb|EEF33488.1| transporter, putative [Ricinus communis]

 Score =  675 bits (1742), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 332/417 (79%), Positives = 369/417 (88%), Gaps = 4/417 (0%)

Query: 1   MVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEAS 60
           MVGLL+ASPIFASLAKSHNPFRLIGVGLSVWTFA AGCGSSFDFWSIAICRMLVGVGEAS
Sbjct: 82  MVGLLLASPIFASLAKSHNPFRLIGVGLSVWTFAAAGCGSSFDFWSIAICRMLVGVGEAS 141

Query: 61  FISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILM 120
           FISLAAPFIDDNAP  QKTAWL+ FYMCIPTGVALGYVYGG VGS+ NWRYAFWGEA+LM
Sbjct: 142 FISLAAPFIDDNAPAAQKTAWLATFYMCIPTGVALGYVYGGFVGSNFNWRYAFWGEALLM 201

Query: 121 LPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKS 180
           LPFAVL F +KPLQLKGFAPAES KA + +S+   + AS   D+ +EDIS +A + S K 
Sbjct: 202 LPFAVLGFAMKPLQLKGFAPAESKKA-LTSSIE--ANASITEDNGNEDISSRAFKAS-KL 257

Query: 181 IGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNA 240
            GE   L+QLSQFS+D KVLL +KVYVVNVLGYI+YNFVIGAYSYWGPKAGYNIYHMSNA
Sbjct: 258 KGEFTILHQLSQFSKDMKVLLVDKVYVVNVLGYISYNFVIGAYSYWGPKAGYNIYHMSNA 317

Query: 241 DMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGF 300
           DMMFGGVTI+CGI+GT++GGFILD+M ATISNAFKLLS ATFLGAI C +AFCL +LYGF
Sbjct: 318 DMMFGGVTIICGILGTLAGGFILDRMNATISNAFKLLSGATFLGAIFCFSAFCLKNLYGF 377

Query: 301 LALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDH 360
           + LF+VGELLVFATQAPVNYVCLH VKP LR LSMAISTVSIHIFGDVPSSPLVGVLQDH
Sbjct: 378 IILFSVGELLVFATQAPVNYVCLHCVKPGLRPLSMAISTVSIHIFGDVPSSPLVGVLQDH 437

Query: 361 VNNWRKTTLALTSIFFLAAGIWFVGIFLKSIDKFNEDGENQISLDSKANMKPLLEGN 417
           +NNWR+T+L LT++ F+AAGIWFVG+FLK +D  NEDGENQIS + K +M+PLLE N
Sbjct: 438 INNWRETSLILTAVLFIAAGIWFVGVFLKGVDMSNEDGENQISANVKGSMEPLLEEN 494

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297735860|emb|CBI18614.3| unnamed protein product [Vitis vinifera]

 Score =  664 bits (1714), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 327/424 (77%), Positives = 365/424 (86%), Gaps = 5/424 (1%)

Query: 1   MVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEAS 60
           MVGLLVASPIFASLAKSHNPFRLIGVGLS WTFATAGCGSSFDFWSIAI RMLVGVGEAS
Sbjct: 106 MVGLLVASPIFASLAKSHNPFRLIGVGLSFWTFATAGCGSSFDFWSIAIFRMLVGVGEAS 165

Query: 61  FISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILM 120
           F+SLAAPFIDDNAPV QKTAWL+MFYMCIPTG+ALGYVYGG VG H NWRYAFWGEAILM
Sbjct: 166 FVSLAAPFIDDNAPVTQKTAWLAMFYMCIPTGIALGYVYGGFVGEHFNWRYAFWGEAILM 225

Query: 121 LPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHV---SEDISDQASERS 177
           LPFAVL FV+KPLQLKGFAPAES K   V   +EG   SN+N  V   +E IS+ AS ++
Sbjct: 226 LPFAVLGFVMKPLQLKGFAPAES-KNATVGPETEGPGLSNVNGGVLIRNELISNNASNKA 284

Query: 178 IKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHM 237
            KS G  +  NQ  +F  D K+LL +KVYVVNVLGY++YNFVIGAYSYWGPKAGYNIYHM
Sbjct: 285 SKSRGAFKMCNQFPRFLIDMKMLLLDKVYVVNVLGYVSYNFVIGAYSYWGPKAGYNIYHM 344

Query: 238 SNADMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSL 297
           +NADMMFGG+TIVCGI+GT++GG+ILD M ATISNAFKLLS ATFLGAI C  +FCL  L
Sbjct: 345 NNADMMFGGITIVCGILGTLAGGYILDCMDATISNAFKLLSGATFLGAIFCFISFCLKGL 404

Query: 298 YGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVL 357
           YGF+ALF+VGELLVFATQAPVNYVCLH V+PSLR LSMA+STV+IHIFGDVPSSPLVG+L
Sbjct: 405 YGFIALFSVGELLVFATQAPVNYVCLHCVRPSLRPLSMAMSTVAIHIFGDVPSSPLVGIL 464

Query: 358 QDHVNNWRKTTLALTSIFFLAAGIWFVGIFLKSIDKFNEDGENQISLDSKANMKPLLEGN 417
           QDHVNNWR+TTL LTS+ FLA+GIWF+G+FL S+D+F  D ENQ S+ SKA MKPLLEG 
Sbjct: 465 QDHVNNWRETTLILTSVLFLASGIWFLGVFLDSVDRFKLDSENQ-SVQSKATMKPLLEGE 523

Query: 418 GDNL 421
            D +
Sbjct: 524 DDEM 527

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359480514|ref|XP_002273321.2| PREDICTED: protein spinster homolog 1-like [Vitis vinifera]

 Score =  664 bits (1714), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 327/424 (77%), Positives = 365/424 (86%), Gaps = 5/424 (1%)

Query: 1   MVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEAS 60
           MVGLLVASPIFASLAKSHNPFRLIGVGLS WTFATAGCGSSFDFWSIAI RMLVGVGEAS
Sbjct: 82  MVGLLVASPIFASLAKSHNPFRLIGVGLSFWTFATAGCGSSFDFWSIAIFRMLVGVGEAS 141

Query: 61  FISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILM 120
           F+SLAAPFIDDNAPV QKTAWL+MFYMCIPTG+ALGYVYGG VG H NWRYAFWGEAILM
Sbjct: 142 FVSLAAPFIDDNAPVTQKTAWLAMFYMCIPTGIALGYVYGGFVGEHFNWRYAFWGEAILM 201

Query: 121 LPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHV---SEDISDQASERS 177
           LPFAVL FV+KPLQLKGFAPAES K   V   +EG   SN+N  V   +E IS+ AS ++
Sbjct: 202 LPFAVLGFVMKPLQLKGFAPAES-KNATVGPETEGPGLSNVNGGVLIRNELISNNASNKA 260

Query: 178 IKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHM 237
            KS G  +  NQ  +F  D K+LL +KVYVVNVLGY++YNFVIGAYSYWGPKAGYNIYHM
Sbjct: 261 SKSRGAFKMCNQFPRFLIDMKMLLLDKVYVVNVLGYVSYNFVIGAYSYWGPKAGYNIYHM 320

Query: 238 SNADMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSL 297
           +NADMMFGG+TIVCGI+GT++GG+ILD M ATISNAFKLLS ATFLGAI C  +FCL  L
Sbjct: 321 NNADMMFGGITIVCGILGTLAGGYILDCMDATISNAFKLLSGATFLGAIFCFISFCLKGL 380

Query: 298 YGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVL 357
           YGF+ALF+VGELLVFATQAPVNYVCLH V+PSLR LSMA+STV+IHIFGDVPSSPLVG+L
Sbjct: 381 YGFIALFSVGELLVFATQAPVNYVCLHCVRPSLRPLSMAMSTVAIHIFGDVPSSPLVGIL 440

Query: 358 QDHVNNWRKTTLALTSIFFLAAGIWFVGIFLKSIDKFNEDGENQISLDSKANMKPLLEGN 417
           QDHVNNWR+TTL LTS+ FLA+GIWF+G+FL S+D+F  D ENQ S+ SKA MKPLLEG 
Sbjct: 441 QDHVNNWRETTLILTSVLFLASGIWFLGVFLDSVDRFKLDSENQ-SVQSKATMKPLLEGE 499

Query: 418 GDNL 421
            D +
Sbjct: 500 DDEM 503

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255554517|ref|XP_002518297.1| transporter, putative [Ricinus communis] gi|223542517|gb|EEF44057.1| transporter, putative [Ricinus communis]

 Score =  621 bits (1601), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 304/424 (71%), Positives = 348/424 (82%), Gaps = 7/424 (1%)

Query: 1   MVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEAS 60
           MVGLLVASPIFASLAKS NPFRLIGVGLSVWT A  GCG S +FWSI ICRM VGVGEAS
Sbjct: 107 MVGLLVASPIFASLAKSFNPFRLIGVGLSVWTLAVVGCGFSINFWSITICRMFVGVGEAS 166

Query: 61  FISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILM 120
           FISLAAPFIDDNAPV QKTAWL++FYMCIP+G A GYVYGG+VG H NWR+AFWGEAILM
Sbjct: 167 FISLAAPFIDDNAPVAQKTAWLAIFYMCIPSGYAFGYVYGGLVGDHANWRWAFWGEAILM 226

Query: 121 LPFAVLAFVIKPLQLKGFAPAESGKA--QVVASVSE-----GSEASNLNDHVSEDISDQA 173
           LPF VL F++KPLQLKGFAPAES KA   V  +VSE      S     N  V E+++D++
Sbjct: 227 LPFVVLGFLMKPLQLKGFAPAESKKALTSVETAVSEVQDTETSAGKGENLSVKEELNDKS 286

Query: 174 SERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYN 233
            + S  S   +  LNQ S+F +D K LL EKVYVVNVLGYIAYNFVIGAYSYWGPKAGYN
Sbjct: 287 PKPSCMSRYATFSLNQFSRFIKDMKALLVEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYN 346

Query: 234 IYHMSNADMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFC 293
           IY+M+NADM+FGG+TIVCGI+GT++GG+ILD M +TI NAFKLLS ATFLGAI C +AFC
Sbjct: 347 IYNMTNADMIFGGITIVCGILGTMAGGYILDYMTSTIPNAFKLLSVATFLGAIFCFSAFC 406

Query: 294 LSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPL 353
             S+Y FLALF +GELLVFATQ PVNY+CLH VKPS+R LSMA+S VSIHIFGDVPSSPL
Sbjct: 407 FKSMYVFLALFAIGELLVFATQGPVNYICLHCVKPSMRPLSMAMSIVSIHIFGDVPSSPL 466

Query: 354 VGVLQDHVNNWRKTTLALTSIFFLAAGIWFVGIFLKSIDKFNEDGENQISLDSKANMKPL 413
           VGVLQD +NNWR T L LT+I F AA IWF+GIFLKS+DKFNE+ E+Q+++  ++N  PL
Sbjct: 467 VGVLQDKINNWRLTALILTAILFPAAFIWFIGIFLKSVDKFNEESEHQVAVTDRSNTTPL 526

Query: 414 LEGN 417
           LEG 
Sbjct: 527 LEGK 530

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357485271|ref|XP_003612923.1| Spinster-like protein [Medicago truncatula] gi|355514258|gb|AES95881.1| Spinster-like protein [Medicago truncatula]

 Score =  610 bits (1572), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 302/420 (71%), Positives = 345/420 (82%), Gaps = 8/420 (1%)

Query: 1   MVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEAS 60
           MVGLL+ASPIFASLAKSHNPFRLIGVGLSVWTFA AGCGSSFDFWSIAICRMLVGVGEAS
Sbjct: 80  MVGLLIASPIFASLAKSHNPFRLIGVGLSVWTFAVAGCGSSFDFWSIAICRMLVGVGEAS 139

Query: 61  FISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILM 120
           FISLAAPFIDDNAPV QKTAWL+ FYMCIP G ALGYVYGG+VGS  NWR AFWGEAI M
Sbjct: 140 FISLAAPFIDDNAPVAQKTAWLATFYMCIPAGTALGYVYGGLVGSQFNWRVAFWGEAIFM 199

Query: 121 LPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKS 180
           LPF +L F+IKPLQLKGF P ES + +   + +E + + N +D +  +  DQA  R  K 
Sbjct: 200 LPFPILGFLIKPLQLKGFGPMESKQTR---TSNETNVSENGDDGILAE--DQAFIRGSKL 254

Query: 181 IGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNA 240
              S+  NQ ++F  D + LL E+VYV+NVLGYIAYNFVIGAYSYWGPKAGY+IYHMSNA
Sbjct: 255 --TSKLGNQFTRFLNDMQELLHERVYVINVLGYIAYNFVIGAYSYWGPKAGYSIYHMSNA 312

Query: 241 DMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGF 300
           D++FGG+TIVCGI GT++GG ILD+M +TISNAFK+LS ATFLGAI CL AF    L+GF
Sbjct: 313 DLLFGGITIVCGIFGTLAGGLILDKMSSTISNAFKILSGATFLGAIFCLVAFLFKGLFGF 372

Query: 301 LALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDH 360
           + LF+VGELL+FATQAPVNYV L  VKPSLR LSMAISTVSIHIFGDVPS+PLVGVLQDH
Sbjct: 373 IILFSVGELLIFATQAPVNYVSLRCVKPSLRPLSMAISTVSIHIFGDVPSAPLVGVLQDH 432

Query: 361 VNNWRKTTLALTSIFFLAAGIWFVGIFLKSIDKFNEDGENQISLDS-KANMKPLLEGNGD 419
           +N+WRKT++ LTSIFFLAAG+WF+G FLKS D FN+D E   S  + +   KPLLEG  D
Sbjct: 433 INDWRKTSICLTSIFFLAAGVWFIGTFLKSDDLFNKDDEEDESTTTLRGVRKPLLEGIND 492

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356531403|ref|XP_003534267.1| PREDICTED: protein spinster homolog 1-like [Glycine max]

 Score =  600 bits (1547), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 299/420 (71%), Positives = 343/420 (81%), Gaps = 8/420 (1%)

Query: 1   MVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEAS 60
           MVGLL+ASPIFASLAKSHNPFRLIGVGLSVWT A AGCGSSFDFWSIAICRMLVGVGEAS
Sbjct: 80  MVGLLIASPIFASLAKSHNPFRLIGVGLSVWTLAIAGCGSSFDFWSIAICRMLVGVGEAS 139

Query: 61  FISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILM 120
           FISLAAPFIDDNAP  QKTAWL+ FYMCIP G ALGYVYGG+VGS  NWR AFW EAILM
Sbjct: 140 FISLAAPFIDDNAPDAQKTAWLATFYMCIPAGTALGYVYGGIVGSQFNWRVAFWVEAILM 199

Query: 121 LPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKS 180
           LPF +L FVIKPLQLKGFAP ES K  +  + +  SE  + +D ++ED   QA  +  KS
Sbjct: 200 LPFPILGFVIKPLQLKGFAPLES-KQTLTYTETNVSETGD-DDTLAED---QALLKGSKS 254

Query: 181 IGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNA 240
              S+  NQ + FS+D + LL ++VYV+NVLGYIAYNFVIGAYSYWGPKAGY+IYHM+NA
Sbjct: 255 --TSKLWNQFTIFSKDMQELLHDQVYVINVLGYIAYNFVIGAYSYWGPKAGYSIYHMNNA 312

Query: 241 DMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGF 300
           D++FGG+TIVCGIVGT++GG  LD++ +TISNAFKLLS ATFLGAI CL AF   SL GF
Sbjct: 313 DLLFGGITIVCGIVGTLAGGLFLDRISSTISNAFKLLSGATFLGAIFCLIAFLFKSLSGF 372

Query: 301 LALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDH 360
           +  F++GELL+F TQAPVNYV L  VKPSLR LSMAISTVSIH+FGDVPSSPLVGVLQDH
Sbjct: 373 IVFFSMGELLIFVTQAPVNYVSLRCVKPSLRPLSMAISTVSIHVFGDVPSSPLVGVLQDH 432

Query: 361 VNNWRKTTLALTSIFFLAAGIWFVGIFLKSIDKFNEDGENQISLDSKANMKPLLEGNGDN 420
           +N+WRKT L LTSIFFLAA IWF+GIFLKS D +++D E Q +      + PLL+G+ D 
Sbjct: 433 INDWRKTALCLTSIFFLAAVIWFIGIFLKS-DVYDKDDEEQSATTRGGKLTPLLDGSSDT 491

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356546730|ref|XP_003541776.1| PREDICTED: protein spinster homolog 1-like [Glycine max]

 Score =  599 bits (1544), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 292/421 (69%), Positives = 343/421 (81%), Gaps = 6/421 (1%)

Query: 1   MVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEAS 60
           MVGLLVASPIFASLAKS NPFRLIGVGLSVWT AT  CG SF+FWSI+ICRMLVGVGEAS
Sbjct: 98  MVGLLVASPIFASLAKSVNPFRLIGVGLSVWTLATLCCGFSFNFWSISICRMLVGVGEAS 157

Query: 61  FISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILM 120
           FISLAAPFIDDNAPV QKTAWL++FYMCIP+G ALGYVYGG+VGSHL WRYAFW E++ M
Sbjct: 158 FISLAAPFIDDNAPVTQKTAWLAIFYMCIPSGYALGYVYGGLVGSHLGWRYAFWVESLFM 217

Query: 121 LPFAVLAFVIKPLQLKGFAPAESGKA---QVVASVSEGSEASNLNDH---VSEDISDQAS 174
           +PFA+    +KPLQL+GF PA+S K    + VAS  +  EASN  D    +  ++ D++S
Sbjct: 218 VPFAISGLFMKPLQLRGFVPADSKKTLTPETVASGVQVMEASNGKDEPLSLKAELRDKSS 277

Query: 175 ERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNI 234
               KS   ++   + S+F  D K LL +KVYVVNVLGYIAYNFVIGAYSYWGPKAGYNI
Sbjct: 278 NDHSKSKSVTQIFEKFSRFLNDMKELLLDKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNI 337

Query: 235 YHMSNADMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCL 294
           YHM++AD++FGG+TIVCGIVGT++GGF+LD M  T+SNAFKLLS  TF+GA  C  AF  
Sbjct: 338 YHMTDADLIFGGITIVCGIVGTLAGGFVLDYMSNTLSNAFKLLSITTFIGAAFCFGAFLF 397

Query: 295 SSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLV 354
            S+YGFLALF++GELLVFATQ PVNYVCL  VKPSLR LSMA+STV IHIFGDVPSSPLV
Sbjct: 398 RSMYGFLALFSIGELLVFATQGPVNYVCLRCVKPSLRPLSMAMSTVVIHIFGDVPSSPLV 457

Query: 355 GVLQDHVNNWRKTTLALTSIFFLAAGIWFVGIFLKSIDKFNEDGENQISLDSKANMKPLL 414
           GVLQD++NNWR T L LTSI FLAAGIWF+GIFL ++D+F+ED E+Q+S   ++N  PLL
Sbjct: 458 GVLQDNINNWRTTALILTSILFLAAGIWFIGIFLHTVDRFDEDSEHQVSNVERSNTMPLL 517

Query: 415 E 415
           +
Sbjct: 518 Q 518

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356519493|ref|XP_003528407.1| PREDICTED: protein spinster homolog 1-like [Glycine max]

 Score =  598 bits (1541), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 295/423 (69%), Positives = 344/423 (81%), Gaps = 8/423 (1%)

Query: 1   MVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEAS 60
           MVGLLVASPIFASLAKS NPFRLIGVGLSVWT AT  CG SF+FWSIA+CRMLVGVGEAS
Sbjct: 97  MVGLLVASPIFASLAKSVNPFRLIGVGLSVWTLATLCCGFSFNFWSIAVCRMLVGVGEAS 156

Query: 61  FISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILM 120
           FISLAAPFIDDNAPV QKTAWL++FYMCIP G A+GY+YGG+VG+H  WRY FW EAILM
Sbjct: 157 FISLAAPFIDDNAPVSQKTAWLAIFYMCIPAGYAIGYIYGGLVGNHFGWRYGFWVEAILM 216

Query: 121 LPFAVLAFVIKPLQLKGFAPAESGKAQVVASV-SEGSE--ASNLNDH---VSEDISDQAS 174
            PFA+L FV+KPLQLKGFAP +S KA  + +V SE S+  ASN  D    +  +  D++S
Sbjct: 217 SPFAILGFVMKPLQLKGFAPTDSEKALTLGTVASEVSDVGASNGKDEALSLKAEFRDKSS 276

Query: 175 ERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNI 234
               +S  +   L+Q S+F +D K LL +KV+VVNVLGYIAYNFVIGAYSYWGPKAGY+I
Sbjct: 277 HEPSRS--KCTILDQFSRFLKDMKELLLDKVFVVNVLGYIAYNFVIGAYSYWGPKAGYSI 334

Query: 235 YHMSNADMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCL 294
           Y+M+NADMMFGG+T+VCGI+GT++GGF+LD M  TISNAFKLLS ATF+G   C  AF  
Sbjct: 335 YNMTNADMMFGGITVVCGILGTVAGGFVLDFMTNTISNAFKLLSIATFIGGACCFGAFLF 394

Query: 295 SSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLV 354
            S YGFLALF VGELLVFATQ PVNYVCLH VKPSLR LSMA+STV+IHIFGDVPSSPLV
Sbjct: 395 KSQYGFLALFAVGELLVFATQGPVNYVCLHCVKPSLRPLSMAMSTVAIHIFGDVPSSPLV 454

Query: 355 GVLQDHVNNWRKTTLALTSIFFLAAGIWFVGIFLKSIDKFNEDGENQISLDSKANMKPLL 414
           G++QD +NNWR T L LT+IFF AA IWF+GIFL S+D+FNED E+++S   + +  PLL
Sbjct: 455 GLMQDKINNWRTTALILTTIFFPAAAIWFIGIFLPSVDRFNEDSEHEVSSVERTSTAPLL 514

Query: 415 EGN 417
           E N
Sbjct: 515 EEN 517

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357164805|ref|XP_003580172.1| PREDICTED: protein spinster homolog 1-like [Brachypodium distachyon]

 Score =  594 bits (1531), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 289/422 (68%), Positives = 343/422 (81%), Gaps = 8/422 (1%)

Query: 1   MVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEAS 60
           MVGLLVASPIFASLAK HNPFRLIGVGL VWT ATAGCG SFDFWSI ICRMLVGVGEAS
Sbjct: 177 MVGLLVASPIFASLAKIHNPFRLIGVGLLVWTIATAGCGCSFDFWSITICRMLVGVGEAS 236

Query: 61  FISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILM 120
           FISLAAPFIDDNAPV QKTAWL+MFYMCIPTG+ALGYVYGG+VG  L+WR AFWGE+ILM
Sbjct: 237 FISLAAPFIDDNAPVAQKTAWLAMFYMCIPTGIALGYVYGGLVGKRLHWRAAFWGESILM 296

Query: 121 LPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLN------DHVSEDISDQAS 174
           LPF +L FVIKPL+LKGF   +  K        E  + +N N         +E ++++  
Sbjct: 297 LPFVILGFVIKPLELKGFTHNKKTKEYGPMLNPELRDETNNNGIKQGVPAGTEGLTEKIP 356

Query: 175 ER-SIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYN 233
           +R S  S G+ + + ++  F QD K LLQEKVYV+NVLGYIAYNFVIGAYSYWGPKAG +
Sbjct: 357 QRFSFSSFGK-KVMIEIGHFGQDMKELLQEKVYVINVLGYIAYNFVIGAYSYWGPKAGQD 415

Query: 234 IYHMSNADMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFC 293
           IY M++AD+MFGG+TIVCGI GT++GGFILD++ +TISNAFKLLS ATFLGAI C +AFC
Sbjct: 416 IYKMASADLMFGGITIVCGIFGTLAGGFILDKIESTISNAFKLLSGATFLGAIFCFSAFC 475

Query: 294 LSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPL 353
             SLYGF+  F+VGELLVFATQAPVNY+CLH VKPSLR LSMA+STVSIHIFGDVPSSPL
Sbjct: 476 FKSLYGFIPFFSVGELLVFATQAPVNYICLHCVKPSLRPLSMAMSTVSIHIFGDVPSSPL 535

Query: 354 VGVLQDHVNNWRKTTLALTSIFFLAAGIWFVGIFLKSIDKFNEDGENQISLDSKANMKPL 413
           VG+LQD+++NWR T L LTSI F+A   WF+GIF++S+D+FNE  E+ +    ++N++PL
Sbjct: 536 VGLLQDNIHNWRATALTLTSILFIAVIFWFIGIFVRSVDRFNEQSEHGLPAAERSNLRPL 595

Query: 414 LE 415
           L+
Sbjct: 596 LD 597

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296088668|emb|CBI38036.3| unnamed protein product [Vitis vinifera]

 Score =  593 bits (1530), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 289/406 (71%), Positives = 331/406 (81%), Gaps = 7/406 (1%)

Query: 17  SHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVP 76
           S NPFRLIGVGLSVWT A  GCG SF+FWSI ICRM VGVGEASFISLAAPFIDDNAPV 
Sbjct: 11  SVNPFRLIGVGLSVWTVAAVGCGFSFNFWSITICRMFVGVGEASFISLAAPFIDDNAPVA 70

Query: 77  QKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLK 136
           QKTAWL++FYMCIP+G+A+GYVYGG+VG H +WRYAFWGEAILMLPFA+L F++KPLQLK
Sbjct: 71  QKTAWLAIFYMCIPSGIAVGYVYGGLVGDHFSWRYAFWGEAILMLPFAILGFIMKPLQLK 130

Query: 137 GFAPAESGKAQV----VASVSEGSEASNLND---HVSEDISDQASERSIKSIGESRFLNQ 189
           GFAPA+S K Q     +A   + +EA N  D    +  D   Q+S     S   S  +NQ
Sbjct: 131 GFAPAKSKKTQTAVETIAQEGQDTEALNGKDGALSMKADSKYQSSNTPSGSTISSNNVNQ 190

Query: 190 LSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADMMFGGVTI 249
            S+F +D KVLL +KVYVVNVLGYI+YNFVIGAYSYWGPKAGYNIY+MS AD++FGG+TI
Sbjct: 191 FSRFFKDMKVLLCDKVYVVNVLGYISYNFVIGAYSYWGPKAGYNIYNMSKADLIFGGITI 250

Query: 250 VCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGEL 309
           VCGI+GTI+GG ILD M +TISNAFKLLS ATF GAI C +AFC  SLYGFLALF++GEL
Sbjct: 251 VCGILGTIAGGCILDLMTSTISNAFKLLSTATFFGAICCFSAFCFKSLYGFLALFSIGEL 310

Query: 310 LVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTL 369
           LVFATQ PVNYVCLH VKPSLR LSMA+STV+IHIFGDVPSSPLVGVLQD VNNWR+T L
Sbjct: 311 LVFATQGPVNYVCLHCVKPSLRPLSMAMSTVAIHIFGDVPSSPLVGVLQDSVNNWRETAL 370

Query: 370 ALTSIFFLAAGIWFVGIFLKSIDKFNEDGENQISLDSKANMKPLLE 415
            LTSI FLAAGIWF+GIFL  +D+FNE+ E+  +   K+N  PLLE
Sbjct: 371 ILTSILFLAAGIWFIGIFLHGVDRFNEESEHHATRIDKSNTTPLLE 416

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	421
TAIR|locus:2179401	484	AT5G64500 "AT5G64500" [Arabido	0.529	0.460	0.641	2.3e-131
TAIR|locus:2066045	510	AT2G22730 "AT2G22730" [Arabido	0.878	0.725	0.614	3.3e-118
TAIR|locus:504954889	492	AT5G65687 "AT5G65687" [Arabido	0.938	0.802	0.543	7.6e-112
ZFIN|ZDB-GENE-060531-7	500	spns3 "spinster homolog 3 (Dro	0.287	0.242	0.302	1.5e-14
UNIPROTKB|Q9H2V7	528	SPNS1 "Protein spinster homolo	0.199	0.159	0.377	1.6e-14
UNIPROTKB|H3BMF4	573	SPNS1 "Spinster, isoform CRA_a	0.199	0.146	0.377	2.4e-14
MGI|MGI:1920908	528	Spns1 "spinster homolog 1" [Mu	0.199	0.159	0.377	4.2e-14
FB|FBgn0086676	605	spin "spinster" [Drosophila me	0.304	0.211	0.303	5e-14
UNIPROTKB|Q08DX7	528	SPNS1 "Protein spinster homolo	0.199	0.159	0.377	6.9e-14
UNIPROTKB|E2RBY9	561	SPNS1 "Uncharacterized protein	0.199	0.149	0.377	9e-14

TAIR|locus:2179401 AT5G64500 "AT5G64500" [Arabidopsis thaliana (taxid:3702)]

 Score = 742 (266.3 bits), Expect = 2.3e-131, Sum P(2) = 2.3e-131
 Identities = 145/226 (64%), Positives = 171/226 (75%)

Query:   191 SQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADMMFXXXXXX 250
             S   +D K+LL +KVYV N+LGYIAYNFV+GAYSYWGPKAGYNIY M NADM+F      
Sbjct:   259 SAVMKDLKLLLVDKVYVTNILGYIAYNFVLGAYSYWGPKAGYNIYKMENADMIFGGVTVV 318

Query:   251 XXXXXXXXXXFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELL 310
                        ILD M ATISNAFK+LS +TF+GAI C  AFC  S+Y FLALF VGELL
Sbjct:   319 CGIVGTLSGGVILDYMDATISNAFKVLSVSTFIGAIFCFAAFCFKSMYAFLALFAVGELL 378

Query:   311 VFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLA 370
             VFATQ PVN++ LH VKPSLR L+MA+STVSIHIFGDVPSSPLVGVLQD+VNNWR T+L 
Sbjct:   379 VFATQGPVNFIVLHCVKPSLRPLAMAMSTVSIHIFGDVPSSPLVGVLQDYVNNWRVTSLV 438

Query:   371 LTSIFFLAAGIWFVGIFLKSIDKFNEDGE-NQISLDSKANMKPLLE 415
             LT + F AA IW +GIFL S+D++NED E + ++ +S A   PLL+
Sbjct:   439 LTFVLFPAAAIWSIGIFLNSVDRYNEDSEPDAVTRESTA--APLLQ 482

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0055085 "transmembrane transport" evidence=IEA

GO:0016020 "membrane" evidence=ISS

GO:0006635 "fatty acid beta-oxidation" evidence=RCA

GO:0016126 "sterol biosynthetic process" evidence=RCA

GO:0016558 "protein import into peroxisome matrix" evidence=RCA

GO:0046520 "sphingoid biosynthetic process" evidence=RCA

TAIR|locus:2066045 AT2G22730 "AT2G22730" [Arabidopsis thaliana (taxid:3702)]

 Score = 1164 (414.8 bits), Expect = 3.3e-118, P = 3.3e-118
 Identities = 236/384 (61%), Positives = 273/384 (71%)

Query:    22 RLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAW 81
             RLIGVGL+VWT A  GCGSSF FW I +CRM VGVGEASFISLAAPFIDDNAP  QK AW
Sbjct:   128 RLIGVGLTVWTIAVLGCGSSFAFWFIVLCRMFVGVGEASFISLAAPFIDDNAPQEQKAAW 187

Query:    82 LSMFYMCIPTXXXXXXXXXXXXXSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPA 141
             L +FYMCIP+              H +WRYAFWGEA+LM PFAVL F++KPLQLKG   +
Sbjct:   188 LGLFYMCIPSGVALGYVYGGYVGKHFSWRYAFWGEAVLMAPFAVLGFLMKPLQLKG---S 244

Query:   142 ESGKAQXXXXXXXXXXXXNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLL 201
             E+ K               +++ +  D  + + E S  S   + F    + F++D KVL 
Sbjct:   245 ETLKNNNRL---------QVDNEIEHDQFEVSIETSKSSYANAVF-KSFTGFAKDMKVLY 294

Query:   202 QEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADMMFXXXXXXXXXXXXXXXXF 261
             +EKV+VVNVLGY++YNFVIGAYSYWGPKAGYNIY M NADM+F                F
Sbjct:   295 KEKVFVVNVLGYVSYNFVIGAYSYWGPKAGYNIYKMKNADMIFGAVTIICGIVGTLSGGF 354

Query:   262 ILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYV 321
             ILD++ ATI NAFKLLS ATFLGA+ C TAF L SLYGF+ALF +GELLVFATQAPVNYV
Sbjct:   355 ILDRVTATIPNAFKLLSGATFLGAVFCFTAFTLKSLYGFIALFALGELLVFATQAPVNYV 414

Query:   322 CLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFFLAAGI 381
             CLH VKPSLR LSMAISTV+IHIFGDVPSSPLVG++QDH+N+WRKTTL LTSI FLAA I
Sbjct:   415 CLHCVKPSLRPLSMAISTVAIHIFGDVPSSPLVGIVQDHINSWRKTTLILTSILFLAAAI 474

Query:   382 WFVG-IFLKSIDKFNEDGENQISL 404
             WF+G I L S    +E    QI L
Sbjct:   475 WFIGKINLNSFYSNDESFLVQIKL 498

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

TAIR|locus:504954889 AT5G65687 "AT5G65687" [Arabidopsis thaliana (taxid:3702)]

 Score = 1104 (393.7 bits), Expect = 7.6e-112, P = 7.6e-112
 Identities = 224/412 (54%), Positives = 279/412 (67%)

Query:     1 MVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEAS 60
             MVGLLVASPIFA L+K  NPF+LIGVGL+VWT A  GCG S++FW IA+ RM VGVGEAS
Sbjct:    90 MVGLLVASPIFAGLSKRFNPFKLIGVGLTVWTIAVIGCGFSYNFWMIAVFRMFVGVGEAS 149

Query:    61 FISLAAPFIDDNAPVPQKTAWLSMFYMCIPTXXXXXXXXXXXXXSHLNWRYAFWGEAILM 120
             FISLAAP+IDD+APV +K  WL +FYMCIP              +HL WR+AF+ EAI M
Sbjct:   150 FISLAAPYIDDSAPVARKNFWLGLFYMCIPAGVALGYVFGGYIGNHLGWRWAFYIEAIAM 209

Query:   121 LPFAVLAFVIKP-LQLKGFAPAESGKAQXXXXXXXXXXXXNLNDHVSEDISDQASERSIK 179
               F +L+F IKP  QLKGFA  +S K              ++      D   +AS+   K
Sbjct:   210 AVFVILSFCIKPPQQLKGFADKDSKKPST-----------SIETVAPTDA--EASQIKTK 256

Query:   180 SIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSN 239
             +  +S+  N +  F +D K L  EKV++VNVLGYI YNFVIGAYSYWGPKAG+ IY M N
Sbjct:   257 T-PKSK--NLVVLFGKDLKALFSEKVFIVNVLGYITYNFVIGAYSYWGPKAGFGIYKMKN 313

Query:   240 ADMMFXXXXXXXXXXXXXXXXFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYG 299
             ADM+F                ++LD++ AT+SN FKLL+A+T LGA  C TAF + ++Y 
Sbjct:   314 ADMIFGGLTIICGIIGTLGGSYVLDRINATLSNTFKLLAASTLLGAAFCFTAFLMKNMYA 373

Query:   300 FLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQD 359
             F+ALF VGE+L+FA QAPVN+VCLH V+P+LR LSMA STV IHI GDVPSSPL G +QD
Sbjct:   374 FIALFAVGEILIFAPQAPVNFVCLHCVRPNLRPLSMASSTVLIHILGDVPSSPLYGKMQD 433

Query:   360 HVNNWRKTTLALTSIFFLAAGIWFVGIFLKSIDKFNEDGENQISLDSKANMK 411
             H+ NWRK+TL +TSI FLAA IW +GIF+ S+D+ NE  E+    + K   K
Sbjct:   434 HLKNWRKSTLIITSILFLAAIIWGIGIFMNSVDRSNEVSEDDEVEEDKLESK 485

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0005739 "mitochondrion" evidence=ISM

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

ZFIN|ZDB-GENE-060531-7 spns3 "spinster homolog 3 (Drosophila)" [Danio rerio (taxid:7955)]

 Score = 128 (50.1 bits), Expect = 1.5e-14, Sum P(3) = 1.5e-14
 Identities = 39/129 (30%), Positives = 59/129 (45%)

Query:     8 SPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSF----DFWSIAICRMLVGVGEASFIS 63
             +P+F  L   ++   ++ VGL +W   T G  SSF     FW +   R LVG GEAS+ +
Sbjct:   101 APVFGYLGDRYDRKLIMIVGLVMWIVTTLG--SSFVRKSHFWVLVATRALVGTGEASYST 158

Query:    64 LAAPFIDDNAPVPQKTAWLSMFYMCIPTXXXXXXXXXXXXXSHL-NWRYAFW-GEAILML 121
             +A   I D     ++T  +S FY+ IP                  +WR+A     A+  L
Sbjct:   159 IAPTIIGDLFAGSKRTLMISFFYIFIPVGSGLGYIIGATVADATGDWRWALRVSPALGGL 218

Query:   122 PFAVLAFVI 130
                +L F+I
Sbjct:   219 GLLLLVFLI 227

GO:0055085 "transmembrane transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0006869 "lipid transport" evidence=IEA

UNIPROTKB|Q9H2V7 SPNS1 "Protein spinster homolog 1" [Homo sapiens (taxid:9606)]

 Score = 140 (54.3 bits), Expect = 1.6e-14, Sum P(3) = 1.6e-14
 Identities = 34/90 (37%), Positives = 50/90 (55%)

Query:     5 LVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSF----DFWSIAICRMLVGVGEAS 60
             +V +P+F  L   +N   L+  G++ W+  T G  SSF     FW + + R LVGVGEAS
Sbjct:   109 MVLAPVFGYLGDRYNRKYLMCGGIAFWSLVTLG--SSFIPGEHFWLLLLTRGLVGVGEAS 166

Query:    61 FISLAAPFIDDNAPVPQKTAWLSMFYMCIP 90
             + ++A   I D     Q++  LS+FY  IP
Sbjct:   167 YSTIAPTLIADLFVADQRSRMLSIFYFAIP 196

GO:0055085 "transmembrane transport" evidence=IEA

GO:0006869 "lipid transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|H3BMF4 SPNS1 "Spinster, isoform CRA_a" [Homo sapiens (taxid:9606)]

 Score = 140 (54.3 bits), Expect = 2.4e-14, Sum P(3) = 2.4e-14
 Identities = 34/90 (37%), Positives = 50/90 (55%)

Query:     5 LVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSF----DFWSIAICRMLVGVGEAS 60
             +V +P+F  L   +N   L+  G++ W+  T G  SSF     FW + + R LVGVGEAS
Sbjct:   154 MVLAPVFGYLGDRYNRKYLMCGGIAFWSLVTLG--SSFIPGEHFWLLLLTRGLVGVGEAS 211

Query:    61 FISLAAPFIDDNAPVPQKTAWLSMFYMCIP 90
             + ++A   I D     Q++  LS+FY  IP
Sbjct:   212 YSTIAPTLIADLFVADQRSRMLSIFYFAIP 241

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

MGI|MGI:1920908 Spns1 "spinster homolog 1" [Mus musculus (taxid:10090)]

 Score = 140 (54.3 bits), Expect = 4.2e-14, Sum P(3) = 4.2e-14
 Identities = 34/90 (37%), Positives = 50/90 (55%)

Query:     5 LVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSF----DFWSIAICRMLVGVGEAS 60
             +V +P+F  L   +N   L+  G++ W+  T G  SSF     FW + + R LVGVGEAS
Sbjct:   109 MVLAPVFGYLGDRYNRKYLMCGGIAFWSLVTLG--SSFIPREHFWLLLLTRGLVGVGEAS 166

Query:    61 FISLAAPFIDDNAPVPQKTAWLSMFYMCIP 90
             + ++A   I D     Q++  LS+FY  IP
Sbjct:   167 YSTIAPTLIADLFVADQRSRMLSIFYFAIP 196

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0005739 "mitochondrion" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0006869 "lipid transport" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

FB|FBgn0086676 spin "spinster" [Drosophila melanogaster (taxid:7227)]

 Score = 135 (52.6 bits), Expect = 5.0e-14, Sum P(2) = 5.0e-14
 Identities = 41/135 (30%), Positives = 65/135 (48%)

Query:     1 MVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSF-DF-WSIAICRMLVGVGE 58
             ++  +V +PIF  L   ++   ++ VG+ +W+  T   GS    F W IA  R LVG+GE
Sbjct:   160 VISYMVCAPIFGYLGDRYSRPWIMAVGVGLWSTTTL-LGSFMKQFGWFIAF-RALVGIGE 217

Query:    59 ASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTXXXXXXXXXXXXXSHL--NWRYAFWGE 116
             AS+ ++A   I D      ++  L++FY  IP              +HL  +WR+A    
Sbjct:   218 ASYSTIAPTIISDLFVHDMRSKMLALFYFAIPVGSGLGYIVGSKT-AHLANDWRWALRVT 276

Query:   117 AILMLPFAVLAFVIK 131
              IL +    L  +IK
Sbjct:   277 PILGIVAVFLILLIK 291

GO:0007422 "peripheral nervous system development" evidence=NAS

GO:0005886 "plasma membrane" evidence=NAS

GO:0045924 "regulation of female receptivity" evidence=IMP

GO:0043067 "regulation of programmed cell death" evidence=IMP

GO:0035193 "larval central nervous system remodeling" evidence=IMP

GO:0045477 "regulation of nurse cell apoptotic process" evidence=IMP

GO:0012501 "programmed cell death" evidence=NAS

GO:0007619 "courtship behavior" evidence=NAS

GO:0008582 "regulation of synaptic growth at neuromuscular junction" evidence=IMP

GO:0055085 "transmembrane transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0006897 "endocytosis" evidence=IMP

GO:0008333 "endosome to lysosome transport" evidence=IMP

GO:0040011 "locomotion" evidence=IMP

GO:0048477 "oogenesis" evidence=IMP

GO:0048488 "synaptic vesicle endocytosis" evidence=IMP

GO:0045476 "nurse cell apoptotic process" evidence=IMP

GO:0009267 "cellular response to starvation" evidence=IMP

GO:0007040 "lysosome organization" evidence=IMP

GO:0010001 "glial cell differentiation" evidence=IMP

GO:0008347 "glial cell migration" evidence=IMP

GO:0031982 "vesicle" evidence=IDA

GO:0090099 "negative regulation of decapentaplegic signaling pathway" evidence=IGI

UNIPROTKB|Q08DX7 SPNS1 "Protein spinster homolog 1" [Bos taurus (taxid:9913)]

 Score = 139 (54.0 bits), Expect = 6.9e-14, Sum P(3) = 6.9e-14
 Identities = 34/90 (37%), Positives = 50/90 (55%)

Query:     5 LVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSF----DFWSIAICRMLVGVGEAS 60
             +V +P+F  L   +N   L+  G++ W+  T G  SSF     FW + + R LVGVGEAS
Sbjct:   109 MVLAPVFGYLGDRYNRKYLMCGGIAFWSLVTLG--SSFIPRERFWLLLLTRGLVGVGEAS 166

Query:    61 FISLAAPFIDDNAPVPQKTAWLSMFYMCIP 90
             + ++A   I D     Q++  LS+FY  IP
Sbjct:   167 YSTIAPTLIADLFVADQRSRMLSVFYFAIP 196

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0006869 "lipid transport" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

UNIPROTKB|E2RBY9 SPNS1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 139 (54.0 bits), Expect = 9.0e-14, Sum P(3) = 9.0e-14
 Identities = 34/90 (37%), Positives = 50/90 (55%)

Query:     5 LVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSF----DFWSIAICRMLVGVGEAS 60
             +V +P+F  L   +N   L+  G++ W+  T G  SSF     FW + + R LVGVGEAS
Sbjct:   142 MVLAPVFGYLGDRYNRKYLMCGGIAFWSLVTLG--SSFIPRERFWLLLLTRGLVGVGEAS 199

Query:    61 FISLAAPFIDDNAPVPQKTAWLSMFYMCIP 90
             + ++A   I D     Q++  LS+FY  IP
Sbjct:   200 YSTIAPTLIADLFVADQRSRMLSVFYFAIP 229

GO:0055085 "transmembrane transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9FLG8	SPNS2_ARATH	No assigned EC number	0.6795	0.9121	0.7933	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	421
cd06174	352	cd06174, MFS, The Major Facilitator Superfamily (M	2e-14
pfam07690	346	pfam07690, MFS_1, Major Facilitator Superfamily	1e-12
TIGR00880	141	TIGR00880, 2_A_01_02, Multidrug resistance protein	2e-10
pfam03137	582	pfam03137, OATP, Organic Anion Transporter Polypep	7e-08
TIGR00895	398	TIGR00895, 2A0115, benzoate transport	4e-07
COG2814	394	COG2814, AraJ, Arabinose efflux permease [Carbohyd	1e-05
TIGR00893	399	TIGR00893, 2A0114, D-galactonate transporter	4e-04
cd06174	352	cd06174, MFS, The Major Facilitator Superfamily (M	0.002
cd06174	352	cd06174, MFS, The Major Facilitator Superfamily (M	0.002
TIGR00805	633	TIGR00805, oat, sodium-independent organic anion t	0.002
TIGR00711	485	TIGR00711, efflux_EmrB, drug resistance transporte	0.002
PRK03545	390	PRK03545, PRK03545, putative arabinose transporter	0.003

>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

 Score = 73.9 bits (182), Expect = 2e-14
 Identities = 33/133 (24%), Positives = 59/133 (44%)

Query: 1   MVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEAS 60
            +G  + S +   L+      R++ +GL ++   +     +   W + + R L+G+G  +
Sbjct: 44  SLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLAFASSLWLLLVGRFLLGLGGGA 103

Query: 61  FISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILM 120
               AA  I +  P  ++   L +F      G  LG + GG++   L WR+ F   AIL 
Sbjct: 104 LYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAILG 163

Query: 121 LPFAVLAFVIKPL 133
           L  A+L   +  L
Sbjct: 164 LLLALLLLFLLRL 176

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352

>gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily

 Score = 67.8 bits (166), Expect = 1e-12
 Identities = 62/345 (17%), Positives = 113/345 (32%), Gaps = 47/345 (13%)

Query: 1   MVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEAS 60
            +G  +A P+   L+      R++ +GL ++         +   W + + R+L G+G  +
Sbjct: 42  SLGYALAQPLAGRLSDRFGRRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGGGA 101

Query: 61  FISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILM 120
               AA  I D  P  ++   L +       G ALG + GG++ S   WR AF   AIL 
Sbjct: 102 LFPAAAALIADWFPPEERGRALGLLSAGFGLGAALGPLLGGLLASLFGWRAAFLILAILA 161

Query: 121 LPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKS 180
           L  AVLA ++ P                                 S+         +   
Sbjct: 162 LLAAVLAALLLP----------------------------RPPPESKRPKPAEEAPAPLV 193

Query: 181 IGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNA 240
                 L                   +  +L  + + F   A   + P     +  +S  
Sbjct: 194 PAWKLLLRD---------------PVLWLLLALLLFGFAFFALLTYLPLYQ-EVLGLSAL 237

Query: 241 DM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYG 299
              +  G+  + G +G +  G + D++G        LL        +  L +   SSL+ 
Sbjct: 238 LAGLLLGLAGLLGAIGRLLLGRLSDRLGRRRRLLLALLLLILAALGL-ALLSLTESSLWL 296

Query: 300 FLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHI 344
            +AL  +G          +N +         R  +  +   +  +
Sbjct: 297 LVALLLLG-FGAGLVFPALNALVSDLAPKEERGTASGLYNTAGSL 340

Length = 346

>gnl|CDD|233166 TIGR00880, 2_A_01_02, Multidrug resistance protein

 Score = 58.4 bits (142), Expect = 2e-10
 Identities = 41/132 (31%), Positives = 59/132 (44%), Gaps = 1/132 (0%)

Query: 2   VGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASF 61
           +G L+ SP+   L        ++ VGL ++  +TA    S +   + I R L G G A  
Sbjct: 9   LGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFA 68

Query: 62  ISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILML 121
           +   A  I D  P  ++   L +    I  G  LG   GGV+   L WR  F   AIL L
Sbjct: 69  LVAGAALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILAL 128

Query: 122 -PFAVLAFVIKP 132
             F +LAF++  
Sbjct: 129 AAFILLAFLLPE 140

Length = 141

>gnl|CDD|217384 pfam03137, OATP, Organic Anion Transporter Polypeptide (OATP) family

 Score = 54.2 bits (131), Expect = 7e-08
 Identities = 59/280 (21%), Positives = 97/280 (34%), Gaps = 54/280 (19%)

Query: 52  MLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGV--------- 102
           +L G+G     +L   +IDDN        +L + +     G A+G++ G           
Sbjct: 147 LLRGIGATPIFTLGISYIDDNVKSKNSPLYLGILFTMAMFGPAIGFLLGSFCLRLYVDFG 206

Query: 103 ----VGSHLN-----WRYAFW----GEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVV 149
                   +      W  A+W        L L  + + F   P  L     A+     + 
Sbjct: 207 RVPTEDVIITPTDPRWVGAWWLGFLVCGGLAL-LSAIPFFFFPKTLPK---AQGRLESLD 262

Query: 150 ASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVN 209
            S  +  + +       E  S +++   +K             F +  K LL    +++ 
Sbjct: 263 LSRPKAKDETR--KQAEEPKSGKSAPDFLK------------DFPKTLKRLLTNPTFMLV 308

Query: 210 VLGYIAYNFVIGAYSYWGPKAGYNIYHMS--NADMMFGGVTIVCGIVGTISGGFILDQMG 267
           VL  +  + VI  YS + PK     Y +S   A+ + G V +    VG + GG I+    
Sbjct: 309 VLAQVFESSVIAGYSTFLPKYLETQYGLSASYANFLIGVVNLPAAAVGILLGGLII---- 364

Query: 268 ATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVG 307
                 FKL    T  G         L SL  +L  F +G
Sbjct: 365 ----KKFKL----TARGMAKFAIFVILVSLAFYLPYFFIG 396

This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs). Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules). Thus, Tamai et al. initiated the current scheme of using digits for rat OATPs and letters for human ones. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the Swiss-Prot database) as belonging to the SLC21 family of transporters. Length = 582

>gnl|CDD|233175 TIGR00895, 2A0115, benzoate transport

 Score = 51.6 bits (124), Expect = 4e-07
 Identities = 61/333 (18%), Positives = 118/333 (35%), Gaps = 40/333 (12%)

Query: 1   MVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEAS 60
           ++G+   +  F  LA      R++   + +++  T  C  + +   + I R L G+G   
Sbjct: 62  LIGMAFGALFFGPLADRIGRRRVLLWSILLFSVFTLLCALATNVTQLLILRFLAGLGLGG 121

Query: 61  FISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFW-GEAIL 119
            +      + + AP   +   + + +   P G A+G    G +     WR  F+ G    
Sbjct: 122 LMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGWRSLFYVGGIAP 181

Query: 120 MLPFAVLAFV----IKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASE 175
           +L   +L       I  L  K          + + +       +     + E  + Q ++
Sbjct: 182 LLLLLLLMRFLPESIDFLVSKR-----PETVRRIVNAIAPQMQAEAQSALPEQKATQGTK 236

Query: 176 RSIKSIGESRFLNQLSQFSQDTKVLLQE---KVYVVNVLGYIAYNFVIGAYSYWGPK--- 229
           RS+                   K L Q    ++ V+  L Y      +   + W PK   
Sbjct: 237 RSVF------------------KALFQGKTARITVLLWLLYFMLLVGVYFLTNWLPKLMV 278

Query: 230 -AGYNIYHMSNADMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISC 288
             G++     +     G +    G++G+I  G++ D++G  ++    LL A   +   S 
Sbjct: 279 ELGFS----LSLAATGGALFNFGGVIGSIIFGWLADRLGPRVTALLLLLGAVFAVLVGST 334

Query: 289 LTAFCLSSLYGFLA-LFTVGELLVFATQAPVNY 320
           L +  L  L G +A  F  G          + Y
Sbjct: 335 LFSPTLLLLLGAIAGFFVNGGQSGLYALMALFY 367

[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 398

>gnl|CDD|225371 COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]

 Score = 46.8 bits (112), Expect = 1e-05
 Identities = 70/394 (17%), Positives = 133/394 (33%), Gaps = 70/394 (17%)

Query: 2   VGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASF 61
           +G+ + +P+ A L       RL+   L+++  +      +  F  + + R L G+    F
Sbjct: 59  LGVALGAPLLALLTGRLERRRLLLGLLALFIVSNLLSALAPSFAVLLLARALAGLAHGVF 118

Query: 62  ISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILML 121
            S+AA       P  ++   L++ +  +     LG   G  +G    WR  F   A+L  
Sbjct: 119 WSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQLFGWRATFLAIAVL-- 176

Query: 122 PFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSI 181
             A+LA +   L  K   P+E   +                                   
Sbjct: 177 --ALLALL---LLWKLLPPSEISGS----------------------------------- 196

Query: 182 GESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNAD 241
                   L    +   VLL     +   L    +      Y+Y  P    ++   S + 
Sbjct: 197 LPGPLRTLLRLLRR-PGVLL---GLLATFLFMTGHF---ALYTYIRPFLE-SVAGFSVSA 248

Query: 242 -----MMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSS 296
                + FG    + G +G + GG + D+         + L AA  L A++ L A   + 
Sbjct: 249 VSLVLLAFG----IAGFIGNLLGGRLADR------GPRRALIAALLLLALA-LLALTFTG 297

Query: 297 LYGFLALFTVGELLVFATQAPVNYVCLHS-VKPSLRALSMAISTVSIHIFGDVPSSPLVG 355
               LAL  +       + A        + + P    L+ +++  + ++ G    + L G
Sbjct: 298 ASPALALALLFLWGFAFSPALQGLQTRLARLAPDAADLAGSLNVAAFNL-GIALGAALGG 356

Query: 356 VLQDHVNNWRKTTLALTSIFFLAAGIWFVGIFLK 389
           ++ D +      T  + +   L A +  +    K
Sbjct: 357 LVLDALGYA--ATGWVGAALLLLALLLALLSARK 388

Length = 394

>gnl|CDD|233174 TIGR00893, 2A0114, D-galactonate transporter

 Score = 41.9 bits (99), Expect = 4e-04
 Identities = 53/273 (19%), Positives = 91/273 (33%), Gaps = 44/273 (16%)

Query: 30  VWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCI 89
           +W   T     +  + S+ I R+L+G  EA F       +    P  ++   +S+F    
Sbjct: 68  IWGVFTGLQAFAGAYVSLYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQ 127

Query: 90  PTGVALGYVYGGVVGSHLNWRYAFWGEAIL--MLPFAVLAFVIKPLQLKGFAPAESGKAQ 147
             G  +G    G +  H +W++AF  E +L  +     L F+  P Q   +   E     
Sbjct: 128 GLGGIIGGPLVGWILIHFSWQWAFIIEGVLGIIWGVLWLKFIPDPPQKAKWLTEEEKYIV 187

Query: 148 VVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYV 207
           V   ++E                      + K               Q  ++L   +V+ 
Sbjct: 188 VGGLLAEQQGKGP---------------STPKK-------------YQIKELLKDRRVWG 219

Query: 208 VNVLGYIAYNFVIGAYSYWGP-----KAGYNIYHMSNADMMFGGVTIVCGIVGTISGGFI 262
           +  LG    N  +G +  W P     + G +I            +  + G +G I GG +
Sbjct: 220 L-ALGQFLVNIGLGFFLTWFPTYLVQERGLSILEAG----FMASLPGIVGFIGMILGGRL 274

Query: 263 LDQMGATISNAFKLLSAATFLGAISCLTAFCLS 295
            D     +    K L  A     I+ L    L 
Sbjct: 275 SD----LLLRRGKSLVFARKTAIIAGLVLSLLM 303

[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 399

>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

 Score = 40.0 bits (94), Expect = 0.002
 Identities = 22/131 (16%), Positives = 47/131 (35%), Gaps = 1/131 (0%)

Query: 2   VGLLVASPIFASLA-KSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEAS 60
           +G ++ + +   L+ +      L+ +GL +          +     + +  +L+G G   
Sbjct: 222 LGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPSLALLLVALLLLGFGLGF 281

Query: 61  FISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILM 120
                     + AP   +     +F      G ALG +  G++     +   F   A L 
Sbjct: 282 AFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALA 341

Query: 121 LPFAVLAFVIK 131
           L  A+L  ++ 
Sbjct: 342 LLAALLLLLLP 352

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352

>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

 Score = 40.0 bits (94), Expect = 0.002
 Identities = 31/176 (17%), Positives = 59/176 (33%), Gaps = 7/176 (3%)

Query: 210 VLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGA 268
            L +   +F       + P     +  +S A+  +   +  + GI+G + GG + D++G 
Sbjct: 181 ALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLG- 239

Query: 269 TISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKP 328
                  LL     L A+  L      SL   L    +    +      +  +      P
Sbjct: 240 ---RRRLLLLIGLLLAALGLLLLALAPSLALLLVALLLLGFGLGFAFPALLTLASELAPP 296

Query: 329 SLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFFLAAGIWFV 384
             R  +  +      + G     PL+  L      +    L L ++  LAA +  +
Sbjct: 297 EARGTASGLFNTFGSLGG--ALGPLLAGLLLDTGGYGGVFLILAALALLAALLLLL 350

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352

>gnl|CDD|233136 TIGR00805, oat, sodium-independent organic anion transporter

 Score = 40.5 bits (95), Expect = 0.002
 Identities = 23/68 (33%), Positives = 36/68 (52%)

Query: 293 CLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSP 352
           C +SL  FL LF     + F T  P+  V L  V P  R+L++ +  + + +FG +P+  
Sbjct: 514 CATSLLYFLILFIPLSFIAFITAVPLYMVLLRVVNPEERSLAIGLQWLCMRVFGTIPAPI 573

Query: 353 LVGVLQDH 360
           L G+L D 
Sbjct: 574 LFGLLIDV 581

The Organo Anion Transporter (OAT) Family (TC 2.A.60)Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. Length = 633

>gnl|CDD|129794 TIGR00711, efflux_EmrB, drug resistance transporter, EmrB/QacA subfamily

 Score = 39.7 bits (93), Expect = 0.002
 Identities = 30/132 (22%), Positives = 60/132 (45%)

Query: 1   MVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEAS 60
           M+   ++ P+   LAK     RL  +    +T  +  CG + +   + I R++ G G   
Sbjct: 47  MLANAISIPLTGWLAKRFGTRRLFLISTFAFTLGSLLCGVAPNLELMIIFRVIQGFGGGP 106

Query: 61  FISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILM 120
            I L+   + +  P  ++   ++++ + +    ALG   GG +  + +WR+ F     + 
Sbjct: 107 LIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENYHWRWIFLINVPIG 166

Query: 121 LPFAVLAFVIKP 132
           +   V+AF I P
Sbjct: 167 IIVVVVAFFILP 178

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli [Cellular processes, Toxin production and resistance, Transport and binding proteins, Other]. Length = 485

>gnl|CDD|179591 PRK03545, PRK03545, putative arabinose transporter; Provisional

 Score = 39.1 bits (92), Expect = 0.003
 Identities = 30/100 (30%), Positives = 43/100 (43%), Gaps = 10/100 (10%)

Query: 38  CGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGY 97
              +++F  + I R+ +    A F S+ A      AP  +K   LS+    + TG AL  
Sbjct: 91  SALAWNFTVLLISRIGIAFAHAIFWSITASLAIRVAPAGKKAQALSL----LATGTALAM 146

Query: 98  VYG----GVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPL 133
           V G     V+G +L WR  F   AI       L  +IK L
Sbjct: 147 VLGLPLGRVIGQYLGWRTTFL--AIGGGALITLLLLIKLL 184

Length = 390

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	421
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	100.0
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	100.0
PRK10642	490	proline/glycine betaine transporter; Provisional	100.0
PRK11663	434	regulatory protein UhpC; Provisional	100.0
PRK03545	390	putative arabinose transporter; Provisional	100.0
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	100.0
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	100.0
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	100.0
PRK10406	432	alpha-ketoglutarate transporter; Provisional	100.0
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	100.0
KOG1330	493	consensus Sugar transporter/spinster transmembrane	100.0
PRK09952	438	shikimate transporter; Provisional	100.0
TIGR00893	399	2A0114 d-galactonate transporter.	100.0
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	100.0
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	100.0
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	100.0
TIGR00892	455	2A0113 monocarboxylate transporter 1.	100.0
PRK09705	393	cynX putative cyanate transporter; Provisional	100.0
TIGR00900	365	2A0121 H+ Antiporter protein.	100.0
TIGR00898	505	2A0119 cation transport protein.	100.0
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	100.0
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	100.0
PLN00028	476	nitrate transmembrane transporter; Provisional	100.0
PRK10213	394	nepI ribonucleoside transporter; Reviewed	100.0
PRK15075	434	citrate-proton symporter; Provisional	100.0
PRK10091	382	MFS transport protein AraJ; Provisional	100.0
PRK10489	417	enterobactin exporter EntS; Provisional	100.0
PRK10077	479	xylE D-xylose transporter XylE; Provisional	100.0
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	100.0
PRK03699	394	putative transporter; Provisional	100.0
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	100.0
PRK12307	426	putative sialic acid transporter; Provisional	100.0
TIGR00891	405	2A0112 putative sialic acid transporter.	100.0
PRK11646	400	multidrug resistance protein MdtH; Provisional	100.0
PRK14995	495	methyl viologen resistance protein SmvA; Provision	100.0
KOG2532	466	consensus Permease of the major facilitator superf	100.0
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	100.0
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	100.0
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	100.0
PRK05122	399	major facilitator superfamily transporter; Provisi	100.0
PRK15403	413	multidrug efflux system protein MdtM; Provisional	100.0
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	100.0
PRK09874	408	drug efflux system protein MdtG; Provisional	100.0
KOG2533	495	consensus Permease of the major facilitator superf	100.0
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	100.0
PRK11195	393	lysophospholipid transporter LplT; Provisional	100.0
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	100.0
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	100.0
KOG0569	485	consensus Permease of the major facilitator superf	100.0
PRK10504	471	putative transporter; Provisional	100.0
PRK10473	392	multidrug efflux system protein MdtL; Provisional	100.0
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	99.98
TIGR00897	402	2A0118 polyol permease family. This family of prot	99.98
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	99.98
PRK03893	496	putative sialic acid transporter; Provisional	99.98
TIGR00895	398	2A0115 benzoate transport.	99.97
PRK12382	392	putative transporter; Provisional	99.97
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	99.97
PRK03633	381	putative MFS family transporter protein; Provision	99.97
PRK11010	491	ampG muropeptide transporter; Validated	99.97
PRK10133	438	L-fucose transporter; Provisional	99.97
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.97
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	99.97
PRK15011	393	sugar efflux transporter B; Provisional	99.97
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	99.97
PRK11043	401	putative transporter; Provisional	99.97
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	99.97
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	99.97
PRK11652	394	emrD multidrug resistance protein D; Provisional	99.97
PRK10054	395	putative transporter; Provisional	99.97
TIGR00896	355	CynX cyanate transporter. This family of proteins	99.97
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.97
TIGR00805	633	oat sodium-independent organic anion transporter.	99.97
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	99.97
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	99.96
KOG0254	513	consensus Predicted transporter (major facilitator	99.96
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	99.96
KOG3764	464	consensus Vesicular amine transporter [Intracellul	99.96
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	99.96
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	99.96
PRK11902	402	ampG muropeptide transporter; Reviewed	99.96
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	99.96
TIGR00901	356	2A0125 AmpG-related permease.	99.95
PRK09528	420	lacY galactoside permease; Reviewed	99.95
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.95
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	99.95
KOG2615	451	consensus Permease of the major facilitator superf	99.95
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	99.95
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	99.95
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	99.95
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	99.94
PRK10207	489	dipeptide/tripeptide permease B; Provisional	99.94
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	99.94
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	99.94
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	99.93
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	99.92
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	99.92
PTZ00207	591	hypothetical protein; Provisional	99.91
PRK09584	500	tppB putative tripeptide transporter permease; Rev	99.91
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	99.9
KOG3626	735	consensus Organic anion transporter [Secondary met	99.9
PRK09669	444	putative symporter YagG; Provisional	99.89
PRK10429	473	melibiose:sodium symporter; Provisional	99.88
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	99.88
PRK15462	493	dipeptide/tripeptide permease D; Provisional	99.87
PF13347	428	MFS_2: MFS/sugar transport protein	99.87
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	99.87
COG2270	438	Permeases of the major facilitator superfamily [Ge	99.87
TIGR00788	468	fbt folate/biopterin transporter. The only functio	99.86
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	99.86
PRK11462	460	putative transporter; Provisional	99.85
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	99.84
PRK09848	448	glucuronide transporter; Provisional	99.84
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	99.83
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	99.77
COG2211	467	MelB Na+/melibiose symporter and related transport	99.77
KOG2563	480	consensus Permease of the major facilitator superf	99.77
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	99.71
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	99.7
KOG2816	463	consensus Predicted transporter ADD1 (major facili	99.7
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	99.63
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	99.57
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.53
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.52
KOG2325	488	consensus Predicted transporter/transmembrane prot	99.49
PRK10054	395	putative transporter; Provisional	99.49
PRK10642	490	proline/glycine betaine transporter; Provisional	99.47
PRK05122	399	major facilitator superfamily transporter; Provisi	99.46
PRK11663	434	regulatory protein UhpC; Provisional	99.45
TIGR00900	365	2A0121 H+ Antiporter protein.	99.42
PRK12382	392	putative transporter; Provisional	99.41
PRK09874	408	drug efflux system protein MdtG; Provisional	99.41
PRK09528	420	lacY galactoside permease; Reviewed	99.41
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	99.4
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	99.4
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	99.39
PRK15462	493	dipeptide/tripeptide permease D; Provisional	99.39
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	99.39
PRK10489	417	enterobactin exporter EntS; Provisional	99.39
PRK11646	400	multidrug resistance protein MdtH; Provisional	99.36
TIGR00891	405	2A0112 putative sialic acid transporter.	99.34
TIGR00893	399	2A0114 d-galactonate transporter.	99.34
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	99.33
PRK09584	500	tppB putative tripeptide transporter permease; Rev	99.33
PRK10504	471	putative transporter; Provisional	99.33
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.32
PRK03699	394	putative transporter; Provisional	99.32
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	99.31
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	99.31
PRK10207	489	dipeptide/tripeptide permease B; Provisional	99.31
PRK15011	393	sugar efflux transporter B; Provisional	99.31
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	99.31
TIGR00895	398	2A0115 benzoate transport.	99.3
PRK11195	393	lysophospholipid transporter LplT; Provisional	99.3
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	99.3
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	99.29
PRK10473	392	multidrug efflux system protein MdtL; Provisional	99.28
PRK10091	382	MFS transport protein AraJ; Provisional	99.27
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	99.27
PRK03545	390	putative arabinose transporter; Provisional	99.27
KOG3098	461	consensus Uncharacterized conserved protein [Funct	99.27
PRK10213	394	nepI ribonucleoside transporter; Reviewed	99.27
PRK12307	426	putative sialic acid transporter; Provisional	99.26
PRK14995	495	methyl viologen resistance protein SmvA; Provision	99.26
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	99.26
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	99.26
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.24
PRK11043	401	putative transporter; Provisional	99.23
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	99.23
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.23
KOG1330	493	consensus Sugar transporter/spinster transmembrane	99.22
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	99.22
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.22
PRK03893	496	putative sialic acid transporter; Provisional	99.21
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	99.2
PLN00028	476	nitrate transmembrane transporter; Provisional	99.2
TIGR00897	402	2A0118 polyol permease family. This family of prot	99.19
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	99.19
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.19
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	99.18
PRK03633	381	putative MFS family transporter protein; Provision	99.17
KOG2615	451	consensus Permease of the major facilitator superf	99.17
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.17
PRK11652	394	emrD multidrug resistance protein D; Provisional	99.17
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	99.15
PRK10077	479	xylE D-xylose transporter XylE; Provisional	99.14
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	99.12
PRK09705	393	cynX putative cyanate transporter; Provisional	99.12
PRK15403	413	multidrug efflux system protein MdtM; Provisional	99.12
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	99.11
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	99.11
TIGR00898	505	2A0119 cation transport protein.	99.1
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	99.1
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	99.09
KOG3810	433	consensus Micronutrient transporters (folate trans	99.09
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	99.08
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	99.08
KOG3762	618	consensus Predicted transporter [General function	99.05
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	99.03
PRK10133	438	L-fucose transporter; Provisional	99.03
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.03
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	99.02
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	99.01
PRK11902	402	ampG muropeptide transporter; Reviewed	99.0
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	99.0
PRK09952	438	shikimate transporter; Provisional	99.0
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	98.99
PTZ00207	591	hypothetical protein; Provisional	98.98
KOG3764	464	consensus Vesicular amine transporter [Intracellul	98.97
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	98.97
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	98.97
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	98.97
PRK11010	491	ampG muropeptide transporter; Validated	98.96
KOG4332	454	consensus Predicted sugar transporter [Carbohydrat	98.95
PRK10406	432	alpha-ketoglutarate transporter; Provisional	98.93
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	98.93
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	98.91
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	98.91
PRK15075	434	citrate-proton symporter; Provisional	98.91
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	98.89
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	98.88
TIGR00805	633	oat sodium-independent organic anion transporter.	98.86
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	98.84
TIGR00901	356	2A0125 AmpG-related permease.	98.83
TIGR00896	355	CynX cyanate transporter. This family of proteins	98.82
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	98.79
KOG0637	498	consensus Sucrose transporter and related proteins	98.79
KOG3762	618	consensus Predicted transporter [General function	98.77
COG2270	438	Permeases of the major facilitator superfamily [Ge	98.73
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	98.71
COG0477	338	ProP Permeases of the major facilitator superfamil	98.71
PRK09848	448	glucuronide transporter; Provisional	98.67
KOG0569	485	consensus Permease of the major facilitator superf	98.67
KOG2532	466	consensus Permease of the major facilitator superf	98.65
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	98.64
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	98.63
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	98.62
PRK09669	444	putative symporter YagG; Provisional	98.61
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	98.61
PF03219	491	TLC: TLC ATP/ADP transporter; InterPro: IPR004667	98.6
PRK11462	460	putative transporter; Provisional	98.59
KOG2533	495	consensus Permease of the major facilitator superf	98.57
PRK10429	473	melibiose:sodium symporter; Provisional	98.57
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	98.52
TIGR00788	468	fbt folate/biopterin transporter. The only functio	98.49
PF13347	428	MFS_2: MFS/sugar transport protein	98.49
PF00854	372	PTR2: POT family; InterPro: IPR000109 This entry r	98.49
COG2211	467	MelB Na+/melibiose symporter and related transport	98.47
KOG3574	510	consensus Acetyl-CoA transporter [Inorganic ion tr	98.46
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	98.44
PF13000	544	Acatn: Acetyl-coenzyme A transporter 1; InterPro:	98.41
KOG0254	513	consensus Predicted transporter (major facilitator	98.41
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	98.35
KOG1237	571	consensus H+/oligopeptide symporter [Amino acid tr	98.28
PF05978	156	UNC-93: Ion channel regulatory protein UNC-93; Int	98.27
COG3202	509	ATP/ADP translocase [Energy production and convers	98.27
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	98.24
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	98.2
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	98.09
KOG2325	488	consensus Predicted transporter/transmembrane prot	98.01
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	98.01
TIGR00939	437	2a57 Equilibrative Nucleoside Transporter (ENT).	98.0
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	97.91
KOG2816	463	consensus Predicted transporter ADD1 (major facili	97.82
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	97.79
PF07672	267	MFS_Mycoplasma: Mycoplasma MFS transporter; InterP	97.73
KOG3880	409	consensus Predicted small molecule transporter inv	97.58
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	97.33
PF12832	77	MFS_1_like: MFS_1 like family	97.33
PF05978	156	UNC-93: Ion channel regulatory protein UNC-93; Int	97.3
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	97.26
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	97.22
KOG2563	480	consensus Permease of the major facilitator superf	97.2
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	97.13
KOG0637	498	consensus Sucrose transporter and related proteins	97.08
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	96.75
PF01733	309	Nucleoside_tran: Nucleoside transporter; InterPro:	96.45
COG0477	338	ProP Permeases of the major facilitator superfamil	96.45
KOG1479	406	consensus Nucleoside transporter [Nucleotide trans	96.43
KOG2601	503	consensus Iron transporter [Inorganic ion transpor	96.3
KOG3626	735	consensus Organic anion transporter [Secondary met	96.12
PF06779	85	DUF1228: Protein of unknown function (DUF1228); In	96.1
PRK03612	521	spermidine synthase; Provisional	95.84
KOG3098	461	consensus Uncharacterized conserved protein [Funct	95.83
KOG1479	406	consensus Nucleoside transporter [Nucleotide trans	95.73
PF03219	491	TLC: TLC ATP/ADP transporter; InterPro: IPR004667	95.48
PRK03612	521	spermidine synthase; Provisional	95.34
PF06779	85	DUF1228: Protein of unknown function (DUF1228); In	95.22
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	95.15
PF00854	372	PTR2: POT family; InterPro: IPR000109 This entry r	94.73
PF12832	77	MFS_1_like: MFS_1 like family	94.06
KOG3097	390	consensus Predicted membrane protein [Function unk	91.6
PF13000	544	Acatn: Acetyl-coenzyme A transporter 1; InterPro:	91.34
KOG3574	510	consensus Acetyl-CoA transporter [Inorganic ion tr	91.28
KOG1237	571	consensus H+/oligopeptide symporter [Amino acid tr	89.97
TIGR00939	437	2a57 Equilibrative Nucleoside Transporter (ENT).	89.17
PF06912	209	DUF1275: Protein of unknown function (DUF1275); In	85.14
COG5336	116	Uncharacterized protein conserved in bacteria [Fun	83.5
KOG3880	409	consensus Predicted small molecule transporter inv	83.4
PF03547	385	Mem_trans: Membrane transport protein; InterPro: I	81.52

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=100.00  E-value=1.2e-37  Score=264.97  Aligned_cols=352  Identities=16%  Similarity=0.164  Sum_probs=276.3

Q ss_pred             ccccchhhHHHHhhhhcCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhhhhhhhccchhhhhhccCCCCCchhH
Q 014628            2 VGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAW   81 (421)
Q Consensus         2 lg~~i~~~~~g~l~Dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~   81 (421)
                      +.|.++..+.|.++||.+.|+.+..++++.++.+++++++++.+.+.++.+++|..+|.-+|.+...+..|++++|||+.
T Consensus        75 i~YG~sKf~~G~~sDr~npr~fm~~gLilsai~nil~Gfs~s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~  154 (448)
T COG2271          75 ITYGVSKFVMGVLSDRSNPRYFMAFGLILSAIVNILFGFSPSLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKERGTW  154 (448)
T ss_pred             HHHHHHHHHhhhhcccCCCceeehHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccccCce
Confidence            56788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhhHHHhH--HhhhhcchhHHHHHHHHHHHHHHHHHHHhcccccccccCCccccchhhhhhcccccccc
Q 014628           82 LSMFYMCIPTGVALGYVYG--GVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEAS  159 (421)
Q Consensus        82 ~~~~~~~~~~G~~~g~~~~--~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (421)
                      .++++.+.++|..+.|++.  +.+..+.+||..|++.++++++.+++.++..+++|+...-++-++...           
T Consensus       155 ~siWn~shNiGGal~~~~~~la~~~~~~~w~~~f~~pgiiaiival~~~~~~rd~Pqs~GLP~ie~~~~-----------  223 (448)
T COG2271         155 WSIWNTSHNIGGALAPLVALLAFFAFHGGWRAAFYFPGIIAIIVALILLFLLRDRPQSEGLPPIEEYRG-----------  223 (448)
T ss_pred             EEEehhhhhcccchHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhCCCccccCCCCHHHhhc-----------
Confidence            9999999999999999999  888888899999999999999999999888877655433322221110           


Q ss_pred             cCCcccccccchhhhhhhccccchhhhhhhhhhhhhhhHHhhcchhHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhCCcc
Q 014628          160 NLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSN  239 (421)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (421)
                             +..+...++++++....         ...-.+.+++||.+|.+.++..+.+..-+++..|.|.|+.+..+++.
T Consensus       224 -------d~~e~~~~~~~~~~ls~---------~~i~~~YVL~Nk~iW~la~a~vfvYivR~gi~dW~p~YL~e~k~~s~  287 (448)
T COG2271         224 -------DPLEIYEEEKENEGLTA---------WQIFVKYVLKNKLIWLLALANVFVYVVRYGINDWGPLYLSEVKGFSL  287 (448)
T ss_pred             -------CchhhhhhhccCCCccH---------HHHHHHHHHcChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCH
Confidence                   00000000000000000         01235678999999999999999999999999999999999999997


Q ss_pred             chhHH-HhhhhHHHHHHhhhhhHHHhhhccccchhhHHHHHHHHHHHHHHHHHHhhh--hhHHHHHHHHHHHHHHHhccC
Q 014628          240 ADMMF-GGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLS--SLYGFLALFTVGELLVFATQA  316 (421)
Q Consensus       240 ~~~~~-~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~  316 (421)
                      ..... .++.-.++++|++++|+++||+.+.++.  ...+++.+...++.......+  +.+...+++++.|+...+-..
T Consensus       288 ~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~--p~~~i~~~~i~~~~~~~w~~~~~~~~l~~~~l~~iGf~IyGPqm  365 (448)
T COG2271         288 VKANWAISLFEVAGLPGTLLAGWLSDKLFKGRRG--PMALIFMLLITASLVLYWLAPNGSYLLDAILLFIIGFLIYGPQM  365 (448)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccc--hHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHhhHHH
Confidence            66644 3677799999999999999998643221  333344444444444444443  346666777777777777766


Q ss_pred             chhhhhhcccCCchhhHHHHHHHHHHHhhcccCcchhHHHhhhccccchhhhHHHHHHHHHHHHHHH
Q 014628          317 PVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFFLAAGIWF  383 (421)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~  383 (421)
                      .......|..|++..|++.|+...+.+.+|...+....|++.|.+| |...|++..+..+++.++++
T Consensus       366 LiGl~a~e~~pK~AaGtA~Gf~Glf~Yl~Ga~~a~~~~g~i~d~~g-W~g~Fi~~~~~a~l~~lll~  431 (448)
T COG2271         366 LIGLAAAEFVPKKAAGTATGFVGLFAYLIGAALAGLPLGYIADTWG-WDGGFIVLSIAALLAILLLL  431 (448)
T ss_pred             HHHHHHhccccHhhccchhchhhhHHHHhhHHhcCCcceeeEecCC-CcchHHHHHHHHHHHHHHHH
Confidence            6677788999999999999999877777799999989999999865 77788877776666665544

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=100.00  E-value=2e-35  Score=255.21  Aligned_cols=323  Identities=19%  Similarity=0.217  Sum_probs=259.5

Q ss_pred             ccccchhhHHHHhhhhcCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhhhhhhhccchhhhhhccCCCCCchhH
Q 014628            2 VGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAW   81 (421)
Q Consensus         2 lg~~i~~~~~g~l~Dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~   81 (421)
                      +++++++|+...+.||+.||++++..+.++.++++++++++||+.++++|++.|+..|.+++...++..+..|+++|+++
T Consensus        59 l~~ai~ap~l~~lt~r~~Rr~lLl~~l~lFi~~n~l~alAp~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~A  138 (394)
T COG2814          59 LGVALGAPLLALLTGRLERRRLLLGLLALFIVSNLLSALAPSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRA  138 (394)
T ss_pred             HHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhH
Confidence            46788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhhHHHhHHhhhhcchhHHHHHHHHHHHHHHHHHHHhcccccccccCCccccchhhhhhcccccccccC
Q 014628           82 LSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNL  161 (421)
Q Consensus        82 ~~~~~~~~~~G~~~g~~~~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (421)
                      +++...+..++.++|.+++.++.+.+|||+.|++.++++++..+..+..+|  +++.  +++.+..              
T Consensus       139 iaiv~~G~tlA~v~GvPLGt~ig~~~GWR~~F~~ia~l~ll~~~~~~~~lP--~~~~--~~~~~~~--------------  200 (394)
T COG2814         139 LALVFTGLTLATVLGVPLGTFLGQLFGWRATFLAIAVLALLALLLLWKLLP--PSEI--SGSLPGP--------------  200 (394)
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhCC--CccC--CCCCCcc--------------
Confidence            999999999999999999999999999999999999999999988888888  1111  1111000              


Q ss_pred             CcccccccchhhhhhhccccchhhhhhhhhhhhhhhHHhhcchhHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhCCccch
Q 014628          162 NDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNAD  241 (421)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (421)
                                                      .++..+++|+|.++...+..++.....+...+|+..++++..+.+...
T Consensus       201 --------------------------------~~~~~~~l~~p~v~~~l~~t~l~~~g~F~~ftYi~P~L~~v~g~s~~~  248 (394)
T COG2814         201 --------------------------------LRTLLRLLRRPGVLLGLLATFLFMTGHFALYTYIRPFLESVAGFSVSA  248 (394)
T ss_pred             --------------------------------hhHHHHHhcCchHHHHHHHHHHHHcchhhhHHhHHHHHHHccCCCHhH
Confidence                                            122446789999999999999888889999999999999999988765


Q ss_pred             h-HHHhhhhHHHHHHhhhhhHHHhhhccccchhhHHHHHHHHHHH-HHHHHHHhhhhhHHHHHHHHHHHHHHHhccCchh
Q 014628          242 M-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGA-ISCLTAFCLSSLYGFLALFTVGELLVFATQAPVN  319 (421)
Q Consensus       242 ~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (421)
                      . .....++++.++|+.++|++.|| +.+     +.+.....+.. ....+....++.+...+...+.++..........
T Consensus       249 vs~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~-----~~l~~~~~l~a~~~l~l~~~~~~~~~~~~~~~~wg~a~~~~~~~~~  322 (394)
T COG2814         249 VSLVLLAFGIAGFIGNLLGGRLADR-GPR-----RALIAALLLLALALLALTFTGASPALALALLFLWGFAFSPALQGLQ  322 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhccc-cch-----hHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhhhhhhHHH
Confidence            5 44477889999999999999999 555     55554433333 3334444444555555555555555544433344


Q ss_pred             hhhhcccCCchhhHHHHHHHHHHHhhcccCcchhHHHhhhccccchhhhHHHHHHHHHHHHHHH
Q 014628          320 YVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFFLAAGIWF  383 (421)
Q Consensus       320 ~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~  383 (421)
                      ....+ ..|+.++.+.+++...++. |..+|..++|.+.|+.| +....++.+...+++..+.+
T Consensus       323 ~~~a~-~~p~~~~~a~sl~~aa~nl-gia~GA~lGG~v~~~~g-~~~~~~~~a~l~~~a~~~~~  383 (394)
T COG2814         323 TRLAR-LAPDAADLAGSLNVAAFNL-GIALGAALGGLVLDALG-YAATGWVGAALLLLALLLAL  383 (394)
T ss_pred             HHhcc-cCCCchHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhc-hHHHHHHHHHHHHHHHHHHH
Confidence            44444 4468899999999888887 99999999999999955 77777777777666665554

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=100.00  E-value=1.3e-35  Score=276.64  Aligned_cols=334  Identities=11%  Similarity=0.044  Sum_probs=222.0

Q ss_pred             ccccchhhHHHHhhhhcCCchHHHHHHHHHHHHHhhhhhhhhHHH--------HHHHHHHhhhhhhhhccchhhhhhccC
Q 014628            2 VGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWS--------IAICRMLVGVGEASFISLAAPFIDDNA   73 (421)
Q Consensus         2 lg~~i~~~~~g~l~Dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~--------l~~~r~l~G~~~~~~~~~~~~~i~~~~   73 (421)
                      +++.++++++|+++||+|||+++.+++++++++++++++++|+++        ++++|+++|++.|..++...+++.|++
T Consensus        68 l~~~ig~~~~G~l~Dr~Grr~~l~~~~~l~~i~~~~~a~~~~~~~~g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~  147 (490)
T PRK10642         68 LIRPLGGLFFGMLGDKYGRQKILAITIVIMSISTFCIGLIPSYATIGIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYS  147 (490)
T ss_pred             HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhC
Confidence            567899999999999999999999999999999999999999875        889999999999999999999999999


Q ss_pred             CCCCchhHHHHHHHHHHHHhhhHHHhHHhhh--------hcchhHHHHHHHHHHHHHHHHHHHhcccccccccCCccccc
Q 014628           74 PVPQKTAWLSMFYMCIPTGVALGYVYGGVVG--------SHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGK  145 (421)
Q Consensus        74 ~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~--------~~~~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~  145 (421)
                      |+++|+++.++...+..+|..+|+.+...+.        +.+|||++|++.+++.++ .++.....||++++....++.+
T Consensus       148 p~~~Rg~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~~~~~~~gWR~~f~i~~~~~l~-~~~~~~~~~esp~~~~~~~~~~  226 (490)
T PRK10642        148 PDRKRGFMGSWLDFGSIAGFVLGAGVVVLISTIVGEANFLDWGWRIPFFIALPLGII-GLYLRHALEETPAFQQHVDKLE  226 (490)
T ss_pred             CCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhcCccHHHHHHHHHHHHHH-HHHHHHcCCCChhHHHHHHhhh
Confidence            9999999999999988888888887665443        257999999997765543 3333344566543211000000


Q ss_pred             hhhhhhcccccccccCCcccccccchhhhhhhccccchhhhhhhhhhhhhhhHHhhc-chh-HHHHHHHHHHHHHHHHHH
Q 014628          146 AQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQ-EKV-YVVNVLGYIAYNFVIGAY  223 (421)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~  223 (421)
                      ..            ..     +..       .+++             ..+++++++ ++. ........++....++.+
T Consensus       227 ~~------------~~-----~~~-------~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (490)
T PRK10642        227 QG------------DR-----EGL-------QDGP-------------KVSFKEIATKHWRSLLTCIGLVIATNVTYYML  269 (490)
T ss_pred             hh------------cc-----ccc-------cccc-------------cCCHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence            00            00     000       0000             011222332 122 222222234455677788


Q ss_pred             HHHhhHHHHHhhCCccchh-HHHhhhhHHHHHHhhhhhHHHhhhccccchhhHHHHHHHHHHHH-HH--HHHHhhhhhHH
Q 014628          224 SYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAI-SC--LTAFCLSSLYG  299 (421)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~  299 (421)
                      ..|+|.|+++..+.+.... .......++.+++.++.|+++||+|||     +.+........+ ..  +.....++...
T Consensus       270 ~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~  344 (490)
T PRK10642        270 LTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRR-----PFVILGSVALFVLAIPAFILINSNVIGL  344 (490)
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-----HHHHHHHHHHHHHHHHHHHHHhCCCHHH
Confidence            8899999988777765433 333555677888899999999999998     555444332221 11  11112223333


Q ss_pred             HHHHHHHHHHHHHhccCchhhhhhcccCCchhhHHHHHHHHHHHhhcccCcchhHHHhhhccccchhhhHHHHHHHHHHH
Q 014628          300 FLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFFLAA  379 (421)
Q Consensus       300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~  379 (421)
                      ..+..++.+++.+...+....+..+.+|++.|+++.|+.+..... ++.++|.+.+++.+..+++...+.+.....+++.
T Consensus       345 ~~~~~~~~g~~~~~~~g~~~~~~~~~~p~~~Rg~~~g~~~~~~~~-~g~~~p~i~g~l~~~~~~~~~~~~~~~~~~~i~~  423 (490)
T PRK10642        345 IFAGLLMLAVILNCFTGVMASTLPAMFPTHIRYSALAAAFNISVL-VAGLTPTLAAWLVESTQNLMMPAYYLMVVAVIGL  423 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCccchHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHH
Confidence            334444445555555555667778889999999999986555555 4567899999998866554444444443333333

>PRK11663 regulatory protein UhpC; Provisional

Probab=100.00  E-value=4.2e-35  Score=269.40  Aligned_cols=351  Identities=14%  Similarity=0.146  Sum_probs=240.5

Q ss_pred             ccccchhhHHHHhhhhcCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhhhhhhhccchhhhhhccCCCCCchhH
Q 014628            2 VGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAW   81 (421)
Q Consensus         2 lg~~i~~~~~g~l~Dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~   81 (421)
                      +++++++++.|+++||+|||+++.++.++.+++.++++++++++.+++.|++.|++.|...+...+++.|++|+++|+++
T Consensus        69 ~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~  148 (434)
T PRK11663         69 ITYGVSKFVSGIVSDRSNARYFMGIGLIATGIINILFGFSSSLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGW  148 (434)
T ss_pred             HHHHHHHhhhhHHHhhcCCchhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHHHHHH
Confidence            46788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhhHHHhHHhhhhcchhHHHHHHHHHHHHHHHHHHHhcccccccccCCccccchhhhhhcccccccccC
Q 014628           82 LSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNL  161 (421)
Q Consensus        82 ~~~~~~~~~~G~~~g~~~~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (421)
                      +++++.+.++|..+++.+++.+.+.+|||+.|++.+++.++..+...+..||++++...++..++..             
T Consensus       149 ~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~f~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~-------------  215 (434)
T PRK11663        149 WAIWNTAHNVGGALIPLVVGAIALHYGWRYGMMIAGIIAIVVGLFLCWRLRDKPQAMGLPSVGEWRH-------------  215 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHcCCCHhhcCCCCcccccc-------------
Confidence            9999999999999999999999999999999999988776665555555565433211111100000             


Q ss_pred             CcccccccchhhhhhhccccchhhhhhhhhhhhhhhHHhhcchhHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhCCccch
Q 014628          162 NDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNAD  241 (421)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (421)
                       + ..+   ... +.++++       .+.++..+  +..++++.++...+..++.......+..|+|.|+.+..+.+...
T Consensus       216 -~-~~~---~~~-~~~~~~-------~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~  280 (434)
T PRK11663        216 -D-ALE---LAQ-QQEGAG-------LSRKEILT--KYVLLNPYIWLLSFSYVLVYVVRAAINDWGNLYMSETLGVDLVT  280 (434)
T ss_pred             -c-ccc---cch-hccccC-------CChhhhHH--HHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHH
Confidence             0 000   000 000000       00001001  13567888888877777777777788889999998877887654


Q ss_pred             h-HHHhhhhHHHHHHhhhhhHHHhhhccccchhhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhccCchhh
Q 014628          242 M-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNY  320 (421)
Q Consensus       242 ~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (421)
                      . .......++++++.++.|+++||+.+++++................+......+........+..+++..........
T Consensus       281 a~~~~~~~~~~~~~g~~~~g~l~dr~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  360 (434)
T PRK11663        281 ANSAVSMFELGGFIGALVAGWGSDKLFNGNRGPMNLIFAAGILLSVGSLWLMPFASYVMQAACFFTIGFFVFGPQMLIGM  360 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhHHHhccCCccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHhhHHHHHHH
Confidence            4 444667788999999999999998433211111111111111111111111222222222222222222111122344


Q ss_pred             hhhcccCCchhhHHHHHHHHHHHhhcccCcchhHHHhhhccccchhhhHHHHHHHHHHHHHH
Q 014628          321 VCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFFLAAGIW  382 (421)
Q Consensus       321 ~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~  382 (421)
                      ...+..|++.|++++|+.+...+. |.+++|.+.|++.|..| +...+...+++.+++.+..
T Consensus       361 ~~~~~~~~~~~g~~~g~~~~~~~~-g~~~~p~~~g~l~~~~g-~~~~f~~~~~~~~~~~~~~  420 (434)
T PRK11663        361 AAAECSHKEAAGAATGFVGLFAYL-GAALSGYPLAKVLEIWH-WTGFFVVISIAAGISALLL  420 (434)
T ss_pred             HHHhcccHhhHHhHHHHHHHHHHH-HHHHhcccHHHHHHhcc-cHHHHHHHHHHHHHHHHHH
Confidence            567778889999999999877666 99999999999999877 7788877777665555433

>PRK03545 putative arabinose transporter; Provisional

Probab=100.00  E-value=1e-34  Score=263.89  Aligned_cols=321  Identities=16%  Similarity=0.094  Sum_probs=240.9

Q ss_pred             ccccchhhHHHHhhhhcCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhhhhhhhccchhhhhhccCCCCCchhH
Q 014628            2 VGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAW   81 (421)
Q Consensus         2 lg~~i~~~~~g~l~Dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~   81 (421)
                      +++.+++++.|+++||+|||+++..+.++..++++++++++|++.++++|+++|++.+...+...+++.|++|+++|+++
T Consensus        55 ~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~  134 (390)
T PRK03545         55 WVVALMSLPLMLLTSNVERRKLLIGLFVLFIASHVLSALAWNFTVLLISRIGIAFAHAIFWSITASLAIRVAPAGKKAQA  134 (390)
T ss_pred             HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhhH
Confidence            45678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhhHHHhHHhhhhcchhHHHHHHHHHHHHHHHHHHHhcccccccccCCccccchhhhhhcccccccccC
Q 014628           82 LSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNL  161 (421)
Q Consensus        82 ~~~~~~~~~~G~~~g~~~~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (421)
                      ++++..+.++|..++|++++.+.++.|||+.|++.++++++..+..+...|+.++      +++..              
T Consensus       135 ~g~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~~~~~------~~~~~--------------  194 (390)
T PRK03545        135 LSLLATGTALAMVLGLPLGRVIGQYLGWRTTFLAIGGGALITLLLLIKLLPLLPS------EHSGS--------------  194 (390)
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhCCCCCC------CCcch--------------
Confidence            9999999999999999999999999999999999998877766665555454211      00000              


Q ss_pred             CcccccccchhhhhhhccccchhhhhhhhhhhhhhhHHhhcchhHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhCCccch
Q 014628          162 NDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNAD  241 (421)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (421)
                                                      .++.++.+++|.++......++.....+....+.|.++++..+.+...
T Consensus       195 --------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~  242 (390)
T PRK03545        195 --------------------------------LKSLPLLFRRPALVSLYLLTVVVVTAHFTAYSYIEPFVQQVAGLSENF  242 (390)
T ss_pred             --------------------------------HHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccH
Confidence                                            012445677888776655555555555556677888888877777554


Q ss_pred             h-HHHhhhhHHHHHHhhhhhHHHhhhccccchhhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhccCchhh
Q 014628          242 M-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNY  320 (421)
Q Consensus       242 ~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (421)
                      . .......++++++.++.+++.||+++|     ....................++.+...+...+.+++.....+....
T Consensus       243 ~~~~~~~~~~~~~~g~~~~g~l~dr~~~~-----~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~  317 (390)
T PRK03545        243 ATLLLLLFGGAGIIGSVLFSRLGNRHPSG-----FLLIAIALLLVCLLLLLPAANSEWHLSVLSIFWGIAIMCIGLAMQV  317 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhccchh-----HHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhcchHHHHH
Confidence            4 344566778899999999999999876     4443333333333333333444555555555566655444444556


Q ss_pred             hhhcccCCchhhHHHHHHHHHHHhhcccCcchhHHHhhhccccchhhhHHHHHHHHHHHHHH
Q 014628          321 VCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFFLAAGIW  382 (421)
Q Consensus       321 ~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~  382 (421)
                      .+.+.. ++.+++++|+.+...+. |..+||.+.|++.|..| ++..+...+.+.+++.+..
T Consensus       318 ~~~~~~-~~~~~~~~g~~~~~~~~-g~~~G~~~~G~~~~~~g-~~~~~~~~~~~~~~~~~~~  376 (390)
T PRK03545        318 KVLKLA-PDATDVAMALFSGIFNI-GIGAGALLGNQVSLHLG-LSSIGYVGAALALAALVWS  376 (390)
T ss_pred             HHHHhC-CCcHHHHHHHHHHHHHH-HHHHHHHHHHHHHhccC-hhHHHHHHHHHHHHHHHHH
Confidence            666665 46889999999666665 88899999999999876 6677776666655555443

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=100.00  E-value=4.3e-35  Score=261.43  Aligned_cols=325  Identities=12%  Similarity=0.019  Sum_probs=230.5

Q ss_pred             ccccchhhHHHHhhhhcCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhhhhhhhccchhhhhhccCCCCCchhH
Q 014628            2 VGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAW   81 (421)
Q Consensus         2 lg~~i~~~~~g~l~Dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~   81 (421)
                      +++.+++++.|+++||+|||+++..+......+.+....++|++.++++|+++|++.+. .+.....++|++|+++|+++
T Consensus        37 ~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~~~-~~~~~~~~~~~~~~~~r~~a  115 (368)
T TIGR00903        37 AAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAGRLLDPFNYEWLLACQLLAALGQPF-LLNAFAPAASQIREERRDLV  115 (368)
T ss_pred             HHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhHhHH-HHHHHHHHHHHcCHHHHHHH
Confidence            57889999999999999999987666555545443333347999999999999999986 55666677999999999999


Q ss_pred             HHHHHHHHHHHhhhHHHhHHhhhhcchhHHHHHHHHHHHHHHHHHHHhcccccccccCCccccchhhhhhcccccccccC
Q 014628           82 LSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNL  161 (421)
Q Consensus        82 ~~~~~~~~~~G~~~g~~~~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (421)
                      +++.+.+..+|.++++++++.+.+++|||+.|++.++++++..++.++..||++++.+  ++.+ .              
T Consensus       116 ~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~f~~~~~l~~~~~~~~~~~lp~~p~~~~--~~~~-~--------------  178 (368)
T TIGR00903       116 ISLLSFAMYLGIIFALAAGLKIYTAGGLQLLIIPIAAVAAAGIILVLAALPALPFQAA--EGFG-F--------------  178 (368)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHcCCCCCCCC--CCcc-h--------------
Confidence            9999999999999999999999999999999999999888887777777787543210  0000 0              


Q ss_pred             CcccccccchhhhhhhccccchhhhhhhhhhhhhhhHHhhcchhHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhCCccch
Q 014628          162 NDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNAD  241 (421)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (421)
                                +                   +..+++++++++|.+|...+..++....++++.+|+|.|+++ .+.+...
T Consensus       179 ----------~-------------------~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~wlp~~L~~-~g~s~~~  228 (368)
T TIGR00903       179 ----------K-------------------DAVKEFGALAGRKDLWIIGAILGFGVALFDNLAIWLEAALRP-AGLEDIA  228 (368)
T ss_pred             ----------H-------------------HHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCChHH
Confidence                      0                   001235678899999999999999999999999999999976 4465433


Q ss_pred             hHHHhhhhHHHHHHhhhhhHHHhhhccccchhhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhccCchhhh
Q 014628          242 MMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYV  321 (421)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  321 (421)
                      .....+..+   .+.+..++++||..|+..+. ...........+.+.......+....+...++.+++.....+..+.+
T Consensus       229 ~~~~~l~~~---~g~~g~~~~~d~~~r~~~r~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  304 (368)
T TIGR00903       229 GDAVALAIL---AGLIGVAVIPDRVARAGLRS-IYIRAAALLIAAFFLALAFELNRLALFAFIGIAGLLMLPAYAIIMDW  304 (368)
T ss_pred             HHHHHHHHH---HHHHHHHHhhHHhhhhhhHH-HHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHhhhhhHHHHHHH
Confidence            233333344   34444688999987653221 22222222223333222223333333444455555555666667788


Q ss_pred             hhcccCCchhhHHHHHHHHHHHhhcccCcchhHHHhhhccccchhhhHHHHHHHHHHHHHH
Q 014628          322 CLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFFLAAGIW  382 (421)
Q Consensus       322 ~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~  382 (421)
                      .+|.+|++.|+++.|+.+...+. +++.+|.+.+.+..  + ....|.+.+...+++.+..
T Consensus       305 ~~~~~p~~~rgt~~G~~~~~g~~-~~~~~~~~~~~~~~--~-~~~~f~~~~~~~~i~~~~~  361 (368)
T TIGR00903       305 IGKFCDKELHGKAAGAIGFTSRA-ISVALALAAMLFIS--S-AEAYFTFLAILITIAFAIA  361 (368)
T ss_pred             HHHhcchhhcCcccchhhHHHHH-HHHHHHHHHHHHhc--C-HHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999877777 77788888887774  3 4456666665555554443

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=100.00  E-value=3.4e-35  Score=267.78  Aligned_cols=348  Identities=16%  Similarity=0.192  Sum_probs=237.4

Q ss_pred             ccccchhhHHHHhhhhcCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhhhhhhhccchhhhhhccCCCCCchhH
Q 014628            2 VGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAW   81 (421)
Q Consensus         2 lg~~i~~~~~g~l~Dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~   81 (421)
                      +++++++++.|+++||+|||+++..++++++++++++++++|++.+++.|+++|++.+...+....++.|++|+++|+++
T Consensus        54 ~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~  133 (412)
T TIGR02332        54 AAYVICGIPSNIMLAIIGARRWIAGIMVLWGIASTATMFATGPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARA  133 (412)
T ss_pred             HHHHHHHhhHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHH
Confidence            56788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhhHHHhHHhhhh------cchhHHHHHHHHHHHHHHHHHHHhcccccccccCCccccchhhhhhcccc
Q 014628           82 LSMFYMCIPTGVALGYVYGGVVGS------HLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEG  155 (421)
Q Consensus        82 ~~~~~~~~~~G~~~g~~~~~~l~~------~~~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~  155 (421)
                      +++++.+.++|.++++.+++++.+      ..|||+.|++.++++++..++.+++.||++++.+-..+.+..   ...+.
T Consensus       134 ~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~l~~~~~~~~~~~~~p~~~~~l~~~~~~---~~~~~  210 (412)
T TIGR02332       134 NALFMIAMPVTMALGLILSGYILALDGLMALKGWQWLFLLEGFPSVILGVMTWFWLDDSPDKAKWLDEEDKK---ALKEM  210 (412)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccchhHHHHHHHHHHHHHHHHHhhccCCCcccCCCCCHHHHH---HHHHH
Confidence            999999999999999999998764      469999999999888877777777777755321100000000   00000


Q ss_pred             cccccCCcccccccchhhhhhhccccchhhhhhhhhhhhhhhHHhhcchhHHHHHHHHHHHHHHHHHHHHHhhHHHHHh-
Q 014628          156 SEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNI-  234 (421)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  234 (421)
                      .+....+  .++ .++   .. .+..         ......++.++ +|.++...+..++....++.+.+|+|.++++. 
T Consensus       211 ~~~~~~~--~~~-~~~---~~-~~~~---------~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~  273 (412)
T TIGR02332       211 IDNDQLT--LEQ-PEG---AF-AHAA---------MPQRSMLREIF-TPAIMLYTLAYFCLTNTLSAINIWTPQILQSFN  273 (412)
T ss_pred             HHhcccc--ccc-ccc---cc-cccc---------ccHHHHHHHhc-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            0000000  000 000   00 0000         00011233443 47777777777777888888999999999874 


Q ss_pred             hCCccchh-HHHhhhhHHHHHHhhhhhHHHhhhccccchhhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHh
Q 014628          235 YHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVFA  313 (421)
Q Consensus       235 ~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  313 (421)
                      .+.+.... .+.....++.+++.++.|+++||+++|+    ...............+....++........++..++...
T Consensus       274 ~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr~~~r~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  349 (412)
T TIGR02332       274 QGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDRLKERK----HHTALPYLFAAAGWLLASATDHNLIQLLGIIMASMGSFS  349 (412)
T ss_pred             CCCcHHHhHHHhhHHHHHHHHHHHHHHHHhcccCccH----HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhh
Confidence            34443333 4457778889999999999999998762    222222222222222222222222222222222222222


Q ss_pred             ccCchhhhhhcccCCchhhHHHHHHHHHHHhhcccCcchhHHHhhhccccchhhhHHHHHH
Q 014628          314 TQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSI  374 (421)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~  374 (421)
                      ..+.......+..|+++|+++.|+.+...+. |++++|.+.|.+.|..|+|...+.+++++
T Consensus       350 ~~~~~~~~~~~~~~~~~~~~a~g~~~~~~~~-g~~~~p~~~g~i~~~~g~~~~~~~~~~~~  409 (412)
T TIGR02332       350 AMAIFWTTPDQSISLQARAIAIAVINATGNI-GSALSPFLIGILKDATGSFNSGLWFVAAL  409 (412)
T ss_pred             hhhHHHhhcccccchHHHHHHHHHHHHhhhh-hhhhhhhhcccccccCCCCchhHHHHHHH
Confidence            2222233345567889999999999877776 99999999999999988888877766554

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=100.00  E-value=7.2e-35  Score=276.31  Aligned_cols=371  Identities=15%  Similarity=0.135  Sum_probs=254.6

Q ss_pred             ccccchhhHHHHhhhhcCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhhhhhhhccchhhhhhccCCCCCchhH
Q 014628            2 VGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAW   81 (421)
Q Consensus         2 lg~~i~~~~~g~l~Dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~   81 (421)
                      +|++++++++|+++||+|||++++++++++++++++++++++++.++++|++.|++.++..+...+++.|++|+++|++.
T Consensus       213 lG~iiG~li~G~LsDR~GRR~~lii~lil~~i~~ll~afa~s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~Rg~~  292 (742)
T TIGR01299       213 LGMMVGAFFWGGLADKLGRKQCLLICLSVNGFFAFFSSFVQGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEH  292 (742)
T ss_pred             HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
Confidence            67889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhhHHHhHHhhhhc-------------chhHHHHHHHHHHHHHHHHHHHhcccccccccCCccccchhh
Q 014628           82 LSMFYMCIPTGVALGYVYGGVVGSH-------------LNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQV  148 (421)
Q Consensus        82 ~~~~~~~~~~G~~~g~~~~~~l~~~-------------~~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~  148 (421)
                      ++++..+..+|.++++.++..+...             .+||+.+++.+++.++.. +..+++||++++...+.+.+  .
T Consensus       293 ~g~~~~~~~iG~ila~~la~~il~~~G~~~~~g~~~~~~gWR~l~~i~~lp~ll~l-l~~~~lPESPrwL~~~gr~~--e  369 (742)
T TIGR01299       293 LSWLCMFWMIGGIYAAAMAWAIIPHYGWSFQMGSAYQFHSWRVFVIVCAFPCVFAI-GALTFMPESPRFFLENGKHD--E  369 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccchhccccccccccHHHHHHHHHHHHHHHH-HHHHHcCCCHHHHHHCCCHH--H
Confidence            9999999999999999888766543             369999998887765544 44556699988743222211  1


Q ss_pred             hhhcccccccccCCcc--cccc-----cchhhhhh-----hccccc-----hhhhhhhhhhhhhhhHHhhcchh---HHH
Q 014628          149 VASVSEGSEASNLNDH--VSED-----ISDQASER-----SIKSIG-----ESRFLNQLSQFSQDTKVLLQEKV---YVV  208 (421)
Q Consensus       149 ~~~~~~~~~~~~~~~~--~~~~-----~~~~~~~~-----~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~---~~~  208 (421)
                      ......++...+....  ..+.     .+.....+     ......     ..+........+.+++.+++.+.   .+.
T Consensus       370 A~~iL~~i~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lf~~~~~~~tl~  449 (742)
T TIGR01299       370 AWMILKLIHDTNMRAKGHPEKVFSVNHIKTIHQEDELIEIESDTGTWYQRCFVRALSEGGGIWGNFLRCFNPEVREITIK  449 (742)
T ss_pred             HHHHHHHHhcCCCCCcCchhHHHHHHHHHHhhhhhhhhcccccccchhhcchhhhhhhhhhHHHHHHHHcCccHHHHHHH
Confidence            1111111211111000  0000     00000000     000000     00001111223334555655443   344


Q ss_pred             HHHHHHHHHHHHHHHHHHhhHHHHHh----h-------------------------------------CC-----c----
Q 014628          209 NVLGYIAYNFVIGAYSYWGPKAGYNI----Y-------------------------------------HM-----S----  238 (421)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~-------------------------------------~~-----~----  238 (421)
                      +.+.+++..+.++++..|+|.++.+.    +                                     +.     .    
T Consensus       450 l~~~wf~~~~~yygl~~w~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  529 (742)
T TIGR01299       450 LMGVWFTLSFGYYGLSVWFPDMIKHLQADDYAALTKNFPGDKVAHFSFNFTLENQIHRGGEYDNDKFIGLKFKSVSFEDS  529 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccchhccccccchhhhhccccccccchhhcccccccccccc
Confidence            55567778888999999999875441    0                                     00     0    


Q ss_pred             ------------------------------------------------------------c-----chhHHHhhhhHHHH
Q 014628          239 ------------------------------------------------------------N-----ADMMFGGVTIVCGI  253 (421)
Q Consensus       239 ------------------------------------------------------------~-----~~~~~~~~~~~~~~  253 (421)
                                                                                  .     .......+..++.+
T Consensus       530 ~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~l~~l~~i  609 (742)
T TIGR01299       530 LFEECTFDDVTSSNTFFKNCTFIDTLFENTDFEEYKFIDSEFQNCSFLHNKEGCPIDFDGDDEGAYMIYFVNFLGTLAVL  609 (742)
T ss_pred             cccccceeeccccchhhhccchhhhhccccchhhhhhhhhhhhhccccccCCccCccCCccchhHHHHHHHHHHHHHHHH
Confidence                                                                        0     00112345567889


Q ss_pred             HHhhhhhHHHhhhccccchhhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhccCchhhhhhcccCCchhhH
Q 014628          254 VGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRAL  333 (421)
Q Consensus       254 ~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  333 (421)
                      ++.+++++++||+|||     +++..+.++.++.+++.....+....+++.++.+++.+..++....++.|.+|++.|++
T Consensus       610 ~G~il~g~L~Dr~GRr-----~~l~~~~~lsai~~ll~~~~~s~~~ll~~~~l~g~~~~~~~~~~~a~~aEl~Pt~~Rgt  684 (742)
T TIGR01299       610 PGNIVSALLMDKIGRL-----RMLAGSMVLSCISCFFLSFGNSESAMIALLCLFGGLSIAAWNALDVLTVELYPSDKRAT  684 (742)
T ss_pred             HHHHHHHHHHHHhCCH-----HHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHH
Confidence            9999999999999998     77777777777666665555555555555566677777777888899999999999999


Q ss_pred             HHHHHHHHHHhhcccCcchhHHHhhhccccchhhhHHHHHHHHHHHHHHH
Q 014628          334 SMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFFLAAGIWF  383 (421)
Q Consensus       334 ~~g~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~  383 (421)
                      ++|+.+...+. |.+++|.+.+.+.+..  ...++++++++.++++++.+
T Consensus       685 a~Gi~~~~~rl-Gaiigp~i~g~L~~~~--~~~pf~i~a~~lll~~ll~~  731 (742)
T TIGR01299       685 AFGFLNALCKA-AAVLGILIFGSFVGIT--KAAPILFASAALACGGLLAL  731 (742)
T ss_pred             HHHHHHHHHHH-HHHHHHHHHHHHHHhh--hHHHHHHHHHHHHHHHHHHH
Confidence            99999766666 9999999999887742  34566666655555444433

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=100.00  E-value=1.5e-34  Score=265.82  Aligned_cols=324  Identities=15%  Similarity=0.100  Sum_probs=218.9

Q ss_pred             cccchhhHHHHhhhhcCCchHHHHHHHHHHHHHhhhhhhhhHH--------HHHHHHHHhhhhhhhhccchhhhhhccCC
Q 014628            3 GLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFW--------SIAICRMLVGVGEASFISLAAPFIDDNAP   74 (421)
Q Consensus         3 g~~i~~~~~g~l~Dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~--------~l~~~r~l~G~~~~~~~~~~~~~i~~~~~   74 (421)
                      +..++++++|+++||+|||+++..++++++++++++++++++.        .++++|+++|++.|..++...++++|++|
T Consensus        75 ~~~ig~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p  154 (432)
T PRK10406         75 MRPIGGWLFGRIADKHGRKKSMLISVCMMCFGSLVIACLPGYETIGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAV  154 (432)
T ss_pred             HHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCC
Confidence            4458999999999999999999999999999999999998874        58899999999999999999999999999


Q ss_pred             CCCchhHHHHHHHHHHHHhhhHHHhHHhhh--------hcchhHHHHHHHHHHHHHHHHHHHhcccccccccCCccccch
Q 014628           75 VPQKTAWLSMFYMCIPTGVALGYVYGGVVG--------SHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKA  146 (421)
Q Consensus        75 ~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~--------~~~~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~  146 (421)
                      +++|+++.++.+.+...|..+++.+...+.        +.+|||++|++.++++++... .....||+++.    ++ + 
T Consensus       155 ~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~F~i~~~~~ll~~~-~~~~~~e~~~~----~~-~-  227 (432)
T PRK10406        155 EGRKGFYASFQYVTLIGGQLLALLVVVVLQQTLEDAELREWGWRIPFALGAVLAVVALW-LRRQLDETSQQ----ET-R-  227 (432)
T ss_pred             CCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHHHHH-HHhcCCCCchH----HH-h-
Confidence            999999999999999889888887765543        257999999998776654322 22222332110    00 0 


Q ss_pred             hhhhhcccccccccCCcccccccchhhhhhhccccchhhhhhhhhhhhhhhHHhhcchhHHHHHHHHHH-HHHHHHHHHH
Q 014628          147 QVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIA-YNFVIGAYSY  225 (421)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  225 (421)
                      .                             .++              ..++++++++++.+...+...+ ....++.+..
T Consensus       228 ~-----------------------------~~~--------------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (432)
T PRK10406        228 A-----------------------------LKE--------------AGSLKGLWRNRRAFIMVLGFTAAGSLCFYTFTT  264 (432)
T ss_pred             h-----------------------------hcc--------------cccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            0                             000              0124456677777765555444 3566778889


Q ss_pred             HhhHHHHHhhCCccchh-HHHhhhhHHHHHHhhhhhHHHhhhccccchhhHHHHHHHHHHHHHHH-HH--Hh-hhhhHHH
Q 014628          226 WGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCL-TA--FC-LSSLYGF  300 (421)
Q Consensus       226 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~-~~~~~~~  300 (421)
                      |+|.|+++..+.+..+. ....+..+...++.++.|+++||++||     +.+.....+...... ..  .. .++....
T Consensus       265 ~lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~grr-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  339 (432)
T PRK10406        265 YMQKYLVNTAGMHANVASGIMTAALFVFMLIQPLIGALSDKIGRR-----TSMLCFGSLAALFTVPILSALQNVSSPYAA  339 (432)
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCch-----HHHHHHHHHHHHHHHHHHHHHHcCCcHHHH
Confidence            99999988777775444 334555666678888889999999988     444433332222211 11  11 1122222


Q ss_pred             HHHHHHHHHHHHhccCchhhhhhcccCCchhhHHHHHHHHHHHhhcccCcchhHHHhhhccccchhhhHHHHHHHHHHHH
Q 014628          301 LALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFFLAAG  380 (421)
Q Consensus       301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~  380 (421)
                      +....+..++.+...+....+..|.+|++.|+++.|+.+...+.+.+...|.+.+.+ +..|.+...+++.+...+++.+
T Consensus       340 ~~~~~~~~~~~~~~~~~~~~~~~e~fp~~~r~t~~g~~~~~g~~~~g~~~p~~~~~l-~~~g~~~~~~~~~~~~~~i~~~  418 (432)
T PRK10406        340 FGLVMCALLIVSFYTSISGILKAEMFPAQVRALGVGLSYAVANALFGGSAEYVALSL-KSIGMETAFFWYVTLMAVVAFL  418 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCCCCccchhhhHHHHHHHHHHHhHHHHHHHHH-HHhCCCcHHHHHHHHHHHHHHH
Confidence            222222223333333445677889999999999999997766654344477777744 5556565555555544444444


Q ss_pred             HH
Q 014628          381 IW  382 (421)
Q Consensus       381 ~~  382 (421)
                      ..
T Consensus       419 ~~  420 (432)
T PRK10406        419 VS  420 (432)
T ss_pred             HH
Confidence            33

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=100.00  E-value=3.8e-35  Score=272.27  Aligned_cols=348  Identities=16%  Similarity=0.115  Sum_probs=242.6

Q ss_pred             ccccchhhHHHHhhhhcCCchHHHHHHHHHHHHHhhhhh-----hhhHHHHHHHHHHhhhhhhhhccchhhhhhccCCCC
Q 014628            2 VGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGS-----SFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVP   76 (421)
Q Consensus         2 lg~~i~~~~~g~l~Dr~Grr~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~   76 (421)
                      +++++++++.|+++||+|||+++..++++++++.+..++     +++++.+++.|+++|++.+...|...++++||+|++
T Consensus        75 ~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~  154 (467)
T PRK09556         75 ITYGVGKTLVGYYADGKNTKQFLPFLLILSAICMLGFGASLGSGSVSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRR  154 (467)
T ss_pred             HHHHHHHhhhhhHhhccCccchHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhccchHHHHHHHHHcCcc
Confidence            567899999999999999999999988888877766654     689999999999999999999999999999999999


Q ss_pred             CchhHHHHHHHHHHHHhhhHHHhHHhhhhcc---hhHHHHHHHHHHHHHHHHHHHhcccccccccCCccccchhhhhhcc
Q 014628           77 QKTAWLSMFYMCIPTGVALGYVYGGVVGSHL---NWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVS  153 (421)
Q Consensus        77 ~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~---~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~  153 (421)
                      +|+++++++..+.++|.++++.+..++.+..   +||..|.+.++++++.+++.+++.++.+++.+..++      ++. 
T Consensus       155 ~rg~a~gi~~~~~~lG~~l~~~i~~~~~~~~~~~~~~~~f~~~g~~~~~~~i~~~~~~~~~p~~~~~~~~------~~~-  227 (467)
T PRK09556        155 KRGRFLGFWNISHNLGGAGAGGVALWGANYFFDGHVIGMFIFPSIIALIIGFIGLRYGSDSPEELGWGKA------EEI-  227 (467)
T ss_pred             ceeeeEEeeecccchhhhHHHHHHHHHHHhhccCcchhHHHHHHHHHHHHHHHHHHhCCCChhhcCCCCh------hhc-
Confidence            9999999999999999999999987776543   699999998888887777766665543322110000      000 


Q ss_pred             cccccccCCcccccccchhhhhhhccccchhhhhhhhhhhhhh-hHHhhcchhHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 014628          154 EGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQD-TKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGY  232 (421)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (421)
                        .++         ...++....+.++   .    .   ..+. .+..+++|.+|...+..++......+..+|+|.|++
T Consensus       228 --~~~---------~~~~~~~~~~~~~---~----~---~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~yl~  286 (467)
T PRK09556        228 --FGE---------PISEEDKETESTD---M----T---KWQIFVEYVLKNPVIWLLCFANIFLYIVRIGIDNWSPVYAF  286 (467)
T ss_pred             --ccC---------ccchhhhcccccc---C----c---HHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              000         0000000000000   0    0   0011 223678999999888888888888888999999999


Q ss_pred             HhhCCccchh-HHHhhhhHHHHHHhhhhhHHHhhhccccchhhHHHHHHHHHHHHH--HHHHHhhhhhHHHHHHHHHHHH
Q 014628          233 NIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAIS--CLTAFCLSSLYGFLALFTVGEL  309 (421)
Q Consensus       233 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~  309 (421)
                      +.++.+..+. .......++.+++.++.|+++||+++|     +............  .+.....++.+...+..++.++
T Consensus       287 ~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~  361 (467)
T PRK09556        287 QELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLANGR-----RALVACIALALIIFTLGVYQHATSEYMYLASLFALGF  361 (467)
T ss_pred             HccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-----chHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence            9888886554 444667788999999999999999987     3332222221111  1112222233333333444443


Q ss_pred             HHHhccCchhhhhhcccCCchhhHHHHHHHHHHHhhcccCcchhHHHhhh------------ccccchhhhHHHHHHHHH
Q 014628          310 LVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQD------------HVNNWRKTTLALTSIFFL  377 (421)
Q Consensus       310 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~------------~~g~~~~~~~~~~~~~~~  377 (421)
                      +.............|.+|++.++++.|+.+...+..|..++|.+.|++.|            ..+ |...|.+..++.++
T Consensus       362 ~~~~~~~~~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~~-~~~~f~~~~~~~~~  440 (467)
T PRK09556        362 LVFGPQLLIGVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIADPTKNGTPIFGYTLTG-WAGTFAALDIAAIG  440 (467)
T ss_pred             HHhhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhcccccccccccccccC-hHHHHHHHHHHHHH
Confidence            33222222335666889999999999999877776577889999999999            334 88888777666666


Q ss_pred             HHHHHH
Q 014628          378 AAGIWF  383 (421)
Q Consensus       378 ~~~~~~  383 (421)
                      +.+..+
T Consensus       441 ~~~~~~  446 (467)
T PRK09556        441 CICLMA  446 (467)
T ss_pred             HHHHHH
Confidence            655544

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=100.00  E-value=3e-36  Score=258.80  Aligned_cols=326  Identities=37%  Similarity=0.592  Sum_probs=249.7

Q ss_pred             ccccchhhHHHHhhhhcCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhhhhhhhccchhhhhhccCCCCCchhH
Q 014628            2 VGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAW   81 (421)
Q Consensus         2 lg~~i~~~~~g~l~Dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~   81 (421)
                      +.+.+++|+.|+++|||+||+++.+|..+|.++.+.+++++.||++.++|.+.|+|++.+.|.++++++|.+|.++|+++
T Consensus        79 v~~~i~sPl~gyLadryNR~~v~~vG~~iW~~Av~~~~fs~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~  158 (493)
T KOG1330|consen   79 VVFMIASPLFGYLADRYNRKRVIAVGIFIWTLAVFASGFSNHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRV  158 (493)
T ss_pred             HHHHHHHHHHHHHHhhcCcceEEeeHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHH
Confidence            46788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhhHHHhHHhhhhcch-hHHHHHHHHHHHHHHHHHHHhcccccccccCCccccchhhhhhccccccccc
Q 014628           82 LSMFYMCIPTGVALGYVYGGVVGSHLN-WRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASN  160 (421)
Q Consensus        82 ~~~~~~~~~~G~~~g~~~~~~l~~~~~-wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (421)
                      +++++.+..+|..+|.+.+..+.++.+ |||.|+..++++++.+++.+++.+|..+..  .++.+....           
T Consensus       159 ~~ify~~ipvGsglG~vvgs~va~~~~~Wr~af~~~avl~vi~~~L~~~f~~eP~rga--~~~~~~~~~-----------  225 (493)
T KOG1330|consen  159 LGIFYFAIPVGSGLGYVVGSVVASLTFWWRWAFRGSAVLGVIVGLLVFLFVREPERGA--RDEVDGENK-----------  225 (493)
T ss_pred             HHHhhhhcccccceeEEeeeeeccCccceEEEEEeehHHHHHHHHHHHhhccCccccc--ccccccCCc-----------
Confidence            999999999999999999999988766 999999999999999999999887644321  111100000           


Q ss_pred             CCcccccccchhhhhhhccccchhhhhhhhhhhhhhhHHhhcchhHHHHHHHHHHHHHHHHHHHHHhhHHHHHhh---CC
Q 014628          161 LNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIY---HM  237 (421)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~  237 (421)
                                    ..           ....+.+++.+.+.+++.+....+......+....+..|.|.+....+   +.
T Consensus       226 --------------~~-----------~~~ts~~kDl~~l~~~~v~v~~sl~~~a~~fv~Gs~sww~p~~~~~~~~~~~~  280 (493)
T KOG1330|consen  226 --------------MV-----------KPFTSVWKDLKVLAKIKVFVLSSLGIIAAQFVIGSLSWWAPAFIYYSYELIGF  280 (493)
T ss_pred             --------------CC-----------CCccchHHHHHHHHccCceeeehHHHHHHHHhccccchhhhhHHHHHHHHhCC
Confidence                          00           111233566777788888888888888888888888888888665433   22


Q ss_pred             c-cchhHHHhhhhHHHHHHhhhhhHHHhhhccccchhhHH-----HHHHHHHHHHHHHH-HHh--hhhhHHHHHHHHHHH
Q 014628          238 S-NADMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKL-----LSAATFLGAISCLT-AFC--LSSLYGFLALFTVGE  308 (421)
Q Consensus       238 ~-~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~-----~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~  308 (421)
                      + .....+..+...++.+|.+.+|.++||+.++.++..+.     .........+.++. ...  ..+.+..++++++.-
T Consensus       281 ~~~~~~ifg~vt~~~G~lGvl~Ggiisd~~~~~~~~~~~~~~~q~~~~~g~~~s~~~L~~~~~~~~~s~~~~~il~~~g~  360 (493)
T KOG1330|consen  281 DHNATLIFGGVTCAGGSLGVLFGGIISDKLSRIFPNSGTLRASQLSAALGAPLSIPFLFLFPAFTSSSMIFGLILFLVGE  360 (493)
T ss_pred             ccccchhhhhHHHhhchhhheehHHHHHHHHHhcccccchhHHHHHHhhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence            3 24456678888999999999999999976643331111     11111111111111 111  123334444444444


Q ss_pred             HHHHhccCchhhhhhcccCCchhhHHHHHHHHHHHhhcccCcchhHHHhhhccccch
Q 014628          309 LLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWR  365 (421)
Q Consensus       309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~g~~~  365 (421)
                      ......+.+...+..+.+|++.|.++.++...+...+|...+|.+.|.+.|+.-++.
T Consensus       361 ~~~~~~~a~n~~i~l~vV~p~~Rt~a~a~~~~~~h~fgd~~~p~ivGilsd~l~g~~  417 (493)
T KOG1330|consen  361 TISWFNWATNNPIFLEVVPPSRRTTAYALDTVFEHIFGDAASPYIVGILSDKLRGYK  417 (493)
T ss_pred             HHHhcccccccceeeEecCcccccHHHHHHHHHHHHhccCCCcceehhHHHHhhCCC
Confidence            555566777788899999999999999999999999999999999999999876565

>PRK09952 shikimate transporter; Provisional

Probab=100.00  E-value=5.6e-34  Score=261.89  Aligned_cols=333  Identities=12%  Similarity=0.074  Sum_probs=227.7

Q ss_pred             ccccchhhHHHHhhhhcCCchHHHHHHHHHHHHHhhhhhhhhHH--------HHHHHHHHhhhhhhhhccchhhhhhccC
Q 014628            2 VGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFW--------SIAICRMLVGVGEASFISLAAPFIDDNA   73 (421)
Q Consensus         2 lg~~i~~~~~g~l~Dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~--------~l~~~r~l~G~~~~~~~~~~~~~i~~~~   73 (421)
                      ++..+++++.|+++||+|||+++..++++++++++++++++++.        .++++|+++|++.|..++....++.|++
T Consensus        75 ~~~~~g~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~  154 (438)
T PRK09952         75 LFRPLGGVVFGHFGDRLGRKRMLMLTVWMMGIATALIGLLPSFSTIGWWAPVLLVTLRAIQGFAVGGEWGGAALLAVESA  154 (438)
T ss_pred             HHHhhHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhC
Confidence            34568889999999999999999999999999999999999987        4888999999999999999999999999


Q ss_pred             CCCCchhHHHHHHHHHHHHhhhHHHhHHhhh--------hcchhHHHHHHHHHHHHHHHHHHHhcccccccccCCccccc
Q 014628           74 PVPQKTAWLSMFYMCIPTGVALGYVYGGVVG--------SHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGK  145 (421)
Q Consensus        74 ~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~--------~~~~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~  145 (421)
                      |+|+|++..+..+.+..+|.++++.+...+.        +.+|||++|++.+++.++. +......||++++.+.+++.+
T Consensus       155 p~~~rg~~~~~~~~g~~~G~~l~~~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~l~~-~~l~~~~~es~~~~~~~~~~~  233 (438)
T PRK09952        155 PKNKKAFYSSGVQVGYGVGLLLSTGLVSLISMMTTDEQFLSWGWRIPFLFSIVLVLIA-LWVRNGMEESAEFEQQQHEQA  233 (438)
T ss_pred             CCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhccChHHHHHHHHHHHHHH-HHHHHhCCCChhHHHHHhhcc
Confidence            9999999999999999999999887776654        2579999999887764332 222222244321100000000


Q ss_pred             hhhhhhcccccccccCCcccccccchhhhhhhccccchhhhhhhhhhhhhhhHHhhcchhHHHHHH-HHHHHHHHHHHHH
Q 014628          146 AQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVL-GYIAYNFVIGAYS  224 (421)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~  224 (421)
                                                    +.+++             ....+.++++|+.+.... ..++.....+...
T Consensus       234 ------------------------------~~~~~-------------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  270 (438)
T PRK09952        234 ------------------------------AAKKR-------------IPVIEALLRHPGAFLKIIALRLCELLTMYIVT  270 (438)
T ss_pred             ------------------------------ccccc-------------CCHHHHHHHchHHHHHHHHHHHHHHHHHHHHH
Confidence                                          00000             001122345555554443 3444556677778


Q ss_pred             HHhhHHHHHhhCCccchh-HHHhhhhHHHHHHhhhhhHHHhhhccccchhhHHHHHHHHHHHHHHHHHHh---h-hhhHH
Q 014628          225 YWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFC---L-SSLYG  299 (421)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~  299 (421)
                      .|.|.|.++..+.+.... ....+..+..+++.++.|+++||++||     +.+....++..+.......   . ++.+.
T Consensus       271 ~~~~~y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~grr-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  345 (438)
T PRK09952        271 AFALNYSTQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADRFGRR-----RVYITGALIGTLSAFPFFMALEAQSIFWI  345 (438)
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCch-----HHHHHHHHHHHHHHHHHHHHHHcCChHHH
Confidence            899999988777775432 223445566778888999999999998     5554444333332221111   1 12233


Q ss_pred             HHHHHHHHHHHHHhccCchhhhhhcccCCchhhHHHHHHHHHHHhhcccCcchhHHHhhhcc-ccchhhhHHHHHHHHHH
Q 014628          300 FLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHV-NNWRKTTLALTSIFFLA  378 (421)
Q Consensus       300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~-g~~~~~~~~~~~~~~~~  378 (421)
                      .....++.+++.+...+..+.+..|.+|++.|+++.++.+...+.+++.++|.+.+++.|.. ++|...+.+...+.+++
T Consensus       346 ~~~~~~l~~~~~~~~~~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~  425 (438)
T PRK09952        346 VFFSIMLANIAHDMVVCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLIS  425 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHH
Confidence            33334444556566666778888999999999999999766656558888999999998865 34666666666555555


Q ss_pred             HHHHH
Q 014628          379 AGIWF  383 (421)
Q Consensus       379 ~~~~~  383 (421)
                      .+..+
T Consensus       426 ~v~~~  430 (438)
T PRK09952        426 AMTAL  430 (438)
T ss_pred             HHHHH
Confidence            44443

>TIGR00893 2A0114 d-galactonate transporter

Probab=100.00  E-value=8.1e-34  Score=259.56  Aligned_cols=352  Identities=17%  Similarity=0.190  Sum_probs=251.8

Q ss_pred             ccccchhhHHHHhhhhcCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhhhhhhhccchhhhhhccCCCCCchhH
Q 014628            2 VGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAW   81 (421)
Q Consensus         2 lg~~i~~~~~g~l~Dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~   81 (421)
                      ++..+++++.|+++||+|||+++..+.++..++.++++++++++.+++.|++.|++.+...+....++.|++|+++|+++
T Consensus        40 ~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~  119 (399)
T TIGR00893        40 WGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFAGAYVSLYILRVLLGAAEAPFFPGIILIVASWFPASERATA  119 (399)
T ss_pred             HHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHH
Confidence            45678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhhHHHhHHhhhhcchhHHHHHHHHHHHHHHHHHHHhcccccccccCCccccchhhhhhcccccccccC
Q 014628           82 LSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNL  161 (421)
Q Consensus        82 ~~~~~~~~~~G~~~g~~~~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (421)
                      +++.+...++|.++++.+++.+.+..+||+.|++.+++.++..+..++..||.+++.+..   ++.....   ..+. . 
T Consensus       120 ~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~---~~~~-~-  191 (399)
T TIGR00893       120 VSIFNSAQGLGGIIGGPLVGWILIHFSWQWAFIIEGVLGIIWGVLWLKFIPDPPQKAKWL---TEEEKYI---VVGG-L-  191 (399)
T ss_pred             HHHHHHhchHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhheecCCCCccccC---CHHHHhh---cchh-h-
Confidence            999999999999999999999999999999999999888777776666666543221100   0000000   0000 0 


Q ss_pred             CcccccccchhhhhhhccccchhhhhhhhhhhhhhhHHhhcchhHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhCCccch
Q 014628          162 NDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNAD  241 (421)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (421)
                          .+   +. +.+ +++          +......++.+++|.++...+..++.......+..+.|.|+++..+.++..
T Consensus       192 ----~~---~~-~~~-~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (399)
T TIGR00893       192 ----LA---EQ-QGK-GPS----------TPKKYQIKELLKDRRVWGLALGQFLVNIGLGFFLTWFPTYLVQERGLSILE  252 (399)
T ss_pred             ----cc---cc-ccc-ccc----------CCCccchHHHhcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcccHHH
Confidence                00   00 000 000          001123556778898988888888888888889999999999888877544


Q ss_pred             h-HHHhhhhHHHHHHhhhhhHHHhhhccccchhhHHHHHHHHHHHHHHHHHHh---hhhhHHHHHHHHHHHHHHHhccCc
Q 014628          242 M-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFC---LSSLYGFLALFTVGELLVFATQAP  317 (421)
Q Consensus       242 ~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~  317 (421)
                      . .......++.+++.++.+++.||+++|+..................+....   .++.+.......+..++. ...+.
T Consensus       253 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  331 (399)
T TIGR00893       253 AGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARKTAIIAGLVLSLLMFATNYVNIPYAALALVALGFFGL-GAGAI  331 (399)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHhch-hhhhH
Confidence            4 444666788899999999999999988421100101111111111111111   123333333333333333 35677


Q ss_pred             hhhhhhcccCCchhhHHHHHHHHHHHhhcccCcchhHHHhhhccccchhhhHHHHHHHHHHHHHH
Q 014628          318 VNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFFLAAGIW  382 (421)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~  382 (421)
                      ...+..+..|+++|+++.|+.+...+. |..++|.+.|.+.|..|++...+.+.+.+.+++.+..
T Consensus       332 ~~~~~~~~~~~~~~g~~~~~~~~~~~~-g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~  395 (399)
T TIGR00893       332 GWALISDNAPGNIAGLTGGLINSLGNL-GGIVGPIVIGAIAATTGSFAGALMVVAALALIGALSY  395 (399)
T ss_pred             HHHHHHhhcChhHHHHHHHHHHHHHHH-hhhhhhHHhhhhccCCCchhHHHHHHHHHHHHHHHHH
Confidence            888999999999999999999776665 9999999999999987767777777766655554443

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=100.00  E-value=1.4e-33  Score=258.20  Aligned_cols=328  Identities=17%  Similarity=0.174  Sum_probs=236.2

Q ss_pred             ccccchhhHHHHhhhhcCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhhhhhhhccchhhhhhccCCCCCchhH
Q 014628            2 VGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAW   81 (421)
Q Consensus         2 lg~~i~~~~~g~l~Dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~   81 (421)
                      ++..+++++.|+++||+|||+++..+.++..++.++++++++++.+++.|+++|++.+...+...+++.|++|+++|+++
T Consensus        61 ~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~  140 (406)
T PRK11551         61 LGLLPGALLGGRLADRIGRKRILIVSVALFGLFSLATAQAWDFPSLLVARLLTGVGLGGALPNLIALTSEAVGPRLRGTA  140 (406)
T ss_pred             HHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHHHHHH
Confidence            46778999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhhHHHhHHhhhhcchhHHHHHHHHHHHHHHHHHHHhcccccccccCCccccchhhhhhcccccccccC
Q 014628           82 LSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNL  161 (421)
Q Consensus        82 ~~~~~~~~~~G~~~g~~~~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (421)
                      +++.+.+..+|..+++.+++.+.+..+||+.|++.+++.++..++.....||++++.+++++.+..              
T Consensus       141 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~--------------  206 (406)
T PRK11551        141 VSLMYCGVPFGGALASVIGVLAAGDAAWRHIFYVGGVGPLLLVPLLMRWLPESRAFAQAAGAGKQR--------------  206 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHHHHHHHHHHHHHHHhCCCChhHHhccCcchhh--------------
Confidence            999999999999999999998888889999999988776666665555556643221100000000              


Q ss_pred             CcccccccchhhhhhhccccchhhhhhhhhhhhhhhHHhhcchhHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhCCccch
Q 014628          162 NDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNAD  241 (421)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (421)
                                        +       ..    .+......+.+..+...+..++.....+....|.|.++++ .+.++..
T Consensus       207 ------------------~-------~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~g~s~~~  256 (406)
T PRK11551        207 ------------------A-------PV----LRALFGEGRATATLLLWISYFFTLIVLYFLLNWLPSLLVG-QGLSRSQ  256 (406)
T ss_pred             ------------------h-------hh----HHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCChhh
Confidence                              0       00    0000000011222233333344445566677789999887 4555433


Q ss_pred             h-HHHhhhhHHHHHHhhhhhHHHhhhccccchhhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhccCchhh
Q 014628          242 M-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNY  320 (421)
Q Consensus       242 ~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (421)
                      . .......++.+++.++.|++.||++++     +.+..........++.....++.+...+..++.+++.....+....
T Consensus       257 ~~~~~~~~~~~~~~~~~~~g~l~dr~g~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  331 (406)
T PRK11551        257 AGLVQIAFNIGGALGSLLIGALMDRLRPR-----RVVLLIYAGILASLAALAAAPSFAGMLLAGFAAGLFVVGGQSVLYA  331 (406)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhHH-----HHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhHHHHHHH
Confidence            3 444666788899999999999999987     5555444444444333333444444445555566666666677788


Q ss_pred             hhhcccCCchhhHHHHHHHHHHHhhcccCcchhHHHhhhccccchhhhHHHHHHHHHHH
Q 014628          321 VCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFFLAA  379 (421)
Q Consensus       321 ~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~  379 (421)
                      +..+.+|+++|+++.|+.+...+. |..++|.+.|.+.+..+++...+.....+.+.+.
T Consensus       332 ~~~~~~p~~~~g~~~g~~~~~~~~-g~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~  389 (406)
T PRK11551        332 LAPLFYPTQVRGTGVGAAVAVGRL-GSMAGPLLAGQLLALGRSTVGVIGASIPVILVAA  389 (406)
T ss_pred             HHHHHcchhhhhhhhhHHHHhhhH-HHHHHhhhHhhhhccCCchHHHHHHHHHHHHHHH
Confidence            889999999999999999766665 8899999999999986666555554444433333

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=100.00  E-value=9.5e-34  Score=265.20  Aligned_cols=369  Identities=16%  Similarity=0.129  Sum_probs=228.2

Q ss_pred             ccccchhhHHHHhhhhcCCchHHHHHHHHHHHHHhhhhhhhh------HHHHHHHHHHhhhhhhhhccchhhhhhccCCC
Q 014628            2 VGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFD------FWSIAICRMLVGVGEASFISLAAPFIDDNAPV   75 (421)
Q Consensus         2 lg~~i~~~~~g~l~Dr~Grr~~~~~~~~~~~~~~~~~~~~~~------~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~   75 (421)
                      +|++++++++|+++||+|||+++.++.++..+++++++++++      ++.++++|+++|++.|...+....++.|++|+
T Consensus        67 ig~~ig~~~~g~l~d~~Grr~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~  146 (502)
T TIGR00887        67 IGTLAGQLFFGWLADKLGRKRVYGMELIIMIIATVASGLSPGSSPKSVMATLCFWRFWLGVGIGGDYPLSAIITSEFATK  146 (502)
T ss_pred             HHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHccCcccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcCh
Confidence            578899999999999999999999999999999999988876      78999999999999999999999999999999


Q ss_pred             CCchhHHHHHHHHHHHHhhhHHHhHHhhhh-----------------------cchhHHHHHHHHHHHHHHHHHHHhccc
Q 014628           76 PQKTAWLSMFYMCIPTGVALGYVYGGVVGS-----------------------HLNWRYAFWGEAILMLPFAVLAFVIKP  132 (421)
Q Consensus        76 ~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~-----------------------~~~wr~~f~~~~~~~~~~~~~~~~~~p  132 (421)
                      ++|++++++.+....+|..+++.++..+..                       .++||++|.+.++++++..+. .++.|
T Consensus       147 ~~Rg~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip~~i~~~~-~~~lp  225 (502)
T TIGR00887       147 KWRGAMMAAVFAMQGFGILAGAIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPALLALYF-RLTIP  225 (502)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccchhcccHHHHHHHHHHHHHHHHHH-HHhCC
Confidence            999999999999999999999988876532                       237999998888776654444 45569


Q ss_pred             ccccccCCccccchhhhhhcccccccccCCcccccccchhhhhhhccccchhhhhhhhhhhhhhhHHhhc----chh---
Q 014628          133 LQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQ----EKV---  205 (421)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~---  205 (421)
                      |++++...+++.++.. .+...+.+..+.+++ .++.++.++   +++..    ..       +++++++    ++.   
T Consensus       226 ESpr~l~~~~~~~~~a-~~~~~~~~~~~~~~~-~~~~~~~~~---~~~~~----~~-------~~~~l~~~~~~~~~~~~  289 (502)
T TIGR00887       226 ETPRYTADVAKDVEQA-ASDMSAVLQVKIEAE-PDEVEKAST---AVEVP----KA-------SWSDFFTHFFKWRHGKH  289 (502)
T ss_pred             CCHHHHHHhCcchHHH-HHHHHHHhccccccC-cccccchhc---cccch----hh-------hHHHHHHHHhhhHHHHH
Confidence            9988643222211110 000111111000000 000000000   00000    01       1222222    111   


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhHHHHHhhCCccch-------------hHHHhhhhHHHHHHhhhhhHHHhhhccccch
Q 014628          206 YVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNAD-------------MMFGGVTIVCGIVGTISGGFILDQMGATISN  272 (421)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~  272 (421)
                      .......++.....+++...|.|.++++. +.+...             .....+..++.+++.+++++++||+|||   
T Consensus       290 ~~~~~~~~~~~~~~~y~~~~~~p~i~~~~-G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~gRR---  365 (502)
T TIGR00887       290 LLGTAGSWFLLDIAFYGVNLNQKVILSAI-GYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDIIGRK---  365 (502)
T ss_pred             HHHHHHHHHHHHHHHHccccccHHHHHHH-cCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcch---
Confidence            12222233344455667777888888764 443211             0112333456677888999999999998   


Q ss_pred             hhHHHHHHHHHHHHHHHHHHhhh---hhHHHHHHHHHHHHH-HHhccCchhhhhhcccCCchhhHHHHHHHHHHHhhccc
Q 014628          273 AFKLLSAATFLGAISCLTAFCLS---SLYGFLALFTVGELL-VFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDV  348 (421)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~  348 (421)
                        +.+..+..+..+.+.......   +........++..++ .....+..+.+..|.+|++.|+++.|+.+...+. +++
T Consensus       366 --~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~~~R~~~~g~~~~~~~~-~~~  442 (502)
T TIGR00887       366 --PIQLMGFFILTVLFFVLGFAYNHLSTHGFLAIYVLAQFFANFGPNATTFIVPGEVFPTRYRSTAHGISAASGKA-GAI  442 (502)
T ss_pred             --hHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCCchhhhhhhccCchhHHHHHHHHHHHHhhh-HHH
Confidence              655554444443332222111   111111222222222 2233445566778999999999999999766666 889


Q ss_pred             CcchhHHHhhhccc---------cchhhhHHHHHHHHHHHHHHHHhhhhcc-ccccccc
Q 014628          349 PSSPLVGVLQDHVN---------NWRKTTLALTSIFFLAAGIWFVGIFLKS-IDKFNED  397 (421)
Q Consensus       349 ~~~~~~g~l~~~~g---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  397 (421)
                      ++|.+.+.+.+..+         ++...+.+++++.+++.+..+   ++|| ++++.||
T Consensus       443 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~---~lpEt~~~~lee  498 (502)
T TIGR00887       443 IGQFGFLYLAQHGDPTKGYPTGIWMGHVLEIFALFMFLGILFTL---LIPETKGKSLEE  498 (502)
T ss_pred             HHHHHhhhhhccccccccccccccchHHHHHHHHHHHHHHHHhe---EeccCCCCCHHh
Confidence            99999999988431         123455555555544433322   3454 4444443

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=100.00  E-value=2.2e-33  Score=259.38  Aligned_cols=353  Identities=13%  Similarity=0.077  Sum_probs=233.9

Q ss_pred             ccccchhhHHHHhhhhcCCchHHHHHHHHHHHHHhhhhhhh----hHHHHHHHHHHhhhhhhhhccchhhhhhccCCCCC
Q 014628            2 VGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSF----DFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQ   77 (421)
Q Consensus         2 lg~~i~~~~~g~l~Dr~Grr~~~~~~~~~~~~~~~~~~~~~----~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~   77 (421)
                      +++++++++.|+++||+|||++++.+.++.+++.+++++++    +++.+++.|++.|++.+...+.....+.|++|+++
T Consensus        74 i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~  153 (452)
T PRK11273         74 IAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKE  153 (452)
T ss_pred             HHHHHHHhhhhhhhhccCCchhHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHHhccchHHHHHHHHhCChHH
Confidence            56788999999999999999999999999999999888763    78888999999999999888888888999999999


Q ss_pred             chhHHHHHHHHHHHHhh-hHHHhHHhhhhcchhHHHHHHHHHHHHHHHHHHHhcccccccccCCccccchhhhhhccccc
Q 014628           78 KTAWLSMFYMCIPTGVA-LGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGS  156 (421)
Q Consensus        78 r~~~~~~~~~~~~~G~~-~g~~~~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~  156 (421)
                      |++++++++.+.++|.. .+|+++..+....+||+.|++.+++.++..++.+++.||++++...+++++..         
T Consensus       154 r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~gw~~~f~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~---------  224 (452)
T PRK11273        154 RGGIVSVWNCAHNVGGGLPPLLFLLGMAWFNDWHAALYMPAFAAILVALFAFAMMRDTPQSCGLPPIEEYK---------  224 (452)
T ss_pred             HHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCHhhcCCCChhhhh---------
Confidence            99999999999999874 45655444444458999999998887777776666666654321111100000         


Q ss_pred             ccccCCcccccccchhhhhhhccccchhhhhhhhhhhhhhhHHhhcchhHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhC
Q 014628          157 EASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYH  236 (421)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (421)
                       ++..         ++.++++.++       .+.++.  -.+.+++++.+|...+..++.....++...|+|.|+++..+
T Consensus       225 -~~~~---------~~~~~~~~~~-------~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g  285 (452)
T PRK11273        225 -NDYP---------DDYNEKHEQE-------LTAKQI--FMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKH  285 (452)
T ss_pred             -hccc---------cccccccCCC-------ccHHHH--HHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence             0000         0000000000       000010  02346788999988888878777778888999999998877


Q ss_pred             Cccchh-HHHhhhhHHHHHHhhhhhHHHhhhccccchhhHHHHHHHHHHHHHHHHHHh--hhhhHHHHHHHHHHHHHHHh
Q 014628          237 MSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFC--LSSLYGFLALFTVGELLVFA  313 (421)
Q Consensus       237 ~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~  313 (421)
                      .+.... ....+..++.+++.++.|+++||++++++.  ........+..........  ..+.+...+.....+.....
T Consensus       286 ~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~--~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  363 (452)
T PRK11273        286 FALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRG--ATGVFFMTLVTIATIVYWLNPAGNPTVDMACMIVIGFLIYG  363 (452)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcc--hHHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHh
Confidence            775444 334556678888999999999999543211  1111111111111111111  12222222223333332222


Q ss_pred             ccCchhhhhhcccCCchhhHHHHHHHHHHHhhcccCcchhHHHhhhccccchhhhHHHHHHHHHHHHHHHHh
Q 014628          314 TQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFFLAAGIWFVG  385 (421)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~  385 (421)
                      ..........+.+|++.|++++|+.+...+..+...+|.+.|.+.|..| |...|..++.+.+++++....+
T Consensus       364 ~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~g~l~~~~g-~~~~f~~~~~~~~~~~~~~~~~  434 (452)
T PRK11273        364 PVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFG-WDGGFMVMIGGSILAVILLIVV  434 (452)
T ss_pred             HHHHHHHHHHHHcChhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhc-chHHHHHHHHHHHHHHHHHHHH
Confidence            2222344567889999999999999766666334557999999999987 7788877777666665555433

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=100.00  E-value=8e-34  Score=261.78  Aligned_cols=353  Identities=14%  Similarity=0.090  Sum_probs=244.6

Q ss_pred             cccchhhHHHHhhhhcCCchHHHHHHHHHHHHHhhhhhhhhHHHHHH-HHHHhhhhhhhhccchhhhhhccCCCCCchhH
Q 014628            3 GLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAI-CRMLVGVGEASFISLAAPFIDDNAPVPQKTAW   81 (421)
Q Consensus         3 g~~i~~~~~g~l~Dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~   81 (421)
                      +..++.++.|+++||+|||++++.+.++..++.++++++++++.+++ .|+++|++.+...+....++.++++ ++|+++
T Consensus        66 ~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~r~~a  144 (455)
T TIGR00892        66 VLYAGGPISSILVNRFGCRPVVIAGGLLASLGMILASFSSNVIELYLTAGFITGLGLAFNFQPSLTMLGKYFY-RRRPLA  144 (455)
T ss_pred             HHHHhhHHHHHHHHHcCchHHHHhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHH-hhHHHH
Confidence            45677899999999999999999999999999999999999998875 5799999999777777888899996 679999


Q ss_pred             HHHHHHHHHHHhhhHHHhHHhhhhcchhHHHHHHHHHHHHHHHHHHHhcccccccccCCccccchhhhhhcccccccccC
Q 014628           82 LSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNL  161 (421)
Q Consensus        82 ~~~~~~~~~~G~~~g~~~~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (421)
                      +++.+.+..+|..++|.+++.+.+.+|||+.|++.+++.++..+..++..|+.......+++.+     +   ..+....
T Consensus       145 ~g~~~~~~~~g~~~~~~l~~~l~~~~gwr~~f~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~-----~---~~~~~~~  216 (455)
T TIGR00892       145 NGLAMAGSPVFLSTLAPLNQYLFESFGWRGSFLILGGLLLHCCVCGALMRPVGPSQRVSKSKSK-----E---GLPPDGS  216 (455)
T ss_pred             HHHHHhcccHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhCCCCccccccccccc-----c---cCCCCCc
Confidence            9999999999999999999999999999999999998877666555554433111000000000     0   0000000


Q ss_pred             CcccccccchhhhhhhccccchhhhhhhhhhhhhhhHHhhcchhHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhCCccch
Q 014628          162 NDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNAD  241 (421)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (421)
                          .+   +.   +. ...     .+..++ ..++ +++++|.++......++..........++|.|.++ .+.+...
T Consensus       217 ----~~---~~---~~-~~~-----~~~~~~-~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~-~g~s~~~  277 (455)
T TIGR00892       217 ----TK---KL---SK-KST-----AEKINR-FLDF-SLFTHRGFLVYLSGNVIMFLGFFAPIIFLVPYAKD-KGVDEYE  277 (455)
T ss_pred             ----cc---cc---cc-cch-----hhhhhh-hcch-HHhcCchHHHHHHHHHHHHHHccchHHHHHHHHHH-cCCCHHH
Confidence                00   00   00 000     000000 0112 46688888888877777777777778889999876 4666544


Q ss_pred             h-HHHhhhhHHHHHHhhhhhHHHhhhccccchhhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhccCchhh
Q 014628          242 M-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNY  320 (421)
Q Consensus       242 ~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (421)
                      . ...++..++.+++.++.+++.||...+.++ ...+..+.+......++....++.+.+.+..++.+++.+...+....
T Consensus       278 ~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~-~~~~~~~~~~~~l~~ll~~~~~~~~~~~i~~~~~G~~~g~~~~~~~~  356 (455)
T TIGR00892       278 AAFLLSIIGFVDIFARPSCGLIAGLKWIRPHV-QYLFSFALLFNGLTHLLCALAGDYTGLVIYCIFFGLSFGSVGALLFE  356 (455)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcccccCHHH-HHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhchHHHHHHH
Confidence            4 444667788888899999999974322111 12222222222232333333445555566666677777777777788


Q ss_pred             hhhcccCCchhhHHHHHHHHHHHhhcccCcchhHHHhhhccccchhhhHHHHHHHHHHHHHHHHh
Q 014628          321 VCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFFLAAGIWFVG  385 (421)
Q Consensus       321 ~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~  385 (421)
                      .+.+.+|+++++++.|+++...+. |.+++|.+.|.+.|..++|...+...+++.+++.+.....
T Consensus       357 ~~~~~~~~~~~g~~~g~~~~~~~l-g~~igp~i~G~l~~~~g~~~~~f~~~~~~~li~~~~~~~~  420 (455)
T TIGR00892       357 VLMDLVGAQRFSSAVGLVTIVECC-AVLIGPPLAGRLVDATKNYKYIFYASGSIVVSAGLFLAIG  420 (455)
T ss_pred             HHHHHhhHHHHhhHHhHHHHHHHH-HHHccccceeeeehhcCCcchHHHHhhHHHHHHHHHHHHH
Confidence            889999999999999999766666 9999999999999988778888888777666655544433

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=100.00  E-value=5.8e-33  Score=251.86  Aligned_cols=319  Identities=12%  Similarity=-0.034  Sum_probs=232.5

Q ss_pred             ccccchhhHHHHhhhhcCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhhhhhhhccchhhhhhccCCCCCchhH
Q 014628            2 VGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAW   81 (421)
Q Consensus         2 lg~~i~~~~~g~l~Dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~   81 (421)
                      +++.+++++.|+++||+|||+++..+..+++++.+++++++|++.+++.|+++|++.+...+....++.|++| ++|+++
T Consensus        55 ~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~~~~~~~~~~a~~~~~ll~~r~l~Gig~~~~~~~~~~~~~~~~~-~~~~~~  133 (393)
T PRK09705         55 VTMGGLALAGSWLHQHVSERRSVAISLLLIAVGALMRELYPQSALLLSSALLGGVGIGIIQAVMPSVIKRRFQ-QRTPLV  133 (393)
T ss_pred             HHHHHHhhhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHCcchHHHHHHHHHHHhHHHHHhhhhhHHHHHHcc-ccchhH
Confidence            5678899999999999999999999999999999999999999999999999999999999999999999997 779999


Q ss_pred             HHHHHHHHHHHhhhHHHhHHhhhhcc-hhHHHHHHHHHHHHHHHHHHHhcccccccccCCccccchhhhhhccccccccc
Q 014628           82 LSMFYMCIPTGVALGYVYGGVVGSHL-NWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASN  160 (421)
Q Consensus        82 ~~~~~~~~~~G~~~g~~~~~~l~~~~-~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (421)
                      ++.+..+...|..+++.+++++.++. +||+.+.+.++..++..+..+...++.      +++++..             
T Consensus       134 ~g~~~~~~~~g~~~g~~~~~~l~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~-------------  194 (393)
T PRK09705        134 MGLWSAALMGGGGLGAAITPWLVQHSETWYQTLAWWALPAVVALFAWWWQSARE------VASSHKT-------------  194 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhcCC------CccccCC-------------
Confidence            99999999999999999999988875 899998877665443332222111110      0000000             


Q ss_pred             CCcccccccchhhhhhhccccchhhhhhhhhhhhhhhHHhhcchhHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhCCccc
Q 014628          161 LNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNA  240 (421)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (421)
                                        +               ...++.++++..+...+..++....+.....|.|.++++ .+.+..
T Consensus       195 ------------------~---------------~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~lp~~l~~-~g~s~~  240 (393)
T PRK09705        195 ------------------T---------------TTPVRVVFTPRAWTLGVYFGLINGGYASLIAWLPAFYIE-IGASAQ  240 (393)
T ss_pred             ------------------C---------------cCCcccccCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCChh
Confidence                              0               001123355666666666666677788888999999987 576654


Q ss_pred             hh-HHHhhhhHHHHHHhhhhhHHHhhhccccchhhHHHHHHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHHHHhccCch
Q 014628          241 DM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFC-LSSLYGFLALFTVGELLVFATQAPV  318 (421)
Q Consensus       241 ~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  318 (421)
                      .. ....+..++.+++.++.+++.||.++|     +....+..+.......... ..+....  ...+.+++.+...+..
T Consensus       241 ~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~-----~~~~~~~~l~~~~~~~~~~~~~~~~~~--~~~l~g~g~g~~~~~~  313 (393)
T PRK09705        241 YSGSLLALMTLGQAAGALLMPAMARHQDRR-----KLLMLALVLQLVGFCGFIWLPLQLPVL--WAMVCGLGLGGAFPLC  313 (393)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHhhccch-----HHHHHHHHHHHHHHHHHHHccchHHHH--HHHHHHHhccchHHHH
Confidence            44 445677788999999999999999987     5555554444443333222 2222211  2233455555555555


Q ss_pred             hhhhhcccC-CchhhHHHHHHHHHHHhhcccCcchhHHHhhhccccchhhhHHHHHHHHHHHHHH
Q 014628          319 NYVCLHSVK-PSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFFLAAGIW  382 (421)
Q Consensus       319 ~~~~~~~~~-~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~  382 (421)
                      .....+..+ ++++++..|+.+...+. +..++|.+.|++.|..|++...+.+...+.+...+..
T Consensus       314 ~~~~~~~~~~~~~~g~~~g~~~~~~~~-~~~~gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~  377 (393)
T PRK09705        314 LLLALDHSVQPAIAGKLVAFMQGIGFI-IAGLAPWFSGVLRSISGNYLMDWAFHALCVVGLMIIT  377 (393)
T ss_pred             HHHHHhhcCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHH
Confidence            555566665 47899999999766666 7788999999999999888777777776655544433

>TIGR00900 2A0121 H+ Antiporter protein

Probab=100.00  E-value=8.3e-33  Score=249.91  Aligned_cols=313  Identities=17%  Similarity=0.143  Sum_probs=240.5

Q ss_pred             ccccchhhHHHHhhhhcCCchHHHHHHHHHHHHHhhhhhhh-----hHHHHHHHHHHhhhhhhhhccchhhhhhccCCCC
Q 014628            2 VGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSF-----DFWSIAICRMLVGVGEASFISLAAPFIDDNAPVP   76 (421)
Q Consensus         2 lg~~i~~~~~g~l~Dr~Grr~~~~~~~~~~~~~~~~~~~~~-----~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~   76 (421)
                      ++.+++++++|+++||+|||+++..+.++..++.++..+++     +++.+++.|+++|++.+...+...+++.|++|++
T Consensus        45 ~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~  124 (365)
T TIGR00900        45 LPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLPFVALLGGLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEE  124 (365)
T ss_pred             HHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHH
Confidence            45678899999999999999999999999999999888888     9999999999999999999999999999999999


Q ss_pred             CchhHHHHHHHHHHHHhhhHHHhHHhhhhcchhHHHHHHHHHHHHHHHHHHHhcccccccccCCccccchhhhhhccccc
Q 014628           77 QKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGS  156 (421)
Q Consensus        77 ~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~  156 (421)
                      +|++++++.+.+..+|.+++|.+++.+.+..|||+.|++.++..++..+..+...++..+.   +++++ .         
T Consensus       125 ~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~-~---------  191 (365)
T TIGR00900       125 QLTQANSLSQAVRSLFYIVGPGIGGLMYATLGIKWAIWVDAVGFAISALLIVSVRIPELAA---SEIQA-L---------  191 (365)
T ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhcccccCCC---ccccc-c---------
Confidence            9999999999999999999999999999999999999998876665554444332211100   00000 0         


Q ss_pred             ccccCCcccccccchhhhhhhccccchhhhhhhhhhhhhhhHHhhcchhHHHHHHHHHHHHHHHHHHH-HHhhHHHHHhh
Q 014628          157 EASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYS-YWGPKAGYNIY  235 (421)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  235 (421)
                                   ++                +..++..+.++.++++|.++...+..+.......... .+.|.+.++..
T Consensus       192 -------------~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (365)
T TIGR00900       192 -------------SN----------------AVLRDTREGIKFVLKNPLLRTLLLLALLFNLVFAPAIVALFPYVQSKYL  242 (365)
T ss_pred             -------------ch----------------hHHHHHHhHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHh
Confidence                         00                0001112345667788888887777666666666665 78899888877


Q ss_pred             CCccchh-HHHhhhhHHHHHHhhhhhHHHhhhccccchhhHHHHHHHHHHHHHHHHHHhhhh-hHHHHHHHHHHHHHHHh
Q 014628          236 HMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSS-LYGFLALFTVGELLVFA  313 (421)
Q Consensus       236 ~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  313 (421)
                      +.++... .......++.+++.++.+++.||.+++     +.+..+..............++ .+...+..++.+++.+.
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  317 (365)
T TIGR00900       243 GRGSTHYGWVLAAFGLGALLGALLLGLLGRYFKRM-----ALMTGAIFVIGLAILVVGLTPPNFPLFLVLWFAIGVGYGP  317 (365)
T ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhchh-----HHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHH
Confidence            7775444 344566788889999999999999887     5555544444444444443342 55556667777787777


Q ss_pred             ccCchhhhhhcccCCchhhHHHHHHHHHHHhhcccCcchhHHHhhhccc
Q 014628          314 TQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVN  362 (421)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~g  362 (421)
                      ..+....+..+.+|+++|+++.|+.+...+. +..++|.+.|.+.|..|
T Consensus       318 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~g~~~~g~l~~~~g  365 (365)
T TIGR00900       318 INVPQGTLLQRRVPAELLGRVFGAQFSLSHA-AWPLGLILAGPLADHLG  365 (365)
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHcC
Confidence            7888888999999999999999999777666 88899999999998653

>TIGR00898 2A0119 cation transport protein

Probab=100.00  E-value=6.1e-33  Score=261.04  Aligned_cols=352  Identities=14%  Similarity=0.098  Sum_probs=234.4

Q ss_pred             ccccchhhHHHHhhhhcCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhhhhhhhccchhhhhhccCCCCCchhH
Q 014628            2 VGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAW   81 (421)
Q Consensus         2 lg~~i~~~~~g~l~Dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~   81 (421)
                      +|+++++++.|+++||+|||++++++.++.+++.+++++++|++.+++.|++.|++.+...+....++.|++|+++|+++
T Consensus       138 ~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~e~~~~~~r~~~  217 (505)
T TIGR00898       138 VGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVFLVFRLLVGMGIGGIWVQAVVLNTEFLPKKQRAIV  217 (505)
T ss_pred             HHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhhccchHHHHHHHhheecChhhhHHH
Confidence            57889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhhHHHhHHhhhhcchhHHHHHHHHHHHHHHHHHHHhcccccccccCCccccchhhhhhcccccccccC
Q 014628           82 LSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNL  161 (421)
Q Consensus        82 ~~~~~~~~~~G~~~g~~~~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (421)
                      .++...+..+|.++++.++..+.+   ||+.|++.+++.++..+.. ++.||++++...+++.++  ..+..++..+.+.
T Consensus       218 ~~~~~~~~~~g~~~~~~~~~~~~~---wr~~~~~~~i~~~~~~~~~-~~~~esp~~l~~~~~~~~--a~~~l~~~~~~~~  291 (505)
T TIGR00898       218 GTLIQVFFSLGLVLLPLVAYFIPD---WRWLQLAVSLPTFLFFLLS-WFVPESPRWLISQGRIEE--ALKILQRIAKING  291 (505)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhH---HHHHHHHHHHHHHHHHHHH-HhcCCChHHHHHCCCHHH--HHHHHHHHHHHcC
Confidence            999999999999999999877654   9999999998877766655 556887765322222111  1111111111111


Q ss_pred             CcccccccchhhhhhhccccchhhhhhhhhhhhhhhHHhhcchhHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhCCccch
Q 014628          162 NDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNAD  241 (421)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (421)
                      .....+......+++..+++           ...+.++++++|.++...+......+......+..+.+..+ .+.+  .
T Consensus       292 ~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~  357 (505)
T TIGR00898       292 KKLPAEVLSLSLEKDLSSSK-----------KQYSFLDLFRTPNLRKTTLCLMMLWFTTAFSYYGLVLDLGN-LGGN--I  357 (505)
T ss_pred             CCCCHHHHhhhhhhhhhhcc-----------CCCcHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHhccccc-cCCC--h
Confidence            00000000000000000000           01245677788887766655443333322222222222222 2222  1


Q ss_pred             hHHHhhhhHHHHHHhhhhhHHHhhhccccchhhHHHHHHHHHHHHHHHHHHhhhhh--HHHHHHHHHHHHHHHhccCchh
Q 014628          242 MMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSL--YGFLALFTVGELLVFATQAPVN  319 (421)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~  319 (421)
                      .....+..+..+++.++.+++.||+|||     +.+....++.++.++.....++.  +......++.+++....++..+
T Consensus       358 ~~~~~~~~~~~i~~~~~~~~l~dr~grr-----~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  432 (505)
T TIGR00898       358 YLDLFISGLVELPAKLITLLLIDRLGRR-----YTMAASLLLAGVALLLLLFVPVDLYFLRTALAVLGKFGITSAFQMVY  432 (505)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCH-----HHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHH
Confidence            2223445677788999999999999998     66666666555555544443322  3344445555666666677778


Q ss_pred             hhhhcccCCchhhHHHHHHHHHHHhhcccCcchhHHHhhhccccchhhhHHHHHHHHHHHHHH
Q 014628          320 YVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFFLAAGIW  382 (421)
Q Consensus       320 ~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~  382 (421)
                      .+..|.+|++.|+++.|+.+...+. |++++|.+.+ +.+ .+ +..++.+.+.+.+++.++.
T Consensus       433 ~~~~e~~p~~~r~~~~g~~~~~~~i-g~~i~p~i~~-~~~-~~-~~~~~~~~~~~~~~~~~~~  491 (505)
T TIGR00898       433 LYTAELYPTVVRNLGVGVCSTMARV-GSIISPFLVY-LGE-KW-LFLPLVLFGGLALLAGILT  491 (505)
T ss_pred             HHhcccccHHHHhhhHhHHHHHHHH-HHHHHhHHHH-HHH-HH-HhhHHHHHHHHHHHHHHHH
Confidence            8899999999999999999766665 9999998888 443 23 3355555555554444443

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=100.00  E-value=7.1e-33  Score=257.61  Aligned_cols=347  Identities=14%  Similarity=0.140  Sum_probs=242.0

Q ss_pred             ccccchhhHHHHhhhhcCCchHHHHHHHHHHHHHhhhhhh--hhHHHHHHHHHHhhhhhhhhccchhhhhhccCCCCCch
Q 014628            2 VGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSS--FDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKT   79 (421)
Q Consensus         2 lg~~i~~~~~g~l~Dr~Grr~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~   79 (421)
                      +++.+++++.|+++||+|||+++..+.++++++.+++.++  .+++.+++.|+++|++.+...+....++.|++|+++|+
T Consensus        87 ~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~~~r~  166 (465)
T TIGR00894        87 YGQIIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGGGIALVVFCRVIQGLAQGSVSPATHKIIVKWAPPKERS  166 (465)
T ss_pred             HHHHHHHcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHhcccchhhHHHHHHhcCCHHHHH
Confidence            5788999999999999999999999999999998887554  56888999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHhhhHHHhHHhhhhcc-hhHHHHHHHHHHHHHHHHHHHhcccccccccCCccccchhhhhhccccccc
Q 014628           80 AWLSMFYMCIPTGVALGYVYGGVVGSHL-NWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEA  158 (421)
Q Consensus        80 ~~~~~~~~~~~~G~~~g~~~~~~l~~~~-~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (421)
                      +++++...+..+|.++++++++.+.+.. +||+.|++.++++++..++.+.+.||+++..+.  ..+.. .+.    .  
T Consensus       167 ~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~p~~~~~--~~~~~-~~~----i--  237 (465)
T TIGR00894       167 RLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMIFYVFGIVGCAWSLLWFVFPADDPSIHPC--ISKFE-KKY----I--  237 (465)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeehhhhhHHHHHHHHHHHHHhcCCcccCCC--CCHHH-HHH----H--
Confidence            9999999999999999999999999884 999999999998887777776665554322110  00000 000    0  


Q ss_pred             ccCCcccccccchhhhhhhccccchhhhhhhhhhhhhhhHHhhcchhHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhCCc
Q 014628          159 SNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMS  238 (421)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (421)
                                 ++..+++.++.+           ...+++++++++.++...+..++.....+.+.+|+|.|+++..+.+
T Consensus       238 -----------~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s  295 (465)
T TIGR00894       238 -----------NSSLQGQKGSTR-----------QSLPIKAIPKSLPVWAIWFAIFGHFWLYTILPTYLPTFISWVLRVS  295 (465)
T ss_pred             -----------HhhcccccCCCC-----------CCCCHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcC
Confidence                       000000000000           0124667889999999999888888889999999999999988888


Q ss_pred             cchh-HHHhhhhHHHHHHhhhhhHHHhhhccccchhhH----HHHHHHHHH-HHHHHHHHh-hhhhHHHHHHHHHHHHHH
Q 014628          239 NADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFK----LLSAATFLG-AISCLTAFC-LSSLYGFLALFTVGELLV  311 (421)
Q Consensus       239 ~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~----~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~  311 (421)
                      .... ....++.++.+++.++.|+++||+++|+...+.    ......... ....+.... ..+....++.+.+.+++.
T Consensus       296 ~~~~g~~~~~~~~~~~i~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  375 (465)
T TIGR00894       296 GKENGLLSSLPYLFAWLCSIFAGYLADFLKSSKTLSLTAARKIFNGIGGLGPGIFAYALPYLSAAFYLTIIILTLANAVS  375 (465)
T ss_pred             hHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHh
Confidence            6555 444677888999999999999998765322111    111111111 111111111 223333333444444444


Q ss_pred             HhccCchhhhhhcccCCchhhHHHHHHHHHHHhhcccCcchhHHHhhhcc--ccchhhhHHHHHHHHHHHHH
Q 014628          312 FATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHV--NNWRKTTLALTSIFFLAAGI  381 (421)
Q Consensus       312 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~--g~~~~~~~~~~~~~~~~~~~  381 (421)
                      +...+.......+.. ++.+|.+.|+.+..... +..++|.+.|.+.+..  +.|...+.+.++..+++.++
T Consensus       376 ~~~~~~~~~~~~~~~-~~~~g~~~g~~~~~~~l-~~~i~p~l~g~~~~~~~~~~~~~~f~~~~~~~~i~~i~  445 (465)
T TIGR00894       376 SGPLAGVLINSLDLA-PRFLGFIKGITGLPGFI-GGLIASTLAGNILSQDSKNVWLIVFLIMAFVNILCVIF  445 (465)
T ss_pred             hhhhhhhhhchhhcC-hhHHHHHHHHHHHHHHH-HHHHHHHhhheeeCCCCchHHHHHHHHHHHHHHHHHHH
Confidence            434343333444444 56899999999766665 8888999999888753  44666666666555555443

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=100.00  E-value=1.1e-32  Score=250.12  Aligned_cols=322  Identities=12%  Similarity=0.025  Sum_probs=236.5

Q ss_pred             ccccchhhHHHHhhhhcCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhhhhhhhccchhhhhhccCCCCCchhH
Q 014628            2 VGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAW   81 (421)
Q Consensus         2 lg~~i~~~~~g~l~Dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~   81 (421)
                      +++.+++++.|+++||+|||+++..+.++.+++.+++++++|++.++++|++.|++.+..++.....+.|++| ++|+++
T Consensus        49 ~~~~~~~~~~G~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~  127 (377)
T TIGR00890        49 IGLAMSMPVGGLLADKFGPRAVAMLGGILYGLGFTFYAIADSLAALYLTYGLASAGVGIAYGIALNTAVKWFP-DKRGLA  127 (377)
T ss_pred             HHHHHHhhhhHHHHHHcCccchhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHcC-cccHHH
Confidence            5678999999999999999999999999999999999999999999999999999999888888888999987 569999


Q ss_pred             HHHHHHHHHHHhhhHHHhHHhhhhcchhHHHHHHHHHHHHHHHHHHHhcccccccccCCccccchhhhhhcccccccccC
Q 014628           82 LSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNL  161 (421)
Q Consensus        82 ~~~~~~~~~~G~~~g~~~~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (421)
                      .++...+.++|..+++++.+.+.+..+||+.|++.+++.++..+..+++.|+.+++.    +++..              
T Consensus       128 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~--------------  189 (377)
T TIGR00890       128 SGIIIGGYGLGSFILSPLITSVINLEGVPAAFIYMGIIFLLVIVLGAFLIGYPPGQL----IKTNI--------------  189 (377)
T ss_pred             HHHHHHhcchhHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHheecCchhc----cccCc--------------
Confidence            999999999999887777777777789999999999888887777666654321110    00000              


Q ss_pred             CcccccccchhhhhhhccccchhhhhhhhhhhhhhhHHhhcchhHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhCCccch
Q 014628          162 NDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNAD  241 (421)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (421)
                            +.+        ++             ..+.++.++++.++...+..++..........+.+.+.++ .+.+...
T Consensus       190 ------~~~--------~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  241 (377)
T TIGR00890       190 ------EVS--------VK-------------DYTVWEMLRTPQFWVLYLSFFLNAVSGLLLIGLYKPYGQS-LGLSDGF  241 (377)
T ss_pred             ------ccc--------hh-------------hhhHHHHHcCccHHHHHHHHHHHhHHHHHHHHHHHHHHHH-cCCCHHH
Confidence                  000        00             0123455677777776666655555555555666666655 4555433


Q ss_pred             h-HHHhhhhHHHHHHhhhhhHHHhhhccccchhhHHHHHHHHHHHHHHHHHHhhhh--hHHHHHHHHHHHHHHHhccCch
Q 014628          242 M-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSS--LYGFLALFTVGELLVFATQAPV  318 (421)
Q Consensus       242 ~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~  318 (421)
                      . ....+..+..+++.++.+++.||++||     +.+..+........+.....++  .........+.+++.+...+..
T Consensus       242 ~~~~~~~~~~~~~~~~~~~g~l~dr~g~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~  316 (377)
T TIGR00890       242 LVLAVSISSIFNGGGRPFLGALSDKIGRQ-----KTMSIVFGISAVGMAAMLFIPMLNDVLFLATVALVFFTWGGTISLF  316 (377)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhh-----hhhhHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhccchhcc
Confidence            3 445667788899999999999999988     6665555555554444433332  2222233444555555556666


Q ss_pred             hhhhhcccCCchhhHHHHHHHHHHHhhcccCcchhHHHhhhccccchhhhHHHHHHHHH
Q 014628          319 NYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFFL  377 (421)
Q Consensus       319 ~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~  377 (421)
                      .....|.+|+++|+++.|+.+...+. |..++|.+.|.+.+..| |...+.+.+.+.++
T Consensus       317 ~~~~~~~~~~~~~~~~~g~~~~~~~~-g~~~~~~~~g~l~~~~g-~~~~f~~~~~~~~~  373 (377)
T TIGR00890       317 PSLVSDIFGPANSAANYGFLYTAKAV-AGIFGGLIASHALTEIG-FEYTFIVTGAFALT  373 (377)
T ss_pred             HHHHHHHhhhhhhhhHhHHHHHHHHH-HHHHHHHHHHHHHhhhc-hhhHHHHHHHHHHH
Confidence            77888999999999999999766665 88999999999999876 76777666655443

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=100.00  E-value=1.6e-32  Score=254.47  Aligned_cols=337  Identities=12%  Similarity=0.028  Sum_probs=224.3

Q ss_pred             ccccchhhHHHHhhhhcCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhhhhhhhccchhhhhhccCCCCCchhH
Q 014628            2 VGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAW   81 (421)
Q Consensus         2 lg~~i~~~~~g~l~Dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~   81 (421)
                      +++.+++++.|+++||+|||+++..+.++++++.++++++++++.++++|+++|++.+... ....+++|++|+++|+++
T Consensus        82 ~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~~~~~-~~~~~i~~~~~~~~rg~a  160 (476)
T PLN00028         82 SGSIFSRLAMGPVCDLYGPRYGSAFLLMLTAPAVFCMSLVSSATGFIAVRFFIGFSLATFV-SCQYWMSTMFNGKIVGTA  160 (476)
T ss_pred             HHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhhH-HHHHHHHHhcChhheeHH
Confidence            4677899999999999999999999999999999999999999999999999999988654 456788999999999999


Q ss_pred             HHHHHHHHHHHhhhHHHhHHhhh----h-----cchhHHHHHHHHHHHHHHHHHHHhcccccccccCCccccchhhhhhc
Q 014628           82 LSMFYMCIPTGVALGYVYGGVVG----S-----HLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASV  152 (421)
Q Consensus        82 ~~~~~~~~~~G~~~g~~~~~~l~----~-----~~~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~  152 (421)
                      +++.....++|..+++.+.+.+.    +     ..|||+.|++.+++.++..++.+++.++.++.     +.++.  ++ 
T Consensus       161 ~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~gWr~~f~i~g~l~l~~~l~~~~~~~~~p~~-----~~~~~--~~-  232 (476)
T PLN00028        161 NGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFTAWRIAFFVPGLLHIIMGILVLTLGQDLPDG-----NYREL--KK-  232 (476)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHcCcCCCC-----chhhH--Hh-
Confidence            99998877777777766654442    2     25899999999998887776666553321110     00000  00 


Q ss_pred             ccccccccCCcccccccchhhhhhhccccchhhhhhhhhhhhhhhHHhhcchhHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 014628          153 SEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGY  232 (421)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (421)
                                    +        ...++          .+..+.+++.++++++|...+..+........+..+.|.|+.
T Consensus       233 --------------~--------~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~  280 (476)
T PLN00028        233 --------------S--------GTMPK----------DSFSKVLRYGVTNYRTWILALTYGYSFGVELTMDNIIAEYFY  280 (476)
T ss_pred             --------------c--------Ccccc----------ccHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence                          0        00000          000123455677888887777666555556667788999998


Q ss_pred             HhhCCccchh-HHHhhhhHHHHHHhhhhhHHHhhhccccchh--hHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Q 014628          233 NIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNA--FKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGEL  309 (421)
Q Consensus       233 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  309 (421)
                      +..+.+.... .+..+..++.+++.++.|+++||++||...+  .........+..+.++.....++.+...+.+++.++
T Consensus       281 ~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~~~r~~~~~r~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~l~~~  360 (476)
T PLN00028        281 DRFGLSLETAGAIAASFGLMNLFARPAGGYLSDVAARRFGMRGRLWALWIVQTLGGVFCIWLGRANSLGAAIVVMILFSI  360 (476)
T ss_pred             HhcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHH
Confidence            8888876544 4456778899999999999999998763221  122222333332322333333333333444444455


Q ss_pred             HHHhccCchhhhhhcccCCchhhHHHHHHHHHHHhhcccCcchhHHHhhhc--cccchhhhHHHHHHHHHHHHHHHHh
Q 014628          310 LVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDH--VNNWRKTTLALTSIFFLAAGIWFVG  385 (421)
Q Consensus       310 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~--~g~~~~~~~~~~~~~~~~~~~~~~~  385 (421)
                      +.+...+....+..+ +.+++++++.|+.+.     ++.+++.+.+++.+.  .++|...|.+.+++.+++.++.+..
T Consensus       361 ~~~~~~~~~~~~~~~-~~~~~~g~~~g~~~~-----~g~lg~~i~~~l~~~~~~~~y~~~f~~~~~~~~i~~~~~~~~  432 (476)
T PLN00028        361 FVQAACGATFGIVPF-VSRRSLGVISGLTGA-----GGNVGAVLTQLLFFTGSSYSTETGISLMGVMIIACTLPVAFI  432 (476)
T ss_pred             HHHHhhhhhcccCcc-cChhhchhhhhhhhc-----cccHHHHHHHHHHHhcCCccHhhHHHHHHHHHHHHHHHHHhe
Confidence            444444444444444 456788988888743     333455555565543  3458788888877777766665544

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=100.00  E-value=1e-31  Score=243.49  Aligned_cols=312  Identities=14%  Similarity=0.101  Sum_probs=227.6

Q ss_pred             ccccchhhHHHHhhhhcCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhhhhhhhccchhhhhhccCCCCCchhH
Q 014628            2 VGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAW   81 (421)
Q Consensus         2 lg~~i~~~~~g~l~Dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~   81 (421)
                      ++..+++++.|+++||+|||+++..+.++.+++.++++++++++.+++.|+++|++.+...+...+++.|++|+|+|+++
T Consensus        66 ~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~a  145 (394)
T PRK10213         66 FVAMFASLFITQTIQATDRRYVVILFAVLLTLSCLLVSFANSFSLLLIGRACLGLALGGFWAMSASLTMRLVPPRTVPKA  145 (394)
T ss_pred             HHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCHhHHHHH
Confidence            35678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhhHHHhHHhhhhcchhHHHHHHHHHHHHHHHHHHHhcccccccccCCccccchhhhhhcccccccccC
Q 014628           82 LSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNL  161 (421)
Q Consensus        82 ~~~~~~~~~~G~~~g~~~~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (421)
                      +++...+.++|..++|.+++.+.+.+|||+.|++.++++++..+......||.++      +++..              
T Consensus       146 ~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~l~~~~~l~~~~~~p~~~~------~~~~~--------------  205 (394)
T PRK10213        146 LSVIFGAVSIALVIAAPLGSFLGELIGWRNVFNAAAVMGVLCIFWIIKSLPSLPG------EPSHQ--------------  205 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHCCCCCc------ccccc--------------
Confidence            9999999999999999999999999999999999887666544443333344210      00000              


Q ss_pred             CcccccccchhhhhhhccccchhhhhhhhhhhhhhhHHhhcchhHHHHHHHHHHHHHHHHHHHHHh-hHHHHHhhCCccc
Q 014628          162 NDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWG-PKAGYNIYHMSNA  240 (421)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~  240 (421)
                                                      .++.+..+++|.++...+..++..........+. |.+. +..+.++.
T Consensus       206 --------------------------------~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~-~~~g~s~~  252 (394)
T PRK10213        206 --------------------------------KQNTFRLLQRPGVMAGMIAIFMSFAGQFAFFTYIRPVYM-NLAGFGVD  252 (394)
T ss_pred             --------------------------------hhHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCChh
Confidence                                            0123356678888876665555555555656666 5554 45677755


Q ss_pred             hh-HHHhhhhHHHHHHhhhhhHHHhhhccccchhhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhccCchh
Q 014628          241 DM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVN  319 (421)
Q Consensus       241 ~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (421)
                      .. .......++.+++.++.+++.||.+++     .............+++....++.+......++.+++.+...+...
T Consensus       253 ~~g~~~~~~~~~~iig~~~~~~l~~r~~~~-----~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~G~~~~~~~~~~~  327 (394)
T PRK10213        253 GLTLVLLSFGIASFVGTSLSSFILKRSVKL-----ALAGAPLVLAVSALVLTLWGSDKIVATGVAIIWGLTFALVPVGWS  327 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccchh-----HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhHHHH
Confidence            44 334556678888888999999985433     333333333333333333344555555566677777777777777


Q ss_pred             hhhhcccCCchhhHHHHHHHHHHHhhcccCcchhHHHhhhccccchhhhHHHHHH
Q 014628          320 YVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSI  374 (421)
Q Consensus       320 ~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~  374 (421)
                      +.+.+..| ++++++.+......+. |..+||.+.|++.|..| +...+...+.+
T Consensus       328 ~~~~~~~~-~~~~~~~~~~~~~~~l-g~~~G~~l~G~l~~~~g-~~~~~~~~~~~  379 (394)
T PRK10213        328 TWITRSLA-DQAEKAGSIQVAVIQL-ANTCGAAIGGYALDNIG-LTSPLMLSGTL  379 (394)
T ss_pred             HHHHHHCc-ccHHHHHHHHHHHHHH-HHHHHHHHHHHHHhccC-hhhHHHHHHHH
Confidence            77888776 4566777766444444 88999999999999876 44555554443

>PRK15075 citrate-proton symporter; Provisional

Probab=100.00  E-value=5.9e-32  Score=248.75  Aligned_cols=306  Identities=14%  Similarity=0.135  Sum_probs=206.7

Q ss_pred             cchhhHHHHhhhhcCCchHHHHHHHHHHHHHhhhhhhhhHHH--------HHHHHHHhhhhhhhhccchhhhhhccCCCC
Q 014628            5 LVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWS--------IAICRMLVGVGEASFISLAAPFIDDNAPVP   76 (421)
Q Consensus         5 ~i~~~~~g~l~Dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~--------l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~   76 (421)
                      .+++++.|+++||+|||++++.+.+++.+++++++++++++.        ++++|+++|++.+...+....+++|++|++
T Consensus        70 ~ig~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~  149 (434)
T PRK15075         70 PLGAIVLGAYIDRVGRRKGLIVTLSIMASGTLLIAFVPGYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPG  149 (434)
T ss_pred             hhHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCcc
Confidence            467889999999999999999999999999999999999874        688999999999999998999999999999


Q ss_pred             CchhHHHHHHHHHHHHhhhHHHhHHhhh--------hcchhHHHHHHHHHHHHHHHHHHHhcccccccccCCccccchhh
Q 014628           77 QKTAWLSMFYMCIPTGVALGYVYGGVVG--------SHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQV  148 (421)
Q Consensus        77 ~r~~~~~~~~~~~~~G~~~g~~~~~~l~--------~~~~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~  148 (421)
                      +|++++++...+.++|..+++.+++.+.        +.+|||++|++..+..    +..++ .++.+     +|+++...
T Consensus       150 ~rg~~~~~~~~~~~~g~~~g~~~g~~l~~~~~~~~~~~~gWr~~f~~~~~~~----~~~~~-~~~~~-----~e~~~~~~  219 (434)
T PRK15075        150 RKGFYTSWQSASQQVAVVFAALLGYLLNQWLSPAQMAEWGWRIPFLIGCLIV----PFIFL-IRRSL-----EETEEFLA  219 (434)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHHHH----HHHHH-HHHhc-----CCCHHHHH
Confidence            9999999999998888888888777653        4679999999764332    11111 11111     11100000


Q ss_pred             hhhcccccccccCCcccccccchhhhhhhccccchhhhhhhhhhhhhhhHHhhcchhHHHH-HHHHHHHHHHHHHHHHHh
Q 014628          149 VASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVN-VLGYIAYNFVIGAYSYWG  227 (421)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~  227 (421)
                      .+.                           +.        +.+   +.++...+++..+.. .+..+.....++....|.
T Consensus       220 ~~~---------------------------~~--------~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (434)
T PRK15075        220 RKH---------------------------RP--------SMR---EIFRSLAANWRIVLAGMLMVAMTTVSFYLITVYT  261 (434)
T ss_pred             hhh---------------------------cc--------ccc---cHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            000                           00        000   012222333333332 222333455567788899


Q ss_pred             hHHHHHhhCCccchh-HHHhhhhHHHHHHhhhhhHHHhhhccccchhhHHHHHHHHHHHHHHH-HH-H--hhhhhHHHHH
Q 014628          228 PKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCL-TA-F--CLSSLYGFLA  302 (421)
Q Consensus       228 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~--~~~~~~~~~~  302 (421)
                      |.|+++..+.+..+. ....+..++++++.++.|+++||++||     +.............. .. .  ..++......
T Consensus       262 p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  336 (434)
T PRK15075        262 PTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALSDRIGRR-----PVLIAFTVLAILTAYPALSWLVAAPSFARMLA  336 (434)
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcch-----HHHHHHHHHHHHHHHHHHHHHHcCCchHHHHH
Confidence            999998878875544 334566778889999999999999988     544443322222111 11 1  1122222222


Q ss_pred             HHHHHHHHHHhccCchhhhhhcccCCchhhHHHHHHHHHHHhhcccCcchhHHHhhhcccc
Q 014628          303 LFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNN  363 (421)
Q Consensus       303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~g~  363 (421)
                      ...+.+++.+...+....+..|.+|++.|+++.++.+.....+++.++|.+.|++.|..|.
T Consensus       337 ~~~~~~~~~g~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i~~~~g~  397 (434)
T PRK15075        337 VELWLSFLYGSYNGAMVVALTEVMPAEVRTAGFSLAYSLATAIFGGFTPAISTWLIHVTGD  397 (434)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHCCCCccchheeHHHHHHHHHHhhhHHHHHHHHHHhcCC
Confidence            2333444555555556677889999999999999975555654567789999999998773

>PRK10091 MFS transport protein AraJ; Provisional

Probab=100.00  E-value=9.7e-32  Score=243.37  Aligned_cols=322  Identities=15%  Similarity=0.154  Sum_probs=229.0

Q ss_pred             ccccchhhHHHHhhhhcCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhhhhhhhccchhhhhhccCCCCCchhH
Q 014628            2 VGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAW   81 (421)
Q Consensus         2 lg~~i~~~~~g~l~Dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~   81 (421)
                      +++.++++++|+++||+|||+++..+.++.+++.+++++++|++.+++.|+++|++.+...+....++.|++|+++|+++
T Consensus        49 ~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~l~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (382)
T PRK10091         49 LGVVVGAPIIALFSSRYSLKHILLFLVALCVIGNAMFTLSSSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAA  128 (382)
T ss_pred             HHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHH
Confidence            56789999999999999999999999999999999999999999999999999999998888888999999999999999


Q ss_pred             HHHHHHHHHHHhhhHHHhHHhhhhcchhHHHHHHHHHHHHHHHHHHHhcccccccccCCccccchhhhhhcccccccccC
Q 014628           82 LSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNL  161 (421)
Q Consensus        82 ~~~~~~~~~~G~~~g~~~~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (421)
                      +++...+..+|..++|.+++.+.+..+||+.|++.+++.++..+..++..||.++.    ++.+ .              
T Consensus       129 ~~~~~~~~~~g~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~lp~~~~~----~~~~-~--------------  189 (382)
T PRK10091        129 VAGMVSGMTVANLLGIPLGTYLSQEFSWRYTFLLIAVFNIAVLASIYFWVPDIRDE----AKGG-L--------------  189 (382)
T ss_pred             HHHHHHHHHHHHHHhccHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhCCCCCcc----cccC-H--------------
Confidence            99999999999999999999999989999999999988777666555555653110    0000 0              


Q ss_pred             CcccccccchhhhhhhccccchhhhhhhhhhhhhhhHHhhcchhHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhCCccch
Q 014628          162 NDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNAD  241 (421)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (421)
                                                      .+.+ +.++++..+......++..........+.+.++.+..+.++..
T Consensus       190 --------------------------------~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~  236 (382)
T PRK10091        190 --------------------------------REQF-HFLRSPAPWLIFAATMFGNAGVFAWFSYIKPYMMFISGFSETS  236 (382)
T ss_pred             --------------------------------HHHH-HHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHH
Confidence                                            0011 2345565655554444444444455566777787777777654


Q ss_pred             h-HHHhhhhHHHHHHhhhhhHHHhhhccccchhhHHHHHHHHHHHHHHHHHH-hhhhhHHHHHHHHHHHHHHHhccCchh
Q 014628          242 M-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAF-CLSSLYGFLALFTVGELLVFATQAPVN  319 (421)
Q Consensus       242 ~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (421)
                      . .+.....++.+++.++.+++.||++++     +.+.....+..+..+... ..++.+...+..++.+.+.....++..
T Consensus       237 ~~~~~~~~~~~~~ig~~~~g~l~~r~~~~-----~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  311 (382)
T PRK10091        237 MTFIMMLVGLGMVLGNLLSGRLSGRYSPL-----RIAAVTDFIIVLALLMLFFFGGMKTASLIFAFICCAGLFALSAPLQ  311 (382)
T ss_pred             HHHHHHHHHHHHHHHhHHHheeccccCch-----hHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhHHHH
Confidence            4 444677788999999999999999987     555555444444433332 233333333344444444433333333


Q ss_pred             h-hhhcccCCchhhHHHHHHHHHHHhhcccCcchhHHHhhhccccchhhhHHHHHHHHHHHHHHH
Q 014628          320 Y-VCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFFLAAGIWF  383 (421)
Q Consensus       320 ~-~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~  383 (421)
                      . ...+..+++.++.+.  .+...+. |..+||.+.|++.|..++|...+...+....+......
T Consensus       312 ~~~~~~~~~~~~~~~~~--~~~~~~~-g~~~Gp~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~  373 (382)
T PRK10091        312 ILLLQNAKGGELLGAAG--GQIAFNL-GSAIGAYCGGMMLTLGLAYNYVALPAALLSFAAMSSLL  373 (382)
T ss_pred             HHHHHhCCcchHHHHHH--HHHHHHH-HHHHHHHHhHHHHHcccCcchHHHHHHHHHHHHHHHHH
Confidence            3 333434445555543  3344444 99999999999999877788888877666555554444

>PRK10489 enterobactin exporter EntS; Provisional

Probab=100.00  E-value=5.8e-32  Score=248.03  Aligned_cols=322  Identities=10%  Similarity=0.011  Sum_probs=230.8

Q ss_pred             ccccchhhHHHHhhhhcCCchHHHHHHHHHHHHHhhhhh-----hhhHHHHHHHHHHhhhhhhhhccchhhhhhccCCCC
Q 014628            2 VGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGS-----SFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVP   76 (421)
Q Consensus         2 lg~~i~~~~~g~l~Dr~Grr~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~   76 (421)
                      +++.+++++.|+++||+|||+++..+.++.+++.+..+.     .++++.+++.|+++|++.+...+...+++.|++|++
T Consensus        63 l~~~~~~~~~G~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  142 (417)
T PRK10489         63 GAMFIGLMVGGVLADRYDRKKLILLARGTCGLGFIGLALNAFLPEPSLLAIYLLGLWDGFFGSLGVTALLAATPALVGRE  142 (417)
T ss_pred             HHHHHHHHhhHHHhhhcCCceEEEehHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHH
Confidence            467789999999999999999999988887776665442     567899999999999999988888999999999999


Q ss_pred             CchhHHHHHHHHHHHHhhhHHHhHHhhhhcchhHHHHHHHHHHHHHHHHHHHhcccccccccCCccccchhhhhhccccc
Q 014628           77 QKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGS  156 (421)
Q Consensus        77 ~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~  156 (421)
                      +|+++.++.....++|..+||.+++.+.+..+|++.|++.++..++..++.+ ..|+.+++.   ++++           
T Consensus       143 ~~~~~~~~~~~~~~~g~~~g~~l~g~l~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~---~~~~-----------  207 (417)
T PRK10489        143 NLMQAGAITMLTVRLGSVISPALGGLLIAAGGVAWNYGLAAAGTFITLLPLL-RLPALPPPP---QPRE-----------  207 (417)
T ss_pred             HHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH-hCCCCCCCC---cccc-----------
Confidence            9999999999999999999999999999888999999988877665554433 335422110   0000           


Q ss_pred             ccccCCcccccccchhhhhhhccccchhhhhhhhhhhhhhhHHhhcchhHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhC
Q 014628          157 EASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYH  236 (421)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (421)
                                                     +..++..+.++.++++|.++...+..++.. .......+.|.|.++..+
T Consensus       208 -------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~p~~~~~~~g  255 (417)
T PRK10489        208 -------------------------------HPLRSLLAGFRFLLASPVVGGIALLGGLLT-MASAVRVLYPALADEVWQ  255 (417)
T ss_pred             -------------------------------cchHHHHHHHHHHHcChHHHHHHHHHHHHH-HHHhHHHhhHHHHHhccC
Confidence                                           000011233555667777666555444332 245667788999988777


Q ss_pred             Cccchh-HHHhhhhHHHHHHhhhhhHHHhhhccccchhhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhcc
Q 014628          237 MSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQ  315 (421)
Q Consensus       237 ~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  315 (421)
                      .++... .+.....++.+++.++.+++.||.+++     +.+..+..............++.+...+..++.+++.+...
T Consensus       256 ~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~-----~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  330 (417)
T PRK10489        256 MGAAQIGLLYAAVPLGAALGALTSGWLAHSARPG-----LLMLLSTLGSFLAVGLFGLMPMWILAVLCLALFGYLSAISS  330 (417)
T ss_pred             CChhHhHHHHHHHHHHHHHHHHHHHHhhhccCcc-----hHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHH
Confidence            775444 334566778888999999999886554     44444444444444444444555555555666666666555


Q ss_pred             CchhhhhhcccCCchhhHHHHHHHHHHHhhcccCcchhHHHhhhccccchhhhHHHHHHHHH
Q 014628          316 APVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFFL  377 (421)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~  377 (421)
                      +...+++.+..|++.|++++|+.+...+. |..++|.+.|++.|..|. ...+...+.+..+
T Consensus       331 ~~~~~~~~~~~p~~~~g~~~g~~~~~~~~-g~~~g~~l~G~l~~~~g~-~~~~~~~~~~~~~  390 (417)
T PRK10489        331 LLQYTLLQTQTPDEMLGRINGLWTAQNVT-GDAIGAALLGGLGAMMTP-VASASASGFGLLI  390 (417)
T ss_pred             HHHHHHHHhhCCHHHHHHHHHHHHHHHhh-hHhHHHHHHHHHHHHhch-hhHHHHHHHHHHH
Confidence            56677888999999999999999765555 999999999999998773 3455544444333

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=100.00  E-value=2.7e-32  Score=255.28  Aligned_cols=350  Identities=15%  Similarity=0.117  Sum_probs=211.9

Q ss_pred             ccccchhhHHHHhhhhcCCchHHHHHHHHHHHHHhhhhhh------------hhHHHHHHHHHHhhhhhhhhccchhhhh
Q 014628            2 VGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSS------------FDFWSIAICRMLVGVGEASFISLAAPFI   69 (421)
Q Consensus         2 lg~~i~~~~~g~l~Dr~Grr~~~~~~~~~~~~~~~~~~~~------------~~~~~l~~~r~l~G~~~~~~~~~~~~~i   69 (421)
                      +|.+++++++|+++||+|||++++.+.++..++.+.++++            ++++.++++|+++|++.|...+...+++
T Consensus        66 ig~~~~~~~~G~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i  145 (479)
T PRK10077         66 IGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIGGIGVGLASMLSPMYI  145 (479)
T ss_pred             HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHHhhhHhHHhhHHHHHH
Confidence            5788999999999999999999999999999998887763            2356788999999999999999999999


Q ss_pred             hccCCCCCchhHHHHHHHHHHHHhhhHHHhHHhhh--------hcchhHHHHHHHHHHHHHHHHHHHhcccccccccCCc
Q 014628           70 DDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVG--------SHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPA  141 (421)
Q Consensus        70 ~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~--------~~~~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~  141 (421)
                      +|++|+++|++++++.+.+..+|.++++.+++.+.        +.+|||+.|++.+++.++..+. .++.||++++...+
T Consensus       146 ~e~~~~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~-~~~l~~s~~~l~~~  224 (479)
T PRK10077        146 AEIAPAHIRGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNTDGWRYMFASEAIPALLFLML-LYFVPETPRYLMSR  224 (479)
T ss_pred             HhhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccCChHHHHHHHHHHHHHHHHH-HHcCCCCcHHHHHc
Confidence            99999999999999999999999999988776553        4568999999988877776544 44567765432111


Q ss_pred             cccchhhhhhcccccccccCCcccccccchhhhhhhccccchhhhhhhhhhhhhhhHHhhcchhHHHH---HHHHHHHHH
Q 014628          142 ESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVN---VLGYIAYNF  218 (421)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~  218 (421)
                      ++.++  .+...++....+   +..+..++..              +..++..+..+..+........   ....+....
T Consensus       225 ~~~~~--~~~~~~~~~~~~---~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  285 (479)
T PRK10077        225 GKQEQ--AEGILRKIMGNT---LATQALQEIK--------------HSLDHGRKTGGKLLMFGVGVIVIGVMLSVFQQFV  285 (479)
T ss_pred             CCHHH--HHHHHHHHcCCh---hHHHHHHHHH--------------HHHHHhhhhhhhhcchhHHHHHHHHHHHHHHHHh
Confidence            11110  000000000000   0000000000              0000000000001110000000   011111112


Q ss_pred             HHHHHHHHhhHHHHHhhCCccch-hHHHhhhhHHHHHHhhhhhHHHhhhccccchhhHHHHHHHHHHHHHHHHHHhh--h
Q 014628          219 VIGAYSYWGPKAGYNIYHMSNAD-MMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCL--S  295 (421)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~  295 (421)
                      .++...++.|.+.++ .+.+... ........+..+++.+++++++||++||     +.+..+..+..+........  .
T Consensus       286 ~~~~~~~~~p~i~~~-~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~r-----~~~i~~~~~~~v~~~~l~~~~~~  359 (479)
T PRK10077        286 GINVVLYYAPEIFKT-LGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRK-----PLQIIGALGMAIGMFSLGTAFYT  359 (479)
T ss_pred             ChhHHHHHHHHHHHH-cCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcCh-----HHHHHhHHHHHHHHHHHHHHHhc
Confidence            233445667777665 4554332 2334556677889999999999999998     66665555544444333211  1


Q ss_pred             h-h-HHHHHHHHHHHHHHHhc-cCchhhhhhcccCCchhhHHHHHHHHHHHhhcccCcchhHHHhh------hccccchh
Q 014628          296 S-L-YGFLALFTVGELLVFAT-QAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQ------DHVNNWRK  366 (421)
Q Consensus       296 ~-~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~------~~~g~~~~  366 (421)
                      + . .......++.+++.... .+..+.++.|.+|+++|++++|+.+...+. +.++++.+.+.+.      |..+ +..
T Consensus       360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~-g~~~~~~~~p~~~~~~~~~~~~~-~~~  437 (479)
T PRK10077        360 QAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWI-ANYFVSWTFPMMDKNSWLVAHFH-NGF  437 (479)
T ss_pred             CcccHHHHHHHHHHHHHHhccccchhHHHhHhhCChhHHHHHHHHHHHHHHH-HHHHHHHHhHHHHhccchhhhcc-Ccc
Confidence            1 1 12222233333333332 245678889999999999999999666555 7777766665444      4444 335


Q ss_pred             hhHHHHHHHHHHH
Q 014628          367 TTLALTSIFFLAA  379 (421)
Q Consensus       367 ~~~~~~~~~~~~~  379 (421)
                      .+++.+...+++.
T Consensus       438 ~~~~~~~~~~~~~  450 (479)
T PRK10077        438 SYWIYGCMGVLAA  450 (479)
T ss_pred             HHHHHHHHHHHHH
Confidence            5555554444333

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=100.00  E-value=2.4e-32  Score=248.22  Aligned_cols=333  Identities=15%  Similarity=0.172  Sum_probs=235.8

Q ss_pred             ccccchhhHHHHhhhhcCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhhhhhhhccchhhhhhccCCCCCchhH
Q 014628            2 VGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAW   81 (421)
Q Consensus         2 lg~~i~~~~~g~l~Dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~   81 (421)
                      +++.+++++.|+++||+|||+++..+.++.+++.++++++++++.+++.|++.|++.+...+...+++.|++|+++|+++
T Consensus        41 ~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~  120 (379)
T TIGR00881        41 IAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFSTSLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTW  120 (379)
T ss_pred             HHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhccccCCchHHHHHHhcCHhhheee
Confidence            45678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhhHH-HhHHhhhhcchhHHHHHHHHHHHHHHHHHHHhcccccccccCCccccchhhhhhccccccccc
Q 014628           82 LSMFYMCIPTGVALGY-VYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASN  160 (421)
Q Consensus        82 ~~~~~~~~~~G~~~g~-~~~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (421)
                      +++.+.+..+|..++| .++..+.+..+||+.|++.+++.++..++.++..||.++..+.++.++..             
T Consensus       121 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------  187 (379)
T TIGR00881       121 VSFWNCSHNVGGGLLPPLVLFGIAELYSWHWVFIVPGIIAIIVSLICFLLLRDSPQSCGLPPAEEMP-------------  187 (379)
T ss_pred             EeehhccchhHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHheeeCCCccccccCccccCc-------------
Confidence            9999999999999999 57777777889999999998887777776666666543321111000000             


Q ss_pred             CCcccccccchhhhhhhccccchhhhhhhhhhhhhhhHHhhcchhHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhCCccc
Q 014628          161 LNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNA  240 (421)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (421)
                       +++.++.    .+.++++.          +......+.++++|.++...+..++.......+..+.|.|+.+..+.++.
T Consensus       188 -~~~~~~~----~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  252 (379)
T TIGR00881       188 -NEEPDGD----AEKKEEEL----------TKKQIFLQYVLLNKVLWYISLGYVFVYVVRTGILDWSPLYLTQEKGFSKE  252 (379)
T ss_pred             -ccccccc----cccccccc----------cchHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH
Confidence             0000000    00000000          00012345667888888888888888888888889999999888888765


Q ss_pred             hh-HHHhhhhHHHHHHhhhhhHHHhhhccccchhhHHHHHHHHHHHHHHHHHHh--hhhhHHHHHHHHHHHHHHHhccCc
Q 014628          241 DM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFC--LSSLYGFLALFTVGELLVFATQAP  317 (421)
Q Consensus       241 ~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~  317 (421)
                      .. .......++.+++.++.+++.||..++++.  ...................  ..+.........+.+.+.....+.
T Consensus       253 ~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  330 (379)
T TIGR00881       253 KASWAFTLYELGGLVGTLLAGWLSDKLFNGRRG--PLAVFFMALIIVSLLVYWLNPAANPLMDLICLFALGFLVYGPQML  330 (379)
T ss_pred             HHHHHHHHHHHHcchhHHHHHHHHHHHcCCcch--HHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHhhhhHH
Confidence            44 344666788899999999999986543211  1111111111122222211  123333333334444444444444


Q ss_pred             hhhhhhcccCCchhhHHHHHHHHHHHhhcccCcchhHHHhhhccccchh
Q 014628          318 VNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRK  366 (421)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~  366 (421)
                      ......+.+|++.|+++.|+.+...+. |..++|.+.|.+.|..| |+.
T Consensus       331 ~~~~~~~~~~~~~~g~~~g~~~~~~~~-g~~~~~~~~g~l~~~~g-~~~  377 (379)
T TIGR00881       331 IGVIASELAPKKAAGTAAGFVGFFAYL-GGILAGLPLGYLADGFG-WAG  377 (379)
T ss_pred             HHHHHHHhcCcchhHHHHHHHHHhhhh-hhhhhhhhHHHHHHhhc-ccc
Confidence            566788889999999999999766666 88899999999999866 543

>PRK03699 putative transporter; Provisional

Probab=100.00  E-value=2.5e-31  Score=241.74  Aligned_cols=324  Identities=12%  Similarity=0.086  Sum_probs=234.5

Q ss_pred             ccccchhhHHHHhhhhcCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhhhhhhhccchhhhhhccCCCCCchhH
Q 014628            2 VGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAW   81 (421)
Q Consensus         2 lg~~i~~~~~g~l~Dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~   81 (421)
                      +++.+++++.|++.||+|||+++..+.++..++.++++++++++.+++.|+++|++.+...+...+++.|++|+++|+++
T Consensus        53 ~~~~i~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~  132 (394)
T PRK03699         53 AGILISIFLNAWLMEIIPLKRQLIFGFALMILAVAGLMFSHSLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQRGSR  132 (394)
T ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHhhHhhccchhHHhhhhcccchHHHH
Confidence            46788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhhHHHhHHhhhh-cchhHHHHHHHHHHHHHHHHHHHhcc-cccccccCCccccchhhhhhcccccccc
Q 014628           82 LSMFYMCIPTGVALGYVYGGVVGS-HLNWRYAFWGEAILMLPFAVLAFVIK-PLQLKGFAPAESGKAQVVASVSEGSEAS  159 (421)
Q Consensus        82 ~~~~~~~~~~G~~~g~~~~~~l~~-~~~wr~~f~~~~~~~~~~~~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (421)
                      ++..+....+|..++|.+.+.+.+ ..+||+.|.+.+++.++..++.++.. |+       +++++..            
T Consensus       133 ~~~~~~~~~~g~~~~~~~~~~l~~~~~gw~~~f~~~~~~~~~~~~~~~~~~~p~-------~~~~~~~------------  193 (394)
T PRK03699        133 LLFTDSFFSMAGMIFPIIAAYLLARSIEWYWVYACIGLVYVAIFILTLFSEFPA-------LGKHAPK------------  193 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHhcCCcc-------ccccCcc------------
Confidence            999999999999999999887754 57999999998887766655443321 11       0000000            


Q ss_pred             cCCcccccccchhhhhhhccccchhhhhhhhhhhhhhhHHhhcchhHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhCCcc
Q 014628          160 NLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSN  239 (421)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (421)
                      +.              + +.                 .+. ..++.++...+..++.....+.+..|.|.|+++.++.+.
T Consensus       194 ~~--------------~-~~-----------------~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~  240 (394)
T PRK03699        194 AD--------------K-PV-----------------AKE-KWGIGVLFLAIAALLYILAQLTFISWVPEYAQKKFGMSL  240 (394)
T ss_pred             cc--------------C-cc-----------------ccc-cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCh
Confidence            00              0 00                 000 013445555555666666677888999999988888886


Q ss_pred             chh-HHHhhhhHHHHHHhhhhhHHHhhhccccchhhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhccCch
Q 014628          240 ADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPV  318 (421)
Q Consensus       240 ~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (421)
                      .+. .+.....++..++.++.++++||+++|     +.+.....+...........++.+...+..++.+++.+..++..
T Consensus       241 ~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~-----~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~  315 (394)
T PRK03699        241 EDAGNLVSNFWMAYMVGMWIFSFIVRFFDLQ-----RILTVLAGLALVLMYLFVNTDDPSHLLYAILGLGFFSSAIYTTI  315 (394)
T ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHHHHhchh-----hHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHH
Confidence            544 444666788899999999999999998     55554444444444444334444444445555666666666666


Q ss_pred             hhhhhcccCCchhhHHHHHHHHHHHhhcccCcchhHHHhhhccccchhhhHHHHHHHHHHHHHHHHh
Q 014628          319 NYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFFLAAGIWFVG  385 (421)
Q Consensus       319 ~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~  385 (421)
                      .....+..| +.+++..+..+...+ +|..++|.+.|++.|..| +...++...++.+++.+..+..
T Consensus       316 ~~~~~~~~~-~~~~~~~g~~~~~~~-~g~~i~p~~~G~l~~~~g-~~~~~~~~~~~~~~~~~~~~~~  379 (394)
T PRK03699        316 ITLGSQQTK-VASPKLVNFILTCGT-IGTMLTFVVTSPIVAHFG-LQAALLTANGLYAVVFVMCILL  379 (394)
T ss_pred             HHHHHHHcc-CCCHHHHHHHHHhhh-HHHHHHHHHHHHHHHHhC-chhhhhhhHHHHHHHHHHHHHH
Confidence            666666554 445677787755555 499999999999999877 6677776666665555544433

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=100.00  E-value=4.7e-31  Score=241.25  Aligned_cols=310  Identities=13%  Similarity=0.035  Sum_probs=230.4

Q ss_pred             ccccchhhHHHHhhhhcCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhhhhhhhccchhhhhhccCCCCCchhH
Q 014628            2 VGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAW   81 (421)
Q Consensus         2 lg~~i~~~~~g~l~Dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~   81 (421)
                      +++.+++++.|+++||+|||+++..+..+..++.+++.++++++.+++.|+++|++.+...+...+++.|++|+++|.++
T Consensus        59 ~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~  138 (406)
T PRK15402         59 AGGMFLQWLLGPLSDRIGRRPVMLAGVAFFILTCLAILLAQSIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEADAIKI  138 (406)
T ss_pred             HHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhHHHHH
Confidence            46778899999999999999999999999999999999999999999999999999998888899999999999999999


Q ss_pred             HHHHHHHHHHHhhhHHHhHHhhhhcchhHHHHHHHHHHHHHHHHHHHhcccccccccCCccccchhhhhhcccccccccC
Q 014628           82 LSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNL  161 (421)
Q Consensus        82 ~~~~~~~~~~G~~~g~~~~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (421)
                      +++......+|..++|.+++.+.++.+||+.|++.+++.++..+..++..||+.++.+  ++.                 
T Consensus       139 ~~~~~~~~~~~~~~g~~i~~~l~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-----------------  199 (406)
T PRK15402        139 TALMANVALLAPLLGPLVGAALIHVLPWRGMFVLFAALAALSFFGLWRAMPETAGRVG--EKL-----------------  199 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHhCCCCCcccc--ccc-----------------
Confidence            9999998899999999999999998999999999988877766655555565321100  000                 


Q ss_pred             CcccccccchhhhhhhccccchhhhhhhhhhhhhhhHHhhcchhHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhCCccch
Q 014628          162 NDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNAD  241 (421)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (421)
                                                 +.++..++++.++++|.++...+...+..........+.|.++.+..+.++..
T Consensus       200 ---------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~  252 (406)
T PRK15402        200 ---------------------------SLKELGRDYKLVLKNRRFVAGALALGLVSLPLLAWIALSPVILISGEQLSSYE  252 (406)
T ss_pred             ---------------------------cHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCHHH
Confidence                                       00111234567788898888777666666666666777888888877777654


Q ss_pred             hHH-HhhhhHHHHHHhhhhhHHHhhhccccchhhHHHHHHHHHHHHHHHHHHh-----hhhhHHHHHHHHHHHHHHHhcc
Q 014628          242 MMF-GGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFC-----LSSLYGFLALFTVGELLVFATQ  315 (421)
Q Consensus       242 ~~~-~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~  315 (421)
                      ... .....++.+++.++.+++.||+++|     +.+................     ..+.+.......+.+++.+...
T Consensus       253 ~g~~~~~~~~~~~~g~~~~g~l~~r~~~~-----~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~  327 (406)
T PRK15402        253 YGLLQVPVFGALIAGNLTLARLTSRRPLR-----SLIRMGLWPMVAGLLLAALATVISSHAYLWLTAGLSLYAFGIGLAN  327 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCHH-----HHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHh
Confidence            433 2344567788899999999999887     5554444433333222221     1233334455556666666655


Q ss_pred             CchhhhhhcccCCchhhHHHHHHHHHHHhhcccCcchhHHHhhhccccc
Q 014628          316 APVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNW  364 (421)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~g~~  364 (421)
                      +........ .++++++++.+..+..... +..+|+.+.+.+.+..+.+
T Consensus       328 ~~~~~~~~~-~~~~~~g~~~~~~~~~~~~-~~~~g~~~~~~l~~~~~~~  374 (406)
T PRK15402        328 AGLYRLTLF-SSDVSKGTVSAAMGMLSML-IFTVGIELSKHAYLGGGNG  374 (406)
T ss_pred             hhHHHHHhh-hccccccHHHHHHHHHHHH-HHHHHHHHHHhcccCCchH
Confidence            555554443 3458999999999766655 8888999999998877644

>PRK12307 putative sialic acid transporter; Provisional

Probab=100.00  E-value=1.6e-31  Score=246.17  Aligned_cols=316  Identities=14%  Similarity=0.105  Sum_probs=215.1

Q ss_pred             ccccchhhHHHHhhhhcCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhhhhhhhccchhhhhhccCCCCCchhH
Q 014628            2 VGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAW   81 (421)
Q Consensus         2 lg~~i~~~~~g~l~Dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~   81 (421)
                      +++.+++++.|+++||+|||+++..+.++.+++.++++++++++.++++|+++|++.+...+....++.|++|+|+|+++
T Consensus        64 ~~~~l~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~  143 (426)
T PRK12307         64 IGRPFGGALFGLLADKFGRKPLMMWSIVAYSVGTGLSGLASGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKA  143 (426)
T ss_pred             HHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHh
Confidence            56788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhhHHHhHHhhhhcchhHHHHHHHHHHHHHHHHHHHhcccccccccCCccccchhhhhhcccccccccC
Q 014628           82 LSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNL  161 (421)
Q Consensus        82 ~~~~~~~~~~G~~~g~~~~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (421)
                      +++...+..+|.++++.+.+.+.+..+||+.|++..+..++ .+......||+.++         ...+.     ++..+
T Consensus       144 ~~~~~~~~~lg~~~~~~l~~~l~~~~~w~~~f~i~~~~~~~-~~~~~~~~p~~~~~---------~~~~~-----~~~~~  208 (426)
T PRK12307        144 SAFLVSGFGIGNIIAAYFMPSFAEAYGWRAAFFVGLLPVLL-VIYIRARAPESKEW---------EEAKL-----SGKGK  208 (426)
T ss_pred             hhHHHHHHhHHHHHHHHHHHHHcccCCHHHHHHHHHHHHHH-HHHHHHHCCCChHH---------HHhhh-----hcccc
Confidence            99999999999999999999998889999999986433222 11111111221110         00000     00000


Q ss_pred             CcccccccchhhhhhhccccchhhhhhhhhhhhhhhHHhhcchhHHHHHHHHHH---HHHHHHHHHHHhhHHHHHhhCCc
Q 014628          162 NDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIA---YNFVIGAYSYWGPKAGYNIYHMS  238 (421)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~  238 (421)
                                     +.+        ..+++...+.+++++++.++........   .....+.+..++|.|+++. +.+
T Consensus       209 ---------------~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~  264 (426)
T PRK12307        209 ---------------HSQ--------SAWSVFSLSMKGLFNRAQFPLTLCVFIVLFSIFGANWPIFGLLPTYLAGE-GFD  264 (426)
T ss_pred             ---------------ccc--------cchhhhhHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCC
Confidence                           000        0000111235566777776554432222   2223334567889888874 555


Q ss_pred             cchh-HHHhhhhHHHHHHhhhhhHHHhhhccccchhhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH--Hhcc
Q 014628          239 NADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLV--FATQ  315 (421)
Q Consensus       239 ~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~  315 (421)
                      +... .......++.+++.++.+++.||++||     +....+.++..+..+...............++.+.+.  ....
T Consensus       265 ~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  339 (426)
T PRK12307        265 TGVVSNLMTAAAFGTVLGNIVWGLCADRIGLK-----KTFSIGLLMSFLFIFPLFRIPQDNYLLLGACLFGLMATNVGVG  339 (426)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-----HHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhcccHh
Confidence            4333 334566788899999999999999987     5555555444443333322221111111222222211  1222


Q ss_pred             CchhhhhhcccCCchhhHHHHHHHHHHHhhcccCcchhHHHhhhccc
Q 014628          316 APVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVN  362 (421)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~g  362 (421)
                      +.....+.+.+|++.|++++|+.+...+. ++.++|.+.|++.+..|
T Consensus       340 ~~~~~~~~~~~p~~~~g~~~g~~~~~~~~-~~~~gp~~~g~l~~~~g  385 (426)
T PRK12307        340 GLVPKFLYDYFPLEVRGLGTGLIYNLAAT-SGTFNSMAATWLGITMG  385 (426)
T ss_pred             HHHHHHHHHhCcHHHHhhhhhHHHHHHhH-HHHHHHHHHHHHHHccc
Confidence            34556778999999999999999766666 88899999999999876

>TIGR00891 2A0112 putative sialic acid transporter

Probab=100.00  E-value=1.3e-31  Score=245.52  Aligned_cols=337  Identities=11%  Similarity=0.063  Sum_probs=228.0

Q ss_pred             ccccchhhHHHHhhhhcCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhhhhhhhccchhhhhhccCCCCCchhH
Q 014628            2 VGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAW   81 (421)
Q Consensus         2 lg~~i~~~~~g~l~Dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~   81 (421)
                      ++..+++++.|+++||+|||+++..+.++.+++.++++++++++.+++.|++.|++.+...+...+++.|++|+++|+++
T Consensus        58 ~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~  137 (405)
T TIGR00891        58 ISRWFGALMFGLWGDRYGRRLPMVTSIVLFSAGTLACGFAPGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKA  137 (405)
T ss_pred             HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHH
Confidence            46788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhhHHHhHHhhhhcch--hHHHHHHHHHHHHHHHHHHHhcccccccccCCccccchhhhhhcccccccc
Q 014628           82 LSMFYMCIPTGVALGYVYGGVVGSHLN--WRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEAS  159 (421)
Q Consensus        82 ~~~~~~~~~~G~~~g~~~~~~l~~~~~--wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (421)
                      +++.+.+..+|.++++.+++.+.+..+  ||+.|++.+++.++.. +.....||++++.+++++.+..            
T Consensus       138 ~~~~~~~~~~g~~~~~~l~~~l~~~~~~~w~~~f~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~------------  204 (405)
T TIGR00891       138 SGLLISGYAVGAVVAAQVYSLVVPVWGDGWRALFFISILPIIFAL-WLRKNIPEAEDWKEKHAGKALV------------  204 (405)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHH-HHHHhCCCChhHHHHhhhhhhh------------
Confidence            999999999999999999999887766  9999998765544433 3333345532211000000000            


Q ss_pred             cCCcccccccchhhhhhhccccchhhhhhhhhhhhhhhHHhh--cchhHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhCC
Q 014628          160 NLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLL--QEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHM  237 (421)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (421)
                            .+..++....++..+       ...++.....+...  +.+.+..........+........+.|.|+.+..+.
T Consensus       205 ------~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  271 (405)
T TIGR00891       205 ------RTMVDILYGGEHRIA-------NIVMTLAAAMVQSAGKRWPTFVYLVVLVLFANLYSHPIQDLLPTYLKADLGL  271 (405)
T ss_pred             ------hhHHHHHhccchhhh-------hhhhhhhHHhhhhhhhhhHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHhCC
Confidence                  000000000000000       00000001111111  111122223333333444556667889999888887


Q ss_pred             ccchh-HHHhhhhHHHHHHhhhhhHHHhhhccccchhhHHHHHHHHHHHHHHH-HHHhhhhhHHHHHHHHHHHHHHHhcc
Q 014628          238 SNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCL-TAFCLSSLYGFLALFTVGELLVFATQ  315 (421)
Q Consensus       238 ~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  315 (421)
                      +..+. .+.....++.+++.++.+++.||+++|     +.+..+......... .....++.+...+..++.+++.....
T Consensus       272 s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~g~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  346 (405)
T TIGR00891       272 SPHTVANIVVFSNIGAIVGGCVFGFLGDWLGRR-----KAYVCSLLAGQLLIIPVFAIGANVAVLGLGLFFQQMLVQGIW  346 (405)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCch-----hhhHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHccch
Confidence            76544 344667788899999999999999998     555544443322222 22222333334444345555555666


Q ss_pred             CchhhhhhcccCCchhhHHHHHHHHHHHhhcccCcchhHHHhhhccccchhhhHH
Q 014628          316 APVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLA  370 (421)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~  370 (421)
                      +.....+.+.+|++.|++++|+.+...+. |..++|.+.|.+.|+.|.|...+..
T Consensus       347 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-g~~~g~~~~g~l~~~~g~~~~~~~~  400 (405)
T TIGR00891       347 GILPKHLGEYFPTDQRAAGLGFTYQLGNL-GGALAPIIGALLAQRLDEYGTALAS  400 (405)
T ss_pred             hhHHHHHhhhCCcchhHHHhhHHHHHHHH-HHHHHHHHHHHHHHhccccchhHHh
Confidence            67778889999999999999999776666 8899999999999998877554443

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=100.00  E-value=5.7e-31  Score=239.11  Aligned_cols=302  Identities=14%  Similarity=0.112  Sum_probs=217.3

Q ss_pred             ccchhhHHHHhhhhcCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhhhhhhhccchhhhhhccCCCCCchhHHH
Q 014628            4 LLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLS   83 (421)
Q Consensus         4 ~~i~~~~~g~l~Dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~   83 (421)
                      ..+.+++.|+++||+|||+++..+.++..++.+++.++++++.+++.|+++|++.+...+...+++.|++|+++|+++++
T Consensus        59 ~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~  138 (400)
T PRK11646         59 QQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMAIAHEPWLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQRGRFFS  138 (400)
T ss_pred             HHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence            34557899999999999999999999999999999999999999999999999999888999999999999999999999


Q ss_pred             HHHHHHHHHhhhHHHhHHhhhhcchhHHHHHHHHHHHHHHHHHHHhcccccccccCCccccchhhhhhcccccccccCCc
Q 014628           84 MFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLND  163 (421)
Q Consensus        84 ~~~~~~~~G~~~g~~~~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (421)
                      +.+...++|..+||.+++.+. .++||+.|++.++..++..++..+..||...      +++..                
T Consensus       139 ~~~~~~~~g~~ig~~l~g~l~-~~g~~~~f~~~~~~~~~~~i~~~~~~~~~~~------~~~~~----------------  195 (400)
T PRK11646        139 LLMMQDSAGAVIGALLGSWLL-QYDFRLVCATGAVLFVLAAAFNAWLLPAYKL------STVRT----------------  195 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHHHhCCcccc------cccch----------------
Confidence            999999999999999999998 6799999999988776665555444444110      00000                


Q ss_pred             ccccccchhhhhhhccccchhhhhhhhhhhhhhhHHhhcchhHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhCCccchhH
Q 014628          164 HVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADMM  243 (421)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (421)
                                                  +..+++++++++|.++...+..+...........+.|.|.++.++.+.....
T Consensus       196 ----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~  247 (400)
T PRK11646        196 ----------------------------PVREGMTRVLRDKRFVTYVLTLTGYYMLAVQVMLMLPIMVNDIAGSPSAVKW  247 (400)
T ss_pred             ----------------------------hhHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHhhhhhHHhhcCCchHHHH
Confidence                                        0012345666777777655544444444444556789998887664432223


Q ss_pred             HHhhhhHHHHHHhhhhhHHHhh-hccccchhhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhccCchhhhh
Q 014628          244 FGGVTIVCGIVGTISGGFILDQ-MGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVC  322 (421)
Q Consensus       244 ~~~~~~~~~~~~~~~~g~l~d~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (421)
                      ......+....+....+++.|| .+.+     +.+..+..+...........++.+...+...+.+.+.+...+...+..
T Consensus       248 l~~~~~~~~~~~~~~~~~~~~~r~~~~-----~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~g~~~~~p~~~~~~  322 (400)
T PRK11646        248 MYAIEACLSLTLLYPIARWSEKRFRLE-----HRLMAGLLIMSLSMFPIGMVSNLQQLFTLICLFYIGSIIAEPARETLS  322 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcchh-----HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHccHHHHH
Confidence            3344444444444444555554 4433     333333333333333333444444444445556666667777788889


Q ss_pred             hcccCCchhhHHHHHHHHHHHhhcccCcchhHHHhhhccc
Q 014628          323 LHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVN  362 (421)
Q Consensus       323 ~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~g  362 (421)
                      .+..|+++|+++.|+.+...+. |..+||.+.|++.|..+
T Consensus       323 ~~~~p~~~~g~~~g~~~~~~~~-g~~ig~~l~G~l~~~~~  361 (400)
T PRK11646        323 ASLADARARGSYMGFSRLGLAL-GGAIGYIGGGWLFDLGK  361 (400)
T ss_pred             HhcCCcccchhhhhHHHHHHHH-HHHhcccchHHHHHHHh
Confidence            9999999999999999766666 99999999999999864

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=100.00  E-value=1.7e-31  Score=249.14  Aligned_cols=342  Identities=13%  Similarity=0.081  Sum_probs=242.9

Q ss_pred             ccccchhhHHHHhhhhcCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhhhhhhhccchhhhhhccC-CCCCchh
Q 014628            2 VGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNA-PVPQKTA   80 (421)
Q Consensus         2 lg~~i~~~~~g~l~Dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~-~~~~r~~   80 (421)
                      ++++++.+++|+++||+|||++++.+.+++.++++++++++|++.++++|+++|+|.+...+.....+.+++ |+++|++
T Consensus        52 l~~~~~~~~~G~l~D~~Grk~~l~~~~~~~~~~~~~~~~a~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~  131 (495)
T PRK14995         52 LVMAGMVLPMGALGDRIGFKRLLMLGGTLFGLASLAAAFSPTASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNM  131 (495)
T ss_pred             HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            456788999999999999999999999999999999999999999999999999999999888888887765 6788999


Q ss_pred             HHHHHHHHHHHHhhhHHHhHHhhhhcchhHHHHHHHHHHHHHHHHHHHhcccccccccCCccccchhhhhhc-------c
Q 014628           81 WLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASV-------S  153 (421)
Q Consensus        81 ~~~~~~~~~~~G~~~g~~~~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~-------~  153 (421)
                      +++++.....+|..+||.+++.+.++.+|||.|++...+.++..++.++..|+.+++.  +++.+.......       .
T Consensus       132 ~~g~~~~~~~~g~~~gp~lgg~l~~~~gwr~~f~i~~~~~~~~~~l~~~~l~~~~~~~--~~~~d~~g~~~~~~~~~~l~  209 (495)
T PRK14995        132 ALGVWAAVGSGGAAFGPLVGGILLEHFYWGSVFLINVPIVLVVMGLTARYVPRQAGRR--DQPLNLGHALMLIVAILLLV  209 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHhCCCCCCCC--CCCCChHhHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999998887777776666667643211  111110000000       0


Q ss_pred             cccccccCCcccccccchh--------hhhhhccccchhhhhhhhhhhhhhhHHhhcchhHHHHHHHHHHHHHHHHHHHH
Q 014628          154 EGSEASNLNDHVSEDISDQ--------ASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSY  225 (421)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  225 (421)
                      ...................        ......+.        +.++...+ .+++++|.+....+..++.....++...
T Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~f~~~e~--------~~~~p~~~-~~lf~~~~~~~~~~~~~~~~~~~~~~~~  280 (495)
T PRK14995        210 YSAKTALKGFLSLWVTSLTLLTGALLLGLFIRTQL--------AASRPMID-MRLFTHRIILSGVVMAMTAMITLVGFEL  280 (495)
T ss_pred             HHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHh--------cCCCCCcC-HHHhCCcccHHHHHHHHHHHHHHHHHHH
Confidence            0000000000000000000        00000000        00011112 3567888888877777777777888888


Q ss_pred             HhhHHHHHhhCCccchhHH-HhhhhHHHHHHhhhhhHHHhhhccccchhhHHHHHHHHHHHHHHHHHHh---hhhhHHHH
Q 014628          226 WGPKAGYNIYHMSNADMMF-GGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFC---LSSLYGFL  301 (421)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~  301 (421)
                      +.|.|+++.++.++....+ .....++..++.++.|++.||+++|     +.+..+..+..+.......   .++.+...
T Consensus       281 ~~~~~lq~v~g~s~~~ag~~~~~~~~~~~~~~~~~g~l~~r~g~~-----~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~  355 (495)
T PRK14995        281 LMAQELQFVHGLSPLEAGMFMLPVMVASGFSGPIAGILVSRLGLR-----LVATGGMALSALSFYGLAMTDFSTQQWQAW  355 (495)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCch-----HHHHHHHHHHHHHHHHHHHhcCCCchHHHH
Confidence            9999999999998766644 3556678889999999999999987     5555444444433332221   12344445


Q ss_pred             HHHHHHHHHHHhccCchhhhhhcccCCchhhHHHHHHHHHHHhhcccCcchhHHHhhhc
Q 014628          302 ALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDH  360 (421)
Q Consensus       302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~  360 (421)
                      ...++.+++.+...++......+.+|+++++.+.++.+...+. |..+|+.+.|.+.++
T Consensus       356 ~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l-G~~~G~ai~g~i~~~  413 (495)
T PRK14995        356 GLMALLGFSAASALLASTSAIMAAAPPEKAAAAGAIETMAYEL-GAGLGIAIFGLLLSR  413 (495)
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHhcCCHHhcchHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence            5667778888888888888888999999999999999766666 888899899888764

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=100.00  E-value=7.6e-32  Score=243.44  Aligned_cols=349  Identities=15%  Similarity=0.156  Sum_probs=259.3

Q ss_pred             ccccchhhHHHHhhhhcCCchHHHHHHHHHHHHHhhhhhhh--hHHHHHHHHHHhhhhhhhhccchhhhhhccCCCCCch
Q 014628            2 VGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSF--DFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKT   79 (421)
Q Consensus         2 lg~~i~~~~~g~l~Dr~Grr~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~   79 (421)
                      .|+++++++.|+++||+|.|+++..+.++.++++++...+.  +++.+++.|++||++.|..+|+...+.++|.|++||+
T Consensus        84 ~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~~~~~~~~~R~lqGl~~g~~~pa~~~i~~~W~P~~Ers  163 (466)
T KOG2532|consen   84 WGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASIGFYLLLVLRFLQGLGQGVLFPAIGSILAKWAPPNERS  163 (466)
T ss_pred             HHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHhHHHHhHHHhhhhceeeeECCHHHHH
Confidence            58899999999999999999999999999999999998775  4567799999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHhhhHHHhHHhhhhc-chhHHHHHHHHHHHHHHHHHHHhcccccccccCCccccchhhhhhccccccc
Q 014628           80 AWLSMFYMCIPTGVALGYVYGGVVGSH-LNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEA  158 (421)
Q Consensus        80 ~~~~~~~~~~~~G~~~g~~~~~~l~~~-~~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (421)
                      +..++..++..+|.+++.+++|.+.+. +||+++|++.++++++..++++++..|++.+++.-.+++ .           
T Consensus       164 ~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~~~~d~P~~h~~is~~E-l-----------  231 (466)
T KOG2532|consen  164 TFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFILWFLFYSDSPSKHPNISEKE-L-----------  231 (466)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCHHH-H-----------
Confidence            999999999999999999999999988 999999999999999988888777655433311111000 0           


Q ss_pred             ccCCcccccccchhhhhhhccccchhhhhhhhhhhhhhhHHhhcchhHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhCCc
Q 014628          159 SNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMS  238 (421)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (421)
                              +.+++...++..+++           ...+++++++++.+|...+..++.+...+.+..|+|.|+++..+++
T Consensus       232 --------~~I~~~k~~~~~~~~-----------~~vP~~~i~ts~~vwai~~~~f~~~~~~~~l~~y~PtY~~~VL~f~  292 (466)
T KOG2532|consen  232 --------KYIEKGKSEAHVKKK-----------PPVPYKAILTSPPVWAIWISAFGGNWGFYLLLTYLPTYLKEVLGFD  292 (466)
T ss_pred             --------HHHHhcccccccCCC-----------CCCCHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCC
Confidence                    000111000000000           1247899999999999999999999999999999999999999999


Q ss_pred             cchh-HHHhhhhHHHHHHhhhhhHHHhhhcccc---chhhHHH-HHHHHHHHHHHHHHHhhh--hhHHHHHHHHHHHHHH
Q 014628          239 NADM-MFGGVTIVCGIVGTISGGFILDQMGATI---SNAFKLL-SAATFLGAISCLTAFCLS--SLYGFLALFTVGELLV  311 (421)
Q Consensus       239 ~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~---~~~~~~~-~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~  311 (421)
                      ..+. .+.+++.+...+..+++|.++||+.+|.   ...++.. .++....++.++.+...+  +.+..++++.+.....
T Consensus       293 v~~~G~~salP~l~~~~~k~~~g~lsD~l~~~~ls~t~~rkifn~i~~~~~ai~l~~l~~~~~~~~~~a~~~l~~~~~~~  372 (466)
T KOG2532|consen  293 VRETGFLSALPFLAMAIVKFVAGQLSDRLTFRILSETTVRKIFNTIAFGGPAVFLLVLAFTSDEHRLLAVILLTIAIGLS  372 (466)
T ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCchHhHHHHHHhHHHHHHHHHHHeeeecCCCcchHHHHHHHHHHHHc
Confidence            7665 5568999999999999999999987741   1123443 333344444444444333  2223333333333333


Q ss_pred             HhccCchhhhhhcccCCchhhHHHHHHHHHHHhhcccCcchhHHHhhh-c-cccchhhhHHHHHHHHHHHHHHH
Q 014628          312 FATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQD-H-VNNWRKTTLALTSIFFLAAGIWF  383 (421)
Q Consensus       312 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~-~-~g~~~~~~~~~~~~~~~~~~~~~  383 (421)
                      +.. ............|++.+..+|+.+..... .++++|.+.|.+.. . ...|+..|++.+++.+++.+++.
T Consensus       373 g~~-~~Gf~~~~~~~apq~a~~l~g~~~~~~~~-~~~~~P~~vg~~~~~~t~~eW~~VF~i~a~i~~~~~i~f~  444 (466)
T KOG2532|consen  373 GFN-ISGFYKNHQDIAPQHAGFVMGIINFVGAL-AGFIAPLLVGIIVTDNTREEWRIVFLIAAGILIVGNIIFL  444 (466)
T ss_pred             ccc-hhhhHhhhhhccchHHHHHHHHHHHHHHH-HHHHHHHheeeEeCCCCHHHHHHHHHHHHHHHHHhchhee
Confidence            333 22333333332578999999999877776 77889999999984 1 23688888888877777665443

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=100.00  E-value=3.8e-31  Score=243.70  Aligned_cols=350  Identities=12%  Similarity=0.073  Sum_probs=232.2

Q ss_pred             ccccchhhHHHHhhhhcCCchHHHHHHHHHHHHHhhhhhh----hhHHHHHHHHHHhhhhhhhhccchhhhhhccCCCCC
Q 014628            2 VGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSS----FDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQ   77 (421)
Q Consensus         2 lg~~i~~~~~g~l~Dr~Grr~~~~~~~~~~~~~~~~~~~~----~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~   77 (421)
                      ++..+++++.|+++||+|||+++..+.++.+++.++.++.    ++++.+.+.|++.|++.+..++....++.|++|+++
T Consensus        72 ~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~  151 (438)
T TIGR00712        72 IAYGFSKFIMGSVSDRSNPRVFLPAGLILSAAVMLLMGFVPWATSSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSE  151 (438)
T ss_pred             HHHHHhhhccchhhhccCCceehHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCccc
Confidence            4677899999999999999999999999999998887764    467788899999999999988889999999999999


Q ss_pred             chhHHHHHHHHHHHHhhhHHHhHHhhh-hcchhHHHHHHHHHHHHHHHHHHHhcccccccccCCccccchhhhhhccccc
Q 014628           78 KTAWLSMFYMCIPTGVALGYVYGGVVG-SHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGS  156 (421)
Q Consensus        78 r~~~~~~~~~~~~~G~~~g~~~~~~l~-~~~~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~  156 (421)
                      |++++++++.+.++|..+++.+.+... ++.+||+.|++.++++++..+..+++.||.+++.+.++.++.          
T Consensus       152 rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~w~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~----------  221 (438)
T TIGR00712       152 RGTIVSIWNCAHNIGGGIPPLLVLLGMAWFNDWHAALYFPAICAIIVALFAFAMMRDTPQSCGLPPIEEY----------  221 (438)
T ss_pred             chhHHHHHHHHHHhHhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhccCCHHhcCCCCchhc----------
Confidence            999999999999999999988776544 456899999999988888777666666664432110000000          


Q ss_pred             ccccCCcccccccchhhhhhhccccchhhhhhhhhhhhhhhHHhhcchhHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhC
Q 014628          157 EASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYH  236 (421)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (421)
                      +++..    .+ ..++     .+.+      .+.++.  ..+.+++++.++...+..++.....+++.+|.|.|+++..+
T Consensus       222 ~~~~~----~~-~~~~-----~~~~------~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g  283 (438)
T TIGR00712       222 RNDYP----DD-YNEK-----AEQE------LTAKEI--FMQYVLPNKLLWYIAIANVFVYLLRYGVLDWSPTYLKEVKH  283 (438)
T ss_pred             ccccc----cc-cccc-----cccc------cchHHH--HHHHHccCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHccC
Confidence            00000    00 0000     0000      000011  11246788888888777777777777888999999998878


Q ss_pred             Cccchh-HHHhhhhHHHHHHhhhhhHHHhhhccccchhhHHHHH-HHHHHHHHHHHHHh--hhhhHHHHHHHHHHHHHHH
Q 014628          237 MSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSA-ATFLGAISCLTAFC--LSSLYGFLALFTVGELLVF  312 (421)
Q Consensus       237 ~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~  312 (421)
                      .++... ....+..+.++++.++.+++.||++++++   ..... .........+....  ..+.+......+..+++..
T Consensus       284 ~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  360 (438)
T TIGR00712       284 FALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFKGNR---GATGVFFMTLVTIAVIVYWMNPAGNPLVDMICMIVIGFLIY  360 (438)
T ss_pred             CChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCcc---cHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHc
Confidence            776544 33456667889999999999999965421   11111 11111111111111  1122222222222222221


Q ss_pred             hccCchhhhhhcccCCchhhHHHHHHHHHHHhhcccCcchhHHHhhhccccchhhhHHHHHHHHHHHHHHH
Q 014628          313 ATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFFLAAGIWF  383 (421)
Q Consensus       313 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~  383 (421)
                      ...........+.+|++.|+++.|+.+...+..|.+++|.+.|.+.|..| |...+.+..+..+++.+..+
T Consensus       361 ~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~gg~~~gp~l~G~l~~~~g-~~~~~~~~~~~~~~~~~~~~  430 (438)
T TIGR00712       361 GPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFG-WDGGFMVMIGGSILAVILLI  430 (438)
T ss_pred             cHHHHHHHHHHHhcChhheeeehhhhchHHHhhhhhhcchhHHHHHHhcc-chHHHHHHHHHHHHHHHHHH
Confidence            11111123566888889999999999766666345689999999999876 77777766665555544443

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=100.00  E-value=1.1e-31  Score=251.66  Aligned_cols=364  Identities=13%  Similarity=0.110  Sum_probs=226.6

Q ss_pred             ccccchhhHHHHhhhhcCCchHHHHHHHHHHHHHhhhhhh---hhHHHHHHHHHHhhhhhhhhccchhhhhhccCCCCCc
Q 014628            2 VGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSS---FDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQK   78 (421)
Q Consensus         2 lg~~i~~~~~g~l~Dr~Grr~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r   78 (421)
                      ++.+++++++|+++||+|||++++.+.+++.++.+++.++   .+++.+++.|+++|++.+...+...+++.|++|+++|
T Consensus        82 ~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r  161 (481)
T TIGR00879        82 VGGFIGALFAGWLSDRFGRKKSLLIIALLFVIGAILMGLAAFALSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKALR  161 (481)
T ss_pred             HHHHHHHHHhhHhhhhhhhHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHhHHHHHHHccCChhhh
Confidence            4678999999999999999999999999999999998554   4456899999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHhhhHHHhH---HhhhhcchhHHHHHHHHHHHHHHHHHHHhcccccccccCCccccchhhhhhcccc
Q 014628           79 TAWLSMFYMCIPTGVALGYVYG---GVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEG  155 (421)
Q Consensus        79 ~~~~~~~~~~~~~G~~~g~~~~---~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~  155 (421)
                      ++++++++.+..+|..+++.++   ....+..+||+.|++.++..++.. +..++.||+++....+++.+..  .+...+
T Consensus       162 ~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~--~~~~~~  238 (481)
T TIGR00879       162 GALTSLYQLAITFGILVAYGFGSGKVSLNNTLGWRIPLGLQLIPAGLLF-LGLFFLPESPRWLVGKGRVEEA--RKSLAR  238 (481)
T ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHHH-HHHhcCCCChHHHHHcCChHHH--HHHHHH
Confidence            9999999999999999999999   666677899999999766555444 3444457654321111111110  000000


Q ss_pred             cccccCCcccccccchhhhhhhccccchhhhhhhhhhhhhhhHHhh---cchhHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 014628          156 SEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLL---QEKVYVVNVLGYIAYNFVIGAYSYWGPKAGY  232 (421)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (421)
                      ......  +..+..+.....+.......    +..+..+.......   +++.++...+..+...........+.|.+.+
T Consensus       239 ~~~~~~--~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  312 (481)
T TIGR00879       239 LRGTSG--EDKELLDELELIDIKRSIEK----RSVQPSWGSLFSSTRRIRRRLFLGVVLQWFQQFTGINAIMYYSPTIFE  312 (481)
T ss_pred             HhCCCC--CcHHHHHHHHHHHHHHHHHH----hhccccHHHHHhcCchhHHHHHHHHHHHHHHHHhCCeehHHHHHHHHH
Confidence            000000  00000000000000000000    00000011222222   2333333344333333334455667777766


Q ss_pred             HhhCCccchh-HHHhhhhHHHHHHhhhhhHHHhhhccccchhhHHHHHHHHHHHHHHHHHH---h-hhh------hHHHH
Q 014628          233 NIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAF---C-LSS------LYGFL  301 (421)
Q Consensus       233 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~------~~~~~  301 (421)
                      + .+.+.... .......++.+++.++.+++.||++||     +.+..+..+..+..+...   . ..+      ....+
T Consensus       313 ~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  386 (481)
T TIGR00879       313 N-AGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRFGRR-----PLLLIGAAGMAICLFVLGILGASFVTGSSKSSGNVAI  386 (481)
T ss_pred             H-cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcch-----HHHHHHHHHHHHHHHHHHHHhhcccCCcccchhHHHH
Confidence            5 45554333 444666788889999999999999988     555544444443333322   1 111      22222


Q ss_pred             HHHHHHHHHHHhc-cCchhhhhhcccCCchhhHHHHHHHHHHHhhcccCcchhHHHhhhccccchhhhHHHHHHHHHHHH
Q 014628          302 ALFTVGELLVFAT-QAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFFLAAG  380 (421)
Q Consensus       302 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~  380 (421)
                      ....+...+.+.. .+....++.|.+|++.|+++.++.+...+. |.+++|.+.+.+.+..+ +...+++.+++.+++.+
T Consensus       387 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~l-g~~i~~~~~~~~~~~~~-~~~~f~~~~~~~~~~~i  464 (481)
T TIGR00879       387 VFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWL-ANFIVGFLFPTMLESIG-VGGVFIFFGGLNVLGLI  464 (481)
T ss_pred             HHHHHHHHHHHccccCeehhhhhccCChHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhcC-ccceehhHHHHHHHHHH
Confidence            3333333333333 344455668888989999999999766665 88899999999998765 66677776666555544


Q ss_pred             HH
Q 014628          381 IW  382 (421)
Q Consensus       381 ~~  382 (421)
                      ..
T Consensus       465 ~~  466 (481)
T TIGR00879       465 FV  466 (481)
T ss_pred             HH
Confidence            43

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>TIGR00883 2A0106 metabolite-proton symporter

Probab=100.00  E-value=3.1e-31  Score=242.18  Aligned_cols=318  Identities=14%  Similarity=0.088  Sum_probs=226.1

Q ss_pred             ccchhhHHHHhhhhcCCchHHHHHHHHHHHHHhhhhhhhhHH--------HHHHHHHHhhhhhhhhccchhhhhhccCCC
Q 014628            4 LLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFW--------SIAICRMLVGVGEASFISLAAPFIDDNAPV   75 (421)
Q Consensus         4 ~~i~~~~~g~l~Dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~--------~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~   75 (421)
                      ..+++++.|+++||+|||+++..+.++..++.++++++++++        .+++.|+++|++.+...+....++.|++|+
T Consensus        48 ~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~  127 (394)
T TIGR00883        48 RPLGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLIGLLPSYATIGIWAPILLLLARLIQGFSLGGEWGGAALYLAEYAPP  127 (394)
T ss_pred             hhhHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhCCChhhhHHHHHHHHHHHHHHHHhhccccccccHHHhhhcCCc
Confidence            357889999999999999999999999999999999999875        478899999999999999999999999999


Q ss_pred             CCchhHHHHHHHHHHHHhhhHHHhHHhhh--------hcchhHHHHHHHHHHHHHHHHHHHhcccccccccCCccccchh
Q 014628           76 PQKTAWLSMFYMCIPTGVALGYVYGGVVG--------SHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQ  147 (421)
Q Consensus        76 ~~r~~~~~~~~~~~~~G~~~g~~~~~~l~--------~~~~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~  147 (421)
                      ++|++..++.+.+..+|.++++.++..+.        +.++||+.|++.+++.++.... ....||+++..+++++.+  
T Consensus       128 ~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~--  204 (394)
T TIGR00883       128 GKRGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDDALLEWGWRIPFLVSAVLVLIGLYL-RRNLEETPVFEKAQEKHK--  204 (394)
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhhccchHHHHHHHHHHHHHHHHH-HHhcCCChhHHHHHhccc--
Confidence            99999999999999999999998876653        3568999999877655443322 222233221100000000  


Q ss_pred             hhhhcccccccccCCcccccccchhhhhhhccccchhhhhhhhhhhhhhhHHhhcchh--HHHHHHHHHHHHHHHHHHHH
Q 014628          148 VVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKV--YVVNVLGYIAYNFVIGAYSY  225 (421)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~  225 (421)
                                                    +.              ..+.++.++++.  ++......++.....+....
T Consensus       205 ------------------------------~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (394)
T TIGR00883       205 ------------------------------KK--------------RGPIRETLTKHRKPFLLGLGLVIATTTTFYLITT  240 (394)
T ss_pred             ------------------------------cc--------------cCCHHHHHHhchHHHHHHHHHHHHHHHHHHHHHH
Confidence                                          00              011223334433  55555555666666777888


Q ss_pred             HhhHHHHHhhCCccchh-HHHhhhhHHHHHHhhhhhHHHhhhccccchhhHHHHHHHHHHH-HHH-HHHHh--hhhhHHH
Q 014628          226 WGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGA-ISC-LTAFC--LSSLYGF  300 (421)
Q Consensus       226 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~--~~~~~~~  300 (421)
                      +.|.|.++..+.++... .......+...++.++.+++.||++||     +.+.....+.. ... .....  .++.+..
T Consensus       241 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  315 (394)
T TIGR00883       241 YLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRIGRR-----PVLIIFTVLAALLAVPLLMALLDSGSFTLF  315 (394)
T ss_pred             HHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchH-----HHHHHHHHHHHHHHHHHHHHHhcCCchHHH
Confidence            99999987777765444 334566778889999999999999988     54443322222 221 11111  2344444


Q ss_pred             HHHHHHHHHHHHhccCchhhhhhcccCCchhhHHHHHHHHHHHhhcccCcchhHHHhhhccccchhhhHHHHH
Q 014628          301 LALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTS  373 (421)
Q Consensus       301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~  373 (421)
                      ....++.+++.+...++......|.+|++.|+++.++.+...+.+|..++|.+.|++.|+.|.+...++....
T Consensus       316 ~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~g~~~~~~~~~~~  388 (394)
T TIGR00883       316 FFLVLGLALIGGMYTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAMTGDWYAIGYYLAA  388 (394)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHHHHcCcchhHHHHHHH
Confidence            5555666677777778889999999999999999998645555558889999999999987755444444433

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=100.00  E-value=1.1e-30  Score=238.45  Aligned_cols=316  Identities=13%  Similarity=0.068  Sum_probs=221.8

Q ss_pred             ccccchhhHHHHhhhhcCCchHHHHHHHHHHHHHhhhhhh--------hhHHHHHHHHHHhhhhhhhhccchhhhhhccC
Q 014628            2 VGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSS--------FDFWSIAICRMLVGVGEASFISLAAPFIDDNA   73 (421)
Q Consensus         2 lg~~i~~~~~g~l~Dr~Grr~~~~~~~~~~~~~~~~~~~~--------~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~   73 (421)
                      +++++++++.|+++||+|||+++..+.++++++.+.+.++        .+++.+++.|+++|++.+...+....++.|++
T Consensus        62 ~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~  141 (399)
T PRK05122         62 LATLLSRPHAGRYADTLGPKKAVVFGLCGCALSGLLYLLAGLLAAWPVLSLLLLLLGRLLLGIGESLAGTGSILWGIGRV  141 (399)
T ss_pred             HHHHHhchhhHhHHhccCCcchHHHHHHHHHHHHHHHHHhhhhhccchhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhc
Confidence            4678899999999999999999999999988877766543        25778999999999999999999999999999


Q ss_pred             CCCCchhHHHHHHHHHHHHhhhHHHhHHhhhhcchhHHHHHHHHHHHHHHHHHHHhcccccccccCCccccchhhhhhcc
Q 014628           74 PVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVS  153 (421)
Q Consensus        74 ~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~  153 (421)
                      |+++|++++++.+.+..+|.++|+.+++.+.+.+|||+.+++.++..++..+.. ...|+.+     +++.+ .      
T Consensus       142 ~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~-----~~~~~-~------  208 (399)
T PRK05122        142 GALHTGRVISWNGIATYGALAIGAPLGVLLYHWGGLAGLGLLIMLLALLGLLLA-RPRPAVP-----PVKGE-R------  208 (399)
T ss_pred             ChhhhccchhhhhhhhhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHH-hcCCCCC-----CCCcc-c------
Confidence            999999999999999999999999999999999999999888766543322221 1111110     00000 0      


Q ss_pred             cccccccCCcccccccchhhhhhhccccchhhhhhhhhhhhhhhHHhhcchhHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 014628          154 EGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYN  233 (421)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (421)
                                                               .+.++.++  ..+.......+....+.....+.|.|+.+
T Consensus       209 -----------------------------------------~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (399)
T PRK05122        209 -----------------------------------------LPFRRVLG--RVWPYGMGLALASIGFGTIATFITLYYAA  245 (399)
T ss_pred             -----------------------------------------hhHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                                                     00111111  11111122233344455566778887766


Q ss_pred             hhCCccchhHHHhhhhHHHHHHhhhhhHHHhhhccccchhhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHh
Q 014628          234 IYHMSNADMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVFA  313 (421)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  313 (421)
                      . +.+.. ........++.+++.++.+++.||+++|     +.+.....+...........++.+...+...+.+++.+.
T Consensus       246 ~-~~~~~-~~~~~~~~~~~~~~~~~~g~l~~r~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~  318 (399)
T PRK05122        246 R-GWDGA-ALALTLFGVAFVGARLLFGNLINRLGGL-----RVAIVSLLVEILGLLLLWLAPSPWMALIGAALTGFGFSL  318 (399)
T ss_pred             c-ccccc-hHHHHHHHHHHHHHHHHHHHHHHHhccH-----HHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhHHH
Confidence            4 33322 2223456677788999999999999987     655555555555444444455555555566667777776


Q ss_pred             ccCchhhhhhcccCCchhhHHHHHHHHHHHhhcccCcchhHHHhhhccccchhhhHHHHHHHHHHHHHH
Q 014628          314 TQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFFLAAGIW  382 (421)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~  382 (421)
                      ..+.......+..|+++|+++.|+.+...+. |..++|.+.|.+.|..| ++..+...+.+.+++.+..
T Consensus       319 ~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~-g~~~~~~~~g~l~~~~g-~~~~~~~~~~~~~~~~~~~  385 (399)
T PRK05122        319 VFPALGVEAVKRVPPQNRGAALGAYSVFLDL-SLGITGPLAGLVASWFG-YPSIFLAAALAALLGLALT  385 (399)
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHcC-HHHHHHHHHHHHHHHHHHH
Confidence            6666667777889999999999999766666 77788889999999876 7777777666655544433

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=100.00  E-value=2.4e-30  Score=235.91  Aligned_cols=319  Identities=10%  Similarity=0.034  Sum_probs=220.6

Q ss_pred             ccccchhhHHHHhhhhcCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhhhhhhhccchhhhhhccCCCCCchhH
Q 014628            2 VGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAW   81 (421)
Q Consensus         2 lg~~i~~~~~g~l~Dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~   81 (421)
                      ++++++++++|+++||+|||++++.+.++++++++++++++|++.++++|+++|++.+...+....++.|++|+++|+++
T Consensus        62 ~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~  141 (413)
T PRK15403         62 AGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAATLFTTSMTQFLIARFIQGTSICFIATVGYVTVQEAFGQTKGIKL  141 (413)
T ss_pred             HHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence            57788999999999999999999999999999999999999999999999999999987777778889999999999999


Q ss_pred             HHHHHHHHHHHhhhHHHhHHhhhhcchhHHHHHHHHHHHHHHHHHHHhcccccccccCCccccchhhhhhcccccccccC
Q 014628           82 LSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNL  161 (421)
Q Consensus        82 ~~~~~~~~~~G~~~g~~~~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (421)
                      +++......+|..+||.+++.+.++.|||+.|++.+++.++..+..++..||+++.   ++++. .              
T Consensus       142 ~~~~~~~~~~~~~~g~~lg~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~lp~~~~~---~~~~~-~--------------  203 (413)
T PRK15403        142 MAIITSIVLVAPIIGPLSGAALMHFVHWKVLFAIIAVMGLIAFVGLLLAMPETVKR---GAVPF-S--------------  203 (413)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCCccc---cCCCC-C--------------
Confidence            99999999999999999999999888999999999988777766555555664321   00000 0              


Q ss_pred             CcccccccchhhhhhhccccchhhhhhhhhhhhhhhHHhhcchhHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhCCccch
Q 014628          162 NDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNAD  241 (421)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (421)
                                                  .++..++++.++++|.++...+...+.....+.+..+.|.++++.++.++..
T Consensus       204 ----------------------------~~~~~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~  255 (413)
T PRK15403        204 ----------------------------AKSVLRDFRNVFRNRLFLTGAATLSLSYIPMMSWVAVSPVILIDAGGMTTSQ  255 (413)
T ss_pred             ----------------------------hHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHhChHHHHHhcCCCHHH
Confidence                                        0011245677889999998888777777777788888999999988888665


Q ss_pred             hHHH-hhhhHHHHHHhhhhhHHHhhhccccchhhHHHHH--HHHHHHHHHHHH--HhhhhhHHHHHHHHHHHHHHHhccC
Q 014628          242 MMFG-GVTIVCGIVGTISGGFILDQMGATISNAFKLLSA--ATFLGAISCLTA--FCLSSLYGFLALFTVGELLVFATQA  316 (421)
Q Consensus       242 ~~~~-~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~--~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~  316 (421)
                      ..+. .....+.+++..+.+++.++..+++    .....  ....+.......  ...++.+..++..++.+.+.+...+
T Consensus       256 ~gl~~~~~~~~~~i~~~l~~~~~~~~~~~~----~~~~~~~~~~ig~~l~~~~~~~~~~~~~~~~~~~~l~~~G~~~~~p  331 (413)
T PRK15403        256 FAWTQVPVFGAVIVANAIVARFVKDPTEPR----FIWRAVPIQLVGLALLIVGNLLWPHVWLWSVLGTSLYAFGIGLIFP  331 (413)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccCCchh----HHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHhH
Confidence            5433 3344555666666666554433321    11111  111111111111  1122332234455556666666655


Q ss_pred             chhhhhhcccCCchhhHHHHHHHHHHHhhcccCcchhHHHhhhccccchhhhHHHHHH
Q 014628          317 PVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSI  374 (421)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~  374 (421)
                      ........ -....+|++.++.+..... +...++...+++.+. + -..++.....+
T Consensus       332 ~~~~~al~-~~~~~~G~a~a~~~~~~~~-~~~~~~~~~g~~~~~-~-~~~~~~~~~~~  385 (413)
T PRK15403        332 TLFRFTLF-SNNLPKGTVSASLNMVILM-VMAVSVEIGRWLWFN-G-GRLPFHLLAVV  385 (413)
T ss_pred             HHHHHHhc-cCCCCCcHHHHHHHHHHHH-HHHHHHHHHHHHHHc-C-CchHHHHHHHH
Confidence            55533321 1223478888888666555 556677788888776 2 22444444433

>TIGR00899 2A0120 sugar efflux transporter

Probab=100.00  E-value=1.8e-30  Score=235.49  Aligned_cols=322  Identities=11%  Similarity=0.054  Sum_probs=226.4

Q ss_pred             cccchhhHHHHhhhhcCCchHHH-HHHHHHHHHHhhhhhhhhHHHHHHHHHHhhhhhhhhccchhhhhhccCCCCCchhH
Q 014628            3 GLLVASPIFASLAKSHNPFRLIG-VGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAW   81 (421)
Q Consensus         3 g~~i~~~~~g~l~Dr~Grr~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~   81 (421)
                      +..+.+++.|+++||+||||.++ .+..+..++.++++++++++.+++.|+++|.+.+...|...+++.|+.|+++|++.
T Consensus        45 ~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~  124 (375)
T TIGR00899        45 VGIAVSQLLATRSDYQGDRKGLILFCCLLAALACLLFAWNRNYFLLLVLGVLLSSFASTANPQLFALAREHADRTGREAV  124 (375)
T ss_pred             HHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcchhhH
Confidence            35677899999999999988755 45666677788889999999999999999988888888888899999887777654


Q ss_pred             --HHHHHHHHHHHhhhHHHhHHhhhhcchhHHHHHHHHHHHHHHHHHHHhcccccccccCCccccchhhhhhcccccccc
Q 014628           82 --LSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEAS  159 (421)
Q Consensus        82 --~~~~~~~~~~G~~~g~~~~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (421)
                        .+....+.++|.++||.+++.+.+..+||+.|++.+++.++..++.++..||.+++.+  ++.+ .            
T Consensus       125 ~~~~~~~~~~~~g~~ig~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~------------  189 (375)
T TIGR00899       125 MFSSVMRAQISLAWVIGPPLAFWLALGFGFTVMFLTAALAFVLCGVLVWLFLPSYPRGAP--GALT-R------------  189 (375)
T ss_pred             HHHHHHHHHHhHHHHHhhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhCCCcccCcc--cccC-c------------
Confidence              6788888999999999999999998999999999998877777776666676432110  0000 0            


Q ss_pred             cCCcccccccchhhhhhhccccchhhhhhhhhhhhhhhHHhhcchhHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhCCcc
Q 014628          160 NLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSN  239 (421)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (421)
                                                         .+.+..++++.++......++..........+.|.++++..+.++
T Consensus       190 -----------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  234 (375)
T TIGR00899       190 -----------------------------------LEVRGLLASRDTRLLFVACTLMWGCNILYIINMPLLIIHELGLPD  234 (375)
T ss_pred             -----------------------------------chhhhhhcCcchHHHHHHHHHHHHHHHHHHhhhHHHHHHHcCCCH
Confidence                                               011223455555554444444444445556678888888777775


Q ss_pred             chhH-HHhhhhHHHHHHhhhhhHHHhhhccccchhhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhccCch
Q 014628          240 ADMM-FGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPV  318 (421)
Q Consensus       240 ~~~~-~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (421)
                      .... .........+++.++.+++.||+++|     +.+.................++.+.......+.+++.+...+..
T Consensus       235 ~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~  309 (375)
T TIGR00899       235 KLAGLMMGTAAGLEIPFMLLAGYLIKRFGKR-----RLMLLAALAGVAFYTGLAADNSLWALLMLQLLNAIFIGILAGIG  309 (375)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHhcch-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5443 22344455677788999999999988     55554444444333333334455555555555666666666666


Q ss_pred             hhhhhcccCCchhhHHHHHHHHHHHhhcccCcchhHHHhhhccccchhhhHHHHHHHHHHHHHH
Q 014628          319 NYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFFLAAGIW  382 (421)
Q Consensus       319 ~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~  382 (421)
                      ..+..+..| +++++++++.+...+. |..++|.+.|.+.|..| ++..+...+.+.+++.+..
T Consensus       310 ~~~~~~~~~-~~~~~~~~~~~~~~~~-g~~~g~~~~g~~~~~~g-~~~~~~~~~~~~~~~~~~~  370 (375)
T TIGR00899       310 MLYFQDLMP-GRAGAATTLYTNTGRV-GWIIAGSVGGILAERWS-YHAVYWFAIVMLIVALFCL  370 (375)
T ss_pred             HHHHHHhCc-chhhHHHHHHHHHHHH-HHHHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHHHH
Confidence            667777665 4567999999766665 98999999999999866 7677777666655555443

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=100.00  E-value=1.5e-30  Score=238.61  Aligned_cols=325  Identities=14%  Similarity=0.129  Sum_probs=235.4

Q ss_pred             ccccchhhHHHHhhhhcCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhhhhhhhccchhhhhhccCCCCCchhH
Q 014628            2 VGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAW   81 (421)
Q Consensus         2 lg~~i~~~~~g~l~Dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~   81 (421)
                      ++..++++++|+++||+|||+++..+.++..++.+++.++++++.+++.|++.|++.+ ..+....++.|++|+++|+++
T Consensus        65 ~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~  143 (408)
T PRK09874         65 LFSAIASPFWGGLADRKGRKIMLLRSALGMGIVMVLMGLAQNIWQFLILRALLGLLGG-FVPNANALIATQVPRNKSGWA  143 (408)
T ss_pred             HHHHHHHHHHHHHhhhhCcHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhh-hHHhHHHHHHHhcCHhhhhHH
Confidence            3567889999999999999999999999999999999999999999999999999865 567778889999999999999


Q ss_pred             HHHHHHHHHHHhhhHHHhHHhhhhcchhHHHHHHHHHHHHHHHHHHHhcccccccccCCccccchhhhhhcccccccccC
Q 014628           82 LSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNL  161 (421)
Q Consensus        82 ~~~~~~~~~~G~~~g~~~~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (421)
                      +++...+..+|..++|.+++.+.+..+||+.|++.+++.++..+..++..||..+..   ++++..              
T Consensus       144 ~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~--------------  206 (408)
T PRK09874        144 LGTLSTGGVSGALLGPLAGGLLADSYGLRPVFFITASVLFLCFLVTLFCIRENFQPV---SKKEML--------------  206 (408)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhccCcccc---cchhhh--------------
Confidence            999999999999999999999999899999999999887776666665555432110   000000              


Q ss_pred             CcccccccchhhhhhhccccchhhhhhhhhhhhhhhHHhhcchhHHHH-HHHHHHHHHHHHHHHHHhhHHHHHhhCCccc
Q 014628          162 NDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVN-VLGYIAYNFVIGAYSYWGPKAGYNIYHMSNA  240 (421)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (421)
                                                 +    .++..+.++++.++.. ................+.|.|..+..+....
T Consensus       207 ---------------------------~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (408)
T PRK09874        207 ---------------------------H----MREVVTSLKNPKLVLSLFVTTLIIQVATGSIAPILTLYVRELAGNVSN  255 (408)
T ss_pred             ---------------------------H----HHHHHHhCcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchH
Confidence                                       0    0011223455554432 2223333444445566777787775543321


Q ss_pred             h----hHHHhhhhHHHHHHhhhhhHHHhhhccccchhhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhccC
Q 014628          241 D----MMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQA  316 (421)
Q Consensus       241 ~----~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (421)
                      .    ..+..+..++.+++.+..+++.||+++|     +.+...........+.....++.+...+...+.+++.+...+
T Consensus       256 ~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~g~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  330 (408)
T PRK09874        256 IAFISGMIASVPGVAALLSAPRLGKLGDRIGPE-----KILITALIFSVLLLIPMSFVQTPLQLGILRFLLGAADGALLP  330 (408)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-----hhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhHhhHH
Confidence            1    1222445567778888899999999988     555555555444444444444555555566667777777777


Q ss_pred             chhhhhhcccCCchhhHHHHHHHHHHHhhcccCcchhHHHhhhccccchhhhHHHHHHHHHHHHHH
Q 014628          317 PVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFFLAAGIW  382 (421)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~  382 (421)
                      .......+..|++++++..++.+..... |..++|.+.|.+.+..| |...|...+++.+++.+..
T Consensus       331 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~-g~~~gp~~~G~l~~~~g-~~~~f~~~~~~~l~~~~~~  394 (408)
T PRK09874        331 AVQTLLVYNSSNQIAGRIFSYNQSFRDI-GNVTGPLMGAAISANYG-FRAVFLVTAGVVLFNAVYS  394 (408)
T ss_pred             HHHHHHHHhCCcccceeeehHHHHHHHH-HHHhhHHHHHHHHhhcc-hhHHHHHHHHHHHHHHHHH
Confidence            7777888888889999999998666565 99999999999999866 7778887776666555444

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=100.00  E-value=1.3e-31  Score=242.38  Aligned_cols=323  Identities=16%  Similarity=0.160  Sum_probs=227.3

Q ss_pred             ccccchhhHHHHhhhhcCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhhhhhhhccchhhhhhccCCCCCchhH
Q 014628            2 VGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAW   81 (421)
Q Consensus         2 lg~~i~~~~~g~l~Dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~   81 (421)
                      +||+++.+++|.+.||++..+.+....+++++..++....+|++.+++.|++.|+.++..+|....+++.|+.++||+..
T Consensus        92 v~Yii~~~p~~~L~~r~~ls~~l~~~~~~w~~~~~~~~~~~s~~~~ialr~llGl~es~~wP~~~~~lg~wy~~~e~g~r  171 (495)
T KOG2533|consen   92 VGYIIGQFPSGLLGDRFPLSKGLSVSGILWGLFGFLTAAVHSFPGLIALRFLLGLFESGGWPGVVAILGNWYGKSERGLR  171 (495)
T ss_pred             HHHHHHHhhHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcccchHHHHHHHhhcChhhhhhh
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhhHHHhHHhhh------hcchhHHHHHHHHHHHHHHHHHHHhcccccccccCCccccchhhhhhcccc
Q 014628           82 LSMFYMCIPTGVALGYVYGGVVG------SHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEG  155 (421)
Q Consensus        82 ~~~~~~~~~~G~~~g~~~~~~l~------~~~~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~  155 (421)
                      ++++.+..++|.++|++++..+.      ...||||.|++.++++++.+++.++++|+.+.+..-.++.+..        
T Consensus       172 ~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW~~~FiI~G~i~~~~gi~~f~~lp~~P~~~~fl~~~ek~--------  243 (495)
T KOG2533|consen  172 MGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGWRWLFIIEGVITLVLGIVVFFFLPDNPSKAWFLTDEEKE--------  243 (495)
T ss_pred             HHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCceeehhHHHHHHHHHHheEEEEecCChhhccccchHHHH--------
Confidence            99999999999999999998863      4568999999999999999999999998865432111110000        


Q ss_pred             cccccCCcccccccchhhhhhhccccchhhhhhhhhhhhhhhHHhhcchhHHHHHHHHHHHHHHHHHHHHHhhHHHHHhh
Q 014628          156 SEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIY  235 (421)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (421)
                                  ...++.++++.+...+       +..+..+++.+++|.+|...+..++.....+++.+|+|.++.+..
T Consensus       244 ------------~~~~~~~~~~~~~~~~-------~~~~~~~~~a~~dp~vw~~~l~~~~~~lv~~~~~~~lpl~l~~~~  304 (495)
T KOG2533|consen  244 ------------LVVERLRESPSGGIEN-------KFKWKGFKEALKDPGVWPFSLCYFFLKLVNYGFSYWLPLYLKSNG  304 (495)
T ss_pred             ------------HHHHHHHhccCCCccc-------ccCHHHHHHHHhchhHHHHHHHHHHHhhccccHHHHHHHHHHcCC
Confidence                        0000000000000000       011356778889999999999999999999999999999999955


Q ss_pred             CCccchh-HHHhhhhHHHHHHhhhhhHHHhhhccccchhhHHH-HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHh
Q 014628          236 HMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLL-SAATFLGAISCLTAFCLSSLYGFLALFTVGELLVFA  313 (421)
Q Consensus       236 ~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  313 (421)
                      +++..+. .+.....++++++.+++|+++||++.-...+ ... ....+....+...+..................+...
T Consensus       305 ~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~~~~~~~~-~~~~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~  383 (495)
T KOG2533|consen  305 GYSELQANLLSTPYDVGGIVGLILAGYLSDRLKTIFARR-LLFIVFLCLYAIIGAISLLAAAVLPGAYGAFLIGPYGLIA  383 (495)
T ss_pred             CcChHHhccccchHHhhhHHHHHHHHHHHHHHhhhHHHH-HHHHHHHHHHHHHHHHHHHhhccchHHhHHHHhcchhhHH
Confidence            5765444 5667788999999999999999964111111 222 223333333333333333333333333333344444


Q ss_pred             ccCchhhhhhcccCCchhh-HHHHHHHHHHHhhcccCcchh
Q 014628          314 TQAPVNYVCLHSVKPSLRA-LSMAISTVSIHIFGDVPSSPL  353 (421)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~g~~~~~~~  353 (421)
                      ..+.......+...++.|. +..+......+. +++++|.+
T Consensus       384 ~~~~~~~w~s~~~~g~~k~~~~~~~~i~~~~s-~~~~~~~~  423 (495)
T KOG2533|consen  384 TAIIALSWTSANLAGNTKALTTVSAIIDGTGS-AGAISGQL  423 (495)
T ss_pred             HHHHHHhhccccccchHHhHHHHhhhhcchhH-HHHhhhhh
Confidence            5555566666666554433 333343333344 44444433

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=100.00  E-value=1.9e-31  Score=239.80  Aligned_cols=305  Identities=19%  Similarity=0.288  Sum_probs=225.2

Q ss_pred             ccccchhhHHHHhhhhcCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhhhhhhhccchhhhhhccCCCCCchhH
Q 014628            2 VGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAW   81 (421)
Q Consensus         2 lg~~i~~~~~g~l~Dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~   81 (421)
                      ++..+++++.|+++||+|||+++..+.++.+++.++..+++|++.+++.|++.|++.+...+...+++.|++|+++|+++
T Consensus        43 ~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~  122 (352)
T PF07690_consen   43 LGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLLAFASNFWLLLIARFLLGIGSGFFSPASNALIADWFPPEERGRA  122 (352)
T ss_dssp             HHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHhhhhhhHHHHhhhccccccccccccccccccccccchhhhhhhc
Confidence            45678999999999999999999999999999977777778888999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhhHHHhHHhhhhcchhHHHHHHHHHHHHHHHHHHHhcccccccccCCccccchhhhhhcccccccccC
Q 014628           82 LSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNL  161 (421)
Q Consensus        82 ~~~~~~~~~~G~~~g~~~~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (421)
                      +++.+.+.++|.+++|.+++.+.+..+||+.|++.+++.++..++..++.+++++..+.+++.+..              
T Consensus       123 ~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~--------------  188 (352)
T PF07690_consen  123 FGILSAGFSLGSILGPLLGGFLISYFGWRWAFLISAILSLIAAILFILFLPEPPPPRERESPKESE--------------  188 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCCCHCHHCCHHHHHHHHHHHHHHHHHCCC---STTTT--SSTTTT--------------
T ss_pred             cccccchhhhhhhcccchhhhhhhccccccccccccchhhhhhhhHhhhhhhcccccccccccccc--------------
Confidence            999999999999999999999999999999999999998888776555555433221111111000              


Q ss_pred             CcccccccchhhhhhhccccchhhhhhhhhhhhhhhHHhhcchhHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhCCc-cc
Q 014628          162 NDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMS-NA  240 (421)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  240 (421)
                                   .            +..++..+.++.++++|.+|......+...........+.|.|+.+.++.+ ..
T Consensus       189 -------------~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  243 (352)
T PF07690_consen  189 -------------S------------KKPKPLKPGFKSLFKNPVLWILLIAFFLFFFVFSGFSFFLPLYLQEVLGFSGPS  243 (352)
T ss_dssp             ---------------------------HHHCCCH-CTHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCTHH
T ss_pred             -------------c------------ccccccccccccccccchhhhhhhhhhHHHHHHHHhhcccchhhhhccCCCHHH
Confidence                         0            000000112556667777765555556666677778899999988888888 44


Q ss_pred             hh-HHHhhhhHHHHHHhhhhhHHHhhhccccchhhHHHHHHHHHHHHHHHHH---HhhhhhHHHHHHHHHHHHHHHhccC
Q 014628          241 DM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTA---FCLSSLYGFLALFTVGELLVFATQA  316 (421)
Q Consensus       241 ~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~  316 (421)
                      .. .+..+..+..+++.++.+++.||++++     +................   ...++.........+.+++.+...+
T Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  318 (352)
T PF07690_consen  244 QAGLLFSIFGIVGIIGSLLAGRLSDRFGRR-----RRLLIAILLLILGALGLLLLPFSSSPVWLIIALFLIGFGFGIVFP  318 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHTTCH-----HHHHHHHHHHHHHHHHHCCSHHHCHHHHHHHHHHHHHHHHHHHCH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHcCcH-----HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence            44 345667778888899999999999886     33333333222222222   2222344555566677778888888


Q ss_pred             chhhhhhcccCCchhhHHHHHHHHHHHhhcccCcc
Q 014628          317 PVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSS  351 (421)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~  351 (421)
                      .......+.+|+++++++.|+.+...+. |..++|
T Consensus       319 ~~~~~~~~~~~~~~~g~~~g~~~~~~~~-~~~igP  352 (352)
T PF07690_consen  319 ILFSLIQELVPPEYRGTAFGLFNSIGSL-GGIIGP  352 (352)
T ss_dssp             HHHHHHHCCCHTCHHHHHHHHHHHHHHH-HHHHHH
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHHHHH-HHHHCC
Confidence            9999999999999999999999766665 766655

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=100.00  E-value=2.3e-30  Score=234.60  Aligned_cols=331  Identities=14%  Similarity=0.083  Sum_probs=228.5

Q ss_pred             ccccchhhHHHHhhhhcCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhhhhhhhccchhhhhhccCCCCCchhH
Q 014628            2 VGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAW   81 (421)
Q Consensus         2 lg~~i~~~~~g~l~Dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~   81 (421)
                      +++.+.++++|+++||+|||++++++.++.+++++.++++.+.   ++.|+++|++.+...|...+++.|++|+++|+++
T Consensus        49 l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~~~~~~~~---~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~~~~a  125 (393)
T PRK11195         49 LAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCLLMLFGIHP---LLAYGLVGIGAAAYSPAKYGILTELLPGEKLVKA  125 (393)
T ss_pred             HHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHH
Confidence            5678899999999999999999999999999999888777664   7799999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhhHHHhHHhhhhcchhHHHHHHHHHHHHHHHHHHHhcccccccccCCccccchhhhhhcccccccccC
Q 014628           82 LSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNL  161 (421)
Q Consensus        82 ~~~~~~~~~~G~~~g~~~~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (421)
                      +++.+....+|.++||.+++.+.+. .|+..+.+.+...++. .+..+..||.+.+.++.+ .+..              
T Consensus       126 ~~~~~~~~~~~~~~Gp~lgG~l~~~-~~~~~~~i~~~~~~~~-~~~~~~l~~~~~~~~~~~-~~~~--------------  188 (393)
T PRK11195        126 NGWMEGSTIAAILLGTVLGGALADP-HAEAALAVCALIYLLA-ALFNLFIPRLGARRPGQS-WNPI--------------  188 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH-HHHHhcCCCCcccccccC-CCHH--------------
Confidence            9999999999999999999999885 4888887776554333 333444565322110000 0000              


Q ss_pred             CcccccccchhhhhhhccccchhhhhhhhhhhhhhhHHhhcchhHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhCCccch
Q 014628          162 NDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNAD  241 (421)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (421)
                                                ...++..+..+.++++|.+........+.........+..|.++++.++.++..
T Consensus       189 --------------------------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~s~~~  242 (393)
T PRK11195        189 --------------------------ALLRDFFHACRVLWRDKLGRFSLAGTTLFWGAGATLRFLVLAWAPVALGITLNQ  242 (393)
T ss_pred             --------------------------HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhH
Confidence                                      001111233456677777665554444444445555666777888878887655


Q ss_pred             hHH-HhhhhHHHHHHhhhhhHHHhhhccccchhhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhccCchhh
Q 014628          242 MMF-GGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNY  320 (421)
Q Consensus       242 ~~~-~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (421)
                      ..+ .....++.+++.+..+++.||.+++     +.+..+.... .........++.+.......+.+++.+...++..+
T Consensus       243 ~G~~~~~~~~g~i~g~~~~~~l~~~~~~~-----~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~G~~~g~~~~~~~~  316 (393)
T PRK11195        243 PAYLQAVVAIGIAVGAGAAARLVTLETVL-----RVLPAGILMG-LVVLLMALQHSLLPAYPLLILIGALGGFFVVPMNA  316 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCccc-----chHHHHHHHH-HHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhHHH
Confidence            533 3566678888888888888887765     4444443332 22222233444554555555677777777777888


Q ss_pred             hhhcccCCch-hhHHHHHHHHHHHhhcccCcchhHHHhhhccccchhhhHHHHHHHHHHHHHHHHhhh
Q 014628          321 VCLHSVKPSL-RALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFFLAAGIWFVGIF  387 (421)
Q Consensus       321 ~~~~~~~~~~-~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  387 (421)
                      ..++..|++. +|++.++.+...+. +..++..+.+.+ +..| .+..+.+.....+......+.+++
T Consensus       317 ~~q~~~~~~~~~g~~~a~~~~~~~~-~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  381 (393)
T PRK11195        317 LLQHRGHVLVGAGHSIAVQNFNENL-AMLLMLGLYSLL-VKLG-VPVVAVIVGFGLLVALAMALLWRW  381 (393)
T ss_pred             HHHhhCcccccchhHHHHHhHHHHH-HHHHHHHHHHHH-HHcC-CCHHHHHHHHHHHHHHHHHHHHHH
Confidence            8877655544 79999999866666 878888787755 4444 556666666655555555555543

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=100.00  E-value=5.9e-30  Score=229.55  Aligned_cols=321  Identities=13%  Similarity=0.031  Sum_probs=237.2

Q ss_pred             ccccchhhHHHHhhhhcCCchHHHHHHHHHHHHHhhhhhh-----hhHHHHHHHHHHhhhhhhhhccchhhhhhccCCCC
Q 014628            2 VGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSS-----FDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVP   76 (421)
Q Consensus         2 lg~~i~~~~~g~l~Dr~Grr~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~   76 (421)
                      +++.++.++.|++.||+|.|+++.++.+++++.++..+++     ++++.+++.|++.|++ +..++.....+++|+|++
T Consensus        81 l~~al~rip~G~l~Dr~G~R~v~~~~~ll~~i~~~~~~~a~~~~~~s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~  159 (462)
T PRK15034         81 VSGALLRVPYSFMVPIFGGRRWTVFSTAILIIPCVWLGIAVQNPNTPFGIFIVIALLCGFA-GANFASSMGNISFFFPKA  159 (462)
T ss_pred             HHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHh
Confidence            4567788999999999999999999999999999999987     8999999999999998 668889999999999999


Q ss_pred             CchhHHHHHHHHHHHHhhhHHHhHHhhh-----h-------------cchhHHHHHHHHHHHHHHHHHHHhccccccccc
Q 014628           77 QKTAWLSMFYMCIPTGVALGYVYGGVVG-----S-------------HLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGF  138 (421)
Q Consensus        77 ~r~~~~~~~~~~~~~G~~~g~~~~~~l~-----~-------------~~~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~  138 (421)
                      +||+++|+.....++|..+++++...+.     +             ..+||.+.++..++.++..++.+++.++.+.  
T Consensus       160 ~rG~A~Gi~~g~G~~G~~l~~~l~p~~i~~~l~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~~~~~~~~--  237 (462)
T PRK15034        160 KQGSALGINGGLGNLGVSVMQLVAPLVIFVPVFAFLGVNGVPQADGSVMSLANAAWIWVPLLAIATIAAWSGMNDIAS--  237 (462)
T ss_pred             HhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhCCCccc--
Confidence            9999999998777777776666554432     1             3458888888888877777777766433110  


Q ss_pred             CCccccchhhhhhcccccccccCCcccccccchhhhhhhccccchhhhhhhhhhhhhhhHHhhcchhHHHHHHHHHHHHH
Q 014628          139 APAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNF  218 (421)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  218 (421)
                          ++. .                                              .++....+|+|..|.+.+.+++.+.
T Consensus       238 ----~~~-~----------------------------------------------~~~~~~vlk~~~~Wllslly~~tFG  266 (462)
T PRK15034        238 ----SRA-S----------------------------------------------IADQLPVLQRLHLWLLSLLYLATFG  266 (462)
T ss_pred             ----ccc-C----------------------------------------------HHHHHHHhCCCchhHHHHHHHHHHH
Confidence                000 0                                              1345568899999999999988888


Q ss_pred             HHHHHHHHhhHHHHHhhCCccchhHHHhhhhHHHHHHhhhhhHHHhhhccccchhhHHHHHHHHHHHHHHHH-HHhh---
Q 014628          219 VIGAYSYWGPKAGYNIYHMSNADMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLT-AFCL---  294 (421)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---  294 (421)
                      .+.++..++|.|.++.+.... ......+..+...+.++++|+++||+|++     +.+..+.....+.... ....   
T Consensus       267 ~fvg~s~~lp~~~~~~~~~~~-~l~~~~l~~l~~~l~rplgG~LADRiG~~-----~vl~~~~i~~~i~~~~~~l~lp~~  340 (462)
T PRK15034        267 SFIGFSAGFAMLAKTQFPDVN-ILRLAFFGPFIGAIARSVGGAISDKFGGV-----RVTLINFIFMAIFSALLFLTLPGT  340 (462)
T ss_pred             HHHHHHHHHHHHHHHHcChHH-HHHHHHHHHHHHHHHHHhhHHHHHhcCch-----HHHHHHHHHHHHHHHHHHHHhccc
Confidence            898999999999988663221 11223344577788899999999999998     6555554433333221 1111   


Q ss_pred             --hhhHHHHHHHHHHHHHHHhccCchhhhhhcccCC---------------------chhhHHHHHHHHHHHhhcccCcc
Q 014628          295 --SSLYGFLALFTVGELLVFATQAPVNYVCLHSVKP---------------------SLRALSMAISTVSIHIFGDVPSS  351 (421)
Q Consensus       295 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~g~~~~~~~~~g~~~~~  351 (421)
                        .+.+...+.+....++.+..+...+-.+.+.+|+                     ++.|.+.|+.. ..+.+|+.+-|
T Consensus       341 ~~~~~~~~~~~~~~l~~~~G~gngsvfk~ip~~f~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~G~v~-a~G~~Ggf~~p  419 (462)
T PRK15034        341 GSGNFIAFYAVFMGLFLTAGLGSGSTFQMIAVIFRQITIYRVKMKGGSDEQAQREAVTETAAALGFIS-AIGAVGGFFIP  419 (462)
T ss_pred             cccHHHHHHHHHHHHHHHhcccchHHHHhhHHHHhhhhhhcccccccchhHHhhHHHHHHHHHHHHHH-HHHHcccchhh
Confidence              2344445555555566667777777777777763                     15678888885 44445888889


Q ss_pred             hhHHHhhhccccchhhhHHHHHHHHHHHHHHH
Q 014628          352 PLVGVLQDHVNNWRKTTLALTSIFFLAAGIWF  383 (421)
Q Consensus       352 ~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~  383 (421)
                      .+.|...+..|++...++.+.+..+++.++..
T Consensus       420 ~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~w  451 (462)
T PRK15034        420 QAFGMSLNMTGSPVGAMKVFLIFYIVCVLLTW  451 (462)
T ss_pred             HHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHH
Confidence            99999999999998888888777666665443

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=100.00  E-value=2.5e-30  Score=235.45  Aligned_cols=304  Identities=16%  Similarity=0.172  Sum_probs=227.5

Q ss_pred             ccccchhhHHHHhhhhcCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhhhhhhhccchhhhhhccCCCCCchhH
Q 014628            2 VGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAW   81 (421)
Q Consensus         2 lg~~i~~~~~g~l~Dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~   81 (421)
                      ++..++++++|+++||+|||+++..+.++..++.+++.++++++.+++.|++.|++.+...+...+++.|++|+++|+++
T Consensus        51 ~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (385)
T TIGR00710        51 LGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLALSNNIETLLVLRFVQAFGASAGSVISQALVRDIYPGEELSRI  130 (385)
T ss_pred             HHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHH
Confidence            46778999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhhHHHhHHhhhhcchhHHHHHHHHHHHHHHHHHHHhcccccccccCCccccchhhhhhcccccccccC
Q 014628           82 LSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNL  161 (421)
Q Consensus        82 ~~~~~~~~~~G~~~g~~~~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (421)
                      +++.+....+|..++|.+++.+.++.+||+.|++.++..++..+..++..||.++..    +++..              
T Consensus       131 ~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~--------------  192 (385)
T TIGR00710       131 YSILMPVLALAPAVAPLLGGYILVWLSWHAIFAFLSLAGILLSALIFFILPETLPYE----ARIQI--------------  192 (385)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhCCCCCCCc----ccCCH--------------
Confidence            999999999999999999999999899999999998887777666666555532110    00000              


Q ss_pred             CcccccccchhhhhhhccccchhhhhhhhhhhhhhhHHhhcchhHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhCCccch
Q 014628          162 NDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNAD  241 (421)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (421)
                                                   ++..+.+++.+++|.++...+..............+.|.++++..+.++..
T Consensus       193 -----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  243 (385)
T TIGR00710       193 -----------------------------STYFETFLLLLKSKMFWGYALIYGASFGGFFAFFSGAPFVYIDIMGVSPSV  243 (385)
T ss_pred             -----------------------------HHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHcChHHHHHHcCCCHHH
Confidence                                         001134556678888887777666666667777888899988888877655


Q ss_pred             h-HHHhhhhHHHHHHhhhhhHHHhhhccccchhhHHHHHHHHHHHHHHHHHHhh-----hhhHHHHHHHHHHHHHHHhcc
Q 014628          242 M-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCL-----SSLYGFLALFTVGELLVFATQ  315 (421)
Q Consensus       242 ~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~  315 (421)
                      . .+.....++.+++.++.+++.||+++|     +.+.................     ...........+.+++.+...
T Consensus       244 ~g~~~~~~~~~~~~~~~~~g~l~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  318 (385)
T TIGR00710       244 FGLLFALNIIAMIFGGFLNGRFIKKWGAK-----SLLRMGLILFAVSAVLLEITAILGLGSWAMIIGPMMFVGIGNSMIS  318 (385)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCHH-----HHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHH
Confidence            4 334566788899999999999999987     44443333333222222211     122233334455566666666


Q ss_pred             CchhhhhhcccCCchhhHHHHHHHHHHHhhcccCcchhHHHhhh
Q 014628          316 APVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQD  359 (421)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~  359 (421)
                      +.......+..| +.++++.++.+......|.+.+| +.+.+.+
T Consensus       319 ~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~i~~~-~~~~~~~  360 (385)
T TIGR00710       319 SIAMAYALEDFP-HVAGTASALFGTLRLVLGAIVGY-LVSLIHG  360 (385)
T ss_pred             HHHHHHHhccCc-ccchHHHHHHHHHHHHHHHHHHH-HHHhccc
Confidence            666777777765 67899999998777775666655 4554444

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=100.00  E-value=8.6e-31  Score=233.56  Aligned_cols=378  Identities=14%  Similarity=0.127  Sum_probs=250.9

Q ss_pred             ccccchhhHHHHhhhhcCCchHHHHHHHHHHHHHhhhhhh---hhHHHHHHHHHHhhhhhhhhccchhhhhhccCCCCCc
Q 014628            2 VGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSS---FDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQK   78 (421)
Q Consensus         2 lg~~i~~~~~g~l~Dr~Grr~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r   78 (421)
                      +|.++|+...|.++||+|||..+.++.++..++.++..++   +++..++++|++.|+..|......+.++.|..|++.|
T Consensus        71 iG~~~Gs~~~~~la~~~GRK~~l~~~~~l~~~~~~~~~~s~~~~~~e~li~GR~i~Gl~~gl~~~~~pmyl~E~sP~~~R  150 (485)
T KOG0569|consen   71 IGGMIGSFSSGLLADRFGRKNALLLSNLLAVLAALLMGLSKSAPSFEMLILGRLIVGLACGLSTGLVPMYLTEISPKNLR  150 (485)
T ss_pred             HHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhHHHHHHHHHHHhhcChhhhc
Confidence            6889999999999999999999999999988888877654   6889999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHhhhHHHhHH--hhhhcchhHHHHHHHHHHHHHHHHHHHhcccccccccCCccccchhhhhhccccc
Q 014628           79 TAWLSMFYMCIPTGVALGYVYGG--VVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGS  156 (421)
Q Consensus        79 ~~~~~~~~~~~~~G~~~g~~~~~--~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~  156 (421)
                      |..-.+.+.+..+|.+++..++.  .+.+...|++.+....+++++..+...+ .||+|++.-.+ +++..+.++..+..
T Consensus       151 G~~g~~~~~~~~~g~ll~~~~~l~~ilGt~~~W~~l~~~~~i~~~~~l~~l~~-~PESPk~Ll~~-k~~~~~A~~sl~~y  228 (485)
T KOG0569|consen  151 GALGTLLQIGVVIGILLGQVLGLPSLLGTEDLWPYLLAFPLIPALLQLALLPF-LPESPKYLLIK-KGDEEEARKALKFY  228 (485)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHccHHhcCCCcchHHHHHHHHHHHHHHHHHHhc-CCCCcchHHHH-cCCHHHHHHHHHHH
Confidence            99999999999999999977763  3335557999999999887776665554 58998875332 22222233333333


Q ss_pred             ccccCCcccccccchhhhhhhccccchhhhhhhhhhhhhhhHHhhcchhHHHHH-----HHHHHHHHHHHHHHHHhhHHH
Q 014628          157 EASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNV-----LGYIAYNFVIGAYSYWGPKAG  231 (421)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~  231 (421)
                      +..++.++..+...++.++++.+++.           ..+++++++++..+.-.     +.......+.+....|...++
T Consensus       229 ~G~~~~~~~~e~~~~e~~~~~~~~~~-----------~~sl~~~~~~~~lR~~~~i~~~v~~~qq~sGi~ai~~Yst~i~  297 (485)
T KOG0569|consen  229 RGKEDVEAEIEEMLREIEEEELEKKK-----------QISLRQLLKNPTLRRPLLIGIVVSFAQQFSGINAIFFYSTSIF  297 (485)
T ss_pred             hCCCcchhHHHHHHHHHHHhcccccc-----------CCcHHHHhcCcchhHHHHHHHHHHHHHHhcCcceeHHHHHHHH
Confidence            33333222222222222111111100           12355555554444322     212222233555666666666


Q ss_pred             HHhhCCccchh-HHHhhhhHHHHHHhhhhhHHHhhhccccchhhHHHHHHHHHHHHHHHHHHhh----hhh--H---HHH
Q 014628          232 YNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCL----SSL--Y---GFL  301 (421)
Q Consensus       232 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~--~---~~~  301 (421)
                      ++.+ .+.... ......+....+.++++.++.||.|||     ++++.+..++.+..+++...    +..  |   ..+
T Consensus       298 ~~aG-~~~~~a~~an~~~g~v~~~~t~~~~~lid~~gRR-----pLll~~~~~~~~~~~~~~~~~~l~~~~~~~~~y~~i  371 (485)
T KOG0569|consen  298 KTAG-FTPEEAQYANLGIGIVNLLSTLVSPFLIDRLGRR-----PLLLISLSLMAVALLLMSIALFLSNSFGSWLSYLCI  371 (485)
T ss_pred             HHcC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-----HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence            6644 554433 445667788899999999999999999     77776666655554443321    111  1   123


Q ss_pred             HHHHHHHHHHHhccCch-hhhhhcccCCchhhHHHHHHHHHHHhhcccCcchhHHHhhhccccchhhhHHHHHHHHHHHH
Q 014628          302 ALFTVGELLVFATQAPV-NYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFFLAAG  380 (421)
Q Consensus       302 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~  380 (421)
                      +..++..+..+...++. +.+.+|.+|++.|+.+++......+. ..++-...+..+.+..|.+  .|+.+.+.  +...
T Consensus       372 ~~~~~~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~-~~fiv~~~fp~l~~~~g~~--~filF~i~--~~~~  446 (485)
T KOG0569|consen  372 AAIFLFIISFAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWL-SNFIVGFAFPPLQNVIGPY--VFILFVIP--LAIF  446 (485)
T ss_pred             HHHHHHHHhhhcCCCchhHHHHHHhCCccchHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcch--hhHHHHHH--HHHH
Confidence            34444445555554444 66677888889999999999777776 6666677888889988853  34444333  3333


Q ss_pred             HHHHhhhhcc-ccccccccccccc
Q 014628          381 IWFVGIFLKS-IDKFNEDGENQIS  403 (421)
Q Consensus       381 ~~~~~~~~~~-~~~~~~~~~~~~~  403 (421)
                      ..+.++++|| |+|+.+|..++.+
T Consensus       447 ~i~~~~~lPETkgr~~~eI~~~~~  470 (485)
T KOG0569|consen  447 LIYLYRYLPETKGRTPYEIIEELE  470 (485)
T ss_pred             HHHHHHhCcccCCCCHHHHHHHHH
Confidence            3444557787 7787776655544

>PRK10504 putative transporter; Provisional

Probab=100.00  E-value=2.7e-30  Score=240.97  Aligned_cols=343  Identities=13%  Similarity=0.094  Sum_probs=236.5

Q ss_pred             ccccchhhHHHHhhhhcCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhhhhhhhccchhhhhhccCCCCCchhH
Q 014628            2 VGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAW   81 (421)
Q Consensus         2 lg~~i~~~~~g~l~Dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~   81 (421)
                      ++.+++.+++|+++||+|||++++.+.++.+++.++++++++++.+++.|+++|++.+...+...+++.|++|+++|+++
T Consensus        56 ~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (471)
T PRK10504         56 LTVAVMLPASGWLADRVGVRNIFFTAIVLFTLGSLFCALSGTLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAA  135 (471)
T ss_pred             HHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHH
Confidence            45678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhhHHHhHHhhhhcchhHHHHHHHHHHHHHHHHHHHhcccccccccCCccccchhhhhhc------cc-
Q 014628           82 LSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASV------SE-  154 (421)
Q Consensus        82 ~~~~~~~~~~G~~~g~~~~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~------~~-  154 (421)
                      +++.....++|..+||.+++.+.++.|||+.|++......+..++.....|+....   +++.+.......      .. 
T Consensus       136 ~~~~~~~~~~g~~~g~~~~g~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~~~~~~---~~r~~~~~~~~~~~~~~~~~~  212 (471)
T PRK10504        136 MTFVTLPGQVGPLLGPALGGLLVEYASWHWIFLINIPVGIIGAIATLMLMPNYTMQ---TRRFDLSGFLLLAVGMATLTL  212 (471)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhCCCcccc---CCCCChHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999998877766666655554543211   111110000000      00 


Q ss_pred             ccccccCCcccccccchh--------hhhhhccccchhhhhhhhhhhhhhhHHhhcchhHHHHHHHHHHHHHHHHHHHHH
Q 014628          155 GSEASNLNDHVSEDISDQ--------ASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYW  226 (421)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  226 (421)
                      ..+..+............        .....+++..        ++...+. ++++||.++......++..........+
T Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~-~l~~~~~~~~~l~~~~~~~~~~~~~~~~  283 (471)
T PRK10504        213 ALDGSKGLGLSPLAIAGLVAVGVVALLLYLLHARNN--------NRALFSL-KLFRTRTFSLGLAGSFAGRIGSGMLPFM  283 (471)
T ss_pred             HHhcCCcCCcchHHHHHHHHHHHHHHHHHHHHHhcC--------CCCccCH-HHhcccchHHHHHHHHHHHHHHHHHHHH
Confidence            000000000000000000        0000000000        0001122 3678898888887777777777777778


Q ss_pred             hhHHHHHhhCCccchhHH-HhhhhHHHHHHhhhhhHHHhhhccccchhhHHHHHHHHHHHHHHHHHHhh---hhhHHHHH
Q 014628          227 GPKAGYNIYHMSNADMMF-GGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCL---SSLYGFLA  302 (421)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~  302 (421)
                      .|.|++...+.++....+ .....++.+++.++.+++.||+++|     +.+..+..+..+........   ++.+....
T Consensus       284 ~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (471)
T PRK10504        284 TPVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNRFGYR-----RVLVATTLGLALVSLLFMLVALLGWYYLLPF  358 (471)
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCch-----HHHHHHHHHHHHHHHHHHhccccccHHHHHH
Confidence            899988777777654433 3445566677778899999999988     66665555444443333322   22222233


Q ss_pred             HHHHHHHHHHhccCchhhhhhcccCCchhhHHHHHHHHHHHhhcccCcchhHHHhhhccc
Q 014628          303 LFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVN  362 (421)
Q Consensus       303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~g  362 (421)
                      ...+.+.+.+...+.......+.+|++.++.++++.+..... |..+|+.+.|.+.+..|
T Consensus       359 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-g~~ig~~i~g~ll~~~g  417 (471)
T PRK10504        359 VLFLQGMVNSTRFSSMNTLTLKDLPDNLASSGNSLLSMIMQL-SMSIGVTIAGLLLGLFG  417 (471)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCHHhccchHHHHHHHHHH-HHHHHHHHHHHHHHHhh
Confidence            344555666667777788888899999999999999766666 98999999999988765

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=100.00  E-value=5.6e-30  Score=233.18  Aligned_cols=301  Identities=15%  Similarity=0.074  Sum_probs=209.9

Q ss_pred             ccccchhhHHHHhhhhcCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhhhhhhhccchhhhhhccCCCCCchhH
Q 014628            2 VGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAW   81 (421)
Q Consensus         2 lg~~i~~~~~g~l~Dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~   81 (421)
                      +++.+++++.|+++||+|||+++..+.++..++.+++.++++++.+++.|+++|++.+...+...+++.|++|+++|+++
T Consensus        49 ~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~  128 (392)
T PRK10473         49 AGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLCSLAETSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRRRAKV  128 (392)
T ss_pred             HHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHHHHHH
Confidence            46678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhhHHHhHHhhhhcchhHHHHHHHHHHHHHHHHHHHhcccccccccCCccccchhhhhhcccccccccC
Q 014628           82 LSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNL  161 (421)
Q Consensus        82 ~~~~~~~~~~G~~~g~~~~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (421)
                      +++.+....+|..++|.+++.+.+..+||+.|++.+++.++..++.++..||+++..   ++.+..              
T Consensus       129 ~~~~~~~~~i~~~~~~~i~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~---~~~~~~--------------  191 (392)
T PRK10473        129 LSLLNGITCIIPVLAPVLGHLIMLKFPWQSLFYTMAAMGILVLLLSLFILKETRPAR---APAASS--------------  191 (392)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCcChHHHHHHHHHHHHHHHHHHHHHcCCCCCcc---cCCccc--------------
Confidence            999999999999999999999888889999999999887777776666666532110   000000              


Q ss_pred             CcccccccchhhhhhhccccchhhhhhhhhhhhhhhHHhhcchhHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhCCccch
Q 014628          162 NDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNAD  241 (421)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (421)
                                                     ..+..++.++++.++...+...+.......+..+.|.+.++..+.++..
T Consensus       192 -------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  240 (392)
T PRK10473        192 -------------------------------KPRENSESLLNRFFLSRLVITTLSVTVILTFVNTSPVLLMEQMGFSRGE  240 (392)
T ss_pred             -------------------------------hHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHcCCCHHH
Confidence                                           0012234456666665444444444444455667788888777877654


Q ss_pred             h-HHHhhhhHHHHHHhhhhhHHHhhhccccchhhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhccCchhh
Q 014628          242 M-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNY  320 (421)
Q Consensus       242 ~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (421)
                      . .......++.+++.++.+++.||+++|     +.+..+..+.....+.....++.........+...+.+...+..  
T Consensus       241 ~~~~~~~~~~~~i~~~~~~~~l~~r~g~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~--  313 (392)
T PRK10473        241 YAIIMALTAGVSMTVSFSTPFALGIFKPR-----TLMLTSQVLFLAAGITLALSPSHAVSLFGITLICAGFSVGFGVA--  313 (392)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH--
Confidence            4 334566778889999999999999988     66555555444444443333333333333333333333333222  


Q ss_pred             hhhcccCCchh-hHHHHHHHHHHHhhcccCcchhHHHhhhccc
Q 014628          321 VCLHSVKPSLR-ALSMAISTVSIHIFGDVPSSPLVGVLQDHVN  362 (421)
Q Consensus       321 ~~~~~~~~~~~-~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~g  362 (421)
                      ...+..|.++| +.+.++.    . ++..+++.+.+++.+..|
T Consensus       314 ~~~~~~~~~~~~g~~~~~~----~-~~~~~g~~~~~~l~~~~g  351 (392)
T PRK10473        314 MSQALGPFSLRAGVASSTL----G-IAQVCGSSLWIWLAAVLG  351 (392)
T ss_pred             HHHHhccCcccccHHHHHH----H-HHHHHHHHHHHHHHHHhc
Confidence            22333344333 3333333    2 255566778888888776

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=99.98  E-value=3.4e-31  Score=248.39  Aligned_cols=342  Identities=14%  Similarity=0.142  Sum_probs=245.8

Q ss_pred             ccccchhhHHHHhhhhcCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhhhhhhhccchhhhhhccCCCCCchhH
Q 014628            2 VGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAW   81 (421)
Q Consensus         2 lg~~i~~~~~g~l~Dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~   81 (421)
                      ++.+++.++.|+++||+|||++++.+.++..++.+++++++|++.+++.|+++|++.+...+...+++.|++|+++|+++
T Consensus        48 ~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~  127 (485)
T TIGR00711        48 LANAISIPLTGWLAKRFGTRRLFLISTFAFTLGSLLCGVAPNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRA  127 (485)
T ss_pred             HHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHH
Confidence            46678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhhHHHhHHhhhhcchhHHHHHHHHHHHHHHHHHHHhcccccccccCCccccchhhhh-------hccc
Q 014628           82 LSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVA-------SVSE  154 (421)
Q Consensus        82 ~~~~~~~~~~G~~~g~~~~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~-------~~~~  154 (421)
                      ++++..+..+|..+||.+++.+.++++||+.|++.++++++..++.++..|++++..  .++.+.....       ....
T Consensus       128 ~~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~d~~g~~l~~~~~~~~~~  205 (485)
T TIGR00711       128 MAIWGLTVLVAPALGPTLGGWIIENYHWRWIFLINVPIGIIVVVVAFFILPRDKPAA--SENFDFLGLLLLSVGLGSLLY  205 (485)
T ss_pred             HHHHHHHHHHHhhhhhccHhHhccCcCceehhhhhhHHHHHHHHHHHHHcCCccccc--cCCCcHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999998887777776666666532211  1111110000       0000


Q ss_pred             ccccccCCcccccccchhh---------hhhhccccchhhhhhhhhhhhhhhHHhhcchhHHHHHHHHHHHHHHHHHHHH
Q 014628          155 GSEASNLNDHVSEDISDQA---------SERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSY  225 (421)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  225 (421)
                      .....+..+...+......         .....+.+.        ++...+ .+++++|.++...+..++.....+....
T Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (485)
T TIGR00711       206 GLSEGPERGWFDSNEILILSITGLVAIIAFVVWELTD--------DNPLVD-LRLFKYRNFTIGCVYMSLLGLGLYGSFY  276 (485)
T ss_pred             HHhhCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHcC--------CCCccC-HHHHcCCChHHHHHHHHHHHHHHHHHHH
Confidence            0000000000000000000         000000000        000111 2467888888888777788888888889


Q ss_pred             HhhHHHHHhhCCccchhH-HHhhhhHHHHHHhhhhhHHHhhhccccchhhHHHHHHHHHHHHHHHHHHh--h--hhhHHH
Q 014628          226 WGPKAGYNIYHMSNADMM-FGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFC--L--SSLYGF  300 (421)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~  300 (421)
                      +.|.|+++..+.++.... ......++.+++.++.|++.||+++|     +.+..+..+..........  .  .+.+..
T Consensus       277 ~~p~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~-----~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  351 (485)
T TIGR00711       277 LLPLYLQQVLGYTALQAGLHILPVGLAPMLSSPIAGRMGDKIDPR-----KLVTIGLILYAVGFYWRAFTFTPDTPFLAI  351 (485)
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcH-----HHHHHHHHHHHHHHHHHhccCCCCCCHHHH
Confidence            999999998888865553 34556788899999999999999988     6665555555544444331  1  233444


Q ss_pred             HHHHHHHHHHHHhccCchhhhhhcccCCchhhHHHHHHHHHHHhhcccCcchhHHHhhhc
Q 014628          301 LALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDH  360 (421)
Q Consensus       301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~  360 (421)
                      .....+.+++.+...++......+.+|+++++++.|+.+..... |+.+|+.+.+.+.++
T Consensus       352 ~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-g~~ig~~i~g~~~~~  410 (485)
T TIGR00711       352 ALPQFIRGFGMGCFFMPLTTIALSGLPPHKIARGSSLSNFTRQL-GGSIGTALITTILTN  410 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence            45566677777777777777788889999999999999766665 889999999988875

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>TIGR00897 2A0118 polyol permease family

Probab=99.98  E-value=1.3e-29  Score=230.90  Aligned_cols=327  Identities=13%  Similarity=0.159  Sum_probs=225.4

Q ss_pred             ccccchhhHHHHhhhhcCCchHHHHHHHHHHHHHhhhh---h-hhhHHHHHHHHHHhhhhhhhhccchhhhhhccCCCCC
Q 014628            2 VGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCG---S-SFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQ   77 (421)
Q Consensus         2 lg~~i~~~~~g~l~Dr~Grr~~~~~~~~~~~~~~~~~~---~-~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~   77 (421)
                      +++.+++++.|+++||+||||++..+.++++++++++.   + .++++.+++.|+++|++.+...+...+.+.+++|+++
T Consensus        59 ~~~~i~~~~~g~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~G~g~~~~~~~~~~~~~~~~~~~~  138 (402)
T TIGR00897        59 IAAAISAWISGVVAEIIGPLKTMMIGLLLWCVGHAAFIVFGLGHANYPLILLFYGIRGLGYPLFAYSFLVWVVYNTKQDN  138 (402)
T ss_pred             HHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHcchHHHHhHHHHHHHHhCCHHH
Confidence            46778999999999999999999999999998877653   3 3578888999999999998888888888999999999


Q ss_pred             chhHHHHHHHHHHHHh-hhHHHhHHhhhhcchhHHHHHHHHHHHHHHHHHHHhcccccccccCCccccchhhhhhccccc
Q 014628           78 KTAWLSMFYMCIPTGV-ALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGS  156 (421)
Q Consensus        78 r~~~~~~~~~~~~~G~-~~g~~~~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~  156 (421)
                      |++++|+.+.+.++|. +++|.+++.+.+..||+..++......++..++.+++.++.++    +++.++.         
T Consensus       139 ~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~---------  205 (402)
T TIGR00897       139 LSSAVGWFWAVYSIGIGVFGSYYSSYAIPAFGEMNTLWSALAFVLTGGVIALFSNKDIFT----PQHMQTR---------  205 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHhccCCCCC----cccccCC---------
Confidence            9999999999999997 6899999999888887666555444333333333333333110    0000000         


Q ss_pred             ccccCCcccccccchhhhhhhccccchhhhhhhhhhhhhhhHHhhcchhHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhC
Q 014628          157 EASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYH  236 (421)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (421)
                                +                     +.++..+.++.++++|.++...+..++.....++..++.|.|.++ .+
T Consensus       206 ----------~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~g  253 (402)
T TIGR00897       206 ----------E---------------------KFSELGKAATILFTNPNVLLGGMVRIINTIGLFGFAVFLPMFVAE-LG  253 (402)
T ss_pred             ----------c---------------------chhhHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cC
Confidence                      0                     000111235567889999888777777777788888999999866 67


Q ss_pred             Cccchh-HHHhhhhHHHHHHhhhhhHHHhhhccccchhhHHHH-HHHHHHHHHH-HHHH----hhhhhHHHHHHHHHHHH
Q 014628          237 MSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLS-AATFLGAISC-LTAF----CLSSLYGFLALFTVGEL  309 (421)
Q Consensus       237 ~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~----~~~~~~~~~~~~~~~~~  309 (421)
                      .+..+. .......++..++.+..|+++||++||     +... ...+...+.. .+..    ..++.+...+..++.+.
T Consensus       254 ~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~-----~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~G~  328 (402)
T TIGR00897       254 FSTSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWM-----NTVRWFGGVGCGIFTLALYYIPQHFGHSFAVALIIAIALGI  328 (402)
T ss_pred             CChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcch-----hHHHHHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHH
Confidence            765444 334566788899999999999999987     3322 1111111111 1111    11233444444555555


Q ss_pred             HHHhccCchhhhhhcccCCchhhHHHHHHHHHHHhhcccCcchhHHHhhhccccchhhhHHHHHHHHHHHHHH
Q 014628          310 LVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFFLAAGIW  382 (421)
Q Consensus       310 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~  382 (421)
                      +.+... +......+ .++++|+++.|+.+...+. |..++|.+.|.+.|..| +...+++.+++.+++.+..
T Consensus       329 ~~~~~~-~~~~~~~~-~~~~~~g~~~g~~~~~~~l-g~~~gp~i~g~l~~~~g-~~~~~~~~a~~~~i~~~~~  397 (402)
T TIGR00897       329 FLAGYV-PLAAVFPT-LAPKHKGAAMSVLNLSAGL-SAFLAPAIAVLFIGFFG-AIGVVWIFAALYVVSAFLT  397 (402)
T ss_pred             HHHHHH-HHHHHHHh-hCcchhHHHHHHHHHHHHH-HHHHHHHHHHHHHhhcc-hHHHHHHHHHHHHHHHHHH
Confidence            555433 34444444 5667999999999877766 88899999999999877 5566666666555544443

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=99.98  E-value=7.1e-30  Score=218.11  Aligned_cols=322  Identities=15%  Similarity=0.109  Sum_probs=255.4

Q ss_pred             cchhhHHHHhhhhcCCchHHHHHHHHHHHHHhhhhhhhhHH---HHHHHHHHhhhhhhhhccchhhhhhccCCCCCchhH
Q 014628            5 LVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFW---SIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAW   81 (421)
Q Consensus         5 ~i~~~~~g~l~Dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~---~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~   81 (421)
                      ++.-++.|.+.||+|.|++..+++++..+-.+..+++.+.+   ++++++++.|++.+ .+.+...++++|+|||++|.+
T Consensus        63 allRl~~g~l~drfGgR~~~~~s~~l~~IP~~~~~~a~~~~~~~~ll~~gll~G~~Ga-sFav~m~~~s~~fP~~~qG~A  141 (417)
T COG2223          63 ALLRLPYGFLTDRFGGRKWTILSMLLLLIPCLGLAFAVTYPSTWQLLVIGLLLGLAGA-SFAVGMPNASFFFPKEKQGLA  141 (417)
T ss_pred             HHHHHHHHhhhcccCchHHHHHHHHHHHHHHHHHHHHccCCchHHHHHHHHHHhcccc-eehcccccccccCChhhhhHH
Confidence            45668899999999999999999999999999999986555   99999999999887 677899999999999999999


Q ss_pred             HHHHHHHHHHHhhhHHHhHHhhhhcch---hHHHHHHHHHHHHHHHHHHHhcccccccccCCccccchhhhhhccccccc
Q 014628           82 LSMFYMCIPTGVALGYVYGGVVGSHLN---WRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEA  158 (421)
Q Consensus        82 ~~~~~~~~~~G~~~g~~~~~~l~~~~~---wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (421)
                      +|++. ..|+|..+...++..+....+   ||....+..+..++..++.++...+.+..+...++...            
T Consensus       142 lGI~g-~GN~G~av~q~~~P~v~~~~g~~~w~~~~~i~~~~l~v~~v~~~~~~~d~p~~r~~~~~~~~------------  208 (417)
T COG2223         142 LGIAG-AGNLGVAVAQLVAPLVAVAFGFLAWRNVAGIYVVALAIAAVLAWLGMNDVPEHRASVKPQLP------------  208 (417)
T ss_pred             HHHhc-cccccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhccccccch------------
Confidence            99999 999999999999999988888   99999999988888888888776443322111111000            


Q ss_pred             ccCCcccccccchhhhhhhccccchhhhhhhhhhhhhhhHHhhcchhHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhCCc
Q 014628          159 SNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMS  238 (421)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (421)
                                                          ..++.++++++.|.+.+.++.....+.++..++|.|++++++.+
T Consensus       209 ------------------------------------~~~~~v~~~~~~W~lsllY~~tFG~Fvgfs~~l~~~~~~~fg~~  252 (417)
T COG2223         209 ------------------------------------AQLKAVFSNKDTWLLSLLYFATFGGFVGFSAYLPMYLVTQFGLS  252 (417)
T ss_pred             ------------------------------------hHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence                                                23667788999999999999999999999999999999999999


Q ss_pred             cchh-HHHhhhhHHHHHHhhhhhHHHhhhccccchhhHHHHHHHHHHHHHHHHH-Hhh------hhhHHHHHHHHHHHHH
Q 014628          239 NADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTA-FCL------SSLYGFLALFTVGELL  310 (421)
Q Consensus       239 ~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~------~~~~~~~~~~~~~~~~  310 (421)
                      +... .+.....+.+.+.++++|+++||+|.+     +........+.+..... ...      .+.......+.....+
T Consensus       253 ~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~-----rv~~~~f~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~l~~~  327 (417)
T COG2223         253 PVTAGLIAFLFPLIGALARPLGGWLSDRIGGR-----RVTLAVFVGMALAAALLSLFLTGFGHGGSFVVFVAVFLALFVF  327 (417)
T ss_pred             hhhHHHHHHHHHHHHHHHHhccchhhhhccch-----hHHHHHHHHHHHHHHHHHccccccccCcchHHHHHHHHHHHHH
Confidence            7665 555666778888999999999999988     55544444444433333 322      3445555556667777


Q ss_pred             HHhccCchhhhhhcccCCchhhHHHHHHHHHHHhhcccCcchhHHHhhhccccchhhhHHHHHHHHHHHHHHH
Q 014628          311 VFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFFLAAGIWF  383 (421)
Q Consensus       311 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~  383 (421)
                      .+......+..+...+| ++.|.+.|+.. ..+.+|+..-|...|...+..|++...|+++..+.+++.+...
T Consensus       328 ~G~GnGsvfk~Ip~if~-~~~G~v~G~vg-a~G~lGGf~lp~~~g~~~~~tg~~~~~f~~~~~~~~~a~v~~~  398 (417)
T COG2223         328 AGLGNGSVFKMIPVIFP-KETGAVTGIVG-AIGGLGGFFLPLAFGVSLDLTGSYTGAFMLLLAFYLVALVLTW  398 (417)
T ss_pred             hccCcchheeechHHHH-hhhhHHHHHHH-HhccccccchhHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence            77888888888777664 47888999995 4444588888999999999999888888888777666655443

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.98  E-value=3.7e-30  Score=241.82  Aligned_cols=349  Identities=11%  Similarity=0.102  Sum_probs=217.3

Q ss_pred             ccccchhhHHHHhhhhcCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhhhhhhhccchhhhhhccCCCCCchhH
Q 014628            2 VGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAW   81 (421)
Q Consensus         2 lg~~i~~~~~g~l~Dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~   81 (421)
                      +++.+++++.|+++||+|||+++..+.++.+++.+++++++|++.+++.|++.|++.+...+....++.|++|+++|+++
T Consensus        66 ~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~  145 (496)
T PRK03893         66 ISRWFGGLLLGAMGDRYGRRLAMVISIVLFSVGTLACGFAPGYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKA  145 (496)
T ss_pred             HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHH
Confidence            46778899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhhHHHhHHhhhhcchhHHHHHHHHHHHHHHHHHHHhcccccccccCCccccchhhhhhcccccccccC
Q 014628           82 LSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNL  161 (421)
Q Consensus        82 ~~~~~~~~~~G~~~g~~~~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (421)
                      +++...+..+|..++|.+++.+.++++||+.|++..+..+ ..++.....||..+..+++++.+..              
T Consensus       146 ~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~f~~~~~~~~-~~~~~~~~~p~~~~~~~~~~~~~~~--------------  210 (496)
T PRK03893        146 SGFLISGFSIGAVVAAQVYSLVVPVWGWRALFFIGILPII-FALWLRKNLPEAEDWKEKHAGKAPV--------------  210 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHH-HHHHHHHhCCCchhhhhhccccccc--------------
Confidence            9999999999999999999999999999999987544332 2222222224422110000000000              


Q ss_pred             Ccccccccchhhhhhhccccc-------hhhhhhhhhhhh-------------hhh-H--HhhcchhHHHHHHHHHHHHH
Q 014628          162 NDHVSEDISDQASERSIKSIG-------ESRFLNQLSQFS-------------QDT-K--VLLQEKVYVVNVLGYIAYNF  218 (421)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~-------------~~~-~--~~~~~~~~~~~~~~~~~~~~  218 (421)
                       ++..+...............       ...........+             ... .  ...+.+.........+....
T Consensus       211 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  289 (496)
T PRK03893        211 -RTMVDILYRGEHRIINILLTLAAAAALWFCFAGNLQNAAIVAVLGLLCAAIFISFMVQSSGKRWPTGVMLMVVVLFAFL  289 (496)
T ss_pred             -hhHHHHHhcchhHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHh
Confidence             00000000000000000000       000000000000             000 0  00011111111111111111


Q ss_pred             HHHHHHHHhhHHHHHhhCCccchh-HHHhhhhHHHHHHhhhhhHHHhhhccccchhhHHHHHHHHHHHHHHHHHHhh--h
Q 014628          219 VIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCL--S  295 (421)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~  295 (421)
                      .......++|.|+++..+.+..+. .+.....++.+++.++.|++.||+++|     +.+..+..+..+..+.....  .
T Consensus       290 ~~~~~~~~lp~~l~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr~g~~-----~~~~~~~~~~~~~~~~~~~~~~~  364 (496)
T PRK03893        290 YSWPIQALLPTYLKTDLGYDPHTVANVLFFSGFGAAVGCCVGGFLGDWLGTR-----KAYVCSLLISQLLIIPVFAIGGA  364 (496)
T ss_pred             ccchHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcch-----HHHHHHHHHHHHHHHHHhhcccc
Confidence            122355788999987777776554 444667788899999999999999988     55555444444333322222  2


Q ss_pred             hhHHHHHHHHHHHHHHHhccCchhhhhhcccCCchhhHHHHHHHHHHHhhcccCcchhHHHhhhccccchhhhHHHHH
Q 014628          296 SLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTS  373 (421)
Q Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~  373 (421)
                      +.+.......+.+.......+....++.+.+|++.|++++|+.+..... |..++|.+.|.+.|..| +...+...+.
T Consensus       365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-g~~lgp~l~g~l~~~~g-~~~~~~~~~~  440 (496)
T PRK03893        365 NVWVLGLLLFFQQMLGQGISGLLPKLIGGYFDTEQRAAGLGFTYNVGAL-GGALAPILGALIAQRLD-LGTALASLSF  440 (496)
T ss_pred             HHHHHHHHHHHHHHHhcccchhhHHHHHhhCCHHHhhcccchhhhhhhH-HHHHHHHHHHHHhccCC-hHHHHHHHHH
Confidence            2222222222223333334455667788999999999999999766665 88899999999999876 5555544443

>TIGR00895 2A0115 benzoate transport

Probab=99.97  E-value=1.9e-30  Score=237.36  Aligned_cols=334  Identities=16%  Similarity=0.197  Sum_probs=229.6

Q ss_pred             ccccchhhHHHHhhhhcCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhhhhhhhccchhhhhhccCCCCCchhH
Q 014628            2 VGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAW   81 (421)
Q Consensus         2 lg~~i~~~~~g~l~Dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~   81 (421)
                      ++..+++++.|+++||+|||+++..+.++..++.++..++++++.+++.|++.|++.+...+...+++.|++|+++|+++
T Consensus        63 ~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~  142 (398)
T TIGR00895        63 IGMAFGALFFGPLADRIGRKRVLLWSILLFSVFTLLCALATNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTA  142 (398)
T ss_pred             HHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhcccccchhhHHHHHHHHcCHHhhchh
Confidence            45678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhhHHHhHHhhhhcchhHHHHHHHHHHHHHHHHHHHhcccccccccCCccccchhhhhhcccccccccC
Q 014628           82 LSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNL  161 (421)
Q Consensus        82 ~~~~~~~~~~G~~~g~~~~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (421)
                      +++...+..+|..+++.+++.+.+..+||+.|++.+++.++..++.+...||+++...++++++..   +..++......
T Consensus       143 ~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~  219 (398)
T TIGR00895       143 VGLMFCGYPIGAAVGGFLAGWLIPVFGWRSLFYVGGIAPLLLLLLLMRFLPESIDFLVSKRPETVR---RIVNAIAPQMQ  219 (398)
T ss_pred             HhhHhhHHHHHHHHHHHHHHHHhhcccceeehhhhhhHHHHHHHHHHHhCCCCChHHHhcCHHHHH---HHHHHHHHhcc
Confidence            999999999999999999999999999999999987776666666666667654321111000000   00000000000


Q ss_pred             CcccccccchhhhhhhccccchhhhhhhhhhhhhhhHHhhcchhHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhCCccch
Q 014628          162 NDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNAD  241 (421)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (421)
                      .++ ++...    ++..+.       +..++..+..+...+.+..+...+..++..........+.|.+. +..+.++..
T Consensus       220 ~~~-~~~~~----~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~  286 (398)
T TIGR00895       220 AEA-QSALP----EQKATQ-------GTKRSVFKALFQGKTARITVLLWLLYFMLLVGVYFLTNWLPKLM-VELGFSLSL  286 (398)
T ss_pred             ccc-ccccc----cccccc-------chhhHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCCCHHH
Confidence            000 00000    000000       00011111111111223334444444555566667778888544 445666443


Q ss_pred             h-HHHhhhhHHHHHHhhhhhHHHhhhccccchhhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhccCchhh
Q 014628          242 M-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNY  320 (421)
Q Consensus       242 ~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (421)
                      . .......++.+++.++.+++.||+++|     ..............++.....+.+......++.+++.+...+....
T Consensus       287 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  361 (398)
T TIGR00895       287 AATGGALFNFGGVIGSIIFGWLADRLGPR-----VTALLLLLGAVFAVLVGSTLFSPTLLLLLGAIAGFFVNGGQSGLYA  361 (398)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhcchH-----HHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3 445667788899999999999999986     4443333333333333332345555566667777888888888899


Q ss_pred             hhhcccCCchhhHHHHHHHHHHHhhcccCcchhHHHh
Q 014628          321 VCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVL  357 (421)
Q Consensus       321 ~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l  357 (421)
                      ...+.+|+++|+++.|+.+...+. |..++|.+.|++
T Consensus       362 ~~~~~~~~~~~g~~~g~~~~~~~~-g~~~g~~~~G~l  397 (398)
T TIGR00895       362 LMALFYPTAIRATGVGWAIGIGRL-GAIIGPILAGYL  397 (398)
T ss_pred             HHhhcCCHHHHHHHHHHHHHHHHH-HHHHHHHhHHhc
Confidence            999999999999999999766665 888999888865

>PRK12382 putative transporter; Provisional

Probab=99.97  E-value=1.2e-29  Score=230.99  Aligned_cols=317  Identities=15%  Similarity=0.084  Sum_probs=218.1

Q ss_pred             ccccchhhHHHHhhhhcCCchHHHHHHHHHHHHHhhhh--------hhhhHHHHHHHHHHhhhhhhhhccchhhhhhccC
Q 014628            2 VGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCG--------SSFDFWSIAICRMLVGVGEASFISLAAPFIDDNA   73 (421)
Q Consensus         2 lg~~i~~~~~g~l~Dr~Grr~~~~~~~~~~~~~~~~~~--------~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~   73 (421)
                      +++.++++++|+++||+||||++..+.+...++.+...        ..++++.+++.|+++|++.+...+...+++.|++
T Consensus        62 ~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~  141 (392)
T PRK12382         62 LATVLTRGYAGRLADQYGAKRSALQGMLACGLAGLAYLLAAILPVSAPFKFALLVVGRLILGFGESQLLTGALTWGLGLV  141 (392)
T ss_pred             HHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence            46678899999999999999999999888776654322        2368899999999999999998998999999999


Q ss_pred             CCCCchhHHHHHHHHHHHHhhhHHHhHHhhhhcchhHHHHHHHHHHHHHHHHHHHhcccccccccCCccccchhhhhhcc
Q 014628           74 PVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVS  153 (421)
Q Consensus        74 ~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~  153 (421)
                      |+|+|++++++.+.+...|..+||++++.+.+..|||+.+.+..+..++...    ..++.++.  +++++++       
T Consensus       142 ~~~~r~~a~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~~~~~~~~~~----~~~~~~~~--~~~~~~~-------  208 (392)
T PRK12382        142 GPKHSGKVMSWNGMAMYGALAAGAPLGLLLHSHFGFAALALTTMVLPLLAWA----FNGTVRKV--PAHAGER-------  208 (392)
T ss_pred             CccccchhhhHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHH----HHHhccCC--CCCcccC-------
Confidence            9999999999999999999999999999999989999887766543322221    11211100  0000000       


Q ss_pred             cccccccCCcccccccchhhhhhhccccchhhhhhhhhhhhhhhHHhhcchhHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 014628          154 EGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYN  233 (421)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (421)
                                                        .+.   .+..+.+. .+.     +...+..........+.|.|+++
T Consensus       209 ----------------------------------~~~---~~~~~~~~-~~~-----~~~~l~~~~~~~~~~~~~~~~~~  245 (392)
T PRK12382        209 ----------------------------------PSL---WSVVGLIW-KPG-----LGLALQGVGFAVIGTFVSLYFAS  245 (392)
T ss_pred             ----------------------------------chH---HHHHHHHH-HhH-----HHHHHHHHHHhHHHHHHHHHHHh
Confidence                                              000   00111111 111     11222334444556777777766


Q ss_pred             hhCCccchhHHHhhhhHHHHHHhhhhhHHHhhhccccchhhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHh
Q 014628          234 IYHMSNADMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVFA  313 (421)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  313 (421)
                      . +.+... .......++.+++.+..+++.||+++|     +.+.....+...........++.+...+...+.+++.+.
T Consensus       246 ~-~~~~~~-~~~~~~~~~~~~~~~~~g~l~~r~g~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~  318 (392)
T PRK12382        246 K-GWAMAG-FTLTAFGGAFVLMRVLFGWMPDRFGGV-----KVAIVSLLVETVGLLLLWLAPTAWVALAGAALTGAGCSL  318 (392)
T ss_pred             c-CCchhH-HHHHHHHHHHHHHHHHHHHHHHhcCCC-----eehHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHh
Confidence            3 343322 223445566788899999999999987     555544444444444444445555555556666666666


Q ss_pred             ccCchhhhhhcccCCchhhHHHHHHHHHHHhhcccCcchhHHHhhhccccchhhhHHHHHHHHHHHHHHH
Q 014628          314 TQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFFLAAGIWF  383 (421)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~  383 (421)
                      ..+.......+..|+++|+++.|+.+...+. |..++|.+.|++.|..| |+..+.+.+.+.+++.+..+
T Consensus       319 ~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~-g~~ig~~~~g~l~~~~g-~~~~~~~~~~~~~~~~~~~~  386 (392)
T PRK12382        319 IFPALGVEVVKRVPSQVRGTALGGYAAFQDI-AYGVSGPLAGMLATSFG-YPSVFLAGAISAVLGIIVTI  386 (392)
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhC-chHHHHHHHHHHHHHHHHHH
Confidence            6666777788889999999999999766665 88999999999999876 77888877766655554443

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=99.97  E-value=3.2e-29  Score=227.31  Aligned_cols=302  Identities=16%  Similarity=0.180  Sum_probs=217.6

Q ss_pred             ccccchhhHHHHhhhhcCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhhhhhhhccchhhhhhccCCCCCchhH
Q 014628            2 VGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAW   81 (421)
Q Consensus         2 lg~~i~~~~~g~l~Dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~   81 (421)
                      ++..++++++|+++||+|||+++..+.++.+++.+++.++++++.+++.|+++|++.+...+...+++.|++|+++|+++
T Consensus        37 ~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~  116 (377)
T PRK11102         37 LGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALAQTIDQLIYMRFLHGLAAAAASVVINALMRDMFPKEEFSRM  116 (377)
T ss_pred             HHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence            45678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhhHHHhHHhhhhcchhHHHHHHHHHHHHHHHHHHHhcccccccccCCccccchhhhhhcccccccccC
Q 014628           82 LSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNL  161 (421)
Q Consensus        82 ~~~~~~~~~~G~~~g~~~~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (421)
                      +++.+....+|..++|.+++.+.+..+||+.|++.+++.++..++..+..||.++..   ++++.               
T Consensus       117 ~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~---------------  178 (377)
T PRK11102        117 MSFVTLVMTIAPLLAPIIGGWLLVWFSWHAIFWVLALAAILAAALVFFFIPETLPKE---RRQPF---------------  178 (377)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHhCCccCccc---ccCCC---------------
Confidence            999999999999999999999999899999999998887777666665556532110   00000               


Q ss_pred             CcccccccchhhhhhhccccchhhhhhhhhhhhhhhHHhhcchhHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhCCccch
Q 014628          162 NDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNAD  241 (421)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (421)
                                                 +.++..+++++.+++|.++...+...+.......+..+.|.++.+..+.++..
T Consensus       179 ---------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~  231 (377)
T PRK11102        179 ---------------------------HLRTTIRNFASLFRHKRVLGYMLASGFSFAGMFSFLTAGPFVYIELNGVSPQN  231 (377)
T ss_pred             ---------------------------ChHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHhCCCHHH
Confidence                                       00001234556677888777666666656666677777888888877877655


Q ss_pred             h-HHHhhhhHHHHHHhhhhhHHHhhhccccchhhHHHHHHHHHHHHH---HHHHHh-hhhhHHHHHHHHHHHHHHHhccC
Q 014628          242 M-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAIS---CLTAFC-LSSLYGFLALFTVGELLVFATQA  316 (421)
Q Consensus       242 ~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  316 (421)
                      . .......+..+++.++.+++.||+++|     +.+..+..+....   ...... ..+.+...+...+.....+....
T Consensus       232 ~g~~~~~~~~~~~~~~~~~g~l~~r~g~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (377)
T PRK11102        232 FGYYFALNIVFLFVMTIINSRFVRRVGAL-----NMLRFGLWIQFIMGIWLVVSALLDLGFWALVVGVAAFVGCVSMISS  306 (377)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCHH-----HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhH
Confidence            4 344666788889999999999999988     5554444332221   111111 11223333333333333333444


Q ss_pred             chhhhhhcccCCchhhHHHHHHHHHHHhhcccCcchhH
Q 014628          317 PVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLV  354 (421)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~  354 (421)
                      .......+.. ++.++++.++.+.....+|..+++.+.
T Consensus       307 ~~~~~~~~~~-~~~~g~~~~~~~~~~~~~g~~~g~~~~  343 (377)
T PRK11102        307 NAMAVILDEF-PHMAGTASSLAGTLRFGIGAIVGALLS  343 (377)
T ss_pred             HHHHHHhccc-cccchHHHHHHHHHHHHHHHHHHHHHH
Confidence            4455556655 488999999987665555666666443

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.97  E-value=3.6e-29  Score=226.66  Aligned_cols=312  Identities=17%  Similarity=0.188  Sum_probs=214.4

Q ss_pred             ccccchhhHHHHhhhhcCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhhhhhhhccchhhhhhccCCCCCchhH
Q 014628            2 VGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAW   81 (421)
Q Consensus         2 lg~~i~~~~~g~l~Dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~   81 (421)
                      +++.+++++.|+++||+|||+++..+.++.+++.+++++++|++.++++|+++|++.+...+.....+.+..++++|+++
T Consensus        52 l~~~~~~~~~g~l~dr~g~k~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~  131 (381)
T PRK03633         52 TGNLVGTLLAGYVIKRIGFNRSYYLASLIFAAGCAGLGLMVGFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRNRGRL  131 (381)
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence            46788999999999999999999999999999999999999999999999999999999888888888899999999999


Q ss_pred             HHHHHHHHHHHhhhHHHhHHhhhhcchhHHHHHHHHHHHHHHHHHHHhcccccccccCCccccchhhhhhcccccccccC
Q 014628           82 LSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNL  161 (421)
Q Consensus        82 ~~~~~~~~~~G~~~g~~~~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (421)
                      ++.+..+.++|..+||.+++.+.+...|...+. .+........+.+...++.  .   +++ ++               
T Consensus       132 ~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~--~---~~~-~~---------------  189 (381)
T PRK03633        132 LAAYMMVYYLGTVLGQLLVSKVSTELMSVLPWV-TGLVLAAILPLLFTRILNQ--Q---AEN-HD---------------  189 (381)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcccccccchHHHH-HHHHHHHHHHHHHhcccCC--C---CCC-CC---------------
Confidence            999999999999999999999877543333332 2221111111111111110  0   000 00               


Q ss_pred             CcccccccchhhhhhhccccchhhhhhhhhhhhhhhHHhhcchhHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhCCccch
Q 014628          162 NDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNAD  241 (421)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (421)
                                                      .++.++.+++|.++......+...........++|.|.++. +.++..
T Consensus       190 --------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~-g~s~~~  236 (381)
T PRK03633        190 --------------------------------STSIWPMLKLRQARLGVNGCIISGIVLGSLYGLMPLYLNHQ-GMSDAS  236 (381)
T ss_pred             --------------------------------CCCHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCCHHH
Confidence                                            01123345666666544434444445556667889988774 555433


Q ss_pred             h-HHHhhhhHHHHHHhhhhhHHHhhhccccchhhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhccCchhh
Q 014628          242 M-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNY  320 (421)
Q Consensus       242 ~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (421)
                      . .+.....++.+++.+..+++.||+++|     +.+..+............  ... .......+.+.+.....+....
T Consensus       237 ~g~~~~~~~~~~~~~~~~~g~l~dr~~~~-----~~l~~~~~~~~~~~~~~~--~~~-~~~~~~~l~g~~~~~~~p~~~~  308 (381)
T PRK03633        237 IGFWMALLVSAGILGQWPIGRLADRFGRL-----LVLRVQVFVVILGSIAML--SQA-AMAPALFILGAAGFTLYPVAMA  308 (381)
T ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHcCcH-----HHHHHHHHHHHHHHHHHh--hhH-HHHHHHHHHHHHHHhHHHHHHH
Confidence            3 344566678899999999999999988     555544444444333222  111 1222333444444455677777


Q ss_pred             hhhcccCCchhhHHHHHHHHHHHhhcccCcchhHHHhhhccccchhhhHHHHHHHHHH
Q 014628          321 VCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFFLA  378 (421)
Q Consensus       321 ~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~  378 (421)
                      ...+..|+++++.+.+..+...+. |..++|.+.|++.|+.+ +...|.+.+.+.++.
T Consensus       309 ~~~~~~~~~~~~~~~~~~~~~~~l-G~~igp~~~G~l~~~~g-~~~~f~~~~~~~l~~  364 (381)
T PRK03633        309 WACEKVEHHELVAMNQALLLSYTV-GSLLGPSFTAMLMQNYS-DNLLFIMIASVSFIY  364 (381)
T ss_pred             HHHccCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHH
Confidence            788888888878777877655455 99999999999999876 556666655554433

>PRK11010 ampG muropeptide transporter; Validated

Probab=99.97  E-value=1.3e-28  Score=228.65  Aligned_cols=325  Identities=14%  Similarity=0.113  Sum_probs=228.4

Q ss_pred             chhhHHHHhhhhc-----CCchH-HHHHHHHHHHHHhhhhhh---hhHHHHHHHHHHhhhhhhhhccchhhhhhccCCCC
Q 014628            6 VASPIFASLAKSH-----NPFRL-IGVGLSVWTFATAGCGSS---FDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVP   76 (421)
Q Consensus         6 i~~~~~g~l~Dr~-----Grr~~-~~~~~~~~~~~~~~~~~~---~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~   76 (421)
                      ++.+++|+++||+     ||||. +..+.+..+++..++++.   ++++.+.+.+++.|++.+...+...+++.|++|++
T Consensus        60 ~~~~l~gpl~Dr~~~~~~Grrr~~ll~~~i~~~~~~~~~a~~~~~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~  139 (491)
T PRK11010         60 VFKFLWSPLMDRYTPPFLGRRRGWLLATQLLLLVAIAAMGFLEPGTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAE  139 (491)
T ss_pred             HHHHHHHHHHHcccccCCCCchHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChh
Confidence            5788999999999     99985 667777777777777665   47888999999999999999999999999999999


Q ss_pred             CchhHHHHHHHHHHHHhhhHHHhHHhhhh-cchhHHHHHHHHHHHHHHHHHHHhcccccccccCCccccchhhhhhcccc
Q 014628           77 QKTAWLSMFYMCIPTGVALGYVYGGVVGS-HLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEG  155 (421)
Q Consensus        77 ~r~~~~~~~~~~~~~G~~~g~~~~~~l~~-~~~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~  155 (421)
                      +|+++.++...+..+|.++++.++..+.+ ..|||..|++.+++.++..+..++ .||+++..   ++++..        
T Consensus       140 ~rg~~~~i~~~g~~lG~llg~~l~~~l~~~~~GWr~~f~i~a~l~ll~~l~~~~-~~e~~~~~---~~~~~~--------  207 (491)
T PRK11010        140 ERGAGAAISVLGYRLAMLVSGGLALWLADRYLGWQGMYWLMAALLIPCIIATLL-APEPTDTI---PVPKTL--------  207 (491)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHh-cCCCcccc---ccccch--------
Confidence            99999999999999999999999999988 579999999999877666555443 45532110   000000        


Q ss_pred             cccccCCcccccccchhhhhhhccccchhhhhhhhhhhhhhhHHhhcchhHHHHHHHHHHHHHHHHHHHHHhhHHHHHhh
Q 014628          156 SEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIY  235 (421)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (421)
                                        .                +...++++++++++..+...+..++..........+.+.|+.+..
T Consensus       208 ------------------~----------------~~~~~~l~~~~~~~~~~~~ll~~~l~~~~~~~~~~~~~~~l~~~~  253 (491)
T PRK11010        208 ------------------E----------------QAVVAPLRDFFGRNNAWLILLLIVLYKLGDAFAMSLTTTFLIRGV  253 (491)
T ss_pred             ------------------h----------------hhHHHHHHHHHcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence                              0                000123555666776666655555555666666677888887777


Q ss_pred             CCccchhHHH--hhhhHHHHHHhhhhhHHHhhhccccchhhHHHHHHHHHHHHHH---HHHHhh-hhhHHHHHHHHHHHH
Q 014628          236 HMSNADMMFG--GVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISC---LTAFCL-SSLYGFLALFTVGEL  309 (421)
Q Consensus       236 ~~~~~~~~~~--~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-~~~~~~~~~~~~~~~  309 (421)
                      +.+..+....  ....++.+++.+++|+++||+++|     +.+.....+..+..   ...... ++.+......++..+
T Consensus       254 G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~-----~~l~i~~~l~~l~~l~~~~l~~~~~~~~~l~~~~~l~~~  328 (491)
T PRK11010        254 GFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLF-----RALMIFGILQGVSNAGYWLLSITDKNLYSMGAAVFFENL  328 (491)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH-----HHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence            8876555433  344578899999999999999987     44433333222211   111122 233333333344333


Q ss_pred             HHHhccCchhhhhhcccCCchhhHHHHHHHHHHHhhcccCcchhHHHhhhccccchhhhHHHHHHHHHHHHHHH
Q 014628          310 LVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFFLAAGIWF  383 (421)
Q Consensus       310 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~  383 (421)
                      +.+...+.......+..+++.+++..++.+..... |..+++.+.|++.|..| |...|.+...+.+.+.+...
T Consensus       329 ~~g~~~~~~~a~~~~l~~~~~~~t~~gl~~s~~~l-g~~~~~~~~G~l~~~~G-~~~~f~~~~~~~l~~l~~~~  400 (491)
T PRK11010        329 CGGMGTAAFVALLMTLCNKSFSATQFALLSALSAV-GRVYVGPVAGWFVEAHG-WPTFYLFSVAAAVPGLLLLL  400 (491)
T ss_pred             HHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhC-hHHHHHHHHHHHHHHHHHHH
Confidence            44444455677788888888999999999777665 77777889999999876 77777777666666554444

>PRK10133 L-fucose transporter; Provisional

Probab=99.97  E-value=1.1e-28  Score=226.06  Aligned_cols=316  Identities=15%  Similarity=0.166  Sum_probs=225.5

Q ss_pred             ccccchhhHHHHhhhhcCCchHHHHHHHHHHHHHhhh---hhhhhHHHHHHHHHHhhhhhhhhccchhhhhhccCCCCCc
Q 014628            2 VGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGC---GSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQK   78 (421)
Q Consensus         2 lg~~i~~~~~g~l~Dr~Grr~~~~~~~~~~~~~~~~~---~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r   78 (421)
                      +++.+++++.|++.||+|||+++..+.++++++.+++   .++++++.++++|+++|+|.+...+....++.|+.++++|
T Consensus        72 ~g~~i~~~~~g~l~dr~G~r~~l~~g~~~~~~~~~l~~~~~~a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~  151 (438)
T PRK10133         72 FGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSG  151 (438)
T ss_pred             HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhH
Confidence            5788999999999999999999999999999999885   5688999999999999999999999999999998777777


Q ss_pred             hhHHHHHHHHHHHHhhhHHHhHHhhhh------------------c--------chhHHHHHHHHHHHHHHHHHH-Hhcc
Q 014628           79 TAWLSMFYMCIPTGVALGYVYGGVVGS------------------H--------LNWRYAFWGEAILMLPFAVLA-FVIK  131 (421)
Q Consensus        79 ~~~~~~~~~~~~~G~~~g~~~~~~l~~------------------~--------~~wr~~f~~~~~~~~~~~~~~-~~~~  131 (421)
                      .+.+++.+....+|..+++.+++.+..                  .        .+||++|+....+..+..++. +...
T Consensus       152 ~~~~s~~~~~~~~G~~~g~~~g~~l~~~~~~~~~~~~~~~l~~~~~~~w~~~~~~~w~~~f~~~~~v~~~~~~~~~~~~~  231 (438)
T PRK10133        152 HFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMTPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKF  231 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchhhhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            778999999999999999998875430                  0        256777765443322222222 2222


Q ss_pred             cccccccCCccccchhhhhhcccccccccCCcccccccchhhhhhhccccchhhhhhhhhhhhhhhHHhhcchhHHHHHH
Q 014628          132 PLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVL  211 (421)
Q Consensus       132 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (421)
                      ||.+.     ++++..                                         +..+..++.++++++|.++...+
T Consensus       232 p~~~~-----~~~~~~-----------------------------------------~~~~~~~~~~~ll~~~~~~~~~l  265 (438)
T PRK10133        232 PALQS-----DNHSDA-----------------------------------------KQGSFSASLSRLARIRHWRWAVL  265 (438)
T ss_pred             CCCCc-----cccccc-----------------------------------------cccchhhhHHHHHhCchHHHHHH
Confidence            33110     000000                                         00001123456778888887776


Q ss_pred             HHHHHHHHHHHHHHHhhHHH-HHhhCCccchhH-HHhhhhHHHHHHhhhhhHHHhhhccccchhhHHHHHHHHHHHHHHH
Q 014628          212 GYIAYNFVIGAYSYWGPKAG-YNIYHMSNADMM-FGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCL  289 (421)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~  289 (421)
                      ..++......+...|.+.|+ ++..+.++.... ......++.++++++++++.||+++|     +.+..+..+....++
T Consensus       266 ~~~~~~~~~~~~~~~~~~~l~~~~~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~g~~-----~~l~~~~~~~~~~~~  340 (438)
T PRK10133        266 AQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPH-----KVLAAYALIAMALCL  340 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHH-----HHHHHHHHHHHHHHH
Confidence            66677777777777888885 566788865553 34667788899999999999999998     666555555444444


Q ss_pred             HHHhhhhhHHHHHHHHHHHHHHHhccCchhhhhhcccCCchhhHHHHHHHHHHHhhcccCcchhHHHhhhccccchhhhH
Q 014628          290 TAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTL  369 (421)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~  369 (421)
                      .....++. ..+..+.+.+++.+..+|..++...+..++ +.+.+.++.. ... .|+.++|.+.|.+.|..|+.+..++
T Consensus       341 ~~~~~~~~-~~~~~~~l~glg~~~i~P~~~s~a~~~~~~-~~~~as~l~~-~~~-~g~~~~~~i~G~l~~~~g~~~~~~~  416 (438)
T PRK10133        341 ISAFAGGH-VGLIALTLCSAFMSIQYPTIFSLGIKNLGQ-DTKYGSSFIV-MTI-IGGGIVTPVMGFVSDAAGNIPTAEL  416 (438)
T ss_pred             HHHHcCCh-HHHHHHHHHHHHHHHHHHHHHHHHHcccch-hhccchhHHh-HHh-ccchHHHHHHHHHHHhccchHHHHH
Confidence            43333332 234556778889999999999999988755 4677888874 333 4778889999999997664445555


Q ss_pred             HHH
Q 014628          370 ALT  372 (421)
Q Consensus       370 ~~~  372 (421)
                      +..
T Consensus       417 v~~  419 (438)
T PRK10133        417 IPA  419 (438)
T ss_pred             HHH
Confidence            433

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.97  E-value=6.9e-29  Score=223.09  Aligned_cols=302  Identities=21%  Similarity=0.309  Sum_probs=252.5

Q ss_pred             ccccchhhHHHHhhhhcCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhhhhhhhccchhhhhhccCCCCCchhH
Q 014628            2 VGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAW   81 (421)
Q Consensus         2 lg~~i~~~~~g~l~Dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~   81 (421)
                      ++..+++++.|+++||+|||+.+..+.++..++.+...++++++.+++.|++.|++.+...+...+++.|++|+|+|++.
T Consensus        45 ~~~~~~~~~~g~~~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~  124 (352)
T cd06174          45 LGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLAFASSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRA  124 (352)
T ss_pred             HHHHHHHHhHHHHHHHhCCchhhHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHcccccccHhHHHHHHHhCCccchhhh
Confidence            45678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhhHHHhHHhhhhcchhHHHHHHHHHHHHHHHHHHHhcccccccccCCccccchhhhhhcccccccccC
Q 014628           82 LSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNL  161 (421)
Q Consensus        82 ~~~~~~~~~~G~~~g~~~~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (421)
                      +++.+....+|..++|.+++.+.+..+||+.+++.+++.++..+...+. |                             
T Consensus       125 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-----------------------------  174 (352)
T cd06174         125 LGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAILGLLLALLLLFL-L-----------------------------  174 (352)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH-H-----------------------------
Confidence            9999999999999999999999999899999999988776665554332 1                             


Q ss_pred             CcccccccchhhhhhhccccchhhhhhhhhhhhhhhHHhhcchhHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhCCccch
Q 014628          162 NDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNAD  241 (421)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (421)
                                                                |.++...+..++..........+.|.+.++..+.+...
T Consensus       175 ------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  212 (352)
T cd06174         175 ------------------------------------------RLLLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAE  212 (352)
T ss_pred             ------------------------------------------HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHH
Confidence                                                      33445556667777778888889999998876766544


Q ss_pred             h-HHHhhhhHHHHHHhhhhhHHHhhhccccchhhH-HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhccCchh
Q 014628          242 M-MFGGVTIVCGIVGTISGGFILDQMGATISNAFK-LLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVN  319 (421)
Q Consensus       242 ~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (421)
                      . .......++..++.++.+++.||+++|     + .+..+..+..+........++.+...+...+.+.+.+...+...
T Consensus       213 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-----~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  287 (352)
T cd06174         213 AGLLLSLFGLGGILGALLGGLLSDRLGRR-----RLLLLIGLLLAALGLLLLALAPSLALLLVALLLLGFGLGFAFPALL  287 (352)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----hHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhccchhHH
Confidence            4 445677788999999999999999998     6 66666666666666666566666677777888888888889999


Q ss_pred             hhhhcccCCchhhHHHHHHHHHHHhhcccCcchhHHHhhhccccchhhhHHHHHHHHHHHHHH
Q 014628          320 YVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFFLAAGIW  382 (421)
Q Consensus       320 ~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~  382 (421)
                      ....+..|+++|++..|+.+...+. +..++|.+.+.+.|..+ +...+.+.+.+.+++.+..
T Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~i~g~l~~~~~-~~~~~~~~~~~~~i~~i~~  348 (352)
T cd06174         288 TLASELAPPEARGTASGLFNTFGSL-GGALGPLLAGLLLDTGG-YGGVFLILAALALLAALLL  348 (352)
T ss_pred             HHHHhhcCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcccC-cchHHHHHHHHHHHHHHHh
Confidence            9999999999999999999766666 88999999999998655 6677777776665555443

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=99.97  E-value=2.4e-29  Score=230.12  Aligned_cols=372  Identities=14%  Similarity=0.120  Sum_probs=274.9

Q ss_pred             cchhhHHHHhhhhcCCchHHHHHHHHHHHHHhhhhhhhhHHHHHH-HHHHhhhhhhhhccchhhhhhccCCCCCchhHHH
Q 014628            5 LVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAI-CRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLS   83 (421)
Q Consensus         5 ~i~~~~~g~l~Dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~   83 (421)
                      .+..|+.+.+.||+|.|.+.+.|.++.+++.++.++++++|++++ .-++.|+|.|..+.....++..||++| |+.+.|
T Consensus        95 ~~~gpl~s~l~~rfg~R~v~i~G~~v~~~g~~lssF~~~i~~l~lt~gvi~G~G~~~~~~paiviv~~YF~kk-R~lA~G  173 (509)
T KOG2504|consen   95 LLAGPLVSALCNRFGCRTVMIAGGLVAALGLLLSSFATSLWQLYLTFGVIGGLGLGLIYLPAVVILGTYFEKK-RALATG  173 (509)
T ss_pred             HHhccHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhccchhhhcchhhhhhhHhHHH-HHHHHh
Confidence            456889999999999999999999999999999999999999887 678899999999999999999888765 999999


Q ss_pred             HHHHHHHHHhhhHHHhHHhhhhcchhHHHHHHHHHHHHHHHHHHHhcccccccccCCccccchhhhhhcccccccccC--
Q 014628           84 MFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNL--  161 (421)
Q Consensus        84 ~~~~~~~~G~~~g~~~~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  161 (421)
                      +...+.++|.++-|.+...+.+.+|||+.+++.+.+.+-..+......|...+..++ +.++...   .....+....  
T Consensus       174 ia~~GsG~G~~~~~~l~~~l~~~~G~r~~~l~~~~~~l~~~~~~~~~rp~~~~~~~~-~~~~~~~---~~~~~~~~~~~~  249 (509)
T KOG2504|consen  174 IAVSGTGVGTVVFPPLLKYLLSKYGWRGALLIFGGISLNVLVAGALLRPLSPPKKPN-EEKDLRN---SAASVESTPKPV  249 (509)
T ss_pred             hhhccCCcceeeHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCCCCcCCCch-hhhhhcc---cccccccccccc
Confidence            999999999999999999999999999999999999887777777777754433222 0000000   0000000000  


Q ss_pred             --C-cccccccch---hhhhhhccccchhhhhhhhhhhh-hhhHHhhcchhHHHHHHHHHHHHHHHHHHHHHhhHHHHHh
Q 014628          162 --N-DHVSEDISD---QASERSIKSIGESRFLNQLSQFS-QDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNI  234 (421)
Q Consensus       162 --~-~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (421)
                        . .+.......   .......+.+.+... ...+... .--.++++++.++...+...+....+.....++|.|..+.
T Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~~ll~~~~fl~~~~~~~~~~~g~~~p~~~l~~~~~~~  328 (509)
T KOG2504|consen  250 ELRISERDSGLKKLSLSNLATLKRGPDKWRN-SPLQAFLSMLDLSLLKDPKFLLLALSNLFAYLGFNVPFVYLPSYAKSL  328 (509)
T ss_pred             ccccccCCCCCCcccccchhhhhhCCccccc-cchhhhhhhhhHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence              0 000000000   000000000000000 0000000 1124678999999999999999999999999999999965


Q ss_pred             hCCccchhHHHhhhhHHHHHHhhhhhHHHhhhccccchhhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhc
Q 014628          235 YHMSNADMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVFAT  314 (421)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (421)
                      +..+.......++.++..++++++.|++.|+...++.   .....+.+..++..+.....++.+.++....+.+++.+..
T Consensus       329 g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~~~~~~---~~~~~~ll~~gl~~~~~p~~~~~~~l~~~~~~fG~~~g~~  405 (509)
T KOG2504|consen  329 GLSSNDAAFLLSIIGVSDIIGRIILGLLADKPGIRAL---VLFLLTLLIAGLARLFLPFATTYVGLIVFSILFGFCVGSF  405 (509)
T ss_pred             CCChhhhHHHHHHHHHhhhhhhhhhhhhcCccccchH---HHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence            4444445566688889999999999999999884321   4455666666666666666777777777888888888877


Q ss_pred             cCchhhhhhcccCCchhhHHHHHHHHHHHhhcccCcchhHHHhhhccccchhhhHHHHHHHHHHHHHHHHhh
Q 014628          315 QAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFFLAAGIWFVGI  386 (421)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  386 (421)
                      ......++.+.++.++-+.+.|+...+... +..+||++.|++.|..++|...|++++.+.+++..+++...
T Consensus       406 ~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi-~~l~gpPiag~~~d~tg~Y~~~f~~~g~~~~~s~~~~~~~~  476 (509)
T KOG2504|consen  406 SSLTPVILVDLVGLEKLSNAYGLLLLFQGI-GALVGPPIAGLLYDITGNYDHAFYFCGLCFLLSAVLLLILR  476 (509)
T ss_pred             HHHHHHHHHHHcChhhcchHHHHHHHHhHH-HHHcCcccceeeeeccCCeeeehhhcChHHHHHHHHHHHhH
Confidence            777777899999999999999999555555 99999999999999999999999999999988887777655

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.97  E-value=2.6e-28  Score=221.77  Aligned_cols=320  Identities=9%  Similarity=0.065  Sum_probs=208.0

Q ss_pred             cccchhhHHHHhhhhcCCchHH-HHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhhhhhhhccchhhhhhccCCCCCc--h
Q 014628            3 GLLVASPIFASLAKSHNPFRLI-GVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQK--T   79 (421)
Q Consensus         3 g~~i~~~~~g~l~Dr~Grr~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r--~   79 (421)
                      +++++.+++++ +||+||||.+ ..+.++.+++..+.+++++++.+++.+.+.|...+...|....++.|+.++++|  +
T Consensus        64 ~~~~~~~~~~~-~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  142 (393)
T PRK15011         64 GILVSQFLAGR-SDKRGDRKSLIVFCCLLGVLACTLFAWNRNYFVLLFVGVFLSSFGSTANPQMFALAREHADKTGREAV  142 (393)
T ss_pred             HHHHHHHHHHH-HhcccchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhccchHH
Confidence            34455555555 9999999874 566677678888888999999887766655555556788888888888876655  3


Q ss_pred             hHHHHHHHHHHHHhhhHHHhHHhhhhcchhHHHHHHHHHHHHHHHHHHHhcccccccccCCccccchhhhhhcccccccc
Q 014628           80 AWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEAS  159 (421)
Q Consensus        80 ~~~~~~~~~~~~G~~~g~~~~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (421)
                      ...++.+.+.++|.++||++++.+.+++|||..|++.++..++..+..++..||.++.++  ++++..            
T Consensus       143 ~~~~~~~~~~~lg~~~g~~i~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~------------  208 (393)
T PRK15011        143 MFSSFLRAQVSLAWVIGPPLAYALAMGFSFTVMYLSAAVAFIVCGVMVWLFLPSMRKELP--LATGTL------------  208 (393)
T ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHhhcCccCCCCc--cccccc------------
Confidence            455788999999999999999999999999999999998887777776666676422110  000000            


Q ss_pred             cCCcccccccchhhhhhhccccchhhhhhhhhhhhhhhHHhhcchhHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhCCcc
Q 014628          160 NLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSN  239 (421)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (421)
                                                         +..++  +++..+...............+..+.|.|+++..+.++
T Consensus       209 -----------------------------------~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~~  251 (393)
T PRK15011        209 -----------------------------------EAPRR--NRRDTLLLFVICTLMWGTNSLYIINMPLFIINELHLPE  251 (393)
T ss_pred             -----------------------------------ccccc--ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCH
Confidence                                               00000  01111222222233334455566789999988888775


Q ss_pred             chh-HHHhhhhHHHHHHhhhhhHHHhhhccccchhhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhccCch
Q 014628          240 ADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPV  318 (421)
Q Consensus       240 ~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (421)
                      ... .+.....+..+++.++.|+++||+++|     +.+..........+......++.+..+....+.+++.+...+..
T Consensus       252 ~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~g~~~~~~  326 (393)
T PRK15011        252 KLAGVMMGTAAGLEIPTMLIAGYFAKRLGKR-----FLMRVAAVAGVCFYAGMLMAHSPAILLGLQLLNAIYIGILGGIG  326 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhChH-----HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            444 333444566778899999999999998     54444333333333333333444444444444444444444444


Q ss_pred             hhhhhcccCCchhhHHHHHHHHHHHhhcccCcchhHHHhhhccccchhhhHHHHHHHHHHHHHH
Q 014628          319 NYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFFLAAGIW  382 (421)
Q Consensus       319 ~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~  382 (421)
                      ..+..+..| +++++++++.+...+. |..++|.+.|.+.|..| +...+.....+.+++.+..
T Consensus       327 ~~~~~~~~p-~~~g~~~~~~~~~~~l-g~~~g~~l~G~i~~~~g-~~~~~~~~~~~~~~~~~~~  387 (393)
T PRK15011        327 MLYFQDLMP-GQAGSATTLYTNTSRV-GWIIAGSLAGIVAEIWN-YHAVFWFALVMIIATLFCL  387 (393)
T ss_pred             HHHHHHhCC-CCcchHHHHHHHHHHH-HHHHHHHHHHHHHHHhh-hHHHHHHHHHHHHHHHHHH
Confidence            555667665 5699999998776665 88999999999999865 6666666555554444333

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=99.97  E-value=2.9e-28  Score=221.27  Aligned_cols=314  Identities=15%  Similarity=0.136  Sum_probs=232.1

Q ss_pred             ccccchhhHHHHhhhhcCCchHHHHHHHHHHHHHhhhhh---hhhHHHHHHHHHHhhhhhhhhccchhhhhhccCCCCCc
Q 014628            2 VGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGS---SFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQK   78 (421)
Q Consensus         2 lg~~i~~~~~g~l~Dr~Grr~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r   78 (421)
                      +++.+++++.|++.||+|||+++..+.++++++.+++..   .++++.+++.|++.|+|.|...+....++.+..|+++|
T Consensus        49 ~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~~l~~~~~~~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~  128 (410)
T TIGR00885        49 GGYFIMAIPAAIFMKKLSYKAGILLGLFLYALGAFLFWPAAEIMNYTLFLVGLFILTAGLGFLETAANPYILVMGPESTA  128 (410)
T ss_pred             HHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHH
Confidence            578899999999999999999999999999999988654   46899999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHhhhHHHhHHhhhh--------------------------cchhHHHHHHHHHHHHHHHHHHHhc-c
Q 014628           79 TAWLSMFYMCIPTGVALGYVYGGVVGS--------------------------HLNWRYAFWGEAILMLPFAVLAFVI-K  131 (421)
Q Consensus        79 ~~~~~~~~~~~~~G~~~g~~~~~~l~~--------------------------~~~wr~~f~~~~~~~~~~~~~~~~~-~  131 (421)
                      ++.+++.+...++|..++|.+++.+..                          ..+||++|++.+++.++..++..+. .
T Consensus       129 ~~~~~~~~~~~~lG~~~g~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~~~~~~~  208 (410)
T TIGR00885       129 TRRLNLAQSFNPFGSIIGMVVAQQLILSNLPHQSQDVLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVALLIMLTKM  208 (410)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            999999999999999999999887742                          2469999999988776655444322 1


Q ss_pred             cccccccCCccccchhhhhhcccccccccCCcccccccchhhhhhhccccchhhhhhhhhhhhhhhHHhhcchhHHHHHH
Q 014628          132 PLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVL  211 (421)
Q Consensus       132 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (421)
                      |+.++    +++++ .                                            +..++.++++++|.++...+
T Consensus       209 p~~~~----~~~~~-~--------------------------------------------~~~~~~~~~~~~~~~~~~~l  239 (410)
T TIGR00885       209 PALNH----SDAKQ-I--------------------------------------------SFSASLSRLARIRHYREGVI  239 (410)
T ss_pred             CCCCc----ccccc-c--------------------------------------------cchhhHHHHHhChhHHHHHH
Confidence            22100    00000 0                                            00012345678888888777


Q ss_pred             HHHHHHHHHHHHHHHhhHHHHHhh-CCccc-hhHHHhhhhHHHHHHhhhhhHHHhhhccccchhhHHHHHHHHHHHHHHH
Q 014628          212 GYIAYNFVIGAYSYWGPKAGYNIY-HMSNA-DMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCL  289 (421)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~  289 (421)
                      ..+++........++++.|.++.. +.+.. ...+......+..+|+++++++.||+++|     +.+......+.+.++
T Consensus       240 ~~f~yvg~e~~~~s~l~~y~~~~~~~~~~~~a~~~~~~~~~~~~vGR~~~~~l~~r~~~~-----~~l~i~~~~~~~~~l  314 (410)
T TIGR00885       240 AQFFYVGVQIMCWTFIIQYAVRLIPGMTAGFAANYNIGAMVIFFISRFIGTWLISYLAAH-----KVLMAYAIIGMALCL  314 (410)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHH-----HHHHHHHHHHHHHHH
Confidence            777777777777888999987643 22221 12234445577789999999999999887     777666666666666


Q ss_pred             HHHhhhhhHHHHHHHHHHHHHHHhccCchhhhhhcccCCchhhHHHHHHHHHHHhhcccCcchhHHHhhhcc-----ccc
Q 014628          290 TAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHV-----NNW  364 (421)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~-----g~~  364 (421)
                      +....++.. ....+.+.+++.+..+|..++...+..+++.+..+.++. +.  .+|+.+.|++.|++.|..     |++
T Consensus       315 l~~~~~~~~-~~~~l~~~glf~s~~fp~i~sl~~~~~g~~~~~~s~~l~-~~--~~Gga~~p~l~G~~~d~~~~~~~~~~  390 (410)
T TIGR00885       315 GSIFAGGHV-GLYCLTLCSAFMSLMFPTIYGIALKGLGQDTKYGAAGLV-MA--IIGGGIVPPLQGFIIDMKEIAAAPAV  390 (410)
T ss_pred             HHHHcCChH-HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHH-HH--HhccchHHHHHHHHHHHhcccccCcc
Confidence            665554433 345666677888888899999999999876654455554 33  258899999999999954     345


Q ss_pred             hhhhHHHHH
Q 014628          365 RKTTLALTS  373 (421)
Q Consensus       365 ~~~~~~~~~  373 (421)
                      +..|++-..
T Consensus       391 ~~~~~~~~~  399 (410)
T TIGR00885       391 NTSFILPLL  399 (410)
T ss_pred             chHHHHHHH
Confidence            556665433

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>PRK11043 putative transporter; Provisional

Probab=99.97  E-value=3.4e-28  Score=222.14  Aligned_cols=303  Identities=19%  Similarity=0.139  Sum_probs=216.4

Q ss_pred             ccccchhhHHHHhhhhcCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhhhhhhhccchhhhhhccCCCCCchhH
Q 014628            2 VGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAW   81 (421)
Q Consensus         2 lg~~i~~~~~g~l~Dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~   81 (421)
                      +++.++++++|+++||+|||+++..+.++..++.+++.++++++.+++.|+++|++.+...+...+++.|++|++++++.
T Consensus        52 ~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~  131 (401)
T PRK11043         52 AGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLWVESAAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQKANRV  131 (401)
T ss_pred             HHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHHHHHH
Confidence            46788999999999999999999999999999999999999999999999999999988888888999999999999999


Q ss_pred             HHHHHHHHHHHhhhHHHhHHhhhhcchhHHHHHHHHHHHHHHHHHHHhcccccccccCCccccchhhhhhcccccccccC
Q 014628           82 LSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNL  161 (421)
Q Consensus        82 ~~~~~~~~~~G~~~g~~~~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (421)
                      .+.......+|..++|.+++.+.++.|||+.|++.+++.++..++.++..|+ +++    ++.+..              
T Consensus       132 ~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~----~~~~~~--------------  192 (401)
T PRK11043        132 FATIMPLVALSPALAPLLGAWLLNHFGWQAIFATLFAITLLLILPTLRLKPS-KKA----RKQSQD--------------  192 (401)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHcCCC-CCc----cccchH--------------
Confidence            9999999999999999999999999999999999988877766655544322 110    000000              


Q ss_pred             CcccccccchhhhhhhccccchhhhhhhhhhhhhhhHHhhcchhHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhCCccch
Q 014628          162 NDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNAD  241 (421)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (421)
                                                      ..++++++++|.++...+...+....+..+..+.|.+.++ .+.++..
T Consensus       193 --------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~g~s~~~  239 (401)
T PRK11043        193 --------------------------------ALTFKQLLKSKTYLGNVLIFAACSAAFFAWLTGSPFILEQ-MGYSPAD  239 (401)
T ss_pred             --------------------------------HHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHhHHHHHH-cCCCHHH
Confidence                                            1235566677777765555555555566677788888766 5666544


Q ss_pred             hHH-HhhhhHHHHHHhhhhhHHHhhhccccchhhHHHHHHHHHHHHHHHHHHh--hhhhHHHHHHHHHHHHHHHhccCch
Q 014628          242 MMF-GGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFC--LSSLYGFLALFTVGELLVFATQAPV  318 (421)
Q Consensus       242 ~~~-~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~  318 (421)
                      ..+ .....++.+++.+..+++.||+++++..  +.......++.........  .++.+.......+.+++.+..++..
T Consensus       240 ~g~~~~~~~~~~~~g~~~~~~l~~r~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (401)
T PRK11043        240 IGLSYVPQTIAFLVGGYGCRAALQKWGGEQLL--PWLLVLFAVSVIAIWLASLLSHPSLVPLLIPFCVMAAANGAIYPIV  317 (401)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHH--HHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHH
Confidence            433 2444567788888899999999876211  1111112222221111111  2233334444555666666666666


Q ss_pred             hhhhhcccCCchhhHHHHHHHHHHHhhcccCcchhHHHhhhc
Q 014628          319 NYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDH  360 (421)
Q Consensus       319 ~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~  360 (421)
                      .....+.. +++++++.|+.+..... ++..++.+.|.+.|.
T Consensus       318 ~~~~~~~~-~~~~g~~~g~~~~~~~~-~~~~~~~~~g~l~~~  357 (401)
T PRK11043        318 VAQALRPF-PQATGKAAALQNTLQLG-LCFLASLLVSALIST  357 (401)
T ss_pred             HHHHhhhC-cccChHHHHHHHHHHHH-HHHHHHHHHHHccCC
Confidence            66666665 46799999999766555 666778888888774

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=99.97  E-value=8.2e-29  Score=254.19  Aligned_cols=323  Identities=13%  Similarity=-0.028  Sum_probs=230.5

Q ss_pred             ccccchhhHHHHhhhhcCCchHHHH---HHHHHHHHHhhhhhhhhHHHHHHHHHHhhhhhhhhccchhhhhhccCCCCCc
Q 014628            2 VGLLVASPIFASLAKSHNPFRLIGV---GLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQK   78 (421)
Q Consensus         2 lg~~i~~~~~g~l~Dr~Grr~~~~~---~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r   78 (421)
                      ++++++++++|+++||+|||+++..   +.+...+..+.+...++++.++++|+++|++.+...|+..+++.|++++++|
T Consensus        63 l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~l~gi~~a~~~p~~~a~l~~~~~~~~~  142 (1140)
T PRK06814         63 LPFFIFSALAGQLADKYDKAKLAKILKFAEIGIAALAIYGFHLNSVPLLFAALFLMGIHSALFGPIKYSILPDHLNKDEL  142 (1140)
T ss_pred             HHHHHHhhhHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhchHHHHhhHhhcCcccc
Confidence            4567889999999999999997533   3333333333344458999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHhhhHHHhHHhhhhcchhHHHHHHHHHHHHHHHHHHHhcccccccccCCccccchhhhhhccccccc
Q 014628           79 TAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEA  158 (421)
Q Consensus        79 ~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (421)
                      ++++++.+++.++|.++||++++++.+..+|++.|...++..++. ++..+..|+...... ..+.+.            
T Consensus       143 ~~a~~~~~~~~~ig~~igp~l~g~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~------------  208 (1140)
T PRK06814        143 LGANALVEAGTFIAILLGTIIGGLATISGNFVILVALLMGIAVLG-WLASLFIPKTGNAAP-DLKIDR------------  208 (1140)
T ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH-HHHHhhCCCCCCCCC-CCeecc------------
Confidence            999999999999999999999999999999999995554444433 333344444321100 000000            


Q ss_pred             ccCCcccccccchhhhhhhccccchhhhhhhhhhhhhhhHHhhcchhHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhCCc
Q 014628          159 SNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMS  238 (421)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (421)
                                                   ...++....++.+.+++.++...+..++..+....+..++|.|+++.++.+
T Consensus       209 -----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~  259 (1140)
T PRK06814        209 -----------------------------NIIRSTITLLKYAKADKRIWLAILGISWFWLVGAVVLSQLPLLAKETLGGD  259 (1140)
T ss_pred             -----------------------------chHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCc
Confidence                                         000112245677888999999888888877778888889999999988877


Q ss_pred             cchh-HHHhhhhHHHHHHhhhhhHHHhhhccccchhhHHHHHHHHHHHHHHHHHHh--------------------hhhh
Q 014628          239 NADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFC--------------------LSSL  297 (421)
Q Consensus       239 ~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~  297 (421)
                      .... .+.+...++.+++.++.+++.|+..++     +.+..+.++..+..+.+..                    ..+.
T Consensus       260 ~~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~-----~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  334 (1140)
T PRK06814        260 ENVATLFLAVFSVGVAVGSFLASKLSEGRITL-----LYVPIGALLMGLFGLDLAFASSSVPAEPAQLKSILVFLSKRHG  334 (1140)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhCCceee-----eeehHHHHHHHHHHHHHHhcccccccccccccchhhhhccccc
Confidence            6544 344677788899999999999877655     2222222222111111111                    1444


Q ss_pred             HHHHHHHHHHHHHHHhccCchhhhhhcccCCchhhHHHHHHHHHHHhhcccCcchhHHHhhhccccchhhhHHHHH
Q 014628          298 YGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTS  373 (421)
Q Consensus       298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~  373 (421)
                      +..++..++.+++.+...++..+++++..|++.+|+++|+.+..... +..+++.+.+.+.+...++...+++.+.
T Consensus       335 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~-~~~ig~~~~g~l~~~~~~~~~~~~~~~~  409 (1140)
T PRK06814        335 WRILIDLFGLAAAGGLYIVPLFAALQAWANPAHRARVIAANNVLNAA-FMVAGTIILALLQALGFSIPWIILFIAL  409 (1140)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHHHH-HHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence            55556666777777788888899999999999999999999766555 8888998989888654444444444333

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=99.97  E-value=6.7e-28  Score=221.78  Aligned_cols=328  Identities=17%  Similarity=0.143  Sum_probs=250.2

Q ss_pred             cccchhhHHHHhhhhcCCchHHHHHHHHHHHHHhhhhhh-----hhHHHHHHHHHHhhhhhhhhccchhhhhhccCCCCC
Q 014628            3 GLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSS-----FDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQ   77 (421)
Q Consensus         3 g~~i~~~~~g~l~Dr~Grr~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~   77 (421)
                      ...+.++++|.++||++|||+++.+.++..+..+..++.     .+.+.+++.-++.|++.+...|...+++.|.+|+++
T Consensus        57 P~~Llsl~aG~laDr~drrrili~~~~~~~~~~~~L~~l~~~~~~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~  136 (524)
T PF05977_consen   57 PILLLSLFAGALADRFDRRRILILSQLLRALVALLLAVLAFFGLLSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKED  136 (524)
T ss_pred             HHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhh
Confidence            356788999999999999999999988877665554432     368889999999999999999999999999999999


Q ss_pred             chhHHHHHHHHHHHHhhhHHHhHHhhhhcchhHHHHHHHHHHHHHHHHHHHhcccccccccCCccccchhhhhhcccccc
Q 014628           78 KTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSE  157 (421)
Q Consensus        78 r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~  157 (421)
                      ...++++.+...++..++||.++|.+....|-.+.|.+.++..++...+.....++..+.    +..++           
T Consensus       137 L~~A~al~s~~~niar~iGPalgG~Lva~~G~~~~f~inalsfl~~i~~l~~~~~~~~~~----~~~~e-----------  201 (524)
T PF05977_consen  137 LPAANALNSISFNIARIIGPALGGILVAFFGAAAAFLINALSFLISILALLRWKPPPPPS----SLPRE-----------  201 (524)
T ss_pred             HHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccc----ccchh-----------
Confidence            999999999999999999999999999989999999999876655544443332221100    00000           


Q ss_pred             cccCCcccccccchhhhhhhccccchhhhhhhhhhhhhhhHHhhcchhHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhCC
Q 014628          158 ASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHM  237 (421)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (421)
                                                    ...++..+.++.+.++|.+....+..++.++....+...+|.+.++..+.
T Consensus       202 ------------------------------~~~~~l~~G~ryv~~~~~l~~~l~~~~~~~l~~~a~~aLlPl~a~~~l~~  251 (524)
T PF05977_consen  202 ------------------------------RFFSALREGLRYVRSSPPLRSVLLRSFLFNLFASAVWALLPLFARDVLGG  251 (524)
T ss_pred             ------------------------------hhhhhHHHHHHHHhcchHHHHHHHHHHHHHHhhhHHHHhhhHHHHHHhCC
Confidence                                          11223345666777778777766656666666666677789999888887


Q ss_pred             ccchhH-HHhhhhHHHHHHhhhhhHHHhhhccccchhhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhccC
Q 014628          238 SNADMM-FGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQA  316 (421)
Q Consensus       238 ~~~~~~-~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (421)
                      ++.... +.+..+++.++|.++.+++.+|++++     +.+..+.+..+...+.+...++.+...+.+++.|++......
T Consensus       252 ~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~-----~lv~~~~~~~a~~~~~lal~~~~~~~~~~l~l~G~~~~~~~~  326 (524)
T PF05977_consen  252 GASGYGLLLAAFGVGAILGALLLPRLRRRLSSR-----RLVLLASLLFALALLLLALSPSFWLALIALFLAGAAWIIANS  326 (524)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcc-----hhhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHH
Confidence            765553 34677788888888888888877766     666666666666666667777888777788888888888888


Q ss_pred             chhhhhhcccCCchhhHHHHHHHHHHHhhcccCcchhHHHhhhccccchhhhHHHHHHHHHHHHHH
Q 014628          317 PVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFFLAAGIW  382 (421)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~  382 (421)
                      ...+..++..|++.||++++++++.... +..+|..+.|.+.+..| ....+.+.++..+++.++.
T Consensus       327 ~~~t~~Q~~~P~~~~GRv~si~~~~~~g-~~~lGsll~G~la~~~g-~~~al~~a~~~lll~~~~~  390 (524)
T PF05977_consen  327 SLNTLVQLSVPDWVRGRVFSIYQMVFFG-GMPLGSLLWGFLADHFG-VRTALLIAGAALLLSALIA  390 (524)
T ss_pred             HHHHHHHHhCCHHHHhHHHHHHHHHHHH-HHHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHHH
Confidence            8889999999999999999999766666 88889999999999877 4455555554444444433

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=99.97  E-value=5.3e-28  Score=220.34  Aligned_cols=303  Identities=13%  Similarity=0.060  Sum_probs=218.8

Q ss_pred             ccccchhhHHHHhhhhcCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhhhhhhhccchhhhhhccCCCCCchhH
Q 014628            2 VGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAW   81 (421)
Q Consensus         2 lg~~i~~~~~g~l~Dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~   81 (421)
                      +++.++++++|+++||+|||+++..+.++..++.+++.++++++.+++.|++.|++.+...+....+..|.+++++++++
T Consensus        54 ~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (394)
T PRK11652         54 LTYGLSQLFYGPLSDRVGRRPVILVGMSIFILGTLVALFAHSLTVLIAASAIQGLGTGVGGVMARTLPRDLYEGTQLRHA  133 (394)
T ss_pred             HHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHHHHHH
Confidence            46788999999999999999999999999999999999999999999999999999998888888899999999999999


Q ss_pred             HHHHHHHHHHHhhhHHHhHHhhhhcchhHHHHHHHHHHHHHHHHHHHhcccccccccCCccccchhhhhhcccccccccC
Q 014628           82 LSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNL  161 (421)
Q Consensus        82 ~~~~~~~~~~G~~~g~~~~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (421)
                      ++....+..+|..++|.+++.+.+..|||+.|++.++..++..++..+..||+++..     ++..              
T Consensus       134 ~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~--------------  194 (394)
T PRK11652        134 NSLLNMGILVSPLLAPLIGGLLTTLFGWRACYLFLLLLGAGVTFSMARWMPETRPAD-----ARRT--------------  194 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHhCCccCccc-----cchh--------------
Confidence            999999999999999999999999889999999998877666655555556532110     0000              


Q ss_pred             CcccccccchhhhhhhccccchhhhhhhhhhhhhhhHHhhcchhHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhCCccch
Q 014628          162 NDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNAD  241 (421)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (421)
                                                    +..++++..+++|.++...+..+........+..+.+.++++..+.++..
T Consensus       195 ------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  244 (394)
T PRK11652        195 ------------------------------RVLASYRTLLSNRRFNCYLLMLIGTLAGIAVFEACSGVLMGAVLGLSSMT  244 (394)
T ss_pred             ------------------------------HHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHhChHHHHHHcCCCHHH
Confidence                                          01134556677887776655555555555555667788888877777544


Q ss_pred             hH-HHhhhhHHHHHHhhhhhHHHhhhccccchhhHHHH-HHHHHHHHHHHHHHh--hhhhHHHHHHHHHHHHHHHhccCc
Q 014628          242 MM-FGGVTIVCGIVGTISGGFILDQMGATISNAFKLLS-AATFLGAISCLTAFC--LSSLYGFLALFTVGELLVFATQAP  317 (421)
Q Consensus       242 ~~-~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~  317 (421)
                      .. +.....++.+++.++.+++.||.+++     .... ...............  ..+.+.......+.+++.+...+.
T Consensus       245 ~~~~~~~~~~~~~~g~~~~~~l~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  319 (394)
T PRK11652        245 VSILFILPIPAAFFGAWFAGRPNKRFSTL-----MWQSVICCLLAGLLMWIPGWFGVMNVWTLLVPAALFFFGAGMLFPL  319 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHH
Confidence            32 23444566667777777777777632     2221 222222222221111  123344455556667777777788


Q ss_pred             hhhhhhcccCCchhhHHHHHHHHHHHhhcccCcchhHHHhhhc
Q 014628          318 VNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDH  360 (421)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~  360 (421)
                      ......+..| ++++++.++.+..... |..+++.+.+.+.+.
T Consensus       320 ~~~~~~~~~~-~~~g~~~~~~~~~~~l-g~~~~~~~~~~~~~~  360 (394)
T PRK11652        320 ATSGAMEPFP-YLAGTAGALLGGLQNI-GSGLAALLSAMLPQT  360 (394)
T ss_pred             HHHHHHhhcc-ccchHHHHHHHHHHHH-HHHHHHHHHHHccCC
Confidence            8888888775 6789999999766655 888888888877654

>PRK10054 putative transporter; Provisional

Probab=99.97  E-value=2.3e-28  Score=221.63  Aligned_cols=312  Identities=16%  Similarity=0.090  Sum_probs=222.2

Q ss_pred             ccccchhhHHHHhhhhcCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhhhhhhhccchhhhhhccCCCCCchhH
Q 014628            2 VGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAW   81 (421)
Q Consensus         2 lg~~i~~~~~g~l~Dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~   81 (421)
                      +++++++++.|+++||+|||++++++.++..++.++.+++++++.++++|++.|.+.+...+...++..|.+|+++|+++
T Consensus        54 ~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (395)
T PRK10054         54 TIGVVFSLGFGILADKFDKKRYMLLAITAFASGFIAIPLVNNVTLVVLFFALINCAYSVFSTVLKAWFADNLSSTSKTKI  133 (395)
T ss_pred             HHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhHHHHH
Confidence            35677899999999999999999999999999999999999999999999999988888888899999999999999999


Q ss_pred             HHHHHHHHHHHhhhHHHhHHhhhhcchhHHHHHHHHHHHHHHHHHHHhcccccccccCCccccchhhhhhcccccccccC
Q 014628           82 LSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNL  161 (421)
Q Consensus        82 ~~~~~~~~~~G~~~g~~~~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (421)
                      +++.....++|.+++|.+++.+.+ .+|+.+|++.++..++..++..+..|++.+.    ++++..              
T Consensus       134 ~g~~~~~~~lg~~igp~l~~~l~~-~g~~~~f~~~~~~~~i~~i~~~~~~~~~~~~----~~~~~~--------------  194 (395)
T PRK10054        134 FSLNYTMLNIGWTVGPPLGTLLVM-QSINLPFWLAAICSAFPLVFIQIWVQRSEKA----IATETG--------------  194 (395)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH-hccCcHHHHHHHHHHHHHHHHHHHHhccccc----cccchh--------------
Confidence            999999999999999999999875 6999999998887766655555544543211    000000              


Q ss_pred             CcccccccchhhhhhhccccchhhhhhhhhhhhhhhHHhhcchhHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhCCc--c
Q 014628          162 NDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMS--N  239 (421)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~  239 (421)
                                                +     ..+.++.+++|.++...+..++.......+..+.+.|..+..+.+  .
T Consensus       195 --------------------------~-----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (395)
T PRK10054        195 --------------------------S-----VWSPSVLLQDKALLWFTCSGFLASFVSGAFASCISQYVMVVADSDFAE  243 (395)
T ss_pred             --------------------------h-----hhhhhhhccCceehHHHHHHHHHHHHHHHhhhhHHHHHHHhcccchHH
Confidence                                      0     011245667888877777666666666556566677665443322  2


Q ss_pred             chh-HHHhhhhHHHHHHhhhhhHHHhhhccccchhhHHHHHHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHHHHhccCc
Q 014628          240 ADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFC-LSSLYGFLALFTVGELLVFATQAP  317 (421)
Q Consensus       240 ~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  317 (421)
                      ... .+.....+.........+++.||.++|     +.+..+..+.......... .++.+.+.+...+.+.+.....+.
T Consensus       244 ~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~-----~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~p~  318 (395)
T PRK10054        244 KVVAVVLPVNAAMVVSLQYSVGRRLNAANIR-----PLMTAGTLCFVIGLVGFIFSGNSLLLWGMSAAVFTVGEIIYAPG  318 (395)
T ss_pred             HHHHHHHHhhhhheeeehhHHHHHHccCCch-----hHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHhh
Confidence            222 222333344445556778888988877     5555554444444333332 244444555566666676666667


Q ss_pred             hhhhhhcccCCchhhHHHHHHHHHHHhhcccCcchhHHHhhhccccchhhhHHH
Q 014628          318 VNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLAL  371 (421)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~  371 (421)
                      ....+.+..|++.++++.+..+ ..+. |..+||.+.|.+.|+.| +...+.+.
T Consensus       319 ~~~~~~~~~p~~~~~~~~~~~~-~~~~-G~~~Gp~~~G~l~~~~g-~~~~~~~~  369 (395)
T PRK10054        319 EYMLIDHIAPPGMKASYFSAQS-LGWL-GAAINPLVSGVILTTLP-PWSLFVIL  369 (395)
T ss_pred             HHHHHHHhCCcccceehHhHHH-HHHH-HHHHHHHHHHHHHHHcC-hhhHHHHH
Confidence            7778888889999999988763 4444 88999999999999886 43444443

>TIGR00896 CynX cyanate transporter

Probab=99.97  E-value=6.4e-28  Score=216.62  Aligned_cols=305  Identities=14%  Similarity=0.048  Sum_probs=215.7

Q ss_pred             ccccchhhHHHHhhhhcCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhhhhhhhccchhhhhhccCCCCCchhH
Q 014628            2 VGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAW   81 (421)
Q Consensus         2 lg~~i~~~~~g~l~Dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~   81 (421)
                      +++.+++++.|+++||+|||+++.++.++..++.+.+ .+++++.+++.|++.|++.+...+....++.|++| ++|+++
T Consensus        46 ~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~g~~~~~~~~~~~~~~~~~-~~~~~~  123 (355)
T TIGR00896        46 LCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR-SAPGTALLFAGTALIGVGIAIINVLLPSLIKRDFP-QRVGLM  123 (355)
T ss_pred             HHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH-HhccHHHHHHHHHHHHHHHHHHhccchHHHHHhCc-chhhHH
Confidence            4678899999999999999999999999988888887 78899999999999999999888888889999986 579999


Q ss_pred             HHHHHHHHHHHhhhHHHhHHhhhhcc--hhHHHHHHHHHHHHHHHHHHHhcccccccccCCccccchhhhhhcccccccc
Q 014628           82 LSMFYMCIPTGVALGYVYGGVVGSHL--NWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEAS  159 (421)
Q Consensus        82 ~~~~~~~~~~G~~~g~~~~~~l~~~~--~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (421)
                      +++++.+.++|..+++.+++.+.++.  +||+.|...+++.++...   ...|+.++.   +++++..            
T Consensus       124 ~~~~~~~~~~g~~i~~~~~~~l~~~~~~~w~~~f~~~~~~~~~~~~---~~~~~~~~~---~~~~~~~------------  185 (355)
T TIGR00896       124 TGLYSMALMGGAALAAAATVPLAQHSGGHWQQALAWWALPALLALL---AWIPQVRRR---VAANQTT------------  185 (355)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH---HHhhhhccc---cCCCCCC------------
Confidence            99999999999999999998887764  399999887665433221   223432211   0000000            


Q ss_pred             cCCcccccccchhhhhhhccccchhhhhhhhhhhhhhhHHhhcchhHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhCCcc
Q 014628          160 NLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSN  239 (421)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (421)
                                         +              ....++.+++|.++...+..++....++....|+|.|+++ .+.+.
T Consensus       186 -------------------~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~-~g~~~  231 (355)
T TIGR00896       186 -------------------T--------------RLTPVRIWRSPLAWQVTVFFGLQSGLYYSLIGWLPAILIS-HGASA  231 (355)
T ss_pred             -------------------C--------------CCCCchhhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCH
Confidence                               0              0112345677877776666666667777888899999987 46665


Q ss_pred             chh-HHHhhhhHHHHHHhhhhhHHHhhhccccchhhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhccCch
Q 014628          240 ADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPV  318 (421)
Q Consensus       240 ~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (421)
                      ... ...+...++.+++.+..|++.||+++|+    ..+.....+.....+......+..... ...+.+++.+...+..
T Consensus       232 ~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~g~~~g~~~~~~  306 (355)
T TIGR00896       232 ATAGSLLALMQLAQAASALLIPALARRVKDQR----GIVAVLAVLQLVGLCGLLFAPMHGLWA-WALVLGLGQGGAFPLA  306 (355)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHhhhccch----HHHHHHHHHHHHHHHHHHHhhhhHHHH-HHHHHHHhhhhHhHHH
Confidence            443 4456778889999999999999995441    344444444433333333332222222 3445566666666655


Q ss_pred             hhhhhcccC-CchhhHHHHHHHHHHHhhcccCcchhHHHhhhccccchh
Q 014628          319 NYVCLHSVK-PSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRK  366 (421)
Q Consensus       319 ~~~~~~~~~-~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~  366 (421)
                      .....+..+ +++++...++.+...+. +..++|.+.|++.|+.|+|..
T Consensus       307 ~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~gp~~~G~l~~~~g~~~~  354 (355)
T TIGR00896       307 LTLIGLRSRQAAQAAALSAMAQSIGYL-LAALGPLFVGVLHDISGNWLM  354 (355)
T ss_pred             HHHHHHhccCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcccCC
Confidence            555555444 46778888988655555 778899999999999887643

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.97  E-value=6.4e-28  Score=218.36  Aligned_cols=316  Identities=12%  Similarity=0.004  Sum_probs=232.9

Q ss_pred             cccchhhHHHHhhhhcCCchHH----HHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhhhhhhhccchhhhhhccCCCCCc
Q 014628            3 GLLVASPIFASLAKSHNPFRLI----GVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQK   78 (421)
Q Consensus         3 g~~i~~~~~g~l~Dr~Grr~~~----~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r   78 (421)
                      +..++++++|+++||+|||+..    ..+..+..+  ..+..+++++.+++.|+++|.+.+...|...++..++  +++|
T Consensus        51 ~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~l~~~~~l~~~~~~~~~p~~~al~~~~--~~~~  126 (382)
T TIGR00902        51 ARFAGGLFFAPLIKDANHIIIALRLLALASAIFAA--AFSAGAHNAWLLFIAIGLFALFFSAGMPIGDALANTW--QKQF  126 (382)
T ss_pred             HHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH--HHHHhhhhHHHHHHHHHHHHHHHccchhHHHHHHHHH--HHHc
Confidence            4567889999999999985433    233222222  2445788999999999999999988888888887765  4678


Q ss_pred             hhHHHHHHHHHHHHhhhHHHhHHhhhhcchhHHHHHHHHHHHHHHHHHHHhcccccccccCCccccchhhhhhccccccc
Q 014628           79 TAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEA  158 (421)
Q Consensus        79 ~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (421)
                      +++++......++|.+++|++++.+.+++|||..|++.++... ..++.+...|+.++.    ++.+..   +       
T Consensus       127 ~~~~g~~~~~~slG~~~g~~l~g~l~~~~g~~~~f~~~~~~~~-~~~~~~~~~~~~~~~----~~~~~~---~-------  191 (382)
T TIGR00902       127 GLDYGKVRLIGSAAFIIGSALFGGLIGMFDEQNILAILTAGLA-FMLIGFLIKPTIPPK----DAIPED---E-------  191 (382)
T ss_pred             CCCccHHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHH-HHHHHHHcCCCCCCC----cccccc---c-------
Confidence            9999999999999999999999999999999999988765532 222333222221110    000000   0       


Q ss_pred             ccCCcccccccchhhhhhhccccchhhhhhhhhhhhhhhHHhhcchhHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhCCc
Q 014628          159 SNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMS  238 (421)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (421)
                                        .              +..++.++++|+|+++...+..++.......+..+.|.|+++ .+.+
T Consensus       192 ------------------~--------------~~~~~~~~~l~~~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~-~g~s  238 (382)
T TIGR00902       192 ------------------S--------------QGDSAFIALLKNPMNLRFLAAVCLIQGAHAAYYGFSAIYWQA-AGIS  238 (382)
T ss_pred             ------------------c--------------ccchhHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCC
Confidence                              0              001235577899999998888888888888888899999987 5666


Q ss_pred             cchh-HHHhhhhHHHHHHhhhhhHHHhhhccccchhhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhccCc
Q 014628          239 NADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQAP  317 (421)
Q Consensus       239 ~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (421)
                      +... ....+..+..+++.+..+++.||+++|     +.+..+.+............++.+..+....+.++..+...+.
T Consensus       239 ~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~-----~~l~~~~~~~~~~~~~~~~~~~~~~~~~~q~l~g~~~~~~~~~  313 (382)
T TIGR00902       239 ASATGLLWGIGVLAEIIIFAFSNKLFQNCSAR-----DLLLISAIACVGRWAIIGAIEAFPLIFLLQILHCGTFAVCHLA  313 (382)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHH-----HHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHH
Confidence            5444 333556677788888899999999988     7777777777777666666777777777888888888888888


Q ss_pred             hhhhhhcccCCchhhHHHHHHHHHHHhhcccCcchhHHHhhhccccchhhhHHHHHHHHHH
Q 014628          318 VNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFFLA  378 (421)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~  378 (421)
                      ...++.+. |++++++++++++.....+|..++|.+.|++.|+.| + ..+...+.+.+.+
T Consensus       314 ~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~g-~-~~~~~~~~~~~~~  371 (382)
T TIGR00902       314 AMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPTLG-A-GTFVFMAIIAAAA  371 (382)
T ss_pred             HHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-H-HHHHHHHHHHHHH
Confidence            88888887 888999999998755555589999999999999886 4 4566555555443

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>TIGR00805 oat sodium-independent organic anion transporter

Probab=99.97  E-value=7.4e-28  Score=228.33  Aligned_cols=336  Identities=20%  Similarity=0.308  Sum_probs=241.7

Q ss_pred             ccccchhhHHHHhhhhcCCchHHHHHHHHHHHHHhhhhhhh---------------------------------------
Q 014628            2 VGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSF---------------------------------------   42 (421)
Q Consensus         2 lg~~i~~~~~g~l~Dr~Grr~~~~~~~~~~~~~~~~~~~~~---------------------------------------   42 (421)
                      +|++++.++.|+++||+|||+++.+++++++++++++++.+                                       
T Consensus        79 i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~alphf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~  158 (633)
T TIGR00805        79 IGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFLLSLPHFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQC  158 (633)
T ss_pred             HHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHHHhChHHhcCCccccccccccccccccccccccCCCCCCcccccc
Confidence            57889999999999999999999999999999999988764                                       


Q ss_pred             ------------hHHHHHHHHHHhhhhhhhhccchhhhhhccCCCCCchhHHHHHHHHHHHHhhhHHHhHHhhhhcc---
Q 014628           43 ------------DFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHL---  107 (421)
Q Consensus        43 ------------~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~---  107 (421)
                                  .+..++++|+++|+|.+..++...+++.|++|+++|+++++++..+..+|.++|+++++++.+.+   
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~  238 (633)
T TIGR00805       159 PSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKNSPLYIGILESIAVFGPAFGYLLGSFCLQIYVDT  238 (633)
T ss_pred             ccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCCccccHHHHHHHHHHHHhhhHHHHHHHHHHHhccccc
Confidence                        24567889999999999999999999999999999999999999999999999999999887542   


Q ss_pred             -------------------hhHHHHHHHHHHHHHHHHHHHhcccccccccCCccccchhhhhhcccccccccCCcccccc
Q 014628          108 -------------------NWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSED  168 (421)
Q Consensus       108 -------------------~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (421)
                                         +|+..|++.+++.++.++..+ ..|++.+.....++.+.... +   ..+   .       
T Consensus       239 ~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~~l~~v~l~-~~p~~lp~~~~~~~~~~~~~-~---~~~---~-------  303 (633)
T TIGR00805       239 GSVNTEDVILTPTDPRWIGAWWIGFLICGGVALLTSIPFF-FFPKALPKEGKRVNVDVHET-E---KLE---K-------  303 (633)
T ss_pred             ccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHH-hCccccCCcccccchhhhhh-h---ccc---c-------
Confidence                               288889999888877776544 44554322110000000000 0   000   0       


Q ss_pred             cchhhhhhhccccchhhhhhhhhhhhhhhHHhhcchhHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhCCccchhHHH-hh
Q 014628          169 ISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADMMFG-GV  247 (421)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  247 (421)
                        .+   +..    +.......++..+..+.++++|.++...+..++.....+++.+|+|.|+++.++.++....+. ..
T Consensus       304 --~~---~~~----~~~~~~~~~~~~~~~~~Ll~n~~f~~~~l~~~~~~~~~~~~~~~lP~yl~~~~g~s~~~ag~l~~~  374 (633)
T TIGR00805       304 --SE---DKS----RKKNSDITKDFPKIIKRLLCNPIYMLVILAQVIDSLAFNGYITFLPKYLENQYGISSAEANFLIGV  374 (633)
T ss_pred             --cc---ccc----chhhhhhHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHhhh
Confidence              00   000    000001223344567889999999999999999999999999999999999999987655333 33


Q ss_pred             hhH-HHHHHhhhhhHHHhhhccccchhhHHHHHHHHHHHHHHHHH---------------------------Hh------
Q 014628          248 TIV-CGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTA---------------------------FC------  293 (421)
Q Consensus       248 ~~~-~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------~~------  293 (421)
                      ..+ +.+++.+++|+++||++.+.+...+......++........                           ..      
T Consensus       375 ~~i~~~~vG~~l~G~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~agv~~~y~~~~~~~~~~~~Cn~~C~  454 (633)
T TIGR00805       375 VNLPAAGLGYLIGGFIMKKFKLNVKKAAYFAICLSTLSYLLCSPLFLIGCESAPVAGVNNPSTDQSIYVENPTDCNRQCS  454 (633)
T ss_pred             hhhhHHHHHHhhhhheeeeecccHHHHHHHHHHHHHHHHHHHHHHHeecCCCCccceeeccCCCcccCCCChhccCCCCC
Confidence            333 56789999999999998664322222222222221111100                           00      


Q ss_pred             --h---------------------------------------------------------hh-hHHHHHHHHHHHHHHHh
Q 014628          294 --L---------------------------------------------------------SS-LYGFLALFTVGELLVFA  313 (421)
Q Consensus       294 --~---------------------------------------------------------~~-~~~~~~~~~~~~~~~~~  313 (421)
                        .                                                         .+ ...+++..++..+..+.
T Consensus       455 C~~~~~~PVCg~~~~tY~SpC~AGC~~~~~~~~~~~y~~CsCi~~~~~~~a~~g~C~~~C~~~~~~f~~~~~~~~~~~~~  534 (633)
T TIGR00805       455 CDSSFFDPVCGDNGLAYLSPCHAGCSMSVGTGSNMVYTNCSCVQTPGNSSAKKGLCNPPCATSLLYFLILFIPLSFIAFI  534 (633)
T ss_pred             CCCCCcccccCCCCCEEECccccCCCCccCCCCcceecccccccCCCCCCCcCCCCCcccchhHHHHHHHHHHHHHHHHh
Confidence              0                                                         00 22334444555566667


Q ss_pred             ccCchhhhhhcccCCchhhHHHHHHHHHHHhhcccCcchhHHHhhhcc
Q 014628          314 TQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHV  361 (421)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~  361 (421)
                      ...+...++.+.+|+++|+.+.|+.....+.+|.+-+|+++|++.|..
T Consensus       535 ~~~p~~~i~lR~V~~~~rs~alg~~~~~~rllg~iP~pi~fG~~iD~s  582 (633)
T TIGR00805       535 TAVPLYMVLLRVVNPEEKSLAIGLQWLCMRVFATIPAPILFGLLIDVS  582 (633)
T ss_pred             ccCchheEEeeccCcccchHHhhHHHHHHHHhcCCChhHHHhhhhhch
Confidence            778888899999999999999999999999999999999999999864

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=99.97  E-value=5.6e-28  Score=249.10  Aligned_cols=312  Identities=13%  Similarity=0.018  Sum_probs=224.7

Q ss_pred             ccccchhhHHHHhhhhcCCchHHHHHHHHHHHHHhhhh---hhhhHHHHHHHHHHhhhhhhhhccchhhhhhccCCCCCc
Q 014628            2 VGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCG---SSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQK   78 (421)
Q Consensus         2 lg~~i~~~~~g~l~Dr~Grr~~~~~~~~~~~~~~~~~~---~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r   78 (421)
                      ++++++++++|+++||+|||++++++.++..++.++..   .+++++.++++|+++|++.+...++..+++.|++|+++|
T Consensus        58 l~~~l~~~~~G~l~Dr~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r  137 (1146)
T PRK08633         58 LPFLLLSSPAGFLADKFSKNRVIRIVKLFEVGLTLLIVLAYYLGWFWLAFAVTFLLGAQSAIYSPAKYGIIPELVGKENL  137 (1146)
T ss_pred             HHHHHHhhhHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHhhchHHHhhhHHhcCcccc
Confidence            46788999999999999999999998877666555443   457899999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHhhhHHHhHHhhhhc---------chhHHHHHHHHHHHHHHHHHHHhcccccccccCCccccchhhh
Q 014628           79 TAWLSMFYMCIPTGVALGYVYGGVVGSH---------LNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVV  149 (421)
Q Consensus        79 ~~~~~~~~~~~~~G~~~g~~~~~~l~~~---------~~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~  149 (421)
                      ++++++.+.+.++|.++|+.+++++.+.         .+|++.+.+..+...+..++..+..|+.+......++.+..  
T Consensus       138 ~~~~~~~~~~~~ig~~lg~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  215 (1146)
T PRK08633        138 SRANGLLEAFTIVAILAGTALFSFLFESVNGNTPSEILGRIAPAGLVLLAVAVLGLIFAYRLPKVPAAAPEVFDKKKY--  215 (1146)
T ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccccccchHHHHHHHHHHHHHHHHHHhcCcCCCCCCccccccccc--
Confidence            9999999999999999999999998875         23555554444443333334444445543221100000000  


Q ss_pred             hhcccccccccCCcccccccchhhhhhhccccchhhhhhhhhhhhhhhHHhhcchhHHHHHHHHHHHHHHHHHHHHHhhH
Q 014628          150 ASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPK  229 (421)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (421)
                                                            ...++....++.+++++.++...+..++..........++|.
T Consensus       216 --------------------------------------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (1146)
T PRK08633        216 --------------------------------------LFPKLLWRNLKLLRSDRVLWLAIIGLSYFWFISQLAQANFPA  257 (1146)
T ss_pred             --------------------------------------ccHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence                                                  001112244666778888888777766666667777888999


Q ss_pred             HHHHhhCCccc-hh-HHHhhhhHHHHHHhhhhhHHHhhhccccchhhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Q 014628          230 AGYNIYHMSNA-DM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVG  307 (421)
Q Consensus       230 ~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  307 (421)
                      |+.+.++.+.. .. .+.....++.+++.++.+++.||++++     +.+..+.++.++..+......+.+..++..++.
T Consensus       258 ~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  332 (1146)
T PRK08633        258 YAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIEL-----GLVPLGALGLALSLFLLPTAPSLASVLVLFFLF  332 (1146)
T ss_pred             HHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEc-----cchhHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence            99888888765 43 444666778889999999999999876     444444444444444444445556666666777


Q ss_pred             HHHHHhccCchhhhhhcccCCchhhHHHHHHHHHHHhhcccCcchhHHHhhh
Q 014628          308 ELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQD  359 (421)
Q Consensus       308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~  359 (421)
                      +++.+...++...++.+..|++.||+++|+.+..... |.++++.+.+.+..
T Consensus       333 g~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~l-g~~~~~~~~~~l~~  383 (1146)
T PRK08633        333 GFSAGLFIVPLNALIQFRAPEKELGKVLAANNFLQNV-GMLLFLALTTLFSG  383 (1146)
T ss_pred             HHHHHHhhHHHHHHHhhcCCccchhhhhHHHHHHHHH-HHHHHHHHHHHHHH
Confidence            7777777778888899999999999999999766665 77666655555443

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=99.96  E-value=8.6e-28  Score=217.11  Aligned_cols=300  Identities=16%  Similarity=0.119  Sum_probs=205.7

Q ss_pred             ccccchhhHHHHhhhhcCCchHHHHHHHHHHHHHhhhhhhh-hHHHHHHHHHHhhhhhhhhccchhhhhhccCCCCCchh
Q 014628            2 VGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSF-DFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTA   80 (421)
Q Consensus         2 lg~~i~~~~~g~l~Dr~Grr~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~   80 (421)
                      +++++++++.|+++||+|||+++.++.++..++.+++++++ +++.+++.|+++|++.+. .+....++.|++|+++|++
T Consensus        48 ~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~r~~  126 (366)
T TIGR00886        48 LAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWAGLAVQSYSVLLLLRLFIGIAGGS-FASCMPWISFFFPKKIQGT  126 (366)
T ss_pred             HHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhchh-hHhHHHHHHHhcCHhhhhH
Confidence            46788999999999999999999999999999999999999 999999999999998664 5667889999999999999


Q ss_pred             HHHHHHHHHHHHhhhHHHhHHhhhh----------cchhHHHH-HHHHHHHHHHHHHHHhcccccccccCCccccchhhh
Q 014628           81 WLSMFYMCIPTGVALGYVYGGVVGS----------HLNWRYAF-WGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVV  149 (421)
Q Consensus        81 ~~~~~~~~~~~G~~~g~~~~~~l~~----------~~~wr~~f-~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~  149 (421)
                      ++++.....++|..+++.+++.+.+          +.+||+.| +..+++..+..++.+...||.++..+  ++++..  
T Consensus       127 ~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~--  202 (366)
T TIGR00886       127 ALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAHLAWGWAFVIVPAGILLLPALLIFFVGADTPPGKP--ATGKLS--  202 (366)
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHhcccccccccccchhHHHHHHHHHHHHHHHHHhcccCCcccc--cchhcc--
Confidence            9999998888888888887766654          34899999 44455555555555555455332110  000000  


Q ss_pred             hhcccccccccCCcccccccchhhhhhhccccchhhhhhhhhhhhhhhHHhhcchhHHHHHHHHHHHHHHHHHHHHHhhH
Q 014628          150 ASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPK  229 (421)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (421)
                              ....    ...  .       ++           +..+..++.+++|.++...+..++..........+.|.
T Consensus       203 --------~~~~----~~~--~-------~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (366)
T TIGR00886       203 --------FKGA----RWS--V-------GT-----------GALGDQLKVFRDRHTWILALLYSVTFGSFLGVSSIFAM  250 (366)
T ss_pred             --------cccc----ccc--c-------cc-----------hhHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence                    0000    000  0       00           00112345667788887777766666677788889999


Q ss_pred             HHHHhhCCccchhH-HHhhhhHHHHHHhhhhhHHHhhhccccchhhHHHHHHHHHHHHHH-HHH-Hhhh--hhHHHHHHH
Q 014628          230 AGYNIYHMSNADMM-FGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISC-LTA-FCLS--SLYGFLALF  304 (421)
Q Consensus       230 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~--~~~~~~~~~  304 (421)
                      |+++.++.++.... +..+..+.++++.++.+++.||+++|     +............. ++. ....  +.+......
T Consensus       251 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  325 (366)
T TIGR00886       251 FFKDQFGLSKVTAGAYASLGGLLGSLARPLGGAISDRLGGA-----RKLLMSFLGVAMGAFLVVLGLVSPLSLAVFIVLF  325 (366)
T ss_pred             HHHHHcCCcHHHHHHHHHHHHHHHHHHhhccchHHHhhccc-----hhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHH
Confidence            99988887765553 45666778889999999999999987     33332222222222 222 2222  344444444


Q ss_pred             HHHHHHHHhccCchhhhhhcccCCchhhHHHHHHHHHHHh
Q 014628          305 TVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHI  344 (421)
Q Consensus       305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  344 (421)
                      .+...+.+...+.......+..| +++|+++|+.+...+.
T Consensus       326 ~~~~~~~g~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~  364 (366)
T TIGR00886       326 VALFFFSGAGNGSTFALVPHIFR-RATGAVSGLVGAIGNL  364 (366)
T ss_pred             HHHHHHhccccchhhhcchhhch-hhcccHHHHHHHhccC
Confidence            55555666666666777777664 7899999998655443

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=99.96  E-value=4.1e-28  Score=227.19  Aligned_cols=379  Identities=15%  Similarity=0.148  Sum_probs=244.7

Q ss_pred             ccccchhhHHHHhhhhcCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhhhhhhhccchhhhhhccCCCCCchhH
Q 014628            2 VGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAW   81 (421)
Q Consensus         2 lg~~i~~~~~g~l~Dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~   81 (421)
                      +|.+++++++|+++|++|||+.++++.+++.++.+++++++|+++++++|+++|+|.|......+.+++|..|++.||..
T Consensus       100 lga~~g~l~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~~a~~~~~l~~GR~l~G~g~G~~~~~~piy~sEiap~~~RG~l  179 (513)
T KOG0254|consen  100 LGALVGSLLAGRLGDRIGRKKTLLLAVVLFLIGAIIIALAPSWYQLIVGRILTGLGVGGASVLAPVYISEIAPAHIRGTL  179 (513)
T ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccchhhhhhcchhhHhhcCChhhhHHH
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhhHHHhHHhhhhc-chhHHHHHHHHHHHHHHHHHHHhcccccccccCCccccchhhhhhccccccccc
Q 014628           82 LSMFYMCIPTGVALGYVYGGVVGSH-LNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASN  160 (421)
Q Consensus        82 ~~~~~~~~~~G~~~g~~~~~~l~~~-~~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (421)
                      .+..+....+|..++..++....+. .+||..+.+..+++++..+. .++.||++++..+.  .+....+.....+....
T Consensus       180 ~~~~~l~~~~Gi~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~-~~~~pesp~~L~~~--g~~~~a~~~l~~l~g~~  256 (513)
T KOG0254|consen  180 VSLYQLFITIGILLGYCINYGTSKVYAGWRIPLGLALIPAVILALG-MLFLPESPRWLIEK--GRLEEAKRSLKRLRGLS  256 (513)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhccCCccHHHHHHHHHHHHHHHHHH-HHhCCCChHHHHHc--CChHHHHHHHHHHhCCC
Confidence            9999999999999997666655443 58999999999999888888 77779988875432  22222222222222211


Q ss_pred             --CCcccccccchhhhhhhccccchhhhhhhhhhhhhhhHHhh----cchhHHHHHHHHHHHHHHHHHHHHHhhHHHHHh
Q 014628          161 --LNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLL----QEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNI  234 (421)
Q Consensus       161 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (421)
                        +.+.+.+..+.....+......         +  ..+++++    +++.+....+..+....+.+...+|.+.+++..
T Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~~~---------~--~~~~~l~~~~~~~~~~i~~~l~~fqq~tG~~~~~~Y~~~if~~~  325 (513)
T KOG0254|consen  257 PEDVEVELELLKIKLLVEAEVAEG---------K--ASWGELFSPKVRKRLIIGLLLQLFQQLTGINYVFYYSTTIFKSA  325 (513)
T ss_pred             CcchHHHHHHHHHHHHHhhhcccc---------c--ccHHHhcCcchHHHHHHHHHHHHHHHHhCCceEEeehHHHHHhc
Confidence              1111111111000000000000         0  0111222    223333334434444445566677888887776


Q ss_pred             hCCccchhHHHhhhhHHHHHHhhhhhHHHhhhccccchhhHHHHHHHHHHHHHHHHHHhh------------hhhHHHHH
Q 014628          235 YHMSNADMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCL------------SSLYGFLA  302 (421)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~  302 (421)
                      +..+.. .....+..+..+++..++.++.||+|||     +.++.+.....++.++....            ...+..++
T Consensus       326 g~~~~~-~~~~~~~~~v~~~~t~~~~~lvd~~gRr-----~lll~s~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  399 (513)
T KOG0254|consen  326 GLKSDT-FLASIILGVVNFLGTLVATYLVDRFGRR-----KLLLFGAAGMSICLVILAVVGVFALYYPNSSKGAGWLAIV  399 (513)
T ss_pred             CCCCch-HHHHHHHHHHHHHHHHHHHHHHHHhccH-----HHHHHhHHHHHHHHHHHHHHHHHhccCCCcccchhHHHHH
Confidence            655433 3334556677788888889999999998     66666555554444433211            11233444


Q ss_pred             HHHHHHHHHHhccCchhh-hhhcccCCchhhHHHHHHHHHHHhhcccCcchhHHHhhhccccchhhhHHHHHHHHHHHHH
Q 014628          303 LFTVGELLVFATQAPVNY-VCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFFLAAGI  381 (421)
Q Consensus       303 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~  381 (421)
                      ..++..........+..+ +..|.+|.+.|+++.++.....+.....+ ......+.+..+ ....+..+.....+....
T Consensus       400 ~~~~~v~~f~~g~g~v~w~~~sEifp~~~r~~~~s~~~~~n~~~~~~v-~~~~~~~~~~~~-~~~~f~~f~~~~~~~~~~  477 (513)
T KOG0254|consen  400 FLCLFIFSFAIGWGPVPWVIVSEIFPLRLRSKGASLAVAVNWLWNFLI-SFFFPFITEALG-IGGTFGYFGGICLLSLII  477 (513)
T ss_pred             HHHHHHHHHhcccccchhhhhhccCcHhHHhhhHHHHHHHHHHHHHHH-HHHHHHHHHhcc-ccchHHHHHHHHHHHHHH
Confidence            444455555556666655 56777888999999999977777755555 434445544433 123444444433333331


Q ss_pred             HHHhhhhcc-ccccccccccccc
Q 014628          382 WFVGIFLKS-IDKFNEDGENQIS  403 (421)
Q Consensus       382 ~~~~~~~~~-~~~~~~~~~~~~~  403 (421)
                       ++....|| |+++.++.++...
T Consensus       478 -fv~~~~pETkg~sleei~~~~~  499 (513)
T KOG0254|consen  478 -FVFFFVPETKGLTLEEINELFE  499 (513)
T ss_pred             -HheEEcccCCCCcHHHHHHHHH
Confidence             22234565 7777776665443

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=99.96  E-value=1.6e-27  Score=198.35  Aligned_cols=362  Identities=14%  Similarity=0.116  Sum_probs=241.6

Q ss_pred             ccccchhhHHHHhhhhcCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhhhhhhhccchhhhhhccCCCCCchhH
Q 014628            2 VGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAW   81 (421)
Q Consensus         2 lg~~i~~~~~g~l~Dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~   81 (421)
                      .|+.+++..+|..+|++|||+.+.+..+...+...+.+.++|+..+++.|.+.|+|.|+ .|...++-.|..|..+|..-
T Consensus       124 ~gmllga~~w~l~~d~~grr~~f~~T~l~t~v~~~is~~spnf~~L~~f~~l~~~g~gg-~pv~~~~yle~lp~~~r~~~  202 (528)
T KOG0253|consen  124 LGMLVGAMVWGLSADTIGRRKGFNLTFLVTGVFGVISGASPNFASLCVFRALWGFGVGG-LPVDSAIYLEFLPSSHRWLL  202 (528)
T ss_pred             hhhhhhhhhhheehhhhhcchhhhhhHHHHHHHHHhhcCCCCeehhhHHHHHHhccCCC-ccHhHHHHHHhccCcCCCcc
Confidence            57889999999999999999999999999999999999999999999999999999998 88999999999999999887


Q ss_pred             HHHHHHHHHHHhhhHHHhHHhhhhcchhHHHHHHHHHHHHHHHHHHHhcccccccccCCccccc-hhhhhhccccccccc
Q 014628           82 LSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGK-AQVVASVSEGSEASN  160 (421)
Q Consensus        82 ~~~~~~~~~~G~~~g~~~~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  160 (421)
                      +-.. ..+.+|.++...++..+..++||||.....+.+..+.+... ++.||+++..-.+.++. ....-++..+.+..+
T Consensus       203 ~V~~-~~waig~v~ea~law~vm~~~gwr~~l~~~~~pl~~~a~f~-~w~~ESpRf~~~~G~~~kAletL~kiArmNg~q  280 (528)
T KOG0253|consen  203 TVMS-FFWAIGQVFEALLAWGVMSNFGWRYLLFTSSTPLMFAARFL-VWVYESPRFYLAKGDDYKALETLHKIARMNGKQ  280 (528)
T ss_pred             hhHH-HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhHHHHHHHHH-hhcccCcchhhhcCChHHHHHHHHHHHHhcCCC
Confidence            7777 99999999999999999999999999998886655555444 44588887643222221 111111112222211


Q ss_pred             CCcc-cccccchhhhh-----hhccccchhhhhhhhhhhhhhhHHhhc----chhHHHHHHHHHHHHHHHHHHHHHhhHH
Q 014628          161 LNDH-VSEDISDQASE-----RSIKSIGESRFLNQLSQFSQDTKVLLQ----EKVYVVNVLGYIAYNFVIGAYSYWGPKA  230 (421)
Q Consensus       161 ~~~~-~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (421)
                      -... ......+++++     ++.+.+..+       +...+..+++.    +..+. ....++...+.+++........
T Consensus       281 lplgvl~~s~~~~~e~e~~~~~~~~~~a~k-------e~rg~~~nLlsp~lrkttll-lw~iwfgnafsyyg~VLlttel  352 (528)
T KOG0253|consen  281 LPLGVLESSAIDRQEQEESDLDDSKSSAAK-------EVRGGTTNLLSPKLRKTTLL-LWRIWFGNAFSYYGSVLLTTEL  352 (528)
T ss_pred             CCcceeeeehhhhhhhhhhchhhhhhcccc-------ccccchHhhcChHHHHHHHH-HHHHHHhhHHHHHHHHHHHHHH
Confidence            1111 00011111111     011111111       11112222222    12221 2222334444455544433332


Q ss_pred             HHHhh-----------------C--Cc-cchhHHHhhhhHHHHHHhhhhhHHHhhhccccchhhHHHHHHHHHHHHHHHH
Q 014628          231 GYNIY-----------------H--MS-NADMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLT  290 (421)
Q Consensus       231 ~~~~~-----------------~--~~-~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (421)
                      .+...                 +  .+ .....-..+..+..+.|.++.+++.||+|||     +.+..+.+++.++.++
T Consensus       353 fqsgd~c~~~~r~~p~e~e~~~~c~~s~~~dYrdllitslaefPGlLIt~~iverlGRK-----kTMal~l~~f~iflfl  427 (528)
T KOG0253|consen  353 FQSGDACPLYNRFLPTELETRANCPLSVAKDYRDLLITSLAEFPGLLITGVIVERLGRK-----KTMALSLILFGIFLFL  427 (528)
T ss_pred             HhccCccccchhcchhHHHhhhcCCccchhHHHHHHHHHHhhCCchhHHHHHHHHhcch-----hHHHHHHHHHHHHHHH
Confidence            22211                 1  11 1111223456678899999999999999999     8888888888888877


Q ss_pred             HHhhhhhHHHHHHHHHHHHHHHhccCchhhhhhcccCCchhhHHHHHHHHHHHhhcccCcchhHHHhhhccccchhhhHH
Q 014628          291 AFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLA  370 (421)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~  370 (421)
                      ...........+..+..-++..+.+...+.+..|.+|+..|+++.|......++ |+++.|.+. ...+. ..+ .+..+
T Consensus       428 l~~c~~rn~~tvllf~arafisg~fqvaYvYtPEVyPTavRatgvGtcSsmaRI-ggI~~p~iA-~~~e~-s~s-l~i~v  503 (528)
T KOG0253|consen  428 LTTCKTRNAYTVLLFTARAFISGAFQVAYVYTPEVYPTAVRATGVGTCSSMARI-GGIFSPVIA-MRAEL-STS-LPIFV  503 (528)
T ss_pred             HHHhcCcchhHHHHHHHHHHHhchheEEEEecCcccchhhhhcchhhhhhHHhh-hhhhhhHHH-HHhcc-cee-ehHHH
Confidence            777666666677778888888899999999999999999999999999655555 999999776 44443 223 44444


Q ss_pred             HHHHHHHHHHHHH
Q 014628          371 LTSIFFLAAGIWF  383 (421)
Q Consensus       371 ~~~~~~~~~~~~~  383 (421)
                      .+.+++++.+...
T Consensus       504 y~~~~ilagIavc  516 (528)
T KOG0253|consen  504 YGALFILAGIAVC  516 (528)
T ss_pred             HHHHHHHHHHHhe
Confidence            5555545444443

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=5.5e-28  Score=203.59  Aligned_cols=325  Identities=14%  Similarity=0.067  Sum_probs=239.9

Q ss_pred             ccchhhHHHHhhhhcCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhhhhhhhccchhhhhhccCCCCC-chhHH
Q 014628            4 LLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQ-KTAWL   82 (421)
Q Consensus         4 ~~i~~~~~g~l~Dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~-r~~~~   82 (421)
                      +.+.+++.|.+.||+|+|..+++|++....+++++++.++++.++++|.+||+|.+.....+.++++|.+|+++ |++++
T Consensus       119 qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg~sy~~l~vAR~LQgvgsA~~~tsglamlAd~f~~d~er~~vm  198 (464)
T KOG3764|consen  119 QLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFGNSYPMLFVARSLQGVGSAFADTSGLAMLADVFPEDNERGSVM  198 (464)
T ss_pred             HHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHhhhhHHHHHhhhHHHHHHHcccchhhhHHH
Confidence            46778999999999999999999999999999999999999999999999999999999999999999999764 89999


Q ss_pred             HHHHHHHHHHhhhHHHhHHhhhhcchhHHHHHHHHHHHHHHHHHHHhcccccccccCCccccchhhhhhcccccccccCC
Q 014628           83 SMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLN  162 (421)
Q Consensus        83 ~~~~~~~~~G~~~g~~~~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (421)
                      |+.-.+.++|..+||++||.+.+..|.+.+|++.+++.++-..+.++..+.+..+.  ++..+                 
T Consensus       199 GialgfislG~lvgPpfGGilYe~~Gk~aPFlVL~~v~Lld~~L~l~vi~p~~~~~--~~~~~-----------------  259 (464)
T KOG3764|consen  199 GIALGFISLGVLVGPPFGGILYEFAGKSAPFLVLAIVLLLDGALQLLVIEPTEMDP--DSTEQ-----------------  259 (464)
T ss_pred             HHHHHHHhccceecCCcccchHhhcCCcCcHHHHHHHHHHHHHHHHheeCccccCc--ccccc-----------------
Confidence            99999999999999999999999999999999999999999888888774322111  00100                 


Q ss_pred             cccccccchhhhhhhccccchhhhhhhhhhhhhhhHHhhcchhHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhCCccchh
Q 014628          163 DHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM  242 (421)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (421)
                                                     ..++++++++|.++.........+.......-.++.+..+....+....
T Consensus       260 -------------------------------~~~~~~Ll~dP~I~~~agai~~~n~~lafLePtlslwm~e~m~~p~w~~  308 (464)
T KOG3764|consen  260 -------------------------------GTPMWSLLMDPYILLIAGAITFSNSSLAFLEPTLSLWMLETMFTPGWEV  308 (464)
T ss_pred             -------------------------------CccHHHHHhCchHhhhhcchhhccchHHHhCcccHHHHHHhccCCCcce
Confidence                                           0246678889998887766555555555555566677777776544344


Q ss_pred             HHH-hhhhHHHHHHhhhhhHHHhhhccccchhhHHHHHHHHHHHHHHHHHHhhhhhHHHHH---HHHHHHHHHHhccCch
Q 014628          243 MFG-GVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLA---LFTVGELLVFATQAPV  318 (421)
Q Consensus       243 ~~~-~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~  318 (421)
                      .+. ....+...++..+.|.+.||+++.+   |.....+.+..+..+......++....++   ..++.+........+.
T Consensus       309 G~~fLp~~~~y~ig~~lfg~la~k~~~~~---wl~~~~gl~~~G~~~~~iP~~~~~~~L~vp~~~l~~~i~~~dasl~P~  385 (464)
T KOG3764|consen  309 GLAFLPASLSYAIGTNLFGKLADKYPHLR---WLLSLGGLATVGVSSGPIPFATSIAQLWVPNFGLGFGIGLADASLIPT  385 (464)
T ss_pred             eeeecccccchhccCchHHHHHHhcCchh---HHHHHHHHHHHHHHhchhHhhhhHHHHhhhhHHHHHHHHHHHHHHhhh
Confidence            333 3345777899999999999999541   13334444444444444444444433333   3333333344455555


Q ss_pred             hhhhhcccCCc---hhhHHHHHHHHHHHhhcccCcchhHHHhhhccccchhhhHHHHHHHHHHHHHHH
Q 014628          319 NYVCLHSVKPS---LRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFFLAAGIWF  383 (421)
Q Consensus       319 ~~~~~~~~~~~---~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~  383 (421)
                      ..++.+....+   ..|...++....... |..+||.+.|.+.+..| +.+.....+...+.-.-++.
T Consensus       386 l~~lvd~rh~s~~~vYGsVyaIad~a~sl-a~a~GP~~gg~iv~~iG-F~wl~~iig~~n~iyapvl~  451 (464)
T KOG3764|consen  386 LGYLVDPRHVSGFNVYGSVYAIADAAFSL-AYAIGPTFGGSLVEAIG-FEWLMTIIGILNLIYAPVLL  451 (464)
T ss_pred             hHHhcchhhccccceeeeHHHHHHHHHHH-hhhccccccchheeehh-HHHHHHHHHHHHHHHHHHHH
Confidence            66666655444   678899998665555 99999999999999988 66666666555555444443

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=99.96  E-value=4e-27  Score=221.88  Aligned_cols=336  Identities=15%  Similarity=0.151  Sum_probs=221.1

Q ss_pred             CccccchhhHHHHhhhhcCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhhhhhhhccchhhhhhccCCCCCchh
Q 014628            1 MVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTA   80 (421)
Q Consensus         1 ~lg~~i~~~~~g~l~Dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~   80 (421)
                      ++|.++|++++|+++||+|||+++++++++..++.++.++++|++.+++.|++.|++.++.......++.|++++++|+.
T Consensus       128 ~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a~~~~~~~~~Rfl~G~~~~~~~~~~~~~~~E~~~~~~R~~  207 (521)
T KOG0255|consen  128 FLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFAPNYWMFLIFRFLSGFFGSGPLTVGFGLVAEIVSPKQRGL  207 (521)
T ss_pred             HHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhccchhHHhHhhheeecCcchhhH
Confidence            46899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhhHHHhHHhhhhcchhHHHHHHHHHHHHHHHHHHHhcccccccccCCccccchhhhhhccccccccc
Q 014628           81 WLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASN  160 (421)
Q Consensus        81 ~~~~~~~~~~~G~~~g~~~~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (421)
                      +..+ ......+..++++.++++.+  +||+.+++..+++++..++ +++.||++++...+.+.++.  .+..++..+.+
T Consensus       208 ~~~~-~~~~~~~~~~~~~~~a~~~~--~Wr~~~~~~~~~~~~~~~~-~~l~~Es~rwl~~~g~~~~a--~~~l~~~a~~n  281 (521)
T KOG0255|consen  208 ALTL-GGFFFVGGLMLPAGAAYITR--DWRWLFWIISIPSGLFLLL-WFLPPESPRWLLSKGRIDEA--IKILKKIAKLN  281 (521)
T ss_pred             HHHH-HHHHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHHH-HHccCcChHHHHHcCchHHH--HHHHHHHHhhc
Confidence            9999 77777888888888888877  7999999999998877666 55557988876444333222  11111111111


Q ss_pred             C-CcccccccchhhhhhhccccchhhhhhhhhhhhhhhHHhhcchhHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhCCcc
Q 014628          161 L-NDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSN  239 (421)
Q Consensus       161 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (421)
                      . ..+..+........+....        ...+....+.++++.|++....+...+..+. ....++.-.+.....+.+ 
T Consensus       282 ~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~-~~~~y~gl~~~~~~lg~~-  351 (521)
T KOG0255|consen  282 GRKLSVKELLRLELLLRPLKL--------LFTEPKISFLDLFRTPRLRYRTLYLLFIWFV-FSLVYYGLSLNVSGLGGN-  351 (521)
T ss_pred             CCCCCcHHHHHHHHHhhHhhh--------hccCCCCchhhhhcCHHHHHHHHHHHHHHHH-HhHHHHhhhhhhhhcCch-
Confidence            0 0000011111000000000        0000012245566666443333322222211 122222222222223322 


Q ss_pred             chhHHHhhhhHHHHHHhhhhhHHHhhhccccchhhHHHHHHHHHHHHHHHHHHhhhhh---HHHHHHHHHHHHHHHhccC
Q 014628          240 ADMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSL---YGFLALFTVGELLVFATQA  316 (421)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~  316 (421)
                       ......+.......+....+...|+.|||     ........+..++++...+....   +...+...+..++.+..+.
T Consensus       352 -~~~~~~~~~~~~~p~~~~~~~~~~~~gR~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  425 (521)
T KOG0255|consen  352 -IYLNFTLSGLVELPAYFRNGLLLPEFGRR-----PPLFLSLFLAGIGLLLFGWLPDDLGGWLHWILPLLGKFFIGSAFN  425 (521)
T ss_pred             -HHHHHHHHHHHHhhHHHHHHHHHHHhCcH-----HHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHH
Confidence             11222333345666677778999999888     66666666666666555544322   2355566666677777777


Q ss_pred             chhhhhhcccCCchhhHHHHHHHHHHHhhcccCcchhHHHhhh
Q 014628          317 PVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQD  359 (421)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~  359 (421)
                      ..+.+..|.+|+..|+.+.+..+..... |.+++|.+.-....
T Consensus       426 ~~~~~~~el~pt~~r~~~~~~~~~~~~~-~~i~ap~~~~~~~~  467 (521)
T KOG0255|consen  426 LIFLYSAELIPTVVRNTAVGAISAAARL-GSILAPLFPLLLRQ  467 (521)
T ss_pred             HHHHHHHhhccHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhh
Confidence            7899999999999999999999655554 88888866544433

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=99.96  E-value=1.3e-26  Score=209.91  Aligned_cols=313  Identities=13%  Similarity=0.043  Sum_probs=218.0

Q ss_pred             ccccchhhHHHHhhhhcCCc----hHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhhhhhhhccchhhhhhccCCCCC
Q 014628            2 VGLLVASPIFASLAKSHNPF----RLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQ   77 (421)
Q Consensus         2 lg~~i~~~~~g~l~Dr~Grr----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~   77 (421)
                      ++..++++++|++.||+|||    +.+.+...+.  .......+++++.+++.|++.|++.+...|...+++.++  +++
T Consensus        50 l~~~l~~~~~g~l~dr~g~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~--~~~  125 (382)
T PRK11128         50 VARFLGSLLIAPRVKDPSQLIPALRLLALLTLLF--AVAFWFGAHSFWLLFVAIGLFNLFFSPLVPLTDALANTW--QKQ  125 (382)
T ss_pred             HHHHhhhHHHHHHHhhhcchHHHHHHHHHHHHHH--HHHHHHhcccHHHHHHHHHHHHHHHcccccHHHHHHHHH--Hhh
Confidence            34577899999999999994    3333332222  223344568899999999999999998999888888877  355


Q ss_pred             chhHHHHHHHHHHHHhhhHHHhHHhhhhcchhHHHHHHHHHHHHHHHHHHHhcccccccccCCccccchhhhhhcccccc
Q 014628           78 KTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSE  157 (421)
Q Consensus        78 r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~  157 (421)
                      |+++++......++|.++||++++++.+++|||..|++.++..++..+ ..+..||..+.    +++++.          
T Consensus       126 ~~~a~~~~~~~~~lg~~igp~lgg~l~~~~g~~~~f~~~~~~~~~~~~-~~~~~~~~~~~----~~~~~~----------  190 (382)
T PRK11128        126 IGLDYGKVRLWGSIAFVIGSALTGKLVSWFGEQAILWILTAGVASMLL-GQLLRPTIMPQ----GESRQQ----------  190 (382)
T ss_pred             ccCCcchHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHHH-HHHccCCCCCc----cccccc----------
Confidence            888899999999999999999999999999999999988765444333 33333432110    000000          


Q ss_pred             cccCCcccccccchhhhhhhccccchhhhhhhhhhhhhhhHHhhcchhHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhCC
Q 014628          158 ASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHM  237 (421)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (421)
                                          .            ++..+++++++|+|.++...+..++..........+.|.|.++ .+.
T Consensus       191 --------------------~------------~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~g~  237 (382)
T PRK11128        191 --------------------E------------SAGWPAWKALLKEPTVWRFLLCVSLLQGSHAAYYGFSAIYWQA-AGY  237 (382)
T ss_pred             --------------------c------------ccccchHHHHHcChhHHHHHHHHHHHHHHhHhHHHHHHHHHHH-CCC
Confidence                                0            0001245678899999888777777777777777888888876 566


Q ss_pred             ccchh-HHHhhhhHHHHHHhhhhhHHHhhhccccchhhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhccC
Q 014628          238 SNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQA  316 (421)
Q Consensus       238 ~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (421)
                      ++... .+..+..+..++..++.+++.||++++     +.+..+........+.....++.+..++..++.+++.+...+
T Consensus       238 s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~-----~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~  312 (382)
T PRK11128        238 SASTIGYLWSLGVVAEVLIFAFSNRLFRRWSAR-----DLLLLSAICGVVRWGLMGSTTALPWLIVIQILHCGTFTVCHL  312 (382)
T ss_pred             CHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH-----HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence            64333 333455677788888899999999887     666666655555555555566667666677777777777667


Q ss_pred             chhhhhhcccCCchhhHHHHHHHHHHHhhcccCcchhHHHhhhccccchhhhHHHHHH
Q 014628          317 PVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSI  374 (421)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~  374 (421)
                      ....+..+. +++++++..+..+......|..++|.+.|.+.|..|.  ..++..+.+
T Consensus       313 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~g~--~~~~~~~~~  367 (382)
T PRK11128        313 AAMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQHLGA--GVFWVMALV  367 (382)
T ss_pred             HHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH--HHHHHHHHH
Confidence            777776665 5666788899886555555778899999999998873  344444433

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=99.96  E-value=6.6e-26  Score=206.78  Aligned_cols=316  Identities=16%  Similarity=0.108  Sum_probs=206.3

Q ss_pred             chhhHHHHhhhhc-----CCch-HHHHHHHHHHHHHhhhhhh---hhHHHHHHHHHHhhhhhhhhccchhhhhhccCCCC
Q 014628            6 VASPIFASLAKSH-----NPFR-LIGVGLSVWTFATAGCGSS---FDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVP   76 (421)
Q Consensus         6 i~~~~~g~l~Dr~-----Grr~-~~~~~~~~~~~~~~~~~~~---~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~   76 (421)
                      +..+++|+++||+     |||| ++..+.++.+++..+.++.   ++++.+++..++.++..+...+...+++.|++|+|
T Consensus        47 ~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~  126 (402)
T PRK11902         47 IFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAASIAAMAFCPPHAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPE  126 (402)
T ss_pred             HHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChh
Confidence            5789999999999     8876 7888888888877777776   45778888888889889989999999999999999


Q ss_pred             CchhHHHHHHHHHHHHhhhHHHhHHhhhhc-chhHHHHHHHHHHHHHHHHHHHhcccccccccCCccccchhhhhhcccc
Q 014628           77 QKTAWLSMFYMCIPTGVALGYVYGGVVGSH-LNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEG  155 (421)
Q Consensus        77 ~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~-~~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~  155 (421)
                      +|+++.++...+..+|.++++.++..+.+. .|||..|++.+++.++..+.. +..||+++..   ++++..        
T Consensus       127 ~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~~~gw~~~f~i~a~~~l~~~l~~-~~~~e~~~~~---~~~~~~--------  194 (402)
T PRK11902        127 ERGAGAAVKVLGYRLAMLVSGGLALWLADRVLGWGNTYLLMAGLMLAGALTT-LWAPEPEVPA---RPPRSL--------  194 (402)
T ss_pred             hhhHHHHHHHHHHHHHHHHHhHHHHHHHhcccCHHHHHHHHHHHHHHHHHHH-HhcCCCcccc---cccchh--------
Confidence            999999999999999999999999998885 599999999988766554433 3345422110   000000        


Q ss_pred             cccccCCcccccccchhhhhhhccccchhhhhhhhhhhhhhhHHhhcchhHHHHHHHHHHHHHHHHHHHHHhhHHHHHhh
Q 014628          156 SEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIY  235 (421)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (421)
                                                        .++..+++++++++|.++...+..++..........+.+.++.+..
T Consensus       195 ----------------------------------~~~~~~~~~~l~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~~~  240 (402)
T PRK11902        195 ----------------------------------GEAVVGPLRDFFSRRGAWALLLLIVLYKLGDAFAGSLSTTFLIRGA  240 (402)
T ss_pred             ----------------------------------HHHHHHHHHHHHhCcCHHHHHHHHHHHHhHHHHHHHHHHHHHHHhc
Confidence                                              0011234667788998887776665555444333344555666667


Q ss_pred             CCccchhHHH-hh-hhHHHHHHhhhhhHHHhhhccccchhhHHHHHHHHHHHHHHH---HHHhh-hhhHHHHHHHHH---
Q 014628          236 HMSNADMMFG-GV-TIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCL---TAFCL-SSLYGFLALFTV---  306 (421)
Q Consensus       236 ~~~~~~~~~~-~~-~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~---  306 (421)
                      +.++....+. .. ...+.+++.++++++.||+++|     +.+........+..+   ..... ++.+.......+   
T Consensus       241 G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~-----~~l~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~  315 (402)
T PRK11902        241 GFSAGEVGIVNKTLGLAATIVGALAGGTLMVRLGLY-----RSLMLFGVLQAVSNLGYWVLAVTPKHLWTMALAIGIENL  315 (402)
T ss_pred             CCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHH-----HHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence            7776554333 22 2345788999999999999987     444433333222221   11222 333433333322   


Q ss_pred             -HHHHHHhccCchhhhhhcccCCchhhHHHHHHHHHHHhhcccCcchhHHHhhhccccchhhhHHHHHHHHHH
Q 014628          307 -GELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFFLA  378 (421)
Q Consensus       307 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~  378 (421)
                       .++..+........++.+..|.+++    ++.+...+. +...++.+.|.+.|..| +...|...+.+.+.+
T Consensus       316 ~~g~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~l-~~~~~~~~~G~l~~~~G-~~~~f~~~~~~~~~~  382 (402)
T PRK11902        316 CGGMGTAAFVALLMALCNRSFSATQY----ALLSALASV-GRVYVGPTSGYLVEAYG-WPGFYLMTVVIALPG  382 (402)
T ss_pred             HHHHHHHHHHHHHHHhcCCCCcHHHH----HHHHHHHHH-HHHHHHHHHHHHHHHhC-hHHHHHHHHHHHHHH
Confidence             3333444445555566666655444    444333333 55444568999999987 656566655554444

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=99.96  E-value=2.6e-33  Score=259.98  Aligned_cols=372  Identities=19%  Similarity=0.217  Sum_probs=236.7

Q ss_pred             CccccchhhHHHHhhhhcCCchHHHHHHHHHHHHHhhhhhhh---hHHHHHHHHHHhhhhhhhhccchhhhhhccCCCCC
Q 014628            1 MVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSF---DFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQ   77 (421)
Q Consensus         1 ~lg~~i~~~~~g~l~Dr~Grr~~~~~~~~~~~~~~~~~~~~~---~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~   77 (421)
                      ++|..+|++++|+++||+|||+.+.++.++..+++++.++++   |++.+.++|+++|++.|...+....++.|..|+++
T Consensus        56 ~~g~~~G~~~~g~~~d~~GRk~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~R~~~G~~~g~~~~~~~~~~~E~~~~~~  135 (451)
T PF00083_consen   56 FIGAIVGALIFGFLADRYGRKPALIISALLMIIGSILIAFAPSYNNFWMLLIGRFLIGFGIGGAYVVSPIYISEIAPPKH  135 (451)
T ss_pred             Hhhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            368899999999999999999999999999999999999999   99999999999999999999999999999999999


Q ss_pred             chhHHHHHHHHHHHHhhhHHHhHHhhhhcc---hhHHHHHHHHHHHHHHHHHHHhcccccccccCCccccchhhhhhccc
Q 014628           78 KTAWLSMFYMCIPTGVALGYVYGGVVGSHL---NWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSE  154 (421)
Q Consensus        78 r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~---~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~  154 (421)
                      |++..++.+.+..+|.+++..++..+.+..   +||..+.+.++++++..+.. ++.||+|++.-.+++.+  +.++..+
T Consensus       136 R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~l~~~~~~-~~~pESP~wL~~~~~~~--~A~~~l~  212 (451)
T PF00083_consen  136 RGFLSSLFQLFWALGILLASLIGYIVSYYSDNWGWRILLIFGAIPSLLVLLLR-FFLPESPRWLLSKGRDE--EAEKVLR  212 (451)
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccceeccccccc--ccccccc
Confidence            999999999999999999988876654433   49999999998887665544 55699998864443333  2222222


Q ss_pred             ccccccCCcccccccchhhhhhhccccchhhhhhhhhhhhhhhHHhhcchh-----HHHHHHHHHHHHHHHHHHHHHhhH
Q 014628          155 GSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKV-----YVVNVLGYIAYNFVIGAYSYWGPK  229 (421)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~  229 (421)
                      +.++.+..++..++..++.++.++++              ..++++++++.     +....+..+...........+.|.
T Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~  278 (451)
T PF00083_consen  213 KLRGKEIEDEEIEEIKAEKKESQESK--------------ASWRDLFRNKKYRKRLLIALLLQFFQQFSGINFIFYYSPS  278 (451)
T ss_pred             cccccccccccccccccccccccccc--------------eeeeeccccccccccccccccccccccccccccccccccc
Confidence            22222111111111111111100000              12333333322     222222112212223344555666


Q ss_pred             HHHHhhCCccchhHHHhhhhHHHHHHhhhhhHHHhhhccccchhhHHHHHHHHHHHHHHHHHH-----hhhh----hHHH
Q 014628          230 AGYNIYHMSNADMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAF-----CLSS----LYGF  300 (421)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~----~~~~  300 (421)
                      +.++. +.+.. ........+...++.+++.++.||+|||     +.++.+.....+..+...     ..++    ....
T Consensus       279 i~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~GRr-----~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  351 (451)
T PF00083_consen  279 IFENA-GISNS-FLATLILGLVNFLGTLLAIFLIDRFGRR-----KLLIIGLLLMAICSLILGIIFFLGVSSSSWWSILS  351 (451)
T ss_pred             ccccc-ccccc-cccccccccccccccccccccccccccc-----ccccccccccccccccccccccccccccccccccc
Confidence            55553 33332 2223444566677788888999999998     666555555444433331     1112    1222


Q ss_pred             HHHHHHHHHHHH-hccCchhhhhhcccCCchhhHHHHHHHHHHHhhcccCcchhHHHhhhccccchhhhHHHHHHHHHHH
Q 014628          301 LALFTVGELLVF-ATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFFLAA  379 (421)
Q Consensus       301 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~  379 (421)
                      ++...+...+.+ +..+....+..|.+|++.|+++.++.+...+. +++++|.+.+.+.+..+.+ ..+.+.+.+.++..
T Consensus       352 i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~i-~~~i~~~~~~~~~~~~~~~-~~~~i~~~~~~i~~  429 (451)
T PF00083_consen  352 IVFLALFFAFFSLGWGPLPWIYTAELFPTKVRSTGIGLSYAVGRI-GGFIIPFLFPYLFNNLGGW-GVFLIFAGVCLIAI  429 (451)
T ss_pred             ceeeeeccccccccccccccccccccccccccccccccccccccc-ccccccccccccccccccc-ccchhhHHHHHHHH
Confidence            223333333333 33344457779999999999999999766665 8888888888888876533 34444444433333


Q ss_pred             HHHHHhhhhcc-cccccccccc
Q 014628          380 GIWFVGIFLKS-IDKFNEDGEN  400 (421)
Q Consensus       380 ~~~~~~~~~~~-~~~~~~~~~~  400 (421)
                      +.  ...+.|| |+++.+|.++
T Consensus       430 i~--~~~~lpET~g~~l~ei~~  449 (451)
T PF00083_consen  430 IF--VYFFLPETKGKTLEEIQE  449 (451)
T ss_pred             hh--eeEEEeeCCCCCHHHHHh
Confidence            22  2235566 7777776654

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>TIGR00901 2A0125 AmpG-related permease

Probab=99.95  E-value=6.1e-26  Score=203.96  Aligned_cols=284  Identities=13%  Similarity=0.093  Sum_probs=206.6

Q ss_pred             hhHHHHhhhhc-----CCchH-HHHHHHHHHHHHhhhhhh---hhHHHHHHHHHHhhhhhhhhccchhhhhhccCCCCCc
Q 014628            8 SPIFASLAKSH-----NPFRL-IGVGLSVWTFATAGCGSS---FDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQK   78 (421)
Q Consensus         8 ~~~~g~l~Dr~-----Grr~~-~~~~~~~~~~~~~~~~~~---~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r   78 (421)
                      .+++|+++||+     ||||. ++.+.++.++.....++.   .+.+.+....++.+++.+...+...+++.|++|+|+|
T Consensus        38 ~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r  117 (356)
T TIGR00901        38 KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLVPSTDLPLLAGLAFLIAFFSATQDIALDAWRLEILSDEEL  117 (356)
T ss_pred             HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhh
Confidence            88999999998     89997 567777777777777776   4666777788888998898899999999999999999


Q ss_pred             hhHHHHHHHHHHHHhhhHHHhHHhhhhcch--------hHHHHHHHHHHHHHHHHHHHhcccccccccCCccccchhhhh
Q 014628           79 TAWLSMFYMCIPTGVALGYVYGGVVGSHLN--------WRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVA  150 (421)
Q Consensus        79 ~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~--------wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~  150 (421)
                      +++.++...+.++|.++++.+++.+.+..+        ||..|++.++..++..+..++..||..+.  ++++ + .   
T Consensus       118 ~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~wr~~f~i~ai~~l~~~~~~~~~~~e~~~~--~~~~-~-~---  190 (356)
T TIGR00901       118 GYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLITLWGYIFFWTALLILPGLLVTLFLAKEPQED--ASVP-K-P---  190 (356)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccHHHHHHHHHHHHHHHHHHHHhccCCCcc--cccc-h-h---
Confidence            999999999999999999999999988888        99999999987777655555444542110  0000 0 0   


Q ss_pred             hcccccccccCCcccccccchhhhhhhccccchhhhhhhhhhhhhhhHHhhcchh---HHHHHHHHHHHHHHHHHHHHHh
Q 014628          151 SVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKV---YVVNVLGYIAYNFVIGAYSYWG  227 (421)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~  227 (421)
                                                            ..++..+.++.++++|.   ++...+..++.....+....+.
T Consensus       191 --------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (356)
T TIGR00901       191 --------------------------------------LTQAVLKPIREFFQRKNMIQALLLLLLIVLYKLGDSAATVLT  232 (356)
T ss_pred             --------------------------------------HHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence                                                  00001124455666664   6666666666677777888899


Q ss_pred             hHHHHHhhCCccchhHH-Hhh-hhHHHHHHhhhhhHHHhhhccccchhhHHHHHHHHHHHHHHHHHHhh-----------
Q 014628          228 PKAGYNIYHMSNADMMF-GGV-TIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCL-----------  294 (421)
Q Consensus       228 ~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------  294 (421)
                      |.|+++ .+.+..+... ... ..+..+++.++++++.||+++|     +.+....++...........           
T Consensus       233 ~~~l~~-~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~-----~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (356)
T TIGR00901       233 TLFLLD-MGFSKEEIALVAKINGLLGAILGGLIGGIIMQPLNIL-----YALLLFGIVQALTNAGFVWLASNGHHDGITF  306 (356)
T ss_pred             HHHHHH-cCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHH-----HHHHHHHHHHHHHHHHHHHHHhcCccccccc
Confidence            999988 6777555432 233 3356788999999999999987     55554444444433322221           


Q ss_pred             hhhHHHHHHHHHHHHHHHhccCchhhhhhcccCCchhhHHHHHHHHHH
Q 014628          295 SSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSI  342 (421)
Q Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  342 (421)
                      ++.+......++.+++.+...+....+..+.+|+++|++..|+.+...
T Consensus       307 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~  354 (356)
T TIGR00901       307 PHLLMLFLTITLEAVTGGLGTVAFVAFLSKLSNPKFGATQMALLSSLS  354 (356)
T ss_pred             chHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHH
Confidence            233444555556677778888899999999999999999999986544

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.95  E-value=1.9e-26  Score=211.62  Aligned_cols=330  Identities=16%  Similarity=0.081  Sum_probs=203.7

Q ss_pred             ccccchhhHHHHhhhhcCCchHHHHHHHHHHHHHhhhh---hhhh-----HHHHHHHHHHhhhhhhhhccchhhhhhccC
Q 014628            2 VGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCG---SSFD-----FWSIAICRMLVGVGEASFISLAAPFIDDNA   73 (421)
Q Consensus         2 lg~~i~~~~~g~l~Dr~Grr~~~~~~~~~~~~~~~~~~---~~~~-----~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~   73 (421)
                      +++.++++++|+++||+|||++++++..+..++.....   .++.     ....++.+++.|.+.....+....+..+ .
T Consensus        57 l~~~i~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  135 (420)
T PRK09528         57 LFALLFQPLYGLISDKLGLKKHLLWIISGLLVLFGPFFIYVFAPLLQYNILLGAIVGGIYLGFGFLAGAGAIEAYIER-V  135 (420)
T ss_pred             HHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccchhhhhhHHHH-H
Confidence            45678999999999999999999887666654433221   1111     1112223333333333222223333222 2


Q ss_pred             CCCCchhHHHHHHHHHHHHhhhHHHhHHhhhhcchhHHHHHHHHHHHHHHHHHHHhcccccccccCCccccchhhhhhcc
Q 014628           74 PVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVS  153 (421)
Q Consensus        74 ~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~  153 (421)
                       .+++++.++......++|..++|.+++.+.+. +|+++|++.+++.++..++.++..|+.++..   +..++.      
T Consensus       136 -~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~-~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~------  204 (420)
T PRK09528        136 -SRRSGFEYGRARMWGSLGWALCAFIAGILFNI-NPQINFWLGSGSALILLVLLFFAKPDAPSTA---KVANAL------  204 (420)
T ss_pred             -HhhccccchhhHHhhhHHHHHHHHHHHHHHhc-CchHhHHHHHHHHHHHHHHHhcccccccchh---hhccch------
Confidence             24577888999999999999999999988764 8999999988887766666555544321110   000000      


Q ss_pred             cccccccCCcccccccchhhhhhhccccchhhhhhhhhhhhhhhHHhhcchhHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 014628          154 EGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYN  233 (421)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (421)
                                        +   ++++           +...++.+..+|+|.++...+........+.....+.|.|+.+
T Consensus       205 ------------------~---~~~~-----------~~~~~~~~~~l~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~  252 (420)
T PRK09528        205 ------------------G---ANAS-----------AVSLKDALALLKLPKFWFLVLYVIGVACFYDVFDQQFPNFFAS  252 (420)
T ss_pred             ------------------h---cccc-----------cccHHHHHHHccCCCeEeehHHHHHHHHHHHHHHHHHHHHHHH
Confidence                              0   0000           0001234456678877765555444444455555567777765


Q ss_pred             hhC---Cccchh-HHHhhhhHHHHHHhhhhhHHHhhhccccchhhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Q 014628          234 IYH---MSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGEL  309 (421)
Q Consensus       234 ~~~---~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  309 (421)
                      ..+   .+.... ...++..+...++.++.|++.||+++|     +.+.....+..+...+....++.+.......+.+.
T Consensus       253 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~-----~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~l~g~  327 (420)
T PRK09528        253 FFATPEQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAK-----NALLLAGTIMAVRIIGSGFATGPLEVSILKLLHAF  327 (420)
T ss_pred             HHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcc-----hhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence            542   222222 333555667788999999999999998     66655555555544444445566655555555555


Q ss_pred             HHHhccCchhhhhhcccCCchhhHHHHH-HHHHHHhhcccCcchhHHHhhhccccchhhhHHHHHHHHHHHHHH
Q 014628          310 LVFATQAPVNYVCLHSVKPSLRALSMAI-STVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFFLAAGIW  382 (421)
Q Consensus       310 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~  382 (421)
                      ......+....+..+..|++.+++..+. .+.... +|.+++|.+.|++.|..| |+..+...+.+.++..++.
T Consensus       328 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~-lg~~ig~~~~G~l~~~~G-~~~~f~~~~~~~~i~~~~~  399 (420)
T PRK09528        328 EVPFLLVGVFKYITLNFDVRLSATIYLVGFQFAKQ-LGAVFLSTLAGNLYDSIG-FQGTYLILGGIVLLFTLIS  399 (420)
T ss_pred             HHHHHHHHHHHHHHHHcCccceeeeeeehHHHHHH-HHHHHHHHHHHHHHHhhC-chHHHHHHHHHHHHHHHHH
Confidence            5555555566778888899888887665 434444 488999999999999876 7778887776655444333

>TIGR00889 2A0110 nucleoside transporter

Probab=99.95  E-value=1.1e-25  Score=205.29  Aligned_cols=324  Identities=10%  Similarity=0.020  Sum_probs=214.4

Q ss_pred             ccccchhhHHHHhhhhcCC-chHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhhhhhhhccchhhhhh--------cc
Q 014628            2 VGLLVASPIFASLAKSHNP-FRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFID--------DN   72 (421)
Q Consensus         2 lg~~i~~~~~g~l~Dr~Gr-r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~--------~~   72 (421)
                      ++..++++++|+++||+|| |+++.++.++.+++..+..+.++++.+.+.|++.|++.+...+...++..        |.
T Consensus        49 ~~~~i~~~~~g~l~dr~g~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~g~~~  128 (418)
T TIGR00889        49 IAAILMPILVGIIADKWLSAQKVYAVCHFAGALLLFFAAQVTTPAGMFPVLLANSLAYMPTIALTNSISYANLPQAGLDV  128 (418)
T ss_pred             HHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhhcCCCc
Confidence            4678899999999999965 77888889988888888899999999999999999987766666555432        22


Q ss_pred             CCCCCchhHHHHHHHHHHHHhhhHHHhHHhhhhcchhHHHHHHHHHHHHHHHHHHHhcccccccccCCccccchhhhhhc
Q 014628           73 APVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASV  152 (421)
Q Consensus        73 ~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~  152 (421)
                      .....|.|..|      .+|.++||.+++.+.....|+ +|++.++..++..++ .+..||.++..   ++++..     
T Consensus       129 ~~~~~~~r~~G------~lG~~ig~~l~g~l~~~~~~~-~f~~~~~~~~~~~~~-~~~~~e~~~~~---~~~~~~-----  192 (418)
T TIGR00889       129 VTDFPPIRVMG------TIGFIAAMWAVSLLDIELSNI-QLYITAGSSALLGVF-ALTLPDIPVAK---STAKMS-----  192 (418)
T ss_pred             hhcCCCeeeeh------hHHHHHHHHHHHHhcccchhH-HHHHHHHHHHHHHHH-HhcCCCCCCCc---cccccC-----
Confidence            22234555555      468888888888774433454 455666655555443 33446542110   000000     


Q ss_pred             ccccccccCCcccccccchhhhhhhccccchhhhhhhhhhhhhhhHHhhcchhHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 014628          153 SEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGY  232 (421)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (421)
                                         .               .  +....+.+.++|+|.++...+..++..........+.|.+.+
T Consensus       193 -------------------~---------------~--~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (418)
T TIGR00889       193 -------------------I---------------K--VMLGLDAFILFKNKRMAIFFFFSMLLGAPLQITNIFGNGFLH  236 (418)
T ss_pred             -------------------H---------------H--HHhhhhHHHHhcCCCeeeHHHHHHHHHhHHHHHHHhHHHHHH
Confidence                               0               0  000012345678888877777766666655566677788877


Q ss_pred             HhhCCcc-------ch-hHHHhhhhHHHHHHhhhhhHHHhhhccccchhhHHHHHHHHHHHHHHHHHHhhh-h---hHHH
Q 014628          233 NIYHMSN-------AD-MMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLS-S---LYGF  300 (421)
Q Consensus       233 ~~~~~~~-------~~-~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~  300 (421)
                      +.+....       .. ....++..+..+++.+..+++.||+++|     +.+..+.++..+......... +   .+..
T Consensus       237 ~~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r-----~~l~~~~~~~~v~~~l~~~~~~~~~~~~~l  311 (418)
T TIGR00889       237 EFGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRFGIK-----KVMLLSLVAWALRFGFFAYGDPEYFGYALL  311 (418)
T ss_pred             HhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcH-----HHHHHHHHHHHHHHHHHHHcCcchhhHHHH
Confidence            6432211       11 2334566677888899999999999998     777666666655544333322 1   2334


Q ss_pred             HHHHHHHHHHHHhccCchhhhhhcccCCchhhHHHHHHHHHHHhhcccCcchhHHHhhhcccc-----chhhhHHHHHHH
Q 014628          301 LALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNN-----WRKTTLALTSIF  375 (421)
Q Consensus       301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~g~-----~~~~~~~~~~~~  375 (421)
                      ++..++.+.+.+...+....++.+.+|++.|++++|+.+...+.+|.++||.+.|++.|+.|+     |+..|.+.+++.
T Consensus       312 ~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~  391 (418)
T TIGR00889       312 FLSMIVYGCAFDFFNISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFAGYI  391 (418)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHH
Confidence            445556666666666777788899999999999999996455555889999999999998653     667777666665


Q ss_pred             HHHHHHH
Q 014628          376 FLAAGIW  382 (421)
Q Consensus       376 ~~~~~~~  382 (421)
                      +++.+..
T Consensus       392 ~i~~~l~  398 (418)
T TIGR00889       392 AILAVLF  398 (418)
T ss_pred             HHHHHHH
Confidence            5554433

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=99.95  E-value=6.3e-28  Score=206.92  Aligned_cols=376  Identities=16%  Similarity=0.148  Sum_probs=241.2

Q ss_pred             ccccchhhHHHHhhhhcCCchHHHHHHHHHHHHHhhhhhhh-------hHHHHHHHHHHhhhhhhhhccchhhhhhccCC
Q 014628            2 VGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSF-------DFWSIAICRMLVGVGEASFISLAAPFIDDNAP   74 (421)
Q Consensus         2 lg~~i~~~~~g~l~Dr~Grr~~~~~~~~~~~~~~~~~~~~~-------~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~   74 (421)
                      +|.++||++.|+++||+|||+++...+++..+++++++++.       -.+++.+.|++.|+|.|+-+|.+.++.+|...
T Consensus        95 vGti~GQl~FG~lgD~~GRK~vYG~~liImIi~t~~~~~s~~~~~~~~~m~~L~~~R~~LGiGIGGDYPlSAtI~SE~an  174 (538)
T KOG0252|consen   95 VGTIFGQLFFGWLGDKFGRKKVYGKELIIMIICSALSGLSVGTTSPLGVMMTLCFFRFLLGIGIGGDYPLSATIMSESAN  174 (538)
T ss_pred             HHHHHHHHHHHHHHhhhcchhhhhHHHHHHHHHHHHhccCCCCCCCcchhhHHHHHHHHhhccccCCCcchHHHhhhhhh
Confidence            68899999999999999999999999999999999888763       25788899999999999999999999999999


Q ss_pred             CCCchhHHHHHHHHHHHHhhhHHHhHHhhhhc---------------chhHHHHHHHHHHHHHHHHHHHhcccccccccC
Q 014628           75 VPQKTAWLSMFYMCIPTGVALGYVYGGVVGSH---------------LNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFA  139 (421)
Q Consensus        75 ~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~---------------~~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~  139 (421)
                      ++.||...+...+..+.|...|.+++-.+..-               .=||..|.+.+++++..... -+..||+.+...
T Consensus       175 ~~~RGa~iaavFa~Qg~GilaG~ivt~Iv~~~fe~~~~~~~~~~~ld~vWRl~~glg~vpa~~~ly~-Rl~M~Et~~Y~a  253 (538)
T KOG0252|consen  175 KKTRGAFIAAVFAMQGFGILAGGIVALIVSAIFEKIFNGPSTYPHLDGVWRIIFGLGAVPALLVLYF-RLKMPETARYTA  253 (538)
T ss_pred             hccccceeEEEEEecchhHhhccHHHHHHHHHHhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHh-hhcCCcchhHHH
Confidence            99999999998888888888888777555421               13999999888766544332 223377655431


Q ss_pred             CccccchhhhhhcccccccccCCcccccccchhhhhhhccccchhhhhhhhhhhhhhhHHhhcchhHHHHHHHHHHHHHH
Q 014628          140 PAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFV  219 (421)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (421)
                      ..++......         .+..+....++.++...+...+    +..++.+.+.+.+... .-+........++.....
T Consensus       254 l~~~~~~~a~---------~d~~k~~~~~~~~~~~~~~~~~----~~~~~~~~F~~~f~~~-hg~~Llgt~~~WFllDia  319 (538)
T KOG0252|consen  254 LVSKKLKQAA---------GDMKKVLSVDIEAESTAESDVP----PPSNSFGLFSRLFLRW-HGKHLLGTAGTWFLLDIA  319 (538)
T ss_pred             HhhcCHhhhh---------hccccccccccchhhccccCCC----CcccccchHHHHHHHH-HHHHHHHHHHHHHhhhhh
Confidence            1111100000         0000000111111111100000    0001111111111111 224556667778888888


Q ss_pred             HHHHHHHhhHHHHHhhCCccchh---------HHHhhhhHHHHHHhhhhhHHHhhhccccchhhHHHHHHHHHHHHHHHH
Q 014628          220 IGAYSYWGPKAGYNIYHMSNADM---------MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLT  290 (421)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (421)
                      ++....+....+.+..-.+....         .-..+.....++|..+..+++|++||+     +..+..+.+..+..+.
T Consensus       320 fy~~nL~~s~I~~~ig~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~iGRk-----~iq~~GF~~~~i~~~~  394 (538)
T KOG0252|consen  320 FYGQNLFQSVIFSAIGVIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDIIGRK-----YIQLMGFFIMTIFFFV  394 (538)
T ss_pred             hhccccHHHHHHHhhccCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeehhhhH-----HHHHhhHHHHHHHHHH
Confidence            88888888888775433221111         111223344456777888899999998     6666666666665555


Q ss_pred             HHhhhh----hHHHHHHHHHHHHHHH-hccCchhhhhhcccCCchhhHHHHHHHHHHHhhcccCcchhHHHhhh-----c
Q 014628          291 AFCLSS----LYGFLALFTVGELLVF-ATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQD-----H  360 (421)
Q Consensus       291 ~~~~~~----~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~-----~  360 (421)
                      +....+    ....++...+..++.+ +-......+.+|.+|.+.|++..|+. ...+-+|++++...+.++.+     .
T Consensus       395 ~~~~y~~~~~~~Gf~v~y~l~~ff~NFGPn~ttfivpaE~FParvR~t~hGIs-AA~GK~GAivg~~~F~~~t~~~yp~~  473 (538)
T KOG0252|consen  395 IAGPYNQLENTIGFVVLYSLTFFFGNFGPNATTFIVPAEIFPARVRSTCHGIS-AASGKAGAIVGAFGFLYLTDHNYPPN  473 (538)
T ss_pred             HcCCcccccccCceeehHHHHHHHHhcCCCceeEEeehhhchHHHhhhhhhHH-HHhccchHHHHHHHhhHhhhccCCcc
Confidence            544333    2334444455444444 44455566778888889999999999 56666699999999998888     4


Q ss_pred             cccchhhhHHHHHHHHHHHHHHHHhhhhcc-cccccccccccc
Q 014628          361 VNNWRKTTLALTSIFFLAAGIWFVGIFLKS-IDKFNEDGENQI  402 (421)
Q Consensus       361 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~  402 (421)
                      .+ ....++..+.+...+.+..+   .++| +++..++.+++.
T Consensus       474 ~g-~~~v~~i~~~~~~~gi~~T~---l~pEtk~~~leei~~e~  512 (538)
T KOG0252|consen  474 IG-VRNVFIILAGCMLLGILFTL---LIPETKGKSLEEISNEE  512 (538)
T ss_pred             cc-chHHHHHHHHHHHHhHheeE---EeecccccCHHHhcChh
Confidence            33 56777777777666665554   3344 666666654433

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=99.95  E-value=1.4e-26  Score=194.07  Aligned_cols=343  Identities=13%  Similarity=0.021  Sum_probs=205.4

Q ss_pred             ccccchhhHHHHhhhhcCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhhhhhhhccchhhhhhccCCCCCchhH
Q 014628            2 VGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAW   81 (421)
Q Consensus         2 lg~~i~~~~~g~l~Dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~   81 (421)
                      +++.+.++.+|.++||+|||+++++|++..++...+.+++.|+..++++|++.|+..| ...+..++++|.+++|+|+++
T Consensus        79 ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S~~F~afv~aR~l~Gi~kg-nl~v~rAiisdV~sek~r~l~  157 (451)
T KOG2615|consen   79 ILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALSRNFAAFVLARFLGGIFKG-NLSVIRAIISDVVSEKYRPLG  157 (451)
T ss_pred             HHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccC-chHHHHHHHHhhcChhhccce
Confidence            4678899999999999999999999999999999999999999777778999999998 556789999999999999999


Q ss_pred             HHHHHHHHHHHhhhHHHhHHhhhh---cchhHHHHHHHH----HHHHHHHHHHHhcccccccccCCccccchhhhhhccc
Q 014628           82 LSMFYMCIPTGVALGYVYGGVVGS---HLNWRYAFWGEA----ILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSE  154 (421)
Q Consensus        82 ~~~~~~~~~~G~~~g~~~~~~l~~---~~~wr~~f~~~~----~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~  154 (421)
                      ++......++|.++||.+|+++.+   ..| +.+|....    ++...-.....++.||+.+.+++.+++...       
T Consensus       158 ms~v~~a~~lGfilGPmIGgyla~f~~~~g-~~p~alP~~~v~i~a~~~v~~~~~~lpETL~~rk~~~~~~~~-------  229 (451)
T KOG2615|consen  158 MSLVGTAFGLGFILGPMIGGYLAQFSSISG-SYPFALPCLLVFILAAGDVTFFPWFLPETLPLRKRNDEHSTL-------  229 (451)
T ss_pred             eeeeehhhhcchhhcchhhhHHHhhHhhhc-cCchHHHHHHHHHHHHHHHHHHHHhCCccccchhhcccccch-------
Confidence            999999999999999999999987   222 12222222    222221222334458876543322111100       


Q ss_pred             ccccccCCcccccccchhhhhhhccccchhhhhhhhhhhhhhhHHhhcchhHHHHHHHHHHHHHHHHHHHHHhhHHHHHh
Q 014628          155 GSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNI  234 (421)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (421)
                                     .+..+++.+..+.+.   .......++++..........+.+..+.+...+..+.++.+.+..+.
T Consensus       230 ---------------~~~~~~~~~~~~~~~---~~~v~~lrn~p~~~~i~~~~i~~l~~~ly~~l~s~~~~t~~~l~~~r  291 (451)
T KOG2615|consen  230 ---------------QEAADDRLALLKFAR---IFKVAALRNPPLLDFISVLRIFGLHYFLYLELFSGLENTVLFLTHGR  291 (451)
T ss_pred             ---------------hhhhhhhhhhcchhh---hhhhhhhcCccccchHHHHHHHHHHHHHHHHHHHHHHhhHHHhhcCc
Confidence                           000000000000000   00000000110000011122233334444455555555555554566


Q ss_pred             hCCccchhHHHhhhhHHHHHHhhhhhHHHhhhccccchhhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhc
Q 014628          235 YHMSNADMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVFAT  314 (421)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (421)
                      +++++.+..-  +....++.+.++.+.+..+..+........+......+....++...............+..+.....
T Consensus       292 fg~ss~~~G~--vl~~tGl~m~~~ql~~~~~l~~~~~~~~a~l~~~l~~~vP~~llls~~~~~~~l~~~s~l~sf~~A~~  369 (451)
T KOG2615|consen  292 FGYSSMQQGK--VLSTTGLLMLVIQLALVPILPRYKGNIKAVLLFSLLLIVPAFLLLSLARTPVVLYLGSTLKSFSTASV  369 (451)
T ss_pred             cCCChhhhee--eeehhhHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHh
Confidence            7777544422  12233344444555555554443211112333333333334444444444555555666666666677


Q ss_pred             cCchhhhhhcccCCchhhHHHHHHHHHHHhhcccCcchhHHHhhhccccchhhhHHHHHH
Q 014628          315 QAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSI  374 (421)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~  374 (421)
                      .+....+.....|+++||+.+|+....... +.++||.+.|.+..+...-+..+...+.+
T Consensus       370 vt~Lt~Lv~~~~~~~qrG~~~Gi~~Sl~al-aRaiGPlv~g~i~~Ws~~~~~a~~~~~~L  428 (451)
T KOG2615|consen  370 VTCLTSLVHKYGPQSQRGTLNGIFRSLGAL-ARAIGPLVSGVIFSWSQGAQPAYIAWGAL  428 (451)
T ss_pred             hHHHHHHHHhcCCcccchHHHHHHHHHHHH-HHHhhhhhhheeEEEecCCCceeeehHHH
Confidence            777788888889999999999999655554 99999999888877654343444444333

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=99.95  E-value=5.4e-26  Score=210.31  Aligned_cols=309  Identities=14%  Similarity=0.123  Sum_probs=217.4

Q ss_pred             cccchhhHHHHhhhh----cCCch-HHHHHHHHHHHHHhhhhhhhh------HHHHHHHHHHhhhhhhhhccchhhhhhc
Q 014628            3 GLLVASPIFASLAKS----HNPFR-LIGVGLSVWTFATAGCGSSFD------FWSIAICRMLVGVGEASFISLAAPFIDD   71 (421)
Q Consensus         3 g~~i~~~~~g~l~Dr----~Grr~-~~~~~~~~~~~~~~~~~~~~~------~~~l~~~r~l~G~~~~~~~~~~~~~i~~   71 (421)
                      ..++..|+.|+++||    +|||| .++.+....+++.+++.+.++      ...+++.+++.+++.+...+...++..|
T Consensus        47 ~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~  126 (437)
T TIGR00792        47 LDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLFTTPDFSATGKLVYAYITYILLGLFYSFVNIPYWSLVPA  126 (437)
T ss_pred             HHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHHHHHHhhcccHhhCccc
Confidence            457889999999998    67744 677888888888887776654      4566778899999998888888889999


Q ss_pred             cC-CCCCchhHHHHHHHHHHHHhhhHHHhHHhhh-------hcchhHHHHHHHHHHHHHHHHHHHhcccccccccCCccc
Q 014628           72 NA-PVPQKTAWLSMFYMCIPTGVALGYVYGGVVG-------SHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAES  143 (421)
Q Consensus        72 ~~-~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~-------~~~~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~  143 (421)
                      .. ++++|++..++.+.+..+|..+++.+.+.+.       +..+||+.+.+.++++++..++.++..||.++..  +++
T Consensus       127 ~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~e~~~~~--~~~  204 (437)
T TIGR00792       127 ITLDPRERESLSTFRRFGATLGGLLVAVIVLPLVSYFGGGDDKFGWFMFALVLALIGVVSLIICFFGTKERYSEI--PKN  204 (437)
T ss_pred             ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccHHHHHHHHHHHHHHHHHHHHcCCEecCCCC--Ccc
Confidence            87 4688999999999999998888777665554       2458999999999888877776666656532110  000


Q ss_pred             cchhhhhhcccccccccCCcccccccchhhhhhhccccchhhhhhhhhhhhhhhHHhhcchhHHHHHHHHHHHHHHHHHH
Q 014628          144 GKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAY  223 (421)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  223 (421)
                      ++ .                                          ..+..+.++.++++|.++...+..++........
T Consensus       205 ~~-~------------------------------------------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  241 (437)
T TIGR00792       205 IE-K------------------------------------------KLSLKQIFKALFKNDQLLILCLAYLFYNLAFNIK  241 (437)
T ss_pred             cc-c------------------------------------------CCCHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHH
Confidence            00 0                                          0011234667788999888877777766666666


Q ss_pred             HHHhhHHHHHhhCCccchhHHHhhhhHHHHHHhhhhhHHHhhhccccchhhHHHHHHHHHHHHHHHHHHhh-hhhHHHHH
Q 014628          224 SYWGPKAGYNIYHMSNADMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCL-SSLYGFLA  302 (421)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  302 (421)
                      ..+.+.|.+...+.+.....+..+..++.+++.++.+++.||+++|     +.+..+..+..+..+..... ++.+...+
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (437)
T TIGR00792       242 NGVQVYYFTYVLGDPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRK-----ILFAGGILLMVLGYLIFFFAGSNLPLILV  316 (437)
T ss_pred             cchhheeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcH-----HHHHHHHHHHHHHHHHHHHcchhHHHHHH
Confidence            5566666555444333233444556788899999999999999987     55555555544444433332 34444555


Q ss_pred             HHHHHHHHHHhccCchhhhhhcccC-------CchhhHHHHHHHHHHHhhcccCcchhHHHhhhccc
Q 014628          303 LFTVGELLVFATQAPVNYVCLHSVK-------PSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVN  362 (421)
Q Consensus       303 ~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~g  362 (421)
                      ..++.+++.+...+...+...|..+       ++.+|.+.|+.+..... |..+++.+.|.+.+..|
T Consensus       317 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~-g~~lg~~i~g~ll~~~G  382 (437)
T TIGR00792       317 LIILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKL-GQALAGFLVGLILGIIG  382 (437)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHH-HHHHHHHHHHHHHHHcC
Confidence            5566667776666777777777654       45689999999766666 88999999999988765

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=99.95  E-value=2.8e-25  Score=188.72  Aligned_cols=306  Identities=17%  Similarity=0.134  Sum_probs=246.3

Q ss_pred             ccccchhhHHHHhhhhcCCchHHHHHHHHHHHHHhhhh---hhhhHHHHHHHHHHhhhhhhhhccchhhhhhccCCCCCc
Q 014628            2 VGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCG---SSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQK   78 (421)
Q Consensus         2 lg~~i~~~~~g~l~Dr~Grr~~~~~~~~~~~~~~~~~~---~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r   78 (421)
                      .||.+.+++.|++.+|+|+|+.++.|+.++++++.+..   ...++..++.+-++.|.|.+........++....++++.
T Consensus        59 ~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~avg~~lF~pAa~~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a  138 (422)
T COG0738          59 GGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGAALFWPAASSKSYGFFLVALFILASGIGLLETAANPYVTLLGKPESA  138 (422)
T ss_pred             HHHHHHhccHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchhH
Confidence            47889999999999999999999999999999999984   567899999999999999999999999999999999989


Q ss_pred             hhHHHHHHHHHHHHhhhHHHhHHhhhhc-------------------chhHHHHHHHHHHHHHHHHHHHhcc-ccccccc
Q 014628           79 TAWLSMFYMCIPTGVALGYVYGGVVGSH-------------------LNWRYAFWGEAILMLPFAVLAFVIK-PLQLKGF  138 (421)
Q Consensus        79 ~~~~~~~~~~~~~G~~~g~~~~~~l~~~-------------------~~wr~~f~~~~~~~~~~~~~~~~~~-p~~~~~~  138 (421)
                      .+.+++.+...++|.+++|++++.+..+                   ..||++|...+...++..+...... |+.....
T Consensus       139 ~~rlnl~q~fn~lGa~~gp~~g~~lils~~~~~~~~~~~~~~~~~~~~~v~~pYl~~~~~lvll~v~~~~~k~p~~~~~~  218 (422)
T COG0738         139 AFRLNLAQAFNGLGAILGPLLGSSLILSGVALTMSAAQILAIKGADASSVQFPYLILAGLLVLLAVLILLSKLPDLQVAA  218 (422)
T ss_pred             HHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhccCCcCCccc
Confidence            9999999999999999999999988762                   2488899988877666666555443 3321110


Q ss_pred             CCccccchhhhhhcccccccccCCcccccccchhhhhhhccccchhhhhhhhhhhhhhhHHhhcchhHHHHHHHHHHHHH
Q 014628          139 APAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNF  218 (421)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  218 (421)
                        +++.+..                                              .....+++++|.++...+..+++..
T Consensus       219 --~~~~~~~----------------------------------------------~~~~~~l~~~~~~~~gvl~~FlYVG  250 (422)
T COG0738         219 --PSLGASG----------------------------------------------SAGLSSLFQNKHLRLGVLAIFLYVG  250 (422)
T ss_pred             --ccccccc----------------------------------------------cchHHHHHhChHHHHHHHHHHHHHh
Confidence              0000000                                              0135578899999999999999999


Q ss_pred             HHHHHHHHhhHHHHHhhCCccchh-HHHhhhhHHHHHHhhhhhHHHhhhccccchhhHHHHHHHHHHHHHHHHHHhhhhh
Q 014628          219 VIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSL  297 (421)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (421)
                      .......|++.|+.+..+.+..+. .+.+..+.+.++|++++.++..|+...     +.+....+.....++.....++.
T Consensus       251 ~Eva~gsfl~~y~~~~~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~~~~~-----k~Laf~a~~~ill~~~~~l~~g~  325 (422)
T COG0738         251 AEVAIGSFLVSYLEELLGLNEQQAAYYLSFFWVGFMVGRFIGSALMSRIKPE-----KYLAFYALIAILLLLAVALIGGV  325 (422)
T ss_pred             HHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHH-----HHHHHHHHHHHHHHHHHHHhcCh
Confidence            999999999999999877776555 556788899999999999999999887     77777777777666666666664


Q ss_pred             HHHHHHHHHHHHHHHhccCchhhhhhcccCCchhhHHHHHHHHHHHhhcccCcchhHHHhhhccccc
Q 014628          298 YGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNW  364 (421)
Q Consensus       298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~g~~  364 (421)
                       ..+....+.+++.+..+|..++...+..| ++...+.++.  .+..+|+++-|.+.|++.|..|..
T Consensus       326 -v~~~~l~~ig~F~simfPTIfslal~~l~-~~ts~~s~~l--~maivGGAiiP~l~G~i~d~~g~~  388 (422)
T COG0738         326 -VALYALFLIGLFNSIMFPTIFSLALKNLG-EHTSVGSGLL--VMAIVGGAIIPPLQGVIADMFGIQ  388 (422)
T ss_pred             -HHHHHHHHHHHHhHHHHHHHHHHHHhccC-ccccccceee--eeheecchHHHHHHHHHHHhhhhH
Confidence             34456667788899999999999999998 5555555554  455668888999999999998743

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=99.95  E-value=1.9e-25  Score=203.50  Aligned_cols=328  Identities=13%  Similarity=0.059  Sum_probs=213.6

Q ss_pred             ccccchhhHHHHhhhhcCCchHHHHHHHHHHHHHhhh---hhh-----hhHHHHHHHHHHhhhhhhhhccchhhhhhccC
Q 014628            2 VGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGC---GSS-----FDFWSIAICRMLVGVGEASFISLAAPFIDDNA   73 (421)
Q Consensus         2 lg~~i~~~~~g~l~Dr~Grr~~~~~~~~~~~~~~~~~---~~~-----~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~   73 (421)
                      +++.+++++.|+++||+|||+.++.+.....++....   .+.     +.+..+++.|++.|++.+...+....+..|..
T Consensus        49 l~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  128 (396)
T TIGR00882        49 LFSILFQPLFGLISDKLGLKKHLLWIISGLLVLFAPFFIYVFGPLLQSNILVGAIVGGLYLGFVFSAGAGAIEAYIEKVS  128 (396)
T ss_pred             HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHhh
Confidence            4567899999999999999999988777665544332   111     22344566788899888888888877777753


Q ss_pred             CCCCchhHHHHHHHHHHHHhhhHHHhHHhhhhcchhHHHHHHHHHHHHHHHHHHHhcccccccccCCccccchhhhhhcc
Q 014628           74 PVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVS  153 (421)
Q Consensus        74 ~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~  153 (421)
                      +  +++..++......++|.++||.+++.+.+ .+||.+|++.+++.++..++.+...|+.+++    ++.+..    . 
T Consensus       129 ~--~~~~~~g~~~~~~~~g~~~g~~~~g~l~~-~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~----~-  196 (396)
T TIGR00882       129 R--NSNFEYGKARMFGCVGWALCASIAGILFS-IDPQIVFWLGSGFALILMLLLMFAKPKAPSS----ATVANA----L-  196 (396)
T ss_pred             h--hcccccchhhhhcccHHHHHHHHHhhhhc-cCchHHHHHHHHHHHHHHHHHHHhCCCCchh----hhhhcc----c-
Confidence            2  34567788888889999999999998865 5999999999888877766655544432111    000000    0 


Q ss_pred             cccccccCCcccccccchhhhhhhccccchhhhhhhhhhhhhhhHHhhcchhHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 014628          154 EGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYN  233 (421)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (421)
                                      +  .  + +++           ...++.++++++|.++...+..+.....+.....+.|.|+++
T Consensus       197 ----------------~--~--~-~~~-----------~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~y~~~  244 (396)
T TIGR00882       197 ----------------G--A--N-ASA-----------FSLKLALELFRQRKFWMFVLYVVGVACVYDVFDQQFANFFTS  244 (396)
T ss_pred             ----------------c--c--c-cCC-----------CCHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                            0  0  0 000           001235667788888776666555555566666677888777


Q ss_pred             hhC---Cccchh-HHHhhhhHHHHHHhhhhhHHHhhhccccchhhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Q 014628          234 IYH---MSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGEL  309 (421)
Q Consensus       234 ~~~---~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  309 (421)
                      ..+   .+.... ....+..+...++.+..+++.||+++|     +.+.....+..+........++.+......++.+.
T Consensus       245 ~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~-----~~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~g~  319 (396)
T TIGR00882       245 FFATPQQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAK-----NALLIAGTIMSVRIIGSSFATTALEVVILKMLHAF  319 (396)
T ss_pred             hccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-----hhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence            653   222222 233455567777888999999999998     66655555544444444445555555555555555


Q ss_pred             HHHhccCchhhhhhcccCCchhhHHHHH-HHHHHHhhcccCcchhHHHhhhccccchhhhHHHHHHHHHHHH
Q 014628          310 LVFATQAPVNYVCLHSVKPSLRALSMAI-STVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFFLAAG  380 (421)
Q Consensus       310 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~  380 (421)
                      +..........+..+..+++.++++.+. .+.... +|+.++|.+.|++.|..| |...+.+.+++.++..+
T Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~at~~~~~~~~~~~-lg~~~~~~l~G~l~~~~G-~~~~f~~~~~~~~i~~~  389 (396)
T TIGR00882       320 EVPFLLVGCFKYITSQFDVRLSATIYLIGFQFAKQ-LAMIFLSTLAGNMYDSIG-FQGAYLVLGCIVLLFTL  389 (396)
T ss_pred             HHHHHHHHHHHHHHHhCCcceEEEeehHHHHHHHH-HHHHHHHHhHHHHHHhcc-cHHHHHHHHHHHHHHHH
Confidence            5444433444556666777777776666 444444 488999999999999876 77778777766554443

>TIGR00806 rfc RFC reduced folate carrier

Probab=99.94  E-value=3.4e-25  Score=194.90  Aligned_cols=325  Identities=10%  Similarity=0.022  Sum_probs=223.5

Q ss_pred             ccccchhhHHHHhhhhcCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhhhhhhhccchhhhhhccCCCCCchhH
Q 014628            2 VGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAW   81 (421)
Q Consensus         2 lg~~i~~~~~g~l~Dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~   81 (421)
                      .+|++++++.|+++||+|.|+++.++.+.+++.+++.++++++..+.+.|++.|+++|... +...++..|+|+++|+++
T Consensus        73 ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa~Sl~~L~i~R~llGvaEA~~~-A~~syI~~WfP~kER~ra  151 (511)
T TIGR00806        73 YSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLGTSVWHMQLMEVFYSVTMAARI-AYSSYIFSLVPPSRYQRA  151 (511)
T ss_pred             HHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHHHHHHH
Confidence            5789999999999999999999999999999999999999999999999999999999999 999999999999999999


Q ss_pred             HHHHHHHHHHHhhhHHHhHHhhhhcchhHHHHHHHH--HHHHHHHHHHHhcccccccccCCccccchhhhhhcccccccc
Q 014628           82 LSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEA--ILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEAS  159 (421)
Q Consensus        82 ~~~~~~~~~~G~~~g~~~~~~l~~~~~wr~~f~~~~--~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (421)
                      .++...+..+|.++++++++. ...+|||+.+.+.-  ..+...++++-+++|...+..--.++.+..  .....+.+..
T Consensus       152 tsi~~sg~~vG~~Ia~~L~ql-l~s~gWr~y~~Ln~Isl~s~~~a~~~a~~LP~~~~sl~f~~~~~~~--~~~~~~~~~~  228 (511)
T TIGR00806       152 AAYSRAAVLLGVFLSSVLGQL-LVTLGWISYSTLNIISLVFMTFSVFLALFLKRPKRSLFFNRLEDVR--GALPCELDQM  228 (511)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-HHhcCchhHHHHHHHHHHHHHHHHHHHHhCCCCchhhhhccccccc--cccccccccC
Confidence            999999999999999999999 55679997665542  223334444444555322210000000000  0000000000


Q ss_pred             cCCcccccccchhhhhhhccccchhhhhhhhhhhhhhhHHhhcchhHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhCCcc
Q 014628          160 NLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSN  239 (421)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (421)
                      .+    ++.     . +. ....+.......+..+.+++...++|.+....+-+.+...+++-+.+|....-++.....+
T Consensus       229 ~~----~~~-----~-~~-~~~~~~~~~~~~~~l~~~~~~~y~n~~vl~WSlWwa~a~~g~~qv~~Y~Q~LW~~v~~~~~  297 (511)
T TIGR00806       229 VP----GPG-----G-KL-EDYLGTCRDSFLVRMLSELVTIYRNPQLLLWSLWWVFNSAGYYLITYYVHTLWGTLDESLN  297 (511)
T ss_pred             CC----CCc-----c-cc-chhhhhhhhHHHHHHHHHHHHHhcCcchhhhhHHHHHHhhHHHHHHHHHHHHHHHcCCCcc
Confidence            00    000     0 00 0000011113345667788888899999888888888888888888877776655533221


Q ss_pred             -chhHHHhhhhHHHHHHhhhhhHHHhhhccccchhhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhccCch
Q 014628          240 -ADMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPV  318 (421)
Q Consensus       240 -~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (421)
                       .....-++..+.+.+..+..|++-.+..+.   ....+.+..++.+..++++...++.|...+...+.........+..
T Consensus       298 ~yNG~veA~~tllga~~a~~ag~~~~~w~~~---~~l~l~v~s~~~~gll~~m~~t~~Iw~~Y~~yvlf~~~y~flitia  374 (511)
T TIGR00806       298 KYNGAVDAASTLLGAITSFIAGFVNIRWARW---SKLLIAVVSAIQAGLVFWMSQSHDIWVLYVTYVLFRGIYQFLVPIA  374 (511)
T ss_pred             ccCCHHHHHHHHHHHHHHHHHHhhcCCchhh---HHHHHHHHHHHHHHHhhhhhcccchHHHHHHHHHHHHHHHHHHHHH
Confidence             112233555566677788888874444221   0133444555556666777778899988888888888888888888


Q ss_pred             hhhhhcccCCchhhHHHHHHHHHHHh
Q 014628          319 NYVCLHSVKPSLRALSMAISTVSIHI  344 (421)
Q Consensus       319 ~~~~~~~~~~~~~~~~~g~~~~~~~~  344 (421)
                      ..-++.....+.-|...|+++...-.
T Consensus       375 ~~~iA~~L~~~~~aLvFGiNtfvAl~  400 (511)
T TIGR00806       375 TFQIASSLSKELCALVFGINTFVATA  400 (511)
T ss_pred             HHHHHHHhcccceEEEEecHHHHHHH
Confidence            88888888788889999998654444

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=99.94  E-value=1.3e-24  Score=200.88  Aligned_cols=343  Identities=13%  Similarity=0.050  Sum_probs=204.3

Q ss_pred             chhhHHHHhhhh-cCCchHHHHHHHHHHHHHhhhhhhhhHHH-HHHHHHHhhhhhhhhccchhhhhhccCCCC--CchhH
Q 014628            6 VASPIFASLAKS-HNPFRLIGVGLSVWTFATAGCGSSFDFWS-IAICRMLVGVGEASFISLAAPFIDDNAPVP--QKTAW   81 (421)
Q Consensus         6 i~~~~~g~l~Dr-~Grr~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~--~r~~~   81 (421)
                      +..+++|+++|| +||||+++++.+++.++++.++++++... ++++|+++|+|.|...|...+++.|.+|++  +|+++
T Consensus        65 ~~~~~~G~laDr~~G~r~~~~~g~~~~~~g~~~~~~~~~~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~  144 (489)
T PRK10207         65 GLISIGGYVGDHLLGTKRTIVLGAIVLAIGYFMTGMSLLKPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPRLDGA  144 (489)
T ss_pred             HHHhhHHHhhhhccchHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHhccccccCCHHHHHHHhcCCCchhhhcc
Confidence            456789999999 99999999999999999999999877554 557999999999999999999999999887  45779


Q ss_pred             HHHHHHHHHHHhhhHHHhHHhhhhcchhHHHHHHHHHHHHHHHHHHHhcccccccccC-Cccccchhhhhhccccccccc
Q 014628           82 LSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFA-PAESGKAQVVASVSEGSEASN  160 (421)
Q Consensus        82 ~~~~~~~~~~G~~~g~~~~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  160 (421)
                      +++++.+.++|..+||.+++++.++.|||+.|++.++ +++..++.+...++..++.+ ++++.+.+...........  
T Consensus       145 ~~~~~~~~nig~~~g~~l~g~l~~~~gw~~~F~i~~i-~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~--  221 (489)
T PRK10207        145 FTLFYMSINIGSLISLSLAPVIADKFGYSVTYNLCGA-GLIIALLVYFACRGMVKDIGSEPDHKPMSFSKLLLVLLGS--  221 (489)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHH-HHHHHHHHHHHcchhhcccCCCCCccchhhhhHHHHHHHH--
Confidence            9999999999999999999999999999999999755 44444444444443322211 1101000000000000000  


Q ss_pred             CCcccccccchhhhhhhccccchh-------hhhhhhhhhhhhhHHhhcchhHHHHHHH--HHHHHHHHHHHHHHhhHHH
Q 014628          161 LNDHVSEDISDQASERSIKSIGES-------RFLNQLSQFSQDTKVLLQEKVYVVNVLG--YIAYNFVIGAYSYWGPKAG  231 (421)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~  231 (421)
                          ..-...-....+........       ...-...+. ...++.+|+|.+....+.  .......+....+.++.+.
T Consensus       222 ----~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~~~-~~~~~~~r~r~~~~~~l~~~~~~f~~~~~q~~~~l~l~~  296 (489)
T PRK10207        222 ----VVMIFVCAWLMHNVEVANLVLIVLSIVVTIIFFREA-FKLDKTGRNKMFVAFVLMLEAVVFYILYAQMPTSLNFFA  296 (489)
T ss_pred             ----HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHH
Confidence                00000000000000000000       000000000 001134455554433322  2233333444446666666


Q ss_pred             HHhhCCc-----cchhHHHhhhhHHHHHHhhhhhHHHhhhccccc--hhhHHHHHHHHHHHHHHHHH-----Hhh-----
Q 014628          232 YNIYHMS-----NADMMFGGVTIVCGIVGTISGGFILDQMGATIS--NAFKLLSAATFLGAISCLTA-----FCL-----  294 (421)
Q Consensus       232 ~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~-----~~~-----  294 (421)
                      ++..+.+     .....+..+..+..++..++.+++.||+++|+.  +....+..+.++....++.+     ...     
T Consensus       297 ~~~~~~~~~G~~i~~~~~~~~n~~~iii~~pl~~~l~~rl~~r~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~  376 (489)
T PRK10207        297 INNVHHEILGFSINPVSFQALNPFWVVVASPILAGIYTHLGSKGKDLSMPMKFTLGMFLCSLGFLTAAAAGMWFADAQGL  376 (489)
T ss_pred             HHhccccccceEECHHHHHhHhHHHHHHHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCc
Confidence            6432222     112233334445566777788899999988742  11112233333333222211     111     


Q ss_pred             hhhHHHHHHHHHHHHHHHhccCchhhhhhcccCCchhhHHHHHHHHHHHhhcccCcchhHHHh
Q 014628          295 SSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVL  357 (421)
Q Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l  357 (421)
                      .+.+..+...++.+.+.....++....+.+..|++.++.++|+.+...+. |+.++..+....
T Consensus       377 ~s~~~~i~~~~l~g~Ge~~~~~~g~~~~~~~aP~~~~g~~~g~~~l~~~i-g~~lg~~l~~~~  438 (489)
T PRK10207        377 TSPWFIVLVYLFQSLGELFISALGLAMIAALVPQHLMGFILGMWFLTQAA-AFLLGGYVATFT  438 (489)
T ss_pred             cCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhChHHHHHHHHHHHHHHHHH-HHHHHHHHHHHh
Confidence            23455666777888888899999999999999999999999999766555 777776555443

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=99.94  E-value=4.1e-24  Score=197.65  Aligned_cols=373  Identities=12%  Similarity=0.017  Sum_probs=220.2

Q ss_pred             cccchhhHHHHhhhh-cCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhhhhhhhccchhhhhhccCCCCC---c
Q 014628            3 GLLVASPIFASLAKS-HNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQ---K   78 (421)
Q Consensus         3 g~~i~~~~~g~l~Dr-~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~---r   78 (421)
                      ++.++++++|+++|| +|||+++.++.++.+++.++.+++++++.+++.|++.|+|.|...+...++++|++|+++   |
T Consensus        60 ~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r  139 (475)
T TIGR00924        60 LVYLLTSVGWWFGDRVWGTKKTMVLGGIVLMLGHFMLAMSIYPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRR  139 (475)
T ss_pred             HHHHHHhhHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcccc
Confidence            567889999999999 899999999999999999999999999999999999999999999999999999998764   8


Q ss_pred             hhHHHHHHHHHHHHhhhHHHhHHhhhhcchhHHHHHHHHHHHHHHHHHHHhcccccccccCCccccchhhhhhccccccc
Q 014628           79 TAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEA  158 (421)
Q Consensus        79 ~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (421)
                      ++++++++.+.++|.++||.+++++.+++|||+.|++.++..++.. +.++..++..++.++++++  ...++.......
T Consensus       140 ~~~~~~~~~~~niG~~ig~~l~g~l~~~~g~~~~f~~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~  216 (475)
T TIGR00924       140 DGGFTLFYMSINIGSFISPLLAGVIAENYGYHVGFNLAAVGMVIGL-LTFFAGRHMLRDIGSVPDP--LSGQGKTYGKLL  216 (475)
T ss_pred             cceehhHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHH-HHHHHcccccccCCCCCCC--cchhhhhhHHHH
Confidence            8899999999999999999999999998999999999886544443 3333333322211110000  000000000000


Q ss_pred             ccCCcccccccchhhhhhhccccchhh-------hh---hhhhhhhhhhHHhhcchhHHHHHHHHHHHHHHHHHHHHHhh
Q 014628          159 SNLNDHVSEDISDQASERSIKSIGESR-------FL---NQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGP  228 (421)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (421)
                      ..................+........       ..   ....+...+..+..|...+..+.+...++...+....+.++
T Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~Q~~s~l~  296 (475)
T TIGR00924       217 LALLAALALVFFCAWLMHHVVIANILLMTVTLAVIIFFFRLAFKPRLDAVARNKMYAYIVLFLEAVVFWVLYAQMPTSLN  296 (475)
T ss_pred             HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence            000000000000000000000000000       00   00000000000111222333344444455555555566677


Q ss_pred             HHHHHhhCCcc-----chhHHHhhhhHHHHHHhhhhhHHHhhhccccc--hhhHHHHHHHHHHHHHHHHHHh--------
Q 014628          229 KAGYNIYHMSN-----ADMMFGGVTIVCGIVGTISGGFILDQMGATIS--NAFKLLSAATFLGAISCLTAFC--------  293 (421)
Q Consensus       229 ~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~--------  293 (421)
                      .+.++..+.+.     ....+.++..+..++..++..++..|..||..  +...-+..+.++.+.++.....        
T Consensus       297 l~~~~~~~~~~~~~~ip~~~~~~~n~~~iil~~p~~~~~~~~l~~~~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~  376 (475)
T TIGR00924       297 FFADNNMHHEMLGMSVPVIWFQSLNPFWVVVGSPVLAMIWTRLGRKGKDPTTPLKFTLGMLFCGASFLTFAASIWFADAG  376 (475)
T ss_pred             HHHHHhccccccceEECHHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Confidence            77666433321     12234455555555555554454445544311  1111123444444444333321        


Q ss_pred             -hhhhHHHHHHHHHHHHHHHhccCchhhhhhcccCCchhhHHHHHHHHHHHhhcccCcchhHHHhhhccccchhhhHHHH
Q 014628          294 -LSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALT  372 (421)
Q Consensus       294 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~  372 (421)
                       ..+.++.+...++.+.+.....+....+..+..|++.||+.+|+....... |..+++.+.....+..+ +...+...+
T Consensus       377 ~~~s~~~~i~~~~~~~~ge~~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~-g~~l~~~~~~~~~~~~~-~~~~~~~~~  454 (475)
T TIGR00924       377 GLTSPWFMVLIYLFQTLGELMISPLGLSWWTKIAPQRLMGQMLGMWFLAQAM-GSLLGGYLATFGAVPQG-VTGVFGKIG  454 (475)
T ss_pred             CccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcccc-hhhHHHHHH
Confidence             246677778888889999999999999999999999999999999655544 88888877776666433 444444444


Q ss_pred             HHHHHHHH
Q 014628          373 SIFFLAAG  380 (421)
Q Consensus       373 ~~~~~~~~  380 (421)
                      ...++..+
T Consensus       455 ~~~~~~~~  462 (475)
T TIGR00924       455 LVTLLVGV  462 (475)
T ss_pred             HHHHHHHH
Confidence            44443333

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=99.94  E-value=5.8e-24  Score=194.94  Aligned_cols=345  Identities=12%  Similarity=0.064  Sum_probs=217.9

Q ss_pred             ccccchhhHHHHhhhhcCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhhhhhhhccchhhhhhccCCCCCchhH
Q 014628            2 VGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAW   81 (421)
Q Consensus         2 lg~~i~~~~~g~l~Dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~   81 (421)
                      ++.++..++.|+++|.||||.+++.+.++..+|+++++.++|...++++..+.|+|.|... .....++|..|.|.|...
T Consensus        89 l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~atA~~~~~~iag~~l~GvgaG~~~-~~~~~isEl~p~k~R~~~  167 (599)
T PF06609_consen   89 LASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCATAQNMNTFIAGMVLYGVGAGVQE-LAALAISELVPNKWRGLG  167 (599)
T ss_pred             HHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHhhcCCcHHHHHHHHHHHHHhhHHHH-HHHHHHHHhcccchhhhH
Confidence            4567889999999999999999999999999999999999999999999999999987665 456668999999999988


Q ss_pred             HHHHHHHHHHHhhhHHHhHHhhhhcchhHHHHHHHHHHHHHHHHHHHhc-ccccccccCCccccchhhhhhcccccccc-
Q 014628           82 LSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVI-KPLQLKGFAPAESGKAQVVASVSEGSEAS-  159 (421)
Q Consensus        82 ~~~~~~~~~~G~~~g~~~~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~-~p~~~~~~~~~~~~~~~~~~~~~~~~~~~-  159 (421)
                      .++......+....++.++..+..+.+|||.|++..+...+..++.+++ .|.+.+..+.++..++.    ...+++.. 
T Consensus       168 ~~~~~~~~i~~~~~~~~ia~~~~~~~~WRw~~~~~~i~~~i~~vl~~~fY~PP~~~~~~~~~~s~~~----~l~~lD~IG  243 (599)
T PF06609_consen  168 LAIASIPFIITTWISPLIAQLFAAHSGWRWIFYIFIIWSGIALVLIFFFYFPPPRAQLHGRKLSKRE----QLKELDWIG  243 (599)
T ss_pred             hHHHHHHHHhhhcccHHHHHHhccCCCcchHHHHHHHHHHHHHHHHHHHhCCCchhhhccccCcHHH----HHHHhhHHH
Confidence            8877776666666788888777777799999999988776655544433 34322111111111110    00111000 


Q ss_pred             ------------------cC--Ccccccccchhhhhhhccccchhhhhhhh---hhhhhhhHHhhcc-hhHHHHHHHHHH
Q 014628          160 ------------------NL--NDHVSEDISDQASERSIKSIGESRFLNQL---SQFSQDTKVLLQE-KVYVVNVLGYIA  215 (421)
Q Consensus       160 ------------------~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~-~~~~~~~~~~~~  215 (421)
                                        ..  ......+.-...-.--- --.---.++.+   ++..- ..+++++ |.+...++..++
T Consensus       244 ~~L~~~Gl~LfLlgl~wgG~~~~~W~Sa~VIa~lviG~~-~Lv~F~~wE~~~~~~~Pl~-P~~Lf~~~r~~~~~lvi~fi  321 (599)
T PF06609_consen  244 IFLFIAGLALFLLGLSWGGYPYYPWKSAHVIAPLVIGFV-LLVAFVVWEWFGAPKDPLF-PHRLFKDRRGFAALLVISFI  321 (599)
T ss_pred             HHHHHHHHHHHHHHHhccCCCCCCCCCccchhhHHHHHH-HHHHHHHhhhhccCCCCcC-CHHHhccchHHHHHHHHHHH
Confidence                              00  00000000000000000 00000000000   11122 2356676 556666666677


Q ss_pred             HHHHHHHHHHHhhHHHHHhhCCccc----hhHHHhhhhHHHHHHhhhhhHHHhhhccccchhhHHHHHHHHHHHHHHHHH
Q 014628          216 YNFVIGAYSYWGPKAGYNIYHMSNA----DMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTA  291 (421)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (421)
                      ....++....+.|......++.++.    ..........+..++.++.+.+..+++|-+    ..++.+..+..+.+..+
T Consensus       322 ~G~~~~s~~~l~p~~~~~vf~~d~~~~~~~~~~s~~~~fg~~~g~~i~g~l~~~ir~~K----w~li~~~~~~ta~~Gam  397 (599)
T PF06609_consen  322 SGMNFFSVNILWPQQVVNVFGSDPISITEIGWISSPVGFGSCAGAVILGLLFSKIRHIK----WQLIFGSVLMTAFCGAM  397 (599)
T ss_pred             HHHHHHHHHHHHHHHHhhhccCCCcccceeehhhhhHHHHHHHHHHHHHHHHHHccchh----HHHHHHHHHHHHHHHHH
Confidence            7777888888888888877766642    123345566777788888899988887542    33333333333332222


Q ss_pred             --HhhhhhHHHHHHHHHHHHHHHhccCchhhhhhcccCCchhhHHHHHHHHHHHhhcccCcchhHHHhh
Q 014628          292 --FCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQ  358 (421)
Q Consensus       292 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~  358 (421)
                        .-.++....+...++.+++.+....+.....+-..|+++.+++.|+. ...+.+|+.+|..+...+.
T Consensus       398 a~~~~~n~~~~i~~~~l~g~giG~~~~~~~~~~ql~~p~~~ig~a~gL~-~s~R~~GGsIg~aIy~~I~  465 (599)
T PF06609_consen  398 AAVRPDNKNAAIAFLVLAGFGIGGILVPAIVIAQLIVPDEDIGTATGLT-GSIRSIGGSIGYAIYNAIF  465 (599)
T ss_pred             HHccCCCcchHHHHHHHHHHhHHHHHHHHHHeeEeeeCchHHHHHHHHH-HHHHHHhhHHHHHHHHHHH
Confidence              22334444556677778888777777777777788999999999999 4555557777766664443

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=99.93  E-value=1.1e-23  Score=176.30  Aligned_cols=319  Identities=13%  Similarity=0.054  Sum_probs=241.0

Q ss_pred             ccccchhhHHHHhhhhcCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhhhhhhhccchhhhhhccCCCCCchhH
Q 014628            2 VGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAW   81 (421)
Q Consensus         2 lg~~i~~~~~g~l~Dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~   81 (421)
                      +...+.+++..+++.|+|.++.+..++++.+++.++-... +.+.++.+-.+.|.|.+......+++|.+.+|+| -+..
T Consensus        58 l~fg~~ap~a~~Lar~~g~er~l~~~Llli~~G~~iR~~~-~~~~L~~gt~l~G~gIav~nVLLPslIK~~Fpk~-~~~m  135 (395)
T COG2807          58 LAFGLFAPAAPRLARRFGEERSLFLALLLIAAGILIRSLG-GLPLLFLGTLLAGAGIAVINVLLPSLIKRDFPKR-VGLM  135 (395)
T ss_pred             HHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHhhHHHHHHhhhHHHHhhcccc-hhhH
Confidence            3566788999999999999999999999999999998887 7888899999999999999999999999999876 8999


Q ss_pred             HHHHHHHHHHHhhhHHHhHHhhhhcc-hhHHHHHHHHHHHHHHHHHHHhcccccccccCCccccchhhhhhccccccccc
Q 014628           82 LSMFYMCIPTGVALGYVYGGVVGSHL-NWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASN  160 (421)
Q Consensus        82 ~~~~~~~~~~G~~~g~~~~~~l~~~~-~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (421)
                      +++|....++|..+++.+.-.+.++. |||......+.++++..+.++   |...+.+....+.+.              
T Consensus       136 tglYs~sl~~~aaLaa~lavpla~~~~gW~~aL~~WAl~allAl~~Wl---Pq~~r~~~~~~~~~~--------------  198 (395)
T COG2807         136 TGLYSTSLGAGAALAAALAVPLAQHSGGWRGALGFWALLALLALLIWL---PQALREQAASIATKL--------------  198 (395)
T ss_pred             HhHHHHHHHHHHHHHhhhhhHHHHhhccHHHHHHHHHHHHHHHHHHHh---hhccccccccccccc--------------
Confidence            99999999999999999999998887 799999999988777666554   442221101111000              


Q ss_pred             CCcccccccchhhhhhhccccchhhhhhhhhhhhhhhHHhhcchhHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhCCccc
Q 014628          161 LNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNA  240 (421)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (421)
                                                        .+...++|+|.-|.+.+.+.+.+..+|....|+|.++.|.+-.+.+
T Consensus       199 ----------------------------------~~~~~vw~~~~aW~vtLfmGlqS~~~Y~~~~WLP~ili~~G~sa~~  244 (395)
T COG2807         199 ----------------------------------VSVRKVWRSPLAWQVTLFMGLQSLLYYIVIGWLPAILIDRGLSAAE  244 (395)
T ss_pred             ----------------------------------ccccccccCchhHHHHHHHHhhHHHHHHHHHHHHHHHHHcCCCHHH
Confidence                                              1223577999999999999999999999999999999996544444


Q ss_pred             hhHHHhhhhHHHHHHhhhhhHHHhhhccccchhhHHHHHHHHHHHHHHHHHHhhh--hhHHHHHHHHHHHHHHHhccCch
Q 014628          241 DMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLS--SLYGFLALFTVGELLVFATQAPV  318 (421)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~  318 (421)
                      +..+.++..+.+++..+....+.+|...++    ...+....+..+..+-+.+.+  .++.+   ..+.|++.+..++..
T Consensus       245 aG~llsl~~l~~~~~~ll~P~la~R~~n~r----~~~~~~~~~~l~G~~G~~~~P~~~~~lw---~~llG~G~G~~F~la  317 (395)
T COG2807         245 AGSLLSLMQLAQLPTALLIPLLARRSKNQR----PLVVLALLLMLVGLVGLLLAPGQLPILW---ALLLGLGQGGAFPLA  317 (395)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHhcccc----hHHHHHHHHHHHHHHHHHHhhhhHHHHH---HHHHhCccchHHHHH
Confidence            446667888899999999999999854442    333333333333333222222  22222   466677777777777


Q ss_pred             hhhhhcccCC-chhhHHHHHHHHHHHhhcccCcchhHHHhhhccccchhhhHHHHHHHHHHHHH
Q 014628          319 NYVCLHSVKP-SLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFFLAAGI  381 (421)
Q Consensus       319 ~~~~~~~~~~-~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~  381 (421)
                      ...+.+..++ +..++-.|+.+...+.+. ..||.++|++.|..|+|...+.....+.+...+.
T Consensus       318 L~li~~rs~~a~~Aa~LSgmaQg~GYllA-a~GP~l~G~lhDa~gsw~~~~~~l~~~~i~m~i~  380 (395)
T COG2807         318 LTLILLRSSDAAIAAALSGMAQGVGYLLA-AFGPWLFGFLHDATGSWSAPLVLLALATLLMLIF  380 (395)
T ss_pred             HHHHHhhcCChHHHHHHHHHhhhhhHHHH-hhhhhhHhHHHHhcCChHHHHHHHHHHHHHHHHH
Confidence            7777666554 667777788776666644 6699999999999999988777766655444433

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=99.92  E-value=1.4e-22  Score=184.31  Aligned_cols=316  Identities=11%  Similarity=-0.038  Sum_probs=206.2

Q ss_pred             chhhHH-HHhhhhcCCchHHHHHHHHH-HHHHhhhh---hhhh-HHHHHHHHHHhhhhhhhhccchhhhhhccCCCCCch
Q 014628            6 VASPIF-ASLAKSHNPFRLIGVGLSVW-TFATAGCG---SSFD-FWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKT   79 (421)
Q Consensus         6 i~~~~~-g~l~Dr~Grr~~~~~~~~~~-~~~~~~~~---~~~~-~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~   79 (421)
                      +.+|++ ++..||+||||..++.+.+. .......+   ...+ ...++..-++.++..+...+...++..|..++++++
T Consensus        53 l~~p~~~~~~~~~~g~r~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~~~  132 (390)
T TIGR02718        53 LWAPLVDNWWSWRLGRRRSWVLPMQCLVSACLASLALVGPDVAGAGWAVGLLACASLASATQDIATDGMAAEHFNGRTLA  132 (390)
T ss_pred             HHHHHHhccccccCCcchhHHHHHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhh
Confidence            345555 44677789999875555332 21121111   2222 334445556666777777788888888999888889


Q ss_pred             hHHHHHHHHHHHHhhhHHHhHHhhhhcchhHHHHHHHHHHHHHHHHHHHhcccccccccCCccccchhhhhhcccccccc
Q 014628           80 AWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEAS  159 (421)
Q Consensus        80 ~~~~~~~~~~~~G~~~g~~~~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (421)
                      ...+....+..+|.++|+...+++.++.|||..|++.+++.++..+..++..|+.+++   +++++ .            
T Consensus       133 ~~~~~~~~g~~lG~~~g~~~~~~l~~~~gw~~~f~~~a~l~~~~~~~~~~~~~~~~~~---~~~~~-~------------  196 (390)
T TIGR02718       133 KGNAVQIAGVMIGFFGGGAGTLVLFGKFGQRPAFLLVACVPLASLVCVLWLKDRAVAS---PEAPL-A------------  196 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHcCCCCcCc---cccch-h------------
Confidence            8999999999999999999999999999999999999988777666655554331100   00000 0            


Q ss_pred             cCCcccccccchhhhhhhccccchhhhhhhhhhhhhhhHHhhcchhHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhCCcc
Q 014628          160 NLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSN  239 (421)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (421)
                                                       ...+.++++|+|.++......++..........+.+.|++| .+.++
T Consensus       197 ---------------------------------~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~-~G~s~  242 (390)
T TIGR02718       197 ---------------------------------RRASLFRFFRRPLAWSLLALALLSAMTAVSGFGLSKLYLVD-AGWPL  242 (390)
T ss_pred             ---------------------------------hHHHHHHHHcCcCHHHHHHHHHHHHHHHHHHHHHhhHHHHh-cCCCH
Confidence                                             01235567788888777776677777677777788888887 47776


Q ss_pred             chhHHH-hhhh-HHHHHHhhhhhHHHhhhccccchhhHHHHHHHHHHHHHHHHHHhh------hhhHHHHHHHHHHHHHH
Q 014628          240 ADMMFG-GVTI-VCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCL------SSLYGFLALFTVGELLV  311 (421)
Q Consensus       240 ~~~~~~-~~~~-~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~  311 (421)
                      ...... .... ...+++.++.|++.||++++     +.+..+..+.....+.....      .+.........+.++..
T Consensus       243 ~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~-----~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (390)
T TIGR02718       243 EWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLW-----RTFILGVGLAGSLALLWFAQAAFWLAPGIAVAWSCSAFGSLIT  317 (390)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHH-----HHHHHHHHHHHHHHHHHHHHHHcccCCcHHHHHHHHHHHHHHH
Confidence            554332 3333 45667788999999999987     55554443332222211111      11222222233334445


Q ss_pred             HhccCchhhhhhcccCC-chhhHHHHHHHHHHHhhcccCcchhHHHhhhccccchhhhHHHHHHHHHH
Q 014628          312 FATQAPVNYVCLHSVKP-SLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFFLA  378 (421)
Q Consensus       312 ~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~  378 (421)
                      +...+.......+..++ +.+++.+++.+...+. |..++|.+.|.+.|..| +...+...+.+.+++
T Consensus       318 g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l-g~~~g~~~~G~l~~~~G-~~~~f~~~~~~~l~a  383 (390)
T TIGR02718       318 GITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDL-GELIASSIAGYLTDRFG-YAGGFLSGTVLAVLA  383 (390)
T ss_pred             HHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHc-cHHHHHHHHHHHHHH
Confidence            55656666676677766 8899999999777666 99999999999999876 666666665554443

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=99.92  E-value=6.2e-22  Score=180.59  Aligned_cols=337  Identities=15%  Similarity=0.157  Sum_probs=252.7

Q ss_pred             ccchhhHHHHhhhhcCCchHH-HHHHHHHHHHHhhhhhh-h-hHHHHHHHHHHhhhhhhhhccchhhhhhccCCCCCc--
Q 014628            4 LLVASPIFASLAKSHNPFRLI-GVGLSVWTFATAGCGSS-F-DFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQK--   78 (421)
Q Consensus         4 ~~i~~~~~g~l~Dr~Grr~~~-~~~~~~~~~~~~~~~~~-~-~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r--   78 (421)
                      .++..|+.|.++|+-|+||.+ .+..++..+++.+..+. + +++...+.-++.-++.+.......+++.|..+++++  
T Consensus        83 ~all~P~lGa~aD~~~~Rk~~l~~~~~~~~~~~~~l~~v~~~~~~~~~~l~iia~v~~~~~~vfyna~LP~la~~~~~~~  162 (477)
T PF11700_consen   83 QALLAPFLGAIADYGGRRKRFLLIFTLLGVLATALLWFVSPGQWWLALVLFIIANVGYEASNVFYNAYLPDLARPEPRVR  162 (477)
T ss_pred             HHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCChhhh
Confidence            456789999999999877764 44555555666666663 3 344444555555667777788889999999999888  


Q ss_pred             ------------------------hhHHHHHHHHHHHHhhhHHHhHHhhhh--------cchhHHHHHHHHHHHHHHHHH
Q 014628           79 ------------------------TAWLSMFYMCIPTGVALGYVYGGVVGS--------HLNWRYAFWGEAILMLPFAVL  126 (421)
Q Consensus        79 ------------------------~~~~~~~~~~~~~G~~~g~~~~~~l~~--------~~~wr~~f~~~~~~~~~~~~~  126 (421)
                                              ++..+.-.....+|.++.-.+.-.+..        ..+-|..+.+.++.-++..+.
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l~~~~~~~~~~~~~~~~r~~~~~~a~ww~vfsiP  242 (477)
T PF11700_consen  163 AAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLISLLLVISPGSTASNTWAIRVAFLIVALWWLVFSIP  242 (477)
T ss_pred             hhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccchhhhHHHHHHHHHHHHHHHH
Confidence                                    899998888888888887776655431        234588899998888888888


Q ss_pred             HHhcccccccccCCccccchhhhhhcccccccccCCcccccccchhhhhhhccccchhhhhhhhhhhhhhhHHhhcchhH
Q 014628          127 AFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVY  206 (421)
Q Consensus       127 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (421)
                      .++..|+.++.+..++..+.                                       ....+++.++.++++.+.|..
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~---------------------------------------~~~g~~~l~~t~k~~~~~~~~  283 (477)
T PF11700_consen  243 LFLWLPDRPGPRPLPSGSSY---------------------------------------LRFGFKRLWRTFKEIRKLRQL  283 (477)
T ss_pred             HHHhCCCCCCCCCCCcchhH---------------------------------------HHHHHHHHHHHHHHHHhChHH
Confidence            88877765432111111110                                       114556667788888899999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHHHHhhCCccchh-HHHhhhhHHHHHHhhhhhHHHhhhccccchhhHHHHHHHHHHH
Q 014628          207 VVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGA  285 (421)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~  285 (421)
                      ...+++++++.-+...+......|..+..+++..+. .+..+..+.+++|.++.+++.||+|.|..   +.+........
T Consensus       284 ~~fLia~~l~~dg~~ti~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~---~~l~~~l~~~~  360 (477)
T PF11700_consen  284 FLFLIAYFLYSDGVNTIISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTK---RTLLISLILWI  360 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchh---HHHHHHHHHHH
Confidence            999999999999999999999999999999997666 44466779999999999999999998743   23333333332


Q ss_pred             HHHHHHHh--------hhhhHHHHHHHHHHHHHHHhccCchhhhhhcccCCchhhHHHHHHHHHHHhhcccCcchhHHHh
Q 014628          286 ISCLTAFC--------LSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVL  357 (421)
Q Consensus       286 ~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l  357 (421)
                      +..+....        .++.+.+.+...+.|.+.+..++..-++..+..|+++.+...|++...... .+.+||.+.|.+
T Consensus       361 ~i~~~g~~G~~~~~~g~~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~-ss~lGPll~g~i  439 (477)
T PF11700_consen  361 IIPLYGLFGFWPSFFGLKSPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKA-SSWLGPLLFGLI  439 (477)
T ss_pred             HHHHHHHHHhhhcccCcccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence            22222222        456677777888899999999999999999999999999999999655555 889999999999


Q ss_pred             hhccccchhhhHHHHHHHHHHHHHHH
Q 014628          358 QDHVNNWRKTTLALTSIFFLAAGIWF  383 (421)
Q Consensus       358 ~~~~g~~~~~~~~~~~~~~~~~~~~~  383 (421)
                      .+..|+.+.++....++.+++.+++.
T Consensus       440 ~~~tg~~r~g~~~l~~lf~~gl~ll~  465 (477)
T PF11700_consen  440 TDATGSQRYGFLFLLVLFLIGLILLF  465 (477)
T ss_pred             HHHhCCchhHHHHHHHHHHHHHHHHh
Confidence            99999888888888877777766654

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>PTZ00207 hypothetical protein; Provisional

Probab=99.91  E-value=7.5e-23  Score=188.98  Aligned_cols=372  Identities=11%  Similarity=-0.011  Sum_probs=233.9

Q ss_pred             chhhHHHHhhhhcCCchHHHHHHHHHHHHHhhhhhh------hhHHHHHHHHHHhhhhhhhhccchhhhhhccCCCCCch
Q 014628            6 VASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSS------FDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKT   79 (421)
Q Consensus         6 i~~~~~g~l~Dr~Grr~~~~~~~~~~~~~~~~~~~~------~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~   79 (421)
                      +++++.|++.||+|||+++.++.+++.++.++++++      ++++.+++.|++.|+|.+...+.....+.+|+| ++||
T Consensus        76 ~~~lp~G~L~Dr~G~R~vllig~ll~~iG~ll~ala~~~~i~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~RG  154 (591)
T PTZ00207         76 YFLLPYSFIYDYLGPRPIFVLSMTVFCLGTLLFALTFQEVIEGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFP-SNRG  154 (591)
T ss_pred             HHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-hhhH
Confidence            466789999999999999999999999999999997      689999999999999999999999999999997 6799


Q ss_pred             hHHHHHHHHHHHHhhh-HHHhHHhhhhcchhHHHHHHHHHHHHHHHHHHHhcccccc--ccc-CCc--cccchhhhh---
Q 014628           80 AWLSMFYMCIPTGVAL-GYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQL--KGF-APA--ESGKAQVVA---  150 (421)
Q Consensus        80 ~~~~~~~~~~~~G~~~-g~~~~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p~~~--~~~-~~~--~~~~~~~~~---  150 (421)
                      ++.++...+.++|.++ +++..+++.  .+|+..|++.+++.++..++.+.+.++.+  ++. ++.  ++++....+   
T Consensus       155 ~a~Gi~~~~~gLGsaI~~~l~~~l~~--~~~~~~fl~l~vl~~vv~ll~~~~vr~p~~~~~~~~~~~~~~~~~~~~~~~~  232 (591)
T PTZ00207        155 AVVAIMKTFTGLGSAILGSIQLAFFS--DNTSAYFFFLMSFALVVGILAIVFMRLPPFHLTGYQEKHLDEEEKAQRLMRK  232 (591)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH--HhHHHHHHHHHHHHHHHHHHHHhheeCCcchhhcccccCCCHHHHHHHhhhh
Confidence            9999999999999976 555555554  36999999999998888877777663322  211 110  000000000   


Q ss_pred             -----h-----cc---------------------------------------------c-------ccccccCCcccccc
Q 014628          151 -----S-----VS---------------------------------------------E-------GSEASNLNDHVSED  168 (421)
Q Consensus       151 -----~-----~~---------------------------------------------~-------~~~~~~~~~~~~~~  168 (421)
                           +     ..                                             .       ..+...++++.+.+
T Consensus       233 ~~y~~q~~p~~~f~~~~~i~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~v~~~lll~~p~l~ip~~~~~~~~~~~~~~~~  312 (591)
T PTZ00207        233 GVYLKQKAPMWRFVYGFVILIILIVFLPLQGALVAYLKLGSNFKVGFAVTVIVLTVIFPFMAFPLTTFDGKRPHDDSDGK  312 (591)
T ss_pred             hhhhhcCCCceehhhHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCcCCCcccc
Confidence                 0     00                                             0       00000000000000


Q ss_pred             cchhhh--hhhccccc---hhhhhhhhhhhhhhhHHhhcchhHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhCC-ccc--
Q 014628          169 ISDQAS--ERSIKSIG---ESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHM-SNA--  240 (421)
Q Consensus       169 ~~~~~~--~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--  240 (421)
                      ..+..+  .+..+.+.   ....+....+..+++.+.+++..+|.+....++.......+..++.++.+...+. ...  
T Consensus       313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~t~~q~l~~~d~Wll~~~~~cg~g~gl~~~~N~~qI~~sl~g~~~~~~~  392 (591)
T PTZ00207        313 AKEHVEAGEEVSAAEDKVVETDVDYIAPQFQETFIEGLKTARLWCLLWSIFCCVGAHFVIIFNARFIYTALAGEAPDDAL  392 (591)
T ss_pred             ccccccccccccccccccccccccCCCCCCcchHHHHHhchhHHHHHHHHHHhhCchheeeecHHHHHHHhcCCCCCccc
Confidence            000000  00000000   0000001011123677778899999999988888777777777888888887455 222  


Q ss_pred             hhHHHhhhhHHHHHHhhhhhHHHhhhccccc---hhhHH-HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhccC
Q 014628          241 DMMFGGVTIVCGIVGTISGGFILDQMGATIS---NAFKL-LSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQA  316 (421)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~---~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (421)
                      ...+.++.++.+.+|++..|++.....+|..   -.+.. +....+ ..+..+++...-+...+.+..++.+++.+..++
T Consensus       393 ~~~~vsL~si~~~~GRl~~g~~~~~~~~~~~~~r~prt~~l~~~~~-~~~~~lll~~~~p~~~L~~~~~lvg~~~G~~~~  471 (591)
T PTZ00207        393 NTLLTVLNGVGSAVGRLCMSYFEIWSQKRRAEDRVPITIALFIPSV-CIITMLTLFLTLPKAALPLPYFIAAFANGFMAA  471 (591)
T ss_pred             eeeehhhhhHHHHhhHHHHHHHHHHHHhhccccccchhHHHHHHHH-HHHHHHHHHHHCCccHhHHHHHHHHHHhhHhHH
Confidence            2236688889999999999998843333321   11122 222233 333333333222224667788888999999999


Q ss_pred             chhhhhhcccCCchhhHHHHHHHHHHHhhcccCc-chhHHHhhhccc------------cchhhhHHHHHHHHHHHHHHH
Q 014628          317 PVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPS-SPLVGVLQDHVN------------NWRKTTLALTSIFFLAAGIWF  383 (421)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~-~~~~g~l~~~~g------------~~~~~~~~~~~~~~~~~~~~~  383 (421)
                      .....+.|.+. ++-|+-.-+.. ...-+|..+- -.++|.++|+-.            -+..+|++++++.+.+.+...
T Consensus       472 ~~~~i~selFg-k~~g~~yN~~~-~a~pigs~~~n~~l~G~~Yd~ea~k~~~~~C~G~~C~~~~~~v~~~~~~~g~~~s~  549 (591)
T PTZ00207        472 TIALVTRTIFA-KDPAKHYNFCF-LGSVLSAIFLNRLLYGEWYTQQADKLGQDVCTERVCVVMPLAFLLGLSFLAFITST  549 (591)
T ss_pred             HHHHHHHHHhc-cchHHHhhHHh-HHHHHHHHHHHHHHHHHHHHHHHhhCCCCeeCCceeeHhHHHHHHHHHHHHHHHHh
Confidence            99999999988 77777766663 3333344432 446677776532            145677777777666665543

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=99.91  E-value=1.4e-21  Score=181.86  Aligned_cols=333  Identities=12%  Similarity=0.015  Sum_probs=187.8

Q ss_pred             hhhHHHHhhhh-cCCchHHHHHHHHHHHHHhhhhhhh-hHHHHHHHHHHhhhhhhhhccchhhhhhccCCCCC--chhHH
Q 014628            7 ASPIFASLAKS-HNPFRLIGVGLSVWTFATAGCGSSF-DFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQ--KTAWL   82 (421)
Q Consensus         7 ~~~~~g~l~Dr-~Grr~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~--r~~~~   82 (421)
                      ..+++|+++|| +|||+++..+.++.+++..++++++ +.+.+++.|+++|++.|...+...+++.|++|+++  |+.++
T Consensus        73 ~~~~~G~LaDr~~G~r~~~~~g~~~~~ig~~l~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~  152 (500)
T PRK09584         73 LVAIGGWLGDKVLGTKRVIMLGAIVLAIGYALVAWSGHDAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPRLDGAF  152 (500)
T ss_pred             HHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchhhhhcc
Confidence            34689999999 5999999999999999999998875 56677789999999999999999999999998654  45688


Q ss_pred             HHHHHHHHHHhhhHHHhHHhhhhcchhHHHHHHHHHHHHHHHHHHHhcccccccccC-Cccccchhhhhhcc--------
Q 014628           83 SMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFA-PAESGKAQVVASVS--------  153 (421)
Q Consensus        83 ~~~~~~~~~G~~~g~~~~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~-~~~~~~~~~~~~~~--------  153 (421)
                      ++++.+.++|..+||.+++++.+++|||+.|++.++..++..+..++. ++..++.. ++++++.+......        
T Consensus       153 ~~~~~~~~iG~~~gp~i~g~l~~~~g~~~~F~i~~i~~~i~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (500)
T PRK09584        153 TMYYMSINIGSFFSMLATPWLAAKYGWSVAFALSVVGMLITVVNFAFC-QRWVKQYGSKPDFEPINYRKLLLTIVGVVAL  231 (500)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHh-HHHhccCCCCCCccccchhhHHHHHHHHHHH
Confidence            999999999999999999999999999999999876544443332222 11111110 01100000000000        


Q ss_pred             -cccccccCCcccccccchhhhhhhccccchhhhhhhhhhhhhhhHHhhcchhHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 014628          154 -EGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGY  232 (421)
Q Consensus       154 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (421)
                       ........+.+   . .........    ........++. ...++.-++|.+.. +. .+.....++......|.++.
T Consensus       232 ~~~~~~~~~~~~---~-~~~~~~~~~----~~~~~~~~~~~-~~~~~~~~~~~~~~-~~-~~~~~i~f~~~~~q~~~~l~  300 (500)
T PRK09584        232 IAIATWLLHNQE---I-ARMALGVVA----LGIVVIFGKEA-FAMKGAARRKMIVA-FI-LMLEAIIFFVLYSQMPTSLN  300 (500)
T ss_pred             HHHHHHHHhcch---H-HHHHHHHHH----HHHHHHHHHHH-hhcCHHHHHHHHHH-HH-HHHHHHHHHHHHHHhccHHH
Confidence             00000000000   0 000000000    00000000000 00011112222222 21 12223333344444444433


Q ss_pred             H----hh-----CCccchhHHHhhhhHHHHHHhhhhhHHHhhhccccchhhHHHHHHHHHHHHHHHHHHhhhh-------
Q 014628          233 N----IY-----HMSNADMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSS-------  296 (421)
Q Consensus       233 ~----~~-----~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------  296 (421)
                      .    ..     +.......+.++..+..++..++..++-+|.++|.... ..+..+.++.+++++.+....+       
T Consensus       301 ~~~~~~~~~~~~g~~i~~~~~~s~n~i~iil~~p~~~~~~~~l~~r~~~~-~~~~~G~~l~~l~f~~l~~~~~~~~~~~~  379 (500)
T PRK09584        301 FFAIRNVEHSILGIAVEPEQYQALNPFWIMIGSPILAAIYNKMGDRLPMP-HKFAIGMVLCSGAFLVLPLGAKFANDAGI  379 (500)
T ss_pred             HHHHHhccccccceEECHHHHHHHhHHHHHHHHHHHHHHHHHhCcCCCcH-HHHHHHHHHHHHHHHHHHHHHHhcCCCCc
Confidence            2    11     11111223344555555666666666667766653322 3344444444444444332222       


Q ss_pred             --hHHHHHHHHHHHHHHHhccCchhhhhhcccCCchhhHHHHHHHHHHHhhcccCcchh
Q 014628          297 --LYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPL  353 (421)
Q Consensus       297 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~  353 (421)
                        .+..+...++.+++.....|....++.+..|++.||+.+|+...... +|..++..+
T Consensus       380 vs~~~~~~~~~l~~~ge~~~~p~g~s~~~~~aP~~~rg~~~g~~~l~~a-~g~~~~g~~  437 (500)
T PRK09584        380 VSVNWLIASYGLQSIGELMISGLGLAMVAQLVPQRLMGFIMGSWFLTTA-GAALIAGYV  437 (500)
T ss_pred             cCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCcHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence              34566777788888888899999999999999999999998743332 244444333

>TIGR01272 gluP glucose/galactose transporter

Probab=99.90  E-value=2.7e-21  Score=168.61  Aligned_cols=275  Identities=13%  Similarity=0.096  Sum_probs=196.6

Q ss_pred             hhhhhHHHHHHHHHHhhhhhhhhccchhhhhhccCCCCCchhHHHHHHHHHHHHhhhHHHhHHhhhhc------------
Q 014628           39 GSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSH------------  106 (421)
Q Consensus        39 ~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~------------  106 (421)
                      +...+|+.+++.-++.|.|.+...+....++++..++|++.+.+++.+.+.++|..++|.+++.+...            
T Consensus         5 ~~~~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~~~~   84 (310)
T TIGR01272         5 ASQRYYVLFLGALFVLASGLTILQVAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQVATA   84 (310)
T ss_pred             HHhhHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhhhhh
Confidence            45678999999999999999999999999999999999999999999999999999999999987731            


Q ss_pred             ----chhHHHHHHHHHHHHHHHHHHHhcc-cccccccCCccccchhhhhhcccccccccCCcccccccchhhhhhhcccc
Q 014628          107 ----LNWRYAFWGEAILMLPFAVLAFVIK-PLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSI  181 (421)
Q Consensus       107 ----~~wr~~f~~~~~~~~~~~~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (421)
                          .+|+++|++.+.+.++..+...+.. ||..+     ++.+..                      .+      ++. 
T Consensus        85 ~~~~~~~~~~yl~ia~~~~~~~i~~~~~~~p~~~~-----~~~~~~----------------------~~------~~~-  130 (310)
T TIGR01272        85 NAEAAKVHTPYLLLAGALAVLAIIFAFLPLPELQE-----ADVARV----------------------SS------GDT-  130 (310)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCc-----cccccc----------------------cc------ccc-
Confidence                4799999977776555555443332 33110     000000                      00      000 


Q ss_pred             chhhhhhhhhhhhhhhHHhhcchhHHHHHHHHHHHHHHHHHHHHHhhHHHHHh--hCCccchh-HHHhhhhHHHHHHhhh
Q 014628          182 GESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNI--YHMSNADM-MFGGVTIVCGIVGTIS  258 (421)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~  258 (421)
                                   ...+..+++|.++...+..+++.....+...|.+.|+.+.  ++.++... ...+....+.++|+++
T Consensus       131 -------------~~~~~~~~~~~~~l~~~~~f~yvg~e~~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~  197 (310)
T TIGR01272       131 -------------TQKTSAFQFTHLVLGALGIFVYVGAEVSAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFI  197 (310)
T ss_pred             -------------cchhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence                         0011345677777777777777778889999999999864  46665444 4457777888999999


Q ss_pred             hhHHHhhhccccchhhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhccCchhhhhhcccCCchhhHHHHHH
Q 014628          259 GGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAIS  338 (421)
Q Consensus       259 ~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  338 (421)
                      ++++.||++++     +.+..+..++.+..++....++.. ......+.+++.+..+|...+...+..|+ +.+++.++.
T Consensus       198 ~~~l~~r~g~~-----~~l~~~~~l~~~~~~l~~~~~~~~-~~~~~~l~g~~~s~i~P~~~s~a~~~~~~-~~~~asai~  270 (310)
T TIGR01272       198 GSAVMPMISQG-----RYLAFNAFLAVLLSIGAALTHGYV-AMWFVLALGLFNSIMFPTIFSLALNALGR-HTSQGSGIL  270 (310)
T ss_pred             HHHHHHHhCHH-----HHHHHHHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHHHHHHHHHHHHHHhhhhh-hhhhhHHHH
Confidence            99999999987     555555544444443333333322 23355567788888889888888888765 356667775


Q ss_pred             HHHHHhhcccCcchhHHHhhhccccchhhhHH
Q 014628          339 TVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLA  370 (421)
Q Consensus       339 ~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~  370 (421)
                       .. ..+|+.+.|.+.|.+.|..| .+.++++
T Consensus       271 -~~-~~~Gg~i~P~l~G~lad~~g-~~~a~~v  299 (310)
T TIGR01272       271 -CL-AIVGGAIVPLLQGSLADCLG-IQLAFAL  299 (310)
T ss_pred             -HH-HHhcchHHHHHHHHHHHhcc-chHHHHH
Confidence             34 44589999999999999876 5555553

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.90  E-value=5.1e-21  Score=176.68  Aligned_cols=336  Identities=20%  Similarity=0.355  Sum_probs=253.8

Q ss_pred             ccccchhhHHHHhhhhcCCchHHHHHHHHHHHHHhhhhhh--------------------h-------------------
Q 014628            2 VGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSS--------------------F-------------------   42 (421)
Q Consensus         2 lg~~i~~~~~g~l~Dr~Grr~~~~~~~~~~~~~~~~~~~~--------------------~-------------------   42 (421)
                      +|..+...+..+.+-|.-|-|++-+|+++.+++++++++-                    +                   
T Consensus       143 ig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~lgsll~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~  222 (735)
T KOG3626|consen  143 IGNLLLIIFVSYFGSRGHRPRWIGIGLVLMGLGSLLFALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPS  222 (735)
T ss_pred             cchhhhhHhHHHhccccCccceeeechhHHHHHHHHHhChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCC
Confidence            4567788899999999999999999999999999998763                    0                   


Q ss_pred             ----------h--HH-HHHHHHHHhhhhhhhhccchhhhhhccCCCCCchhHHHHHHHHHHHHhhhHHHhHHhhhhcc--
Q 014628           43 ----------D--FW-SIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHL--  107 (421)
Q Consensus        43 ----------~--~~-~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~--  107 (421)
                                +  ++ .++++.++.|+|....++.+.+|+-|...+++-...+|+......+|.++|.++++++...+  
T Consensus       223 ~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~tlGisYiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD  302 (735)
T KOG3626|consen  223 PENSKREKESTSYPFLLFFLGQLLLGIGATPIFTLGISYIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVD  302 (735)
T ss_pred             CCcccccccCCchhHHHHHHHHHHhhcCCCCCccCCCccccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeec
Confidence                      0  22 56679999999999999999999999999999999999999999999999999999886421  


Q ss_pred             -----------------hhHHHHHHHHHHHHHHHHHHHhcccccccccCCccccchhhhhhcccccccccCCcccccccc
Q 014628          108 -----------------NWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDIS  170 (421)
Q Consensus       108 -----------------~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (421)
                                       -|..-|++.+.+.+..++..+++ |+..+...++.+.+..                   +..+
T Consensus       303 ~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~~~a~p~f~f-Pk~lp~~~~~~~~~~~-------------------~~~k  362 (735)
T KOG3626|consen  303 FGLSPIGITPTDPRWIGAWWLGFLICGALLLFSAVPLFFF-PKELPKSQKRKRARDL-------------------HVLK  362 (735)
T ss_pred             cccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhC-cccCccccccchhhhh-------------------cccc
Confidence                             27788888888888877777666 5443321111000000                   0000


Q ss_pred             hhhhhhhccccchhhhhhhhhhhhhhhHHhhcchhHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhCCccchh--HHHhhh
Q 014628          171 DQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM--MFGGVT  248 (421)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~  248 (421)
                      ++..    ..+......+..+++.+..+++++||.+....++..+....+.++.+|+|.|++.+++.++..+  ..+.+.
T Consensus       363 ~~~~----~~~~~~~~~~~ikdfp~s~~~ll~N~if~~~~l~~~~~~~~~~G~~tFlPKyLE~Qfg~sas~An~l~G~i~  438 (735)
T KOG3626|consen  363 TESG----GAKSDKTFGKKIKDFPKSIKRLLSNPIFMLVVLASVIESLAITGYITFLPKYLETQFGISASLANILTGSIG  438 (735)
T ss_pred             cccc----cccCCcchhhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhHHHhhHHHHHHHcCCCHHHHHHHhhhhh
Confidence            0000    1111122224567788889999999999999999999999999999999999999999986544  333455


Q ss_pred             hHHHHHHhhhhhHHHhhhccccchhhHHHHHHHHHHHHHHHHHHh-----------------------------------
Q 014628          249 IVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFC-----------------------------------  293 (421)
Q Consensus       249 ~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------------------  293 (421)
                      ..+..+|.+++|++.+|+.-+.+...++.++..++..++....++                                   
T Consensus       439 vp~~~~Gi~lGG~iikkfkl~~r~~a~~~~~~~~l~l~~~~~~~~igC~~~~~aG~~~~y~~~~~~~~~~~~~s~Cn~~C  518 (735)
T KOG3626|consen  439 VPAAAVGIFLGGLIIKKFKLSARGAAKFVIVCSVLSLLFYSLLFFIGCESSPVAGVTNSYEGSPAFTSHENPFSSCNSDC  518 (735)
T ss_pred             hhhhhhhhhccceeeeeecccHHHHHHHHHHHHHHHHHHHHHHHEecCCCCcccceecCCCCCCccccCCCchhhhhcCC
Confidence            566688999999999999876544444555555555544333332                                   


Q ss_pred             --------------------------------------------hh--------------------hhHHHHHHHHHHHH
Q 014628          294 --------------------------------------------LS--------------------SLYGFLALFTVGEL  309 (421)
Q Consensus       294 --------------------------------------------~~--------------------~~~~~~~~~~~~~~  309 (421)
                                                                  .+                    ....+++.+++..+
T Consensus       519 ~C~~~~~~PVCg~~G~tY~SpChAGC~~~~~~~~~~~~ytnCsCv~~~~~~~~~a~~G~C~~~c~~~~~~Fl~~~~~~sf  598 (735)
T KOG3626|consen  519 SCDTSEYEPVCGENGITYFSPCHAGCTESSGTSDGNTIYTNCSCVPTNKNGNGSAKKGYCPNDCCRQFLIFLALFAIGSF  598 (735)
T ss_pred             CCCCcCcCcccCCCCCEEeChhhhCCcccccCCCCceeeccccccccccCCCceeecCCCCCCcchhhHHHHHHHHHHHH
Confidence                                                        00                    12345566666777


Q ss_pred             HHHhccCchhhhhhcccCCchhhHHHHHHHHHHHhhcccCcchhHHHhhhcc
Q 014628          310 LVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHV  361 (421)
Q Consensus       310 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~  361 (421)
                      ..+...++.+.++.+.+++|+|+.++|+..+..+.+|.+-+|+++|++.|..
T Consensus       599 ~~~~~~~p~~~i~LR~V~~e~ks~AlG~~~~~irllg~IPsPIifG~~ID~t  650 (735)
T KOG3626|consen  599 IGALGAVPGMLIVLRCVPPEEKSFALGFQWMLIRLLGFIPSPIIFGAVIDTT  650 (735)
T ss_pred             HHHhccCcceEEEEEccCchhchhhhHHHHHHHHHHhcCCchHhhhhhHhhH
Confidence            7778888899999999999999999999999999999999999999999965

>PRK09669 putative symporter YagG; Provisional

Probab=99.89  E-value=3.9e-21  Score=177.58  Aligned_cols=305  Identities=12%  Similarity=0.059  Sum_probs=196.3

Q ss_pred             ccchhhHHHHhhhh----cCCc-hHHHHHHHHHHHHHhhhhhhhh------HHHHHHHHHHhhhhhhhhccchhhhhhcc
Q 014628            4 LLVASPIFASLAKS----HNPF-RLIGVGLSVWTFATAGCGSSFD------FWSIAICRMLVGVGEASFISLAAPFIDDN   72 (421)
Q Consensus         4 ~~i~~~~~g~l~Dr----~Grr-~~~~~~~~~~~~~~~~~~~~~~------~~~l~~~r~l~G~~~~~~~~~~~~~i~~~   72 (421)
                      .++..|+.|+++||    +||| +.++.+.+..+++.++....++      +..+++.-++.+.+.........++.+|+
T Consensus        58 dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l~f~~p~~~~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~~  137 (444)
T PRK09669         58 DAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLLTFYTPDFGATGKIIYACVTYILLSLVYTAINVPYCAMPGAI  137 (444)
T ss_pred             HHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHHHHHHhhcchHHHhHHHh
Confidence            45778999999999    7774 5566777777777665544432      45566666777777777777788999998


Q ss_pred             C-CCCCchhHHHHHHHHHHHHhhhHHHhHHhhhh-------cchhHHHHHHHHHHHHHHHHHHHhcccccccccCCcccc
Q 014628           73 A-PVPQKTAWLSMFYMCIPTGVALGYVYGGVVGS-------HLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESG  144 (421)
Q Consensus        73 ~-~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~-------~~~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~  144 (421)
                      . ++++|++..++...+..+|..+++.+...+..       ..+|+..+.+.+++.++..+..++..+|....   ++++
T Consensus       138 t~~~~eR~~l~~~r~~~~~~G~~i~~~~~~pl~~~~~~~~~~~g~~~~~~i~~ii~~v~~~~~~~~~~e~~~~---~~~~  214 (444)
T PRK09669        138 TNDPRERHSLQSWRFALSFIGGLIVSVIALPLVDILGKGDEQKGYFYAMMVMGLLGVVLFFCCFFMTKERYTP---EVDN  214 (444)
T ss_pred             cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHhCCeEEecCC---CCcC
Confidence            8 55789999899888888888887765544332       34789888888887776666555554442111   0000


Q ss_pred             chhhhhhcccccccccCCcccccccchhhhhhhccccchhhhhhhhhhhhhhhHHhhcchhHHHHHHHHHHHHHHHHHHH
Q 014628          145 KAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYS  224 (421)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  224 (421)
                      +                                             .+..++++.+++||.++......++.........
T Consensus       215 ~---------------------------------------------~~~~~~~~~~~~n~~~~~l~~~~~~~~~~~~~~~  249 (444)
T PRK09669        215 S---------------------------------------------SSVWKDLKLLLGNSQWRIMFIFNVVLLTAVVTRG  249 (444)
T ss_pred             C---------------------------------------------CCHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHh
Confidence            0                                             0112457778899998887776665545444433


Q ss_pred             HHhhHHHHHhhCCccchhHHHhhhhHHHHHHhhhhhHHHhhhccccchhhHHHHHHHHHHHHHHH-HHH-hhhhhHHHHH
Q 014628          225 YWGPKAGYNIYHMSNADMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCL-TAF-CLSSLYGFLA  302 (421)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~  302 (421)
                      ...+.|.+...+.+.....+.....+..+++.++.+++.||+++|     +.............. ... ..++.+...+
T Consensus       250 ~~~~y~~~~~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (444)
T PRK09669        250 GATLYYVNYVLLRPDLATLFLVTGMIAGLFGALLSERLLGKFDRV-----RAFKWTIVAFVILSALIFFIPPSNVWLIFA  324 (444)
T ss_pred             hhhheeeeeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChH-----HHHHHHHHHHHHHHHHHHHhCcchHHHHHH
Confidence            433333333333222222333444566778888999999999987     555444433332222 222 2345555566


Q ss_pred             HHHHHHHHHHhccCchhhhhhcccCC-------chhhHHHHHHHHHHHhhcccCcchhHHHhhhccc
Q 014628          303 LFTVGELLVFATQAPVNYVCLHSVKP-------SLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVN  362 (421)
Q Consensus       303 ~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~g  362 (421)
                      ..++.+++.+...+...+++.|.++.       +..|...|..+..... |..+++.+.|.+.+..|
T Consensus       325 ~~~i~g~~~~~~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~kl-g~alg~~i~g~ll~~~G  390 (444)
T PRK09669        325 LNILFNFIQNLTTPLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKL-GLAIGGAVVGWILAWVD  390 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHH-HHHHHHHHHHHHHHHcC
Confidence            66677777777777778888877642       2345667777555555 88999999999988765

>PRK10429 melibiose:sodium symporter; Provisional

Probab=99.88  E-value=8e-21  Score=176.57  Aligned_cols=309  Identities=7%  Similarity=-0.024  Sum_probs=195.7

Q ss_pred             cchhhHHHHhhh----hcCC-chHHHHHHHHHHHHHhhhhhhhh------HHHHHHHHHHhhhhhhhhccchhhhhhccC
Q 014628            5 LVASPIFASLAK----SHNP-FRLIGVGLSVWTFATAGCGSSFD------FWSIAICRMLVGVGEASFISLAAPFIDDNA   73 (421)
Q Consensus         5 ~i~~~~~g~l~D----r~Gr-r~~~~~~~~~~~~~~~~~~~~~~------~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~   73 (421)
                      ++..|+.|+++|    |+|| |+.++++.+..+++..++-..++      +..+++.-++.+++.....+...+++.|..
T Consensus        56 ai~dp~~G~lsD~t~sr~Grrrp~il~g~i~~~i~~~llf~~p~~~~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~lt  135 (473)
T PRK10429         56 AINDPIMGWIVNNTRSRWGKFKPWILIGTLANSVVLFLLFSAHLFEGTAQYVFVCVTYILWGMTYTIMDIPFWSLVPTLT  135 (473)
T ss_pred             HHhhchheeehhcCCCCCCCcchhHhhhhHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHHHHHHHHHcchHHhhhHHhC
Confidence            467788999999    6698 55677788777777655543321      334555666778888888888999999998


Q ss_pred             -CCCCchhHHHHHHHHHHHHhhhHHHhHHhhhh-------cchhHHHHHHHHHHHHHHHHHHHhcccccccccCCccccc
Q 014628           74 -PVPQKTAWLSMFYMCIPTGVALGYVYGGVVGS-------HLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGK  145 (421)
Q Consensus        74 -~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~-------~~~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~  145 (421)
                       +++||.+..++-..+.++|..+.+.+...+.+       ..+|+....+.+++.++..+..++..||......  ++.+
T Consensus       136 ~~~~eR~~l~~~~~~~~~ig~~~~~~~~~~~~~~~g~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~e~~~~~~--~~~~  213 (473)
T PRK10429        136 LDKREREQLVPYPRFFASLAGFVTAGFTLPFVNYVGGGDRGFGFQMFTLVLIAFFIVSTIITLRNVHEVYSSDN--QVSA  213 (473)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHHcCceecCCccc--cccc
Confidence             58899999998777777776666555443321       2357877777777766655555554455211100  0000


Q ss_pred             hhhhhhcccccccccCCcccccccchhhhhhhccccchhhhhhhhhhhhhhhHHhhcchhHHHHHHHHHHHHHHHHHHHH
Q 014628          146 AQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSY  225 (421)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  225 (421)
                      ..                                         +..+..+.++.+++||.++..+...++..........
T Consensus       214 ~~-----------------------------------------~~~~~~~~~~~~~~n~~~~~ll~~~~~~~~~~~~~~~  252 (473)
T PRK10429        214 EG-----------------------------------------SHLTLKDIVALIYKNDQLSCLLGMALAYNIASNIING  252 (473)
T ss_pred             cc-----------------------------------------cCCCHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhh
Confidence            00                                         0001123456677898888877777777666666666


Q ss_pred             HhhHHHHHhhCCccchhHHHhhhhHHHHHHhhhhhHHHhhhccccchhhHHHHHHHHHHHHHHHHHH-----hhhhhHHH
Q 014628          226 WGPKAGYNIYHMSNADMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAF-----CLSSLYGF  300 (421)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~  300 (421)
                      +.+.|.+...+.+.....+.....+..+++.++.+++.||+|+|     +.+..+..+..+..+...     ..++.+..
T Consensus       253 ~~~y~~~y~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  327 (473)
T PRK10429        253 FAIYYFTYVIGDADLFPYYLSYAGAANLVTLILFPRLVKSLSRR-----ILWAGASIFPVLSCGVLLLMGLAAPHNALLI  327 (473)
T ss_pred             heeeEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcH-----HHHHHHHHHHHHHHHHHHHHhccCchhHHHH
Confidence            66655554444322222333445577788889999999999998     555544444333222221     12334444


Q ss_pred             HHHHHHHHHHHHhccCchhhhhhcccC-------CchhhHHHHHHHHHHHhhcccCcchhHHHhhhccc
Q 014628          301 LALFTVGELLVFATQAPVNYVCLHSVK-------PSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVN  362 (421)
Q Consensus       301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~g  362 (421)
                      ++...+.+.+.+...+...+++.|.++       .+..|...|..+..... |..+++.+.|++.+..|
T Consensus       328 ~i~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~-~~al~~~i~g~~l~~~G  395 (473)
T PRK10429        328 VIAGILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKG-GSAFAAFFIGVVLGLIG  395 (473)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHH-HHHHHHHHHHHHHHHcC
Confidence            455555666666666767777887755       23455677887544444 88899999999988665

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=99.88  E-value=1.1e-19  Score=164.83  Aligned_cols=342  Identities=13%  Similarity=0.038  Sum_probs=219.1

Q ss_pred             cccchhhHHHHhhh----hcCCchHHHHH-HHHHHHHHhhhhhhhhHH-----------------HHHHHHHHhhhhhhh
Q 014628            3 GLLVASPIFASLAK----SHNPFRLIGVG-LSVWTFATAGCGSSFDFW-----------------SIAICRMLVGVGEAS   60 (421)
Q Consensus         3 g~~i~~~~~g~l~D----r~Grr~~~~~~-~~~~~~~~~~~~~~~~~~-----------------~l~~~r~l~G~~~~~   60 (421)
                      ..++.+|+.|+++|    |+||||.++++ .....++.++.+++++..                 .++++-.+..++...
T Consensus        51 ~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~~l~ll~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~lld~~~n~  130 (477)
T TIGR01301        51 SGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAFAVILIGFAADIGHLFGDNLDKKTKPRAIIVFVVGFWILDVANNM  130 (477)
T ss_pred             HHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHHHHHHHHHhCchhhhhccccccccchhHHHHHHHHHHHHHHHHHHH
Confidence            34678899999999    59999998774 666666667777776643                 222233344457777


Q ss_pred             hccchhhhhhccCCCCCc--hhHHHHHHHHHHHHhhhHHHhHHhh--hhcc-------------hhHHHHHHHHHHHHHH
Q 014628           61 FISLAAPFIDDNAPVPQK--TAWLSMFYMCIPTGVALGYVYGGVV--GSHL-------------NWRYAFWGEAILMLPF  123 (421)
Q Consensus        61 ~~~~~~~~i~~~~~~~~r--~~~~~~~~~~~~~G~~~g~~~~~~l--~~~~-------------~wr~~f~~~~~~~~~~  123 (421)
                      ..+...++++|.+|+++|  +.+.++.+...++|.++|+.++++.  .+.+             +.|..|++.++..++.
T Consensus       131 ~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~  210 (477)
T TIGR01301       131 LQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGAYSGLYKIFPFTKTEACGVSCANLKSCFLIDIILLAIL  210 (477)
T ss_pred             HHHHHHHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccccccccccccchHHHHHHHHHHHHHHH
Confidence            888899999999998865  5799999999999999999999875  2211             5789999998888887


Q ss_pred             HHHHHhcccccccccCCccccchhhhhhcccccccccCCcccccccchhhhhhhccccchhhhhhhhhhhhhhhHHhhcc
Q 014628          124 AVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQE  203 (421)
Q Consensus       124 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (421)
                      .++..+..+|.+...  +++.+..       +.             ++.  ++.+       ....+++.++.++++  .
T Consensus       211 ~l~t~~~v~E~~~~~--~~~~~~~-------~~-------------~~~--~~~~-------~~~~~~~i~~~~~~m--P  257 (477)
T TIGR01301       211 TYIALSAVKENPLIG--SDDFINS-------EA-------------APP--SKHG-------EEAFFGELFGAFKYL--P  257 (477)
T ss_pred             HHHHeeeeeccCCCc--cccchhh-------hc-------------ccc--cccc-------hhhhHHHHHHHHHHC--C
Confidence            777777777754211  1100000       00             000  0000       001223334444432  4


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhHHHH-HhhCCcc-------ch---h-HHHhhhhHHHHHHhhhhhHHHhhhccccc
Q 014628          204 KVYVVNVLGYIAYNFVIGAYSYWGPKAGY-NIYHMSN-------AD---M-MFGGVTIVCGIVGTISGGFILDQMGATIS  271 (421)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-------~~---~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~  271 (421)
                      +.++.+++..++...+.+.+..|.+.+.. +.++.++       ..   . .-..+..+...+.+++..++.+|+|+|+ 
T Consensus       258 ~~m~~l~~vqffsW~a~f~~~~y~T~~vg~~v~~~~~~~~~~y~~gvr~G~~~l~~~s~~~~i~s~~l~~l~~~~g~~k-  336 (477)
T TIGR01301       258 RPVWILLLVTCLNWIAWFPFILFDTDWMGREVYGGSVNQGAKYDDGVRAGAFGLMLNSVVLGITSIGMEKLCRGWGAGK-  336 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch-
Confidence            67788888888888888888888887765 4554332       11   1 1113334444556666777888887531 


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHhhhh---------------------hHHHHHHHHHHHHHHHhccCchhhhhhcccCC--
Q 014628          272 NAFKLLSAATFLGAISCLTAFCLSS---------------------LYGFLALFTVGELLVFATQAPVNYVCLHSVKP--  328 (421)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  328 (421)
                         .....+.++.+.++....+.++                     .+..++.+.+.|+.....+..-++++.+..++  
T Consensus       337 ---~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Gi~~A~~~siPfal~s~~~~~~~  413 (477)
T TIGR01301       337 ---RLWGIVNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASALIVFAILGIPLAITYSIPFALASIRSSNLG  413 (477)
T ss_pred             ---hHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccCcchhhHHHHHHHHHHhhHHHHHHHHHhHHHHHHHccccC
Confidence               3434444444444433332221                     25566777778888888888889999999985  


Q ss_pred             chhhHHHHHHHHHHHhhcccCcchhHHHhhhccccch-hhhHHHHHHHHHHHHHH
Q 014628          329 SLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWR-KTTLALTSIFFLAAGIW  382 (421)
Q Consensus       329 ~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~g~~~-~~~~~~~~~~~~~~~~~  382 (421)
                      +..|..+|+.|.+... .+++.....|.+.+..|+.. ..+.+.++.++++++..
T Consensus       414 ~~~G~~mgilN~~I~l-pQii~sl~~g~~~~~~g~~~~~~~~~~gv~~~~aa~~~  467 (477)
T TIGR01301       414 AGQGLSMGVLNLAIVI-PQIIVSLGSGPWDQLFGGGNLPAFVVGAVAAFVSGLLA  467 (477)
T ss_pred             CCCcchhhHHHHHHHH-HHHHHHHHHHHHHHHcCCCCeeHHHHHHHHHHHHHHHH
Confidence            4669999999988777 88887777777666666433 34444444444444433

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=99.87  E-value=2.9e-19  Score=162.77  Aligned_cols=125  Identities=14%  Similarity=0.127  Sum_probs=100.6

Q ss_pred             ccchhhHHHHhhhhc-CCchHHHHHHHHHHHHHhhhhhhhh-HHHHHHHHHHhhhhhhhhccchhhhhhccCCCC--Cch
Q 014628            4 LLVASPIFASLAKSH-NPFRLIGVGLSVWTFATAGCGSSFD-FWSIAICRMLVGVGEASFISLAAPFIDDNAPVP--QKT   79 (421)
Q Consensus         4 ~~i~~~~~g~l~Dr~-Grr~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~--~r~   79 (421)
                      ..++++++|+++||+ ||||+++++.++..++.++.+..++ ...+.+...+.++|.|...+...++++|.+|++  +|.
T Consensus        58 ~~l~~ligG~LaDRilGrrr~iliG~il~~lg~lll~~~~~~~~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~~R~  137 (493)
T PRK15462         58 VYVTPILGGFLADKVLGNRMAVMLGALLMAIGHVVLGASEIHPSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPRRD  137 (493)
T ss_pred             HHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcccccccHHHHHHHHCCCCCcccc
Confidence            456788999999999 9999999999999999887765432 233444455555677777788889999999875  699


Q ss_pred             hHHHHHHHHHHHHhhhHHHhHHhhhhcchhHHHHHHHHHHHHHHHHHHHh
Q 014628           80 AWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFV  129 (421)
Q Consensus        80 ~~~~~~~~~~~~G~~~g~~~~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~  129 (421)
                      +++++.+.+.++|..++|.+.+++.+.+|||+.|.+.++.. +.+++.++
T Consensus       138 sgf~i~Y~~~nlG~~iap~l~g~L~~~~Gw~~~F~iaaigm-~l~li~~~  186 (493)
T PRK15462        138 GGFSLMYAAGNVGSIIAPIACGYAQEEYSWAMGFGLAAVGM-IAGLVIFL  186 (493)
T ss_pred             ceehHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHH-HHHHHHHH
Confidence            99999999999999999999999999999999999976643 44444433

>PF13347 MFS_2: MFS/sugar transport protein

Probab=99.87  E-value=2.4e-20  Score=171.50  Aligned_cols=306  Identities=16%  Similarity=0.152  Sum_probs=229.1

Q ss_pred             cchhhHHHHhhh----hcCCchH-HHHHHHHHHHHHhhhhhh-h-------hHHHHHHHHHHhhhhhhhhccchhhhhhc
Q 014628            5 LVASPIFASLAK----SHNPFRL-IGVGLSVWTFATAGCGSS-F-------DFWSIAICRMLVGVGEASFISLAAPFIDD   71 (421)
Q Consensus         5 ~i~~~~~g~l~D----r~Grr~~-~~~~~~~~~~~~~~~~~~-~-------~~~~l~~~r~l~G~~~~~~~~~~~~~i~~   71 (421)
                      ++..|+.|.++|    |+||||. ++++....+++.+++... +       ....+.+.-++..++.........++..|
T Consensus        51 ai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf~~~p~~~~~~~~~~~~~~~~~l~~~~~t~~~i~~~al~~~  130 (428)
T PF13347_consen   51 AITDPLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLFSPPPAGLSFTAKLVWLFVFYILFDIAYTFVQIPYNALIPE  130 (428)
T ss_pred             hhcCCcEEEEEeeecccccccceEeehhhHHHHHHHHHhhccccchhhhhhHHHHHHHHHHHHHHhhhhccCchhhcCcc
Confidence            466789999999    8997775 567878888877777655 4       22345667777789999999999999999


Q ss_pred             cCC-CCCchhHHHHHHHHHHHHhhhHHHhHHhhhhc-------chhHHHHHHHHHHHHHHHHHHHhcccccccccCCccc
Q 014628           72 NAP-VPQKTAWLSMFYMCIPTGVALGYVYGGVVGSH-------LNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAES  143 (421)
Q Consensus        72 ~~~-~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~-------~~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~  143 (421)
                      ..+ +++|.+..+.-..+..+|..+...+.+.+.+.       .+|++..++.+++.++..++.++..+|..+..  +++
T Consensus       131 lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~~v~~iv~~v~~~i~~~~~ke~~~~~--~~~  208 (428)
T PF13347_consen  131 LTPDPDERTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDTSNGYRWMALVLAIVGLVFFLITFFFVKERSVEV--TEQ  208 (428)
T ss_pred             ccccHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCccchHHHHHHHHHHHHHHHHhhhhhheeeeccccc--ccc
Confidence            997 57899999999999999987666666655532       16999999999988888887777766611110  000


Q ss_pred             cchhhhhhcccccccccCCcccccccchhhhhhhccccchhhhhhhhhhhhhhhHHhhcchhHHHHHHHHHHHHHHHHHH
Q 014628          144 GKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAY  223 (421)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  223 (421)
                      .+                                            ..+..+.++.+++||.++......++........
T Consensus       209 ~~--------------------------------------------~~~~~~~~~~~~~nr~~~~l~~~~~~~~~~~~~~  244 (428)
T PF13347_consen  209 EK--------------------------------------------KISLRDSLRSLFRNRPFRILLLAFFLQWLAFALM  244 (428)
T ss_pred             cc--------------------------------------------ccccccchhhhcccchHHHHHHHHHHHHhhhhhh
Confidence            00                                            0111345778889999998888888887777777


Q ss_pred             HHHhhHHHHHhhCCccchhHHHhhhhHHHHHHhhhhhHHHhhhccccchhhHHHHHHHHHHHHHHHHHHhhh--hhHHHH
Q 014628          224 SYWGPKAGYNIYHMSNADMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLS--SLYGFL  301 (421)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~  301 (421)
                      ....+.|.++..+.+.....+..+..+..+++.++.++++||+|+|     +.+..+..+.+...+.....+  +.+...
T Consensus       245 ~~~~~y~~~~vl~~~~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (428)
T PF13347_consen  245 NTFLPYYFTYVLGNEGLISIFMLIFFVASIVGSPLWGRLSKRFGKK-----KVYIIGLLLAALGFLLLFFLGPGSPWLVL  319 (428)
T ss_pred             hhHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHHccce-----eehhhhHHHHHHHHHHHHHHHhhhHHHHH
Confidence            7778888888777775444555667788899999999999999999     666666666666655555444  778888


Q ss_pred             HHHHHHHHHHHhccCchhhhhhcccCC-------chhhHHHHHHHHHHHhhcccCcchhHHHhhhccc
Q 014628          302 ALFTVGELLVFATQAPVNYVCLHSVKP-------SLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVN  362 (421)
Q Consensus       302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~g  362 (421)
                      +...+.+.+.+..+....++..|..+.       +..|...|+.+..... +..+++.+.+.+.+..|
T Consensus       320 i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~-~~~la~~i~g~~l~~~G  386 (428)
T PF13347_consen  320 ILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKI-GQGLAGAIVGLLLALVG  386 (428)
T ss_pred             HHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHH-HHHHHHHHHHHHHHHhC
Confidence            888888999888888888888888763       3458888888655555 88888888888877654

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=99.87  E-value=1.2e-19  Score=162.76  Aligned_cols=307  Identities=19%  Similarity=0.145  Sum_probs=215.6

Q ss_pred             cccchhhHHHHhhhhcC-CchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhhhhhhhccchhhhhhccCCCCCchhH
Q 014628            3 GLLVASPIFASLAKSHN-PFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAW   81 (421)
Q Consensus         3 g~~i~~~~~g~l~Dr~G-rr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~   81 (421)
                      ..+++++++|.++||++ +||++.+..++.++........++++.+++.-++..+......|...++..++..  +++.-
T Consensus        49 ~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~~~~~~~f~~~~~~~~l~~~~~~p~~pl~dsi~~~~~~--~~~~~  126 (400)
T PF03825_consen   49 ARIVSPPFWGAIADRFGSAKRILALLSLLSALALLLLAFSSSFWWLFVIMLLFSFFFSPTMPLSDSIALSYLG--DRGKD  126 (400)
T ss_pred             HHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHccHHHHHHHHHHHHcc--cccCC
Confidence            34678899999999985 6778888888888877777888899988888888888888888888888888775  34455


Q ss_pred             HHHHHHHHHHHhhhHHHh-HHhhhhcch---hHHHHHHHHHHHHHHHHHHHhcccccccccCCccccchhhhhhcccccc
Q 014628           82 LSMFYMCIPTGVALGYVY-GGVVGSHLN---WRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSE  157 (421)
Q Consensus        82 ~~~~~~~~~~G~~~g~~~-~~~l~~~~~---wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~  157 (421)
                      .|-.....++|.+++... +..+....+   ..+.+++.+..+++.....+ ..|+.+++++.+++.+..          
T Consensus       127 YG~iRlwGSiGf~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ll~~~~l-~lp~~~~~~~~~~~~~~~----------  195 (400)
T PF03825_consen  127 YGRIRLWGSIGFIVAALAFGGLLGGYLGISGTSLIFYIAAILSLLLAGFAL-FLPKTPPKRSAKESVKKL----------  195 (400)
T ss_pred             CCcchhhhhHHHHHHHHHHHHHHHhhhccccccHHHHHHHHHHHHHHHHHH-hCCCCccccccCCCcccc----------
Confidence            666666777777776543 223332222   33456666555444443333 346544221111111000          


Q ss_pred             cccCCcccccccchhhhhhhccccchhhhhhhhhhhhhhhHHhhcchhHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhCC
Q 014628          158 ASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHM  237 (421)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (421)
                                                         ...+..+++|+|++....+..++.+.....+..+.+.|+++.++.
T Consensus       196 -----------------------------------~~~~~~~llk~~~~~~Fll~~~l~~~~~~~~~~f~~~yl~~~gg~  240 (400)
T PF03825_consen  196 -----------------------------------LGLDALKLLKNPRFLVFLLAAFLIGISHAAYYTFFSIYLQELGGY  240 (400)
T ss_pred             -----------------------------------cchHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc
Confidence                                               012344688999999888888888888888999999999998865


Q ss_pred             ccchh-HHHhhhhHHHHHHhhhhhHHHhhhccccchhhHHHHHHHHHHHHHHHHHHhh-hhhHHHHHHHH----HHHHHH
Q 014628          238 SNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCL-SSLYGFLALFT----VGELLV  311 (421)
Q Consensus       238 ~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~----~~~~~~  311 (421)
                      +.... ...++..++.++.....+++.+|+|.+     +++..+.+..++=..+.... ++.+.......    +-+...
T Consensus       241 ~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~-----~ll~~a~~~~~vR~~l~a~~~~~~~~~~~~~~l~q~lhG~tf  315 (400)
T PF03825_consen  241 SGSTIGILWALGVVAEIPFFFFSGRFLKRFGIK-----WLLLLALVAYAVRWLLYAYFSDPWPFIVALQLLGQLLHGLTF  315 (400)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHH-----HHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHhhhhHHH
Confidence            43332 333556677888888899999999887     77777777766665555544 44443333333    467777


Q ss_pred             HhccCchhhhhhcccCCchhhHHHHHHHHHHHhhcccCcchhHHHhhhccc
Q 014628          312 FATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVN  362 (421)
Q Consensus       312 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~g  362 (421)
                      +..+.....++.+..|++.|+++.++++.....+|..+|..+.|++.|+.|
T Consensus       316 ~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g  366 (400)
T PF03825_consen  316 GLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFG  366 (400)
T ss_pred             HHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhc
Confidence            777888889999999999999999999877777799999999999999876

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=99.87  E-value=5.4e-20  Score=157.89  Aligned_cols=333  Identities=14%  Similarity=0.103  Sum_probs=250.8

Q ss_pred             ccchhhHHHHhhhhcCCchH-HHHHHHHHHHHHhhhhhhhh---HHHHHHHHHHhhhhhhhhccchhhhhhccCCCCCch
Q 014628            4 LLVASPIFASLAKSHNPFRL-IGVGLSVWTFATAGCGSSFD---FWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKT   79 (421)
Q Consensus         4 ~~i~~~~~g~l~Dr~Grr~~-~~~~~~~~~~~~~~~~~~~~---~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~   79 (421)
                      .++-+|+.|.++|+.|+||- +-....+..++.++..++++   ++..++.-.+..++.......-.+++.+..++++-+
T Consensus        71 ia~LapiLG~iaD~~g~Rk~~~~~f~~i~i~~~~~L~~i~~~s~~~~~l~~~il~~i~~~~s~Vfyds~L~~~~~k~~~~  150 (438)
T COG2270          71 IALLAPILGTIADYPGPRKKFFGFFTAIGIISTFLLWFIPPGSYLLLLLLFLILASIGFEFSNVFYDSMLPRLTTKDNMG  150 (438)
T ss_pred             HHHHHHHhhhhhccCCCcchHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhcchhheehhhHhhhhcCccccC
Confidence            35667899999999996665 55556666666666677665   444455777788888888888999999999998888


Q ss_pred             hHHHHHHHHHHHHhhhHHHhH--Hhh-h---------------hcchhHHHHHHHHHHHHHHHHHHHhcccccccccCCc
Q 014628           80 AWLSMFYMCIPTGVALGYVYG--GVV-G---------------SHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPA  141 (421)
Q Consensus        80 ~~~~~~~~~~~~G~~~g~~~~--~~l-~---------------~~~~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~  141 (421)
                      +..+.-.....+|.++.-++.  ..+ .               +...-|..+.+.++-.++..+-.++..|+.++.. .+
T Consensus       151 riS~lg~~~gylgs~i~li~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ri~~~l~A~W~li~~iPm~~~v~~~~~~~-~~  229 (438)
T COG2270         151 RISGLGWALGYLGSVILLIFVVLGFALGQQTGITIILLGLPPADGEDVRITGLLAALWWLLFALPMILNVHDAEKIS-SP  229 (438)
T ss_pred             cccccccccccccchHHHHHHHHHHhcccccceeEEeeccCccccccchhHHHHHHHHHHHHHhHHHhccccccccc-cc
Confidence            887776666666665544442  111 1               2234678888888777777776666655432211 00


Q ss_pred             cccchhhhhhcccccccccCCcccccccchhhhhhhccccchhhhhhhhhhhhhhhHHhhcchhHHHHHHHHHHHHHHHH
Q 014628          142 ESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIG  221 (421)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (421)
                      +                                        .+.....+++.+.++++..+++.+...+++.+++.-+.+
T Consensus       230 ~----------------------------------------~~~l~~g~k~L~~t~k~i~~~~~i~~FLiA~~~~~DGv~  269 (438)
T COG2270         230 P----------------------------------------PTALRNGFKELKSTFKEIRGRKNLVLFLIARFFYIDGVN  269 (438)
T ss_pred             c----------------------------------------hHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhhHH
Confidence            0                                        011225667778889999999999999999999999999


Q ss_pred             HHHHHhhHHHHHhhCCccchh-HHHhhhhHHHHHHhhhhhHHHhhhccccchhhHHHHHHHHHHHHHHHHHHhhhhhHHH
Q 014628          222 AYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGF  300 (421)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (421)
                      ....+...|..+.+|.+..+. .+.....+.+++|.++.|++.||++.|     +++..+..+....++...+......+
T Consensus       270 til~~~~~fg~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k-----~vl~~~lvi~~~~~~~~~~~~~~~~f  344 (438)
T COG2270         270 TILAMGGVFGAADLGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSK-----PVLMIGLVILSIAALYLIFLEGELDF  344 (438)
T ss_pred             HHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc-----eeehHHHHHHHHHHHHHHHccccHHH
Confidence            999999999998999997766 445677799999999999999999998     66666666666666665555656666


Q ss_pred             HHHHHHHHHHHHhccCchhhhhhcccCCchhhHHHHHHHHHHHhhcccCcchhHHHhhhccccchhhhHHHHHHHHHHHH
Q 014628          301 LALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFFLAAG  380 (421)
Q Consensus       301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~  380 (421)
                      .++..+.+...+..+...-++..+.+|+++-++..|+++...+. ++..||.+.+.+.+.+|+.+..+.....+..++..
T Consensus       345 ~i~gll~g~s~G~~qA~SRSy~~~lvp~~k~~~fFglyaltgra-~S~~gp~lv~v~t~iTg~~r~g~~~i~vll~iGl~  423 (438)
T COG2270         345 WILGLLVGTSLGGAQASSRSYLARLVPKGKEGRFFGLYALTGRA-ASFLGPFLVAVITQITGSSRAGVLSIIVLLLIGLL  423 (438)
T ss_pred             HHHHHHHHHhcchHHHHHHHHHHHhCCCccccceeehhhhhhhH-HHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhhHh
Confidence            66777788888888999999999999999999999999766665 88999999999999999887777777666666655


Q ss_pred             HHH
Q 014628          381 IWF  383 (421)
Q Consensus       381 ~~~  383 (421)
                      .+.
T Consensus       424 ~L~  426 (438)
T COG2270         424 LLL  426 (438)
T ss_pred             hEE
Confidence            544

>TIGR00788 fbt folate/biopterin transporter

Probab=99.86  E-value=1.2e-20  Score=174.02  Aligned_cols=345  Identities=13%  Similarity=0.014  Sum_probs=207.9

Q ss_pred             hhHHHHhhhhcC-----CchHHHHHHHHHH-HHHhhhhhhhhHHHHH-HHHHHhhhhhhhhccchhhhhhccCCCCCchh
Q 014628            8 SPIFASLAKSHN-----PFRLIGVGLSVWT-FATAGCGSSFDFWSIA-ICRMLVGVGEASFISLAAPFIDDNAPVPQKTA   80 (421)
Q Consensus         8 ~~~~g~l~Dr~G-----rr~~~~~~~~~~~-~~~~~~~~~~~~~~l~-~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~   80 (421)
                      .+++|+++||++     ||+.++++.++.. ++....+..++..... +..++.+++.+...++..++..|..+ +++..
T Consensus        77 K~l~g~l~D~~~i~G~rRr~~l~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~~~  155 (468)
T TIGR00788        77 KPFAGVMSDTFPLFGYTKRWYLVLSGLLGSAILYGLLPGKVSSAKVAAAFIFLAALAKALYDVLVDSLYSERIR-ESPSA  155 (468)
T ss_pred             HHHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCCCc
Confidence            456999999998     7777888877763 4444444445544444 48899999999999999999999998 44444


Q ss_pred             ---HHHHHHHHHHHHhhhHHHhHHhhhhcchhHHHHHHHHHHHHHHHHHHHhcccccccccCCccccchhhhhhcccccc
Q 014628           81 ---WLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSE  157 (421)
Q Consensus        81 ---~~~~~~~~~~~G~~~g~~~~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~  157 (421)
                         ..+......++|.++|+.+++.+.+.++||..|++.+.+.++..+. .++.||.+... .++..+..          
T Consensus       156 ~~~~~s~~~~~~~~G~~vg~~l~G~l~~~~~~~~~f~~~a~l~ll~~~~-~~~~~E~~~~~-~~~~~~~~----------  223 (468)
T TIGR00788       156 GPSLVSWMWGASATGGLISSLLGGPLLDKTLTRILFLITAALLLLQLFV-SNLSKERRAFV-RPRIGTYL----------  223 (468)
T ss_pred             CCCeeeHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHH-HHhcccccccc-cccccccc----------
Confidence               3344444556899999999999999999999999998887766433 34445532100 00000000          


Q ss_pred             cccCCcccccccchhhhhhhccccchhhhhhhhhhhhhhhHHhhcchhHHHHHHHHHH-HHHHHHHHHHHhhHHHHHhhC
Q 014628          158 ASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIA-YNFVIGAYSYWGPKAGYNIYH  236 (421)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  236 (421)
                               .......  .       .......++...+....+++|.++...+..++ +......... .-.+..+..+
T Consensus       224 ---------~~~~~~~--~-------~~~~~~~~~~~~~l~~~l~~~~i~~~l~fifl~~~~~~~~~~~-~f~~~~~~lG  284 (468)
T TIGR00788       224 ---------EMNMALL--T-------LGVLANVKVQILGLRGAIQLLEIAKPLIFIFLSYANLPGASGS-VFCATTQCLP  284 (468)
T ss_pred             ---------hhhhhhh--h-------hhHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHhhcCCCCce-eEEEEcccCC
Confidence                     0000000  0       00000111112334445677877765554444 2111111101 0002223456


Q ss_pred             CccchhHH-HhhhhHHHHHHhhhhhHHHhhhccccchhhHHHHHHHHHHHHHHHHHH-h---------hhhhHHHHHHHH
Q 014628          237 MSNADMMF-GGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAF-C---------LSSLYGFLALFT  305 (421)
Q Consensus       237 ~~~~~~~~-~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---------~~~~~~~~~~~~  305 (421)
                      .++....+ .....++.+++..+.+++.+|++.|     +.+..+.++.....+... .         .++.+.......
T Consensus       285 ~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r-----~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~~~~~  359 (468)
T TIGR00788       285 GGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYR-----LLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEVFVLGDSI  359 (468)
T ss_pred             CCcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHH-----HHHHHHHHHHHHHHhCceeeeeccccccCCCCeeeeeehhH
Confidence            66555533 3555677788888888887777766     666666655555443221 0         122233444556


Q ss_pred             HHHHHHHhccCchhhhhhcccCCchhhHHHHHHHHHHHhhcccCcchhHHHhhhccc----cchhhhHHHHHHHHHHHHH
Q 014628          306 VGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVN----NWRKTTLALTSIFFLAAGI  381 (421)
Q Consensus       306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~g----~~~~~~~~~~~~~~~~~~~  381 (421)
                      +.+++.+....+...++.+..|++.+++..++.+...+. |..+++.+++.+.+..|    +++..+....++.+...+.
T Consensus       360 l~~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~l-g~~v~~~~gg~l~~~~g~~~~~~~~~~~~i~i~~~~~l~~  438 (468)
T TIGR00788       360 IAEVLAQLKFMPFLVLLARLCPSGCESSVFALLASILHL-GSSVSGFLGVLLMETIGITCDNSNNLWLLILGHSLAPLLP  438 (468)
T ss_pred             HHHHHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHH-HHHHHHHHHHHHHHHcCCCcccccchHHHHHHHHHHHHHH
Confidence            677777788888899999999999999999999777665 89999999999988876    3444444443333333332


Q ss_pred             HHHhhhhcc
Q 014628          382 WFVGIFLKS  390 (421)
Q Consensus       382 ~~~~~~~~~  390 (421)
                      ......+|+
T Consensus       439 l~~~~llP~  447 (468)
T TIGR00788       439 LPLLHLLPR  447 (468)
T ss_pred             HHHHHhCCC
Confidence            222224454

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=99.86  E-value=1e-19  Score=146.79  Aligned_cols=320  Identities=11%  Similarity=0.001  Sum_probs=204.1

Q ss_pred             cchhhHHHHhhhh-cCCchHHHHHHHHHHHHHhhhh---hhhhHHHHHHHHHHhhhhhhhhccchhhhhhccCCCCCchh
Q 014628            5 LVASPIFASLAKS-HNPFRLIGVGLSVWTFATAGCG---SSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTA   80 (421)
Q Consensus         5 ~i~~~~~g~l~Dr-~Grr~~~~~~~~~~~~~~~~~~---~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~   80 (421)
                      .+-+.++|++.|| +|-|..-++-+....++.++++   ..+.+|.+.++|++.|+|.-.....-..+..-|+..||.+.
T Consensus        93 vVlcffgGflidr~fgir~gtii~~~fv~~GqliFa~Ggi~~aFw~M~~GRF~FGIGgESlAVaQN~yav~wFKGKELn~  172 (459)
T KOG4686|consen   93 VVLCFFGGFLIDRRFGIRLGTIILCIFVFLGQLIFAAGGISHAFWTMLAGRFLFGIGGESLAVAQNKYAVYWFKGKELNF  172 (459)
T ss_pred             EEEeeecceeehhhhhhhHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhheeeccCchhhhhhhcceeEEEecCccccc
Confidence            4556789999997 6877765555555566666654   57899999999999999988888888999999999999999


Q ss_pred             HHHHHHHHHHHHhhhHHHhHHhhhhcchhH------H---HHHHHHHHHHHHHHHHHhcccccccccCCccccchhhhhh
Q 014628           81 WLSMFYMCIPTGVALGYVYGGVVGSHLNWR------Y---AFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVAS  151 (421)
Q Consensus        81 ~~~~~~~~~~~G~~~g~~~~~~l~~~~~wr------~---~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~  151 (421)
                      ++|+.....-+|..+--.+.+++.+..+--      .   ..+..+.......+.+....    ..  .+++.+.....+
T Consensus       173 vfGlqlSvAR~GstvNf~lm~~ly~~~~~~~~~~ghT~LG~~l~~~~~tc~~slical~l----g~--~D~rAerilh~e  246 (459)
T KOG4686|consen  173 VFGLQLSVARLGSTVNFLLMPFLYDTMGRMFPGVGHTLLGLWLCFEVKTCKQSLICALSL----GL--SDDRAERILHLE  246 (459)
T ss_pred             hhhHHHHHHHhhceeeeeecHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHh----hh--hhhHHHHHHhhh
Confidence            999999999999888777777776543210      0   11111111111111111111    00  000100000000


Q ss_pred             cccccccccCCcccccccchhhhhhhccccchhhhhhhhhhhhhhhHHhhcchhHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 014628          152 VSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAG  231 (421)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (421)
                              +.           ...+  +.+            .++.+.  -.|.+|.+.+...++.....-+....|.++
T Consensus       247 --------~g-----------~~Ge--~pk------------Ltdv~~--f~ppfw~~~iicv~yyva~fPFi~lg~~fF  291 (459)
T KOG4686|consen  247 --------EG-----------FLGE--EPK------------LTDVNT--FYPPFWVLVIICVLYYVAWFPFITLGPMFF  291 (459)
T ss_pred             --------cC-----------cccC--Ccc------------cccccc--cCccHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence                    00           0000  000            011111  247788888888888888888999999999


Q ss_pred             HHhhCCccchh-HHHhhhhHHHHHHhhhhhHHHhhhccccchhhHHHHHHH-HHHHHHHHHHH-hhhhhHHHHHHHHHHH
Q 014628          232 YNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAAT-FLGAISCLTAF-CLSSLYGFLALFTVGE  308 (421)
Q Consensus       232 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~  308 (421)
                      ++.+|.++.+. .+.+.....+.+.+++.|.++||+|++     ...+.+. +.....-.... ..-+++..   +++.|
T Consensus       292 ~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n-----~~wv~~a~~~tl~~H~~l~Ft~lsPy~~---m~~lG  363 (459)
T KOG4686|consen  292 QKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKYGFN-----LWWVASACILTLLGHSGLFFTFLSPYTS---MTFLG  363 (459)
T ss_pred             HHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhhcce-----ehhHHHHHHHHHHHhhhHHhhhccHHHH---HHHHh
Confidence            99999997655 344556667778888999999999998     3333322 22222222222 22234433   34444


Q ss_pred             HHHHhccCchhhhhhcccCCchhhHHHHHHHHHHHhhcccCcchhHHHhhhccccchhhhHHHHHH
Q 014628          309 LLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSI  374 (421)
Q Consensus       309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~  374 (421)
                      ..........+..++..+|.++.|++.|..+...+. |-.+.|++.|.+.|.-|+|.+.-.++.++
T Consensus       364 LsysllAcslWP~va~~vpE~qLGTaygf~qsIqNL-gla~i~Iiag~i~d~~g~y~~le~ffl~~  428 (459)
T KOG4686|consen  364 LSYSLLACSLWPCVASLVPEEQLGTAYGFIQSIQNL-GLAFIPIIAGFIADGDGSYDNLEAFFLII  428 (459)
T ss_pred             hhHHHHHHHHhhhhhhhCCHHHhcchHHHHHHHHhh-hhhHHhhhhheeecCCCchhhHHHHHHHH
Confidence            444433334566677778889999999999888887 99999999999999887765544444433

>PRK11462 putative transporter; Provisional

Probab=99.85  E-value=1.1e-18  Score=161.09  Aligned_cols=303  Identities=13%  Similarity=0.037  Sum_probs=181.2

Q ss_pred             cchhhHHHHhhhh----cCCchH-HHHHHHHHHHHHhhhhhhhh------HHHHHHHHHHhhhhhhhhccchhhhhhccC
Q 014628            5 LVASPIFASLAKS----HNPFRL-IGVGLSVWTFATAGCGSSFD------FWSIAICRMLVGVGEASFISLAAPFIDDNA   73 (421)
Q Consensus         5 ~i~~~~~g~l~Dr----~Grr~~-~~~~~~~~~~~~~~~~~~~~------~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~   73 (421)
                      ++.-|+.|.++||    +||||. ++++.+..+++..++-..++      ...+.+.-++..++.......-.++..|..
T Consensus        59 ai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf~~p~~s~~~~~~y~~~~~~~~~~~~t~~~ipy~al~~~lt  138 (460)
T PRK11462         59 AISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYSTPDLSMNGKMIYAAITYTLLTLLYTVVNIPYCALGGVIT  138 (460)
T ss_pred             HHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHHHHHHHHhccHHHHHHHhc
Confidence            4567899999996    687665 56677777777766544442      334555666778888888888889999998


Q ss_pred             C-CCCchhHHHHHHHHHHHHhhhHHHhHHhhhhc-------chhHHHHHHHHHHHHHHHHHHHhcccccccccCCccccc
Q 014628           74 P-VPQKTAWLSMFYMCIPTGVALGYVYGGVVGSH-------LNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGK  145 (421)
Q Consensus        74 ~-~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~-------~~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~  145 (421)
                      + ++||++..++...+..+|..+++.+...+.+.       .+|+....+.+++.++...+++...+|..+.    ++.+
T Consensus       139 ~d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~g~~~~~~g~~~~~~i~~ii~~i~~~i~~~~~kE~~~~----~~~~  214 (460)
T PRK11462        139 NDPTQRISLQSWRFVLATAGGMLSTVLMMPLVNLIGGDNKPLGFQGGIAVLSVVAFMMLAFCFFTTKERVEA----PPTT  214 (460)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHHhcceeccCC----CccC
Confidence            7 68899999999999999988887776554432       3588888777777666665555444442110    0000


Q ss_pred             hhhhhhcccccccccCCcccccccchhhhhhhccccchhhhhhhhhhhhhhhHHhhcchhHHHHHHHHHHHHHHHHHHHH
Q 014628          146 AQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSY  225 (421)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  225 (421)
                      .                                             +..+.++..++||.++.+....++..........
T Consensus       215 ~---------------------------------------------~~~~~l~~~~~Nk~~~~l~~~~~~~~~~~~~~~~  249 (460)
T PRK11462        215 T---------------------------------------------SMREDLRDIWQNDQWRIVGLLTIFNILAVCVRGG  249 (460)
T ss_pred             C---------------------------------------------CHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHh
Confidence            0                                             0123466777888887766555444444333333


Q ss_pred             HhhHHHHHhhCCccchhHHHhhhhHHHHHHhhhhhHHHhhhccccchhhHHHHHHHH-HHHHHHHHHHhhh-hhHHHHHH
Q 014628          226 WGPKAGYNIYHMSNADMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATF-LGAISCLTAFCLS-SLYGFLAL  303 (421)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~  303 (421)
                      ....|.....+.+.....+.....+..+++.++++++.||+++|     +....... ......+...... +.....+.
T Consensus       250 ~~~y~~~y~~g~~~~~~~~l~~~~i~~iig~~l~~~l~~r~gkk-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (460)
T PRK11462        250 AMMYYVTWILGTPEVFVAFLTTYCVGNLIGSALAKPLTDWKCKV-----TIFWWTNALLAVISLAMFFVPMQASITMFVF  324 (460)
T ss_pred             HhhhhhhhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhChH-----HHHHHHHHHHHHHHHHHHHhchhHHHHHHHH
Confidence            33333333344332222334556677888999999999999987     44332222 2221222222212 22223333


Q ss_pred             HHHHHHHHHhccCchhhhhhcccC-------CchhhHHHHHHHHHHHhhcccCcchhHHHhhhccc
Q 014628          304 FTVGELLVFATQAPVNYVCLHSVK-------PSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVN  362 (421)
Q Consensus       304 ~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~g  362 (421)
                      .++.+++.+...+....+..|..+       .+..|...+..+.... +|..+++.+.|.+.+..|
T Consensus       325 ~~l~g~~~~~~~~l~~~m~ad~~d~~e~~tG~r~~g~~~a~~~f~~K-lg~alg~~i~g~iL~~~G  389 (460)
T PRK11462        325 IFVIGVLHQLVTPIQWVMMSDTVDYGEWCNGKRLTGISFAGTLFVLK-LGLAFGGALIGWMLAYGG  389 (460)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHhhhHHhcCCCchHHHHHHHHHHHH-HHHHHHHHHHHHHHHHcC
Confidence            444555554444444555555443       1223444455534444 488888888888877644

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=99.84  E-value=1.4e-22  Score=187.38  Aligned_cols=342  Identities=21%  Similarity=0.382  Sum_probs=3.0

Q ss_pred             ccccchhhHHHHhhhhcCCchHHHHHHHHHHHHHhhhhhhh---------------------------------------
Q 014628            2 VGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSF---------------------------------------   42 (421)
Q Consensus         2 lg~~i~~~~~g~l~Dr~Grr~~~~~~~~~~~~~~~~~~~~~---------------------------------------   42 (421)
                      ++..+..++..++.+|..|-|++-.|.++.+++++++++-+                                       
T Consensus        49 i~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~l~~lPhf~~~~y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~  128 (539)
T PF03137_consen   49 IGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSLLFALPHFLSGPYSYEEASNSNGNSSISSNLCDSSSSSQASSDCQD  128 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHHHHHhccHhhcCCCccccccccccccccccccccccccccccCcccc
Confidence            45677888889999999999999999999999999876420                                       


Q ss_pred             -----------hHHHHHHHHHHhhhhhhhhccchhhhhhccCCCCCchhHHHHHHHHHHHHhhhHHHhHHhhhhcc----
Q 014628           43 -----------DFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHL----  107 (421)
Q Consensus        43 -----------~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~----  107 (421)
                                 -+..+++++++.|+|....++.+.+|+-|..++++-+..+|+..+...+|.++|.++++.+.+.+    
T Consensus       129 ~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~~splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~  208 (539)
T PF03137_consen  129 CCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDDNVSKKNSPLYIGILYAMSILGPALGFLLGSFCLRIYVDFP  208 (539)
T ss_dssp             -----------------------SSS------------------------------------------------------
T ss_pred             ccccccccchHHHHHHHHHHHHHhccccCCccceeeeeccccccccCccchhhhhHHhhccHHHHHHHHHHHHhceeCCc
Confidence                       13567889999999999999999999999999999999999999999999999999998776321    


Q ss_pred             ------------------hhHHHHHHHHHHHHHHHHHHHhcccccccccCCccccchhhhhhcccccccccCCccccccc
Q 014628          108 ------------------NWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDI  169 (421)
Q Consensus       108 ------------------~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (421)
                                        .|-.-|++.+.+.++.++..+++ |+..+...+.++.++...                 ...
T Consensus       209 ~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~~l~aipl~~F-Pk~lp~~~~~~~~~~~~~-----------------~~~  270 (539)
T PF03137_consen  209 KVPPDGVGITPSDPRWVGAWWLGFLICGILLFLSAIPLFFF-PKKLPGTSERQEEKESSE-----------------RKE  270 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHcC-CccCCCcccccchhhhhh-----------------cch
Confidence                              26666777777766666665555 554433211111000000                 000


Q ss_pred             chhhhhhhccccchhhhhhhhhhhhhhhHHhhcchhHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhCCccchh-H-HHhh
Q 014628          170 SDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-M-FGGV  247 (421)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~  247 (421)
                      ++...++..+.+..+......+++....+++++||.+....++.........++.+|+|.|++.+++.++..+ . ...+
T Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~df~~~l~~Ll~Np~f~~~~la~~~~~~~~~G~~tF~pKylE~QF~~sas~A~~l~G~v  350 (539)
T PF03137_consen  271 EDSDKDSFKDPKSKKSFGKSIKDFPKALKRLLTNPVFMCLILAGVFESFIVSGFATFLPKYLESQFGLSASQASLLTGIV  350 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             hhhhhhcccccccccchhhhhhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhhh
Confidence            0000000011111112235567778889999999999999999999999999999999999999999886444 2 2344


Q ss_pred             hhHHHHHHhhhhhHHHhhhccccchhhHHHHHHHHHHHHHHHHHHh--------------h-------------------
Q 014628          248 TIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFC--------------L-------------------  294 (421)
Q Consensus       248 ~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~-------------------  294 (421)
                      ...++++|.+++|++.+|++-+.+...+......++..+.....++              .                   
T Consensus       351 ~ip~~~~G~llGG~ivkk~kl~~~~~~~~~~v~~~v~~~~~~~~~~~~C~~~~~aGv~~~y~~~~~~~~~~~~~~~Cn~~  430 (539)
T PF03137_consen  351 SIPGAALGILLGGYIVKKFKLSARGAAKFCIVVSIVSVILYSPLFFLGCPNPPIAGVTVPYHNSTSSSPSCNLTCSCNSC  430 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             hcchhheehheEEEEEEEecCcHHHHHHHHHHHHHHHHHHHHHHHeecCCCCceeeecCccccccCCCCCCCCCCCCCCc
Confidence            4567789999999999999765443333333333333322111111              0                   


Q ss_pred             ------------------hhhHHHHHHHHHHHHHHHhccCchhhhhhcccCCchhhHHHHHHHHHHHhhcccCcchhHHH
Q 014628          295 ------------------SSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGV  356 (421)
Q Consensus       295 ------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~  356 (421)
                                        .....+++..++..+..+....+......+.+++++|+.|.|+.....+.+|.+-+|+++|.
T Consensus       431 ~~~~~~~a~~G~C~~~C~~~~~~Fl~~~~~~~~~~~~~~~p~~~i~LR~V~~~~rs~AlGv~~~~~rllg~IPgPIifG~  510 (539)
T PF03137_consen  431 CSSGNGSATPGKCPSDCCNKLIPFLILLFILSFFTFMSQVPSTLITLRCVPPEQRSFALGVQWLIIRLLGFIPGPIIFGA  510 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cCCCcccccCCCcCcccccccHHHHHHHHHHHHHHHhcccchheeeeccCChhhcchhhhHHHHHHHhhcCcchHHHHhH
Confidence                              01223444555556666777788888899999999999999999999999999999999999


Q ss_pred             hhhcc
Q 014628          357 LQDHV  361 (421)
Q Consensus       357 l~~~~  361 (421)
                      +.|..
T Consensus       511 iiD~t  515 (539)
T PF03137_consen  511 IIDST  515 (539)
T ss_dssp             -----
T ss_pred             HHhhh
Confidence            99953

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>PRK09848 glucuronide transporter; Provisional

Probab=99.84  E-value=6.1e-19  Score=163.31  Aligned_cols=304  Identities=10%  Similarity=0.007  Sum_probs=185.6

Q ss_pred             ccchhhHHHHhhhhc----CCchH-HHHHHHHHHHHHhhh-h----hhhh--HHHHHHHHHHhhhhhhhhccchhhhhhc
Q 014628            4 LLVASPIFASLAKSH----NPFRL-IGVGLSVWTFATAGC-G----SSFD--FWSIAICRMLVGVGEASFISLAAPFIDD   71 (421)
Q Consensus         4 ~~i~~~~~g~l~Dr~----Grr~~-~~~~~~~~~~~~~~~-~----~~~~--~~~l~~~r~l~G~~~~~~~~~~~~~i~~   71 (421)
                      .++..++.|+++||.    ||||. +.++.+...+..++. .    ++++  ...+++.-++.+++.+...+...++..+
T Consensus        57 ~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~  136 (448)
T PRK09848         57 DAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLMIFSVLVFWVPTDWSHSSKVVYAYLTYMGLGLCYSLVNIPYGSLATA  136 (448)
T ss_pred             HHHhhhhheeeeecCCCCCcCchHHHHHHHHHHHHHHHHHHhCcCCCCcchHHHHHHHHHHHHHHHHHHhcccHhhhhhh
Confidence            467889999999996    77774 455555444444432 1    1122  2334445567788888888888888777


Q ss_pred             cCCC-CCchhHHHHHHHHH-----HHHhhhHHHhHHhhhhcc--hhHHHHHHHHHHHHHHHHHHHhcccccccccCCccc
Q 014628           72 NAPV-PQKTAWLSMFYMCI-----PTGVALGYVYGGVVGSHL--NWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAES  143 (421)
Q Consensus        72 ~~~~-~~r~~~~~~~~~~~-----~~G~~~g~~~~~~l~~~~--~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~  143 (421)
                      ..++ ++|.+..+.-..+.     .++..++|.++....+..  +|.....+.++++++..++.+...||+.+.    ++
T Consensus       137 ~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~~p~i~~~~g~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~e~~~~----~~  212 (448)
T PRK09848        137 MTQQPQSRARLGAARGIAASLTFVCLAFLIGPSIKNSSPEEMVSVYHFWTIVLAIAGMVLYFICFKSTRENVVR----IV  212 (448)
T ss_pred             hcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHHcCcEeccCC----Cc
Confidence            7654 67888776665443     345556666655432111  122122233333333333333333442110    00


Q ss_pred             cchhhhhhcccccccccCCcccccccchhhhhhhccccchhhhhhhhhhhhhhhHHhhcchhHHHHHHHHHHHHHHHHHH
Q 014628          144 GKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAY  223 (421)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  223 (421)
                      ++                                             ....+.++.+++||.++...+..++........
T Consensus       213 ~~---------------------------------------------~~~~~~~~~l~~n~~f~~~~~~~~~~~~~~~~~  247 (448)
T PRK09848        213 AQ---------------------------------------------PSLKISLQTLKRNRPLFMLCIGALCVLISTFAV  247 (448)
T ss_pred             cC---------------------------------------------CCHHHHHHHHhCCchHHHHHHHHHHHHHHHHHH
Confidence            00                                             011234677889999998888777777777777


Q ss_pred             HHHhhHHHHHhhCCccchhHHHhhh-hHHHHHHhhhhhHHHhhhccccchhhHHHHHHHHHHHHHHHHHHhhh--hhHHH
Q 014628          224 SYWGPKAGYNIYHMSNADMMFGGVT-IVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLS--SLYGF  300 (421)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~  300 (421)
                      ..+.|.|.++..+.+.....+.... .++.+++.++.+++.||+++|     +.+..+..+..+..+.....+  +.+..
T Consensus       248 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~-----~~~~~g~~~~~i~~~~~~~~~~~~~~~~  322 (448)
T PRK09848        248 SASSLFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKK-----NTFLIGALLGTCGYLLFFWVSVWSLPVA  322 (448)
T ss_pred             hhhheeeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcH-----HHHHHHHHHHHHHHHHHHHcCchhHHHH
Confidence            7778888887777665433333232 456677889999999999987     666655555444444333322  34444


Q ss_pred             HHHHHHHHHHHHhccCchhhhhhcccCCc-------hhhHHHHHHHHHHHhhcccCcchhHHHhhhccc
Q 014628          301 LALFTVGELLVFATQAPVNYVCLHSVKPS-------LRALSMAISTVSIHIFGDVPSSPLVGVLQDHVN  362 (421)
Q Consensus       301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~g  362 (421)
                      .+...+.+.+.+...+...+...+..+.+       .+|...|+.+..... |..+++.+.+.+.+..|
T Consensus       323 ~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~kl-g~aig~~i~g~~l~~~G  390 (448)
T PRK09848        323 LVALAIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKC-GQAIGGSIPAFILGLSG  390 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHH-HHHHHHHHHHHHHHHcC
Confidence            44555667777777777777777776643       458889998655555 88899999988877654

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=99.83  E-value=4.3e-18  Score=149.70  Aligned_cols=328  Identities=15%  Similarity=0.116  Sum_probs=212.6

Q ss_pred             ccchhhHHHHhhhhcCCchHHHHHHHHHH---HHHhhhhhhh----hHH-HHHHHHHHhhhhhhhhccchhhhhhccCCC
Q 014628            4 LLVASPIFASLAKSHNPFRLIGVGLSVWT---FATAGCGSSF----DFW-SIAICRMLVGVGEASFISLAAPFIDDNAPV   75 (421)
Q Consensus         4 ~~i~~~~~g~l~Dr~Grr~~~~~~~~~~~---~~~~~~~~~~----~~~-~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~   75 (421)
                      ..+.+|+.|.++||+|.||-++..+.+..   ...+...+.+    |.+ ..+++-+..|+......|+.-+++.++.  
T Consensus        56 ~l~~qp~~G~i~Dklg~kK~Ll~~i~~l~~l~~pff~~v~~pll~~n~~lg~iig~i~l~~~f~~~~~~~Ea~~er~s--  133 (412)
T PF01306_consen   56 ALLAQPVYGFISDKLGLKKHLLWFIAILLLLFGPFFIYVFGPLLQSNFWLGAIIGGIYLGLVFNAGVPLSEAYAERVS--  133 (412)
T ss_dssp             HHHTHHHHHHHHHHCTTCSHHHHHHHHHHHTCHHHHHHTHHHHHHTT-HHHHHHTTTTTTTTTTTHHHHHHHHHHHHH--
T ss_pred             HHHHHHhHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHH--
Confidence            45678999999999997776554433221   2222222222    221 2233333344444445555556655554  


Q ss_pred             CCchhHHHHHHHHHHHHhhhHHHhHHhhhhcchhHHHHHHHHHHHHHHHHHHHhcccccccccCCccccchhhhhhcccc
Q 014628           76 PQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEG  155 (421)
Q Consensus        76 ~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~  155 (421)
                      ++.+.-.|-.....++|.+++..++|.+.+. +-+..|++....+++..++.++..|+.++.....+..+..        
T Consensus       134 r~~~feYG~~R~wGSig~ai~s~~~G~L~~i-~p~~~fwi~s~~~~il~lll~~~~~~~~~~~~~~~~~~~~--------  204 (412)
T PF01306_consen  134 RRNGFEYGRARMWGSIGFAIASLLAGILFNI-NPNIIFWIASAAAIILLLLLLLLKPDVPPQAEVADALGAK--------  204 (412)
T ss_dssp             HHHSS-HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHSS---SSSSS-SSTTSSS---------
T ss_pred             HHhcCCcchHHHHhhHHHHHHHHHhheeeee-CccHHHHHHHHHHHHHHHHHHHcCCcCchhhhhhcccccC--------
Confidence            2345567777888899999999999998873 5678888877776666666665555432221111100000        


Q ss_pred             cccccCCcccccccchhhhhhhccccchhhhhhhhhhhhhhhHHhhcchhHHHHHHHHHHHHHHHHHHHHHhhHHHHHhh
Q 014628          156 SEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIY  235 (421)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (421)
                                                       +.+...++..+++|+|++|...+........+..+....|.|..+.+
T Consensus       205 ---------------------------------~~~~~~~~~~~l~k~~~fw~~~l~v~g~~~~Y~vfdqqf~~y~~~~f  251 (412)
T PF01306_consen  205 ---------------------------------KDKVSLKDVLSLFKMRNFWFFVLFVIGVAAIYDVFDQQFPIYFASFF  251 (412)
T ss_dssp             --------------------------------------HHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred             ---------------------------------CCCCcHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence                                             00001245678889999999888766666677777777788887765


Q ss_pred             CCccchh----HHHhhhhHHHHHHhhhhhHHHhhhccccchhhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Q 014628          236 HMSNADM----MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLV  311 (421)
Q Consensus       236 ~~~~~~~----~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  311 (421)
                      .....+.    .+.++..+..++...+..++.+|+|.|     +.++....+..+=.......++++.....-.+-+.-.
T Consensus       252 ~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k-----~~Lllag~i~~iRi~~~~~~~~~~~i~~~klLH~~e~  326 (412)
T PF01306_consen  252 QSAGQGNQMYGYLWSVQVFLEALMMFFSPWLINRIGAK-----NLLLLAGVIMAIRIIGSGFATNPWVISLIKLLHALEF  326 (412)
T ss_dssp             SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH-----HHHHHHHHHHHHHHHHHHT--SHHHHHHHHHHHHHHH
T ss_pred             cccccChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChH-----hHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHH
Confidence            5442221    233555677788888999999999998     7888777777777777777888888888888888888


Q ss_pred             HhccCchhhhhhcccCCchhhHHHHHHHHHHHhhcccCcchhHHHhhhccccchhhhHHHHHHHHHHHHH
Q 014628          312 FATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFFLAAGI  381 (421)
Q Consensus       312 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~  381 (421)
                      ........-++.+.+|++..++...+.......+|..+.+.+.|.++|+.| ++..+++.+.+.+...++
T Consensus       327 ~l~lva~fkYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~G-~~~tylimg~iv~~~~li  395 (412)
T PF01306_consen  327 PLLLVAAFKYITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLYDRIG-FQHTYLIMGLIVLPFTLI  395 (412)
T ss_dssp             HHHHHHHHHHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHhhcC-cHHHHHHHHHHHHHHHHH
Confidence            788888899999999999988888886545555588888889999999987 666777776664444433

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=99.77  E-value=1.2e-16  Score=140.62  Aligned_cols=374  Identities=11%  Similarity=0.093  Sum_probs=211.6

Q ss_pred             chhhHHHHhhhhc-CCchHHHHHHHHHHHHHhhhhhhh--hHHHHHHHHHHhhhhhhhhccchhhhhhccCCCCC--chh
Q 014628            6 VASPIFASLAKSH-NPFRLIGVGLSVWTFATAGCGSSF--DFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQ--KTA   80 (421)
Q Consensus         6 i~~~~~g~l~Dr~-Grr~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~--r~~   80 (421)
                      +...++|+++||+ |+|+++..|.++..+|.++.+.++  +...++++-++.++|.|..-+...++++|.+|+++  |-.
T Consensus        76 ~t~i~GG~laDr~LG~~~tI~lGail~~iGh~~L~~~~~~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~DprrD~  155 (498)
T COG3104          76 LTPIIGGWLADRVLGTRRTIVLGAILMAIGHLVLAISSVSGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDPRRDG  155 (498)
T ss_pred             HHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHhccccccccHHHHHHHhcCCCCcccCC
Confidence            3568899999996 999999999999999999999984  78899999999999999999999999999998753  778


Q ss_pred             HHHHHHHHHHHHhhhHHHhHHhhhhcchhHHHHHHHHHHHHHHHHHHHhcccccccccCCccccchhhhhhccccccccc
Q 014628           81 WLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASN  160 (421)
Q Consensus        81 ~~~~~~~~~~~G~~~g~~~~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (421)
                      .+++++.+.++|..++|.+.+++.+.+||+..|.+.++-.....+..++. ++.......++++...............-
T Consensus       156 gFt~fY~~iNiGsl~~p~i~~~~~~~~g~~~gF~~aavGm~~gl~~f~~~-~r~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (498)
T COG3104         156 GFTLFYMGINIGSLIAPIITGLLAINYGWHVGFGLAAVGMIIGLVIFLLG-RRHVKGIGGVPDPNPLSFNFLLPVLGGLV  234 (498)
T ss_pred             CccEEEEEeehHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHc-cchhcCCCCCCCccchhhhhhhhhHHHHH
Confidence            99999999999999999999999999999999999887665555444443 33322221111111111000000000000


Q ss_pred             C--Ccc-cccccchhhhhhhccccchhhhhhhhhhh----h--hhhHHhh-cchhHHHHHHHHHHHHHHHHHHHHHhhHH
Q 014628          161 L--NDH-VSEDISDQASERSIKSIGESRFLNQLSQF----S--QDTKVLL-QEKVYVVNVLGYIAYNFVIGAYSYWGPKA  230 (421)
Q Consensus       161 ~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (421)
                      .  -.. .......+..........-........+.    .  +..++++ --+.+....+.+.++......+..|....
T Consensus       235 ~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~er~r~~~~~~Lfl~~~iFW~~~~Q~~ssl~~~a~~~  314 (498)
T COG3104         235 VMILAALLTLLLNQNTFSGVLLVISILIAIIYFAEAFRSPKVFDERRRLLAAIPLFLFAVIFWALYEQMGSSLNLYADRN  314 (498)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHh
Confidence            0  000 00000000000000000000000000000    0  0111110 00111122222222222333333443333


Q ss_pred             HHHh-hCCccchhHHHhhhhHHHHHHhhhhhHHHhhhcccc--chhhHHHHHHHHHHHHHHHHHHhh----------hhh
Q 014628          231 GYNI-YHMSNADMMFGGVTIVCGIVGTISGGFILDQMGATI--SNAFKLLSAATFLGAISCLTAFCL----------SSL  297 (421)
Q Consensus       231 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~----------~~~  297 (421)
                      ..+. ++.+.....+.++..+.-++.+++..++..+.+++.  ++.+.-...+..++...++.+...          .+.
T Consensus       315 v~~~~~g~~vp~~~fQslNp~~Iii~~pI~a~l~~~l~~~~~~ps~~~KFalGl~l~g~~fl~l~~~~~~~~~~~~~~s~  394 (498)
T COG3104         315 VNRQIFGFEVPPAWFQSLNPFFIILFSPILAALWTKLGRGNKQPSTPIKFALGLILAGLGFLILLLAGIWFGGPSGLVSV  394 (498)
T ss_pred             hcccccceecCHHHHHhhCHHHHHHHHHHHHHHHhHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCH
Confidence            3333 334444445666666777777777777777754442  221122233333333333322221          145


Q ss_pred             HHHHHHHHHHHHHHHhccCchhhhhhcccCCchhhHHHHHHHHHHHhhcccCcchhHHH------hhhccccchhhhHHH
Q 014628          298 YGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGV------LQDHVNNWRKTTLAL  371 (421)
Q Consensus       298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~------l~~~~g~~~~~~~~~  371 (421)
                      ++.+....+..++.-+..+...+.+.+..|+...+..++.. ......|+.++..+.+.      ..+.. .+...|..+
T Consensus       395 ~~lil~y~l~s~gEL~iSpvGLs~~t~laP~~~~s~~ma~w-fLt~a~~~~l~g~va~~~~~~~~~~~~~-~~~~~F~~~  472 (498)
T COG3104         395 WWLVLSYVLQSFGELFISPVGLSMVTKLAPPALKSFIMAMW-FLTVAAGQTLGGQVAGLTAVTDPAYTAF-IEGRVFGTI  472 (498)
T ss_pred             HHHHHHHHHHHHHHHHhCHHHHHHHHHhChHHHHHHHHHHH-HHHHHHHHHhhceecccccccchhhhhh-hhhhhHHHH
Confidence            66677777788888888888899999999999999999988 44444466655555442      22221 233556666


Q ss_pred             HHHHHHHHHHH
Q 014628          372 TSIFFLAAGIW  382 (421)
Q Consensus       372 ~~~~~~~~~~~  382 (421)
                      +...++.....
T Consensus       473 g~v~i~~~~~~  483 (498)
T COG3104         473 GVVAIVIGILL  483 (498)
T ss_pred             HHHHHHHHHHH
Confidence            55554444443

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=99.77  E-value=2.8e-16  Score=139.64  Aligned_cols=308  Identities=10%  Similarity=0.030  Sum_probs=219.5

Q ss_pred             cchhhHHHHhhhh----cCCch-HHHHHHHHHHHHHhhhhhhhh------HHHHHHHHHHhhhhhhhhccchhhhhhccC
Q 014628            5 LVASPIFASLAKS----HNPFR-LIGVGLSVWTFATAGCGSSFD------FWSIAICRMLVGVGEASFISLAAPFIDDNA   73 (421)
Q Consensus         5 ~i~~~~~g~l~Dr----~Grr~-~~~~~~~~~~~~~~~~~~~~~------~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~   73 (421)
                      ++.-|+.|.+.||    +||+| .++++.+..++.+.++-.+++      ....++.-.+.+++.......-.++..|+.
T Consensus        62 Ai~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i~~~l~F~~p~~~~~~k~~ya~vtY~l~~l~YT~vniPy~al~~~iT  141 (467)
T COG2211          62 AITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIVAVLLFITPDFSMTGKLIYALVTYMLLGLGYTLVNIPYGALGPEIT  141 (467)
T ss_pred             HHhcchheeeecccccccccccHHHHHHhHHHHHHHHHHHcCCCcccCcchHHHHHHHHHHHHHHHheeCchhhcchhhc
Confidence            3566888999996    67655 577888888888888877763      444566778889999998888899999987


Q ss_pred             C-CCCchhHHHHHHHHHHHHhhhHHHhHHhhhh-------cchhHHHHHHHHHHHHHHHHHHHhcccccccccCCccccc
Q 014628           74 P-VPQKTAWLSMFYMCIPTGVALGYVYGGVVGS-------HLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGK  145 (421)
Q Consensus        74 ~-~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~-------~~~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~  145 (421)
                      + ++||.+..++-+.+.++|..+...+...+..       ..||+..-.+.++++.+..+.+++-..|...+..+.++  
T Consensus       142 ~d~~ER~~l~s~R~~~~~~g~~l~~~~~~plv~~~g~~~~~~g~~~~~~~~~vi~~i~~l~~~~~v~ER~~~~~~~~~--  219 (467)
T COG2211         142 QDPQERASLTSWRMVFASLGGLLVAVLFPPLVKLFGGGDKALGYQGTALVLGVIGVILLLFCFFNVKERVVETQPTKT--  219 (467)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcccCccccCcc--
Confidence            5 6789999999999999998776666655542       45899999999888888888877766553321111110  


Q ss_pred             hhhhhhcccccccccCCcccccccchhhhhhhccccchhhhhhhhhhhhhhhHHhhcchhHHHHHHHHHHHHHHHHHHHH
Q 014628          146 AQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSY  225 (421)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  225 (421)
                                                                ...++..+++..+++|+.+...++..++.....+....
T Consensus       220 ------------------------------------------~~~~~~~~~~~~~~~Nrp~~~~l~~~l~~~~~~~i~~s  257 (467)
T COG2211         220 ------------------------------------------GVKLKLKDSFLLIFKNRPLLLLLLMNLLLFIAFNIRGS  257 (467)
T ss_pred             ------------------------------------------cccccHHHHHHHHHccchHHHHHHHHHHHHHHHHHHhh
Confidence                                                      00011223456778999999988877777777777777


Q ss_pred             HhhHHHHHhhCCccchhHHH-hhhhHHHHHHhhhhhHHHhhhccccchhhHHHHHHHHHHHHHHHHHHhhh--hhHHHHH
Q 014628          226 WGPKAGYNIYHMSNADMMFG-GVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLS--SLYGFLA  302 (421)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~  302 (421)
                      ....|.+...+.+....... .....+.+++.++..++.+|+|+|     +....+.++..+..+...+.+  +....++
T Consensus       258 ~~~yy~~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk-----~~~~~~~~~~~i~~~~~~f~~~~~~~l~~~  332 (467)
T COG2211         258 IMVYYVTYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKK-----KLFLIGLLLLAVGYLLLYFTPAGSVVLIVV  332 (467)
T ss_pred             hhheeEEEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchH-----HHHHHHHHHHHHHHHHHHhhcCcchHHHHH
Confidence            77777776666665444333 344455566688999999999999     777777777777666665554  4555555


Q ss_pred             HHHHHHHHHHhccCchhhhhhcccCC-------chhhHHHHHHHHHHHhhcccCcchhHHHhhhccc
Q 014628          303 LFTVGELLVFATQAPVNYVCLHSVKP-------SLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVN  362 (421)
Q Consensus       303 ~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~g  362 (421)
                      ..++.+.+.+...+...++++|.+.-       +.-|...|... +..-+|.+++..+.|++.+..|
T Consensus       333 ~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~t-F~~K~g~ala~~~~g~~L~~~G  398 (467)
T COG2211         333 ALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGIVYSGMT-FFRKLGLALAGFIPGWILGAIG  398 (467)
T ss_pred             HHHHHHHHhhccccccHHHhcchhhHHHHHhCCCchhhHHHHHH-HHHHHHHHHHHHHHHHHHHHcC
Confidence            66777788888877777777776432       34567777774 4444588888889999988765

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=99.77  E-value=4.2e-17  Score=141.03  Aligned_cols=312  Identities=14%  Similarity=0.110  Sum_probs=209.7

Q ss_pred             ccchhhHHHHhhhhcCCchHHHHHHHHHHHHHhhhhhhh------hHH--HHHHHHHHhhhhhhhhccchhhhhhccCCC
Q 014628            4 LLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSF------DFW--SIAICRMLVGVGEASFISLAAPFIDDNAPV   75 (421)
Q Consensus         4 ~~i~~~~~g~l~Dr~Grr~~~~~~~~~~~~~~~~~~~~~------~~~--~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~   75 (421)
                      +....+++-|+.|++|-|...+++.++..+|..+-..+.      .++  ....+..+.+.++-.....-..+..-|+++
T Consensus        92 ~vp~gf~~mw~ldk~GLR~a~llgt~ln~iGa~Ir~iss~p~v~~~f~~~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF~~  171 (480)
T KOG2563|consen   92 SVPFGFAAMWILDKFGLRTALLLGTVLNGIGAWIRLISSLPFVPPLFRRPLTHTGQSIAAAAQPFILGLPSKIAAVWFPP  171 (480)
T ss_pred             HHHHhhHHHHhhcccchHHHHHHHHHHHHHHHHHhhhccCccccccchhhhhHHhHHHHHHhhhHhhccccHHHHhhCCc
Confidence            345567788999999999999999999999999876653      344  667888999888887776666777889999


Q ss_pred             CCchhHHHHHHHHHHHHhhhHHHhHHhhhhc------chhHH--HHHHHHHHHHHHHHHHHhcccccccccCCccccchh
Q 014628           76 PQKTAWLSMFYMCIPTGVALGYVYGGVVGSH------LNWRY--AFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQ  147 (421)
Q Consensus        76 ~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~------~~wr~--~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~  147 (421)
                      +||..+..+-..+..+|.++|.++...+.++      ..|..  .|+..+++..+..++..+..++.++.  ++......
T Consensus       172 ~qra~A~~~~v~~n~LGvavg~llppilV~~~~~~~~~~~~~~~~f~~~~~l~~l~l~l~~~~~~~~P~t--Pps~s~~~  249 (480)
T KOG2563|consen  172 DQRAIATVLGVMGNPLGVAVGFLLPPILVPSSKDSEDNSWLFFTLFLGVECLAALLLALVLFVFTKKPPT--PPSASQAA  249 (480)
T ss_pred             chhhhhhhHHHhcchHHHHHHhhccceecCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC--CCchhHhh
Confidence            9999999999999999999999988888753      34654  35545554444444444444432222  11111100


Q ss_pred             hhhhcccccccccCCcccccccchhhhhhhccccchhhhhhhhhhhhhhhHHhhcchhHHHHHHHHHHHHHHHHHHHHHh
Q 014628          148 VVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWG  227 (421)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (421)
                                                              .+..+..++.+..++++++....+.+......+++..+.+
T Consensus       250 ----------------------------------------~~~~~f~~si~~~~~n~~F~il~~~ygi~~g~F~~l~~~l  289 (480)
T KOG2563|consen  250 ----------------------------------------LQDASFPKSIKSCFKNRQFIILAICYGIGLGLFNSLSTLL  289 (480)
T ss_pred             ----------------------------------------hhcCcHHHHHHHHHcCccHHHHHHHHhhhHHHHHHHHHHh
Confidence                                                    0011235678889999999998888877777777777766


Q ss_pred             hHHHHHhhCCccchhHHHhhhhHHHHHHhhhhhHHHhhhccccchhhHHHHHHHHHHHHH-HHHHHh---hhhhHHHHHH
Q 014628          228 PKAGYNIYHMSNADMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAIS-CLTAFC---LSSLYGFLAL  303 (421)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~---~~~~~~~~~~  303 (421)
                      ...+...+-.+........+..+++++++.++|.+.||.++-+    ............. +.+...   ....+.+...
T Consensus       290 ~~~l~~sgY~~~~aG~ig~l~iv~Gmlga~~~gii~Dktk~fk----~~~~v~~~~~~v~~~~l~~~t~~~~~~viv~~t  365 (480)
T KOG2563|consen  290 NLALCPSGYEGVFAGYIGALMIVAGMLGALASGIIADKTKKFK----LTTLVLYLFALVGTLMLLTCTLFLGDSVIVFTT  365 (480)
T ss_pred             hhccccccCCccccchhHHHHHHHHHHHHHHHHhhhhhhhhHH----HHHHHHHHHHHHHHHHHHHhhccCCceEehhhh
Confidence            5444333322222334556677889999999999999987652    2222222222222 111111   1234445555


Q ss_pred             HHHHHHHHHhccCchhhhhhcccCCchhhHHHHHHHHHHHhhcccCcchhHHHhhhccc
Q 014628          304 FTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVN  362 (421)
Q Consensus       304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~g  362 (421)
                      ..+.+++.....|...-+..|..-|..-++..|+.+...+.++.. -..+.+...+..+
T Consensus       366 ~~~~g~~~~~~~Pig~ElgvE~TyPv~E~tSsGll~~~gq~f~~~-~~~~~~~~~~~~~  423 (480)
T KOG2563|consen  366 CGLLGFFGTGYLPIGFELGVETTYPVAEGTSSGLLNLSGQIFGVI-LVFIMGILAEDLG  423 (480)
T ss_pred             HHHHHHhhcCCCCcceeeeeeeccccCCcccceeEEeehhHHHHH-HHHHHHHHhhccC
Confidence            666777777888888888888877877788888887777775544 3556666666555

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=99.71  E-value=2.1e-14  Score=124.25  Aligned_cols=306  Identities=14%  Similarity=0.061  Sum_probs=204.2

Q ss_pred             chhhHHHHhhhhcC-----CchHH-HHHHHHHHHHHhhhhhh-----h-------h--HH--HHHHHHHHhhhhhhhhcc
Q 014628            6 VASPIFASLAKSHN-----PFRLI-GVGLSVWTFATAGCGSS-----F-------D--FW--SIAICRMLVGVGEASFIS   63 (421)
Q Consensus         6 i~~~~~g~l~Dr~G-----rr~~~-~~~~~~~~~~~~~~~~~-----~-------~--~~--~l~~~r~l~G~~~~~~~~   63 (421)
                      ...+.+|+.+|+.+     ||..+ ..|.++...+..+..++     .       +  .+  ...+.-.+.|+|.+....
T Consensus        29 p~R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~~~~~~~~~g~~~a~l~F~l~G~G~~~s~T  108 (403)
T PF03209_consen   29 PLRVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQQSSGPFWLGLALAALAFLLYGLGVHASGT  108 (403)
T ss_pred             HHHHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHhhHhHhHH
Confidence            34678999999998     77654 55566655555554432     2       1  22  233455778999999999


Q ss_pred             chhhhhhccCCCCCchhHHHHHHHHHHHHhhhHHHhHHhhhhcchhHHH---HHHHHHHHHHHHHHHHhcccccccccCC
Q 014628           64 LAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYA---FWGEAILMLPFAVLAFVIKPLQLKGFAP  140 (421)
Q Consensus        64 ~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~wr~~---f~~~~~~~~~~~~~~~~~~p~~~~~~~~  140 (421)
                      ...+++.|..|+|+|+++.++.....-+|.+++..+.+.+.+.++-.-.   +...+++.+...++..+- .|.+.....
T Consensus       109 ~~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~s~~rL~~v~~~~a~i~~~l~~ia~wg-~E~r~~~~~  187 (403)
T PF03209_consen  109 SFLALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGRLLDPFSPERLIQVIQGVALIALLLNLIALWG-QEPRRSRRA  187 (403)
T ss_pred             HHHHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHHHHHHHHHHHHHHHHHHh-cccCCcccc
Confidence            9999999999999999999999999999999999999988876653222   222222222222222222 121111000


Q ss_pred             ccccchhhhhhcccccccccCCcccccccchhhhhhhccccchhhhhhhhhhhhhhhHHhhcchhHHHHHHHHHHHHHHH
Q 014628          141 AESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVI  220 (421)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  220 (421)
                      +.++                                           ++...+.+.++++..+|.........++....+
T Consensus       188 ~~~~-------------------------------------------~~~~~f~~a~~~~~~~~~a~~f~~fl~l~t~a~  224 (403)
T PF03209_consen  188 AAAE-------------------------------------------RPRPPFREAWRQVWASPQARRFFVFLFLGTLAF  224 (403)
T ss_pred             cCCC-------------------------------------------CCCccHHHHHHHHHhCCChhHHHHHHHHHHHHH
Confidence            0000                                           000112345666777888887777777777777


Q ss_pred             HHHHHHhhHHHHHhhCCccchh-HHHhhhhHHHHHHhhhhhHHHhh-hccccchhhHHHHHHHHHHHHHH---HHHHhhh
Q 014628          221 GAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQ-MGATISNAFKLLSAATFLGAISC---LTAFCLS  295 (421)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~-~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~  295 (421)
                      +.-...+-.|.-+.++.+..+. .+......+..++....+++..| .+++     +.....+..+..++   .......
T Consensus       225 ~~QD~iLEPygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~-----~~a~~G~~~~~~~f~lii~a~~~~  299 (403)
T PF03209_consen  225 FMQDVILEPYGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKK-----RTAALGCLLGALAFALIILAGPLG  299 (403)
T ss_pred             HhhHHHcCCchhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCch-----HHHHHHHHHHHHHHHHHHHHHhcc
Confidence            7777778888889999996554 66677778888888888888774 3333     33333333333333   2333445


Q ss_pred             hhHHHHHHHHHHHHHHHhccCchhhhhhcccCCchhhHHHHHHHHHHHhhcccCcchhHHHhhhcc
Q 014628          296 SLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHV  361 (421)
Q Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~  361 (421)
                      +.+.+....++.|++.+.......+.+.+...+++.|..+|.-. ..+.++..++..+.|.+.|..
T Consensus       300 ~~~~~~~~~~l~G~g~G~f~vgals~mM~lt~~~~aG~~mG~WG-aaQA~A~Glg~~~GG~~~D~~  364 (403)
T PF03209_consen  300 SPWLFRPGVFLLGLGNGLFTVGALSLMMDLTSAGRAGLFMGAWG-AAQAIARGLGTFLGGALRDLV  364 (403)
T ss_pred             cchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCcchhHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence            67778888888999998888888888999998999999999984 444447777787888887753

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=99.70  E-value=1.6e-16  Score=122.52  Aligned_cols=132  Identities=30%  Similarity=0.386  Sum_probs=120.7

Q ss_pred             ccccchhhHHHHhhhhcCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhhhhhhhccchhhhhhccCCCCCchhH
Q 014628            2 VGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAW   81 (421)
Q Consensus         2 lg~~i~~~~~g~l~Dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~   81 (421)
                      ++..+++++.|++.||+|||+.+..+..+..++.+...+.++++.+.+.+++.|++.+...+....++.|.+|+++|++.
T Consensus         9 ~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (141)
T TIGR00880         9 LGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFALVAGAALIADIYPPEERGVA   88 (141)
T ss_pred             hHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCChhhhhHH
Confidence            45677889999999999999999999999999999998999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhhHHHhHHhhhhcchhHHHHHHHHHHHHHHHHHHHhcccc
Q 014628           82 LSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPL  133 (421)
Q Consensus        82 ~~~~~~~~~~G~~~g~~~~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p~  133 (421)
                      +++.+....+|..++|.+++.+.+..+|++.+++.++..++..+..++..||
T Consensus        89 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (141)
T TIGR00880        89 LGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFILLAFLLPE  140 (141)
T ss_pred             HHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHHHHhhcCCC
Confidence            9999999999999999999999998999999999988877777776666554

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=99.70  E-value=2.2e-15  Score=136.31  Aligned_cols=314  Identities=12%  Similarity=0.108  Sum_probs=209.2

Q ss_pred             ccchhhHHHHhhhhcCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhh--hhhhhccchhhhhhccCCCCCchhH
Q 014628            4 LLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGV--GEASFISLAAPFIDDNAPVPQKTAW   81 (421)
Q Consensus         4 ~~i~~~~~g~l~Dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~--~~~~~~~~~~~~i~~~~~~~~r~~~   81 (421)
                      ..+.++..|.++||+|||..+.+..+...+..++..+.. +|.++    +.|+  +.+.......++++|....++|...
T Consensus        75 ~~i~s~~iG~lSD~~grk~~L~~~~~~~~l~~~~~~~~~-~~~~~----~~~l~g~~~~~~s~~~a~vadis~~~~R~~~  149 (463)
T KOG2816|consen   75 TLISSPLIGALSDRYGRKVVLLLPLFGTILPALCLLFQG-YWFFL----LLGLSGGFSAIFSVGFAYVADISSEEERSSS  149 (463)
T ss_pred             HHHHHhhhHHhhhhhhhhhhHHHHHHHHHHhHHHHHHHH-HHHhh----hcccccchhhhhhhhhhheeeccchhHHHHH
Confidence            456788999999999999999999999888888877766 33333    4444  3345677888999999999999999


Q ss_pred             HHHHHHHHHHHhhhHHHhHHhhhhcchhHHHHHHHHHHHHHHHHHHHhcccccccccCCccccchhhhhhcccccccccC
Q 014628           82 LSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNL  161 (421)
Q Consensus        82 ~~~~~~~~~~G~~~g~~~~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (421)
                      +++.......+..++|.+++.+....|.-.+|.+..+..+...+...+..||+....+.++ ....       +.   ..
T Consensus       150 ~gll~~~~~~~~~~~p~~~~~~~~~~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~~~~~~~-~~~~-------~~---~~  218 (463)
T KOG2816|consen  150 IGLLSGTFGAGLVIGPALGGYLVKFLGIALVFLIAAASGILSLLYMLLFLPESLQEKERSD-ATLR-------EL---TP  218 (463)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhccccccCcccccc-cccc-------cc---CC
Confidence            9999999999999999999999999999999999999998888888888898765432221 0000       00   00


Q ss_pred             CcccccccchhhhhhhccccchhhhhhhhhhhhhhhHHhhcchhHHHHHHHHHHHHHHH-HHHHHHhhHHHHHhhCCccc
Q 014628          162 NDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVI-GAYSYWGPKAGYNIYHMSNA  240 (421)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~  240 (421)
                               .....            ....+..+.....-.+|..+.+.+..+...... ....-..+.|+...+++++.
T Consensus       219 ---------~~~~~------------~~~~~~~~~~~~~~~~r~~l~l~l~~~~~~~~~~~~~~~~~~~yl~~~f~w~~~  277 (463)
T KOG2816|consen  219 ---------GSLDS------------SHVADAFQSLTKVGPDRLLLLLLLVAFLSSLPEAGGASDVLLLYLKAKFGWNKK  277 (463)
T ss_pred             ---------Ccccc------------hhhhhhhhhhcccCCCccchHHHHHHHHHHHHHhcCceeEEEEEEeeecCcCHH
Confidence                     00000            000011111111112344444343333332222 22221346677778888876


Q ss_pred             hhH-HHhhhhHHHHHHhhhhh-HHHhhhccccchhhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhccCch
Q 014628          241 DMM-FGGVTIVCGIVGTISGG-FILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPV  318 (421)
Q Consensus       241 ~~~-~~~~~~~~~~~~~~~~g-~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (421)
                      ... +.+.......++.++.. .+...++.+     +.+..+...-........+..+.|....... .........+..
T Consensus       278 ~~s~~~~~~~~~~~i~~l~~~~~l~~~l~~~-----~~i~lGl~~~~~~~~~~af~~~~w~~~~~~v-~~~~~~~~~pa~  351 (463)
T KOG2816|consen  278 EFSDLLSLVSILGIISQLLLLPLLSSILGEK-----RLISLGLLSEFLQLLLFAFATETWMMFAAGV-VVALAGIVFPAI  351 (463)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-----hHhhHHHHHHHHHHHHHHHhccchhhhHHHH-HHHhhcchhHHH
Confidence            653 44555666666666655 677777777     6555555555555555555555555443333 334445666777


Q ss_pred             hhhhhcccCCchhhHHHHHHHHHHHhhcccCcchhHHHhhhcc
Q 014628          319 NYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHV  361 (421)
Q Consensus       319 ~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~  361 (421)
                      .+.....+.++.+|++.++....... ...++|.+.+.+...+
T Consensus       352 ~s~~s~~v~~~e~g~v~~~is~i~~l-~~~~~~~~~~~i~~~t  393 (463)
T KOG2816|consen  352 RAFASILVSPEEQGKVFGIISGIEGL-SGVVSPALYGNIFALT  393 (463)
T ss_pred             HhHHHhhcccccccchhhHHHHHHHH-hhhhhHHHHHHHHHHH
Confidence            88888889999999999999655555 7788898888886544

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=99.63  E-value=3.8e-13  Score=117.96  Aligned_cols=327  Identities=11%  Similarity=0.005  Sum_probs=216.1

Q ss_pred             ccchhhHHHHhhhhcCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhhhhhhhccchhhhhhccCCCCCchhHHH
Q 014628            4 LLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLS   83 (421)
Q Consensus         4 ~~i~~~~~g~l~Dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~   83 (421)
                      +....++...+.|..+.|++++++.+...+...+..+.++...+-+..+.-|++.+. ..+.++++-...|+++--++.+
T Consensus        54 yl~~l~~vflltd~l~Ykpviil~~~~~i~t~~lll~~~sv~~mq~~q~~yg~~~a~-evay~sYiys~v~~~~yq~vts  132 (412)
T PF01770_consen   54 YLAFLLPVFLLTDYLRYKPVIILQALSYIITWLLLLFGTSVLAMQLMQFFYGLATAA-EVAYYSYIYSVVDKEHYQKVTS  132 (412)
T ss_pred             HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHHH-HHHHHHHheeecCHHHHHHHHH
Confidence            456678889999999999999999999999999999999999999999999999985 6678899999999999999999


Q ss_pred             HHHHHHHHHhhhHHHhHHhhhh--cchhHHHHHHHHHHHHHHHHHHHhcccccccccCCccccchhhhhhcccccccccC
Q 014628           84 MFYMCIPTGVALGYVYGGVVGS--HLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNL  161 (421)
Q Consensus        84 ~~~~~~~~G~~~g~~~~~~l~~--~~~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (421)
                      ...++..+|..++.++|..+..  ..+.+..+++......+..++.+++ |..++..--.++.+....   ..+.+.+..
T Consensus       133 ~~raa~l~g~~~s~~lgQllvs~~~~sy~~L~~isl~~~~~a~~~~~fL-P~~~~S~~f~r~~~~~~~---~~~~~~~~~  208 (412)
T PF01770_consen  133 YTRAATLVGRFISSLLGQLLVSFGGVSYFQLNYISLASVSLALLIALFL-PMPKRSLFFHRKPPAEQD---ANESESDKM  208 (412)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHc-CCCCcccceeccCccccc---ccccccccc
Confidence            9999999999999999998876  3446666666554444444444444 443221100011000000   000000000


Q ss_pred             CcccccccchhhhhhhccccchhhhhhhhhhhhhhhHHhhcchhHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhCCccch
Q 014628          162 NDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNAD  241 (421)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (421)
                      ++..++.    .+.++.+...+.......+..++++++..++|.++...+-+.+...+++.+.+|.....++....+...
T Consensus       209 ~~~~~~~----~~~~~~~~~~~~~~~~~l~~l~~~~~~~y~~~~ll~WSlWWa~atcgy~qv~nYvQ~LW~~v~~~~~~~  284 (412)
T PF01770_consen  209 NESPESS----SSTEKSPSTESSSRKSVLRLLWKDFKSCYSNPRLLLWSLWWAFATCGYYQVINYVQSLWDTVPPSDNES  284 (412)
T ss_pred             ccccccc----cccccCcccccchHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCCCCCc
Confidence            0000000    011111111122223455677788888899999999999888888888888888877776661222111


Q ss_pred             ---hHHHhhhhHHHHHHhhhhhHHHhhhccccchhhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhccCch
Q 014628          242 ---MMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPV  318 (421)
Q Consensus       242 ---~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (421)
                         ...-++..+.+.++.+..|++-.++.+..   ...+....++.+..++++...++.|...+..++.........+..
T Consensus       285 vYNG~VeA~~tllgA~~al~~g~v~~~w~~~~---~l~l~~~S~l~a~~L~lm~~t~~Iwv~Y~~yIif~~~y~fliTiA  361 (412)
T PF01770_consen  285 VYNGAVEAASTLLGAIAALLAGYVKVNWDRWG---ELALGVFSLLQAGLLFLMSFTGNIWVCYAGYIIFRSLYMFLITIA  361 (412)
T ss_pred             ccchHHHHHHHHHHHHHHHHHhHhhcchHHHH---HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence               22335555666777778888744443321   133445555566666677777888888888887777777776666


Q ss_pred             hhhhhcccCCchhhHHHHHHHHHH
Q 014628          319 NYVCLHSVKPSLRALSMAISTVSI  342 (421)
Q Consensus       319 ~~~~~~~~~~~~~~~~~g~~~~~~  342 (421)
                      ..-++.....+.-+...|+++...
T Consensus       362 ~~qIA~~l~~e~yaLVFGiNtf~A  385 (412)
T PF01770_consen  362 SFQIAKNLSEERYALVFGINTFVA  385 (412)
T ss_pred             HHHHHHhccccceeeeeeeHHHHH
Confidence            777777777777888888875433

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=99.57  E-value=1.1e-13  Score=126.26  Aligned_cols=318  Identities=13%  Similarity=0.080  Sum_probs=185.8

Q ss_pred             hhhHHHHhhhhcC-----CchHHHHHHHHHHHHHhhhhhh----hhHHHHHHHHHHhhhhhhhhccchhhhhhccCC--C
Q 014628            7 ASPIFASLAKSHN-----PFRLIGVGLSVWTFATAGCGSS----FDFWSIAICRMLVGVGEASFISLAAPFIDDNAP--V   75 (421)
Q Consensus         7 ~~~~~g~l~Dr~G-----rr~~~~~~~~~~~~~~~~~~~~----~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~--~   75 (421)
                      .-+++|.++|-+.     ||+-++++.++..++.+..+..    .+.....++-++..+|.+.....+-+++.|...  +
T Consensus        40 ~Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p  119 (433)
T PF03092_consen   40 IKPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPASESSAAIAVVLLFLASFGYAFADVAADALVVELARREP  119 (433)
T ss_pred             HhhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCC
Confidence            3578999999873     5555677777776655555543    346666677788889999999999999999874  3


Q ss_pred             CCchhHHHHHHHHHHHHhhhHHHhHHhhhhcchhHHHHHHHHHHHHHHHHHHHhcccccccccCCccccchhhhhhcccc
Q 014628           76 PQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEG  155 (421)
Q Consensus        76 ~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~  155 (421)
                      ++||...+.......+|.+++..++|.+.+..++|..|.+.+++..+..+..+++.+| .+.++..+.....        
T Consensus       120 ~~~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~~~~~f~i~~~~~~l~~~~~~~~~~e-~~~~~~~~~~~~~--------  190 (433)
T PF03092_consen  120 ESRGDLQSFVWGVRSVGSLVGSLLSGPLLDSFGPQGVFLISAALPLLMLIVALFLLEE-RKVRPADEVFSFG--------  190 (433)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCeEEehHHHHHHHHHHHHHHHhhhh-ccccccchhhccc--------
Confidence            4478889999999999999999999999999999999999988877776666666555 1111100000000        


Q ss_pred             cccccCCcccccccchhhhhhhccccchhhhhhhhhhhhhhhHHhhcchhHHHHHH-HHHHHHHHHHHHHHHhhHHHHHh
Q 014628          156 SEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVL-GYIAYNFVIGAYSYWGPKAGYNI  234 (421)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  234 (421)
                                 ++.             ........++.....++.++.|.++...+ ..++............-.+..+.
T Consensus       191 -----------~~~-------------~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~a~~fy~~~~~  246 (433)
T PF03092_consen  191 -----------KEE-------------VPCLFGSFREQLSELWRALQQRAIWQPILFFIFFFNLPPSISSASSFYFQTDA  246 (433)
T ss_pred             -----------ccc-------------cchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCCCCccEEEEEecc
Confidence                       000             00000112333455666667777776555 22222111110000000011112


Q ss_pred             hC---CccchhHHHhhhhHHHHHHhhhhhHHHhhhccccchhhHHHHHHHHHHHHHHHHHH-h---------hhhhHHHH
Q 014628          235 YH---MSNADMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAF-C---------LSSLYGFL  301 (421)
Q Consensus       235 ~~---~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---------~~~~~~~~  301 (421)
                      .+   +++  ..+..+. +.+.++.+++..+-+++.++... ++++..+.++.....+.-. .         .++.+..+
T Consensus       247 ~~gp~fs~--~f~~~~~-~vg~~~~l~g~~~y~~~~~~~~~-R~~~~~t~~~~~~~~l~~~~lv~~~n~~~Gi~d~~f~l  322 (433)
T PF03092_consen  247 LGGPHFSP--SFYGTLS-IVGSIASLLGILLYRKYFSNWSW-RRIFVVTTLVSVLASLFDLLLVTRWNLDLGIPDQWFAL  322 (433)
T ss_pred             ccccccCH--HHHHHHH-HHHHHHHHHHHHHHHHHHhCCCH-HHHHHHHHHHHHHHhcccEEEEEEEeeeeCcCCeEEEE
Confidence            22   232  2222222 33344444555555554443222 1444444443333222111 0         11122233


Q ss_pred             HHHHHHHHHHHhccCchhhhhhcccCCchhhHHHHHHHHHHHhhcccCcchhHHHhhhccc
Q 014628          302 ALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVN  362 (421)
Q Consensus       302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~g  362 (421)
                      .-..+........+.+....+.+..|+..-|+..++.....+. |..++..+...+.+..+
T Consensus       323 gd~~l~~~~~~i~~mP~lvl~a~lcP~G~Egt~yall~s~~Nl-g~~~s~~lg~~l~~~~~  382 (433)
T PF03092_consen  323 GDTILEEVIGMIAFMPSLVLAARLCPKGSEGTVYALLASFSNL-GSSVSSTLGAFLMELFG  382 (433)
T ss_pred             EhHHHHHHHHHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHH-HHHHHHHHHHHHHHHcC
Confidence            3444555566666777888899999999999999999766666 88888877777776655

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=99.53  E-value=4.8e-14  Score=135.10  Aligned_cols=132  Identities=10%  Similarity=-0.015  Sum_probs=115.0

Q ss_pred             ccccchhhHHHHhhhhcCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhhhhhhhccchhhhhhccCCCCCchhH
Q 014628            2 VGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAW   81 (421)
Q Consensus         2 lg~~i~~~~~g~l~Dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~   81 (421)
                      ++.+++.++.|+++||+|||++++++.++.+++.++.+++++...+++.+++.|++.++.++...++++|++|.++|+++
T Consensus       606 l~~i~G~il~g~L~Dr~GRr~~l~~~~~lsai~~ll~~~~~s~~~ll~~~~l~g~~~~~~~~~~~a~~aEl~Pt~~Rgta  685 (742)
T TIGR01299       606 LAVLPGNIVSALLMDKIGRLRMLAGSMVLSCISCFFLSFGNSESAMIALLCLFGGLSIAAWNALDVLTVELYPSDKRATA  685 (742)
T ss_pred             HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHH
Confidence            35577899999999999999999999999999999999999888888899999998888899999999999999999999


Q ss_pred             HHHHHHHHHHHhhhHHHhHHhhhhcchhHHHHHHHHHHHHHHHHHHHhcccccc
Q 014628           82 LSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQL  135 (421)
Q Consensus        82 ~~~~~~~~~~G~~~g~~~~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p~~~  135 (421)
                      +|+......+|.++||.+++.+.+. +...+|++.+++.++.+++.++ +||+.
T Consensus       686 ~Gi~~~~~rlGaiigp~i~g~L~~~-~~~~pf~i~a~~lll~~ll~~~-LPET~  737 (742)
T TIGR01299       686 FGFLNALCKAAAVLGILIFGSFVGI-TKAAPILFASAALACGGLLALK-LPDTR  737 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHh-CCCCc
Confidence            9999999999999999999988764 4567888887777666655554 47743

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>TIGR00889 2A0110 nucleoside transporter

Probab=99.52  E-value=8.6e-14  Score=127.34  Aligned_cols=131  Identities=17%  Similarity=0.253  Sum_probs=113.7

Q ss_pred             ccchhhHHHHhhhhcCCchHHHHHHHHHHHHHhhhhhhh----hHHHHHHHHHHhhhhhhhhccchhhhhhccCCCCCch
Q 014628            4 LLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSF----DFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKT   79 (421)
Q Consensus         4 ~~i~~~~~g~l~Dr~Grr~~~~~~~~~~~~~~~~~~~~~----~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~   79 (421)
                      .+++.++.|+++||+|||+++..+.++.+++..+.....    +++.+++.+++.|++.+...+....++.|++|+++|+
T Consensus       264 ~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~~~~~~~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g  343 (418)
T TIGR00889       264 EIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAYGDPEYFGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRA  343 (418)
T ss_pred             HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH
Confidence            456788999999999999999999999988876666532    3466778999999999988888899999999999999


Q ss_pred             hHHHHHH-HHHHHHhhhHHHhHHhhhhc------chhHHHHHHHHHHHHHHHHHHHhccccc
Q 014628           80 AWLSMFY-MCIPTGVALGYVYGGVVGSH------LNWRYAFWGEAILMLPFAVLAFVIKPLQ  134 (421)
Q Consensus        80 ~~~~~~~-~~~~~G~~~g~~~~~~l~~~------~~wr~~f~~~~~~~~~~~~~~~~~~p~~  134 (421)
                      +++++.+ ...++|.++||.++|.+.++      +||+..|.+.+++.++..++.+++.||+
T Consensus       344 ~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~~~~~  405 (418)
T TIGR00889       344 SAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFAGYIAILAVLFMIFFKYS  405 (418)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence            9999997 67889999999999999887      4699999999998888888888877764

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=99.49  E-value=7.2e-13  Score=118.43  Aligned_cols=336  Identities=13%  Similarity=0.156  Sum_probs=194.7

Q ss_pred             ccccchhhHHHHhhhhcCC-chHHHHHHHHHHHHHhhh-hhh---h-hHHHHHHHHHHhhhhhhhhccchhhhhhccCCC
Q 014628            2 VGLLVASPIFASLAKSHNP-FRLIGVGLSVWTFATAGC-GSS---F-DFWSIAICRMLVGVGEASFISLAAPFIDDNAPV   75 (421)
Q Consensus         2 lg~~i~~~~~g~l~Dr~Gr-r~~~~~~~~~~~~~~~~~-~~~---~-~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~   75 (421)
                      +|.+++++..|+...|.+. |+.++.+.++..++.++. ++.   + ..+.++++|++.|+|.+ ......+|+++....
T Consensus        82 lg~~i~~liF~~Ws~k~~~~k~Pli~s~ii~~~g~llY~~l~~~~~~~~y~mL~~R~l~Gvg~~-n~a~lR~Y~a~~s~~  160 (488)
T KOG2325|consen   82 LGHAIFSLIFGIWSNKTGSVKKPLIVSFLIAIIGNLLYLALAYVPNGVKYLMLVARILTGVGVG-NFAVLRAYIADASTV  160 (488)
T ss_pred             HHHHhcchhhcccccccCCcccCHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHcCcCcc-cHHHHHHHHHhccCc
Confidence            4678899999999999986 778899999999999998 332   3 67889999999999988 456788999999888


Q ss_pred             CCchhHHHHHHHHHHHHhhhHHHhHHhhhhc----------c---hhHHHHHHHHHHHHHHHHHHHhcccccccccCCcc
Q 014628           76 PQKTAWLSMFYMCIPTGVALGYVYGGVVGSH----------L---NWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAE  142 (421)
Q Consensus        76 ~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~----------~---~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~  142 (421)
                      ++|.|+++....+..+|.++||.+...+...          .   -+..+-|+.+++.++..+...+...|..+...+++
T Consensus       161 ~dR~rA~a~~~~~~vlg~ilGp~~q~~f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f~E~~~~~~~~~  240 (488)
T KOG2325|consen  161 EDRPRAFAATSGGFVLGIILGPTIQLAFTPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILFFFKEVYRGIIDKK  240 (488)
T ss_pred             cchHHHHHHhhhHHHHHHHHhHHHHHHHhhhcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHHhheeecccCccccc
Confidence            9999999999999999999999887665521          0   13456677777777777777777766554422111


Q ss_pred             ccchhhhhhcccccccccCCcccccccchhhhhhhccccchhhhhhhhhhhhhhhHHh-hcchhHHHHHHHHHHHHHHHH
Q 014628          143 SGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVL-LQEKVYVVNVLGYIAYNFVIG  221 (421)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  221 (421)
                      ..+..                       +++.+.                  +..+.. +..+..+...+..+...+...
T Consensus       241 ~~~~~-----------------------~~~~~~------------------~~~~~~~~d~~~~~vc~~~~~~~~~~~~  279 (488)
T KOG2325|consen  241 KRSVE-----------------------EEKSDI------------------EKVKKPKLDWVAVLVCIFLRFVVNFIAT  279 (488)
T ss_pred             cccch-----------------------hhccch------------------hhhccCChhHHHHHHHHHHHHHHHHHHH
Confidence            11100                       000000                  000000 112223333444455555555


Q ss_pred             HHHHHhhHHHHHhhCCccchh-HHH-hhhhHHHHHHh-hhhhHHHhhhccccchhhHHHHHHHHHHHHHHHHHHhh---h
Q 014628          222 AYSYWGPKAGYNIYHMSNADM-MFG-GVTIVCGIVGT-ISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCL---S  295 (421)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~-~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~  295 (421)
                      ...+..+.+....++.+.... ... ....+.+++.. +...+..-|.++...+ ..+...+........+.....   .
T Consensus       280 ~iet~~~~~~m~~y~w~~~~av~~~gi~~~~~g~ls~~~~l~~~f~~l~~i~~r-~~~~~g~l~~f~~~~i~~yp~~~~s  358 (488)
T KOG2325|consen  280 TIETLSSALTMVMYGWTGSEAVLYNGITLSISGILSVILLLLYIFTRLGKIDKR-RIILLGFLIFFLSYYIFTYPWGFYS  358 (488)
T ss_pred             HHHhccchHHHHHhccccchHHHhhhhHHHHHHHHHHHHHHHHHHHHhhhhccc-eeeeehHHHHHHhhheeeeeccccc
Confidence            555666666666677664333 222 22233332222 2333333343331100 022222222222222111100   0


Q ss_pred             ---------------------------hhHHHHHH-HHHHHHHHHhccCchhhhhhcccCCchhhHHHHHHHHHHHhhcc
Q 014628          296 ---------------------------SLYGFLAL-FTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGD  347 (421)
Q Consensus       296 ---------------------------~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~  347 (421)
                                                 +.+.++.. ..+.+...-.......++.++...|++++++.+++. ..+..+.
T Consensus       359 ~pv~~~~~~~~~~~~~~y~wc~~~~~v~~~~~l~~~i~~~g~~~P~~~~~~~tlySkiLgp~~q~~~qg~~~-~~~s~~~  437 (488)
T KOG2325|consen  359 GPVQPYNTTYAGCDFEEYSWCDTTTAVPLILYLISFIVVFGIAFPFISTALDTLYSKILGPRDQGTMQGVFS-ISGSIAR  437 (488)
T ss_pred             cccccccccccCcCcccchhhccCcccChhhheeehhheeccccccccchHHHHHHHHhCCccccceeEEEE-eccchhh
Confidence                                       01111111 112222222334457788889999999999999995 4444588


Q ss_pred             cCcchhHHHhhhccccchhhhHHHHHHHHHHHHHH
Q 014628          348 VPSSPLVGVLQDHVNNWRKTTLALTSIFFLAAGIW  382 (421)
Q Consensus       348 ~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~  382 (421)
                      .++|.+........| +++.+.......++....+
T Consensus       438 ~~~~~~~t~~~~~~g-~~~v~~~~~~~~l~~~~l~  471 (488)
T KOG2325|consen  438 VVGPIFSTAIFTLSG-PRPVWIILLCLLLVVAALW  471 (488)
T ss_pred             hhhHHHHhhhHHhcC-ccHHHHHHHHHHHHHHHHH
Confidence            889888887777766 5555555555444444333

>PRK10054 putative transporter; Provisional

Probab=99.49  E-value=2.4e-12  Score=117.10  Aligned_cols=168  Identities=10%  Similarity=0.009  Sum_probs=125.1

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhCCccchhH-HHhhhhHHHHHHhhhhhHHHhhhccccchhhHHHHHHHH
Q 014628          204 KVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADMM-FGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATF  282 (421)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~  282 (421)
                      +.++.+.+..++.....+....++|.|+++.++.+..+.. ..+...+..+++.+..|+++||+|||     +.+..+.+
T Consensus         7 ~~~~~l~~~~~~~~~g~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k-----~~~~~~~~   81 (395)
T PRK10054          7 RSTSALLASSLLLTIGRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKK-----RYMLLAIT   81 (395)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcc-----hhHHHHHH
Confidence            4456666677778888888888999999988888876553 34566778888999999999999998     66666666


Q ss_pred             HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhccCchhhhhhcccCCchhhHHHHHHHHHHHhhcccCcchhHHHhhhccc
Q 014628          283 LGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVN  362 (421)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~g  362 (421)
                      ...+..+.....++.+..++...+.+...+...+....+..|..|+++|+++.|+.+...+. |..++|.+.+++.+ . 
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l-g~~igp~l~~~l~~-~-  158 (395)
T PRK10054         82 AFASGFIAIPLVNNVTLVVLFFALINCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNI-GWTVGPPLGTLLVM-Q-  158 (395)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH-h-
Confidence            66565555555666655555555555555555666778888999999999999999777766 99999999998876 3 


Q ss_pred             cchhhhHHHHHHHHHHH
Q 014628          363 NWRKTTLALTSIFFLAA  379 (421)
Q Consensus       363 ~~~~~~~~~~~~~~~~~  379 (421)
                      +++..+...+.+.++..
T Consensus       159 g~~~~f~~~~~~~~i~~  175 (395)
T PRK10054        159 SINLPFWLAAICSAFPL  175 (395)
T ss_pred             ccCcHHHHHHHHHHHHH
Confidence            47777776665554443

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.47  E-value=5.7e-13  Score=124.83  Aligned_cols=136  Identities=10%  Similarity=0.003  Sum_probs=101.2

Q ss_pred             ccccchhhHHHHhhhhcCCchHHHHHHHHHHHHHhh---hhhhhhHHHHHHHHHHhhhhhhhhccchhhhhhccCCCCCc
Q 014628            2 VGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAG---CGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQK   78 (421)
Q Consensus         2 lg~~i~~~~~g~l~Dr~Grr~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r   78 (421)
                      ++..++.++.|+++||+|||+++..+.++..++.+.   ...+++...+++++++.|++.+........++.|.+|++.|
T Consensus       297 ~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~p~~~R  376 (490)
T PRK10642        297 IGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFILINSNVIGLIFAGLLMLAVILNCFTGVMASTLPAMFPTHIR  376 (490)
T ss_pred             HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCccc
Confidence            356678889999999999999988887654433332   22345677788899999988777777778889999999999


Q ss_pred             hhHHHHHHHHHHHHhhhHHHhHHhhhhcc-hhHHHHHHHHHHHHHHHHHHHhccccccccc
Q 014628           79 TAWLSMFYMCIPTGVALGYVYGGVVGSHL-NWRYAFWGEAILMLPFAVLAFVIKPLQLKGF  138 (421)
Q Consensus        79 ~~~~~~~~~~~~~G~~~g~~~~~~l~~~~-~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~  138 (421)
                      +++++.......++..++|.+.+++.+.. +|+.+++...+++++..+..+ +.||++++.
T Consensus       377 g~~~g~~~~~~~~~g~~~p~i~g~l~~~~~~~~~~~~~~~~~~~i~~~~~~-~~pes~~~~  436 (490)
T PRK10642        377 YSALAAAFNISVLVAGLTPTLAAWLVESTQNLMMPAYYLMVVAVIGLITGV-TMKETANRP  436 (490)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHH-HhccccCCC
Confidence            99999755445566678898888887654 478777777666665555544 448887654

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.46  E-value=4.9e-13  Score=122.34  Aligned_cols=129  Identities=17%  Similarity=0.168  Sum_probs=114.7

Q ss_pred             cccchhhHHHHhhhhcCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhhhhhhhccchhhhhhccCCCCCchhHH
Q 014628            3 GLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWL   82 (421)
Q Consensus         3 g~~i~~~~~g~l~Dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~   82 (421)
                      +..++.++.|++.||+|+|+.+..+..+..++.++..+.++.+.+++.+++.|++.+...+.....+.|.+|+++|++++
T Consensus       261 ~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~g~~~  340 (399)
T PRK05122        261 AFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLWLAPSPWMALIGAALTGFGFSLVFPALGVEAVKRVPPQNRGAAL  340 (399)
T ss_pred             HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence            45678899999999999999999999888888888888888888889999999999988888888888999999999999


Q ss_pred             HHHHHHHHHHhhhHHHhHHhhhhcchhHHHHHHHHHHHHHHHHHHHhcc
Q 014628           83 SMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIK  131 (421)
Q Consensus        83 ~~~~~~~~~G~~~g~~~~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~  131 (421)
                      ++++....+|..+++.+.+.+.+..||++.|++.+++.++..++.++..
T Consensus       341 g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~  389 (399)
T PRK05122        341 GAYSVFLDLSLGITGPLAGLVASWFGYPSIFLAAALAALLGLALTWLLY  389 (399)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhc
Confidence            9999999999999999999999999999999999888777666655543

>PRK11663 regulatory protein UhpC; Provisional

Probab=99.45  E-value=6.8e-12  Score=115.82  Aligned_cols=167  Identities=16%  Similarity=0.188  Sum_probs=124.4

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhCCccchh-HHHhhhhHHHHHHhhhhhHHHhhhccccchhhHHHHHHHH
Q 014628          204 KVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATF  282 (421)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~  282 (421)
                      +.+....+.+++.......+..+.|.+.++ ++.+..+. ...+...++..++.++.|++.||+|+|     +.+..+.+
T Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r-----~~~~~~~~   96 (434)
T PRK11663         23 HILITMYLGYALFYFTRKSFNAAMPEMLAD-LGLSRSDIGLLATLFYITYGVSKFVSGIVSDRSNAR-----YFMGIGLI   96 (434)
T ss_pred             HHHHHHHHHHHHHHHhhhhHHHhhHHHHHh-cCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhcCCc-----hhHHHHHH
Confidence            333444444555555555667778887766 66775554 445677788899999999999999998     77777777


Q ss_pred             HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhccCchhhhhhcccCCchhhHHHHHHHHHHHhhcccCcchhHHHhhhccc
Q 014628          283 LGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVN  362 (421)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~g  362 (421)
                      +..+..+.....++.+...+..++.+++.+...+....++.+.+|+++|++++++.+...+. |..++|.+.+++.+..|
T Consensus        97 ~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~-g~~~~~~~~~~l~~~~g  175 (434)
T PRK11663         97 ATGIINILFGFSSSLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNV-GGALIPLVVGAIALHYG  175 (434)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHccc
Confidence            77766666666667766666666677777777788888999999999999999999766665 88999999999998766


Q ss_pred             cchhhhHHHHHHHHHH
Q 014628          363 NWRKTTLALTSIFFLA  378 (421)
Q Consensus       363 ~~~~~~~~~~~~~~~~  378 (421)
                       |+..+.+.++..++.
T Consensus       176 -w~~~f~~~~i~~~~~  190 (434)
T PRK11663        176 -WRYGMMIAGIIAIVV  190 (434)
T ss_pred             -HHHHHHHHHHHHHHH
Confidence             877777766554433

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.42  E-value=3.1e-12  Score=115.55  Aligned_cols=162  Identities=7%  Similarity=-0.040  Sum_probs=117.6

Q ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHhhCCccchhHHHhhhhHHHHHHhhhhhHHHhhhccccchhhHHHHHHHHHHHHHHH
Q 014628          210 VLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCL  289 (421)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~  289 (421)
                      ....++...........+|.|..+....+.......+...++..++.++.|+++||+|||     +.+..+..+......
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r-----~~~~~~~~~~~~~~~   79 (365)
T TIGR00900         5 FAAQLISLIGTAITQVALPLYVLAGTGSASVLSLAALAGMLPYVVLSPIAGALADRYDRK-----KVMIGADLIRAVLVA   79 (365)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchh-----HHHHHHHHHHHHHHH
Confidence            344455555566666777888777443333333445677788899999999999999998     777666655555444


Q ss_pred             HHHhhh-----hhHHHHHHHHHHHHHHHhccCchhhhhhcccCCchhhHHHHHHHHHHHhhcccCcchhHHHhhhccccc
Q 014628          290 TAFCLS-----SLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNW  364 (421)
Q Consensus       290 ~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~g~~  364 (421)
                      ......     +.+...+...+.+++.+...+....++.|..|+++|++++++.+..... |..++|.+.+.+.+..+ |
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~g~~l~~~l~~~~g-~  157 (365)
T TIGR00900        80 VLPFVALLGGLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSL-FYIVGPGIGGLMYATLG-I  157 (365)
T ss_pred             HHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHH-HHHHHHHHHHHHHHHhh-H
Confidence            444444     6666777777788888888888899999999999999999999766655 88999999999988765 7


Q ss_pred             hhhhHHHHHHHHHH
Q 014628          365 RKTTLALTSIFFLA  378 (421)
Q Consensus       365 ~~~~~~~~~~~~~~  378 (421)
                      +..+++.+...++.
T Consensus       158 ~~~~~~~~~~~~~~  171 (365)
T TIGR00900       158 KWAIWVDAVGFAIS  171 (365)
T ss_pred             HHHHHHHHHHHHHH
Confidence            67776655544433

>PRK12382 putative transporter; Provisional

Probab=99.41  E-value=1.1e-12  Score=119.70  Aligned_cols=128  Identities=12%  Similarity=0.109  Sum_probs=115.2

Q ss_pred             cccchhhHHHHhhhhcCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhhhhhhhccchhhhhhccCCCCCchhHH
Q 014628            3 GLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWL   82 (421)
Q Consensus         3 g~~i~~~~~g~l~Dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~   82 (421)
                      +..+++++.|++.||+|+|+.+..+..+..++.++..+.++.+.+++..++.|++.+...+...+.+.|.+|+++|++++
T Consensus       261 ~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~  340 (392)
T PRK12382        261 AFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLWLAPTAWVALAGAALTGAGCSLIFPALGVEVVKRVPSQVRGTAL  340 (392)
T ss_pred             HHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCHHHHHHHH
Confidence            34678899999999999999999999999888888888888888888999999999988888888899999999999999


Q ss_pred             HHHHHHHHHHhhhHHHhHHhhhhcchhHHHHHHHHHHHHHHHHHHHhc
Q 014628           83 SMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVI  130 (421)
Q Consensus        83 ~~~~~~~~~G~~~g~~~~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~  130 (421)
                      ++++....+|..++|.+.+.+.++.||++.|.+.+++.++..++.++.
T Consensus       341 g~~~~~~~~g~~ig~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~  388 (392)
T PRK12382        341 GGYAAFQDIAYGVSGPLAGMLATSFGYPSVFLAGAISAVLGIIVTILS  388 (392)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHhh
Confidence            999999999999999999999999999999999998877766665544

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.41  E-value=1.1e-12  Score=120.49  Aligned_cols=128  Identities=16%  Similarity=0.176  Sum_probs=114.9

Q ss_pred             ccchhhHHHHhhhhcCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhhhhhhhccchhhhhhccCCCCCchhHHH
Q 014628            4 LLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLS   83 (421)
Q Consensus         4 ~~i~~~~~g~l~Dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~   83 (421)
                      ..++.+..|++.||+|||+.+..+..+..++.+...+.++.+.+++.+++.|++.+...+...+++.+..|+++|++.++
T Consensus       271 ~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~  350 (408)
T PRK09874        271 ALLSAPRLGKLGDRIGPEKILITALIFSVLLLIPMSFVQTPLQLGILRFLLGAADGALLPAVQTLLVYNSSNQIAGRIFS  350 (408)
T ss_pred             HHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhHhhHHHHHHHHHHhCCcccceeeeh
Confidence            34667788999999999999999998888888888888888889999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhHHHhHHhhhhcchhHHHHHHHHHHHHHHHHHHHhcc
Q 014628           84 MFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIK  131 (421)
Q Consensus        84 ~~~~~~~~G~~~g~~~~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~  131 (421)
                      +++....+|..+||.+++.+.+..||++.|++.+++.++..+..++..
T Consensus       351 ~~~~~~~~g~~~gp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~  398 (408)
T PRK09874        351 YNQSFRDIGNVTGPLMGAAISANYGFRAVFLVTAGVVLFNAVYSWNSL  398 (408)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999988887777666544

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.41  E-value=6.8e-13  Score=122.12  Aligned_cols=129  Identities=9%  Similarity=0.055  Sum_probs=113.4

Q ss_pred             cccchhhHHHHhhhhcCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhhhhhhhccchhhhhhccCCCCCchhHH
Q 014628            3 GLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWL   82 (421)
Q Consensus         3 g~~i~~~~~g~l~Dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~   82 (421)
                      +.+++.+++|++.||+|+|+.+..+.++.+++.++.+++++.+.+++.+++.|++.+...+....++.|.+|++.|+...
T Consensus       274 ~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~a~~~  353 (420)
T PRK09528        274 LEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFATGPLEVSILKLLHAFEVPFLLVGVFKYITLNFDVRLSATIY  353 (420)
T ss_pred             HHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccceeeee
Confidence            34578899999999999999999999999999899999999999999999999999888888889999999999998876


Q ss_pred             HH-HHHHHHHHhhhHHHhHHhhhhcchhHHHHHHHHHHHHHHHHHHHhcc
Q 014628           83 SM-FYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIK  131 (421)
Q Consensus        83 ~~-~~~~~~~G~~~g~~~~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~  131 (421)
                      +. ++....+|.+++|.+.|++.+..|||..|.+.+++.++..++.++..
T Consensus       354 ~~~~~~~~~lg~~ig~~~~G~l~~~~G~~~~f~~~~~~~~i~~~~~~~~~  403 (420)
T PRK09528        354 LVGFQFAKQLGAVFLSTLAGNLYDSIGFQGTYLILGGIVLLFTLISVFTL  403 (420)
T ss_pred             eehHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHh
Confidence            65 67778899999999999999999999999999888776666655544

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=99.40  E-value=6.2e-12  Score=108.73  Aligned_cols=174  Identities=17%  Similarity=0.183  Sum_probs=144.0

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhCCccchh-HHHhhhhHHHHHHhhhhhHHHhhhccccchhhHHHHHH
Q 014628          202 QEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAA  280 (421)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~  280 (421)
                      |.+.+..+.+.+..+++.--.+..-.|...++ ++.+..+. .+.+...+..-++-++.|.++||.+.|     ..+..+
T Consensus        27 r~qif~~~fiGYa~fYl~RknF~~a~p~l~e~-~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr-----~fm~~g  100 (448)
T COG2271          27 RIQIFLSIFIGYAAFYLTRKNFNLAMPALIED-GGLSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPR-----YFMAFG  100 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHhhccHHHHHh-cCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCc-----eeehHH
Confidence            44556666677777777777777777766655 55776565 445788899999999999999999998     888888


Q ss_pred             HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhccCchhhhhhcccCCchhhHHHHHHHHHHHhhcccCcchhH--HHhh
Q 014628          281 TFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLV--GVLQ  358 (421)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~--g~l~  358 (421)
                      .+++++..+++.+.++.+.+.++..+.+.+.+..+|+....+.+-+++++||+..++-|+.-+. |+.+.|++.  +++.
T Consensus       101 Lilsai~nil~Gfs~s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shNi-GGal~~~~~~la~~~  179 (448)
T COG2271         101 LILSAIVNILFGFSPSLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSHNI-GGALAPLVALLAFFA  179 (448)
T ss_pred             HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccccCceEEEehhhhhc-ccchHHHHHHHHHHH
Confidence            8888888888888889999999999999999999999999999999999999999999988888 777788888  8888


Q ss_pred             hccccchhhhHHHHHHHHHHHHHHH
Q 014628          359 DHVNNWRKTTLALTSIFFLAAGIWF  383 (421)
Q Consensus       359 ~~~g~~~~~~~~~~~~~~~~~~~~~  383 (421)
                      ++. +|+..|++-+++.++..++.+
T Consensus       180 ~~~-~w~~~f~~pgiiaiival~~~  203 (448)
T COG2271         180 FHG-GWRAAFYFPGIIAIIVALILL  203 (448)
T ss_pred             hcc-chhHHHHHHHHHHHHHHHHHH
Confidence            775 588999988887766665544

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=99.40  E-value=4.3e-11  Score=102.32  Aligned_cols=215  Identities=12%  Similarity=0.095  Sum_probs=135.4

Q ss_pred             cccchhhHHHHhhhhcCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhhhhhhhccchhhh-hhccCCC----CC
Q 014628            3 GLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPF-IDDNAPV----PQ   77 (421)
Q Consensus         3 g~~i~~~~~g~l~Dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~-i~~~~~~----~~   77 (421)
                      ..++..++.|.++||+|||+.-+.-+++.+++++ +-..++++.++++|++.|++.+..+.+-.++ +.|+-..    +.
T Consensus        81 Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl-~k~~~~~~~L~~GRvlgGiaTSLLfS~FEsW~V~Eh~~~g~~~~~  159 (354)
T PF05631_consen   81 SSAIFGTFVGSLADRYGRKKACLLFCILYSLSCL-TKHSSNYPVLLLGRVLGGIATSLLFSAFESWMVHEHNKRGFPQEW  159 (354)
T ss_pred             HHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHH-HHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHH
Confidence            4567788999999999999999999999998886 4566899999999999999999999888775 4565322    22


Q ss_pred             chhHHHHHH-HHHHHHhhhHHHhHHhhhhcchh--HHHHHHHHHHHHHHHHHHHhcccccccccCCccccchhhhhhccc
Q 014628           78 KTAWLSMFY-MCIPTGVALGYVYGGVVGSHLNW--RYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSE  154 (421)
Q Consensus        78 r~~~~~~~~-~~~~~G~~~g~~~~~~l~~~~~w--r~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~  154 (421)
                      .+..++... ...++-.+.+.+++..+.+..+.  ..+|....++.++..++.....+|...+   +++.+         
T Consensus       160 L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~vaPF~~a~~~l~~~~~~I~~~W~ENyg~---~~~~~---------  227 (354)
T PF05631_consen  160 LSDTFSLATFFGNGVVAIGAGVVANVLADWFGFGPVAPFDAAIVLLAVAAVLILKTWPENYGD---TSSSS---------  227 (354)
T ss_pred             HHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHHhcccccCCC---ccccc---------
Confidence            233333333 22333445556666666665544  7888888777666666555444443211   11110         


Q ss_pred             ccccccCCcccccccchhhhhhhccccchhhhhhhhhhhhhhhHHhhcchhHHHHHHHHHHHHHHHHHHH-HHhhHHHHH
Q 014628          155 GSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYS-YWGPKAGYN  233 (421)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~  233 (421)
                                                       +..++..+..+.+.++|+++.+.+...++-...+.+. .|.|..-.+
T Consensus       228 ---------------------------------~~~~~~~~a~~~i~~d~ril~LG~~qslFE~smy~FVflWtPaL~~~  274 (354)
T PF05631_consen  228 ---------------------------------SLSGSFREAWRAILSDPRILLLGLIQSLFEGSMYLFVFLWTPALDPD  274 (354)
T ss_pred             ---------------------------------chHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHheeeeeceecCC
Confidence                                             0111223446677788999988888777766665555 567765411


Q ss_pred             hhCCccchhHHHhhhhHHHHHHhhhhhHHHhh
Q 014628          234 IYHMSNADMMFGGVTIVCGIVGTISGGFILDQ  265 (421)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~  265 (421)
                       ...-+... +.+...++.++|+.+..++..+
T Consensus       275 -~~~~P~Gl-IFssFM~a~MlGS~lf~~l~s~  304 (354)
T PF05631_consen  275 -DEELPLGL-IFSSFMVAMMLGSSLFSRLLSK  304 (354)
T ss_pred             -CCCCCchH-HHHHHHHHHHHHHHHHHHHHhC
Confidence             11112222 2244456667777666554443

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=99.39  E-value=1.1e-11  Score=115.30  Aligned_cols=170  Identities=11%  Similarity=-0.059  Sum_probs=128.3

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhHHHHHh--hCCccchh-HHHhhhhHHHHHHhhhhhHHHhh-hccccchhhHHHHH
Q 014628          204 KVYVVNVLGYIAYNFVIGAYSYWGPKAGYNI--YHMSNADM-MFGGVTIVCGIVGTISGGFILDQ-MGATISNAFKLLSA  279 (421)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~-~~~~~~~~~~~~~~  279 (421)
                      +.++.+.+..++..+.+++...++|.|+.+.  .+.+..+. .......+...++.+++|+++|| +|||     +.+..
T Consensus        10 ~~~~~l~~~~~~~~~~~~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~-----~~l~~   84 (475)
T TIGR00924        10 KPLFTLFFVELWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTK-----KTMVL   84 (475)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchH-----HHHHH
Confidence            4455556666777888999999999999887  67775554 44466778889999999999999 7998     77777


Q ss_pred             HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhccCchhhhhhcccCCc---hhhHHHHHHHHHHHhhcccCcchhHHH
Q 014628          280 ATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPS---LRALSMAISTVSIHIFGDVPSSPLVGV  356 (421)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~g~~~~~~~~~g~~~~~~~~g~  356 (421)
                      +..+..+..++....++.+...+...+.+.+.+...+.......+.+|++   .|+++.++.+...+. |..+||.+.++
T Consensus        85 ~~~~~~~g~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~ni-G~~ig~~l~g~  163 (475)
T TIGR00924        85 GGIVLMLGHFMLAMSIYPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINI-GSFISPLLAGV  163 (475)
T ss_pred             HHHHHHHHHHHHHhcccHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHH-HHHHHHHHHHH
Confidence            77777666666655555555555556667777777778888888888775   488899998777777 99999999999


Q ss_pred             hhhccccchhhhHHHHHHHHHHHH
Q 014628          357 LQDHVNNWRKTTLALTSIFFLAAG  380 (421)
Q Consensus       357 l~~~~g~~~~~~~~~~~~~~~~~~  380 (421)
                      +.+..+ |+..|...+...+++.+
T Consensus       164 l~~~~g-~~~~f~~~~~~~~~~~l  186 (475)
T TIGR00924       164 IAENYG-YHVGFNLAAVGMVIGLL  186 (475)
T ss_pred             HHHhcC-hHHHHHHHHHHHHHHHH
Confidence            998766 77788776655444433

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=99.39  E-value=1.9e-11  Score=111.96  Aligned_cols=174  Identities=13%  Similarity=0.011  Sum_probs=121.6

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhCCccchh-HHHhhhhHHHHHHhhhhhHHHhhh-ccccchhhHHHHHH
Q 014628          203 EKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQM-GATISNAFKLLSAA  280 (421)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~-~~~~~~~~~~~~~~  280 (421)
                      .+.++......+...+.++++..++|.|+.+..+.++... ...........++.+++|+++||+ |||     +.+..+
T Consensus         8 p~~l~~l~~~~~~e~fs~Yg~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrr-----r~iliG   82 (493)
T PRK15462          8 PRAIYYVVALQIWEYFSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNR-----MAVMLG   82 (493)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcH-----HHHHHH
Confidence            3445555666677788899999999999998888886555 344556677788899999999999 998     666666


Q ss_pred             HHHHHHHHHHHHhhh-hhHHHHHHHHHHHHHHHhccCchhhhhhcccCCc--hhhHHHHHHHHHHHhhcccCcchhHHHh
Q 014628          281 TFLGAISCLTAFCLS-SLYGFLALFTVGELLVFATQAPVNYVCLHSVKPS--LRALSMAISTVSIHIFGDVPSSPLVGVL  357 (421)
Q Consensus       281 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~g~~~~~~~~~g~~~~~~~~g~l  357 (421)
                      .++..+..+++...+ +.....+...+...+.+...+...+++.|.+|++  .|.++.++.+...+. |+.++|.+.+++
T Consensus        83 ~il~~lg~lll~~~~~~~~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nl-G~~iap~l~g~L  161 (493)
T PRK15462         83 ALLMAIGHVVLGASEIHPSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNV-GSIIAPIACGYA  161 (493)
T ss_pred             HHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcccccccHHHHHHHHCCCCCccccceehHHHHHHHH-HHHHHHHHHHHH
Confidence            665555544333222 1122222333333444555566678889999875  799999999888886 999999999999


Q ss_pred             hhccccchhhhHHHHHHHHHHHHHHH
Q 014628          358 QDHVNNWRKTTLALTSIFFLAAGIWF  383 (421)
Q Consensus       358 ~~~~g~~~~~~~~~~~~~~~~~~~~~  383 (421)
                      .+..| |+..|...++..+++.+.++
T Consensus       162 ~~~~G-w~~~F~iaaigm~l~li~~~  186 (493)
T PRK15462        162 QEEYS-WAMGFGLAAVGMIAGLVIFL  186 (493)
T ss_pred             HhhhC-hHHHHHHHHHHHHHHHHHHH
Confidence            88766 77888776655544444433

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=99.39  E-value=8.6e-12  Score=112.10  Aligned_cols=163  Identities=16%  Similarity=0.139  Sum_probs=122.0

Q ss_pred             HHHHHHHHHHHHHHHhhHHHHHhhCCccchh-HHHhhhhHHHHHHhhhhhHHHhhhccccchhhHHHHHHHHHHHHHHHH
Q 014628          212 GYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLT  290 (421)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (421)
                      ..++............|.++.+.++.+..+. ...+...++..++.++.|+++||+|||     +.+..+.++..+..+.
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r-----~~l~~~~~~~~~~~~~   78 (352)
T PF07690_consen    4 AFFLSGFGFSIISPALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRR-----RVLIIGLLLFALGSLL   78 (352)
T ss_dssp             HHHHHHHHHHHHHHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HH-----HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCe-----eeEeehhhhhhhHHHH
Confidence            3445555566666677756666677665555 445677788999999999999999998     7776666666666444


Q ss_pred             HHhhhhhHHHHHHHHHHHHHHHhccCchhhhhhcccCCchhhHHHHHHHHHHHhhcccCcchhHHHhhhccccchhhhHH
Q 014628          291 AFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLA  370 (421)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~  370 (421)
                      ..+.++.+..++..++.+++.+...+....++.+.+|+++|++++++.+..... |..++|.+.+.+.+..+ |+..+++
T Consensus        79 ~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-g~~~g~~l~~~l~~~~~-~~~~~~~  156 (352)
T PF07690_consen   79 LAFASNFWLLLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSL-GSILGPLLGGFLISYFG-WRWAFLI  156 (352)
T ss_dssp             HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHH-HHHHHHHHHHHCCCHCH-HCCHHHH
T ss_pred             hhhhhhHHHHhhhccccccccccccccccccccccchhhhhhhccccccchhhh-hhhcccchhhhhhhccc-ccccccc
Confidence            433355557777788888888888899999999999999999999999766665 99999999999997655 7778887


Q ss_pred             HHHHHHHHHHH
Q 014628          371 LTSIFFLAAGI  381 (421)
Q Consensus       371 ~~~~~~~~~~~  381 (421)
                      .+...++..++
T Consensus       157 ~~~~~~~~~il  167 (352)
T PF07690_consen  157 SAILSLIAAIL  167 (352)
T ss_dssp             HHHHHHHHHHH
T ss_pred             ccchhhhhhhh
Confidence            77776666553

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.39  E-value=1e-11  Score=114.29  Aligned_cols=175  Identities=15%  Similarity=0.064  Sum_probs=120.6

Q ss_pred             hhhHHhhcchhHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhCCccchh-HHHhhhhHHHHHHhhhhhHHHhhhccccchh
Q 014628          195 QDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNA  273 (421)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~  273 (421)
                      .+++.+.++|.++...+..++............|.+.++..+ ++.+. .......++..++.++.|+++||++||    
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~g~~----   82 (417)
T PRK10489          8 LDLSLLKTHPAFRAVFIARFISIFGLGLLGVAVPVQIQMMTG-STLQVGLSVTLTGGAMFIGLMVGGVLADRYDRK----   82 (417)
T ss_pred             HHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCc----
Confidence            345556678888887777777777777777888888877554 43333 445677788899999999999999998    


Q ss_pred             hHHHHHHHHHHHHHHHHH-----HhhhhhHHHHHHHHHHHHHHHhccCchhhhhhcccCCchhhHHHHHHHHHHHhhccc
Q 014628          274 FKLLSAATFLGAISCLTA-----FCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDV  348 (421)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~  348 (421)
                       +.+..+..+........     ...++.+...+..++.+++.+...+.....+.+.+|+++|+++.++.+...+. |..
T Consensus        83 -~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~  160 (417)
T PRK10489         83 -KLILLARGTCGLGFIGLALNAFLPEPSLLAIYLLGLWDGFFGSLGVTALLAATPALVGRENLMQAGAITMLTVRL-GSV  160 (417)
T ss_pred             -eEEEehHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhH-HHH
Confidence             44443333333222211     11234445555555666666666677788888999999999999998655555 889


Q ss_pred             CcchhHHHhhhccccchhhhHHHHHHHHH
Q 014628          349 PSSPLVGVLQDHVNNWRKTTLALTSIFFL  377 (421)
Q Consensus       349 ~~~~~~g~l~~~~g~~~~~~~~~~~~~~~  377 (421)
                      +||.+.+.+.+..+ +++.+++.+...++
T Consensus       161 ~g~~l~g~l~~~~~-~~~~~~~~~~~~~~  188 (417)
T PRK10489        161 ISPALGGLLIAAGG-VAWNYGLAAAGTFI  188 (417)
T ss_pred             hHHHHHHHHHHHHh-hHHHHHHHHHHHHH
Confidence            99999999988755 66666655544433

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=99.36  E-value=3.3e-11  Score=109.87  Aligned_cols=164  Identities=13%  Similarity=0.052  Sum_probs=123.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHHHHhhCCccchhHH-HhhhhHHHHHHhhhhhHHHhhhccccchhhHHHHHHHHHHH
Q 014628          207 VVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADMMF-GGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGA  285 (421)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~  285 (421)
                      +.+....++.....+....++|.++++..+.+.....+ .....+...+..++.|+++||++||     +.+..+.....
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k-----~~l~~~~~~~~   87 (400)
T PRK11646         13 YFLLIDNMLVVLGFFVVFPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAK-----PMIVTGMLMRA   87 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCch-----HHHHHHHHHHH
Confidence            33445566777777788888898988888888655533 3555667777789999999999998     77777777777


Q ss_pred             HHHHHHHhhhhhHHHHHHHHHHHHHHHhccCchhhhhhcccCCchhhHHHHHHHHHHHhhcccCcchhHHHhhhccccch
Q 014628          286 ISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWR  365 (421)
Q Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~g~~~  365 (421)
                      ..++.....++.+...+...+.+++.+...+...+.+.+..|+++|+++.|+.+...+. |..+||.+.+++.+ .+ ++
T Consensus        88 ~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-g~~ig~~l~g~l~~-~g-~~  164 (400)
T PRK11646         88 AGFATMAIAHEPWLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSA-GAVIGALLGSWLLQ-YD-FR  164 (400)
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH-hh-HH
Confidence            77666666667766666667777777666777788889999999999999999766666 99999999999984 34 76


Q ss_pred             hhhHHHHHHHHHH
Q 014628          366 KTTLALTSIFFLA  378 (421)
Q Consensus       366 ~~~~~~~~~~~~~  378 (421)
                      ..+++.+...++.
T Consensus       165 ~~f~~~~~~~~~~  177 (400)
T PRK11646        165 LVCATGAVLFVLA  177 (400)
T ss_pred             HHHHHHHHHHHHH
Confidence            7777665554443

>TIGR00891 2A0112 putative sialic acid transporter

Probab=99.34  E-value=3.6e-11  Score=110.33  Aligned_cols=162  Identities=11%  Similarity=0.101  Sum_probs=118.7

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhCCccchh-HHHhhhhHHHHHHhhhhhHHHhhhccccchhhHHHHHHHH
Q 014628          204 KVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATF  282 (421)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~  282 (421)
                      +.+....+..+.............|.+. +.++.+..+. ...+...++..++.++.|+++||+|||     +.+..+.+
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r-----~~~~~~~~   85 (405)
T TIGR00891        12 NAFSAAWLGWLLDAFDFFLVALVLAEVA-GEFGLTTVDAASLISAALISRWFGALMFGLWGDRYGRR-----LPMVTSIV   85 (405)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccH-----HHHHHHHH
Confidence            3344445555555555566666666654 4567775554 445677788899999999999999998     77776666


Q ss_pred             HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhccCchhhhhhcccCCchhhHHHHHHHHHHHhhcccCcchhHHHhhhccc
Q 014628          283 LGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVN  362 (421)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~g  362 (421)
                      +..+..+.....++.+...+..++.+.+.+...+....++.|..|+++|+++.++.+..... |.++++.+.+.+.+..+
T Consensus        86 ~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~l~~~l~~~~~  164 (405)
T TIGR00891        86 LFSAGTLACGFAPGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAV-GAVVAAQVYSLVVPVWG  164 (405)
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHH-HHHHHHHHHHHHHHhcC
Confidence            66666666656667777777778888888888888888999999999999999999665555 88899988888887654


Q ss_pred             -cchhhhHHHH
Q 014628          363 -NWRKTTLALT  372 (421)
Q Consensus       363 -~~~~~~~~~~  372 (421)
                       +|+..+.+.+
T Consensus       165 ~~w~~~f~~~~  175 (405)
T TIGR00891       165 DGWRALFFISI  175 (405)
T ss_pred             ccHHHHHHHHH
Confidence             3666665443

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.34  E-value=1.5e-11  Score=112.44  Aligned_cols=153  Identities=17%  Similarity=0.157  Sum_probs=114.6

Q ss_pred             HHHHHHhhHHHHHhhCCccchh-HHHhhhhHHHHHHhhhhhHHHhhhccccchhhHHHHHHHHHHHHHHHHHHhhhhhHH
Q 014628          221 GAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYG  299 (421)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (421)
                      ..+....|. +.+.++.+.... ...+...++..++.++.|++.||+|||     +.+..+..+...........++.+.
T Consensus        11 ~~~~~~~~~-~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r-----~~~~~~~~~~~~~~~~~~~~~~~~~   84 (399)
T TIGR00893        11 ANLSFAAPM-LQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGAR-----KTLAVFIVIWGVFTGLQAFAGAYVS   84 (399)
T ss_pred             HhhhHhHHH-HHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhcCcc-----eeeHHHHHHHHHHHHHHHHHcCHHH
Confidence            344444555 455567665444 445777888899999999999999998     6666666666555555555667777


Q ss_pred             HHHHHHHHHHHHHhccCchhhhhhcccCCchhhHHHHHHHHHHHhhcccCcchhHHHhhhccccchhhhHHHHHHHHHHH
Q 014628          300 FLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFFLAA  379 (421)
Q Consensus       300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~  379 (421)
                      ..+..++.+++.+...+....++.|.+|+++|++++++.+..... |..++|.+.+.+.+..+ |+..+...+...++..
T Consensus        85 ~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~-g~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~  162 (399)
T TIGR00893        85 LYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGL-GGIIGGPLVGWILIHFS-WQWAFIIEGVLGIIWG  162 (399)
T ss_pred             HHHHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchH-HHHHHHHHHHHHHHhCC-chHHHHHHHHHHHHHH
Confidence            777888888888888888899999999999999999999666555 88999999998888765 7777776665544444


Q ss_pred             HH
Q 014628          380 GI  381 (421)
Q Consensus       380 ~~  381 (421)
                      +.
T Consensus       163 ~~  164 (399)
T TIGR00893       163 VL  164 (399)
T ss_pred             HH
Confidence            33

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=99.33  E-value=5.2e-11  Score=110.18  Aligned_cols=170  Identities=18%  Similarity=0.136  Sum_probs=110.5

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhCCccchh-HHHhhhhHHHHHHhhhhhHHHhhhccccchhhHHHHHHH
Q 014628          203 EKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAAT  281 (421)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~  281 (421)
                      ++.++...+...........+....|.+ ++. +.++.+. ...+...++..++.+..|+++||++||     +.+..+.
T Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~~~-g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~-----~~~~~~~   98 (438)
T TIGR00712        26 WQVFLGIFFGYAAYYLVRKNFALAMPYL-VEQ-GFSKGELGFALSAISIAYGFSKFIMGSVSDRSNPR-----VFLPAGL   98 (438)
T ss_pred             HHHHHHHHHHHHHHHHHhccHHhhhHHH-HHc-CCCHhHhHHHHHHHHHHHHHhhhccchhhhccCCc-----eehHHHH
Confidence            3444444444444444444445556654 443 6776555 444677788899999999999999998     5555554


Q ss_pred             HHHHHHHHHHHhh----hhhHHHHHHHHHHHHHHHhccCchhhhhhcccCCchhhHHHHHHHHHHHhhcccCcchhHHHh
Q 014628          282 FLGAISCLTAFCL----SSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVL  357 (421)
Q Consensus       282 ~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l  357 (421)
                      ++..+..+.....    .+.+...+..++.+++.+..+++....+.+.+|+++|++++++.+..... |..++|.+.+..
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~-g~~~~~~l~~~~  177 (438)
T TIGR00712        99 ILSAAVMLLMGFVPWATSSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSERGTIVSIWNCAHNI-GGGIPPLLVLLG  177 (438)
T ss_pred             HHHHHHHHHHhccccccchHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCcccchhHHHHHHHHHHh-HhHHHHHHHHHH
Confidence            4444444333222    23334444555666666666777778888999999999999999766666 777788777765


Q ss_pred             hhccccchhhhHHHHHHHHHHHH
Q 014628          358 QDHVNNWRKTTLALTSIFFLAAG  380 (421)
Q Consensus       358 ~~~~g~~~~~~~~~~~~~~~~~~  380 (421)
                      .+...+|+..|+..+.+.++..+
T Consensus       178 ~~~~~~w~~~f~~~~~~~~i~~~  200 (438)
T TIGR00712       178 MAWFNDWHAALYFPAICAIIVAL  200 (438)
T ss_pred             HHHhhhhHHHHHHHHHHHHHHHH
Confidence            55444588888877766555443

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=99.33  E-value=1e-10  Score=109.40  Aligned_cols=176  Identities=11%  Similarity=-0.043  Sum_probs=120.8

Q ss_pred             hhcch-hHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhCCccchh-HHHhhhhHHHHHHhhhhhHHHhh-hccccchhhHH
Q 014628          200 LLQEK-VYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQ-MGATISNAFKL  276 (421)
Q Consensus       200 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~-~~~~~~~~~~~  276 (421)
                      .+++| .++......++..+.++++..+++.|+.+.++.+.... ..............+++|+++|| +|||     +.
T Consensus        16 ~~~~p~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r-----~~   90 (500)
T PRK09584         16 AFKQPKAFYLIFSIELWERFGYYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTK-----RV   90 (500)
T ss_pred             hhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchH-----HH
Confidence            34555 47777777788888899999999999998888886544 22223333333445689999999 5998     66


Q ss_pred             HHHHHHHHHHHHHHHHhhh-hhHHHHHHHHHHHHHHHhccCchhhhhhcccCCc--hhhHHHHHHHHHHHhhcccCcchh
Q 014628          277 LSAATFLGAISCLTAFCLS-SLYGFLALFTVGELLVFATQAPVNYVCLHSVKPS--LRALSMAISTVSIHIFGDVPSSPL  353 (421)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~g~~~~~~~~~g~~~~~~~  353 (421)
                      +..+.++..+...+....+ +.+...+...+.+.+.+...+....+..+.+|++  .+..+.++.+...+. |..++|.+
T Consensus        91 ~~~g~~~~~ig~~l~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~i-G~~~gp~i  169 (500)
T PRK09584         91 IMLGAIVLAIGYALVAWSGHDAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINI-GSFFSMLA  169 (500)
T ss_pred             HHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHH-HHHHHHHH
Confidence            6666665555544444432 3333444445566677766777778888888764  345677877667776 88999999


Q ss_pred             HHHhhhccccchhhhHHHHHHHHHHHHHH
Q 014628          354 VGVLQDHVNNWRKTTLALTSIFFLAAGIW  382 (421)
Q Consensus       354 ~g~l~~~~g~~~~~~~~~~~~~~~~~~~~  382 (421)
                      .|++.+..| |+..|...++...++.+.+
T Consensus       170 ~g~l~~~~g-~~~~F~i~~i~~~i~~i~~  197 (500)
T PRK09584        170 TPWLAAKYG-WSVAFALSVVGMLITVVNF  197 (500)
T ss_pred             HHHHHHhhC-HHHHHHHHHHHHHHHHHHH
Confidence            999999876 8788887665544544433

>PRK10504 putative transporter; Provisional

Probab=99.33  E-value=7.6e-11  Score=110.36  Aligned_cols=168  Identities=14%  Similarity=0.108  Sum_probs=125.1

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhCCccchh-HHHhhhhHHHHHHhhhhhHHHhhhccccchhhHHHHHHHH
Q 014628          204 KVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATF  282 (421)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~  282 (421)
                      +.++.+.+..++.....+.+..++|.+.++ ++.++... .......++..++.++.|+++||+|||     +.+..+..
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r-----~~~~~~~~   83 (471)
T PRK10504         10 WQLWIVAFGFFMQSLDTTIVNTALPSMAQS-LGESPLHMHMVIVSYVLTVAVMLPASGWLADRVGVR-----NIFFTAIV   83 (471)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHHH-hCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchH-----HHHHHHHH
Confidence            456666676777777777888889998876 66665444 334556677788999999999999998     66665555


Q ss_pred             HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhccCchhhhhhcccCCchhhHHHHHHHHHHHhhcccCcchhHHHhhhccc
Q 014628          283 LGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVN  362 (421)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~g  362 (421)
                      +.....+.....++.+..++..++.+++.+...+.....+.+.+|+++|+++.++.+...+. |..++|.+.|.+.+..+
T Consensus        84 ~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~g~~~~g~l~~~~g  162 (471)
T PRK10504         84 LFTLGSLFCALSGTLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQV-GPLLGPALGGLLVEYAS  162 (471)
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHH-HHHhhhHHHHHHHhhcc
Confidence            55554444445566666677777888888877778888889999999999999999766565 88999999999998765


Q ss_pred             cchhhhHHHHHHHHHHH
Q 014628          363 NWRKTTLALTSIFFLAA  379 (421)
Q Consensus       363 ~~~~~~~~~~~~~~~~~  379 (421)
                       |+..|.+......+..
T Consensus       163 -w~~~f~~~~~~~~l~~  178 (471)
T PRK10504        163 -WHWIFLINIPVGIIGA  178 (471)
T ss_pred             -HHHHHHHHHHHHHHHH
Confidence             7777776655544433

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.32  E-value=7.7e-12  Score=112.34  Aligned_cols=127  Identities=18%  Similarity=0.158  Sum_probs=117.9

Q ss_pred             ccccchhhHHHHhhhhcCCch-HHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhhhhhhhccchhhhhhccCCCCCchh
Q 014628            2 VGLLVASPIFASLAKSHNPFR-LIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTA   80 (421)
Q Consensus         2 lg~~i~~~~~g~l~Dr~Grr~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~   80 (421)
                      ++..++.++.+++.||+|||+ .+..+..+..++.+.....++.+.+.+..++.|++.+...+....++.|..|+++|++
T Consensus       222 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  301 (352)
T cd06174         222 LGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPSLALLLVALLLLGFGLGFAFPALLTLASELAPPEARGT  301 (352)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhccchhHHHHHHhhcCHHHHHH
Confidence            356778899999999999999 9999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhhHHHhHHhhhhcchhHHHHHHHHHHHHHHHHHHH
Q 014628           81 WLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAF  128 (421)
Q Consensus        81 ~~~~~~~~~~~G~~~g~~~~~~l~~~~~wr~~f~~~~~~~~~~~~~~~  128 (421)
                      .+++.+....+|..+++.+.+.+.+..+|+..+++.+++.++..+..+
T Consensus       302 ~~~~~~~~~~~~~~i~~~i~g~l~~~~~~~~~~~~~~~~~~i~~i~~~  349 (352)
T cd06174         302 ASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALLAALLLL  349 (352)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHhe
Confidence            999999999999999999999999989999999999988777666554

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>PRK03699 putative transporter; Provisional

Probab=99.32  E-value=1.4e-10  Score=105.84  Aligned_cols=169  Identities=9%  Similarity=0.031  Sum_probs=120.8

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhCCccchh-HHHhhhhHHHHHHhhhhhHHHhhhccccchhhHHHHHHHH
Q 014628          204 KVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATF  282 (421)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~  282 (421)
                      +..+...+..++.......+...+|.+.+ .++.+..+. ...+...++..++.++.|++.||+|||     +.+..+..
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~g~~~~~i~~-~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~g~r-----~~~~~~~~   80 (394)
T PRK03699          7 KLTWISFLSYALTGALVIVTGMVMGPIAE-YFNLPVSSMSNTFTFLNAGILISIFLNAWLMEIIPLK-----RQLIFGFA   80 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhHHHHH-HhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH-----HHHHHHHH
Confidence            34444445555555555666667777655 467775554 444667788899999999999999998     77776666


Q ss_pred             HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhccCchhhhhhcccCCchhhHHHHHHHHHHHhhcccCcchhHHHhhhccc
Q 014628          283 LGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVN  362 (421)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~g  362 (421)
                      +..+..++....++.+...+...+.+.+.+...+.....+.+.+|+++|+.+.+..+..... |+.++|.+.+.+.+...
T Consensus        81 ~~~i~~~l~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-g~~~~~~~~~~l~~~~~  159 (394)
T PRK03699         81 LMILAVAGLMFSHSLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQRGSRLLFTDSFFSM-AGMIFPIIAAYLLARSI  159 (394)
T ss_pred             HHHHHHHHHHHcchHHHHHHHHHHHHHhhHhhccchhHHhhhhcccchHHHHHHHHHHHHHH-HHHHHHHHHHHHHhccc
Confidence            66666655555667776777777778877777777888889999888999999988655555 77788888888776544


Q ss_pred             cchhhhHHHHHHHHHHH
Q 014628          363 NWRKTTLALTSIFFLAA  379 (421)
Q Consensus       363 ~~~~~~~~~~~~~~~~~  379 (421)
                      +|+..+...+...++..
T Consensus       160 gw~~~f~~~~~~~~~~~  176 (394)
T PRK03699        160 EWYWVYACIGLVYVAIF  176 (394)
T ss_pred             cHHHHHHHHHHHHHHHH
Confidence            58777776665544433

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=99.31  E-value=8e-11  Score=103.06  Aligned_cols=176  Identities=16%  Similarity=0.098  Sum_probs=145.1

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhCCccchh-HHHhhhhHHHHHHhhhhhHHHhhhccccchhhHHHHHHHH
Q 014628          204 KVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATF  282 (421)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~  282 (421)
                      ...+.+.++.+......+...-.+|...+| ++.+.... ...+.+.++..++.++...+.||+.||     +.+.....
T Consensus        13 ~~l~aLa~~~F~igttEfv~~gLLp~iA~d-l~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr-----~lLl~~l~   86 (394)
T COG2814          13 LALLALALAAFAIGTTEFVPVGLLPPIAAD-LGVSEGAAGQLITAYALGVALGAPLLALLTGRLERR-----RLLLGLLA   86 (394)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHhchHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccchH-----HHHHHHHH
Confidence            344555666666677777777788888777 55665444 556888899999999999999999999     89999999


Q ss_pred             HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhccCchhhhhhcccCCchhhHHHHHHHHHHHhhcccCcchhHHHhhhccc
Q 014628          283 LGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVN  362 (421)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~g  362 (421)
                      +..+..++....++.+..++.=.+.++..+..++....+..+.+|+++|+++.++.+..... +.++|.++..++.|.+|
T Consensus        87 lFi~~n~l~alAp~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tl-A~v~GvPLGt~ig~~~G  165 (394)
T COG2814          87 LFIVSNLLSALAPSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTL-ATVLGVPLGTFLGQLFG  165 (394)
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHH-HHHHhccHHHHHHHHhh
Confidence            99999999998999999999999999999999999999999999999999999999655555 88999999999999988


Q ss_pred             cchhhhHHHHHHHHHHHHHHHHhhhhc
Q 014628          363 NWRKTTLALTSIFFLAAGIWFVGIFLK  389 (421)
Q Consensus       363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~  389 (421)
                       |+.+|+..+.+.++..+...  +.+|
T Consensus       166 -WR~~F~~ia~l~ll~~~~~~--~~lP  189 (394)
T COG2814         166 -WRATFLAIAVLALLALLLLW--KLLP  189 (394)
T ss_pred             -HHHHHHHHHHHHHHHHHHHH--HhCC
Confidence             99999988877655554433  3445

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=99.31  E-value=1.6e-11  Score=111.56  Aligned_cols=158  Identities=16%  Similarity=0.138  Sum_probs=114.3

Q ss_pred             HHHHHHHHHHHHHhhHHHHHhhCCccchh-HHHhhhhHHHHHHhhhhhHHHhhhccccchhhHHHHHHHHHHHHHHHHHH
Q 014628          214 IAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAF  292 (421)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (421)
                      ++.......+....|.+ .+.++.+..+. ...+...++..++.++.|+++||+|||     +.+..+.++..+..++..
T Consensus         5 ~~~~~~~~~~~~~~~~~-~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r-----~~~~~~~~~~~~~~~~~~   78 (379)
T TIGR00881         5 AAYYLVRKNFALAMPYL-VEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPR-----VFLPIGLILCAIVNLFFG   78 (379)
T ss_pred             hHHHHhHHhhhhhhHHH-HHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCe-----ehhHHHHHHHHHHHHHHH
Confidence            34444555566666654 45567765544 445777888899999999999999999     777777766666666666


Q ss_pred             hhhhhHHHHHHHHHHHHHHHhccCchhhhhhcccCCchhhHHHHHHHHHHHhhcccCcch-hHHHhhhccccchhhhHHH
Q 014628          293 CLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSP-LVGVLQDHVNNWRKTTLAL  371 (421)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~-~~g~l~~~~g~~~~~~~~~  371 (421)
                      ..++.+..++..++.+++.+...+....++.+.+|+++|+++.++.+..... |..++|. +.+.+.+.. +++..+++.
T Consensus        79 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~-~~~~~~~~~  156 (379)
T TIGR00881        79 FSTSLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNV-GGGLLPPLVLFGIAELY-SWHWVFIVP  156 (379)
T ss_pred             HhhhHHHHHHHHHHHHhhccccCCchHHHHHHhcCHhhheeeEeehhccchh-HHHHHHHHHHHHHHhcC-CchhHHHHH
Confidence            6677777777777888888888888899999999999999999998655555 8888884 555555543 466666666


Q ss_pred             HHHHHHHH
Q 014628          372 TSIFFLAA  379 (421)
Q Consensus       372 ~~~~~~~~  379 (421)
                      +.+.++..
T Consensus       157 ~~~~~~~~  164 (379)
T TIGR00881       157 GIIAIIVS  164 (379)
T ss_pred             HHHHHHHH
Confidence            55544433

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=99.31  E-value=8.7e-11  Score=109.26  Aligned_cols=171  Identities=12%  Similarity=-0.017  Sum_probs=124.2

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhCCccchh-HHHhhhhHHHHHHhhhhhHHHhh-hccccchhhHHHHHH
Q 014628          203 EKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQ-MGATISNAFKLLSAA  280 (421)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~-~~~~~~~~~~~~~~~  280 (421)
                      .+.++..+...+...+.+++...+++.|+++..+.+.... ...........+..+++|+++|| +|||     +.+..+
T Consensus        13 p~~~~~~~~~~~~er~~~y~~~~~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r-----~~~~~g   87 (489)
T PRK10207         13 PRPFFMIFFVELWERFGYYGVQGILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTK-----RTIVLG   87 (489)
T ss_pred             ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchH-----HHHHHH
Confidence            3556666666777888999999999999999888876544 33344444555667789999999 9999     777777


Q ss_pred             HHHHHHHHHHHHhhhh-hHHHHHHHHHHHHHHHhccCchhhhhhcccCCc--hhhHHHHHHHHHHHhhcccCcchhHHHh
Q 014628          281 TFLGAISCLTAFCLSS-LYGFLALFTVGELLVFATQAPVNYVCLHSVKPS--LRALSMAISTVSIHIFGDVPSSPLVGVL  357 (421)
Q Consensus       281 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~g~~~~~~~~~g~~~~~~~~g~l  357 (421)
                      .++..+..+......+ .....+...+.+.+.+...+....++.+.+|++  +|+.+.++.+...+. |..++|.+.|++
T Consensus        88 ~~~~~~g~~~~~~~~~~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~ni-g~~~g~~l~g~l  166 (489)
T PRK10207         88 AIVLAIGYFMTGMSLLKPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINI-GSLISLSLAPVI  166 (489)
T ss_pred             HHHHHHHHHHHHHhccchhHHHHHHHHHHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHH-HHHHHHHHHHHH
Confidence            7766666555544433 222334556667777777888889999999886  457788888777777 989999999999


Q ss_pred             hhccccchhhhHHHHHHHHHHHH
Q 014628          358 QDHVNNWRKTTLALTSIFFLAAG  380 (421)
Q Consensus       358 ~~~~g~~~~~~~~~~~~~~~~~~  380 (421)
                      .++.| |+..|++..+....+.+
T Consensus       167 ~~~~g-w~~~F~i~~i~~~~~~~  188 (489)
T PRK10207        167 ADKFG-YSVTYNLCGAGLIIALL  188 (489)
T ss_pred             HHhhC-hHHHHHHHHHHHHHHHH
Confidence            99876 87877775544433333

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.31  E-value=2e-11  Score=111.29  Aligned_cols=125  Identities=14%  Similarity=0.111  Sum_probs=103.8

Q ss_pred             cchhhHHHHhhhhcCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhhhhhhhccchhhhhhccCCCCCchhHHHH
Q 014628            5 LVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSM   84 (421)
Q Consensus         5 ~i~~~~~g~l~Dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~   84 (421)
                      +++.++.|+++||+|||+.+..+.+...+.......+++.+.+++.+++.+++.+...+....+..|..|+ +|++++++
T Consensus       266 i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~g~~~~~~~~~~~~~~p~-~~g~~~~~  344 (393)
T PRK15011        266 IPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGMLMAHSPAILLGLQLLNAIYIGILGGIGMLYFQDLMPG-QAGSATTL  344 (393)
T ss_pred             HHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CcchHHHH
Confidence            45678999999999999988887766666555555677888888899999888887777777888999886 59999999


Q ss_pred             HHHHHHHHhhhHHHhHHhhhhcchhHHHHHHHHHHHHHHHHHHHhc
Q 014628           85 FYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVI  130 (421)
Q Consensus        85 ~~~~~~~G~~~g~~~~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~  130 (421)
                      ++...++|..++|.+++.+.++.||+..|++.+++.++..+..++.
T Consensus       345 ~~~~~~lg~~~g~~l~G~i~~~~g~~~~~~~~~~~~~~~~~~~~~~  390 (393)
T PRK15011        345 YTNTSRVGWIIAGSLAGIVAEIWNYHAVFWFALVMIIATLFCLLRI  390 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhh
Confidence            9999999999999999999999999999998887776655555443

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=99.31  E-value=5e-11  Score=109.15  Aligned_cols=165  Identities=10%  Similarity=0.039  Sum_probs=119.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHHHHhhCCccchh-HHHhhhhHHHHHHhhhhhHHHhhhccccchhhHHHHHHHHHHH
Q 014628          207 VVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGA  285 (421)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~  285 (421)
                      ....+.+.+............| .+++.++.+..+. ...+...++..++.+..|++.||+|||     +.+..+.++..
T Consensus        11 ~~~~~~~~~~~~d~~~~~~~~~-~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r-----~~~~~~~~~~~   84 (412)
T TIGR02332        11 IFLFILFIFSFLDRINIGFAGL-TMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAIIGAR-----RWIAGIMVLWG   84 (412)
T ss_pred             HHHHHHHHHHHhhhhhHHHHHH-hhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChH-----HHHHHHHHHHH
Confidence            3333433443444444445555 5666678776555 445777788899999999999999999     77777777767


Q ss_pred             HHHHHHHhhhhhHHHHHHHHHHHHHHHhccCchhhhhhcccCCchhhHHHHHHHHHHHhhcccCcchhHHHhhhc-----
Q 014628          286 ISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDH-----  360 (421)
Q Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~-----  360 (421)
                      +..+.....++.+.+.+.-++.+++.+...+....++.+.+|+++|++++++.+..... |..+++.+.+++.+.     
T Consensus        85 ~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~-g~~~~~~~~~~l~~~~~~~~  163 (412)
T TIGR02332        85 IASTATMFATGPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPV-TMALGLILSGYILALDGLMA  163 (412)
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhCCCCCC
Confidence            66666666677777777777888888877777778889999999999999999766665 888999898888752     


Q ss_pred             cccchhhhHHHHHHHHHH
Q 014628          361 VNNWRKTTLALTSIFFLA  378 (421)
Q Consensus       361 ~g~~~~~~~~~~~~~~~~  378 (421)
                      ..+|+..|++.+...++.
T Consensus       164 ~~gwr~~f~~~~~~~l~~  181 (412)
T TIGR02332       164 LKGWQWLFLLEGFPSVIL  181 (412)
T ss_pred             ccchhHHHHHHHHHHHHH
Confidence            124888888766554443

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>TIGR00895 2A0115 benzoate transport

Probab=99.30  E-value=1.7e-11  Score=112.16  Aligned_cols=153  Identities=14%  Similarity=0.171  Sum_probs=111.9

Q ss_pred             HHHHHHHHHHhhHHHHHhhCCccchh-HHHhhhhHHHHHHhhhhhHHHhhhccccchhhHHHHHHHHHHHHHHHHHHhhh
Q 014628          217 NFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLS  295 (421)
Q Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  295 (421)
                      .........+.|.+.++ ++.+.... .......++.+++.++.|+++||++||     +.+..+..+..+..+.....+
T Consensus        30 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~-----~~~~~~~~~~~~~~~~~~~~~  103 (398)
T TIGR00895        30 GYDLAAMGFAAPAISAE-WGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRK-----RVLLWSILLFSVFTLLCALAT  103 (398)
T ss_pred             HHHHHHHHhhHHHHhhc-cCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhH-----HHHHHHHHHHHHHHHHHHHcc
Confidence            33344455556665544 66665444 344666788899999999999999998     777666666666665555566


Q ss_pred             hhHHHHHHHHHHHHHHHhccCchhhhhhcccCCchhhHHHHHHHHHHHhhcccCcchhHHHhhhccccchhhhHHHHHHH
Q 014628          296 SLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIF  375 (421)
Q Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~  375 (421)
                      +.+...+..++.+++.+...+....++.+..|+++|+++.++.+..... |..++|.+.+++.+..+ |+..+.+.+...
T Consensus       104 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~-g~~~~~~~~~~l~~~~g-~~~~~~~~~~~~  181 (398)
T TIGR00895       104 NVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPI-GAAVGGFLAGWLIPVFG-WRSLFYVGGIAP  181 (398)
T ss_pred             chHHHHHHHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHH-HHHHHHHHHHHHhhccc-ceeehhhhhhHH
Confidence            7776777777777777778888899999999999999999999655555 88999999999988765 666676664443


Q ss_pred             HH
Q 014628          376 FL  377 (421)
Q Consensus       376 ~~  377 (421)
                      .+
T Consensus       182 ~~  183 (398)
T TIGR00895       182 LL  183 (398)
T ss_pred             HH
Confidence            33

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=99.30  E-value=1e-10  Score=106.41  Aligned_cols=147  Identities=12%  Similarity=-0.012  Sum_probs=104.8

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhCCccchh-HHHhhhhHHHHHHhhhhhHHHhhhccccchhhHHHHHHHH
Q 014628          204 KVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATF  282 (421)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~  282 (421)
                      |.++.+.+..++............+....+ .+.++... .......+...+..++.|+++||++||     +.+..+..
T Consensus         3 ~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr-----~vl~~~~~   76 (393)
T PRK11195          3 KGFYAIMAAQFFSALADNALLFAAIALLKE-LHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSFPKG-----RVMFIANG   76 (393)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhccCCc-----hhhHHHHH
Confidence            456666666666666555555555555544 44443333 444667788899999999999999999     77766666


Q ss_pred             HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhccCchhhhhhcccCCchhhHHHHHHHHHHHhhcccCcchhHHHhhhc
Q 014628          283 LGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDH  360 (421)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~  360 (421)
                      +..+..+......+.   .+..++.+.+.+...+...+++.|.+|+++|++++|+.+..... +.++||.+.|++.+.
T Consensus        77 ~~~~~~~~~~~~~~~---~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~-~~~~Gp~lgG~l~~~  150 (393)
T PRK11195         77 IKLLGCLLMLFGIHP---LLAYGLVGIGAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIA-AILLGTVLGGALADP  150 (393)
T ss_pred             HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence            555444433333332   34445677888888888999999999999999999999655554 889999999999985

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=99.30  E-value=7.1e-11  Score=107.57  Aligned_cols=155  Identities=15%  Similarity=0.064  Sum_probs=114.3

Q ss_pred             HHHHHHHHHhhHHHHHhhCCccchh-HHHhhhhHHHHHHhhhhhHHHhhhccccchhhHHHHHHHHHHHHHHHHHHhhhh
Q 014628          218 FVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSS  296 (421)
Q Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (421)
                      ..........|.+.++ ++.+..+. ...+...++..++.++.|++.||+|||     +.+..+..+..+..+.....++
T Consensus        19 ~~~~~~~~~~p~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r-----~~~~~~~~~~~~~~~~~~~~~~   92 (385)
T TIGR00710        19 LGIDMYLPAFPEIAAD-LSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRR-----PVLLLGLFIFALSSLGLALSNN   92 (385)
T ss_pred             HHHHHhcccHHHHHHH-hCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCCh-----HHHHHHHHHHHHHHHHHHHHcc
Confidence            3344444455655444 66665444 444677788899999999999999998     7777777666666666666677


Q ss_pred             hHHHHHHHHHHHHHHHhccCchhhhhhcccCCchhhHHHHHHHHHHHhhcccCcchhHHHhhhccccchhhhHHHHHHHH
Q 014628          297 LYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFF  376 (421)
Q Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~  376 (421)
                      .+...+..++.+++.+...+....++.|..|+++|+++.++.+..... |..++|.+.+.+.+..+ |+..+++.+...+
T Consensus        93 ~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~g~~~~~~l~~~~~-~~~~~~~~~~~~~  170 (385)
T TIGR00710        93 IETLLVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLAL-APAVAPLLGGYILVWLS-WHAIFAFLSLAGI  170 (385)
T ss_pred             HHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHcC-HHHHHHHHHHHHH
Confidence            777777777778877777788888999999999999999999766665 88899999999888765 7676766655544


Q ss_pred             HHHH
Q 014628          377 LAAG  380 (421)
Q Consensus       377 ~~~~  380 (421)
                      +..+
T Consensus       171 ~~~~  174 (385)
T TIGR00710       171 LLSA  174 (385)
T ss_pred             HHHH
Confidence            4433

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=99.29  E-value=1.6e-10  Score=104.51  Aligned_cols=147  Identities=17%  Similarity=0.091  Sum_probs=106.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhHHHHHhhCCccchh-HHHhhhhHHHHHHhhhhhHHHhhhccccchhhHHHHHHHHHH
Q 014628          206 YVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLG  284 (421)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~  284 (421)
                      ++...+..+........+..+.|.++++.++.++... .......++..++.++.|+++||+|||     +.+..+.++.
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r-----~~~~~~~~~~   77 (366)
T TIGR00886         3 LFFSWFGFFLSFSVWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPR-----YTTTLSLLLL   77 (366)
T ss_pred             hHHHHHHHHHHHHHHHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCch-----HHHHHHHHHH
Confidence            4555566666666777778888877778888887655 444677888999999999999999998     7777777666


Q ss_pred             HHHHHHHHhhh-hhHHHHHHHHHHHHHHHhccCchhhhhhcccCCchhhHHHHHHHHHHHhhcccCcchhHHHhhh
Q 014628          285 AISCLTAFCLS-SLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQD  359 (421)
Q Consensus       285 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~  359 (421)
                      .+..+.....+ +.+...+..++.+.+.+ ...+...++.+.+|+++|+++.++.....+. |..+++.+.+.+.+
T Consensus        78 ~i~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~-g~~~~~~i~~~l~~  151 (366)
T TIGR00886        78 AIPCLWAGLAVQSYSVLLLLRLFIGIAGG-SFASCMPWISFFFPKKIQGTALGLAAGWGNM-GGGVAQFVMPPIIG  151 (366)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHhch-hhHhHHHHHHHhcCHhhhhHHHHHHHHHhHH-HHHHHHHHHHHHHH
Confidence            66666665566 66666666666665543 4455677888999999999999998644444 66666666665554

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=99.28  E-value=1.2e-10  Score=106.38  Aligned_cols=163  Identities=15%  Similarity=0.046  Sum_probs=114.4

Q ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHhhCCccchh-HHHhhhhHHHHHHhhhhhHHHhhhccccchhhHHHHHHHHHHHHHH
Q 014628          210 VLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISC  288 (421)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~  288 (421)
                      .................+|.+.++ .+.+.... ...+...++..++.++.|+++||+|||     +.+..+.....+..
T Consensus         9 ~~~~~~~~~~~~~~~~~lp~~~~~-~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r-----~~l~~~~~~~~i~~   82 (392)
T PRK10473          9 FALVLLYPAGIDMYLVGLPRIAAD-LNASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRK-----PVAIPGAALFIIAS   82 (392)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHH-hCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCCh-----HHHHHHHHHHHHHH
Confidence            333344444555555677777665 56665444 344666778889999999999999998     77776666666666


Q ss_pred             HHHHhhhhhHHHHHHHHHHHHHHHhccCchhhhhhcccCCchhhHHHHHHHHHHHhhcccCcchhHHHhhhccccchhhh
Q 014628          289 LTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTT  368 (421)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~  368 (421)
                      ......++.+...+..++.+.+.+...+....++.+.+|+++|+++.++.+..... +..++|.+.+.+.+..+ |+..+
T Consensus        83 ~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i-~~~~~~~i~~~l~~~~g-~~~~~  160 (392)
T PRK10473         83 LLCSLAETSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCI-IPVLAPVLGHLIMLKFP-WQSLF  160 (392)
T ss_pred             HHHHHhCcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhCcC-hHHHH
Confidence            55555566665566666667776666777788889999999999999999766555 77888988888777654 76667


Q ss_pred             HHHHHHHHHHHH
Q 014628          369 LALTSIFFLAAG  380 (421)
Q Consensus       369 ~~~~~~~~~~~~  380 (421)
                      ++.+.+.++..+
T Consensus       161 ~~~~~~~~i~~~  172 (392)
T PRK10473        161 YTMAAMGILVLL  172 (392)
T ss_pred             HHHHHHHHHHHH
Confidence            666655444443

>PRK10091 MFS transport protein AraJ; Provisional

Probab=99.27  E-value=1.7e-10  Score=104.87  Aligned_cols=168  Identities=15%  Similarity=0.021  Sum_probs=124.6

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhCCccchh-HHHhhhhHHHHHHhhhhhHHHhhhccccchhhHHHHHHHH
Q 014628          204 KVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATF  282 (421)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~  282 (421)
                      +.++...+..+............+|.+.++ ++.+..+. ...+...++..++.++.|++.||+|||     +.+..+..
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r-----~~~~~~~~   76 (382)
T PRK10091          3 KVILSLALGTFGLGMAEFGIMGVLTELAHD-VGISIPAAGHMISYYALGVVVGAPIIALFSSRYSLK-----HILLFLVA   76 (382)
T ss_pred             chHHHHHHHHHHHHhhHHHHHhChHHHHHH-cCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccCccH-----HHHHHHHH
Confidence            344555555666666666666777776554 66665444 445777889999999999999999998     77777777


Q ss_pred             HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhccCchhhhhhcccCCchhhHHHHHHHHHHHhhcccCcchhHHHhhhccc
Q 014628          283 LGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVN  362 (421)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~g  362 (421)
                      +..+..++....++.+.+++.-++.+++.+...+.......+..++++|+++++........ |..++|.+.+++.+..+
T Consensus        77 ~~~~~~~l~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~g~~l~~~l~~~~g  155 (382)
T PRK10091         77 LCVIGNAMFTLSSSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTV-ANLLGIPLGTYLSQEFS  155 (382)
T ss_pred             HHHHHHHHHHHhCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHH-HHHHhccHHHHHhhhcc
Confidence            77777777777778888877778888877766666677778888888999999998655555 88889999999888765


Q ss_pred             cchhhhHHHHHHHHHHH
Q 014628          363 NWRKTTLALTSIFFLAA  379 (421)
Q Consensus       363 ~~~~~~~~~~~~~~~~~  379 (421)
                       |+..+...+...++..
T Consensus       156 -wr~~f~~~~~~~~~~~  171 (382)
T PRK10091        156 -WRYTFLLIAVFNIAVL  171 (382)
T ss_pred             -HHHHHHHHHHHHHHHH
Confidence             7777777666544433

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=99.27  E-value=1.6e-10  Score=108.69  Aligned_cols=163  Identities=14%  Similarity=0.101  Sum_probs=122.8

Q ss_pred             HHHHHHHHHHHHHHHHHHhhHHHHHhhCCccchh-HHHhhhhHHHHHHhhhhhHHHhhhccccchhhHHHHHHHHHHHHH
Q 014628          209 NVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAIS  287 (421)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~  287 (421)
                      ..+..+.............|.+.++ ++.+.... .......++..++.++.|++.||+|||     +.+..+..+..+.
T Consensus         7 ~~~~~~~~~~~~~~~~~~~p~~~~~-~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r-----~~~~~~~~~~~~~   80 (485)
T TIGR00711         7 LMLGTFMAVLDSTIVNVAIPTIAGD-LGSSLSQVQWVITSYMLANAISIPLTGWLAKRFGTR-----RLFLISTFAFTLG   80 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHh-cCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcH-----HHHHHHHHHHHHH
Confidence            3344444445555566677777665 55554443 455677888999999999999999998     7777777777777


Q ss_pred             HHHHHhhhhhHHHHHHHHHHHHHHHhccCchhhhhhcccCCchhhHHHHHHHHHHHhhcccCcchhHHHhhhccccchhh
Q 014628          288 CLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKT  367 (421)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~  367 (421)
                      .+.....++.+..++..++.+++.+...+....++.+.+|+++|+++.++....... |..++|.+.+++.++.+ |+..
T Consensus        81 ~~~~~~~~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-g~~~g~~~~~~l~~~~~-w~~~  158 (485)
T TIGR00711        81 SLLCGVAPNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLV-APALGPTLGGWIIENYH-WRWI  158 (485)
T ss_pred             HHHHhCcCCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH-HhhhhhccHhHhccCcC-ceeh
Confidence            666666777777777788888888888888889999999999999999999655555 88999999999998765 7777


Q ss_pred             hHHHHHHHHHHH
Q 014628          368 TLALTSIFFLAA  379 (421)
Q Consensus       368 ~~~~~~~~~~~~  379 (421)
                      +++.....++..
T Consensus       159 f~~~~~~~~~~~  170 (485)
T TIGR00711       159 FLINVPIGIIVV  170 (485)
T ss_pred             hhhhhHHHHHHH
Confidence            776655544443

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>PRK03545 putative arabinose transporter; Provisional

Probab=99.27  E-value=1.3e-10  Score=105.90  Aligned_cols=147  Identities=13%  Similarity=0.066  Sum_probs=110.8

Q ss_pred             HHhhHHHHHhhCCccchh-HHHhhhhHHHHHHhhhhhHHHhhhccccchhhHHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Q 014628          225 YWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLAL  303 (421)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (421)
                      ..+|.+. +.++.++.+. ...+...++..++.+..|++.||+|||     +.+..+..+..+..+.....++.+.+.+.
T Consensus        30 ~~~~~l~-~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r-----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  103 (390)
T PRK03545         30 GLLSDIA-QSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNVERR-----KLLIGLFVLFIASHVLSALAWNFTVLLIS  103 (390)
T ss_pred             cchHHHH-hHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChH-----HHHHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence            3456554 4577776555 334566677788889999999999999     78877777777776666667777777777


Q ss_pred             HHHHHHHHHhccCchhhhhhcccCCchhhHHHHHHHHHHHhhcccCcchhHHHhhhccccchhhhHHHHHHHHHHH
Q 014628          304 FTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFFLAA  379 (421)
Q Consensus       304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~  379 (421)
                      -++.+.+.+...+....++.+..|+++|++++|+....... |..++|.+.+.+.+..| |+..++..+.+.++..
T Consensus       104 r~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~-g~~ig~~l~~~l~~~~g-w~~~f~~~~~~~~l~~  177 (390)
T PRK03545        104 RIGIAFAHAIFWSITASLAIRVAPAGKKAQALSLLATGTAL-AMVLGLPLGRVIGQYLG-WRTTFLAIGGGALITL  177 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHH-HHHHHhhHHHHHHHHhc-HHHHHHHHHHHHHHHH
Confidence            67777777666777788889999999999999999655555 88999999998888765 7778877766554443

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.27  E-value=4.7e-09  Score=94.14  Aligned_cols=300  Identities=11%  Similarity=0.028  Sum_probs=174.5

Q ss_pred             ccchhhHHHHhhhhcCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhhhhhhhccchhhhhhccCCCCCchhHHH
Q 014628            4 LLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLS   83 (421)
Q Consensus         4 ~~i~~~~~g~l~Dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~   83 (421)
                      +.+.+++.+.+.|+.|.|+.++++...+....+..-+- |-+-+++...+.|+|.+..+..--.++.|+.+++.+.+..+
T Consensus        63 ftv~~l~~psiv~~i~~K~~lv~ga~~y~~f~~gfl~~-N~y~~yfssallG~Gaallw~GqG~ylt~~st~~tie~Nis  141 (461)
T KOG3098|consen   63 FTVSCLFAPSIVNFLGPKWALVIGATCYAAFPLGFLFP-NSYYLYFSSALLGFGAALLWTGQGGYLTSNSTRETIERNIS  141 (461)
T ss_pred             HHHHHHhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHhc-chHHHHHHHHHhhhhHHheecccceehhhcCChhhHHHHHH
Confidence            46788999999999999999999999998877776554 46677889999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhHHHhHHhhhhc--------chhH-HH----------HHHHHHHHHHHHHHH--HhcccccccccCCcc
Q 014628           84 MFYMCIPTGVALGYVYGGVVGSH--------LNWR-YA----------FWGEAILMLPFAVLA--FVIKPLQLKGFAPAE  142 (421)
Q Consensus        84 ~~~~~~~~G~~~g~~~~~~l~~~--------~~wr-~~----------f~~~~~~~~~~~~~~--~~~~p~~~~~~~~~~  142 (421)
                      +.-+....+.++|..+-..+..+        .+-+ ..          ..+.+++..+..+..  ....|.....     
T Consensus       142 i~Wai~~~~li~Ggi~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~~~~~l~~i~~~~~p~~~~~-----  216 (461)
T KOG3098|consen  142 IFWAIGQSSLIIGGIILFIYFQFSSSSAIITDGTRRLVFEVLFIDFEIKVLFGVLLAISVLSIINFDFLPSKDVV-----  216 (461)
T ss_pred             HHHHHHHHHHHhhhHhheeeeEecccccccccchhhhhcchhhhhHHHHHHHHHHHHHHHHHhhheeecCccchh-----
Confidence            98888888888876654333211        1111 11          111111111110000  0011110000     


Q ss_pred             ccchhhhhhcccccccccCCcccccccchhhhhhhccccchhhhhhhhhhhhhhhHHhhcchhHHHHHHHHHHHHHHHHH
Q 014628          143 SGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGA  222 (421)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (421)
                      ..++.                              .+        ....+..+...+++++++...+....+..++....
T Consensus       217 ~~~~~------------------------------~~--------~~~~~~l~~~~~l~~~~~ml~L~~~f~~tG~~~Sf  258 (461)
T KOG3098|consen  217 NCKSS------------------------------SE--------TSFSELLKLTFKLLKTPKMLLLFPFFFYTGLETSF  258 (461)
T ss_pred             hhhhh------------------------------cc--------ccHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHH
Confidence            00000                              00        11122223344556777777666655544444444


Q ss_pred             HHHHhhHHHHHh--hCCccch--hHHHhhhhHHHHHHhhhhhHHHhhhccccchhhHHHHHHHHHHHHHHHHHH-hhh--
Q 014628          223 YSYWGPKAGYNI--YHMSNAD--MMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAF-CLS--  295 (421)
Q Consensus       223 ~~~~~~~~~~~~--~~~~~~~--~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--  295 (421)
                      .....|..+.-.  .+.+...  .......+++.+++.+..+.+.+|..+...+  ..+.....+-...+++.. ..+  
T Consensus       259 ~~~iypt~i~ft~~~~~n~~~~~ai~~~~~g~g~v~~g~~~~~l~~rir~fg~~--~~~~~~~~~~~~~~~li~l~~p~d  336 (461)
T KOG3098|consen  259 WISIYPTCISFTRKLGSNTTYLIAIYSIGIGLGEVIGGLDFSILSKRIRGFGRK--PTVLIGIIIHLIGFLLIHLSFPND  336 (461)
T ss_pred             HHhccchhhhhhhhccCcchhHHHHHHHHHhHHHHHHHHHHHHHhhhhhhcccC--cchhHHHHHHHHHHHHHhcccccc
Confidence            444445443322  2222111  1222444566666667777777665543221  333333333333332222 111  


Q ss_pred             ---------------hhHHHHHHHHHHHHHHHhccCchhhhhhcccCCchhhHHHHHHHHHHHhhcccCcc
Q 014628          296 ---------------SLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSS  351 (421)
Q Consensus       296 ---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~  351 (421)
                                     +.....+...+.|+.........++++...+ +++|.++.++.- +...++..++-
T Consensus       337 ap~~~t~~~~~~~~~~~~~~~ii~~l~G~~D~~~~t~~~~ii~~~~-~~~~~~~fsi~k-fyq~~~s~v~~  405 (461)
T KOG3098|consen  337 APLRPTDSPPLLFTPSYYLALIIGFLLGFGDACFNTQRYVIIALLY-PDDRAQAFSLFK-FYQSVASCVAF  405 (461)
T ss_pred             CCCCCCcccccccccchhHHHHHHHHHhhHHHHHHHHHHHHHHHHh-cCchHHHHHHHH-HHHHHHHHHHh
Confidence                           2345666777888888888888899999888 777888888874 44443554433

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=99.27  E-value=2.4e-10  Score=104.00  Aligned_cols=144  Identities=15%  Similarity=0.054  Sum_probs=111.4

Q ss_pred             HHHhhHHHHHhhCCccchh-HHHhhhhHHHHHHhhhhhHHHhhhccccchhhHHHHHHHHHHHHHHHHHHhhhhhHHHHH
Q 014628          224 SYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLA  302 (421)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  302 (421)
                      ...+|.+.+ .++.++.+. ...+...++..++.++.|++.||+|||     +.+..+..+..+..+.....++.+.+++
T Consensus        40 ~~~l~~~~~-~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr-----~~~~~~~~~~~~~~~~~~~~~~~~~l~~  113 (394)
T PRK10213         40 VSLLTPMAQ-DLGISEGVAGQSVTVTAFVAMFASLFITQTIQATDRR-----YVVILFAVLLTLSCLLVSFANSFSLLLI  113 (394)
T ss_pred             HhhHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcH-----HHHHHHHHHHHHHHHHHHHHChHHHHHH
Confidence            334566554 466665544 344667788889999999999999999     7777777777666666666677777777


Q ss_pred             HHHHHHHHHHhccCchhhhhhcccCCchhhHHHHHHHHHHHhhcccCcchhHHHhhhccccchhhhHHHHHHH
Q 014628          303 LFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIF  375 (421)
Q Consensus       303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~  375 (421)
                      .-.+.+++.+...+....++.+.+|+++|+++.++.....+. |..++|.+.+.+.+..+ |+..+++.+.+.
T Consensus       114 ~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~-g~~ig~~l~~~l~~~~g-w~~~f~~~~~l~  184 (394)
T PRK10213        114 GRACLGLALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSI-ALVIAAPLGSFLGELIG-WRNVFNAAAVMG  184 (394)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhcC-HHHHHHHHHHHH
Confidence            778888888888888888899999999999999999666665 88999999999998766 777777665443

>PRK12307 putative sialic acid transporter; Provisional

Probab=99.26  E-value=2.3e-10  Score=105.68  Aligned_cols=158  Identities=12%  Similarity=0.083  Sum_probs=114.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhHHHHHhhCCccchh-HHHhhhhHHHHHHhhhhhHHHhhhccccchhhHHHHHHHHHH
Q 014628          206 YVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLG  284 (421)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~  284 (421)
                      +....+..+.............|.+ .+.++.++.+. ...+...++..++.++.|+++||+|||     +.+..+....
T Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~i-~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~g~r-----~~l~~~~~~~   93 (426)
T PRK12307         20 LFSAWLGYVFDGFDFMLIFYIMYLI-KADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKFGRK-----PLMMWSIVAY   93 (426)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHH-HHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCh-----HHHHHHHHHH
Confidence            3333444444444444444455544 45566665444 445677788899999999999999999     7777777777


Q ss_pred             HHHHHHHHhhhhhHHHHHHHHHHHHHHHhccCchhhhhhcccCCchhhHHHHHHHHHHHhhcccCcchhHHHhhhccccc
Q 014628          285 AISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNW  364 (421)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~g~~  364 (421)
                      .+........++.+.+.+.-.+.+++.+...+....++.+..|+++|+++.++....... |.++++.+.+.+.+..+ |
T Consensus        94 ~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~l-g~~~~~~l~~~l~~~~~-w  171 (426)
T PRK12307         94 SVGTGLSGLASGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGI-GNIIAAYFMPSFAEAYG-W  171 (426)
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhH-HHHHHHHHHHHHcccCC-H
Confidence            776666666677777777778888888877888888899999999999999998655555 88888888888877654 7


Q ss_pred             hhhhHHH
Q 014628          365 RKTTLAL  371 (421)
Q Consensus       365 ~~~~~~~  371 (421)
                      +..+++.
T Consensus       172 ~~~f~i~  178 (426)
T PRK12307        172 RAAFFVG  178 (426)
T ss_pred             HHHHHHH
Confidence            7777653

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=99.26  E-value=2.9e-10  Score=106.74  Aligned_cols=166  Identities=14%  Similarity=0.108  Sum_probs=121.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhHHHHHhhCCccch-hHHHhhhhHHHHHHhhhhhHHHhhhccccchhhHHHHHHHHHH
Q 014628          206 YVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNAD-MMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLG  284 (421)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~  284 (421)
                      +..+.+..+....-......-+|.+..+ ++.+..+ ......+.++...+.+..|+++||+|||     +.+..+..+.
T Consensus         8 ~~~~~~~~~~~~ld~tiv~~a~p~i~~~-l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk-----~~l~~~~~~~   81 (495)
T PRK14995          8 LVIIVLVYIPVAIDATVLHVAAPTLSMT-LGASGNELLWIIDIYSLVMAGMVLPMGALGDRIGFK-----RLLMLGGTLF   81 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-----HHHHHHHHHH
Confidence            3444444555555566677778888765 5555433 3445667777788889999999999999     8888777777


Q ss_pred             HHHHHHHHhhhhhHHHHHHHHHHHHHHHhccCchhhhhhccc-CCchhhHHHHHHHHHHHhhcccCcchhHHHhhhcccc
Q 014628          285 AISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSV-KPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNN  363 (421)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~g~  363 (421)
                      .+..+.....++.+..++.-.+.+++.+...+.....+.+.+ |+++|+++.|+....... |..+||.+.+++.++.+ 
T Consensus        82 ~~~~~~~~~a~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~-g~~~gp~lgg~l~~~~g-  159 (495)
T PRK14995         82 GLASLAAAFSPTASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSG-GAAFGPLVGGILLEHFY-  159 (495)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhccCC-
Confidence            777777777778887777777788877776666666666665 568999999999655555 99999999999999865 


Q ss_pred             chhhhHHHHHHHHHHH
Q 014628          364 WRKTTLALTSIFFLAA  379 (421)
Q Consensus       364 ~~~~~~~~~~~~~~~~  379 (421)
                      |++.|++...+.++..
T Consensus       160 wr~~f~i~~~~~~~~~  175 (495)
T PRK14995        160 WGSVFLINVPIVLVVM  175 (495)
T ss_pred             hHHHHHHHHHHHHHHH
Confidence            8888777655544433

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=99.26  E-value=9.1e-10  Score=96.96  Aligned_cols=308  Identities=14%  Similarity=0.046  Sum_probs=166.2

Q ss_pred             chhhHHHHhhhhcCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhhhhhhhccchhhhhhccCCCCCchhHHHHH
Q 014628            6 VASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMF   85 (421)
Q Consensus         6 i~~~~~g~l~Dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~   85 (421)
                      +.-+.+.++.+|+..+.=...+.++..++.++.+++++.+.=+++-++.+++.|........+.. .+++    ...+-+
T Consensus        74 ~~Kl~aP~fi~~v~y~~Ri~~~~~l~~~g~l~va~~~~v~~~l~Gv~las~ssg~GE~tfL~lt~-~y~~----~~l~~w  148 (402)
T PF02487_consen   74 LVKLIAPFFIHRVPYWIRILICVALSAAGMLLVAFSPSVWVRLLGVVLASLSSGLGEVTFLSLTH-FYGK----SSLSAW  148 (402)
T ss_pred             HHHHHhHhhhhhccchHHHHHHHHHHHHHHhheeeccchhHHHHHHHHHhhhhhhhHHHHHHHHH-hcCc----cccccc
Confidence            34456777888887666667777788889999999999998889999999999987777777644 5554    357888


Q ss_pred             HHHHHHHhhhHHHhHHhhhhcch--hHHHHHHHHHHHHHHHHHHHhcccccccccCCccccchhhhhhcccccccccCCc
Q 014628           86 YMCIPTGVALGYVYGGVVGSHLN--WRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLND  163 (421)
Q Consensus        86 ~~~~~~G~~~g~~~~~~l~~~~~--wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (421)
                      +.+.+.+.++|+..-..+.+ .+  -|..+++...+.++..+..++.+|.........+.....       +    .+  
T Consensus       149 ssGTG~aGl~Ga~~y~~lT~-~g~s~~~tll~~~~lp~~~~~~~f~~L~~~~~~~~~~~~~~~~-------~----~~--  214 (402)
T PF02487_consen  149 SSGTGGAGLVGALYYLGLTT-LGLSPRTTLLIMLVLPAIFLLSYFFLLPSPPTNRPYQESESED-------E----AE--  214 (402)
T ss_pred             cCCcChhhHHHHHHHHHHHH-hCcCHHHHHHHHHHHHHHHHHHHHHhhccccccCCCcccCCCC-------c----cc--
Confidence            88888888888877665555 44  477888887776666666666665422111100000000       0    00  


Q ss_pred             ccccccchhhhhhhccccchhhhhhhhhhhhhhhHHhhcchhHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhCCcc-chh
Q 014628          164 HVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSN-ADM  242 (421)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  242 (421)
                        ++...++..+++.+...+    ...++.++..+.++.  ....+.+.+++-+....++.   |.........++ ...
T Consensus       215 --~~~~~~~~~~~~~~~~~~----~~~~~k~~~~k~Ll~--ymiPL~lVY~aEY~InqGv~---~tl~fp~~~~~~r~~Y  283 (402)
T PF02487_consen  215 --DDLLESETSESKPDSSSK----LSFKEKLKRLKPLLW--YMIPLFLVYFAEYFINQGVA---PTLLFPNSFFSPRDQY  283 (402)
T ss_pred             --ccccccccccccccccch----hhHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhchH---HHhcCCccCCCHHHHH
Confidence              000000000000000000    111111222222221  22223333333333333332   222111111121 112


Q ss_pred             -HHHhhhhHHHHHHhhhhhHHHhhhccccchhhHHHHHHHHHHHHH---HHHHHhhhhhHHHHHHHHHHHHHHHhccCch
Q 014628          243 -MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAIS---CLTAFCLSSLYGFLALFTVGELLVFATQAPV  318 (421)
Q Consensus       243 -~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (421)
                       .+...+.++-++++--...+  |+  |+  . +.+...-.+-.+.   -....+.++.|..++.++.-|...|..+...
T Consensus       284 ~~Y~~~YQ~GVFISRSS~~~~--ri--r~--l-wils~LQ~~nl~~~~l~s~~~fipsi~ivf~lif~eGLlGGa~YVNt  356 (402)
T PF02487_consen  284 RWYQLLYQLGVFISRSSLPFF--RI--RR--L-WILSLLQVINLVFLLLQSWYRFIPSIWIVFVLIFYEGLLGGASYVNT  356 (402)
T ss_pred             HHHHHHHHHHHhhhhcceeee--eh--hh--H-HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhHHHHHH
Confidence             33445555555544332221  11  21  1 1111111111111   1122234567777777888888888899888


Q ss_pred             hhhhhcccCCchhhHHHHHHHHHHHhhcccCcc
Q 014628          319 NYVCLHSVKPSLRALSMAISTVSIHIFGDVPSS  351 (421)
Q Consensus       319 ~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~  351 (421)
                      +..+.++.++++|..++|... ....+|-.++.
T Consensus       357 F~~I~~~~~~~~REFslg~vs-vsds~GI~lAg  388 (402)
T PF02487_consen  357 FYRISEEVPPEDREFSLGAVS-VSDSLGILLAG  388 (402)
T ss_pred             HHHHHhcCCHHHHHHHHHHHH-HHhhHHHHHHH
Confidence            989999999999999999994 44444655555

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=99.26  E-value=8.4e-09  Score=92.66  Aligned_cols=320  Identities=13%  Similarity=0.113  Sum_probs=177.0

Q ss_pred             ccchhhHHHHhhhhcCCchHHHHHHHHHHHHHhhhhhh--------h-------hHHHHHHHHHHhhhhhh-hhccchhh
Q 014628            4 LLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSS--------F-------DFWSIAICRMLVGVGEA-SFISLAAP   67 (421)
Q Consensus         4 ~~i~~~~~g~l~Dr~Grr~~~~~~~~~~~~~~~~~~~~--------~-------~~~~l~~~r~l~G~~~~-~~~~~~~~   67 (421)
                      .++.++..|...||..|.+++..+.+.--++..+++..        +       ....+++.-.+.|.-.- .......+
T Consensus        51 ~~~f~~~vG~~iD~~~Rl~~~~~~l~~Qn~sv~~s~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~i~~Las~~~~ia  130 (432)
T PF06963_consen   51 AILFGPWVGRWIDRSPRLKVIRTSLVVQNLSVAASCALFLLLLSYPSSSSQSSWLFIALFALLILLGAIERLASIANTIA  130 (432)
T ss_pred             HHHhhHHHHHHHhCCcchhhHHHHHHHHHHHHHHHHHHHHHHHhCCccccccchHHHHHHHHHHHHHHHHHHHHhhhhhe
Confidence            45678888999999999999877766554433332211        1       12222222223332222 22222333


Q ss_pred             hhhccC------CCCCchhHHHHHHHHHHHHhhhHHHhHHhhhhcchhHHHHHHHHHHHHHHHHHHHhcccccccc---c
Q 014628           68 FIDDNA------PVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKG---F  138 (421)
Q Consensus        68 ~i~~~~------~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~---~  138 (421)
                      +-.||.      +++++.+.++...-.-.+..+++|++.|.+.+..+.+....+.++..++..+.-+++.....+.   .
T Consensus       131 vERDWVvvi~~~~~~~La~~NA~mRRIDL~ckllaPl~vG~l~t~~s~~~~~~~i~~~N~~S~~vEy~~l~~VY~~~P~L  210 (432)
T PF06963_consen  131 VERDWVVVIAGGDPGALARMNATMRRIDLFCKLLAPLFVGLLMTFASPVIAAIFIAGWNLASVFVEYFLLARVYNSVPAL  210 (432)
T ss_pred             eccchhhhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHh
Confidence            445663      3445667777777777788999999999999988999888888888777776665554221111   0


Q ss_pred             CCccccchhhhhhcccccccccCCcccccccchhhhhhhccccchhhhhhhhhhhhhhhHHhhcchhHHHHHHHHHHHHH
Q 014628          139 APAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNF  218 (421)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  218 (421)
                      ..+++.+....          ..    ++.   +..++.......+...+..+...++++..+++|.+..... ..+.++
T Consensus       211 ~~~~~~~~~~~----------~~----~~~---~~~~~~~~~~~~~~~~~~~~~~~~~w~~Y~~q~vflas~a-lalLY~  272 (432)
T PF06963_consen  211 AVKKRSSESES----------SS----DEE---SSSESSSDPSILKRLWNPLRTIIRGWRTYFRQPVFLASFA-LALLYF  272 (432)
T ss_pred             cCCCCCccccc----------cc----ccc---ccccccchhhHHHHHHHHHHHHhccHHHHHhCHHHHHHHH-HHHHHH
Confidence            00111000000          00    000   0000111111111122333444566777778786665444 334444


Q ss_pred             HHHHHHHHhhHHHHHhhCCccchh-HHHhhhhHHHHHHhhhhhHHHhhhccccchhhHHHHHHHHHHHHHHHHHHhh-h-
Q 014628          219 VIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCL-S-  295 (421)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-  295 (421)
                      ..-++...+..|+.+. |.++... .+-....+.++.+.++..++.+|+|..+.-.+  .+..-..+...+....+. . 
T Consensus       273 TVLsf~~lmt~yl~~~-G~s~~~igi~R~~gav~Gl~gT~~~p~l~~riGlvr~G~~--~l~~q~~~L~~~v~~~~~~~~  349 (432)
T PF06963_consen  273 TVLSFGGLMTAYLKSQ-GYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRIGLVRAGLW--SLWWQWVCLALCVVSFWAPGS  349 (432)
T ss_pred             HHhcCcHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHH--HHHHHHHHHHHHHHHHhcCCC
Confidence            4445566677788876 6665444 33366778889999999999999997632211  111111222222222222 1 


Q ss_pred             -----hhHHHHHHHHHHHHHHHhccCchhhhhhcccCCchhhHHHHHHHHHHHh
Q 014628          296 -----SLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHI  344 (421)
Q Consensus       296 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  344 (421)
                           +...++....+.-++.-+.-.....+++|.+|+++||..+|..+...+.
T Consensus       350 ~~~~~s~~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~~~Rg~v~gvq~sl~~l  403 (432)
T PF06963_consen  350 PFSSISAYLLLGGIALSRIGLWSFDLAVTQIMQENVPESERGAVSGVQNSLQSL  403 (432)
T ss_pred             CchhhHHHHHHHHHHHHHHHHHhhhHHHHHhhcccCCHHHhhHHHHHHHHHHHH
Confidence                 2223333344444444455556677889999999999999999766666

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.24  E-value=3.1e-10  Score=104.13  Aligned_cols=156  Identities=13%  Similarity=0.139  Sum_probs=112.6

Q ss_pred             HHHHHHHHHHHHHHhhHHHHHhhCCccchh-HHHhhhhHHHHHHhhhhhHHHhhhccccchhhHHHHHHHHHHHHHHHHH
Q 014628          213 YIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTA  291 (421)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (421)
                      .+.............|.+.++ ++.++.+. ...+...++..++.++.|++.||+|||     +.+.....+..+..+..
T Consensus        24 ~~~~~~~~~~~~~~~~~~~~~-~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r-----~~~~~~~~~~~~~~~~~   97 (406)
T PRK11551         24 ALLEGLDLQSAGVAAPRMAQE-FGLDVAQMGWAFSAGILGLLPGALLGGRLADRIGRK-----RILIVSVALFGLFSLAT   97 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc-----hhHHHHHHHHHHHHHHH
Confidence            344444455555666766555 66665544 445677788899999999999999999     67666665555555555


Q ss_pred             HhhhhhHHHHHHHHHHHHHHHhccCchhhhhhcccCCchhhHHHHHHHHHHHhhcccCcchhHHHhhhccccchhhhHHH
Q 014628          292 FCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLAL  371 (421)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~  371 (421)
                      ...++.+...+..++.+++.+...+....++.|.+|+++|++++++.+..... |..+++.+.+.+.+..+ |+..+++.
T Consensus        98 ~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~-~~~~~~~~  175 (406)
T PRK11551         98 AQAWDFPSLLVARLLTGVGLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVPF-GGALASVIGVLAAGDAA-WRHIFYVG  175 (406)
T ss_pred             HHhccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHccccC-HHHHHHHH
Confidence            55667777777777888888777778888999999999999999999766555 88888877777766544 66666665


Q ss_pred             HHHHH
Q 014628          372 TSIFF  376 (421)
Q Consensus       372 ~~~~~  376 (421)
                      +.+.+
T Consensus       176 ~~~~~  180 (406)
T PRK11551        176 GVGPL  180 (406)
T ss_pred             HHHHH
Confidence            54433

>PRK11043 putative transporter; Provisional

Probab=99.23  E-value=5.4e-10  Score=102.35  Aligned_cols=156  Identities=16%  Similarity=0.080  Sum_probs=107.8

Q ss_pred             HHHHHHHHHhhHH--HHHhhCCccchh-HHHhhhhHHHHHHhhhhhHHHhhhccccchhhHHHHHHHHHHHHHHHHHHhh
Q 014628          218 FVIGAYSYWGPKA--GYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCL  294 (421)
Q Consensus       218 ~~~~~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (421)
                      ..+.....+.|.+  ..+..+.++... ...++..++..++.++.|+++||++||     +.+..+..+..+..+.....
T Consensus        17 ~~~~~~~~~~p~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r-----~~~~~~~~~~~~~~~~~~~~   91 (401)
T PRK11043         17 LGFLATDMYLPAFKAIQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRK-----PVLLAGLSLFALGSLGMLWV   91 (401)
T ss_pred             HHHHHHHHHHhhHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCc-----HHHHHHHHHHHHHHHHHHHh
Confidence            3334444555544  445567765554 444677788899999999999999999     77766666666555555555


Q ss_pred             hhhHHHHHHHHHHHHHHHhccCchhhhhhcccCCchhhHHHHHHHHHHHhhcccCcchhHHHhhhccccchhhhHHHHHH
Q 014628          295 SSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSI  374 (421)
Q Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~  374 (421)
                      ++.+...+...+.+.+.+...+.......+.+++++++...+..+..... +..++|.+.+++.+..+ |+..++..+..
T Consensus        92 ~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~i~~~l~~~~g-~~~~~~~~~~~  169 (401)
T PRK11043         92 ESAAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQKANRVFATIMPLVAL-SPALAPLLGAWLLNHFG-WQAIFATLFAI  169 (401)
T ss_pred             cCHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhcCC-hHHHHHHHHHH
Confidence            66666666666666665555555567788889888888888887655554 77889999999988765 77777766555


Q ss_pred             HHHHHH
Q 014628          375 FFLAAG  380 (421)
Q Consensus       375 ~~~~~~  380 (421)
                      .++..+
T Consensus       170 ~~~~~~  175 (401)
T PRK11043        170 TLLLIL  175 (401)
T ss_pred             HHHHHH
Confidence            444433

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=99.23  E-value=6.7e-10  Score=103.26  Aligned_cols=174  Identities=13%  Similarity=0.042  Sum_probs=126.2

Q ss_pred             hhcchhHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhCCccchhHHHhhhhHHHHHHhhhhhHHHhhhccccchhhHHHHH
Q 014628          200 LLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSA  279 (421)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~  279 (421)
                      .+|+|.|..+.++..+.+.+......-.+-+..+..+.+...........+..++.++++|.++||++||     ++++.
T Consensus         6 plr~~~Fr~lw~a~~iS~lG~~~~~va~~wlv~~lt~S~~~valv~~a~~LP~~Llsl~aG~laDr~drr-----rili~   80 (524)
T PF05977_consen    6 PLRNRNFRRLWIAQLISNLGDWMQTVALAWLVTQLTGSPLMVALVQAASTLPILLLSLFAGALADRFDRR-----RILIL   80 (524)
T ss_pred             cccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccch-----HHHHH
Confidence            4688999998888888888777776666666665543332222334555677788899999999999999     66665


Q ss_pred             HHHHHHHHHHHH-----HhhhhhHHHHHHHHHHHHHHHhccCchhhhhhcccCCchhhHHHHHHHHHHHhhcccCcchhH
Q 014628          280 ATFLGAISCLTA-----FCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLV  354 (421)
Q Consensus       280 ~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~  354 (421)
                      +-++..+....+     ....+.+.++++.++.+.+.....|...+.+.+.+|+++...++++.+...+. ..++||.++
T Consensus        81 ~~~~~~~~~~~L~~l~~~~~~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~L~~A~al~s~~~ni-ar~iGPalg  159 (524)
T PF05977_consen   81 SQLLRALVALLLAVLAFFGLLSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKEDLPAANALNSISFNI-ARIIGPALG  159 (524)
T ss_pred             HHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHH-HHhccchHH
Confidence            554443322211     12235667777788888888888899999999999999999999999777777 889999999


Q ss_pred             HHhhhccccchhhhHHHHHHHHHHHH
Q 014628          355 GVLQDHVNNWRKTTLALTSIFFLAAG  380 (421)
Q Consensus       355 g~l~~~~g~~~~~~~~~~~~~~~~~~  380 (421)
                      |.+....| ....|.+-++..++...
T Consensus       160 G~Lva~~G-~~~~f~inalsfl~~i~  184 (524)
T PF05977_consen  160 GILVAFFG-AAAAFLINALSFLISIL  184 (524)
T ss_pred             HHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence            99998877 44566665555444433

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.23  E-value=1.7e-11  Score=113.62  Aligned_cols=123  Identities=15%  Similarity=0.174  Sum_probs=100.3

Q ss_pred             cccchhhHHHHhhhhc--CCchHHH--HHHHHHHHHHhhhhhhhhHHHHHHHHHHhhhhhhhhccchhhhhhccCCCCCc
Q 014628            3 GLLVASPIFASLAKSH--NPFRLIG--VGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQK   78 (421)
Q Consensus         3 g~~i~~~~~g~l~Dr~--Grr~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r   78 (421)
                      +.++++++.|+++||.  ++|+...  .+.++.+++.++..++++++.+++.+++.|++.+...+...+++.|.+|++++
T Consensus       288 ~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~i~~~~~G~~~g~~~~~~~~~~~~~~~~~~~  367 (455)
T TIGR00892       288 VDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLCALAGDYTGLVIYCIFFGLSFGSVGALLFEVLMDLVGAQRF  367 (455)
T ss_pred             HHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhchHHHHHHHHHHHHhhHHHH
Confidence            3456778889999984  3443333  33444455556667788999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHhhhHHHhHHhhhhcc-hhHHHHHHHHHHHHHHHH
Q 014628           79 TAWLSMFYMCIPTGVALGYVYGGVVGSHL-NWRYAFWGEAILMLPFAV  125 (421)
Q Consensus        79 ~~~~~~~~~~~~~G~~~g~~~~~~l~~~~-~wr~~f~~~~~~~~~~~~  125 (421)
                      ++.+++++....+|..+||.+++.+.+.. +|++.|++.+++.++..+
T Consensus       368 g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~f~~~~~~~li~~~  415 (455)
T TIGR00892       368 SSAVGLVTIVECCAVLIGPPLAGRLVDATKNYKYIFYASGSIVVSAGL  415 (455)
T ss_pred             hhHHhHHHHHHHHHHHccccceeeeehhcCCcchHHHHhhHHHHHHHH
Confidence            99999999999999999999999999877 599999999887655444

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=99.22  E-value=8.2e-11  Score=102.94  Aligned_cols=154  Identities=11%  Similarity=0.116  Sum_probs=125.3

Q ss_pred             HHhhCCccchh-HHHhhhhHHHHHHhhhhhHHHhhhccccchhhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Q 014628          232 YNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELL  310 (421)
Q Consensus       232 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  310 (421)
                      ++.++.+.... .+.....+...+++++.|++.||++|+     .++..+..+-....+...+....|.+.+.=.+.|.+
T Consensus        60 ~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~-----~v~~vG~~iW~~Av~~~~fs~~Fwq~~l~R~~vGiG  134 (493)
T KOG1330|consen   60 QTYFNISDSELGLLQTVFIVVFMIASPLFGYLADRYNRK-----RVIAVGIFIWTLAVFASGFSNHFWQVLLCRGFVGIG  134 (493)
T ss_pred             HHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhcCcc-----eEEeeHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            33455554443 556778888999999999999999999     677666666666666666667888888888899999


Q ss_pred             HHhccCchhhhhhcccCCchhhHHHHHHHHHHHhhcccCcchhHHHhhhccccchhhhHHHHHHHHHHHHHHHHhhhhcc
Q 014628          311 VFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFFLAAGIWFVGIFLKS  390 (421)
Q Consensus       311 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  390 (421)
                      .....+..+++++|.+|.++|+++.++.+..... |..+|-+....+.+..+.|++++...+++.++..++.+.....|+
T Consensus       135 eAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipv-GsglG~vvgs~va~~~~~Wr~af~~~avl~vi~~~L~~~f~~eP~  213 (493)
T KOG1330|consen  135 EASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPV-GSGLGYVVGSVVASLTFWWRWAFRGSAVLGVIVGLLVFLFVREPE  213 (493)
T ss_pred             hhhhcccchhHhhhcCcchhhhHHHHHhhhhccc-ccceeEEeeeeeccCccceEEEEEeehHHHHHHHHHHHhhccCcc
Confidence            9999999999999999999999999999888777 888888888888888888999999999888877777665554454


Q ss_pred             c
Q 014628          391 I  391 (421)
Q Consensus       391 ~  391 (421)
                      |
T Consensus       214 r  214 (493)
T KOG1330|consen  214 R  214 (493)
T ss_pred             c
Confidence            4

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=99.22  E-value=9.6e-10  Score=102.15  Aligned_cols=147  Identities=14%  Similarity=0.097  Sum_probs=97.2

Q ss_pred             HHHHhhHHHHHhhCCccchh-HHHhhhhHHHHHHhhhhhHHHhhhccccchhhHHHHHHHHHHHHHHHHHHhh----hhh
Q 014628          223 YSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCL----SSL  297 (421)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~  297 (421)
                      +....|.+ .+. +.+..+. ...+...++..++.++.|+++||+|+|     +.+..+.++..+..+.....    .+.
T Consensus        48 ~~~~~p~l-~~~-g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k-----~~l~~~~~~~~i~~~~~~~~~~~~~~~  120 (452)
T PRK11273         48 FALAMPYL-VEQ-GFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPR-----VFLPAGLILAAAVMLFMGFVPWATSSI  120 (452)
T ss_pred             HHHhhHHH-HHc-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCc-----hhHHHHHHHHHHHHHHHHhhhcccccH
Confidence            44556654 454 6665555 344677788899999999999999999     67766666555555444332    244


Q ss_pred             HHHHHHHHHHHHHHHhccCchhhhhhcccCCchhhHHHHHHHHHHHhhcc-cCcchhHHHhhhccccchhhhHHHHHHHH
Q 014628          298 YGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGD-VPSSPLVGVLQDHVNNWRKTTLALTSIFF  376 (421)
Q Consensus       298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~-~~~~~~~g~l~~~~g~~~~~~~~~~~~~~  376 (421)
                      +..++...+.+++.+...++....+.+.+|+++|++++|+.+..... |. ..+|.+...+.. ..+|+..+++.+...+
T Consensus       121 ~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~-g~~~~~~l~~~~~~~-~~gw~~~f~i~~~~~~  198 (452)
T PRK11273        121 AVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNV-GGGLPPLLFLLGMAW-FNDWHAALYMPAFAAI  198 (452)
T ss_pred             HHHHHHHHHHHHHHhccchHHHHHHHHhCChHHHHHHHHHHHHHHHh-hhhHHHHHHHHHHHH-hccHHHHHHHHHHHHH
Confidence            45555566677777777777777888889999999999998766666 54 445543322322 2357777777665544


Q ss_pred             HH
Q 014628          377 LA  378 (421)
Q Consensus       377 ~~  378 (421)
                      +.
T Consensus       199 ~~  200 (452)
T PRK11273        199 LV  200 (452)
T ss_pred             HH
Confidence            43

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.22  E-value=9.9e-11  Score=106.24  Aligned_cols=123  Identities=11%  Similarity=0.186  Sum_probs=104.9

Q ss_pred             cchhhHHHHhhhhcCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhhhhhhhccchhhhhhccCCCCCchhHHHH
Q 014628            5 LVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSM   84 (421)
Q Consensus         5 ~i~~~~~g~l~Dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~   84 (421)
                      .++.++.|++.||+|||+++.++.++..+..+...+.++.+.+.+.+++.|++.+...+....++.|..|++ +++++++
T Consensus       249 ~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~-~~~~~~~  327 (375)
T TIGR00899       249 IPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGLAADNSLWALLMLQLLNAIFIGILAGIGMLYFQDLMPGR-AGAATTL  327 (375)
T ss_pred             HHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcch-hhHHHHH
Confidence            345678899999999999998888777666666667788888888999999999988888888999988764 6799999


Q ss_pred             HHHHHHHHhhhHHHhHHhhhhcchhHHHHHHHHHHHHHHHHHHH
Q 014628           85 FYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAF  128 (421)
Q Consensus        85 ~~~~~~~G~~~g~~~~~~l~~~~~wr~~f~~~~~~~~~~~~~~~  128 (421)
                      ++....+|..++|.+++.+.+..||+..|++.++..++..++..
T Consensus       328 ~~~~~~~g~~~g~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~  371 (375)
T TIGR00899       328 YTNTGRVGWIIAGSVGGILAERWSYHAVYWFAIVMLIVALFCLL  371 (375)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999887766665544

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.21  E-value=6.3e-10  Score=104.98  Aligned_cols=158  Identities=12%  Similarity=0.131  Sum_probs=116.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhCCccchh-HHHhhhhHHHHHHhhhhhHHHhhhccccchhhHHHHHHHHH
Q 014628          205 VYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFL  283 (421)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~  283 (421)
                      .+....+..+.............|.+. +.++.++... ...+...++..++.++.|++.||+|||     +.+..+.++
T Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r-----~~~~~~~~~   94 (496)
T PRK03893         21 AFSAAWLGYLLDGFDFVLITLVLTEVQ-GEFGLTTVQAASLISAAFISRWFGGLLLGAMGDRYGRR-----LAMVISIVL   94 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcH-----HHHHHHHHH
Confidence            334444444444555555555666554 5577775444 445667788889999999999999998     777777666


Q ss_pred             HHHHHHHHHhhhhhHHHHHHHHHHHHHHHhccCchhhhhhcccCCchhhHHHHHHHHHHHhhcccCcchhHHHhhhcccc
Q 014628          284 GAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNN  363 (421)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~g~  363 (421)
                      ..+..+.....++.+...+..++.+++.+...+....++.+.+|+++|+++.++.+..... |..++|.+.+.+.+..+ 
T Consensus        95 ~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~-g~~~~~~~~~~l~~~~~-  172 (496)
T PRK03893         95 FSVGTLACGFAPGYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSI-GAVVAAQVYSLVVPVWG-  172 (496)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhccCC-
Confidence            6666666666667777777777888887777788888999999999999999999655555 88999999999888755 


Q ss_pred             chhhhHH
Q 014628          364 WRKTTLA  370 (421)
Q Consensus       364 ~~~~~~~  370 (421)
                      |+..+.+
T Consensus       173 w~~~f~~  179 (496)
T PRK03893        173 WRALFFI  179 (496)
T ss_pred             HHHHHHH
Confidence            6666554

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=99.20  E-value=7.1e-11  Score=110.89  Aligned_cols=132  Identities=8%  Similarity=-0.073  Sum_probs=103.2

Q ss_pred             cccchhhHHHHhhhhcCCchHHHHHHHHHHHHHhhhhh-----hh------hHHHHHHHHHHhhhhhhhhccchhhhhhc
Q 014628            3 GLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGS-----SF------DFWSIAICRMLVGVGEASFISLAAPFIDD   71 (421)
Q Consensus         3 g~~i~~~~~g~l~Dr~Grr~~~~~~~~~~~~~~~~~~~-----~~------~~~~l~~~r~l~G~~~~~~~~~~~~~i~~   71 (421)
                      +..++.++.|+++||+|||+.+..+.++..++.++.++     .+      +...+....++.+.......+....++.|
T Consensus       331 ~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  410 (481)
T TIGR00879       331 VNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGASFVTGSSKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSE  410 (481)
T ss_pred             HHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhcccCCcccchhHHHHHHHHHHHHHHHccccCeehhhhhc
Confidence            45678899999999999999999998888777776652     11      23333333333333333345667778899


Q ss_pred             cCCCCCchhHHHHHHHHHHHHhhhHHHhHHhhhhcchhHHHHHHHHHHHHHHHHHHHhccccc
Q 014628           72 NAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQ  134 (421)
Q Consensus        72 ~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p~~  134 (421)
                      .+|+++|++++++......+|.+++|.+.+.+.++.+|++.|++.++++++..++.+++.||.
T Consensus       411 ~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~~~~~~  473 (481)
T TIGR00879       411 IFPLSLRPKGISIAVAANWLANFIVGFLFPTMLESIGVGGVFIFFGGLNVLGLIFVYFFLPET  473 (481)
T ss_pred             cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccceehhHHHHHHHHHHHHheecccC
Confidence            999999999999999999999999999999999988999999999988888877777766653

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=99.20  E-value=1.5e-09  Score=101.24  Aligned_cols=153  Identities=14%  Similarity=0.095  Sum_probs=98.0

Q ss_pred             HHHHHHhhHHHHHhhCCccchhH-HHhhhhHHHHHHhhhhhHHHhhhccccchhhHHHHHHHHHHHHHHHHHHhhhhhHH
Q 014628          221 GAYSYWGPKAGYNIYHMSNADMM-FGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYG  299 (421)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (421)
                      +....+.|.+ .+.++.+..+.. ..+...++..++.++.|+++||+|+|     +.+..+.++..+..++....++.+.
T Consensus        53 ~~~~~~~~~l-~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r-----~~~~~~~~~~~~~~~~~~~~~s~~~  126 (476)
T PLN00028         53 FAAAPLLPII-RDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPR-----YGSAFLLMLTAPAVFCMSLVSSATG  126 (476)
T ss_pred             HHHHHHHHHH-HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCh-----HHHHHHHHHHHHHHHHHHHhcCHHH
Confidence            3344444544 455777755543 34556677888999999999999998     6666666555555555555556665


Q ss_pred             HHHHHHHHHHHHHhccCchhhhhhcccCCchhhHHHHHHHHHHHhhcccCcchhHHHhhh----c----cccchhhhHHH
Q 014628          300 FLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQD----H----VNNWRKTTLAL  371 (421)
Q Consensus       300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~----~----~g~~~~~~~~~  371 (421)
                      ..+..++.+++.+.. .+...++.+.+|+++|++++|+.+...+. |..+++.+.+.+.+    .    ..+|+..|++.
T Consensus       127 l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~~rg~a~g~~~~~~~~-g~~~~~~~~~~i~~~~~~~~~~~~~gWr~~f~i~  204 (476)
T PLN00028        127 FIAVRFFIGFSLATF-VSCQYWMSTMFNGKIVGTANGIAAGWGNL-GGGVTQLLMPLVFPLIKDAGAPSFTAWRIAFFVP  204 (476)
T ss_pred             HHHHHHHHHHHHHhh-HHHHHHHHHhcChhheeHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHH
Confidence            555555566555543 34455678889999999999998655454 66666555554432    1    12477888877


Q ss_pred             HHHHHHHHHH
Q 014628          372 TSIFFLAAGI  381 (421)
Q Consensus       372 ~~~~~~~~~~  381 (421)
                      +++.++..+.
T Consensus       205 g~l~l~~~l~  214 (476)
T PLN00028        205 GLLHIIMGIL  214 (476)
T ss_pred             HHHHHHHHHH
Confidence            6665544433

>TIGR00897 2A0118 polyol permease family

Probab=99.19  E-value=7.8e-10  Score=101.18  Aligned_cols=153  Identities=10%  Similarity=-0.024  Sum_probs=105.1

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhCCccchh-HHHhhhhHHHHHHhhhhhHHHhhhccccchhhHHHHHHH
Q 014628          203 EKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAAT  281 (421)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~  281 (421)
                      ++.+....+..++..........++|.+.++ .+.++.+. ...+...++..++.++.|++.||+|||     +.+..+.
T Consensus        12 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~g~k-----~~l~~~~   85 (402)
T TIGR00897        12 PLNLLWGYIGVVVFMTGDGLEQGWLSPFLKA-LGLSPQQSASAFTLYGIAAAISAWISGVVAEIIGPL-----KTMMIGL   85 (402)
T ss_pred             CchhhHHHHHHHHHHHhhhhHHHhHHHHHHH-hCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCcH-----HHHHHHH
Confidence            4555566666666666666666778888866 56665444 444677788899999999999999998     6666655


Q ss_pred             HHHHHHHHHHH---h-hhhhHHHHHHHHHHHHHHHhccCchhhhhhcccCCchhhHHHHHHHHHHHhhcc-cCcchhHHH
Q 014628          282 FLGAISCLTAF---C-LSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGD-VPSSPLVGV  356 (421)
Q Consensus       282 ~~~~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~-~~~~~~~g~  356 (421)
                      .+.....+...   . ..+.+...+...+.+.+.+...+.....+.+..|+++|++++|+.+...+. |. ..+|.+.++
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~G~g~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~-g~~~~g~~~~~~  164 (402)
T TIGR00897        86 LLWCVGHAAFIVFGLGHANYPLILLFYGIRGLGYPLFAYSFLVWVVYNTKQDNLSSAVGWFWAVYSI-GIGVFGSYYSSY  164 (402)
T ss_pred             HHHHHHHHHHHHHhccCccHHHHHHHHHHHHcchHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHh
Confidence            55544433221   1 234444455555556655555555666777888999999999999766655 64 568888888


Q ss_pred             hhhccc
Q 014628          357 LQDHVN  362 (421)
Q Consensus       357 l~~~~g  362 (421)
                      +.+..|
T Consensus       165 l~~~~g  170 (402)
T TIGR00897       165 AIPAFG  170 (402)
T ss_pred             cccccc
Confidence            888766

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=99.19  E-value=2.8e-10  Score=103.39  Aligned_cols=150  Identities=16%  Similarity=0.150  Sum_probs=112.4

Q ss_pred             HHHHHhhHHHHHhhCCccchh-HHHhhhhHHHHHHhhhhhHHHhhhccccchhhHHHHHHHHHHHHHHHHHHhhhhhHHH
Q 014628          222 AYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGF  300 (421)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (421)
                      .....+|.+.++ ++.++.+. ...+...++..++.++.|++.||+|||     +.+..+..+..+........++.+..
T Consensus         9 ~~~p~~~~~~~~-~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~-----~~~~~~~~~~~i~~~~~~~~~~~~~~   82 (377)
T PRK11102          9 MYLPALPVIAAD-FGVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRK-----PVILGGTLVFALAAVACALAQTIDQL   82 (377)
T ss_pred             HHhccHHHHHHH-hCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCCh-----HHHHHHHHHHHHHHHHHHHHccHHHH
Confidence            344556666665 56665444 444677788899999999999999998     77777776666666666666677777


Q ss_pred             HHHHHHHHHHHHhccCchhhhhhcccCCchhhHHHHHHHHHHHhhcccCcchhHHHhhhccccchhhhHHHHHHHHHHH
Q 014628          301 LALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFFLAA  379 (421)
Q Consensus       301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~  379 (421)
                      .+..++.+++.+...+....++.+..|+++|+++.++.+..... |..++|.+.+.+.+..+ |+..+...+...++..
T Consensus        83 ~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~  159 (377)
T PRK11102         83 IYMRFLHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTI-APLLAPIIGGWLLVWFS-WHAIFWVLALAAILAA  159 (377)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHcC-hHHHHHHHHHHHHHHH
Confidence            77777777777777777888899999999999999999766555 88999999999988765 6666666555544433

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.19  E-value=5e-10  Score=101.60  Aligned_cols=153  Identities=13%  Similarity=0.154  Sum_probs=106.2

Q ss_pred             HHHHHHHhhHHHHHhhCCccchh-HHHhhhhHHHHHHhhhhhHHHhhhccccchhhHHHHHHHHHHHHHHHHHHhhhhhH
Q 014628          220 IGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLY  298 (421)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (421)
                      .+....+.|.+. +.++.+..+. ...+...++..++.+..|+++||+|||     +.+..+..+..+..+.....++.+
T Consensus        19 ~~~~~~~~~~~~-~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~G~r-----~~~~~~~~~~~~~~~~~~~~~~~~   92 (377)
T TIGR00890        19 VYTWTLLAPPLG-RYFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKFGPR-----AVAMLGGILYGLGFTFYAIADSLA   92 (377)
T ss_pred             HhhhhhHHHHHH-HHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHcCcc-----chhHHhHHHHHHHHHHHHHHHHHH
Confidence            444555566554 4467775554 445777889999999999999999999     777666666666666666677777


Q ss_pred             HHHHHHHHHHHHHHhccCchhhhhhcccCCchhhHHHHHHHHHHHhhcccCcchhHHHhhhccccchhhhHHHHHHHHHH
Q 014628          299 GFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFFLA  378 (421)
Q Consensus       299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~  378 (421)
                      .+.+...+.+++.+..++.......+..| ++|+++.++.+..... |..+++++.+.+.+..+ |+..+...+...++.
T Consensus        93 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~-~~~~f~~~~~~~~~~  169 (377)
T TIGR00890        93 ALYLTYGLASAGVGIAYGIALNTAVKWFP-DKRGLASGIIIGGYGL-GSFILSPLITSVINLEG-VPAAFIYMGIIFLLV  169 (377)
T ss_pred             HHHHHHHHHhHHHHHHHHhHHHHHHHHcC-cccHHHHHHHHHhcch-hHhHHHHHHHHHHhccc-HHHHHHHHHHHHHHH
Confidence            77777777777777666666666666664 6799999998655454 76666667777766544 777777766655444


Q ss_pred             HHH
Q 014628          379 AGI  381 (421)
Q Consensus       379 ~~~  381 (421)
                      .+.
T Consensus       170 ~~~  172 (377)
T TIGR00890       170 IVL  172 (377)
T ss_pred             HHH
Confidence            433

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=99.18  E-value=1.1e-09  Score=99.37  Aligned_cols=147  Identities=10%  Similarity=0.030  Sum_probs=100.5

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhCCccchhH-HHhhhhHHHHHHhhhhhHHHhhhccccchhhHHHHHHH
Q 014628          203 EKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADMM-FGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAAT  281 (421)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~  281 (421)
                      +|.++...+.........+......+.+-++.++.+..+.. +.+++.+...+.++..|++.||+|.|     +....+.
T Consensus        33 ~r~l~~s~~~f~~~F~~w~~~~~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R-----~v~~~~~  107 (462)
T PRK15034         33 RRNLWISVSCLLLAFCVWMLFSAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIFGGR-----RWTVFST  107 (462)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCh-----HHHHHHH
Confidence            45566655555444444555555555555546888876664 45777888888889999999999998     7776666


Q ss_pred             HHHHHHHHHHHhh-----hhhHHHHHHHHHHHHHHHhccCchhhhhhcccCCchhhHHHHHHHHHHHhhcccCcchhHHH
Q 014628          282 FLGAISCLTAFCL-----SSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGV  356 (421)
Q Consensus       282 ~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~  356 (421)
                      ++..+..+.....     ++.+.+++.-++.+++ +..+++....+.+.+|+++||++.|+.....+. |..+++.+.+.
T Consensus       108 ll~~i~~~~~~~a~~~~~~s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~-G~~l~~~l~p~  185 (462)
T PRK15034        108 AILIIPCVWLGIAVQNPNTPFGIFIVIALLCGFA-GANFASSMGNISFFFPKAKQGSALGINGGLGNL-GVSVMQLVAPL  185 (462)
T ss_pred             HHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhh-HHHHHHHHHHH
Confidence            6666655555443     5666666666777765 557777888888999999999999998533333 66555544444

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.17  E-value=9.8e-10  Score=99.82  Aligned_cols=151  Identities=15%  Similarity=0.183  Sum_probs=115.8

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhCCccchh-HHHhhhhHHHHHHhhhhhHHHhhhccccchhhHHHHHHH
Q 014628          203 EKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAAT  281 (421)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~  281 (421)
                      ++.++.+.+..++..........++|.+.++ .+.+..+. ...+...++..++.++.|+++||+|||     +.+..+.
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~-~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~g~k-----~~~~~~~   78 (381)
T PRK03633          5 TRPVLLLLCGLLLLTLAIAVLNTLVPLWLAQ-EHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRIGFN-----RSYYLAS   78 (381)
T ss_pred             HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH-----HHHHHHH
Confidence            3446666777777777788888899999886 46665444 445777788899999999999999998     7776666


Q ss_pred             HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhccCchhhhhhcccCCchhhHHHHHHHHHHHhhcccCcchhHHHhhhc
Q 014628          282 FLGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDH  360 (421)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~  360 (421)
                      ++...........++.+.+.+..++.+++.+...+.....+.+..++++|+++.+..+...+. |..++|.+.+.+.+.
T Consensus        79 ~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~g~~~~~~l~~~  156 (381)
T PRK03633         79 LIFAAGCAGLGLMVGFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYL-GTVLGQLLVSKVSTE  156 (381)
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH-HHHHHHHHHhccccc
Confidence            666666665556677777777777777777777666666777888889999999998665555 889999888888765

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=99.17  E-value=2.2e-10  Score=97.53  Aligned_cols=141  Identities=16%  Similarity=0.179  Sum_probs=101.4

Q ss_pred             HHHhhhhHHHHHHhhhhhHHHhhhccccchhhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhccCchhhhh
Q 014628          243 MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVC  322 (421)
Q Consensus       243 ~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (421)
                      .+++.+.++..+.++..|.++||+|||     ..+..+.+...+..++.....+...+++.=++. ....+..+...+++
T Consensus        72 flGSsF~ilQ~~sS~~~G~~SD~yGRk-----pvll~c~~~va~s~ll~~~S~~F~afv~aR~l~-Gi~kgnl~v~rAii  145 (451)
T KOG2615|consen   72 FLGSSFSILQFISSPLWGCLSDRYGRK-----PVLLACLIGVALSYLLWALSRNFAAFVLARFLG-GIFKGNLSVIRAII  145 (451)
T ss_pred             hHhhHHHHHHHHhhhhhhhhhhhhCch-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhccCchHHHHHHH
Confidence            455778899999999999999999999     888888877777777666666763333323333 33445667789999


Q ss_pred             hcccCCchhhHHHHHHHHHHHhhcccCcchhHHHhhh---ccccchhhhHHHHHHHHHHHHHHHHhhhhcc
Q 014628          323 LHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQD---HVNNWRKTTLALTSIFFLAAGIWFVGIFLKS  390 (421)
Q Consensus       323 ~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~---~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  390 (421)
                      .|.+++++|+.+++..+...+. |.++||.++|++..   ..|.|...+-...++.....-++++..+++|
T Consensus       146 sdV~sek~r~l~ms~v~~a~~l-GfilGPmIGgyla~f~~~~g~~p~alP~~~v~i~a~~~v~~~~~~lpE  215 (451)
T KOG2615|consen  146 SDVVSEKYRPLGMSLVGTAFGL-GFILGPMIGGYLAQFSSISGSYPFALPCLLVFILAAGDVTFFPWFLPE  215 (451)
T ss_pred             HhhcChhhccceeeeeehhhhc-chhhcchhhhHHHhhHhhhccCchHHHHHHHHHHHHHHHHHHHHhCCc
Confidence            9999999999999999777776 99999999999987   5666644443333333333323333334554

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.17  E-value=2.1e-10  Score=104.09  Aligned_cols=122  Identities=15%  Similarity=0.048  Sum_probs=108.3

Q ss_pred             cccchhhHHHHhhhhcCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhhhhhhhccchhhhhhccCCCCCchhHH
Q 014628            3 GLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWL   82 (421)
Q Consensus         3 g~~i~~~~~g~l~Dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~   82 (421)
                      +.+++.++.+++.||+|+|+.+.++.++..+..++.+++++.+.+++.++++|++.+...+....++.+. |+++|++..
T Consensus       252 ~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~~~~~q  330 (382)
T TIGR00902       252 AEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAIIGAIEAFPLIFLLQILHCGTFAVCHLAAMRYIAAQ-PGSEIAKLQ  330 (382)
T ss_pred             HHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHhhHHHHH
Confidence            3456778899999999999999999999999999999999999999999999999999999999999998 998999999


Q ss_pred             HHHH-HHHHHHhhhHHHhHHhhhhcchhHHHHHHHHHHHHHHHHH
Q 014628           83 SMFY-MCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVL  126 (421)
Q Consensus        83 ~~~~-~~~~~G~~~g~~~~~~l~~~~~wr~~f~~~~~~~~~~~~~  126 (421)
                      ++++ ...++|.++|+.++|.+.+++|+ ..|++.+++.++..++
T Consensus       331 ~~~~~~~~g~g~~~g~~~~G~l~~~~g~-~~~~~~~~~~~~~~~~  374 (382)
T TIGR00902       331 ALYNALAMGGLIAIFTAFAGFIYPTLGA-GTFVFMAIIAAAAFFL  374 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHHHH
Confidence            9986 57789999999999999999986 6677777776654433

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=99.17  E-value=1.4e-09  Score=99.29  Aligned_cols=151  Identities=11%  Similarity=0.034  Sum_probs=103.8

Q ss_pred             HHHHHHHHhhHHHHHhhCCccchh-HHHhhhhHHHHHHhhhhhHHHhhhccccchhhHHHHHHHHHHHHHHHHHHhhhhh
Q 014628          219 VIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSL  297 (421)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (421)
                      ........+|.+. +..+.++... ...+...++..++.++.|+++||+|||     +.+........+..+.....++.
T Consensus        23 ~~~~~~p~~~~i~-~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr-----~~~~~~~~~~~~~~~~~~~~~~~   96 (394)
T PRK11652         23 AQTIYVPAIADMA-RDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRR-----PVILVGMSIFILGTLVALFAHSL   96 (394)
T ss_pred             HHHHHhccHHHHH-HHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCCh-----HHHHHHHHHHHHHHHHHHHHccH
Confidence            3333334455555 4466665444 444677788899999999999999998     76666666555555555555666


Q ss_pred             HHHHHHHHHHHHHHHhccCchhhhhhcccCCchhhHHHHHHHHHHHhhcccCcchhHHHhhhccccchhhhHHHHHHHHH
Q 014628          298 YGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFFL  377 (421)
Q Consensus       298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~  377 (421)
                      +...+...+.+++.+...+.......+.+++++++.+.+..+..... +..++|.+.+.+.+..+ |+..+.+.+...++
T Consensus        97 ~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~i~~~l~~~~g-~~~~f~~~~~~~~~  174 (394)
T PRK11652         97 TVLIAASAIQGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILV-SPLLAPLIGGLLTTLFG-WRACYLFLLLLGAG  174 (394)
T ss_pred             HHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhccC-hHHHHHHHHHHHHH
Confidence            66666666666666555555566677778888899999998655544 88889999999888755 77777766554433

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=99.15  E-value=1.3e-09  Score=97.83  Aligned_cols=153  Identities=10%  Similarity=-0.030  Sum_probs=104.3

Q ss_pred             HHHHHHHHhhHHHHHhhCCccchh-HHHhhhhHHHHHHhhhhhHHHhhhccccchhhHHHHHHHHHHHHHHHHHHhhhhh
Q 014628          219 VIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSL  297 (421)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (421)
                      ....+...+|.+.++ ++.+..+. ...+...++..++.+..|+++||+|||     +.+.................++.
T Consensus         6 ~~~~~~~~lp~i~~~-~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr-----~~~~~~~~~~~~~~~~~~~~~~~   79 (368)
T TIGR00903         6 IWVTFSPVLSLVAED-IDVSKEELGLLAITYPAAFLALTIPSGLLLDRAFKR-----WFLFGSLATFAAAAGRLLDPFNY   79 (368)
T ss_pred             HHHHHHhhHHHHHHH-hCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccch-----HHHHHHHHHHHHHHHHHHHhccH
Confidence            344455566666554 67776555 445667788899999999999999987     55544443333332222222456


Q ss_pred             HHHHHHHHHHHHHHHhccCchhhhhhcccCCchhhHHHHHHHHHHHhhcccCcchhHHHhhhccccchhhhHHHHHHHHH
Q 014628          298 YGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFFL  377 (421)
Q Consensus       298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~  377 (421)
                      +..++.-++.+.+.+. ..+......+.+|+++|++++++.+..... |..+++.+.+++.+..| |+..|+..+.+.++
T Consensus        80 ~~l~~~R~l~G~g~~~-~~~~~~~~~~~~~~~~r~~a~~~~~~~~~l-G~~l~~~~~~~l~~~~g-Wr~~f~~~~~l~~~  156 (368)
T TIGR00903        80 EWLLACQLLAALGQPF-LLNAFAPAASQIREERRDLVISLLSFAMYL-GIIFALAAGLKIYTAGG-LQLLIIPIAAVAAA  156 (368)
T ss_pred             HHHHHHHHHHHhHhHH-HHHHHHHHHHHcCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHccc-hHHHHHHHHHHHHH
Confidence            6666666677776664 344555668889999999999999655555 99999989898888765 88888776666544


Q ss_pred             HHH
Q 014628          378 AAG  380 (421)
Q Consensus       378 ~~~  380 (421)
                      ..+
T Consensus       157 ~~~  159 (368)
T TIGR00903       157 GII  159 (368)
T ss_pred             HHH
Confidence            443

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=99.14  E-value=1.8e-10  Score=108.22  Aligned_cols=131  Identities=9%  Similarity=0.019  Sum_probs=98.9

Q ss_pred             ccchhhHHHHhhhhcCCchHHHHHHHHHHHHHhhhhhhh--hH-H-HHHHHHHHhhhhhhh-hccchhhhhhccCCCCCc
Q 014628            4 LLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSF--DF-W-SIAICRMLVGVGEAS-FISLAAPFIDDNAPVPQK   78 (421)
Q Consensus         4 ~~i~~~~~g~l~Dr~Grr~~~~~~~~~~~~~~~~~~~~~--~~-~-~l~~~r~l~G~~~~~-~~~~~~~~i~~~~~~~~r   78 (421)
                      .+++.++.|+++||+|||++++.+.++.+++.++.+...  +. + ....+-++.+.+.+. ..|....++.|.+|+++|
T Consensus       319 ~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r  398 (479)
T PRK10077        319 NLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIR  398 (479)
T ss_pred             HHHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhccccchhHHHhHhhCChhHH
Confidence            457789999999999999999999999888887765432  11 1 222334444444443 336678999999999999


Q ss_pred             hhHHHHHHHHHHHHhhhHHHhHHh------hhhcchhHHHHHHHHHHHHHHHHHHHhccccc
Q 014628           79 TAWLSMFYMCIPTGVALGYVYGGV------VGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQ  134 (421)
Q Consensus        79 ~~~~~~~~~~~~~G~~~g~~~~~~------l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p~~  134 (421)
                      ++++++......+|..+++.+.+.      +.+..+|++.|++.++++++..++.+++.||+
T Consensus       399 ~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~  460 (479)
T PRK10077        399 GKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPET  460 (479)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhhccCccHHHHHHHHHHHHHHHHHhccccC
Confidence            999999999999999888665543      34578899999999888777777777666764

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=99.12  E-value=3e-09  Score=97.58  Aligned_cols=147  Identities=12%  Similarity=0.028  Sum_probs=104.0

Q ss_pred             HHhhHHHHHhhCCccchh-HHHhhhhHHHHHHhhhhhHHHhhhccccchhhHHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Q 014628          225 YWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLAL  303 (421)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (421)
                      ..+|.+. +.++.++... .......++..++.++.|+++||+|||     +.+..+.....+..+.....++.+..++.
T Consensus        34 ~~~~~~~-~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r-----~~l~~~~~~~~~~~~~~~~~~~~~~l~~~  107 (406)
T PRK15402         34 PGMLAVV-EDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRIGRR-----PVMLAGVAFFILTCLAILLAQSIEQFTLL  107 (406)
T ss_pred             cchHHHH-HHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCh-----HHHHHHHHHHHHHHHHHHHHccHHHHHHH
Confidence            3444444 4566665444 334667788889999999999999999     77766666666666555556666666666


Q ss_pred             HHHHHHHHHhccCchhhhhhcccCCchhhHHHHHHHHHHHhhcccCcchhHHHhhhccccchhhhHHHHHHHHHHH
Q 014628          304 FTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFFLAA  379 (421)
Q Consensus       304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~  379 (421)
                      ..+.+.+.+...+.....+.|.+|+++|.++.++....... +..++|.+.+.+.+..+ |+..+++.+.+.++..
T Consensus       108 ~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~i~~~l~~~~~-w~~~~~~~~~~~~~~~  181 (406)
T PRK15402        108 RFLQGIGLCFIGAVGYAAIQESFEEADAIKITALMANVALL-APLLGPLVGAALIHVLP-WRGMFVLFAALAALSF  181 (406)
T ss_pred             HHHHHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHccC-ccHHHHHHHHHHHHHH
Confidence            66666666655566677888889889999999888555444 77889989898888654 7777776666554443

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=99.12  E-value=2.7e-09  Score=97.28  Aligned_cols=146  Identities=14%  Similarity=0.089  Sum_probs=113.0

Q ss_pred             HHHHHHhhHHHHHhhCCccchh-HHHhhhhHHHHHHhhhhhHHHhhhccccchhhHHHHHHHHHHHHHHHHHHhhhhhHH
Q 014628          221 GAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYG  299 (421)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (421)
                      ......+|...+ .++.+..+. ...+...++..++.+..|++.||+|||     +.+..+..+..+..+.....++.+.
T Consensus        26 ~~~~~~lp~i~~-~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~G~r-----~~l~~~~~l~~~~~~~~~~a~~~~~   99 (393)
T PRK09705         26 TSVGPLLPQLRQ-ASGMSFSVAALLTALPVVTMGGLALAGSWLHQHVSER-----RSVAISLLLIAVGALMRELYPQSAL   99 (393)
T ss_pred             hccchhHHHHHH-HhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCch-----HHHHHHHHHHHHHHHHHHHCcchHH
Confidence            444556666554 467775554 445777788899999999999999999     8898888888888888888888888


Q ss_pred             HHHHHHHHHHHHHhccCchhhhhhcccCCchhhHHHHHHHHHHHhhcccCcchhHHHhhhccccchhhhHHHHHH
Q 014628          300 FLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSI  374 (421)
Q Consensus       300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~  374 (421)
                      +++.-++.+++.+...+....++.+.+| ++|+.++++.+..... |..+++.+.+++.++..+|+..+.+.+..
T Consensus       100 ll~~r~l~Gig~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~-g~~~g~~~~~~l~~~~~~w~~~~~~~~~~  172 (393)
T PRK09705        100 LLSSALLGGVGIGIIQAVMPSVIKRRFQ-QRTPLVMGLWSAALMG-GGGLGAAITPWLVQHSETWYQTLAWWALP  172 (393)
T ss_pred             HHHHHHHHHhHHHHHhhhhhHHHHHHcc-ccchhHHHHHHHHHHH-HHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence            8888888888888888777888888775 7899999998655555 77888888888888765576665554443

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=99.12  E-value=2.8e-09  Score=97.66  Aligned_cols=141  Identities=12%  Similarity=0.105  Sum_probs=102.6

Q ss_pred             HHhhCCccchh-HHHhhhhHHHHHHhhhhhHHHhhhccccchhhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Q 014628          232 YNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELL  310 (421)
Q Consensus       232 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  310 (421)
                      .+.++.+.... ...++..++..++.+..|+++||+|||     +.+..+..+..+..+.....++.+.+++.-++.+.+
T Consensus        43 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr-----~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~Gi~  117 (413)
T PRK15403         43 VRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRIGRR-----PVLITGALIFTLACAATLFTTSMTQFLIARFIQGTS  117 (413)
T ss_pred             HHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCch-----HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            34566665444 344667788899999999999999999     777766666666666666667777776666776666


Q ss_pred             HHhccCchhhhhhcccCCchhhHHHHHHHHHHHhhcccCcchhHHHhhhccccchhhhHHHHHHHHHHH
Q 014628          311 VFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFFLAA  379 (421)
Q Consensus       311 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~  379 (421)
                      .+...+.......|.+|++++++++++.+..... +..++|.+.+.+.+..+ |+..|++.+...++..
T Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~lg~~l~~~~g-w~~~f~~~~~~~~i~~  184 (413)
T PRK15403        118 ICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLV-APIIGPLSGAALMHFVH-WKVLFAIIAVMGLIAF  184 (413)
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHHHH
Confidence            6544444566777888888999999998666655 88889988888887654 8788877766544443

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=99.11  E-value=4.4e-07  Score=82.78  Aligned_cols=226  Identities=14%  Similarity=0.061  Sum_probs=134.4

Q ss_pred             hhhHHHHhhhhcCCchHHHHHHHHHHHHHhhhhhh----h---------------------------hHHHHHHHHHHhh
Q 014628            7 ASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSS----F---------------------------DFWSIAICRMLVG   55 (421)
Q Consensus         7 ~~~~~g~l~Dr~Grr~~~~~~~~~~~~~~~~~~~~----~---------------------------~~~~l~~~r~l~G   55 (421)
                      ..++.+++++|++|++++-+....+.....++++.    +                           +.|...+.-+...
T Consensus        60 ~~~ly~~l~~~~~~~~lf~~~~~~F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~~~i~~~~~W~~~~FYv~~e  139 (472)
T TIGR00769        60 FMLIYTKLSNILSKEALFYTVISPFLGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFMGFIAILRIWSFALFYVMAE  139 (472)
T ss_pred             HHHHHHHHHhcCCHHHhHHHHHHHHHHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhHHHHHHHhhhhHHHHHHHHH
Confidence            37889999999999999888877777766666554    1                           1222233334444


Q ss_pred             hhhhhhcc-chhhhhhccCCCCCchhHHHHHHHHHHHHhhhHHHhHHhhhh--------cchhH----HHHHHHHHHHHH
Q 014628           56 VGEASFIS-LAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGS--------HLNWR----YAFWGEAILMLP  122 (421)
Q Consensus        56 ~~~~~~~~-~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~--------~~~wr----~~f~~~~~~~~~  122 (421)
                      +-.....+ .-..+.+|.++.+|-.|..++...+.++|.++++.+..++.+        ...|.    ..+.+.++.+++
T Consensus       140 lw~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~  219 (472)
T TIGR00769       140 LWGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIKYFSKLRASLGPGVDGWHVSLKNLMVIVICSGLA  219 (472)
T ss_pred             HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccChHHHHHHHHHHHHHHHHHH
Confidence            44444444 667899999999999999999999999999999999888763        11342    333444433333


Q ss_pred             HHHHHHhcccccccccCCccccchhhhhhcccccccccCCcccccccchhhhhhhccccchhhhhhhhhhhhhhhHHhhc
Q 014628          123 FAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQ  202 (421)
Q Consensus       123 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (421)
                      ...+..++ .+....  +++..+ .                   +     +  +.+++       +...+..++++.+++
T Consensus       220 ~~~~~~~l-~~~~~~--~~~~~~-~-------------------~-----~--~~~k~-------k~k~~~~es~k~i~~  262 (472)
T TIGR00769       220 IILLYWWV-NRNVLT--DPRSYN-P-------------------A-----L--KEKKV-------KPKMSTMESLKFLVS  262 (472)
T ss_pred             HHHHHHHH-HhcccC--Cccccc-h-------------------h-----h--ccccC-------CCCCCHHHHHHHHHh
Confidence            33333322 111100  000000 0                   0     0  00000       112234578899999


Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhCCccchh-H---HHhhhhHHHHHHhhhhhHHHhhhccc
Q 014628          203 EKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-M---FGGVTIVCGIVGTISGGFILDQMGAT  269 (421)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~g~l~d~~~~~  269 (421)
                      +|.++.+.+...+++...+.+..-......+.+..+.+.. .   +....++..++..++.+++.+|+|-+
T Consensus       263 S~yL~~ia~~vi~y~~~~nlve~~~k~~v~~~~p~~~~~~~f~g~~~~~~gi~tl~~~l~~~~l~~~~Gw~  333 (472)
T TIGR00769       263 SPYILDLALLVIAYGISINLVEVTWKSKLKAQYPSPNEYSAFMGDFSTWTGVVSVTMMLLSGNVIRKYGWL  333 (472)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence            9999988887777777666665544445555553222111 1   22333444455566668888888876

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=99.11  E-value=2.4e-09  Score=97.83  Aligned_cols=168  Identities=13%  Similarity=0.000  Sum_probs=104.5

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhCCccchh-HHHhhhhHHHHHHhhhhhHHHhhhccccchhhHHHHHHH
Q 014628          203 EKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAAT  281 (421)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~  281 (421)
                      +|.+|.+....++.......+..++|.|+.+..+.++.+. ...+...+...++.+..|+++||+|||     +.+....
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~grr-----~~~~~~~   75 (396)
T TIGR00882         1 NTNFWMFGLFFFLYFFIMSAYFPFFPIWLHDVNGLSKTDTGIVFSCISLFSILFQPLFGLISDKLGLK-----KHLLWII   75 (396)
T ss_pred             ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcH-----HHHHHHH
Confidence            4778888888888888888888899999998888886555 445778899999999999999999998     5554333


Q ss_pred             HHHHHHHH---HHHhhh-----hhHHHHHHHHHHHHHHHhccCchhhhhhcccCCchhhHHHHHHHHHHHhhcccCcchh
Q 014628          282 FLGAISCL---TAFCLS-----SLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPL  353 (421)
Q Consensus       282 ~~~~~~~~---~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~  353 (421)
                      ........   .....+     ......+..++.+.+.+...+....+..+..  +.++...|......+ +|..++|.+
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~--~~~~~~~g~~~~~~~-~g~~~g~~~  152 (396)
T TIGR00882        76 SGLLVLFAPFFIYVFGPLLQSNILVGAIVGGLYLGFVFSAGAGAIEAYIEKVS--RNSNFEYGKARMFGC-VGWALCASI  152 (396)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHhh--hhcccccchhhhhcc-cHHHHHHHH
Confidence            22222111   111111     1111122223344444444455554544432  223445566544444 488889989


Q ss_pred             HHHhhhccccchhhhHHHHHHHHHHHH
Q 014628          354 VGVLQDHVNNWRKTTLALTSIFFLAAG  380 (421)
Q Consensus       354 ~g~l~~~~g~~~~~~~~~~~~~~~~~~  380 (421)
                      .|.+.+.  +++..|+..+.+.++..+
T Consensus       153 ~g~l~~~--~~~~~f~~~~~~~~~~~~  177 (396)
T TIGR00882       153 AGILFSI--DPQIVFWLGSGFALILML  177 (396)
T ss_pred             Hhhhhcc--CchHHHHHHHHHHHHHHH
Confidence            8888764  466777766655554443

>TIGR00898 2A0119 cation transport protein

Probab=99.10  E-value=4.7e-10  Score=106.01  Aligned_cols=128  Identities=12%  Similarity=-0.079  Sum_probs=104.7

Q ss_pred             cchhhHHHHhhhhcCCchHHHHHHHHHHHHHhhhhhhhhH--HHHHHHHHHhhhhhhhhccchhhhhhccCCCCCchhHH
Q 014628            5 LVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDF--WSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWL   82 (421)
Q Consensus         5 ~i~~~~~g~l~Dr~Grr~~~~~~~~~~~~~~~~~~~~~~~--~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~   82 (421)
                      +.+.++.+++.||+|||+.+.++.++.+++.++..+.++.  +...+.-++.+++.+..++....+..|.+|++.|++++
T Consensus       369 i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~  448 (505)
T TIGR00898       369 LPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVPVDLYFLRTALAVLGKFGITSAFQMVYLYTAELYPTVVRNLGV  448 (505)
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHhhhH
Confidence            4577889999999999999999999998888887776654  45555667777777778888899999999999999999


Q ss_pred             HHHHHHHHHHhhhHHHhHHhhhhcchhHHHHHHHHHHHHHHHHHHHhcccccc
Q 014628           83 SMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQL  135 (421)
Q Consensus        83 ~~~~~~~~~G~~~g~~~~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p~~~  135 (421)
                      ++.+....+|.+++|.+.+ + ...++..++.+.++..++.+++.++ .||+.
T Consensus       449 g~~~~~~~ig~~i~p~i~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~-lpet~  498 (505)
T TIGR00898       449 GVCSTMARVGSIISPFLVY-L-GEKWLFLPLVLFGGLALLAGILTLF-LPETK  498 (505)
T ss_pred             hHHHHHHHHHHHHHhHHHH-H-HHHHHhhHHHHHHHHHHHHHHHHHc-CcCCC
Confidence            9999999999999999988 4 4456778888888877777666554 47643

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=99.10  E-value=4.9e-09  Score=95.79  Aligned_cols=145  Identities=9%  Similarity=0.021  Sum_probs=107.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHHHHhhCCccchh-HHHhhhhHHHHHHhhhhhHHHhhhccccchhhHHHHHHHHHHH
Q 014628          207 VVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGA  285 (421)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~  285 (421)
                      ..+....+...+.........|.+ ++.++.+..+. ...+...++..++++..+++.||+|+|     +.+..+..+..
T Consensus         6 ~~~~~~f~~~G~~~~~~~~l~~~~-~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r-----~~~~~g~~l~~   79 (410)
T TIGR00885         6 ALITSLFALWGFANDITNPMVPQF-QQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYK-----AGILLGLFLYA   79 (410)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHH-HHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCch-----HHHHHHHHHHH
Confidence            344444555555555555666765 56677776555 445777889999999999999999999     77777776666


Q ss_pred             HHHHHHHh---hhhhHHHHHHHHHHHHHHHhccCchhhhhhcccCCchhhHHHHHHHHHHHhhcccCcchhHHHhh
Q 014628          286 ISCLTAFC---LSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQ  358 (421)
Q Consensus       286 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~  358 (421)
                      ...++...   .++.+.+++..++.+.+.+...+..+.++.+..|++++++..++.+...+. |..++|.+.+.+.
T Consensus        80 ~g~~l~~~~~~~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-G~~~g~~i~~~l~  154 (410)
T TIGR00885        80 LGAFLFWPAAEIMNYTLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPF-GSIIGMVVAQQLI  154 (410)
T ss_pred             HHHHHHHHHHhhccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence            65554332   235666677777888888888888888888888889999999999766666 8899998888775

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>TIGR00806 rfc RFC reduced folate carrier

Probab=99.09  E-value=1.2e-08  Score=91.31  Aligned_cols=129  Identities=13%  Similarity=0.043  Sum_probs=105.6

Q ss_pred             HHhhHHHHHhhCCccch-h-HHHhhhhHHHHHHhhhhhHHHhhhccccchhhHHHHHHHHHHHHHHHHHHhhhhhHHHHH
Q 014628          225 YWGPKAGYNIYHMSNAD-M-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLA  302 (421)
Q Consensus       225 ~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  302 (421)
                      +..| ++.+.++.+..+ . .+......+..+..+.+|+++||+|.|     +.+....+...+...+..+.++...+.+
T Consensus        47 ~a~p-~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K-----~vL~l~~l~Wsl~t~L~~fa~Sl~~L~i  120 (511)
T TIGR00806        47 FITP-YLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYK-----PVLVLQALSFVCVWLLLLLGTSVWHMQL  120 (511)
T ss_pred             HHHH-HHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCch-----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344 556678888766 4 445677788899999999999999999     8888888887777777777778888888


Q ss_pred             HHHHHHHHHHhccCchhhhhhcccCCchhhHHHHHHHHHHHhhcccCcchhHHHhhhccc
Q 014628          303 LFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVN  362 (421)
Q Consensus       303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~g  362 (421)
                      .-++.|.+.+... ....++..-+|+++|+++.|+.+..... |.++++++.+++ ...|
T Consensus       121 ~R~llGvaEA~~~-A~~syI~~WfP~kER~ratsi~~sg~~v-G~~Ia~~L~qll-~s~g  177 (511)
T TIGR00806       121 MEVFYSVTMAARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLL-GVFLSSVLGQLL-VTLG  177 (511)
T ss_pred             HHHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH-HhcC
Confidence            8889999998888 8899999999999999999999766666 999999898884 4444

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism]

Probab=99.09  E-value=3e-09  Score=89.41  Aligned_cols=310  Identities=10%  Similarity=-0.011  Sum_probs=199.7

Q ss_pred             ccchhhHHHHhhhhcCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhhhhhhhccchhhhhhccCCCCCchhHHH
Q 014628            4 LLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLS   83 (421)
Q Consensus         4 ~~i~~~~~g~l~Dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~   83 (421)
                      +.+.-.+.=.+.|..--|++++.-.+.......+.-+.++.+.+=+.-+..|...+ ...+-++++-+..+|+++.++.+
T Consensus        55 YLv~LvpvFlLTD~lrYKPvivlq~ls~v~~w~~lv~g~sV~~mQvlE~FyG~~tA-aEIAYysYIYs~Vd~~~Yqrvt~  133 (433)
T KOG3810|consen   55 YLVGLVPVFLLTDYLRYKPVVVLQALSGVPVWIMLVFGPSVKAMQVLEFFYGPATA-AEIAYYSYIYSKVDPEMYKRVTG  133 (433)
T ss_pred             HHHHHHHHHHHhhhhhcceeeeeeccchhHHHHHHHhcCCchheeeehhhcChHHH-HHHhhhheeeeecCHHHHHHHHH
Confidence            34455566678899999999988888888888888999999999999999999887 45678899999999999999999


Q ss_pred             HHHHHHHHHhhhHHHhHHhhhhc--chhHHHHHHHHHHHHHHHHHHHhcccccccccCCccccchhhhhhcccccccccC
Q 014628           84 MFYMCIPTGVALGYVYGGVVGSH--LNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNL  161 (421)
Q Consensus        84 ~~~~~~~~G~~~g~~~~~~l~~~--~~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (421)
                      ...++.-.|...|..++..+++.  .++...-.+.-....+..+..++ +|..++..-..+++++.         .    
T Consensus       134 y~RaA~L~g~~~g~vlaQlLvs~~~~sy~~LN~ISL~~~~ia~~~A~f-LP~v~rSl~f~~~~~~~---------~----  199 (433)
T KOG3810|consen  134 YCRAAFLVGKFVGSVLAQLLVSLETLSYTTLNYISLAEVTIAVLLALF-LPRVKRSLYFHRLEDKI---------S----  199 (433)
T ss_pred             HhHHHHHHHhHHHhHHHHHHhhhcccchhhhchhhHHHHHHHHHHHhh-CCCCchhhhhhcccccc---------e----
Confidence            99999999999999999888754  23344333333222233333333 34321110000000000         0    


Q ss_pred             CcccccccchhhhhhhccccchhhhhhhhhhhhhhhHHhhcchhHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhCCccch
Q 014628          162 NDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNAD  241 (421)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (421)
                          ..+.++..    ++.+...-........++++++..++|.+..-.+-+.+...+++-...|....-++.- .++..
T Consensus       200 ----v~~~e~~~----~~~~~~~~l~~~~~~l~~~l~~~y~np~ll~WSlWwAl~scg~~QV~nY~Q~LW~~~~-~~~~~  270 (433)
T KOG3810|consen  200 ----VGDLEEMN----PQASYMSYLRGAFVLLWRDLQECYSNPRLLKWSLWWALASCGYYQVTNYTQILWKEVA-PNPAN  270 (433)
T ss_pred             ----eccchhcC----ccchhhHHHHHHHHHHHHHHHHHhcCchhhhhHHHHHHhhchhHHHHHHHHHHHHhhC-CCchh
Confidence                00000000    0000000011234455567777888999888888888888888777777666555543 22212


Q ss_pred             h---HHHhhhhHHHHHHhhhhhHHHhhhccccchhhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhccCch
Q 014628          242 M---MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPV  318 (421)
Q Consensus       242 ~---~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (421)
                      .   ..-++..+.++++.+..|.+--++.|+..   .++..+...-+...+.+...++.|...+...+.........+..
T Consensus       271 vyNG~veAv~tlLGa~~~~~~g~l~i~w~r~g~---~ll~~~s~~~agllf~m~~t~~Iw~~Ya~yvlfr~~y~l~itiA  347 (433)
T KOG3810|consen  271 VYNGAVEAVSTLLGAIAALAAGYLNINWNRWGD---LLLAVGSAVQAGLLFIMAQTQHIWVCYAGYVLFRVIYQLTITIA  347 (433)
T ss_pred             hhcCHHHHHHHHHHHHHHHHHHheeeccchhhH---HHHHHHHHHhhhhhhhhhcccceehhhhhHHHHHhhHhhhhhHH
Confidence            1   11244556666777777777555444321   34455555556666666667788887777777777777777777


Q ss_pred             hhhhhcccCCchhhHHHHHHHH
Q 014628          319 NYVCLHSVKPSLRALSMAISTV  340 (421)
Q Consensus       319 ~~~~~~~~~~~~~~~~~g~~~~  340 (421)
                      ...++.....+.-|...|+++.
T Consensus       348 ~~~iA~nL~~e~~gLvFGiNTF  369 (433)
T KOG3810|consen  348 TFQIARNLSSELFGLVFGINTF  369 (433)
T ss_pred             HHHHHHhhhhhhheeeeehHHH
Confidence            7777888888888999998743

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=99.08  E-value=1.3e-09  Score=101.79  Aligned_cols=150  Identities=14%  Similarity=0.049  Sum_probs=101.7

Q ss_pred             HHHHHhhHHHHHhhCCccchh-HHHhhhhHHHHHHhhhhhHHHhhhccccchhhHHHHHHHHHHHHHHHHHH-----hhh
Q 014628          222 AYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAF-----CLS  295 (421)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~  295 (421)
                      .+....|.+.+ .++.+..+. ...+...++..++.++.|+++||+|+|     +.+..+.++.++......     ..+
T Consensus        47 ~~~~~~~~i~~-~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r-----~~l~~~~~~~~~~~~~~~~~~~~~~~  120 (467)
T PRK09556         47 NFKAAQNDMIS-TYGLSTTELGMIGLGFSITYGVGKTLVGYYADGKNTK-----QFLPFLLILSAICMLGFGASLGSGSV  120 (467)
T ss_pred             ChhhhhHHHHH-hcCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhccCcc-----chHHHHHHHHHHHHHHHHHHHhcccc
Confidence            34444665544 466665554 445667788899999999999999999     665554444333332222     235


Q ss_pred             hhHHHHHHHHHHHHHHHhccCchhhhhhcccCCchhhHHHHHHHHHHHhhcccCcchhHHHhhhcc--ccchhhhHHHHH
Q 014628          296 SLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHV--NNWRKTTLALTS  373 (421)
Q Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~--g~~~~~~~~~~~  373 (421)
                      +.+..++.-++.+++.+...+....++.+.+|+++|++++|+.+..... |.++++.+..++.+..  ++++..+.+.+.
T Consensus       121 ~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~rg~a~gi~~~~~~l-G~~l~~~i~~~~~~~~~~~~~~~~f~~~g~  199 (467)
T PRK09556        121 SLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRKRGRFLGFWNISHNL-GGAGAGGVALWGANYFFDGHVIGMFIFPSI  199 (467)
T ss_pred             hHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccceeeeEEeeecccch-hhhHHHHHHHHHHHhhccCcchhHHHHHHH
Confidence            6666777777788888888888889999999999999999999655555 8888887776665542  235555555454


Q ss_pred             HHHHH
Q 014628          374 IFFLA  378 (421)
Q Consensus       374 ~~~~~  378 (421)
                      ..++.
T Consensus       200 ~~~~~  204 (467)
T PRK09556        200 IALII  204 (467)
T ss_pred             HHHHH
Confidence            44333

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=99.08  E-value=3.8e-09  Score=99.51  Aligned_cols=110  Identities=9%  Similarity=0.048  Sum_probs=83.8

Q ss_pred             HHHhhhhHHHHHHhhhhhHHHhhhccccchhhHHHHHHHHHHHHHHHHHHhhhh------hHHHHHHHHHHHHHHHhccC
Q 014628          243 MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSS------LYGFLALFTVGELLVFATQA  316 (421)
Q Consensus       243 ~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~  316 (421)
                      .+.....++.+++.++.|++.||+|||     +.+....++..+..++.....+      .+.+++.-++.+++.+...+
T Consensus        60 ~~~~~~~ig~~ig~~~~g~l~d~~Grr-----~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~  134 (502)
T TIGR00887        60 AVNGSASIGTLAGQLFFGWLADKLGRK-----RVYGMELIIMIIATVASGLSPGSSPKSVMATLCFWRFWLGVGIGGDYP  134 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhccH-----HHHHHHHHHHHHHHHHHHHccCcccchHHHHHHHHHHHHHHHHhhhhH
Confidence            455677788999999999999999999     6666665555554444333332      45566777788888888889


Q ss_pred             chhhhhhcccCCchhhHHHHHHHHHHHhhcccCcchhHHHhh
Q 014628          317 PVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQ  358 (421)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~  358 (421)
                      ....+..|.+|++.|+++.++.+..... |..+++.+...+.
T Consensus       135 ~~~~~~~e~~p~~~Rg~~~~~~~~~~~~-g~~~g~~~~~~~~  175 (502)
T TIGR00887       135 LSAIITSEFATKKWRGAMMAAVFAMQGF-GILAGAIVALIVL  175 (502)
T ss_pred             HHHHHHHHhcChhhHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence            9999999999999999999999655555 8777776665543

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=99.05  E-value=8.5e-09  Score=92.08  Aligned_cols=187  Identities=10%  Similarity=0.013  Sum_probs=141.6

Q ss_pred             hhhhHHhhcchhHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhCCccchhHHHhhhhHHHHHHhhhhhHHHhhhccccchh
Q 014628          194 SQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADMMFGGVTIVCGIVGTISGGFILDQMGATISNA  273 (421)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~  273 (421)
                      +.+...++.++....+++...+++.+.....+++=-++++..+.+........+...+.++.-++.+++.+|+|+-    
T Consensus       361 ~a~~~~~~~s~~~llff~~av~mG~g~~lv~tFLfWHled~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv----  436 (618)
T KOG3762|consen  361 LADVGKVFASPHILLFFFVAVVMGAGVGLVFTFLFWHLEDLGGIKTLFGVVSALCHAGEILFYFFSFKLIEKIGHV----  436 (618)
T ss_pred             HHHHHHHhcCCCEEehhHHHHHHHHHHHHHHHHHHHHHhhcCCcceeeeehhhhhccchHHHHHHHHHHHHHhccc----
Confidence            3444456677776666666666666666666666556777665443222333455567788888999999999998    


Q ss_pred             hHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhccCchhhhhhcccCCchhhHHHHHHHHHHHhhcccCcchh
Q 014628          274 FKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPL  353 (421)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~  353 (421)
                       +++..+......=++......++|..+..-++-+...+..+....+++....||+.+.++.++.......+|-.+|+++
T Consensus       437 -~v~~lgLa~~~~Rf~~~S~L~n~W~vLPieilqgit~aliWaa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslI  515 (618)
T KOG3762|consen  437 -NVMYLGLACNVGRFLYYSYLQNPWMVLPIEILQGITHALIWAAIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLI  515 (618)
T ss_pred             -ceeeehhhHHHHHHHHHHHhcCchheeeHHHHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhh
Confidence             7777777777777777777889999998999999999999999999999999999999999999888888899999999


Q ss_pred             HHHhhhccccchhhhHHHHHHHHHHHHHHHHhh
Q 014628          354 VGVLQDHVNNWRKTTLALTSIFFLAAGIWFVGI  386 (421)
Q Consensus       354 ~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  386 (421)
                      +|.+.+.++. ...|..+++.+++..+..+...
T Consensus       516 GG~~v~~fg~-~ttf~~~giAcl~~l~~~~~iq  547 (618)
T KOG3762|consen  516 GGFVVERFGA-RTTFRIFGIACLVTLALFISIQ  547 (618)
T ss_pred             hhhhheeehh-HHHHHHHHHHHHHHHHHHHHhh
Confidence            9999999884 4667666666555555544444

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=99.03  E-value=3.2e-09  Score=81.41  Aligned_cols=126  Identities=17%  Similarity=0.208  Sum_probs=94.4

Q ss_pred             hhhHHHHHHhhhhhHHHhhhccccchhhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhccCchhhhhhccc
Q 014628          247 VTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSV  326 (421)
Q Consensus       247 ~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  326 (421)
                      ...++..++.+..+++.||++||     +.+.................++.+.......+.+.+.+...+.......|..
T Consensus         6 ~~~~~~~~~~~~~g~~~d~~g~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~   80 (141)
T TIGR00880         6 GYALGQLIYSPLSGLLTDRFGRK-----PVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFALVAGAALIADIY   80 (141)
T ss_pred             eehhHHHHHHhhHHHHHhhcchh-----HHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHC
Confidence            34567788899999999999998     6666665555555555555566666666777777777777788888899999


Q ss_pred             CCchhhHHHHHHHHHHHhhcccCcchhHHHhhhccccchhhhHHHHHHHHHHH
Q 014628          327 KPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFFLAA  379 (421)
Q Consensus       327 ~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~  379 (421)
                      |+++|+++.++.+..... |..++|.+.+.+.+..+ ++..+.......+...
T Consensus        81 ~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~  131 (141)
T TIGR00880        81 PPEERGVALGLMSAGIAL-GPLLGPPLGGVLAQFLG-WRAPFLFLAILALAAF  131 (141)
T ss_pred             ChhhhhHHHHHHHHhHHH-HHHHhHHhHHHHhcccc-hHHHHHHHHHHHHHHH
Confidence            999999999999766665 88999999999988754 6566666555444433

>PRK10133 L-fucose transporter; Provisional

Probab=99.03  E-value=2.1e-08  Score=92.51  Aligned_cols=145  Identities=9%  Similarity=0.029  Sum_probs=104.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHHHHhhCCccchh-HHHhhhhHHHHHHhhhhhHHHhhhccccchhhHHHHHHHHHHH
Q 014628          207 VVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGA  285 (421)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~  285 (421)
                      ..+.+.++...+.........|.+ ++.++.++.+. .......++..++.+..|++.||+|+|     +.+..+..+..
T Consensus        29 ~~~~~~~~~~~~~~~~~~~~~p~i-~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r-----~~l~~g~~~~~  102 (438)
T PRK10133         29 ALLCSLFFLWAVANNLNDILLPQF-QQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYK-----AGIITGLFLYA  102 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH-HHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcH-----HHHHHHHHHHH
Confidence            334444555566666677778876 66778876555 444677788999999999999999999     77777776666


Q ss_pred             HHHHHH---HhhhhhHHHHHHHHHHHHHHHhccCchhhhhhcccCCchhhHHHHHHHHHHHhhcccCcchhHHHhh
Q 014628          286 ISCLTA---FCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQ  358 (421)
Q Consensus       286 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~  358 (421)
                      +..++.   ...++.+.+++..++.+.+.+...+..+.++.+..+++.+...+++.+..... |..++|.+.+.+.
T Consensus       103 ~~~~l~~~~~~a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~-G~~~g~~~g~~l~  177 (438)
T PRK10133        103 LGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSF-GAIIAVVFGQSLI  177 (438)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence            665543   23456777777788888888888888888888765556666678887655554 8888887766544

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.03  E-value=7e-10  Score=101.33  Aligned_cols=118  Identities=8%  Similarity=0.006  Sum_probs=93.4

Q ss_pred             cccchhhHHHHhhhhcCCchHHHHHHHHHHHHH--hhhhh--hhhHHHHHHHHHHhhhhhhhhccchhhhhhccCCCCCc
Q 014628            3 GLLVASPIFASLAKSHNPFRLIGVGLSVWTFAT--AGCGS--SFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQK   78 (421)
Q Consensus         3 g~~i~~~~~g~l~Dr~Grr~~~~~~~~~~~~~~--~~~~~--~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r   78 (421)
                      +..++.++.|+++||+|||+.+..+..+..+..  +...+  .++.+.+....++.|++.+...+...+++.|.+|+++|
T Consensus       267 ~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~  346 (394)
T TIGR00883       267 LFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLMALLDSGSFTLFFFLVLGLALIGGMYTGPMGSFLPELFPTEVR  346 (394)
T ss_pred             HHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCccce
Confidence            456788899999999999998775554444333  22222  24667777888999999988999999999999999999


Q ss_pred             hhHHHH-HHHHHHHHhhhHHHhHHhhhhcch-hHHHHHHHHHHH
Q 014628           79 TAWLSM-FYMCIPTGVALGYVYGGVVGSHLN-WRYAFWGEAILM  120 (421)
Q Consensus        79 ~~~~~~-~~~~~~~G~~~g~~~~~~l~~~~~-wr~~f~~~~~~~  120 (421)
                      ++++++ ++.+..+|..++|.+++.+.++.| |++.++...+..
T Consensus       347 ~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~g~~~~~~~~~~~~~  390 (394)
T TIGR00883       347 YTGASLAYNLAGAIFGGFAPYIAAALVAMTGDWYAIGYYLAALA  390 (394)
T ss_pred             eeEeeehhHhHHHHHhhHHHHHHHHHHHHcCcchhHHHHHHHHH
Confidence            999998 456677899999999999999888 988877776543

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=99.02  E-value=2.2e-09  Score=100.26  Aligned_cols=142  Identities=13%  Similarity=0.145  Sum_probs=102.4

Q ss_pred             hCCccchh-HHHhhhhHHHHHHhhhhhHHHhhhccccchhhHHHHHHHHHHHHHHHHHHhh--hhhHHHHHHHHHHHHHH
Q 014628          235 YHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCL--SSLYGFLALFTVGELLV  311 (421)
Q Consensus       235 ~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~  311 (421)
                      ++.+.... .+.+...++..++.+..|++.||+|+|     +.+..+.++..+..++....  .+.+..++.-++.|++.
T Consensus        71 ~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r-----~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~  145 (465)
T TIGR00894        71 FKWSGALQGLILSSHFYGQIIIQIPVGYLAGKYVFK-----WSIGIGMFLSSVISIVIPWAAGGGIALVVFCRVIQGLAQ  145 (465)
T ss_pred             CCCCHHHhhHHHHHHHHHHHHHHcchHHHHHHhCcc-----hhhHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHhc
Confidence            34443333 344667788999999999999999998     66666655555444433222  23445566667777888


Q ss_pred             HhccCchhhhhhcccCCchhhHHHHHHHHHHHhhcccCcchhHHHhhhccccchhhhHHHHHHHHHHHHHH
Q 014628          312 FATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFFLAAGIW  382 (421)
Q Consensus       312 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~  382 (421)
                      +...+....++.+.+|+++|++++++.+..... |.+++|.+.+.+.+...+|+..|++.++..++..+++
T Consensus       146 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~-g~~i~~~l~~~l~~~~~gw~~~f~i~~~~~~~~~~~~  215 (465)
T TIGR00894       146 GSVSPATHKIIVKWAPPKERSRLLGMSTSGFQL-GTFIFLPISGWLCESWGGWPMIFYVFGIVGCAWSLLW  215 (465)
T ss_pred             ccchhhHHHHHHhcCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhccCCCCeehhhhhHHHHHHHHHH
Confidence            888888889999999999999999999665665 8899999999998874348788887766654444333

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=99.01  E-value=3.9e-09  Score=97.14  Aligned_cols=128  Identities=16%  Similarity=0.245  Sum_probs=111.7

Q ss_pred             cccchhhHHHHhhhhcCCc--hHHHHHHHHHHHHHhhhhh--------hhhHHHHHHHHHHhhhhhhhhccchhhhhhcc
Q 014628            3 GLLVASPIFASLAKSHNPF--RLIGVGLSVWTFATAGCGS--------SFDFWSIAICRMLVGVGEASFISLAAPFIDDN   72 (421)
Q Consensus         3 g~~i~~~~~g~l~Dr~Grr--~~~~~~~~~~~~~~~~~~~--------~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~   72 (421)
                      ..++|++++|++.||+|.|  +++..+++++.+..+...+        .++-+.+.+.-++.|+..|..++...++.+|.
T Consensus       329 ~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~~~i~~~g~~G~~~~~~g~~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~L  408 (477)
T PF11700_consen  329 VAIIGALLFGWLQDRFGPKTKRTLLISLILWIIIPLYGLFGFWPSFFGLKSPWEFWVLAVLIGLFMGGIQSASRSLFSRL  408 (477)
T ss_pred             HHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHhhhcccCcccHHHHHHHHHHHHHHhhhHHHHHHHHHHHh
Confidence            3567999999999999999  8999998888776666665        67888999999999999999999999999999


Q ss_pred             CCCCCchhHHHHHHHHHHHHhhhHHHhHHhhhhcch-hHHHHHHHHHHHHHHHHHHHhc
Q 014628           73 APVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLN-WRYAFWGEAILMLPFAVLAFVI  130 (421)
Q Consensus        73 ~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~-wr~~f~~~~~~~~~~~~~~~~~  130 (421)
                      .|+++.+..+|++....-....+||++.+.+.+..| -|+.+....++.++..++.++.
T Consensus       409 iP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg~~r~g~~~l~~lf~~gl~ll~~v  467 (477)
T PF11700_consen  409 IPPGREAEFFGLYAITGKASSWLGPLLFGLITDATGSQRYGFLFLLVLFLIGLILLFFV  467 (477)
T ss_pred             CCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHhhc
Confidence            999999999999999999999999999999998776 8888888877766655555443

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=99.00  E-value=2.1e-08  Score=91.83  Aligned_cols=159  Identities=14%  Similarity=0.056  Sum_probs=106.6

Q ss_pred             HHHHHHHHHHHHHHhhHHHHHhhCCccchhHHHhhhhHHHHHHhhhhhHHHhhh-----ccccchhhHHHHHHHHHHHHH
Q 014628          213 YIAYNFVIGAYSYWGPKAGYNIYHMSNADMMFGGVTIVCGIVGTISGGFILDQM-----GATISNAFKLLSAATFLGAIS  287 (421)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-----~~~~~~~~~~~~~~~~~~~~~  287 (421)
                      ++.+.........-+|.|+++. |.+..+..+....... .+..++.|+++||+     |||+    +++..+....++.
T Consensus         8 ~~~~~~~~~~~~~~~~~~l~~~-g~~~~~ig~~~~~~~~-~~~~~l~g~~~Dr~~~~~~g~rr----~~l~~~~~~~~l~   81 (402)
T PRK11902          8 GFASGLPLALTSGTLQAWMTVE-GLDIQTIGFFSLVGQA-YIFKFLWAPLMDRYTPPLLGRRR----GWLLLTQVGLAAS   81 (402)
T ss_pred             HHHHhhhHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHH-HHHHHHHHHHHHcccccCCCcch----hHHHHHHHHHHHH
Confidence            4556666777778899999986 6665555333222222 57789999999999     6652    3455545444444


Q ss_pred             HHHHHhh---hhhHHHHHHHHHHHHHHHhccCchhhhhhcccCCchhhHHHHHHHHHHHhhcccCcchhHHHhhhccccc
Q 014628          288 CLTAFCL---SSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNW  364 (421)
Q Consensus       288 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~g~~  364 (421)
                      .......   .+.+......++.+++.....++..+++.+..|+++|+++.++....... |.++++.+.+.+.+...+|
T Consensus        82 ~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~-g~i~g~~l~~~l~~~~~gw  160 (402)
T PRK11902         82 IAAMAFCPPHAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRL-AMLVSGGLALWLADRVLGW  160 (402)
T ss_pred             HHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHH-HHHHHhHHHHHHHhcccCH
Confidence            3333333   23444444445556666667777888999999999999999999654444 8888888888888864458


Q ss_pred             hhhhHHHHHHHHHH
Q 014628          365 RKTTLALTSIFFLA  378 (421)
Q Consensus       365 ~~~~~~~~~~~~~~  378 (421)
                      +..+++.+...++.
T Consensus       161 ~~~f~i~a~~~l~~  174 (402)
T PRK11902        161 GNTYLLMAGLMLAG  174 (402)
T ss_pred             HHHHHHHHHHHHHH
Confidence            88888777655443

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=99.00  E-value=1.4e-08  Score=105.58  Aligned_cols=163  Identities=13%  Similarity=-0.020  Sum_probs=106.2

Q ss_pred             HhhcchhHHHHHHHHHHHHHHHHHHHH----HhhHHHHHhhCCcc-chh-HHHhhhhHHHHHHhhhhhHHHhhhccccch
Q 014628          199 VLLQEKVYVVNVLGYIAYNFVIGAYSY----WGPKAGYNIYHMSN-ADM-MFGGVTIVCGIVGTISGGFILDQMGATISN  272 (421)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~  272 (421)
                      .+++++.++.+....++..+..+....    +....+.+..+.+. ... ...++..+..++..+++|+++||++||   
T Consensus         6 ~l~~~~~f~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~G~laDr~~rk---   82 (1140)
T PRK06814          6 YLMKSRRFAPLFWTQFFGAFNDNFLKNALVILILYGLSGALGAYNNALVTLAGAVFILPFFIFSALAGQLADKYDKA---   82 (1140)
T ss_pred             hhhhccccHHHHHHHHHhHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHhhhHHhhhhhccHH---
Confidence            355666666666655554444332222    11211211111111 112 233556677889999999999999998   


Q ss_pred             hhHHHHH---HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhccCchhhhhhcccCCchhhHHHHHHHHHHHhhcccC
Q 014628          273 AFKLLSA---ATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVP  349 (421)
Q Consensus       273 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~  349 (421)
                        +++..   ..+......+.....++.+.++++.++.+.+.+...+...+++.+.+++++++.++|+.+..... |.++
T Consensus        83 --~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~l~gi~~a~~~p~~~a~l~~~~~~~~~~~a~~~~~~~~~i-g~~i  159 (1140)
T PRK06814         83 --KLAKILKFAEIGIAALAIYGFHLNSVPLLFAALFLMGIHSALFGPIKYSILPDHLNKDELLGANALVEAGTFI-AILL  159 (1140)
T ss_pred             --HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhchHHHHhhHhhcCccccchhhHHHHHHHHH-HHHH
Confidence              54321   22222222222233367777788888888888889999999999999999999999999766666 9999


Q ss_pred             cchhHHHhhhccccchhhh
Q 014628          350 SSPLVGVLQDHVNNWRKTT  368 (421)
Q Consensus       350 ~~~~~g~l~~~~g~~~~~~  368 (421)
                      ||.+.|++.+..+ +...+
T Consensus       160 gp~l~g~l~~~~~-~~~~~  177 (1140)
T PRK06814        160 GTIIGGLATISGN-FVILV  177 (1140)
T ss_pred             HHHHHHHHHhccc-cHHHH
Confidence            9999999998755 65555

>PRK09952 shikimate transporter; Provisional

Probab=99.00  E-value=1.9e-08  Score=92.99  Aligned_cols=162  Identities=16%  Similarity=0.149  Sum_probs=100.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHHHHhh--CCccchhHHH-----hhhhHHHHHHhhhhhHHHhhhccccchhhHHHHH
Q 014628          207 VVNVLGYIAYNFVIGAYSYWGPKAGYNIY--HMSNADMMFG-----GVTIVCGIVGTISGGFILDQMGATISNAFKLLSA  279 (421)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~-----~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~  279 (421)
                      ....+.+++-..-...+....|.+..+.+  +.++......     .+..++..++.++.|++.||+|||     +.+..
T Consensus        25 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~G~l~Dr~Grr-----~~l~~   99 (438)
T PRK09952         25 LGSFAGAVVDWYDFLLYGITAALVFNREFFPQVSPAMGTLAAFATFGVGFLFRPLGGVVFGHFGDRLGRK-----RMLML   99 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhccH-----HHHHH
Confidence            33333444433334444444554444433  3443322221     223355678888899999999999     77777


Q ss_pred             HHHHHHHHHHHHHhhhhhH--------HHHHHHHHHHHHHHhccCchhhhhhcccCCchhhHHHHHHHHHHHhhcccCcc
Q 014628          280 ATFLGAISCLTAFCLSSLY--------GFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSS  351 (421)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~  351 (421)
                      +..+..+..++....++..        .+++.-++.|++.+..++....++.|..|+++|+...+..+..... |..+++
T Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~g~~~-G~~l~~  178 (438)
T PRK09952        100 TVWMMGIATALIGLLPSFSTIGWWAPVLLVTLRAIQGFAVGGEWGGAALLAVESAPKNKKAFYSSGVQVGYGV-GLLLST  178 (438)
T ss_pred             HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhCCCCCCcHHHHHHHHHHHH-HHHHHH
Confidence            7777777666666655543        2444556677777777788888999999999999998888544444 766666


Q ss_pred             hhHHHhhhcc-------ccchhhhHHHHHH
Q 014628          352 PLVGVLQDHV-------NNWRKTTLALTSI  374 (421)
Q Consensus       352 ~~~g~l~~~~-------g~~~~~~~~~~~~  374 (421)
                      .+...+....       -+|+..|++.+..
T Consensus       179 ~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~  208 (438)
T PRK09952        179 GLVSLISMMTTDEQFLSWGWRIPFLFSIVL  208 (438)
T ss_pred             HHHHHHHHhCCHHHhhccChHHHHHHHHHH
Confidence            5555544221       2377777665443

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=98.99  E-value=1.3e-08  Score=106.08  Aligned_cols=155  Identities=10%  Similarity=0.033  Sum_probs=108.2

Q ss_pred             hhcchhHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhCCccch---hHHHhhhhHHHHHHhhhhhHHHhhhccccchhhHH
Q 014628          200 LLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNAD---MMFGGVTIVCGIVGTISGGFILDQMGATISNAFKL  276 (421)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~  276 (421)
                      .++++.++.+++..++..+........+..+....++.+...   ....++..++.+++.++.|+++||+|||     +.
T Consensus         5 ~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~grk-----~~   79 (1146)
T PRK08633          5 LLKIIGFLPLLLTQFLNAFNDLGHKILIQNTLIKAYDGSEQVILTAIVNALFLLPFLLLSSPAGFLADKFSKN-----RV   79 (1146)
T ss_pred             hhhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHhhhHhhhcccccHH-----HH
Confidence            456677777776666655555444444444444444444322   2333566777889999999999999998     66


Q ss_pred             HHHHHHHHHHHHHH---HHhhhhhHHHHHHHHHHHHHHHhccCchhhhhhcccCCchhhHHHHHHHHHHHhhcccCcchh
Q 014628          277 LSAATFLGAISCLT---AFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPL  353 (421)
Q Consensus       277 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~  353 (421)
                      +..+.++..+..++   ....++.+.+++..++.+++.+...+....++.+.+|+++|++++|+....... |.++++.+
T Consensus        80 l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i-g~~lg~~l  158 (1146)
T PRK08633         80 IRIVKLFEVGLTLLIVLAYYLGWFWLAFAVTFLLGAQSAIYSPAKYGIIPELVGKENLSRANGLLEAFTIV-AILAGTAL  158 (1146)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHhhchHHHhhhHHhcCcccchhhhhHHHHHHHH-HHHHHHHH
Confidence            66555443333222   223345666777777788888888888899999999999999999999666555 98999999


Q ss_pred             HHHhhhc
Q 014628          354 VGVLQDH  360 (421)
Q Consensus       354 ~g~l~~~  360 (421)
                      .+++.+.
T Consensus       159 ~~~l~~~  165 (1146)
T PRK08633        159 FSFLFES  165 (1146)
T ss_pred             HHHHHHh
Confidence            9998875

>PTZ00207 hypothetical protein; Provisional

Probab=98.98  E-value=2.4e-08  Score=93.45  Aligned_cols=154  Identities=14%  Similarity=0.064  Sum_probs=96.4

Q ss_pred             HHHHHHHHhhHHHHHhhCCccchhHHHhhhhHHHHHHhhhhhHHHhhhccccchhhHHHHHHHHHHHHHHHHHHhh----
Q 014628          219 VIGAYSYWGPKAGYNIYHMSNADMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCL----  294 (421)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----  294 (421)
                      ..+.+..+.|. +++.++.+..+.....-.+.......+..|++.||+|+|     +.+..+.++..++.++....    
T Consensus        42 ~~y~fsv~s~~-L~~~lgls~~~l~~i~svg~~~g~~~lp~G~L~Dr~G~R-----~vllig~ll~~iG~ll~ala~~~~  115 (591)
T PTZ00207         42 FMYAFNLISGA-MQARYNLTQRDLSTITTVGIAVGYFLLPYSFIYDYLGPR-----PIFVLSMTVFCLGTLLFALTFQEV  115 (591)
T ss_pred             HHHHHHHHHHH-HHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcH-----HHHHHHHHHHHHHHHHHHHHhccc
Confidence            34455555665 466688876554322111222234556789999999999     77777777766666555544    


Q ss_pred             --hhhHHHHHHHHHHHHHHHhccCchhhhhhcccCCchhhHHHHHHHHHHHhhccc-CcchhHHHhhhccccchhhhHHH
Q 014628          295 --SSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDV-PSSPLVGVLQDHVNNWRKTTLAL  371 (421)
Q Consensus       295 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~-~~~~~~g~l~~~~g~~~~~~~~~  371 (421)
                        .+.+.+.+..++.+.+.+...+.....+.+.+ |++||.+.|+.....+. |++ +++...+++.+   ++...+++.
T Consensus       116 i~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~F-p~~RG~a~Gi~~~~~gL-GsaI~~~l~~~l~~~---~~~~~fl~l  190 (591)
T PTZ00207        116 IEGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVF-PSNRGAVVAIMKTFTGL-GSAILGSIQLAFFSD---NTSAYFFFL  190 (591)
T ss_pred             ccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-hhhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHH---hHHHHHHHH
Confidence              35666666666777776666666666677766 57899999999777776 665 45545555443   244556666


Q ss_pred             HHHHHHHHHHHH
Q 014628          372 TSIFFLAAGIWF  383 (421)
Q Consensus       372 ~~~~~~~~~~~~  383 (421)
                      +...++..++..
T Consensus       191 ~vl~~vv~ll~~  202 (591)
T PTZ00207        191 MSFALVVGILAI  202 (591)
T ss_pred             HHHHHHHHHHHH
Confidence            555544444433

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.97  E-value=9.6e-09  Score=88.36  Aligned_cols=133  Identities=14%  Similarity=0.098  Sum_probs=112.6

Q ss_pred             HHhhhhHHHHHHhhhhhHHHhhhccccchhhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhccCchhhhhh
Q 014628          244 FGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCL  323 (421)
Q Consensus       244 ~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (421)
                      +.+...+.+++.+++.|.+.||+|+|     ..++++..+.....+++.+.++.+..++.=.+-+.+.........++++
T Consensus       111 LFaskA~~qllvnp~~G~l~~~iGy~-----ipm~~Gl~vmf~sTilFafg~sy~~l~vAR~LQgvgsA~~~tsglamlA  185 (464)
T KOG3764|consen  111 LFASKALVQLLVNPFFGNLIDRIGYK-----IPMVAGLFVMFLSTILFAFGNSYPMLFVARSLQGVGSAFADTSGLAMLA  185 (464)
T ss_pred             HHHHHHHHHHHhcccchhhHHHhccc-----cHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHhhhhHHHHHhhhHHHHH
Confidence            33566788899999999999999999     7778888778777788877788887777888888898888899999999


Q ss_pred             cccCCc-hhhHHHHHHHHHHHhhcccCcchhHHHhhhccccchhhhHHHHHHHHHHHHHHH
Q 014628          324 HSVKPS-LRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFFLAAGIWF  383 (421)
Q Consensus       324 ~~~~~~-~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~  383 (421)
                      +.+|++ .|++++|+.-.+... |-.+||+++|.++|..| +..+|+++++++++-..+-+
T Consensus       186 d~f~~d~er~~vmGialgfisl-G~lvgPpfGGilYe~~G-k~aPFlVL~~v~Lld~~L~l  244 (464)
T KOG3764|consen  186 DVFPEDNERGSVMGIALGFISL-GVLVGPPFGGILYEFAG-KSAPFLVLAIVLLLDGALQL  244 (464)
T ss_pred             HHcccchhhhHHHHHHHHHHhc-cceecCCcccchHhhcC-CcCcHHHHHHHHHHHHHHHH
Confidence            999986 689999999666665 99999999999999987 77999999888777666554

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=98.97  E-value=2.8e-09  Score=98.92  Aligned_cols=108  Identities=18%  Similarity=0.154  Sum_probs=92.2

Q ss_pred             ccccchhhHHHHhhhhcCCchHHHHHHHHHHHHHhhhhhh-hhHHHHHHHHHHhhhhhhhhccchhhhhhccCC------
Q 014628            2 VGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSS-FDFWSIAICRMLVGVGEASFISLAAPFIDDNAP------   74 (421)
Q Consensus         2 lg~~i~~~~~g~l~Dr~Grr~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~------   74 (421)
                      ++.+++.+++++++||+|+|+++..+.++..++.++..+. ++.+.+++..++.|++.+...+...++++|..+      
T Consensus       268 i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  347 (437)
T TIGR00792       268 VAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFFFAGSNLPLILVLIILAGFGQNFVTGLVWALVADTVDYGEWKT  347 (437)
T ss_pred             HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhc
Confidence            3456788999999999999999999998888887777665 466777788899999999889999999998865      


Q ss_pred             -CCCchhHHHHHHHHHHHHhhhHHHhHHhhhhcchh
Q 014628           75 -VPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNW  109 (421)
Q Consensus        75 -~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~w  109 (421)
                       ++++|..+++.+....+|..+++.+.+.+.+..||
T Consensus       348 ~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~~~G~  383 (437)
T TIGR00792       348 GVRAEGLVYSVRTFVRKLGQALAGFLVGLILGIIGY  383 (437)
T ss_pred             CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence             45679999999999999999999999999876665

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=98.97  E-value=4.5e-08  Score=91.18  Aligned_cols=152  Identities=16%  Similarity=0.112  Sum_probs=110.7

Q ss_pred             HHhhHHHHHhhCCccchhHHHhhhhHHHHHHhhhhhHHHhhhccccchhhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Q 014628          225 YWGPKAGYNIYHMSNADMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALF  304 (421)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  304 (421)
                      .-++....+.++ ++....+.....++..++.++.|+++|.+|||     ...+.+.++..++.+.....++...++...
T Consensus        65 ~~l~~I~~diG~-~~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr-----~~~i~g~~l~vvG~Iv~atA~~~~~~iag~  138 (599)
T PF06609_consen   65 SILPYINADIGG-SDNWSWFSTAWTLASAVSFPFVGRLSDLFGRR-----YFFIIGSLLGVVGSIVCATAQNMNTFIAGM  138 (599)
T ss_pred             HHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHhhHHHHHHhcch-----HHHHHHHHHHHhHHHHhhcCCcHHHHHHHH
Confidence            344555555544 44445566667788888999999999999999     888999999999998888888888888888


Q ss_pred             HHHHHHHHhccCchhhhhhcccCCchhhHHHHHHHHHHHhhcccCcchhHHHhhhccccchhhhHHHHHHHHHHHHHHHH
Q 014628          305 TVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFFLAAGIWFV  384 (421)
Q Consensus       305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~  384 (421)
                      .+.+.+.+... .....+.|..|.+.|..+.++.. .........+|.+...+... ++|++.+++..+...++.+..++
T Consensus       139 ~l~GvgaG~~~-~~~~~isEl~p~k~R~~~~~~~~-~~~i~~~~~~~~ia~~~~~~-~~WRw~~~~~~i~~~i~~vl~~~  215 (599)
T PF06609_consen  139 VLYGVGAGVQE-LAALAISELVPNKWRGLGLAIAS-IPFIITTWISPLIAQLFAAH-SGWRWIFYIFIIWSGIALVLIFF  215 (599)
T ss_pred             HHHHHhhHHHH-HHHHHHHHhcccchhhhHhHHHH-HHHHhhhcccHHHHHHhccC-CCcchHHHHHHHHHHHHHHHHHH
Confidence            88888765443 34556889999999988887774 44444555677666555443 56999998887766555544443


Q ss_pred             h
Q 014628          385 G  385 (421)
Q Consensus       385 ~  385 (421)
                      .
T Consensus       216 f  216 (599)
T PF06609_consen  216 F  216 (599)
T ss_pred             H
Confidence            3

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=98.97  E-value=4.9e-09  Score=95.27  Aligned_cols=118  Identities=15%  Similarity=0.142  Sum_probs=99.9

Q ss_pred             cccchhhHHHHhhhhcCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhhhhhhhccchhhhhhccCCCCCchhHH
Q 014628            3 GLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWL   82 (421)
Q Consensus         3 g~~i~~~~~g~l~Dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~   82 (421)
                      +..+..++.|++.||+|+|+.+..+.++.+++.++.+++++.+.+++..++.|++.+...+....++.+. +++++++..
T Consensus       252 ~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~-~~~~~~~~~  330 (382)
T PRK11128        252 AEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLMGSTTALPWLIVIQILHCGTFTVCHLAAMRYIAAR-PGSEVIRLQ  330 (382)
T ss_pred             HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CHhhhHHHH
Confidence            3456678899999999999999999999999888888899999999999999999998888888888887 566678889


Q ss_pred             HHHH-HHHHHHhhhHHHhHHhhhhcchhHHHHHHHHHHHHH
Q 014628           83 SMFY-MCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLP  122 (421)
Q Consensus        83 ~~~~-~~~~~G~~~g~~~~~~l~~~~~wr~~f~~~~~~~~~  122 (421)
                      +.+. ....+|..+||.++|.+.+.+|+ ..|+..+++.++
T Consensus       331 ~~~~~~~~~~g~~ig~~i~G~l~~~~g~-~~~~~~~~~~~~  370 (382)
T PRK11128        331 ALYSALAMGGSIAIMTVLSGFLYQHLGA-GVFWVMALVALP  370 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHH
Confidence            9886 55678889999999999999887 466666655443

>PRK11010 ampG muropeptide transporter; Validated

Probab=98.96  E-value=5.9e-08  Score=90.89  Aligned_cols=172  Identities=14%  Similarity=0.022  Sum_probs=112.5

Q ss_pred             hcchhHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhCCccchhHHHhhhhHHHHHHhhhhhHHHhhh-----ccccchhhH
Q 014628          201 LQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADMMFGGVTIVCGIVGTISGGFILDQM-----GATISNAFK  275 (421)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-----~~~~~~~~~  275 (421)
                      .++|+...+....+............+|.++.+. +.+..+.......... .++.++.+.++||+     |||+    .
T Consensus         9 ~~~~~~~~~~~l~~~~gl~~~~~~~~l~~~l~~~-g~~~~~ig~~~~~~~~-~~~~~l~gpl~Dr~~~~~~Grrr----~   82 (491)
T PRK11010          9 FQQPNSAILLILGFASGLPLALTSGTLQAWMTVE-NIDLKTIGFFSLVGQA-YVFKFLWSPLMDRYTPPFLGRRR----G   82 (491)
T ss_pred             HcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH-HHHHHHHHHHHHcccccCCCCch----H
Confidence            3555666666656666666777777788887774 4554333332222222 25789999999999     7662    3


Q ss_pred             HHHHHHHHHHHHHHHHHhh---hhhHHHHHHHHHHHHHHHhccCchhhhhhcccCCchhhHHHHHHHHHHHhhcccCcch
Q 014628          276 LLSAATFLGAISCLTAFCL---SSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSP  352 (421)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~  352 (421)
                      .+..+.+............   ++.+...+..++.+++.+...++...+..|.+|+++|+++.++....... |.++++.
T Consensus        83 ~ll~~~i~~~~~~~~~a~~~~~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~l-G~llg~~  161 (491)
T PRK11010         83 WLLATQLLLLVAIAAMGFLEPGTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEERGAGAAISVLGYRL-AMLVSGG  161 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHH-HHHHHHH
Confidence            3444444444443333222   24445555566667777777777788999999999999999999655554 8888998


Q ss_pred             hHHHhhhccccchhhhHHHHHHHHHHH
Q 014628          353 LVGVLQDHVNNWRKTTLALTSIFFLAA  379 (421)
Q Consensus       353 ~~g~l~~~~g~~~~~~~~~~~~~~~~~  379 (421)
                      +.+++.+...+|+..|++.+...++..
T Consensus       162 l~~~l~~~~~GWr~~f~i~a~l~ll~~  188 (491)
T PRK11010        162 LALWLADRYLGWQGMYWLMAALLIPCI  188 (491)
T ss_pred             HHHHHHhcccCHHHHHHHHHHHHHHHH
Confidence            888888843358888888776554443

>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=98.95  E-value=6.3e-08  Score=78.74  Aligned_cols=288  Identities=12%  Similarity=0.105  Sum_probs=151.2

Q ss_pred             ccchhhHHHHhhhhcCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhhhhhhhccchhhh-hhccCCCCCchhHH
Q 014628            4 LLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPF-IDDNAPVPQKTAWL   82 (421)
Q Consensus         4 ~~i~~~~~g~l~Dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~-i~~~~~~~~r~~~~   82 (421)
                      ..+...+.|.++|+-|||+.-+.-++.+.++++ .-.+++|-.++++|++.|++.+..+....++ +.|..++  |+.-.
T Consensus        85 smLFGtivgSLaDkqGRKracvtycitYiLsCi-TKhSpqYkVLmVGR~LGGiaTsLLFSaFEsWliaEHnek--r~Feq  161 (454)
T KOG4332|consen   85 SMLFGTIVGSLADKQGRKRACVTYCITYILSCI-TKHSPQYKVLMVGRVLGGIATSLLFSAFESWLIAEHNEK--RGFEQ  161 (454)
T ss_pred             HHHHHHHHHHHHhhhccccceeeehHHHHHHHH-hhcCCceEEEeehhhhhhHHHHHHHHHHHHHHHHHhhhc--cCChH
Confidence            345667889999999999975555544444332 3457889999999999999999888877664 6776533  33211


Q ss_pred             HH----HH----HHHHHHhhhHHHhHHhhhhcch--hHHHHHHHHHHHHHHHHHHHhcccccccccCCccccchhhhhhc
Q 014628           83 SM----FY----MCIPTGVALGYVYGGVVGSHLN--WRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASV  152 (421)
Q Consensus        83 ~~----~~----~~~~~G~~~g~~~~~~l~~~~~--wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~  152 (421)
                      -+    +.    .+..+=.+++.+.+..+.+.++  --.+|-..+.+..+...+.+   ..+....+++.+.+..     
T Consensus       162 qWls~TFskA~ffgNglvAiiaGlfgn~lvd~~slGPVAPFdAAacfLaigmAvil---~~W~ENygdps~~kdl-----  233 (454)
T KOG4332|consen  162 QWLSVTFSKAVFFGNGLVAIIAGLFGNLLVDTFSLGPVAPFDAAACFLAIGMAVIL---SSWSENYGDPSENKDL-----  233 (454)
T ss_pred             hhhhHHHHHHHHhhccHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHH---hhhhhccCChhhhHHH-----
Confidence            11    11    2223334445555555655443  33455444433222222221   2221121122221111     


Q ss_pred             ccccccccCCcccccccchhhhhhhccccchhhhhhhhhhhhhhhHHhhcchhHHHHHHHHHHH-HHHHHHHHHHhhHHH
Q 014628          153 SEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAY-NFVIGAYSYWGPKAG  231 (421)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  231 (421)
                                                           ..+.....+.+..++++..+.....++ ...+.....|.|..-
T Consensus       234 -------------------------------------ltqf~gaa~aiaSD~ki~LLG~iqsLFE~smytFVFLWTPaLs  276 (454)
T KOG4332|consen  234 -------------------------------------LTQFKGAARAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALS  276 (454)
T ss_pred             -------------------------------------HHHhhHhHHHHhcchHHHHHHHHHHHHhhhhheeeeeecccCC
Confidence                                                 111122344455666655544333333 233333344666533


Q ss_pred             HHhhCCccchhHHHhhhhHHHHHHhhhhhHHHhhhccccchhhHHHHHHHHHHHHHHHHHHhh-------hhhHHHHHHH
Q 014628          232 YNIYHMSNADMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCL-------SSLYGFLALF  304 (421)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~  304 (421)
                      -+..+. +....+ +...+.+++|+-+..++..|-..+.   ...+.+..++....+.+....       .++....+.+
T Consensus       277 pn~e~i-PhGfiF-atFMlASmLGSSla~Rl~s~s~~~v---e~ymqivf~vs~a~l~Lpilt~~vsP~kes~~~s~i~F  351 (454)
T KOG4332|consen  277 PNDEEI-PHGFIF-ATFMLASMLGSSLASRLLSRSSPKV---ESYMQIVFLVSIAALLLPILTSSVSPSKESPSESLIGF  351 (454)
T ss_pred             CCcccC-CchhHH-HHHHHHHHHhhHHHHHHHhcCCccc---chHHHHHHHHHHHHHHHHHHHhccCCCcCCchHHHHHH
Confidence            222211 222222 3344555666666555555433321   133444444333333332221       1334446677


Q ss_pred             HHHHHHHHhccCchhhhhhcccCCchhhHHHHHHHHHHHh
Q 014628          305 TVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHI  344 (421)
Q Consensus       305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  344 (421)
                      ++.-.+.+..+|...-+-.+.+|.+.|++.+-+...-.+.
T Consensus       352 ~~~E~cvGlfwPSimkmRsqyIPEearstimNfFRvPLni  391 (454)
T KOG4332|consen  352 CLFEACVGLFWPSIMKMRSQYIPEEARSTIMNFFRVPLNI  391 (454)
T ss_pred             HHHHHHHhhcchHHHHHHHhhCCHHHHhhhhhheechhhH
Confidence            7788899999999999999999999998776665443343

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=98.93  E-value=4.7e-08  Score=90.38  Aligned_cols=123  Identities=16%  Similarity=0.109  Sum_probs=85.0

Q ss_pred             hhhhHHHHHHhhhhhHHHhhhccccchhhHHHHHHHHHHHHHHHHHHhhhhh--------HHHHHHHHHHHHHHHhccCc
Q 014628          246 GVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSL--------YGFLALFTVGELLVFATQAP  317 (421)
Q Consensus       246 ~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~  317 (421)
                      ....++..++.++.|+++||+|||     +.+..+.....+..+.....++.        ..+++.-++.|++.+..++.
T Consensus        70 ~~~~~~~~ig~~~~G~l~Dr~Grr-----~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~  144 (432)
T PRK10406         70 AAGFLMRPIGGWLFGRIADKHGRK-----KSMLISVCMMCFGSLVIACLPGYETIGTWAPALLLLARLFQGLSVGGEYGT  144 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCcH-----HHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHhhhhhhHhh
Confidence            334456669999999999999999     77777777766666555443332        23455556777888888888


Q ss_pred             hhhhhhcccCCchhhHHHHHHHHHHHhhcccCcchhHHHhhh--------ccccchhhhHHHHHHH
Q 014628          318 VNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQD--------HVNNWRKTTLALTSIF  375 (421)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~--------~~g~~~~~~~~~~~~~  375 (421)
                      ...++.|..|+++|+.+.++.+..... |.++++.+...+..        .. +|+..|++.++..
T Consensus       145 ~~~~i~e~~p~~~rg~~~~~~~~~~~~-G~~~~~~~~~~~~~~~~~~~~~~~-gWr~~F~i~~~~~  208 (432)
T PRK10406        145 SATYMSEVAVEGRKGFYASFQYVTLIG-GQLLALLVVVVLQQTLEDAELREW-GWRIPFALGAVLA  208 (432)
T ss_pred             HHHHHHHhCCCCcccHHHHHHHHHHHH-HHHHHHHHHHHHHHhCCHHHHhcc-chHHHHHHHHHHH
Confidence            899999999999999998887544443 65666544433321        22 4777777654443

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=98.93  E-value=3.3e-08  Score=90.60  Aligned_cols=142  Identities=13%  Similarity=0.019  Sum_probs=92.6

Q ss_pred             HHHHHHHHHHHHHHHHHHhhHHHHHhhCCccchh-HHHhhhhHHHHHHhhhhhHHHhh----hccccchhhHHHHH-HHH
Q 014628          209 NVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQ----MGATISNAFKLLSA-ATF  282 (421)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~----~~~~~~~~~~~~~~-~~~  282 (421)
                      .....+..++.+.....+++.|+++ .+.+.... ....+..+.+++..++.|+++||    +|||     +..+. ...
T Consensus         9 ~~~~~~Giq~~~~l~~~~l~~yl~~-lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRR-----rp~il~g~~   82 (477)
T TIGR01301         9 VASVAAGVQFGWALQLSLLTPYVQE-LGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRR-----RPFIAAGAA   82 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCCh-----HHHHHHHHH
Confidence            3444455566677777778887755 55665444 33466678889999999999995    8887     44433 344


Q ss_pred             HHHHHHHHHHhhhhh-----------------HHHHHHHHHHHHHHHhccCchhhhhhcccCCchh--hHHHHHHHHHHH
Q 014628          283 LGAISCLTAFCLSSL-----------------YGFLALFTVGELLVFATQAPVNYVCLHSVKPSLR--ALSMAISTVSIH  343 (421)
Q Consensus       283 ~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~g~~~~~~~  343 (421)
                      .....+.++....+.                 +..++...+..+..+...++..+++.|..|+++|  +.+.++.+...+
T Consensus        83 ~~~~~l~ll~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~  162 (477)
T TIGR01301        83 LVAFAVILIGFAADIGHLFGDNLDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMA  162 (477)
T ss_pred             HHHHHHHHHHhCchhhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHH
Confidence            343443333332221                 2233344455567777888899999999998754  578888866666


Q ss_pred             hhcccCcchhHHHh
Q 014628          344 IFGDVPSSPLVGVL  357 (421)
Q Consensus       344 ~~g~~~~~~~~g~l  357 (421)
                      . |+++++.+.+..
T Consensus       163 l-G~ilg~~~g~~~  175 (477)
T TIGR01301       163 I-GNVLGYAAGAYS  175 (477)
T ss_pred             H-HHHHHHHHHHHH
Confidence            5 888888766654

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=98.91  E-value=5.7e-07  Score=85.96  Aligned_cols=125  Identities=18%  Similarity=0.177  Sum_probs=101.6

Q ss_pred             chhhHHHHhhhh-cCCchHHHHHHHHHHHHHhhhhhhhh--------HHHHHHHHHHhhhhhhhhccchhhhhhccCCCC
Q 014628            6 VASPIFASLAKS-HNPFRLIGVGLSVWTFATAGCGSSFD--------FWSIAICRMLVGVGEASFISLAAPFIDDNAPVP   76 (421)
Q Consensus         6 i~~~~~g~l~Dr-~Grr~~~~~~~~~~~~~~~~~~~~~~--------~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~   76 (421)
                      +.++++|.++|+ +||++++.++.++..++.++.+++..        ....+++-.+..+|.|+.-|...+...|.++++
T Consensus        38 l~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~~~  117 (654)
T TIGR00926        38 LTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGHPLHDLLDLLGLALIALGTGGIKPCVSAFGGDQFEER  117 (654)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccccchHHHHHHHHHHHHHhhccccccCchhhhHhhcCcc
Confidence            467789999997 59999999999999999988776421        233566778888899999999999999999764


Q ss_pred             C---chhHHHHHHHHHHHHhhhHHHhHHhhhhcc-------hhHHHHHHHHHHHHHHHHHHHhc
Q 014628           77 Q---KTAWLSMFYMCIPTGVALGYVYGGVVGSHL-------NWRYAFWGEAILMLPFAVLAFVI  130 (421)
Q Consensus        77 ~---r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~-------~wr~~f~~~~~~~~~~~~~~~~~  130 (421)
                      +   |-+.+.++..+.++|..+++.+..++.+..       +|...|.+.++..++..++....
T Consensus       118 ~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF~i~~i~m~ia~lvf~~g  181 (654)
T TIGR00926       118 QLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYPLAFGVPAILMILALIVFMAG  181 (654)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHHHHHHHHHHHHHHHh
Confidence            3   667899999999999999999998887443       69999999988877766655443

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=98.91  E-value=1.9e-08  Score=87.61  Aligned_cols=167  Identities=16%  Similarity=0.157  Sum_probs=109.3

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhCCccchh-HHHhhhhHHHHHHhhhhhHHHhhhccccchhhHHHHHHHH
Q 014628          204 KVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATF  282 (421)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~  282 (421)
                      ++++...+.........+...... ..+.+.++.++.+. .+.+++.+.+.+.++..|.+.||+|.|     ++...+.+
T Consensus        14 ~~L~~S~~af~v~F~VW~l~s~l~-~~i~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drfGgR-----~~~~~s~~   87 (417)
T COG2223          14 RNLWLSTLAFDVGFMVWTLFSPLG-VFIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRFGGR-----KWTILSML   87 (417)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH-hhhccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcccCch-----HHHHHHHH
Confidence            444444443333333333333333 34447788887666 556888899999999999999999999     77777777


Q ss_pred             HHHHHHHHHHhhhh---hHHHHHHHHHHHHHHHhccCchhhhhhcccCCchhhHHHHHHHHHHHhhcccCcchhHHHhhh
Q 014628          283 LGAISCLTAFCLSS---LYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQD  359 (421)
Q Consensus       283 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~  359 (421)
                      +..+.++.......   .+.++++-.+.| ..+..+......++..+|+|++|.++|++ ...|. |..+...+.+++..
T Consensus        88 l~~IP~~~~~~a~~~~~~~~ll~~gll~G-~~GasFav~m~~~s~~fP~~~qG~AlGI~-g~GN~-G~av~q~~~P~v~~  164 (417)
T COG2223          88 LLLIPCLGLAFAVTYPSTWQLLVIGLLLG-LAGASFAVGMPNASFFFPKEKQGLALGIA-GAGNL-GVAVAQLVAPLVAV  164 (417)
T ss_pred             HHHHHHHHHHHHccCCchHHHHHHHHHHh-cccceehcccccccccCChhhhhHHHHHh-ccccc-cHHHHHHHHHHHHH
Confidence            76666655544432   224443333333 33455666777889999999999999999 46665 88888888888888


Q ss_pred             cccc--chhhhHHHHHHHHHHH
Q 014628          360 HVNN--WRKTTLALTSIFFLAA  379 (421)
Q Consensus       360 ~~g~--~~~~~~~~~~~~~~~~  379 (421)
                      ..|.  ++....+.....++..
T Consensus       165 ~~g~~~w~~~~~i~~~~l~v~~  186 (417)
T COG2223         165 AFGFLAWRNVAGIYVVALAIAA  186 (417)
T ss_pred             HHhhHHHHHHHHHHHHHHHHHH
Confidence            7662  5555555544444433

>PRK15075 citrate-proton symporter; Provisional

Probab=98.91  E-value=4.8e-08  Score=90.38  Aligned_cols=159  Identities=13%  Similarity=0.090  Sum_probs=100.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhCCccch-h-HHHhh-----hhHHHHHHhhhhhHHHhhhccccchhhHHH
Q 014628          205 VYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNAD-M-MFGGV-----TIVCGIVGTISGGFILDQMGATISNAFKLL  277 (421)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~-----~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~  277 (421)
                      ......+..++...-...+....|...++ ++.++.+ . ...+.     ..+...++.++.|++.||+|||     +.+
T Consensus        16 ~~~~~~~~~~~~~~d~~~~~~~~~~i~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr-----~~l   89 (434)
T PRK15075         16 AILRVTSGNFLEMFDFFLFGFYATAIAKT-FFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRVGRR-----KGL   89 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhchH-----HHH
Confidence            34445555666666677777778876665 4544322 1 21111     1222246788999999999999     777


Q ss_pred             HHHHHHHHHHHHHHHhhhhhHH--------HHHHHHHHHHHHHhccCchhhhhhcccCCchhhHHHHHHHHHHHhhcccC
Q 014628          278 SAATFLGAISCLTAFCLSSLYG--------FLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVP  349 (421)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~  349 (421)
                      ..+..+..+...+....++...        +++.-++.+++.+...+....++.|.+|+++|++++++.+...+. |..+
T Consensus        90 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~~~~~-g~~~  168 (434)
T PRK15075         90 IVTLSIMASGTLLIAFVPGYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGRKGFYTSWQSASQQV-AVVF  168 (434)
T ss_pred             HHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCcccchHHHHHHHHHHHH-HHHH
Confidence            7776666666655555554332        344445566666666666778899999999999999998655554 6666


Q ss_pred             cchhHHHhh--------hccccchhhhHHH
Q 014628          350 SSPLVGVLQ--------DHVNNWRKTTLAL  371 (421)
Q Consensus       350 ~~~~~g~l~--------~~~g~~~~~~~~~  371 (421)
                      ++.+.+.+.        +..| |+..|++.
T Consensus       169 g~~~g~~l~~~~~~~~~~~~g-Wr~~f~~~  197 (434)
T PRK15075        169 AALLGYLLNQWLSPAQMAEWG-WRIPFLIG  197 (434)
T ss_pred             HHHHHHHHHHhCCHHHHhccc-hHHHHHHH
Confidence            665555542        3333 76677653

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=98.89  E-value=1.3e-08  Score=92.83  Aligned_cols=122  Identities=10%  Similarity=-0.035  Sum_probs=93.7

Q ss_pred             ccchhhHHHHhhhhcCCchHHHHHHHHHHHHHhhhhh------hhhHHHHHHHHHHhhhhhhhhccchhhhhhccCCC-C
Q 014628            4 LLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGS------SFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPV-P   76 (421)
Q Consensus         4 ~~i~~~~~g~l~Dr~Grr~~~~~~~~~~~~~~~~~~~------~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~-~   76 (421)
                      ..++.++.|++.||+|+|+.+..+..+.++..+....      .++...+.....+.+++.+...+...+.+.+..++ +
T Consensus       257 ~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  336 (390)
T TIGR02718       257 VLLGCGGGAWLVRRAGLWRTFILGVGLAGSLALLWFAQAAFWLAPGIAVAWSCSAFGSLITGITSVAIYTAFMRFAGDGD  336 (390)
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccc
Confidence            3456788999999999999988877665333332221      22334445556666777777777788887777776 7


Q ss_pred             CchhHHHHHHHHHHHHhhhHHHhHHhhhhcchhHHHHHHHHHHHHHHHH
Q 014628           77 QKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAV  125 (421)
Q Consensus        77 ~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~wr~~f~~~~~~~~~~~~  125 (421)
                      ++++.++..+...++|..+||.++|.+.+..||+..|++.+++.++..+
T Consensus       337 ~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~~G~~~~f~~~~~~~l~a~~  385 (390)
T TIGR02718       337 QAGTDVTAVQSTRDLGELIASSIAGYLTDRFGYAGGFLSGTVLAVLAIL  385 (390)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHH
Confidence            8999999999999999999999999999999999999988876655443

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=98.88  E-value=5.6e-09  Score=88.78  Aligned_cols=124  Identities=6%  Similarity=-0.012  Sum_probs=96.6

Q ss_pred             chhhHHHHhhhhcCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhhhhhhhccchhhhhhccCCCCCchhHHHHH
Q 014628            6 VASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMF   85 (421)
Q Consensus         6 i~~~~~g~l~Dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~   85 (421)
                      -|.++.+++.||+|||+++..+.+++++..++...+.+-....+.-+..-+..++.+.+.+.|..|.+|.+-|+...|.-
T Consensus       396 PGlLIt~~iverlGRKkTMal~l~~f~iflfll~~c~~rn~~tvllf~arafisg~fqvaYvYtPEVyPTavRatgvGtc  475 (528)
T KOG0253|consen  396 PGLLITGVIVERLGRKKTMALSLILFGIFLFLLTTCKTRNAYTVLLFTARAFISGAFQVAYVYTPEVYPTAVRATGVGTC  475 (528)
T ss_pred             CchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHhchheEEEEecCcccchhhhhcchhhh
Confidence            47789999999999999999999999999998887765444444444444445566778899999999999999999999


Q ss_pred             HHHHHHHhhhHHHhHHhhhhcchhHHHHHHHHHHHHHHHHHHHhcc
Q 014628           86 YMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIK  131 (421)
Q Consensus        86 ~~~~~~G~~~g~~~~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~  131 (421)
                      +...-+|.++.|.++  +....+-..+..+.+...++.+++..++.
T Consensus       476 SsmaRIggI~~p~iA--~~~e~s~sl~i~vy~~~~ilagIavcffP  519 (528)
T KOG0253|consen  476 SSMARIGGIFSPVIA--MRAELSTSLPIFVYGALFILAGIAVCFFP  519 (528)
T ss_pred             hhHHhhhhhhhhHHH--HHhccceeehHHHHHHHHHHHHHHheeee
Confidence            999999999999998  33222344556666666666666666653

>TIGR00805 oat sodium-independent organic anion transporter

Probab=98.86  E-value=1.6e-08  Score=97.08  Aligned_cols=126  Identities=8%  Similarity=-0.056  Sum_probs=91.2

Q ss_pred             HHHHhhCCccchh-HHHhhhhHHHHHHhhhhhHHHhhhccccchhhHHHHHHHHHHHHHHHHHHhhh-------------
Q 014628          230 AGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLS-------------  295 (421)
Q Consensus       230 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------  295 (421)
                      -+++.++.+..+. .+.+...++..++.++.+++.||.+|+     +++..+.++.+++.++....+             
T Consensus        58 ~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~-----~~i~~g~ll~~lg~ll~alphf~~~~y~~~~~~~  132 (633)
T TIGR00805        58 TIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRP-----IVIGIGCAIMGLGSFLLSLPHFLSGRYSYSTTVS  132 (633)
T ss_pred             hhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcc-----eEEEecHHHHHHHHHHHhChHHhcCCcccccccc
Confidence            4456677775554 445677888999999999999999998     666555555555544443321             


Q ss_pred             --------------------------------------hhHHHHHHHHHHHHHHHhccCchhhhhhcccCCchhhHHHHH
Q 014628          296 --------------------------------------SLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAI  337 (421)
Q Consensus       296 --------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  337 (421)
                                                            ....+++.-++.|++.+..++....++.|.+|+++|+...++
T Consensus       133 ~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~~~~~i  212 (633)
T TIGR00805       133 STGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKNSPLYIGI  212 (633)
T ss_pred             ccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCCccccHHHHHH
Confidence                                                  122344566677777777778888999999999999999999


Q ss_pred             HHHHHHhhcccCcchhHHHhhhcc
Q 014628          338 STVSIHIFGDVPSSPLVGVLQDHV  361 (421)
Q Consensus       338 ~~~~~~~~g~~~~~~~~g~l~~~~  361 (421)
                      .+..... |..+|+.+.+++.+..
T Consensus       213 ~~~~~~i-G~~lG~llgg~l~~~~  235 (633)
T TIGR00805       213 LESIAVF-GPAFGYLLGSFCLQIY  235 (633)
T ss_pred             HHHHHHh-hhHHHHHHHHHHHhcc
Confidence            9655444 9899998888887643

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=98.84  E-value=2.3e-08  Score=88.76  Aligned_cols=128  Identities=11%  Similarity=0.153  Sum_probs=112.5

Q ss_pred             chhhHHHHhhhhcCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhhhhhhhccchhhhhhccCCCCCchhHHHHH
Q 014628            6 VASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMF   85 (421)
Q Consensus         6 i~~~~~g~l~Dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~   85 (421)
                      +.-.+..++.+|+|.|+.++++.++.++=.+++++++|.+.+.+.+.+.|+-.+........|+.+.+|+|-.++...+.
T Consensus       274 ~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~~~~~~~~~i~~~klLH~~e~~l~lva~fkYI~~~fd~rlsAt~y~v~  353 (412)
T PF01306_consen  274 LMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGSGFATNPWVISLIKLLHALEFPLLLVAAFKYITAHFDKRLSATLYLVG  353 (412)
T ss_dssp             HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-GGGHHHHHHHH
T ss_pred             HHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhHHHHHHHHH
Confidence            44567889999999999999999999999999999999999999999999999999999999999999998877888774


Q ss_pred             -HHHHHHHhhhHHHhHHhhhhcchhHHHHHHHHHHHHHHHHHHHhcccc
Q 014628           86 -YMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPL  133 (421)
Q Consensus        86 -~~~~~~G~~~g~~~~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p~  133 (421)
                       +.+..+|..+.+.++|.+.|+.|.+..|++.+.+.++..++..+.+++
T Consensus       354 ~~~~~~~~~~i~s~~~G~lyd~~G~~~tylimg~iv~~~~li~~f~l~~  402 (412)
T PF01306_consen  354 FQFAKQIGIIILSPLAGYLYDRIGFQHTYLIMGLIVLPFTLISAFTLKK  402 (412)
T ss_dssp             HTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS--
T ss_pred             HHHHHHHHHHHHhhhHHhhHhhcCcHHHHHHHHHHHHHHHHHheeeecC
Confidence             788999999999999999999999999999999988888888887754

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>TIGR00901 2A0125 AmpG-related permease

Probab=98.83  E-value=7.3e-08  Score=86.79  Aligned_cols=148  Identities=14%  Similarity=-0.007  Sum_probs=93.5

Q ss_pred             HHHHhhHHHHHhhCCccchhHHHhhhhHHHHHHhhhhhHHHhhh-----ccccchhhHHHHHHHHHHHHHHHHHHhh---
Q 014628          223 YSYWGPKAGYNIYHMSNADMMFGGVTIVCGIVGTISGGFILDQM-----GATISNAFKLLSAATFLGAISCLTAFCL---  294 (421)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~---  294 (421)
                      ...-.|.+.++ .+.+..+..+.....+...+ .++.|+++||+     |||+    .++..+.+..........+.   
T Consensus         7 ~~~~~~~~~~~-~g~s~~~~g~~~~~~~~~~~-~~~~g~~~Dr~~~~~~Grr~----~~l~~~~~~~~~~~~~l~~~~~~   80 (356)
T TIGR00901         7 VGNTLPYWLRS-KNVSLKTIGFFSLVGLPYSL-KFLWSPLVDTVYLPFFGRRR----SWLVLTQVLLLSLLLILSFLVPS   80 (356)
T ss_pred             HHhHHHHHHHH-cCCCHHHHHHHHHHHHHHHH-HHHHHHHHhcccCCCCCccH----HHHHHHHHHHHHHHHHHHcCCcc
Confidence            34456667665 46665555433322333333 88999999998     5551    33444444444443333333   


Q ss_pred             hhhHHHHHHHHHHHHHHHhccCchhhhhhcccCCchhhHHHHHHHHHHHhhcccCcchhHHHhhhcccc-------chhh
Q 014628          295 SSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNN-------WRKT  367 (421)
Q Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~g~-------~~~~  367 (421)
                      .+.+.......+.+.+.....++..+++.|.+|+++|+.+.++....... |.++++.+.+.+.+..+.       |+..
T Consensus        81 ~~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~-G~~~~~~l~~~l~~~~g~~~~~~~~wr~~  159 (356)
T TIGR00901        81 TDLPLLAGLAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRA-GMLLSGSLALVLASPEFANTGLITLWGYI  159 (356)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHH-HHHHHHHHHHHHhhhcccccccccccHHH
Confidence            23333444444555666666677788899999999999999999655555 989999898888877653       7777


Q ss_pred             hHHHHHHHHH
Q 014628          368 TLALTSIFFL  377 (421)
Q Consensus       368 ~~~~~~~~~~  377 (421)
                      |++.++..++
T Consensus       160 f~i~ai~~l~  169 (356)
T TIGR00901       160 FFWTALLILP  169 (356)
T ss_pred             HHHHHHHHHH
Confidence            7766655444

>TIGR00896 CynX cyanate transporter

Probab=98.82  E-value=1.1e-07  Score=85.51  Aligned_cols=141  Identities=12%  Similarity=0.104  Sum_probs=96.3

Q ss_pred             HHHhhHHHHHhhCCccchh-HHHhhhhHHHHHHhhhhhHHHhhhccccchhhHHHHHHHHHHHHHHHHHHhhhhhHHHHH
Q 014628          224 SYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLA  302 (421)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  302 (421)
                      ...+|.+.+ .++.+.... ...+...++..++.+..|++.||+++|     +.+..+.+......... ..++.+.+++
T Consensus        20 ~~~lp~l~~-~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r-----~~~~~~~~~~~~~~~~~-~~~~~~~l~~   92 (355)
T TIGR00896        20 GPLLPQIRS-ALGMSFSVAGLLTALPVLCFAVLAPLAPWLARRFGEE-----RSVAAGLLLIAAGILIR-SAPGTALLFA   92 (355)
T ss_pred             cccHHHHHH-HhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCch-----HHHHHHHHHHHHHHHHH-HhccHHHHHH
Confidence            345565554 467775554 445778889999999999999999998     66665555444444433 3455555555


Q ss_pred             HHHHHHHHHHhccCchhhhhhcccCCchhhHHHHHHHHHHHhhcccCcchhHHHhhhcccc-chhhhHHHHH
Q 014628          303 LFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNN-WRKTTLALTS  373 (421)
Q Consensus       303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~g~-~~~~~~~~~~  373 (421)
                      ..++.+++.+...+.......+.. +++|+++.++.+..... |..+++.+.+.+.+..+. |+..+...+.
T Consensus        93 ~~~~~g~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-g~~i~~~~~~~l~~~~~~~w~~~f~~~~~  162 (355)
T TIGR00896        93 GTALIGVGIAIINVLLPSLIKRDF-PQRVGLMTGLYSMALMG-GAALAAAATVPLAQHSGGHWQQALAWWAL  162 (355)
T ss_pred             HHHHHHHHHHHHhccchHHHHHhC-cchhhHHHHHHHHHHHH-HHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence            666667776666666666666666 46899999999766555 888888888888776543 6666555444

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=98.79  E-value=4.6e-08  Score=87.28  Aligned_cols=177  Identities=12%  Similarity=0.050  Sum_probs=129.2

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhC----Cccchh-HHHhhhhHHHHHHhhhhhHHHhhh-ccccchhhHH
Q 014628          203 EKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYH----MSNADM-MFGGVTIVCGIVGTISGGFILDQM-GATISNAFKL  276 (421)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~-~~~~~~~~~~  276 (421)
                      .|.++.+...-+.--+.+|++-..+..|+....+    .++.++ .+...+....-+..+++||++||+ |+|     +.
T Consensus        20 Pr~l~~if~vE~WERFsyYGmraiL~~Yl~~~~~~gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~-----~t   94 (498)
T COG3104          20 PRGLYLIFFVELWERFSYYGMRAILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTR-----RT   94 (498)
T ss_pred             CchHHHHHHHHHHHHHhhhhhHHHHHHHHHHhccccCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchh-----HH
Confidence            3455566666677788899998888888887777    665443 333333333345678899999996 777     77


Q ss_pred             HHHHHHHHHHHHHHHHhhh--hhHHHHHHHHHHHHHHHhccCchhhhhhcccCCc--hhhHHHHHHHHHHHhhcccCcch
Q 014628          277 LSAATFLGAISCLTAFCLS--SLYGFLALFTVGELLVFATQAPVNYVCLHSVKPS--LRALSMAISTVSIHIFGDVPSSP  352 (421)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~g~~~~~~~~~g~~~~~~  352 (421)
                      +..+.++..++.+.+....  ....+.+.+.+...+.+..=+....++.+.+|++  +|-.+.++..+..+. |+.++|.
T Consensus        95 I~lGail~~iGh~~L~~~~~~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~DprrD~gFt~fY~~iNi-Gsl~~p~  173 (498)
T COG3104          95 IVLGAILMAIGHLVLAISSVSGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDPRRDGGFTLFYMGINI-GSLIAPI  173 (498)
T ss_pred             HHHHHHHHHHHHHHHhccccccccHHHHHHHHHHhccccccccHHHHHHHhcCCCCcccCCCccEEEEEeeh-HHHHHHH
Confidence            7777777777666666553  4555666666677888888888888999999884  577777887777777 9999999


Q ss_pred             hHHHhhhccccchhhhHHHHHHHHHHHHHHHHhh
Q 014628          353 LVGVLQDHVNNWRKTTLALTSIFFLAAGIWFVGI  386 (421)
Q Consensus       353 ~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  386 (421)
                      +.+++.+..| |...|...++-...+.+.+...+
T Consensus       174 i~~~~~~~~g-~~~gF~~aavGm~~gl~~f~~~~  206 (498)
T COG3104         174 ITGLLAINYG-WHVGFGLAAVGMIIGLVIFLLGR  206 (498)
T ss_pred             HHHHHHHhhC-HHHHHHHHHHHHHHHHHHHHHcc
Confidence            9999999977 77888887777777766665443

>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]

Probab=98.79  E-value=2.3e-07  Score=81.60  Aligned_cols=99  Identities=19%  Similarity=0.211  Sum_probs=74.5

Q ss_pred             cchhhHHHHhhhh----cCCchHH-HHHHHHHHHHHhhhhhhhhHH-----------------HHHHHHHHhhhhhhhhc
Q 014628            5 LVASPIFASLAKS----HNPFRLI-GVGLSVWTFATAGCGSSFDFW-----------------SIAICRMLVGVGEASFI   62 (421)
Q Consensus         5 ~i~~~~~g~l~Dr----~Grr~~~-~~~~~~~~~~~~~~~~~~~~~-----------------~l~~~r~l~G~~~~~~~   62 (421)
                      .+.+|+.|..+||    |||||.+ ..+.+..+++.++..++.++.                 .+++.--+.-++.-...
T Consensus        81 ~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~~i~~~l~Lig~aaDig~~lgd~~~~~~~~rai~~~~lg~~LLD~A~n~~q  160 (498)
T KOG0637|consen   81 LLVQPLVGSASDRCTSRYGRRRPFILAGSLLIAVSLFLIGYAADIGLLLGDNERKPVKPRAIVLFILGFWLLDVANNTLQ  160 (498)
T ss_pred             ceecccccccccccccccccccchHHHhhHHHHHHHhhhhhHhhhhHHhcCCcccccchHHHHHHHHHhHHHHhhhhhhh
Confidence            4678899999996    7888865 455666677777777776543                 23333344444556777


Q ss_pred             cchhhhhhccCCCCCchh-HHHHHHHHHHHHhhhHHHhHHhh
Q 014628           63 SLAAPFIDDNAPVPQKTA-WLSMFYMCIPTGVALGYVYGGVV  103 (421)
Q Consensus        63 ~~~~~~i~~~~~~~~r~~-~~~~~~~~~~~G~~~g~~~~~~l  103 (421)
                      ..+-+++.|...++++.+ +++++.....+|..+|..+++++
T Consensus       161 gp~ra~L~Dl~~~d~~~~~Ans~f~~f~avGnvLGY~~g~y~  202 (498)
T KOG0637|consen  161 GPCRALLADLARGDAKKTRANSVFSFFMAVGNVLGYALGSYL  202 (498)
T ss_pred             hhHHHHHHHhccChhhhhccchhHHHHHHhcceeeeeccccc
Confidence            889999999988776666 99999999999999999998754

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=98.77  E-value=2.6e-08  Score=89.04  Aligned_cols=130  Identities=17%  Similarity=0.142  Sum_probs=117.4

Q ss_pred             ccccchhhHHHHhhhhcCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhhhhhhhccchhhhhhccCCCCCchhH
Q 014628            2 VGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAW   81 (421)
Q Consensus         2 lg~~i~~~~~g~l~Dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~   81 (421)
                      .|-++.-++.+++..|+|+-+++.+++.+..+=.+..+..+|.|..+...+++|+..+..+.+..+|+++..||+-|..+
T Consensus       417 ~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L~n~W~vLPieilqgit~aliWaa~~sY~s~vaPp~l~at~  496 (618)
T KOG3762|consen  417 AGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYSYLQNPWMVLPIEILQGITHALIWAAIISYASHVAPPGLRATA  496 (618)
T ss_pred             cchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHHHhcCchheeeHHHHHHHHHHHHHHHHHHHHHhhCCCcchHHH
Confidence            34566778899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHH-HHHHHHhhhHHHhHHhhhhcchhHHHHHHHHHHHHHHHHHHHhcc
Q 014628           82 LSMFY-MCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIK  131 (421)
Q Consensus        82 ~~~~~-~~~~~G~~~g~~~~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~  131 (421)
                      .++.+ ...++|--+|.++||.+.+.++-|..|.+.++.+++..++...+-
T Consensus       497 Q~l~~g~f~GlG~g~GslIGG~~v~~fg~~ttf~~~giAcl~~l~~~~~iq  547 (618)
T KOG3762|consen  497 QGLLQGIFHGLGKGLGSLIGGFVVERFGARTTFRIFGIACLVTLALFISIQ  547 (618)
T ss_pred             HHHHHHHhcccCcchhhhhhhhhheeehhHHHHHHHHHHHHHHHHHHHHhh
Confidence            99885 456889999999999999999999999999988877766655543

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=98.73  E-value=4.5e-08  Score=85.38  Aligned_cols=116  Identities=13%  Similarity=0.097  Sum_probs=103.8

Q ss_pred             ccchhhHHHHhhhhcCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhhhhhhhccchhhhhhccCCCCCchhHHH
Q 014628            4 LLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLS   83 (421)
Q Consensus         4 ~~i~~~~~g~l~Dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~   83 (421)
                      .++|++++|++.||+|.|+++..+++++.+.++..-+...-..+.++-.+.|...|+.+..+.++..+.+|+++-++.+|
T Consensus       301 A~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~~~~~~~~~~~~f~i~gll~g~s~G~~qA~SRSy~~~lvp~~k~~~fFg  380 (438)
T COG2270         301 AALGAIIAGFLDERFGSKPVLMIGLVILSIAALYLIFLEGELDFWILGLLVGTSLGGAQASSRSYLARLVPKGKEGRFFG  380 (438)
T ss_pred             HHHHHHHHHHHHHHhCCceeehHHHHHHHHHHHHHHHccccHHHHHHHHHHHHhcchHHHHHHHHHHHhCCCccccceee
Confidence            46789999999999999999999999999999998888888888889999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhHHHhHHhhhhcch-hHHHHHHHHHH
Q 014628           84 MFYMCIPTGVALGYVYGGVVGSHLN-WRYAFWGEAIL  119 (421)
Q Consensus        84 ~~~~~~~~G~~~g~~~~~~l~~~~~-wr~~f~~~~~~  119 (421)
                      +++...-.+..+||.+.+.+.+..| -|..+....++
T Consensus       381 lyaltgra~S~~gp~lv~v~t~iTg~~r~g~~~i~vl  417 (438)
T COG2270         381 LYALTGRAASFLGPFLVAVITQITGSSRAGVLSIIVL  417 (438)
T ss_pred             hhhhhhhHHHHHHHHHHHHHHHHhcchhhHHHHHHHH
Confidence            9999999999999999999887543 56666555444

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=98.71  E-value=1.4e-07  Score=85.20  Aligned_cols=127  Identities=17%  Similarity=0.158  Sum_probs=102.8

Q ss_pred             chhhHHHHhhhhcCCchHHHHHHHHHHHHHhhhhhh-hhHHHHHH----HHHHhhhhhhhhccchhhhhhccCCCCCchh
Q 014628            6 VASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSS-FDFWSIAI----CRMLVGVGEASFISLAAPFIDDNAPVPQKTA   80 (421)
Q Consensus         6 i~~~~~g~l~Dr~Grr~~~~~~~~~~~~~~~~~~~~-~~~~~l~~----~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~   80 (421)
                      ..-...+++..|+|.|+++.++.+.+++=..+.+.. ++.+...+    ...++|+..+..+.++..++.+..|++.|++
T Consensus       258 ~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~a~~~~~~~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~~at  337 (400)
T PF03825_consen  258 PFFFFSGRFLKRFGIKWLLLLALVAYAVRWLLYAYFSDPWPFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPELRAT  337 (400)
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccchHH
Confidence            344578999999999999999999999988888877 55444333    3567999999999999999999999999999


Q ss_pred             HHHHHHH-HHHHHhhhHHHhHHhhhhcch------hHHHHHHHHHHHHHHHHHHHhccc
Q 014628           81 WLSMFYM-CIPTGVALGYVYGGVVGSHLN------WRYAFWGEAILMLPFAVLAFVIKP  132 (421)
Q Consensus        81 ~~~~~~~-~~~~G~~~g~~~~~~l~~~~~------wr~~f~~~~~~~~~~~~~~~~~~p  132 (421)
                      +.++++. ..++|..+|..++|++.+++|      |...+.+.+++.++..++.+++.+
T Consensus       338 ~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~~~~~~~~~~~v~a~~~~~~~~~f~~~fk  396 (400)
T PF03825_consen  338 AQGLYSALSFGLGGAIGSLIGGWLYDAFGARGMFDWSAVFLVFAVMALVILVLFVILFK  396 (400)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            9999876 468999999999999998765      555667777666666666555543

>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]

Probab=98.71  E-value=9e-08  Score=84.38  Aligned_cols=120  Identities=21%  Similarity=0.338  Sum_probs=99.0

Q ss_pred             cccchhhHHHHhhhhcCCchHHHHHHHHHHHHHhhhhhhhh--HHHHHHHHHHhhhhhhhhccchhhhhhccCCC-CCch
Q 014628            3 GLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFD--FWSIAICRMLVGVGEASFISLAAPFIDDNAPV-PQKT   79 (421)
Q Consensus         3 g~~i~~~~~g~l~Dr~Grr~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~-~~r~   79 (421)
                      +..+++++.|.++||+|||+.+..+.....++.+++++..+  .+.+++.|+++|++.+...+...+++.|++|+ ++|+
T Consensus        51 ~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  130 (338)
T COG0477          51 GYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAPNVGLALLLILRLLQGLGGGGLLPVASALLSEWFPEATERG  130 (338)
T ss_pred             HHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCchhHHH
Confidence            34566689999999999999888888776666677777766  89999999999999999999999999999998 6799


Q ss_pred             hHHHHHHH-HHHHHhhhHHHhHHhhhhc--chhHHHHHHHHHHHHH
Q 014628           80 AWLSMFYM-CIPTGVALGYVYGGVVGSH--LNWRYAFWGEAILMLP  122 (421)
Q Consensus        80 ~~~~~~~~-~~~~G~~~g~~~~~~l~~~--~~wr~~f~~~~~~~~~  122 (421)
                      ...+.... ...+|..+++.+++.+...  .+||+.|.........
T Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (338)
T COG0477         131 LAVGLVTLGAGALGLALGPLLAGLLLGALLWGWRAAFLLAALLGLL  176 (338)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence            99999888 5888999999887776654  5799977776655433

>PRK09848 glucuronide transporter; Provisional

Probab=98.67  E-value=8.8e-08  Score=89.05  Aligned_cols=107  Identities=10%  Similarity=0.064  Sum_probs=89.5

Q ss_pred             cccchhhHHHHhhhhcCCchHHHHHHHHHHHHHhhhhhhh--hHHHHHHHHHHhhhhhhhhccchhhhhhccCCCC----
Q 014628            3 GLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSF--DFWSIAICRMLVGVGEASFISLAAPFIDDNAPVP----   76 (421)
Q Consensus         3 g~~i~~~~~g~l~Dr~Grr~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~----   76 (421)
                      +..++.++++++.||+|+|+++.++.++..++.++..+.+  +++.+++..++.|+|.+...+...++.+|..|.+    
T Consensus       276 ~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~  355 (448)
T PRK09848        276 GTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFWVSVWSLPVALVALAIASIGQGVTMTVMWALEADTVEYGEYLT  355 (448)
T ss_pred             HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhh
Confidence            3456788999999999999999999998888877776654  5677777888999999999999999999888754    


Q ss_pred             ---CchhHHHHHHHHHHHHhhhHHHhHHhhhhcchh
Q 014628           77 ---QKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNW  109 (421)
Q Consensus        77 ---~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~w  109 (421)
                         ++|..++.++....+|..+|+.+.+.+.+..|+
T Consensus       356 g~r~~G~~~~~~~~~~klg~aig~~i~g~~l~~~G~  391 (448)
T PRK09848        356 GVRIEGLTYSLFSFTRKCGQAIGGSIPAFILGLSGY  391 (448)
T ss_pred             CccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence               358999999999999999999999887654443

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.67  E-value=4.3e-07  Score=82.52  Aligned_cols=130  Identities=12%  Similarity=-0.037  Sum_probs=102.2

Q ss_pred             cchhhHHHHhhhhcCCchHHHHHHHHHHHHHhhhhhhh---hHH------HHHHHHHHhhhhhh-hhccchhhhhhccCC
Q 014628            5 LVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSF---DFW------SIAICRMLVGVGEA-SFISLAAPFIDDNAP   74 (421)
Q Consensus         5 ~i~~~~~g~l~Dr~Grr~~~~~~~~~~~~~~~~~~~~~---~~~------~l~~~r~l~G~~~~-~~~~~~~~~i~~~~~   74 (421)
                      .+..+++..+.||+|||+.++.+..+..+..+++....   +..      ..+++.++..++.+ +..|...-+.+|.+|
T Consensus       319 ~~~t~~~~~lid~~gRRpLll~~~~~~~~~~~~~~~~~~l~~~~~~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~  398 (485)
T KOG0569|consen  319 LLSTLVSPFLIDRLGRRPLLLISLSLMAVALLLMSIALFLSNSFGSWLSYLCIAAIFLFIISFAIGPGPIPWFIGAELFP  398 (485)
T ss_pred             HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCC
Confidence            46778899999999999999999999988888776542   111      12334444443333 246778889999999


Q ss_pred             CCCchhHHHHHHHHHHHHhhhHHHhHHhhhhcchhHHHHHHHHHHHHHHHHHHHhcccccc
Q 014628           75 VPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQL  135 (421)
Q Consensus        75 ~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p~~~  135 (421)
                      ++.|..++++.....-+...+-......+.+..|- +.|++..+++....+..++.+||++
T Consensus       399 ~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g~-~~filF~i~~~~~~i~~~~~lPETk  458 (485)
T KOG0569|consen  399 QSARSAAQSVATAVNWLSNFIVGFAFPPLQNVIGP-YVFILFVIPLAIFLIYLYRYLPETK  458 (485)
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHHHHHhCcccC
Confidence            99999999999999998888877777777777665 7888899999999999999999964

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.65  E-value=2.9e-07  Score=84.43  Aligned_cols=136  Identities=19%  Similarity=0.298  Sum_probs=109.9

Q ss_pred             HHHhhhhHHHHHHhhhhhHHHhhhccccchhhHHHHHHHHHHHHHHHHHHhhh--hhHHHHHHHHHHHHHHHhccCchhh
Q 014628          243 MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLS--SLYGFLALFTVGELLVFATQAPVNY  320 (421)
Q Consensus       243 ~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~  320 (421)
                      .+.+....+.+++.+.++++.||+|.|     +++..+.++..+..++.....  +.+.+++.=++.|++.+..++....
T Consensus        77 ~i~ss~~~G~i~~~iP~g~l~~k~G~r-----~v~~~~~~~sa~~t~l~P~aa~~~~~~~~~~R~lqGl~~g~~~pa~~~  151 (466)
T KOG2532|consen   77 LIFSSFFWGYILGQIPGGYLADKFGAR-----RVFFISGLISALLTLLTPLAASIGFYLLLVLRFLQGLGQGVLFPAIGS  151 (466)
T ss_pred             HHHHHHHHHHHHHHcCcHHHHHHcCch-----HHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHhHHHHhHHHhhhhc
Confidence            445667889999999999999999999     788777777777766655443  3345567777888899999999999


Q ss_pred             hhhcccCCchhhHHHHHHHHHHHhhcccCcchhHHHhhhccccchhhhHHHHHHHHHHHHHHHH
Q 014628          321 VCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFFLAAGIWFV  384 (421)
Q Consensus       321 ~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~  384 (421)
                      +..+-.|+++|++..++.....+. |.+++-++.|++.+...+|+..|++.+.+.++..++++.
T Consensus       152 i~~~W~P~~Ers~~~ail~~g~q~-g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~  214 (466)
T KOG2532|consen  152 ILAKWAPPNERSTFIAILTAGSQL-GTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFILWFL  214 (466)
T ss_pred             eeeeECCHHHHHHHHHHHHHHHHH-HHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999655555 888888899999998445989999988887666665553

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=98.64  E-value=2.2e-06  Score=74.57  Aligned_cols=128  Identities=11%  Similarity=0.045  Sum_probs=101.6

Q ss_pred             hhHHHHHhhCCccchh-HHHhhhhHHHHHHhhhhhHHHhhhccccchhhHHHHHHHHHHHHHHHHHH---hhhhhHHHHH
Q 014628          227 GPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAF---CLSSLYGFLA  302 (421)
Q Consensus       227 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~  302 (421)
                      +-..+++.++.+..+. .+......+..+.++..+++.+|++.|     +-++.+..+.++.+.+..   ...+...++.
T Consensus        35 Lip~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~gyk-----~gi~lgL~l~avg~~lF~pAa~~~~y~~FL~  109 (422)
T COG0738          35 LIPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYK-----AGIVLGLLLYAVGAALFWPAASSKSYGFFLV  109 (422)
T ss_pred             hHHHHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhH-----HHHHHHHHHHHHHHHHHhhhhhhhhHHHHHH
Confidence            3345677888887665 444667788899999999999999999     778888888777777665   3345666777


Q ss_pred             HHHHHHHHHHhccCchhhhhhcccCCchhhHHHHHHHHHHHhhcccCcchhHHHhhhc
Q 014628          303 LFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDH  360 (421)
Q Consensus       303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~  360 (421)
                      ..++.+.+.+......+.++...-+++..+.-+.+...+... |++++|.+.+.+..+
T Consensus       110 ~lFila~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~l-Ga~~gp~~g~~lils  166 (422)
T COG0738         110 ALFILASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGL-GAILGPLLGSSLILS  166 (422)
T ss_pred             HHHHHHhhhHHHHhccchHHHHhCCchhHHHHHHHHHHhhhh-HHHHHHHHHHHHHHh
Confidence            778888888888888999999998888888888888655555 999999999998873

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=98.63  E-value=1.3e-07  Score=89.80  Aligned_cols=129  Identities=14%  Similarity=0.118  Sum_probs=108.7

Q ss_pred             HHHhhhhHHHHHHhhhhhHHHhhhccccchhhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhccCchhhhh
Q 014628          243 MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVC  322 (421)
Q Consensus       243 ~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (421)
                      ...++..++..+|.++.|.++||+|||     +.+..+.++..++.+...+.++.+.+++.=++.|++.+........+.
T Consensus       122 ~~~s~~~~G~~vG~~i~g~lsD~~GRk-----~~~~~~~~~~~i~~~~~a~a~~~~~~~~~Rfl~G~~~~~~~~~~~~~~  196 (521)
T KOG0255|consen  122 LGQSLFFLGVLVGSLIFGPLSDRFGRK-----PVLLVSLLLFIIFGILTAFAPNYWMFLIFRFLSGFFGSGPLTVGFGLV  196 (521)
T ss_pred             HHHHHHHHHHHHHHhhheehHhhcccH-----HHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhccchhHHhHhhh
Confidence            344777889999999999999999999     888888888888888888899999999999999999999999999999


Q ss_pred             hcccCCchhhHHHHHHHHHHHhhcccCcchhHHHhhhccccchhhhHHHHHHHHHHHHH
Q 014628          323 LHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFFLAAGI  381 (421)
Q Consensus       323 ~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~  381 (421)
                      .|.+++++|+.+..+ ...... ++..++...+++..   +|+..+++.........+.
T Consensus       197 ~E~~~~~~R~~~~~~-~~~~~~-~~~~~~~~~a~~~~---~Wr~~~~~~~~~~~~~~~~  250 (521)
T KOG0255|consen  197 AEIVSPKQRGLALTL-GGFFFV-GGLMLPAGAAYITR---DWRWLFWIISIPSGLFLLL  250 (521)
T ss_pred             eeecCcchhhHHHHH-HHHHHH-HHHHHHHHHHHHHh---hHHHHHHHHHHHHHHHHHH
Confidence            999999999999999 566666 55667878888877   4777777766665554444

>TIGR01272 gluP glucose/galactose transporter

Probab=98.62  E-value=2.2e-07  Score=81.44  Aligned_cols=114  Identities=11%  Similarity=0.051  Sum_probs=91.5

Q ss_pred             ccccchhhHHHHhhhhcCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhhhhhhhccchhhhhhccCCCCCchhH
Q 014628            2 VGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAW   81 (421)
Q Consensus         2 lg~~i~~~~~g~l~Dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~   81 (421)
                      .++.+|.+..+++.||+|+||++.++..+..++.++....++...+ ..-++.|++.+..+|...+...+..|++ .+++
T Consensus       189 ~~~~iGr~~~~~l~~r~g~~~~l~~~~~l~~~~~~l~~~~~~~~~~-~~~~l~g~~~s~i~P~~~s~a~~~~~~~-~~~a  266 (310)
T TIGR01272       189 GGAMVGRFIGSAVMPMISQGRYLAFNAFLAVLLSIGAALTHGYVAM-WFVLALGLFNSIMFPTIFSLALNALGRH-TSQG  266 (310)
T ss_pred             HHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHcCCHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhhhh-hhhh
Confidence            3567899999999999999999988888888877666655544333 3556889999999999999998888764 5566


Q ss_pred             HHHHHHHHHHHhhhHHHhHHhhhhcchhHHHHHHHHH
Q 014628           82 LSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAI  118 (421)
Q Consensus        82 ~~~~~~~~~~G~~~g~~~~~~l~~~~~wr~~f~~~~~  118 (421)
                      .++. ....+|..++|.+.|.+.|..|.+..|++..+
T Consensus       267 sai~-~~~~~Gg~i~P~l~G~lad~~g~~~a~~v~~~  302 (310)
T TIGR01272       267 SGIL-CLAIVGGAIVPLLQGSLADCLGIQLAFALPVP  302 (310)
T ss_pred             HHHH-HHHHhcchHHHHHHHHHHHhccchHHHHHHHH
Confidence            6765 56678999999999999998899998885543

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>PRK09669 putative symporter YagG; Provisional

Probab=98.61  E-value=1.2e-06  Score=81.50  Aligned_cols=149  Identities=17%  Similarity=0.033  Sum_probs=91.8

Q ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHhhCCccchhHH-HhhhhHHHHHHhhhhhHHHhhhccccchhhHHHHHHHHHHHHHH
Q 014628          210 VLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADMMF-GGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISC  288 (421)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~  288 (421)
                      .+..+..+.....+..|++.|+.+..+.++..... ..+.-+...+..++.|+++||.+.|..++++.+..+....++..
T Consensus        15 g~g~~~~~~~~~~~~~~l~~~~t~~~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~   94 (444)
T PRK09669         15 GLGDTACNLVWQTVMLFLAYFYTDVFGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVC   94 (444)
T ss_pred             cchhhhhhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHH
Confidence            33344445556667788999999999999765533 35566788899999999999966554444466655544444444


Q ss_pred             HHHHhhhh------hHHHHHHHHHHHHHHHhccCchhhhhhcccCC-chhhHHHHHHHHHHHhhcccCcchhHHHhhh
Q 014628          289 LTAFCLSS------LYGFLALFTVGELLVFATQAPVNYVCLHSVKP-SLRALSMAISTVSIHIFGDVPSSPLVGVLQD  359 (421)
Q Consensus       289 ~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~  359 (421)
                      .+....++      .....+...+...+......+..++..+..++ ++|.+..+........ |..+++.+...+..
T Consensus        95 ~l~f~~p~~~~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~~t~~~~eR~~l~~~r~~~~~~-G~~i~~~~~~pl~~  171 (444)
T PRK09669         95 LLTFYTPDFGATGKIIYACVTYILLSLVYTAINVPYCAMPGAITNDPRERHSLQSWRFALSFI-GGLIVSVIALPLVD  171 (444)
T ss_pred             HHHHhCCCCCcchHHHHHHHHHHHHHHHHHhhcchHHHhHHHhcCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence            33333321      22333334445555656666777777776644 7888887777444444 66666554444443

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=98.61  E-value=5e-06  Score=69.16  Aligned_cols=127  Identities=10%  Similarity=0.066  Sum_probs=93.2

Q ss_pred             cccchhhHHHHhhhhcCCchHHHHHHHHHHHHHhhhhhh-------hhHHHHHHHHHHhhhhhhhhccchhhhhhccCCC
Q 014628            3 GLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSS-------FDFWSIAICRMLVGVGEASFISLAAPFIDDNAPV   75 (421)
Q Consensus         3 g~~i~~~~~g~l~Dr~Grr~~~~~~~~~~~~~~~~~~~~-------~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~   75 (421)
                      |..+ +++.|.+.|++|++.++.+|.+...+|..+...+       .++|.+.+..++.|.+.+....++.....+.+|.
T Consensus        49 G~~~-G~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~~~~i~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP~  127 (250)
T PF06813_consen   49 GSYF-GILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAVSGRIPSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFPR  127 (250)
T ss_pred             Hhhc-cHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCccCccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCcc
Confidence            4444 4788999999999999999999999988876543       4678888888999988887777777777788985


Q ss_pred             CCchhHHHHHHHHHHHHhhhHHHhHHhhhhcchhHHHHHHHHHHHHHHHHHHHhcc
Q 014628           76 PQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIK  131 (421)
Q Consensus        76 ~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~  131 (421)
                       +||++.++.-...+++..+-..+...+.+...-+..+++...+.++..+..++..
T Consensus       128 -~RG~vvgilk~~~GLSaai~t~i~~~~f~~~~~~fll~la~~~~~v~l~~~~~vr  182 (250)
T PF06813_consen  128 -SRGTVVGILKGFFGLSAAIFTQIYSAFFGDDPSSFLLFLAVLPAVVCLVAMFFVR  182 (250)
T ss_pred             -ccCceehhhhHHHHhHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHhhhee
Confidence             6999999999999998877666665555443334444444334444444444443

>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions

Probab=98.60  E-value=7.8e-05  Score=68.69  Aligned_cols=229  Identities=13%  Similarity=0.126  Sum_probs=130.5

Q ss_pred             cchhhHHHHhhhhcCCchHHHHHHHHHHHHHhhhhhh---------h----------------------hHHHHHHHHHH
Q 014628            5 LVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSS---------F----------------------DFWSIAICRML   53 (421)
Q Consensus         5 ~i~~~~~g~l~Dr~Grr~~~~~~~~~~~~~~~~~~~~---------~----------------------~~~~l~~~r~l   53 (421)
                      .+...+..+++|+++|.+++-+....+.....+.++.         +                      +.|.+.+.-+.
T Consensus        73 ~~f~~~y~kl~n~~s~~~lFy~~~~~F~~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~~~i~~~~~Wt~slfYv~  152 (491)
T PF03219_consen   73 ILFTILYSKLSNRLSREKLFYIIIIPFLGFFALFAFVLYPNRDILHPDAFADKLLAILPPGFKGFIAMFRNWTFSLFYVM  152 (491)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhhchhhcCCCHHHHHhhhhccchHHHHHHHHHHHHHHHHHHH
Confidence            3456778999999999999887777776666665542         0                      11222222222


Q ss_pred             hhhhhhhhcc-chhhhhhccCCCCCchhHHHHHHHHHHHHhhhHHHhHHhhhh---------cchhHHHHHHHHHHHHHH
Q 014628           54 VGVGEASFIS-LAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGS---------HLNWRYAFWGEAILMLPF  123 (421)
Q Consensus        54 ~G~~~~~~~~-~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~---------~~~wr~~f~~~~~~~~~~  123 (421)
                      .-+-.....+ .-..+.+|.++.+|-.|..+++..+.++|.++++.+...+.+         ...|...+.......++.
T Consensus       153 aElwgsvvlSlLFW~fAN~itt~~eAKRfYpl~g~ganigli~sG~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~v~~~  232 (491)
T PF03219_consen  153 AELWGSVVLSLLFWGFANEITTVEEAKRFYPLFGLGANIGLIFSGQLTSYFSSFLRKSLPAGVDAWELSLNSLMGIVLIL  232 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccHhHHHHHHHHHHHHH
Confidence            2222233333 356788999999999999999999999999999988888776         224654332222111111


Q ss_pred             HHHH---HhcccccccccCCccccchhhhhhcccccccccCCcccccccchhhhhhhccccchhhhhhhhhhhhhhhHHh
Q 014628          124 AVLA---FVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVL  200 (421)
Q Consensus       124 ~~~~---~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (421)
                      .++.   .....+....  +++..+..                           ..++++       +......++++.+
T Consensus       233 g~~i~~~~~~~~~~vl~--~~~~~~~~---------------------------~~~kk~-------k~k~s~~es~k~l  276 (491)
T PF03219_consen  233 GIVIILLYRYMNKNVLT--DPRFYPSA---------------------------KKKKKK-------KPKMSLKESFKLL  276 (491)
T ss_pred             HHHHHHHHHHHHHHccC--ccccchhh---------------------------hccccc-------CCCccHHHHHHHH
Confidence            1111   1111111000  00000000                           000000       1112334678889


Q ss_pred             hcchhHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhCCccchh----HHHhhhhHHHHHHhhhhhHHHhhhccc
Q 014628          201 LQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM----MFGGVTIVCGIVGTISGGFILDQMGAT  269 (421)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~g~l~d~~~~~  269 (421)
                      +++|.+..+.+...+++...+.+..-.....++.+..+..-.    .+....++..++..++++.+.+|+|-+
T Consensus       277 ~kS~yL~~Ia~lvi~Ygi~inLvE~~wK~~lk~~~~~~~~ysafmG~~~~~tGivtii~~~l~~~iir~~GW~  349 (491)
T PF03219_consen  277 LKSKYLLCIALLVIAYGISINLVEVVWKSQLKQLYPDPNDYSAFMGKFSSWTGIVTIIMMFLSSNIIRRFGWR  349 (491)
T ss_pred             HhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence            999999988888877777776666555555555554332111    222344455555567778888888876

One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane

>PRK11462 putative transporter; Provisional

Probab=98.59  E-value=2.7e-06  Score=79.17  Aligned_cols=152  Identities=13%  Similarity=0.035  Sum_probs=99.7

Q ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHhhCCccchhHH-HhhhhHHHHHHhhhhhHHHhhhccccchhhHHHHHHHHHHHHHH
Q 014628          210 VLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADMMF-GGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISC  288 (421)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~  288 (421)
                      .+.-+..+........|+..|+.+..+.++..... ..+.-+...+.-++.|+++||...|..+++..+..+....++.+
T Consensus        15 g~g~~~~~~~~~~~~~~l~~fyt~~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~   94 (460)
T PRK11462         15 GMGDAASHIIFDNVMLYMMFFYTDIFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVC   94 (460)
T ss_pred             ccchhhhhHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHH
Confidence            34444555666777788999999999998655533 34555777888999999999876655555566666655555554


Q ss_pred             HHHHhhhh------hHHHHHHHHHHHHHHHhccCchhhhhhcccCC-chhhHHHHHHHHHHHhhcccCcchhHHHhhhcc
Q 014628          289 LTAFCLSS------LYGFLALFTVGELLVFATQAPVNYVCLHSVKP-SLRALSMAISTVSIHIFGDVPSSPLVGVLQDHV  361 (421)
Q Consensus       289 ~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~  361 (421)
                      .+++..+.      .....+..++...+......+..++..+..++ ++|++.++........ |..+++.+...+.+..
T Consensus        95 ~llf~~p~~s~~~~~~y~~~~~~~~~~~~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~i-G~~~~~~~~~plv~~~  173 (460)
T PRK11462         95 VLAYSTPDLSMNGKMIYAAITYTLLTLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATA-GGMLSTVLMMPLVNLI  173 (460)
T ss_pred             HHHHhCCCCCcchHHHHHHHHHHHHHHHHHHHhccHHHHHHHhcCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHh
Confidence            44443321      22334444556677777778888888888775 7999999988544444 7666666654444443


Q ss_pred             c
Q 014628          362 N  362 (421)
Q Consensus       362 g  362 (421)
                      |
T Consensus       174 g  174 (460)
T PRK11462        174 G  174 (460)
T ss_pred             C
Confidence            3

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.57  E-value=6.2e-07  Score=82.53  Aligned_cols=135  Identities=20%  Similarity=0.172  Sum_probs=107.1

Q ss_pred             HHHhhhhHHHHHHhhhhhHHHhhhccccchhhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhccCchhhhh
Q 014628          243 MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVC  322 (421)
Q Consensus       243 ~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (421)
                      ...++..++.+++.+.++.+.||++-.     +.+..+.+.-.....+....++.+.+++.-++.|++.+..+|....++
T Consensus        85 ~~~t~F~v~Yii~~~p~~~L~~r~~ls-----~~l~~~~~~w~~~~~~~~~~~s~~~~ialr~llGl~es~~wP~~~~~l  159 (495)
T KOG2533|consen   85 VLDTVFYVGYIIGQFPSGLLGDRFPLS-----KGLSVSGILWGLFGFLTAAVHSFPGLIALRFLLGLFESGGWPGVVAIL  159 (495)
T ss_pred             hHHHHHHHHHHHHHhhHHHHHHhCChH-----HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcccchHHHHHH
Confidence            344778899999999999999999955     666666666555555555578889999999999999999999999999


Q ss_pred             hcccCCchhhHHHHHHHHHHHhhcccCcchhHHHhhh-----ccccchhhhHHHHHHHHHHHHHHH
Q 014628          323 LHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQD-----HVNNWRKTTLALTSIFFLAAGIWF  383 (421)
Q Consensus       323 ~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~-----~~g~~~~~~~~~~~~~~~~~~~~~  383 (421)
                      ..-+.+++|+.-+|+.+...+. |+++|+.+...+..     ...+|++.|++-+++.+...++.+
T Consensus       160 g~wy~~~e~g~r~~~~~a~~~~-g~i~ggliA~g~~~~~~~~~~~gW~~~FiI~G~i~~~~gi~~f  224 (495)
T KOG2533|consen  160 GNWYGKSERGLRMGIWYASASL-GNIFGGLIAYGVFKLNGSGGLAGWRWLFIIEGVITLVLGIVVF  224 (495)
T ss_pred             HhhcChhhhhhhHHHHHHhcch-hhHHHHHHHHHhhhhcCCCCcCCceeehhHHHHHHHHHHheEE
Confidence            9999999999999999766555 88888877766532     123588899988877766665544

>PRK10429 melibiose:sodium symporter; Provisional

Probab=98.57  E-value=2.1e-06  Score=80.35  Aligned_cols=147  Identities=8%  Similarity=-0.001  Sum_probs=91.5

Q ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHhhCCccchhH-HHhhhhHHHHHHhhhhhHHHhhhccccchhhHHHHHHHHHHHHHH
Q 014628          210 VLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADMM-FGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISC  288 (421)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~  288 (421)
                      .+..+..+.....+..|++.|+.+..+.++.... +..+.-+...+..++.|+++||...|..++++.+..+....++.+
T Consensus        12 g~g~~~~~~~~~~~~~~l~~yyt~v~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g~i~~~i~~   91 (473)
T PRK10429         12 GFGAFGKDFAIGIVYMYLMYYYTDVVGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWILIGTLANSVVL   91 (473)
T ss_pred             ccchhHHhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHhhhhHHHHHHH
Confidence            3444555666777788899999999898865553 335566778889999999999653322222255555555555554


Q ss_pred             HHHHhhhh------hHHHHHHHHHHHHHHHhccCchhhhhhcccC-CchhhHHHHHHHHHHHhhcccCcchhHHHh
Q 014628          289 LTAFCLSS------LYGFLALFTVGELLVFATQAPVNYVCLHSVK-PSLRALSMAISTVSIHIFGDVPSSPLVGVL  357 (421)
Q Consensus       289 ~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l  357 (421)
                      .+++..++      .....+..++...+......+..++..+..+ +++|.+..+......+. |+.+.+.+...+
T Consensus        92 ~llf~~p~~~~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~lt~~~~eR~~l~~~~~~~~~i-g~~~~~~~~~~~  166 (473)
T PRK10429         92 FLLFSAHLFEGTAQYVFVCVTYILWGMTYTIMDIPFWSLVPTLTLDKREREQLVPYPRFFASL-AGFVTAGFTLPF  166 (473)
T ss_pred             HHHHcCCCCCccHHHHHHHHHHHHHHHHHHHHcchHHhhhHHhCCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence            44433221      1223334445566677777788888888774 58999988885444444 544444443333

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=98.52  E-value=2e-06  Score=79.98  Aligned_cols=149  Identities=17%  Similarity=0.165  Sum_probs=107.8

Q ss_pred             HhhHHHHHhhCCccc-hhHHHhhhhHHHHHHhhhhhHHHhhhccccchhhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Q 014628          226 WGPKAGYNIYHMSNA-DMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALF  304 (421)
Q Consensus       226 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  304 (421)
                      +.+.+.+ .++.+.. .....++......+..++.+.+.||+|.|     ...+.+.++...++++..+..+.+.+++..
T Consensus        68 ~~~~~~~-~f~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~rfg~R-----~v~i~G~~v~~~g~~lssF~~~i~~l~lt~  141 (509)
T KOG2504|consen   68 LFEELMD-YFGSSSSQIAWIGSLLLGVYLLAGPLVSALCNRFGCR-----TVMIAGGLVAALGLLLSSFATSLWQLYLTF  141 (509)
T ss_pred             hHHHHHH-HhCCCccHHHHHHHHHHHHHHHhccHHHHHHhhcCch-----HHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence            3344433 3444433 34555677777788889999999999999     888888888888888888888876655544


Q ss_pred             -HHHHHHHHhccCchhhhhhcccCCchhhHHHHHHHHHHHhhcccCcchhHHHhhhccccchhhhHHHHHHHHHHHHHHH
Q 014628          305 -TVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFFLAAGIWF  383 (421)
Q Consensus       305 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~  383 (421)
                       ++.|++.+..+.+...++. .+.+++|+.++|+.....+. |.++-|.+.-.+.+..| |+..++..+.+.+-......
T Consensus       142 gvi~G~G~~~~~~paiviv~-~YF~kkR~lA~Gia~~GsG~-G~~~~~~l~~~l~~~~G-~r~~~l~~~~~~l~~~~~~~  218 (509)
T KOG2504|consen  142 GVIGGLGLGLIYLPAVVILG-TYFEKKRALATGIAVSGTGV-GTVVFPPLLKYLLSKYG-WRGALLIFGGISLNVLVAGA  218 (509)
T ss_pred             HHHhhccchhhhcchhhhhh-hHhHHHHHHHHhhhhccCCc-ceeeHHHHHHHHHHHhC-cHHHHHHHHHHHHHHHHHHH
Confidence             4566777777777776666 45688999999999544444 87888888888888877 77777777776654444444

>TIGR00788 fbt folate/biopterin transporter

Probab=98.49  E-value=6.2e-07  Score=83.43  Aligned_cols=106  Identities=11%  Similarity=0.020  Sum_probs=91.1

Q ss_pred             cccchhhHHHHhhhhcCCchHHHHHHHHHHHHHhhhhh----------hhhHHHHHHHHHHhhhhhhhhccchhhhhhcc
Q 014628            3 GLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGS----------SFDFWSIAICRMLVGVGEASFISLAAPFIDDN   72 (421)
Q Consensus         3 g~~i~~~~~g~l~Dr~Grr~~~~~~~~~~~~~~~~~~~----------~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~   72 (421)
                      +.+++....+++.+|++.|+++.++.++.+++.+....          .++.+.++..-++.+++.+........++.+.
T Consensus       300 ~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~  379 (468)
T TIGR00788       300 GSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEVFVLGDSIIAEVLAQLKFMPFLVLLARL  379 (468)
T ss_pred             HHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeeccccccCCCCeeeeeehhHHHHHHHHHHHccHHHHHHHh
Confidence            45678888999999999999999999999988866431          13444556678899999999999999999999


Q ss_pred             CCCCCchhHHHHHHHHHHHHhhhHHHhHHhhhhcch
Q 014628           73 APVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLN  108 (421)
Q Consensus        73 ~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~  108 (421)
                      .|+++++...++.+...++|..+++.+++.+.++.|
T Consensus       380 ~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~~~g  415 (468)
T TIGR00788       380 CPSGCESSVFALLASILHLGSSVSGFLGVLLMETIG  415 (468)
T ss_pred             CCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            999999999999999999999999999999987666

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>PF13347 MFS_2: MFS/sugar transport protein

Probab=98.49  E-value=1e-06  Score=81.38  Aligned_cols=144  Identities=16%  Similarity=0.114  Sum_probs=94.4

Q ss_pred             HHHHHHHHHHHHHhhHHHHHhhCCccchhHH-HhhhhHHHHHHhhhhhHHHh----hhccccchhhHHHHHHHHHHHHHH
Q 014628          214 IAYNFVIGAYSYWGPKAGYNIYHMSNADMMF-GGVTIVCGIVGTISGGFILD----QMGATISNAFKLLSAATFLGAISC  288 (421)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~l~d----~~~~~~~~~~~~~~~~~~~~~~~~  288 (421)
                      +...........+++.|+.+..+.++..... ..+.-+...+..++.|.++|    |+|||+    +.+..+.....+.+
T Consensus        11 ~~~~~~~~~~~~~~~~f~~~~~gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrr----p~~l~g~i~~~~~~   86 (428)
T PF13347_consen   11 LGYNMIWSLLSSYLLYFYTDVLGLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTRWGRRR----PWILIGAILLALSF   86 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccccccc----eEeehhhHHHHHHH
Confidence            4445555666678888899998888654433 34555777888889999999    555553    55555555555555


Q ss_pred             HHHHhh-h-------hhHHHHHHHHHHHHHHHhccCchhhhhhcccCC-chhhHHHHHHHHHHHhhcccCcchhHHHhhh
Q 014628          289 LTAFCL-S-------SLYGFLALFTVGELLVFATQAPVNYVCLHSVKP-SLRALSMAISTVSIHIFGDVPSSPLVGVLQD  359 (421)
Q Consensus       289 ~~~~~~-~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~  359 (421)
                      .++... +       ......+..++...+......+..++..+..++ ++|.+..+..+..... |..+...+.+.+.+
T Consensus        87 ~llf~~~p~~~~~~~~~~~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~~R~~l~~~~~~~~~~-g~~l~~~~~~~l~~  165 (428)
T PF13347_consen   87 FLLFSPPPAGLSFTAKLVWLFVFYILFDIAYTFVQIPYNALIPELTPDPDERTRLSSWRMIFSMI-GSLLASFLAPILVS  165 (428)
T ss_pred             HHhhccccchhhhhhHHHHHHHHHHHHHHhhhhccCchhhcCccccccHhhhhhHHHHHHHHHHH-HHHHHHHHhhhhhh
Confidence            544433 2       112234455556777778888888889998875 6899999988544444 66555556666665


Q ss_pred             ccc
Q 014628          360 HVN  362 (421)
Q Consensus       360 ~~g  362 (421)
                      ..+
T Consensus       166 ~~g  168 (428)
T PF13347_consen  166 WFG  168 (428)
T ss_pred             hhc
Confidence            554

>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters

Probab=98.49  E-value=3.1e-06  Score=76.50  Aligned_cols=109  Identities=19%  Similarity=0.196  Sum_probs=89.4

Q ss_pred             hHHHHHHHHHHHHHhhhhhhh---h------HHHHHHHHHHhhhhhhhhccchhhhhhccCCCC---CchhHHHHHHHHH
Q 014628           22 RLIGVGLSVWTFATAGCGSSF---D------FWSIAICRMLVGVGEASFISLAAPFIDDNAPVP---QKTAWLSMFYMCI   89 (421)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~---~------~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~---~r~~~~~~~~~~~   89 (421)
                      |+++++.++..+|.++..++.   +      .+.++++-.+.++|.|+.-|...++.+|.++++   +|.+.+.+++.+.
T Consensus         2 ktI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~i   81 (372)
T PF00854_consen    2 KTILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGI   81 (372)
T ss_dssp             HHHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHH
T ss_pred             HhhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHH
Confidence            577888888888888854442   2      357888999999999999999999999999876   3677889999999


Q ss_pred             HHHhhhHHHhHHhhhhcchhHHHHHHHHHHHHHHHHHHHhc
Q 014628           90 PTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVI  130 (421)
Q Consensus        90 ~~G~~~g~~~~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~  130 (421)
                      ++|..+++.+.+++.+++||.+.|.+.++..++..+..+.-
T Consensus        82 n~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f~~~  122 (372)
T PF00854_consen   82 NIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVFLSG  122 (372)
T ss_dssp             HHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHHHCC
T ss_pred             hhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHHHhC
Confidence            99999999999999999999999999988776665554443

The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=98.47  E-value=8e-06  Score=73.78  Aligned_cols=154  Identities=18%  Similarity=0.049  Sum_probs=109.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhHHHHHhhCCccchhHHH-hhhhHHHHHHhhhhhHHHhhhccccchhhHHHHHHHHHHHH
Q 014628          208 VNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADMMFG-GVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAI  286 (421)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~  286 (421)
                      .....-+..+..+.....|+..|+.+..|.++...... .+.=+...+.-++.|.++||..+|..+.|+.++.+.+..++
T Consensus        16 ~Yg~gd~~~~~~~~~~~~yLl~fYTdv~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i   95 (467)
T COG2211          16 GYGLGDFASNFAFGIVVLYLLFFYTDVFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAI   95 (467)
T ss_pred             hhcchhhHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHHHH
Confidence            33445566667777888899999999999997555333 44447778889999999999887776666777777666666


Q ss_pred             HHHHHHhhh------hhHHHHHHHHHHHHHHHhccCchhhhhhcccCC-chhhHHHHHHHHHHHhhcccCcchhHHHhhh
Q 014628          287 SCLTAFCLS------SLYGFLALFTVGELLVFATQAPVNYVCLHSVKP-SLRALSMAISTVSIHIFGDVPSSPLVGVLQD  359 (421)
Q Consensus       287 ~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~  359 (421)
                      .+.+.+..+      ......+...+.+.+......|..++..+..++ ++|.+..+.-..+... |..+...+.+.+.+
T Consensus        96 ~~~l~F~~p~~~~~~k~~ya~vtY~l~~l~YT~vniPy~al~~~iT~d~~ER~~l~s~R~~~~~~-g~~l~~~~~~plv~  174 (467)
T COG2211          96 VAVLLFITPDFSMTGKLIYALVTYMLLGLGYTLVNIPYGALGPEITQDPQERASLTSWRMVFASL-GGLLVAVLFPPLVK  174 (467)
T ss_pred             HHHHHHcCCCcccCcchHHHHHHHHHHHHHHHheeCchhhcchhhcCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence            555555444      233445566667788888888888888887665 7899999988544444 76666666666666


Q ss_pred             ccc
Q 014628          360 HVN  362 (421)
Q Consensus       360 ~~g  362 (421)
                      ..+
T Consensus       175 ~~g  177 (467)
T COG2211         175 LFG  177 (467)
T ss_pred             HhC
Confidence            554

>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism]

Probab=98.46  E-value=3.8e-05  Score=66.26  Aligned_cols=304  Identities=10%  Similarity=-0.035  Sum_probs=154.5

Q ss_pred             hHHHHhhh-----hcCCchH-HHHHHHHHHHHHhhhhh-----------hhhHHHHHHHHHHhhhhhhhhccchhhhhhc
Q 014628            9 PIFASLAK-----SHNPFRL-IGVGLSVWTFATAGCGS-----------SFDFWSIAICRMLVGVGEASFISLAAPFIDD   71 (421)
Q Consensus         9 ~~~g~l~D-----r~Grr~~-~~~~~~~~~~~~~~~~~-----------~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~   71 (421)
                      ++|.++.|     |+||||. ++-+..+.+......+.           .++...+...-++.-+..+.-..+.-.+.-.
T Consensus        81 llWaPiVDs~y~k~~GrrksWvvp~q~llG~~mllLs~~v~~~~g~ng~~p~v~~lt~~f~LLnflaAtQDIAVDgwALt  160 (510)
T KOG3574|consen   81 LLWAPIVDSVYSKRFGRRKSWVVPCQYLLGLFMLLLSYLVDRGLGGNGGLPNVVALTLLFLLLNFLAATQDIAVDGWALT  160 (510)
T ss_pred             HHHHhhhHHHHHHhhccccceeeehHHHHHHHHHHHhhCCCcccccCCCCcchHHHHHHHHHHHHHHhhhhhhhhHHHHH
Confidence            57889999     9999986 33333333332222221           2333334334455555566556666666667


Q ss_pred             cCCCCCchhHHHHHHHHHHHHhhhHHHhHHhhhh-------cchhH---------HHHHHHHHHHHHHHHHHHhcccccc
Q 014628           72 NAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGS-------HLNWR---------YAFWGEAILMLPFAVLAFVIKPLQL  135 (421)
Q Consensus        72 ~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~-------~~~wr---------~~f~~~~~~~~~~~~~~~~~~p~~~  135 (421)
                      +..+++.|.+......+.+.|..++..+.-.+.+       ..+|.         .-.+..+.+.++...+..+...|. 
T Consensus       161 mLs~e~lgyaST~q~Vg~~~GyfL~~~ifLaL~s~dF~N~y~rs~P~~~g~ItL~gy~~fwg~~~~vat~Lv~~~kke~-  239 (510)
T KOG3574|consen  161 MLSRENLGYASTCQSVGQTAGYFLGNVVFLALESPDFCNTYLRSIPLDQGFITLAGYLWFWGALFIVATTLVALLKKEN-  239 (510)
T ss_pred             hcCHhhcCchhHHHHHHHhhhHHhhcceeeEecChhhhhHHHhcCcCccceEEhhHHHHHHHHHHHHHHHHHHHhcCCC-
Confidence            7778888888887777777777776654333322       01121         112223333333333333332110 


Q ss_pred             cccCCccccchhhhhhcccccccccCCcccccccchhhhhhhccccchhhhhhhhhhhhhhhHHhhcchhHHHHHHHHHH
Q 014628          136 KGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIA  215 (421)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  215 (421)
                           +++.  .  ++..                                  ...++..+-++++++-|....+......
T Consensus       240 -----~~~~--~--~e~~----------------------------------~~i~~~yk~l~~vLklk~v~~la~i~lt  276 (510)
T KOG3574|consen  240 -----DESV--D--EELE----------------------------------LGIHESYKLLRDVLKLKSVRWLAGILLT  276 (510)
T ss_pred             -----chhh--h--hhhh----------------------------------cCHHHHHHHHHHHHcCccHHHHHHHHHH
Confidence                 1110  0  0000                                  1112223456667777777777776667


Q ss_pred             HHHHHHHHHHHhhHHHHHhhCCccchhHHHhhhhHHHHHHhhhhhHHHhhhcc--ccchh-hHHHHHHHHHHHHHHHHHH
Q 014628          216 YNFVIGAYSYWGPKAGYNIYHMSNADMMFGGVTIVCGIVGTISGGFILDQMGA--TISNA-FKLLSAATFLGAISCLTAF  292 (421)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~  292 (421)
                      .-.++.+.....+.-+.|+ |.+.......   .+..++..+..++...|+..  |+... .+.+..=.........+..
T Consensus       277 ~K~gf~a~da~t~LkLle~-Gv~ke~Lal~---~v~~~plqI~l~~~~gk~ta~~~pl~~~lka~~~R~~~~~~~t~Lv~  352 (510)
T KOG3574|consen  277 GKLGFQAADALTSLKLLEH-GVPKEELALI---AVPLVPLQIALPLYIGKWTAGPRPLNVFLKAVPYRLGGGLVQTALVW  352 (510)
T ss_pred             HHHHhhhhhhccchHHHHc-CCChhHheee---eeehhhHHHhhhhhheeecCCCCcchHHHHhhhHHHHHHHHHHHHHh
Confidence            7777777777667666664 4443332221   13333334444444444322  11110 0001111111111112222


Q ss_pred             hhhh------------hHHHHHHHHHHHHHHHhccCchhhhhhcccCCchhhHHHHHHHHHHHhhcccCcchhHHHhhhc
Q 014628          293 CLSS------------LYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDH  360 (421)
Q Consensus       293 ~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~  360 (421)
                      ..++            ....+....+.+.+....+...+...++..+|...|+.+.+.|+..+. |+-.-..+..++.|.
T Consensus       353 ~~~~~~~~~G~~~~~~~il~i~~y~~~~~~~ts~fv~~maf~aqisdp~iggTymTlLNTLsnL-Gg~wp~tv~l~l~D~  431 (510)
T KOG3574|consen  353 WTPTLGHSDGTFPRGYYILLITSYAFHQVFVTSMFVSGMAFHAQISDPAIGGTYMTLLNTLSNL-GGNWPGTVALWLADG  431 (510)
T ss_pred             hhcccccCCCceeechHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccCccHHHHHHHHHHh-cCCcHHHHHHHhccc
Confidence            1111            111222234445555556666778888889999999999999988888 666555677888875


Q ss_pred             c
Q 014628          361 V  361 (421)
Q Consensus       361 ~  361 (421)
                      .
T Consensus       432 l  432 (510)
T KOG3574|consen  432 L  432 (510)
T ss_pred             C
Confidence            5

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=98.44  E-value=1.2e-08  Score=94.99  Aligned_cols=126  Identities=13%  Similarity=0.108  Sum_probs=94.7

Q ss_pred             HHHhhhhHHHHHHhhhhhHHHhhhccccchhhHHHHHHHHHHHHHHHHHHhhh---hhHHHHHHHHHHHHHHHhccCchh
Q 014628          243 MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLS---SLYGFLALFTVGELLVFATQAPVN  319 (421)
Q Consensus       243 ~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~  319 (421)
                      ...+...++.++|.++.|+++||+|||     +.+..+.++..+..++....+   +.+.+.+.-++.|++.+...+...
T Consensus        50 ~~~~~~~~g~~~G~~~~g~~~d~~GRk-----~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~R~~~G~~~g~~~~~~~  124 (451)
T PF00083_consen   50 LLTSSFFIGAIVGALIFGFLADRYGRK-----PALIISALLMIIGSILIAFAPSYNNFWMLLIGRFLIGFGIGGAYVVSP  124 (451)
T ss_pred             HHHHHHHhhhccccccccccccccccc-----cccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            344677789999999999999999999     777777777777777766666   778788888889999999999999


Q ss_pred             hhhhcccCCchhhHHHHHHHHHHHhhcccCcchhHHHhhhccc---cchhhhHHHHHHH
Q 014628          320 YVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVN---NWRKTTLALTSIF  375 (421)
Q Consensus       320 ~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~g---~~~~~~~~~~~~~  375 (421)
                      .++.|..|+++|+...++.+.... +|..++..+.-.+ ....   .|+..+.+.....
T Consensus       125 ~~~~E~~~~~~R~~~~~~~~~~~~-~G~~~~~~~~~~~-~~~~~~~~Wr~~~~~~~~~~  181 (451)
T PF00083_consen  125 IYISEIAPPKHRGFLSSLFQLFWA-LGILLASLIGYIV-SYYSDNWGWRILLIFGAIPS  181 (451)
T ss_pred             cccccccccccccccccccccccc-ccccccccccccc-cccccccccccccccccccc
Confidence            999999999999999999865544 4777766443323 2222   2555555544443

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]

Probab=98.41  E-value=0.00036  Score=62.93  Aligned_cols=57  Identities=11%  Similarity=0.098  Sum_probs=42.0

Q ss_pred             HHHHHHHHHhccCchhhhhhcccCCchhhHHHHHHHHHHHhhcccCcchhHHHhhhcc
Q 014628          304 FTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHV  361 (421)
Q Consensus       304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~  361 (421)
                      ..+..+.....+....+.-++...|..-|+.+.+.|+..+. |+-.-..+.=++.|.+
T Consensus       412 ~~l~sf~stvmFVai~AFharISDP~IGGTYMTLLNTvSNL-GGtWP~~~vL~lVD~f  468 (544)
T PF13000_consen  412 HVLSSFMSTVMFVAIMAFHARISDPAIGGTYMTLLNTVSNL-GGTWPRTFVLWLVDYF  468 (544)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhccCcccchHHHHHHHHHHhc-CCCchHHHHHHHhhhc
Confidence            33444555566677788888888899999999999999998 7666555656666654

This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=98.41  E-value=2.8e-06  Score=80.36  Aligned_cols=131  Identities=16%  Similarity=0.123  Sum_probs=103.0

Q ss_pred             hHHHhhhhHHHHHHhhhhhHHHhhhccccchhhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhccCchhhh
Q 014628          242 MMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYV  321 (421)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  321 (421)
                      ..+.+...++..++.++.|+++|++|||     ..+..+.++..++.++.....+...+.+.=++.|++.+........+
T Consensus        92 s~~~s~~~lga~~g~l~~g~l~d~~GRk-----~~l~~~~~~~~iG~ii~~~a~~~~~l~~GR~l~G~g~G~~~~~~piy  166 (513)
T KOG0254|consen   92 GLLTSILNLGALVGSLLAGRLGDRIGRK-----KTLLLAVVLFLIGAIIIALAPSWYQLIVGRILTGLGVGGASVLAPVY  166 (513)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhH-----HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccchhhhhhcchhh
Confidence            3566778899999999999999999999     88888888888888888888899999999999999999998889999


Q ss_pred             hhcccCCchhhHHHHHHHHHHHhhcccCcchhHHHhhhcc-ccchhhhHHHHHHHHHHH
Q 014628          322 CLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHV-NNWRKTTLALTSIFFLAA  379 (421)
Q Consensus       322 ~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~-g~~~~~~~~~~~~~~~~~  379 (421)
                      ..|..|++.||...+..+.... +|..++ .+.+...++. .+|+..+....+..+...
T Consensus       167 ~sEiap~~~RG~l~~~~~l~~~-~Gi~~~-~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~  223 (513)
T KOG0254|consen  167 ISEIAPAHIRGTLVSLYQLFIT-IGILLG-YCINYGTSKVYAGWRIPLGLALIPAVILA  223 (513)
T ss_pred             HhhcCChhhhHHHHHHHHHHHH-HHHHHH-HHHhhhhccCCccHHHHHHHHHHHHHHHH
Confidence            9999999999999999976666 477766 4555555432 236654444444433333

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=98.35  E-value=4.6e-06  Score=68.87  Aligned_cols=120  Identities=15%  Similarity=0.110  Sum_probs=87.1

Q ss_pred             cchhhHHHHhhhhcCCchHHHHHHHHHHHH-HhhhhhhhhHHHHHHHHHHhhhhhhhhccchhhhhhccCCCCCchhHHH
Q 014628            5 LVASPIFASLAKSHNPFRLIGVGLSVWTFA-TAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLS   83 (421)
Q Consensus         5 ~i~~~~~g~l~Dr~Grr~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~   83 (421)
                      ++.+++.|.++||+|++-+.+.+..+..+. -....|  +++.=+....+.|++.+.........++...|+++.|++.+
T Consensus       314 av~spvfg~i~Dk~G~n~~wv~~a~~~tl~~H~~l~F--t~lsPy~~m~~lGLsysllAcslWP~va~~vpE~qLGTayg  391 (459)
T KOG4686|consen  314 AVLSPVFGAISDKYGFNLWWVASACILTLLGHSGLFF--TFLSPYTSMTFLGLSYSLLACSLWPCVASLVPEEQLGTAYG  391 (459)
T ss_pred             hhhhhhHHHhHhhhcceehhHHHHHHHHHHHhhhHHh--hhccHHHHHHHHhhhHHHHHHHHhhhhhhhCCHHHhcchHH
Confidence            567899999999999999877665554443 333332  33333566778888887766667778888889999999999


Q ss_pred             HHHHHHHHHhhhHHHhHHhhhhcch---hHHHHHH-HHHHHHHHHHH
Q 014628           84 MFYMCIPTGVALGYVYGGVVGSHLN---WRYAFWG-EAILMLPFAVL  126 (421)
Q Consensus        84 ~~~~~~~~G~~~g~~~~~~l~~~~~---wr~~f~~-~~~~~~~~~~~  126 (421)
                      ..+...++|..+.|++++.+.++-|   |--.|.+ .+.+++....+
T Consensus       392 f~qsIqNLgla~i~Iiag~i~d~~g~y~~le~ffl~~~~~aL~svgi  438 (459)
T KOG4686|consen  392 FIQSIQNLGLAFIPIIAGFIADGDGSYDNLEAFFLIIGLMALTSVGI  438 (459)
T ss_pred             HHHHHHhhhhhHHhhhhheeecCCCchhhHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999997644   5444444 44444443333

>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]

Probab=98.28  E-value=0.00013  Score=68.79  Aligned_cols=125  Identities=15%  Similarity=0.132  Sum_probs=97.9

Q ss_pred             chhhHHHHhhhhc-CCchHHHHHHHHHHHHHhhhhhhhh-------------------------HHHHHHHHHHhhhhhh
Q 014628            6 VASPIFASLAKSH-NPFRLIGVGLSVWTFATAGCGSSFD-------------------------FWSIAICRMLVGVGEA   59 (421)
Q Consensus         6 i~~~~~g~l~Dr~-Grr~~~~~~~~~~~~~~~~~~~~~~-------------------------~~~l~~~r~l~G~~~~   59 (421)
                      ...+.++.++|-| ||-+++.++.++..++.++..++..                         ...++.+.-+..+|.|
T Consensus        88 ~~~l~g~~laD~f~gry~tI~~~s~i~~~G~~~lt~~a~~~~l~p~~~~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~g  167 (571)
T KOG1237|consen   88 LLPLLGAFLADSFLGRYFTINIGSLISLLGLFGLTLSAMIPALLPFMCKFKPGGNVCESPSKLQLAVLYGALYLIALGAG  167 (571)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccCCCCCCcccCcchHHHHHHHHHHHHheeccC
Confidence            3457899999986 8999999999998888665443321                         2356667777788999


Q ss_pred             hhccchhhhhhccCC---CC---CchhHHHHHHHHHHHHhhhHHHhHHhhhhcchhHHHHHHHHHHHHHHHHHHHhc
Q 014628           60 SFISLAAPFIDDNAP---VP---QKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVI  130 (421)
Q Consensus        60 ~~~~~~~~~i~~~~~---~~---~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~  130 (421)
                      +.-|...+.-+|-++   ++   ++...+.++....+.|..++..+-.++.+..+|.+.|.+..+..++..++.+..
T Consensus       168 g~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a~t~~vyiq~~~~w~lgf~i~~~~~~lai~iF~~g  244 (571)
T KOG1237|consen  168 GIRPCLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNGGALLAQTVLVYIQDNVGWKLGFGIPTVLNALAILIFLPG  244 (571)
T ss_pred             CCCCcchhhcccccCccCcchhhCcccchhHHHHHHHHHHHHHHHHHHhhhhcccceeeccHHHHHHHHHHHHHHcC
Confidence            999999999999998   32   234788999999999999999999999888999999999987766555554443

>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans

Probab=98.27  E-value=6.1e-06  Score=63.22  Aligned_cols=99  Identities=10%  Similarity=0.156  Sum_probs=85.8

Q ss_pred             ccchhhHHHHhhhhcCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhhhhhhhccchhhhhhccCCCCCchhHHH
Q 014628            4 LLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLS   83 (421)
Q Consensus         4 ~~i~~~~~g~l~Dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~   83 (421)
                      ..+.+++.+.+.+++|.|+.++++.+.+.+-.... +-++.+.++.+-++.|++.+..+.+.-.++.+..++++|++..+
T Consensus        50 ~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~-~~~~~~~l~~~s~l~G~~~a~lW~aqg~ylt~~s~~~~~~~~~~  128 (156)
T PF05978_consen   50 FAISCLFAPSIVNKLGPKWSMILGSLGYAIYIASF-FYPNSYTLYPASALLGFGAALLWTAQGTYLTSYSTEETIGRNTG  128 (156)
T ss_pred             HHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHhhhhHHhhHhhhHHHHHcCCHHHHhhHHH
Confidence            46778889999999999999999999998655443 56778899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhHHHhHHhh
Q 014628           84 MFYMCIPTGVALGYVYGGVV  103 (421)
Q Consensus        84 ~~~~~~~~G~~~g~~~~~~l  103 (421)
                      ++-.....+.++|.++.-.+
T Consensus       129 ifw~i~~~s~i~G~~~~~~~  148 (156)
T PF05978_consen  129 IFWAIFQSSLIFGNLFLFFI  148 (156)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            98888888888887765544

UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].

>COG3202 ATP/ADP translocase [Energy production and conversion]

Probab=98.27  E-value=0.0026  Score=57.43  Aligned_cols=230  Identities=16%  Similarity=0.075  Sum_probs=127.5

Q ss_pred             ccchhhHHHHhhhhcCCchHHHHHHHHHHHHHhhhhhh---------hh-----------------------HHHHHHHH
Q 014628            4 LLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSS---------FD-----------------------FWSIAICR   51 (421)
Q Consensus         4 ~~i~~~~~g~l~Dr~Grr~~~~~~~~~~~~~~~~~~~~---------~~-----------------------~~~l~~~r   51 (421)
                      ..+..++.+++.+++.|.+++-.-+..+....+++++.         ++                       .|...+.-
T Consensus        75 avif~~iy~kl~~~lt~~~vF~~~~~~F~~fF~LFa~Vi~P~~~~~hp~~~~~~~~~~~~p~~l~~~ili~~~Ws~s~~Y  154 (509)
T COG3202          75 AVIFTIIYQKLLNILTREKVFYIILGFFLGFFALFAFVIYPYKDILHPDPEFSRDLFADLPMFLKWFILIVGEWSYSLFY  154 (509)
T ss_pred             HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCHHHHHHHHhhCCccceeeeEeecchHHHHHH
Confidence            45677889999999999999888887777777777653         11                       12222222


Q ss_pred             HHhhhhhhhhcc-chhhhhhccCCCCCchhHHHHHHHHHHHHhhhHHHhHHhhhhcc----------hhHHHHHHHHHHH
Q 014628           52 MLVGVGEASFIS-LAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHL----------NWRYAFWGEAILM  120 (421)
Q Consensus        52 ~l~G~~~~~~~~-~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~----------~wr~~f~~~~~~~  120 (421)
                      .+.=+-.+.... .-.....|.+..+|-.|..++++.+.+++..++..+..++..+.          .-+..+.+.+..+
T Consensus       155 i~aELWgslV~S~lFw~faNeitt~~eakRFy~lf~l~~ni~lllsg~~~~~~~k~~~~~~~~~~~~~~~~~~~vi~~~~  234 (509)
T COG3202         155 IMAELWGSLVLSLLFWQFANEITTIEEAKRFYPLFGLGANISLLLSGEVTSWLSKHRDALASEFKDLLLQILFIVIVILG  234 (509)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhchhhHhHHHHHHHHHHHHHHHHHHH
Confidence            222222222222 34566789999999999999999999999999888888876521          1334444444443


Q ss_pred             HHHHHHHHhcccccccccCCccccchhhhhhcccccccccCCcccccccchhhhhhhccccchhhhhhhhhhhhhhhHHh
Q 014628          121 LPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVL  200 (421)
Q Consensus       121 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (421)
                      ++...+..+.-+...+......+.+..                             ++++       .......++++.+
T Consensus       235 ~i~~~l~~~~~r~il~~~~f~~~~~~k-----------------------------k~~~-------k~k~~~~~s~k~i  278 (509)
T COG3202         235 IIAILLYRYINRNVLTDPLFYLRAKKK-----------------------------KKKK-------KLKLGLIESFKMI  278 (509)
T ss_pred             HHHHHHHHHHHhhcccCcchhHHHhcc-----------------------------cccc-------cccCcHHHHHHHH
Confidence            333333333211111110000000000                             0000       1112334678888


Q ss_pred             hcchhHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhCCccc-hh---HHHhhhhHH-HHHHhhhhhHHHhhhccc
Q 014628          201 LQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNA-DM---MFGGVTIVC-GIVGTISGGFILDQMGAT  269 (421)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~~~~~~~~-~~~~~~~~g~l~d~~~~~  269 (421)
                      .++|.++.+.+...+++.+.+.+-.---.-.+..+..... ..   .+....++. .++....++.+.+|.|-.
T Consensus       279 ~~SkyL~~ial~vl~Y~v~inLvE~~wKs~ik~~~~~~~~~~~f~~~~~~~tgvv~~v~~~~~~s~~ir~~GW~  352 (509)
T COG3202         279 LRSKYLGAIALLVLAYGVSINLVEGVWKSGIKELYPTTNEYTAFMGRFQIWTGVVSLVVFLFPGSNLIRRVGWF  352 (509)
T ss_pred             HhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhHH
Confidence            9999999888888777777665543222222222222211 11   122223333 345556677777777764

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=98.24  E-value=2.1e-05  Score=65.50  Aligned_cols=133  Identities=11%  Similarity=0.105  Sum_probs=79.1

Q ss_pred             HHHHHHHHHhhHHHHHhhCCccchh-HHHhhhhHHHHHHhhhhhHHHhhhccccchhhHHHHHHHHHHHHHHHHHHhh--
Q 014628          218 FVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCL--  294 (421)
Q Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  294 (421)
                      ...+.+..|.|. +++..+.++.+. .+.....++..+ .+..|.+.|++|.+     ..+.++......+.......  
T Consensus        16 Gt~Y~Fs~yS~~-Lk~~l~~sq~~l~~l~~~~~~G~~~-G~~~G~l~d~~gp~-----~~l~iG~~~~~~GY~~~~l~~~   88 (250)
T PF06813_consen   16 GTTYTFSAYSPQ-LKSRLGYSQSQLNTLSTAGDIGSYF-GILAGLLYDRFGPW-----VVLLIGAVLGFVGYGLLWLAVS   88 (250)
T ss_pred             CcccchhhhhHH-HHHHhCCCHHHHHHHHHHHHHHhhc-cHHHHHHHHhcchH-----HHHHHHHHHHHHHHHHHHHHHh
Confidence            345666677775 456788887665 444555566665 58889999999987     66666666555555443322  


Q ss_pred             -----hhhHHHHHHHHHHHHHHHhccCchhhhhhcccCCchhhHHHHHHHHHHHhhcccCcchhHHHhhh
Q 014628          295 -----SSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQD  359 (421)
Q Consensus       295 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~  359 (421)
                           .+.|...+..++.+.+.............+.+| ++||++.|+.-...+. ++.+-..+...+.+
T Consensus        89 ~~i~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP-~~RG~vvgilk~~~GL-Saai~t~i~~~~f~  156 (250)
T PF06813_consen   89 GRIPSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFP-RSRGTVVGILKGFFGL-SAAIFTQIYSAFFG  156 (250)
T ss_pred             CccCccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCc-cccCceehhhhHHHHh-HHHHHHHHHHHHcC
Confidence                 123333333334433333333444455566775 6899999999777776 43333334433333

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=98.20  E-value=6.6e-05  Score=64.66  Aligned_cols=150  Identities=13%  Similarity=0.052  Sum_probs=111.4

Q ss_pred             HHhhHHHHHhhCCccchh-HHHhhhhHHHHHHhhhhhHHHhhhccccchhhHHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Q 014628          225 YWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLAL  303 (421)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (421)
                      -.++..- +..+.+.... .+++++.++-.+.+++..++.+|+|.+     +.+..+.++..+...+=... +.+..+..
T Consensus        33 PLL~~Ir-~~~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~~g~e-----r~l~~~Llli~~G~~iR~~~-~~~~L~~g  105 (395)
T COG2807          33 PLLDEIR-QDLGLSFSVAGLLTTLPLLAFGLFAPAAPRLARRFGEE-----RSLFLALLLIAAGILIRSLG-GLPLLFLG  105 (395)
T ss_pred             hhHHHHH-HHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhH-----HHHHHHHHHHHHHHHHHhcc-cHHHHHHH
Confidence            3334333 3355554444 667888888889999999999999988     66666666555555443333 55667777


Q ss_pred             HHHHHHHHHhccCchhhhhhcccCCchhhHHHHHHHHHHHhhcccCcchhHHHhhhccccchhhhHHHHHHHHHHHHHHH
Q 014628          304 FTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFFLAAGIWF  383 (421)
Q Consensus       304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~  383 (421)
                      ..+.+.+.+..+...+..+.+.+| ++.+..+|++....+. ++.+++.+...+.++.++|+....+.+...++..+.++
T Consensus       106 t~l~G~gIav~nVLLPslIK~~Fp-k~~~~mtglYs~sl~~-~aaLaa~lavpla~~~~gW~~aL~~WAl~allAl~~Wl  183 (395)
T COG2807         106 TLLAGAGIAVINVLLPSLIKRDFP-KRVGLMTGLYSTSLGA-GAALAAALAVPLAQHSGGWRGALGFWALLALLALLIWL  183 (395)
T ss_pred             HHHHHhhHHHHHHhhhHHHHhhcc-cchhhHHhHHHHHHHH-HHHHHhhhhhHHHHhhccHHHHHHHHHHHHHHHHHHHh
Confidence            888888888888888999988885 5679999999888887 77888888888888877788888888777766666554

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=98.09  E-value=2.1e-06  Score=75.81  Aligned_cols=132  Identities=10%  Similarity=-0.049  Sum_probs=99.3

Q ss_pred             cccchhhHHHHhhhhcCCchHHHHHHHHHHHHHhhhhhhhhH----HHHHHHHHHhhh-hhhhhccchhhhhhccCCCCC
Q 014628            3 GLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDF----WSIAICRMLVGV-GEASFISLAAPFIDDNAPVPQ   77 (421)
Q Consensus         3 g~~i~~~~~g~l~Dr~Grr~~~~~~~~~~~~~~~~~~~~~~~----~~l~~~r~l~G~-~~~~~~~~~~~~i~~~~~~~~   77 (421)
                      ++.-|..+...+.|+.|||++.+.+.+++++..+..+...|-    ..++++-.+..+ +.-+-......+-+|.+|.+-
T Consensus       360 ~~vPGyw~tv~~id~iGRk~iq~~GF~~~~i~~~~~~~~y~~~~~~~Gf~v~y~l~~ff~NFGPn~ttfivpaE~FParv  439 (538)
T KOG0252|consen  360 STVPGYWFTVYFIDIIGRKYIQLMGFFIMTIFFFVIAGPYNQLENTIGFVVLYSLTFFFGNFGPNATTFIVPAEIFPARV  439 (538)
T ss_pred             ccCCceeEEEEEeehhhhHHHHHhhHHHHHHHHHHHcCCcccccccCceeehHHHHHHHHhcCCCceeEEeehhhchHHH
Confidence            344566777889999999999999999999999998887761    112222222222 122222345566789999999


Q ss_pred             chhHHHHHHHHHHHHhhhHHHhHHhhhh-----cchhHHHHHHHHHHHHHHHHHHHhcccccc
Q 014628           78 KTAWLSMFYMCIPTGVALGYVYGGVVGS-----HLNWRYAFWGEAILMLPFAVLAFVIKPLQL  135 (421)
Q Consensus        78 r~~~~~~~~~~~~~G~~~g~~~~~~l~~-----~~~wr~~f~~~~~~~~~~~~~~~~~~p~~~  135 (421)
                      |+...|+..+..-.|.++|.....++.+     ..+-|++|++.+...++..+..++ +||+.
T Consensus       440 R~t~hGIsAA~GK~GAivg~~~F~~~t~~~yp~~~g~~~v~~i~~~~~~~gi~~T~l-~pEtk  501 (538)
T KOG0252|consen  440 RSTCHGISAASGKAGAIVGAFGFLYLTDHNYPPNIGVRNVFIILAGCMLLGILFTLL-IPETK  501 (538)
T ss_pred             hhhhhhHHHHhccchHHHHHHHhhHhhhccCCccccchHHHHHHHHHHHHhHheeEE-eeccc
Confidence            9999999999999999999999999988     778999999999887666555544 46754

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=98.01  E-value=8e-05  Score=67.67  Aligned_cols=135  Identities=12%  Similarity=0.074  Sum_probs=77.0

Q ss_pred             HHHhhhhHHHHHHhhhhhHHHhhhccccchhhHHHHHHHHHHHHHHHHHHhh----h-hhHHHHHHHHHHHHHHHhccCc
Q 014628          243 MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCL----S-SLYGFLALFTVGELLVFATQAP  317 (421)
Q Consensus       243 ~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~-~~~~~~~~~~~~~~~~~~~~~~  317 (421)
                      ...+...++..++++..|++..|.+.-+    +.++.+.+++.++.++....    + ..+..++.-.+.|++.+ ....
T Consensus        75 ~viaa~slg~~i~~liF~~Ws~k~~~~k----~Pli~s~ii~~~g~llY~~l~~~~~~~~y~mL~~R~l~Gvg~~-n~a~  149 (488)
T KOG2325|consen   75 LVIAASSLGHAIFSLIFGIWSNKTGSVK----KPLIVSFLIAIIGNLLYLALAYVPNGVKYLMLVARILTGVGVG-NFAV  149 (488)
T ss_pred             HHHHHHHHHHHhcchhhcccccccCCcc----cCHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHcCcCcc-cHHH
Confidence            3345677888999999999999988521    44555555555555444221    2 23334444444444432 2344


Q ss_pred             hhhhhhcccCCchhhHHHHHHHHHHHhhcccCcchhHHHhhh------------ccccchhhhHHHHHHHHHHHHHHH
Q 014628          318 VNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQD------------HVNNWRKTTLALTSIFFLAAGIWF  383 (421)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~------------~~g~~~~~~~~~~~~~~~~~~~~~  383 (421)
                      .-.++++..-.++|.++++..+. ...+|.++||.+...+..            .+..|..+-++.+...+...++..
T Consensus       150 lR~Y~a~~s~~~dR~rA~a~~~~-~~vlg~ilGp~~q~~f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~  226 (488)
T KOG2325|consen  150 LRAYIADASTVEDRPRAFAATSG-GFVLGIILGPTIQLAFTPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIIL  226 (488)
T ss_pred             HHHHHHhccCccchHHHHHHhhh-HHHHHHHHhHHHHHHHhhhcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHH
Confidence            56777776667888888888744 333366666654433321            112455566666666555554444

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=98.01  E-value=0.00029  Score=61.14  Aligned_cols=143  Identities=15%  Similarity=0.045  Sum_probs=86.6

Q ss_pred             HhhCCccchhH-HHhhhhHHHHHHhhhhhHHHhhhccccchhhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Q 014628          233 NIYHMSNADMM-FGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLV  311 (421)
Q Consensus       233 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  311 (421)
                      +.++.+..+.. +.......+.+...+.|.++||+|||     +..+...++....++.-. .++.+..++.=++.|...
T Consensus        62 ~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk-----~~cl~~cily~~scl~k~-~~~~~~L~~GRvlgGiaT  135 (354)
T PF05631_consen   62 ESYGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRK-----KACLLFCILYSLSCLTKH-SSNYPVLLLGRVLGGIAT  135 (354)
T ss_pred             HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCch-----HHHHHHHHHHHHHHHHHh-ccccHHHHHHHHHHHHHH
Confidence            45777765553 33445566777888889999999999     788777777777776443 355666666667777777


Q ss_pred             HhccCchhhh-hhcc----cCCchhhHHHHHHHHHHHhhcccCcchhHHHhhhcccc-chhhhHHHHHHHHHHHHH
Q 014628          312 FATQAPVNYV-CLHS----VKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNN-WRKTTLALTSIFFLAAGI  381 (421)
Q Consensus       312 ~~~~~~~~~~-~~~~----~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~g~-~~~~~~~~~~~~~~~~~~  381 (421)
                      ...+...-++ +.|.    +|++..+...+......+.+-++.+..+..++.+..+. ...+|.....+.+++.++
T Consensus       136 SLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~vaPF~~a~~~l~~~~~~  211 (354)
T PF05631_consen  136 SLLFSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFGFGPVAPFDAAIVLLAVAAVL  211 (354)
T ss_pred             HHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCCCcchHHHHHHHHHHHHHH
Confidence            7666655333 3332    44455555555442122332334445555566665542 345676666665555443

>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT)

Probab=98.00  E-value=0.0004  Score=63.62  Aligned_cols=55  Identities=13%  Similarity=0.038  Sum_probs=37.6

Q ss_pred             hhHHHHHHHHHHHHHHHhccCchhhhhhcccCCchhhHHHHHHHHHHHhhcccCcc
Q 014628          296 SLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSS  351 (421)
Q Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~  351 (421)
                      +.+..++..++.++..|-.......+..+.+++++|..+..+.+.+... |-.+|.
T Consensus       371 ~d~~~~~~~~l~gltnGy~~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~-Gl~~Gs  425 (437)
T TIGR00939       371 GDAYFIILMLLFGFSNGYLGSLSMCLAPRQVDPHEREVAGALMVIFLLV-GLALGA  425 (437)
T ss_pred             ccHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH-HHHHHH
Confidence            4555666677777777766666777778888888888777777544444 655555

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=97.91  E-value=0.00024  Score=62.69  Aligned_cols=111  Identities=17%  Similarity=0.065  Sum_probs=72.4

Q ss_pred             hhhhHHHHHHhhhhhHHHhhhc-----cccchhhHHHHHHHHHHHHHHHHH-----Hhhh-------hhH----HHHHHH
Q 014628          246 GVTIVCGIVGTISGGFILDQMG-----ATISNAFKLLSAATFLGAISCLTA-----FCLS-------SLY----GFLALF  304 (421)
Q Consensus       246 ~~~~~~~~~~~~~~g~l~d~~~-----~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~-------~~~----~~~~~~  304 (421)
                      .+..+.+ +.++..|+.+|+.+     ||.+    .+..+.+.........     ....       +.+    .....+
T Consensus        22 al~~~~a-p~R~~~G~~SD~~~s~~G~rRtP----yI~~G~~~~~~g~~~ap~a~~~l~~~~~~~~~~~~~g~~~a~l~F   96 (403)
T PF03209_consen   22 ALHYLVA-PLRVWFGHRSDTHPSILGWRRTP----YIWGGTLLQAGGLAIAPFALLLLAESGQQSSGPFWLGLALAALAF   96 (403)
T ss_pred             HHHHHHH-HHHHHhccccccCcccCcCCchh----hhHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHH
Confidence            3333333 46888999999988     5532    2322222222222111     1111       222    234445


Q ss_pred             HHHHHHHHhccCchhhhhhcccCCchhhHHHHHHHHHHHhhcccCcchhHHHhhhccc
Q 014628          305 TVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVN  362 (421)
Q Consensus       305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~g  362 (421)
                      .+.|.+.+....+..++..|..|+++|+++.++...+.- +|.+++..+.|.+.|.+.
T Consensus        97 ~l~G~G~~~s~T~~lALl~D~~~e~~R~~~v~ivw~Mli-~G~iv~ai~~g~lL~~~s  153 (403)
T PF03209_consen   97 LLYGLGVHASGTSFLALLADLAPEERRPRVVAIVWVMLI-VGIIVSAIVFGRLLDPFS  153 (403)
T ss_pred             HHHHhhHhHhHHHHHHHHHhcCCHhhhhhhHHHHHHHHH-HHHHHHHHHHHHHccccC
Confidence            567777778888889999999999999999999965554 499999999999988654

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=97.82  E-value=0.00052  Score=63.11  Aligned_cols=120  Identities=16%  Similarity=0.058  Sum_probs=80.7

Q ss_pred             hHHHHHHhhhhhHHHhhhccccchhhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhccCchhhhhhcccCC
Q 014628          249 IVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKP  328 (421)
Q Consensus       249 ~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  328 (421)
                      .+..++.+...|.++||+|||     ..+......+.+.........  ++..+... ...+.........+++++....
T Consensus        72 ~~~~~i~s~~iG~lSD~~grk-----~~L~~~~~~~~l~~~~~~~~~--~~~~~~~~-l~g~~~~~~s~~~a~vadis~~  143 (463)
T KOG2816|consen   72 GLLTLISSPLIGALSDRYGRK-----VVLLLPLFGTILPALCLLFQG--YWFFLLLG-LSGGFSAIFSVGFAYVADISSE  143 (463)
T ss_pred             HHHHHHHHhhhHHhhhhhhhh-----hhHHHHHHHHHHhHHHHHHHH--HHHhhhcc-cccchhhhhhhhhhheeeccch
Confidence            566778888999999999998     555555544444444433333  22222222 2233345566778899999989


Q ss_pred             chhhHHHHHHHHHHHhhcccCcchhHHHhhhccccchhhhHHHHHHHHHH
Q 014628          329 SLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFFLA  378 (421)
Q Consensus       329 ~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~  378 (421)
                      +.|....|+.+...+. +..++|.+.+.+.+..| +...+.+..+..+..
T Consensus       144 ~~R~~~~gll~~~~~~-~~~~~p~~~~~~~~~~~-~a~~f~ia~~~~~~~  191 (463)
T KOG2816|consen  144 EERSSSIGLLSGTFGA-GLVIGPALGGYLVKFLG-IALVFLIAAASGILS  191 (463)
T ss_pred             hHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHhcC-chHHHHHHHHHHHHH
Confidence            9999999999877777 77889999999988755 445555544443333

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=97.79  E-value=0.00047  Score=66.38  Aligned_cols=158  Identities=12%  Similarity=-0.011  Sum_probs=96.6

Q ss_pred             HHHHHHHhhHHHHHhhCCccchh-HHHhhhhHHHHHHhhhhhHHHhhh-ccccchhhHHHHHHHHHHHHHHHHHHhhh--
Q 014628          220 IGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQM-GATISNAFKLLSAATFLGAISCLTAFCLS--  295 (421)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  295 (421)
                      ++++...+..|+.+..+.+.... .+........-+..+++|+++|++ |++     +.+....++..++..++....  
T Consensus         3 yYGm~aiLvlYl~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~-----~tIl~~~ii~~lG~~llai~a~~   77 (654)
T TIGR00926         3 YYGMRTILVLYFLNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKF-----KTILYLSIVYVVGHALLSFGAIP   77 (654)
T ss_pred             eeecHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH-----HHHHHHHHHHHHHHHHHHhccCc
Confidence            45556666677777777765433 222333333445677889999975 665     555555555544444433221  


Q ss_pred             ------hhHHHHHHHHHHHHHHHhccCchhhhhhcccCCc---hhhHHHHHHHHHHHhhcccCcchhHHHhhhccc----
Q 014628          296 ------SLYGFLALFTVGELLVFATQAPVNYVCLHSVKPS---LRALSMAISTVSIHIFGDVPSSPLVGVLQDHVN----  362 (421)
Q Consensus       296 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~g----  362 (421)
                            .....++.+.+...+.+..-+...+...+.++++   .+.+...+.....+. |+.+++.+.+++.+..+    
T Consensus        78 ~~~~~~~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNi-GSlis~~i~~~l~~~~~~fg~  156 (654)
T TIGR00926        78 SSGHPLHDLLDLLGLALIALGTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINA-GSLISTIITPILRGDVGCFGC  156 (654)
T ss_pred             ccccchHHHHHHHHHHHHHhhccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhccccc
Confidence                  1123445566677777777788888888877653   466777777667777 88888888888875542    


Q ss_pred             --cchhhhHHHHHHHHHHHHHHH
Q 014628          363 --NWRKTTLALTSIFFLAAGIWF  383 (421)
Q Consensus       363 --~~~~~~~~~~~~~~~~~~~~~  383 (421)
                        +|...|.+.+++.+++.+++.
T Consensus       157 ~~~~~~aF~i~~i~m~ia~lvf~  179 (654)
T TIGR00926       157 QDCYPLAFGVPAILMILALIVFM  179 (654)
T ss_pred             CcchHHHHHHHHHHHHHHHHHHH
Confidence              355566665555555554444

>PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS)

Probab=97.73  E-value=0.00087  Score=55.26  Aligned_cols=55  Identities=11%  Similarity=0.050  Sum_probs=37.1

Q ss_pred             CCchhHHHHHHHHHHHHhhhHHHhHHhh---h--hcchhHHHHHHHHHHHHHHHHHHHhc
Q 014628           76 PQKTAWLSMFYMCIPTGVALGYVYGGVV---G--SHLNWRYAFWGEAILMLPFAVLAFVI  130 (421)
Q Consensus        76 ~~r~~~~~~~~~~~~~G~~~g~~~~~~l---~--~~~~wr~~f~~~~~~~~~~~~~~~~~  130 (421)
                      |+|+....+...+.++|.++.-...-.-   .  -.-+|++++.+.+++.++-+++..++
T Consensus         2 k~K~~~s~~n~~gf~iG~ii~~ipF~~~~~~~~~~~~~W~~I~si~~lL~~IpLIly~if   61 (267)
T PF07672_consen    2 KKKSILSQFNPWGFNIGTIIVNIPFLISSSVVIALTNNWQWILSIFILLIFIPLILYIIF   61 (267)
T ss_pred             CccceeeeeccccchhhHHHHHhhHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            5677777777888888887755432221   1  12359999999998877766666555

>KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only]

Probab=97.58  E-value=0.00086  Score=56.37  Aligned_cols=120  Identities=8%  Similarity=-0.122  Sum_probs=78.5

Q ss_pred             hHHHHhhhhcCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhhhhhhhccchhhhhhccCCCCCchhHHHHHHHH
Q 014628            9 PIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMC   88 (421)
Q Consensus         9 ~~~g~l~Dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~   88 (421)
                      +....+.||+---+=..+..++.+.+.++.+++++.++=+.+-.+..++.|.....-.++-+ .+++.    ..+.++.+
T Consensus        80 l~~Pff~~rfpf~~Ri~~~v~~sa~s~~lVafs~s~~~sL~GV~~aSissGlGEiTFL~lss-~Y~~~----~i~~WSSG  154 (409)
T KOG3880|consen   80 LTAPFFIHRFPFGFRIALVVLLSALSFFLVAFSNSVPMSLLGVVFASISSGLGEITFLALSS-RYPSI----VIAGWSSG  154 (409)
T ss_pred             HhchhhhhhcccchHHHHHHHHHhcceEEEEeccchhHHHhhhhhhhhcCCcceeehhhhhc-cCCCc----eeccccCC
Confidence            34455677764333345666777888899999999999888888888888866655444433 33332    34555566


Q ss_pred             HHHHhhhHHHhHHhhhh--cchhHHHHHHHHHHHHHHHHHHHhcccc
Q 014628           89 IPTGVALGYVYGGVVGS--HLNWRYAFWGEAILMLPFAVLAFVIKPL  133 (421)
Q Consensus        89 ~~~G~~~g~~~~~~l~~--~~~wr~~f~~~~~~~~~~~~~~~~~~p~  133 (421)
                      .+.+.++|..--..+.+  ..+-|...++...+.++.+...++.+++
T Consensus       155 TGgAGliGa~SYa~lT~~~~~spk~Tlli~l~lP~lfa~~yf~lL~~  201 (409)
T KOG3880|consen  155 TGGAGLIGASSYAFLTSWANLSPKSTLLIMLFLPALFAFAYFFLLKS  201 (409)
T ss_pred             CCcchhhhhhHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHHheeCC
Confidence            66556666554444444  3456788888877777777777776643

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=97.33  E-value=0.0031  Score=58.22  Aligned_cols=150  Identities=15%  Similarity=0.009  Sum_probs=85.4

Q ss_pred             hHHHHHhhCCccchh-HHHhhhhHHHHHHhhhhhHHHhhhccccchhhHHHHHHHHHHHHHHHHHHhh----hhhHHHHH
Q 014628          228 PKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCL----SSLYGFLA  302 (421)
Q Consensus       228 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~  302 (421)
                      ..++++.++.++.+. .+..+..+.- ...++.|.++|-+.-...+++..++++.+++..........    .+.....+
T Consensus        13 ~~~l~~~l~ls~~~~~~~~~~~~lPw-~~Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~~s~~~~~~   91 (433)
T PF03092_consen   13 YPFLKDDLGLSPAQLQRLSSLASLPW-SIKPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPASESSAAIAVV   91 (433)
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHhCch-HHhhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccccchhhhHHH
Confidence            346777788886544 2223322222 34678899999875221122244555555554333322222    23344444


Q ss_pred             HHHHHHHHHHhccCchhhhhhcccCC--chhhHHHHHHHHHHHhhcccCcchhHHHhhhccccchhhhHHHHHHHHHHHH
Q 014628          303 LFTVGELLVFATQAPVNYVCLHSVKP--SLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFFLAAG  380 (421)
Q Consensus       303 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~  380 (421)
                      .+++..++........-..+.|....  +.++.-.+....... +|++++..+.|.+.+..+ ++..+.+.+.+..+..+
T Consensus        92 ~l~la~~g~a~~DV~aDa~vvE~~~~~p~~~g~lqS~~~~~~~-~G~lv~~~l~G~l~~~~~-~~~~f~i~~~~~~l~~~  169 (433)
T PF03092_consen   92 LLFLASFGYAFADVAADALVVELARREPESRGDLQSFVWGVRS-VGSLVGSLLSGPLLDSFG-PQGVFLISAALPLLMLI  169 (433)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHhhcCCchhHHHHHHHHHHHH-HHHHHHHHhhhhhhhcCC-CeEEehHHHHHHHHHHH
Confidence            55555566666656666666666533  237777777754444 488889989999998865 55666666555444443

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>PF12832 MFS_1_like: MFS_1 like family

Probab=97.33  E-value=0.0023  Score=42.60  Aligned_cols=58  Identities=16%  Similarity=0.234  Sum_probs=46.3

Q ss_pred             HHHHHHHHHHHHHHHHhhHHHHHhhCCccchh-HHHhhhhHHHHHHhhhhhHHHhhhccc
Q 014628          211 LGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGAT  269 (421)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~  269 (421)
                      ..+++.......+.-|+|.|+++ .|.++.+. .+.++..+..+++.++.|+++||.+++
T Consensus         7 ~~yf~~f~~~g~~~Pfl~~~~~~-~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~   65 (77)
T PF12832_consen    7 AFYFFYFAALGCLYPFLPLYLKQ-LGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKR   65 (77)
T ss_pred             HHHHHHHHHHHHHHhhhhHhhhh-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcc
Confidence            34566667777888899999987 66776555 445777788999999999999999998

>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans

Probab=97.30  E-value=0.015  Score=44.83  Aligned_cols=102  Identities=6%  Similarity=-0.083  Sum_probs=75.0

Q ss_pred             hhhhHHHHHHhhhhhHHHhhhccccchhhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhccCchhhhhhcc
Q 014628          246 GVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHS  325 (421)
Q Consensus       246 ~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  325 (421)
                      .+......+..++.+.+.+++|.|     +.++++.+......... ..++.+..+....+.|++.+..+.....++.+.
T Consensus        44 ai~Y~~~~~s~l~~P~iv~~lg~K-----~sm~lg~~~y~~y~~~~-~~~~~~~l~~~s~l~G~~~a~lW~aqg~ylt~~  117 (156)
T PF05978_consen   44 AILYGSFAISCLFAPSIVNKLGPK-----WSMILGSLGYAIYIASF-FYPNSYTLYPASALLGFGAALLWTAQGTYLTSY  117 (156)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHhhH-----HHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHhhhhHHhhHhhhHHHHHc
Confidence            455566677788889999999998     67766666555444333 355677777888889999999999888888888


Q ss_pred             cCCchhhHHHHHHHHHHHhhcccCcchhH
Q 014628          326 VKPSLRALSMAISTVSIHIFGDVPSSPLV  354 (421)
Q Consensus       326 ~~~~~~~~~~g~~~~~~~~~g~~~~~~~~  354 (421)
                      ..++.+++-.++....... +.++|..+.
T Consensus       118 s~~~~~~~~~~ifw~i~~~-s~i~G~~~~  145 (156)
T PF05978_consen  118 STEETIGRNTGIFWAIFQS-SLIFGNLFL  145 (156)
T ss_pred             CCHHHHhhHHHHHHHHHHH-HHHHHHHHH
Confidence            8888999988887655554 656555443

UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=97.26  E-value=0.012  Score=52.72  Aligned_cols=128  Identities=10%  Similarity=-0.058  Sum_probs=80.4

Q ss_pred             HHhhHHHHHh-hCCccchhH--HHhhhhHHHHHHhhhhhHHHhhhccccchhhHHHHHHHHHHHHHHHHHHhhhhhHHHH
Q 014628          225 YWGPKAGYNI-YHMSNADMM--FGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFL  301 (421)
Q Consensus       225 ~~~~~~~~~~-~~~~~~~~~--~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  301 (421)
                      .|+..|+.+. .+.+..+..  +.-+..=..++..+....+.|.++.|     ..++...+.......++.+.++....-
T Consensus        24 Pfl~~yL~~~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l~Yk-----pviil~~~~~i~t~~lll~~~sv~~mq   98 (412)
T PF01770_consen   24 PFLTPYLTGPDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYLRYK-----PVIILQALSYIITWLLLLFGTSVLAMQ   98 (412)
T ss_pred             ccchHHHcCCccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhh-----HHHHHHHHHHHHHHHHHHHHCcHHHHH
Confidence            3555677666 677654432  11111123345566778899999988     777777776666666677777777666


Q ss_pred             HHHHHHHHHHHhccCchhhhhhcccCCchhhHHHHHHHHHHHhhcccCcchhHHHhhh
Q 014628          302 ALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQD  359 (421)
Q Consensus       302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~  359 (421)
                      +.-+..|..... -...++++-..+++++--++.+......- +|..++..++-.+..
T Consensus        99 ~~q~~yg~~~a~-evay~sYiys~v~~~~yq~vts~~raa~l-~g~~~s~~lgQllvs  154 (412)
T PF01770_consen   99 LMQFFYGLATAA-EVAYYSYIYSVVDKEHYQKVTSYTRAATL-VGRFISSLLGQLLVS  154 (412)
T ss_pred             HHHHHHHHHHHH-HHHHHHHheeecCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence            666666555543 44556777788888888888877754433 366666655444444

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=97.22  E-value=0.071  Score=48.75  Aligned_cols=172  Identities=14%  Similarity=0.041  Sum_probs=86.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhHHHHHhhCCccch-hHHHhhhhHHHHHHhhhhhHHHhhhccccchhhHHHH--HHHH
Q 014628          206 YVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNAD-MMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLS--AATF  282 (421)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~--~~~~  282 (421)
                      .+.+....++..+..-...+-.|.++.+.+..+-.. ..+.....+..++.....|.+.||..|.+.-+.....  .+..
T Consensus         4 ~~~Ly~sh~ls~w~dR~w~Fa~~L~L~~i~p~sLl~~siygl~~~~~~~~f~~~vG~~iD~~~Rl~~~~~~l~~Qn~sv~   83 (432)
T PF06963_consen    4 LWRLYLSHFLSTWGDRMWEFAVPLFLISIFPGSLLPVSIYGLVRSLSAILFGPWVGRWIDRSPRLKVIRTSLVVQNLSVA   83 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhhHHHHHHHhCCcchhhHHHHHHHHHHHHH
Confidence            344566667777777777788888888886655222 2334445566677788889999999876332111111  1222


Q ss_pred             HHHHHHHHHHhhhh-----hHHHHHHH---HHHHHHHHhccC-----chhhhhhccc--CCchhhHHHHHHHHHHHhhcc
Q 014628          283 LGAISCLTAFCLSS-----LYGFLALF---TVGELLVFATQA-----PVNYVCLHSV--KPSLRALSMAISTVSIHIFGD  347 (421)
Q Consensus       283 ~~~~~~~~~~~~~~-----~~~~~~~~---~~~~~~~~~~~~-----~~~~~~~~~~--~~~~~~~~~g~~~~~~~~~g~  347 (421)
                      .+...+........     .+....++   .+.+........     .---++....  +++...+.++... -...+.-
T Consensus        84 ~s~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~i~~Las~~~~iavERDWVvvi~~~~~~~La~~NA~mR-RIDL~ck  162 (432)
T PF06963_consen   84 ASCALFLLLLSYPSSSSQSSWLFIALFALLILLGAIERLASIANTIAVERDWVVVIAGGDPGALARMNATMR-RIDLFCK  162 (432)
T ss_pred             HHHHHHHHHHhCCccccccchHHHHHHHHHHHHHHHHHHHHhhhhheeccchhhhhcCCChhhHHHHHHHHH-HHHHHHH
Confidence            22222222221111     12211111   111111111111     1111122222  3345555666653 3455678


Q ss_pred             cCcchhHHHhhhccccchhhhHHHHHHHHHHH
Q 014628          348 VPSSPLVGVLQDHVNNWRKTTLALTSIFFLAA  379 (421)
Q Consensus       348 ~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~  379 (421)
                      +++|.+.|.+.+..+ +.....+.++..++..
T Consensus       163 llaPl~vG~l~t~~s-~~~~~~~i~~~N~~S~  193 (432)
T PF06963_consen  163 LLAPLFVGLLMTFAS-PVIAAIFIAGWNLASV  193 (432)
T ss_pred             HHHHHHHHHHhhccC-HHHHHHHHHHHHHHHH
Confidence            899999999998765 4444444444444444

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=97.20  E-value=0.0046  Score=55.28  Aligned_cols=121  Identities=18%  Similarity=0.174  Sum_probs=67.4

Q ss_pred             HHHHhhCCccchhHHHhhhhHHHHHHhhhhhHHHhhhccccchhhHHHHHHHHHHHHHHHHHHhh------hhhHHHHHH
Q 014628          230 AGYNIYHMSNADMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCL------SSLYGFLAL  303 (421)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~  303 (421)
                      +..+.|+.+.....+..++.+.+++..+.+.|+.||+|-|     .....+...-.++..+=...      +..+ . -+
T Consensus        70 ~~~~~Ygs~~~~~wlsmIym~v~vp~gf~~mw~ldk~GLR-----~a~llgt~ln~iGa~Ir~iss~p~v~~~f~-~-~l  142 (480)
T KOG2563|consen   70 YVNSFYGSSSAADWLSMIYMVVSVPFGFAAMWILDKFGLR-----TALLLGTVLNGIGAWIRLISSLPFVPPLFR-R-PL  142 (480)
T ss_pred             HHHHHhcchHHHHHHHHHHHHHHHHHhhHHHHhhcccchH-----HHHHHHHHHHHHHHHHhhhccCccccccch-h-hh
Confidence            4455555444444666788889999999999999999998     55555555555444432221      1222 1 12


Q ss_pred             HHHHHHHHHhccCch----hhhhhcccCCchhhHHHHHHHHHHHhhcccCcchhHHHhh
Q 014628          304 FTVGELLVFATQAPV----NYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQ  358 (421)
Q Consensus       304 ~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~  358 (421)
                      ...+....+..++-.    .-+...-+++++|+++..+..+.. -+|.+++..+-+.+.
T Consensus       143 ~~~Gq~iaa~Aq~Fim~lPskiA~~WF~~~qra~A~~~~v~~n-~LGvavg~llppilV  200 (480)
T KOG2563|consen  143 THTGQSIAAAAQPFILGLPSKIAAVWFPPDQRAIATVLGVMGN-PLGVAVGFLLPPILV  200 (480)
T ss_pred             hHHhHHHHHHhhhHhhccccHHHHhhCCcchhhhhhhHHHhcc-hHHHHHHhhccceec
Confidence            222222222222221    223334478899999999884443 335555444444443

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=97.13  E-value=6.2e-05  Score=70.84  Aligned_cols=133  Identities=10%  Similarity=0.005  Sum_probs=1.6

Q ss_pred             HHHHHHHhhHHHHHhhCCccchh-HHHhhhhHHHHHHhhhhhHHHhhhccccchhhHHHHHHHHHHHHHHHHHHhhh---
Q 014628          220 IGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLS---  295 (421)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---  295 (421)
                      ..++..-.-.-.++.++.+..+. .+.+..-++.++..++..++.+|..|.     +++..+.++.+++.++....+   
T Consensus        18 ~~g~~~~~lttiErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~hrp-----rwig~g~~~~~~g~~l~~lPhf~~   92 (539)
T PF03137_consen   18 VSGYVNSSLTTIERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRGHRP-----RWIGIGALLMGLGSLLFALPHFLS   92 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCc-----ceeeecHHHHHHHHHHHhccHhhc
Confidence            33333333334677788876555 344666688888888778887775554     555555555544444332100   


Q ss_pred             -----------------------------------------------hhHHHHHHHHHHHHHHHhccCchhhhhhcccCC
Q 014628          296 -----------------------------------------------SLYGFLALFTVGELLVFATQAPVNYVCLHSVKP  328 (421)
Q Consensus       296 -----------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  328 (421)
                                                                     ..+.+++..++.|++....++...+++-|.+++
T Consensus        93 ~~y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~  172 (539)
T PF03137_consen   93 GPYSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDDNVSK  172 (539)
T ss_dssp             -----------------------------------------------------------SSS------------------
T ss_pred             CCCccccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeecccccc
Confidence                                                           012223334445555555666667778888888


Q ss_pred             chhhHHHHHHHHHHHhhcccCcchhHHHhh
Q 014628          329 SLRALSMAISTVSIHIFGDVPSSPLVGVLQ  358 (421)
Q Consensus       329 ~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~  358 (421)
                      +..+...|+.. ....+|-++|-.+++...
T Consensus       173 ~~splYiGi~~-~~~~lGPa~Gf~lg~~~L  201 (539)
T PF03137_consen  173 KNSPLYIGILY-AMSILGPALGFLLGSFCL  201 (539)
T ss_dssp             ------------------------------
T ss_pred             ccCccchhhhh-HHhhccHHHHHHHHHHHH
Confidence            88888888874 444446666655555444

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]

Probab=97.08  E-value=0.0079  Score=53.90  Aligned_cols=149  Identities=10%  Similarity=-0.012  Sum_probs=89.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhHHHHHhhCCccchhHHHhhhhHHHHHHhhhhhHHHhhhccccchhhHHHHHHHHHHH
Q 014628          206 YVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGA  285 (421)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~  285 (421)
                      ........+...+++..-..|.|.|+++.+-............-+.+++..++.|..+||...|..++|..+....+...
T Consensus        34 li~v~~ia~Gvqf~wA~elsy~tPyl~~lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~~i~  113 (498)
T KOG0637|consen   34 LISVASIAAGVQFGWALELSYLTPYLQSLGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSLLIA  113 (498)
T ss_pred             HHHHHHHHHHHHHHHHHHhccccHHHHHcCCCcccccccccccccccceecccccccccccccccccccchHHHhhHHHH
Confidence            33334444555666666778899999886544433333333444667778889999999765444433455544444444


Q ss_pred             HHHHHHHhhh-----------------hhHHHHHHHHHHHHHHHhccCchhhhhhcccCCchhhH-HHHHHHHHHHhhcc
Q 014628          286 ISCLTAFCLS-----------------SLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRAL-SMAISTVSIHIFGD  347 (421)
Q Consensus       286 ~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~g~  347 (421)
                      +.+.+..+..                 .....++.+.+.-+.......+.-++..|...++++.+ +++....+... |+
T Consensus       114 ~~l~Lig~aaDig~~lgd~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~Ans~f~~f~av-Gn  192 (498)
T KOG0637|consen  114 VSLFLIGYAADIGLLLGDNERKPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAKKTRANSVFSFFMAV-GN  192 (498)
T ss_pred             HHHhhhhhHhhhhHHhcCCcccccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhhccchhHHHHHHh-cc
Confidence            4433333221                 11223334444555666788899999999988876666 88888555555 87


Q ss_pred             cCcchhHH
Q 014628          348 VPSSPLVG  355 (421)
Q Consensus       348 ~~~~~~~g  355 (421)
                      .+|-.+.+
T Consensus       193 vLGY~~g~  200 (498)
T KOG0637|consen  193 VLGYALGS  200 (498)
T ss_pred             eeeeeccc
Confidence            77765444

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=96.75  E-value=0.11  Score=48.13  Aligned_cols=56  Identities=7%  Similarity=-0.051  Sum_probs=39.1

Q ss_pred             HHHHHHHHHHHhccC-chhhhhhcccCCchhhHHHHHHHHHHHhhcccCcchhHHHhh
Q 014628          302 ALFTVGELLVFATQA-PVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQ  358 (421)
Q Consensus       302 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~  358 (421)
                      +.............+ ..+..+.|...+++..+-.++.....+. |.++++.+..++.
T Consensus       133 ~FYv~~elw~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganl-g~i~sg~~~~~~~  189 (472)
T TIGR00769       133 LFYVMAELWGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANV-ALIFSGRTIKYFS  189 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence            344444444444444 5577788888888999999999666565 8888887877776

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs

Probab=96.45  E-value=0.00063  Score=59.64  Aligned_cols=55  Identities=18%  Similarity=0.061  Sum_probs=2.7

Q ss_pred             hhHHHHHHHHHHHHHHHhccCchhhhhhcccCCchhhHHHHHHHHHHHhhcccCcc
Q 014628          296 SLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSS  351 (421)
Q Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~  351 (421)
                      +.+..++..++.++..|-..+..+.+..+.+++++|..+..+....... |-.+|.
T Consensus       247 ~d~~~~i~~~l~g~TNGyl~tl~m~~~p~~v~~~e~e~aG~~~~~~L~~-Gl~~Gs  301 (309)
T PF01733_consen  247 SDAWFIILMLLFGFTNGYLSTLAMMYAPKSVSPEERELAGSVMSFFLSF-GLFIGS  301 (309)
T ss_dssp             --------------------HHHH--------------------------------
T ss_pred             chHHHHHHHHHHHHccchhhhceeeeCCCcCCHHHHHHHHHHHHHHHHH-HHHHHH
Confidence            4455566666677777666666677777888887777776666444443 655555

Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A.

>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]

Probab=96.45  E-value=0.063  Score=46.80  Aligned_cols=133  Identities=17%  Similarity=0.052  Sum_probs=77.4

Q ss_pred             HHHHhhHHHHHhhCCcc--chhHHHhhhhHHHHHHhhhhhHHHhhhccccchhhHHHHHHHHHHHHHHHHHHhhh--hhH
Q 014628          223 YSYWGPKAGYNIYHMSN--ADMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLS--SLY  298 (421)
Q Consensus       223 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~  298 (421)
                      .....+.+..+......  ..........+...++.+..|.+.||.|||     +.............+......  ..+
T Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (338)
T COG0477          21 LSPALPLLLSTLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRYGRR-----KVLIIGLLLFLLGTLLLALAPNVGLA   95 (338)
T ss_pred             HHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhhhhhhccccccch-----HHHHHHHHHHHHHHHHHHhCccchHH
Confidence            33444555444333321  122334555666777779999999999887     444433322222222222222  244


Q ss_pred             HHHHHHHHHHHHHHhccCchhhhhhcccCC-chhhHHHHHHHHHHHhhcccCcchhHHHhhhc
Q 014628          299 GFLALFTVGELLVFATQAPVNYVCLHSVKP-SLRALSMAISTVSIHIFGDVPSSPLVGVLQDH  360 (421)
Q Consensus       299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~  360 (421)
                      ...+.....+.+.+...+....+..+..|+ +.|+...+.........|..++|.+.+.+.+.
T Consensus        96 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (338)
T COG0477          96 LLLILRLLQGLGGGGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGA  158 (338)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444444445666666777778888888877 67888888875533444777777666666654

>KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism]

Probab=96.43  E-value=0.14  Score=45.76  Aligned_cols=61  Identities=18%  Similarity=0.037  Sum_probs=37.7

Q ss_pred             hhhHHHHHHHHHHHHHHHhccCchhhhhhcccCCchhhHHHHHHHHHHHhhcccCcchhHHHh
Q 014628          295 SSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVL  357 (421)
Q Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l  357 (421)
                      .+.+..+....+.++..|-..+..+.+..+.++++++..+-.+.. +.-..|-..|. +.+++
T Consensus       341 ~~~~~~~~l~~~lglsnGYltsl~m~~aPk~v~~~e~e~aG~~m~-~fl~~Gl~~G~-~~s~l  401 (406)
T KOG1479|consen  341 ESDGWFIFLMSLLGLSNGYLTSLIMMYAPKQVKPSEKEAAGNLMV-FFLVGGLALGS-LLSWV  401 (406)
T ss_pred             cCchHHHHHHHHHHhccchHhhheehhcCCCCChHHHHHHHHHHH-HHHHHHHHHhh-HHHHH
Confidence            355566667777777776666666777888888877666666653 33333555544 44444

>KOG2601 consensus Iron transporter [Inorganic ion transport and metabolism]

Probab=96.30  E-value=0.018  Score=50.19  Aligned_cols=118  Identities=14%  Similarity=0.069  Sum_probs=65.1

Q ss_pred             cchhhHHHHhhhhcCCchHHHHHHHHHHHHHhhhh------hhh------hHHHHHHHHHHh----hhhhhhhccchhhh
Q 014628            5 LVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCG------SSF------DFWSIAICRMLV----GVGEASFISLAAPF   68 (421)
Q Consensus         5 ~i~~~~~g~l~Dr~Grr~~~~~~~~~~~~~~~~~~------~~~------~~~~l~~~r~l~----G~~~~~~~~~~~~~   68 (421)
                      .+..++.|...|+..|+|++...+.+.-++.+.++      +.+      ++..+..+-++.    .++.-........+
T Consensus        77 lvlg~ivGq~vDg~sr~Kvi~~~L~lqNlSv~vagglvi~~l~~~~~~~~t~pv~t~~lvLa~~i~aI~~Las~A~~i~i  156 (503)
T KOG2601|consen   77 LVLGPIVGQWVDGMSRVKVIQTWLLLQNLSVIVAGGLVITLLVHKDLKSATSPVFTVCLVLANLIAAIAVLASLAGTILI  156 (503)
T ss_pred             HhhHHHHHHHhcchhHHHHHHHHHhhccHHHHHHHHHHhhheeecchhcccccHHHHHHHHHHHHHHHHHHHHhhheEEe
Confidence            45567789999999999998877655433333322      222      344433333332    22222222222223


Q ss_pred             hhccC----CCCCchhHH---HHHHHHHHHHhhhHHHhHHhhhhcchhHHHHHHHHHHHHH
Q 014628           69 IDDNA----PVPQKTAWL---SMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLP  122 (421)
Q Consensus        69 i~~~~----~~~~r~~~~---~~~~~~~~~G~~~g~~~~~~l~~~~~wr~~f~~~~~~~~~  122 (421)
                      -.||.    ..+.+....   +.....-..-..+.|.+.|.+.+..+-|..-.+.++-+++
T Consensus       157 ~RDWvvV~s~g~s~s~lt~mnatir~iDq~tn~Lapv~tg~Iitfvsl~~~~g~f~~w~~v  217 (503)
T KOG2601|consen  157 ERDWVVVMSEGESPSVLTNMNATIRGIDQSTNLLAPVITGLIITFVSLRASAGTFAAWALV  217 (503)
T ss_pred             cccEEEEecCCCCHHHHhhcchhhhhhhhhhhchhhhhhcccceeechhhhhhhhHHHHHH
Confidence            34553    233344433   4444455556688899999998887777655555544444

>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.12  E-value=0.035  Score=53.50  Aligned_cols=124  Identities=11%  Similarity=-0.020  Sum_probs=68.8

Q ss_pred             HHHHHhhCCccchh-HHHhhhhHHHHHHhhhhhHHHhhhccccchhhHHHHHHHHHHHHHHHHHHhh-------------
Q 014628          229 KAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCL-------------  294 (421)
Q Consensus       229 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------  294 (421)
                      .-.++.++.+.... .+....-++..+......++..|..|.     +++..+.++.++..++....             
T Consensus       121 ttiErRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~HrP-----r~Ig~G~~~m~lgsll~alPHf~~~~y~~~~~~  195 (735)
T KOG3626|consen  121 TTIERRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSRGHRP-----RWIGIGLVLMGLGSLLFALPHFFSGPYEYELEV  195 (735)
T ss_pred             hhhhhhcCCCCCcceeEeeecccchhhhhHhHHHhccccCcc-----ceeeechhHHHHHHHHHhChHHhcCcchhhhhh
Confidence            34567777765444 333555577777777777777777665     55544444444444333220             


Q ss_pred             -----------------------------------hh----hHHHHHHHHHHHHHHHhccCchhhhhhcccCCchhhHHH
Q 014628          295 -----------------------------------SS----LYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSM  335 (421)
Q Consensus       295 -----------------------------------~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  335 (421)
                                                         .+    +..++...++.|.+....++...+++-|.+.+++.+...
T Consensus       196 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~tlGisYiDDnvk~~~SplYl  275 (735)
T KOG3626|consen  196 IKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIFTLGISYIDDNVKKKNSPLYL  275 (735)
T ss_pred             hhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCccCCCccccccccccCCcHHH
Confidence                                               00    112223333344444455555566777777777888888


Q ss_pred             HHHHHHHHhhcccCcchhHHHhh
Q 014628          336 AISTVSIHIFGDVPSSPLVGVLQ  358 (421)
Q Consensus       336 g~~~~~~~~~g~~~~~~~~g~l~  358 (421)
                      |+.+ .+..+|-++|-.+++...
T Consensus       276 gi~~-~~~~lGPaiGfllgS~~l  297 (735)
T KOG3626|consen  276 GILY-SMAILGPAIGFLLGSFCL  297 (735)
T ss_pred             HHHH-HHHHhhhHHHHHHHHHHH
Confidence            8884 445546555554545443

>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters

Probab=96.10  E-value=0.061  Score=36.25  Aligned_cols=78  Identities=15%  Similarity=0.116  Sum_probs=54.0

Q ss_pred             HHHHHHHHHHhhHHHHHhhCCccchh-HHHhhhhHHHHHHhhhhhHHHhhhccccchhhHHHHHHHHHHHHHHHHHHhhh
Q 014628          217 NFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLS  295 (421)
Q Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  295 (421)
                      ..+-+.+...+|...++ .+.+..+. .+.+...++..+|.+...++.++..++     +.+..+.+........+...+
T Consensus         5 GigRFayTplLP~M~~~-~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~ma~~~   78 (85)
T PF06779_consen    5 GIGRFAYTPLLPLMQAD-GGLSLSQAGWLASANYLGYLVGALLASRLPRHSRPR-----RLLRAGLLLTVLSTAAMALTH   78 (85)
T ss_pred             hhHHHHHHhHhHHHHHh-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHH-----HHHHHHHHHHHHHHHHHHHHh
Confidence            34455666677876555 66665444 666888899999999999888875555     666777777777776666666


Q ss_pred             hhHHH
Q 014628          296 SLYGF  300 (421)
Q Consensus       296 ~~~~~  300 (421)
                      +.+.+
T Consensus        79 ~~~~w   83 (85)
T PF06779_consen   79 SFWLW   83 (85)
T ss_pred             chHHH
Confidence            55443

Note that many members are hypothetical proteins.

>PRK03612 spermidine synthase; Provisional

Probab=95.84  E-value=0.62  Score=44.17  Aligned_cols=59  Identities=8%  Similarity=-0.067  Sum_probs=32.1

Q ss_pred             HHHHHHHHHhccCchhhhhhcccCCchhhHHHHHHHHHHHhhcccCcchhHHHhhh-ccccc
Q 014628          304 FTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQD-HVNNW  364 (421)
Q Consensus       304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~-~~g~~  364 (421)
                      .++.+++.++..|....+..+.. .+..+...|-.+ ..+.+|+++|+.+.+++.- ..|..
T Consensus       117 ~~~~~~l~G~~~Pl~~~~~~~~~-~~~~g~~~g~ly-~~ntlGa~~G~l~~~~vLlp~lG~~  176 (521)
T PRK03612        117 VLLIGLLIGMEIPLLMRILQRIR-DQHLGHNVATVL-AADYLGALVGGLAFPFLLLPRLGLI  176 (521)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcc-ccchhhhhhhhH-hHHhHHHHHHHHHHHHHHHHhcchH
Confidence            33445666666555444443322 222345555553 4455588888888877755 45533

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.83  E-value=0.087  Score=48.27  Aligned_cols=99  Identities=15%  Similarity=0.198  Sum_probs=76.6

Q ss_pred             cccchhhHHHHhhh---hcCCchHHHHHHHHHHHHHhhhhhh------------------hhHHHHHHHHHHhhhhhhhh
Q 014628            3 GLLVASPIFASLAK---SHNPFRLIGVGLSVWTFATAGCGSS------------------FDFWSIAICRMLVGVGEASF   61 (421)
Q Consensus         3 g~~i~~~~~g~l~D---r~Grr~~~~~~~~~~~~~~~~~~~~------------------~~~~~l~~~r~l~G~~~~~~   61 (421)
                      |..+++.+.+.+.+   ++||++++.++..+..++.++.-..                  +++...++.-++.|++.+..
T Consensus       291 g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~~~~~li~l~~p~dap~~~t~~~~~~~~~~~~~~~ii~~l~G~~D~~~  370 (461)
T KOG3098|consen  291 GEVIGGLDFSILSKRIRGFGRKPTVLIGIIIHLIGFLLIHLSFPNDAPLRPTDSPPLLFTPSYYLALIIGFLLGFGDACF  370 (461)
T ss_pred             HHHHHHHHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhccccccCCCCCCcccccccccchhHHHHHHHHHhhHHHHH
Confidence            34455666666664   5899999999988888877775432                  34667788889999999999


Q ss_pred             ccchhhhhhccCCCCCchhHHHHHHHHHHHHhhhHHHhHHh
Q 014628           62 ISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGV  102 (421)
Q Consensus        62 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~  102 (421)
                      ....+.++.+.+ +++|..+.++...-..++..++-.....
T Consensus       371 ~t~~~~ii~~~~-~~~~~~~fsi~kfyq~~~s~v~~f~~~~  410 (461)
T KOG3098|consen  371 NTQRYVIIALLY-PDDRAQAFSLFKFYQSVASCVAFFFSPY  410 (461)
T ss_pred             HHHHHHHHHHHh-cCchHHHHHHHHHHHHHHHHHHhhhhhh
Confidence            999999999999 5668889998888888777666555443

>KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism]

Probab=95.73  E-value=0.48  Score=42.54  Aligned_cols=116  Identities=8%  Similarity=-0.061  Sum_probs=50.3

Q ss_pred             HHHHHHHHHHHhhHHHHHhhCCccchhHHHhhhhHHHHHHhhhhhHHHhhhccccchhhHHHHHHHHHHHHHHHHHHh--
Q 014628          216 YNFVIGAYSYWGPKAGYNIYHMSNADMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFC--  293 (421)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  293 (421)
                      .....+.+.+-.+.|.++..+.+. +..+.....+.+.+..++...+--+...|.+.+.........+..+..+....  
T Consensus        30 ~LlpWN~fiTa~~y~~~~~~~~~~-~~~F~~~~~~~a~i~~ll~~~~n~~~~~~~~~~~~~~l~~~~il~i~~l~~~~v~  108 (406)
T KOG1479|consen   30 TLLPWNMFITASDYYYYRFPGYHN-SKNFTSSYTLAAQIPLLLFNLLNAFLNTRLRTRVGYLLSLIAILFIVTLDLALVK  108 (406)
T ss_pred             cccchHhhhccHHHHHhhcCCCch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            334466666666666555444444 43444444444444444444444443333211111111111111111111111  


Q ss_pred             h-----hhhHHHHHHHHHHHHHHHhccCchhhhhhcccCCchhhH
Q 014628          294 L-----SSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRAL  333 (421)
Q Consensus       294 ~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  333 (421)
                      .     ......++...+.+.+.+...+..+..... +|++....
T Consensus       109 ~~~~~~~ff~vt~~~vv~~~~a~a~~qgs~~G~a~~-~P~~ytqa  152 (406)
T KOG1479|consen  109 TDTWTNGFFLVTLIIVVLLNLANAVVQGSLYGLAGL-FPSEYTQA  152 (406)
T ss_pred             cCCccchhHHHHHHHHHHHhhhhhhhccchhhhhhc-CCHHHHHH
Confidence            1     123334445555666666666666655444 67765443

>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions

Probab=95.48  E-value=0.8  Score=42.87  Aligned_cols=57  Identities=11%  Similarity=0.005  Sum_probs=36.0

Q ss_pred             HHHHHHHHHHHhccCc-hhhhhhcccCCchhhHHHHHHHHHHHhhcccCcchhHHHhhh
Q 014628          302 ALFTVGELLVFATQAP-VNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQD  359 (421)
Q Consensus       302 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~  359 (421)
                      +..+..-.......+. .+..+.+....++..+-.++.....+. |.+++..+..++.+
T Consensus       148 lfYv~aElwgsvvlSlLFW~fAN~itt~~eAKRfYpl~g~gani-gli~sG~~~~~~~~  205 (491)
T PF03219_consen  148 LFYVMAELWGSVVLSLLFWGFANEITTVEEAKRFYPLFGLGANI-GLIFSGQLTSYFSS  205 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence            3333333333343442 466677777778889999999666666 77777766666666

One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane

>PRK03612 spermidine synthase; Provisional

Probab=95.34  E-value=0.13  Score=48.64  Aligned_cols=77  Identities=13%  Similarity=-0.032  Sum_probs=50.1

Q ss_pred             HHHHHHhhhhhhhhccchhhhhhccCCCCCchhHHHHHHHHHHHHhhhHHHhHHhhh-hcchhHHHHHHHHHHHHHHHH
Q 014628           48 AICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVG-SHLNWRYAFWGEAILMLPFAV  125 (421)
Q Consensus        48 ~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~-~~~~wr~~f~~~~~~~~~~~~  125 (421)
                      +..-++.++..|+..|....+..+... ++-++..|..+....+|.++|.++.+++. +.+|-....++.+.+.+..++
T Consensus       114 ~~~~~~~~~l~G~~~Pl~~~~~~~~~~-~~~g~~~g~ly~~ntlGa~~G~l~~~~vLlp~lG~~~t~~~~a~l~~~~a~  191 (521)
T PRK03612        114 YVLVLLIGLLIGMEIPLLMRILQRIRD-QHLGHNVATVLAADYLGALVGGLAFPFLLLPRLGLIRTAALTGSLNLLAAL  191 (521)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccc-cchhhhhhhhHhHHhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence            334556677888887777766655332 23567788888899999999999887754 456654444444444444443

>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters

Probab=95.22  E-value=0.02  Score=38.50  Aligned_cols=47  Identities=28%  Similarity=0.508  Sum_probs=43.0

Q ss_pred             ccccchhhHHHHhhhhcCCchHHHHHHHHHHHHHhhhhhhhhHHHHH
Q 014628            2 VGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIA   48 (421)
Q Consensus         2 lg~~i~~~~~g~l~Dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~   48 (421)
                      +||.+|++...++.++..+++.+..+.+...+..+.+++.++.+.+.
T Consensus        38 ~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~~~~~~~w~   84 (85)
T PF06779_consen   38 LGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMALTHSFWLWS   84 (85)
T ss_pred             HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhchHHHh
Confidence            68999999999999998899999999999999999999999887653

Note that many members are hypothetical proteins.

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=95.15  E-value=0.093  Score=47.22  Aligned_cols=68  Identities=12%  Similarity=0.080  Sum_probs=60.6

Q ss_pred             hhhhhhHHHHHHHHHHhhhhhhhhccchhhhhhccCCCCCchhHHHHHHHHHHHHhhhHHHhHHhhhh
Q 014628           38 CGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGS  105 (421)
Q Consensus        38 ~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~  105 (421)
                      .-+.++.|.+++.-+..|+..|..+......+.|-.++++|..+++..+.+-++|..++.+++-.+-+
T Consensus       329 ~~fipsi~ivf~lif~eGLlGGa~YVNtF~~I~~~~~~~~REFslg~vsvsds~GI~lAgll~l~le~  396 (402)
T PF02487_consen  329 YRFIPSIWIVFVLIFYEGLLGGASYVNTFYRISEEVPPEDREFSLGAVSVSDSLGILLAGLLGLPLEP  396 (402)
T ss_pred             HHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence            33568899999999999999999999999999999999999999999999999999999988876543

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters

Probab=94.73  E-value=0.11  Score=47.03  Aligned_cols=86  Identities=15%  Similarity=0.055  Sum_probs=66.4

Q ss_pred             HHHHHHHHHHHHHHHhccCchhhhhhcccCCc---hhhHHHHHHHHHHHhhcccCcchhHHHhhhccccchhhhHHHHHH
Q 014628          298 YGFLALFTVGELLVFATQAPVNYVCLHSVKPS---LRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSI  374 (421)
Q Consensus       298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~  374 (421)
                      ..+.+.+.+...+.++.=+.......|.++++   .|.+.........+. |..+++...+++.++.| |...|.+.++.
T Consensus        34 ~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~in~-G~~~~~~~~~~i~~~~~-~~~~f~i~~~~  111 (372)
T PF00854_consen   34 GLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGINI-GSLFSPTLVPYIQQNYG-WFLGFGIPAIG  111 (372)
T ss_dssp             CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHHHH-HHHHHHHCCCHHHHCS--HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHHhh-hhHhhcccchhhccccc-hhhhhhHHHHH
Confidence            45667777788888888888899999988875   566677777777787 88888888999998866 77888888877


Q ss_pred             HHHHHHHHHHh
Q 014628          375 FFLAAGIWFVG  385 (421)
Q Consensus       375 ~~~~~~~~~~~  385 (421)
                      .+++.+.++..
T Consensus       112 ~~~~~~~f~~~  122 (372)
T PF00854_consen  112 MLLALIVFLSG  122 (372)
T ss_dssp             HHHHHHHHHCC
T ss_pred             HHHHHHHHHhC
Confidence            77777666543

The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.

>PF12832 MFS_1_like: MFS_1 like family

Probab=94.06  E-value=0.057  Score=35.90  Aligned_cols=28  Identities=21%  Similarity=0.323  Sum_probs=23.2

Q ss_pred             ccchhhHHHHhhhhcCCchHHHHHHHHH
Q 014628            4 LLVASPIFASLAKSHNPFRLIGVGLSVW   31 (421)
Q Consensus         4 ~~i~~~~~g~l~Dr~Grr~~~~~~~~~~   31 (421)
                      ..++++++|.++||+++++.++....++
T Consensus        48 ~~~~~pl~g~laDk~~~~~~~l~~~~~~   75 (77)
T PF12832_consen   48 RFLAPPLWGFLADKFGKRKVILLGSLFM   75 (77)
T ss_pred             HHHHHHHHHHHHHHHCccHHHHHHHHHH
Confidence            3578999999999999999887766554

>KOG3097 consensus Predicted membrane protein [Function unknown]

Probab=91.60  E-value=8.8  Score=33.60  Aligned_cols=70  Identities=7%  Similarity=0.111  Sum_probs=55.2

Q ss_pred             ccchhhHHHHhhhhcCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhhhhhhhccchhhhhhccCC
Q 014628            4 LLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAP   74 (421)
Q Consensus         4 ~~i~~~~~g~l~Dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~   74 (421)
                      .+..+++.+.+..++|-|.++.++...+...-. .=+=+.+..++-.-...|++.+..+..--+|+++.-.
T Consensus        71 l~~s~m~~~~~Ir~~g~K~tm~lav~~Y~lyiA-~Nl~pr~~tlVPa~~~~G~aa~p~W~SkgtYlT~~g~  140 (390)
T KOG3097|consen   71 LIDSSMFMPLLIRFLGTKWTMVLAVFPYALYIA-ANLEPRYETLVPAGLVLGMAAGPIWASKGTYLTPMGQ  140 (390)
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH-hhcchhHHhhccHHHhhccccccccccCcceecHHHH
Confidence            355677888899999999999998887765332 2344678899999999999999999887777776644

>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]

Probab=91.34  E-value=1.2  Score=41.22  Aligned_cols=39  Identities=21%  Similarity=0.108  Sum_probs=23.0

Q ss_pred             hhhhhhcccCCchhhHHHHHHHHHHHhhcccCcchhHHHh
Q 014628          318 VNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVL  357 (421)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l  357 (421)
                      .-.+......+++++-|........+. |.+++-.++=.+
T Consensus       139 VDGWALT~Ls~~n~~~ASTcqtvG~~~-Gyfls~tvFlal  177 (544)
T PF13000_consen  139 VDGWALTMLSPENVGYASTCQTVGQTA-GYFLSFTVFLAL  177 (544)
T ss_pred             eehhhhhhcChhhcchHHHHHHhHhhh-hHHHHHHHHHhh
Confidence            445556667778787777776444444 766655444333

This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane

>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism]

Probab=91.28  E-value=2.6  Score=37.56  Aligned_cols=139  Identities=13%  Similarity=0.100  Sum_probs=62.5

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhCCccch-hHHHhhhhHHHHHHhhhhhHHHh-----hhccccchhhHHH
Q 014628          204 KVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNAD-MMFGGVTIVCGIVGTISGGFILD-----QMGATISNAFKLL  277 (421)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~l~d-----~~~~~~~~~~~~~  277 (421)
                      +.+..+.+.+...+..+.... -+|.+++. .+.+... ..+....+--  ---++...++|     |+|||+.    .+
T Consensus        31 ~~illLl~LYllQGiP~GL~~-~iP~lL~a-k~vSyt~~a~fS~ay~P~--sLKllWaPiVDs~y~k~~Grrks----Wv  102 (510)
T KOG3574|consen   31 SSILLLLFLYLLQGIPLGLIG-AIPLLLQA-KGVSYTSQAIFSFAYWPF--SLKLLWAPIVDSVYSKRFGRRKS----WV  102 (510)
T ss_pred             hhHHHHHHHHHHcCCchhHhh-hhHHHhcC-CCcchhhhhhhhhhhhHH--HHHHHHHhhhHHHHHHhhccccc----ee
Confidence            445555555555555554444 78888874 3343222 2222111111  11334555666     8999843    23


Q ss_pred             HHHHHHHHHHH-HHHHhhh----------hhHHHHHHHHHHHHHHHhccCchhhhhhcccCCchhhHHHHHHHHHHHhhc
Q 014628          278 SAATFLGAISC-LTAFCLS----------SLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFG  346 (421)
Q Consensus       278 ~~~~~~~~~~~-~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g  346 (421)
                      +-+..+.+..+ ++....+          +.......+++..+....--...-.+......+++.|-++......... |
T Consensus       103 vp~q~llG~~mllLs~~v~~~~g~ng~~p~v~~lt~~f~LLnflaAtQDIAVDgwALtmLs~e~lgyaST~q~Vg~~~-G  181 (510)
T KOG3574|consen  103 VPCQYLLGLFMLLLSYLVDRGLGGNGGLPNVVALTLLFLLLNFLAATQDIAVDGWALTMLSRENLGYASTCQSVGQTA-G  181 (510)
T ss_pred             eehHHHHHHHHHHHhhCCCcccccCCCCcchHHHHHHHHHHHHHHhhhhhhhhHHHHHhcCHhhcCchhHHHHHHHhh-h
Confidence            33333333322 2222211          1111222333344444433334455566666777666666555333333 5


Q ss_pred             ccCcc
Q 014628          347 DVPSS  351 (421)
Q Consensus       347 ~~~~~  351 (421)
                      .+++.
T Consensus       182 yfL~~  186 (510)
T KOG3574|consen  182 YFLGN  186 (510)
T ss_pred             HHhhc
Confidence            55443

>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]

Probab=89.97  E-value=7.3  Score=37.54  Aligned_cols=166  Identities=11%  Similarity=-0.006  Sum_probs=89.7

Q ss_pred             HHHHHHHHHHHHHhhHHHHHhhCCccchh-HHHhhhhHHHHHHhhhhhHHHhhhccccchhhHHHHHHHHHHHHHHHHHH
Q 014628          214 IAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAF  292 (421)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (421)
                      .+-...+++....+-.|+.+..+.+...+ -.............+.+++++|-+--|.    +.+.++.++...+..++.
T Consensus        47 ~~e~~a~~g~~~nlv~ylt~~~~~~~~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry----~tI~~~s~i~~~G~~~lt  122 (571)
T KOG1237|consen   47 VLERLAFFGLVSNLVTYLTLELHASGGGAANNVNAFGGTQFLLPLLGAFLADSFLGRY----FTINIGSLISLLGLFGLT  122 (571)
T ss_pred             HHHHHhHhcchhHHHHHHHHHhccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHH----HHHHHHHHHHHHHHHHHH
Confidence            44455566666666677777776664322 2223333444566678899999764431    444444444433322221


Q ss_pred             hhh----------------------h---hHHHHHHHHHHHHHHHhccCchhhhhhcccCC----chhh--HHHHHHHHH
Q 014628          293 CLS----------------------S---LYGFLALFTVGELLVFATQAPVNYVCLHSVKP----SLRA--LSMAISTVS  341 (421)
Q Consensus       293 ~~~----------------------~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~--~~~g~~~~~  341 (421)
                      ...                      +   ...+...+.+...+.++.-+...+.-.|-+++    +.+.  .-+......
T Consensus       123 ~~a~~~~l~p~~~~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~  202 (571)
T KOG1237|consen  123 LSAMIPALLPFMCKFKPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKGIPSFFNWFYFS  202 (571)
T ss_pred             HHHHhhhcCCccccCCCCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhCcccchhHHHHH
Confidence            110                      0   01222233333345556667777788887772    2222  444455444


Q ss_pred             HHhhcccCcchhHHHhhhccccchhhhHHHHHHHHHHHHHHHHh
Q 014628          342 IHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFFLAAGIWFVG  385 (421)
Q Consensus       342 ~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~  385 (421)
                      .+. |..++..+..++.|..+ |...+.....+..++.++++..
T Consensus       203 ~~~-g~l~a~t~~vyiq~~~~-w~lgf~i~~~~~~lai~iF~~g  244 (571)
T KOG1237|consen  203 QNG-GALLAQTVLVYIQDNVG-WKLGFGIPTVLNALAILIFLPG  244 (571)
T ss_pred             HHH-HHHHHHHHHHhhhhccc-ceeeccHHHHHHHHHHHHHHcC
Confidence            444 66666666666666644 7777877777766666655543

>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT)

Probab=89.17  E-value=10  Score=35.26  Aligned_cols=33  Identities=6%  Similarity=-0.126  Sum_probs=19.0

Q ss_pred             hHHHHHHHHHHHHHHHhccCchhhhhhcccCCch
Q 014628          297 LYGFLALFTVGELLVFATQAPVNYVCLHSVKPSL  330 (421)
Q Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  330 (421)
                      .+..++..++.+++.+...+....+.. .+|++.
T Consensus       106 f~~~~~~v~~~g~~~~~~q~s~~gla~-~fp~~~  138 (437)
T TIGR00939       106 FVTTMASVVIINSGMALLQGSLFGLAG-VFPSTY  138 (437)
T ss_pred             HHHHHHHHHHHHhhhhhhcccchhhcc-cCCHHH
Confidence            334445555566666666666666554 466654

>PF06912 DUF1275: Protein of unknown function (DUF1275); InterPro: IPR010699 This family consists of several hypothetical bacterial proteins of around 200 residues in length

Probab=85.14  E-value=11  Score=30.93  Aligned_cols=43  Identities=12%  Similarity=0.173  Sum_probs=25.4

Q ss_pred             ccCCCCCchhHHHHHHHHHHHHhhhHHHhHHhhhhcchhHHHH
Q 014628           71 DNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAF  113 (421)
Q Consensus        71 ~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~wr~~f  113 (421)
                      |+..+|++.+.-.......-++..+|..+++.+.+..+.+...
T Consensus       153 ~~~~~~~~~~~~~~~~~~~i~~f~~Ga~~ga~l~~~~~~~al~  195 (209)
T PF06912_consen  153 RYLRGKDRALRRALRYLLIILSFFIGAILGALLYRRLGFWALL  195 (209)
T ss_pred             HHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence            4433444434445555666667777777777777776753333

The function of this family is unknown although a few members are thought to be membrane proteins.

>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=83.50  E-value=4.5  Score=28.33  Aligned_cols=35  Identities=17%  Similarity=0.235  Sum_probs=23.4

Q ss_pred             chhhHHHHHHHHHHHhhcccCcchhHHHhhhccccc
Q 014628          329 SLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNW  364 (421)
Q Consensus       329 ~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~g~~  364 (421)
                      +.++.+.++- ....++++++-....||+.|++-+-
T Consensus        38 s~k~~~~a~k-lssefIsGilVGa~iG~llD~~agT   72 (116)
T COG5336          38 SIKGYAQAFK-LSSEFISGILVGAGIGWLLDKFAGT   72 (116)
T ss_pred             hhhhhhhhHH-HHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            4566777766 4555556665566889999987543

>KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only]

Probab=83.40  E-value=3.6  Score=35.54  Aligned_cols=75  Identities=9%  Similarity=0.005  Sum_probs=61.6

Q ss_pred             HHHHHHHhhhhhhhhHHHHHHHHHHhhhhhhhhccchhhhhhccCCCCCchhHHHHHHHHHHHHhhhHHHhHHhh
Q 014628           29 SVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVV  103 (421)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l  103 (421)
                      +++.+...+..+.++++...+.-+.-|+-.|..+....--+.+-.++++|-.+++....+-++|..++..++-.+
T Consensus       327 l~ff~~~a~~~ftpsi~ivf~lI~~EGLlGGasYVNTf~~i~~e~~pd~rEfamsavs~sDS~Gi~lA~~lalpl  401 (409)
T KOG3880|consen  327 LLFFLLQAWYWFTPSIWIVFALILFEGLLGGASYVNTFHNIHKETEPDVREFAMSAVSISDSIGIFLAGLLALPL  401 (409)
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHhhcCchHHHHHHHHHhhcCCchHHHHhHhhheecchhhHHHHHHHhccc
Confidence            444555556677889999999999999988888888877788888889999999999999999998888777554

>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea

Probab=81.52  E-value=11  Score=34.43  Aligned_cols=19  Identities=26%  Similarity=0.424  Sum_probs=10.9

Q ss_pred             HHHHHHhhhhhHHHhhhcc
Q 014628          250 VCGIVGTISGGFILDQMGA  268 (421)
Q Consensus       250 ~~~~~~~~~~g~l~d~~~~  268 (421)
                      +..++..+..|++..|.+-
T Consensus         6 i~~i~~ii~~G~~~~~~~~   24 (385)
T PF03547_consen    6 ILPIFLIILLGYLLGRFGI   24 (385)
T ss_pred             HHHHHHHHHHHHHHHHhCC
Confidence            3344455566777776643

Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	421
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	2e-12

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 Length = 451

 Score = 67.8 bits (166), Expect = 2e-12
 Identities = 49/374 (13%), Positives = 105/374 (28%), Gaps = 39/374 (10%)

Query: 19  NPFRLIGVGLSVWTFATAGCG----SSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAP 74
           NP   +  GL +        G    ++     + +   L G  +          +     
Sbjct: 90  NPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWS 149

Query: 75  VPQKTAWLSMFYMCIPTGVALGY-VYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVI--K 131
             ++   +S++      G  +   ++   +    +W  A +  A   +  A+ AF +   
Sbjct: 150 QKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRD 209

Query: 132 PLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLS 191
             Q  G  P E  K       +E +E                               +L+
Sbjct: 210 TPQSCGLPPIEEYKNDYPDDYNEKAEQ------------------------------ELT 239

Query: 192 QFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADMMFGGVTI-V 250
                 + +L  K+     +  +    +      W P     + H +     +       
Sbjct: 240 AKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEY 299

Query: 251 CGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELL 310
            GI GT+  G++ D++      A  +        A          +    +    V   L
Sbjct: 300 AGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFL 359

Query: 311 VFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLA 370
           ++     +    L          +   + +  ++ G V +S +VG   D    W    + 
Sbjct: 360 IYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFF-GWDGGFMV 418

Query: 371 LTSIFFLAAGIWFV 384
           +     LA  +  V
Sbjct: 419 MIGGSILAVILLIV 432

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	421
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	100.0
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	100.0
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	100.0
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	100.0
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	100.0
2cfq_A	417	Lactose permease; transport, transport mechanism,	99.96
2xut_A	524	Proton/peptide symporter family protein; transport	99.95
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.54
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.5
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	99.45
2xut_A	524	Proton/peptide symporter family protein; transport	99.4
2cfq_A	417	Lactose permease; transport, transport mechanism,	99.39
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	99.31
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	99.03

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=100.00  E-value=3.2e-37  Score=285.52  Aligned_cols=348  Identities=14%  Similarity=0.102  Sum_probs=264.4

Q ss_pred             ccccchhhHHHHhhhhcCCchHHHHHHHHHHHHHhhhhh----hhhHHHHHHHHHHhhhhhhhhccchhhhhhccCCCCC
Q 014628            2 VGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGS----SFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQ   77 (421)
Q Consensus         2 lg~~i~~~~~g~l~Dr~Grr~~~~~~~~~~~~~~~~~~~----~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~   77 (421)
                      +++.++++++|+++||+|||++++++.++.+++.+++++    ++|++.++++|+++|++.+...+...+++.|++|+++
T Consensus        73 ~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~  152 (451)
T 1pw4_A           73 IAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKE  152 (451)
T ss_dssp             HHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTH
T ss_pred             HHHHHHHHhHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchh
Confidence            467789999999999999999999999999999999999    9999999999999999999999999999999999999


Q ss_pred             chhHHHHHHHHHHHHhhhHHHhHHhhhhcch-hHHHHHHHHHHHHHHHHHHHhcccccccccCCccccchhhhhhccccc
Q 014628           78 KTAWLSMFYMCIPTGVALGYVYGGVVGSHLN-WRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGS  156 (421)
Q Consensus        78 r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~-wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~  156 (421)
                      |++++++.+.+..+|.+++|.+++.+.+..| ||+.|++.+++.++..++.++..||++++...+++.+..         
T Consensus       153 r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------  223 (451)
T 1pw4_A          153 RGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYK---------  223 (451)
T ss_dssp             HHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTC---------
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCChhhhc---------
Confidence            9999999999999999999999999888888 999999999988887777777777654432111110000         


Q ss_pred             ccccCCcccccccchhhhhhhccccchhhhhhhhhhhhhhhHHhhcchhHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhC
Q 014628          157 EASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYH  236 (421)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (421)
                       +    ++ .++    .+.+.+++       ...++  ...+.++++|.++...+..++..........+.|.|+++.++
T Consensus       224 -~----~~-~~~----~~~~~~~~-------~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  284 (451)
T 1pw4_A          224 -N----DY-PDD----YNEKAEQE-------LTAKQ--IFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKH  284 (451)
T ss_dssp             -C----C-------------------------CCTH--HHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSC
T ss_pred             -c----cc-ccc----chhhhhcc-------ccccc--chHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence             0    00 000    00000000       00000  114567789999998888888888888999999999998888


Q ss_pred             Cccchh-HHHhhhhHHHHHHhhhhhHHHhhh--ccccchhhHHHHHHHHHHH-HHHHHHHhh--hhhHHHHHHHHHHHHH
Q 014628          237 MSNADM-MFGGVTIVCGIVGTISGGFILDQM--GATISNAFKLLSAATFLGA-ISCLTAFCL--SSLYGFLALFTVGELL  310 (421)
Q Consensus       237 ~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~~~--~~~~~~~~~~~~~~~~  310 (421)
                      .+.... .+.....++.+++.++.+++.||+  ++|     +.+.....+.. +.++.....  .+.+...+..++.+++
T Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  359 (451)
T 1pw4_A          285 FALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNR-----GATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFL  359 (451)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCH-----HHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-----hhHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHH
Confidence            876544 445667788999999999999999  776     55554444443 333333333  2455555566666777


Q ss_pred             HHhccCchhhhhhcccCCchhhHHHHHHHHHHHhhcccCcchhHHHhhhccccchhhhHHHHHHHHHHHHHHH
Q 014628          311 VFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFFLAAGIWF  383 (421)
Q Consensus       311 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~  383 (421)
                      .+...+....+..+.+|+++|+++.|+.+...+.+|..++|.+.|.+.|..| +...+++.+++.+++.++.+
T Consensus       360 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g-~~~~~~~~~~~~~~~~~~~~  431 (451)
T 1pw4_A          360 IYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFG-WDGGFMVMIGGSILAVILLI  431 (451)
T ss_dssp             HTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSC-SHHHHHHHHHHHHHHHHHHH
T ss_pred             HhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-cHHHHHHHHHHHHHHHHHHH
Confidence            7677777788999999999999999999655554488889999999999876 77777777776666555444

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=100.00  E-value=2.6e-35  Score=271.66  Aligned_cols=319  Identities=16%  Similarity=0.187  Sum_probs=252.8

Q ss_pred             ccccchhhHHHHhhhhcCCchHHHHHHHHHHHHHhhh---hhhhhHHHHHHHHHHhhhhhhhhccchhhhhhccCCCCCc
Q 014628            2 VGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGC---GSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQK   78 (421)
Q Consensus         2 lg~~i~~~~~g~l~Dr~Grr~~~~~~~~~~~~~~~~~---~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r   78 (421)
                      +++.++++++|+++||+|||++++++.++.+++.+++   +++++++.++++|+++|++.+...+...+++.|++|+++|
T Consensus        72 ~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r  151 (438)
T 3o7q_A           72 FGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSG  151 (438)
T ss_dssp             HHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTH
T ss_pred             HHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhH
Confidence            4678899999999999999999999999999999999   8899999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHhhhHHHhHHhhh-hcch-------------------------hHHHHHHHHHHHHHHHHHHHhcc-
Q 014628           79 TAWLSMFYMCIPTGVALGYVYGGVVG-SHLN-------------------------WRYAFWGEAILMLPFAVLAFVIK-  131 (421)
Q Consensus        79 ~~~~~~~~~~~~~G~~~g~~~~~~l~-~~~~-------------------------wr~~f~~~~~~~~~~~~~~~~~~-  131 (421)
                      ++++++.+.+.++|.+++|.+++.+. +..+                         ||+.|++.+++.++..++.++.. 
T Consensus       152 ~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~  231 (438)
T 3o7q_A          152 HFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKF  231 (438)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            99999999999999999999999988 5544                         99999888877766665554432 


Q ss_pred             cccccccCCccccchhhhhhcccccccccCCcccccccchhhhhhhccccchhhhhhhhhhhhhhhHHhhcchhHHHHHH
Q 014628          132 PLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVL  211 (421)
Q Consensus       132 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (421)
                      ||..++.+++++.                                              ++..+++++++++|.++...+
T Consensus       232 p~~~~~~~~~~~~----------------------------------------------~~~~~~~~~~~~~~~~~~~~~  265 (438)
T 3o7q_A          232 PALQSDNHSDAKQ----------------------------------------------GSFSASLSRLARIRHWRWAVL  265 (438)
T ss_dssp             CCCTTTCCCCSST----------------------------------------------TSHHHHHHHHTTCSHHHHHHH
T ss_pred             Ccccccccccccc----------------------------------------------cchhhhHHHHHhChHHHHHHH
Confidence            3322110000000                                              011235677889999999888


Q ss_pred             HHHHHHHHHHHHHHHhhHH-HHHhhCCccchh-HHHhhhhHHHHHHhhhhhHHHhhhccccchhhHHHHHHHHHHHHHHH
Q 014628          212 GYIAYNFVIGAYSYWGPKA-GYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCL  289 (421)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~  289 (421)
                      ..++..........+.|.| +++.++.+.... .+.....++.+++.++.+++.||+++|     +.+..+.++..+..+
T Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~-----~~~~~~~~~~~~~~~  340 (438)
T 3o7q_A          266 AQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPH-----KVLAAYALIAMALCL  340 (438)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHH-----HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcch-----HHHHHHHHHHHHHHH
Confidence            8888888888889999999 888878776544 444667788899999999999999998     677666666666665


Q ss_pred             HHHhhhhhHHHHHHHHHHHHHHHhccCchhhhhhcccCCchhhHHHHHHHHHHHhhcccCcchhHHHhhhccccchhhhH
Q 014628          290 TAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTL  369 (421)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~  369 (421)
                      .....++.+.. ....+.+++.+...+....+..+.+|++ ++.+.++.. ... +|..++|.+.|++.|..|++...+.
T Consensus       341 ~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~-~g~~~~~~~~g~l~~~~g~~~~~~~  416 (438)
T 3o7q_A          341 ISAFAGGHVGL-IALTLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTI-IGGGIVTPVMGFVSDAAGNIPTAEL  416 (438)
T ss_dssp             HHHHCCHHHHH-HHHHHHHHHHTTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTT-HHHHHHHHHHHHHHHHHTSSGGGGH
T ss_pred             HHHHcCCcHHH-HHHHHHHHHHHHHHHHHHHHHHhhcccc-ccchhhHHH-HHH-HHHHHHHHHHHHHHHHhcchHHHHH
Confidence            55555555443 3446666777777788888888988866 888888874 444 5889999999999999876777777


Q ss_pred             HHHHHH
Q 014628          370 ALTSIF  375 (421)
Q Consensus       370 ~~~~~~  375 (421)
                      +.+.+.
T Consensus       417 ~~~~~~  422 (438)
T 3o7q_A          417 IPALCF  422 (438)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            654443

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=100.00  E-value=7.5e-36  Score=279.29  Aligned_cols=378  Identities=14%  Similarity=0.094  Sum_probs=239.2

Q ss_pred             ccccchhhHHHHhhhhcCCchHHHHHHHHHHHHHhhhh------------------hhhhHHHHHHHHHHhhhhhhhhcc
Q 014628            2 VGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCG------------------SSFDFWSIAICRMLVGVGEASFIS   63 (421)
Q Consensus         2 lg~~i~~~~~g~l~Dr~Grr~~~~~~~~~~~~~~~~~~------------------~~~~~~~l~~~r~l~G~~~~~~~~   63 (421)
                      +|.++|++++|+++||+|||+++.++.+++.+++++++                  +++|+++++++|+++|++.|+..+
T Consensus        66 ~G~~iG~~~~G~laDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~  145 (491)
T 4gc0_A           66 IGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASM  145 (491)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence            57889999999999999999999999999999999988                  478999999999999999999999


Q ss_pred             chhhhhhccCCCCCchhHHHHHHHHHHHHhhhHHHhHHhhhh--------cchhHHHHHHHHHHHHHHHHHHHhcccccc
Q 014628           64 LAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGS--------HLNWRYAFWGEAILMLPFAVLAFVIKPLQL  135 (421)
Q Consensus        64 ~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~--------~~~wr~~f~~~~~~~~~~~~~~~~~~p~~~  135 (421)
                      ....+++|+.|+++|++..++.+.+..+|.++++.++..+..        ..+||+.+.+..++.++..+. .+..||++
T Consensus       146 ~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~peSp  224 (491)
T 4gc0_A          146 LSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLML-LYTVPESP  224 (491)
T ss_dssp             HHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHHH-GGGSCCCH
T ss_pred             HHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhhhh-hhcCCCCh
Confidence            999999999999999999999999999999999988877653        246888888887776555544 44458887


Q ss_pred             cccCCccccchhhhhhcccccccccCCcccccccchhhhhhhccccchhhhhhhhhhhhhhhHHhhcchhHHHHHHH-HH
Q 014628          136 KGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLG-YI  214 (421)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  214 (421)
                      ++...+++.++..  +..++....+.       ..++..+..+..       ...++ .......++.+........ .+
T Consensus       225 ~~L~~~~~~~~a~--~~l~~~~~~~~-------~~~~~~~~~~~~-------~~~~~-~~~~~~~~~~~~~~~~~~~~~~  287 (491)
T 4gc0_A          225 RWLMSRGKQEQAE--GILRKIMGNTL-------ATQAVQEIKHSL-------DHGRK-TGGRLLMFGVGVIVIGVMLSIF  287 (491)
T ss_dssp             HHHHHTTCHHHHH--HHHHHHHHHHH-------HHHHHHHHHHHH-------HHHHH-HTTHHHHSCCTHHHHHHHHHHH
T ss_pred             HHHHHcCchhHHH--HhHHHhcCCch-------hHHHHHHHHHHH-------Hhhhh-hhhHHHHhcccHHHHHHHHHHH
Confidence            7643222221111  10000000000       000000000000       00000 0111122333333333332 23


Q ss_pred             HHHHHHHHHHHHhhHHHHHhhCCccchhHHHhhhhHHHHHHhhhhhHHHhhhccccchhhHHHHHHHHHHHHHHHHHHh-
Q 014628          215 AYNFVIGAYSYWGPKAGYNIYHMSNADMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFC-  293 (421)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  293 (421)
                      ......+.+..|.|.+.++....+........+..+..+++.++++++.||+|||     +.+........+.++.... 
T Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr-----~~~~~~~~~~~~~~~~l~~~  362 (491)
T 4gc0_A          288 QQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRK-----PLQIIGALGMAIGMFSLGTA  362 (491)
T ss_dssp             HHHTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSH-----HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhhhhHHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCc-----chhccchHHHHHHHHHHHHH
Confidence            3333455666777776666544443333445666788889999999999999998     5555444444333322211 


Q ss_pred             ---hhhhHHHHHHHHHHHHHHHhccC-chhhhhhcccCCchhhHHHHHHHHHHHhhcccCcchhHHHhhhccc-----cc
Q 014628          294 ---LSSLYGFLALFTVGELLVFATQA-PVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVN-----NW  364 (421)
Q Consensus       294 ---~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~g-----~~  364 (421)
                         ..+.+..++...+...+.+.... ..+.+..|.+|++.|+++.|+.+...+. ++++++.+.+.+.+...     +.
T Consensus       363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~-~~~i~~~~~p~l~~~~~~~~~~~~  441 (491)
T 4gc0_A          363 FYTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWL-ANYFVSWTFPMMDKNSWLVAHFHN  441 (491)
T ss_dssp             HHTTCCHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHH-HHHHHHTHHHHHCHHHHHHHHHTT
T ss_pred             HhcccchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhhhh
Confidence               11222333333333334343333 4467888999999999999999766666 77778878777655321     12


Q ss_pred             hhhhHHHHHHHHHHHHHHHHhhhhcc-ccccccccccccccC
Q 014628          365 RKTTLALTSIFFLAAGIWFVGIFLKS-IDKFNEDGENQISLD  405 (421)
Q Consensus       365 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  405 (421)
                      ...+++++++.+++.++.  +.++|| |+|+.||.|+..+++
T Consensus       442 ~~~~~i~~~~~~~~~i~~--~~~~PETkg~tLeei~~~f~~~  481 (491)
T 4gc0_A          442 GFSYWIYGCMGVLAALFM--WKFVPETKGKTLEELEALWEPE  481 (491)
T ss_dssp             CHHHHHHHHHHHHHHHHH--HHHCCCCTTCCHHHHGGGTC--
T ss_pred             hHHHHHHHHHHHHHHHHH--HheecCCCCCCHHHHHHHhCCC
Confidence            234555555444444332  335676 889998888776543

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=100.00  E-value=7.7e-34  Score=256.22  Aligned_cols=312  Identities=14%  Similarity=0.067  Sum_probs=241.4

Q ss_pred             ccccchhhHHHHhhhhcCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhhhhhhhccchhhhhhccCCCCCchhH
Q 014628            2 VGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAW   81 (421)
Q Consensus         2 lg~~i~~~~~g~l~Dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~   81 (421)
                      +++.++++++|+++||+|||+++..+.++..++.++.+++++++.+++.|+++|++.+...+...+++.|++|+++|+++
T Consensus        46 ~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~  125 (375)
T 2gfp_A           46 LTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHA  125 (375)
T ss_dssp             HHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSH
T ss_pred             HHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHH
Confidence            45678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhhHHHhHHhhhhcchhHHHHHHHHHHHHHHHHHHHhcccccccccCCccccchhhhhhcccccccccC
Q 014628           82 LSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNL  161 (421)
Q Consensus        82 ~~~~~~~~~~G~~~g~~~~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (421)
                      +++.+.+..+|..++|.+++.+.++.+||+.|++.+++.++..+..++..||++++.++  +++                
T Consensus       126 ~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~----------------  187 (375)
T 2gfp_A          126 NSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTFSMARWMPETRPVDAP--RTR----------------  187 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHCCCCCSSCCCSTTTCC--CCC----------------
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHCcccCCCCcc--ccc----------------
Confidence            99999999999999999999999989999999999888777666555555654322100  000                


Q ss_pred             CcccccccchhhhhhhccccchhhhhhhhhhhhhhhHHhhcchhHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhCCccch
Q 014628          162 NDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNAD  241 (421)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (421)
                                                     ..+++++++++|.++...+..++.......+..+.|.|+++..+.++..
T Consensus       188 -------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  236 (375)
T 2gfp_A          188 -------------------------------LLTSYKTLFGNSGFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMT  236 (375)
T ss_dssp             -------------------------------TTTCSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHH
T ss_pred             -------------------------------HHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHH
Confidence                                           0123445677888888888888888888889999999998877776544


Q ss_pred             h-HHHhhhhHHHHHHhhhhhHHHhhhccccchhhHHHHHHH-HHHHHHHHHHHh--hhhhHHHHHHHHHHHHHHHhccCc
Q 014628          242 M-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAAT-FLGAISCLTAFC--LSSLYGFLALFTVGELLVFATQAP  317 (421)
Q Consensus       242 ~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~  317 (421)
                      . .......++.+++.++.+++.||.+++     ....... ............  .++.+...+..++.+++.+...+.
T Consensus       237 ~g~~~~~~~~~~~~~~~~~~~l~~r~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~  311 (375)
T 2gfp_A          237 VSILFILPIPAAFFGAWFAGRPNKRFSTL-----MWQSVICCLLAGLLMWIPDWFGVMNVWTLLVPAALFFFGAGMLFPL  311 (375)
T ss_dssp             HHHHHHTHHHHHHHHHHHHHTTTTHHHHH-----HHHHHHHHHHTSSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHTSST
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHhhHH
Confidence            4 344666677788888888888887663     2222211 111111111111  234555556667778888888899


Q ss_pred             hhhhhhcccCCchhhHHHHHHHHHHHhhcccCcchhHHHhhhccccchhhhHH
Q 014628          318 VNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLA  370 (421)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~  370 (421)
                      ...+..+..| ++|+++.|+.+...+. |..++|.+.|.+.+..+ +...+..
T Consensus       312 ~~~~~~~~~p-~~~g~~~g~~~~~~~~-g~~~~~~~~g~l~~~~~-~~~~~~~  361 (375)
T 2gfp_A          312 ATSGAMEPFP-FLAGTAGALVGGLQNI-GSGVLASLSAMLPQTGQ-GSLGLLM  361 (375)
T ss_dssp             THHHHHTHHH-HHHHHHHHHHHHHHHH-HHHCCSTTCTHHHHHHH-HHHHHHH
T ss_pred             HHHHHHHhCC-cccchHHHHHHHHHHH-HHHHHHHHHHHHhcCCc-ccHHHHH
Confidence            9999999987 8999999999766665 88999999999987543 5454444

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=100.00  E-value=1.1e-32  Score=257.82  Aligned_cols=376  Identities=11%  Similarity=-0.027  Sum_probs=239.3

Q ss_pred             ccccchhhHHHHhhhh-cCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhhhhhhhccchhhhhhccCCCCC--c
Q 014628            2 VGLLVASPIFASLAKS-HNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQ--K   78 (421)
Q Consensus         2 lg~~i~~~~~g~l~Dr-~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~--r   78 (421)
                      ++..++++++|+++|| +|||+++..+.++.+++.+++++++|++.++++|+++|++.+...+...+++.|++|+++  |
T Consensus        65 ~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r  144 (491)
T 4aps_A           65 SMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRR  144 (491)
T ss_dssp             HHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHH
T ss_pred             HHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccc
Confidence            4678899999999999 899999999999999999999999999999999999999999999999999999999988  7


Q ss_pred             hhHHHHHHHHHHHHhhhHHHhHHhhhhcchhHHHHHHHHHHHHHHHHHHHhcccccccccCCcccc-chh-hhhhccccc
Q 014628           79 TAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESG-KAQ-VVASVSEGS  156 (421)
Q Consensus        79 ~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~-~~~-~~~~~~~~~  156 (421)
                      +.++++++.+.++|..++|.+++.+.++.|||+.|++.++..++..++.++..|+..++..++++. ... +.++..+..
T Consensus       145 ~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  224 (491)
T 4aps_A          145 DAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVKPLLVKV  224 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCSCCSCCCSHHHHHHHHHHC
T ss_pred             eeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhCcccccccccCCCCccccchhHHHHHHH
Confidence            778888999999999999999999999999999999988777666655554444432221111110 000 000000000


Q ss_pred             -------------ccccCCcccccccchhhhhhhccccchhhhhhhhhhhhhhhHHhhcchhHHHHHHHHHHHHHHHHHH
Q 014628          157 -------------EASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAY  223 (421)
Q Consensus       157 -------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  223 (421)
                                   ....+..+.++.. ...... ............+++.....+...+....+...+........+...
T Consensus       225 g~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  302 (491)
T 4aps_A          225 SLAVAGFIAIIVVMNLVGWNSLPAYI-NLLTIV-AIAIPVFYFAWMISSVKVTSTEHLRVVSYIPLFIAAVLFWAIEEQG  302 (491)
T ss_dssp             CCCCHHHHHHHHHHHHHSSCCTTHHH-HHHHHH-HHHHHHHHHHHHC------------CTTHHHHHHHHHHHHHHHGGG
T ss_pred             HHHHHHHHHHHHHHHhccCcccccch-hhhhHH-HHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence                         0000000000000 000000 0000000000000000001111112223344444444455555566


Q ss_pred             HHHhhHHHHHhhCCcc-chhHHHhhhhHHHHHHhhhhhHHHhhhccccchhhHHHHHHHHHHHHHHHHHHhh--------
Q 014628          224 SYWGPKAGYNIYHMSN-ADMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCL--------  294 (421)
Q Consensus       224 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------  294 (421)
                      ..++|.|..+..+.+. ..........+..+++.++.+++.||++||+......+..+..+..+.+......        
T Consensus       303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  382 (491)
T 4aps_A          303 SVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYGTSG  382 (491)
T ss_dssp             GTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHHHHCCCCT
T ss_pred             cHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence            6778888888776663 2334446667788888999999999999885433233334444444443333222        


Q ss_pred             -hhhHHHHHHHHHHHHHHHhccCchhhhhhcccCCchhhHHHHHHHHHHHhhcccCcchhHHHhhhccccchhhhHHHHH
Q 014628          295 -SSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTS  373 (421)
Q Consensus       295 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~  373 (421)
                       .+.+......++.+++.+...+....+..+.+|++.|+++.|+.+...+. |..++|.+.+.+.+.  ++...+...+.
T Consensus       383 ~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~-g~~i~~~~~~~~~~~--~~~~~~~~~~~  459 (491)
T 4aps_A          383 KVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSV-GSALNAQLVTLYNAK--SEVAYFSYFGL  459 (491)
T ss_dssp             TCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHH-HHHHHHHHGGGGGGS--STTHHHHHTHH
T ss_pred             CccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcc--cHHHHHHHHHH
Confidence             14455566667777777787888899999999999999999999766665 889999998888774  34456666555


Q ss_pred             HHHHHHHHH
Q 014628          374 IFFLAAGIW  382 (421)
Q Consensus       374 ~~~~~~~~~  382 (421)
                      +.+++.++.
T Consensus       460 ~~~~~~~~~  468 (491)
T 4aps_A          460 GSVVLGIVL  468 (491)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            554444443

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=99.96  E-value=2.9e-29  Score=229.05  Aligned_cols=331  Identities=13%  Similarity=0.025  Sum_probs=209.1

Q ss_pred             ccccchhhHHHHhhhhcCCchHHHHHHHHHHHHH---hhhhhhhhHH-HHHHHHHHhhhhhhhhccchhhhhhccCCC--
Q 014628            2 VGLLVASPIFASLAKSHNPFRLIGVGLSVWTFAT---AGCGSSFDFW-SIAICRMLVGVGEASFISLAAPFIDDNAPV--   75 (421)
Q Consensus         2 lg~~i~~~~~g~l~Dr~Grr~~~~~~~~~~~~~~---~~~~~~~~~~-~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~--   75 (421)
                      +++.++++++|+++||+|||++++++..+++++.   ....+++... .+...+++.|++.+...+.....+.++.++  
T Consensus        54 ~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  133 (417)
T 2cfq_A           54 LFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVS  133 (417)
T ss_dssp             HHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHHHHHHTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhh
Confidence            4677899999999999999999999888775532   2123333221 244567777776666555555555555543  


Q ss_pred             CCchhHHHHHHHHHHHHhhhHHHhHHhhhhcchhHHHHHHHHHHHHHHHHHHHhcccccccccCCccccchhhhhhcccc
Q 014628           76 PQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEG  155 (421)
Q Consensus        76 ~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~  155 (421)
                      ++++..++......++|..++|.+++++.+ .+||+.|++.+++.++..+..++..||+++.   .++++ .        
T Consensus       134 ~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~-~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~-~--------  200 (417)
T 2cfq_A          134 RRSNFEFGRARMFGCVGWALGASIVGIMFT-INNQFVFWLGSGCALILAVLLFFAKTDAPSS---ATVAN-A--------  200 (417)
T ss_dssp             HHHTCCHHHHSSSTTTHHHHHHHHHHHHHH-HCSHHHHTTTTTTTTTHHHHSCSSCCCCSCS---SCSSS-S--------
T ss_pred             hhcccchHHHHHHHHHHHHHHHHHHHHHHH-hchhHHHHHHHHHHHHHHHHHHHcCcccccc---ccccc-c--------
Confidence            346777888888899999999999999887 4899999988776544444333332332110   00000 0        


Q ss_pred             cccccCCcccccccchhhhhhhccccchhhhhhhhhhhhhhhHHhhcchhHHHHHHHHHHHHHHHHHHHHHhhHHHHHhh
Q 014628          156 SEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIY  235 (421)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (421)
                             ++  +        +.++.            ..++.++++++|.++...+..+.....+..+..+.|.|+.+.+
T Consensus       201 -------~~--~--------~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (417)
T 2cfq_A          201 -------VG--A--------NHSAF------------SLKLALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSFF  251 (417)
T ss_dssp             -------SS--S--------CCCCC------------CHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred             -------cc--c--------ccccc------------cHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                   00  0        00000            0123456677888877666555555555566667888887655


Q ss_pred             CCc---cchh-HHHhhhhHHHHHHhhhhhHHHhhhccccchhhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Q 014628          236 HMS---NADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLV  311 (421)
Q Consensus       236 ~~~---~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  311 (421)
                      +..   .... ....+..++.+++.++.++++||++||     +.+..+..+..+..+.....++.+...+...+.+++.
T Consensus       252 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~-----~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  326 (417)
T 2cfq_A          252 ATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGK-----NALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEV  326 (417)
T ss_dssp             SSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH-----HHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHH
T ss_pred             hccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHH-----HHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence            422   1111 233455567788899999999999998     6665555555444444433444444444444444444


Q ss_pred             HhccCchhhhhhcccCCchhhHHHHHH-HHHHHhhcccCcchhHHHhhhccccchhhhHHHHHHHHHHHHH
Q 014628          312 FATQAPVNYVCLHSVKPSLRALSMAIS-TVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFFLAAGI  381 (421)
Q Consensus       312 ~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~  381 (421)
                      ....+....+..|..|++.|+++.++. +...+. |+.++|.+.|++.|..| +...|.+.+++.+++.++
T Consensus       327 ~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~l-g~~~gp~l~G~l~~~~g-~~~~f~~~~~~~l~~~~~  395 (417)
T 2cfq_A          327 PFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQL-AMIFMSVLAGNMYESIG-FQGAYLVLGLVALGFTLI  395 (417)
T ss_dssp             HHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHH-HHHHHTHHHHTHHHHSH-HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhH-HHHHhhhhHHHHHHhcC-cHHHHHHHHHHHHHHHHH
Confidence            444455677889999999999999984 444444 88899999999998765 666676666665555443

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=99.95  E-value=3.3e-27  Score=222.46  Aligned_cols=131  Identities=15%  Similarity=0.129  Sum_probs=117.6

Q ss_pred             ccccchhhHHHHhhhhc-CCchHHHHHHHHHHHHHhhhhhhh-hHHHHHHHHHHhhhhhhhhccchhhhhhccCCCCCch
Q 014628            2 VGLLVASPIFASLAKSH-NPFRLIGVGLSVWTFATAGCGSSF-DFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKT   79 (421)
Q Consensus         2 lg~~i~~~~~g~l~Dr~-Grr~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~   79 (421)
                      +++.++++++|+++||+ |||+++.++.++.+++.+++++++ +++.+++.|++.|++.+...+...+++.|++|+++|+
T Consensus        65 ~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~  144 (524)
T 2xut_A           65 IGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKS  144 (524)
T ss_dssp             HHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTT
T ss_pred             HHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchH
Confidence            45678899999999999 999999999999999999999999 9999999999999999999999999999999999998


Q ss_pred             hHHHH---HHHHHHHHhhhHHHhHHhhhhcchhHHHHHHHHHHHHHHHHHHHhccc
Q 014628           80 AWLSM---FYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKP  132 (421)
Q Consensus        80 ~~~~~---~~~~~~~G~~~g~~~~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p  132 (421)
                      ++.+.   ++.+.++|.+++|.+++.+.+..|||+.|++.+++.++..++.++..|
T Consensus       145 ~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~  200 (524)
T 2xut_A          145 LAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFWLGRK  200 (524)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHHSSSS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            76666   999999999999999999999889999999998877666555544333

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.54  E-value=2.5e-13  Score=125.12  Aligned_cols=171  Identities=16%  Similarity=0.094  Sum_probs=132.2

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhCCccchh-HHHhhhhHHHHHHhhhhhHHHhhhccccchhhHHHHHHH
Q 014628          203 EKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAAT  281 (421)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~  281 (421)
                      ++.+....+..+........+...+|.+.++.  .+..+. .+.+...++..++.++.|+++||+|||     +.+..+.
T Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r-----~~l~~~~   99 (451)
T 1pw4_A           27 WQIFLGIFFGYAAYYLVRKNFALAMPYLVEQG--FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPR-----VFLPAGL   99 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHTSHHHHHHHTTSST--TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHH-----HHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCch-----HHHHHHH
Confidence            34455555555566666666677788777665  554344 455778889999999999999999998     7777777


Q ss_pred             HHHHHHHHHHHh----hhhhHHHHHHHHHHHHHHHhccCchhhhhhcccCCchhhHHHHHHHHHHHhhcccCcchhHHHh
Q 014628          282 FLGAISCLTAFC----LSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVL  357 (421)
Q Consensus       282 ~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l  357 (421)
                      ++..+..++...    .++.+.+++..++.+++.+...+....++.|.+|+++|++++++.+..... |.+++|.+.+++
T Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-g~~~g~~~~~~l  178 (451)
T 1pw4_A          100 ILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNV-GGGIPPLLFLLG  178 (451)
T ss_dssp             HHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHH-HHTSHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence            777777777666    677777888888889998888899999999999999999999999766665 999999999998


Q ss_pred             hhccccchhhhHHHHHHHHHHHHH
Q 014628          358 QDHVNNWRKTTLALTSIFFLAAGI  381 (421)
Q Consensus       358 ~~~~g~~~~~~~~~~~~~~~~~~~  381 (421)
                      .+..++|+..+++.+.+.++..++
T Consensus       179 ~~~~g~w~~~f~~~~~~~~~~~~~  202 (451)
T 1pw4_A          179 MAWFNDWHAALYMPAFCAILVALF  202 (451)
T ss_dssp             HHHTCCSTTCTHHHHHHHHHHHHH
T ss_pred             HHHhccHHHHHHHHHHHHHHHHHH
Confidence            877655888888777665554443

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.50  E-value=5.5e-13  Score=124.30  Aligned_cols=172  Identities=11%  Similarity=0.039  Sum_probs=138.0

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhHHHHHh-----hCCccchh-HHHhhhhHHHHHHhhhhhHHHhh-hccccchhhHH
Q 014628          204 KVYVVNVLGYIAYNFVIGAYSYWGPKAGYNI-----YHMSNADM-MFGGVTIVCGIVGTISGGFILDQ-MGATISNAFKL  276 (421)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~-~~~~~~~~~~~  276 (421)
                      +.++...+..++..+.++....+++.|+.+.     ++.+.... ...+...++..++.++.|+++|| +|||     +.
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r-----~~   87 (491)
T 4aps_A           13 LGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGAR-----PA   87 (491)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHH-----HH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccch-----HH
Confidence            4566666667777788888888999999887     78876555 44577788999999999999999 8998     78


Q ss_pred             HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhccCchhhhhhcccCCch--hhHHHHHHHHHHHhhcccCcchhH
Q 014628          277 LSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSL--RALSMAISTVSIHIFGDVPSSPLV  354 (421)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~g~~~~~~~~~g~~~~~~~~  354 (421)
                      +..+.++..+..+.....++.+..++..++.+++.+...+....++.|.+|+++  |+.+.++.+...+. |..++|.+.
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~-g~~~~~~~~  166 (491)
T 4aps_A           88 VFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINL-GAFIAPLIV  166 (491)
T ss_dssp             HHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHH-HHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHH-HHHHHHHHH
Confidence            888877777777777777788888888888888888888889999999999987  77788888666565 889999999


Q ss_pred             HHhhhccccchhhhHHHHHHHHHHHHHH
Q 014628          355 GVLQDHVNNWRKTTLALTSIFFLAAGIW  382 (421)
Q Consensus       355 g~l~~~~g~~~~~~~~~~~~~~~~~~~~  382 (421)
                      +.+.+..| |+..+++.+...+++.+..
T Consensus       167 ~~l~~~~g-~~~~f~~~~~~~~~~~~~~  193 (491)
T 4aps_A          167 GAAQEAAG-YHVAFSLAAIGMFIGLLVY  193 (491)
T ss_dssp             HHHHHHSC-HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhhhh-HHHHHHHHHHHHHHHHHHH
Confidence            99998766 7788877666555544443

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=99.45  E-value=2.1e-12  Score=118.43  Aligned_cols=150  Identities=9%  Similarity=0.042  Sum_probs=116.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHHHHhhCCccchh-HHHhhhhHHHHHHhhhhhHHHhhhccccchhhHHHHHHHHHHH
Q 014628          207 VVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGA  285 (421)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~  285 (421)
                      ....+..+.............|.+. +.++.+..+. .+.+...++..++.++.|+++||+|||     +.+..+.++..
T Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r-----~~l~~~~~~~~  102 (438)
T 3o7q_A           29 ALLCSLFFLWAVANNLNDILLPQFQ-QAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYK-----AGIITGLFLYA  102 (438)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH-HHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHH-----HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcch-----HHHHHHHHHHH
Confidence            3334444555555566666777754 4467776554 445777888999999999999999999     77777777776


Q ss_pred             HHHHHH---HhhhhhHHHHHHHHHHHHHHHhccCchhhhhhcccCCchhhHHHHHHHHHHHhhcccCcchhHHHhh-hcc
Q 014628          286 ISCLTA---FCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQ-DHV  361 (421)
Q Consensus       286 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~-~~~  361 (421)
                      +..++.   ...++.+.+++..++.+++.+...+....++.+.+|+++|+++.++.+..... |..++|.+.+.+. +..
T Consensus       103 ~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~-g~~~g~~~~~~l~~~~~  181 (438)
T 3o7q_A          103 LGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSF-GAIIAVVFGQSLILSNV  181 (438)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHH-HHHHHHHHTTHHHHTSS
T ss_pred             HHHHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHH-HHHHHHHHHHHHHhccc
Confidence            666665   55677888888888899999999889999999999999999999999766665 9999999999998 554


Q ss_pred             cc
Q 014628          362 NN  363 (421)
Q Consensus       362 g~  363 (421)
                      +.
T Consensus       182 ~~  183 (438)
T 3o7q_A          182 PH  183 (438)
T ss_dssp             CC
T ss_pred             cc
Confidence            43

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=99.40  E-value=5.4e-12  Score=118.60  Aligned_cols=172  Identities=12%  Similarity=0.008  Sum_probs=131.4

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhC------Cccchh-HHHhhhhHHHHHHhhhhhHHHhhh-ccccchhh
Q 014628          203 EKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYH------MSNADM-MFGGVTIVCGIVGTISGGFILDQM-GATISNAF  274 (421)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~-~~~~~~~~  274 (421)
                      ++.++...+..++....++....++|.|+.+..+      .+.... ...+...++..++.++.|+++||+ |||     
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r-----   85 (524)
T 2xut_A           11 PRQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKY-----   85 (524)
T ss_dssp             --CCTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSH-----
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcch-----
Confidence            3556666677777788888888999999988777      665554 445777888899999999999999 998     


Q ss_pred             HHHHHHHHHHHHHHHHHHhhh-hhHHHHHHHHHHHHHHHhccCchhhhhhcccCCchhhHHHHH---HHHHHHhhcccCc
Q 014628          275 KLLSAATFLGAISCLTAFCLS-SLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAI---STVSIHIFGDVPS  350 (421)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~---~~~~~~~~g~~~~  350 (421)
                      +.+..+.++..+..++....+ +.+.+++..++.+++.+...+....++.+.+|+++|+++.+.   .+...+. |..++
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~-g~~~g  164 (524)
T 2xut_A           86 NTILWLSLIYCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINF-GSFFA  164 (524)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHH-HHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHH-HHHHH
Confidence            777777776666666666666 777777777888888888888899999999999999876666   6555555 88899


Q ss_pred             chhHHHhhhccccchhhhHHHHHHHHHHHHH
Q 014628          351 SPLVGVLQDHVNNWRKTTLALTSIFFLAAGI  381 (421)
Q Consensus       351 ~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~  381 (421)
                      |.+.+.+.+..+ |+..+.+.+.+.++..+.
T Consensus       165 ~~~~~~l~~~~g-~~~~f~~~~~~~~~~~~~  194 (524)
T 2xut_A          165 SLSMPLLLKNFG-AAVAFGIPGVLMFVATVF  194 (524)
T ss_dssp             HHTSTHHHHTSC-HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcccc-HHHHHHHHHHHHHHHHHH
Confidence            999999988755 777777666654444433

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=99.39  E-value=5.5e-13  Score=121.40  Aligned_cols=130  Identities=8%  Similarity=0.033  Sum_probs=112.6

Q ss_pred             ccchhhHHHHhhhhcCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhhhhhhhccchhhhhhccCCCCCchhHHH
Q 014628            4 LLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLS   83 (421)
Q Consensus         4 ~~i~~~~~g~l~Dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~   83 (421)
                      .+++.++.|+++||+|||+++..+.++.+++.++.++.++.+.+++..++.+++.+...+....++.|.+|++.|+++.+
T Consensus       272 ~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g  351 (417)
T 2cfq_A          272 NASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYL  351 (417)
T ss_dssp             HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
Confidence            45678999999999999999999998888888888888888888888888888877777777889999999999999999


Q ss_pred             H-HHHHHHHHhhhHHHhHHhhhhcchhHHHHHHHHHHHHHHHHHHHhcccc
Q 014628           84 M-FYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPL  133 (421)
Q Consensus        84 ~-~~~~~~~G~~~g~~~~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p~  133 (421)
                      . ++....+|..++|.+++.+.+..|++..|.+.+++.++..++.++..||
T Consensus       352 ~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~~  402 (417)
T 2cfq_A          352 VCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSG  402 (417)
T ss_dssp             HHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSCC
T ss_pred             HHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhcC
Confidence            8 5888889999999999999998899999999988877777766655554

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=99.31  E-value=5.7e-12  Score=113.04  Aligned_cols=159  Identities=14%  Similarity=0.079  Sum_probs=119.8

Q ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHhhCCccchh-HHHhhhhHHHHHHhhhhhHHHhhhccccchhhHHHHHHHHHHHHHH
Q 014628          210 VLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISC  288 (421)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~  288 (421)
                      .+..++.......+....|.+.++ .+.++.+. ...+...++..++.+..|+++||+|||     +.+..+.....+..
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r-----~~~~~~~~~~~~~~   79 (375)
T 2gfp_A            6 VLLVAVGQMAQTIYIPAIADMARD-LNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRR-----PVILVGMSIFMLAT   79 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTT-SSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCC-----CCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhhhHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc-----hhHHHHHHHHHHHH
Confidence            344445555555666667766544 66665444 445777888999999999999999998     66666666666666


Q ss_pred             HHHHhhhhhHHHHHHHHHHHHHHHhccCchhhhhhcccCCchhhHHHHHHHHHHHhhcccCcchhHHHhhhccccchhhh
Q 014628          289 LTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTT  368 (421)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~  368 (421)
                      +.....++.+...+..++.+++.+...+....++.|..|+++|++++++.+..... |..++|.+.+++.+..+ |+..+
T Consensus        80 ~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~l~~~~~-~~~~~  157 (375)
T 2gfp_A           80 LVAVTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILV-SPLLAPLIGGLLDTMWN-WRACY  157 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHH-HHHHHHHHHHHSSCHHH-HHHHH
T ss_pred             HHHHHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHH-HHHhhHHHHHHHHHhcc-HHHHH
Confidence            66666677777777888888888888888899999999999999999999766665 99999999999988755 66666


Q ss_pred             HHHHHHHH
Q 014628          369 LALTSIFF  376 (421)
Q Consensus       369 ~~~~~~~~  376 (421)
                      .+.+...+
T Consensus       158 ~~~~~~~~  165 (375)
T 2gfp_A          158 LFLLVLCA  165 (375)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            65555443

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=99.03  E-value=1.9e-09  Score=100.25  Aligned_cols=132  Identities=10%  Similarity=0.036  Sum_probs=97.4

Q ss_pred             ccchhhHHHHhhhhcCCchHHHHHHHHHHHHHhhhhhhh-----hHHHHHHHHHHhhhhhhhhccchhhhhhccCCCCCc
Q 014628            4 LLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSF-----DFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQK   78 (421)
Q Consensus         4 ~~i~~~~~g~l~Dr~Grr~~~~~~~~~~~~~~~~~~~~~-----~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r   78 (421)
                      ..++.++.+++.||+|||+.++.+.....++.+..+...     +...+...-+..+.......+....+.+|.+|.+.|
T Consensus       325 ~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R  404 (491)
T 4gc0_A          325 NLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIR  404 (491)
T ss_dssp             HHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTH
T ss_pred             HHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHH
Confidence            456788999999999999999998888877776654331     222222222222222223446677899999999999


Q ss_pred             hhHHHHHHHHHHHHhhhHHHhHHhhhh------cchhHHHHHHHHHHHHHHHHHHHhcccccc
Q 014628           79 TAWLSMFYMCIPTGVALGYVYGGVVGS------HLNWRYAFWGEAILMLPFAVLAFVIKPLQL  135 (421)
Q Consensus        79 ~~~~~~~~~~~~~G~~~g~~~~~~l~~------~~~wr~~f~~~~~~~~~~~~~~~~~~p~~~  135 (421)
                      ++++++......+|..+++.+...+.+      ..++.+.|++.++++++..+..+++.||+.
T Consensus       405 ~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PETk  467 (491)
T 4gc0_A          405 GKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETK  467 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCCT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecCCC
Confidence            999999999999999988887766543      345667889999988888888888889864

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	421
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	100.0
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.94
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	99.52
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.41

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=2.1e-36  Score=277.37  Aligned_cols=351  Identities=13%  Similarity=0.079  Sum_probs=255.6

Q ss_pred             ccccchhhHHHHhhhhcCCchHHHHHHHHHHHHHhhhhhhh----hHHHHHHHHHHhhhhhhhhccchhhhhhccCCCCC
Q 014628            2 VGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSF----DFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQ   77 (421)
Q Consensus         2 lg~~i~~~~~g~l~Dr~Grr~~~~~~~~~~~~~~~~~~~~~----~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~   77 (421)
                      ++++++++++|+++||+|||+++..+.++.+++.+++++++    +++.+++.|++.|++.+...+...+++.|++|+++
T Consensus        70 ~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~  149 (447)
T d1pw4a_          70 IAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKE  149 (447)
T ss_dssp             HHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTH
T ss_pred             HHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhc
Confidence            56789999999999999999999999999999999988764    67889999999999999999999999999999999


Q ss_pred             chhHHHHHHHHHHHHhhhHHHhHHhhhhc-chhHHHHHHHHHHHHHHHHHHHhcccccccccCCccccchhhhhhccccc
Q 014628           78 KTAWLSMFYMCIPTGVALGYVYGGVVGSH-LNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGS  156 (421)
Q Consensus        78 r~~~~~~~~~~~~~G~~~g~~~~~~l~~~-~~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~  156 (421)
                      |++++++.+.+..+|..+++.+++.+.+. .+||+.|++.+++.++..++.++..++.++....++..+..         
T Consensus       150 r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------  220 (447)
T d1pw4a_         150 RGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYK---------  220 (447)
T ss_dssp             HHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTC---------
T ss_pred             ccccccccccccchhhhhhhhhhhhHhhhhhcccccchhhhhhHHHHHHHHHHhcccchhhcccchhhhhh---------
Confidence            99999999999999999999998877654 47999999999988888887777766543322111111000         


Q ss_pred             ccccCCcccccccchhhhhhhccccchhhhhhhhhhhhhhhHHhhcchhHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhC
Q 014628          157 EASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYH  236 (421)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (421)
                                ++..++..++.+++         ........+..++++.++......++.....+....+.|.|+.+..+
T Consensus       221 ----------~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  281 (447)
T d1pw4a_         221 ----------NDYPDDYNEKAEQE---------LTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKH  281 (447)
T ss_dssp             ----------CC----------------------CCTHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSC
T ss_pred             ----------hhcccchhhccccc---------cchhhHHHHHHHcCchHHHHHHHhhhhhhhhhcchhhhhhhcccccc
Confidence                      00000000000000         00011235567788999988888888888888999999999999888


Q ss_pred             Cccchh-HHHhhhhHHHHHHhhhhhHHHhhhccccchhhHHHHHHHHHHHHHHHHHH--hhhhhHHHHHHHHHHHHHHHh
Q 014628          237 MSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAF--CLSSLYGFLALFTVGELLVFA  313 (421)
Q Consensus       237 ~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~  313 (421)
                      .+.... ....+..+..+++.++.+++.||++++...  ........+.........  ...+.+...+..++.+++...
T Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  359 (447)
T d1pw4a_         282 FALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRG--ATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYG  359 (447)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHH--HHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTH
T ss_pred             cccchhhhhhhcchhhhhhhhhhhhhhhhhccccccc--cccchhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHH
Confidence            886554 444667788899999999999999987432  111111111111111111  123455555566666666666


Q ss_pred             ccCchhhhhhcccCCchhhHHHHHHHHHHHhhcccCcchhHHHhhhccccchhhhHHHHHHHHHHHHHHH
Q 014628          314 TQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFFLAAGIWF  383 (421)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~  383 (421)
                      ..+....+..+.+|++.|+++.|+.+...+..|.+++|.+.|++.|..| +...+.+...+.+++.++.+
T Consensus       360 ~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~g~~~~~~~~g~~~~~~g-~~~~~~~~~~~~~~~~~~~~  428 (447)
T d1pw4a_         360 PVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFG-WDGGFMVMIGGSILAVILLI  428 (447)
T ss_dssp             HHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSC-SHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-hHHHHHHHHHHHHHHHHHHH
Confidence            6777788889999999999999998777776567778999999999877 65667666665555554443

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.94  E-value=3.8e-26  Score=206.07  Aligned_cols=334  Identities=13%  Similarity=0.008  Sum_probs=219.1

Q ss_pred             ccccchhhHHHHhhhhcCCchHHHHHHHHHHHHHhhhhhhhhHHHH----HHHHHHhhhhhhhhccchhhhhhccCCC--
Q 014628            2 VGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSI----AICRMLVGVGEASFISLAAPFIDDNAPV--   75 (421)
Q Consensus         2 lg~~i~~~~~g~l~Dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l----~~~r~l~G~~~~~~~~~~~~~i~~~~~~--   75 (421)
                      +++.++++++|+++||+||||+++++..+..++..+..+..+....    ++.+.+.+.+.+...........+..++  
T Consensus        54 l~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (417)
T d1pv7a_          54 LFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVS  133 (417)
T ss_dssp             HHHHHTHHHHHHHHHHHTTCTHHHHHHHHHHHTHHHHHHHTHHHHHHTTCHHHHHHTTTTGGGGGTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcccccccchhhcccccccchh
Confidence            4677899999999999999999999999999998888887765544    4455555555555555554444444332  


Q ss_pred             CCchhHHHHHHHHHHHHhhhHHHhHHhhhhcchhHHHHHHHHHHHHHHHHHHHhcccccccccCCccccchhhhhhcccc
Q 014628           76 PQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEG  155 (421)
Q Consensus        76 ~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~  155 (421)
                      +++.+..+........+..+++.+++.+.+. +|+..+........+..++.++..|+.+...+++++.+..        
T Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------  204 (417)
T d1pv7a_         134 RRSNFEFGRARMFGCVGWALGASIVGIMFTI-NNQFVFWLGSGCALILAVLLFFAKTDAPSSATVANAVGAN--------  204 (417)
T ss_dssp             HHHSCCHHHHHHHHHHHHHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHSSCCCSCSSSCSSHHHHSC--------
T ss_pred             hhhHHHHHHHhhhhccccccccccccccccc-cccccccchhhHHHHHHHHHHHHhcccccchhhhhhhhhh--------
Confidence            2355677788888889999999999988775 5566666666666666666666655543322111110000        


Q ss_pred             cccccCCcccccccchhhhhhhccccchhhhhhhhhhhhhhhHHhhcchhHHHHHHHHHHHHHHHHHHHHHhhHHHHHhh
Q 014628          156 SEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIY  235 (421)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (421)
                                            .+.           ......+...+++..+....................+.+.....
T Consensus       205 ----------------------~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (417)
T d1pv7a_         205 ----------------------HSA-----------FSLKLALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSFF  251 (417)
T ss_dssp             ----------------------CCC-----------CCHHHHHHHTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSS
T ss_pred             ----------------------ccc-----------ccccccccccccccccchhhhhHHHHHHHHhhhccccccccccc
Confidence                                  000           00011222233333333333333333333333333333322222


Q ss_pred             CC---ccch-hHHHhhhhHHHHHHhhhhhHHHhhhccccchhhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Q 014628          236 HM---SNAD-MMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLV  311 (421)
Q Consensus       236 ~~---~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  311 (421)
                      ..   +... ........++..++..+.+++.||.+++     +.+..+..+..+..+.....++.+...+...+.+++.
T Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~  326 (417)
T d1pv7a_         252 ATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGK-----NALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEV  326 (417)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHH-----HHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHH
T ss_pred             cccccchhhhcccccccccccccchhhhhhhhcccccc-----cchhhhHHHHHHhhhccccccccchhhHHHHHHHHHH
Confidence            11   1111 2333555677788899999999999998     7777777777777777777778888888888888888


Q ss_pred             HhccCchhhhhhcccCCchhhHHHHHHHHHHHhhcccCcchhHHHhhhccccchhhhHHHHHHHHHHHHHHH
Q 014628          312 FATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFFLAAGIWF  383 (421)
Q Consensus       312 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~  383 (421)
                      +...+....+..+.+|++.|+++.++.....+.+|..++|.+.|++.|..| +...+++.+++.++..++.+
T Consensus       327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g-~~~~~~~~~~~~~~~~~~~~  397 (417)
T d1pv7a_         327 PFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIG-FQGAYLVLGLVALGFTLISV  397 (417)
T ss_dssp             HHHHHHHHHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHHHH
Confidence            888888999999999999999999986445554588899999999999887 66777777666555554433

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.52  E-value=2.5e-13  Score=122.68  Aligned_cols=153  Identities=15%  Similarity=0.067  Sum_probs=113.7

Q ss_pred             HHHHhhHHHHHhhCCccchh-HHHhhhhHHHHHHhhhhhHHHhhhccccchhhHHHHHHHHHHHHHHHHHHhh----hhh
Q 014628          223 YSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCL----SSL  297 (421)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~  297 (421)
                      +....| ++++ .+.+..+. ...+...++..++.++.|+++||+|||     +.+..+.++..+..++....    .+.
T Consensus        44 ~~~~~p-~~~~-~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r-----~~~~~~~~~~~~~~~~~~~~~~~~~~~  116 (447)
T d1pw4a_          44 FALAMP-YLVE-QGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPR-----VFLPAGLILAAAVMLFMGFVPWATSSI  116 (447)
T ss_dssp             HHHHHH-HTTS-STTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHH-----HHHHHHHHHHHHHHHHHHHCHHHHSSS
T ss_pred             HHHHHH-HHHH-hCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCch-----HHHHHHHHHHHHHHhhccccchhhhhH
Confidence            444445 3444 56665555 445778889999999999999999999     77776666665555544332    345


Q ss_pred             HHHHHHHHHHHHHHHhccCchhhhhhcccCCchhhHHHHHHHHHHHhhcccCcchhHHHhhhccccchhhhHHHHHHHHH
Q 014628          298 YGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFFL  377 (421)
Q Consensus       298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~  377 (421)
                      +..++..++.+++.+...+....++.+.+|+++|++++++.+..... |..++|.+.+.+.+..++|+..++..+.+.++
T Consensus       117 ~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-g~~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~  195 (447)
T d1pw4a_         117 AVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNV-GGGIPPLLFLLGMAWFNDWHAALYMPAFCAIL  195 (447)
T ss_dssp             SHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHH-HHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcccccccccccccch-hhhhhhhhhhhHhhhhhcccccchhhhhhHHH
Confidence            56667777788888888888899999999999999999999766665 88999988888888777787888777666555


Q ss_pred             HHHHHH
Q 014628          378 AAGIWF  383 (421)
Q Consensus       378 ~~~~~~  383 (421)
                      ..++.+
T Consensus       196 ~~~~~~  201 (447)
T d1pw4a_         196 VALFAF  201 (447)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            544443

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.41  E-value=1e-13  Score=123.56  Aligned_cols=130  Identities=8%  Similarity=0.013  Sum_probs=119.0

Q ss_pred             cccchhhHHHHhhhhcCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhhhhhhhccchhhhhhccCCCCCchhHH
Q 014628            3 GLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWL   82 (421)
Q Consensus         3 g~~i~~~~~g~l~Dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~   82 (421)
                      +..++.++.+++.||+|+|+++..+.++.+++.++..+.++.+.+++..++.|++.+...+...+++.|.+|+++|+++.
T Consensus       271 ~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  350 (417)
T d1pv7a_         271 LNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIY  350 (417)
T ss_dssp             HHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHH
T ss_pred             ccccchhhhhhhhcccccccchhhhHHHHHHhhhccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHCCHhHHHHHH
Confidence            45667889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHH-HHHHHHHhhhHHHhHHhhhhcchhHHHHHHHHHHHHHHHHHHHhccc
Q 014628           83 SMF-YMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKP  132 (421)
Q Consensus        83 ~~~-~~~~~~G~~~g~~~~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p  132 (421)
                      +.. +....+|..++|.++|++.++.||+..|++.+++.++..++.++..+
T Consensus       351 ~~~~~~~~~~g~~i~~~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~l~  401 (417)
T d1pv7a_         351 LVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLS  401 (417)
T ss_dssp             HHHHTTTHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            985 56678999999999999999999999999999988888777777654